LOCUS       DASVXZ010000001         1814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_627552, whole genome shotgun sequence.
ACCESSION   DASVXZ010000001 DASVXZ010000000
VERSION     DASVXZ010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_627552"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VF788_00005"
     CDS             complement(<1..552)
                     /locus_tag="VF788_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932590.1"
                     /translation="MALEVHDIVLSSSLWLQLRDHLLPTDNGAGHWSNNEQLAFILAA
                     PNVSASRVRLVGHELLLAQRADLSHQSPSAIGPAGQFVADALTRCRQEGWSLIEVHSH
                     PFDSGPRTTFSGVDWSNDRMKMPRLASMLADPFYHATIVVGQNSLDAHYYQRVTGAIL
                     PVRQVTIVGGDCGDSQVLSHFPSS"
     gene            complement(555..1019)
                     /locus_tag="VF788_00010"
     CDS             complement(555..1019)
                     /locus_tag="VF788_00010"
                     /inference="COORDINATES: protein motif:HMM:NF025817.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E2/UBC family protein"
                     /protein_id="HEX8932591.1"
                     /translation="MSPIKDLETRRRLSRLKTEAILLSQQFGGVRFDTQHGTWFYVEQ
                     FPISPGWNKTHIELLIDIPHGTPGYPSVPPEWFWTDFDIRTKKGQPINHFFTRGPSSD
                     REHLDHGWGHFCVHLIGWRPAGGADLMRGHSLITYLNLVAAIFRDRRTLSGA"
     gene            complement(1019..1246)
                     /locus_tag="VF788_00015"
     CDS             complement(1019..1246)
                     /locus_tag="VF788_00015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932592.1"
                     /translation="MGNFIVNGEVVDVREERPTAADLKRHSKSVLSDWVMASMPDGQI
                     VKIEDNKPLPANAVDYSVVTPFTYGSSDRSG"
     gene            complement(1610..>1814)
                     /locus_tag="VF788_00020"
     CDS             complement(1610..>1814)
                     /locus_tag="VF788_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEX8932593.1"
                     /translation="GVQGSSNVTHGCVNLSTANAQVYYDSAIFGDPVEVTNSPTPLTG
                     ADGDIYDWTVPWDSWLALSALHS"
BASE COUNT          355 a          526 c          543 g          390 t
ORIGIN      
        1 tgatgaagga aagtggctca agacttgtga atcgccgcag tcgccaccaa cgatcgtcac
       61 ctgacgtacg ggcaggattg ctccggtaac acgttgatag tagtgggcgt caaggctgtt
      121 ctgccccacg actatcgtag cgtggtagaa ggggtcggcc agcattgacg cgagacgggg
      181 catcttcatc cggtcgttgg accagtcaac tccactaaaa gtcgtccgcg gacctgagtc
      241 aaagggatgt gagtggacct cgatgaggct ccatccctct tgccggcacc tcgtcaacgc
      301 atcggcgacg aactggccgg ctggcccgat ggctgacggc gactggtgag acaagtctgc
      361 ccgctgtgcg agaagtagct catggcctac caggcggacc cggctcgccg agacgttcgg
      421 tgcggcaagg ataaaagcca actgctcgtt gttgctccag tgccccgcgc cgttgtcagt
      481 gggcaacaga tggtcacgta attgcaacca caagcttgaa ctcagcacga tgtcgtgcac
      541 ctcaagtgcc atggtcatgc tccactcagg gtgcgccgat cgcgaaagat tgcggcgacc
      601 aggttcaaat aggttatcag actatggccg cgcatcaagt cggcgccgcc agccggtcgc
      661 cagccgatga ggtgcacgca gaaatgaccc caaccgtgat cgaggtgttc cctgtcgctg
      721 ctcgggccac gcgtgaagaa atggttgatc ggctgaccct tttttgtgcg tatgtcgaag
      781 tcggtccaga accactctgg tggcaccgag gggtaaccgg gggtaccgtg cggaatatcg
      841 atgagcagct cgatgtgggt tttattccac cccggcgaga tcggaaattg ctcgacatag
      901 aaccaagtgc cgtgctgcgt gtcgaaccgt acgccaccaa attgttgcga tagtagtatc
      961 gcctcggttt tgagtcggct tagccttcgg cgagtttcga ggtctttgat cggcgacatc
     1021 atcccgaccg atctgagctc ccataggtga acggtgtcac taccgagtag tcgaccgcat
     1081 tggcgggcag cggcttgttg tcctcgattt tgacaatctg accgtcgggc atgctcgcca
     1141 ttacccagtc tgacagcacg cttttgctgt gacgcttgag gtccgcagcg gttggccgct
     1201 cctcacgcac gtccacaacc tcaccgttga ctatgaagtt ccccatttca gcctcccggt
     1261 tcttcagtcg attgcacatt tcgtcaccgg aagcctcact tccgacgcac gtgaagcccg
     1321 ctcttgggcg gatgatggcg aagacgcgcc ggatgggttg cggccgctgt tcgacgggtc
     1381 cagtgtattt tcgccatggt tcccctttgc tgggccgccc gtatcgggtt catcgcatcc
     1441 cggcaatggt gtgttacggc ttccgcgatg agaacgcaaa gttatgacac gtacacgcag
     1501 cgaattctta agtagcgctc aatgtactat ttgtctgttt gcatttgaga atccagccag
     1561 ccgacagcgg cccggggtgc cagcgccgag tcgggctcga tccacgacgt taggagtgca
     1621 aggccgacaa cgccagccag ctgtcccacg gcactgtcca gtcgtagatg tcgccgtcag
     1681 cgccagtcag cggggttggg ctgttggtca cctcgaccgg atccccgaag atcgcggagt
     1741 cgtagtatac ctgcgcgttg gcagtggaca ggttcacgca cccgtgggtc acattcgagg
     1801 agccttgcac gccg
//
LOCUS       DASVXZ010000002         1967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_89944, whole genome shotgun sequence.
ACCESSION   DASVXZ010000002 DASVXZ010000000
VERSION     DASVXZ010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89944"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..906
                     /locus_tag="VF788_00025"
     CDS             22..906
                     /locus_tag="VF788_00025"
                     /inference="COORDINATES: protein motif:HMM:NF013890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932594.1"
                     /translation="MTTNLECRLLCAGVTTDAITKDGPITPQPAPYFGAAQFVDDPPV
                     GFVGGTRAINACLVGTTIDGVVLAFRGTVALDSPDHEQTIRDWINDLDTELVRGDGLP
                     GLVHAGFWGSLDSLWPALLVEVLQRLTKAGLNAQLYVTGFSKGGAVADLAAMRFFIER
                     GMRPMAYTYAAPHPGNEDFAAAYDQHLQAVRYEYANDIVPLLPPSLAFREMFASVPFM
                     QPYLHRFDLDYAPVGTLRYITKAGAIVPDSPILRFQRYLSVAELIVAEGFEEIVADHN
                     GDCGGGYMNAVCPQGVCP"
     gene            1387..>1967
                     /locus_tag="VF788_00030"
     CDS             1387..>1967
                     /locus_tag="VF788_00030"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX8932595.1"
                     /translation="MNAAASRGIQQVFVLVLENRSFDHMLGFSGITGIDAVNGESRSI
                     DGVVGTETNSYQGKAYSVTHPADYAMLADPGHEFSDVLVQLAGENASYPSGGPYPQLT
                     NSGFVASYVASNSRKQITVNPAEVMKCYQPSQLPVLTALAREFVVCDRWFSAMPGPTW
                     PNRFFLHGASSGDLDDSPTLGQIAEWEVFHGFAL"
BASE COUNT          354 a          617 c          623 g          373 t
ORIGIN      
        1 tcctgaggga ggatccacac catgacgacc aacctggagt gccgtctgct gtgcgcgggc
       61 gtgacaaccg acgcgatcac aaaggacggt ccgatcaccc cacagccggc gccgtatttt
      121 ggtgcggcgc aatttgtcga cgatcctccg gtgggtttcg tcgggggcac ccgagcgatc
      181 aatgcctgcc tcgtcggtac cacgatcgat ggcgtcgtgt tggcgtttcg ggggacggtg
      241 gcgttggaca gtcccgatca cgagcagacg attcgcgact ggatcaacga tctggacact
      301 gagctggtgc gtggtgatgg cttgccaggg ctagtccacg ccggtttctg gggatcgctg
      361 gacagcctct ggcccgcgct gctggtcgag gtgctgcaaa ggctcacgaa ggccggcctg
      421 aacgctcaac tgtatgtgac tggattcagc aagggtggcg cggtggccga cctggcggcg
      481 atgcgctttt ttatcgagcg cggcatgcgc ccgatggcct atacctatgc cgcgccgcat
      541 cccggtaacg aggatttcgc ggccgcgtac gatcagcacc tccaagccgt ccgctacgaa
      601 tacgccaacg atatcgtacc gctgttacca ccgagcctcg cgttccgtga aatgttcgcg
      661 tccgtgccgt tcatgcagcc atatctgcat cggttcgatc tcgattacgc cccggtcggt
      721 acgctgcgct atatcaccaa agcgggagcg atcgtccccg attcgccgat attgcgcttc
      781 cagcgctact tgagcgtggc cgagctgatc gtcgccgagg gcttcgagga gatcgtcgcg
      841 gatcacaacg gcgactgcgg cggcggttac atgaacgcgg tgtgcccaca gggcgtgtgc
      901 ccctaaccga tcagacggga acaaagacag cacgagagcc cccactgact gcattcaccc
      961 gcaaacgacc gctggcggcg ggagagcggc gaacttgccc aacccgccgc tctcccgccg
     1021 cgccagcggc gtgtggtcag tcgaccgagg cgctcagggc tcgcggaacc actcacgagg
     1081 ccgcctctgg gctcgattgt cgttctcgtc gtggcaggcg ccgacgggcg ggtgcgcagg
     1141 tcccagtccg atccttaccg gtctacacgt cgcgacggat ggcctgaatg tcggtgttct
     1201 ggtatgcgtc gtgcaagatg cgtccggcaa cgttttggtc gccgaattcg aacgtcaggg
     1261 catacccagg gcgagcgcga acatcagcgc cccataagtc atgatgacga tctcaggagc
     1321 gatccgcagc ggcaccccag caccgccgca ccacgttgat cgcgatcatc agacagaagg
     1381 tcatctgtga acgccgccgc gtcgagaggt atccagcagg tgttcgtgct ggtgttagag
     1441 aaccggtcgt tcgatcacat gctggggttc tcggggatca ccggtatcga tgccgtcaat
     1501 ggggagagcc gcagtatcga cggtgtggtg ggcaccgaaa cgaacagtta ccagggcaaa
     1561 gcgtattcgg ttacccatcc cgcggactac gccatgctcg ccgatcccgg ccatgagttc
     1621 tccgacgtgc tcgtgcagct ggctggtgag aacgcgtcgt acccgagcgg gggtccgtac
     1681 cctcagctca ccaacagtgg ctttgtggcc agctacgtgg ccagcaacag ccgcaagcag
     1741 atcaccgtaa atccggcaga ggtgatgaag tgctaccagc ctagccaatt gccggtcctt
     1801 accgctctcg cgcgggagtt cgtcgtctgc gaccgctggt tttccgcgat gcccggcccg
     1861 acctggccca accggttttt cctgcacggc gcgtcatccg gcgacctgga tgacagtccc
     1921 accctggggc aaatcgcgga gtgggaggtc tttcacggct tcgcgct
//
LOCUS       DASVXZ010000003         1972 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_896700, whole genome shotgun sequence.
ACCESSION   DASVXZ010000003 DASVXZ010000000
VERSION     DASVXZ010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896700"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VF788_00035"
     CDS             complement(<1..400)
                     /locus_tag="VF788_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEX8932596.1"
                     /translation="MGHRSAEQISRTELGPRPLPPLGPPRSPSAPSAVDTVLDNGLRV
                     IAVRRPAVPMVELRLRIPFGGTHRTHSARAELLAATLLQGTARRDRFAIDKVLAAIGG
                     DLSAGVDPEHLSVAGSALASGLDVVLDVLGD"
     gene            complement(400..1707)
                     /locus_tag="VF788_00040"
     CDS             complement(400..1707)
                     /locus_tag="VF788_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEX8932597.1"
                     /translation="MTRILSPTVELHRETLSNGLRVVLSPDRSAPVVAVGVHYDVGFR
                     SEPEGRTGFAHLFEHLMFQGSESLEKLAHFRHVQASGGTFNGSTHPDYTDYYEVVPSA
                     ALERALFIEADRMRAPRITAENLRNQVDVVKEEIRLNVLNRPYGGFPWITLPPVLYNT
                     FPNAHNGYGDFSELEAATVDDCAAFFDVYYAPGNAVLTVSGDFAVDAALELVHRHFDD
                     VPARPVPRRPSFAEPPPEGERRHSYPDQHAPLPALAIGYRMPDPAAGFDDYLAYEVLA
                     SVLADGDSSRLEQRLVHTDAVVTEIGAGCGLFGAPLDARDPDTFTISAVHPSSVDVET
                     VLTATDEEIARLAADGPDPDELARVTARWAATVFREHDRLVSRTMAIGAFELLHGRAE
                     LISELPAMVAAMEPGQVAKAAAALRPDSRAVLIVEPARAGQEA"
     gene            complement(1704..>1972)
                     /locus_tag="VF788_00045"
     CDS             complement(1704..>1972)
                     /locus_tag="VF788_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932598.1"
                     /translation="HVELNDGRIRPAMLDGCGHRLGEVLAVEVPDPLPAGALVVRLSG
                     TGVRTASADGQRLAAVGVTVAGVAGALLMWRLRGSRLVRRRLGA"
BASE COUNT          335 a          687 c          672 g          278 t
ORIGIN      
        1 catccccgag aacatcgagc accacatcca gaccgctggc caacgctgat cccgccaccg
       61 acaagtgctc gggatccacc ccggccgaaa gatcaccacc gatagcggcc agcaccttgt
      121 cgatggcgaa gcgatcacgc cgtgccgtgc cctgcagcaa ggtcgcggcg agcaactcgg
      181 cacgggcgga atgggtacgg tgcgtgccgc cgaacgggat cctcaagcgc agctccacca
      241 tcggcaccgc gggtcgccgc accgcgatca cccgcagccc gttgtccagc acggtgtcca
      301 ccgcggacgg cgcgctcggg ctgcgcggcg gccccagcgg tggcagcgga cgcggcccca
      361 gctctgtcct gctgatctgc tcggcgctgc ggtggcccat cacgcctcct gccctgcacg
      421 tgcgggttcg acgatcaaca ctgcccggga atccggtcgt agtgcggcgg ccgctttcgc
      481 aacctgacca ggctccattg cagccaccat ggccggcagc tcgctgatca gttcggcgcg
      541 cccgtgcagc agctcgaagg cgccgatggc catcgtccgg gataccagcc ggtcgtgctc
      601 acggaacact gttgcggccc atcgagcggt gactctggcc agctcgtcgg gatccgggcc
      661 gtccgcggca agccgggcga tctcctcgtc ggtcgcggtg agaaccgtct cgacgtccac
      721 gctggagggg tggaccgcgg agatggtgaa ggtgtcgggg tcgcgggcat ccagtggcgc
      781 accgaacaga ccgcagcccg caccgatctc ggtgaccacc gcatcggtgt gcaccaagcg
      841 ctgctcgagg cgagaggagt cgccgtcggc gagcaccgag gcgagcacct cgtaggcgag
      901 gtagtcatcg aagccggcgg ccggatcggg catccggtag ccgatggcca acgccggcag
      961 tggcgcatgc tggtcggggt agctgtgccg gcgttcgccc tccggtggtg gctcggcgaa
     1021 ggagggccgc cggggaacgg gacgggcggg cacgtcgtcg aagtgccggt gtaccagctc
     1081 gagggcggca tccacggcga aatccccgga caccgtgagc accgcattgc ccggggcgta
     1141 atagacgtcg aagaacgccg cgcaatcgtc cacggtggcc gcttcgagct cggagaaatc
     1201 gccgtagccg ttgtgcgcgt tcgggaaggt gttgtagagc accggcggca gcgtgatcca
     1261 cgggaatcca ccgtagggcc ggttcagcac gttgagccgg atttcctcct tgaccacgtc
     1321 gacctggtta cgcaggttct ccgcggtgat ccggggagcc cgcatccggt ccgcttcgat
     1381 gaacagcgcg cgctccagcg cagcggaggg cacgacctcg taatagtcgg tgtagtcggg
     1441 atgcgtcgag ccgttgaagg ttccccccga ggcctgcacg tggcggaagt gcgcaagctt
     1501 ctccaggctc tcgctgccct ggaacatcag gtgctcgaag agatgcgcaa atccggtacg
     1561 accctccggc tcggagcgga atccgacgtc gtagtgcacg ccgaccgcca ccaccggcgc
     1621 ggatcggtcc ggactcagca ccacccgcag cccgttggac aaggtctcgc ggtgcaactc
     1681 caccgtagga gagaggatgc gggtcatgca cccagcctac ggcggaccag ccggctgccg
     1741 cgtagccgcc acatcagcag cgcaccagcc actccggcga ccgtaacacc caccgcggca
     1801 aggcgctgcc catccgccga cgcggtgcgc acgccggttc ccgaaaggcg gacaacgagc
     1861 gcaccggcgg gcaaggggtc gggcacctcg acggccagca cctcacccag tcggtgaccg
     1921 cacccgtcca gcatggccgg tcggatccgg ccgtcgttca gctcgacgtg ca
//
LOCUS       DASVXZ010000004         2299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_269672, whole genome shotgun sequence.
ACCESSION   DASVXZ010000004 DASVXZ010000000
VERSION     DASVXZ010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269672"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VF788_00050"
     CDS             <1..465
                     /locus_tag="VF788_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE thiosulfate transporter family
                     protein"
                     /protein_id="HEX8932599.1"
                     /translation="AATAEQFGTHPGAPTPPDAARGEAQTQGLDVEPAGGNETAPVAS
                     LRPAPLVTQAALLLSIFLGGWVAAVTAGRFELRFDMGNGFRELVTDNPTTMISVLFVG
                     GVLVGFGTRLAGGCSSGHGLSGCGRLRPVSILATAVFFGAAVLVSFLLWKVI"
     gene            465..881
                     /locus_tag="VF788_00055"
     CDS             465..881
                     /locus_tag="VF788_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE thiosulfate transporter family
                     protein"
                     /protein_id="HEX8932600.1"
                     /translation="MRTRGGVLVANIIAGLVLGYTVANIGFGDYAELNRMFTFQDLRM
                     LLAFAGAVAIIVVVFALLRVRRTPGRIHAGVIPGAVLFGTGWAISGGCPAIPIIQVAS
                     GYLPALITIVGVIVGIRLCHWANARYFHLDRGSCGL"
     gene            complement(935..2080)
                     /locus_tag="VF788_00060"
     CDS             complement(935..2080)
                     /locus_tag="VF788_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEX8932601.1"
                     /translation="MANDDERIAVFLDYENLAIGARDGLGVSPFDFGPVSDALAERGR
                     VVVRRAYADWSYFDADRRLLARAQVELIEIPQLIGWSRKNAADIKMAVDAIELAYERS
                     FITTFAIATGDSDFTPLVHKLRELDKRVIGIGVQSSTSALLPPACDEFLFYDRLPGVE
                     PSQESRRRRGRGRQSSVVPPSVPMPSGSVTIPTPSGATANADGTDPVVDVPVEEAVEA
                     GEERDMSLLVARTLAGLQRHSDGPVLASMLKRAILRKDPTFDEADQGFRGFGELLRHL
                     ESQRVVELRQGSAQGDPEVAFPDDDSANHDAFRLLVDVVRELQTSGAAPQLSGLKNQL
                     RKRRSDFSEKRYGFNSFLSFAKAARARDLIAMDWDDDSGDYLLRVPG"
BASE COUNT          387 a          775 c          719 g          418 t
ORIGIN      
        1 gcggccaccg ctgagcagtt cggaacccac cccggagcgc ccaccccgcc ggacgctgcg
       61 cgcggcgagg cgcagacaca gggcctagac gtcgagccgg caggggggaa tgagacggcc
      121 ccggtcgcga gcctgcgccc ggcacctcta gtgacccagg ccgccctgct cctgtcgatt
      181 ttcctcggcg ggtgggtagc ggcagtcacc gccggccgat tcgagctccg cttcgatatg
      241 ggcaacggtt tccgcgaact cgtcaccgac aatccgacca ccatgatcag tgtgttgttc
      301 gttggaggtg tactcgtcgg ctttggcact cgcctcgccg gagggtgcag ttctggccac
      361 ggactcagcg gctgcggccg gctacgcccg gtcagcatcc tcgcgacggc cgtcttcttc
      421 ggcgccgctg tgctcgtgtc gttcctgctg tggaaggtga tctgatgcgt accagaggcg
      481 gggttctcgt cgccaatatc atcgccgggc tggtcctcgg ctacaccgtc gccaacatcg
      541 gattcggcga ctacgcggaa ctcaaccgca tgttcacctt ccaggatctg cgtatgctcc
      601 ttgccttcgc cggcgctgta gcgatcatcg tggtggtctt cgccttgcta cgggtccgcc
      661 gtacacccgg gcgcatccac gctggcgtca taccgggcgc agtgctgttc gggaccggct
      721 gggccatttc aggtggatgc ccggcgatac cgatcatcca agtcgccagc ggatacctcc
      781 ccgctctcat cacgatcgtc ggcgtcatcg tcggcatccg gctctgccac tgggccaacg
      841 ccaggtactt ccacctcgac cgcggttcct gcgggctgta gtgatcccta gcgagcacta
      901 agctcggcca cggagcagtg cgggcatcag tgcttcagcc gggcactcgc aacaggtagt
      961 cgccgctgtc gtcatcccag tccatggcga tcaggtcgcg cgcgcgggcc gccttggcga
     1021 acgataggaa gctgttaaag ccgtaacgct tctcgctgaa atcggatcga cgcttgcgca
     1081 attggttttt gagcccgctc agctgaggcg ccgcgcccga tgtctgcaac tcacggacga
     1141 cgtcgacgag cagccggaag gcgtcgtggt tggccgagtc atcgtcggga aaagccacct
     1201 caggatcgcc ctgcgccgat ccctgccgca actccacaac acgttggctc tcgaggtggc
     1261 gaagtagctc gccgaatccc cgaaatccct ggtcggcctc gtcgaaggtg gggtccttgc
     1321 gcaggatcgc ccgcttgagc atcgacgcga gcaccggtcc atcgctgtgg cgctgcagac
     1381 cagccagggt gcgcgcgacg agcaggctca tgtcgcgttc ctcgcccgcc tctaccgctt
     1441 cctcgaccgg gacatcgacg accgggtcgg tcccatccgc attcgcggtg gcacccgagg
     1501 gcgtcggtat cgtgaccgag cctgagggca tcggtaccga cggtggcaca acgctggact
     1561 ggcgcccgcg ccctctcctt cgcctcgact cttgcgatgg ctcgacgccg ggcagacggt
     1621 catagaacag gaactcgtcg caggcgggcg gcagcagggc cgacgtcgag gactgcacgc
     1681 cgatgccgat aactcgcttg tcgagctcac gcagtttgtg gaccagcggg gtgaagtcgg
     1741 agtcacccgt agcgatggcg aacgttgtga taaagctgcg ctcgtaggca agctctatcg
     1801 catcgacggc catcttgatg tcggctgcgt tcttccgcga ccatccaatg agctgaggga
     1861 tctcgatgag ctcgacctgc gcccgggcga gcagccggcg gtctgcgtcg aaatacgacc
     1921 agtcggcgta ggcccggcgc accaccacgc gccctcgctc ggcgagggcg tcggacaccg
     1981 ggccgaaatc aaagggcgag actcccaagc catcacgagc cccaatcgca aggttctcgt
     2041 agtcgaggaa cacggcgatg cgttcgtcgt cgttagccac tcacgcgctc ccaaggctgg
     2101 tccagcccgc agcgtacggc ctcaaactca taacaacgcc cgggcggggt accggtatcg
     2161 aggcagcacg gcggacgatc tcgtctgcat ccaccttgca gcagatccct tgtagctcgc
     2221 tacaactggg cgtcgccgtc caatctgatc atttttcgag acggccaacc cggctgaaac
     2281 gatttaccgt gtccgaaat
//
LOCUS       DASVXZ010000005         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_180166, whole genome shotgun sequence.
ACCESSION   DASVXZ010000005 DASVXZ010000000
VERSION     DASVXZ010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180166"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..524
                     /locus_tag="VF788_00065"
     CDS             138..524
                     /locus_tag="VF788_00065"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEX8932602.1"
                     /translation="MDSDGTAVVDAVRTAVQAATGREVGITGAGAAVQDYSSAVYDNF
                     PYVLLIIAAITFVLLARTFRSVLLPLKAVLLNLVSLAAVVFFWQQDHGSQAVFGVAPT
                     GAITFWLPMIIFVFLLGCPWTTRCSS"
     gene            530..1290
                     /locus_tag="VF788_00070"
                     /pseudo
     CDS             530..1290
                     /locus_tag="VF788_00070"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
     gene            1381..1515
                     /locus_tag="VF788_00075"
     CDS             1381..1515
                     /locus_tag="VF788_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932603.1"
                     /translation="MPRTAILYARSNRRENLDRQVRELEERRDRAGVVPISTVHAGLD
                     "
BASE COUNT          310 a          662 c          685 g          345 t
ORIGIN      
        1 cgacgtgcgc atcggccagt ccagggtgga ttcgctgtcc agcagcggga ccgccttcga
       61 caccgtcacc cagctgcgcc agggcggggt ggattccggc gtactcgcac ccatcgaagt
      121 gctggtaccc gctgaccgtg gacagcgacg gcaccgcagt ggtcgatgcc gtgcgcaccg
      181 cggtgcaggc ggccaccggt agggaggtcg gcatcaccgg ggcgggcgcc gcagtgcagg
      241 actactccag cgcggtctac gacaacttcc cctacgtgct gctcatcatc gcggcgatca
      301 cgttcgtgct gctggcgcgc accttccgct cagtgctgct gccgttgaag gccgtgctgc
      361 tgaatctcgt gtcgctcgcc gcggtggtgt tcttctggca gcaggatcac ggctcgcaag
      421 cggtattcgg cgttgcaccc accggcgcca tcacgttctg gctacctatg atcatcttcg
      481 ttttcctgtt gggctgtcca tggactacga ggtgttcatc ctgaccagga tgcgcgagga
      541 gtacgacgtc accggctcga ctcccgcagc ggtcgtgggc ggcctgggcc ggaccggtcg
      601 cctggtgacc tcggccgcgc tgatcctgcc cttcgtcttc gctgcgctgg cctcggcccc
      661 ggtaccgaca tcaaagtgtt cgggaccgcg ctgggggccg gcatcgtgat cgacgcgacc
      721 gtggtgcggg cgctgctggt gcccgcattg gtgagcctgt tcggcaggtg gaactggtgg
      781 ctgcccgacc ggctcgcgac gctgttgcgg gtcgggccct caccggtgga ctcacctcag
      841 ttcaccggcg actggatggt cactgcaccg gaccccgagc cagtgaccag cggctcggtc
      901 gatggccccg aacccaaccc gatggtgaag atgccggtga tagcggctga ctcagcacca
      961 gaccccgagc cgatgatcag cgactccgtc cgtgggcagg accgaggcgc gttggtgggc
     1021 gtcccggtga cgttgatcga cactgggggc cggcagatcg ccctgttccg caccggtccg
     1081 gagggttctt actgtctgcg ggcacccagc gctggcagtt acctgttggc cgcctccgcc
     1141 agtggacacc acccagccgc gtttctcatt accgtcctgg accacccggt gcagcaggag
     1201 atcatgctct ccaaccacca ctccgccgac cccgcacttc cccgagaagc cgtgtacgaa
     1261 ctgggcgcca acagcggcga ctactggtag ccggcaagtc accatagtta gtgcccatac
     1321 ctcgcgatgg gtgaatacat agggcggtcg ctcagcggaa gtgtcgggtt cactgaccgc
     1381 atgccgcgta ctgcgatcct ctatgcccgg tcgaatcgtc gcgagaacct cgaccggcag
     1441 gtgcgggagc tggaggagcg gcgtgaccgc gctggcgttg tgccgatcag cacggtgcac
     1501 gcaggtcttg actgacgtcg cagtcggccc gcggatctcg tatcagcaga tcatcagcga
     1561 gcaccggtcc cggctcgcta tcagccgaga cgaccggcac cactaaggct tgctggggat
     1621 ggggtgtgtg ggcgcggttg ggtgggcgcg caccgcttca ctcaagagta aggccaggcg
     1681 ggccagctca gccaccgcgg ccctggctga cgcggtgtga atcagtgacg gcgcgggtcc
     1741 gcggaattgc cggggtcaca ctccatactg ctgcccgacc gattggtcct ggagacggga
     1801 ggagtgcggt ggcacaacgg aatcgggagc gactggctgc ggctgcagcg cgccgaagat
     1861 cacgacgccg cgcctacctg ggatccgtgc gctccggacc ggggaccgcg gagaccggaa
     1921 ctcccggtgc ggggacggca cgggccaagc cgtcggcgga gaccatctcg acggtgctgc
     1981 tcagcgccgc gcacgaacgg tg
//
LOCUS       DASVXZ010000006         3675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1704282, whole genome shotgun sequence.
ACCESSION   DASVXZ010000006 DASVXZ010000000
VERSION     DASVXZ010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1704282"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            253..1464
                     /locus_tag="VF788_00080"
     CDS             253..1464
                     /locus_tag="VF788_00080"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8932604.1"
                     /translation="MRDPVSVQVAGPLASFVAGFRVRLELLGYASQSRVGHLRLMADL
                     SGWLGERGLDGSALSLQVVDGFVLDRRAVGHQDARSARSLRPLLEYLREVGAAPLPGQ
                     QRVVGPVEAMLADYASYLGHERGLAVLTIQRSTDLVRPFLAARVVNGLLGLESLTAAD
                     VTAFILARTQSASPATVQRTGTALRSLLRFLHLRGVIGSSLVGAVPTAANWKLVGLPK
                     YLTAEQIGVLLASCDLATAVGRRDLAILTLLARLGLRAGEVAALRLGDIDWRCGEITV
                     RGKGNRHERLPLPTDVGEALVAYLSGARPVTAVGREVFLGMRAPHHALTRGAVTQLVA
                     RASRRCGLGTIYAHRLRHTAATTMLHAGASLEEIGQVLRHRHAVTTAGYAKVDHERLR
                     ALARPWPGETA"
     gene            1461..1856
                     /locus_tag="VF788_00085"
     CDS             1461..1856
                     /locus_tag="VF788_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932605.1"
                     /translation="MSELHRQVQEYLTIRRAMGFKMERHEKLLRQFADYLATHDAATL
                     TIEHALAWASSPNSADPRWWAARLSVVRGFAVHLHALDPAHQVPPHGLMPHGSRRTVP
                     YPYTDREIAALVRAAGELSFPLRAATYQT"
     gene            1880..2386
                     /locus_tag="VF788_00090"
     CDS             1880..2386
                     /locus_tag="VF788_00090"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8932606.1"
                     /translation="MRVGEAIRLDREDLDDESGLLTVRGTKFGKSRQLPLHPTTTTAL
                     RTYLDLRDRLLPDPHTPALLVSTRGFRLRYERLWETFHRLVGQAELASRSPECTPRIH
                     DLRHTFAVTNLLGWYRDGADVPAMLPRLSTYLGHADPKHTYWYLSAAPELLALAADRL
                     DASQKELR"
     gene            2383..3372
                     /locus_tag="VF788_00095"
     CDS             2383..3372
                     /locus_tag="VF788_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8932607.1"
                     /translation="MTTLAPTLQAFFTDRLARHRQASPHTIAAYRDALKLLLVFAARH
                     TGKQPSQLQITDLDAPVIGAFLDHLESGRGNGVRTRNARLAAVHALFRFAALRHPEHA
                     AVIQRILAIPPKRFDRRLVTYLTEPEATALLAAPDTATWTGRRDHALLVLAVQTGLRV
                     SELTALTYADVRLGTGAHVNCLGKGRKQRITPLTSTTTAVISAWLTERRAAPTDPLFP
                     SRHGTAMSRDAMERRLAKHTATAARVEPTLTKKKVSPHVLRHTTAMRLLAAGVDSTVI
                     TLWLGHESVTTTQIYTHADLALKEQALARTAPLEATPSRYQPSDTVITFLDSL"
     gene            complement(3347..>3675)
                     /locus_tag="VF788_00100"
     CDS             complement(3347..>3675)
                     /locus_tag="VF788_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932608.1"
                     /translation="KTVRNTGAPAAGEGKEVKLFSAMLHAEAIVIAQLRVPDDTTEIT
                     QVAALLAGIDLTGVVVTADALCRARHKASYEDLRVMPTPLLGGAGGGGVSGGGVGIIT
                     GCRGRL"
BASE COUNT          567 a         1341 c         1179 g          588 t
ORIGIN      
        1 ccgaaatctt tttcgttctc atccgggaaa tagcccggtg tacccgaata gttgccccag
       61 cacgtgtgca cccagaactg acagttgacg ccttatgccg agctcggcat aagacctctt
      121 atgaggacct gcgggttatg ccgaccccgc tgctcggagg cgctggtggt ggcggcgtcc
      181 cgggcggcgg ggtcggcata atccgccccc ggatcgagga tgcccctctt ctatttacgg
      241 agagggaaga gcatgagaga tcctgtgtca gtccaggtcg cgggcccgct cgcgtcgttc
      301 gtggcgggtt ttcgtgtccg gctggagctg ttgggctatg cctcccagtc gcgggtcggt
      361 cacctgcggc tgatggccga cctgagcggc tggttgggcg aacgcgggtt ggatggctcg
      421 gcgttgagcc tgcaggtcgt ggacgggttc gttctggatc gtcgggctgt cgggcaccaa
      481 gacgcgcggt cggctcggtc gttgaggccg ctgctggagt acctgcgaga ggtcggggcg
      541 gctccgctgc ccgggcagca gcgggtggtg ggcccggtgg aggcgatgct ggccgactat
      601 gcctcctacc taggccacga gcggggtctg gccgtgctga ccatccagcg cagtacggat
      661 ctggtccgcc cgttcttagc tgcccgggtc gttaacggcc tgctcggtct ggaatcgctg
      721 accgccgctg acgtcaccgc gttcatactt gcccgcaccc agagcgcctc gcccgcgacg
      781 gtgcagcgca caggcacggc gctgcgctcc ttgctgcggt tcctgcacct gcgaggggtg
      841 atcggctctt cgctggtggg cgcggtgccg accgccgcca actggaaact ggtcgggctg
      901 ccgaagtatt tgacggccga acagatcggc gtgttgctgg cctcctgcga cctggcaacc
      961 gccgtcgggc ggcgtgatct ggcgatcctg acgttgctgg ccaggttggg gctgcgggcc
     1021 ggtgaggtgg ccgcgctgcg gctgggtgac atcgactggc ggtgcggcga gatcaccgtg
     1081 cggggcaagg gcaaccggca cgagcgtctc ccgctgccga ccgatgtcgg agaggccctc
     1141 gtggcctacc tcagcggggc ccgtcccgtc acggccgtgg gccgggaggt gttccttggg
     1201 atgcgggccc cgcatcacgc cctgacgcgg ggcgcggtca ctcagctggt ggcgcgcgcg
     1261 tcgcgccggt gtggtctggg gacgatctac gcacatcggc tgcggcacac ggcggcgacc
     1321 accatgctcc atgcgggcgc gtcgctggaa gagatcgggc aggtgctgcg gcatcggcac
     1381 gcggtgacca ccgccggcta cgcgaaggtg gaccacgaac ggttgcgcgc gctggctcgg
     1441 ccctggccgg gtgagaccgc gtgagcgagc tgcaccggca agtgcaggag tacctgacca
     1501 tccgccgggc catggggttc aaaatggagc gccacgaaaa gctcctcagg cagttcgcgg
     1561 attatctcgc cacgcacgac gcggcgacgc tcacgatcga acacgcctta gcctgggcga
     1621 gttccccgaa ctcggcggac ccgcgctggt gggcggcgcg gctgtcggtg gtccgtggct
     1681 tcgccgttca tctgcacgcg ctcgatccgg cccaccaggt accgccccac gggctgatgc
     1741 cgcacggctc tcgacgcacc gtgccctacc cctacaccga ccgcgagatc gccgccctgg
     1801 tccgggcggc cggcgagctg tccttcccgt tgcgggccgc gacctaccag acctgatccg
     1861 tctgctcgcc gtcacaggga tgcgggtcgg tgaggcgatc cggctcgacc gcgaggacct
     1921 agacgacgaa tccggcctgc tgacggtacg tggcaccaag ttcggcaagt cccgccagct
     1981 gccactgcac ccgacgacca ccaccgccct gcgcacctac ctggatctac gcgaccggct
     2041 actgcccgat ccgcacacac ctgcgctgct ggtgtccacc cgaggcttcc ggctgcgcta
     2101 cgaacggctc tgggagacct tccaccggct ggtcggccag gccgaactgg cgtcgcggtc
     2161 accggagtgc acgccaagga tccacgacct gcggcacacc ttcgcggtca ccaacctcct
     2221 cgggtggtat cgcgacggcg ccgatgtgcc ggccatgctg ccgcgcctgt cgacctacct
     2281 cggtcacgcc gaccccaagc acacctactg gtacctgtcc gccgctccgg aactgctcgc
     2341 gctggcggcc gaccgacttg acgcttccca gaaagagctc cgttgaccac tctcgccccc
     2401 accctgcagg cgttcttcac cgaccgtctg gcccggcacc gccaggccag cccgcacacg
     2461 atcgccgcct accgtgacgc gttgaagctg ctgctggtct tcgctgcccg gcacaccggc
     2521 aaacaaccgt cgcagctgca gatcaccgat ctggacgcac ccgtgatcgg cgcgttcctc
     2581 gaccacctgg aaagcggacg cggcaacggt gtccgcactc gaaacgcccg gctggccgcg
     2641 gtgcacgcgt tgttccggtt cgccgccttg cgccatccag agcacgcggc cgtgatccag
     2701 cgcatcctgg cgatcccgcc caaacgcttc gatcgccggc tcgtcaccta cctcaccgag
     2761 cccgaggcca ccgcacttct cgcagccccg gacaccgcca cctggaccgg gcgccgcgat
     2821 catgccctgc tggtcctggc tgtccagacc ggccttcggg tttccgaact caccgccctc
     2881 acctacgccg acgtccgcct gggcaccggt gcgcacgtca actgcctggg caagggccgc
     2941 aagcaaagga tcaccccact gacctccacc accacagcag tgatcagcgc ctggctgacc
     3001 gaacgccgcg cagcgcccac cgatccgctc ttccccagcc gccacggcac cgcaatgagc
     3061 cgcgacgcca tggaacggcg gctggccaaa cacaccgcga ccgccgctcg cgtcgaacca
     3121 accctgacca agaagaaggt ttcgccacac gtgctgcgac ataccaccgc gatgcgcctg
     3181 ctcgcagccg gcgtcgacag caccgtcatc accctatggc tcggccacga gagcgtcacc
     3241 accacccaga tctacaccca cgccgacctc gccctcaaag aacaggcact cgcgcgaacc
     3301 gcgccgctgg aggccacccc cagccgctac cagccctccg acaccgtcat aaccttcctc
     3361 gacagcctgt gattatgccg accccgccgc ccgagacgcc gccaccacca gcgcctccga
     3421 gcaacggggt cggcataacc cgcaggtcct cataagacgc cttatgccga gctcggcata
     3481 aggcgtcggc ggtgaccacc acgccggtca ggtcgatacc ggccagcagc gcggcaactt
     3541 gggtgatctc ggtggtgtcg tcgggaaccc ggagttgggc gatcacgatc gcctcggcgt
     3601 gcagcatcgc cgagaacagc ttcacctcct tgccctcacc ggcagccggc gccccggtgt
     3661 tgcggactgt cttgc
//
LOCUS       DASVXZ010000007         2321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_359703, whole genome shotgun sequence.
ACCESSION   DASVXZ010000007 DASVXZ010000000
VERSION     DASVXZ010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359703"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            390..629
                     /locus_tag="VF788_00105"
     CDS             390..629
                     /locus_tag="VF788_00105"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8932609.1"
                     /translation="MATIDDCYDNFMMESFWRTLQLEVLDTRNWETRDELANAIFEWI
                     ECWYNTERRHSSIGMLRPVEFEVLYTDQTSTQDDH"
     gene            1936..2295
                     /locus_tag="VF788_00110"
     CDS             1936..2295
                     /locus_tag="VF788_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932610.1"
                     /translation="MDDRRMLLLSILYRFVRCLLGLTTVLMRRDLSKDVELLVVRHEN
                     TVLRRQVARVRYTPAERVWLAALSRLLPRRCWAAIFRLLPPRSWPDTAGWSRGKWTTP
                     PAASLDAPRPLRRSRNW"
BASE COUNT          522 a          719 c          637 g          443 t
ORIGIN      
        1 tgatgagacc atcaacgcag cctaatgatc accgggccgc caccgaaatt ccacggaatt
       61 cgggacatcc tcgaccgagg acgacctggt ccaccgccgc ttcaccgtcg aggcaccaaa
      121 ccggctgtgg ttgacagata tcacagaaca tccaacaaga gaagggaagc tgtactgcgc
      181 agccgtgatg gacgcctatt cgcgactcat cgtcggatgg tcaatcgccg accacatgcg
      241 caccgagctc gtcgtcgatg cgctcgcccg tggccacact tcaccggcgc cccgaaatcg
      301 attagacgat cctgcactcc gaccacggaa ctcaatacac ctcttgggcg ttcggacaac
      361 ggctacgcgc cgccggattg ctcccctcaa tggccactat cgacgactgc tacgacaact
      421 ttatgatgga atccttctgg agaactttgc aactcgaagt cctcgacacc agaaactggg
      481 aaacccgcga cgaacttgcc aacgccatct tcgagtggat agaatgctgg tataacaccg
      541 aacggcgaca ttccagcatc ggaatgctcc ggccggtcga gttcgaagtc ctctacaccg
      601 accagacgtc cacacaggac gatcactgac cccacaccct gggtgtccgt actgaggggt
      661 caagctcaga gcagcttgat caacttacgc tacttggcat tggacccagg ccgagaccca
      721 acccccacac gtgatcaacc tggccgatca ccaggttcgc cgcagaccaa tcctcgacgg
      781 acttaccagc gagtaccaaa tcgcaacatg atcatacacg agcacccata aacctacagg
      841 tcaaaccacc gccctatatt gccctaaatt cgtgccctac acggttgacg gtcgagttct
      901 gcataagcgt ttctcctgcc gtgggcgccc ggttcgcccg gtgtggtgaa agggccgggc
      961 gaaccgagca gtcaggtgtg gttagggtcg gccagcgatg gtctggctgg ttgacctcgg
     1021 cgcgcagctc acccagatca tggtgcagcc tgaatcgcga cgaataacac accgtgggca
     1081 tccaccatcg gggtatccgg ccaactggca cccgtgaaag catccaccgg tgacgcgaag
     1141 cgatcactgg caatgcgcca gccttggcca gatgccaaaa ctattgattg gttcggtctt
     1201 aattagctta gggcctatcg ggtctgtcga agtcggcagc ctggagcgcc gccaacgctc
     1261 gagtgacgag ccgccgaccc cgatccaggt caccccgccg cacccgagcc taaaagactt
     1321 ccaacgaagc cgccgatgct ggcgaaaatg ctgttgacat caccgaagat cccgctcaag
     1381 aaagtggaga gcatgtcgag tcagtccttt catcacacca acagtagttg gtccgcaggg
     1441 gtacgaccaa ccatgagcga tagtagccaa ttaaagctcc ccgttgtcaa ggccttatgc
     1501 ctagttgacc tgtcaagcaa atgaaaatgt agcggtatgc gaccagctgt cttcggagcg
     1561 tgtaaactca gtgtgcgcca tagtctccag cgaactcatt cgacgaactg gcatataaca
     1621 cagggcgacc acctgttctc ggcgagcgag ccggttatgc cgaacaggtg ttcgccgtga
     1681 gactacggtt agctatcgct cttacctgct atctctcagc cggcgcagac gaaaacaact
     1741 gttcacagcc acacagtgat caatgcacac cgtcgattag catggtgata agaggcgaac
     1801 ggttaagtgc aaggaggtta cgaggacttg attgcttatt gcgtgcccag gagtaccaag
     1861 ctgagggcta cacgctgtgg gctcggaaaa cgcgatgcag tgccctggcc tgcgctcttc
     1921 gtgtggtggt tgggcatgga tgatcgtcgg atgctgttgt tgtcgatctt gtaccggttc
     1981 gtgcgatgtc tactcggctt aaccaccgtg ctgatgcggc gagacctgag caaggatgtc
     2041 gaactgctgg tcgtgcggca cgagaacact gtgttgcgcc gccaggttgc ccgggtccgc
     2101 tacacgcccg ccgagcgcgt gtggctggcg gccctatccc ggctcttgcc gcgccgctgc
     2161 tgggccgcga tcttccggtt actcccgcca cgatcctggc ctgacaccgc cggttggtct
     2221 cgcgggaaat ggactacacc gcccgccgcc agcctggacg cccctcgacc gctgcggcga
     2281 tcaagaaact ggtgatgcga tggcaaagga gaaccccacg t
//
LOCUS       DASVXZ010000008         2825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1166529, whole genome shotgun sequence.
ACCESSION   DASVXZ010000008 DASVXZ010000000
VERSION     DASVXZ010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1166529"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1030
                     /locus_tag="VF788_00115"
     CDS             <1..1030
                     /locus_tag="VF788_00115"
                     /inference="COORDINATES: protein motif:HMM:NF033550.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEX8932611.1"
                     /translation="VYLQATTQRVRCPEHGVVAAAVPWARAGSRFTTAFEDTAAWLVC
                     HATLSVVAVLLRIAWRSVAAMVTRVVAERAGQTDRLAGLRRIGIDEISYRKGQRYLLV
                     VVDHDTGRLVWAGKDRTAVTLRRFFDDLGVERAGQLTHISADGAEWIHAVVSERAPRA
                     VLCLDAFHVVAWATKALDAVRRRLAAQLRAESQHEAAAELTNTRWALLKNPPNQSGAQ
                     RSTVAGIARTNKPLYTAYLLKEQLRAIFETKGRTGRALLAGWISWARRCRIPEFVTLA
                     QTLTRYRTLILNTLDHALSNARVEATNTPLRLLTRRSYGFHSPESLIAMANLTRGGLC
                     PPLPGRTA"
     gene            1205..2242
                     /locus_tag="VF788_00120"
     CDS             1205..2242
                     /locus_tag="VF788_00120"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEX8932612.1"
                     /translation="MAKKGRRATNEERFAAVQMYDNGLDTDRIAEMMNVSRSSVFEWV
                     WKYHQGGLAAISTKFASGRPTVLEDSEMIRLYVMINGKDPRVYSFGLALWTRALIRDL
                     ITKTFGKEVSLVTVGRILKKLGMSAQRPWYRSWTQDPERVARWKREEYPALKARAAQV
                     GATILFADGATILFADEASVRTDYHAGTTWAPIGQTPVVTGSAVRHGVKMVSAIGQRG
                     ELSFQVHEGSMNAERFIEFLADLVHDVDTPVFLVVDGSSVHRAAIVKDYVASTQGRLE
                     LFFLPPYSPELNPDEWVNKNVKHDRIARAVPLTRDELKAVAVEALERLKECPGIVRGF
                     FGDPKLAYIHA"
     gene            2349..>2825
                     /locus_tag="VF788_00125"
     CDS             2349..>2825
                     /locus_tag="VF788_00125"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEX8932613.1"
                     /translation="MQKDQAPQLLFIERCLQLLKPGGRLGIILPESLFGSPSYAHIIK
                     WLEKQAAILAVVAMPEPLFKTGGKTGTHTKVCMVVMRKRSFPGDERLIFMADAKWCGH
                     DSRGNPTMRKEDGEEVLLDDVPIVAQNYVSFKDSGLVPSDHLGFMQPRDQIVNTILV"
BASE COUNT          524 a          861 c          928 g          512 t
ORIGIN      
        1 ggtgtatctg caggccacga cccagcgggt gcggtgtccc gagcatgggg tggtggccgc
       61 cgcggtcccg tgggctaggg cgggatcgcg gttcaccacc gcgttcgagg acaccgcggc
      121 gtggctggtc tgtcatgcca ccctgagtgt ggtggcggtg ctgctgcgga tcgcctggcg
      181 gtcggtggcg gcgatggtga cccgggtggt ggccgagcgg gccgggcaga cagatcggct
      241 cgccgggctg cgccggatcg ggattgacga gatctcctac cgcaaggggc agcgctacct
      301 gctcgttgtg gtcgatcatg acaccgggcg gctggtctgg gctggtaagg accgcaccgc
      361 cgtgacgctg cggcgattct tcgatgatct gggtgtcgag cgcgccggtc agctcaccca
      421 catctccgcc gacggggcgg agtggatcca tgctgtggtc agcgagcggg cgccgcgggc
      481 ggtgttgtgc ctagacgcct tccatgtcgt ggcctgggct acgaaggccc tggatgcggt
      541 gcgccggcgt ctggccgctc agctgcgcgc cgagagccag cacgaggccg ccgcggagct
      601 gaccaacacc cggtgggcgc tgttgaagaa ccccccgaac cagtccggcg cccaacgcag
      661 cacggtcgcg ggcatcgccc ggacgaacaa gccgctctac accgcctacc tgctcaaaga
      721 acagctccgg gcgattttcg agaccaaggg caggacaggc cgggcgctgc tggccggctg
      781 gatctcctgg gcccggcgct gccgtatccc ggagttcgtc acgcttgccc agactctcac
      841 ccgctaccgc acgctgatcc tcaacaccct tgatcacgcc ctgtccaatg cccgggttga
      901 ggccaccaac acccccctgc gattgctgac ccgccggtcc tacggcttcc atagccccga
      961 gtcattgatc gccatggcca acctcacccg cggggggctc tgcccacccc tccccggccg
     1021 gacagcatga tcacccaccc acacaaacag cagaagagcc cccctacccc tgcactatat
     1081 gtacttccgg cgatcccggt ggcccctgca gggtggcaac ggtataaatt cgagtacaca
     1141 cagctccttc taattagttc actagttcct ggacttcggg ggcgtattgt ggaatactta
     1201 gggcatggcc aagaagggtc gcagagcgac caatgaggag cggttcgccg ctgtccagat
     1261 gtatgataac ggactcgaca ctgaccggat cgcggagatg atgaatgtga gccggtcgtc
     1321 ggtcttcgag tgggtctgga aatatcatca aggcgggctc gccgcgatct ccacgaaatt
     1381 cgcctccggc cgcccgaccg tgctggagga cagtgagatg atccgcctct acgtgatgat
     1441 caacgggaag gatccgcggg tttacagttt cggtctggcg ttgtggaccc gagccctgat
     1501 cagggacctg atcacaaaga cgttcggcaa ggaagtgtct ctggtcacgg tgggacggat
     1561 tctgaagaag ctggggatgt cggcgcagcg gccgtggtac cggtcctgga cgcaggaccc
     1621 ggagcgggtg gcgcgctgga agcgcgagga gtacccggcg ctcaaggccc gcgcggcgca
     1681 ggtgggcgcg acgatcctgt tcgctgatgg cgcgacgatc ctgttcgctg atgaggcgtc
     1741 ggtccggacc gactatcacg ccgggaccac ctgggcgccg atcgggcaga ctcccgtggt
     1801 gaccgggtcg gcggtccgtc acggagtcaa gatggtgtcg gcgatcgggc agcgcggcga
     1861 gctgagtttc caggtccatg aggggtcgat gaacgccgag cggttcattg aattcctggc
     1921 cgacctggtt catgatgttg acactcctgt ctttctggtg gtcgatggct cctcggtgca
     1981 cagggcggcc atcgtgaagg actacgtggc cagcacgcag gggagactgg agttgttctt
     2041 tctgccgccc tattctcccg agctgaaccc ggatgaatgg gtcaacaaga acgtcaagca
     2101 cgaccggatc gcccgggcgg tgccgctgac cagggatgag ttgaaggcgg tcgcggtcga
     2161 ggctctggag cggctcaagg aatgtcctgg aatcgttcgc ggattcttcg gggatccgaa
     2221 actggcctac atccacgcat gatccacgac accaaaccca gtccagaaac cctcgttgtc
     2281 cttagtacga ccttggccat gtgtgggcgg ctagcaggga gaccggggag aagcagccca
     2341 cagacaaggt gcagaaggac caggcgccgc aactgctgtt catcgaacgc tgcctgcagc
     2401 tactcaagcc cggtggccgc ctcggcatca tcttacccga aagccttttc ggtagcccat
     2461 catatgcgca catcatcaag tggctggaaa agcaggctgc tattctggcc gtcgtagcca
     2521 tgccggaacc gctgttcaag acaggcggaa agaccggaac tcacaccaaa gtgtgcatgg
     2581 tcgtcatgcg caagagatct tttcctggag acgaacgact tatcttcatg gcagacgcta
     2641 agtggtgcgg ccatgactcc cggggaaacc cgacgatgcg caaggaagac ggcgaggaag
     2701 ttctccttga cgatgtgccg atcgttgcgc agaactacgt cagctttaag gacagcgggc
     2761 ttgtcccgag cgaccaccta gggttcatgc agccccggga tcagattgtc aacacgattt
     2821 tagta
//
LOCUS       DASVXZ010000009         4722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1614249, whole genome shotgun sequence.
ACCESSION   DASVXZ010000009 DASVXZ010000000
VERSION     DASVXZ010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4722
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1614249"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VF788_00130"
     CDS             <1..511
                     /locus_tag="VF788_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8932614.1"
                     /translation="LGIGRTFQTASVLEELTVLQNLDIAAGAGRGPLSLLRRRSSVPP
                     EVEETLETVKLTQLRNRQAGALAHGQKQWLEIGMLLVQNARVLLLDEPVAGMSADERA
                     QTGELLRRIGADRTVVVVEHDMDFMRSFATSVTVLHAGQILSEGTVAQVQADPRVQEV
                     YLGRTEVAS"
     gene            511..1203
                     /gene="urtE"
                     /locus_tag="VF788_00135"
     CDS             511..1203
                     /gene="urtE"
                     /locus_tag="VF788_00135"
                     /inference="COORDINATES: protein motif:HMM:TIGR03410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter ATP-binding subunit UrtE"
                     /protein_id="HEX8932615.1"
                     /translation="MLTMTDIHVGYGRTTVVHGASVQIPPGGVAAVMGHNGAGKTTLL
                     RAAVGLLQPRAGRILLDGEDITRMRPSERVRRGLGYVPQGQQCFPQLTAEENLQLVAD
                     TRRDGKKLIAEMLDLFPALKGLLSRRAGLLSGGQRQQLAIARALITRPRLLILDEPTE
                     GIQPSVVAEIERTILTLTSRGEMSTLLVEQHVGFALAAASRYYVMEAGRITSTGDGGT
                     DAHEHVRAAMAI"
     gene            1458..1769
                     /locus_tag="VF788_00140"
     CDS             1458..1769
                     /locus_tag="VF788_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932616.1"
                     /translation="MKGDRTEIVIDAGGATRTYEIEATRNGRRVEITHGRGIVEVTEV
                     TRGGTPVRTARFMASRVLALVEHPAERPTARESKSAVPAVPQPRTVSNSAGLHTAEAV
                     S"
     gene            1871..2173
                     /locus_tag="VF788_00145"
     CDS             1871..2173
                     /locus_tag="VF788_00145"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HEX8932617.1"
                     /translation="MLLSPREQEKLLIHVAGQLARERRARGLRLNYPEAVALITSWVL
                     ESARDGRSVADLMAGGQRVLGREDVMDGVPEMITSVQVEATFPDGTKLVTVHRPVQ"
     gene            2185..4236
                     /locus_tag="VF788_00150"
     CDS             2185..4236
                     /locus_tag="VF788_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020631782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEX8932618.1"
                     /translation="MVPGELLPSDEPVVLGPHAGQELLIRNTGDRPVQVGSHYHLAAA
                     NPALEMDRDAATGMRLAVPAGTSVRFEPGIERVVRVVPLGGTRTVPGLRLDAPNPAVT
                     GRPTASGGRWSVERSRYAELFGPTVGDRMRLADTDLLLEVTEDRCRGPHGGDEVVFGG
                     GKVIRESMGQARATRAEGAPDLVITGAVVLDHWGVVKADIGVRDGRIVGLGKAGNPDI
                     MNGVHTALVIGPGTEVIAGNGLILTAGAVDCHVHLISPQQVPEALGSGVTTLIGGGTG
                     PAEGTKATTVTPGSWYLARMLESLDELPVNIALLGKGNTVGEQALYEQVAAGASGFKL
                     HEDWGSTPAAIDACLRVADDTGVQVAIHTDTLNEAGYVADTLAAIGGRTIHAYHTEGA
                     GGGHAPDIITVASAPHVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAE
                     SRIRPSTIAAEDLLHDLGAISMIGSDSQAMGRVGEVILRTWQTAHVMKRRIGALPGDP
                     QTSDNLRARRYVAKYTICPAIAHGLDSEVGSVEVGKLADLVLWQPAFFGVRPSIVLKG
                     GMIAWAAMGDSNASIPTPQPVLPRPMFGAAAVSAAATSVHFVAPAAVQGGLADRLAVR
                     RRLVAVRDTRALRKTDMPLNDALPRIEVDPETFTVRIDGEVAQPQPAEELPMAQRYFL
                     F"
     gene            4247..>4722
                     /locus_tag="VF788_00155"
     CDS             4247..>4722
                     /locus_tag="VF788_00155"
                     /inference="COORDINATES: protein motif:HMM:NF013858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HEX8932619.1"
                     /translation="MLTVALGSLVLADSRLPTGGHAHSGGVEAAVERGLLRDEADLAL
                     FLAGRLRGTGAVLAATAASGCLLAAGAVLENGGPVSSGQVDWGCWDAAVSARTPSAAA
                     REASRAQGAALLRTARRVWPSPPLEALRRTGRPHYPLVLGAVVAAAGDGPGAAALLA"
BASE COUNT          758 a         1507 c         1710 g          747 t
ORIGIN      
        1 cctcggcatc ggacgaacct tccagaccgc cagcgtgctc gaggagctga ccgtgctgca
       61 gaacctcgac atcgcggccg gcgcgggccg gggaccactg tcgctgctgc gccgccgctc
      121 gtcggtgccg cccgaggtcg aggagaccct ggagaccgtg aagctgaccc aactgcggaa
      181 ccggcaggcc ggtgcgctgg cccacgggca gaaacagtgg ctggagatcg gcatgctgct
      241 ggtgcagaac gcgcgggtgc tgttgctgga cgagccggtg gccgggatga gtgccgacga
      301 gcgggcccag accggtgagc tgctgcgcag gatcggagcc gaccgcaccg tcgtcgtggt
      361 cgagcacgac atggatttca tgcgttcgtt cgccacctcc gtcacggtgc tgcacgccgg
      421 acagatcttg agcgaaggca cggtggcgca ggtgcaggcc gatccccgag tccaggaggt
      481 atacctcggc cggacggagg tcgcgtccta atgctgacca tgaccgatat ccacgtcgga
      541 tatgggcgga ccaccgtcgt gcacggcgcg agcgtgcaga taccaccagg cggggtcgcc
      601 gcggtgatgg gccacaacgg tgccggaaag acgactctgt tgcgtgccgc ggtcgggcta
      661 ctccagccgc gggctgggcg catcctgctg gatggcgagg acatcacccg tatgaggccc
      721 agtgagcggg tcagacgcgg cttgggctac gtgccgcagg gacagcaatg ctttccccaa
      781 ctgaccgccg aggagaacct tcagctggtg gcggatacaa ggcgagacgg gaaaaagctg
      841 atcgccgaga tgctggacct ctttcccgcg ctgaaggggt tgctgtcgcg ccgggcaggt
      901 ctgctctccg gcggtcagcg ccagcaactg gccatcgcgc gagcactgat cacccggcca
      961 cggctgctga tcctggacga acccaccgag ggcatccagc cgtcggtggt ggcggagatc
     1021 gaacggacca tcctgacgtt gacctcacgc ggggagatgt ccaccttgtt ggtcgagcaa
     1081 cacgtcggct tcgccctcgc cgcggcaagc cgctactacg tcatggaggc aggccggatc
     1141 acctcgaccg gcgacggtgg caccgatgcc cacgaacacg tccgagcagc catggcgatc
     1201 tgagacggcg tgggtcaccg gaggcgctgg ggtgagcgga agcggggaca gtgatcgtca
     1261 caaccggccg ggaattatgg agggcacagg gtagttgtaa aggatgtccg ggccgggtgg
     1321 ctgtgtcccc gggtccactt tcatctgcca ccgcggacga tcgtttggct gaagctgcgg
     1381 tgcgcctatc gccgagaggc gaccagcacg ctcggtccgg acgcttctca tttcggcgaa
     1441 cctaaggatg gcaagccatg aagggcgatc gcaccgagat tgtcatcgac gccgggggcg
     1501 ccacccgaac ttatgagatt gaggccaccc gcaatggtcg gcgggtggag atcactcatg
     1561 gccggggcat cgtggaggtc actgaggtca cccgtggcgg taccccggtg cgcaccgctc
     1621 ggttcatggc ctcgcgcgtg ctcgccctcg tcgaacatcc cgcggagcgc cccaccgcgc
     1681 gggagagcaa gtccgccgtc ccagccgttc cccagcctcg gacagtgagc aattcggccg
     1741 gccttcacac cgccgaggcg gtcagctgat cagcgtcgcc cggcgggaaa ggccgagtgc
     1801 tttggtgttg cgtccacgac atactcaggc atcccgcagt ttccgaccag ggtgacgagg
     1861 aagggtcagt atgctgctgt ccccgcgcga gcaggagaag cttcttatcc acgtggcggg
     1921 tcagctggcc agggagcgcc gcgcgagagg actgcggctg aactatccgg aggccgtcgc
     1981 attgatcacc tcgtgggtac tggaaagcgc ccgcgacggg cgcagtgtcg ccgatttgat
     2041 ggcgggggga cagcgggtgc tgggccgcga ggacgttatg gacggcgtgc cggagatgat
     2101 cacttcggtt caggtcgagg cgacctttcc cgacggcacc aagctcgtca ccgtgcaccg
     2161 gccagtccag tgagtgacgg atcggtggta cctggagaac tgctgccctc tgatgaaccc
     2221 gtcgtgttag ggccgcatgc tggtcaggag ttgctgattc gtaacaccgg tgaccggcca
     2281 gtgcaggtgg gctcgcacta ccacctcgcc gcggcgaatc cggcgctgga gatggaccgg
     2341 gacgccgcca cggggatgcg gctggccgtt ccggccggaa cgtcggtgcg cttcgaaccg
     2401 ggcatcgaac gggttgtgcg ggtggtgccg ctgggtggta ctcggaccgt gcccggcctc
     2461 cgcctagatg cacccaatcc tgcggtaacg ggcagaccaa cagccagtgg tggccggtgg
     2521 tcagtggaac gcagccggta cgccgagctt ttcggcccca ccgtgggcga ccgaatgcgg
     2581 ttggccgaca ccgacctgct gctggaggtc accgaagacc gctgccgcgg cccgcatggc
     2641 ggtgacgagg tggtgttcgg tgggggcaag gtgatccggg agtcgatggg ccaggctcga
     2701 gccacccggg cggagggtgc accggatctg gtgatcaccg gtgccgtcgt gctggatcac
     2761 tggggggtgg tcaaggccga catcggggtg cgggacggcc ggatcgtggg tctgggcaag
     2821 gccgggaacc cggacatcat gaatggggtg cacacggcgc tggtcatcgg cccgggcacg
     2881 gaggtgatcg ccggcaacgg gctgatcctg accgctggag cggtggactg ccatgtacac
     2941 ctgatcagcc cccagcaggt gcccgaggcg ctgggatcgg gcgtcaccac tctgatcggc
     3001 ggtggcaccg gtcccgcaga gggcaccaag gcgaccacgg tgacgccggg gtcctggtac
     3061 ctggcgcgga tgctggaatc cttggacgag ctgccggtga acatcgctct gctgggtaag
     3121 ggcaacaccg tgggcgagca ggcgctctat gagcaggtcg ccgcaggggc cagcggattc
     3181 aagctgcacg aggattgggg atccaccccg gcggcgatcg acgcctgcct gcgggtcgcc
     3241 gacgataccg gcgtgcaggt ggcgatccac accgacaccc tcaacgaggc gggctatgtc
     3301 gctgacacgc tggccgcgat cggcgggcgc accatccacg cctaccacac cgaaggcgcc
     3361 gggggtggcc acgcgccgga catcatcacc gtcgccagcg cccctcacgt gttacccagt
     3421 tccaccaatc cgacccgccc gcacaccgtg aacacgctcg acgagcacct cgacatgctc
     3481 atggtgtgcc atcacctcaa tcccgctgta ccagaggacc tggcgttcgc ggagagccgg
     3541 atccggccct ccaccatcgc ggccgaggac ctgctgcacg acctcggggc catctcaatg
     3601 atcgggtcgg actcacaggc gatgggccgg gtcggtgagg tgatcttgcg tacgtggcag
     3661 accgcgcatg tcatgaaacg ccggattggc gcgctacctg gggacccgca gacgtcggac
     3721 aacctgcggg ctcgacgcta tgtggccaaa tatacgattt gcccggccat cgcgcacggg
     3781 ctcgacagtg aagtcgggtc agtggaggtg ggcaagctcg ccgacctggt gctgtggcag
     3841 cccgcgttct tcggcgtccg gcccagcatc gtgctcaagg gcgggatgat cgcctgggcg
     3901 gcgatggggg attccaacgc ctccatcccc accccgcaac cggtactgcc ccggccgatg
     3961 ttcggagctg ccgcggtgag cgccgccgcc acctcggtgc atttcgtggc tcccgccgct
     4021 gtgcagggtg gcctggccga tcggctggcg gtgcggcgca ggctggtggc ggtccgcgac
     4081 acccgggcgc tgcgcaagac cgatatgcca ctcaatgatg cgctgccacg catcgaggtg
     4141 gatcctgaga cgttcaccgt gcggatagac ggtgaggtgg cgcaaccgca gcccgcggag
     4201 gaactcccga tggcccaacg ctatttcctg ttctgacggt gacgctgtgc tgacggtcgc
     4261 gttgggatcg ctggtcttgg ccgattcgcg attgcccacc ggcggccacg ctcactctgg
     4321 tggagtggag gcggccgttg agcgcggctt gctgcgggac gaggccgacc tcgcgctgtt
     4381 tctagctggt cggcttcgcg gcaccggcgc agtgctcgcc gcgaccgccg cgagcggctg
     4441 cttgctggcg gcgggcgctg tactggagaa cggtggaccg gtgagcagtg ggcaggtcga
     4501 ctggggatgc tgggatgccg cggtgagtgc ccgcaccccg tcggctgccg cccgggaggc
     4561 ttcccgcgcg cagggggcgg cgctgctgcg aacggcacgt cgggtctggc cgtccccgcc
     4621 gctggaggcg ctgcgccgga cgggccgccc gcactatcca ttggtgctcg gcgccgtggt
     4681 cgcggccgcg ggggatgggc ccggcgcggc ggcgttgctc gc
//
LOCUS       DASVXZ010000010         3484 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_986733, whole genome shotgun sequence.
ACCESSION   DASVXZ010000010 DASVXZ010000000
VERSION     DASVXZ010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986733"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VF788_00160"
     CDS             complement(<1..605)
                     /locus_tag="VF788_00160"
                     /EC_number="2.4.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decaprenyl-phosphate phosphoribosyltransferase"
                     /protein_id="HEX8932620.1"
                     /translation="MTTTAPRQTDTSTRPANAVFGMVRAMRPRQWVKNVLVLAAPFAG
                     GLLFQLHVLIAVGVAFVAFSLAASGVYLVNDVQDVEADRAHPIKRNRPIAAGLVAPQL
                     ALTVAVLLFVSALGISLVASTDLVLVTAIYIAVQLSYCFWLKHQPVVDISIVASGFLL
                     RAIAGGAAAGIALSQWFLLTTAFGSLFMVAGKRYAEIRLAER"
     gene            complement(602..1171)
                     /locus_tag="VF788_00165"
     CDS             complement(602..1171)
                     /locus_tag="VF788_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8932621.1"
                     /translation="MLRRRFSPGTATDHREIALLSAVQRRIAVPQVVTAARGLSHFGE
                     HALGWLALGALGALVDRRRRRDWFVSAATVATAHGTSIAVKRAVRRHRPSDPTVSVLA
                     GTPSQLSFPSSHAASTTAAAVLYGGLLGRRLTPLLVPPMLISRLVLGVHYPSDVLVGS
                     ALGAAIGAGMRRRLRATRSLPGKGQRGRR"
     gene            complement(1171..3174)
                     /locus_tag="VF788_00170"
     CDS             complement(1171..3174)
                     /locus_tag="VF788_00170"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8932622.1"
                     /translation="MPSSTVCSPDRSSASAPEESTSTLLQRVILPRRADPMAVRALYV
                     DERPANVRPARPQVGATGRTASRDVEVVTLAGSGARRVRALSRTSVQVPAQTDVSFAS
                     YFNAFPASYWRRWSTLRTLRLRLAVEGAGRVDVYRSKADATQIHVHGELIEGDRRELD
                     IELDLTPFEDGGWYWFDISTEDSELIVHSGGWHAPIAAPGRAAVTIGMPTFNRPTDCV
                     ATLRAIGEDELVRSVVTAVVIPDQGVNKVRDQDGFASARVVLGDRLRIIDQPNLGGSG
                     GYARVMYEALENTDCEQILYMDDDIVLEPDSILRAVAFSRFSRRPMLVGGQMLQAQAR
                     SRLHAWGEVLDRHRMRWNKAPGTEYDHDFAQHSLRETAWMHRRTDVDYNAWWMCLIPR
                     TVAEDIGLPLPLFIKWDDVEYGVRARAAGYSTATVPGVGIWHMSFADKDDATDWQAYF
                     HLRNRLVGAALHGTEDRPTTMLADSFKHALKHAMAMEYSTLALQEMAIRDFLAGPQAL
                     FEKLPTALGEVRARCAEFTDGQVVDSQELPLPAGGRQEAQRMLKPPTNPVTIGATLLK
                     RLAHQLRSVDTRAQHRPQLSLSRQDARWFVLSALDGVTVSTADGRGVTYRKRDPRVFR
                     SMLARSVALHRELAREFPQLRQRYRAAAPELTGRTGWKRVFDA"
BASE COUNT          596 a         1117 c         1225 g          546 t
ORIGIN      
        1 cgttcggcga gacggatctc ggcgtagcgc ttaccggcca ccatgaatag cgacccgaat
       61 gcggtggtga ggaggaacca ctgagacagc gcgatccccg ccgcggcgcc gccggcaatg
      121 gcccgcaaca ggaagcccga cgcgacgatg gagatgtcca ccaccggctg gtgcttgagc
      181 cagaagcagt acgacagctg cactgcgatg tagatcgccg tgaccagcac gaggtcggtc
      241 gaggccacta gggagatccc gagcgcggac acgaacagca gcaccgccac ggtgagcgcc
      301 agctgtggtg ccaccagccc agcggcgatc ggccggttgc gtttgatcgg gtgcgctcga
      361 tcagcttcga cgtcctggac atcgttgacc agataaacac cggaagcggc gagtgagaac
      421 gcgacaaagg ccaccccgac tgcgatgagc acatgcaact ggaacaggag accgccggcg
      481 aagggcgctg ccagcaccag aacgttcttc acccattgtc ggggtcgcat ggcgcggacc
      541 atcccgaaca ccgcattggc gggccgggtg gaggtgtcag tctgccgcgg cgcggtggtg
      601 gtcatcgccg tcctctctgg cccttaccgg gcaaggatcg agtggcgcgt agccgtcgtc
      661 gcattccagc gccgatggcg gcacccagcg cggaacccac gagaacgtcg ctcgggtagt
      721 ggacgcccag caccagtctg ctgatgagca tgggaggtac cagcagcggg gtaagccggc
      781 ggcccagcag accgccgtag aggaccgccg ctgcggtggt tgaggcagcg tgcgaggacg
      841 ggaaggacaa ctggctcggt gtgccggcca gcaccgagac cgtcggatcg ctcggacggt
      901 gccggcgcac cgcgcgcttg actgcaatcg acgtgccgtg cgcggtggcc accgtagctg
      961 cggagacgaa ccagtcgcgc cggcgccgcc ggtcgaccag ggcgcccagt gcacccagcg
     1021 ccagccagcc cagagcgtgc tcgccgaaat gtgacagtcc gcgggcggcg gtcacgacct
     1081 gaggtaccgc gatcctgcgc tgcacagccg agagcagcgc gatctcccgg tggtcagtgg
     1141 cagtccccgg agaaaaccgt cgtcgcaaca tcatgcgtcg aacacccgtt tccagccggt
     1201 gcgaccggtg agttccggcg cagcggcgcg gtagcgctga cgcagctggg ggaattcccg
     1261 ggccagttcc cggtgcagtg ctaccgatcg ggcgagcatc gagcggaaca ctcgggggtc
     1321 tcgcttgcgg taggtgacac cgcgaccgtc cgcggtcgag acggtcaccc catccagcgc
     1381 cgagagcacg aaccaccgag cgtcctggcg ggacagcgac agttgcgggc ggtgctgcgc
     1441 tcgggtatcg accgaccgca gctggtgggc cagacgcttg agcagggtcg cgccgatggt
     1501 caccgggttg gtcggtggtt tcagcatgcg ctgcgcctcc tggcgtccac cggccggcag
     1561 cggcagctct tgcgagtcca ccacctgccc gtcggtgaac tccgcacagc gggcccggac
     1621 ctcacccagc gcggtgggca gtttctcgaa cagcgcctgc ggtccagcca ggaagtcccg
     1681 gatcgccatc tcctgtagcg ccagggtgga gtactccatc gccatcgcgt gcttgagggc
     1741 atgtttgaag ctgtccgcga gcatggtcgt gggccggtct tcggtgccgt gcagcgccgc
     1801 gccgaccagc cggttgcgca ggtggaaata tgcctgccaa tcggtggcgt cgtccttgtc
     1861 ggcgaaggac atgtgccaga tgcccacgcc gggaacggtg gccgtggaat aacccgcagc
     1921 gcgggcccgc accccgtact cgacgtcatc ccatttgatg aacagcggca ggggaagacc
     1981 tatgtcctcg gccactgtgc gcgggatcag gcacatccac caagcgttgt agtccacgtc
     2041 ggtgcgccgg tgcatccagg ccgtctcgcg cagggagtgc tgggcaaaat cgtgatcgta
     2101 ttcagtgccc ggcgccttgt tccaccgcat ccgatgccgg tcgagcacct caccccaggc
     2161 gtgcagccgg gaacgggcct gggcctgcag catctgcccg ccgacgagca tcgggcgacg
     2221 agagaaccgg gagaaggcta cggcgcgcaa gatcgagtca ggctcgagga cgatgtcgtc
     2281 gtccatgtag aggatctgct cgcagtcggt gttctccagc gcctcataca tgacgcgcgc
     2341 gtaaccgccg gaaccaccga ggttgggctg gtcgatgatc cttagccggt cgccgagcac
     2401 cacccgggct gaagcgaaac cgtcttgatc acggaccttg ttgacgccct ggtcggggat
     2461 cactactgcg gtcacgaccg agcggaccag ctcgtcttcc ccgatcgctc ggagggtggc
     2521 cacacagtcg gtggggcggt tgaacgtcgg catcccgatc gtcaccgcgg ctcggccggg
     2581 tgcggcgatg ggcgcgtgcc agccgccgga gtgcacgatc agctccgagt cctcggtgct
     2641 gatatcgaac cagtaccacc cgccatcctc gaagggggtc aggtccagct cgatgtccag
     2701 ctcgcgacga tcgccttcga tcagctcgcc gtgcacgtgg atctgggtcg cgtcggcctt
     2761 ggatcggtag acgtcgacgc gtcccgcgcc ctcgacggct aaccgcaggc gcagggtgcg
     2821 cagcgtgctc cagcggcgcc agtaactcgc ggggaatgca ttgaagtatg acgcgaagga
     2881 cacatcggtc tgggcgggaa cctgcacgct cgtgcgggac agcgcgcgca cccggcgtgc
     2941 gcccgaaccg gcgagggtga ccacctcgac gtcgcgtgac gcggtccggc cggtggcacc
     3001 gacctgcggc cgcgccgggc gcacattggc cggccgctcg tcgacgtaaa gcgcgcggac
     3061 ggccattgga tcggcccggc gaggcaggat cacccgctgc agcagcgtcg aggttgactc
     3121 ctccggcgcg ctggcacttg atcggtccgg gctacagacg gtgctgctcg gcatgaactc
     3181 cccagtcctg gcgaggtagc ggtgtcggcg tcgccagagg gtaacgctag gcagcgaccc
     3241 agttccgggc gcccacccgc ttcgggacat agccgcaggt agatcgactg actgttgggc
     3301 ggatgtccct ggatgatcac cgagattcga atttcctcat cgtgggagtt gatgatcgcc
     3361 caggccatgg gtagctggtt ggtgcgggtt tcgggtggtg ggcgatggtt gggttgaaga
     3421 aggtgccggt gaggtggttg tcggcgttgt agatgcttga gggggagatc tggccctggt
     3481 agtc
//
LOCUS       DASVXZ010000011         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_180800, whole genome shotgun sequence.
ACCESSION   DASVXZ010000011 DASVXZ010000000
VERSION     DASVXZ010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180800"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1209)
                     /locus_tag="VF788_00175"
     CDS             complement(<1..1209)
                     /locus_tag="VF788_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8932623.1"
                     /translation="MLEEDPQSEEIIARVAALDVGKAELVCCVRVPHETKPGRRLQEV
                     QSYSTMTGSLLEMSDHLRCLGVRRVVMEATSDYWKPVYYLLEAQGLDPWLVNAKDVKH
                     LPGRPKTDKLDAVWLCKIAERGMICPSFVPPPEIRRLRDVSRYRIDLVGVRTAEKQRV
                     EKLLEDAQIKLSVVASDIFGVSGREMMAALTGGQTNPKALAQLARGRMRAKLDALEEA
                     FTGHFTDHHAMLLTKMLARIDALDADIAELDAAIEEMIAPFAAAVARLDDIPGVGTTA
                     ARVILAEVGLDMSRFPTPAHLASWARFAPGVKESAGKRKGKGTTGHGNRYLARALGEA
                     AVAAGKTDTFLGERYRRLARRRGKKRAIVAVGRSILVIVWHLLSDPQVRFVDLGSDFY
                     DNRTSPERKKR"
BASE COUNT          295 a          544 c          456 g          247 t
ORIGIN      
        1 acgtttcttg cgttccgggc tagtgcggtt gtcgtagaag tcggagccga ggtcgacaaa
       61 gcggacctgg ggatcagaca gcaggtgcca gacgatcacc aggatggagc gcccaaccgc
      121 gacaatggcc cttttcttgc cgcggcgtcg ggccaggcgc cggtaacgtt ccccgaggaa
      181 ggtgtcggtc ttgccggcag ccacggcggc ttctcccagc gcgcgggcca gatagcggtt
      241 gccgtgcccg gtggtgccct tgcccttgcg cttgcccgcc gattccttga ctccgggggc
      301 gaagcgggcc caggaggcca ggtgggctgg ggtgggaaac cgggacatgt ccagccccac
      361 ctcggcgagg atcacccgtg ccgcggtagt cccgactccg gggatgtcat ccaggcgcgc
      421 caccgcggcg gcgaaagggg cgatcatctc ctcgatcgcg gcgtcgagct cagcgatgtc
      481 ggcatcgagg gcgtcgatgc gggccagcat cttggtcagc aacatggcat ggtggtcggt
      541 gaaatgcccg gtgaacgcct cctctaacgc gtcgagtttg gcacgcatcc ggccccgcgc
      601 tagctgcgcc agcgccttgg ggttggtctg cccaccggtc agcgcggcca tcatctcccg
      661 gccggagacc ccgaagatgt cactggccac cacggagagc ttgatctgtg catcctccag
      721 tagcttttcc actcgctgct tttcagccgt gcgcaccccg accagatcga tccgataccg
      781 actcacatcg cgcaaccggc gaatctcggg cggcggcacg aaactcgggc agatcatgcc
      841 ccgctcggcg atcttgcaca accacaccgc gtcgagcttg tccgtcttgg gacggcccgg
      901 caaatgcttg acatctttgg cgttgaccag ccacgggtcc aacccctggg cctccagcag
      961 gtaatacacc ggcttccaat aatccgacgt ggcttccatc accacccggc gcacccccaa
     1021 acaccgcaaa tgatccgaca tctccagcag cgagcccgtc atcgtggaat acgactgcac
     1081 ctcctgcaac cgccgccccg gcttggtctc atgcggaacc cggacacaac acaccagctc
     1141 ggccttgccg acatccaacg ccgccacccg cgcgatgatc tcctcactct gcggatcttc
     1201 ctccagcaca accaacaccc tccccctgcg tcgtggcaca ccactgtcag cggctgcccg
     1261 caggaactac cagggctcaa gcgaatctga tccgcgtgct caaagcaaac actgaacagc
     1321 ccacagggca gctcccaacg cccgactaat ccacgacctc aacccgatca aggaacaacg
     1381 acgtcagcga acagccgacc cattttcagc ccggaacggg ccgcccaaca gggggatcgg
     1441 ggactaatcc accgcatcgg agctaccggg tctggcggcg tcgagatggc agcgcggtgc
     1501 ccacgacgag caggagtagt acggcctgga tcaacaggag cg
//
LOCUS       DASVXZ010000012         2013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_986872, whole genome shotgun sequence.
ACCESSION   DASVXZ010000012 DASVXZ010000000
VERSION     DASVXZ010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986872"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..520
                     /locus_tag="VF788_00180"
     CDS             <1..520
                     /locus_tag="VF788_00180"
                     /inference="COORDINATES: protein motif:HMM:NF018479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEX8932624.1"
                     /translation="AQLHHALAEGNAAHAVAGYAAVFFGIWWAWVNFTWFASAYDTDD
                     VPYRILTLVQRGGVLVLAAGIPAAFDRFDFTIVVIGYVIMRLVLVTQWLRAAREHPDG
                     RSGTLRYAVGVALVQAAWIGRLWLPGLAGWIGFAVLVAAELAVPVWAEFEVAPGFVDF
                     QAAVPRLAPAAR"
     gene            566..1867
                     /locus_tag="VF788_00185"
     CDS             566..1867
                     /locus_tag="VF788_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011895475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8932625.1"
                     /translation="MGKKYQNDKRDTSQPAVPEHVSVALGELVGEVREGLLALAVGTG
                     LQVLTAMMEADVTAACGPKGRHDPGRTATRHGHEAGSVSLGGRRVPVSRPRMRASDGS
                     GELAVPIYELFSGTEVLGRMAMERMLAGLSTRRYPVGLEPVGARVEQAATATSKSAVS
                     RRFVAATETALGELLAADLSGLDLVALMVDGVHFGEHCCVVALGIDIDGIKHPLSLVE
                     GSTENATLVRELLVGLRERGLDVTRPILVVIDGAKALRRGVLDVFDHPVIARCQLHKI
                     RNVHDRLPKKLRSVVAKRMRAAYRAETAVAAQAQLESLAGELERTHPGAAASLREGLA
                     ETLTVLRLGVPPTLARSLRSTNCVENMIGIARDHSRNVKRWRNGQMALRWCAAGMVEA
                     RAQFRRINGHLHLRTLRAALERHVAAENVGPVDDNDTVIAA"
BASE COUNT          300 a          665 c          722 g          326 t
ORIGIN      
        1 agcgcagttg caccacgctc ttgccgaggg caacgcggcc cacgctgtag cgggttacgc
       61 ggcggtgttc ttcgggatct ggtgggcgtg ggtgaatttc acctggttcg cctcggccta
      121 cgacaccgac gacgtgcctt accggatctt gacgctggtg cagaggggtg gggtactggt
      181 cctcgccgcc ggcatcccgg ccgcgttcga ccggttcgac ttcaccattg tggtgatcgg
      241 gtacgtgatc atgcggctgg tgctggtgac gcagtggctg cgcgcagccc gagagcaccc
      301 cgacggccgg tccggcacac tgcgctacgc cgtcggtgtc gccctggtgc aagccgcctg
      361 gatcggtcgg ctatggcttc ctggcctggc cggctggatc ggctttgcgg tgctggtggc
      421 cgccgaactc gcagtacccg tgtgggccga gttcgaggtt gccccagggt tcgtagattt
      481 tcaggcggcg gtcccccgcc tggcgcctgc cgcgcggtag gcactcgggt ggtcgaccaa
      541 gaacacctcg aagaagggga ccgccgtggg aaagaagtac cagaacgaca agcgcgatac
      601 gagccagcct gccgtacccg agcacgtcag tgtggcactg ggtgagctgg tcggtgaggt
      661 tcgtgagggg ctgctggccc ttgcggtcgg caccgggctg caggtgttga ccgcgatgat
      721 ggaagccgat gtcaccgcgg cctgcgggcc taagggccgc cacgacccgg gacggaccgc
      781 gacccggcac ggccacgagg ccggttcggt gagtctgggc gggcggcggg tgccggtgag
      841 ccggccccgg atgcgcgcca gcgacgggtc tggggagctg gcggtgccga tctacgagct
      901 gttctccggc accgaggtgc tcgggcgcat ggccatggag cggatgttgg ccgggttgtc
      961 cacccggcgc tacccggtcg ggctcgaacc ggtcggcgct cgtgtcgagc aggctgccac
     1021 cgccaccagc aagtcggcgg tctcgcgccg gttcgtcgcc gcgaccgaga ccgcgctggg
     1081 cgagctgctg gccgccgatc tgtccgggct ggatctggtg gcgctgatgg tcgatggggt
     1141 gcacttcggc gagcactgct gtgtggtcgc cttgggcatc gacatcgacg ggatcaagca
     1201 cccgttgtcg ctggtcgaag gctccaccga gaacgccacc ctggtgcgcg agctgctggt
     1261 cgggctgcgt gagcgcggcc tggatgtcac ccgcccgatc ctggtcgtga tcgacggtgc
     1321 gaaggctctg cggcggggtg tgctcgacgt gttcgaccac ccggtgatcg cccgctgtca
     1381 gctgcacaag atcagaaatg tgcacgatcg actgccgaag aagctgcgct cggtggtggc
     1441 caagcggatg cgcgcggcct accgcgccga gaccgccgtg gccgcccaag cccagctgga
     1501 gtccctggcc ggcgagctgg agcgcaccca ccccggcgcg gccgcctccc tgcgcgaggg
     1561 gctggccgag acgctgaccg tgctacggct gggggtgcca cccaccctgg cccgctcctt
     1621 gcgctcgacc aactgcgtgg agaacatgat tggaatcgct cgcgaccact cccgcaacgt
     1681 caaacgctgg cgcaacggac aaatggcctt gcgctggtgc gccgcgggaa tggtcgaagc
     1741 tcgcgcccag ttccgccgca tcaacggcca tctgcaccta cgcacgctgc gggcagccct
     1801 cgaacggcac gtcgccgccg aaaatgtcgg tccggtagac gacaatgaca ctgtgatcgc
     1861 cgcttaacga tcactggacc gccgccgaaa atctacgacg ctcgggacat cctcaggccg
     1921 ccagcggaat acctttgccg accaccatcc cggggacccg caggccggcg aagccgaacc
     1981 cgccgatgag cccggcgtgg gagtcgccga acg
//
LOCUS       DASVXZ010000013         2686 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1614429, whole genome shotgun sequence.
ACCESSION   DASVXZ010000013 DASVXZ010000000
VERSION     DASVXZ010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1614429"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..502)
                     /locus_tag="VF788_00190"
     CDS             complement(<1..502)
                     /locus_tag="VF788_00190"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8932626.1"
                     /translation="MGLDLHRRRTVMVCMTEAGERLEAVRFVSDPAVLAEQIAKAGPA
                     PRVVVEATYAWYWVADVLDAAGAQLHLAHPLGVKGFAYRRVKNDFRDAADLADLLRMG
                     RLPEAWIAPPPVRAQRELVRTSTQAASVVFGDQDRRARGAGQECAVHSPLGYVRSGRT
                     TPAVRVE"
     gene            1959..>2686
                     /locus_tag="VF788_00195"
     CDS             1959..>2686
                     /locus_tag="VF788_00195"
                     /inference="COORDINATES: protein motif:HMM:NF033564.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEX8932627.1"
                     /translation="MPAPSSSPIHPVLEQLAAAADIGRFAGAGVVAALAKVPDPRASD
                     QVSSRAGGGGLPTPCESTIRRTLQRLDGDELDTAMGGWAAARTKPPAGRRRVVALDGK
                     TVRGSASDAADARHLLGAIDQRTAVVLGQVNVERKTNEISMFPLLCERIDDLSDAVIT
                     VDALHAQRSHADYLVLQRRAHYLLTVKGNQPHLLHQLKTLPWKDVPAAHTSTTCAHGR
                     MEQRCVKLVTVATGIVFPHARQAI"
BASE COUNT          506 a          875 c          793 g          512 t
ORIGIN      
        1 gttcaacgcg gacagccggc gtcgtccgtc cagaccgaac atatccgagc ggggaatgaa
       61 cagcgcattc ttggccagca ccgcgtgcgc gccggtcttg atccccgaac acaactgacg
      121 cagcttgtgt cgacgtgcgc accagctcgc gctgcgcacg taccggcggt ggcgcgatcc
      181 aggcctcggg caaccggccc atccgcaaca aatccgccag gtccgcggca tcgcgaaaat
      241 cattcttcac ccgccgatac gcgaaaccct tgacccccag cgggtgcgcc aaatgcagct
      301 gcgcaccggc cgcgtccaac acatcggcga cccagtacca ggcatatgtg gcctccacga
      361 cgacccgcgg cgccggcccg gccttggcga tctgctcggc cagcaccgcc ggatccgaga
      421 cgaaacgcac cgcttctaac cgctcacccg cctcggtcat gcacaccatc accgtgcggc
      481 gccgatgcag atccaatccc acgacctgcg gtcctgccta ccctgtgtcc ataaggggcc
      541 tcctcaaacc gaatcggttg atctgagcac tcccaagcgt ccgctcggga gcaacccaca
      601 aggagcggag accccgcccc tttcatcgca tcaacttgcg gcagctggaa tgatcgtcgg
      661 gttggtcggg gggtggagag aggctggagc tggtggatgt cgaggtgccg tcatgccagg
      721 gatttcgccg cgcggtcgct gacccgaacg cggcgattcc ttaaatcgcg tttgttccaa
      781 gccggccagt tcgacgtcaa tttggctagc gagctcaaga tcgcgatatc tgccgggtga
      841 gcctaccatt agtctccact gcactcaccg gctgctgcta cagcgagacc atcgaccatc
      901 cggacaagcg aaatttctag ggccgaagta ttgtggtctc ggtcgctgtt ctagggatcc
      961 ttggtcccta gaactttgac acttgagcca agttcccggg agagcgtagc gttcttatcg
     1021 tccgcttcca cacaggcgtt ttgaccagcc acgatgggtg gcacaacgac ggtgacttag
     1081 gcttaggtcg cccgattcgg cgcagcggat ggcgacggtc cgccgacaca gaccgggagt
     1141 cccctgcggg agcttgcgct caggaagccg cagggaccat ttggcttgcc cacagacttg
     1201 gcgatccgag gcgaagcctc tctagtgatc aaagcgtagc gaaccccctc atgcattgga
     1261 atagctctgc ttgacttcct cctgtgggac gtctctatgc tgaggtgtga caggttgcgg
     1321 atctgaaggt gtccctttgt tcgtagctga cctcgtacga attgctcacg tttcctcgga
     1381 ctggaacact tggcggtgac atggtgatca taatcctgct ggccgctccg ttggcgctgc
     1441 taatcataaa cgtgatcgca gcgaagatcg taatcgaaaa gcatttcaaa ttgcaggcat
     1501 tccagttctg gtccatggtt gcgctatctg gattttggtc cccgttgggc tgatctacca
     1561 gtatggtcct cactggcttg catgggcgag cctgccgccc ctcgtgttaa gctggcaatt
     1621 ctacagtatt cattgtctcg ggcgacaggt caggcgcgcc gctgcgacat tcaaccaggc
     1681 tctaagcctg ttggacaact ataggaaaac cggtcggctc gacgagctta gtgccgcgat
     1741 cgaattgttt cgcggcgtag cagctgctct cccggccgat gactccaatt atgctgtggg
     1801 tgccgaactg gccatccacc agggctccgg caaagtcatt gatggttggg cttgagctgc
     1861 ggtgatggag ggcgacacgc cgggcagata acagggacgg gcatggccct gttgttgatc
     1921 ataaaggttc ctacgccagt tgatcaccag aaggaaccat gcccgcgccc tcatcatcgc
     1981 cgatccaccc tgtccttgag cagctggccg ccgctgccga tatcggcagg ttcgccggcg
     2041 cgggtgtggt ggctgctctg gcgaaggtgc ccgatccgcg ggcctctgac caggtttcta
     2101 gccgcgctgg aggtgggggg ctgcccaccc cgtgtgagtc gactatccgg cgcaccttgc
     2161 aacggctgga tggcgacgag ctggataccg cgatgggtgg ctgggccgcc gcacgtacca
     2221 aaccgcccgc gggccggcgg cgggtcgttg ccctggatgg taagacggtg cgcggctcgg
     2281 ccagcgacgc cgccgacgcc cggcacctac tgggcgcgat cgaccagcgc accgcagtgg
     2341 tcctcggtca agtcaacgtc gagcgcaaga ccaacgaaat ctcgatgttc cccctgctgt
     2401 gcgagcgcat cgacgatctc agcgatgcgg tcatcacggt ggacgcgctg cacgcgcagc
     2461 gaagccacgc cgactacttg gtgctccagc gccgggccca ctacctgctc accgtcaaag
     2521 gcaaccagcc ccacctgctt caccagctca agaccctgcc ctggaaagat gtcccggccg
     2581 cacacacctc caccacctgc gcccacggca ggatggaaca gcgctgcgtc aaactcgtca
     2641 ccgtagcgac cggaatcgtc tttccccacg cccgccaagc catcca
//
LOCUS       DASVXZ010000014        12786 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1525717, whole genome shotgun sequence.
ACCESSION   DASVXZ010000014 DASVXZ010000000
VERSION     DASVXZ010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12786
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1525717"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            8..2692
                     /locus_tag="VF788_00200"
     CDS             8..2692
                     /locus_tag="VF788_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 N-terminal
                     domain-containing protein"
                     /protein_id="HEX8932628.1"
                     /translation="MGGRTAAPVTTSSDGGDIGSSLPDRLRVHALAKLLSVSSKEVMA
                     ALSELGVAVRSAQSSIDRATALRALQVLLPEPGPDPMELDEVVPQSGLETPLSPTSDS
                     AARPPGLDSAVRPPVFNAAAPVFLPPAPQLMTVDELDLDSDHEDEASPAETGADEAET
                     DANTRRRRRRGRRGRGRGKAGGDTEDGSEQDDSDSSDEVTEDRVAEVPPGEEPGEGVV
                     RRRRRRRRRRDGSDDDTLLDEDDPPDTVVHVRESKLQPLVEDEVQSIRGSTRLEAKRQ
                     RRRDGREAGRRRVAILSESEFLARREAVERTMVVRERPDRTQIAVLEDDILVEHFVTT
                     SGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAAGLEGKARRIEQ
                     ALSSGDCVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGGRATGISRKLPDTERKRL
                     KEVLKRIVPDDAGVIIRTASEGVSEEELSRDVRRLQAQWEVIRSKSAVSADGSGASGS
                     KANAPELLYEEPDLLVKVVRDLFTEDFRELVVQGDIAWDTVEGYVKHVAPELMPRVRR
                     YTGTGDVFAEFRIDEQIIKALDRKVWLPSGGYLIIDRTEAMTVIDVNTGKFTGSGGNL
                     EETVTRNNLEAAEEIIRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTR
                     HQVAEVTSLGLVQMTRKKVGTGLLEAYSTTCEHCKGRGVLVSGEPAAVRNQSAPVSAG
                     PPSGASSGAKESGTANGRRSRSRGRGSGNATSAPEQTASSTPVAAAVASADLPQPATS
                     SDNAQSDNAAQADSAAQADSAAQAEPVVATQQAPPAADSPAADSPSVPAQLAPRTMAR
                     RRRTASRPAGPPATELSEGVDPAVPVVRSNARGVSTPV"
     gene            2851..3153
                     /gene="rplU"
                     /locus_tag="VF788_00205"
     CDS             2851..3153
                     /gene="rplU"
                     /locus_tag="VF788_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEX8932629.1"
                     /translation="MYAIVKTGGKQYKVAVGDVVEVEKLVGEPGTEVSLSAVLLVDGP
                     TVTATGLSATSVRGKVIAQVKGPKIRIHKFKNKTGYHKRQGHRQQLTRVEVTGIDR"
     gene            3195..3452
                     /gene="rpmA"
                     /locus_tag="VF788_00210"
     CDS             3195..3452
                     /gene="rpmA"
                     /locus_tag="VF788_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEX8932630.1"
                     /translation="MAHKKGASSSRNGRDSNAQRLGVKRFGGQAVNAGEILIRQRGTK
                     FHPGVHVGRGRDDTLFALESGSVQFSTRRGRKTVNIVPAEV"
     gene            3557..5008
                     /gene="obgE"
                     /locus_tag="VF788_00215"
     CDS             3557..5008
                     /gene="obgE"
                     /locus_tag="VF788_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEX8932631.1"
                     /translation="MSRFVDRVVIHVAAGDGGHGCTSVHREKFMPLGGPDGGNGGRGG
                     DVVLVVDPGVHTLLDFHYRSQVVASSGKPGQGSNRNGAVGEDRELRVPDGTVVLTLSG
                     EMLADLMGEGTRFVAAAGGRGGLGNAALASRTRKAPGFALLGEPGESRELVLELKSVA
                     DVGLVGFPSAGKSSLVSVVSAARPKIADYPFTTLVPNLGVVTAGETVFTIADVPGLIP
                     GASQGKGLGLEFLRHIERCAVLVHVVDCATVAPGRDPLSDVDALERELAAYTPTLGDD
                     LAQRPRLVVLNKIDVPDARELAEMVRPELEARGLPVHCVSTVTTEGLRELRFALGAAV
                     RAHRASLPPAEPARVVLRPTAVDESAFQIVPDPDRPEGFIVQGVRPQRWVRQTNFDNA
                     EAVGYLADRLARLGVEEALAGAGARAGCPVTIGDVTFDWEPTTPAGAAAIRLSGRGTD
                     WRLDSDERTSAAQRKSARVARREPTAGDEDEQM"
     gene            5005..6105
                     /gene="proB"
                     /locus_tag="VF788_00220"
     CDS             5005..6105
                     /gene="proB"
                     /locus_tag="VF788_00220"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEX8932632.1"
                     /translation="MSPTREAVAQARYLVVKIGSSSLTTAAGELDRARLDALVDAFAA
                     RVAAGTQLVLVSSGAIAAGLVPLGLRRRPRDLATQQAAASVGQLVLGHAYTESWARHG
                     HTVGQVLLTFDDMVRRAHYRNAQRTFARLRGLGVVPVVNENDTVATDEIRFGDNDRLA
                     ALVAHLVGADAVVLLSDVEGLYDSDPRLGRAHLIPEVRGPADMRGVQLGTGGALGTGG
                     MVSKLDAATVASQAGVPVLLAAATQVRRALGSADVGTAFAPTGTRLSARRFWLRHAAG
                     TVGRLQLDDGAVSAVVHRRRSLLAAGITGVEGEFEAGDVVELINPRGIVVARGMVGFD
                     AAELAELIGRSTRDLPPELRREVVHADDLVPV"
     gene            6251..7516
                     /locus_tag="VF788_00225"
     CDS             6251..7516
                     /locus_tag="VF788_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX8932633.1"
                     /translation="MQARVDSGTAAEVVAGCARRAQHAASALATASAESIDAVLEAMA
                     QRLKGCATEVLAANTADIAAAEQSGMTQALVDRLRLGEERLTEMANQLALLAQLPFPP
                     RDRVLEDRPDGLRLIERRRPIGVVGATFEARPNVTVDVASQLVKSRNAGVLRTGSAAL
                     RSALALNEHVIALALADAGLDPDAIQLVPDPRRDSAVALVQQPELIPLVIVRGSGETT
                     RMLAAEGARHGVRVLAHAEGGGVLYIDPAADPALAVELLIAGLDRLGVCNRVNLLLVA
                     DRTPDGVYDTLLETARRRGIELSMPPHSHPLGHEWALDTGREATLSVSRVRGPRHAAQ
                     IANQETSGLAATIVTSDESAAREFLDSYAGTGAFWNASTRLLDGFKLRRVPETGINVD
                     RVPGPRGPVTFADLYLRQFVIIPVGSSFG"
     gene            complement(7488..9530)
                     /locus_tag="VF788_00230"
     CDS             complement(7488..9530)
                     /locus_tag="VF788_00230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932634.1"
                     /translation="MTTGSLSEASSRELALIDALGSGCVVECSNLTVEQLATTENPRY
                     SVRAELLRELVLGRGDERLDPLGVRLHGARITGTLDLTHVPAAVGMELRGCFFDHDVL
                     LVSARLPWLTLAGSHLSALDGDGLQVDGDVLLGDGFTATGRGDYGAVRLLGAHIRGQL
                     NFNGARLSNEAGPALVGDGLHVDGDVFGGGFIVSGAGELGAVRLPGARIVGQLNLNGA
                     ELANQSGPALIADGLHVSGGLVLAEGFTATGHYERGAVRLPGAQISGQLNMDGAALIN
                     PAGPALIGDHLDVKGGVFLDGFTASGHGEDSVLRLPDAHISGQLNLDRAELTNPAGPA
                     LIGDHLRVDSDMFAEGFTATGHCQDGAVRLADAHIGGQLNLSHARLTNQVGRALIGDH
                     LQVDSDMFAEGLTATGHCQDGAVRLADAGISGQLNLSHAKLTNPAGPVLDLDDAAAKH
                     VFLPAHVICPQGGAAGPSCASAPRLTLSGLSYTSLHAVDWQEWLHLITHHTRDYRPQP
                     YQQLVAALKASGQESTARKVLIAQQRDRYHRGELGGRLIKIAHWLWGALAGYGYRSSR
                     AVLALLLVLVAAAGLGVAAGHTLTGPGRYVTTHTSQALAPNSPCSLIEQIGAGIDRSL
                     PLAPAAIGNRCDFDTSSPTGQAFTAITWMLQALVWTLAALAIAGYLDLIRRTSPPG"
     gene            9644..10240
                     /gene="nadD"
                     /locus_tag="VF788_00235"
     CDS             9644..10240
                     /gene="nadD"
                     /locus_tag="VF788_00235"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEX8932635.1"
                     /translation="MSGCRLGVMGGTFDPIHHGHLVAASEVQSRFELDEVVFVPTGIP
                     WQKGEREVSSAEDRYLMTVIATASNPRFSTSRVDIERRTPTFTVDTLTDLRTQFPRHE
                     MFFITGADALAQILSWKRVDELFDLAHLVGVTRPGFRLDGKHLPDRAVSLVEVPAMTI
                     SSTDCRERVGRGQPVWYLVPDGVVQYISKRGLYRSPRH"
     gene            10416..10637
                     /locus_tag="VF788_00240"
     CDS             10416..10637
                     /locus_tag="VF788_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932636.1"
                     /translation="MTYEPQRRYRSPIVGDLRLPPDDAVEEEASRVDPDEKVPMLSEL
                     NVRYPGGLLAVREAFFALWSQYASRAGGS"
     gene            10671..12071
                     /locus_tag="VF788_00245"
     CDS             10671..12071
                     /locus_tag="VF788_00245"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEX8932637.1"
                     /translation="MIPGLAFVAPKLYQCVLSRRDLRDLVEDDQQRAAHNGVPTTVFR
                     VWPDYEVEPQIDRSAATVKADAAWRSFAACGKKIVWAVIDSGIDAEHPHFCELELAAE
                     GRGDNLPNGLSSGLHRDFSYLVNPGNPLQPAAPAAAVAAGAPGLAVIPDTRTALVDDS
                     GHGTHVAGIIAGCTPPGAQPRVADSQEAKDGGFVQRERNSMLSGMARACELVSLKVMR
                     RSHQGTWVTSSAAVIRALTYLRIEVNVDPGLLRVHGVNMSLGCAWRPDQYAAGQSPLC
                     QAVNQLVGAGVVVVSAGNYGARSAAGDGANTSAIMGSVTEAAHAQDCIAVGSTHREAP
                     HVFGVSWTSGKGPTLDGRMKPDVVALGEWIASAATGEVRAKAGLKATPEEVAAADPVG
                     KRDLLLTYAELSGTSMAAPHVSGVIAAFLSARREFIGRPQLVKSLLTGSATELGRERY
                     AQGAGLADLMRILTSV"
     gene            12089..12280
                     /locus_tag="VF788_00250"
     CDS             12089..12280
                     /locus_tag="VF788_00250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932638.1"
                     /translation="MKQLPTGEPVWDLKFDEKGGMDPRDRQTILDEIDADNLADLFIF
                     SHHHLTTMTSRTRAKPRYC"
     gene            12406..>12786
                     /locus_tag="VF788_00255"
     CDS             12406..>12786
                     /locus_tag="VF788_00255"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932639.1"
                     /translation="MLSYNVTKTRAGDIGRSGLGTLLAELHRRSPGLRVHLIGHSFGA
                     RLVSFALSGVGEPADSPIASLLLLQGAFSHWSFAHAQDNPFGKPGALNAWANRVHGPL
                     VATFSVYDWAVCRWYPKASFLAQDD"
BASE COUNT         2148 a         4156 c         4381 g         2101 t
ORIGIN      
        1 cggaggcatc ggcgggcgga cagccgcacc cgtgaccacc tcgtcggacg ggggggacat
       61 cggatcgtcg ctgccggaca ggttgcgcgt gcatgctctg gccaagctgt tatcggtcag
      121 tagcaaggag gtcatggcag cgctgtccga gctcggagtc gcggtacgca gcgcgcagtc
      181 cagcatcgac cgtgcgacgg ccttgcgggc gctgcaggtg ctgctaccgg aacccgggcc
      241 tgatccgatg gaacttgacg aggtggtgcc gcagagcggg ctggagacac ccttgtcgcc
      301 gacgtcggat tcggcggctc ggccgccagg gcttgattcg gcagttcggc cgccggtatt
      361 caacgcggcg gcaccggttt tcctcccacc ggccccgcag ctgatgacgg tggacgagtt
      421 agatctcgac agcgatcacg aggacgaggc ttctcccgca gagacaggtg cggacgaggc
      481 cgaaaccgat gccaacaccc ggcggcgtcg gcggcgcggt cgccgcggcc gcggccgtgg
      541 caaggccggc ggagacaccg aggatggcag cgagcaggac gacagcgact cctccgacga
      601 ggtgaccgaa gaccgtgtag ccgaggtgcc tccgggcgaa gagcccggag aaggagttgt
      661 ccgcaggcgc cgccgtcgta ggcgccggcg ggacggcagc gacgacgaca cgctcctcga
      721 tgaggacgac ccaccggaca ccgtggtgca tgtccgggag agcaagctgc agccactggt
      781 cgaggacgag gtgcagtcga tccggggctc cacccggctg gaagcgaaga ggcaacgccg
      841 gcgcgacggg agggaggctg gcaggcgccg ggtggcaatc ctgtccgaat cggagttcct
      901 cgcccggcgt gaggccgtcg agcgcaccat ggtcgtgcgc gagcgtccgg accgtaccca
      961 gatcgccgtg ctcgaggacg acatcctcgt ggagcacttc gtcaccacct cgggctccgg
     1021 gtcgctggtc ggcaacgtct acctcggcag agtgcagaac gtgctgccct cgatggaggc
     1081 agcgttcgtg gacatcggcc ggggccgcaa cgcggtgctc tacgccggcg aggtggactg
     1141 ggatgcggcc ggcctcgagg gcaaggcgcg acgcatcgaa caggctctct ccagcggcga
     1201 ctgcgtactc gtgcaggtca caaaagaccc ggtaggccac aagggcgctc ggttgaccac
     1261 ccagatcagc ttgcccggcc ggttcttggt ttacgtgcca ggtggtcggg ccaccggtat
     1321 cagccgcaag ctgccagata ccgagcgtaa gcgcctcaaa gaggtgctca agcggatcgt
     1381 ccccgacgat gccggcgtga tcatccggac cgcgtccgag ggggtcagcg aggaggaatt
     1441 gagtcgcgac gtccgccggc tgcaggctca atgggaggtt atccggagta agtcagcggt
     1501 ctccgctgat ggttccggtg cttccgggag caaagccaac gcaccggagc tgctctacga
     1561 ggaaccagac ctgctggtca aggtcgttcg ggatctgttt accgaggact tccgggagct
     1621 cgttgtccag ggcgacatcg cctgggacac cgtcgaaggt tatgtcaagc acgtcgcccc
     1681 ggagctgatg cccagagtgc ggaggtatac gggcactggc gacgtgttcg ccgagttccg
     1741 aatcgacgag cagatcatca aggcgctcga tcgcaaggtg tggttgccct ctggcggcta
     1801 tctgatcatc gatcgcactg aggcgatgac cgtgatcgac gtcaacaccg gcaagttcac
     1861 cgggtccggc ggcaacctcg aggagaccgt cacccggaac aacctcgagg ccgccgagga
     1921 gatcatccgg cagctccggc tgcgggacat cggggggatc atcgtcatcg acttcatcga
     1981 catggtgctg gagtcgaatc gcgatctggt actacgccgg ctgaccgaat gccttggccg
     2041 ggaccgtacc cgccaccagg tcgccgaagt cacctctctg gggttggtcc agatgacccg
     2101 gaagaaggtc gggaccgggc tgctggaggc atactccacc acttgtgagc attgcaaggg
     2161 ccggggcgtg ttggtgtccg gggaaccggc ggccgtccgc aaccagtcgg ctccggtgtc
     2221 tgcggggccg ccatctgggg cctcgtcggg cgccaaggag tccggcaccg cgaacggtcg
     2281 ccggtcccgg tcacgtggac gtgggtccgg caacgctacg tcggcacccg aacagacggc
     2341 tagttccacc ccggtcgctg ccgctgtcgc gtcggccgat cttccacagc ccgccacgtc
     2401 gtcagataac gcgcagtcag ataacgctgc gcaggcagat agcgctgcgc aggcagatag
     2461 cgctgcgcag gcagaaccgg tcgtcgcgac acagcaggcg ccgccggccg ccgactcacc
     2521 ggccgccgac tcacctagcg tgccggcgca gcttgcgccg cgcacgatgg ctcgacgccg
     2581 caggacggca tcccggccag cagggccgcc agcgactgag ctgtccgagg gcgtggatcc
     2641 ggccgttcca gttgtccgca gtaacgcacg cggcgtgagc accccggttt gaccgagccg
     2701 gacagcgcgc cgtaccctcg tggtcggccc gccggttcgg cgggccgagg tctgttcgct
     2761 gcgtgtgcag tagcagccga cccagcgcca actgagcaat gtcagccttg attcagtcca
     2821 cgtcagtcga acagccagga gtaccacccg atgtacgcga tcgtgaagac cggcggcaag
     2881 cagtacaaag tcgccgttgg ggacgtcgtc gaggtggaga agctcgttgg cgagcccggc
     2941 accgaggtca gtttgtctgc ggtgctactc gtcgacggcc ctactgtgac ggcgactggt
     3001 ctgagcgcca cttcggtccg cgggaaggtc atcgcgcagg tcaaggggcc caagatccga
     3061 atccataagt tcaagaacaa gactggctac cacaagcgcc agggtcatcg ccagcagctg
     3121 acccgcgttg aggtcaccgg tatcgaccgc tgaccgtttg gccgtgagta actttagcga
     3181 gggtgtgagc accgatggca cacaagaaag gcgcgtccag ctcgaggaat ggtcgcgact
     3241 ccaacgctca gcggctcgga gtgaagcgat tcggcggcca ggcggttaac gccggggaga
     3301 tcctcatccg gcagcgcggc accaaattcc acccgggcgt gcatgtcggt cgtggtcgtg
     3361 acgatacgtt gttcgccctt gagtcgggct cggtgcagtt cagcaccaga cgtgggcgca
     3421 agaccgtcaa cattgtcccg gccgaggtct gagcccggcc ccacacgacg cgccgacgag
     3481 gggcgggacc ggtgaagacc ggcccgcccc tcgtcggcat tgtgggaatc cgatatcgaa
     3541 ttgaggaaag gcagacgtgt cccgctttgt ggatcgggtg gtgattcacg tcgccgcggg
     3601 cgacgggggg cacggttgca cgtcggtgca tcgggaaaag ttcatgccgc taggcggccc
     3661 agacggcggt aatggtgggc gtggtggcga tgtagtccta gtggttgacc caggcgtgca
     3721 cacgttgctc gactttcatt atcgttccca ggtcgttgcc tccagcggca agccgggtca
     3781 gggcagcaac cgaaacggcg ccgtgggtga ggatcgtgaa ctccgggtac cggatggcac
     3841 cgtagtgctc accctcagtg gcgagatgct ggctgacctg atgggggagg gcacccggtt
     3901 cgtcgcggcc gcgggtggca ggggaggcct cggcaacgcg gcgttggcct ccaggacacg
     3961 caaggcaccc ggcttcgcgc tactcggcga gccaggcgag agccgcgagc tggtgctaga
     4021 actgaagtcg gtggccgacg tcgggctcgt cgggttccct tcagcgggca agtcgtccct
     4081 ggtgtccgtc gtttcagcgg cccgtcccaa gatcgccgac tatccgttca ccaccctggt
     4141 tcccaacctc ggcgtagtga ctgcgggaga gacggtgttc accatcgccg acgttccagg
     4201 actgatccct ggcgccagcc agggtaaggg gctggggctg gagttcctgc ggcacatcga
     4261 acgctgcgcc gtgctcgtgc atgtagtcga ttgcgcgaca gtcgcaccag gccgcgaccc
     4321 gctatccgat gtggatgctc tggagcgcga gctcgccgcc tataccccga cgctgggcga
     4381 cgacctcgcg cagcgtcccc ggttggtcgt actcaacaag attgacgttc cggatgcccg
     4441 cgagctggcc gaaatggttc gccccgaact cgaggctcgt gggttgcccg tgcactgcgt
     4501 gtccacggtg accaccgagg ggctgcggga actgcgcttc gcgctcggcg cggccgtgcg
     4561 agctcaccgc gcgtcgctgc ctcccgccga accggcccgg gtggtgctgc gtcccactgc
     4621 tgttgacgag tccgctttcc agatcgtgcc cgatcccgat cggcccgaag ggttcatcgt
     4681 ccagggtgtc cgcccacagc gatgggtgcg gcagacgaat ttcgacaacg ccgaggccgt
     4741 cggttacctg gccgaccggt tggctcgcct cggcgttgag gaggcactcg ccggtgccgg
     4801 tgcccgggcc gggtgcccgg tcaccatcgg tgacgtcacc ttcgactggg aacccaccac
     4861 cccggccgga gcggctgcca tccgcctgag tggacggggc acggactggc ggttggacag
     4921 cgacgagcgc accagcgcgg cgcagcgtaa gtccgcccga gtggccaggc gcgagccgac
     4981 cgccggcgat gaggacgagc agatgtgagt cccacgcggg aagcagtggc acaggcgcgg
     5041 tatctggtgg tcaagatcgg ctcttcgtca ctgaccaccg cagccggtga actggacagg
     5101 gccaggttgg atgccttggt ggacgcgttc gcggcccggg tcgcggccgg aacccagttg
     5161 gtgctggtgt cctcgggcgc catcgctgcc gggttggtgc cgttggggct ccgccgccgg
     5221 ccccgggatc tggccaccca gcaggctgcc gccagcgtag ggcaactggt actagggcat
     5281 gcctacaccg aatcctgggc tcggcatggc cacaccgtcg gccaggtgct gctcaccttc
     5341 gacgacatgg tccgccgcgc gcattaccgc aacgcacagc gcacgttcgc ccggctgcgg
     5401 ggtctaggcg tggtgccggt ggtcaacgag aacgacaccg ttgccaccga cgagatccgg
     5461 ttcggcgaca acgaccggct ggctgcgctg gtcgcgcacc tggttggtgc cgacgccgtg
     5521 gtattgctct ccgacgtcga gggactttat gacagtgatc cccgcctcgg cagagcccac
     5581 ttgatcccgg aggtgagggg accggctgac atgcgtggag tgcagctcgg caccggtggt
     5641 gcgttgggta ccggtgggat ggtatccaag cttgacgccg caacggtggc ctctcaagcc
     5701 ggggtgccgg tgctgctggc cgccgcgacg caggtcaggc gcgccttggg atcggccgac
     5761 gtcggtactg ccttcgcgcc taccggcacg cggctatcgg cccgccggtt ctggttgcgc
     5821 cacgctgcgg gcacagtggg ccggctacaa ctcgacgacg gggcggtgag cgcggtggtt
     5881 caccgtcggc gctcgctgct cgccgcgggc atcaccggcg tcgagggtga gttcgaggcc
     5941 ggtgacgtgg tggagctcat caacccacgt ggcatcgtgg tggcccgggg gatggtcggc
     6001 ttcgacgcgg cggagctcgc cgagctgatc ggccgctcta cccgtgacct ccctccagaa
     6061 ctgcgccgcg aagtcgtcca tgccgacgac ctagtacccg tctaacccca ccccgctcca
     6121 gcgtgttgcc ccctctgccg ggcgtgtcgc gtcgctttgc atgctctgtc ggttacccgt
     6181 gcatacggat agcggagcac gacacaccgg acatcggggc gcgacgctcg ggcaagtagg
     6241 gtggggcatc gtgcaggcgc gagtggattc cggtaccgcg gccgaagtcg ttgcgggatg
     6301 cgcgcgccgg gcgcaacacg ccgcctcggc cttggctacc gcgtccgctg agagcatcga
     6361 cgccgtgctg gaggcgatgg cacaacggct aaagggctgc gccaccgagg tgcttgccgc
     6421 gaacaccgcc gacatcgccg ccgccgagca atcggggatg acccaggcgc tggtcgaccg
     6481 gctgcggctg ggggaggagc ggttgaccga gatggccaac cagctagccc tgcttgccca
     6541 actcccgttc ccgccgcggg accgggtact ggaagaccgg ccggacgggt tacggctgat
     6601 cgaacgccgc cgcccgatcg gcgtggtggg cgccacgttc gaagcccgtc ccaatgtcac
     6661 cgtcgacgtc gcctcgcaac tagtgaaatc ccgcaacgcc ggagtactgc ggaccgggtc
     6721 ggcggctctt cgctcagcgc tggccctcaa tgagcatgtc atcgcgctgg cactcgccga
     6781 cgccgggttg gaccccgacg ccatacaatt ggtgcccgat cctcgccggg acagcgccgt
     6841 tgccctcgtg cagcaacccg agctgatccc actggtcatc gtgcgaggca gcggcgaaac
     6901 cacccgaatg ttggccgccg agggcgcccg ccacggtgtc cgggtgctgg ctcatgccga
     6961 gggcggggga gtgctgtaca tcgacccggc cgccgaccct gcactggccg ttgaactgct
     7021 gatcgccgga ctggaccggc tcggcgtctg taaccgggtc aacctcctcc tggtcgccga
     7081 ccgcaccccg gatggggtgt acgacacact cctcgagacc gcccggcggc ggggaatcga
     7141 gctgtccatg cccccacaca gccacccgct cgggcacgag tgggccctgg acaccggccg
     7201 agaggcgacg ctgtccgtca gcagagtgcg cgggccgcgg cacgccgcac agatcgccaa
     7261 ccaagagacc tccggcctgg ccgccacgat cgtcaccagc gatgagtccg ccgcccgaga
     7321 gtttctggac agctacgccg gcaccggggc attctggaac gccagtaccc gcctgctcga
     7381 cgggttcaag ctacggcggg tacccgagac cggcattaac gtcgaccggg ttcccgggcc
     7441 acgcgggccg gttaccttcg ccgacctcta cctgcgccaa ttcgtcatca tcccggtggg
     7501 ctcgtccttc ggatgagatc gagataaccg gcgatggcga gcgcggccaa cgtccacacc
     7561 agggcctgaa gcatccaggt gatcgcggtg aaggcttgac cggtcgggct ggacgtgtcg
     7621 aaatcgcacc ggttgccgat agccgcaggt gccaggggca gactgcgatc gatacccgcc
     7681 ccgatctgct cgattaggga gcacggcgag ttgggagcga gggcttgact ggtgtgcgtg
     7741 gtgacgtaac ggcccgggcc ggtcagggtg tgcccggcgg ccacccccaa cccggccgca
     7801 gcaaccagta cgagcagtag ggcgaggaca gcgcggctgc tgcgatagcc gtatccggca
     7861 agcgctcccc acagccagtg tgcgatcttg atcagccggc cgccgagttc accgcggtgg
     7921 taacgatccc gctgctgggc gatgaggact ttccgtgcgg tggactcctg cccactggcc
     7981 ttcaacgcgg cgactagttg ctgatagggc tgcggtcgat aatcccgagt gtggtgggtg
     8041 atcaggtgca gccactcttg ccagtccacc gcatgaagcg acgtgtagga caggcccgac
     8101 aacgtgagcc gaggcgccga ggcgcagctc ggtcccgcgg caccaccttg cggacagatc
     8161 acgtgggcgg gcaggaacac atgcttcgct gcggcgtcgt ccaaatcgag gaccggaccg
     8221 gccgggttgg tcagtttcgc gtgactgagg ttgagttgac cgctgatgcc agcatctgcc
     8281 aggcggactg cgccgtcctg gcagtgtccg gtcgcagtga gtccctcggc gaacatgtca
     8341 ctgtcgacct gcaagtgatc acctatcagg gcacggccga cttggttggt cagtctcgcg
     8401 tggctcaggt tgagttgacc gccgatgtgg gcatctgcca ggcggactgc gccgtcctgg
     8461 cagtgtccgg tcgcagtgaa cccctcggcg aacatgtcac tgtcgacccg gaggtggtca
     8521 ccgatgaggg cgggaccggc ggggttggtc agctctgcgc ggtccaggtt cagctgaccg
     8581 ctgatatgag cgtccggtaa ccgtagaacg ctgtcttcgc cgtgtccgct tgcggtaaat
     8641 ccatcgagaa acacgccacc cttgacgtcg aggtgatcgc cgatgagtgc tggcccagca
     8701 gggttgatca gggccgcgcc atccatgttg agttggccgc tgatctgcgc accgggcagc
     8761 cgcaccgcgc cgcgctcata gtgtccggtt gcggtgaacc cctcggcgag caccaacccc
     8821 ccactgacat gtagcccatc ggcgatgagg gcgggcccgg attggttagc caactcggcg
     8881 ccgttgaggt tgagctggcc gacaatgcgc gcacccggca accgcactgc gccgagctcg
     8941 cccgctccgc ttacgatgaa tcctccgccg aagacgtcac cgtcgacgtg gagcccgtcg
     9001 ccgacgaggg caggcccggc ctcattgctc agtctcgcgc cattgaagtt gagctggcct
     9061 ctgatgtggg caccgagtag ccggactgca ccgtagtcgc cccgtccggt ggccgtgaat
     9121 ccgtcaccga gtagcacatc gccatccacc tgcagcccgt caccatcgag agctgacaga
     9181 tgcgagcctg ccagggttaa ccatggcaag cgagcactca ccagaagcac atcatggtcg
     9241 aagaaacagc ctcgcagctc catccccacc gcggccggga cgtgagtgag atccagtgtt
     9301 ccggtgatcc gcgctccatg cagacggaca cccagtgggt caagtcgctc gtcgccgcgg
     9361 cctagcacga gttcccgcag gagctcggca cggacgctgt acctgggatt ctccgtggtc
     9421 gccaactgct caaccgtgag attgctgcac tcgaccacgc agccagatcc caaagcatcg
     9481 atgagtgcga gctctctcga tgaggcctcg ctgagacttc cggtcgtcac gactatcccc
     9541 atcgccggtt gcagaggtcg caggcgcaaa tgatgttgag cccactaggg tccagtttat
     9601 cgccgctgga cccgatcccg aatggttcgc ctaggctgcg cccatgtccg gctgccgact
     9661 cggggtcatg ggcgggacct tcgacccgat ccatcatggc catctcgtcg ccgccagcga
     9721 ggtgcagtct cgtttcgagt tggacgaggt cgtgtttgtg cccacgggga tcccgtggca
     9781 gaagggtgag cgggaggtca gctcagccga agatcgctac ctcatgacgg tcatcgccac
     9841 tgcttccaac ccacggttct ccaccagccg ggtggacatc gaacgccgga ctcccacgtt
     9901 cactgtcgac accctgaccg acctgcgcac ccagtttccc cgtcacgaga tgtttttcat
     9961 cacgggtgct gatgcactgg cgcagatatt gtcctggaag cgggtcgacg agctgttcga
    10021 cctggcccac ctggtaggcg tgacccgccc tgggttccgt ctcgacggca agcacctgcc
    10081 cgaccgggca gtcagcctgg ttgaggtacc cgcgatgacg atctcctcga cggactgccg
    10141 agagcgcgtg gggcgcggcc agccagtctg gtacctggta cccgacgggg tagtgcagta
    10201 catcagcaag cgcggcctgt accgcagtcc acgccattga ccagcatcaa cagtgttgtt
    10261 ggacaccctg ggtacaacac cggtacaact cgacatcact gacccgacct agcggcatag
    10321 cgtgtatttt tctgctttct cgtcgctcct gccgggtgag agcaaggtgg cgtgtgccat
    10381 aggtctgccg atcgagcagc cagaaggatc gaactatgac ctacgagccc cagcgccggt
    10441 accggtcgcc gattgtgggt gatttgcggc tgcctcccga cgatgcggtc gaggaagagg
    10501 cttctcgggt cgaccctgac gagaaggtcc cgatgttgag tgagctcaac gtgcgctacc
    10561 ccggcggcct gcttgccgtc cgtgaggcgt tcttcgcgct gtggagccag tacgcatcgc
    10621 gggcgggcgg ctcgtgacct acggatcagg cggcgggccc cgagcaacgg ttgattccgg
    10681 gtcttgcttt cgttgcgccg aagctttatc agtgtgtgct gtcccgccgg gaccttcgtg
    10741 acctggtgga ggatgatcag cagcgcgccg cgcacaacgg cgtgccaacg acggtgttta
    10801 gggtgtggcc ggattatgag gtcgagccgc agatcgaccg ttccgctgcc accgtgaagg
    10861 ccgacgccgc ctggcgttcc ttcgccgcct gcggcaagaa gatcgtctgg gcggtcatcg
    10921 atagcgggat cgacgccgag catccacact tctgcgagct ggaactcgcc gcggagggcc
    10981 ggggagacaa cctgccgaac ggtttaagca gcggccttca ccgggacttc agctatctgg
    11041 tgaatccggg caacccgctc cagcccgccg cgcctgcggc tgcggtggct gcgggcgcac
    11101 cggggctagc cgttatcccg gacacccgga cggccctggt cgatgacagc gggcacggca
    11161 cccacgtcgc tggcatcatc gcgggctgca cgccaccggg cgcgcagcca cgggttgcgg
    11221 actcgcagga agccaaagac ggcgggttcg tccagcggga gcgcaacagc atgctgtccg
    11281 ggatggctcg ggcgtgtgaa ctggtgagtc tgaaggtcat gcggcgcagc caccaaggaa
    11341 cgtgggtcac gtcgtcggcg gccgtgatcc gggccctgac gtacttgcgt atcgaggtga
    11401 acgtggatcc tgggttgctc cgcgttcacg gggtcaacat gagcctgggg tgcgcgtggc
    11461 ggcctgatca gtatgccgcg gggcagtcgc cgctgtgcca ggctgtgaac caactcgtcg
    11521 gcgcgggtgt cgtcgtcgtt tccgcgggca attacggcgc ccgtagcgcc gccggcgacg
    11581 gggccaacac ctccgccatc atgggctccg tcacggaagc ggctcatgcc caggactgca
    11641 tcgcggtggg atcgacgcat cgggaagccc cgcatgtctt cggtgtcagc tggacttcag
    11701 gcaagggacc gaccctggat ggacggatga agccggatgt cgtggcactc ggggagtgga
    11761 tcgcctcggc tgccaccggc gaggtccgcg cgaaggcggg gttgaaggcg accccggaag
    11821 aagtcgctgc ggccgacccg gtaggcaagc gggacctgtt actgacgtac gcggagctgt
    11881 ccggcacgtc gatggctgcg ccgcacgttt cgggcgtgat cgcggcattt ctgtccgccc
    11941 gccgggagtt catcggccgc ccgcagctgg ttaagagcct gctcaccggc agcgcgactg
    12001 agctgggacg tgagcgctac gcccagggcg cgggcctagc tgacctcatg cgaatactca
    12061 caagcgtttg acgagaaaga gaacagccat gaagcaattg cccaccgggg agccagtgtg
    12121 ggacctgaaa ttcgacgaaa agggaggcat ggacccccgg gaccggcaga ccatcctcga
    12181 cgagatcgat gccgacaacc tggctgactt gttcatcttc agccaccacc acctgacgac
    12241 gatgacgtcg aggactcggg cgaaaccgcg ttactgctga ccgacgaccc gaagacggcc
    12301 taccaggcgg cggaggcgtt cggcagcgcc ccggcgggct cgtcgacaca gggcatcggc
    12361 gactggtgcg ccaacgcgat caacggcgcc aaagaagccg cgcgggtgct gtcctacaac
    12421 gtgacgaaga cccgggccgg tgacatcgga cggtccgggc tgggaacgct gctcgccgag
    12481 ttgcaccgcc gatccccagg cctgcgcgtg cacctcatcg ggcacagctt cggcgctcgc
    12541 ctggtctcct tcgcgctatc cggcgtcggc gagccggcag acagcccgat cgcctccctg
    12601 ctactcctgc agggcgcctt ctcgcactgg tcgttcgcgc acgcgcagga caaccccttc
    12661 ggcaagccgg gtgccctcaa cgcctgggca aaccgggtgc acggaccgct ggtagcgacc
    12721 ttcagcgtgt acgactgggc ggtgtgccgg tggtacccga aggcatcatt cctcgcccaa
    12781 gacgac
//
LOCUS       DASVXZ010000015         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1345547, whole genome shotgun sequence.
ACCESSION   DASVXZ010000015 DASVXZ010000000
VERSION     DASVXZ010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345547"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..809)
                     /locus_tag="VF788_00260"
     CDS             complement(<1..809)
                     /locus_tag="VF788_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932640.1"
                     /translation="MTHSGTATDEVRQAFATGATANLAGAEVPATLLAGLLAGTTRPA
                     GGRVPALRLVGALVRGPLELPGGTVTALVELTGCTFDEGIDLYAAELAGWRMTRCTLT
                     GVQAANLRVRSELALENCTVHGPIVLPDARIEGPLRLSDTRLDVPARHALVGVRMVVR
                     GVLDARRLRAEGEVQLSGARVDGNIDFRGAWLARPGGDALEASGVQVGGNLRCDRGLH
                     SQGRVVLAGASVAGNAVFSGATLRGTTDPDEPAVLVLPRGSADPSAALVADR"
     gene            859..>1869
                     /locus_tag="VF788_00265"
     CDS             859..>1869
                     /locus_tag="VF788_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012796525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8932641.1"
                     /translation="MSTRAEAATDQAGHPQRWRALAVTQLAGFMSLLDVSIVNVALPS
                     IQQSLGASMAQVQWVVSGYALTFGLVLVAGGRLGDALGRRRMFLAALTGFIVTSALCG
                     AAPNAELLVAARLLQGLTAGMLTPQNSGLIQVLFQGAERGRAFGIFGATVGLSTAVGP
                     VLGGLILAAAGEQEGWRWIFYVNVPIGLIALVAAWRLVPSRPRRGGPVTSEIDVVGAL
                     LLGSGVLCLLLPLVLIEDGGLRRLWWLFALAPVLIALFLRWEQRMVRRERPPLLDTRL
                     LSSTPGYAAGAAVGLLYFVGFSGIWLVFALYFQRGLGYTPLQSGLAVTPFALGSAVSA
                     AVA"
BASE COUNT          258 a          648 c          653 g          310 t
ORIGIN      
        1 cggtcagcca ccagggccgc actgggatca gcgctgccac ggggcagcac gagaaccgca
       61 ggctcgtccg gatcggtggt gccccgcaac gtcgcgccgg agaacaccgc gttccccgcg
      121 accgaggcac cggccagcac cacccgccct tggctgtgca agccccgatc acagcgcagg
      181 ttgccaccca cctgcacgcc tgaggcctcc agcgcgtcgc caccgggacg ggccagccac
      241 gcgccgcgga agtcgatgtt gccgtccacc cgggcgccgg atagctgtac ctcaccctca
      301 gcgcgcagcc gccgagcgtc gagcacgccc cggaccacca tccgcacccc gaccagagcg
      361 tgacgagcgg ggacgtccag acgagtatcg ctcagccgca gcggtccctc gatccgggca
      421 tcgggcagca cgatcggccc gtgcacggtg cagttctcca atgccagctc gctgcgcacc
      481 cggaggttag ccgcctgcac accggtcagc gtgcaccggg tcatgcgcca accggccagc
      541 tcagcggcgt acaggtcgat gccctcatcg aaggtgcagc cggtcaactc gaccagcgcg
      601 gtgaccgtcc ccccgggcag ctccaacggg cctcggacga gcgcgccgac caaccgcagt
      661 gcgggaaccc gacccccggc gggccgtgtt gtcccggcga gcagcccggc aagcagcgtg
      721 gcaggcactt cggccccggc aaggttcgcc gtcgcgccgg tggcgaatgc ctggcgtacc
      781 tcatcggttg cagtaccgct atgggtcacc ggcacctctc acgccgcgga tcctacggcg
      841 gccccgcaag ataaggcgat gagcactcga gcggaagccg ccacggacca ggctggtcac
      901 ccgcagcgtt ggcgagctct tgcggtcacc caactcgcgg gtttcatgag cctcctcgac
      961 gtcagcatcg tcaatgttgc gctgccctcc atccagcaga gcctgggcgc ctcgatggcg
     1021 caggtccagt gggtggtttc gggttacgca ctcaccttcg ggctggtgct ggtggcaggt
     1081 ggccggctgg gagatgccct gggccgccgg cggatgttcc ttgccgccct aaccgggttc
     1141 atcgtgacca gcgcgctgtg cggagcggcg ccgaacgcgg agctgttggt cgcggcccgg
     1201 ctgttgcaag gtctcaccgc ggggatgctc accccgcaga actcgggtct gatccaggtg
     1261 ctgttccagg gagcggagcg gggccgggcg tttggcatct tcggcgcgac agttggattg
     1321 tccacagcgg tcggtccggt gctcggcggt ctcatcctcg ccgcagccgg cgagcaggaa
     1381 ggctggcggt ggatcttcta cgtcaacgtt ccgatcgggc tgatcgcgct ggtcgcggcg
     1441 tggcgcctgg tgccctcccg gccgcgccgc ggggggccgg tgacatcaga gatcgatgtg
     1501 gtgggtgcgc tgctgctggg ttccggtgtg ctgtgcctgc tgctgccgct ggtgctgatc
     1561 gaggacggtg ggttgcgccg gttgtggtgg ctctttgcgc tggcgccggt gctgattgca
     1621 ctatttttac gctgggagca gcggatggtg cggcgtgagc ggccaccgtt gctggacacc
     1681 cggctgctgt ccagcacccc cggctacgcg gcgggcgctg ctgtcggact tctgtacttc
     1741 gtcggcttca gcgggatctg gttggtattc gcgctgtact tccagcgcgg cctgggatac
     1801 acgccgctgc aatccgggct cgcggtgaca ccgtttgcgc tcggatcggc ggtgtcagcc
     1861 gcggtagcc
//
LOCUS       DASVXZ010000016         3332 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_181280, whole genome shotgun sequence.
ACCESSION   DASVXZ010000016 DASVXZ010000000
VERSION     DASVXZ010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181280"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VF788_00270"
     CDS             <1..344
                     /locus_tag="VF788_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932642.1"
                     /translation="ARAEAEELLSVATADAEELEEAARTAAERLVAHARSEAERLVAA
                     ATETAQQRERSSAHELHQLSRLQEEINADLYRVKDLLDSLFGAGGAVTGVIRHRLRKD
                     GAPAAQPVRTV"
     gene            602..1774
                     /gene="pdhA"
                     /locus_tag="VF788_00275"
     CDS             602..1774
                     /gene="pdhA"
                     /locus_tag="VF788_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HEX8932643.1"
                     /translation="MEIDGQHTPQQVIAGLRATGEGEDLIQLLTPEGQRVSHPQFDLE
                     ISPAEIRELYRDMVLVRRADREANALQRQGQLGLWAPLLGQEAAQIGAGRALAPQDMA
                     FPSYREHGVAWCRGVDPTELFGIFRGIDQGSWDPIATGFGLYAIVVGSQCLHATGYAM
                     GQRLDGKIGNAETGEATLCFFGDGASSQGDVHEGFVWAAVYDAPVVFFCQNNQWAISA
                     PLDRQSRVPLYQRARGYGFPGVRVDGNDVLATLAVTRWALRECRTGNGPVLIEACTYR
                     MDAHTTSDDPTRYRLADELEEWKLKDPLERVRVHLVREGLAEPEFFNEVATEAEELAV
                     RLRNYCTSMPAPGPERIFSKIYAEPSPSLDSARADFLAYHASFADGELGSEPGSEY"
     gene            1774..2766
                     /locus_tag="VF788_00280"
     CDS             1774..2766
                     /locus_tag="VF788_00280"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEX8932644.1"
                     /translation="MATTSEPQTITLAKGINQGLRAAMEADPKVIVMGEDVGRLGGVF
                     RITDGLQKDFGEQRVLDTPLGESGIIGTAVGLAVRGYRPVCEIQFDGFVFPAFDQIVT
                     QLARLHYRSQGKLRMPVVVRIPHGGGIGAVEHHSESPESYFAHTPGLRVVACSNPVDA
                     YWMIQQAIACDDPVIFFEPKRRYWEKAPLELSVAPPPLFRSRLLRSGGTATVVAYGPT
                     VRTVLDAATVAERDGQQLEVIDLRTLSPLDLAPVFDSVRRTGRLICVSEAPGAASLIA
                     EVAAQVSQECFYSLEAPVLRVTGFDTPYPPAKCEEDYLPDLDRVLDALDRVLAY"
     gene            2772..>3332
                     /locus_tag="VF788_00285"
     CDS             2772..>3332
                     /locus_tag="VF788_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX8932645.1"
                     /translation="MMARIFALPDVGEGLTEAEVLRWHVAPGDTVALNQIIVEIETAK
                     AAVELPSPFAGVVAELFAEPGTTLAVGTPLIAIDTSDCAPAPAPAGTIGEEGPGGRIT
                     TLVGYGPKTATVTRRARKASLPAPAAAHGSVPLAKPPVRKLAKELGIDLGTVLGSGIG
                     GVITREDVRRAVEPASNGTARIDTVSG"
BASE COUNT          539 a         1102 c         1147 g          544 t
ORIGIN      
        1 cagcccgcgc ggaagccgag gagttgctca gcgtagccac tgcggacgca gaggagctgg
       61 aagaggcggc tcgcaccgcg gccgagcggc tcgtcgcgca tgcccgatcc gaggccgagc
      121 ggctggtcgc cgccgccacc gagaccgcgc agcagcggga gcgctccagc gcccatgaac
      181 tgcaccaatt gtcccggttg caggaagaga tcaacgcgga cctttaccgg gtgaaggacc
      241 tgctggacag cttgttcggg gcgggcggcg ctgttaccgg cgtgatcagg cataggctac
      301 gcaaagatgg cgcgccggcc gcacaaccgg tccggaccgt gtgacgattg cccatacccg
      361 tgcgaggatg cgggtggagt gaattgtcag cgtcgtgctt ctggtagtgc gatccacctc
      421 cgggagccac gctgcgctgc ggcgtcgccc cgtgcccatc acgagtggag cgaggtgtaa
      481 cagcaaggag atgcacatgc attcccgtag acgcgcacca tcccactccg cacctgctga
      541 caattccgtc ggaagcccga tagtcggggg ccccgtcgtg aggcccgtta tcggtgctgc
      601 gatggagatc gatggtcagc acactccgca gcaggtgatc gccgggctgc gggcaacggg
      661 tgaaggtgag gacctgatcc agctgctgac cccggagggg cagcgggtgt cgcatccaca
      721 gttcgacctg gagatctcgc ctgcggaaat ccgagagctg tatcgcgaca tggtgctcgt
      781 gcgccgagcc gatcgggagg ccaatgccct acagaggcag ggccagctcg gtctctgggc
      841 accgctgctg ggccaggaag ccgcgcagat cggtgccggc cgggcgctgg ccccccagga
      901 catggccttc ccgtcctacc gggaacacgg cgtcgcgtgg tgccgagggg tcgatcccac
      961 cgagctgttc ggcatcttcc gcggcatcga tcagggctca tgggatccga tcgccaccgg
     1021 gttcgggctc tacgccatcg tcgtgggtag ccagtgcctg catgccaccg gctacgcgat
     1081 gggtcagcgg ctggacggca agatcggcaa cgcggagacc ggtgaggcca ccctctgctt
     1141 cttcggcgac ggcgccagct cccagggtga cgtccacgag ggtttcgtct gggccgctgt
     1201 ctacgacgca ccggtggtgt tcttctgcca gaacaaccag tgggcaatct cggcaccgct
     1261 ggaccgtcag agccgggtgc cgctgtacca gcgggcgcgc ggttacggct ttcccggggt
     1321 ccgagtggac ggtaacgacg tgctggccac cctggccgtc acccgttggg cgttgcggga
     1381 gtgccgcacc ggcaacggcc cggtgctgat cgaggcgtgc acctaccgga tggacgcaca
     1441 caccacctct gacgacccga cccggtaccg gctcgctgac gaactcgagg aatggaagct
     1501 caaggatccc ctggagcggg tccgggtgca cctggtgcgg gaagggctgg ctgagccgga
     1561 gttcttcaac gaggtggcca ccgaggccga ggagctggcg gtgcggctgc gcaactactg
     1621 tacttcgatg cccgccccag gcccggagcg aatcttttcc aagatctacg ctgaaccgtc
     1681 accgtcgctc gactcagccc gcgcggactt cctggcttac cacgcgtcct tcgccgacgg
     1741 tgagctcggt agcgagcccg gaagtgaata ctgatggcca ccactagcga accacagacg
     1801 atcaccctgg ccaagggcat caaccagggt ctgcgagctg cgatggaggc cgaccccaag
     1861 gtcatcgtga tgggtgagga cgtcgggcgg ctcggcgggg tattccggat caccgatggc
     1921 ctgcagaagg acttcggcga gcagcgggtg ctggacaccc ccctgggcga gtccgggatt
     1981 atcggcaccg ccgtcgggct cgcggtccgc ggctaccgcc cggtctgcga gatccagttc
     2041 gacgggttcg tctttcccgc attcgaccag atcgtcaccc agctcgccag actgcactat
     2101 cgctcgcagg gcaaactgcg gatgcctgtg gtggtgcgca ttccgcacgg cggcggaatt
     2161 ggcgccgtcg agcatcactc cgagtccccg gagtcctact ttgcacacac cccggggctc
     2221 agggtcgtgg cgtgctccaa ccccgtggac gcttactgga tgatccaaca ggctatcgcc
     2281 tgcgacgatc cggtgatctt cttcgagccc aagcggcggt actgggagaa ggcacctctg
     2341 gagctctcgg tggcgccccc gccgctgttc cgctcgcggc tgctgcgctc cggtgggacc
     2401 gcgaccgtgg tcgcctacgg gccgacggtg cgcaccgtgc tggacgccgc gaccgtcgcc
     2461 gaacgcgacg gccagcagct ggaggtgatc gatctgcgca cgttgtcccc gctggatctc
     2521 gctccggtgt tcgactcggt gcggcgcacc gggcggttga tctgcgtatc ggaggcacct
     2581 ggtgcagcct cgctgatcgc cgaggttgcg gcccaggtct cgcaggagtg cttctactcg
     2641 ctggaggccc cggtgctgcg agtgaccggg ttcgacaccc cgtatccccc cgccaagtgc
     2701 gaggaggact acttgcccga cctggatcgc gtgctcgacg ccctcgaccg cgtgctggcg
     2761 tactgaggcg gatgatggcc cgcatcttcg cgttgcccga cgtcggggaa ggactcaccg
     2821 aggcagaggt cctgcgctgg cacgtcgcgc ctggtgacac ggtcgcgctc aatcagatca
     2881 tcgtggagat cgagacggcc aaggcggccg tcgagctgcc cagccccttc gccggagtgg
     2941 ttgccgagct gttcgccgaa ccgggcacca cgttggccgt gggcaccccg ctgatcgcca
     3001 tcgacaccag tgattgcgca ccggcgcctg ctccggcggg cacgatcggc gaggagggac
     3061 ctggcgggcg gatcacgact ctggttggtt acggcccgaa gaccgcgaca gtaacccgcc
     3121 gggcacgcaa ggccagtttg cctgctcccg ccgccgctca cggatcggtt ccactggcca
     3181 agccaccggt acgcaagctg gccaaggaac tggggatcga cctgggaacg gtgctcggct
     3241 cgggcatcgg tggggtgatc acccgggagg acgtacgtcg cgccgtggaa cctgccagca
     3301 atggcactgc ccgcattgac accgtgtccg gc
//
LOCUS       DASVXZ010000017         5889 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_897412, whole genome shotgun sequence.
ACCESSION   DASVXZ010000017 DASVXZ010000000
VERSION     DASVXZ010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5889
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_897412"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VF788_00290"
     CDS             <1..338
                     /locus_tag="VF788_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8932646.1"
                     /translation="TTPDGRPISPSTLDKQWRDLRERVGLGTLRFHDLRHTCVSLLLA
                     LGVAPHIVREIAGHSDIKVTMTVYTHGNLDEHAAALARLGSVIGETLPSTVAVNDSIE
                     EEQDRGNVG"
     gene            complement(343..427)
                     /locus_tag="VF788_00295"
     tRNA            complement(343..427)
                     /locus_tag="VF788_00295"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(391..393),aa:Ser,seq:tga)
     gene            complement(484..1518)
                     /locus_tag="VF788_00300"
     CDS             complement(484..1518)
                     /locus_tag="VF788_00300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932647.1"
                     /translation="MTDPVAGFAANEVSIGDAPTQEPARGPVRGAARGLEGSADGPAL
                     GPERVPSGQGVVPAPPRLRVPGQVSGLAPDTAMQKIVLPGLVELTLGNVVVPGRFDPH
                     RIAGFVTRLEDVPASSSSELIRRYGLNQVADWPVSDVLHVLRFYAHSPQLYIAPFESS
                     VYQVDLIELPAGTELWRIDSQGDEQRVGAYLNRYVGWVGTGPATLGPASWNRPPVALR
                     PTVRRGLVAQYHGGDFDADFGPRPGEVTLYPLPGKQSPEELAGYPLVVTLGDLDSLDL
                     VRWCGGWNGLPVELVDSGPKHAAIHYIGENGPRAADLGLAEVDYRVWRGFVPRAELTD
                     VQEQCLALVP"
     gene            complement(1644..2114)
                     /locus_tag="VF788_00305"
     CDS             complement(1644..2114)
                     /locus_tag="VF788_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8932648.1"
                     /translation="MTGGGDQPRWLDSEEMRAWRAFVVGKALLDAQLNRELQDEHQLT
                     LADYELLVRLSEASCGQVRMSTLAEQVGSSKSRISHQIGRMEKAGLARRQECPGDRRG
                     VFAVLTDHGLEVLRSAAPTHLRGVRDNLIDLLSGQERLVLADIFERVQSHLRER"
     gene            complement(2201..2860)
                     /locus_tag="VF788_00310"
     CDS             complement(2201..2860)
                     /locus_tag="VF788_00310"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX8932649.1"
                     /translation="MVEPPPDPWPLRHLVLRTPRLTLRPSDDEGLYELAELALHGIHP
                     PEEMPFLQPWTDQLPDELVRGVAQHQWAARSRLRPNEWSVGFLARCDGQVIGVQDLSA
                     RDFAITREVSTGSWLGSAYQGRGFGTEMRAAVLLLAFDHLGATTARSGAYVDNPASLR
                     VSEKLGYCRDGTGTFARRGKAATQIRLLLEASQLLRPEWTLEVDCLDGCRELLGAAGC
                     T"
     gene            2902..3876
                     /locus_tag="VF788_00315"
     CDS             2902..3876
                     /locus_tag="VF788_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HEX8932650.1"
                     /translation="MRAITITEYGGPEVLTLTEQPDPQPGPGEVLIDVAATSVNRADL
                     LQRQGRYLTPPGASEIPGLECAGTVAKLGDGVIGFAVGDQVCALLAGGGYAEQVAAPA
                     GQVMPLPPGIDVVTAGGVPEVACTVWSTVVRHAGLGAGELLLVHGGSGGIGTHAIQVG
                     RALGAQVATTASAARLPRCAELGAQILIDYREQDFAEELTGRADVILDNMGASYLARN
                     VRALAPDGRLVVIGLQGGTTAELNLAALLPKRASVAAIGLRGRPVEGLHGKAALCADV
                     VAGLWPMFGDGRVKPVVQVTLPLAQAAQAHRMLEAGGVVGKVLLTTGG"
     gene            3959..4495
                     /locus_tag="VF788_00320"
     CDS             3959..4495
                     /locus_tag="VF788_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial proteasome activator family protein"
                     /protein_id="HEX8932651.1"
                     /translation="MSQPQEQQVIVVGPDGQPVATGTLDERGGQEVSDMVEQPAKVMR
                     IGSMIKQLLEEVRAAPLDDASRNRLREIHASSIRELEQGLAPELREELERLSLPFSED
                     VTPSDAELRIAQAQLVGWLEGLFHGIQTALFAQQMAARVQLDQMRRGLPAGMMPPGMQ
                     PPGGQPAEPGARGTGQYL"
     gene            4768..5628
                     /locus_tag="VF788_00325"
     CDS             4768..5628
                     /locus_tag="VF788_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019811520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932652.1"
                     /translation="MQDTATAPEISRAPGFPSRSWGRAVGDLRAGWQQRRLWGHLGWQ
                     DIKQGYRRSVIGPIWITISLAIQALGMGILYAALFNQELHYFLPYLAVGLIIWQFMAA
                     CVNEGAEVFIRNEGLIKHLPAPLSVHVFRLVWRQLLFFGHNALVWLVLILIFPRSLGW
                     SSLLALPALAVIVLNGTWVAILIGVIATRFRDVPPVTGSIVTLMFFMTPIVWDYDQLR
                     RAGGAVSERARLAELNPFLHFVEILRRPMIGESFELRHWVVALAITVVGWVAALVVLR
                     NYRARVSYWV"
     gene            5636..>5889
                     /locus_tag="VF788_00330"
     CDS             5636..>5889
                     /locus_tag="VF788_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8932653.1"
                     /translation="MVSIDVNGACVDFPIFDAKTRSLKKALLGTMGRAGGKIGIDSKV
                     PIIEALRNITLSLRNGDRVGLIGHNGAGKSTLLRLLSGIY"
BASE COUNT          980 a         1996 c         1971 g          942 t
ORIGIN      
        1 tcactacccc ggatggccgg ccgatctcac cgtccaccct ggacaagcag tggcgagacc
       61 tgcgcgagcg ggtcggtctt ggaacgctgc gctttcacga cctccgccac acgtgcgtgt
      121 cgcttctgct agcactcgga gtggcaccac acatcgtgcg ggagatcgcg ggccactccg
      181 acatcaaagt caccatgacc gtctacaccc acggcaacct cgacgagcac gccgccgcgc
      241 tcgcccggct gggctccgtc ataggcgaga cgttgccgtc aaccgttgcc gtcaacgaca
      301 gcatcgagga ggagcaagat cgtggaaacg tgggctgagc tgcggaagcg gagggattcg
      361 aacccccggt gcctctcggc acgctcgctt tcaaggcgag tgcattagac cgctctgcca
      421 cgcttccgat cgtgcacgct agcgtgtccc gcggatcgtc gcgtctgcga ccggccgagc
      481 cggtcagggg acgagcgcta ggcactgctc ctgcacatcg gttagctcgg cgcggggcac
      541 gaatccacgc cagacccggt agtcgacctc cgcgagaccg aggtcagcgg cccgcgggcc
      601 gttctccccg atgtaatgga tcgcggcgtg ctttggaccg gagtccacca gttcgaccgg
      661 caagccgttc cacccgccgc accagcgcac caggtcaaga gagtcgaggt cacccaacgt
      721 caccacgagc gggtatccgg cgagctcttc cggcgattgc ttgccgggca gtgggtacag
      781 agtcacctcg ccgggacgcg gaccgaagtc ggcatcgaaa tctccaccgt gatactgcgc
      841 gaccagaccg cggcggacag taggccgtag cgctaccggt ggccgattcc aggacgccgg
      901 acccagcgtt gccggaccgg tgccgaccca cccgacgtaa cggttcaggt aggcgcccac
      961 gcgctgctca tcaccctgcg agtcgatccg ccacagctcg gtgccggctg ggagctcgat
     1021 cagatccacc tggtagacac tgctctcgaa cggcgcgata tagagctgcg ggctgtgcgc
     1081 gtagaagcgc aacacatgca gcacgtcgct gaccggccag tcggctacct ggttcaaccc
     1141 gtagcgacgg ataagctctg atgacgagct cgccggcacg tcttccagcc gcgtcacgaa
     1201 accggcgatg cggtgcgggt caaagcgccc tggcaccacc acgttaccca gcgtcagctc
     1261 taccagtccg ggcagtacga tcttctgcat cgcggtgtcc ggcgcgagcc cggacacctg
     1321 tccaggcacc ctcagtcgcg ggggcgccgg cactacacct tgcccggagg gcactcgctc
     1381 cggacccagc gccgggccgt ctgcggagcc ttcgagaccc cgagcagcgc ccctcaccgg
     1441 tcccctcgct ggttcctggg ttggggcgtc gccgattgac acctcgttgg ccgcgaaccc
     1501 tgctaccgga tctgtcatga gttccaccag tccccgccgt gaggcccgtc cgaaactgaa
     1561 gtcgggctgg gttccgggaa cctactacgc cattcggtcc aaggcggccg ggagggggtt
     1621 ggccaccgcc gcgagagggt ggtctaccgc tcccgtaggt ggctctgcac ccgctcgaag
     1681 atgtcggcca gcacaagtcg ttcctggcca gacagcaaat cgatcaggtt gtcacggact
     1741 ccgcgcaggt gcgtgggagc ggcgctgcgc agcacctcca ggccgtgatc ggtcagcaca
     1801 gcgaacactc cgcgccggtc acccgggcat tcctgtcggc gcgccagccc ggccttctcc
     1861 atccggccga tctggtgaga gatccggctc ttggacgatc ccacctgctc agccaaggtg
     1921 ctcatccgga cctgcccaca tgacgcctcg gacagccgga ccagcagctc gtagtcggcc
     1981 agggtcagct ggtgctcgtc ctgcaattcg cggttcagct gcgcgtcgag cagcgctttg
     2041 ccgaccacaa aagcgcgcca ggcacgcatc tcctcggaat cgagccagcg tggctggtcg
     2101 cctcccccgg tcacccatgc aggctaaccg accacgtcag cgtacgacgc tacgccagcc
     2161 gcaggacgga agtctcgatg acggcgagcg tagaagagcg tcacgtgcaa cccgccgcgc
     2221 ctagcagctc gcggcagcca tccaggcagt ccacctcgag tgtccactct ggacggagga
     2281 gctgcgacgc ttcgagtagc aaacggatct gcgtcgctgc cttgcccctc cgggcaaagg
     2341 tgccggtgcc atccctgcaa taacccagct tctcactcac ccgcagcgac gccggattgt
     2401 cgacatacgc cccggagcgt gcggtggtgg caccgaggtg gtcgaaggcc agcaacagca
     2461 ccgcggcccg catctccgtg ccaaacccgc gaccttgata tgcggagccc aaccacgagc
     2521 ccgtcgacac ctcccgggtg atcgcgaaat ctctcgccga gaggtcctgg accccgatga
     2581 cctggccatc gcaccgggcc aggaaaccga cgctccactc gttcggccgc agccgcgagc
     2641 gcgcagccca ctgatgctgc gcgacgccgc gcaccagctc atcgggaagt tggtcggtcc
     2701 agggctgcag gaacggcatc tcctcgggcg ggtggatgcc gtgcaacgcc agctccgcca
     2761 gctcgtacag accctcatcg tcgctcgggc gcagcgtgag acgcggggtg cgtagcacca
     2821 gatgccgcaa cggccatggg tccggaggtg gctcaaccat ggctgcaacg gtgccacggg
     2881 cgcagcgact accgtcggca catgcgcgcg atcacgatca ctgagtacgg cggcccggaa
     2941 gtgttgaccc tgacggagca gcccgacccg caacccgggc ccggcgaggt gctgatcgac
     3001 gtcgccgcga cctcagtcaa ccgggccgac ctgttgcagc ggcagggccg gtatctcaca
     3061 ccacccgggg ccagcgagat ccccgggctc gagtgtgccg gcacggtggc caagctcggc
     3121 gacggagtga tcggattcgc ggtgggtgat caagtatgtg cgctgctggc cggcgggggg
     3181 tacgccgagc aggtcgcggc acccgccggg caggtgatgc cgctgccgcc cggcatcgat
     3241 gtggtcaccg ccggcggggt gcccgaggtg gcctgcaccg tgtggtcgac ggtggtccgt
     3301 cacgccgggc tgggcgccgg ggaactgctg ctggtgcacg gcgggtccgg cggcatcggc
     3361 acgcacgcga tccaggtcgg ccgggcgttg ggcgcacagg ttgcgacgac ggcgtcggct
     3421 gcgcggttgc ctcgctgcgc ggagttgggc gcgcagatct tgatcgacta ccgcgagcag
     3481 gactttgccg aggagctcac cggccgcgcc gacgtcattc tcgacaacat gggcgccagc
     3541 tacctggccc gcaatgtccg ggcgctagcc ccggacgggc ggctggtggt gatcggcttg
     3601 cagggtggca ccaccgcgga gctgaacctc gcggccttgc tgcccaagcg ggccagcgtg
     3661 gcggcaatcg ggctgcgcgg gcgcccggtg gagggcctgc acggaaaagc tgccctgtgc
     3721 gcagacgtcg tcgccgggtt gtggccgatg ttcggcgacg gtcgggtcaa gcccgtggtg
     3781 caggtgacgc tgccgctggc gcaggccgcg caggcgcacc ggatgctcga ggccggcggc
     3841 gtcgttggca aggtgctgct caccaccggc ggctgaggga gtcccgttcg tgcaccgcga
     3901 agcgacacac cgggcaggcg ggcgcgacac acgggggtgg ggggcgcaag atggagtcat
     3961 gagtcaacct caggagcagc aggtcatcgt cgtcgggccg gacggtcagc cggtcgctac
     4021 cggcactctt gacgagcgcg gtgggcagga agtctccgac atggtcgagc agccggccaa
     4081 ggtgatgcgg atcggtagca tgatcaagca gctgctggaa gaggtgcgcg ctgcaccgct
     4141 ggatgacgcc agccgcaacc ggctgcggga gatccacgcc tcctcgatcc gcgagctcga
     4201 acaaggcctc gccccagaac tccgcgagga gctcgagcgg ctgtccctgc cgttcagcga
     4261 ggacgtcacc ccgagcgacg ccgaactgcg aatcgcgcag gcccagctgg tcggctggct
     4321 ggaaggcctg ttccacggca tccagaccgc cctgttcgcg caacagatgg ccgcccgggt
     4381 gcaactggac cagatgcggc gcggcctccc cgcggggatg atgccgcccg gaatgcaacc
     4441 tcccggtggg caaccagcag agcccggagc ccgcggcacc ggccagtacc tctaatcgtg
     4501 ctattccgcc agcgtcgcac cgcttgctga cgcaagacca ccatgaggaa ctagtcaccc
     4561 ccggcgcacg actatggtgg gggtcggccc gctttgtact gtggcgactc gagtggacac
     4621 agcgttgctc gtcgacggtc atcgcgactc agccggtatc cgcagatctt cagctttgtg
     4681 atcaaccgtc ggcctcggca gccggatctc aggcgatggg tgtgtgcggc cagaggcgtg
     4741 gctgccattc gagtaccctc acggatcgtg caggacaccg cgacggcgcc cgagatcagc
     4801 cgggctccgg ggttcccatc ccggagctgg ggtcgcgcgg tcggtgatct acgggctgga
     4861 tggcagcagc gccggttgtg gggtcacctg ggctggcagg acatcaagca gggctaccgg
     4921 cgctcggtga tcggaccgat ctggatcacg atcagcctgg ccatccaggc gctgggaatg
     4981 gggatcctct acgcggcgct gttcaatcag gaactgcact atttcctgcc ctacctggcc
     5041 gttggcctga tcatctggca gttcatggcg gcctgcgtca acgagggcgc ggaagttttc
     5101 atccgcaacg agggactgat caagcatcta cccgcgccgc tgagcgtgca cgtgttccgg
     5161 ttggtctggc ggcaactgct gttcttcggg cacaacgcgc tggtctggct cgtcctgatc
     5221 ctgatcttcc ctcgatcact cggctggagc agcctgctgg cgctgccggc gctggctgtg
     5281 atcgtgctca acggaacctg ggtggcgatc ctgatcggcg tcatcgccac ccgattccgg
     5341 gatgtccccc cggtgaccgg cagcatcgtc accctgatgt tcttcatgac gccgatcgtg
     5401 tgggactacg accagctgcg acgagccggc ggcgccgtct ctgagcgcgc caggctggct
     5461 gagctcaacc cgttcctgca cttcgtcgag atcttacggc ggccgatgat cggtgagtcc
     5521 ttcgaactcc ggcactgggt ggtggccctg gccatcactg tggtggggtg ggtagcagcg
     5581 ctggtggtcc tgcgcaacta ccgggcccga gtctcctact gggtgtgata acacaatggt
     5641 ctccatcgac gtgaacggtg cctgcgtcga ctttccgatc ttcgacgcga aaaccagatc
     5701 gctgaagaag gctctgctgg gcacgatggg gcgagccggt ggcaagatcg ggatcgactc
     5761 caaggtgccg atcatcgaag cactccgcaa catcaccctg tcgttgcgca acggcgaccg
     5821 ggtcggcctg atcgggcata acggggcggg caagtccacc ctgctgcggc tgctgtccgg
     5881 gatctacga
//
LOCUS       DASVXZ010000018         2845 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1167455, whole genome shotgun sequence.
ACCESSION   DASVXZ010000018 DASVXZ010000000
VERSION     DASVXZ010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1167455"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1632)
                     /locus_tag="VF788_00335"
     CDS             complement(<1..1632)
                     /locus_tag="VF788_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8932654.1"
                     /translation="MTVPTRPTGEAGDPMAEVHQDAADIASSMRSLFGFDSTMAELDP
                     AGLGQALGKLAMSVAGNPAALSRSAMEYGMRSAQAAVTAALRSIGLDQQGPVQPEADR
                     RFSDPAWTSNPLFYLVRQQYALWEDFLQDLLVEAKLDDATRQKAEFALRQVLDAAAPT
                     NWLLTNPVALKKAFDTAGLSLVRGASNALRDLATNKGMPRQVTPGQFRPGHELAATPG
                     SVVFRNRLIELIQYQPQTETVYAVPLLFSPPWINKYYIMDLAPGKSLVEWAVQHGHTC
                     FMISYRNPDDALGELSMSDYLREGLLAALEVVEEITGAPQTNVAGLCLGGTMAAALAA
                     WLTAREEQDRVASLTVMNTLLDFTLPGQLGVFTDETAIQRLEGTMARKGYLPADNMAT
                     TFNLLRARDLVWNYVVNNWLLGEDPAPFDMLSWNADSTRMPAAMQTEYLRSLYLENRL
                     AKGELKLAGELLDLSRISQDSYFISAEKDHIALWKAVYAGAKLMGGTIRFMLSNSGHI
                     AGVVNPPNPKSKHWVGSAETLPDDPEAWRAKAKEVA"
     gene            1755..2180
                     /gene="dtd"
                     /locus_tag="VF788_00340"
     CDS             1755..2180
                     /gene="dtd"
                     /locus_tag="VF788_00340"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEX8932655.1"
                     /translation="MRAVVSRVTEAAVLVNGHVVGELDRPGLLVLLGVTHDDGSAQAE
                     LMARKLHELRVLRDERSVAETGAGVLVVSQFTLYGSTRKGRRPSFTSAARPEHAEPLI
                     DEVVTRLRACGVTVATGRFGATMAVRSVADGPFTILLDV"
     gene            2444..>2845
                     /locus_tag="VF788_00345"
     CDS             2444..>2845
                     /locus_tag="VF788_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 factor domain-containing protein"
                     /protein_id="HEX8932656.1"
                     /translation="MTAAQITQEAETVLEADLDAQSPAADLVRVYLNGIGRTALLSAQ
                     QEVDLAKRIEAGVFARHILDTAPRLSPNRRADLTRLVWDGHRAKDHLLEANLRLVVSL
                     AKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT"
BASE COUNT          510 a          910 c          911 g          514 t
ORIGIN      
        1 ggcgacctcc ttagccttcg cgcgccatgc ctctggatcg tcgggcaacg tttccgcaga
       61 accgacccag tgcttggact ttggatttgg cgggttcacc acgcctgcga tatgtccgga
      121 gttggataac atgaaccgta tggtgccccc catgagcttg gcacccgcat ataccgcctt
      181 ccacaacgca atgtggtctt tctcagcgga aatgaaataa ctgtcctggc tgattcgaga
      241 caggtccagc agttccccgg caagttttag ctcacctttg gccagccgat tctccagata
      301 caaggaccgc aggtactcgg tctgcatggc tgcaggcatc cgggtggagt cggcgttcca
      361 gctcaacatg tcgaaaggcg ccgggtcctc gcccagcaac cagttgttga ccacgtagtt
      421 ccacaccaga tcccgggcac gcaacagatt gaacgtcgtg gccatgttgt ctgccggcag
      481 gtatcccttg cgtgccatcg tgccctcgag gcgctggatt gcggtttcat cggtgaacac
      541 gccgagctgc ccgggcaagg tgaagtcgag cagggtgttc atcacggtca acgaggcgac
      601 ccgatcctgt tcctcacggg cggtgagcca ggcggccagg gcggccgcca tggtgccgcc
      661 aagacacagc cccgccacgt tggtctgcgg cgctccggtg atctcctcga caacctccaa
      721 cgcggccagc agcccctcgc gcaggtaatc actcatggac agctcaccca gagcatcgtc
      781 cgggttccgg tagctgatca tgaagcaggt gtgcccatgc tggaccgccc actcgacaag
      841 gctctttccg ggagcgagat ccatgatgta gtacttgttg atccatggcg gactgaacaa
      901 cagtgggacg gcgtagaccg tttcggtctg cggctggtac tggatcaact cgatcagccg
      961 gttgcggaac accacactgc ccggggtagc agccagctca tgaccgggac ggaactgccc
     1021 tggggtgacc tggcggggca tgcctttgtt ggtcgccagg tcgcggagcg cattgctggc
     1081 accgcgcacc aggctaaggc cggcggtgtc gaaggccttc ttcagcgcta ccgggttggt
     1141 caataaccag ttggtcggcg cggcggcgtc gagcacctgc cgcagtgcga actcggcctt
     1201 ttgccgagta gcgtcatcca actttgcctc aaccagcagg tcctgcagga aatcctccca
     1261 caacgcgtat tgctgacgta ccaggtagaa cagggggttg ctggtccagg ccgggtcgga
     1321 gaaccgccga tccgcctccg gctggacggg tccctgctgg tccagcccta tgctacgcag
     1381 cgctgcggtg acggcagctt gggcgctgcg catgccgtac tccatcgccg agcgcgacaa
     1441 tgccgccgga tttccggcga ccgacatcgc gagcttgccg agtgcctgcc ccaacccggc
     1501 gggatccaac tcggccatcg ttgagtcgaa accaaacagc gatcgcatgg acgaggcgat
     1561 gtcagcggcg tcctggtgta cctcggccat cgggtcaccg gcctcgccgg tcggcctggt
     1621 cggcactgtc acgggtccac ctccactttg acgtccaagg gacgtcgtcc tgtgcacgag
     1681 cgtcccgacg cggcggctgc gacgcaagtg cctgtgaggg gcatcgctca tcgtgcctgg
     1741 cagtatccgg cgctgtgcga gcagtggtga gccgagtgac cgaagcagca gtactcgtaa
     1801 atggccacgt agtcggtgaa ttggaccggc ccggcctgct ggtgctgctg ggcgtgaccc
     1861 atgatgacgg atcggcgcag gccgaattga tggcacgtaa actgcacgag ctccgcgtcc
     1921 tgcgggacga gcgctcggtc gccgaaaccg gcgctggagt gttggtggtc agccagttca
     1981 ccctctacgg atcgacacgc aagggcagga ggccctcgtt cacctctgcc gcccgcccgg
     2041 agcatgccga accgttgatc gacgaggtgg tcacccggct ccgagcctgc ggtgtgaccg
     2101 tggccaccgg gcgcttcggc gcgacgatgg ccgtgcgcag cgtggccgac gggcccttca
     2161 ccatcctgct cgacgtgtga cgctcttcaa gaaccacgaa tctggtcgat aagtgcctta
     2221 gcggtgacta acctgagaag tgtctgaggg tctcgcgact cgggcacttc cccatgaact
     2281 cgttcgtcgt tcggggcgag agtccgggaa cggaatccgg gctcccgacg ttgcaatgga
     2341 catcgccgcg ggtacccgat ggccagacac gtgcagcgtc gcgcgccgat tcgccgaacg
     2401 caccgcaagt cggcacgagg atccgtcgca ggaaaggaac ctgatgaccg ccgcgcagat
     2461 tacccaggaa gcggagactg tcctcgaggc agaccttgac gcgcagagcc cggcagcgga
     2521 cctggtccga gtttacctca acggtatcgg acgcaccgcc ctgctcagtg cgcagcagga
     2581 ggtcgacctc gccaagcgga tcgaagctgg ggtgttcgca cggcacatcc tggataccgc
     2641 gccgcggttg tcccccaacc ggcgggccga tctgacgcgg ctggtgtggg atggtcaccg
     2701 agccaaggac cacctgctgg aggcgaacct gcggctggtg gtgtcgctgg ccaagcgcta
     2761 caccggccgc ggaatgcctc tgctggacct gatccaggag ggtaatctcg gcctgatccg
     2821 cgcggtcgag aagttcgact acacc
//
LOCUS       DASVXZ010000019         2865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1705464, whole genome shotgun sequence.
ACCESSION   DASVXZ010000019 DASVXZ010000000
VERSION     DASVXZ010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2865
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1705464"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..769)
                     /locus_tag="VF788_00350"
     CDS             complement(59..769)
                     /locus_tag="VF788_00350"
                     /EC_number="2.1.1.163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="demethylmenaquinone methyltransferase"
                     /protein_id="HEX8932657.1"
                     /translation="MPRAGLDKDPREVAAMFDAVAGRYDLTNTVLSFGQDRRWRRFTR
                     LAVAARRGERVLDLAAGTAVSTIEFTRTGAWSVAADFSLGMLRAGRHRKVPLVAADAL
                     ALPFADETFDAVTISFGLRNVADLDAALAEMARVTRPGGRLVICEFSTPTSWLFRTIY
                     LEYLMRALPAVARRVSSNPDAYVYLAESIRAWPTQQQLAQRVAAAGWTDVAWRDLTGG
                     IVALHHAIKPSSFLTGRR"
     gene            complement(1145..2035)
                     /locus_tag="VF788_00355"
     CDS             complement(1145..2035)
                     /locus_tag="VF788_00355"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEX8932658.1"
                     /translation="MIGIARNPYSMNVSAHLIETASRLGVPVRVIDLPTLTVDIGIAG
                     EVVVRDAAGIIDIVSLAPYLLVGYPAAVHAFRLLSQRAHVQNPVDSVLTADDKAATAV
                     RLSGSILPQVPSVICPLDLQRVLSAAEKIQYPVVLKRAHGAEGRWVRRAVDPVALVKE
                     FHELESRGPGVLILQPQVTEFYERSIRVVITGGRLLAATLRTAVGNEWRSNIAYGATQ
                     HPIDLTVTERQLAEDAAHTIGLGHAGIDILRTTHGPLVLEVNSYPDFTNMLPCFNEDL
                     SRAVLRACLPPYGREPHDPW"
BASE COUNT          615 a          881 c          861 g          508 t
ORIGIN      
        1 cgcgttccgg atgcagactg cggttatcca ggcctctttt acagcagttt tgtctacttc
       61 aacgccgtcc ggtgagaaag ctggagggtt tgatcgcatg gtgcagcgcg acgatgccgc
      121 cagtgaggtc acgccaggcg acgtcggtcc aacctgccgc cgccacccgc tgcgccagct
      181 gctgctgagt gggccaggcg cggatagatt cggcgaggta gacgtaggca tccgggttgc
      241 tgctcacccg ccgggcaacc gccggcagcg cgcgcatcag gtactccaga tagatcgtgc
      301 ggaacaacca cgaggtgggg gtggagaact cgcagatgac cagacggccg cctgggcggg
      361 tgacccgcgc catctcggcc agcgcggcgt cgagatcagc cacgttgcgc aacccgaagg
      421 agatcgtgac cgcgtcgaag gtctcatcgg cgaagggcag ggccagcgcg tccgctgcga
      481 ccagcggaac cttgcgatgc cgacccgcgc gcagcattcc cagggagaag tccgctgcca
      541 cgctccatgc tccggtcctg gtgaactcga tggtggagac cgcagtaccc gcggcaagat
      601 cgagcacccg ctcccctcgc ctagccgcca ccgcgagccg ggtgaaccgt cgccaccgcc
      661 ggtcctggcc gaacgacagc accgtgttcg tcaggtcata acggcccgcc accgcgtcga
      721 acatggcggc gacttcgcgg gggtccttat cgagacctgc tctcggcatc gcgacaccct
      781 acggttggtg gcccgtcgac taccgtcaag gccacgcggg cgccgtcaac cactacccaa
      841 gtcggtgagt gcggcaggcg tgcggccagc caccgacggc acggacccaa cgagcacacc
      901 cgaccctgga gatcttgact cgcatcgacc cttactgtcg ctgcgttgcg gcgggatccg
      961 ttgccgttgc gtagccgaat ggccgtggtg aacgccgcca gcggacaaac acaggcaggg
     1021 tgcacctctt cgcagaaaga gccgatccca gcgcccagcg ataccacacc atgtagacaa
     1081 gagccggcgt gttcccgtca tgacgttgag ttccagtcgg tggagcgaga ggagaacact
     1141 gtagtcacca cggatcatga ggttctctac catatggcgg taggcatgct cgtagcacag
     1201 cgcgactaag gtcttcgttg aagcagggga gcatgtttgt aaagtctgga taggaattta
     1261 cctcaagcac aagagggcca tgcgtggtcc gcagaatgtc gattccagca tggccgagcc
     1321 cgatggtatg ggccgcgtct tcagctagct gcctctctgt gaccgtcaag tcgatggggt
     1381 gttgcgttgc tccgtacgcg atgttgcttc gccactcgtt cccgacggcc gtgcgtagcg
     1441 tcgccgccaa taaacgccca cccgttatta cgaccctaat gctgcgttca taaaattccg
     1501 tgacctgcgg ttgtaaaatt aagaccccag gacccctgga ctcgagctcg tgaaattctt
     1561 tcacaagggc gacgggatct acagcgcggc gaacccatcg accctctgcg ccgtgagcac
     1621 gtttcaacac taccggatat tgtatttttt ccgccgccga gagcacacgc tgcaggtcga
     1681 gtgggcagat aacgctcggc acctgaggaa ggatagaacc tgacaaccgc accgccgtgg
     1741 cagccttatc gtccgccgtc aacacactat ctacgggatt ctgaacatgt gcccgctgag
     1801 acagcaaacg aaaagcatgg accgccgcgg gataaccgac aagcaggtaa ggggccaggc
     1861 tgacaatatc aataataccc gccgcgtcgc gaacaacgac ttctccagca atgccgatgt
     1921 ccaccgtgag cgttggaaga tcgataacgc gaacggggac accaagtcta gaggccgtct
     1981 caatcaagtg agcagaaaca ttcatagagt aaggattgcg cgcgattcca atcatcgtat
     2041 cgtaacgacc acgtgaatgg ggtaccatac atcgcttcca aatatttgcg gcccacgcac
     2101 gacacgcacg tcgacaacca tacctgaaca agaacgccag gcgcgtacct ggcagagggg
     2161 gactacttct tcgacaccca aacccccggc cagctacacc ttcagtgccg atgtgaccgg
     2221 ccgcagcgcg gcgcgttccg cagagatcga attcatcatc accgggctcc gaccagcgcc
     2281 ggcccaacgg caggcaccga aaacctggag taaccagcac accctgtcac ccaccatgtg
     2341 ggtgagatca gtaccgagat gtccggttgg ctcaacgtgt gtttccactg gggtgctggt
     2401 gcgccggcgg acaggcgccg cgtagtaatg aaatagggaa ttcgctgggg attggtggga
     2461 acttgctggg ttccttgcgt gtgacgccga taaccggtac ttcgtgaggt gttgttgacc
     2521 aacgatttag cgctgcgacg aaggtgagta gatgagcctc gaagaggcgt tacttatcgc
     2581 gttgcgcgcg gtgcgcgccc accggttgcg ttccacgctg accatgctcg gcctgatcat
     2641 cggagtctcg gcggtggtcc tgctagccac ctgcggccaa ggggtaagaa ctccgtcgat
     2701 gcacgcatcg aacccgtggc caacaacatc accatcgtgc cgaagagcgc caattggcgt
     2761 gcctcccaga tttcggatgg cggacccaat aaggtcccgt ccggaatgga ggatgataca
     2821 tgcgggagaa gcgccggaaa tatagtccgg agtacaaatc tgaag
//
LOCUS       DASVXZ010000020         2708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1256212, whole genome shotgun sequence.
ACCESSION   DASVXZ010000020 DASVXZ010000000
VERSION     DASVXZ010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1256212"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            288..>2708
                     /locus_tag="VF788_00360"
     CDS             288..>2708
                     /locus_tag="VF788_00360"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005447110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HEX8932659.1"
                     /translation="MGWNNPPVRWADLERALSGRPKSAHRDEKPPGDGGDSPAWTRHR
                     DRYEPPPAQPPPTDTQPCIPYAELHCHSNFSFLDGASHPEELVEEAARLGLDAIAITD
                     HDGMYGVVRFAETARELGIKTVFGAELSLGLTAPQNGVTDPEGEHLLVLARDPEGYRR
                     LSRVISDAQIAGREKGKPVYDLDAVAAAAGGHWVVLTGCRKAAVRAALEREGPVAAAA
                     QLRWLTELFGAGNVVVELTTNGLPHDTERNDALAALATAHGLGTVATTAAHYATPSRY
                     RLATALAAIRARCSLDEMDGWLPAAATAHLRSGAEMAEMFARWPGAVERAAALGRECA
                     FDLHLVAPDLPPFDVPRPHTEASWLRELTWLGAAIRYGSYDERPGAYHQIEHELAVIE
                     EKNFPGYFLIVHDIVAFCRRADIFCQGRGSAANSAVCYALGITSVDAVAMDLLFERFL
                     APDRDGYPDIDLDIESDRREEAIQYVYRRYGRDCAAQVANVITYRARSAVRDVAKALG
                     YSTGTQDAWSKQIDRWGPLRQGDVAETDIPQPVLALAAELEGFPRHLGIHSGGMVICS
                     RPVAEVCPVEWARMEHRSVVQWDKDDCAAARLVKFDLLGLGMLSALHYAVDLVGRHYR
                     HKVRLSDLQPTDPAVYAMLARADSVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIR
                     PGPIQGNSVHPYIRRRNGQEEVTYLHPLLEKSLAKTLGVPLFQEQLMQMAIDVGGFSP
                     AQSDQLRQAMGAKRSSERMERLRGRLYAGMAEQGITGEIADRIYEKLAAFANFGFPES
                     HSVSFAYLV"
BASE COUNT          428 a          921 c          923 g          436 t
ORIGIN      
        1 agatcgatga aatcgtcgcc aacaacgagg aatatcgtat gctggtccgc cgtctggagg
       61 ccgcgttcga cggcgaggca gccacgtcct tcaacttctc ggatcttccg tccggcgatg
      121 agctcgccgc cgagctggag cgctttctcc gcgaccagca ggaggagcag tagcgagggt
      181 tgctcggcgt ccgggtttcc ccggaatgtc gggaccactt gctaaaatcg aacacatgtt
      241 cgataggatt ccatccggca cccacccgct cccctcctag agccaccatg ggctggaata
      301 acccgccggt gcggtgggcc gatctggagc gcgcgctgtc cgggcggccc aaatcggccc
      361 accgtgatga gaagcctccc ggtgacggcg gggacagccc ggcatggaca cgtcatcggg
      421 accggtacga gccaccgcca gctcagcctc cacctacgga tacccagccg tgcattccct
      481 atgccgagct gcattgccac tccaatttca gcttcctgga cggggccagc catcccgaag
      541 agctggtcga ggaggcggcc cggctgggtc tggatgcgat cgcgatcacc gatcacgacg
      601 ggatgtatgg agtggtgcgc tttgccgaga cggcccgcga gttggggatc aagaccgtgt
      661 tcggggcgga gctgtccctc ggtctcaccg cgccacagaa cggggtaacc gacccggagg
      721 gtgagcacct gctcgtgctg gcccgtgacc ccgagggtta ccgcagattg tcccgggtga
      781 tcagcgacgc ccagatcgct ggacgggaga agggcaaacc ggtctacgac ctcgacgccg
      841 tcgccgctgc cgcgggcgga cactgggtgg tgctcaccgg ttgccgcaaa gcagcggtac
      901 gagcggcgct ggagcgcgaa ggcccggtcg ccgcggcagc gcagctacgc tggctgaccg
      961 agctgttcgg cgcgggcaat gtcgtcgttg agctcaccac caacggcttg ccccacgaca
     1021 ccgagcgaaa tgatgcgctc gccgcgctgg ctacggcgca cgggctgggc accgtcgcca
     1081 ccaccgccgc gcactacgcc accccgtccc ggtaccggct ggccaccgcg ctggccgcga
     1141 tccgggcccg gtgcagcctc gacgagatgg acggctggct tccggccgcg gcgacggcgc
     1201 acctgcgctc cggtgccgag atggccgaga tgttcgcccg ctggcccgga gccgttgagc
     1261 gggccgccgc gctgggccgg gagtgcgcct tcgacctgca tctggtagcg ccggacctgc
     1321 cgccgttcga tgtccccagg ccgcacaccg aggccagctg gctgcgcgag ctcacctggc
     1381 tcggcgcggc catccgctac ggcagctacg acgagcgccc cggcgcttac caccagatcg
     1441 agcacgagct ggcagtcatc gaggagaaga acttccccgg ctacttcctc atcgtgcacg
     1501 acatcgtggc gttctgccgg cgggcggaca tcttctgcca gggccggggc tcggcggcca
     1561 actctgcggt ctgctacgcg ctgggcatca cgagtgtcga tgcggtggcg atggacctgc
     1621 ttttcgagcg gttcctcgcc ccggaccggg acggctaccc cgacatcgac ctggacatcg
     1681 agtccgatcg ccgtgaggag gccatccagt acgtctaccg gcgatacggc cgagactgtg
     1741 ctgcccaggt cgccaacgtg atcacctacc gggcccgctc ggcggtgcgg gacgtggcca
     1801 aggcgctggg ctactcgacc ggcacccagg atgcctggag caagcagatc gaccggtggg
     1861 gccccctgcg gcaaggtgat gtcgcagaga ccgacatccc ccagccggtg ctggcgctgg
     1921 ccgctgagct ggagggattc ccgagacacc tgggcatcca ctccggcggc atggtgatct
     1981 gctcccgccc ggtggctgag gtctgcccgg tggagtgggc ccggatggag caccgctcgg
     2041 tggtgcagtg ggacaaagat gattgtgctg ctgcgcgtct ggtgaagttc gacctgctcg
     2101 ggctcgggat gctctccgcg ctgcactacg cggtcgatct ggtgggccgc cactaccggc
     2161 ataaggtgcg gctctcggat ctgcaaccca ccgaccccgc cgtctacgcg atgctggccc
     2221 gggctgattc ggttggggtg ttccaggtgg agtcccgcgc gcagatggcc accttgcccc
     2281 ggctcaaacc gcgctgtttc tacgacctgg tggtcgaggt ggcattgatc cgccccggtc
     2341 cgatccaggg caattcggtg cacccctaca tccgccggcg caacggccag gaggaggtca
     2401 cctacctgca cccgttgctc gagaagtccc tggccaagac cctgggggtg ccgctgttcc
     2461 aggagcagct gatgcagatg gccatcgacg tcggtgggtt cagcccggca cagtccgacc
     2521 agctccgcca ggccatgggg gccaagcggt ccagcgagcg catggagcgg ctgcgggggc
     2581 gcctctatgc gggcatggcc gagcagggga tcaccgggga gatcgccgac cggatctacg
     2641 agaagctggc cgccttcgcc aacttcggct tccccgagag ccactcggtg tcgttcgcct
     2701 acctggtg
//
LOCUS       DASVXZ010000021         2380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1256301, whole genome shotgun sequence.
ACCESSION   DASVXZ010000021 DASVXZ010000000
VERSION     DASVXZ010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1256301"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..758
                     /locus_tag="VF788_00365"
     CDS             <1..758
                     /locus_tag="VF788_00365"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HEX8932660.1"
                     /translation="LVAERVADSKVLSLIRQILTAGVLRDGVYESTIAGTPQGGVISP
                     LLSNIYLHVFDEQMQRAGFQLTRYADDWLCVCRTREEAERALASARAVLEGQLGLRIH
                     PEKTRIVHVSQGFEFLGYKIGLGRGLRFKSGGIGLYAIPRQRSIDRFKDKVRALTRRR
                     IAVPLEELIYVLNPVVRGWGMYYRRANVRRLFNRLNRWIVRRIWGWRFKRWRNAGWRT
                     LPETRLYGEYGLVNLLQLIPSMREYYRQKGCAH"
     gene            1292..2275
                     /locus_tag="VF788_00370"
     CDS             1292..2275
                     /locus_tag="VF788_00370"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8932661.1"
                     /translation="MLNAVYEVDFKGFSYGFRPRRGPHDALDALAVGLERKPVNWVLD
                     ADIRDFFGRIDHSWLRKFIEHRIADKRIWRLIGKWLAAGVIEDGQWSACEQGSPQGAS
                     ASPLLANVYLHYVFDLWADWWRRHRATGEVIIVRFADDYTVGFQYQDDARRFLDELRE
                     RLAKFGLELHPDKTRLIEFGRRAAIDRRQRGLGKPQTFDFLGFTHICARMPAGRFWVR
                     RITIKKRMRAKLAEIKDQLRCRRHDPIPVQGRWLTHVLRGHMAYYSVPGNSDAVSAFR
                     YQITLLWHRSLRRRSQRGRVNWDRMDRYATRWLPKVQTMHPYPDVRLAART"
BASE COUNT          444 a          647 c          847 g          442 t
ORIGIN      
        1 cgctggtagc ggaacgagtc gccgacagca aggtgctgag tctgatccgt cagatactca
       61 cggccggagt actgcgagac ggtgtctatg agagcacaat cgctggcacg ccacaaggcg
      121 gggtcatcag tccgttgctc agtaatattt atctgcacgt ttttgacgag cagatgcagc
      181 gggcgggatt ccaactcacg cgctacgctg acgattggct gtgcgtatgc cggactcgcg
      241 aggaagcgga acgggcgctg gcgagcgccc gtgcggtgct ggaaggacag ctcgggttac
      301 gcattcatcc agagaagacc agaattgtgc acgtcagcca ggggttcgag ttcttgggct
      361 ataagattgg actgggtcgg gggttgcgct tcaagtcagg tggtatcggc ttgtatgcga
      421 tacctcggca acggtcgatt gatcggttca aggacaaggt gcgggcgctc acacgacgtc
      481 gcatcgccgt acccttggaa gagctgatat atgtcttgaa cccggtggtc cggggatggg
      541 gcatgtacta tcggcgcgcg aacgtgcgcc ggttgttcaa tcggctcaac aggtggatcg
      601 tgcgtcggat ctggggttgg cggttcaaac gctggcgcaa cgccggatgg cgaacgctac
      661 cggagacccg cctatacggt gaatacgggc tggttaacct tcttcaactg attcccagca
      721 tgcgcgaata ctaccgccag aagggctgcg cccattgaga gccgcttgcg ggaaaactgc
      781 atgagcggtt cggtagggcg ggcggaggca gcggactact aatgtctgcg gcctcccccg
      841 acccgacacc tgcgaacctg ccgaacaagg ctgcggctgc ggaggtgggg gaggaaaggg
      901 ggcgagccaa ggggaacacg gccggcaaaa cgcatcccgg acacagcgcc gggcagggtg
      961 cgtcgagtgc gctgggtcgt gtgcgtgagg tggcacgacg agataagggt gcgcggttta
     1021 ctgcgttgct gcatcacgtc acggtttccc gactgcgggc ggcgtattgg gcgattagcc
     1081 cgaaggcggc gcccggggtg gatggggtga cgtggatgga ctacgggagg aatctggagg
     1141 ctcgtctggc cgatctgcat gagcgggtgc agtcggggcg gtatcgggca accccgagca
     1201 ggcgggcgta catcccgaag gccgatgggc ggctgcggcc gttggggatc gcgtcgttgg
     1261 agacaagatc gttcagcggg cggtggtcga ggtgctcaac gcggtctacg aggtggactt
     1321 caagggcttc tcgtatgggt ttcggcccag gcgtggtccg catgatgcgt tggacgcgct
     1381 ggcggtcggg cttgagcgca agccggtgaa ctgggtgctt gacgcggaca tccgcgactt
     1441 cttcggccga attgatcatt cgtggctgcg gaagtttatc gagcatcgga tcgcggacaa
     1501 gcgaatctgg cggctgatcg gcaagtggct ggccgctggt gtcattgagg acgggcagtg
     1561 gtcggcatgt gagcagggtt caccgcaagg ggcatcggca tcgccgctgc ttgccaacgt
     1621 gtacctgcac tacgtgttcg acctgtgggc cgactggtgg cgacgtcacc gggcaaccgg
     1681 cgaggtgatt atcgtgcgct tcgctgacga ctacaccgtc gggtttcaat accaagacga
     1741 tgcgcggcgg ttcctggatg agctacgcga gcggttggcg aagttcggct tggagctgca
     1801 tccggacaag acgcgactga tcgagtttgg gcggcgtgcc gccatcgatc ggcggcagcg
     1861 gggtctgggt aagccacaga cgttcgactt cctcggcttt acgcatatct gcgcgaggat
     1921 gccggccggg cggttctggg tcaggcgcat tacgatcaag aaacgcatgc gggcgaaact
     1981 ggcagaaatc aaagaccaac tgcggtgtcg ccggcatgat cccatcccgg ttcagggacg
     2041 gtggctgacc cacgtgctgc gagggcacat ggcctactac tccgtgccgg gcaactccga
     2101 tgcggtatcg gcattccgct accagatcac cctgctgtgg catcgctcgc tacggcgacg
     2161 aagccaacgc ggacgggtca actgggaccg gatggataga tacgcgactc gatggcttcc
     2221 caaagttcag acgatgcatc cctaccccga cgtgcgcctt gcagccagaa cctgaggcag
     2281 gagcccgatg cggtagttcc gcacgtcggg atccgtgcgg ggggccgccc gcaagggcgg
     2341 tccctaccac gacacgcgaa gcctgccaga cggtcgtcga
//
LOCUS       DASVXZ010000022         6082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_987345, whole genome shotgun sequence.
ACCESSION   DASVXZ010000022 DASVXZ010000000
VERSION     DASVXZ010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6082
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_987345"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..984)
                     /locus_tag="VF788_00375"
     CDS             complement(<1..984)
                     /locus_tag="VF788_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tex-like N-terminal domain-containing protein"
                     /protein_id="HEX8932662.1"
                     /translation="MRWRTSVLIQRIAEELGVAQRQVGAAVELLDGGATVPFVARYRK
                     EATGGLDDAQLRTLEERLQYLRELNERRMAILNSIREQGKLDDALEARIMAVDSKARL
                     EDLYLPYKPKRRTKAQIAREAGLEPLAEALLTDPTQDPDATAAGYVGSEAGVPDAAAA
                     LEGARAILGERFAEDADLIGPLREQMWSQGRLTSRVREGQQEAGAKFADYFEFSEPFT
                     KLPSHRILALFRGEKEGVLDLSPQPTAQPDDSDEHYEQAIAARFGVDDRGRPADRWLA
                     ETVRWAWRTRILMHLGIDLRMRLRQAAEVEAVRVFAANLRDLLLAAPAGSRP"
     gene            1194..2360
                     /locus_tag="VF788_00380"
     CDS             1194..2360
                     /locus_tag="VF788_00380"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX8932663.1"
                     /translation="MGAWQTLVLGRIGRRGGRVLRTQRAIGAVVIMLLAVSCGGSAGG
                     GQQTRNYFIAADEVAWNYAPSGTNMFTGAPFDEAANKFVQAGPDRIGATYMKCLYHGY
                     TDAKFIQQITWPADEQYLGALGPVIRAQVGDTIKVTFRNNCSFPASIHPHGVFYNKKD
                     EGAPYNDGRTAPDKVGDAVAPHQQYVYTWEVPERAGPGPMDGSSVMWMYHSHTDEVAD
                     INSGLMGPMEITARGKARPDGSPNDVDREIFALFMVMDENSSHYLEAERTKLAKPPAA
                     DDADFQESNKMHSINGFVYSNGPLITMRQGQHVRWYVMSMGNEVDLHTPHWHGNTVIA
                     NGMRTDTVSLLPATMVTADMVPDDPGIWGFHCHVSDHIIAGMLARYQVLPAQPQ"
     gene            2492..3214
                     /locus_tag="VF788_00385"
     CDS             2492..3214
                     /locus_tag="VF788_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932664.1"
                     /translation="MELDVTVRRHGQVAIVHPRGFLTLHTATELRRVLVKELVSHGRV
                     VVDLDGFRLGPQASWVMIFPTVLAECGGWPAAKIALCRPDEEMTEALAAGGVPAVVPV
                     YPLQLEAKGAIDRRPDVVRAQTGLPHNMRAPASARQLVRDICPLWQIDHDLQDTAQVV
                     VSELVDVTVGPAGRAAELILERGPQGLQLAVQDASSSRPEELAIDPVRKGLVGELLGN
                     LTTAWGLHVAHGGKTAWAMISG"
     gene            3346..5265
                     /gene="htpG"
                     /locus_tag="VF788_00390"
     CDS             3346..5265
                     /gene="htpG"
                     /locus_tag="VF788_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEX8932665.1"
                     /translation="MNTQVETLEFEAEARQLLQLMVHSIYSNKDTFLRELISNSSDAL
                     DKLRLEAFRNKDLQVDTTDLHIDIEVDKDQRTLTVRDNGIGMSRDDVVQLIGTIAKSG
                     TVEFLDKLKESKDATASPELIGQFGVGFYSSFMVADKVTLLTRRAGESHATRWESGGA
                     ETYTIESVDDAPQGTAVTLHLKPEDKEDELHDYTDSWKIKEIVKRYSDFIAWPIKMAV
                     ERTDSDGKNTVETETINSMKALWARPKSDVGEDEYKEFYKHVSHDWTDPLETIRMQAE
                     GTFEYQALLFIPSRAPLDLFMRDRKRGVQLYVKRVFIMDDCEALMPEYLRFIKGVVDA
                     QDLSLNVSRETLQQDRQIQMMRRRLVKKVLSTVKGMATGNVDQYKTFWKEFGRAVKEG
                     LISDFENRDTILEISSFASTHDEEQLTTLREYLERMKEGQEHIYYMTGESRLIIENSP
                     HMEAFRAKGFEVLLLTDPVDEMWVDSVREFEGKRLQSVAKGQVDLDTEEEKKTTESER
                     ERQNEEFAALLSWLTTTLQADVKEVRLSSRLTTSPACIVGDSHDVTPTLEKMYRAMGQ
                     GMPPIKRILELNPTHPLVSELQKAHTEGADNARLAETAELLYGMALLAEGGELSDPSR
                     FIRLLADRLAQTLEK"
     gene            5474..>6082
                     /locus_tag="VF788_00395"
     CDS             5474..>6082
                     /locus_tag="VF788_00395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932666.1"
                     /translation="MDPGRQRLSQRRKAAAFTQGSRTDLLAPELSTVIRPETAGTEPL
                     PPARRNVASAPPVSMDQLADLFTEKTDATRPTGAARPEFPESTQAQRPYRPSPAVTPA
                     RSWRLKRFPAAGLLAAALAGGAASVLMGPPHRVPVPEDSAGTPSLTAPVVAVPAPDPV
                     AGTSSPTKDAMGARQPAPATEPDKAADSATSSRTNAVPSRPEV"
BASE COUNT         1195 a         1969 c         1917 g         1001 t
ORIGIN      
        1 cgggcgggaa ccagcaggcg cagcgagcag cagatcgcgc agattggcgg cgaacacccg
       61 caccgcctcg acctcggccg cttggcgcag ccgcatccgc aggtcgatgc cgaggtgcat
      121 caggatgcgg gtgcgccagg cccaccgcac cgtctcagcc agccagcgat ccgccggccg
      181 gccccggtca tcgacgccga accgagccgc gatggcctgc tcgtagtgct cgtcggagtc
      241 gtccggctgt gccgttggct gcggggatag atcgagcacg ccctccttct cgccccggaa
      301 cagcgccagg atccggtggg agggcaactt cgtgaacggc tccgagaact cgaagtagtc
      361 ggcgaatttc gcgccggcct cctgctggcc ctcacggacc cgcgaggtca gccgcccctg
      421 cgaccacatc tgctcgcgta acggcccgat gaggtcggcg tcttcggcga agcgctcgcc
      481 caggatcgct cgggcaccct cgagcgcagc ggcagcgtcg ggcacgcctg cttccgaacc
      541 gacgtagccc gcggcggtgg catccgggtc ttgggtgggg tcggtgagca gcgcctcggc
      601 cagcggctcg agaccggcct cccgagcgat ttgcgccttg gtccgccgtt tgggcttgta
      661 gggcaggtag agatcctcca gccgcgcctt cgagtccacc gccatgatcc gcgcctcgag
      721 cgcatcgtcg agcttgccct gctcgcggat cgagttgaga atcgccatcc ggcgctcgtt
      781 cagttcgcgc aggtactgca gccgttcctc caacgtgcgc agctgggcat cgtccagtcc
      841 gccggtggct tccttgcggt accgggcgac gaagggcacc gtggccccgc cgtcgagcag
      901 ctcgacggca gcccccacct gccgctgggc cacccccaac tcctcagcga tccgctggat
      961 cagcacgctg gtcctccatc gcaagccaac tttgaaccga ttgcacgcca gggagcccct
     1021 gtagcgccac gtggaacctt atgcagcggc tggtggtgac gtggcgcgca ccggctggtt
     1081 cagcggcgag cggccggaca ttggcgtgct ctgtacgtgc ctacccgcac tttacttaag
     1141 gtgtgcctaa cctacctcga gtgcggtatc cgctccgacc gcaggagttc gtgatgggtg
     1201 catggcagac gctggtcctg ggtcgcattg ggcgccgtgg tggcagagtg cttcggaccc
     1261 aacgggctat cggcgcggtt gtgatcatgc tgttggcggt gagttgcggc ggcagcgcgg
     1321 gcggcggcca gcagaccagg aactatttca ttgcagccga cgaggtggcc tggaactacg
     1381 cgccatcggg aaccaacatg ttcaccggag cgccgttcga cgaggcagcg aacaagttcg
     1441 tccaggcggg gccagaccgg atcggcgcca cctacatgaa atgcctctat cacggctaca
     1501 ccgatgccaa attcatccag cagatcacgt ggccggccga tgagcagtac ctgggggccc
     1561 tcggacctgt gatcagggcc caggttggcg acactatcaa ggtcacattc cggaacaact
     1621 gctcattccc cgccagcatt catccacatg gtgtgttcta caacaagaag gacgagggcg
     1681 ctccctacaa cgacggcagg accgcgccgg acaaggtcgg cgacgcggta gctccccacc
     1741 agcaatacgt ctacacctgg gaggtacccg aacgcgccgg accaggcccg atggacggca
     1801 gctcagtgat gtggatgtac cactcacaca ctgacgaggt agccgacatc aactccggcc
     1861 tgatggggcc catggagatc accgcacgcg ggaaagcccg ccccgacggc agcccgaatg
     1921 acgtcgatcg agaaattttc gcactgttca tggtaatgga tgaaaatagt tcgcattacc
     1981 tggaggccga gcggaccaag ctggccaaac cgcccgctgc cgatgacgcg gacttccagg
     2041 agagcaataa aatgcactcg atcaacggat tcgtctacag caatggccca ttgataacca
     2101 tgcgccaggg gcagcacgtg cgctggtatg tgatgagcat gggcaacgag gtggacctgc
     2161 atacgccgca ctggcacggc aacacggtga tagccaacgg tatgcgaact gacaccgtga
     2221 gcctgctgcc cgcaaccatg gtgaccgccg acatggtccc ggatgatccc ggaatctggg
     2281 gattccactg ccacgtcagc gaccacatca ttgccggcat gctggcccgc tatcaggtcc
     2341 ttccggccca gcctcagtga ggtcgcagcg gggatggtcc ggccgcttag cgactggatt
     2401 tcgtcgcggg gctgcgaaat tgcccaggca gttgtaggct ctctcaaccg cttcgcgcgg
     2461 gccatgggct aggtaggcgg aatcgatgga catggagctc gacgtcaccg tgcgtcgcca
     2521 cgggcaggtg gcgatcgtgc atccacgcgg attcctgacg ttgcataccg caacggagtt
     2581 gcggcgggtg ctcgtcaaag agctggtcag ccacggccgg gtcgtggttg acctcgacgg
     2641 gttccggctg gggccgcagg cgtcctgggt gatgatcttc cctaccgtgc tggccgaatg
     2701 cggtgggtgg cccgccgcga agatcgcgct gtgccggccg gacgaggaga tgaccgaagc
     2761 gttggccgcg ggcggggtgc ctgccgtggt accggtttat cctctgcagc tggaagccaa
     2821 gggtgcgatc gatcgccggc ccgacgtcgt gcgtgcgcag accgggttgc cgcacaacat
     2881 gcgcgccccg gccagcgccc ggcagttggt ccgggatatc tgcccgctgt ggcagatcga
     2941 tcacgatctg caagacaccg cccaagtcgt cgtcagcgag ctcgtcgacg tcaccgtggg
     3001 ccccgcgggc agggcggctg agttgatcct ggaacggggt ccccaggggc tacagctggc
     3061 ggtccaggat gcctcgtcgt cccggcccga ggagctcgcg atcgacccgg tgcgcaaggg
     3121 actggtgggc gagctgctcg gtaacctcac cacggcatgg ggactccacg tcgcacacgg
     3181 cggcaagacc gcttgggcca tgatcagcgg ctaagccccg gcgggcgtcc cagatctttc
     3241 gacgaccgca tcctccactg gccctcggcc ctgccgagct ggtttcatca tggggaaccg
     3301 gcccggtcgg tcagcagccc aagtatcctt ccagaaagga atgcagtgaa cacgcaggtc
     3361 gaaacgctcg agttcgaggc cgaggcgcgc cagctgttgc agttgatggt ccattcgatt
     3421 tactcgaaca aggacacctt tctacgggag ctcatctcta actcctccga tgcgttggac
     3481 aaattgcgac tggaagcgtt tcgcaacaaa gacctgcagg tggacaccac tgatctgcac
     3541 attgacatcg aggtcgacaa agaccagcga acactcactg ttcgagacaa cggaatcggc
     3601 atgtcacgcg acgacgtggt acagctcatc ggtaccatcg cgaaatccgg caccgttgag
     3661 ttcctcgaca agctgaaaga atcaaaagat gcgacagctt ctcctgagct catcgggcag
     3721 ttcggtgtcg gtttctactc cagcttcatg gtggccgaca aggtcacgct gctgacacgg
     3781 cgcgccggcg aaagtcacgc cacccgctgg gaatccggcg gtgcggagac ctacaccatc
     3841 gaatcggtcg acgacgcgcc gcaggggacc gcggtcaccc tgcatctcaa accagaggat
     3901 aaggaggacg agctccacga ctacacagac agctggaaga tcaaggagat cgtcaagcgc
     3961 tactccgact tcatcgcatg gccgatcaag atggcggtcg agcgcacaga ctccgacggc
     4021 aagaacacag tcgagaccga gacgatcaac tcgatgaagg cgctctgggc acgacccaag
     4081 agtgacgtcg gagaagacga gtacaaggaa ttctacaagc acgtcagcca cgactggact
     4141 gaccccttgg agaccatccg catgcaggcg gaagggacat tcgaatacca ggcactgctg
     4201 ttcatcccct cccgtgcgcc gctggattta ttcatgcggg accgcaagcg cggcgtccag
     4261 ttgtacgtga agcgcgtgtt catcatggac gactgcgaag cgctcatgcc tgagtacctg
     4321 cgcttcatca agggtgtggt ggacgcgcaa gatctgtccc tcaacgtgtc acgagaaacg
     4381 cttcagcagg atcgccagat tcagatgatg cgccggcgct tggtcaagaa agtgctgtca
     4441 acggtgaagg gcatggccac cggcaacgtc gatcagtaca agacgttctg gaaggaattc
     4501 ggccgcgccg tcaaggaagg actcatcagc gacttcgaaa atcgcgatac gatcctcgaa
     4561 atttcatcat tcgcatcaac gcatgacgag gagcagctga ccacccttcg cgaatacctc
     4621 gaacgcatga aggagggaca agagcacatc tactacatga cgggcgagtc gcgcctgatc
     4681 atcgagaact cgccgcacat ggaagccttc cgagccaagg gcttcgaagt attgctcctg
     4741 accgatccag tcgacgagat gtgggtcgat tcggtccgcg aattcgaggg caagcggctc
     4801 cagtcggttg ccaagggtca ggtcgacctc gacaccgagg aggagaagaa gaccaccgag
     4861 tccgaacgtg aacggcagaa tgaggagttc gccgctctcc tgtcctggct gacgaccaca
     4921 ttgcaagcgg acgtgaaaga ggtgcggctg tcctcgcgcc tcaccacctc gccggcctgc
     4981 atcgtcggag actcgcacga cgtgacacca accctggaga agatgtatcg cgccatgggt
     5041 caaggcatgc cgcccatcaa gcgcatcctc gaactcaatc ccacgcaccc cctggtgagc
     5101 gaactacaga aagcccacac cgagggtgca gacaacgcca ggctggcgga aacggctgag
     5161 ctgctctacg gcatggcgct cctcgccgag ggcggcgaat tgagtgatcc gtcccgtttc
     5221 atccgcctac tggcggatcg cctggcacag acgctggaga aatagttcac ctcgcccggg
     5281 gcccggcagg tgcgggcccc gggcggtcct tcggctgcgc cgttgacgca tgcgccgcgg
     5341 tgtgcgggag cccagggatg cggctctgat gtcgctgtgc gtaaggtatg aagccgtaga
     5401 gtgacggcga cagagacgtg gtaatcgcac acggtgctct cagctgcgga aacgcttcag
     5461 cggaggtgac gacgtggacc ctggacggca gcgcttatcc cagcgccgca aagccgccgc
     5521 gttcacccaa ggatcgcgca cggatctcct ggcacccgaa ctgtccaccg tcatccgacc
     5581 ggaaaccgcg ggtaccgaac cactcccgcc ggcacggcgg aacgtggcca gtgccccacc
     5641 ggtgtcgatg gatcaactcg ccgacctgtt caccgaaaag accgatgcga cgcgccccac
     5701 gggagccgcg agacccgagt ttcccgagtc gacgcaggct cagcgcccgt accggccatc
     5761 tccggccgtt acccccgcaa gatcgtggcg gttgaagcgg ttcccggcag ctggtcttct
     5821 cgccgcggcg ctcgccggag gcgcagcgtc ggtactcatg ggccctcccc atcgtgttcc
     5881 cgtcccggag gattccgccg ggaccccgtc gctcacggcc ccggtggtcg cggtcccggc
     5941 acccgacccg gtcgccggca ccagctcgcc caccaaggac gccatgggcg ctcgccaacc
     6001 tgcacccgcc accgaaccgg ataaagcagc cgatagcgcc acctcgtcac ggacgaacgc
     6061 ggtgccaagt cgtcctgaag tc
//
LOCUS       DASVXZ010000023         2318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1168075, whole genome shotgun sequence.
ACCESSION   DASVXZ010000023 DASVXZ010000000
VERSION     DASVXZ010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168075"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(571..1389)
                     /gene="thiD"
                     /locus_tag="VF788_00400"
     CDS             complement(571..1389)
                     /gene="thiD"
                     /locus_tag="VF788_00400"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEX8932667.1"
                     /translation="MTVAPPVALTIAGSDSGGGAGLQADLRTFTTCGVHGCVAVTAVT
                     VQNSLGVTGIVEIPPSTVADQIRAVATDIGVAAAKTGMLASAPIMSAVAEVCDEVGIG
                     ASVPLVIDPVAASMHGDPLLTGDALAALRTRLLPRATLVTPNLDEVRLLVGIEVRSRA
                     QQHEAACALHALGPQWVLVKGGHLHDDPECLDLLYDGDQFTPFTAPRQATPHTHGSGD
                     TLAAAITAALARGAAIPEAVGYGKHYVEQAVAHAYPLGAGIGPVSPFWHLSSGG"
     gene            complement(1386..>2318)
                     /gene="thiC"
                     /locus_tag="VF788_00405"
     CDS             complement(1386..>2318)
                     /gene="thiC"
                     /locus_tag="VF788_00405"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEX8932668.1"
                     /translation="DYMTVHAGVLLRYIPLTVRRVTGIVSRGGSIMAAWCLAHHRESF
                     LYENFAELCEILRRYDVTFSLGDGLRPGSIADANDEAQLAELKTLGELTQIARRHDVQ
                     VMIEGPGHVPMHKIVENVRLEEEWCDEAPFYTLGPLATDIAPAYDHITSAIGAAMIAQ
                     AGTAMLCYVTPKEHLGLPDRDDVKTGVITYKIAAHSADLAKGHPGAQAWDDALSTARF
                     EFRWHDQFALALDPDTARSYHDETLPAEPAKTAHFCSMCGPKFCSMRISADVRAYAAE
                     HGLSTVEAIETGMKEKSDEFTAAGGKVYLPVAGT"
BASE COUNT          395 a          740 c          780 g          403 t
ORIGIN      
        1 aatctgacca gcatgacgaa cagacgcgcc agtcggcggt tttgggccgg cggtcggccc
       61 aggcaggccc agcttcgacc tcaactgcgt gttttcggac tcaatcctat cgttctgact
      121 cttcagttgg tcgaactggc cttgcaggga tgaggtcggt gttcttgttg gcggctaccg
      181 cctgtgcctg ctccttggct tgggttactt tggccgtctg gtaaccgagg aatgcagtcc
      241 caagggcgaa ggtagcagct agaacagtca aagcttctca gtcacggtcc gcctgcggga
      301 accggtatca gtacgtcgcg tcatctcagc ctcggtagcg cctggcggca gggcgccgct
      361 gggcggcgtg atccgtatgt cgacaaggtg gcacagtccg tcacaccttg tgagctcacg
      421 gtccgaggag aaccgcgtta agataaccat tagtaccgtc aggcgatgag ctgaattacg
      481 cagaccgaag ccggcgtgag aacaggcgcc agcagtcaag gtgccctaat aatagatttc
      541 gctccgtggg gagtggcgga cccggccgag tcagccgccg gagcttaggt gccagaatgg
      601 agaaacgggg cctatcccgg cgccaagagg gtaggcgtgg gctaccgcct gttcgacgta
      661 gtgcttgccg tacccgaccg cctccgggat cgcggcgcca cgagccagcg cggcggtgat
      721 cgcagcggcg agggtatcgc cgctgccgtg ggtgtggggg gtggcctgcc ggggagcggt
      781 gaacggggtg aattggtcgc cgtcgtagag cagatccagg cattcggggt cgtcgtgcag
      841 gtggccgcct ttgaccagca cccactgcgg ccccagtgcg tgtaacgcgc aggcagcctc
      901 gtgttgctgg gcccgggacc ggacctcgat gccgaccagt agccgcacct cgtccagatt
      961 cggggtcacc agggtggcgc ggggcagcaa ccgcgtgcgc agcgcggcca gcgcgtcgcc
     1021 ggtcagcagt ggatcgccgt gcatggaggc ggccaccggg tcgatcacca atggcaccga
     1081 tgcaccgatg ccgacctcgt cgcacacctc ggccactgcc gacatgatcg gcgcgctggc
     1141 cagcatgccc gtcttggcgg cggccacccc gatgtcagtt gccaccgccc ggatctgatc
     1201 ggccacagtg gacggcggga tctccacgat accggtcaca cccagcgagt tctgcactgt
     1261 caccgcggtc actgcgacgc acccgtgcac gccacaggtc gtgaacgtgc gcaggtcggc
     1321 ctgcaggccg gcaccacccc cggaatccga tcctgcgatg gtcagcgcga ccgggggtgc
     1381 cacagtcatg tccccgctac gggcagatag accttcccac cggctgcggt gaactcgtcg
     1441 gatttctcct tcatcccggt ctcgatagcc tccacagtag acagaccgtg ctcagcggca
     1501 taggcacgga cgtcggcgga gatacgcatc gagcagaact tgggtccgca catcgagcag
     1561 aagtgcgcgg ttttcgcggg ctccgctggc agcgtctcgt cgtggtagga ccgtgcggtg
     1621 tccgggtcca gcgccagcgc gaactggtcg tgccagcgga attcgaaccg tgccgtcgac
     1681 agcgcgtcgt cccaggcctg cgcgcccgga tgacccttgg ccagatcggc gctgtgcgcg
     1741 gcgatcttgt aagtgatcac accggtcttc acgtcgtcac ggtcgggcag gccgaggtgc
     1801 tccttgggcg tgacgtagca cagcatcgcg gtgcccgcct gggcgatcat cgccgcgccg
     1861 atcgccgagg tgatgtggtc ataggcgggt gcgatgtccg tcgccagtgg gcccaaggtg
     1921 taaaacggcg cctcgtcaca ccactcctcc tccaggcgca cgttctcgac gatcttgtgc
     1981 atcggcacat gcccaggacc ctcgatcatc acctgcacgt cgtggcgccg agcgatctgg
     2041 gtcagttccc cgagcgtctt gagctcggcg agttgtgcct cgtcattggc gtcggcgatg
     2101 gaacccgggc gcaggccatc accgagggag aaggtgacgt catagcggcg caggatctcg
     2161 cacagctcgg cgaagttctc gtacaggaac gactcgcggt ggtgcgccag gcaccaggcc
     2221 gccatgattg agccgccacg agagacgatg ccggtcaccc ggcgcaccgt cagcgggatg
     2281 tagcgcagca acacaccggc gtgcacggtc atgtagtc
//
LOCUS       DASVXZ010000024         1839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_92817, whole genome shotgun sequence.
ACCESSION   DASVXZ010000024 DASVXZ010000000
VERSION     DASVXZ010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92817"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VF788_00410"
     CDS             <1..331
                     /locus_tag="VF788_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX8932669.1"
                     /translation="TSDQVAMVGIGLALAAGALWPTWARVRANEDGVEVRNLLGPRTV
                     PWELVLRVSFPDGAPWARLELPDDEYIAVMAIQSADGRHAVQSIRDLRAIHAEHAPPR
                     NPPSRDR"
     gene            complement(1066..1138)
                     /locus_tag="VF788_00415"
     tRNA            complement(1066..1138)
                     /locus_tag="VF788_00415"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1103..1105),aa:Leu,seq:tag)
     gene            complement(1183..1656)
                     /gene="bcp"
                     /locus_tag="VF788_00420"
     CDS             complement(1183..1656)
                     /gene="bcp"
                     /locus_tag="VF788_00420"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEX8932670.1"
                     /translation="MTDNVRLSPGDTAPEFTLPDADGKPVSLSDYRGSSVVIYFYPAA
                     STPGCTKQACDFRDNLAELETAGFAVLGISPDPPAKLARFRNEQGLTFPLLSDVDRSV
                     LTAYGAYGEKQLYGRTVTGVIRSTFVIDPQGRIDKALFNVRAAGHVAKLRKDLGV"
     gene            1753..>1839
                     /locus_tag="VF788_00425"
     CDS             1753..>1839
                     /locus_tag="VF788_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3618 domain-containing protein"
                     /protein_id="HEX8932671.1"
                     /translation="MARDPDTIERDIDQARDALAATLQEIGTR"
BASE COUNT          329 a          551 c          636 g          323 t
ORIGIN      
        1 cacctccgac caggtggcga tggtcggcat cggcctggcg ctggccgccg gagcgctctg
       61 gccgacgtgg gcccgggtcc gggccaacga ggacggcgtg gaggtgcgca acctgctcgg
      121 cccccgtacg gtgccctggg agctggtgct ccgagtgtcc tttcccgacg gggcgccgtg
      181 ggctcgcctc gagctacccg acgacgaata catcgcagtc atggcaattc agtccgccga
      241 cggccgacac gcggtgcaat ccatccgaga cctgcgcgcg atacacgctg agcacgcccc
      301 gccacgaaat cccccgagcc gagaccggta aatccggttg tcatcggctt tgaatccagc
      361 agccgcgtga tgatctgcat cacggccgcg ctgatccacg acgacaggac cgcgcgctgt
      421 gcctcagcgc ggtggtccgg atgcagccag aagcgggcac cgcaccccaa tcgcccagac
      481 gctgaaattc aatccccgct ggatctggtg ttggtctggt ggtcgaaaga gtgagggtca
      541 agagggggat gttggctggg ttggccccgc cggtcctaaa gttgtgatcc tatgttctgg
      601 ctgactggag tgcgcgttcc tcaaatgtgg gcggagtcca cgcgatccgc gttgttgctg
      661 gtcagtcgct tgtcagcaga ggtgcaagtc cgggacgggt cggaggcggg cggggcgagt
      721 aggggtataa ggcggtcccg tcacgcccgg cactgggcaa cgtatgcgct gttaaaccag
      781 tttttggtgg ggttaccgcg tagcctcgct cgaccagtac ctagtgcgag gtgatacggt
      841 ttacccaaag ttaatcgaga ggtgagatag acgtatttca gccgtttttc gctaggttca
      901 tgaaatgccc cgggacttat ggagttctga tccttccggc tggaacgggg cagacccgca
      961 cgccgcgatt gaggccgcaa ggtaatcgga aagacccgct gctgaagata atcatggctg
     1021 agccgagagg acctagtcat catgggaccg acgaagatgg ttcggtgccg gcggcgggat
     1081 tcgaacccac actggcgggt tcctaagacc cgtgcctctg ccgttgggct acgccggctt
     1141 gcctggtggt gaccgcacca gggatggaca caggatagga cgtcagactc cgaggtcttt
     1201 gcgcagcttg gcgacgtggc ctgcggcgcg gacattgaag agcgccttgt cgatgcggcc
     1261 ctgcgggtcg atcacgaagg tggatcggat gacgccggtg accgtgcggc cgtacaactg
     1321 cttctcgccg taggcgccgt aggcggtgag caccgatcgg tccacatcgg acagcagtgg
     1381 gaaggtcaga ccctgttcgt tgcggaacct cgccagcttg gccggcgggt ctggggagat
     1441 gccgaggacc gcgaatccag ccgtctccag ctcggcgagg ttgtcacgga agtcgcaggc
     1501 ctgcttggtg cagccggggg tgctcgcggc gggataaaag tagatcacca cagagctgcc
     1561 tcggtagtcc gacagcgaga ctggcttgcc atcggcgtcg ggcagggtga actccggggc
     1621 ggtgtcaccg ggggagagcc ggacattgtc ggtcacgaga tcgcaccgta ccggccgccg
     1681 gatggggtgg tttcgccacc tggacccacc gtggctacgg tgtgcgcacg cacacccgcg
     1741 cgaggaggac tcatggcccg cgaccccgac accatcgaac gcgacatcga ccaagcccgc
     1801 gatgcgctcg ccgcgacgct ccaggaaatc ggtaccagg
//
LOCUS       DASVXZ010000025         4747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_809900, whole genome shotgun sequence.
ACCESSION   DASVXZ010000025 DASVXZ010000000
VERSION     DASVXZ010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_809900"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            573..1337
                     /locus_tag="VF788_00430"
     CDS             573..1337
                     /locus_tag="VF788_00430"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8932672.1"
                     /translation="MPLLSVITAVHSGRQEYLREAAVTVLDQELPEEWEMEWLVQEDF
                     DEPEMEGLVEQIAERDARVRYAANRTTLGPGGTRNLALWRARGDLVRTFDSDDLLLPG
                     AIGHSLEVFGEHPDVHWSAGRTENLRLDGTRDPYLASPLPYGYVAPGVLNRVMAETGL
                     CPIHCAGLTMRISTLRAVGGWVGLPVGEDVSMISPIAEIFPGWHDSAVTWLYRRHPGQ
                     ITNEMPYDFWRSLGETAAEQRLTGLREILSNCRPRK"
     gene            complement(1345..2196)
                     /locus_tag="VF788_00435"
     CDS             complement(1345..2196)
                     /locus_tag="VF788_00435"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEX8932673.1"
                     /translation="MSLVTAVHSGRERYLFETAKSVLEQRLPVEWDLEWLVQEDSEEP
                     ELQGLVEKFAAGDQRVRYEVNGAVLGPGGTRTLALQRARGELIRTLDSDDLLLPGGLA
                     VQIAPFVARSDIQWSVTQLDELMPDKGRVPYASALPFGLVSPGSLNLLMAEYGVCPVH
                     CAGLMVRVDVIRAFGGWMGLPAGEDVGLLAAISEIFFGWHDPTITWLYRHHHDQMTRA
                     FTRPFWRTLGETSGVQRSAAIKRLGLTVASASKHTAGSCSTATFAEAEQHCDHYHVSL
                     RATSRGQ"
     gene            complement(4010..4381)
                     /locus_tag="VF788_00440"
     CDS             complement(4010..4381)
                     /locus_tag="VF788_00440"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8932674.1"
                     /translation="MKFLLRDRDCRYTRAFDAVFAADGIQILTSPRVPRANAICERMI
                     GTLRRELLDKILIVNERHLQPILAVYRHHFNTVRPHRTLAELTPVQAETQPSQVINLT
                     DYQIRRRSILDGLTSEYQISA"
     gene            complement(4378..>4747)
                     /locus_tag="VF788_00445"
     CDS             complement(4378..>4747)
                     /locus_tag="VF788_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8932675.1"
                     /translation="IRMAAENPTWGHRRVQGGLVRLGHRITASTVWRILHEAGIDPAP
                     RRLGPTWRQFLASQFQAVLAVDFLHVDTVFLRRPYGLIAVAHGSCKGYLLGVAAHPSG
                     PWTTQAACNLLMVSVTVPPA"
BASE COUNT          983 a         1448 c         1388 g          928 t
ORIGIN      
        1 aacatcaaca acaatcatga agatcacatc tgggaaccgg aagccacacc cgtcaacccg
       61 cgaatgatca aggctagccg tcgtcctcga cccgaaccac cggattccag cagcgtttac
      121 cgaactcgcg tccgccatct gaacagcaca gaggccgccg tcgaccgtgc ccaccttccg
      181 ctaacgcaac agcgccccgt ggcgacaccg ccgctgcgag gggccctcgc tagctgctcg
      241 accggtcgcc cgatcggttc aagctggaca ccgtaacggc gtgtcgacag ccaccaacat
      301 gagtttatcg ccatccgcct cagcgcctcg cccgccggtg aacacctcgt acgagtccac
      361 aggtagcttc ccgggagtat caaccgtgcg tgcctgcggg gggattttaa ggtgctccgg
      421 ggacggcagc gagggtagcg tcggcgccga ggtggtgatg atcgtggctg cggtgggcgg
      481 gagcgcatcc ggataggggg catgatgcgc gcagtgctga cattgtgaat tctgaataac
      541 tgggcttgta gattatcgac cgtggagggc ccatgccatt attgagcgtg ataacagcgg
      601 ttcattcagg ccgtcaggag tatttgaggg aggctgctgt cacggtgcta gaccaagagc
      661 ttcccgagga gtgggagatg gagtggctgg tacaagaaga tttcgatgaa ccagagatgg
      721 agggccttgt cgagcagatc gccgaacgtg atgctagagt gcgatacgcg gctaaccgga
      781 caacgttagg gcctggcggc actcgcaatc ttgcgttgtg gcgagcacgt ggcgatctgg
      841 tccgcacctt tgatagcgat gacctgcttt tgccaggagc gatcggtcac tctcttgaag
      901 tattcgggga gcatcccgat gttcactggt cggccggtcg aacggaaaac ttgagattgg
      961 atggtacccg cgatccttac cttgcgtcac ctctgccata tgggtatgtg gcgccaggtg
     1021 tcctcaaccg ggtgatggca gaaactggct tgtgtccgat acactgcgct ggcctaacga
     1081 tgcgcatcag cacccttcga gcggtcggag gatgggtcgg gttacctgtt ggagaagatg
     1141 tcagcatgat ctcgccgata gccgagattt tccccggctg gcatgattct gcggtcacgt
     1201 ggttgtaccg gcggcatcca ggtcagatca ccaatgagat gccatacgat ttctggcgtt
     1261 ccctcggtga gacggcagca gagcaacgcc tcacaggatt acgagagatt ttatccaact
     1321 gccggcctcg aaaataagac gggttcactg acctcgtgaa gtagcacgca gggagacatg
     1381 gtagtggtca cagtgttgct cagcttcggc gaatgtcgcc gttgaacagg atccggcggt
     1441 gtgcttggat gcgctcgcca ccgttagacc aagtcgctta attgccgccg agcgttgtac
     1501 accgctagtt tcacccaagg ttcgccagaa cggacgcgta aaagctcgag tcatctgatc
     1561 atgatggtgt cggtacagcc acgtgatcgt tgggtcatgc caaccaaaga atatctccga
     1621 aattgctgcg agtagcccga cgtcttctcc tgccggcaaa cccatccagc caccgaatgc
     1681 acgtataacg tcaactcgta ccataagacc cgcacagtgc acgggacata caccatattc
     1741 agccataaga agatttaatg aacctggcga cacaagacca aagggaagcg ccgatgcata
     1801 cggtacccta cccttatccg gcatcagttc atcaagttga gtcactgacc attgaatatc
     1861 ggagcgcgcg acaaacgggg ctatctgaac cgccagaccc cccggcaaaa gcaaatcgtc
     1921 gctatccagc gtgcgaatta actctcccct cgctctctga agagcaagag ttcgggtccc
     1981 accgggcccc agcactgcac cattaacttc ataccgtact cgttgatccc ccgcggcaaa
     2041 cttctccacc agaccttgca gctcgggctc ctcgctatct tcttgaacta gccattcaag
     2101 atcccactcg accggcagcc tttgctccaa cacacttttt gccgtctcga acaggtaacg
     2161 ctcacgccca ctgtgtactg cggtgaccag actcacaaga cttcgcgaag acatgtccag
     2221 cccgatctgt cctaattgtc cggtagaatg tgctcccgtc cggcgacatc aatcagcacc
     2281 cataggtaag agaacacgca tcacccggta gtacgtcatg ccccgcccca atcgtgtgaa
     2341 ctcgtggcaa gggacggatc cggcggcacc gcccggatcg ctcagtcggc gccctggccg
     2401 ccgctgcatc gacactcaac ggtccagcgt cgccgtactg cggcgcagct caccgcaacc
     2461 aacccatacc gcctatgtca caccgctcgc cgtcggtatg ggttggttgc ggtgaggtag
     2521 ttgtgaccaa actccgccag gtcagcctcc atgccgaagt agcaggtgtg catacgaacc
     2581 caccagccat caggcaaaac acgatctaca aaacactggg tatcgcagta ggggcagtag
     2641 gggcccatgt cactagcccg cctcatctag ccgtggccac atgccgcgtg atgtctgata
     2701 gacgtgttca caagctccga ggttgctgtc catgccactc ccatccgcac cagatcccag
     2761 aaaagtgtcc aggtttactc accagcggcg gcatcgaagg cagccgcggt gaccagcgcc
     2821 gctgctgccg cctccatgca gtcactgatc gtgatcccat gctgtacacc cccacagagt
     2881 gggtctcctg gctgactgat acctcttccc ccggcaaccg gccatggcga accacgccgc
     2941 accgcccgtg tcaacttcgg gcatcgttgc cgtacccaac accccggcct gctatcggtc
     3001 accgtcgccg accgtgaccg actgacgctg acattcccta ccgtccattc gatcacgtcg
     3061 cggtagaaca ccgtccggat gagatcaggt cacggtgccc cctcgcgcgc agctcatcga
     3121 ccagcaccga tgcccagcac cgacatcgat caccagatca ctggggcatt gttgatcaca
     3181 gtcatgaggc gtcgactggc ggcctctcgc tcaggtgctt gagcgagttc atccaacacc
     3241 gccgcgacac gaacctgcga tgcagcgccc acggcgaggt catcatcgcc acgctgctgt
     3301 gcccttctaa taatctatcg acccgctccg tgcggattgt gcacgcaacc gaacgagcgt
     3361 cgaccttatg aatggttgga ccagagtgcc ggctggtgtc ggcggagtcc gaaggtgacc
     3421 gaggtgttgc cgttgctgta cctgcacggg ctgtcgagta gcgacttcgt gcccgcgctg
     3481 ggccagtccc tgggttctgc gccgggctgt cgtcctcagg ccactgcgtc caaacgtgcc
     3541 ataaccagac gggggatatc cctgcgttgc cgtatctgac aggcctctgt cgggctcgtc
     3601 acatatagcc gaggtttaga agcctcggtg ccgtcatgac gatacggaag tcatcatgga
     3661 acacggttgg aaacattggc tgggtgtttt cgcagctgcg acggtcctca ctggtgggct
     3721 agcttcgatc ttccatcgcg acaacgcaac agcgccccag cgacagtccg cgggctgcag
     3781 cggtgcgtgt ccctgcggga ccatctgaag cgcgcaggaa ccgttgagat ctggcgcgcg
     3841 ccccgacaag atcgtggctg gagaacgtgc gtaacgcgca caccaatact gccacggggc
     3901 cgggggacaa tcgcgggcgg ctacagaatt cagcgcggcg ggcttaatct gtgggactca
     3961 aatatagaat cctgggtttg acgtgcaggt ttcagctgcc tgtgttgggt catgcggaga
     4021 tctggtactc gctggtgagt ccgtcgagga tcgatctgcg gcgaatctga tagtcggtga
     4081 ggttgatcac ttgtgagggc tgggtttcgg cctggaccgg tgtgagttcc gcaagcgtcc
     4141 ggtgcggtcg cacggtattg aagtggtgcc ggtagacggc gaggatcggt tgtaagtgtc
     4201 gttcgttgac gatcagaatc ttgtcgagca gctcccggcg cagcgttccg atcatccgtt
     4261 cacagatcgc gttcgccctc ggcactcgcg gactggtgag gatctggatg ccatcagcgg
     4321 cgaagaccgc atcgaacgcc ctggtgtacc ggcagtcacg gtcccggagc aggaacttca
     4381 cgctggtggc acggttaccg agaccatcag caggttgcaa gcagcctgcg ttgtccacgg
     4441 accgctcggg tgcgcggcca ctccgagtag atatcccttg caggaaccat gcgccacggc
     4501 gatcagccca tagggtcgtc tgaggaacac ggtgtccacg tgcaaaaaat ccacggcaag
     4561 gacggcctgg aactggctgg cgaggaattg acgccaggtc ggacctaacc ggcgcggcgc
     4621 ggggtcgatg ccagcctcgt ggaggatccg ccacaccgtg gaggcggtga tgcgatggcc
     4681 gagccggacc agtccaccct gtacccgccg gtgaccccag gtgggattct cagcagccat
     4741 gcggata
//
LOCUS       DASVXZ010000026         2000 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_92867, whole genome shotgun sequence.
ACCESSION   DASVXZ010000026 DASVXZ010000000
VERSION     DASVXZ010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92867"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..1305)
                     /locus_tag="VF788_00450"
     CDS             complement(139..1305)
                     /locus_tag="VF788_00450"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8932676.1"
                     /translation="MTVAHGKDTRPVAMLAEIVDAVIGVDTHRDFHQVEIAYPSGAMI
                     ATRSFSNDSTGHAETLAWVFEHAPGPRLVLSIEGTRSYGAGLARAAATAGLPVIEAEQ
                     PRRTHRRGRGKSDSIDAHLAVLYAVGLDAAKLPTPRCDGDREALRILLCARQELTTTT
                     TGQTNRLRALLRDGDDTDRQLARARLTDTVLASVARRRLPAHASRQQAVRQGEIRRLA
                     LALRDAGRALTTNRAELAAIVHDLVPGLLSQPGIGPVSAAQAIVSFSHAGRCRSDAAF
                     AKLAGTSPIEASSGQTTRHRLNRDGDRALNKALHVIATTRMRDDPATQAYLARRRKQG
                     KSDREIRRCLIGELSGAAARRSSRDSLGGARGWPRCRATSMASLSTATPGIPRP"
     gene            complement(1202..1963)
                     /locus_tag="VF788_00455"
     CDS             complement(1202..1963)
                     /locus_tag="VF788_00455"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8932677.1"
                     /translation="MTTNPDGRWTTQQIRNLVMDLGDRVTEFRFLVRDRAGQFAASFD
                     AVLADVGIQVVRIPPRCPRANCFAERFVGTIRAELTDHMLIFSERHLRVVLKRYVRHY
                     NGRRPHRARNLRPPRPTHPVADLSKERIKRRSILHGLICECVVAVLLGGGPPGSAPVT
                     LRDSGLIWPLRRALSLTCPWWLPAPAWPTSWPDLEACPPEGVTPHRSAAVVTAPRPVP
                     TVDRCPREGHPASGHVGRNRGCSHRGGHPPRLPSG"
BASE COUNT          330 a          628 c          709 g          333 t
ORIGIN      
        1 gtgctggccc agtcccaacc gacaaacttc acgatctggt ctctccttgg agtggatggt
       61 ggactccacg gtgttgagac cctgctgccg gatcctcatt gttcggccct caccggggca
      121 tgtccctcat gccgatcatc agggcctcgg gataccaggg gtggccgtac tcaaactggc
      181 catcgaagtg gcacggcagc ggggccatcc cctggcacca ccgagggaat cacggctcga
      241 tcttcgagcc gcagccccag atagttcccc aatgaggcag cggcggatct cgcggtcgct
      301 tttgccctgt ttgcgccgac gcgcgaggta ggcctgggtc gcggggtcgt cgcgcatccg
      361 cgtggtggcg atgacgtgga gggctttgtt gagcgcccgg tccccatccc gattgagccg
      421 gtggcgggtg gtctggccgc tggaggcctc gatcggactg gtgcccgcga gcttggcgaa
      481 ggcggcatcg ctgcgacagc gtccagcgtg ggaaaacgac acgatggctt gggcggcgct
      541 gaccgggccg atcccgggtt gactgagcag cccagggact aggtcgtgga caatcgcggc
      601 cagctcggcg cggttggtgg tcagcgcccg gccggcgtcg cgcagcgcga gggccaggcg
      661 gcggatctcg ccctggcgca cggcctgctg gcggctggcg tgggcaggca ggcggcggcg
      721 agccacgctg gctaagacgg tgtcggtcag ccgcgctcgg gccagctggc ggtcggtgtc
      781 gtcgccgtcg cgcagcagcg cgcgcaaccg gttggtctgc ccagtggtcg tggtggtcaa
      841 ctcctgacgg gcgcacagca agatccgcaa cgcctcgcgg tctccgtcac agcggggcgt
      901 gggcagcttg gcggcgtcga gaccgaccgc gtagagcacc gccaggtgcg cgtcgatcga
      961 gtcggattta cctcgacccc ggcggtgtgt gcgacggggt tgttcggctt cgatcacggg
     1021 caacccggcg gtggctgccg cgcgggctag gccagcgccg tagctgcggg tgccctcgat
     1081 cgagagcacc agtctcggcc cgggggcatg ctcgaagacc caggccagtg tctcggcatg
     1141 gccggtgctg tcgttgctga acgagcgggt cgcgatcatc gcgccgctcg ggtaggcgat
     1201 ctcaacctga tggaagtctc ggtgggtgtc caccccgatg actgcatcca cgatttctgc
     1261 caacatggcc actggccggg tgtccttccc gtgggcaacg gtcaaccgtt ggcaccggcc
     1321 tgggtgcggt caccacagcg gcagatctgt gaggggtcac gccctcgggc ggacaggctt
     1381 ctaaatcagg ccaactggtg ggccaggccg gtgccggcaa ccaccacgga caggtcaacg
     1441 acagggcacg ccgaagcggc cagatcaagc ctgagtcacg tagggtcacc ggcgccgagc
     1501 ctggcggtcc tccacccagg agtaccgcaa cgacacactc acagatcaag ccatgcagaa
     1561 tcgatcgacg cttgatgcgc tctttgctga ggtctgccac tgggtgggtc ggtcgaggtg
     1621 gacgaaggtt acgggcacgg tgaggacgtc gaccgttgta gtggcgaaca taccgtttaa
     1681 gcacaacccg cagatgccgc tcactgaaga tcaacatgtg gtcggtgagt tcggctcgga
     1741 tggtgccgac gaaccgttcg gcgaaacagt tcgcccgcgg gcaccgggga ggaatcctga
     1801 ccacctggat gcccacatcg gccaggacag catcgaacga cgctgcaaac tggccggccc
     1861 gatcgcggac gaggaaccgg aattccgtga cgcgatcgcc aagatccatc accaggttgc
     1921 ggatctgctg ggtagtccat cggccatcgg ggttggtggt catgcccagc agatgcaccg
     1981 agcgggtggg gacctccaac
//
LOCUS       DASVXZ010000027         2611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1435981, whole genome shotgun sequence.
ACCESSION   DASVXZ010000027 DASVXZ010000000
VERSION     DASVXZ010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435981"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..1520)
                     /locus_tag="VF788_00460"
     CDS             complement(147..1520)
                     /locus_tag="VF788_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004562786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HEX8932678.1"
                     /translation="MAVRYLERSRIVAPPGWSRWLVPPAALSIHLAIGQVYAWSVFKK
                     PLEASLGISGVASALPFTVGIVMLGLSAALFGTKVDRRGPRWAMFISMCCFSSGFLIS
                     ALGVSTRQYWLVVLGYGVVGGIGLGIGYISPVSTLIKWFPDRPGLATGIAIMGFGGGA
                     LIASPWSTSMLTAFGATGAHPDPGGIAKTFLIHGVGYAVFMSMGWLLIRVPAEDWKPR
                     GWESTSQPSGWLITASDVSARNAIRTPQFWLLWVVLCFNVTAGIGILERAAPIYADFF
                     PGGAGVTAAAAGFVAILSLANMLGRFIWSSTSDVLGRKNIYRMYLGVGALLYLAVTLT
                     TNANRVVFLLCCMLILSFYGAGFATVPAYLRDLFGTYQVGAIHGRLLTAWSTAGVLGP
                     MIVNAIADNRIAAGVTGPGRYTPSFSIMVGLLVIGFICNEFIRPVHPRFHELASAQGS
                     GKVGMAA"
     gene            1680..>2611
                     /locus_tag="VF788_00465"
     CDS             1680..>2611
                     /locus_tag="VF788_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8932679.1"
                     /translation="MRRVAIASCVGTAVEFYDFYIYGTAAALVFPKVFFPALGSTAGT
                     VASFATFAVAFVARPVGAVSFGHYGDRLGRKRTLILTLLLMGVSTMLIGLLPGAATIG
                     VTAPVLLVVLRFTQGFAVGGEWAGATLLTAEYAPAGQRGRYGMFPQLGATIALALSSA
                     TFLIIGLTLGNTDRSFLDYGWRIPFLVSIVLVGVGLYVRLKIEETPVFREAQRRHPAA
                     QAPLREAFTQAPREILLAAGATTIMFALFYTGTTYLTSYGTSPAGAGLSRTLVLSLGI
                     VAAVSMATGIIASAIASDRFGRRALIMLSCEAAAV"
BASE COUNT          507 a          857 c          825 g          422 t
ORIGIN      
        1 gccgccgaat aaggcgggga tcttgaccag tagccagtac agaccataga ggaagggcaa
       61 gatcacccac gcccaggcca acacgacgag caccacacgc ccactcgacg tcgatccggt
      121 cgaacccgac ccttctacca cagcactcac gccgccatcc ccacctttcc cgacccctgc
      181 gctgacgcca gctcgtggaa cctcgggtgc accgggcgga tgaactcatt gcagatgaaa
      241 ccgatgacca acaatccgac catgatcgag aacgatggcg tgtagcggcc cgggcccgtc
      301 actccggctg caatgcggtt gtccgcgatc gcattgacga tcatcgggcc gagcaccccg
      361 gcggtcgacc aggcggtaag cagccgaccg tggatcgcgc ccacctggta agtaccgaac
      421 aggtcacgga gataagcggg cacggtggcg aatccggcgc cgtaaaacga caggatcagc
      481 atgcagcaca acaggaacac caccctgttg gcgttcgtgg tgagcgtcac ggccaggtaa
      541 agcagcgcgc cgacacccag gtacatccgg tagatgttct tgcggccgag cacgtccgag
      601 gtcgatgacc agatgaaacg gccgagcatg ttggccaggg acaagatcgc gacaaagccc
      661 gccgcagcgg cggtgacccc cgctccgcca gggaagaaat cggcgtaaat cggggccgcg
      721 cgctccagga tgccgatgcc cgctgtcacg ttgaagcaca gcaccaccca caacagccag
      781 aactgcgggg tcctgatcgc gttgcgagcc gacacgtcgc tggcagtgat caaccagccc
      841 gagggctgcg aggtggactc ccaaccgcgc ggtttccagt cctcggccgg cacccggatg
      901 agcagccagc ccatcgacat aaagaccgcg taccccacac catggatcaa gaatgtctta
      961 gcgatgccgc cagggtccgg gtgcgctccg gtcgcgccga acgcggtcag cattgaagtc
     1021 gaccatggcg aagcgatcag cgccccgcca ccgaaaccca tgatcgcgat gccggtggcc
     1081 aggcctggcc ggtcgggaaa ccacttgatc agcgtggaga ccggggagat gtacccgatg
     1141 cccaggccga tcccgcccac gacgccgtac ccgagaacga ccagccagta ctgcctagtc
     1201 gacactccca gagcggagat gaggaatccg ctgctgaaac aacacatcga gatgaacatg
     1261 gcccagcggg ggccgcggcg gtcgaccttg gtaccgaaca gcgccgccga aaggccaagc
     1321 atcacgatcc ccaccgtgaa tggcagcgcg ctggcgactc cggagatgcc aagtgacgcc
     1381 tccagcggtt tcttgaaaac actccacgcg tagacctgac caatcgcgag atggatggac
     1441 agcgcggccg gcgggaccag ccaacggctc cagcccggcg gcgcgacgat ccgtgaacgc
     1501 tcgaggtatc tgaccgccac tggtagctct cctctctgtg aatgccacag acgctaccga
     1561 taggagcggc ttcccggcgt ggtgatactt gtttcacctt ggtcagacgg ctgatgcgcg
     1621 acggggacct gaggaaacgg atgatgagtg cagaacggac agccgcatcc agcccagaga
     1681 tgcgccgcgt ggcgatcgcc agttgtgtag gaaccgctgt cgagttctac gatttctata
     1741 tctacggcac agctgcggcg ctcgtgttcc cgaaggtgtt cttcccggca ttaggttcca
     1801 cagccggcac cgtagcgtca ttcgccacgt tcgcggtggc attcgttgcc cgacccgtcg
     1861 gggcggtgag cttcggacac tacggcgacc ggctcgggcg caagcggaca ttgatcctca
     1921 cgctgttgct gatgggtgtc tcgaccatgc tgatcggcct gctaccgggg gccgccacga
     1981 tcggggtcac cgctccggtc cttctggtcg tgctccggtt cacacagggg ttcgcagtgg
     2041 gcggggaatg ggctggcgcc accttgctca ccgcggaata tgcgcccgcg gggcagcggg
     2101 gccggtatgg gatgttccct cagctggggg cgacgatcgc gctcgcgctg tccagtgcga
     2161 cgttcctgat catcggtctc accctgggta ataccgatcg gtctttcctc gactacgggt
     2221 ggcggatccc gttcctggtc agcatcgtgt tggtcggagt ggggctgtat gtccggctga
     2281 agatcgagga gacgccagtg ttccgggaag cccaacgccg gcatccggcg gcccaggccc
     2341 cgctgcggga ggcattcacc caggcgccgc gggaaattct gctcgccgcc ggagccacta
     2401 cgatcatgtt cgccttgttc tacaccggca cgacctacct gaccagctac ggcaccagtc
     2461 ctgccggcgc cggactgtcc cgaacgctgg tgttgtccct ggggatagtg gccgcggtct
     2521 cgatggcgac gggcatcatc gcctccgcta tcgcctctga tcggttcggg cggcgggcgc
     2581 tgatcatgct gtcctgcgaa gctgcggcgg t
//
LOCUS       DASVXZ010000028         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_630816, whole genome shotgun sequence.
ACCESSION   DASVXZ010000028 DASVXZ010000000
VERSION     DASVXZ010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630816"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..638)
                     /locus_tag="VF788_00470"
                     /pseudo
     CDS             complement(93..638)
                     /locus_tag="VF788_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
BASE COUNT          372 a          632 c          618 g          354 t
ORIGIN      
        1 cacactcaaa cccggcccgg ggacggcaca cgccgatact cacagatgct ttgacgaggg
       61 ggacgcaagc gtcaccgtcg atttgcgcta gatcagacgg cgagcgccag ctcggcgaac
      121 gcagtcgtga gccgatgccg agggtcaacg tcggtggcaa gttcgtagtg gccgcggcga
      181 acgttctgga caaaggcatg gccgacgctg atcacccgta cggaacggac tgtttgagcc
      241 gcgcatcggc cgtggccggg ccttcaaccg cccatgatca gtttcaacag gattgttcgc
      301 atatcgctcc atgacatgac acgctgaggg cagcaactca tcgagtaccc gcgagtaagc
      361 cggcgcccga tcagtgctca cctcgacggg gcgtgagccg tcgttgaggg cacaggtaaa
      421 gaaatggcga gtggccgcca gatcccgctt ctcggatacg aggacatcga tgacctggcc
      481 atactggtca atcgcctgat acaaatagac ccatcgccca gcgactttga cataggtctc
      541 atcgacaaac caccgatcac ccgacgcgtg cctgcagggc cgggccgcat caaccagcag
      601 cggggtgaac cgctgcaccc accgtagacc gtgacatggg tcaagcctgg tcatatactg
      661 cgatgtgacc tggcaagacc gatccaaatc gcatttccca gggccagcac agcgctgtcg
      721 tgctcgaagg ctctactccc cgttacgggg agagcggtgc tcgcttgctg gcacagttgg
      781 tggtccccgg acgccggggc tctatctgac cccgctcggt agagggggcc ctctacccca
      841 gtagaccctc cgagtaacgg gcctgacctg catggtagcg gggtaggacc cgtagtcgac
      901 gctgccgtca caacccttct acggcgctcc gaggagctgt gcggtgttgt cacacggtga
      961 gggagcgagg ttcggcgttg agcggatgcg ttccgcgacg aaccattccg gctggctcgg
     1021 tcaccgaaag tcacagggac cccatcaggg aggcagggag ttctccctgc ccgggtccct
     1081 gccttgcctc cccgccccga gctgcacaga tactgatcag ggacgcagct ccctgcactt
     1141 gcgttcgcct cggaaacccc cgttttccgg tcgaggcgac accacggcgc gcctccctcc
     1201 tcattgttcg tccgtactct caattacctt acgtaactgg cggttgatgg agggtagcga
     1261 gaagctgcgt tccgccgacg tgctccagca gttcgagcgc ggagtcgaga gacggagtgt
     1321 caatgggtag ggtgtcgcgc tccccgctga catcaccacc gctctcgcca tgcgaccgcc
     1381 ccagaatctg gggcgatccg ggtgaggcac accttgaggc actatcgctc tgggtgaggc
     1441 acatgcctca cccctcagtc aggcacctgc cctagccctg ggctgccgcg aggctgacaa
     1501 cctcggcgag gcagaccggg cactgaccca ccgaatcagg tcggttttag tgagtcgggc
     1561 agggtgctcg cacctgcctc gccccgacca aacggtcgcg ggcgatggtg tcagtgcccg
     1621 agaagcggct gaacaaggtg gtgttggtcc cgccgcccaa cccagatgga gtgctcggat
     1681 tccggcttct gcctcgtcgg gccgagctgt gagcgtacga tcacaggcgc tgtcgaggtc
     1741 ggcaccctgc agctcccgtg cggtggaatg atcggcgtct gagtgcggcc ggacccgata
     1801 cccgaagtca gcgacaagat ccgcgacgtc cgcacacaga tgccgagaga cttgaaccgg
     1861 ctggatcgtg tggggctcga aactccatgc agcgtcttga cctgcgctcg tcgggtgctg
     1921 gtgggtcatg gatcatcatc ggatgctgct gctgccgaca ctcacagatc ttgtat
//
LOCUS       DASVXZ010000029         4002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1615279, whole genome shotgun sequence.
ACCESSION   DASVXZ010000029 DASVXZ010000000
VERSION     DASVXZ010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4002
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1615279"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..153
                     /locus_tag="VF788_00475"
     CDS             <1..153
                     /locus_tag="VF788_00475"
                     /inference="COORDINATES: protein motif:HMM:NF014895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HEX8932680.1"
                     /translation="KLGVCGERGGDPASVHFFHDNRFDYVSCSVFRVPTARLEAGRAT
                     VLEQVA"
     gene            complement(685..1032)
                     /locus_tag="VF788_00480"
     CDS             complement(685..1032)
                     /locus_tag="VF788_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEX8932681.1"
                     /translation="MTRTSRLLARIGIAAAAVTIPLALATSAQAGPSHQDPWDRVAQC
                     ESGGNWSTNTGNGYYGGLQFSPGTWQSFGGGAYAGTANHATRAQQIAIAEKVLHAQGW
                     KAWPTCSKKAGVN"
     gene            3662..>4002
                     /locus_tag="VF788_00485"
     CDS             3662..>4002
                     /locus_tag="VF788_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932682.1"
                     /translation="MNHWSVGFEWLGVITSGLSIPVAALVGLSSMVAGLAVGHLVGGF
                     ITPSSSPFLAVGGTAIDLTPIWLKDFAVRTFGSYDNVVGHGGDDRVDRGHCRTVVPAL
                     PHAWADAVCGTR"
BASE COUNT          684 a         1170 c         1271 g          877 t
ORIGIN      
        1 aagctcggtg tctgtggcga gcgcgggggc gatccggctt cggtgcactt cttccacgac
       61 aacaggttcg attacgtgtc ctgctcggtg ttccgcgtac cgaccgcgag gttggaagcc
      121 ggtcgggcga cagtccttga acaggtggcc taactacaat ggtaacgacg tcgtggtaat
      181 cgatggactt ttccctttgt atcggggaca tcagacgaat ggcacaggca acatggagga
      241 tccgttgccc tgagtcgctg tatagagcgg gaacccattc gagcacgaac attgaccgat
      301 ggctgcgttg agctgtcacc aggtggtgac agctcaacgc ttccttggca acctcgacgg
      361 cggtcgcctg gttgggctga ttgacttcga gcacgtcgta ccgataccgg tcgccgcaga
      421 tgccgagtca gcgccgcgtg cctagtcagc cagtaacgcc cgataacgag cacatcgccc
      481 gcgaaatcta tcggatcatc atctccccac ccgaaacaca gccgtcagct gcttgacatc
      541 catcaaagca tcagtcctca tcgagatagt tggtgctctt cgctgtgacc ttggtgcggt
      601 tcggaatgaa ctgcactggt cggcttgcgg aagctctgcc ccggccgggt gctgcggcgg
      661 ggacgagtgt gcggtggggt ggtgtcagtt gactccggcc tttttggagc aagttggcca
      721 ggccttccag ccctgcgcgt ggagcacctt ctcggcgatg gcgatttgct gcgcccgggt
      781 ggcgtggttg gcggtgcctg cgtaggctcc tccaccgaat gactgccagg ttccgggact
      841 gaactgcagc ccgccgtaat atccgttgcc agtgttggtg ctccagttac cgccgctttc
      901 acactgtgcc acgcgatccc acggatcctg gtgcgacggg ccggcctgag ccgatgtcgc
      961 cagtgccagt ggaatcgtca cagcggctgc ggcgataccg atacgtgcga gcaatcggga
     1021 agtcctcgtc atcagctatt ctccatgaaa cgcgcacgcg gctagtgacc ttagaaatcg
     1081 tgtgggattc ggatcccgtg tcgatgatgg tcagcctgcg gccctgtccc aatctgagtg
     1141 tggttgcgat atccggtcct gagggacagg gctttgcgcg ccaggccgga ttcctacacc
     1201 aaggtggctc cttcgggtag gacgatattg accgtacgga tcattttgcg taacgcaaga
     1261 ggtagtcgcg gggtcactcc cgataggagt acggttgccg catcgtcact caacgcaata
     1321 agggttgacg tttctccagg tcagacagca ccgtcactac cctgcgtagg cactatttgt
     1381 cgggtatctg agctgcccgc gtaacgaacg gaccacccat ttggcgcaca acgcgtgggc
     1441 ctttttttcg ccgttttgtc acccctgttc gtgacggctg cgtggatgca cggtctaacg
     1501 ggtgggacgg tggtgatcat tatgggcaac ttccgagtca ccctgctgcg ggtgacgtgg
     1561 gtctgttact tgcttgacga cacccgtcga tgaaggcatg acttcgaatg agccatcatg
     1621 gcgtcgccgg tcacacttgc gcaattgcac atcccgatga acccccaact ggatcgaggt
     1681 cgcccgcgct gcctgagccg ccgacaccgt tgctgactgt tggtcgcttc tcaagatagt
     1741 ttcgaatgcg tatcggtctc cttgctcgac cgtggatccc atcccgacgc cggccacgac
     1801 gtcacgttcg tcgccgcgcg aggcgggtcg gccgctgttg atcgccgccg agtgtcgcga
     1861 accggccgag caggacctac cgcgaatacc agcggcgttc acggctgcac accagccgcc
     1921 agggtgttag cgacctcgat gacgtgagcc tggtgatcaa cattgtggga cgcgacttct
     1981 ccactatgta cccgcgtttg cccgtggacc ggtactcggc cgggtttgta gatccccgct
     2041 gggggtcgtc ctaccaacgg gccgggtcgc caccaatgat ggccgtgatg gtggtgagaa
     2101 attgttgcac gagttgacgc tgggtggcga cgagctcgtc gacgacctga cgctgagccc
     2161 tgagcacctt ctcgaacagg tcgtgggcga ctgaatcatc atcgcgcggg cgggggagcg
     2221 cagcgcggtg gagctaagct gccgggccag gtcgcccaca cctgcagcga ccggagcgag
     2281 gtgtcctgcc cgtggcgcac gagctggatc atcaagtcct gcgtccgctg gatcgtgctg
     2341 tccgtggcgg cggcccgttg gccgtctttg attgagcggg catgtcttgg cgctcccggt
     2401 tttgggggat actggatatg ccttccgttt attaccgtcc tcggcctcgg agcgaggcgc
     2461 agcactattc agaacaaatc ggggtaacct gaagaatacc ccccaccgag ccggcatcat
     2521 tgtcgtggat caacccggcg aggtcttcta tcccgtcgca ttgccgcgcg ccgaccacgg
     2581 atgcgccacg aggcggcctc aagggtctcg tttggtccgc cgcagctcag cggcctcacg
     2641 cgtcaggcgc ttgatcgtgc catgatcccc gttgctcacc tcgccccccg gaccagagtt
     2701 gacttcggcc cgacacaccc acggcgcacc gtgtccccat cccgaccaac ttctccgcga
     2761 cggcctcgat cgcgacggcg accatctaga ccgcgcgctc acgccgcgtc gaataattcc
     2821 atcctcccat ggccacgacc ccatcacctt tcaatagatg gaccttcaga tacgcctagg
     2881 gattcatggg cgcatttggg tcgtgttggg tggtggtcct gcgcttgcag atgtagcgcg
     2941 gttggaaggg atgtcgatga gggcttgatg ctcccgagag ctagctggcc aagggccttg
     3001 agtcacgtgc cgacgactgg ccgcacggtg ttggaaggtg gcggtggggc cacgttcccg
     3061 cggtgagacc gtcacgattg ggtctcggac tgaaccgtct gccggtgggg atcgaaagca
     3121 cagtgatgac gtcgtcctga ttttcatttc ggtggtagct ctttttggcc tggcgcgtct
     3181 tcctgagcca taaggttttg ggaaagaaaa tagtagacga gtggcggatg aaaatctcgg
     3241 atgtattttc acttggtggt tgtggcggcc gcggttacgg cggcagtaat tacgaccgtt
     3301 ccggcggtta cggcagttct aaacgccact atcgccatgg tgactactac agacgctcct
     3361 acggcggcca cgatggtcgg cactacgatc gtcacgtcgg tggcggactt ctagggatcc
     3421 ttgggggata ctaaattcgc aagtgattga cggtggcctt cactcctgtc aggagtgaag
     3481 gcgtcactca attttgcacg gcgcgtcagc gacgtggatg cggatccggt gctccgagcc
     3541 gagaacggcg accggttccg gtgatcctgc tcgacgggcg tgagcatggc ttctggagag
     3601 tagagaagca gcgtttacga gccacgttga ccgtaagtcc catcacggtt tggtctcttt
     3661 ggtgaaccac tggtcggtgg gtttcgaatg gctgggtgtg attacgtccg ggctgtccat
     3721 tccagtagcg gccttggtcg gcctgtcgtc gatggtcgcg gggttggcgg tggggcactt
     3781 ggtgggcggg ttcataacgc cgagttcctc gccgttcctt gcggtaggcg gcactgcgat
     3841 agacctcacc ccgatttggc tcaaggactt cgcggtccgc accttcggca gctacgacaa
     3901 cgttgttggg catggcggtg atgatcgggt tgatcggggt cactgccgga ctgttgtccc
     3961 ggcgctcccg cacgcctggg ctgatgctgt ttgtggtact cg
//
LOCUS       DASVXZ010000030         2043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_272465, whole genome shotgun sequence.
ACCESSION   DASVXZ010000030 DASVXZ010000000
VERSION     DASVXZ010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272465"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..913)
                     /locus_tag="VF788_00490"
     CDS             complement(158..913)
                     /locus_tag="VF788_00490"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8932683.1"
                     /translation="MDQLGPVGAAIIECLDIADDQQHLDIATGTGKPRLTVAELAPRG
                     HVVLTDLACGVLDIATRRANAQGITNFETKVCSADDLPFGDATFDSISVRFGYMFFPD
                     VAKATTEFARVLKPGGRLCSSVWVKPEENPWTTIAMQAIATEAVLAPPDPDGPNMFRC
                     AAPGYVSALYEAAGLRDVAEWNVEVELMTRSPAQYWEMISEHVSLAVAALQQVDEPAR
                     DRIAKAVIATVSTYEEDGKVKIPGVARCIVGTK"
     gene            complement(1828..>2043)
                     /locus_tag="VF788_00495"
     CDS             complement(1828..>2043)
                     /locus_tag="VF788_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016334559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEX8932684.1"
                     /translation="SFDYYENSENPNEFAIIEIFADSDAGSAHVATEHAQNFFPFMSR
                     VISEKPKINYQDLAGEAWSEMAEVSPE"
BASE COUNT          408 a          690 c          580 g          365 t
ORIGIN      
        1 ccccacaaac acaccaccga acaacacacc gcagccaccc tgacttgact cagagcactc
       61 aaacgctacc tcgcccgcga aatctatcgg atcatcacct gcccacccca aacacagccc
      121 tcagcccctt gacatccata agggcatcag tgcctcccta cttcgtgccg acgatgcagc
      181 gggccacgcc cggaatcttt accttgccgt cttcttcata ggtgctgacc gtggcgatga
      241 cggctttcgc gatccgatcc cgcgccggtt cgtcgacctg ctgaagcgcc gcaactgcga
      301 gcgagacgtg ctcgctgatc atctcccaat actgcgcggg cgatcgcgtc atgagttcga
      361 cctcgacgtt ccactcggca acgtcgcgca gcccggcggc ctcgtacagg gcactgacat
      421 atcccggggc agcgcaccgg aacatattcg gcccgtccgg gtcgggtggt gccagcaccg
      481 cctccgttgc gattgcctgc atggcgatcg tcgtccacgg gttttcctcg ggcttgaccc
      541 ataccgacga gcacagacgt ccgcccggct tgagcacgcg cgcgaactcg gtggtcgctt
      601 tggcgacgtc gggaaagaac atgtatccga accgtaccga gatactgtcg aacgtcgcgt
      661 caccgaatgg caggtcgtcg gcgctgcaca ccttggtctc aaaattggtg atcccttgcg
      721 cgttcgctcg tcgtgtcgcg atgtcgagca ccccacacgc aaggtcggtt agaacgacgt
      781 gtcccctcgg cgcgagctcg gcgacggtca gccgcggctt accagtgccc gtggcgatat
      841 cgagatgctg ctgatcatcg gcgatgtcga gacactcgat aatcgctgcg ccgacggggc
      901 ccagctgatc catgatgacc gagtcccact tctcccagcc cggagaaagc ccggcccgcg
      961 tcgctcgctg aacgtctcgg gttcatcgtg ctcggcatcg gccctcccgc tatcggatac
     1021 atccaccgaa cacgacggca ctccttggcg ggagtacaca atgcctgtag tgcgcgttat
     1081 ggcaagggca ctgttgcatt gagccaaagg gcgtcctcgt cacggctcaa agcagcaaag
     1141 caggcttcac aatccctgtg gaaaaccatg acaaccgggc gtccgagccc tgctgcggga
     1201 cgtctgggcg gggcagatga gaccaatccg agcgggctga tcactcatgc aacagcgcca
     1261 cgtggcgcac ttcaacgacc atcgtccgca ccgcgcgctg ggccaggcac accactgagg
     1321 tcaccaccac cgccggcgtc gccatctcag tgtcacctgc gacgtcgcga tcggctcggt
     1381 gggttgatac acgaatacgc ccgagtcgca tgacgtggat gctcaattcg gcacccacag
     1441 gcagccaact aggttggatg cgttgcaagc acagatcgca gaagacacga aacgggcagg
     1501 acgcctgcgg atgacgggcg accgggacgc accagatctg tagccaagga acagaccacg
     1561 gcagctaaac gtgcgggaca acgagatgtc atcacccact tatcggatca caaatcacgg
     1621 gaattgcagt agatgcatga actcccgaca ccggccgatc taagtgagtt cgcatgtcac
     1681 gcgcctgtct gcgtgccccg tatgagccga ggccacgggc cttcgattcc actgctcacc
     1741 ctcggccggc tgcagctccg ccatgtactc cccgatgggc acccagcggc ggtcttgcca
     1801 cgccttggcg atcaaggcga gccgccccta ctctgggctg acctcggcca tctccgacca
     1861 agcctcgccc gccagatcct gatagttaat cttcggcttc tcgctgatca cccgggacat
     1921 gaacgggaag aagttctgcg cgtgctcggt ggccacgtgc gctgagccgg cgtcggaatc
     1981 ggcgaagatc tcgatgatgg cgaactcgtt cggattctcc gagttctcgt agtagtcgaa
     2041 cga
//
LOCUS       DASVXZ010000031         5997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_362277, whole genome shotgun sequence.
ACCESSION   DASVXZ010000031 DASVXZ010000000
VERSION     DASVXZ010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5997
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362277"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            866..2260
                     /locus_tag="VF788_00500"
     CDS             866..2260
                     /locus_tag="VF788_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8932685.1"
                     /translation="MQVSSHHLEALRTVLAGKVITPEDADYDTARIQWNNDIDRRPVA
                     IARCLSPTDVSAALRFARDQELEISVRGGGHAFSGSGVCDGGLMIDLSAMRRVSISAD
                     ARLAQVDGGATVAELDAATQVHGLAVPAGVVSHTGIGGLTLGGGIGWLTHRAGLTIDN
                     LLSADVVLADGQYVHTSPDEHSDLFWAVRGGGGNFGVVTTFEFQLHPVGPEVQLGLFF
                     WGMDSGEQVLRLVRDVVPGLPADAGAQIAIGLNAPPAPFVPPRYHFTPGYLLIVVGFS
                     SPEEHSRLIAPIRDALPPLFELVTPMPYVALQRTLDETAPWGLLGYQEAIYLDELTDD
                     VISVIVDHTPAKRSPMSFCVVFRLDGAYSEVGDEETAFGGRRAPRYIVNITGIGATPE
                     ILRAERAWVRSVWNALRPFARDSGGYVNSMTDDDEDRVRASYGAAKYQRLARIKAKYD
                     PANVFRNNANIRPA"
     gene            2361..3017
                     /locus_tag="VF788_00505"
     CDS             2361..3017
                     /locus_tag="VF788_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEX8932686.1"
                     /translation="MSERRTRRARLAVAALVLLGAIVIVAVLPVPSPLQMRAWAQSVG
                     MVAPLLFLLGHALVTVAPVPRTVFTLTAGLLFGPVLGVTLSLTATMLSGVLAFGLVRW
                     LAGNLMLPRLDHKVLRTIDARLRRRGWLAVASMRLIPAVPFSVLNYCSALSSISFHHY
                     LAGTVGIVPGSVAVVLLGDALTGTTSPALLAVSLAGAAVGVIGLIVESRSPAPVPPVR
                     "
     gene            3161..4567
                     /locus_tag="VF788_00510"
     CDS             3161..4567
                     /locus_tag="VF788_00510"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX8932687.1"
                     /translation="MSTPADLTATQLVAAYRAGELSPVEATHDVLDRIDRLDRQVRAF
                     CLVDTDRALEAAKASEWRWQQGLPQGLVDGVPASIKDVYLTQGWPTLRGSRLVSADQE
                     WPFDGPAVARLREHGAVLLGKTTTSELAWKCVTDNPLTGVTVNPWDTSRTPGGSSGGS
                     AVAVALGMGPLSMGTDGGGAVRIPASFTGTVAIKPTYGRVPNWPASPLGTLTNAGPMA
                     RTVADTALLLDVVSGYDARDWSALPPTNRRYSDALGNGVLGLRIALSPDLGYVEVDPD
                     VADAVQTAAGVFVDLGAQVELADPGFDDCVQDFHVLWFTAVAKTVERLTPRERALMEP
                     ALQEVVEQGERCSALDYLAATAARTAMGTIMGAFHERYDLLLTPTVPITPFVAGEEVP
                     IGWHSERWTSWSPFTYPFNMTQQPAATVPCGWTSTGLPIGLQVVGPRHADDRVLAACA
                     AYEQVQGWDHRRPPLLPG"
     gene            complement(4571..5899)
                     /locus_tag="VF788_00515"
     CDS             complement(4571..5899)
                     /locus_tag="VF788_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEX8932688.1"
                     /translation="MSVALVVVLAVILLAIVVSVVKAVVVIEQASAAVVERLGRYRNT
                     LNPGLNFLVPFVDTIRDRIDLREQVVSFPPQSVITKDNLTVDIDTVVYFRVTNPKDAV
                     YEIRNYVEAVEQLATTTLRNVVGGMSLEDTLTSRDFINGQLSGVLDDATGRWGIRVSR
                     VELKAIDPPPSIQDSMEKQMRADREKRATILTAEGQRESAIKTAEGQKQAAILSAEGA
                     KQAAILTAEAERQSRILRAQGERAARYLQAQGQAKAIEKVFAAIKSGRPTPELLAYQY
                     LQTLPQMAQGDANKVWIVPSDFSKALEGFTRMLGTPGDDGVFRFEPSRDYVSADRPED
                     DDEAIAGWFDNPTDPNVAAALQAAKEVAHREVSQPAVGPTPSLAPAPGPPPSAQSDAA
                     QQDPPPKVPPTQAPGSANSMEPRASTSSSEDGDGSPKPPPDQGSAEPGRS"
BASE COUNT          993 a         1902 c         1951 g         1151 t
ORIGIN      
        1 agttctgctc gatctatgac cgctactcgt gtcatgagga gtggctgcgc gagcatgccc
       61 aaactcgaac cggtgactaa cctgctcggg cggcgaagcc gaaaaggcga ctgcctcccc
      121 aagggagtgg acggccctga gtcggacacc atctttagtg acggttgcca tagaccagct
      181 agttggagga ccgtttttct tgacccacgg gtgccctgaa tcaaagagtc ggctcagacg
      241 gtattggtag cagcgaccca agcattgagg accacctcac caccggagta ctgtataaac
      301 tcgcaggtcg gcgcgggtcc cgagcagcag atgggcacct gtgtgccgta ggtacccgtt
      361 atgtggaatc tacgtcggcc gtgccggtga ctacgtattc gaaaagtgtc gctgactagg
      421 tagctgacct ggacagagtt acgtgcagct actgattgcc catgcccgta agcctgggca
      481 gggtatgaga aactgaatgg gcaaatccac cgatgcggtg tttctgccct ggctaccgct
      541 ggcagcgctt cctaggagga tttgatggca ctgagccttg tggagatcga cagaccgcgc
      601 ctagagctgt tgccaacccg cgccatgctg tcgccgttgc gtggtggtca tgacgacagc
      661 ggcacgagcg gcgtcggcta ctgaacgatt ggcgtcttcg ccggcggcgc tggacaccgg
      721 aagacctacc gtcatatcgc cagaaatggg ctattgccga cgttctgtgg ttagtatcgg
      781 cagatctgcc cagatcccgg caaactactg acaatgcacc ggcgcgtgcc aggtgctcac
      841 tgccacgcct gggagctgtt tcatgatgca agtttcgtct catcatctgg aagcactccg
      901 cacggtgctg gccgggaaag tgatcacacc ggaggacgct gactatgaca ctgcgcgaat
      961 ccaatggaac aacgacatcg atcgccgtcc ggtagcgatt gcccgctgct tgtcaccaac
     1021 ggacgtttca gcggcgctgc gcttcgcccg agaccaggaa ttagagatct cggtgcgagg
     1081 cggggggcac gccttctccg ggtccggtgt ctgtgacggt gggctgatga tcgatctcag
     1141 cgcgatgcgt cgtgtctcca tcagcgccga tgcacgcctg gcgcaggtag acggtggcgc
     1201 caccgtggcg gaactggacg cggcaaccca ggtgcatggc ttggctgtgc ccgccggggt
     1261 ggtcagccac accgggatcg ggggcttgac actcggtggt ggtatcggct ggctcactca
     1321 ccgagcggga ttaactatcg acaatctgct ttcagccgat gtggtgctcg ctgatggaca
     1381 atacgtacac acctcgcccg acgagcattc tgacctattc tgggcggtcc gcggtggcgg
     1441 gggaaacttt ggcgttgtca cgacctttga gttccagctg cacccggtcg gccccgaggt
     1501 gcaactgggg ctcttttttt ggggaatgga cagcggagag caggtactgc ggctggtccg
     1561 cgacgttgtg cccgggctac ctgccgacgc tggcgcccag atcgctatcg ggctcaatgc
     1621 gccgccagca ccattcgtac ccccgcggta ccacttcacc ccaggctacc tgctcatagt
     1681 ggtcggcttc tcatcccccg aggaacactc tcggcttatc gcaccgattc gcgatgcgct
     1741 gccgccgttg ttcgagctag tcaccccgat gccgtatgtc gccctgcagc ggacactcga
     1801 tgagaccgcg ccgtgggggc ttctcggtta ccaagaggcg atctacctcg acgagctcac
     1861 cgacgatgtg atctcggtga tcgtggacca cacacctgct aagcgttccc cgatgagttt
     1921 ctgcgtggtt ttccgcctgg acggagcgta ttcggaggtc ggcgatgagg agacggcttt
     1981 cggcgggcgg cgcgcaccgc gctacattgt caacatcact ggcatcggag ccaccccgga
     2041 gatcctgagg gcagagcgtg catgggtgcg atcggtgtgg aacgcgctgc ggcccttcgc
     2101 cagagactcc ggtgggtacg tgaactccat gaccgacgac gatgaagatc gggtgcgggc
     2161 atcatacggt gcggccaagt atcagcggct cgctcggatc aaggccaagt acgatccggc
     2221 caacgtcttc cgcaacaacg ccaacatcag acccgcctga cccaccgtca ccacgcgttc
     2281 tgaaaccgga ctcggtttct cgggcgggta ccgtgcgttc tcgggacgta ctctgcactt
     2341 acccgggagc ggaggcagct gtgagcgaaa ggcgcacgcg gcgtgctcgg ctggcggtag
     2401 cagcacttgt gctgctcgga gccatcgtca tcgttgcggt gctgccggtg cccagtccac
     2461 ttcagatgcg ggcctgggca cagtcggtcg gtatggttgc accactgttg ttcctgctcg
     2521 gacacgcgct cgtgaccgtt gccccggtcc cccgaacggt gttcaccctc accgccggtt
     2581 tgctgttcgg cccagtgctg ggagtgacgc tgtccttgac ggcgacaatg ctgtccgggg
     2641 tcctggcgtt cggcctggtg cgatggctgg ctggtaatct catgctgccc cgtctagatc
     2701 ataaggtgct ccgtacgata gacgcgcggt tgcgccgccg tggctggctc gcggtggcgt
     2761 caatgaggtt gatccccgcg gtgccattct cggtacttaa ctactgcagc gcgctctcgt
     2821 cgatctcatt ccaccactat ctggccggaa ccgtggggat cgtgcccggc tcagtagcgg
     2881 tggtgttgct cggcgatgca ctcaccggca cgacctctcc agcgttgctg gcggtgtcac
     2941 tagccggcgc tgcggtcggc gtgatcgggc tgatcgtcga gagccgctcc cctgccccgg
     3001 tccctccggt gcggtagcga cctgacctgc cagccgacgc tcgcgcgatc tgaccgcttc
     3061 gctcccgctc tgcgatactt ccgctgcagg acgtgggtgg gccagcgggg gtacgcaacc
     3121 caaaccggca gcagcgccgc cgccagacag ggagcacacc gtgagcacgc ccgccgacct
     3181 caccgccact caactcgtgg ccgcctaccg ggcgggtgaa ttatccccgg ttgaagccac
     3241 tcatgatgtg ctggaccgga tcgatcggct cgaccggcag gtgcgggcat tctgcctggt
     3301 ggacaccgat cgtgccctgg aggcggccaa ggcctccgag tggcggtggc agcaggggct
     3361 gccacagggc ttggtcgatg gtgtgccggc atcgatcaaa gacgtgtatc tcacacaggg
     3421 ctggcctacc ctgcgcggtt cgaggttggt ctccgcggac caggaatggc ccttcgacgg
     3481 gccggccgtc gcccggttgc gtgagcacgg cgcggtgctg ctgggtaaga cgaccacttc
     3541 tgagctggct tggaaatgcg tcaccgacaa cccgctcacc ggcgtcacgg tgaatccgtg
     3601 ggacaccagc cggacaccgg gtgggtcaag cggcggcagc gcagtggcgg tggcactggg
     3661 catgggacca ctgtcgatgg gcaccgacgg aggcggcgcg gttcgcattc ccgcctcctt
     3721 caccgggaca gtggcgatca agccaaccta cggtcgcgtg ccgaattggc cagccagccc
     3781 gttgggaacg ctgacgaacg ctggccccat ggcccggact gtggccgaca ccgccctgct
     3841 tctcgacgtc gtctccggtt acgacgccag agactggtcc gccctcccac cgacgaatcg
     3901 ccgctactct gatgcgttgg gtaacggcgt gctggggctg cggatcgcgc tgagccccga
     3961 cctgggttat gtcgaggtcg atccagatgt ggccgacgcc gtccagaccg ccgctggggt
     4021 atttgttgac ctcggcgcgc aggttgagct cgccgatccg ggtttcgacg actgcgtgca
     4081 ggatttccac gtcctctggt tcaccgccgt ggccaaaaca gtcgaacgct tgaccccccg
     4141 cgagcgcgcc ctcatggaac ctgccctgca ggaagtggtg gagcagggcg agcgctgctc
     4201 cgctctggat tacctcgccg ccaccgcggc gagaacggcg atgggtacca taatgggcgc
     4261 ctttcatgaa cgatacgact tgctgctcac tccgacggtc ccgatcacgc cattcgtcgc
     4321 cggcgaagaa gtgccgatcg gatggcactc ggagcgctgg acgagttgga gcccgttcac
     4381 ctatccgttc aacatgaccc agcagcctgc cgccacggtg ccgtgcggct ggaccagcac
     4441 gggcctgccg atcgggctgc aggtagtagg accgcgacac gctgacgatc gggtgcttgc
     4501 cgcatgcgcg gcctacgagc aggttcaggg ttgggaccat cggcggcccc cgttgctgcc
     4561 gggctgattg tcaggatcgg ccgggttccg ccgacccctg gtcgggcggt ggcttcgggg
     4621 acccgtcgcc gtcctcagat gagctggtgg aagccctcgg ctccatggag tttgccgatc
     4681 cgggtgcttg ggttggaggt accttcggag gcgggtcctg ctgcgcggcg tccgactggg
     4741 cgctgggcgg cggccctggc gcgggagcca gcgacggggt cggacccacc gctggctggg
     4801 atacctccct gtgggcgact tccttggcgg cctggagcgc ggccgccaca ttcggatcgg
     4861 tggggttgtc gaaccatccg gcgatagcct catcgtcgtc ttcgggtcgg tcggcggaca
     4921 cgtagtcccg gctcggttcg aaccggaaca ccccatcgtc accgggagtg ccgagcatcc
     4981 tggtgaaccc ctccagagcc ttgctgaagt cactgggcac gatccagacc ttgttcgcat
     5041 caccctgggc catctgcggc aaggtctgca agtactggta ggcgagcaac tcaggggtcg
     5101 gccgccctga cttgatcgca gcgaacacct tctcgatcgc tttcgcctgg ccctgcgcct
     5161 ggaggtaccg cgccgcccgc tccccctggg cacgcaggat gcgcgactgg cgctcggctt
     5221 cggcggtgag aatcgcggct tgcttggcac cctctgcgga caggatcgcg gcctgcttct
     5281 ggccctctgc ggtcttgatc gccgattcgc gctggccttc ggcggtgagg atggtggcgc
     5341 gcttctctcg gtcggcgcgc atctgcttct ccatcgagtc ctggatggac ggcggtggat
     5401 cgatcgcctt gagctccact cggctgaccc ggattcccca ccggccagtc gcgtcgtcga
     5461 gcaccccgga cagttggccg ttgatgaaat ctcgggacgt cagggtgtcc tccaggctca
     5521 tcccacccac gacgttacgc agcgtagtgg tagccagctg ttccactgcc tcgacatagt
     5581 tgcggatctc gtacaccgcg tctttcgggt tggtcacccg gaagtacacg acggtgtcga
     5641 tgtcgacggt cagattgtcc ttggtgatca ctgattgcgg gggaaaggag actacctgtt
     5701 cccgcaggtc gatgcggtcc cggatcgtgt cgacgaaggg aaccaaaaag ttcaggcccg
     5761 ggttcaaggt gttgcggtaa cgaccgagcc gctcgacgac cgcggcggac gcctgctcga
     5821 tcactacgac cgccttgaca accgagacga cgatcgccag caggatgacc gccaagacca
     5881 cgaccagggc aacgctcatg aaaactcccc cattacaacg gcagtagcac cggagatggt
     5941 catcaccgta acgcgctcgc cgggttccaa tacctgggtc tcgtcgtacg cgcgggc
//
LOCUS       DASVXZ010000032         3154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1077563, whole genome shotgun sequence.
ACCESSION   DASVXZ010000032 DASVXZ010000000
VERSION     DASVXZ010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1077563"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VF788_00520"
     CDS             complement(<1..319)
                     /locus_tag="VF788_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerial mycelium formation protein"
                     /protein_id="HEX8932689.1"
                     /translation="MIEVRPGGRRRIDRVLDPAYVADLAELGLGELRARRDDAAQEET
                     DLSYLRRLLHARIDIVRAEQRHRQEGGSAPVVTDLARILAENAVGPATGSGRHQTLLP
                     SQAE"
     gene            complement(410..1447)
                     /locus_tag="VF788_00525"
     CDS             complement(410..1447)
                     /locus_tag="VF788_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HEX8932690.1"
                     /translation="MTSPLLESSGAVPPPADSPDSGVAWHYGDPLGEQRAAERGAAVV
                     DRSNRKVIAVPGEDRLSWLHTITSQHLLALGDGEHTEALVLDLRGHVEHHAVVSHVRD
                     TVWLDTEPTRASELLAYLNSMVFWSKVAPRDATAELAVLSLLGPATDQVLARTGELGG
                     FVRAAPSRTDLLVPRNELTQAWQRLVEAGAVPAGSWAYEAIRVAALRPRLGIDTDERT
                     IPHEVGWIGPAVHLEKGCYRGQETVARVANLGRPPRRMVLLHLESPEKAPITGEPVKA
                     GERVVGRVGTVATHYELGPIALALLKRTVDPTTALSAGQAAASVDLDSIPPDSGEPPG
                     RAALRRLRANS"
     gene            complement(1444..1839)
                     /locus_tag="VF788_00530"
     CDS             complement(1444..1839)
                     /locus_tag="VF788_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEX8932691.1"
                     /translation="MRMTPQRQLVLDAVRELEHATPERICAHVQHVAPAVNITTIYRT
                     LDLLEGLDLVRHTHLGHGAPTYSTQAHEHVHLVCHRCGDVTEIPPAELVDLTERLRQR
                     FGFVLDPSHLALSGRCAEHADTAVQNNGS"
     gene            complement(2246..2875)
                     /locus_tag="VF788_00535"
     CDS             complement(2246..2875)
                     /locus_tag="VF788_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FABP family protein"
                     /protein_id="HEX8932692.1"
                     /translation="MTAPGGSSGDEALRIAAERAQSTGARNIPEFTDLPIPGDTANLR
                     EGPELHPNCLTLLPLVGVWRGEGEIVYPTIDGPYHFGQQVVFCHDGRPFLRYEARAWL
                     LDADGKVIRPAARETGFWRPQTDDTIEVLAAHGTGILELYYGRPRSQTSWELATDAVV
                     RSASAKEVTGAHRLYGIVEGGDLAYVEQRAMVGQSMQPHVSARLQRVIG"
     gene            complement(2942..>3154)
                     /locus_tag="VF788_00540"
     CDS             complement(2942..>3154)
                     /locus_tag="VF788_00540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932693.1"
                     /translation="TGRVAVPLGTPVIVSVTSDVGDEIHVHGYDRKAKVPPGATGSVA
                     FTASNAGVFEVELEGSKLQLLQLQVG"
BASE COUNT          499 a         1094 c         1051 g          510 t
ORIGIN      
        1 cttcggcctg cgaaggcagc agcgtctggt ggcggcccga gccggttgcc ggccccacgg
       61 cattctccgc cagaatccgc gccaggtcgg tcaccacggg agcgctgccc ccctcctgcc
      121 ggtgacgttg ctcggcgcgc acgatgtcga tccgggcgtg caacagccgg cgaaggtagg
      181 acaggtcggt ctcttcctgc gccgcatcat cccggcgcgc ccgcaactca cccagcccca
      241 gctccgccag gtcggcgacg tacgcggggt ccaacacccg gtcgatccgc cgacgcccac
      301 caggacgcac ctcgatcact ccaccatcct gcccctcagc cggttcggga tcctcccagg
      361 ccccccaacg ggacatctgc gcctagtgcg ccaatgattc aggccggtgt taagaatttg
      421 ctcgcaggcg ccgcagggct gcccggccgg ggggctcgcc gctgtcgggc gggatggagt
      481 caaggtcgac ggacgcagcg gcctgtcctg cggatagcgc agtggtggga tctaccgtgc
      541 gtttgagcag agctagggcg atggggccca gctcgtaatg ggtggctacc gtgcccaccc
      601 ggccgaccac tcgctcgccc gcctttaccg gttctccggt gatgggcgcc ttctccgggg
      661 actccaggtg cagtagcacc atccgcctcg gcgggcggcc cagattggcc acccgcgcga
      721 ccgtttcctg tccccggtag caccccttct ccaggtgcac agcgggaccg atccagccga
      781 cctcgtgcgg aatggtgcgt tcgtcagtgt cgatgcccag ccgcgggcgc agcgccgcga
      841 cgcggatggc ctcgtacgcc cagctcccgg ctggtacagc gccggcctcg acgagccgct
      901 gccaggcttg ggtgagttcg ttgcggggaa ccaggaggtc agtccggctc ggcgccgccc
      961 gcacgaaccc acccagttcc ccggtccgcg ccagcacctg gtcagttgcc ggacccagca
     1021 gggacagcac agccagttcc gccgttgcat ctcgcggcgc caccttcgac cagaacacca
     1081 tcgagttcag gtaggccagc agttccgacg cccgggtggg ttcggtgtcc agccacaccg
     1141 tgtcgcgaac atgggagacc accgcgtggt gctcgacgtg gcctcgcaga tccagcacca
     1201 gggcctcggt gtgctccccg tcacccagcg cgagcaaatg ctgcgaagtg atggtatgta
     1261 gccagctcag ccgatcctcg ccaggcacgg cgattacctt gcggttcgac cggtcgacca
     1321 cggccgcgcc gcgctcggcg gcgcgctgct cacctagcgg gtcgccgtag tgccaggcca
     1381 ccccggagtc tggagagtcc gcgggcgggg gcactgcacc cgaggactcc agcagagggg
     1441 aggtcacgag ccgttgttct gcaccgcggt gtcggcgtgc tctgcgcagc gcccggaaag
     1501 cgccaggtgg ctggggtcca gcacgaatcc gaaccgctgc cgcaatcgct cggtgaggtc
     1561 gacgagctct gcaggaggaa tctcggtgac gtctccgcag cggtggcaga ccaggtggac
     1621 gtgctcatgc gcctgggtgg agtaagtcgg cgcgccgtgc ccgaggtggg tgtgccgtac
     1681 caagtccaga ccttcgagca ggtcgagggt gcggtaaatg gtggtgatgt tgaccgcggg
     1741 tgcgacgtgt tgcacgtgcg cgcagatccg ttccggagtg gcatgttcca actcccgcac
     1801 cgcgtcgagc acgagctgcc gttgcggcgt catccgcatc ccgcgttcat gcagcgtgct
     1861 acgcaggctg gtgtccacac cacgatggta gcgccacgca gcgcatccga acacgcactc
     1921 ggtctgatca cccgtactgg atctgttgct cccaattgac gttgccgaac ccaccgcagc
     1981 gcggatagcg tgaaagcaca cgggaaagga ggtggtccaa ggttgaacgg ctataggact
     2041 cgtgaggtgg ctgtcagcta gagccgccga cggccgtgga aggccacctc cacctggacg
     2101 gcgttgacgt caacgccgta ctggagaggc ggtccgcgaa tccaaggcag tcacccggcc
     2161 cccggggaag ccccgagcac tagtcccgct cggaccatgc cgctctgcgg caccctcccc
     2221 gggggctgac tgctgttcgg gcgcctcagc caatcactcg ctgcagtcgg gcagagacgt
     2281 gtggctgcat ggattggccg accatcgcgc gttgctcgac gtaagcgagg tcgccgcctt
     2341 ccacgatgcc gtacaggcgg tgcgcaccgg tgacctcttt ggccgaggcg cttcgcacca
     2401 ccgcgtcggt ggccagctcc cacgacgtct gactgcgcgg acgcccgtag tacagctcca
     2461 agatgccggt cccgtgtgcg gcgagtacct cgatggtgtc atcggtctgg ggacgccaga
     2521 acccggtttc ccgggctgcc ggccggatta ccttgccgtc cgcatcgagc agccacgccc
     2581 gcgcttcgta gcgcaggaac ggtcgcccat cgtggcagaa caccacctgc tgaccgaagt
     2641 ggtagggccc gtcgatggtc gggtagacaa tctctccctc gccgcgccag acaccgacca
     2701 aaggcagcag cgtgaggcag ttcgggtgca actcggggcc ctcacgcagg ttggcggtgt
     2761 cgccgggaat cggtaggtcg gtgaactcgg ggatattccg ggcgccggtg ctctgcgcgc
     2821 gctcagcggc gatccgcagt gcctcgtcgc cgctggaccc gccgggagct gtcacgcccg
     2881 agatcatatg acccgtgagt ggcgatgcca gcccaggctg gcatcgccac tcacgggggc
     2941 cctagcccac ctgtagctgc agcaattgaa gcttggagcc ctccagctcc acctcgaaga
     3001 cgccggcgtt gctcgcggta aatgcgaccg acccagtggc gcctggtgga actttggcct
     3061 tgcgatcgta gccgtgcacg tggatctcat cgcccacatc gctggtcacc gacacgatga
     3121 ccggggtgcc caagggcact gcgacccggc cggt
//
LOCUS       DASVXZ010000033         3677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1527649, whole genome shotgun sequence.
ACCESSION   DASVXZ010000033 DASVXZ010000000
VERSION     DASVXZ010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1527649"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VF788_00545"
     CDS             complement(<1..525)
                     /locus_tag="VF788_00545"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8932694.1"
                     /translation="MRTVEVHHELTGSPDSPVLVLAGPLGSTLDIWQPQVDALAERFR
                     VLRYDHRGHGRSPVLHGGSYAVMDLALDALALLDRLSIERAAFCGLSLGGMVGIWLAA
                     HAPERLSSLVLCSTSARFDDHGPWVERAASVRFAGTGGIAADVVADWFTPDWAAAHPD
                     VVEQAIQMITKTTDD"
     gene            complement(570..645)
                     /locus_tag="VF788_00550"
     tRNA            complement(570..645)
                     /locus_tag="VF788_00550"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(610..612),aa:His,seq:gtg)
     gene            complement(699..1310)
                     /gene="orn"
                     /locus_tag="VF788_00555"
     CDS             complement(699..1310)
                     /gene="orn"
                     /locus_tag="VF788_00555"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HEX8932695.1"
                     /translation="MNNRLVWIDCEMTGLDLAKDALIEIAALVTDGDLRVLGEGVDVV
                     IHADDAALDSMPEVVREMHARSGLTDAVRGSTVSLAEAERQVLAYVRTWVPDTRSAPL
                     AGNSVATDRAFLARDMAELDAHLHYRMVDVSSIKELCRRWYPRVYYAQPAKGLAHRAL
                     ADIKESIRELMYYRHTVFVPAPGPSSEEAHAAARSVIGPIPDR"
     gene            complement(1410..2825)
                     /locus_tag="VF788_00560"
                     /pseudo
     CDS             complement(1410..2825)
                     /locus_tag="VF788_00560"
                     /inference="COORDINATES: protein motif:HMM:NF015648.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
     gene            complement(2822..3343)
                     /locus_tag="VF788_00565"
     CDS             complement(2822..3343)
                     /locus_tag="VF788_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020665098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX8932696.1"
                     /translation="MTAPGTQPATSEPLRLRPPRHRVSPRAITWWTTQAALEVAAVLA
                     PLAVAIVVWTEARPWLIPITVVVVVIGLGYLLVMPRWRFRVHRWETTDDAVYTSAGWI
                     NQEWRVAPMSRIQTVDTERGPLQQLFGLATVTVTTASAAGALRLAGLDHVVADDLVEQ
                     LTETTQATPGDAT"
     gene            complement(3340..>3677)
                     /locus_tag="VF788_00570"
     CDS             complement(3340..>3677)
                     /locus_tag="VF788_00570"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX8932697.1"
                     /translation="LTALGYDIGLITTDHAYYLREIATVSFDSPGSAELALAAAEAVA
                     GGVNALVLGHHGCSVLADSVELAHKRAVNLEEAARMTYAALLLARGQPVPRVPARFLE
                     AVGRNEAHI"
BASE COUNT          678 a         1299 c         1189 g          511 t
ORIGIN      
        1 gtcgtctgtt gtcttggtga tcatctggat tgcctgctcg acaacgtccg ggtgcgcggc
       61 tgcccagtcc ggggtgaacc agtcggcgac cacgtcggca gctattccgc ccgtgcctgc
      121 aaaccgaact gatgcagccc gctcaaccca cgggccgtgg tcatcgaaac gggcgctggt
      181 gctgcacagc acgagcgagg acagccgctc cggggcgtgt gcggcgagcc agatgccgac
      241 catcccgccc agcgagaggc cgcagaaggc agcacgctcg atactgagcc ggtctagcag
      301 tgctaatgca tcgagggcca ggtccatgac cgcgtaggag cccccgtgca ggaccggaga
      361 ccggccgtgc ccgcgatggt catagcgcag cacgcggaat cgctcggcca gcgcgtcgac
      421 ctgaggctgc cagatatcca gcgtggagcc caaaggcccg gcgagtacca ggaccggcga
      481 gtcgggagac cccgtgagct cgtgatggac ctcgacggtt ctcatgcgtg gaactctagt
      541 gcccgtgcat ccagcacgag ccgacaaaat ggggtgagtg acgggactcg aacccgcgac
      601 atcctggacc acaaccaggt gctctacctg ctgagctaca cccaccatgc gctggccctc
      661 gccaacagcg ctgaccatgg tagcgggtcg gctaacggtt accgatcggg tatcggcccg
      721 atgacggatc gagccgcagc gtgcgcttcc tcggagctgg ggcctggtgc gggcacgaac
      781 acggtgtgcc ggtagtacat cagttcgcgg atggattcct tgatatcggc cagtgcccgg
      841 tgcgccagtc ccttggccgg ctgcgcgtag tagacccgcg ggtaccagcg ccggcacagc
      901 tccttgatgg aggacacgtc aaccatccgg tagtgcaggt gcgcgtcgag ttctgccatg
      961 tcgcgggcca ggaatgcccg gtcggtggcc accgagttgc cagccagcgg cgccgagcgg
     1021 gtgtccggca cccacgtgcg gacataggcc agcacctgcc gttccgcctc ggccaggctc
     1081 acggtggacc ctcgtaccgc gtcggtcagg ccagagcgtg cgtgcatctc ccgcaccacc
     1141 tccggcatcg agtccagcgc ggcgtcatca gcatggatga ccacgtcgac accctcgccg
     1201 agcacccgca gatcaccatc ggtgaccagc gcggcaatct cgatcagcgc gtccttagcg
     1261 aggtccagcc ccgtcatctc gcagtcgatc cacaccagac ggttgttcac gctcgtcagc
     1321 ttagtgcgtg cggcgacgac cgcgtcatgc tgcagaaatg gcacgagcag tcccggtacc
     1381 gcccgctcgg cgatcgccag gccgtcggct acgggaacat cgatcacggg ataccccccg
     1441 tgaccagccg cggtggacgc ggtcacggtg accaggcctg cccaccgctg gaacaacgac
     1501 tgcgacaccg tccagccgat cactccggat cgctggaggg cgacggtgga gcgcgctcca
     1561 gcaccatacc gggtgacgag atagcggctc gtcaaagcat gtcctaggtt gcggtaggca
     1621 tccacggcga gcagcaccgt cacgggcagc aggcccagcg ctgcccaccc tgtccaggcc
     1681 ggcaccggag caacccacag ccccacggat cctgccagca ccggcagcgt cgcgcggacc
     1741 accctgcgcc gcagcgccac cggcggatgc ctgagcaatg ccgcagcggt gggggatgga
     1801 tactcgcaga gcaccgcccc cgacacccgg tgcgcctcgc tccttggggc gggtggcagc
     1861 aggatgcccc ggccatggcc acgacgacct cccaggccgg tcgccaccgc gacagtccgc
     1921 gccccacgcc cgacccgcag cagtggcggc tcgaccaccg cgatcccgcg cagccggcgc
     1981 tcctccagcg acaccgaccg ggtggtaagc agtcctcggc ggatccgcag ggtgccgccc
     2041 ggctcacgga ccagccgaaa cccccaccag gactccacaa agatcagcac cgagcccacc
     2101 agcgcgacca tcaacaccag catggccaag acagcgaggc ccagccacag cggggcggtg
     2161 gtcagcctct cgcggactcc gccgacatcc acggcatcag cgccgacatc gctgatgagt
     2221 tgcccaaacg tcccggcaac agcgcccaac gccaccaggc tggacgtcgt gagcggggcg
     2281 aaccgcagcc aggaccactt caacgcagcc aactcgttcg ctgcaggcgc aactgtgaca
     2341 ccgctgcttt ccacctgagc ggcatccgcg ggatccagca gccgctgacg aacccggtcg
     2401 gcctccacgg aagagatcgc atcgagagtc agttcgcgcg attcaccgct gtcggtacgc
     2461 tcgccggtcc cgatcttcac caccgacaac cggaacaacc ggtgcgccag gccggctgtg
     2521 acgtcaacgc tgcgaatccg gtcccgggga accgaccggg cgctgcggaa cagcaaacct
     2581 gaacgcagct cgacgcgatc gctggtgatc cggaagcgcg tggtgaacca ccgaagcatc
     2641 ccggcgagca gcacaatcag cacaccggtc agcagtccgt agagccgccc gccgagatcc
     2701 tgcccaatgc cgatcaccag caccaccacg atgaacggca gaaacccgac gagctggcgc
     2761 agcggagtca ccgcgagcat tcggggatcc aagcgctgcc agccgggctc ccgtggtgcg
     2821 gtcatgtggc gtccccagga gtcgcctggg tggtctcggt aagttgctcg acgaggtcat
     2881 cggccaccac atgatccagc cctgccaacc gcagcgctcc ggcagccgat gccgtggtca
     2941 cggtgaccgt ggctaacccg aacagctgct gcagcggccc gcgttcggtg tcgacggtct
     3001 ggatccggga catcggggca acccgccatt cctgattgat ccagcccgct gacgtgtaga
     3061 cggcatcatc ggtggtctcc cagcggtgca cccggaatcg ccaacgtggc atcaccagca
     3121 ggtagccaag accgatgacg accactacaa cggtgatggg gatcagccac ggccgtgctt
     3181 cggtccagac gacgatggcg accgccagcg gggccagcac agctgccacc tcaagcgcgg
     3241 cttgggtcgt ccaccaggtg atggcgcggg ggctcacccg atggcggggc gggcgtaatc
     3301 gcagtggctc gctggtagcg ggctgcgtac cgggagcagt catatgtggg cctcgttccg
     3361 gccgaccgct tccagaaagc gtgccgggac tcggggaacc ggttgtccgc gcgccagcag
     3421 cagcgcggcg taggtcatcc gtgcggcctc ctccaggttg accgcccgtt tgtgcgccag
     3481 ctcgaccgaa tcggccagca ccgagcagcc atgatggccg aggaccagag cgttgacccc
     3541 accggcgacg gcctccgcgg cggcgagggc aagctcagcg ctgccaggcg agtcgaacga
     3601 caccgtcgcg atctcccgca ggtagtacgc atggtcggtg gtgatcagtc cgatgtcgta
     3661 gccgagcgcg gtgagca
//
LOCUS       DASVXZ010000034         2890 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_183037, whole genome shotgun sequence.
ACCESSION   DASVXZ010000034 DASVXZ010000000
VERSION     DASVXZ010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183037"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..1012
                     /locus_tag="VF788_00575"
     CDS             122..1012
                     /locus_tag="VF788_00575"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8932698.1"
                     /translation="MTNSADSFDRQTYSLDAAETDHGPSDSSALYAPAQLLGLSVQYY
                     PAVGICVLVVEGELDLLTVPLLEQRLREQLVAKPAHLILDLESVRFLGCSGLSCLLDA
                     RELVEASGPQLHLAGLINRVIERAVGITGLVGLFSTYPTLMHAVIELANRAELTASDC
                     VTPAMVLTAIWCCSVGLTWTLELRQVDRDSGLGALVDWISSGVPVTQPVPDTLASELL
                     AARGLWLFRDAFPEPPSGSRHRIGYVSAEAELATLAHQVREEAAQAGVHPVMLAAWQT
                     AGFSTAAASGWIRAGCLFPK"
     gene            complement(1039..1665)
                     /locus_tag="VF788_00580"
     CDS             complement(1039..1665)
                     /locus_tag="VF788_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX8932699.1"
                     /translation="MFIASGEGRAMDITQLILDDHQEQRRLLATIEQIDPTNTAALGA
                     VWDRLASFLEVHAEAEEQLFYPELLRVGGGVDNVDPEAETKDAIGDHNDIRNAVAAVT
                     DHEVGSEGWYDAITKANEANSDHMAEEEREGLTDFRRHAGLELRHDLAVAFATFEATH
                     FAGVTAVDKDPEVYVREVEAEIATSDDGANDSPATTDTSLGIGSLHSD"
     gene            1910..2257
                     /locus_tag="VF788_00585"
     CDS             1910..2257
                     /locus_tag="VF788_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEX8932700.1"
                     /translation="MPMDAYRDGDQLIVQLDLPGIERDSIELDVENNVLTVKAHRPRQ
                     QIADSQWLASERLHGTFSCQLHLGNQLDIDNIGASYDKGVLTITVPVAQESKARRIEI
                     GGSQTSSAESAAS"
     gene            2360..>2890
                     /locus_tag="VF788_00590"
     CDS             2360..>2890
                     /locus_tag="VF788_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX8932701.1"
                     /translation="MRDQLRRVAEETFGWLQLRDEQLAAMEQVMAGHDVLAVLPTGAG
                     KSAIYQVPALLLHGPTLVVSPLIALQEDQLEGIADTRAPQAVAVNSAQRSGEQKQAWH
                     AIRQGKAEYLFLSPEQLANDDVVDALTDLRVSLFVVDEAHCVSAWGHDFRPDYLRLGP
                     VIQRLGHPPVIALTATA"
BASE COUNT          478 a          870 c          969 g          573 t
ORIGIN      
        1 ccccggtaac cggccgagat actccgctta gtttcggtcc agtgctgggg ggtaagtaga
       61 gtctgatggc gcaaacgagc cgggccacct ggtcgatgtg ggggctggga aggaatggcc
      121 tgtgacgaac tcggcggatt cgtttgaccg gcagacctac tcattggacg cagctgagac
      181 tgatcacgga ccgtcggaca gctcggcgtt gtacgctccc gcccagctgc tggggctcag
      241 tgtgcagtat tacccggctg tggggatctg cgtcctggta gtggagggcg aactagacct
      301 gttgaccgtg ccgctgctgg agcaacgcct gcgcgaacaa ctggtcgcca agccggcgca
      361 tttgattctg gatctggaat cagtgcgttt tctgggctgt agcgggctga gttgcctgct
      421 ggacgcccgc gaactcgtcg aggctagtgg gccgcagcta cacctggcgg gtttgatcaa
      481 ccgcgtgatc gagcgcgcgg tgggtatcac cggtttggtg ggactgttca gcacctatcc
      541 caccctcatg catgcggtga ttgaactggc gaaccgcgca gagctcaccg cgtcagactg
      601 tgtgacaccg gctatggtcc tgaccgcgat ctggtgctgc tcggtgggcc tcacctggac
      661 gctggaattg cgccaggtcg accgcgactc cggactgggc gcgcttgtgg actggatcag
      721 ctcaggcgtg cccgttaccc aaccggtgcc ggacacgctg gcctcggagc tgctcgccgc
      781 acgcgggctg tggttgttcc gggatgcgtt cccggaacct cctagcggca gtcggcatcg
      841 cattggctat gtgtctgccg aagccgaact ggcgacgctg gcccaccagg tgcgggagga
      901 ggcggcgcaa gctggggtgc acccggtgat gctggccgca tggcagacgg ccgggttttc
      961 cacggctgct gcttcaggtt ggatccgtgc gggatgcctc ttccccaagt gaccggtctc
     1021 ggcgtccggc attcccgatc aatcgctgtg aaggctgccg attcctagtg atgtgtccgt
     1081 cgtggcgggg ctgtcgttgg ctccgtcgtc ggacgtggcg atttctgctt cgacttcacg
     1141 aacgtagacc tcggggtcct tgtccactgc tgtgacaccg gcgaagtgcg tggcctcgaa
     1201 ggtggcgaaa gcgacggcca ggtcatggcg caactccagc ccggcgtggc ggcggaagtc
     1261 ggtcagtccc tcacgctctt cttcggccat gtggtcgctg ttggcctcgt tcgccttggt
     1321 gatcgcgtcg taccagccct cgctgcccac ctcatgatcg gtaactgcgg cgaccgcatt
     1381 gcggatatcg ttgtgatcac cgatcgcgtc tttggtctcc gcctccggat cgacgttgtc
     1441 gacgcctccg ccgacccgca gcaactctgg gtagaacaac tgctcctcag cctcggcgtg
     1501 cacctccagg aatgacgcga ggcggtccca gaccgccccc aaagcggcgg tgttggtggg
     1561 atcgatctgt tcgatggtcg cgagcaaccg gcgctgctcc tggtgatcat cgaggatcag
     1621 ctgggtgatg tccatggctc tcccctcacc gctggcgatg aacacgatgg tcccagcacg
     1681 ccggcagtat tccccgcaat ggcaagaacc aaccgccttt cgggaagttc acgcagccgg
     1741 cctgaccgtc gcgttaggac cgggtttaac cgggaacacc gttgctgtta gcgccgtgcc
     1801 ggcagcaatt gagagcagcg aggtgaactc gatgatcgtc gcatttgagc ccttagggcg
     1861 gcccgatcgc tccacacaca ctatgtcggg caccgctggg aagcggagca tgccgatgga
     1921 cgcataccgg gacggggatc agctgatcgt gcagcttgac ctgccgggca tcgaacgcga
     1981 ctcgatcgaa ctggacgtgg agaacaacgt cttgaccgtg aaggcacacc ggcccaggca
     2041 gcagatcgcg gactcacagt ggttggcgtc cgagcggctg cacggcacct tctcttgcca
     2101 actccatctg gggaatcagc tcgacatcga caacatcggc gccagctacg acaagggcgt
     2161 gttgacgatc actgttccgg tggcccagga atccaaggcg cgccggatcg agattggtgg
     2221 ctcgcagacc agtagcgccg agtcagccgc ttcctgaccc tacggcggta ctccaacgct
     2281 cgcggggaac gatgacacga gcggacggtc agagttttcg ccattaccgt ccggggtacc
     2341 gcctaggttc gtggaagcga tgcgggacca gctgcggcgg gtcgctgagg agacgtttgg
     2401 ctggctgcag ctgcgcgacg agcagctggc ggcgatggag caggtcatgg ccggccatga
     2461 cgtgctggcc gtgctgccca ctggcgcggg taagtcggcg atttatcagg tgcctgcgct
     2521 gctgctgcat ggcccgaccc tggtggtgtc tccgttgatc gcgttgcagg aggatcagct
     2581 ggagggcatt gctgataccc gggcgccgca ggcagtggcg gtgaattctg cgcaacgcag
     2641 tggcgagcag aaacaggcct ggcacgcgat ccggcaaggt aaagcggaat acctgtttct
     2701 atcacctgag cagctggcaa atgacgatgt cgtcgatgcg ttgacggatc tgcgggtgtc
     2761 gctgtttgtg gtcgatgagg cgcattgcgt ctcggcctgg gggcatgact tccgacccga
     2821 ctaccttcgc ttgggtcccg tgatccagcg gctcggtcat cctccggtga tcgcgctgac
     2881 cgccaccgcg
//
LOCUS       DASVXZ010000035         2629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_719065, whole genome shotgun sequence.
ACCESSION   DASVXZ010000035 DASVXZ010000000
VERSION     DASVXZ010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_719065"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VF788_00595"
     CDS             <1..355
                     /locus_tag="VF788_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020658165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX8932702.1"
                     /translation="VAAVYDGVGASTFDASLASLHRRGMLALFGAASGPVPPVDPQRL
                     NAAGSVFLSRPKLADYVATRDELAWRAGEVFDAILDGSLRITIGGRYPLAEASRAHQD
                     LQARRTTGKLLLLTG"
     gene            complement(383..1096)
                     /locus_tag="VF788_00600"
     CDS             complement(383..1096)
                     /locus_tag="VF788_00600"
                     /inference="COORDINATES: protein motif:HMM:TIGR04283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04283 family arsenosugar biosynthesis
                     glycosyltransferase"
                     /protein_id="HEX8932703.1"
                     /translation="MVPALNEAARIGPCLRRLRSDFPDCELVVVDGGSSDGTVDLAAR
                     YAATVRSAAGRATQMNAGAAVSSGDVLWFIHADCQVPADALELLRQALLDPGVVGGGL
                     QLSFDQRSVGLDYLAASSNVRARRLSWIFGDQAMFVRREVFDSVGGFPELPLMEDLEM
                     SRILRRHGRLVVLPTTVTASARRLVEQGVWRMTVLMQLLKLQFLLGVDPERIRRRYEA
                     GTRRGRRRQPGPTRSPRVR"
     gene            1305..2543
                     /locus_tag="VF788_00605"
     CDS             1305..2543
                     /locus_tag="VF788_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932704.1"
                     /translation="MSAVADRYGQAAILGAGPIGLDAALAFLDGGWSVTVYEAAASVA
                     ANVTAWSHIRLFTPWSMNTSARMCARLDAAGVPQPGPADYCPTGAELTKQLLNPLAEL
                     PELAAAIRRGTRVLAVAREGLLKHEEIGTAQRGSQPFRLLVSGPDGVERVEHADLLLD
                     CTGSYDRANVLGDGGIPAPGELEVADLITRRIPDVDREAEQWAGRRVLLVGAGKSAQT
                     VARDLAQLVAEQPSTSVVWAVRAADPDWGQVAGDPLAQRQELVEVAQRLHSGAVPGVQ
                     VRTGVVVDALRTSGAGVAVALRSIAGDVEEIVVDRIIALTGFLGDTSLYRQLQVHECY
                     ATAAPMTLSAALLGAAGDDPADCLAQASHGVDALRVPEPNFFVLGIKSYGHNSTFLLR
                     VGYEQVDEVVGAYTAHTAQL"
BASE COUNT          427 a          885 c          899 g          418 t
ORIGIN      
        1 cgtagcggcc gtctacgacg gggtgggcgc atcaacgttc gacgccagcc tcgcctcgct
       61 acaccgccgc ggaatgctcg cattgttcgg cgcggccagc gggccggtgc cgccggtgga
      121 cccgcagcgc ctcaacgcgg ccggctcggt cttcctctcc aggcccaagt tggctgacta
      181 cgtcgcgact cgtgacgaac tcgcgtggcg ggccggtgag gtgttcgacg cgatcctcga
      241 cggatcgctg cggatcacca tcggcggccg gtatccgcta gccgaggcca gccgtgccca
      301 ccaggatctg caggcccggc gcactaccgg caagctcctg ctgctaaccg gctgaccggc
      361 ttccccggtc cgggaaaggg tcctaacgga cacgaggcga tcgggtgggg cccggctgcc
      421 gccggcgtcc gcggcgtgtc ccggcttcat agcgccgacg aatccgctcc ggatcgactc
      481 cgagaaggaa ttgcagttta agcagttgca tgagcacagt catgcgccat acaccctgct
      541 cgaccagccg ccgggccgag gcggtgacgg tggttggcag cacgaccagc cggccgtgcc
      601 gccgcaggat gcgggacatc tcgaggtctt ccatgagggg cagctcggga aacccgccca
      661 ccgagtcgaa cacctcacgg cgcacgaaca tcgcctgatc cccgaatatc cagctgagcc
      721 ggcgggcccg cacgttggag ctggccgcca ggtaatccag gcccacgctg cgctgatcga
      781 agctcagttg caggccgcct ccgaccacac cgggatccag cagtgcctgc cggagcagct
      841 ccagcgcatc ggcaggcacc tggcagtccg catggataaa ccagagaaca tcaccgctgc
      901 tcaccgcggc tccggcattc atctgggtgg cgcggccagc ggcactgcga acggtggcgg
      961 cgtaccgagc cgcgaggtcc acagtgccat cagagctgcc gccgtcgacc accaccagtt
     1021 cgcagtcggg aaagtcgctt cgcaaccgtc gcaggcaagg cccgatccgt gccgcctcgt
     1081 tgagggcggg caccacgatt gacaccgtcg cccgcctgct cacccgaatt caagactttc
     1141 cgcctgggca gcccgacggg attggcccac cgtctcatcg taactgcgct tgatctcagg
     1201 cgatgccctg atcgtaggtc cccgtctgtt cccgatccga acttccgcga gtgccgaaca
     1261 gtgggacgga tccagtggac cctacggacg acgatggagt gcgggtgagc gcagtagccg
     1321 atagatatgg ccaggcagcg atcctcggtg caggaccgat cgggctggat gccgcgctgg
     1381 cgtttctgga cggtggctgg tcggtcaccg tgtacgaggc ggctgcgtcc gtggccgcga
     1441 acgtgacggc gtggagccac atccggctgt tcacaccatg gtcgatgaac acctcggcgc
     1501 ggatgtgcgc gcgcctggac gcggctggcg tgcctcagcc gggacccgcc gattactgcc
     1561 cgaccggcgc tgagctcacc aagcagctcc tcaacccatt ggccgagctg cccgagctgg
     1621 cggctgccat tcgccgaggc acccgggttc tcgcggtcgc ccgcgagggt ctgctcaagc
     1681 acgaggagat cggcacggca cagcgtggat cacagccctt ccggttgctc gtatctggcc
     1741 ctgacggcgt cgagcgggtg gagcacgcgg acttgctgct ggactgcacc ggcagctacg
     1801 accgggccaa cgtgctcggc gatggcggga tcccagctcc gggtgagtta gaggtggctg
     1861 acctgatcac ccgccggatt ccggatgtcg accgcgaggc cgaacagtgg gcgggacggc
     1921 gagtgctgct ggtcggtgct ggcaagtccg cgcagacggt ggcgcgggac ctcgcacagc
     1981 tggtagccga acaaccgagc acgagtgtgg tgtgggcggt ccgcgcggcg gacccggact
     2041 ggggacaggt agcgggtgac cccctcgccc agcgtcagga actcgtcgag gtcgcccagc
     2101 ggctgcattc cggggctgtg cccggtgtgc aggtgcgcac cggcgtggtg gtagacgcgt
     2161 tgcgcacctc aggggccgga gtggcggtcg cgcttcgctc gatcgccggt gacgtggagg
     2221 agatcgttgt cgaccgcatc atcgccttga ccggttttct cggtgacacc tcgctgtacc
     2281 gacagctgca agtgcacgag tgttatgcca ccgccgcgcc gatgaccctt tcggccgcgc
     2341 tgctgggcgc ggcaggtgac gacccggcgg actgcctggc ccaagcctcg catggggtgg
     2401 acgcgctgcg ggttccggaa ccgaacttct tcgtcctggg cataaagtcc tacggccaca
     2461 acagcacgtt cctgctacgc gtgggctacg agcaggtcga cgaggtggtc ggcgcgtaca
     2521 ccgctcacac agcacagttg tagatcagcg ggagagatcc atcgcgctga cgcagcgtga
     2581 ggaacagctc tacagcgcgc cgcttggcct cggccatgct gacctcggg
//
LOCUS       DASVXZ010000036         2255 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_362952, whole genome shotgun sequence.
ACCESSION   DASVXZ010000036 DASVXZ010000000
VERSION     DASVXZ010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362952"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VF788_00610"
     CDS             <1..375
                     /locus_tag="VF788_00610"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932705.1"
                     /translation="GLRTPLGGALLSLALVAVLGLAMSAASYGLALRLKNEDAFAPVQ
                     SSIIVPVLLLSGILLPMSLAPLWLYIVSRFNPFVYVVDATRAAFVGDVSGTTVLLGVL
                     AAVGLSIVAVSFGVRTFQRENA"
     gene            404..1945
                     /locus_tag="VF788_00615"
     CDS             404..1945
                     /locus_tag="VF788_00615"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF012946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX8932706.1"
                     /translation="MLRTDQAELRTLRMDHPPHVRVAIIGSGFAGLAMAIQLKRRGLD
                     DFVILERADDIGGAWRDNTYPGCACDVPSTLYSFSFAANPDWARSFSPQQEIHQYLRA
                     CVHRFGLWGHLRLCHEVWEASWDATREAWLIETSGGAFTATVLVSATGQLSEPALPPL
                     PGLERFTGATFHTSRWDHSLDLTGSRVAVIGTGASVVQLVPAIADRVAALHIFQRTAA
                     WVLPQRNRVRGPIERRALRRCPWLQHVTRAALHWGREGALIGFTHPGIMRAVSLLARL
                     HLRRQVPASALRAALTPPYAMGCKRVLRSSTFYPALSREHVELVTEAIHEVRERSVVT
                     ADGTERSVDTLIFGTGFRAAEMPMAHRIRGRDGRLLADDWRQTGAQAYLGTTVAGFPN
                     LFLLTGPNSALAHNSVLLGIESQVHYVLDALRVMQVDQVATVEVQPQVQDAFVRQVQA
                     RMARTVWVQGGCHSWFLDDTGRNTTVWPWPVARLSRSTRRFDRENYLIQHGVPDLHSN
                     RGVAR"
BASE COUNT          346 a          771 c          743 g          395 t
ORIGIN      
        1 ggtctacgca cacctctcgg gggggcactg ctgagcttgg cgctggtcgc ggtcctcggg
       61 ctggcgatga gcgcggcctc ctacgggctg gcgctgaggc tcaagaacga ggacgccttc
      121 gcaccagtgc agagctcgat catcgtgccg gtgctgttgt tgtccggcat cctgctaccg
      181 atgtcgctag cgccgctgtg gctgtacatc gtgtcgcggt tcaacccctt cgtctatgtc
      241 gtggacgcca cccgagctgc cttcgtgggc gacgtcagcg gcactaccgt cctgctcgga
      301 gtcctcgccg ccgtggggct ctccatcgtc gcggtgagct tcggcgtccg taccttccag
      361 cgggaaaacg cctgactcgg gccagcagct accgtgaagg agcatgctgc gaaccgatca
      421 ggccgaactg aggacgctgc ggatggacca cccgccgcac gtccgggtgg cgatcatcgg
      481 ttctgggttc gccgggctgg cgatggcgat ccagctcaag cgccgcggcc tcgatgactt
      541 cgtgatattg gaacgagccg acgacatcgg tggcgcctgg cgggacaaca cctacccggg
      601 ctgcgcctgt gacgtgccct ccacgttgta ctccttctcc ttcgccgcca acccggactg
      661 ggccaggagc ttttccccac agcaggagat ccaccagtac ctgcgggcct gcgtgcaccg
      721 cttcgggctg tggggccacc tgcggctgtg tcacgaagtg tgggaggcga gctgggacgc
      781 cacccgcgaa gcctggttga tcgagacctc cggcggcgcc ttcaccgcga cagtgctggt
      841 gtcggcgacc ggccaactca gcgaacccgc gctacctccg ctgccgggcc ttgagcgctt
      901 caccggggcg acctttcata cctcccgctg ggaccactcg ctggacctga ccgggtccag
      961 ggtcgcggtg atcggcaccg gcgcctcggt ggtgcagttg gtccccgcga tcgctgaccg
     1021 ggtcgccgcc ttgcatatct tccagcgcac cgcggcatgg gtgttgccac aacgcaaccg
     1081 ggtgcgcggc cccatcgagc gccgcgcctt gcggagatgt ccctggctgc agcatgtgac
     1141 gagggccgcg ctgcattggg gaagggaagg cgcgttgatc ggcttcaccc atcccgggat
     1201 catgcgggcg gtgagcttgc tcgcccggct gcacctacgg cgtcaagttc cggcatcagc
     1261 gctgcgcgcc gcgctgacgc cgccctacgc catgggctgc aagcgggtgc tgcgctcgag
     1321 cacgttctat cccgcgttga gccgcgagca tgtcgagctg gtcaccgagg cgatccatga
     1381 ggtgcgggaa cgatccgtgg tcaccgccga cggcaccgag cgctcggtgg acaccctcat
     1441 cttcggcacc gggttccgcg ccgccgagat gccgatggcg caccgcatcc gcggccgtga
     1501 cgggcggttg ctcgctgacg attggcgcca aacaggcgcc caggcctatc tgggtaccac
     1561 tgtcgccggg tttcccaacc tgttcctgct caccggtccg aatagcgcac tggcgcacaa
     1621 ctcggtgcta ctcgggatcg aaagccaggt tcactacgtg ctcgacgcgc tgcgggtgat
     1681 gcaggttgat caggtagcga cggtggaggt ccagccgcag gtacaggacg cctttgtgcg
     1741 ccaggtacag gcccggatgg cccgcacggt gtgggtgcag ggcggctgcc acagctggtt
     1801 cctggacgac accggccgca acaccaccgt ttggccctgg cccgtcgccc gcctcagccg
     1861 ctcaacccgc cgcttcgacc gggagaacta cctcatccag cacggcgttc ctgacttgca
     1921 ttccaatcga ggagttgcac gataactccg ttgggatcac gcacctgaag gcgcgctcgc
     1981 ccactcctcc tcggtgagcg ggcatgggat gatcacatct tcgccctgca accgcgccag
     2041 tttttcctcc agatcgtcga cgaaccggat taccgtacac agtacgggac aagattcgtg
     2101 actgtccgat caaccggact ggcgaaggga actggcaaaa cgggcgtccg gcccaaggcc
     2161 agtccggtag ccgaccgcag cgccgtcagc gcgtcgctgc ctggtccggg acggcgccag
     2221 gcgagatatc cgtcggggcg gatgagcgcc gcgcc
//
LOCUS       DASVXZ010000037         2186 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_273222, whole genome shotgun sequence.
ACCESSION   DASVXZ010000037 DASVXZ010000000
VERSION     DASVXZ010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273222"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..495)
                     /locus_tag="VF788_00620"
     CDS             complement(136..495)
                     /locus_tag="VF788_00620"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8932707.1"
                     /translation="MFASEDSRILRTPVRTPRANAIAERWIGTLRRELLDRMLIVNRR
                     HLETVLAKYVAHFNAHRPHRASHQAAPLKPLPQGASSPHLRLRRRDPDRWTDPRIRPG
                     CMTWMTCSAPTGAPNRS"
     gene            complement(655..1421)
                     /locus_tag="VF788_00625"
                     /pseudo
     CDS             complement(655..1421)
                     /locus_tag="VF788_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014374930.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1435..1530
                     /locus_tag="VF788_00630"
                     /pseudo
     CDS             1435..1530
                     /locus_tag="VF788_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            1715..>2186
                     /locus_tag="VF788_00635"
     CDS             1715..>2186
                     /locus_tag="VF788_00635"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX8932708.1"
                     /translation="MPEREAGWAFRPDVEGVRGVAVLAVVLYHAACPGLTGGFAGVDV
                     FFVISGFLITGLLWQELATTGTVRLARFYGARARRLLPAGITVLAVVVVASAWWLPPL
                     RARSGLVDALASAVYVGNYRFALRGTDYLAADGSASPFQHYWSLGVEEQFYLLWP"
BASE COUNT          322 a          645 c          796 g          423 t
ORIGIN      
        1 gtcgacaaat tgcgccgcac caaaatacgg cgccggctgt ggggtgatcg gaccgtcctt
       61 tgtgatcgcg tcggttgtca cgcccgcgca cagcagacgg cactccaggt tggtcgtcat
      121 ggtgtggatc ctccctcagg atcggtttgg tgcacctgtg ggtgccgaac aggtcatcca
      181 tgtcatgcaa cctggacgta ttcgtggatc agtccaccga tccgggtcgc ggcgtcggag
      241 gcgaagatgg ggtgatgatg cgccctgggg cagtggttta agcggtgctg cttgatgcga
      301 tgcccggtga gggcgatggg cgttgaagtg cgccacgtac ttggccagca ctgtctcgag
      361 gtggcggcgg ttgacgatca gcattcggtc gagtaactcg cggcggaggg tgccgatcca
      421 tcgttcggcg atcgcgttcg cccggggcgt ccgcaccggc gtgcgcagga tgcgactatc
      481 ctcgctggcg aacaccgcgt cgaaggtgtc agtgaactta ctatctctgt cctgatcaag
      541 aatgcgaact gagctgcacg gtcgccgagg tgcatcagca gattccgcgc ctgctgcgta
      601 atccaggccg cggtggagtt tgcggtgatg ccgaggaggt ggacacggcg ggtgcaggtg
      661 cccgttgacg cggcggaact gcttgccggc ttcggccatg ccggcggcgc accagcgcag
      721 cgccatgttc ccggactgcc agtgcttcac gttgcgggcg tgagtgcggc tgatcgagat
      781 catcgattcg atgctgttgg tcgagcgcag tgtgcgggcc agggtgggcg gcactccgag
      841 gcgcagcacg gtcagcgtct cggcgagcct ctcacgcagc gacgcagccg cgccggggtg
      901 ggtgcggtcc agctcacggg cgagggcctc gagctgggct cgggcggtca gtgcggtctg
      961 ggcgtgatag gcctgccgca tccgcttggt cacggtgacg acgaggtgct cgggcagccg
     1021 gtcagcgaca ttgcgcagct tgtgggtttg acaccgagcg atcaccgggt ggtcgaacac
     1081 ccgggatacc ctggtgcgca gcgctttcgc accgtcgatg acgaccagga tcgggcaggt
     1141 ggtgtccagg ccccggttcc gcaagccggt gagcagatcg gtcaccacgg tgctgttctc
     1201 cgtgtcgccc tcgaccaggg ccagcgggtg caaggtgact gtcgatgcca gtcccgagtg
     1261 cgacgacgca gacgtgctca ccgaagtgga cgccatcgag catcaacgcg accaggtcca
     1321 gcgcggccag tggcctggcg agcaggtcgc tcagcgcggt ttcggtcgcc ttgacgaacc
     1381 gccggggtga ccgcggactt gctcgtcgcc aacgccgacg cccgggcaac ctcccaaaac
     1441 atccgccgcg gacactacga actcggcatc gaagaaccca cgacactgcg ggtgatggca
     1501 gctttcactg agctgactcg agccatctga tcgaacaggc caccgaacga atccaggctc
     1561 ttaccgctgc gcacaaagca acagtgccgt tcacggtcca cgacagccgt aggcgcctag
     1621 gttgatcaca cttaccggat gccgcggctg gtgcagctgg ggaccgtggc ggggtggctg
     1681 gttgtcgtcg gtgggtgggt cgtagcctgc cacggtgccg gagcgggagg ctggctgggc
     1741 gttcaggcca gatgtcgagg gcgttcgcgg ggtcgcggtg ttggccgtgg tcttgtacca
     1801 cgctgcgtgc ccgggtctga ccggcggttt tgccggcgtc gatgtgtttt tcgtgatttc
     1861 cgggtttttg atcaccgggc ttctgtggca ggagctggcg accacgggca cggtgcggct
     1921 ggctcggttc tacggtgccc gggcccggcg gttgctcccg gcggggatca ccgtgttggc
     1981 ggtcgttgtc gtcgcctcgg cgtggtggtt gccgccgctg cgcgcgcgta gcggcctggt
     2041 tgatgctctg gccagcgcgg tgtatgtggg caattaccgg ttcgcgctgc gggggacgga
     2101 ctatttagcc gcagacgggt ccgcttcccc gtttcagcat tactggtcgc tgggtgtgga
     2161 agagcagttc tacctgctgt ggccgg
//
LOCUS       DASVXZ010000038         8756 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1077904, whole genome shotgun sequence.
ACCESSION   DASVXZ010000038 DASVXZ010000000
VERSION     DASVXZ010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8756
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1077904"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VF788_00640"
     CDS             complement(<1..737)
                     /locus_tag="VF788_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8932709.1"
                     /translation="MGYSLGVDLGTTFVAAAISSETRIEMFTLGDRSVVTPATVYVRE
                     DGTLITGEAANLRAVSKPDRVSREFKRRLGNPTPVILGGQPHAVTALLGALLRDVVAK
                     VEKTEGAAPERVVLTHPANWGPFRRALFEEVPQHAGLESPTLVTEPEAAAAHYAASRQ
                     LADGDIVAVYDLGGGTFDATILRKLPGGVEILGTPEGIERLGGVDFDEAILSFVDYAA
                     DGALGELDLRDSQTTVALARLRQDCILA"
     gene            1029..1670
                     /locus_tag="VF788_00645"
     CDS             1029..1670
                     /locus_tag="VF788_00645"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX8932710.1"
                     /translation="MVSAATGNASDGPREPPSEASRRREKDRWLRRRRIERQLHDGAA
                     LRISALTLHLGLLRHREPLDEDTAQQCVDKLQDELHAVLEELRDVAAMIYPPLLDEAG
                     LGPALRAVADQLGIPVEVVTSGERFGPAAEGAAYFAVARCLAALPSDAAKAEIVVRRE
                     NGELMVAVSGVQACHAELIHDQAEPLGGSVEVINMRDGDRSGSSKITARIPCE"
     gene            1661..2326
                     /locus_tag="VF788_00650"
     CDS             1661..2326
                     /locus_tag="VF788_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8932711.1"
                     /translation="MRVALAEDGTLFREGLLMLLRAAGHEVVGSTPNGDELVTLLSTQ
                     PADVAILDIRMPPEPDGGLVTAERLRTAHPDLGLLFLSHYAESHYLMRILQIGTDRIG
                     YRLKEKVGSVDVLTDTLNRIHSGEIVIEPVLAKRLVDRPRGGKKDIVATLSERELEVL
                     RLMAEGQSNGGIAAMLYVTPKAVEKHIASIFTKFGLHIDTAAHHRRVLAVLTYLRSQR
                     SGA"
     gene            2479..3819
                     /locus_tag="VF788_00655"
     CDS             2479..3819
                     /locus_tag="VF788_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932712.1"
                     /translation="MIPAGPLRYFLIACLVGTTFAVVVLGSGGLLGASAGSMLLTPFV
                     AAAMSVAEVAIALPYIDRLVQGVAHRPTTTPYAALANAAAGIQAGSVEQALPSLAKVL
                     AEGTQAQCAVIWLAVEEKLVSAASYPATACAESRTIANLAALLAQPDIGHVVPVLDGS
                     ILRAALTISKPDLAVTPADRRLVQDVANGAGLLLRGAQLNAELEERVRRADELADELR
                     ASRQRLTRARDVERQRLIAELTNVTTGRLSTLRAETTNAVRLLSGDTASAERAAHALA
                     QARNGLDELLDRFRAIARGVYPAVLRDQGPYGALEEVASDLPRRVRLSGNLPQRWAWE
                     VESGIYYLAASAIQQLAGRPAEQPLHVHLEHGNGQLAVRIHDPAPATAASDVLTVLTV
                     DVDRLAALGGDVEIIECGAGDIELRAWLPDRLEPSVDHRFGLRPHLLRSGQDRP"
     gene            3816..6614
                     /locus_tag="VF788_00660"
     CDS             3816..6614
                     /locus_tag="VF788_00660"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8932713.1"
                     /translation="MISNPSERSSPSGYWGLFAYWALFAICGVVTIGTLTLSGIVALA
                     SHSSGVAATFAAAASDGSVWARGVLAAVPSSEPLGQMLLDYAFSSLNLVVAIVLLIVG
                     GRNWVTMLLALGLMGWASAFNLQTDTAELVVETAVGQNIMELPNEFLHVVTCVAYLLG
                     LLLFPTGRWQDDLGSGSHRRVVMVVGTAILVAVGLGTTLFPYTISSVLFSGLIVPLVG
                     SIAFPRRIRRGATSQQRTQARLLFSVLAAAFCISVVLWITTLLLQYLNQPGLTIVDPS
                     GQPTGLFATVPAAPLFWFSRLASTATAAALLVAGLHSRLWRAEQLFSRGLAATVVVVL
                     AGGAFVVLRAVADQLTDIAPTVLAIVLVGMFFLPLYTHTERVVDRLLYGSRPTPYSVL
                     ADLTALSQSTSSAGAPDLAGLPEAIAKGLGASSCRLTVIRPGLQDRTYTWVNGEIAAD
                     TAEHVSLPIRLGDTQVGTVAVDRAAIVGLNAQRHHLLEDIADSLGAVLQVSRLGIELE
                     RQLRAALAHAEDIAISRRQAVAEMDNERRTIERNLHDGAQHHLVSLRVILGLVEHEVA
                     NGQIHQARDRLGQLTTQINTADAMLADTATGVCSILLADRGLIAALRSELSAAHPPIA
                     VTAPETLADRRFSPEVEAAVYFCCLEAVNNARKHARGAAVGVQLREANGFLHFAVHDD
                     GPGFTVHSGGNGTGGAPAGRGLRNVTARIASVGGEISIQSAPGAGTTIEGSVPLPRGQ
                     SLLDQVRKLLREMRDLYDTTAERARLRGIQAQLNGSSGVGAVNPADRLRRSDALKARS
                     VLRELDAVMRSSPLGTDRANSLRYQLEQIHSEAHELNEIDLLDVLRSGTLPLTSDERQ
                     VAEGLLGATGAQPWNRLGLRADANPREVRRAAELELDRWQRRASHPASTRAIRDAAEI
                     LVRTCEELLTQVDTPRAG"
     gene            complement(6634..>8756)
                     /locus_tag="VF788_00665"
     CDS             complement(6634..>8756)
                     /locus_tag="VF788_00665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glucosidase"
                     /protein_id="HEX8932714.1"
                     /translation="KAGPADLCLQITVANRGPEVATLHVLPTLWFRNTWAWGLPGQEA
                     VPEIRAGKGATLTAQHTQLGSLVLSGDGEAEPLLCDNETNTQRLYGAPGRSAYPKDGI
                     GDHVLAGAATVNPEGVGTKGALWYRLDVAAGAQAVIRLRLTAGKGSGALGPGFSEVMT
                     ARRAEADEFYRALTPAGASEDEALVLRQAMAGMLWGKQFFHYNVARWLDGDPAGPPPP
                     QPRRHGRNSSWRHLNNADVISMPDPWEYPWYAAWDLAFHCVPLGRLDPTFAKKQLLLL
                     LREWYMHPDGQLPAYEWAFGDVNPPVHAWAALQVFHNDGSHDFDFLARVFHKLLLNFT
                     WWVNRKDSEGNNVFEGGFLGLDNIGPIDRSAALPLAGVLEQSDGTAWMAMYCLNLLEM
                     ALVLAEHDRAYEDLATKFFEHFALIASAAHDGLWDPTDGFFYDVLSAADGRRIPLRVR
                     SLVGLLPLCATTTLGTATLRRLPDFAGRLLWFLKNLPQHASVVGETHVRDGFEGRLLS
                     MVGPEELRRILVPMLSEEEFLSPHGLRSVSRHHREAPFMLDLPELHASVDYEPAESTS
                     GLFGGNSNWRGPVWFPVNYLLVEAIRRYAQFFGDDFVVEHPTGSGVKRTLAEVAADLN
                     DRLISTFCNDRAGRRPVFGNYELFQSNSHWHDQLWFHEYFHGDTGAGLGASHQTGWTG
                     LVAECLLHRPDPSTRSLLSTGGLG"
BASE COUNT         1545 a         2897 c         2820 g         1494 t
ORIGIN      
        1 gccaggatgc aatcctgccg caaccgcgcc agcgcaacgg tcgtctgcga atcccgcagg
       61 tccaactcac cgagcgcgcc atcagcggcg taatcgacaa aggagaggat cgcctcatcg
      121 aagtccacac cgcccaaccg ctcgatgccc tccggggtac ccaggatctc cactcccccg
      181 ggcagcttgc gcaagatcgt ggcatcaaag gtgcccccgc ccaggtcata caccgccact
      241 atgtcgccgt cggccagctg tcgagaggcg gcgtagtgtg ctgcggccgc ctccggttcg
      301 gttaccaacg tcgggctctc cagccccgca tgctgcggaa cctcctcgaa taacgcacgc
      361 cggaatggac cccagttcgc cggatgagtc agcaccacgc gctcgggtgc cgcaccttcg
      421 gtcttctcga ccttcgccac gacatctcgc aacagagcgc cgagcaacgc ggtgacagca
      481 tgtggctgac caccgaggat caccggcgtc ggattaccca gccggcgctt gaactcacgg
      541 ctgacccggt ccggcttgct caccgcgcga aggttggctg cctcgccggt gatcaacgtg
      601 ccatcttccc ggacgtagac agtagccgga gtcaccaccg agcgatcacc tagcgtgaac
      661 atctcgattc tggtctcaga cgagatcgcg gccgcgacaa acgtagtgcc gaggtcgact
      721 ccgaggctgt agcccactca cgcctccctg aattactacg tcatagtagc tgacagcgcc
      781 ttgaccatcg ataaatttag agtcgggcga cgatccctca gatacatatt ggctcagata
      841 aattgggctc ggctcaccaa ctgtgcgtca ccgagtgggc acgatgtggt aatccagggt
      901 tccggcaaag tcatgcgagg ccgagcacgt cggctggggc gttccggccc actggccggg
      961 ggtaaacccc acctaacagt agggagggtc ctctttcctt ctctccacct gtcgttcaag
     1021 atgcagggat ggtttccgcg gccaccggca atgccagcga tggcccgcgc gagcccccgt
     1081 ccgaggcatc tcgccgcagg gaaaaagatc gatggctgcg tcgccggcgc atcgagcgcc
     1141 agcttcatga cggtgccgcg ctgcggatct ctgcgctgac gctgcatctg ggcctcctcc
     1201 ggcatcgcga gccactcgat gaagacaccg cgcaacagtg cgtcgacaag ctccaagacg
     1261 aattgcacgc cgtgttggag gagttgcggg acgtggctgc catgatctac ccaccgttgc
     1321 tggacgaagc cggcctaggc cccgcgctgc gcgcagtggc tgaccaactt gggattccgg
     1381 tcgaggtcgt gacctccggg gagaggttcg gaccggcggc ggaaggcgcc gcgtacttcg
     1441 ccgtggcgcg gtgtctggca gcgctgcctt cggacgcggc aaaggcggag atcgtggtcc
     1501 ggcgggagaa cggcgaactg atggtggccg tttccggagt ccaggcatgt catgccgaac
     1561 tcatacatga ccaggcagag ccgctgggcg ggtccgtcga ggtgatcaac atgagagacg
     1621 gagatcggtc agggtccagc aagatcacgg cgagaattcc atgcgagtag ccctggccga
     1681 ggacggcacc ttattccgcg aggggctgct catgctgctg cgcgcagcgg gacacgaggt
     1741 cgtcggcagt acgcccaatg gtgacgaact ggtcacgctg ctatcaactc aacccgcgga
     1801 tgtcgcgatt ctggacatcc gtatgccacc ggaaccggac ggtgggctgg tcaccgctga
     1861 gcgactgcgg accgcacatc ccgatctagg gctgctgttc ctttcccatt acgcggagtc
     1921 gcactacctc atgcggatcc tccagatcgg taccgacaga atcggctacc ggctcaagga
     1981 gaaggtgggc agcgtcgatg tcctcaccga caccttgaac aggatacaca gtggcgagat
     2041 agtcatcgag ccggttttgg cgaaacggct ggtagatcga cctagagggg gcaagaagga
     2101 tatcgtggcg acgctctcgg agcgcgagct ggaggtcctg agattgatgg ccgaagggca
     2161 gtcgaacggc ggaatcgccg caatgctcta tgtcacaccc aaagcggttg aaaaacatat
     2221 cgcgagcatc ttcaccaagt ttggacttca tatcgacaca gcagcgcatc accggcgagt
     2281 gcttgccgtc ctgacttacc tgcggtcaca gcggtcgggg gcatgatgaa aaagacttgg
     2341 ctgcccgtcc tcgagccctt agcgtaggca ccataccggg ggtgcgatgg ctggcatgcc
     2401 tgtgctattc gcccgtagct ggcgacttga ggctgcggtg ccggcctccg gctggaccgg
     2461 cggtgcacga tgagcaggat gatcccagca gggccgttgc ggtacttcct gatcgcctgc
     2521 ctggtgggta ccaccttcgc cgtggtggtt ctcggcagtg ggggacttct cggcgcatcc
     2581 gccgggagca tgctactgac gccgttcgtg gcggcggcta tgagcgtggc cgaggtcgct
     2641 atcgcattgc cctatatcga ccggctggtc cagggcgtcg cccaccgccc cacaactacc
     2701 ccgtacgcag ccctcgcgaa tgctgccgcc ggcatccagg caggttcggt ggagcaagct
     2761 cttcccagcc tagccaaagt gctggccgag ggtacccaag ctcagtgcgc ggtcatctgg
     2821 ttagcggtgg aggagaagct ggtcagcgct gcgtcttacc cggccactgc ctgcgccgaa
     2881 tctcggacca tcgccaacct ggccgctctg ctggcacagc ccgacatcgg acatgtggtc
     2941 cctgttctcg acggatcgat actccgagcg gcactcacca tcagcaaacc ggaccttgcc
     3001 gtgacgcccg ccgaccggcg gctcgtccag gacgtcgcca atggcgctgg gctgctgctg
     3061 cgtggggccc agctgaacgc tgaactcgag gaacgggtac ggcgggccga tgagctggcc
     3121 gatgagctcc gagcgtctcg gcaacgactg acccgtgcgc gggatgtcga gcgtcagcgg
     3181 ctgatcgccg aactcaccaa tgtgacgaca ggccggctca gcacactgcg cgccgagacc
     3241 accaacgctg tgcgcctgct ctcaggtgac accgcatcgg ccgagcgcgc ggcgcacgcc
     3301 ctcgcgcagg ccagaaacgg attggatgag ctactcgacc gattccgggc gatcgcgcgg
     3361 ggagtgtacc cagcggtgtt acgggaccaa ggtccttacg gcgcgctcga agaagtggcg
     3421 agtgatctac cgcggcgggt gcgcctgtcc gggaatctcc ctcagcgttg ggcctgggag
     3481 gttgaatcag ggatttacta cctggcggcc tcggcaatac agcagctggc cggccggcca
     3541 gcggaacaac cactgcacgt gcacctcgag cacggcaatg ggcagctggc cgtccgcatc
     3601 catgatcccg cccccgccac agcggcctcc gacgtgctca ccgtgctgac cgtcgatgtt
     3661 gaccgtctgg cggcattggg cggtgacgtg gaaatcatcg agtgcggtgc gggcgacatc
     3721 gagctgcgag cctggctgcc cgatcggctc gagccatcgg tggaccaccg tttcgggctg
     3781 cggccacacc tgctccggtc gggccaggac cgaccatgat ctccaatcca tcggagcgca
     3841 gctccccctc cggatactgg ggactcttcg cgtactgggc actgttcgcc atttgtgggg
     3901 tggtgacgat cgggacgctg actctcagcg ggatcgtggc gctcgcctcg cactcatcag
     3961 gcgtggccgc aaccttcgct gcggccgcgt cggacggcag cgtctgggcc cgtggtgtcc
     4021 tagccgcggt tccctccagc gagccactag gccagatgtt gctggattac gccttcagca
     4081 gcctgaacct cgtggtcgcc atcgttctgc tcattgtcgg tggccgaaat tgggtcacca
     4141 tgctgctggc gcttggtctg atgggctggg ccagtgcctt caacctccag acggataccg
     4201 cggagttggt ggtggagacc gcggtcgggc agaacatcat ggaactgcct aacgagttcc
     4261 tgcacgtcgt gacttgcgtg gcctatcttc tggggctgtt gctgttcccc accgggcgct
     4321 ggcaagacga ccttggctcc ggatcgcatc gccgcgtcgt catggtcgta ggtactgcga
     4381 tcctcgtcgc cgtcgggctc ggtaccacac tgttccccta cacgatcagc agtgtgctgt
     4441 tcagcggtct gatcgtcccc ctcgtcgggt ctatcgcgtt tcctcggcgc atccgacggg
     4501 gagcgacgtc gcagcagcgg acccaggcac gtctgctgtt cagcgtgctg gcggcggcgt
     4561 tctgcatctc ggttgtgctc tggatcacca ccctgttact gcagtacctc aaccagcccg
     4621 gattaaccat cgttgacccc tccggacaac ccacaggtct ctttgccacg gttcccgcag
     4681 caccgctgtt ctggttctcc cgcctggcgt cgacggccac cgccgcagcg ctactggtag
     4741 ccggcctgca cagccggctg tggagagcgg agcaactgtt cagccgtggc cttgcggcca
     4801 cggtcgtcgt cgtgctcgcg ggaggcgcct tcgtggtcct tcgcgcagtc gctgatcagc
     4861 tgacggacat cgcgccgact gtcctggcca tagtgctcgt cgggatgttc ttcttaccgc
     4921 tgtacacgca caccgaacga gtcgtggaca ggctgttgta cggcagccgg ccgacgccct
     4981 acagcgtgtt agctgacctc acggcgctgt cccagtccac ctcctcggcg ggggcgcccg
     5041 atctcgccgg gcttccggaa gctattgcca aggggctcgg cgcgagttca tgccggctca
     5101 ccgtgatccg ccccgggctg caggatcgca cctatacctg ggtgaacggc gagatcgcgg
     5161 cggataccgc tgagcacgta tcgctcccaa tccggttggg tgacacccag gtcggcacgg
     5221 tcgccgtgga tcgggcagcg atcgtgggcc tgaacgcaca acgtcatcac ctactagagg
     5281 acatcgcgga cagcctgggt gccgttctcc aggtgagccg gctcggaatt gagctcgaga
     5341 gacagctccg ggcggcactc gcacatgccg aggacatcgc catctcgcgg cggcaggcag
     5401 tcgccgaaat ggacaacgag cggcgaacaa tcgagcgcaa cctgcacgac ggagcgcagc
     5461 accatctggt gtctctccgg gtgatcctgg gcctggtcga acacgaggtc gccaacggtc
     5521 aaatccacca ggcgcgggat cggctgggac agctcacgac ccagatcaat accgcggacg
     5581 cgatgctggc cgacactgcg accggggtgt gctccatcct cctggccgat cgcgggctga
     5641 tcgcggcgtt gcgctccgag ctatctgccg cgcacccgcc gattgccgtg accgcaccgg
     5701 aaaccctagc cgaccgccgt ttttctccgg aggtcgaggc ggccgtctac ttctgctgtc
     5761 tggaggcggt gaacaacgca cgcaagcatg cacggggtgc cgccgtgggg gtacagctcc
     5821 gggaggcgaa cggcttcctg cacttcgccg tgcacgacga cggaccaggt ttcacggtgc
     5881 actcaggcgg caacggtacc ggtggcgccc cggcggggcg aggactgcgt aacgtcacag
     5941 cccggatcgc ctcggttggc ggtgagatct cgattcagtc ggctcccggt gccggtacga
     6001 cgatcgaggg ctccgttccg ctgccccggg ggcaatccct gctggaccag gtgcgaaaac
     6061 tcctccgcga gatgcgcgat ctctacgaca ccaccgcaga gcgcgcccgg ctgcgtggaa
     6121 tccaggctca gctgaacggg tcatcggggg taggagcggt caatcccgca gaccgcctcc
     6181 gtcgatccga cgcgctcaaa gcccgctcgg tgctgcgaga acttgacgcc gtcatgcgct
     6241 catcaccgct gggaacagac cgggccaaca gcctccgtta ccagctcgag cagatccatt
     6301 cggaagccca tgagctgaac gagatcgatc ttctcgatgt actgcgatca ggcacgttgc
     6361 cgctgacctc cgatgaacgc caggtagccg aggggctgtt aggagcgacc ggcgcacaac
     6421 cgtggaacag gctcgggctg cgggccgacg ccaatccacg cgaggtgcgc cgggccgccg
     6481 agctggagct ggatcgctgg cagcgccgcg cctcccatcc agcatcgacg agagccatcc
     6541 gggacgcggc ggagatcctg gtcagaacct gtgaagagct actgacgcag gtggacacac
     6601 ctcgggcggg ctagccggaa ggcggctcat gcgtcaccca aggccacccg tggataacag
     6661 ggacctagtc gatgggtcgg gacggtgcag caggcactcc gcgaccagac cggtccagcc
     6721 ggtctgatgg gaagcaccga gtccagcccc ggtgtcgccg tggaagtact cgtggaacca
     6781 caactgatcg tgccagtgcg agttggactg gaagagttca tagttgccaa ataccggccg
     6841 gcgtccggcg cggtcgttac aaaatgtgct gatgagtcgg tcgttcaggt cggcggccac
     6901 ttcggccagc gtccgcttca ctccagagcc cgtcggatgc tcgacgacga agtcgtcacc
     6961 gaagaactgc gcgtaccgcc tgatcgcctc aaccagcaga taattgaccg ggaaccatac
     7021 cggccctcgc cagttggagt taccgccgaa caggccgctc gtcgattcgg cgggctcgta
     7081 gtcgaccgat gcgtgcagtt ccggcagatc aagcatgaac ggtgcttccc ggtggtggcg
     7141 cgagaccgac cgcagcccgt gcggggagag gaactcctcc tcggaaagca tcggcacgag
     7201 gatccggcgt agctcctccg ggccgaccat cgacagcagc ctgccctcga aaccgtcccg
     7261 gacgtgagtc tcgcccacca cgctggcgtg ctgcggcagg ttcttgagga accacagcag
     7321 ccgcccagcg aagtccggca agcgccgcag ggtcgccgtg cccagcgtcg tggtcgcgca
     7381 cagcggcaac agccccacca gcgaccgcac ccgtagcggg atccgccgcc catcagcggc
     7441 ggagagcacg tcgtagaaga aaccgtcggt gggatcccac aacccgtcat gggcggccga
     7501 ggcgatcaat gcgaagtgct cgaagaactt ggtggcgagg tcctcgtagg cccggtcatg
     7561 ctcggcgagc accagggcca tctccagcag gttcaggcag tacatcgcca tccaggcggt
     7621 gccgtcactc tgctccagta ccccggccag cggcagagcc gctgaccggt cgatcggccc
     7681 gatgttgtcc aggccgagga acccgccctc gaagacgttg ttgccctcgc tgtccttgcg
     7741 gttcacccac caggtgaagt tcagcagcag cttgtggaaa acccgggcca ggaaatcgaa
     7801 atcgtgcgag ccgtcgttgt ggaagacctg cagcgccgcc caggcatgta ccggtgggtt
     7861 gacgtccccg aaggcccatt cataagcggg caactgccca tccgggtgca tgtaccactc
     7921 gcggagcagc aacagcagct gcttcttggc gaacgtcgga tccaggcgcc cgagcggcac
     7981 gcagtggaag gcgaggtccc atgcggcgta ccacgggtac tcccacgggt cgggcatcga
     8041 gatgacatcc gcgttattga ggtgccgcca ggaggagtta cgcccatgcc ggcgaggctg
     8101 agggggtggc ggtcccgccg ggtcgccgtc cagccagcgt gccacgttgt agtggaagaa
     8161 ctgtttgccc cacaacatcc cggccatcgc ctgccggagt accagcgcct cgtcctcaga
     8221 tgcacccgcc ggagtcagcg ctcgatagaa ctcgtccgcc tcagcgcggc gggccgtcat
     8281 cacctcgctg aacccggggc ccagcgcacc ggagcccttc cccgcggtca gccgcagccg
     8341 gatcaccgcc tgggcaccgg cagccacgtc gagccggtac cacaaggcgc ctttggtgcc
     8401 gacgccttcg gggttgacag ttgcggcgcc ggcgaggacg tgatcaccga tcccgtcctt
     8461 ggggtatgcc gaccggcctg gggccccgta gagccgctgg gtgttcgtct cgttgtcgca
     8521 caacagcggc tccgcctcac catcaccact caggacgagc gagcccagct gcgtgtgctg
     8581 cgctgtgagc gtcgcgccct tcccggcgcg gatctccggc acggcctcct gcccggggag
     8641 gccccaggcc caggtgttgc ggaaccacaa cgtcggcaac acgtgcaagg tcgccacctc
     8701 cgggccccgg ttggccacgg tgatctgcag gcacagatca gccggtccgg ccttgg
//
LOCUS       DASVXZ010000039         1535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_183775, whole genome shotgun sequence.
ACCESSION   DASVXZ010000039 DASVXZ010000000
VERSION     DASVXZ010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183775"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            505..945
                     /locus_tag="VF788_00670"
     CDS             505..945
                     /locus_tag="VF788_00670"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8932715.1"
                     /translation="MAHVQRFDHIGITVADLASVTAFFVGLGLEVEGTGSVQGEFVET
                     VCGIQGAHCEIAMLRPPDGGSRLELASFVTPDHVPGSPTAMANELGLRNVSFEVGNLE
                     AVVDELAMDGYGLVGGIGEYENSVRMAYVRGPEGIIVSLFEQIG"
     gene            complement(1247..>1535)
                     /locus_tag="VF788_00675"
     CDS             complement(1247..>1535)
                     /locus_tag="VF788_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008783747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEX8932716.1"
                     /translation="RRSLTWDQGPEMRDWKQVAVAADIAIFFCDPHKPWQRGTNENTN
                     GLLRQYFPQGSDLSVHSAADLDWVAAELNDRPRKRFGFRKPDELIGHLPQR"
BASE COUNT          249 a          470 c          522 g          294 t
ORIGIN      
        1 gtagtcgacg ccatgggagg tcaccccgtc gacgcccgat cacgcgtcga catcaggacc
       61 gacgatgtca cgaggggatc aacgctgcag atcacgcggc gggattgtcg tcctcgctgg
      121 acaatctcga cgcttacgtt gaatgctgca gcgcaggctt cctcgcagct acggtgctcg
      181 tcgctacggc gaccatccgt gtcgtagtga cggagggtca gatctacggt cgccaaccgc
      241 agcaagcagg cgactacacg ggcccgcata gggatcccta tcgaataggg tgatcaactt
      301 gcggtcggga ttcttgatcg gtcgcaagaa tgttcgttag ccgttcggct tgcgcacatg
      361 tggtcgcctg gatgatcttg cgctacgccg acttgtgaaa tccgggttga ccgcagcttc
      421 ccggcaagaa ccctgtcgag atcccagccc cagctccgtc tcagcatcga atcggcaaga
      481 cagctactgg aggatgtaga tcccatggca cacgtacaac gtttcgacca catcggcatc
      541 accgtcgcgg acctcgcctc ggtcacggcg ttcttcgtcg gactgggtct cgaggtcgag
      601 ggcaccggat ccgtgcaggg cgagttcgtg gagactgtct gcggtatcca gggcgcgcac
      661 tgtgagatcg cgatgctgcg gccgcccgac ggaggatccc ggctggagct cgcgagcttc
      721 gtcacgcccg accacgttcc tggatcgccc acagcgatgg ccaacgagct tggcctgcgc
      781 aacgtgtcat tcgaggtcgg caacctcgag gcggtcgtcg atgagttggc tatggacggg
      841 tacgggctcg ttggcggcat cggcgagtac gagaacagcg tgcggatggc ctacgtgcgt
      901 ggacctgaag ggattatcgt gtccctgttc gagcagattg gctgacaagc gtgcgcgttg
      961 cccacgtggg tcaatccgtc gcctatgccc gccaaccgat cgctggctga tccgaacgtt
     1021 cccgttgagc ggatggcgga ttctggcagt cgtcgcaaca cggcgctgcg tgcggcttgc
     1081 tcgctggtgg ttgagtgtag gtcgctgggt cggcggcggt cgctggtacg ggccggcttg
     1141 cccacgcctc aacggcgctg cgcagggcgc tatgccctgc ccgtctcacg cgcccgccgc
     1201 ctcgtgctgg ggcgggggcc tgaagcgcag gcacggccca ggccggctat cgctgtggga
     1261 ggtggccgat cagctcgtcg ggtttgcgga acccgaatcg tttgcggggc cggtcgttga
     1321 gctcggcggc gacccagtcc agatcggcgg ccgagtgcac cgacaggtca ctgccctggg
     1381 ggaagtactg gcgcagcaac ccgttggtgt tctcgttagt gccgcgctgc cacggcttgt
     1441 gggggtcgca gaagaagatg gcgatgtccg cggcgacggc gacctgtttc cagtcgcgca
     1501 tttccggacc ctgatcccag gtcagcgatc ggcgc
//
LOCUS       DASVXZ010000040         1575 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1528407, whole genome shotgun sequence.
ACCESSION   DASVXZ010000040 DASVXZ010000000
VERSION     DASVXZ010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1528407"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /locus_tag="VF788_00680"
     CDS             complement(<1..822)
                     /locus_tag="VF788_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
                     /protein_id="HEX8932717.1"
                     /translation="MKTDLDTLLVALYVLIDDHVIPPQQRGPGRPKKLTDAELVCLAV
                     AQVLLGARSEHHWLRMCYGRLGHLFPYLPKQPGYHKRLTAATPLICQTMLSLAMLCPS
                     WADDLRLIDATPVPCGSSRETVRRSELAGWAGYGYCAAHSRWYWGLKLYLITTPEGMP
                     VAWCLADPKLGEREVAEELFGHARDHSALRDGMIVLADKGLSGKELERFVADQIGVLL
                     ARPDRTDEKRRYGNLAGMRQWIEAIYDTCKDQLNLEGHGGRTPAGVIVRVAQRLLA"
     gene            complement(1227..>1575)
                     /locus_tag="VF788_00685"
     CDS             complement(1227..>1575)
                     /locus_tag="VF788_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEX8932718.1"
                     /translation="MTRTSRLLARIGTAAIAVTAPLVFVAPALAGPARQDPWDQVAAC
                     ESGGNWSANTGNGFFGGLQFTRGTWHSFGGGAFAGSADQASRSEQIAVAEKVLRAQGW
                     RAWPTCSRRVGLR"
BASE COUNT          262 a          529 c          521 g          263 t
ORIGIN      
        1 ggcgagcagg cgctgggcca cgcggacgat gactccggcg ggggtgcgtc cgccgtggcc
       61 ttccagattg agctggtctt tgcaggtgtc gtagatcgct tcgatccact ggcgcatgcc
      121 ggcgaggttg ccgtagcggc gcttctcgtc tgtgcggtcg ggtcgggcca gcagcacccc
      181 gatctggtcg gcgacgaagc gttccagttc cttgccagac aggcccttat cggccaacac
      241 gatcatcccg tcgcgtagcg cactgtggtc gcgggcgtgt ccgaagagtt cttcggccac
      301 ctcgcgctcg cccagcttgg gatcggcgag gcaccacgct accggcatgc cctcgggggt
      361 ggtgatcaga tacagcttca ggccccagta ccagcgcgag tgggccgcgc agtagccgta
      421 gcccgcccac ccggccaact ctgagcgcct gaccgtctcc cgtgaactgc cacagggcac
      481 cggggtagcg tcgatcagcc gcagatcatc cgcccacgac gggcacagca tggccaacga
      541 cagcatggtc tggcagatca gcggcgtcgc cgcggtcaac cgcttgtggt agccgggctg
      601 cttgggcagg tagggaaaca ggtgtccaag ccggccgtag cacatccgca accagtgatg
      661 ctcgctgcgc gcgcccagca gcacctgggc caccgccaag cacaccagct cggcatcggt
      721 gagctttttc ggccgtcccg gcccacgctg ctgaggtggg atgacgtgat cgtcgatcag
      781 gacatacagt gcaacaagga gggtatcgag gtctgtcttc acaaacgatc atcgatgccc
      841 tccgccttat gctgatcaag ctgccacgcc gcaccaagcc ggattaggaa tcactcatct
      901 agctgacacc ccactgcgcc gggagggtcg gcggcgtgcc ggtgcagggt ccaccgtggt
      961 gttcgtgctg ctggtggacg acggtagacc gccgggtgct gcggtcgggc cgcacggcga
     1021 caccacagtg ccatctgcga gtacctcgcc ggccccttcg gccggatcaa gcccgacgtc
     1081 gaccccacca cgcccgacgc cagtgcggcc tggaaggcta tgacgcggta gcagtctgag
     1141 gacagcctgt ctgcctgttc tggttgaggc agctcgactc ccgccggctg caacggcggg
     1201 agtcgagcgc gggatgaggc cggttgtcag cgcagcccga cccttctgga gcaggtaggc
     1261 caggccctcc agccctgcgc gcggagcacc ttttcggcga cggcaatctg ttccgaacgg
     1321 ctggcttggt cagcggagcc cgcgaaggct cccccgccga acgagtgcca cgttccgcgg
     1381 gtgaactgca agccaccgaa aaacccgttg ccggtattgg cgctccagtt accaccgctt
     1441 tcgcacgccg cgacctggtc ccacggatcc tggcgtgccg ggccggctag ggccggtgcc
     1501 acgaatacca gcggggccgt cacagcgatt gcggcggtac caatacgtgc gagtaatcgg
     1561 gaggtccttg tcatg
//
LOCUS       DASVXZ010000041         2516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_94398, whole genome shotgun sequence.
ACCESSION   DASVXZ010000041 DASVXZ010000000
VERSION     DASVXZ010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94398"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..343)
                     /locus_tag="VF788_00690"
     CDS             complement(<1..343)
                     /locus_tag="VF788_00690"
                     /inference="COORDINATES: protein motif:HMM:NF019138.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932719.1"
                     /translation="MSRPSYRTPHDQPAQEDIHMYDNDIPTLHADTGRAHEPHEDGSL
                     LPVAGILDIVDDLAVVRTGGYLAGPHDAHIPRAQVRAHGLRRGDTVTGSARPAGKGQK
                     LASLVQVNTING"
     gene            1132..1431
                     /locus_tag="VF788_00695"
     CDS             1132..1431
                     /locus_tag="VF788_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932720.1"
                     /translation="MASPKAVLDRAGVVMAARGPRKLEQATAELLAAELYRVVREEPE
                     GLWFSWWFEELAEAAVARIREEASSRDGAWQLPWRLLHSLTSIGSPARVRTPAQQ"
     gene            complement(1623..>2516)
                     /locus_tag="VF788_00700"
     CDS             complement(1623..>2516)
                     /locus_tag="VF788_00700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEX8932721.1"
                     /translation="AVARKFIEDESVNLAAVIAFWAFFSVFPLLLIFVTLLGYFLPPR
                     LQGDVLRSAASFFPLLSTDSIGRLSGRWWTLLVGILSAVWSGSFVVIAIQSAFNSVWE
                     IPPAQRPSIGAQIKRGLFALGAIALGLIVSTAISSYLTATATGTGLGVVARLAGYLIA
                     VALDVGLFIVAFRLLTDRDVSTRDVLPGALLSGIVFWLLQQLSSLIIFRYLHNAERIY
                     GSYATVITMLTWFYSQSVVTLVGAQLNVVLKERLHPRRLITATATEADHRAYDAYAKE
                     RTYHHDQRIHTEVQQYDSDEK"
BASE COUNT          452 a          721 c          890 g          453 t
ORIGIN      
        1 gcccgttgat ggtgttgacc tggacgaggg acgcgagctt ctgacccttg ccggctgggc
       61 gggcactgcc ggtgacggtg tcgccgcggc gtagcccgtg tgcgcggacc tgcgcgcgcg
      121 ggatatgggc atcgtgcggc ccggccaggt agccgccggt gcgaacgacg gcgaggtcgt
      181 ccacgatgtc gaggatcccg gccacgggca gcagcgaacc gtcctcatgt ggctcgtggg
      241 ctcggccggt gtcggcgtgc agggtgggga tgtcgttgtc atacatatga atgtcttcct
      301 gggctggttg atcatggggt gtgcggtaac tgggccggga cacgccggct cctgccgcgg
      361 aaggttcccg ttcgcgccag gaatggcttc accacgaaag ccacgtccgg cggtgtagga
      421 ggggattcga gaacttctgt gggggcatgt cgtctgcctg catccacaag aaggagacga
      481 cttcgacgtt acctactcga ctatcggcgc gcaacagcat tcccagccgg cctggttgac
      541 gtgcctgggg cgtgatgtga ctgggtggca atggacgcgc acacggtagc taccctgcga
      601 tttgacataa atcgcggccg aactccatcg gcatccctga tgtagcgttc ctgcggcgca
      661 accgcatgaa cacgtcaccg gcgaggaact cggccactct cgcatcgagc cgaccaacga
      721 ccgcgccgca ggctccgccc acgcgcacaa atccagtgtc gatgagcgtg tgttggggat
      781 ggccgatgca tctgcgggta gctcatgttc atacccgtgg cggggtgtga accggctggg
      841 tatcggcatg gccttgagta cttgatgagc tgagcaagga cctgcgtggg cccgtgggtt
      901 ttccgcatcc gaacaatcgg aacgtgtctg agaaccgctc cgccaagccg cgaccgacgc
      961 tgacctgcca cccttttcag tcgagctcgc ccaggggcgc gagaagcaca atctgcgccc
     1021 gatgatagcg gtgagagtac gtcggtcgga atctgctgcg gccggtcgag ccgcgcgtgg
     1081 cgcttgtgtc gtagtccggt cgtgggttag ggccagcatg cggtggccgg ggtggccagt
     1141 cctaaggctg tccttgatcg tgctggcgtc gtcatggcgg cgcgggggcc tcggaagctg
     1201 gaacaggcga cggcggagtt gttggccgcc gagttgtacc gcgtcgtgcg tgaggaacct
     1261 gaagggttgt ggtttagctg gtggtttgag gagctcgcgg aggccgcggt ggctcggatc
     1321 cgggaggagg cgagcagccg ggacggcgcg tggcagctcc cgtggcgatt gctgcacagt
     1381 ctgacctcga tcggttcacc ggcgcgtgtc cgtacaccgg cgcagcagtg agtaggcgtc
     1441 gggtggagac accaacggtc attccccaca gcgcgccagt ggtgatcacc gggaagcggc
     1501 cgatcgcggc cgccagcagc cgcacgggtg ctccacgcgg ttcccggtcg agagcggctt
     1561 cacatcacca tgacggtccg gatcgacttt tcttctacgg acttcaaaat atccggaact
     1621 tattatttct cgtcggagtc atactgctgg acctcggtgt ggattcgttg gtcgtggtgg
     1681 taggtgcgtt ccttggcgta ggcgtcgtag gctcgatggt cggcttcggt ggcggtagcg
     1741 gtgatcagtc ggcggggatg tagtcgttcc ttgagcacca cattgagctg cgcaccgacc
     1801 aaggtgacga cgctttgcga gtagaaccac gtcaacatgg tgatgacggt ggcgtaactg
     1861 ccgtagatcc tctcggcgtt gtgcaggtat cggaagatga tcagcgagga tagctgctgg
     1921 agcagccaga agacgatgcc tgacagcagt gcacccggta gcacgtcgcg ggtagagacg
     1981 tcacggtcgg tgagcaggcg gaaggccacg atgaacagcc ccacgtctag cgcgacggcg
     2041 atgaggtagc cggcgaggcg agcgaccacg ccgagaccgg tcccggtggc ggtagcggtg
     2101 aggtagctgc tgatcgctgt gctgacgatc aggccgagcg cgatggcgcc cagcgcgaac
     2161 aggccgcgtt tgatctgtgc accgatgctg ggccgctggg caggagggat ctcccacacc
     2221 gagttgaacg ccgactggat cgcgatgacc acgaatgaac cgctccacac cgcgctaagg
     2281 atgccgacca gaagtgtcca ccaccggccg ctcaggcgcc cgatcgagtc cgtgctcagc
     2341 agcgggaaaa agctggctgc gctgcgcagc acgtcacctt gcagcctagg cggcaggaag
     2401 taaccgagca gggtgacaaa gatgagcagc agcggaaaga ccgagaaaaa cgcccagaag
     2461 gcgatcacag cggcgagatt gaccgactcg tcttcgatga acttacgggc cacggc
//
LOCUS       DASVXZ010000042         8912 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_452894, whole genome shotgun sequence.
ACCESSION   DASVXZ010000042 DASVXZ010000000
VERSION     DASVXZ010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8912
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452894"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VF788_00705"
     CDS             <1..220
                     /locus_tag="VF788_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Y4yA family PLP-dependent enzyme"
                     /protein_id="HEX8932722.1"
                     /translation="VGGASCLEYDMVTWRKIPFPRVPRYGDLLVYPNTAGYQMDKNET
                     EFHQIPLPVRVVLSYTESRFQWRLDEWP"
     gene            237..1316
                     /locus_tag="VF788_00710"
     CDS             237..1316
                     /locus_tag="VF788_00710"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020501617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEX8932723.1"
                     /translation="MREVDSRALDNKELGSRPLENIVTRASALIGRTPLFELCSTESG
                     TRLLLKLEQFNPTGSAKVRMAEQMIKDAELRGQLRPGGHIIESTSGNTGLGLALMAIE
                     RGYRFTAVVDHHASTDKLRAMEAMGVELVYVGGDSTTGPSTVERRRVAYELVAAEEGA
                     CLLDQHNNPGNSEGYRELAQELLADVFGDVDYLISPIGTGGSLCGTAKELRRLGSGVM
                     TVGVEPAGSTIFGAPGGKYWQTGSGSPEGFPVGSNVDFSLIDDGVQVTDVNAFAAARV
                     VTRRTGLMIGGSAGGALYLALRRLATLPADSTVVTLVSDAGEKYLDTVFDDRWMRERD
                     LLDPAAEEHVKHLLLRHRMPPRDAP"
     gene            1348..2754
                     /locus_tag="VF788_00715"
     CDS             1348..2754
                     /locus_tag="VF788_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEX8932724.1"
                     /translation="MSATRLLQGYRPLVAVASPIAGIQLAQVALTTTDLVMIGSLGVR
                     AIAAGGLAITLYNQLRTMCVGAVTAVGNLVAGAAGRGEARSGGPQLDERTGDEVRQVV
                     RAAFLVSTLIGLLGGVVLVALSYALTWFGQDSRVLELARPTMMALAPGLVPMLWLNVL
                     RQFAVGMRRPGSLLGVTIVSIAVNAALDGGFAYGWFGFPILGLTGIGLATTIVQLLSF
                     LAFLVILRRDEQLAPLLSIQGWKADAVTVRDILRLGIPISATYGSEAGITSVATLMMG
                     SFGAIALAAHNVVNQLAYIVYQLNIGLSHGSSILVSRAVGQGNRREAGQLARTALTLG
                     AAAMALVGLVYLTVPTWVLRLFLDLHADPMVESLAKTLLFFGVAQQFLKGAQNISVGL
                     LRGLGNTKSGFRITLIGYWAVGTPAMLLFGYVLGFHGPGVWIGLCAGFGATAILLLRR
                     FRKDLSLDESAPAAGAKN"
     gene            complement(2795..3316)
                     /locus_tag="VF788_00720"
     CDS             complement(2795..3316)
                     /locus_tag="VF788_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEX8932725.1"
                     /translation="MEFDVTIEIPKGQRNKYEMDHRSGRIRLDRTLFTATQYPADYGF
                     VDDSLGEDGDPLDALVLVQEPTFPGCLIRCRTVGMFRMRDEKGGDDKVLCVPSADPRM
                     EYLQDIEHLDKFYKLEIQHFFEVYKALEPGKSVEGATWADRTEAEREIRASWQRARDV
                     DAAGREPRQDSAS"
     gene            3460..4953
                     /gene="dacB"
                     /locus_tag="VF788_00725"
     CDS             3460..4953
                     /gene="dacB"
                     /locus_tag="VF788_00725"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HEX8932726.1"
                     /translation="MLGFGGRIGAVLRLPARRGKRVAVIVAVLLLAAVAGIGVGLGVT
                     VLTSRLAAAQEASRLADVVPPPAPVVLHPGLRPAAIDGPIPTSAGVSAVLDPLVAAGG
                     LGSLSGQVVDPASGAVLWQRNPSAALVPGSTAKLLTASAALLALDHQARLRTTVLAGA
                     NPGTVVLRGGGDPTLSAAGQGTATGYPGAARLDDLVSQVRAAARGPISRVLVDVSRYT
                     GDALAPGWLTADVAGGYIAPIEPVMLDGGRADPAEEVSPRAAKPATAAAAELARRLGA
                     DPDTVAVGSAAPGAAVLGEVSSPTVQDLVATALQRSDNVLAETLAREVARRTGAQTSF
                     SGASQAVLDVLRRHGFDVSGATLVDGSGLSTSDSIPATLLTGLLGAAAAPIESTDEVN
                     PGKPSAGPAQQRPTAALRPLLVGLPVAGGSGTLADRYRGPAGGTGRGWVRAKTGTLTG
                     VNSLAGTVLDAEGRVLVFALLSNGPNPVLVRPRLDTLAAALRSCGCH"
     gene            4974..6053
                     /locus_tag="VF788_00730"
     CDS             4974..6053
                     /locus_tag="VF788_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEX8932727.1"
                     /translation="MGQPALDAPQAPRTAPSGATIDWAVAAVTAQRLLPAGPAVPAEQ
                     AAATVRQLREMSVSAETHVRELTGLDDGKPPLAAEVVDRPGWVEAATEGLCRLLADYR
                     IPEGRARRMLATTAGVQVGVALAFLASRVLGQYDPFGGPSEDPGRLLLVAPNVVTVGK
                     SLDVPAQEFQMWVCLHEATHRLQFNAVPWIREHFASQVRSFVAATEDPDTMATMIGRL
                     PAALRGARKGEASDALGMLTLLQNPEQRATLDRLIALATLLEGHADHVMDAVGPSVVP
                     SVALIRQRFTARRQGGGLAERVLRAVLGIDAKLRQYAEGAAFTRHVVDAVGMDGFNTV
                     WTSPETLPTRSEIADPAAWLYRMAG"
     gene            6119..7129
                     /gene="tilS"
                     /locus_tag="VF788_00735"
     CDS             6119..7129
                     /gene="tilS"
                     /locus_tag="VF788_00735"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEX8932728.1"
                     /translation="MSQVRVAVRRFLVAHEVAHKAGTVAVACSGGTDSLALAAATLHC
                     ARRLGVTVHGLVVDHQLQPGSAGVARTAAQVLHRLGCSEVRVLPVTVEGPGGLEAAAR
                     RARYRALRDAAPSGALVLLGHTLDDQAETVLLGLGRGSGPRSMAGMRELDPPWGRPLL
                     GTSRAVTAAACDALELVPWVDPHNADSRFRRVRLRTEVLPLLENVLAGGVAQALARTA
                     EQLQEDLDVLEEQAGELLAAALRYPEAQLGEADPEACLDVTRVPDVTVLDVAALARAP
                     AALRRRVLRRWLLDAGVAELTDAHLRAADDLIGRWSGQGALRLPGAVELVRAQGRLHV
                     SR"
     gene            7188..7742
                     /gene="hpt"
                     /locus_tag="VF788_00740"
     CDS             7188..7742
                     /gene="hpt"
                     /locus_tag="VF788_00740"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEX8932729.1"
                     /translation="MYSGDIASVLVTEEQIRCRIAELAQQVAADFPAEQDKGELLLVG
                     VLKGAVMFMTDFARALPIPVQLEFMAVSSYGSATSSSGVVRILKGLDRDITDRNVLVV
                     EDIIDSGLTLSWLLRNLATRHPATLEVCTLLRKPDAIQIDVPVRYIGFDIPREFVVGY
                     GLDYGERYRDLPYIGTLAPEVYAD"
     gene            8021..>8912
                     /locus_tag="VF788_00745"
     CDS             8021..>8912
                     /locus_tag="VF788_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEX8932730.1"
                     /translation="MDRKKILRNPLLWVVAGLLLYYAFGFLLDDTRGYSQVTTSQALT
                     QLSDHNVKQATLEDKEQRLRLTLDHSVPGVQGTKVLTQYPAQSTDQITQALRDAQISN
                     GWDTKVTQQSLLFQVLIYLIPLGLLLLLLLWMMNNVQGGGNRVLNFGKSKAKQLSKDM
                     PKTTFADVAGADEAVEELEEIKDFLANPGRYQALGAKIPKGVLLYGPPGTGKTLLARA
                     VAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIIFVDEIDAVGRQRGA
                     GLGGGHDEREQTLNQLLVEMD"
BASE COUNT         1407 a         2803 c         3067 g         1635 t
ORIGIN      
        1 cgtgggtggt gccagttgcc tcgagtacga catggtgacc tggcggaaaa tcccgtttcc
       61 tcgggttccc cgttatggag atctgctcgt ctatccgaac actgcaggct accagatgga
      121 caagaacgaa accgaatttc accagattcc gttacccgtc agagtcgtgc tgtcgtatac
      181 cgaaagtcgg ttccaatggc ggctggacga gtggccgtaa ataaggggtc ttgcaggtga
      241 gggaagtgga cagccgcgcg ctggataata aggaattggg cagcaggccg ctggagaaca
      301 ttgtcacccg ggcttccgcg ctcatcggcc gcacgccact tttcgaattg tgctccactg
      361 agtcgggtac tcgcttgctg ctcaaacttg agcaattcaa tcctaccggc tcggcgaagg
      421 tccggatggc tgagcaaatg atcaaggacg cggagctccg cgggcagctc cgaccgggag
      481 gtcacatcat cgagtccact tcgggaaata ctggcctggg actcgccctg atggctatcg
      541 aacgcgggta tcggttcacc gcggtggtgg atcaccatgc cagcacggac aagctccggg
      601 cgatggaggc gatgggggtg gagttggttt atgtgggtgg agacagtacc accggcccga
      661 gcaccgtgga acgcaggaga gttgcctacg aactggtcgc ggcggaagag ggggcgtgcc
      721 ttctggatca gcacaataat cctggcaatt ccgaaggata tcgtgagctc gcccaagaac
      781 tcctcgccga cgtcttcggt gatgtcgact atttgatcag ccccatcggc acgggcggct
      841 cgttgtgtgg caccgcaaag gagctacgtc ggcttggttc cggggtgatg acggttggag
      901 tggaaccggc tggttccact atcttcggtg ctcctggggg aaagtactgg caaaccggca
      961 gtggaagccc cgaaggattt ccagtcggta gcaacgtcga tttctctttg atcgatgatg
     1021 gggtccaggt aacggatgta aatgcctttg ctgctgcccg ggtagtgacc cgacgcactg
     1081 ggttgatgat cggaggttcg gcaggcggcg ccctctacct cgcgctacgg agactcgcta
     1141 cgttgcctgc ggacagtacc gtggtgactc tggtctccga cgccggagag aagtacctcg
     1201 acacggtctt cgacgataga tggatgcgtg agcgggactt acttgatccc gcggccgagg
     1261 agcatgttaa gcatctgctg ctgcgccaca ggatgccacc tcgggacgcg ccgtgagcgg
     1321 tgaggccccc aggacggggc ttttcgtatg agcgctacgc gcttgcttca ggggtatcgg
     1381 ccgctggtag ccgtcgcctc gcccattgct ggaattcagt tggctcaggt ggccctcacc
     1441 actaccgatc tcgtcatgat aggctccctg ggcgtcaggg ccatcgcggc cggagggttg
     1501 gcgatcacgc tctataacca gctccgcacg atgtgcgtcg gagctgtgac ggcggtaggc
     1561 aatctggttg ccggtgcggc gggccgcgga gaggcacgat cgggtggccc gcaactcgac
     1621 gaacgtaccg gggacgaggt gcgccaggtg gtgcgggcag cctttttggt gtccactcta
     1681 atcggtctgc tcggcggtgt cgtgctggtc gcgttgagtt atgcccttac ctggttcggc
     1741 caggactccc gagtgctgga gttggcccgg cctacgatga tggcgctggc ccctggcctg
     1801 gttccgatgt tgtggctcaa tgttctgcgt cagttcgcgg tgggaatgcg gcgtcctgga
     1861 tctttgctgg gggtcaccat cgtgtccatc gcggtcaacg cggccctcga tggggggttt
     1921 gcatatggct ggttcggctt cccgattctg gggttgaccg ggatcgggct cgcaaccacg
     1981 atcgtgcagc tcctgagttt ccttgcgttt ctggtgatcc tacgccgtga cgagcaactc
     2041 gcaccgctgc tttccatcca gggctggaaa gcggacgccg tgaccgtccg tgacatcctc
     2101 cggctgggta tcccgatcag tgcgacctat ggctcggaag cggggatcac gtcggtcgcc
     2161 acactgatga tgggcagttt cggtgcgatc gcgctggcgg cgcacaatgt agtgaaccag
     2221 cttgcctata tcgtttatca actcaatatc ggtctttcgc acggctcgtc gatcctggta
     2281 agccgtgccg ttggacaagg aaaccggcgg gaagctggcc agctagcccg gacagctctc
     2341 actctgggag ctgcggcgat ggctttagta gggttagtat atctgaccgt gccgacgtgg
     2401 gtactgcggc tcttcctgga cttgcatgcc gaccctatgg tggagtcctt agcgaagact
     2461 ctcctgttct tcggagtggc ccagcagttc ttgaagggtg cacaaaacat cagcgtggga
     2521 ttactgcgcg gactcggtaa cacgaagagc gggttccgca tcacgctgat tggttattgg
     2581 gcggtcggta ccccagcaat gttgctcttc ggctacgtgc tgggtttcca cggtccaggg
     2641 gtgtggatag gcctgtgcgc cggcttcggg gccacggcga tactgttgct tcggcgcttc
     2701 cggaaagacc tgagcctgga cgagtcggcg ccggcagcag gcgctaagaa ctgacctgct
     2761 agcaggtggg tatcgctgtg ccggagctga gcggtcagga ggcggaatcc tgtctcggct
     2821 cgcggcccgc tgcgtccacg tcgcgggccc gttgccacga ggcgcggatc tcccgctctg
     2881 cttcggttcg atccgcccaa gtcgcgccct cgacgctctt gcccggttcc agcgccttat
     2941 acacctcgaa gaagtgctgg atctccagtt tgtagaactt atcgaggtgt tcgatgtcct
     3001 ggaggtattc catccgggga tcggcgctcg gcacgcatag caccttgtcg tcaccaccct
     3061 tctcgtcccg catgcggaac atcccgaccg tccggcagcg aatcaggcag cccgggaagg
     3121 tgggctcctg caccagtacc agcgcgtcca gcggatcgcc gtcctcgccg agactgtcat
     3181 cgacgaagcc gtagtcggcc gggtactggg tggcggtgaa cagtgtgcga tccagccgga
     3241 tgcggccgga cctgtgatcc atctcgtact tgttgcgctg acccttgggt atctcgatag
     3301 tgacgtcgaa ttccaccgcg cacccgctcc tcaaccgcca tcgttggctt gctgacaccc
     3361 cgctgggagc atcccagggc tcagcccccc gatcccggtc ggcagtcccg ggatcctcta
     3421 gtttgctctc cggggcgcag cgatgaggag agacgctcag tgttgggatt cggtgggcgc
     3481 atcggtgccg tgctgcgtct gcccgctcgg cgcggtaagc gggtcgcagt aatcgtcgct
     3541 gtcctgctgc tggcggcagt cgcgggcatc ggtgtcggcc tgggggtcac cgtgctgacc
     3601 agccggctcg cggccgcgca ggaggcgagc cggctggctg acgtcgtgcc gccacctgcg
     3661 cccgtggtac tgcacccagg gctgcgccca gccgctatcg atggtccgat ccccacgtcc
     3721 gccggggtga gtgcggtact cgaccctctc gtggcggccg gcggtctcgg ttcgctgtcc
     3781 ggccaggtgg tcgatccagc gtccggggct gtgctctggc aacgaaatcc aagcgctgcg
     3841 ttggtacccg gatcgaccgc caagctgctc accgcctcgg ccgcgctgct ggcgctggat
     3901 caccaggcac ggttgcgcac caccgtgctg gccggggcca atccaggcac tgtcgtgtta
     3961 cgcggtggcg gcgatccgac actgtccgcg gccggccagg gcacggcgac cggctaccca
     4021 ggtgcggccc ggctggatga cctggtgagc caggtccggg cggccgcccg cggcccaatc
     4081 agccgcgtgc tggtcgacgt gagccggtac accggtgacg cgctggcgcc gggctggctt
     4141 accgccgacg tcgccggtgg atacatcgcg ccgatcgagc cggtgatgct cgatggcggt
     4201 cgcgcggatc cagctgagga agtgtccccg cgagccgcca aaccagcgac cgcggcagcg
     4261 gcggagctgg cccggcgcct gggtgccgac ccggacacgg tcgccgtggg cagcgccgcg
     4321 cccggtgccg cggtgctcgg cgaggtgtcc tccccgacgg tgcaggatct ggtggccacc
     4381 gccctgcaac gatcggacaa cgtgctcgcc gagacattgg cgcgggaggt ggcgcgccgg
     4441 accggtgcgc aaacgtcgtt ctccggggca tcgcaggcgg tgctcgacgt gctgcgccgg
     4501 cacggtttcg acgtcagcgg agccacgctg gtcgatggca gcggactgtc gaccagcgac
     4561 tccatcccgg cgacgctgct caccgggcta cttggcgcgg ccgccgcccc catcgagtcc
     4621 acggatgagg tcaacccggg gaagccctcc gctggcccag cccagcagcg acccaccgcc
     4681 gccctgcgac cactgctggt gggcctgccg gtagccggtg gcagcggaac gctggccgac
     4741 cgctaccgcg gcccggcagg tggcaccggc cggggttggg tacgagccaa gaccggcact
     4801 ctgaccggcg tcaacagtct cgccggcacg gtgctggacg ccgaaggaag ggtgctggtc
     4861 ttcgcgttgc tgtccaatgg tcccaatcca gtgttggttc gaccccggtt ggacacgctg
     4921 gctgcggcac tgaggtcgtg cggctgtcat tagtccgcgt taccgtcgtc ggtatgggac
     4981 aacccgcact cgatgcacca caggcaccca ggacggctcc atctggcgcc acgatcgact
     5041 gggcggtcgc cgcagtcaca gcgcaacgtc tgctgccggc cggtcccgcg gtacctgccg
     5101 agcaggccgc ggcgacggtg cgccagttac gggaaatgtc ggtgagcgcc gagacccacg
     5161 tgcgcgagct gaccgggttg gacgacggca agccaccgct ggccgccgag gtcgtggacc
     5221 ggcctgggtg ggtcgaggcg gccaccgaag gcctgtgccg cctgctcgcc gactaccgga
     5281 tcccggaggg tcgggcccgc cggatgctcg ccaccaccgc cggggtgcag gtgggagtcg
     5341 cgctggcgtt cctggcgtcc cgagtgctcg gtcagtacga cccgttcggc ggcccatcgg
     5401 aagatcccgg acggttgctg ctggtagccc ccaacgtggt gaccgtgggc aagagcctgg
     5461 acgtcccggc ccaggagttc cagatgtggg tatgcctgca tgaggcgact caccggctcc
     5521 agttcaacgc ggtgccgtgg atccgcgagc acttcgccag ccaggtgagg tctttcgtgg
     5581 ctgccaccga agacccggac accatggcca cgatgatcgg tcggctgccc gcggcgctgc
     5641 gcggagcccg gaaaggcgag gcgtcggacg cgctcggcat gttgaccttg ctgcagaacc
     5701 ctgagcagcg agcgaccttg gaccggctca ttgcgctggc caccttgctg gaggggcacg
     5761 ccgaccatgt catggacgcg gtcgggccct cggtggtgcc ttcggtagcg ttgatccgcc
     5821 agcggttcac cgcccgccgg cagggcgggg ggctggctga acgggtgctg agggcggtgc
     5881 tgggcatcga tgcgaagctg cgccagtacg ccgagggcgc cgcgttcacc cggcatgtgg
     5941 tggatgctgt cggtatggac gggttcaata cagtgtggac atcaccggaa acgctgccca
     6001 cccgctccga gatcgcggat ccggcggcgt ggttgtatcg catggccggc tgacctcccc
     6061 cgcgcccagc acccagccac acagcgaccg gccacaccgt gcccagccac agcgtgccct
     6121 gagccaggtg cgcgtcgcgg tgcgccggtt cctggtcgcc cacgaggtcg cgcacaaggc
     6181 gggcacggtg gcggtggcgt gttccggcgg caccgactcg ctggcactgg ccgccgcgac
     6241 cttgcactgt gcccggcggc tcggggtgac ggtgcatggc ctggtcgtcg atcaccagct
     6301 gcagccgggc tcggcggggg tggcgcgcac cgcagcacag gtactccacc gcctgggctg
     6361 ctcggaagtg cgagtcctgc cggtcaccgt ggagggtccg ggtgggctgg aggctgccgc
     6421 ccgccgggct cggtataggg cactgcggga cgccgcgccg tcgggggcgc tggtgctact
     6481 cggccacacc ctcgacgatc aggctgagac ggtgctgctc ggactgggcc ggggctcggg
     6541 accccgatca atggcgggca tgcgcgaact tgaccccccc tgggggcgac cactactcgg
     6601 aacatcccgg gctgtcaccg ccgcagcgtg tgacgcgttg gagctggtcc cgtgggttga
     6661 cccacacaac gccgactccc ggttccggcg ggtccggtta cgtaccgagg tgctgcccct
     6721 gctggagaac gtgttggccg gtggggtggc ccaggccttg gctcgcaccg ccgagcagct
     6781 acaagaagat ctcgacgtac ttgaggagca ggcgggcgag ttgctggcag ccgcactgcg
     6841 gtatccagag gcgcagctgg gcgaggccga tcccgaagca tgcttggatg tcacccgtgt
     6901 ccccgatgtc acggtcttgg atgtggctgc gcttgcccgg gcgccggcgg cgcttcgccg
     6961 ccgggtattg cgtcgctggc tgctggacgc tggggtggcc gagctgaccg acgctcacct
     7021 tcgcgctgcg gatgatctca tcggtcgatg gtcggggcag ggggcgctgc gcttgccggg
     7081 cgctgtggag ctggtgcggg cgcaagggag gctgcatgta tcacggtgac gcgcacactc
     7141 cggatgacga cgagtgccgc ggtgccgacc ggtatcccga tgcggacctg tattcgggtg
     7201 acatcgcctc ggtactcgtg accgaagagc agatccggtg ccgcatcgcc gagctcgcgc
     7261 agcaggtcgc cgccgatttt ccggccgaac aagacaaagg tgagctgctg ctcgtcggcg
     7321 tgctcaaggg cgcagtgatg ttcatgaccg acttcgcgcg agcgctgccc atcccggtgc
     7381 agttggagtt catggcggtg tcctcctacg gctcggccac ctcctcctcg ggagtcgtgc
     7441 gcatcctcaa gggcctggat cgcgatatca ccgaccggaa cgtgctggtc gtagaggaca
     7501 tcatcgattc ggggctcacg ctgtcctggt tgctgcgcaa cctggcgacc cggcatcccg
     7561 caacgttgga ggtgtgcaca ctgttgcgta agcccgacgc gatccagatc gatgttccgg
     7621 tgcgctacat cgggttcgac atcccccggg aattcgtcgt cggctatggc ctggactacg
     7681 gtgagcggta ccgtgacctg ccttacatcg gtaccctggc acctgaggtc tacgccgatt
     7741 agcggtttcc tcgccatcta tcggtggtgt aagccgggac gccaagcgct gcaacggcat
     7801 cgatacagtg ctgggacggc accgatacgg ggaggtttat gccgctggcg aagcgtcaac
     7861 tccgcttcat ccacccgccg gcggaccgcc gggtagggtg ggggtaacag gagtgctctg
     7921 ccgtccttcg gtggtatgcc agcaccattg aagctgagca caggcagcat cgatagcaca
     7981 tcagctcagg agggtcgagg ccaccgaggg ccgcagccga atggaccgca agaaaatact
     8041 tcgcaacccg ctgttgtggg tggtagccgg gttgctcctg tactacgcct tcggcttcct
     8101 gctggacgac acccgggggt acagccaggt caccacctcg caggcactga cgcagctgtc
     8161 cgaccacaac gtcaagcagg cgacgctgga ggacaaggag cagcgactgc gcctgacgct
     8221 ggaccactcg gtcccagggg tgcagggcac gaaagtgctt acccagtacc cggcgcagag
     8281 caccgaccag attactcagg ccctgcgcga cgcgcagatc tcgaacggct gggataccaa
     8341 ggtaacccag cagtccctgc tgttccaggt gctgatctac ctcattccac tgggtctttt
     8401 gctgctgctc ctgctgtgga tgatgaacaa tgtccagggc ggcggcaaca gggtgctcaa
     8461 cttcggtaag tccaaggcca aacagctgag caaggacatg cccaagacga cgttcgccga
     8521 cgtcgcgggc gccgatgaag ccgtcgagga actcgaggag atcaaggatt tcctcgccaa
     8581 ccctggtcgt taccaggcgc tcggcgccaa gattcccaag ggtgtgctgc tctacgggcc
     8641 gcccggtacc ggtaagacgc tgctcgcccg cgcggtcgcc ggcgaggccg gggtgccgtt
     8701 ctactccatc tccggttccg acttcgtgga gatgttcgtc ggtgtgggtg cctcccgcgt
     8761 ccgggacctg ttcgagcagg ccaagcagaa cgctccgtgc atcatcttcg tcgacgagat
     8821 cgacgcggtg ggtcgccagc gcggcgccgg cctcggtggt gggcacgacg aacgcgagca
     8881 gacgctgaac cagctgctgg tggagatgga cg
//
LOCUS       DASVXZ010000043         2365 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1615899, whole genome shotgun sequence.
ACCESSION   DASVXZ010000043 DASVXZ010000000
VERSION     DASVXZ010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1615899"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VF788_00750"
     CDS             <1..293
                     /locus_tag="VF788_00750"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX8932731.1"
                     /translation="EMACFDITWRRIDGAVTALHLHAGHRGSQGPRWIDFFNDKHFPG
                     TQNTVSGCVHVQGSHGMSPRDKIQAVIHDPSSFYLNVHSTERPDGAIRGQLG"
     gene            complement(387..1508)
                     /locus_tag="VF788_00755"
     CDS             complement(387..1508)
                     /locus_tag="VF788_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932732.1"
                     /translation="MCSYFSYPAKIWPNGHERAKRQATQAGIGFTELSNGFATCEDPV
                     AVQEICDRLGPGTIAVFVERWLARLPLPFTTKDRDAGYWWETSMRQIEISRTIVFDAP
                     RHARGFFEALVADNLDLGRPHNACDHLQPSHPSGHSGHLPDRDRPSRQRRGDRQRVLQ
                     TLPDQAVPRKTAARCASRPSSTVPVTWAAKPAYPTSTSSRPKAVPATSGSCMLKRVGQ
                     GCVLASPAFERIAHPTVDATGRRTPVLRFGDPRVTALTGALCQTLLAATGFTNKNLRV
                     LIAGLLGSDYRPGQMTYDLRRLRLAGLIRRIPHTNRYQLTPEGIRIAVFYTKTYNRMV
                     VPLTAANQPQTPPELRTALATITRHVDAYATHARRPQTA"
     gene            complement(1539..1958)
                     /locus_tag="VF788_00760"
     CDS             complement(1539..1958)
                     /locus_tag="VF788_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932733.1"
                     /translation="MDEHVALDIQCLDQIYLNAYVPKLQSGAQVVAFLSDHLGYPFPS
                     PALFNQIGQRFRRAMASFAQANDIPRVKFGKDDVGGKLELMRPHLARQAATGVSGVAA
                     IGFQRVWTAYERQTPTGAPQWWFTEADRRVTCYYFYL"
BASE COUNT          455 a          732 c          758 g          420 t
ORIGIN      
        1 acgagatggc ctgcttcgat atcacgtggc gcagaatcga cggtgcggtg accgccctgc
       61 atctccacgc cgggcaccgg ggcagccagg gcccgcgatg gatcgatttc ttcaacgaca
      121 agcacttccc cggaacgcaa aacaccgtct ccggctgcgt ccatgtgcag ggaagccacg
      181 ggatgagccc acgagacaag atccaggccg ttatccacga tccgtccagc ttctatctca
      241 acgtccactc aaccgagcgc ccagacggag cgatccgcgg ccagctgggt tagcgacagc
      301 ggggggaccg gcggaggcag cgctcaatca gcctccgccg gttagcgatc ttcggtctct
      361 gggttcttca catttgtgtc aggttttcag gcggtctgag ggcggcgggc gtgggtggcg
      421 taggcgtcga cgtggcgggt gatggtggcc agggctgttc ggagttcggg tggggtttgg
      481 ggttggtttg ccgcggtgag cgggacgacc atccggttat aggtcttggt gtagaagacg
      541 gcgatgcgga tgccttcggg ggtgagttgg tagcggttgg tgtgggggat gcggcggatg
      601 agtccggcca ggcgcagtcg gcgtaggtcg taggtcattt gtccggggcg gtagtcgctg
      661 ccgagcagtc cggcgatcaa gacccgcagg ttcttgttgg tgaagccggt cgcggcgagc
      721 agcgtttgac ataaggcgcc ggtcagggcc gtgacccgag gatcgccgaa gcgcaggact
      781 ggggtccttc gccctgtcgc atcgacggtg gggtgcgcga tccgctcgaa ggctggactg
      841 gcaaggacac agccctggcc gacccgcttg agcatgcagg atccgctggt tgcaggcacg
      901 gcctttggtc tggagctcgt cgaggttggg taggcgggct tggcagccca ggtcacgggg
      961 actgttgatg acggtctcga tgcgcatcgc gcggccgtct ttctaggtac tgcttgatcc
     1021 gggagtgttt gtagaacacg ttgacgatca ccccgccgtt gtcgcgacgg tcgatcgcgg
     1081 tccggaaggt gcccggagtg tcccgacgga tgcgacggtt gaagatgatc acaggcgttg
     1141 tgcgggcggc cgagatcgag gttgtcggcc accagagctt cgaagaaacc acgggcatgc
     1201 cggggtgcgt cgaacacgat ggtgcgggag atctcgattt gccgcatcga ggtttcccac
     1261 cagtaccctg cgtcccgatc cttggtcgtg aaaggcagtg gaagacgtgc cagccagcgt
     1321 tcgacgaaca cagcgatcgt cccaggacca agtcgatcac agatctcctg cacggcgacc
     1381 ggatcctcgc aggtggcgaa tccgttcgac aactcggtga aaccgatccc agcctgggtg
     1441 gcctgacgtt tggcccgctc atgcccattg ggccaaatct tggccgggta agagaagtaa
     1501 gaacacacct tgataaaagc cggcccgaaa tcagcgtctc aaaggtagaa gtagtagcag
     1561 gtcactcgcc ggtcggcctc ggtaaaccac cactgcggcg cccccgtggg cgtctggcgc
     1621 tcataggcag tccagacccg ctggaacccg atcgccgcca ccccagacac cccggtagcc
     1681 gcctgccggg ccaagtgcgg gcgcatcagc tccagcttgc cgcccacatc atccttaccg
     1741 aacttcaccc gcgggatgtc gttggcctgg gcgaaggacg ccatcgctcg gcgaaaacgc
     1801 tgcccgatct ggttgaacaa cgcaggagac ggaaacggat agcccagatg gtcagacaga
     1861 aacgccacca cctgtgcacc ggactgcagc ttcgggacgt aggcattgag atagatctga
     1921 tccagacact ggatatccag cgccacatgc tcatccaaac atcgttgacc gtcaccaccc
     1981 gcgcgcccat gacgcctctc ccgcatccat ggctacgcag acgatcatgt gctcacccca
     2041 gcgatgacac caccccaacc accctgctag gcggtccgag gcgacgcctc actgctgcaa
     2101 cagtgccacg ccgagtacga acaccacact tcaataccca ccgaccacac agatccctcg
     2161 gccaagccgc cccgctacga gtactccccc agcccgacac caccgatacc aagatcatcc
     2221 gacgtgatcg actcggtggc atcatccacg aatacatgca cgtcgcgtag gacggccggg
     2281 tttcgggcac ccacacggcg tctcgctgga caaagtggtt tggtctatct accgcgtagt
     2341 cgggaagggc cgccctccgc tacta
//
LOCUS       DASVXZ010000044         5767 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_4616, whole genome shotgun sequence.
ACCESSION   DASVXZ010000044 DASVXZ010000000
VERSION     DASVXZ010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5767
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4616"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(296..751)
                     /gene="rplI"
                     /locus_tag="VF788_00765"
     CDS             complement(296..751)
                     /gene="rplI"
                     /locus_tag="VF788_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEX8932734.1"
                     /translation="MKIILTADVPQLGGPGDLVQVKDGYARNYLLPQRLAILATKGAE
                     KQVATIRRAQQARQIRDLDHAREVAGSLSRLGTVSVTGKAARSGGKLFGSVTASDVVD
                     AVRSAGGPLLDKRAVDVGGPIKSTGAYQMTVRLHPEVSVTVPFEVSTAG"
     gene            complement(771..1007)
                     /gene="rpsR"
                     /locus_tag="VF788_00770"
     CDS             complement(771..1007)
                     /gene="rpsR"
                     /locus_tag="VF788_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003949403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEX8932735.1"
                     /translation="MAKPPVRKPKKKICIFCKDKGARIDYKDTGLLRKYISDRGKIRA
                     RRVTGNCSQHQRDVAIAVKNAREVALLPYTSTAR"
     gene            complement(1092..1598)
                     /locus_tag="VF788_00775"
     CDS             complement(1092..1598)
                     /locus_tag="VF788_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009157232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEX8932736.1"
                     /translation="MAGETVITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQS
                     GEWKDGEALFLRCNIWRQAAENTAESLTRGMRVIVSGRLRQRSFETREGEKRTVMEME
                     VDEVGPSLRYATAKVNKATRQGGASGSGGYGSSGGAADDPWSAAPQAGAPAGSGNGAG
                     GFDDEPPF"
     gene            complement(1600..1905)
                     /gene="rpsF"
                     /locus_tag="VF788_00780"
     CDS             complement(1600..1905)
                     /gene="rpsF"
                     /locus_tag="VF788_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEX8932737.1"
                     /translation="MFFMRRYEMMVILDPQLDERTVAPSLDQFLGVIKTQGGSVEKVD
                     VWGKRRLSYEINKHIEGIYVVLDMSCTPAAVAELDRQLSLSESVLRTKVLRRDARKG"
     gene            complement(2077..2766)
                     /locus_tag="VF788_00785"
     CDS             complement(2077..2766)
                     /locus_tag="VF788_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932738.1"
                     /translation="MGVRVAGLSVFDVGAVPTSGTRTFDATPALRDAMGPVAPVCKIS
                     AEPLSPITGPVQGVIAPAMAPLQGTVPVPALGQPASPAPNAAPPAAPAEQPQPAAAPA
                     PALTSPASGPFFGPNMPTDFPFMLGTYNSGLPRFNYAELLSVGRPGALGKLSAGVLTA
                     DLFGSPSVSNGSSGLGKQSAAANDVAAAGRASALPASGVERVALPILVAVLMLAGVTA
                     ALLRSWVLGRR"
     gene            3133..4011
                     /locus_tag="VF788_00790"
     CDS             3133..4011
                     /locus_tag="VF788_00790"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEX8932739.1"
                     /translation="MRIGAHVSDNDPVTAITERNGEAVQFFLSNPQDWKAPRPNPHTA
                     ALLETALEVYVHSPYVINVASLNNRIRIPSRKLVAQHAAAAAAVGARGLVVHGGHVAK
                     GEAAERGFENWRKMFAQQSAQSGSAQGGSALGGFATRILVENTAGGDNAIARRFDSLA
                     RLWDAIGDYDVGFCLDTCHAFAAGEELADVVDRARAITGRIDLVHCNNSRDEFGSARD
                     RHAPLREGTIDPEQLVAVCAAANATVILETDPATQADDIAWLRERLDPSRQGSVKTSS
                     VKTSSVKQPAVRQDSH"
     gene            complement(3977..5533)
                     /locus_tag="VF788_00795"
     CDS             complement(3977..5533)
                     /locus_tag="VF788_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005467064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HEX8932740.1"
                     /translation="MRDRTVRGISDHGCASRGSVADDHLDRASLTPWQRVPPSWTDPL
                     VARASRIVGGPLGRHAVIGRHWFWTPLRVVLLFATITLALGWLIKAPCAQSYRDSAGA
                     LQVDWRDGRQYVAMCYSDTIPLYAVERLDRPGLAGFPYATSWVEHQGQPDEQVRYMEY
                     PVITGMYQWVAAKLTQTWVATARSGWLPTSAPAIVYFNVSALGLTAAWLVTVWALVGL
                     SPRRPWDAALAALSPLVVVHAFTNFDALATALATTGLLAWTRRRPVLAGILLGLGAAT
                     KFYPVLLLGPILLLCVRAGRLRPGLQAIAAAAVAWTAVNLPIAVLFPSGWAEFFRLNN
                     RRPADPDTLYTAVSTFTGWPGFDGVLRAGQIPVTLNLVSAALFVLACGVIGWVALTAP
                     RPPRLGQLGFLVVSAFLLVNKVWSPQYSLWLVPLAVLAIPRWKPVLAWMTVDALLWIP
                     RMAYYLGPDHKGLPIEPFLGAVVIRDTAVLLLMALVLRDIYRPEHDPILGPPAPLVES
                     NGCLGGPLAV"
     gene            complement(5502..>5767)
                     /locus_tag="VF788_00800"
     CDS             complement(5502..>5767)
                     /locus_tag="VF788_00800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932741.1"
                     /translation="PVEQPAPAQTRTRKPRDGSPSATPDPNFDDLGPMPIEPNTKPTK
                     PRRNSCFPFCDSPPPDNNNDNNGNNGTDNPAPADEGQDRPRHF"
BASE COUNT         1085 a         1879 c         1864 g          939 t
ORIGIN      
        1 acgaccgccg ccatcgcgat caaccactac ctgctggagc aggacatcga aaaggccctc
       61 actgaccttc acccggcccc gggctacgtg ctcaggggct gataagcggg cggggcagcc
      121 aggtgtcgtg acggccaagc cagcggcctg agccgcgctg gtgagtcgct gatcgtaggc
      181 aatgaacgcc gtcagctcgt cgctgagcag tatcgctgag gccaggtgaa gggcatcgag
      241 ggtgcgcagc agcggatggc cgatgtcgga ggccggcggt ggttcgattg ccggctcagc
      301 cggcggtgct gacttcgaag gggacggtca cggagacttc cgggtgcagc cgtacggtca
      361 tctggtaggc accagtggac ttgatgggtc cgccgacatc gacggcacgc ttgtccaaca
      421 ggggacctcc cgcggagcgg accgcgtcca caacgtcgga cgcggtgacc gaaccgaaca
      481 gcttgccacc tgatctggcc gccttcccgg tcacggacac ggttcccaga cgcgacagcg
      541 aaccggcgac ttcccgagcg tggtcgagat cccggatttg ccgagcctgc tgggcccgac
      601 ggatcgtggc cacctgcttc tccgcgccct tggtggccag aatggcaagg cgctggggca
      661 gcagataatt gcgggcatag ccgtccttga cctgcacgag atcgccgggg ccgccaagct
      721 ggggaacatc agcagtaagg atgatcttca tcgggttcgc ctcgtcgatg tcagcgtgcg
      781 gtcgaggtgt agggcagcag cgcgacctcg cgagcattct tcaccgcgat cgcgacgtct
      841 cgttgatgct ggctgcaatt accggtgacc cggcgagccc ggatcttgcc gcggtcggag
      901 atgtactttc gcagcaggcc ggtgtccttg tagtcgatac gggcaccctt gtccttgcag
      961 aagatgcaaa tcttcttctt cggcttgcgt actggcggct tagccatgac tgaaatactc
     1021 ctgattgggt cgcgcctgaa ggtaagtgag ctacaggtga tttactacag agctagggac
     1081 ggagatcgga ctcagaacgg cggctcgtcg tcgaaaccgc cggctccgtt tccggatccg
     1141 gctggtgcac ccgcctgtgg tgctgcgctc catggatcat cagccgcccc gcccgaggag
     1201 ccgtagccgc cgctgcccga cgccccaccc tgacgggtgg ccttgttgac tttggcggtt
     1261 gcataacgca atgaaggacc gacctcgtcg acctccatct ccatcaccgt acgcttctca
     1321 ccctcccggg tctcgaacga gcgctgacgc aaccgtccgc tgacgatcac tcgcatgcca
     1381 cgggtaagcg actccgcggt attctccgca gcctgccgcc agatgttgca acgcaggaaa
     1441 agcgcctcgc cgtccttcca ctcgccgctt tgccggtcga aggtgcgcgg cgtcgaggcc
     1501 accgtgaagt tggccaccgc cgccccggag ggggtgaatc gcaattccgg gtcagcggtc
     1561 aggtttccga ctaccgtgat aactgtttcg cctgccacgt cagcccttcc tcgcgtcccg
     1621 gcgaagcacc ttggttcgca gcaccgattc gctgagggag agctgccgat cgagctcagc
     1681 cactgccgcg ggggtacaag acatgtcaag taccacgtag atgccctcga tgtgcttgtt
     1741 gatctcgtag gacagccggc gcttacccca gacgtcgacc ttctcgacgc tgccgccttg
     1801 ggtcttgatc acaccaagga actgatccag cgagggagca acggtgcgct cgtcaagttg
     1861 cggatcgagg atgaccatca tctcgtaacg acgcatgaag aacattcacc tcctgtggac
     1921 tggtcggcca cggactctcc gtggcaggag gaaccagctg agctggcgat ctaggatagc
     1981 aagaggccgc cccacgacga tcgcggggcg gcctcttgga gattcaccgc ggagtcaaac
     2041 tcccggtttg cgcgtcagtt tcagcgttgg gcgcgtttag cggcgtccga gaacccagct
     2101 gcgcagcagg gcagcagtca caccggccag catcagcacc gccaccagga tcggcagcgc
     2161 gacccgctca acaccgctcg cgggaagagc tgacgcgcgg cccgcagcgg cgacatcatt
     2221 ggctgcggcg ctttgcttgc ccagacccga actaccgttg ctcaccgacg gtgaaccgaa
     2281 cagatccgct gtcaacacgc cagccgacag cttgccaagg gctccggggc ggccgaccga
     2341 cagcagctcc gcgtagttga agcggggcag gccactgttg taggtgccga gcatgaacgg
     2401 aaagtcggtc ggcatgttcg ggccgaagaa cggacccgaa gctggtgaag tcaacgccgg
     2461 tgcaggcgcc gcagcgggct gtggctgctc ggcgggcgcc gccggcggcg ccgcattcgg
     2521 tgcgggcgag gcaggctgac ccaaagccgg aaccggcacc gtgccctgca acggggccat
     2581 ggcgggggcg atcactccct ggaccggacc cgtgatcggg gatagcggct cggcgctgat
     2641 cttgcacacc ggagcaaccg gccccatggc atcccgcaat gccggggtag cgtcgaaggt
     2701 ccgcgtcccg ctggtgggca cggcaccgac atcaaaaacc gacaatcctg ctacccggac
     2761 acccacgcgc tgtccaggtt caccacgcac cgtgtccccg cagccgccca ccagcattgg
     2821 tgcgggtgca gcagccgacg tgggtgcagt gatgaaaccg gtggagggtg cagcgagggc
     2881 tgacaagccc cctccgaatg tgctggcagc acacagtaac gtggctgctc cggcaaccgt
     2941 ggtcaccctc gcccgtatcc ccataggtgc ctccgtgtcg ctctgtacct ggttgtgtcg
     3001 ttagagtaac gaccttagag ggtaactgtg acgataacca gcactttcag cagatcgtgg
     3061 ttactctgtg cactcactgt gtactgtccg ggtacaccga tcagcctgaa acggctcctc
     3121 taggctacaa agatgcgcat aggtgcccac gtcagcgaca acgatccagt gaccgcgatt
     3181 acagagcgca atggtgaggc agtgcagttt ttcctctcca acccacagga ttggaaggct
     3241 ccgcggccca atccgcacac cgctgcgctg cttgagaccg ccctggaagt ctacgtgcac
     3301 tcaccgtacg tcatcaatgt ggcctcgctg aacaaccgca tccgcattcc gtcccgcaag
     3361 ctggtagctc agcacgccgc cgcggccgcc gctgtcggcg cgcgcgggct ggtggtacac
     3421 ggcgggcatg tcgccaaggg cgaagctgcc gagcggggtt tcgagaactg gcgcaagatg
     3481 ttcgcccagc agtcggccca aagtggatca gcacagggtg gatcagcact gggtggattt
     3541 gccaccagga tcctggtgga gaacaccgca ggtggagaca acgcgatagc gcggcggttc
     3601 gattcactgg cccggttgtg ggacgcgatc ggcgactacg acgtcggctt ctgcttggac
     3661 acctgccatg cattcgccgc gggagaagag ttagccgacg tcgtcgaccg ggccagggcc
     3721 atcaccggcc ggatcgacct ggtgcactgc aacaattctc gcgacgagtt cggctcggct
     3781 cgagaccggc acgccccatt gcgcgaaggc actatcgatc ccgaacagct agtggccgtc
     3841 tgcgccgcag ccaacgccac cgtcatcctg gaaaccgacc ccgccaccca agccgacgac
     3901 atcgcctggc tgcgcgaacg actggacccg tcgcggcaag gttccgttaa gacaagttct
     3961 gttaagacaa gttctgttaa acagccagcg gtccgccaag acagccatta gattccacga
     4021 gcggagccgg gggaccgagg atggggtcgt gctcggggcg gtagatgtct cgcaggacca
     4081 gcgccatcag taacagcaca gcggtgtcac ggatcaccac ggcgcccagg aacggctcga
     4141 tcggcagacc cttgtggtcg ggaccgaggt aataggccat ccgcgggatc cagagcagcg
     4201 catcaaccgt catccaggcc agcaccggtt tccaccgcgg gattgccagc accgccaggg
     4261 ggaccagcca caacgagtac tgcggactcc acaccttgtt gacgagcagg aatgcgctca
     4321 ccacgaggaa ccccagctga cccagccggg gcggccgggg tgcggtcagg gcgacccagc
     4381 cgatcactcc gcaggccagc acgaacagcg ccgcgctgac cagattgagc gtgacaggga
     4441 tctggccggc acgcagcacc ccgtcgaaac caggccagcc ggtgaatgtc gacaccgcgg
     4501 tgtaaagcgt gtccgggtcg gcggggcgcc ggttgttgag ccggaagaac tccgcccacc
     4561 cggacgggaa cagcaccgcg atgggcaagt tgaccgctgt ccaggcgacc gcggccgcgg
     4621 cgattgcctg cagcccgggc cgtagccggc cagctcgcac gcacagcaac aggatcggac
     4681 ccagtagtaa taccgggtag aacttggtag ctgcgcccag cccgagcaga attccggcga
     4741 gcaccggacg tcgtcgcgtc cacgccagca ggcccgtggt cgccagcgcg gtagccagcg
     4801 cgtcgaaatt ggtgaaggca tgcactacga ccagtggcga taaggcggcc agcgcagcgt
     4861 cccagggtcg tcgcggggac aggccaacca gtgcccatac cgtcaccaac caggcagccg
     4921 tcaaacccaa cgcactgacg ttgaagtaca cgatggcagg agcggacgtc ggcagccagc
     4981 ccgatctcgc cgtcgccacc cacgtctggg tcagcttggc ggcgacccac tggtacatcc
     5041 cggtgatcac cgggtactcc atgtaccgca cctgctcatc gggttggcct tgatgctcaa
     5101 cccatgaggt ggcgtacggg aatccggcca gcccgggacg gtccagccgc tccacggcat
     5161 agagcgggat ggtgtccgaa tagcacatcg ccacgtactg gcggccgtcg cgccagtcca
     5221 cctggagggc gccggcgctg tcccgatagg actgcgcgca cggggccttg atcagccagc
     5281 ccaacgcgag agtgatcgtc gcgaacagca acaccacccg cagcggggtc cagaaccagt
     5341 gccgcccgat caccgcgtgc cggcccagcg gacctcccac gatcctgctg gcccgcgcga
     5401 ccagcggatc agtccaacta ggcggaaccc gctgccaggg cgtcaacgac gcgcgatcaa
     5461 ggtgatcgtc ggcaaccgaa ccacggctgg cgcaaccgtg atcagaaatg ccgcggacgg
     5521 tcctgtccct catcagccgg tgcgggattg tcagtgccgt tgttgccgtt attgtcgttg
     5581 ttgttgtcgg gtggcgggct gtcacagaac gggaagcacg agttgcgccg cggcttggtc
     5641 ggcttcgtgt tcggctcgat cggcatggga ccgaggtcat cgaagttcgg gtcgggagta
     5701 gctgagggcg agccgtcccg tggcttcctg gttcgcgtct gtgccggggc gggctgctcg
     5761 acgggcg
//
LOCUS       DASVXZ010000045         7307 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_988391, whole genome shotgun sequence.
ACCESSION   DASVXZ010000045 DASVXZ010000000
VERSION     DASVXZ010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7307
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988391"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VF788_00805"
     CDS             <1..351
                     /locus_tag="VF788_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932742.1"
                     /translation="RPEDPDIAELQARYVAYHRDRGNDLNIGRSLGLLLEAAGSTIEH
                     YRVSGPVIRLPPGLRGPAWAAREILRAAGAVTDDDLDRWGAAFARLDACPDRPWAAFP
                     TCIAIGRLPEHPRR"
     gene            445..990
                     /locus_tag="VF788_00810"
     CDS             445..990
                     /locus_tag="VF788_00810"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEX8932743.1"
                     /translation="MSELLVVTDMQNGFLREGNLASDQCLAVLPAVRQEVDDALTDGR
                     RVLFTADTHEINDAEFAVFPEHCIRGTREADLVDEFLPLLARDDVLLLRKRRYSALFE
                     TEMEGHLHRFGVDSVRICGVCTDICVLYTTADLRYRDLPVTVAVHATGTFDGPSHAAD
                     AVQEYSLRHLERVLGARLDHG"
     gene            1115..2122
                     /locus_tag="VF788_00815"
     CDS             1115..2122
                     /locus_tag="VF788_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEX8932744.1"
                     /translation="MGQQTHEHGEVASGHASGSEPEGPTELSKRTWWAVLKRMVREFG
                     RDSLTDWAAALTYYSLLSIFPAVIVLTAVLGLLGPSATQTLIDNINTLVPGQGRDVLV
                     TAIKELQRSQGLAGPLAIIGLVGALWSASGYIGAFMRASNAIYEMPEGRPVWKTVPLR
                     VGLTAAVVVLLALCAMGVVATGVVAERAGQMLGIGSTGVLVWDIAKWPALAVLASLAF
                     ALLYWASPNVKQPGFRWLTPGGVLAVVVWVLASAGFAFYVANFGSYNKIYGSLGGVIG
                     FLVWLWISNIAILLGAELDAELARGQRIEAGQPAEQEPFLPPRDTHAMKEQNTPPVKH
                     G"
     gene            complement(2155..2625)
                     /locus_tag="VF788_00820"
     CDS             complement(2155..2625)
                     /locus_tag="VF788_00820"
                     /inference="COORDINATES: protein motif:HMM:NF021599.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2332 family protein"
                     /protein_id="HEX8932745.1"
                     /translation="MLPTIAWRVGLNLSPLDAREPAARRWLQCLVWPEHHDRARTLQA
                     ALDVAVTVKPRIEKGHLVSDLPALMEQAPRDATLVVVHSATLFYLDQSDREAFITLLS
                     RHGGHRVGCEGPDILSQLTNQLPSDIEVDGRFLLSLDDRVLGLAHPHGRTLSWL"
     gene            2708..4189
                     /locus_tag="VF788_00825"
     CDS             2708..4189
                     /locus_tag="VF788_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HEX8932746.1"
                     /translation="MSVAARLMSAFDNSYVRELAGLYEPWQATPAPVPRLLVLNEELA
                     AELGVDADALRAPDGVAVLVGNATPEGASPVAQAYAGDQFGGFVPRLGDGRALLLGEV
                     LDVCGRRRDLHLKGSGRTPFARGGDGKAPVGPMLREYAIGEAMHALGIPTARALAVVA
                     TGDHVARDTMLPGAVLTRVAASHIRVGTFQYAAAHDGPTLVRRLADYAIARHYPDAVG
                     AENPYLAFFESVVDAQASLVARWMLVGFVHGVMNTDNMTISGETIDYGPCAFMDAFDP
                     ATVFSSIDHGGRYAYGNQPRIAQWNLARLVETLLPLFHAETGTAIAAAGDVLQSFSDR
                     YDQYWNHGMRAKVGVADAQRSDGVLIDDLLALLHAQRVDFTSFFRALSSAVRGDAAPA
                     RSLFGEPFAFDAWADRWRAELSSQASDPRAIAEAMDRVNPVYIPRNHQVEEALAAASA
                     GDLGPFGRLLEVLAQPFDERPGLEAYAAPAPPSFGSYRTFCGT"
     gene            complement(4217..5722)
                     /locus_tag="VF788_00830"
     CDS             complement(4217..5722)
                     /locus_tag="VF788_00830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932747.1"
                     /translation="MDPLDLTGYYTYRSFFNRPEPVDDFNKIRFAEGELFLWVAPDGV
                     VQGTLGFPADPFATDKDFMDITGRVTSWSPPALELEGIGRSETGTEEFDYKYQVSVAP
                     TFPDADRQRPGLVGTVLRAKPHGTAAAGFTASLVAVKRDFLRPKDIAGVALIPDAIDM
                     MASRGHRLQHAVWHTVRTQWHKLSADDNAVKEIDARGWWPKRPPFLAAGGLNLENGAG
                     EDFLYMHRRMILMLQEVYANAGVSAPAGWTALPSAAVPQTVYREMATSGAKTFEFDPD
                     ASGDMVPPPAQDDDADRMVKSPAFLNGVMRPLSVLFQSPRFLSAMTLGQLGNLLEFTI
                     HGWIHVRWTHTLYDPETGDAIGRNSLFDIDPKWDDPSNDDLGDFYSSHVHPTFWRLHG
                     WIDDRINDWATANADRITPITVTGVPWFKMDGQLVRVSDPFSWPSHHPHHGPDHDDAE
                     VHVMEEVMALMKNVLEPPTPPSAALGERALSRPRPARLAFRDVLLGISVAL"
     gene            complement(5894..6499)
                     /locus_tag="VF788_00835"
     CDS             complement(5894..6499)
                     /locus_tag="VF788_00835"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8932748.1"
                     /translation="MTTATVCYVAADATNGAVDLLLGISNGDPAAWDEILRKYGKCVS
                     TTVRSFRLQEADALDAMQMTWLRLAENADRVQFPERLGGWLATTARRECLRILRQGKL
                     GPTFTDVAAETVSEPSAGPEQRAIDAYSTRTLQNLIDELSPLRRNLIRLLFTDDPCSY
                     AKIARTAGIPLGGIGPTRARALRHLRNKLDELRWDRESDNR"
     gene            complement(6825..>7307)
                     /locus_tag="VF788_00840"
     CDS             complement(6825..>7307)
                     /locus_tag="VF788_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8932749.1"
                     /translation="TVADRLAQLATQVDGPRAPAAAAHAAALAAEDGAALHAASVQLE
                     QIGVLLPAADAAAQAAAVHTRQDRHGSAHAAAIRAHRLAQACEGARSPALAAVAAPLP
                     LTHREREIVTLAAGGLSNRQIAERLVVSVRTVENHLYRACTKLGTSDRAELAALLHTR
                     "
BASE COUNT         1214 a         2244 c         2486 g         1363 t
ORIGIN      
        1 cgacccgagg accccgacat cgcagaactt caggcccgct acgtcgccta tcaccgagac
       61 cgtggcaacg acctgaacat cgggcgctcc ctcggcttgc tactagaagc ggcgggatcg
      121 accatcgagc actaccgggt cagtgggccg gttattcggc taccaccagg cctgcggggt
      181 cccgcgtggg cagcccgcga aatactccgg gccgccggag cggtcaccga cgatgacctg
      241 gaccgctggg gcgccgcgtt cgcccggctc gacgcctgtc ccgatcgccc gtgggccgcc
      301 ttccccacct gcatcgccat cgggcggcta cccgagcacc cgagaagatg atcattttgt
      361 ggcatttgtg atcttgatgg agaagattgc tactggaagc taggggtcgt cagcatcagg
      421 gcagcatccg aggaggccat ggcggtgtct gagttgctcg tcgttacgga catgcagaat
      481 gggtttctcc gggagggcaa cctggccagc gaccaatgcc tggcggtgct cccggcggtg
      541 cgccaggagg tagacgatgc cctcaccgat ggccgaaggg tgctgttcac cgccgatact
      601 cacgagatca acgacgcgga gttcgcggtg tttcctgagc actgcatccg cggtacccgg
      661 gaggctgatc tggtcgacga gttcctacca ctgctggctc gggacgatgt tctgctcctg
      721 cgcaagcggc gctactcagc actattcgaa accgagatgg agggccacct gcaccgcttt
      781 ggtgtcgact cggtgcggat ctgcggggta tgtaccgaca tctgcgtgct ttacaccacg
      841 gcagacctgc gctaccggga ccttccggtg acggtggcag ttcacgctac cggcaccttt
      901 gacggaccga gccatgcggc cgatgccgtg caggagtact cgctgcggca cctcgagcgt
      961 gtgctcggag cgagacttga tcacggttag accggacgcg agccgcgcaa cgtcccgggc
     1021 tccggcggga gcggttggtc gggtttgtcg tccggcccca tcgggtaact ccgggcacaa
     1081 tcgaccgagg ctggcgtaag agggcgtgga aatgttggga cagcagaccc acgagcacgg
     1141 tgaagtggct tccggacatg cttcgggtag tgagccggag ggccctactg agctgtccaa
     1201 gcgcacgtgg tgggcggtgc ttaagcgcat ggtgcgggag ttcggtcggg atagtctcac
     1261 cgattgggca gccgcgctga cttactacag tctgctgtcg atcttccctg cagtgatcgt
     1321 gctcaccgca gtgctgggtc tgctggggcc ctcagcgaca cagacgctga tcgacaacat
     1381 caacactctg gttcccgggc agggtcggga cgtcctggtc accgcgatca aggaattgca
     1441 gcgctcccag gggctggccg gtccgttggc catcatcggt cttgttggtg cgctgtggtc
     1501 ggcctcggga tacatcggtg cgttcatgcg ggcctcgaac gccatctacg agatgcccga
     1561 gggacgtccg gtgtggaaga cggtgccact aagggtaggc ctgaccgctg cggtggtagt
     1621 tctgctggcg ctgtgtgcga tgggggtagt cgccaccggg gttgtcgccg agcgagcggg
     1681 gcaaatgctc gggatcggct ctaccggtgt gctggtgtgg gacatcgcca agtggcccgc
     1741 gctcgccgtg ctggcgagcc tggcgttcgc cttgctgtac tgggcatctc ccaacgtgaa
     1801 acaaccgggg ttccgttggc tgacccctgg tggtgtgctc gctgtcgtgg tctgggttct
     1861 ggcgtcggcc gggttcgcgt tctatgtggc caatttcggc tcctacaaca agatctacgg
     1921 ttcgctgggc ggggtgatcg gctttctggt gtggctgtgg atctccaata tcgccatctt
     1981 gctgggcgcg gaactcgacg ccgaattggc caggggccaa cgcatcgagg ccggccagcc
     2041 agcagaacag gaaccattcc tgcctccccg cgacacccac gctatgaaag agcaaaatac
     2101 gccgcctgtt aagcatggtt gatcagcaca gctgcgcttg ctcagccagc caggtcagag
     2161 ccagctcaac gtgcggccgt gtggatgagc caggcccaga actcggtcgt cgagggagag
     2221 cagaaaccgg ccgtccactt caatgtcgga gggcagctgg ttagtcagct gggacaggat
     2281 gtcgggaccc tcgcacccga cccggtgccc gccatgccga gagagcaggg tgatgaaggc
     2341 ctcacggtcg gattgatcga ggtaaaacag tgttgcgctg tgcacgacaa ccagcgtcgc
     2401 atccctgggg gcttgctcca tcaacgcggg caggtcgctg acgaggtgac ctttctcgat
     2461 ccgtggcttt acggtgacgg cgacgtccag ggcggcctgg agcgttcggg cccgatcgtg
     2521 atgctcgggc cataccaggc actgcagcca gcgtcgtgcc gccggctcac gcgcatccag
     2581 tggactaagg ttcagtccga cgcgccaggc gatggtggga agcacagtag gcagtggaac
     2641 acggacgctt tggctgtagc agtcactcca ctttggcgcg gcgagcggca ccgttagcct
     2701 cggggttatg agcgtcgctg cccggctgat gtccgctttc gacaactcct atgtgcgtga
     2761 actggcgggt ctgtatgagc cgtggcaagc gacaccggcg cctgtgcccc ggctgttggt
     2821 gctcaacgag gagctggccg cagagctggg tgtcgatgcc gatgcactga gagcacctga
     2881 cggtgtcgcc gtcctcgtcg gcaacgccac gcccgagggg gcgtcgccgg tagcgcaggc
     2941 ctacgccggc gatcagttcg gtgggtttgt gccgcgcctc ggtgatggtc gagcgctcct
     3001 gctcggcgag gtgctcgacg tttgcggacg ccgtcgcgat ctgcacctga agggctcggg
     3061 acgcacgccg ttcgcccggg gtggtgatgg gaaggcaccc gtcggcccga tgctgcgtga
     3121 atatgccatc ggcgaggcga tgcacgcgtt gggcattccc actgcccggg cgctggctgt
     3181 ggtggcgacc ggtgatcacg tcgcgcggga cacgatgctg cccggcgcgg tgctcacccg
     3241 tgtcgcggcg agccatatcc gcgtgggcac gttccagtac gcagcagcgc acgatgggcc
     3301 gacgctcgtg cggcgtctcg ccgattacgc aatcgcgcgt cattaccccg atgcggtcgg
     3361 ggcggaaaac ccgtatctcg cgtttttcga gagcgtcgtt gacgcccaag catcgctggt
     3421 cgctcgctgg atgctcgttg ggttcgtcca cggcgtcatg aacaccgaca acatgacgat
     3481 ctccggcgag accatcgact acggtccgtg cgcgttcatg gatgctttcg accccgccac
     3541 tgtgttcagt tcgatcgatc acggcggccg ctacgcatac ggcaatcagc cgcgcatcgc
     3601 gcagtggaac ctggcgcgat tggtcgagac attgctgccc ctgttccacg ccgagacggg
     3661 tacggcaatt gcggcggccg gtgacgtgct gcagtcgttc tccgaccgtt acgaccagta
     3721 ctggaaccac gggatgcggg ccaaggtggg ggtggcagac gcccaacgat ccgacggtgt
     3781 gctgatcgac gacctgctag cgctgctgca tgcgcagaga gtcgatttca cctcgttctt
     3841 ccgggcgctg tcgtcggcag tgcgcggaga tgcggcaccg gcgcgatcgc tcttcggtga
     3901 acccttcgcc ttcgacgcgt gggcggaccg ttggcgggca gagctgtcgt cccaggcgtc
     3961 tgacccacgg gcgatcgcgg aagcgatgga ccgggtcaat cctgtctaca tcccgcggaa
     4021 ccaccaggtg gaggaagcgc tggctgcggc gagcgccggg gacctagggc cgtttggacg
     4081 gctactcgag gtgctggcgc agccgttcga tgaacgaccc ggtctggagg catatgccgc
     4141 accggccccg ccgagcttcg gctcgtatcg cacgttctgc ggtacgtgac tacgcatcgg
     4201 ggtccacaaa tccgcgctag agcgcgacgc tgatgccaag caggacgtcg cggaatgcca
     4261 gcctcgccgg ccgaggccgc gatagggccc gctccccgag ggcagcggag ggcggcgtcg
     4321 gtggttcaag cacattcttc atgagggcca tcacctcctc catgacatgg acctcagcgt
     4381 cgtcatggtc cgggccgtgg tggggatggt gggagggcca ggagaagggg tcgctgaccc
     4441 tgacgagctg cccgtccatc ttgaaccagg gcacgccggt gactgtgatg ggcgtgatgc
     4501 ggtcggcgtt ggccgtggcc cagtcgttga tccggtcatc gatccacccg tgcaggcgcc
     4561 agaaggtcgg gtggacgtgt gatgagtaaa aatcgcccag gtcgtcattc gaggggtcgt
     4621 cccatttagg gtcgatgtcg aacaagctgt tgcggccgat cgcgtcgccg gtttcgggat
     4681 cgtaaagcgt gtgtgtccag cggacgtgta tccaaccgtg gatggtgaac tcaagcaggt
     4741 tcccgagttg tcccagggtc atcgccgaca ggaagcgggg tgactggaac agcacggaaa
     4801 ggggacgcat caccccgttg aggaaggcgg gtgacttcac catgcggtcg gcgtcgtcgt
     4861 cctgggccgg cggcggaacc atgtcgcctg acgcatccgg atcgaactcg aacgtcttgg
     4921 cgccagaggt cgccatctct ctgtacaccg tctggggcac ggccgcgctg ggcagggcgg
     4981 tccaacctgc cggcgctgat actcccgcgt ttgcgtagac ctcctgcaac atcaggatca
     5041 tcctgcggtg catgtataag aagtcctctc ccgctccatt ctcgaggttg agcccacccg
     5101 ccgccaggaa cggtggccgc ttcggccacc acccccgcgc atcgatctcc ttgaccgcgt
     5161 tgtcatcggc gctgagcttg tgccattgcg tacgcacggt gtgccaaacc gcgtgctgta
     5221 agcggtggcc acgtgaggcc atcatgtcga tcgcgtccgg gatcaatgcg acaccagcga
     5281 tgtctttcgg ccgtaggaaa tcgcgcttga cggcgaccag gctcgcggtg aagcccgcgg
     5341 ctgcggtgcc atgcggcttg gcgcgcagga cggtacctac gagtcccggc cgttgccggt
     5401 ccgcatcggg gaatgtcggc gccacactga cctggtattt gtagtcgaac tcttcggttc
     5461 ccgtctcgga acggccgatg ccctctagct ccagggctgg cggggaccaa ctggttaccc
     5521 ggccagtgat gtccatgaag tccttatcgg tggcgaacgg atcagcgggg aacccgagcg
     5581 tgccctggac aacgccatcg ggcgccaccc acagaaacag ctcaccctcc gcaaagcgga
     5641 tcttgttgaa gtcgtcgacc ggctcaggtc ggttgaaaaa gcttcgatag gtgtagtagc
     5701 cggtgagatc caggggatcc actgttgtct cctcaatctt tgcagcgtgc gctacaggca
     5761 aggagtgagc cgtggtttgc tctgatacat ccgctgttta tgaccacgaa ccttcgagca
     5821 ggagcgccca ccaccgagca caaccggtgg cgccctgagc tggtcccgtg cggtcatccg
     5881 tgttgggcga tggtcatctg ttgtcagact cccggtccca tctcagttcg tcgagcttat
     5941 tccgcaggtg tcgcagggcc cgcgcccgag tgggcccgat tccgccgagc gggattccgg
     6001 cggttcgggc gatcttggcg taggagcagg gatcgtcggt gaacagcagc cgtatcaggt
     6061 tccgccgcag cggtgacaac tcatcgatga gattctgcaa cgtccgtgtg gagtaagcgt
     6121 cgatggcgcg ctgctcggga cccgccgagg gttcggagac agtttctgcc gccacgtcag
     6181 tgaaagtcgg tccgagcttg ccctggcgca gaatgcgcag gcattcgcgg cgagcggtgg
     6241 ttgccaacca tccacctagc cgctcgggga actgcacgcg gtcagcgttt tcggccagcc
     6301 gcagccaggt catctgcatc gcgtcgagcg catcggcctc ctgtagtcga aacgaccgca
     6361 cagtcgtaga aacgcacttg ccatacttgc gaagaatctc atcccaggct gccggatccc
     6421 cgttactgat ccccaacaac agatcaaccg cgccgttcgt ggcgtcggcg gcaacataac
     6481 atacagttgc ggtcgtcatc ggaatcgcga cccttcatga aagttgatgc ccgtcatggc
     6541 ggtgctgcac ttagttggaa attggtgatg attggagctg aactaagaca ctccattcca
     6601 cgaggcctct ggcccggatt cgctgcggct tacaccgtcg aaagcaatcc aagaagtcgc
     6661 cccaatacgc tcacccggat acactgagcc gagcttcgat gaccgctacc cgcagcgctc
     6721 ctgatggttc ctcgctcgct cacctgccga gtgtggtccc cgttcagcgc ggtgacgtga
     6781 gtaatggact actcacctcg gggcgggtgg gtacacagct ggtgtcagcg ggtgtggagc
     6841 agggcggcga gttcggcgcg gtcggaggtg ccgagtttgg tgcaggcgcg gtagagatgg
     6901 ttttccacgg tgcggaccga gaccaccagc cgctcggcga tctggcggtt ggacagccca
     6961 ccggcggcta gggtgacgat ttcccgctct cggtgggtga gtggcagcgg tgccgcgacg
     7021 gcggccagcg cggggctgcg ggcgccttcg caggcctgcg ccagtcggtg ggcgcggatg
     7081 gcggcggcgt gggcggagcc gtgccggtcc tgacgggtgt gcacagcggc ggcctgggca
     7141 gcggcatccg cggccggcaa caaaaccccg atctgttcga gttggaccga ggcggcgtgc
     7201 agcgccgcgc cgtcctcggc agccagggcg gcggcgtgcg cggcggcagc cggggcgcgc
     7261 ggcccgtcca cctgggtggc caactgcgcg agccggtcag ccaccgt
//
LOCUS       DASVXZ010000046         7165 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1708104, whole genome shotgun sequence.
ACCESSION   DASVXZ010000046 DASVXZ010000000
VERSION     DASVXZ010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7165
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1708104"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..626
                     /locus_tag="VF788_00845"
     CDS             <1..626
                     /locus_tag="VF788_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932750.1"
                     /translation="LIAFLATGLSVIIGVTMGVTAAFFGGWVDSFIGRLMDIFLAFPL
                     LVFAIALAGVIPDNAFGLSGDTLKIGVLIFIIGFFSWPYIGRIVRGQALSLREREFID
                     AARSLGARSPRILVTEILPNLAAPILVYSTLLIPANILFEAALSFLGVGVRPPTPTWG
                     GMLSEATHWFQIAPNFMLFPGLAIFVTVLAFNLFGDGLRDALDPRSR"
     gene            691..2370
                     /locus_tag="VF788_00850"
     CDS             691..2370
                     /locus_tag="VF788_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8932751.1"
                     /translation="MLVACGGPSGGGANSGASGGIHNPSGAKGGILRYANSGDWDSLD
                     PADTYYAYTWDFARLYGRPLVTFKPAPGAQGATLVPDLAESLGRSSDGAKTWTYTLRP
                     GVRFEDGTPVTSKDVKYAVERSLDKTTFPNGPTYFNDLLDLQGYTSPYADPDPDKLGL
                     KAIETPDDRTIVFHLRKAFSGFDYLAQVPATIPVPRAKDTGSKYKEHVVSTGPYLFQT
                     NELGKRFTMVRNPQWDPATDPIRRPLPDRITVDLNVNADDVDNRLISGDLDVAIEGAG
                     VGPSAQGRILGYQGLRANTDSASVARLWYTAIKSDVAPLDNIHCRKAVLYAADRTGYQ
                     RAYGGSTGGEIATNILPPVIPGAKRFDLYPSPDHRGDIAKAKDELTQCGQPGGFTTGI
                     SYRSERPKERAAAEALQQSLARAGIKLEIKPYPLGDYYRLYAGKPDYAKSHGLGLLIH
                     GWGADWPEGFGFISQIVDSRVIRATGGNTNLGVKDPAVDQMLDQALLTLDTAAREQIW
                     VGVDRKVMEDAFILPGVWAKGLLYRPPNLTNVFITDGFQMYDYPALGTTRK"
     gene            2379..3389
                     /locus_tag="VF788_00855"
     CDS             2379..3389
                     /locus_tag="VF788_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932752.1"
                     /translation="MGVYIARRMVAAVILLLIVTAATFAVFFLVPRLGGATPEDLASR
                     YVGRTASPEVIHQIAVKLGFTDPIWVQYGRFVKGLLLGADYSTGPTTVHCPAPCFGYS
                     FITQNPVLPDLIDRLPVTMSLAAGGALIWLVAGVSTGVISALRRGSVFDRATMGVALA
                     GVSLPIFFTGLLALAIFSYGLGITAPGGSYVPLEENPLLWAYDLILPWITLAFLYAAG
                     YARLTRAGMLDTMGEDFIRTARAKGLPERTVVLKHGLRSALTPILTIFGLDLGVLLGG
                     AILTESTYSLPGIGKYSVDAVVSNDLPKVLGVVLLGCIFIIVANLVVDLLYAVIDPRV
                     RY"
     gene            3389..4414
                     /locus_tag="VF788_00860"
     CDS             3389..4414
                     /locus_tag="VF788_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8932753.1"
                     /translation="MRPFLDVRDLRVHFPTEDGVVKAVDGLSLQLERGRRLGVVGESG
                     SGKSVTSLSIMGLHPPGSARISGEVWLDGRELVSADAEQVRKLRGRSMAMIFQDPLSA
                     MHPYYTVGQQIVEAYRLHHDVGKQAARSRAVELLDRVGIPQARSRVDDYPHEFSGGMR
                     QRAMIAMALSCNPQLLIADEPTTALDVTVQAQILDLIRDLQAEFDSAVMIITHDLGVV
                     AELADDILVMYAGRAVEYGPASEVFSRPRHPYTWGLLGSVPRWDRERTERLAPIPGSP
                     PSLINVPSGCPFHPRCGYAELTGGQSSTSRPELAQAVPATGHLVACHLPDERRQQVFD
                     DEIRPKL"
     gene            4423..5394
                     /locus_tag="VF788_00865"
     CDS             4423..5394
                     /locus_tag="VF788_00865"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HEX8932754.1"
                     /translation="MRVSGLRKYFPLRRGLLRRKAGAVQAVDGLDFEVRSGETLSLVG
                     ESGCGKTTTGRLVTRLVKPSAGSIIFDGRDITHLTERRMRPLRRDIQMIFQDPYSSLN
                     PRHTVGTIVGAPFRIQGVDPPGGVRSAVQELLELVGLNPEHYNRYPHEFSGGQRQRIG
                     IARTLALRPKLIVADEPVSALDVSIQAQVINLLEDLQDELDLTYLLIAHDLSVVRHVS
                     DRVAVMYLGKVVELGDRNAVYSRPLHPYTVALLSAVPLPDPTRRGKNRRILLTGDVPS
                     PLNPPPACRFHTRCWKAQEICRTQEPPLVELSPGHSVACHFPEIASA"
     gene            5620..6813
                     /locus_tag="VF788_00870"
     CDS             5620..6813
                     /locus_tag="VF788_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEX8932755.1"
                     /translation="MSSDAASAAPLRVLLVEDDEGDAVLVRELLADTAATVELVWAKS
                     LGEAERLWSPNMDCVLLDLQLPDASGLDGLRRLLRRGAVAAVVLTGLDDQQQGVDAVG
                     AGAQDYLVKGQIDGHSLERVIRYAVQRHRAEMVARELSEALLLAAENVRLSRGLLPSP
                     LITDSAVGYAAQYRSGGGRMLLGGDFHDVVQTSDGAMWAVIGDVCGHGPDEAALGVCL
                     RIAWRTLVLAGHPEQEILPMLQQLLIHERHRPMVFTTACMVRITPDRGQAKVWSAGHP
                     LPLLRDGDKEWMEPVVPRKLPLGVVPDCVWSPASVELSSQWELLLYTDGLIEGRSGSG
                     ERNLWVEGLLDLIKEQRAVSGQDPQQLVDGLVETVRRLDPEHTDDVAVVLLSHPSQRA
                     DRDDD"
     gene            6806..>7165
                     /locus_tag="VF788_00875"
     CDS             6806..>7165
                     /locus_tag="VF788_00875"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HEX8932756.1"
                     /translation="MTDSTPQRSRGIWSRWSLRRWLAVIGAICISAAIVAIVAGGLAI
                     AQLSAARWTLVDGLDPALLNAQALSAALVNQETGIRGFAATGNKDFLTPYHQGRQQED
                     AALAILRRLGAVEPRPEL"
BASE COUNT         1108 a         2443 c         2418 g         1196 t
ORIGIN      
        1 tgctcatcgc gttcctcgcg accggactgt ccgtgatcat cggggtcacc atgggtgtca
       61 ccgcggcctt cttcggcggc tgggtggaca gcttcatcgg ccgcctgatg gacatcttcc
      121 tggccttccc gctgctcgtc ttcgccatcg cgctcgcggg ggtcatcccc gacaacgcgt
      181 tcgggctcag cggcgacacg ctcaagatcg gcgtcctgat cttcatcatc gggttcttca
      241 gctggcccta catcggccgg atcgtccgcg ggcaggcgct gtcgctgcgc gagcgtgagt
      301 tcatcgacgc cgcgcgcagc ctcggcgcgc gcagcccgcg gatactggtc accgagatac
      361 tgcccaacct ggccgcgccg atcctggtgt actcgacgct gctgattccc gccaacatcc
      421 tgttcgaggc ggcgctgtcg ttcctcggcg tcggcgtccg cccaccgact ccgacctggg
      481 gcgggatgct gtccgaagcc acgcactggt tccagatcgc gccgaacttc atgctcttcc
      541 cggggctggc gatcttcgtc acggtgctgg cgttcaacct gttcggcgac ggcctgcgcg
      601 acgcgctgga tccccgctcg cgatgaaggg atggcatgcg agatgagcat caatcgccgg
      661 gccgccgggc tggccgcgct tgccgcccta gtgctggtcg cgtgcggcgg tccgagcggc
      721 ggcggcgcca acagcggcgc gtcaggtggc atccacaatc cctccggcgc caagggcggc
      781 atcctgcgct acgccaactc cggcgactgg gactccctcg acccggccga cacctactac
      841 gcctacacct gggacttcgc ccggctctac gggcggccct tggtgacgtt caagccggcc
      901 ccgggagcgc agggcgccac gctcgtgccg gacctcgccg agtcactggg ccgctccagc
      961 gacggcgcca agacctggac ctacacgctt cgcccgggcg tacgcttcga ggacggcacc
     1021 ccggtcacca gcaaagacgt caagtacgcc gtcgaacgct cgttggacaa gaccaccttc
     1081 cccaacgggc cgacatactt caacgatctg ctggacctgc agggctacac cagcccgtac
     1141 gccgatcccg accccgacaa gctcggcctc aaggcgatcg agacgccgga cgaccggacg
     1201 atcgtgttcc acctgcgcaa ggccttcagc ggcttcgact acctcgcgca ggtcccggcc
     1261 accatcccgg tgccgcgggc caaggacacc ggctcgaagt acaaggagca cgtcgtctcc
     1321 accggcccct atctgttcca gaccaacgag ttgggcaagc ggttcacgat ggttcgcaac
     1381 ccccagtggg atccggccac cgatccgatc cgccggccgc tgcccgaccg gatcactgtc
     1441 gatctgaacg tcaacgccga cgacgtcgac aaccggctca tctccggcga cctcgacgtc
     1501 gcgatcgagg gtgccggcgt cgggccctcg gcgcaggggc gcatcctcgg ctatcagggg
     1561 ctgcgcgcga acaccgactc cgcatccgtc gcccggctgt ggtataccgc catcaagtcc
     1621 gacgtcgcgc cgctggacaa catccattgc cgcaaggcgg tgttgtatgc cgccgatcga
     1681 accggttacc agcgtgccta cggcggatcg accggcgggg agatcgccac gaacatcctg
     1741 ccgccagtga tcccgggcgc gaagcggttc gacctctacc cctcgccgga tcaccggggc
     1801 gatatcgcca aggccaaaga cgaactcacc cagtgtggcc agccgggcgg cttcaccacc
     1861 ggcatctcct accgctccga gcggcccaag gagagggccg ccgccgaggc gctgcagcag
     1921 tcgctggcgc gggccgggat caagctggag atcaagccct acccgctggg cgactactac
     1981 cgcctgtacg ccggcaaacc ggactacgcg aagtctcacg gccttggcct gctgatccac
     2041 ggctggggcg cggactggcc cgaaggcttc gggttcatct cccagatcgt cgacagccgg
     2101 gtcatccggg ccaccggagg caacaccaac ctgggggtca aggacccagc agtcgaccag
     2161 atgctcgacc aggcgttgct gaccctcgac accgcggcgc gggagcagat ctgggtgggc
     2221 gtcgaccgga aggtgatgga agacgcgttc atcctgcccg gtgtctgggc caagggcctg
     2281 ctgtaccggc cgccgaacct gaccaacgtg ttcatcaccg acgggttcca gatgtatgac
     2341 tacccggcgc tgggcaccac acggaagtag gcaggccggt gggcgtctac attgctcgac
     2401 ggatggtcgc ggcggtgatc ctgctgctga tcgtcaccgc agcgaccttt gcggtcttct
     2461 tcctggtgcc ccggctgggc ggggccacgc cggaggacct cgcctcccgt tatgtcgggc
     2521 ggaccgcatc acccgaagtg atccaccaga tcgcggtgaa gctcgggttc accgacccga
     2581 tctgggtgca gtacggccgg ttcgtcaagg gtctgcttct cggcgcggac tacagcaccg
     2641 gcccgaccac ggtgcactgc ccagcgccgt gcttcgggta ctccttcatc acccagaacc
     2701 cggtgctgcc cgacctgatc gaccggctgc cggtgacgat gtcactcgcg gccggcgggg
     2761 cgttgatctg gctggtcgcc ggggtatcta ccggcgtgat ctccgcgctg cgccggggca
     2821 gcgtgttcga tcgagccacg atgggcgtcg ccctggccgg cgtgtcgctg ccgatcttct
     2881 tcactgggct gctggctttg gcgatcttca gctacgggct gggtatcacc gccccggggg
     2941 gtagctacgt acccctcgag gagaacccgc tgctctgggc gtacgacctg atcctgccgt
     3001 ggatcacgct ggcgttcctc tacgccgccg gttacgcgcg gctgaccagg gcgggcatgc
     3061 tcgacacgat gggcgaggac ttcatccgga ccgcccgcgc caaggggctc ccggagcgca
     3121 ccgtggtgct caagcacggg ctgcgttccg cgctcacccc gatcctgacg attttcggat
     3181 tggacctcgg ggtgctcctg ggtggcgcga tcctcaccga gagcacgtac tcgctgcccg
     3241 gtatcggcaa gtactcggtg gacgcggtgg tcagcaacga cctgcctaag gtgctgggag
     3301 tggtgctcct cggctgcatc ttcatcatcg ttgccaacct cgtcgtggac ctgctgtacg
     3361 cggtgatcga cccgagggtg cgctactgat gcgcccgttc ctggacgtgc gtgatctgcg
     3421 ggtgcacttc ccgaccgagg acggcgtggt caaagccgtg gacgggctgt cgctgcagct
     3481 cgagcgcggt cgccggctcg gggtggtcgg ggagtcgggc tcgggcaaga gcgtgaccag
     3541 cttgtcgatc atgggcctgc acccgccggg cagcgcgcgg atctccggtg aggtctggct
     3601 cgatggccgg gagctggtct cggccgacgc cgagcaggtc cgcaagctgc ggggccggag
     3661 catggcgatg atcttccaag atccgctgtc cgccatgcac ccgtactaca cggtgggtca
     3721 gcagatcgtc gaggcgtacc ggctgcacca cgacgtcggc aagcaggccg cgcgcagccg
     3781 cgccgtggag ctgctggatc gggtcggcat cccgcaggcg cgctcgcgcg tcgatgacta
     3841 cccgcacgag ttctccggcg gcatgcggca acgcgcgatg atcgcgatgg cgttgtcgtg
     3901 taacccccag ctgctcatcg ccgacgagcc gacgaccgct ctggacgtga cggtgcaggc
     3961 ccagatcctc gacctgatcc gcgacctgca agccgagttc gactcggcag tgatgatcat
     4021 cacgcacgac ctgggtgtgg tcgccgagct tgctgacgac atcctggtga tgtacgcggg
     4081 acgtgccgtc gagtacgggc cggcgagtga ggtcttctcc cgtccccggc acccctacac
     4141 gtggggcctg ctcggctcag ttccgcgctg ggatcgcgag cgaacggagc ggctggcgcc
     4201 gatcccgggc agcccgccaa gcctgatcaa cgtcccctcc ggttgcccgt tccacccgcg
     4261 ttgcggctac gccgagctga ccgggggcca gtcgagcacc agccgtcccg agctggcgca
     4321 ggctgtgccc gcaacggggc acctggttgc ctgccacctc cccgacgagc gtcggcagca
     4381 ggtctttgac gacgagatcc ggccaaagct gtgacggcgc tgatgcgcgt ttcggggttg
     4441 cgaaagtact tcccgctccg gcggggcctg ctgcggcgca aggccggagc cgtccaggcc
     4501 gtcgacggtc tggacttcga ggtgcgcagc ggggagacgc tgtcgctggt gggcgagtcg
     4561 ggctgcggca agaccaccac cgggcggttg gtcacccggc tggtcaagcc cagtgccgga
     4621 tcgatcatct tcgacgggcg cgacatcaca cacctgaccg agcgccggat gcgcccgctg
     4681 cgccgggaca ttcagatgat ctttcaggac ccgtactcat cgctgaatcc acggcatacg
     4741 gtcggcacca tcgtcggtgc cccgttccgg atccagggcg tggatccccc cggcggggtg
     4801 cggagcgcgg tgcaggagct actcgagctc gtcggcctga accccgagca ctacaatcgc
     4861 tacccgcacg agttctccgg cggccagcgc cagcgcatcg gcatcgcccg cactctcgcg
     4921 ctgcggccca agctgatcgt ggccgacgaa cccgtctcgg cactggacgt gtccatccag
     4981 gcccaggtga tcaacctgct ggaggacctg caggacgagc tggacctgac ctacctgctg
     5041 atcgcccacg acctgtcagt ggtgcgtcac gtgtccgatc gcgtcgccgt catgtacctc
     5101 ggcaaagtcg tcgagctcgg tgaccgcaac gccgtctatt cccggcctct gcacccctac
     5161 acggtggccc tgctctccgc ggtgccccta cccgatccca cccggcgcgg caagaaccgc
     5221 agaatcctgc tcaccggcga cgtgcccagc cctctgaacc cgccgccggc ctgccggttc
     5281 cacacccgct gctggaaagc ccaggagatc tgccggaccc aggaaccgcc gctggtcgag
     5341 ctgtcccccg gccacagcgt ggcctgtcat ttcccggaga tcgcatcagc ctgaatgctg
     5401 gtcaacgtac gagctgatca cagccagcca cgcggtcact acctttgcga gatgcacacc
     5461 cctcgccgga tggccagctc gagtcagaga gacaccgcct gtacggtttc tcggctggtg
     5521 ccgccaccag acgtcgccga cgtacgcgga ctcaggcaga gtgggcggaa gggatgcgcc
     5581 ggcgactggg tcggcagtag agcgcagaat gggtggtgga tgagctcaga cgcagcatca
     5641 gctgcgccgc tgcgggtact gctcgtcgag gacgacgagg gcgacgccgt gttggtgcgg
     5701 gagttgctgg ccgacaccgc agcaacggtg gagctggtat gggcgaagtc gctaggcgag
     5761 gccgagcggc tgtggtctcc gaacatggac tgcgtgctgc tggatttgca gcttcccgat
     5821 gcgagtgggc tggacgggtt acgccggctg ctgcggcgcg gcgcggtcgc ggcagtcgtg
     5881 ctgaccggcc tggatgacca gcagcagggt gtggacgcgg tgggcgctgg cgcgcaggac
     5941 tacctggtga aggggcagat cgacgggcac agcttggaac gggtgatccg ctatgcggtg
     6001 cagcggcacc gggccgagat ggtcgccagg gagttgtcgg aggcgctgtt actggcggcc
     6061 gagaacgtcc ggctcagccg gggactgctg ccgtccccct tgatcaccga ttcagcagtg
     6121 ggttacgccg cgcagtaccg gtccggtggc ggtcgcatgc tgctgggcgg agacttccac
     6181 gacgtcgtgc agaccagcga cggggcgatg tgggcggtga tcggggacgt ctgcgggcac
     6241 gggccggacg aggccgcgct gggggtctgc ctgcgtattg cgtggcggac cttggtgctg
     6301 gccgggcacc cggagcaaga gatcctgccc atgctgcaac agttgctgat tcatgagcgg
     6361 caccggccga tggtgttcac cacggcctgc atggtgcgga tcacccctga ccgcggccag
     6421 gcgaaggtgt ggtccgccgg gcatccacta ccgctgctgc gcgatggtga caaggaatgg
     6481 atggaacccg tggtaccgcg caagctgccg ttgggtgttg tgccggactg tgtctggtcg
     6541 cctgccagtg tggagctcag ctcacagtgg gagcttctgc tctataccga cgggctcatc
     6601 gagggccggt ccggatccgg cgagcggaat ctgtgggtgg aagggctcct ggacttgatc
     6661 aaagagcagc gggcggtgtc cggtcaagac ccgcagcagc tggtggacgg gctggtcgag
     6721 actgtccgcc ggcttgaccc cgagcacacc gatgatgtgg cggtggtgtt gttgtcccac
     6781 ccgtcgcagc gcgcggaccg agacgatgac tgactcaacg ccgcaacgtt cacgcggcat
     6841 ctggagccgc tggtcgttgc ggcgctggct ggcggtgatc ggggcgatct gtatcagtgc
     6901 cgccatcgtg gcgatcgtgg cgggcgggct ggcaatcgca cagctcagtg cagcccgctg
     6961 gacgttggtc gacggactcg acccggcatt gctcaatgcg caggcactgt ccgcggcgct
     7021 ggtcaaccag gagaccggaa tccgcggctt tgccgccacc ggcaacaagg acttcctgac
     7081 cccctaccac cagggccgcc agcaggaaga cgccgcactg gccatcttgc gccgcctcgg
     7141 cgccgtcgaa ccacgccctg agctg
//
LOCUS       DASVXZ010000047         2244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1078188, whole genome shotgun sequence.
ACCESSION   DASVXZ010000047 DASVXZ010000000
VERSION     DASVXZ010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1078188"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..1718)
                     /locus_tag="VF788_00880"
     CDS             complement(36..1718)
                     /locus_tag="VF788_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8932757.1"
                     /translation="MTILQQEDCVAAIRGAIVLDEVLVVGAGPVGLTVGIELLRRGVP
                     CRVIDRLVEAPQYAKAVGVQPRTLEVWENLGLLRDALDAATPLRGQLVYANGEQVAQM
                     DLAVPPDVPYGFVTLPQFVTERLLTDRLHQFGGHVERGVELVAFEPDSEGVTARLRAA
                     DGEQEVRVGYLVGADGAHSRVRKGLGLDFAGDAFAEQYMLGDVEVEWSLPTGYAIRSS
                     HQSDGRIDVLVCIPLPGTGRYRMSMLVPDDLATTPAQGEVAHGLETGPAPQLHHIQAV
                     LDRLSPEPARAHTLRWSSVFRISHRLADRYGQGRVFIAGDAAHIHPPTGAQGMNTGIQ
                     DGVNLAWKLALAVQGAAAEELLASYQAERHSVGEEVVGRTVRHAREGFEADPDDPLTV
                     IRREAQLLVHYRDSPLVGDGGGCSSGPLPGERAPDCRGLCRAAVSHPLRLFELLAHPH
                     HTLLLYADDLAQLPAFTELAQLANALTGGRMRTYLIGAVTSTRLDGNSLPLIVDAAGE
                     YQAAYGAIGGNGYLVRPDGYVGFRAAPLTCAGLRSHLEGVFAAQPVPWAGVS"
BASE COUNT          419 a          763 c          724 g          338 t
ORIGIN      
        1 gaagagtggg ttgctccgac caccgccagg ccgggtcatg acacacctgc ccacgggacg
       61 ggctgggcag cgaacacacc ctccagatgg ctgcgcaaac cggcgcaggt cagcggtgcc
      121 gcgcggaagc cgacatagcc atcaggtcgc acgaggtagc cgtttcctcc gatcgcgccg
      181 taggcggcct ggtactcacc ggccgcatcg acgattaacg gcagcgaatt gccgtcgagg
      241 cgggtcgacg tgacggcacc gatcagatag gtcctcatcc ggcccccggt cagggcgttg
      301 gcgagctgcg caagctcggt gaacgccggc agctgcgcga ggtcgtcggc gtagagcagc
      361 agcgtgtggt gcgggtgggc cagcagctcg aacaaccgca gcgggtggct caccgcggcg
      421 cggcacaggc cacggcagtc cggggcgcgc tccccgggca gcgggccact cgagcagccg
      481 ccgccgtcac cgaccagcgg gctgtcacga tagtgcacga gcagttgcgc ctcacggcgg
      541 atcaccgtca aggggtcgtc cgggtcggcc tcgaagcctt cgcgggcgtg acgcaccgtg
      601 cgcccgacga cttcctcgcc gacggagtga cgctcggcct ggtaggaggc caacagctcc
      661 tcagcggcgg cgccctgcac ggccagcgcg agtttccagg ccaggttgac gccgtcctga
      721 ataccggtgt tcatgccctg ggcgccggtc ggcgggtgga tgtgggcggc gtcaccggcg
      781 atgaagaccc gcccctggcc gtagcggtcg gccagccggt ggctgatccg gaacaccgag
      841 gaccagcgca gcgtgtgcgc gcgggccggt tccggcgaaa gacgatcgag gaccgcctgg
      901 atgtggtgca gttggggagc cggaccggtc tccaggccgt gcgcaacctc accttgggcc
      961 ggtgtggtgg cgaggtcgtc gggcaccagc atcgacatcc ggtagcggcc ggtcccgggc
     1021 aacggaatgc acaccagcac atcgatccgg ccgtcgctct ggtggctaga ccggatcgcg
     1081 tagccggtgg gcagcgacca ctccacctcc acgtcgccga gcatgtactg ctccgcaaag
     1141 gcatcaccag cgaagtcgag ccccaaaccc ttccggaccc ggctgtgggc cccgtcggca
     1201 ccgaccaggt agccgacccg cacctcctgc tcgccgtccg cggctcgcag acgggcggtg
     1261 accccctcgg agtccggctc gaacgcaacc agctcaaccc cgcgttcaac atgacccccg
     1321 aactggtgca accggtcggt gagcagccgc tcggtgacga attgcgggag cgtgacgaac
     1381 ccataaggaa catccggcgg caccgccaga tccatctgtg cgacctgttc cccgttcgca
     1441 tacacgagct ggccacgaag cggagtagcg gcatccagag catcgcgcag cagaccgagg
     1501 ttctcccaca cctccagcgt gcgcggctga acacccacag ccttggcgta ctgcggcgct
     1561 tcgaccagcc ggtcgatgac ccggcacgga actcctcgac gcaacagttc gatgcccacg
     1621 gtcaagccga ccggacccgc tcccaccacc agaacctcat ccaagacgat ggcccctcgg
     1681 atagcagcaa cacaatcctc ttgctggagg atggtcactc gaagggaacc gccgaacact
     1741 tctgttgtca atggctagag gcatgagcgc gaacctagcc tgcgggtcgg tcatggcgag
     1801 gggcaatgat tttgccgagc gggcaagcca gcgcgattct ttcctacagg gatccagggg
     1861 catgtggtta ggctgccgtg cctgccgagt cgatcagcgg acgtcacgcc gatcggacct
     1921 acggagaaag gtaaatctga tcccacaggc gaatcagctc agttgcgttg aacagttcga
     1981 tgatttcgtc cagagcaccc tttacgagca cgatctcgta cagatcgcgt caccggtccg
     2041 agtcagcaag atccactgaa cctcacgtga attgggtcca gaacagagca gtctaggggg
     2101 aagaccaaca ctgctctggg atgatcctcg tcgctcgtca agtaaatgcg cacttctctc
     2161 tgcgctcgcg tcgctgtccg aaatacccgc ttgcagttcg ctcaatcaac aacgcgcgcc
     2221 cggcaccgtc accgcccggc cggc
//
LOCUS       DASVXZ010000048         2427 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_363681, whole genome shotgun sequence.
ACCESSION   DASVXZ010000048 DASVXZ010000000
VERSION     DASVXZ010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363681"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1693
                     /gene="arc"
                     /locus_tag="VF788_00885"
     CDS             <1..1693
                     /gene="arc"
                     /locus_tag="VF788_00885"
                     /EC_number="5.6.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020635153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="proteasome ATPase"
                     /protein_id="HEX8932758.1"
                     /translation="VTLLRRRLTESPRNVRLLEERLAEASASVAQLTERNAKLVETLR
                     EARSQLLALREEVDRLAQPPSGYGVFLGGFEDSSVDVFTSGRRMRVAVSPAVEVPQLR
                     RGQSVRLNEALTVVEAGTFESTGEVCALREVLDCGTRALVVGHADEERVVWLADPLLP
                     SPDNPDAVPLKPGDSLVVDTKAAYAYERVPKAEVEDLVLEEVPDVGYEDIGGLSNQIE
                     QIRDAVELPFLHADLFREYELRPPKGVLLYGPPGCGKTLIAKAVANSLAKKVAQVRGD
                     SEAKSYFLNIKGPELLNKYVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR
                     GSGVSSDVETTIVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIE
                     RPDAEAARDVFSKYLTATLPLHGDDLAEFGHDRRACIQAMIQGTVERMYAESEENRFL
                     EVTYANGDKEVLYFRDFNSGAMIQNIVDRAKKKAIKSVLETGQPGLRMTHLLDSIVDE
                     FAENEDLPNTTNPDDWARISGKKGERIVYIRTLVTGKNAESGRAIDTATNTGQYL"
     gene            complement(1800..1981)
                     /locus_tag="VF788_00890"
                     /pseudo
     CDS             complement(1800..1981)
                     /locus_tag="VF788_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987948.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
     gene            2160..>2427
                     /locus_tag="VF788_00895"
     CDS             2160..>2427
                     /locus_tag="VF788_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005150861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome accessory factor PafA2 family
                     protein"
                     /protein_id="HEX8932759.1"
                     /translation="MRRIMGTEVEYGISVPGDSTANPVLTSTQVVLAYAAAAEVPRAK
                     RARWDYEVESPLRDARGFDLGVPGLAQPDPELDDLGAANVILTNG"
BASE COUNT          466 a          752 c          799 g          410 t
ORIGIN      
        1 ggtgacgctg ctgcgccgcc gcttgaccga gtccccccgg aacgtccggt tgctagagga
       61 gcgcctcgcc gaggcctccg catcggtggc ccagctcacg gagcggaacg ccaagctggt
      121 agagacgctg cgggaggcgc gcagccagct gctggcgctg cgggaggaag tcgatcggct
      181 ggctcagcca cccagtggct atggcgtgtt cctgggcggc ttcgaggaca gctccgtgga
      241 cgtgttcacc tccggccgcc ggatgcgagt ggcagtatca cccgccgtgg aggttccgca
      301 gttgcgtcgc gggcagagtg tgcggctcaa tgaagcgctg accgtggtgg aggcaggcac
      361 ctttgagtcc accggtgagg tctgcgcact gcgcgaagta ttggattgcg gcacgcgggc
      421 gctggtcgtg ggtcacgccg acgaagagcg cgtggtgtgg ttagcggacc cgctgctccc
      481 gagtccggac aaccccgacg ccgtgcctct caagccgggt gactccctgg tggtggacac
      541 caaagccgct tacgcctacg agcgggtgcc taaggccgag gtcgaggacc tcgtgctgga
      601 ggaggtgccc gacgtcgggt acgaggacat cggtgggctg tccaaccaga tcgagcagat
      661 ccgcgacgcc gtggagttgc cgttcctgca cgccgatctg ttccgcgaat acgagctgcg
      721 cccacccaag ggcgtgttgc tctatgggcc gcccggatgc ggaaagactc tgatcgccaa
      781 ggcggtggcc aattcactgg ccaagaaggt ggcccaggtc cgcggggaca gcgaggccaa
      841 gagctacttc ctcaatatca agggccctga gctgctcaac aagtatgtcg gcgaaaccga
      901 gcggcatatc cggttgatct ttcagcgggc cagggagaag gcatcggagg gcacgccggt
      961 catcgtgttc ttcgacgaga tggattcgat cttccgcacc cgcggatcgg gcgtgtcatc
     1021 cgatgtggag accacgatcg tgccgcagct gctcagtgag atcgacggcg tcgaggggct
     1081 tgagaacgtc atcgtgatcg gtgcctccaa ccgcgaggac atgatcgatc cggcgatcct
     1141 gcgccccgga cggctcgacg tgaagatcaa gatcgagcgt ccggacgctg aggcggccag
     1201 ggatgtcttc tccaagtacc tgaccgcgac acttccgctg catggtgacg acctcgccga
     1261 gtttgggcac gatcggcgcg cctgcatcca ggcgatgatc cagggcacgg ttgagcggat
     1321 gtacgccgag agcgaggaga accgtttcct cgaggtcacc tacgccaacg gtgacaaaga
     1381 agtcctgtac ttccgggact tcaactcagg cgcgatgatc cagaacattg tggaccgggc
     1441 gaagaagaag gccatcaagt cggtactgga gaccggtcag ccgggtttgc ggatgaccca
     1501 cctgctcgac tcgattgtcg acgagttcgc cgagaatgag gacctaccga acaccaccaa
     1561 cccggacgac tgggcgcgga tctcgggcaa gaagggtgaa cgcatcgttt acatccgtac
     1621 cctggtcacc ggcaagaacg ccgagtccgg ccgggccatc gacaccgcca ccaacaccgg
     1681 ccagtacctg tagcagtccg tccgcattca gcgggctcag cggggtttgc gcgcatcgaa
     1741 taaccccgcc gagcccgctg aatgccctcc gatcgccaag gtaggtggat caggctctcc
     1801 gcggtcaccg acgagtcgac caactcggta ccggtcacca gacgtcctga aacaccattg
     1861 aagcgaccac gcaccttgct gaccatcatg tgccgcacgg agaacgagac gtccgaatgc
     1921 gcggcgtcta tgtccacgtg ccggcgacat acccgggaat cgaagttgta gcagcagtca
     1981 ttgtgaaacc tcctccgttt gagggacccc cgcgcggtgt tccgcggtcg taccatcaca
     2041 acaacttgaa ggttcaatat ttccgatgtg aggtagctta cgtggttgcg aagccgccac
     2101 agggctatat gccgggcagc cagcggactc agccggctcc gggcacgtac ccttcgggta
     2161 tgcgcaggat catggggacc gaggtggaat acggcatctc ggtgcctggg gacagcactg
     2221 ccaacccagt tctgacctca acacaggtcg tactggccta cgccgcggcg gccgaggtgc
     2281 cgcgagccaa gcgtgcccgg tgggactacg aggtggagtc cccactacgg gacgcccgtg
     2341 ggttcgatct tggagtgccg ggcctcgcac agcccgaccc ggaactggac gatctcggcg
     2401 ccgcgaatgt catcctcacc aatggcg
//
LOCUS       DASVXZ010000049         2787 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1708292, whole genome shotgun sequence.
ACCESSION   DASVXZ010000049 DASVXZ010000000
VERSION     DASVXZ010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2787
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1708292"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VF788_00900"
     CDS             <1..195
                     /locus_tag="VF788_00900"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8932760.1"
                     /translation="EFLAQMLGVRRPTISEIASRLQSQGLIRYTRGVITICDRPQLER
                     TTCDCYLIVKAEYDHLAQTE"
     gene            622..1968
                     /locus_tag="VF788_00905"
     CDS             622..1968
                     /locus_tag="VF788_00905"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmpG family muropeptide MFS transporter"
                     /protein_id="HEX8932761.1"
                     /translation="MTFAESHRRSTPEAKPLSRPAGRRRLAVFAVYREPRLFIIFMMG
                     FASGLPLALTGATLAIWLTELRLSLTSIGLFAMLGVPYNLKFVWSPLIDRVQIPVLTR
                     RLGRRRSWLLVVQLALLSALVALGVTQPEKAPLWTALAALVVAFLSASQDVVIDAYRI
                     ETAREHEQGAAAAMTQYGYRLGMLASGAGALFLAALLPWSWVYAAMAGLFSIGVLTTI
                     LAPEPKASVVAAPNADLLGRLREAVVAPFVEFLRRQGVAVAVLVLTFIVLYSLGDAFA
                     GTMANPFYLKVGFSKVEIATVTKAFGLGATLTGVFLGGLAVGRYGVMKALLVCGICQA
                     LSNLMFAAQALAGHDVRVLVFTVAIESLTGGMASAAFVAYLSVLCNVAYTATQYALFT
                     SFMAVGRTFLASTSGWVADHMAWVQFFLISTLLTLPGLAILGWMMHRFPADRPELS"
BASE COUNT          486 a          951 c          831 g          519 t
ORIGIN      
        1 gaattcctcg cccaaatgct gggagtacgc cgcccgacaa tctcggagat cgccagccga
       61 cttcaatccc aagggctgat ccgttacacc cgcggagtga tcaccatatg tgatcggccc
      121 caactcgaac gcaccacctg cgactgctac ttgatcgtca aagccgaata cgaccatctc
      181 gcccaaaccg aataacaaca gcagctacac acccttcgaa cagcaatggc tgccactgcg
      241 ccggacctgt ggtcacgcta gctgcatcag gcccactggc ggagcgttac cagcttgcgc
      301 accgtcttat cctctggcgg gcagcacact gcgtgcatcg ggtgatctcg gttcgtgccc
      361 ctcgcgtgcc cgttgccagg ggactcacgg ggaaccacgg acaacaacgg tcacaatctc
      421 actgactgtg cccaagaaga gttccttgct cacaaaccgt tatggcccgg acctgcaagg
      481 aggtgctccg atgcgcttga ctgctgaaca gtactccctc ctccgtgtcg cgttaatgtc
      541 cctcgccacc ggtactgact ggaggtgggg catggctgag gtcacggttt gtgaggctct
      601 cctcggagct gagcttgcgc aatgacattt gcggagtcgc atcgtcggag cacccccgag
      661 gctaagccgc tgtcgcgccc ggctggacgc agacggctcg ccgtcttcgc cgtctaccgc
      721 gagccccggc tgttcatcat ctttatgatg ggcttcgcca gcgggttgcc cctggcgctg
      781 accggagcga ccctcgccat ctggctgacg gaactgcggc tgtcgctcac ctcgatcggc
      841 ctgttcgcca tgctcggagt gccgtacaac ctcaagttcg tgtggtcccc gctcattgac
      901 cgggtgcaga ttcccgtgct gacccgacgg ctggggcggc gccgaagctg gctactcgtc
      961 gtccaactcg ctctgctcag cgccctcgta gcgctcggcg tcacgcagcc cgagaaggcg
     1021 ccgctctgga cggctcttgc cgcactggtc gtcgccttcc tctctgccag tcaggacgtc
     1081 gtcatcgacg cctaccggat cgagacggcg cgcgagcacg agcagggtgc tgccgccgcc
     1141 atgacgcagt acggttacag gctagggatg ctggccagtg gggcaggggc cctcttccta
     1201 gccgctctcc taccgtggtc gtgggtttac gcggcgatgg cgggactctt ctcgatcggg
     1261 gtgctgacca caatactggc ccccgaaccg aaggccagcg tagtggcggc accgaacgct
     1321 gacctcctcg gccgtctccg ggaggcggtc gtcgcgccct tcgtcgagtt cctccggcgg
     1381 cagggggtcg cggtcgctgt cctcgtccta accttcatcg tgctctattc cctcggcgac
     1441 gccttcgccg ggaccatggc caaccccttc tacctcaagg tcggcttcag caaagtcgag
     1501 atcgcgacgg tgaccaaagc cttcggcctg ggcgccacgc tgaccggcgt cttcctcggc
     1561 ggcctcgccg tcggccggta cggcgtgatg aaagcactcc tggtgtgcgg gatctgccaa
     1621 gcgctctcga acctgatgtt cgccgcccaa gcgcttgctg gtcacgacgt acgcgtcctc
     1681 gtcttcacgg tcgcgatcga gagcctgacc ggtggcatgg cctcggctgc cttcgtcgca
     1741 tacctgtcag tcctctgcaa cgtggcctac accgcgacgc agtacgccct gttcacctca
     1801 ttcatggccg tcgggcggac attcctcgcc tcgaccagtg gctgggtcgc cgaccacatg
     1861 gcctgggtgc agttcttcct catctcgacc ctgcttaccc tccctggact cgcgatcctc
     1921 ggatggatga tgcaccggtt ccctgccgac cgccccgagc tgagctagac agatacggca
     1981 cgacccttga cacctaatag caatgatcac ctccaccctt tacctacccg aacaaccgac
     2041 caacatccag caccagcacg taccaatgag aggtatatga cctgatccga aggagtgttc
     2101 tgtcatgacc aggactgtcc ggtagtggct tctgacaatc gctagatcgc aggttggcgc
     2161 cctgcaccga gccaggttca gcgaagccaa ccgcgggcgc tcgccgcccc gcaccccggc
     2221 aggcctccag gatggccgac acccgtgcca agcccggcgc gagccgaggc tatgtggtgt
     2281 ggcatcccgt cagctcctcg agggctacca cgcgctgccc cgggggcaag cctggcaaac
     2341 tcggccgacg gtcgggagga gtgttgcccc cggggcagcg cgtggtcagg ctgcgccagg
     2401 ctgacgggat gcccacaaca gccagcgtgc aagatcaact cctcgggccg tcgctgggcc
     2461 gtgagacgtc gggaagctgt gagaaacccg gagaagtagc gagagcattc ctcctggtga
     2521 agccgacgaa tccttccgat ggcccaggtg gcgatatgcg gggcggacga gctggcctaa
     2581 gccggatcct gtagctgagc aagctcacga tcaaatacgt gcggcgtgct gttagcgtgc
     2641 tattagcccc ggtaaaccac ggtcaattaa cggttaactg ggatccggcc tgaccgcagg
     2701 tcgaggcccc tgacggcgca gtgagcgcag tcttccaagc tgggtccgcc gagccacgaa
     2761 gcactgacgc gacgtgatcg cacgcta
//
LOCUS       DASVXZ010000050         5885 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1708409, whole genome shotgun sequence.
ACCESSION   DASVXZ010000050 DASVXZ010000000
VERSION     DASVXZ010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5885
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1708409"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1649)
                     /locus_tag="VF788_00910"
     CDS             complement(<1..1649)
                     /locus_tag="VF788_00910"
                     /inference="COORDINATES: protein motif:HMM:NF013124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEX8932762.1"
                     /translation="MNFEVLGPLRVRLGEQPVPLSAPMPRMLLGVLLTRANTPVPVDV
                     LVDALWAGQRDPRAAKKLQLHVHRLRRALGDPARILYENGGYTLRVLPGELDAECFES
                     ALTESTGAGQPARAVVLLRQALELWRGDPFSDIVDLPLLRAEADRLSERRLAGLAQLY
                     TAELACGHATVIVPELVELAGHHPMREQLQGLLMTALYQAGRQADALEVYQRTRGALV
                     EQLGLEPGNELQRLEHAILTGDPMLATPGTPSIAPAQLPADINDFTGRETQLATVAHL
                     ARTTDRSASVLVAITGKAGVGKTALAVHAAHRLRDQYPDGQLFVNLLGTEATPLCATD
                     VLARFLRSLGVDPTAIPDDAEERAALYRSRLADRRLLILLDDAACEAQLRPLLPGTSG
                     CAVLVTSRARLAGLAGARVVDLDVFEPDQALELLARAAGPQRMAAEPAAAQEIVRLCG
                     FLPLAVRVAGARLGARPHWPLSRLEADLTDEDTRLDTLRLGDLEVRASIARSYETLDV
                     MARRAFRLLGLLEIREFAPWVTAALLDIPQAKAEELMDTLV"
     gene            1948..2379
                     /locus_tag="VF788_00915"
     CDS             1948..2379
                     /locus_tag="VF788_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932763.1"
                     /translation="MSWTSARVVGSALATATATLAIAVPASADAATPPHKNGPGVGAS
                     NTIACGLSYPDKDNGPWVNFPANTVTMRSGPSNSCIQTGQGLHDQRADYLCYTPGDGG
                     TWTYLRNTSTGDQGWVRDDLLPGYGSNTTCEEHPPPSTVRT"
     gene            complement(2483..3898)
                     /locus_tag="VF788_00920"
     CDS             complement(2483..3898)
                     /locus_tag="VF788_00920"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEX8932764.1"
                     /translation="MTQHYRTERDTMGEVQVPAEALYRAQTQRAVDNFPISGRGLERA
                     QIRALGLVKAACARVNGQLGVLDPALAEAIASAADEVAAGQHDAQFPVDVFQTGSGTS
                     SNMNANEVIATLASRATGADVHPNDHVNASQSSNDVFPTTIHLAATEAVAHEVMPALV
                     HLASALTRKSHDWAEVVKAGRTHLMDAVPITLGQEAAGWASQARYGVERLASSLPRLG
                     ELPIGGTAVGTGLNAPAGFGAAVVEQLRRATGLEALTEARDHIEAQAARDGLVECSGT
                     LRTVAVSLFKIANDIRWLGSGPRTGLAELRIPDLQPGSSIMPAKVNPVICEATMMVAA
                     QVIGNDACVAFAGSQGNLEINVMMPVMARNVLESARLLAAVARLLADKVVEGAEADSA
                     RCREYAESSPAIVTSLNPYLGYEEAASIAKQALEQQRTIRDVVRDRGHTDNGTLTPEQ
                     LDAALDVLAMTLSPRSGGRLP"
     gene            complement(3895..4929)
                     /gene="glpX"
                     /locus_tag="VF788_00925"
     CDS             complement(3895..4929)
                     /gene="glpX"
                     /locus_tag="VF788_00925"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HEX8932765.1"
                     /translation="MSTLSAPRRNPVREEPDRNLALELVRVTEAAAMAAGRWVGRGDK
                     NGGDQAAVDAMRKLVGSVSMRGVVVIGEGEKDEAPMLFNGEEVGNGQGPECDVAVDPI
                     DGTTLMSKGMPNALAVLAVSERGTMFDPSAVFYMEKIATGPEAAETIDLSVPVAENIR
                     RVAEAKQMNISDITVCILERPRHDDLARQVREAGARITFITDGDVAGAIAAARPDTGV
                     DLLIGIGGTPEGIISAAALRCMGGAIQGRLWPRDDAERRAALDAGHDLDRILTTEDLV
                     CGDNVFFCATGITDGELLRGVTYHAGGCRTHSIVMRSKSGTVRMIDSVHRLTKLRQYA
                     AVDFDQLPHA"
     gene            complement(5000..5263)
                     /locus_tag="VF788_00930"
     CDS             complement(5000..5263)
                     /locus_tag="VF788_00930"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005168141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEX8932766.1"
                     /translation="MDDNGKSRGSADTDPASLGYEAARDELAEVVRRLEAGGLSLEDS
                     LTLWERGEQLAAVCERHLAGARERIETVIASREQQPGERPLTK"
     gene            complement(5253..>5885)
                     /locus_tag="VF788_00935"
     CDS             complement(5253..>5885)
                     /locus_tag="VF788_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEX8932767.1"
                     /translation="VEVIVLARGGGSVEDLLPFSDEALCRTVSRCTTPVVSAIGHEPD
                     TPLLDHVADKRCSTPTDAGKCVVPDVTEETAMLHQLRNRCARALHGWVDRERRLLDAL
                     RSRPVLADPLRPLAEHGRAVTELRTRADRALLGGLRTAQDGLTHTSARLAALGPAATL
                     ARGYAVVQRIDTATNGPAPVLRSVADAPEGTELRIRLCDGAVGAVVTSGR"
BASE COUNT          940 a         2027 c         1949 g          969 t
ORIGIN      
        1 tcgaccagag tgtccatcag ctcttctgcc ttggcctgag gaatgtcaag tagtgctgcc
       61 gtcacccagg gggcgaattc gcggatctcg aggagcccga ggagccggaa ggcccgtcga
      121 gccatgacat cgagggtttc gtagctgcgc gcgatgctgg ctcgcacctc cagatctccg
      181 agccgcagcg tgtccaggcg cgtgtcctcg tcagtcaggt cagcttcgag gcgggacagc
      241 ggccagtgcg gtcgagcgcc cagccgggca ccggcgaccc ggacggccag cggaaggaat
      301 ccgcagagcc gcacgatctc ctgtgctgct gcgggctccg ctgccatccg ctggggcccg
      361 gcggctcgcg ccagcagctc aagggcctgg tcgggttcga agacgtccag atcgaccacc
      421 cgggcaccgg ctaggccggc cagccgagct ctgctggtga ccaacaccgc gcagccggag
      481 gtgcccggca gcagcggccg cagctgggcc tcgcacgcag catcgtcgag cagaatgagc
      541 agccgccggt cggccagccg gctgcggtac aaggcggcgc gttcctcggc atcgtccggg
      601 atagcagtgg ggtccacccc gagcgagcgc aggaaccggg ccagcacgtc cgtcgcgcac
      661 agtggggtgg cctcggtacc gagaaggttc acgaacagct gcccgtcggg gtactggtcc
      721 cgtaaccggt gcgcggcgtg caccgccagg gcggtcttac cgaccccggc tttgccggtg
      781 atcgcgacga gaaccgatgc ggagcgatcc gtcgtcctgg ccaggtgcgc gaccgtggca
      841 agttgagtct cgcggccggt gaagtcgttg atgtctgcgg gcagctgcgc cggagcgatc
      901 gagggtgtgc ccggagtcgc cagcatcggg tcgccggtca ggatcgcgtg ctcaagccgt
      961 tgcagctcgt taccgggctc cagcccgagc tgttccacca gggcgcccct ggtgcgctgg
     1021 tagacctcca gcgcgtcagc ctgacgcccc gcctggtaga gcgcggtcat caacagtccc
     1081 tgcagctgtt cccgcatcgg gtggtggccg gcgagctcta cgagttcggg gacgatcaca
     1141 gtggcatggc cgcaggccag ctcggcggtg tagagctgag ccaggccggc gagccggcgc
     1201 tcgctcagcc ggtcggcctc ggcgcgcagc agcggcagat cgacgatgtc gctgaagggg
     1261 tccccgcgcc acagctccag cgcctgacgt aacagcacaa ctgcccgggc aggctgcccg
     1321 gcgccggtac tctcggtgag cgcggactcg aagcattccg cgtcgagctc accggggagt
     1381 actcgaagcg tgtagccgcc gttctcgtac agaatccgcg ctggatcgcc cagtgcccgg
     1441 cgcagccgat gtacgtgtag ctgtagtttc ttggccgcgc gaggatctcg ttgaccggcc
     1501 cacagcgcat ctaccagtac gtctaccggc accggcgtgt tcgccctggt gagcagtacg
     1561 ccgagtaaca tgcggggcat cggtgcggaa agtgggaccg gctgctcgcc gagtcgcacc
     1621 cgcagcgggc cgagaacctc gaagttcatt ccgccacccc cgctccgccg tcatcccagc
     1681 tgtcggtacc gagtgtagcc acacgatgcc agttggtaac cgagcattcc cccgatcggg
     1741 acaaacagcc gcttctaggc ctccctcggc tcctcctggt cacaccgtgg ggcgggtggt
     1801 gcaacggtgg gtgacggctg gcaagcggat ggaaagcgga tggaaagcgg tgggacctag
     1861 cgttggcgtc gcaacgtatc ccagggaaac ggtcgggcgg gggacctggg attcccacga
     1921 tttcgagcgg gagaggggat ttctttcatg tcttggacct ccgcacgcgt ggtcggatcg
     1981 gcactcgcca cggccaccgc cacacttgcc attgcggtgc cggcaagcgc tgacgcggca
     2041 acaccgccac ataagaacgg gcccggagta ggcgcgtcga acaccatcgc ctgcggtttg
     2101 agttacccgg acaaggacaa cggtccctgg gtgaactttc ccgccaatac tgtgaccatg
     2161 cgcagcggcc ccagcaattc ctgcatccaa accggccagg ggctgcacga ccagcgggcc
     2221 gattacctct gctacacccc tggagacggt ggtacgtgga cctacctgcg caatacctct
     2281 actggagacc agggttgggt gcgggacgac ctgctccccg gctacggcag caacacgacc
     2341 tgcgaagagc acccaccgcc atcaaccgtc agaacctgat tgcttgggag gctgtcctgc
     2401 gcattgcata gcgtagggca gcccgccagg cacccggatt tccccgcgtt ctggaggcag
     2461 aacgcagtaa tcgctgcccg tattacggca gtctgcctcc agaacgcggg gaaagggtca
     2521 tcgcgagaac gtcgagggca gcgtcgagtt gctcgggcgt gagggttccg ttgtcggtgt
     2581 gaccgcggtc gcggacgacg tcacgaatgg tgcgctgctg ctccagcgcc tgtttggcga
     2641 tcgatgccgc ctcctcataa ccgaggtagg ggttgagcga ggtcacgatc gcgggggagg
     2701 attcggcgta ttcgcggcag cgcgccgagt cggcctcggc accctcgacg actttgtcag
     2761 cgagcaaccg agcgaccgcg gcgagcagcc gggccgactc caagacgttg cgcgccatca
     2821 ccggcatcat cacgttgatc tccaggttgc cctgcgaacc ggcgaacgcg acgcaggcgt
     2881 cgttgccgat cacctgggcg gcgaccatca tcgtcgcctc gcagatgacc gggttgacct
     2941 tggctggcat gatggacgag ccgggctgca gatcgggtat cctcagctcg gccaggccgg
     3001 tgcggggtcc agaacctagc caacggatat cattggcgat cttgaagaga gacaccgcga
     3061 cggtgcgaag cgtgccggag cactcgacga gaccgtctct ggctgcctgc gcttcgatgt
     3121 ggtcacgtgc ctcggtgagc gcctccaggc cggttgcgcg gcgtagctgc tcgacgacgg
     3181 cggcaccgaa acccgcaggc gcgttcagcc ccgtgcccac cgcggtgccc ccgatcggca
     3241 gctcgcccag ccggggcagg ctgctcgcca gccgctcgac gccgtaccgg gcctgtgacg
     3301 cccatcctgc ggcctcctgc cccagcgtga tcggtaccgc gtccatcaag tgagtgcgcc
     3361 ccgctttgac cacctcggcc caatcgtgcg acttgcgggt cagcgccgag gccaagtgca
     3421 ccagcgccgg catcacctcg tgggcgacgg cctccgttgc agcaaggtgg atcgtggtcg
     3481 ggaacacgtc gtttgacgac tgggatgcgt tgacgtggtc gttcgggtgc acgtcagcgc
     3541 cggtggcccg gctggccagc gtggcgatca cctcgttggc gttcatgttc gagctggtac
     3601 ccgagccggt ctggaacaca tcgacgggga actgcgcatc atgctggccc gccgcgacct
     3661 cgtcagcggc cgatgcgatc gcttccgcca gtgccgggtc gagcaccccg agttgcccgt
     3721 tcactcgcgc acaggcggcc ttgaccagcc ctagcgcccg gatctgcgcg cgctcaagac
     3781 cgcggccgga gatcgggaag ttgtccacgg ctcgctgtgt ctgcgcccgg tacagtgcct
     3841 cggcgggcac ctgtacctca cccatggtgt cgcgttcggt gcggtagtgc tgggtcatgc
     3901 gtgcgggagc tggtcgaagt ccaccgcggc gtactggcgg agtttggtca accggtgcac
     3961 gctgtcgatc atccgtacgg tgccggactt ggagcgcatc acgatggagt gtgtgcggca
     4021 tcccccggcg tgataagtca ccccgcgcag cagctcgccg tcggtgatcc cggtcgcgca
     4081 gaagaacacg ttgtcgccgc agaccagatc ctcggtggtg agaatccggt ccaggtcgtg
     4141 cccagcgtcc agcgctgctc ggcgctcggc gtcgtcccgg ggccacagcc ggccctggat
     4201 ggcgccgccc atgcaccgca aggcggccgc actgatgatc ccttccggcg taccgccgat
     4261 gccaatcagc agatccacgc cggtgtccgg gcgggcggcc gcgatcgcac ccgcgacgtc
     4321 accatcggtg atgaaagtga tccgcgcgcc agcctcgcgg acctggcgcg ccaggtcatc
     4381 gtgccggggg cgttccagga tgcacaccgt gatgtcggag atattcatct gcttagcctc
     4441 ggcgacccgc ctgatgttct ccgccactgg cacggacagg tcgatagttt cagcggcctc
     4501 cggtccagtg gcaatcttct ccatgtagaa caccgcggag ggatcgaaca tcgtgccccg
     4561 ctctgatacc gccagcacgg cgagcgcgtt gggcatgccc ttactcatca acgtggtgcc
     4621 gtcgatcggg tcgacggcga cgtcgcattc cggtccttgc ccgttgccga cctcctcgcc
     4681 gttgaacagc atcggagctt cgtctttctc cccctcaccg atcaccacca cgccgcgcat
     4741 cgacaccgag ccgaccagct tgcgcatggc gtccacggcc gcctgatcac caccgttctt
     4801 gtcaccgcga ccgacccagc ggccagcggc catcgctgcg gcctcggtga cccgcaccag
     4861 ttccagggca aggttgcggt ccggttcctc ccgcaccgga ttccgccgtg gagccgacaa
     4921 tgtactcata aatcctcccg gaatgcgcgc ggaaaatcat tctcgaaaac tagtaacccc
     4981 cggcaatcct ctcagattct cactttgtga gcggtcgctc accaggctgc tgttcgcgac
     5041 tggcgatcac cgtctcgatc cgctcccggg cacccgcgag gtgccgctcg cacactgcgg
     5101 cgagctgctc gccgcgctcc cacagcgtca gtgaatcctc caagctgagg ccgccggcct
     5161 ccaacctgcg caccacctcg gcgagctcgt cccgggcggc ctcgtagccc agcgatgccg
     5221 gatcggtgtc ggcgctgccg cggctcttac cgttatcgtc cactggtcac caccgcaccc
     5281 accgcgccat cgcagagtcg aattcgcagc tcagtacctt ccggggcatc ggccaccgat
     5341 cgcagcaccg gggccggccc attcgtggca gtgtcgatcc gctgaaccac cgcgtatccg
     5401 cgggccaggg tggctgccgg tcccagcgcc gccaggcgcg ccgatgtatg cgtcaacccg
     5461 tcctgtgcgg ttcgtagccc gccgagcaac gcccggtcgg cgcgggtgcg cagctcggtc
     5521 acggcccggc cgtgctcggc cagcgggcgc agcgggtcgg ccagcacggg gcgactgcgc
     5581 agcgcgtcga gcagccgccg ttcccgatcc acccaaccgt gcagggcccg cgcgcagcgg
     5641 ttacgcagct gatgcagcat ggcggtttcc tcggtgacgt caggcaccac gcacttgccg
     5701 gcgtcggttg gcgtggagca gcgcttgtcc gcgacgtggt ccagcagcgg ggtgtccggc
     5761 tcgtggccga tcgcggatac gactggagtg gtgcatcgag ataccgtccg gcatagtgcc
     5821 tcgtcggaaa acggcaacag gtcctccacg ctgccccctc cccgggccag cacgatgacc
     5881 tccac
//
LOCUS       DASVXZ010000051         2541 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_453546, whole genome shotgun sequence.
ACCESSION   DASVXZ010000051 DASVXZ010000000
VERSION     DASVXZ010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453546"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VF788_00940"
     CDS             <1..444
                     /locus_tag="VF788_00940"
                     /inference="COORDINATES: protein motif:HMM:NF017088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HEX8932768.1"
                     /translation="GQLMLFSQARKRAVVSTATATRVARVDGFVVLPGPARVALLRLG
                     KVSGAGTLVSWSDVQGFGPDAVTVETDAVIRPARDSLEQRAEDNDLDILGKRVLTERG
                     TELGTVTDVDFDPETGAVTTLITKTDTIAGQRLIGLGGYAAVVSA"
     gene            1018..1872
                     /gene="fdhD"
                     /locus_tag="VF788_00945"
     CDS             1018..1872
                     /gene="fdhD"
                     /locus_tag="VF788_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020420759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEX8932769.1"
                     /translation="MGRLTVRHPVLRLSAEDHSSSPDRLAVEEPMELRVDGRALAVTM
                     RTPGHDVELVHGFLLTEGMIGSTSDVVSARYCNSLDSNGHNTYNVLDVALAPHVATPP
                     RSLDRNFYTTSSCGVCGKASLDAVRLHTRFSPAQDPAHVLPQTLYAMPDALRTGQRLF
                     DSTGGLHAAGLFTADGRLLVVREDVGRHNAVDKVLGWALLNRRIPARGCVLMVSGRAS
                     FELAQKAVMAGVPVLAAVSAPSSLAVDLAAEAGLTLIGFLRGTTMNIYAGANRIMMSH
                     PAGAGPSA"
     gene            complement(1864..2253)
                     /locus_tag="VF788_00950"
     CDS             complement(1864..2253)
                     /locus_tag="VF788_00950"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="This anti-anti-sigma factor, or anti-sigma factor
                     antagonist, belongs to a family that includes
                     characterized members SpoIIAA, RsbV, RsfA, and RsfB;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0045152 - antisigma factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HEX8932770.1"
                     /translation="MTLLPVTLSNAGPLSSDILSLEVTKYPSGARVVTVIGEIDGLTA
                     PELNAFLTEQLVIGQAVVVNLDGVRFMGSAGLAVLFEAHQFALREDLDLRLVCNSQTV
                     GWALDATGLREHFVIADTVPDALMGSC"
BASE COUNT          434 a          854 c          785 g          468 t
ORIGIN      
        1 ggccagctga tgctgttcag ccaagcacgc aagcgcgccg tggtgagcac tgccaccgcg
       61 acccgggtgg cccgggtgga cggcttcgtg gtgctgcccg gaccggccag agtggcattg
      121 ctccgattag gcaaggtcag cggtgcgggc accctcgtgt catggagcga cgtgcaaggc
      181 ttcgggcccg atgcggtaac ggtggaaacc gatgctgtaa tccggccggc ccgcgatagc
      241 ttggagcagc gggctgagga caacgacctg gacatcctgg gcaagcgggt acttactgag
      301 cggggtacgg aactgggcac cgtcaccgac gtcgacttcg acccggagac gggcgcggtt
      361 accacgctga tcacgaagac cgacaccatc gccggacaac ggctgatcgg tctgggtggc
      421 tatgcggctg tggtgtcggc ctgaccggct gctgtgcgcg tcttagcttc ggtcagcgtc
      481 gaaccgctgc tgcgctgatc gcgcagcagc ggtggactcg acacctcaaa catacttggt
      541 cgtgggttgg ttggcggtct agtcaccttt atcaaatgcc ttgtgcccgc aggtaggagc
      601 agaggcaaag actcaggtag cgggagtctg tggtgtgtct tcatcctttc ccactgaccc
      661 cggaggcagt cctgtaccct ttgcccgccc ggtccctaca tctgcgtctt ctggaacacc
      721 cgctggatac gtcccggccc tcgccttttc aactgtctcc tggggcgtgt ctttatcgcg
      781 ttcttccatg ccgaacccct tccttctcga agcccaggtc gctggaggca gcagtcacta
      841 cacccggcaa cttggtgtcg gtcatgattg aggcttaccc gtcgaacctc ctggctaacc
      901 gtcaaactgg gtggctcgct gggaaggctc tggcatctct catcccccgt gtgtccctgt
      961 gccagactgg cgatggaatt gagggtaacc ctctcgggcg gggacggcgg ttgagcgatg
     1021 gggcggctga cggtacgcca tccagtgttg cggctcagcg ctgaggacca cagcagctct
     1081 cccgaccggc tcgccgtcga agaaccgatg gaactgcggg tggacggtcg cgcgctggcg
     1141 gtcaccatgc gcacccccgg tcacgacgta gaactcgtgc acggattcct cctgaccgag
     1201 gggatgatcg ggtcgacgag tgacgtcgtt tcggcgcggt actgcaactc gctcgatagc
     1261 aacgggcaca acacgtacaa cgtgctcgac gtggcgctgg ccccccacgt tgctacgccg
     1321 ccccgcagcc tggaccgcaa cttctacacc acctcgtctt gcggcgtgtg tggcaaagct
     1381 tcgctcgacg ccgtgcgcct gcacacccgt ttctctccgg cacaagaccc cgcgcacgtc
     1441 ttgccgcaga cgctgtacgc catgccggac gccctgcgca ccgggcagcg gttgttcgac
     1501 tccaccggag gcctgcacgc ggccggactg ttcaccgccg atggccgcct gcttgtcgtc
     1561 cgcgaggacg tgggccggca caacgccgtg gacaaggtgc tcggctgggc gctgctcaac
     1621 cggcgcatcc cggcccgtgg ctgcgtactc atggtgtccg gccgagcgtc gttcgaactc
     1681 gctcagaagg ccgtgatggc cggagttccc gtgctcgcgg ccgtgtccgc gccctcgtca
     1741 ctggctgtcg acctggccgc cgaggccggg ctgaccctca tcgggttcct gcgcggcacc
     1801 acgatgaaca tctacgccgg cgccaaccgg atcatgatga gccacccggc gggggcgggc
     1861 ccgtcagcat gagcccatca gggcatccgg cacggtatcg gcgatgacga aatgctccct
     1921 cagcccggta gcatccaatg cccacccaac agtctgggaa ttgcacacca aacgcaggtc
     1981 aaggtcttct cggagagcga attggtgggc ctcgaagagc acagccagcc cagctgatcc
     2041 catgaaccgg acaccatcga gattcaccac cacagcctga ccaatgacca actgctcggt
     2101 caggaaggcg ttcagttccg gcgcggtcag cccatcgatc tcgccgatga cggtgaccac
     2161 acgagcaccg gaagggtatt tcgtcacctc caggctaagg atgtccgatg acaacggccc
     2221 tgcattgctc agcgtgacag gtaatagcgt catcccaact cccttccgat agctccggcg
     2281 tacctcatcc tgtctctccc agaccatagg tggcagccag ttacccccac tcacccggga
     2341 gtaaacatgc ctacgcgatg caccgcgatt tccgcgcagg tgcccgccgg tgcgatccgg
     2401 gcatttccgg ctgctgacct acttgctgcc cgcaggggtc agcggtgtcg gtccgctcgg
     2461 cgctgaaagg ccaccccctc catcgccgtc ctcaccaggg tcggtcctga cccagatccg
     2521 aaccttctgg cctgcagtga g
//
LOCUS       DASVXZ010000052         6180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_632541, whole genome shotgun sequence.
ACCESSION   DASVXZ010000052 DASVXZ010000000
VERSION     DASVXZ010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6180
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632541"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1193
                     /locus_tag="VF788_00955"
     CDS             <1..1193
                     /locus_tag="VF788_00955"
                     /inference="COORDINATES: protein motif:HMM:NF023367.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3459 domain-containing protein"
                     /protein_id="HEX8932771.1"
                     /translation="NHLGPAGNYLSQFGGYFSERHLTNWGEAVNLDGPGSDEVRRFVI
                     DNALMWLRDYHCDGLRLDAVHALVDDSAVHVLEQLAVEVAALGAHLRRPLFLIAESDL
                     NDPRFVRSRDAGGYGLDAAWADEWHHALHSTLTGERSGYYEDFGPLNLLAKALRQAWV
                     YDGSWSPHRRRVHGRAPTGLSGHQFVVCTQNHDQVGNRAVGDRLGALTSPGRLRVAAA
                     LLLTSPFVPLLFQGEEWGATSPFQYFTDHEDPELGRAVSVGRRHEFAAFGWDPGQVPD
                     PQDPATFARSQLDWSEPAKAPHASLLDWYRRLIALRKQIPALTDGRLNRVHVDCDDQG
                     GLIVRRGPVRVVSNLGVTSWTVPVDSSMSVVASSDPGISHDEGKLMLPPDTVAIIEDP
                     AHRA"
     gene            complement(1198..2220)
                     /locus_tag="VF788_00960"
     CDS             complement(1198..2220)
                     /locus_tag="VF788_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015801305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEX8932772.1"
                     /translation="MDVPAWVWLATVGGLGVLFALDLVIVDRKPHVVRMAEAARWVAF
                     YLACAAAFGLGIWLFAGSDFAVAYFAGYLTEYSLSVDNLFVFVIIMAAFKVPPIQQHR
                     VLLIGIVLALAMRGLFIAAGAVLISSFSWIFYLFGALLIYLGYRQIRERKHEARFQEN
                     LVLRALRKVIPVTDEYDGSRLTVTRDGQRWFTPMIVVMIAIGSVDLVFALDSIPAIFG
                     LTQEAFLVFTANAFALMGLRQLYFLIGGLLVRLIYLSIGLGVILGFIGVKLLLDALND
                     NALPFLNDGQPLEAVPTVGTELSLGVIISVLLVTTVASVLTTRRRRRSDPPACSGTIT
                     SGAGRE"
     gene            2484..5258
                     /locus_tag="VF788_00965"
     CDS             2484..5258
                     /locus_tag="VF788_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005448933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8932773.1"
                     /translation="MPRTARLVRLVRPRWRLLVVAALVASAAVALAVTMTPAAPQVAI
                     QNVTIDVPGGPGVTGQVHLDATVYQPAIIPAPAVLIAHGFGGSKDSVSTEAAALARRG
                     FVVLAWTARGFGASTGQIGLDSPDYEVADARRLVDWLAKRPDVVRDGPGDPRVGVTGA
                     SYGGALALLLAGTDRRVDALVPEITWNDLAQALFPNAGGRAPISAGTPAPGAFSPGGV
                     FKRDWAGYFFGAAPGSGAETHSLCGRFRPEVCTAYVQAAATGSPTQEIVTLLRRSSPA
                     TVARAITAPTLLIQGEHDTLFGLDQADATARQLASAGTPLKVIWYAGGHDGGAPSAAL
                     QEQVGDWFDYHLRRLGEDPGTGFDYQVQALFGTRRGIPPRTVHAPAYPGLSNDPVPHQ
                     QLTLHGAPQLVIRPPGGSPAALSSLPGLNAALPEGTGNLDGVAVDVPGQAATFVSDPL
                     ADPLEIAGAPQIRLRVAAAATGTAPAGPASTSSPEAVLFVKLYDLGPDGRRVLPGGVV
                     APVRIGPLPSDGAPVEFAVTLAGVVRPVQAGHRLELAVATTDRGYALPPQPAGYTVSL
                     ADAALAVPMVPGEQVSGPLPAAQLIGLGGLATLVSALGVIAALRRRRTDDTDPVLAEV
                     PLVVAGLTKRYPGGLTAVDDLSFRIEHGQVLGLLGPNGAGKTTVLRMLMGLIQPTGGE
                     LRAFGHRVGPGSAVLSRIGSFVEGPGFLPHLTGAQNLALYWAASGRPTADAGVEEMLE
                     IAGLGHAVHRRVSTYSQGMRQRLAIAQAMLGRPDLLVLDEPTNGLDPPQIHAMREVLR
                     DYALRGATVLVSSHLLAEVEQTCSHVVVMHRGRLVAAGTVAEIVAGTGTVSFTVDDPA
                     QAAAVLHDLAGVDVMGVERRVVHAHLDGLPRALAVSALVGAGIGVEGVAARHQLEEAF
                     LQLVGEEALE"
     gene            5255..6106
                     /locus_tag="VF788_00970"
     CDS             5255..6106
                     /locus_tag="VF788_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932774.1"
                     /translation="MRRTSGAAPGYRTAKTLPLRVELVRQLRRRRTQLTVGFLTLLPV
                     LLWLAFKIGRNDRAGAGATLIDLATAGGPNFVVFTLFSTASFLLVVVVALFFGDTVAS
                     EASWSSLRYLLAAPVPRGRLLRQKAVVAALLSVFALVLLPAVAMAVGVLAYGAGDLVS
                     PTGQSLDFAQATGRLALAPGYLAVHLAWVAGLALLLSVSTDAPLGAVGGAVMASILSQ
                     ILETIDALGDLRDYLPTRFNSAWADLLASPIDWTHLASGAFSGLAYATAFGLAAWYRF
                     ATKDITS"
BASE COUNT          984 a         2083 c         2073 g         1040 t
ORIGIN      
        1 acaaccatct cgggcccgcc gggaactacc tgtcgcaatt cggtggctac ttctctgagc
       61 ggcacctgac gaactggggt gaggcggtaa acctcgatgg gcccggtagc gacgaagtgc
      121 gccggttcgt gatcgacaac gctctgatgt ggctgcgcga ctatcactgc gacgggctgc
      181 gcctcgacgc cgtgcacgcg ctggtcgacg actccgccgt gcatgtcctc gaacagctcg
      241 ccgtcgaggt agccgccctc ggtgcccacc tgcgtaggcc gctgttcctc atcgccgaaa
      301 gtgacctgaa cgacccgaga ttcgtccgca gccgtgacgc cggcggttac ggtctcgacg
      361 ccgcctgggc ggacgaatgg caccacgccc tgcacagcac cctcaccggc gagcgcagcg
      421 gttactacga ggatttcgga ccgctgaact tgctggccaa ggcgctacgc caggcatggg
      481 tctacgacgg gagctggtcg ccgcaccgcc gccgcgtgca tggccgagca cccactgggc
      541 tctccggtca ccagttcgtg gtgtgcaccc agaaccacga ccaggttggc aaccgtgccg
      601 tcggggatcg gctcggtgcg ctgacgagcc cgggtcgtct gcgggtcgcc gccgcgctgc
      661 tgctcacctc accgttcgtg cccctgctct tccagggtga ggagtgggga gcaacgagcc
      721 cgttccagta cttcaccgac cacgaggatc ccgagctggg ccgggcggtc agcgttggcc
      781 gccgccacga gttcgccgct ttcggttggg accccggaca ggtgcccgac ccgcaggacc
      841 ctgccacctt tgcccgttcc cagctcgact ggtccgaacc tgccaaagcg ccgcatgcct
      901 cgctgctgga ctggtaccgc cgtctgattg cgctacgcaa acagattccg gccctcaccg
      961 acggtcgcct caacagggtc catgtcgact gcgacgacca aggcgggctg attgtacggc
     1021 gcggcccggt gcgggtggtg agcaacctgg gcgtcactag ttggaccgtc ccggttgact
     1081 cctctatgag cgtggtggcc agttccgacc cgggtatctc ccacgacgag gggaagctga
     1141 tgttgcctcc tgacacggtg gcgatcatcg aagacccggc tcatcgtgcg tagcgtccta
     1201 ctcgcggcca gcccccgacg taatcgttcc cgagcaggcc ggcggatcgc tgcgacgacg
     1261 tctgcgcgtc gtcaacacgc tcgccacggt cgtcaccagc agtacgctga tgatcacccc
     1321 gagcgagagc tcggtgccta ccgtcggtac cgcctccagc ggttgcccgt cattgaggaa
     1381 aggcagcgcg ttgtcgttta gcgcgtcgag caacaacttc acaccgatga atccgaggat
     1441 cacgcccagc ccgatagaga ggtagatgag cctgacgagc aggccgccga tgaggaagta
     1501 cagctgccgt aagcccatca atgcaaaggc attggcggtg aagaccagga aggcttcctg
     1561 agtgagcccg aagatcgctg gaatggagtc cagggcgaag accaggtcaa cggaaccgat
     1621 cgcgatcatc acgacgatca tcggcgtgaa ccaacgctgg ccgtcccggg taacggtgag
     1681 ccgcgatcca tcgtattcgt cggtcaccgg gatcaccttc cgcagcgccc gcaacacgag
     1741 gttctcctgg aaccgtgctt cgtgcttgcg ttcccggatt tgccggtaac caaggtagat
     1801 cagcagggca ccaaagagat aaaagatcca gctgaagcta gagatcagca ccgcgcctgc
     1861 cgcgatgaac agcccgcgca tggccagcgc aagcacgatg ccgatcagga gcacccgatg
     1921 ttgctggatg ggcggaacct tgaaagccgc catgatgatc acgaagacga acaggttgtc
     1981 caccgataac gagtactcgg tgagatagcc ggcgaaatac gcgactgcga aatcgctccc
     2041 cgcaaacagc cagataccca gcccgaacgc ggccgcgcag gcgaggtaga acgccaccca
     2101 ccgggccgcc tcggccatgc gcaccacgtg tggcttgcgg tccacaatga ccaaatcgag
     2161 ggcgaacagg acgccaagac cacccaccgt ggcgagccag acccaagcgg gcacatccat
     2221 gagcgacctc cggcagacgg catgcgtcga tcaccggagg tctcttccac cggcgtaacc
     2281 ggtcgacggc accgggcgcc ggcagtgcag gcagaccgtg ttgacgatgc cgccgcgaag
     2341 gaatactccc ctccacgtaa ggcaagtctc ccttatcctc tccggcggca ccaccccggg
     2401 tagccacgat cacgttcggt gaagcactga gaatccgctg agacggctgc ggcaccgggg
     2461 cgcggtgacc taccgtcggt agcgtgcccc gaacggcccg attggtccgg ctggtgcggc
     2521 cgcgctggcg actactggtc gtcgcagcgc ttgtcgcgag cgccgccgta gcgctggccg
     2581 tcacgatgac ccctgctgct cctcaggtgg ccatccagaa cgtcacgatt gacgtaccgg
     2641 gagggccggg cgtcaccggt caggtgcatt tggacgccac ggtctaccaa ccggcgatca
     2701 ttccggctcc ggccgtgctg atcgcgcacg gtttcggtgg cagcaaagac tcggtcagta
     2761 ccgaggcagc cgcgctggcc cggcgggggt tcgtcgtgct cgcctggacc gcccgcggat
     2821 tcggcgcgag caccgggcag atcggcctgg actcccccga ctacgaggtg gccgacgccc
     2881 ggaggctggt ggactggctg gctaaacgac ccgatgtggt ccgcgatgga cccggtgatc
     2941 cccgggtcgg tgtcaccggc gcatcctacg gcggcgcgct ggccctgctg ctggctggga
     3001 ccgaccggcg ggtggatgcg ctcgtaccgg aaatcacctg gaacgatcta gctcaagcgc
     3061 tgttcccgaa cgccggcggc cgagcgccca tctccgccgg gaccccggcc cccggcgcct
     3121 tctccccggg cggggtgttc aagcgggact gggcgggcta tttcttcggc gcagcccccg
     3181 gctcgggcgc tgaaacacac agtttgtgcg gacgattccg cccagaggtc tgtaccgcct
     3241 acgtccaggc cgccgccacc ggcagcccca cccaggagat tgtgacgctg ctgcgccgct
     3301 cctcccccgc cacggtcgct agggccatca ccgcgccgac cctgctcatt cagggtgaac
     3361 acgacacgct gttcgggctg gatcaggccg acgccaccgc ccggcagctc gcctcggccg
     3421 gaaccccact gaaggtgatc tggtatgccg gtgggcacga cggcggcgcg cccagcgcag
     3481 cgctccagga gcaggtcggt gactggttcg actaccacct gcgccggctc ggtgaggatc
     3541 cgggcaccgg attcgactac caggtgcagg cattattcgg cacccgacgt gggatcccac
     3601 cgcggaccgt gcacgctccg gcctatcccg ggctgagcaa cgatccggtg ccccaccagc
     3661 agttgacgtt gcacggtgcg ccgcagctgg tgatccggcc gcctggcggc agtccagccg
     3721 cgttgagcag tctgccaggt ctgaacgccg cgctgcctga aggcaccggc aacctcgatg
     3781 gcgtggcggt ggacgtgccg gggcaggccg caacgttcgt cagcgatccg ctggccgatc
     3841 cgctggagat cgccggagca ccacagatcc ggttgcgggt agcagccgca gccaccggca
     3901 cggcgccggc tgggccagca tcaacttcct cgcccgaagc ggtgctgttc gtcaagctct
     3961 atgacctagg gccggacggg cgccgagttc tccccggcgg cgtggtagcc ccggtgcgga
     4021 ttggtccgct gccttcagac ggtgcaccgg tggagttcgc tgtgacgctc gccggcgtgg
     4081 tgcgaccggt gcaagctgga caccggctgg agctggccgt ggccaccacc gaccgcggct
     4141 atgcgttgcc cccgcaaccc gccgggtaca cggtatcgct ggccgatgca gcgctagcgg
     4201 tgcctatggt tcccggtgag caggtgtccg ggccgcttcc ggccgcgcag ctcattgggt
     4261 tgggtgggct ggccacgctg gtgagcgcac tcggcgtgat cgcagcatta cgccgccggc
     4321 gcaccgatga caccgatcct gtgctggccg aggtacctct ggtggtggcc ggtctgacca
     4381 agcggtatcc gggtggcctc accgccgttg atgacctgtc cttccgcata gagcacgggc
     4441 aggtgcttgg tctgctcgga cccaatgggg ccggcaagac gacagtgctg cggatgctga
     4501 tgggactcat ccagcccacc ggcggggagc tgcgggcctt cggacaccgg gtgggcccgg
     4561 gttcggcggt gctgtcgcgg atcgggtcgt tcgtggaagg cccaggattc ctcccgcacc
     4621 tgactggcgc gcaaaaccta gcgctgtact gggcagcttc cgggcgtccc accgcggatg
     4681 ccggcgtgga ggagatgttg gagatcgccg gattgggcca tgcggtgcac cggcgggtgt
     4741 ccacctacag ccaagggatg cggcagcgct tggcgatcgc ccaggccatg ctcggccggc
     4801 cggatctact ggtgcttgat gaacccacca acggcctgga cccaccgcag attcatgcca
     4861 tgcgcgaagt gctgcgcgac tacgccctcc gcggagcgac ggtcctggtc tccagccacc
     4921 tgctcgccga ggtggagcag acctgcagcc atgtggtggt gatgcatcgg ggccggttgg
     4981 tggccgccgg taccgtggcg gagatcgttg ccggtaccgg cacggtgagc ttcaccgtgg
     5041 acgacccggc gcaagccgct gccgtgttgc acgatctggc cggcgtcgac gtgatggggg
     5101 tcgagcggcg cgtagtacat gcccatctcg acgggctgcc gcgcgcgttg gcggtttccg
     5161 cgctggtcgg ggcgggcatc ggcgtcgagg gcgtggccgc gcgccaccag ctggaggaag
     5221 cgttcctgca actggtggga gaggaggcgc tcgagtgaga cgcacctccg gggccgcgcc
     5281 gggttaccgg accgcgaaga ccttgccgct gcgcgtggaa ctggtacgcc aactcaggcg
     5341 caggcggacc cagctcaccg tgggattcct gacgttgctg cctgtcctgc tgtggctcgc
     5401 cttcaagatc ggccggaacg atcgggctgg tgccggagcc accctcattg acctcgccac
     5461 ggctggcgga cccaacttcg tggtgttcac cctgttctcg acggcgagtt ttctgctggt
     5521 tgtcgtggtg gcgctgttct tcggggatac ggtcgccagc gaggcatcct ggtcgagtct
     5581 gcgttacctg ttggcggctc cggtgccgcg gggacgcctg ctgcgacaga aagcggtggt
     5641 ggcggcgctg ctgtcggtgt tcgctttggt cttgcttccc gcggtggcga tggcggtggg
     5701 tgtgctcgcc tacggcgcgg gggatctggt ctcccccact ggccagtcgc tcgatttcgc
     5761 ccaagccaca ggccggttgg cactggcccc cgggtacctt gccgtccacc tggcgtgggt
     5821 cgctgggctg gcgctgctgc tgtcggtgag caccgacgcg ccgctcgggg ccgtcggtgg
     5881 cgccgtgatg gcatcgatcc tgtcccagat tctggagacg attgacgcgc tcggtgacct
     5941 gcgggattac ctgcctaccc gcttcaactc agcgtgggcc gacctgctgg cttcccccat
     6001 cgactggacc cacctggcca gcggagcatt ctcgggtctc gcctacgcca ccgccttcgg
     6061 cctggcagct tggtaccgct tcgcgaccaa agacatcacc tcctgaccgg tcaggtatga
     6121 acgaaccatc cgttggtatg tccgacgtct cgcgtacggg tgctccagac gtaccgctct
//
LOCUS       DASVXZ010000053         2502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_899122, whole genome shotgun sequence.
ACCESSION   DASVXZ010000053 DASVXZ010000000
VERSION     DASVXZ010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_899122"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..376
                     /locus_tag="VF788_00975"
     CDS             <1..376
                     /locus_tag="VF788_00975"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEX8932775.1"
                     /translation="TSPVGAYPANPYGAVDLIGNVWEWTSDRWTSHHQQAATSPCCVP
                     SDSRQQHAGPERPRNAYVVKGGSHLCAPEYCLRYRPSARQPQDRDSATTHIGFRCARD
                     IDTEPSDEVRRPDSGRTVSLHP"
     gene            590..2353
                     /locus_tag="VF788_00980"
     CDS             590..2353
                     /locus_tag="VF788_00980"
                     /inference="COORDINATES: protein motif:HMM:NF033559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1634 family transposase"
                     /protein_id="HEX8932776.1"
                     /translation="MNEQVEQGSARMHIDSAGRQYTTVGGERRAYPCYLLRRSFRDEH
                     GRPRKETLANLSSLPDDAITALRKILKGATLVDAEETFQTERSIPHGDVAAAHVMATK
                     LGLRTLLGPACAQREIAYALILSRAVRPESTLSTATWWAGSDTTLAIDLGVAGVSTDE
                     IYTAMDWLASRQAQIEKGLAARHLCAGGIAMFDLSSSWVEGTQCDLAAFGYSRDGKRG
                     RKQIEYGLLTDPLGRPIAVEVFTGNTGDAVSFKTAIARVRDDFSIANLIMVGDRGMIT
                     KTRIAELAQLPGMDWITALRAPAIAALARDNGPLQMSLFDEHNLAEITHPDYPGERLI
                     CCRNPVLATERARKRQELLTATAHDLANIKQAVDAGKLTGADKIGERVGKVIGKHKVG
                     KHFIRDITDTSFTYTHDQDKISAEAALDGIYVIRTSVPTSTLDSAGTVIAYKNLKYVE
                     RDFRITKTDDLDLRPIYHYRENRVRAHVLICMLAAYLTWHLRQTLAELTYTDQDIPPA
                     HDPVAPAQRSTQAKTKDATKRNTHNLPLHKYQDLLHHLATLDRQTILFTGQKIEKLTT
                     PTPVQRRAFELLGTPIPLTLQ"
BASE COUNT          549 a          883 c          671 g          399 t
ORIGIN      
        1 aacttcccca gtgggcgcat atccagcgaa tccctacgga gccgtggact tgatcggcaa
       61 cgtctgggaa tggacgtccg accggtggac ctcccatcac cagcaggcag cgacctcacc
      121 atgctgcgtg ccatccgatt cccgccagca gcacgccggc ccagaacgcc cccgtaatgc
      181 atacgtggtc aagggcggat ctcacctctg cgcccccgag tactgcctgc ggtaccggcc
      241 ctcggctcgg cagccacagg accgggactc cgcaactacc catatcggat tccggtgcgc
      301 gcgggacata gacactgagc cgtctgatga ggtccggaga ccggatagtg ggagaacggt
      361 gtcactgcat ccctgaatcc acgcggggct cggctcgtga tcgacttcaa ggaggtcatc
      421 actcgatgag cgggcgacgg cgtcagcatg ccggagagta cgtccgtgag cgctaaggcc
      481 gaacttgcgc cgtgttccgt agctgatcat ggttctgact tgctgaaagt gccacgacac
      541 gcctgtagct gtaaccagta aaatctcccc catctcatga tcagtatggt tgaatgagca
      601 ggtggaacag ggtagcgcgc ggatgcatat cgacagtgcc ggtcgccagt acaccaccgt
      661 gggtggggaa cggcgggcct acccgtgcta tctgctgcgc cgctccttcc gcgacgagca
      721 cggccgtccc cgcaaggaga ccctggcgaa tttgtcgtcc ctaccggacg acgcgatcac
      781 ggcactacgg aagatcctca agggcgccac actggtcgac gcggaggaaa ctttccagac
      841 cgagcgctcc ataccccacg gtgatgtcgc cgcggcccat gtgatggcca ccaagctagg
      901 cctgcgcacg ttgctgggac cggcctgcgc ccagcgggag atcgcttatg cgctgattct
      961 ctcccgggcg gtgcggccgg aatcgacatt gtccaccgcg acctggtggg cgggctcaga
     1021 taccacgctg gcgattgacc tgggtgtggc cggggtcagc accgatgaaa tctacacggc
     1081 catggactgg ttggcctccc ggcaggccca gatcgagaag ggactggccg cgcgccatct
     1141 gtgcgctggt gggattgcca tgtttgattt gtcctcctcc tgggtggagg gaacccagtg
     1201 cgacctggcc gcgttcgggt attcccggga cgggaaacgc ggccgcaaac agattgagta
     1261 cggactgctc actgatccac tagggcggcc gatcgcggtc gaggtgttca ccggcaacac
     1321 cggcgatgcg gtctccttca agaccgccat cgcccgggtt cgcgatgatt tcagcatcgc
     1381 gaacctcatc atggtcggag atcgcgggat gatcaccaag acccggatcg ccgagttagc
     1441 acaactcccg ggcatggact ggatcaccgc cctgcgcgcc cccgccatcg ccgcgctagc
     1501 cagggacaac ggcccgctgc agatgagctt gttcgacgag cacaacctcg ccgagatcac
     1561 ccatcccgac tacccgggtg aacgactcat ctgctgccgc aacccggtcc tggccaccga
     1621 gcgggcccgc aaacgccaag aactgctcac cgccaccgcc cacgacctgg cgaacatcaa
     1681 acaagcggtg gacgccggga aactcaccgg cgcagacaag atcggcgagc gggtaggaaa
     1741 ggtcatcggc aagcacaagg tgggcaagca cttcatccgc gatatcaccg acaccagctt
     1801 cacctacacc catgatcagg acaagatctc cgccgaggcc gccctcgatg gaatctacgt
     1861 catccgcacc agcgtgccca cgagcactct cgattccgct ggcaccgtca tcgcctacaa
     1921 gaacctcaaa tacgtcgagc gggacttccg catcaccaaa accgacgacc tcgatttacg
     1981 gcccatctac cactaccgcg aaaaccgggt ccgcgcccac gtactcattt gcatgctagc
     2041 cgcctacctc acctggcacc tgcgccaaac actcgccgaa ctcacctaca ccgaccaaga
     2101 catcccccca gcacacgacc ccgttgcccc cgcgcaacgg tcaacacaag cgaaaaccaa
     2161 agacgccacc aaacgcaaca cccacaacct acccctccac aaatatcaag acctcctcca
     2221 ccacctcgcc acactcgacc gacaaaccat cctcttcacc ggacaaaaaa tagagaaact
     2281 caccaccccc acacccgtcc aacgccgagc cttcgaacta ctcggcaccc ccatacccct
     2341 caccctccag tagccagcaa ccgataccat tcaccgccat ctacgggaca tcaccccagg
     2401 tcagccctct aacaccacta ccaagatcaa gcaagttcgg tctaaagacg tcgaactctt
     2461 ggtgctgcgt catgaggtcg ccgtgctgcg cagagccaac cc
//
LOCUS       DASVXZ010000054         1754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1529474, whole genome shotgun sequence.
ACCESSION   DASVXZ010000054 DASVXZ010000000
VERSION     DASVXZ010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1529474"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VF788_00985"
     CDS             complement(<1..681)
                     /locus_tag="VF788_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX8932777.1"
                     /translation="MEPPAESDLDDLTPPAPLQAGAPVREDSPTFAELGIRDEIVRTL
                     RAVGIERTFAIQELTLPLALAGDDLIGQARTGTGKTLGFGVPLIQRITTGDIVLDGTP
                     RALVVVPTRELCLQVSGDLKTAGRDLGIRVLEVYGGRPYEPQIRALTKGVDLVVGTPG
                     RLLDLAEQRHLVLGKVRVLVLDEADEMLDLGFLPDIERILQMVPEQRQTMLFSATMPG
                     PIIKLARNF"
     gene            1013..1657
                     /locus_tag="VF788_00990"
     CDS             1013..1657
                     /locus_tag="VF788_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like fold-containing protein"
                     /protein_id="HEX8932778.1"
                     /translation="MDVAREGIIDLLGVLAYGELSAFDRLAEDARSAPTLAGRAAMAT
                     MAAAEIGHFRLIENHLRGLGVLVEDAMRPFVARFDQFHASTAPRSWLESLVKAYVGDG
                     LAADFYGEIGGWLDPPTAALVKDVLSDTGHSAFAEREVRSACEQDRRTRDRLALWGRR
                     LLGEAVTNAQHVVAERDALAELIVRGSGDLAGLAVLIRRVEVLHGRRMGALGLA"
BASE COUNT          271 a          556 c          621 g          306 t
ORIGIN      
        1 gaagttgcgg gccagcttga tgatcggacc cggcatggtg gccgagaaca gcatagtctg
       61 gcgttgctcc ggcaccatct gcaggattcg ttcgatgtcg ggcaggaagc ccaggtcgag
      121 catctcgtcg gcttcgtcaa ggacgagcac tcgcaccttg cccaacacca ggtgccgctg
      181 ctcggcgagg tccaacagcc ggcctggcgt gccgaccacc aaatcgactc ccttggtcag
      241 cgctcggatc tgcggctcgt agggccgccc gccgtaaacc tccaggactc ggataccgag
      301 atcgcggcct gccgtcttga ggtcaccgct gacctgcagg cacagctcgc gggtgggcac
      361 caccaccaac gcgcggggag tgccgtcgag cacgatgtcc ccggtggtga tccgctggat
      421 caggggaacc ccgaagccga gtgtcttgcc agtgcccgtg cgggcctggc cgatgaggtc
      481 gtcgccggcc agggccagcg gcaacgtcag ttcctggatg gcgaaggtgc gttcgatgcc
      541 caccgcccgc agggttcgga cgatctcgtc gcgaatcccg agttcggcga aggtgggcga
      601 gtcctcccgc accggggcgc cggcctgcag cggagctggt ggggtgaggt catcgaggtc
      661 ggattctgcg gggggctcca aggggtaagg gtcggatagt gtggtctggc tgacggtcag
      721 cgtgatcgcc tctctcgtac ggcgcgtcca ccgccgtctc gctcgaccag cttcgcgcct
      781 cagatggcga catctcagct gggaacgacg acaccaggtc cgcgctcaca tgtcatacgc
      841 tcagcggcat cggccgtcga gccgggcgtg gctatgggtt ggcaccgcag tgtcacggca
      901 ccgttgtttt cacagctgtg cgtcacgcct tgggcacaca tactacccgt ccacgcgcca
      961 agtatgcgcg tgacaccgcg cacctttgca atgcggcact acgctcgcgg ccgtggacgt
     1021 ggcacgtgag ggcatcatcg acctgctggg agtgctcgcc tacggagaat tgtcggcctt
     1081 cgaccggctc gccgaggatg cccgcagtgc tcccacgctg gccggccggg ccgcgatggc
     1141 caccatggcg gccgctgaga tcgggcactt ccggctcatt gagaaccact tgcggggcct
     1201 gggagtcttg gtggaggacg cgatgcgtcc gttcgtggcg cgtttcgatc agtttcatgc
     1261 ctccaccgca cccaggtcgt ggctggagtc gctggtcaag gcctacgttg gcgatgggct
     1321 ggcggcagat ttctacggcg agatcggggg ttggttagac ccgcccactg ccgcgctggt
     1381 caaagacgtg ctctccgaca caggacattc ggcgttcgcc gagcgggaag tgcgcagcgc
     1441 ttgcgagcag gaccggagaa ctcgcgatcg gctggccctg tggggacggc ggttgctggg
     1501 cgaagcggtg acgaatgctc agcacgtggt ggccgagcga gacgcgctgg ctgaactgat
     1561 cgtccgaggc tccggtgacc tggccggact cgccgtgctg atccgccggg tcgaggttct
     1621 gcacggccgc cggatggggg ctctcggcct ggcgtgagca ccagggcacg ggctcggcta
     1681 gcctggcgcc aacgtcgatc gcaccgtgga ggtactggcg tggaggtcaa gattggcgtc
     1741 gcggacagcc cccg
//
LOCUS       DASVXZ010000055         1616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1529585, whole genome shotgun sequence.
ACCESSION   DASVXZ010000055 DASVXZ010000000
VERSION     DASVXZ010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1529585"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..560
                     /locus_tag="VF788_00995"
     CDS             198..560
                     /locus_tag="VF788_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932779.1"
                     /translation="MWPCLLLAAPVCVDGTGREVWGCARRYGDSPNESAGQPGDNDVV
                     MPLNAAGHYIFGGGDKLNQIIVQASQTSAVPAVENGVINVLSAGVEGGGDRGEYRGGL
                     FDRQRRGERPAGGDGVAL"
     gene            557..1051
                     /locus_tag="VF788_01000"
     CDS             557..1051
                     /locus_tag="VF788_01000"
                     /inference="COORDINATES: protein motif:HMM:NF025050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8932780.1"
                     /translation="MNPAADRRLVGDQAMNSKVVQSRSREVTLTLIEPDTSRTPGQID
                     RFLKNHGGPGVQHVAFRSLNIVRSVRTMRSNGAEFLKTPSAYYRLLADRLELSRYTAA
                     DLDELGILADEDHAGQLFQIFTRSAHRRGTVFVEVIGRLGATTFGSGNIRALYEAVEA
                     EEDG"
     gene            1048..>1616
                     /locus_tag="VF788_01005"
     CDS             1048..>1616
                     /locus_tag="VF788_01005"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HEX8932781.1"
                     /translation="MTTDRPVSIGDVRRLGEMVVPSDVWDFVEGGSGAELTLAGNRAA
                     FDRVALLPRVLVGVSTSDTSGTLLGGPVTMPVAVAPMAYQRLLHPDGELAAARAARDA
                     GVPFVLSTLSSCRIEEVAAVGGTTWFQLYWLRDEELTEKLVCRAERHGCAAIVLTVDL
                     PFVARRLRDVRNGFTLPPGVRAVNLDAPD"
BASE COUNT          259 a          501 c          562 g          294 t
ORIGIN      
        1 cgaccggact gcttcctgag gagtacgacc cgattgcggt gcgctcatcg ggcaaccacc
       61 cccaggcata ctctcacctc ggcctgattc gctggtgatg ttgttggatg ctatcagttg
      121 atgcacccgc cccccgccat cgcgccgccg gtgtccagtg ctctcccatt gccggcatgc
      181 cagagtaggg ttggtgggtg tggccatgcc tgctgctggc tgcaccggtg tgcgtggacg
      241 gaacaggtcg cgaggtatgg ggctgtgctc ggcgctatgg tgactcacct aacgagtcgg
      301 ctgggcagcc cggcgacaac gatgtggtca tgccgctcaa cgccgcaggg cattacattt
      361 ttggcggcgg cgacaaactc aaccagatca tcgtgcaagc cagccagaca tctgctgtgc
      421 cagctgtcga gaatggagtg atcaacgttc tcagcgccgg cgtggaaggt ggcggggatc
      481 gtggtgagta tcgcggtggt ctgttcgacc ggcagcgtcg tggtgagcgt ccggcgggtg
      541 gcgacggtgt cgcgctttga atccagcagc ggatcgtcgc ctcgtcggtg accaggcgat
      601 gaactccaag gtggtacaga gccgctcgcg agaggtcacg ttgacgttga tcgagccgga
      661 cacctcgcgc acaccggggc agatcgaccg cttcctgaag aaccacggtg gtccaggggt
      721 gcagcacgtc gccttcaggt cgttgaacat cgtccgctcg gtgcgcacaa tgcgctcgaa
      781 cggagcggag tttctcaaga cgccgtcggc ctattaccgg ctgctggccg accggctgga
      841 gctttcccgc tacacggccg cggatctcga cgagctgggc atcctggccg acgaagacca
      901 cgcgggccag ctgttccaaa ttttcacccg ctccgcgcac cggaggggaa cggtgttcgt
      961 cgaggtaatc ggacgtctcg gcgcgacgac cttcggcagc gggaacatcc gggccctcta
     1021 cgaggcggtc gaggcggagg aggacggatg acgacggacc ggccggtgtc catcggcgat
     1081 gtgcgtcggc tgggggaaat ggtggtgcca tccgacgttt gggacttcgt cgagggcggc
     1141 agcggcgctg agctcaccct cgcgggcaac agggcagcgt ttgaccgcgt ggccctgttg
     1201 ccgcgagtgc tggttggcgt gtccacaagc gacacttctg gcacgctgct cggtggcccc
     1261 gtgactatgc cggtcgcagt cgcgccgatg gcataccagc gtctgctgca tcccgacggt
     1321 gagctcgccg ctgcacgtgc ggcccgcgac gcgggcgtgc cgttcgtact cagcacgttg
     1381 agcagctgcc gcattgagga ggtcgccgcg gtcgggggga ccacatggtt ccagctctac
     1441 tggctgcgcg atgaggaact gaccgagaaa ctggtctgcc gggcggaacg gcacggctgc
     1501 gcggcgatcg ttctcaccgt ggacctaccc ttcgtagcgc gcaggctccg cgacgtgcgc
     1561 aacggcttca cgctgccgcc cggtgtgcgc gccgtgaacc tcgacgcacc ggatga
//
LOCUS       DASVXZ010000056         8476 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_274592, whole genome shotgun sequence.
ACCESSION   DASVXZ010000056 DASVXZ010000000
VERSION     DASVXZ010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8476
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274592"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VF788_01010"
     CDS             <1..215
                     /locus_tag="VF788_01010"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8932782.1"
                     /translation="GLAEAVEFYQNTRDPMYLRTHEEVLPLFAGFELVEPGLIRCPFW
                     RPSGPGDISDRADINTTIYGGVGRKP"
     gene            316..1122
                     /locus_tag="VF788_01015"
     CDS             316..1122
                     /locus_tag="VF788_01015"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8932783.1"
                     /translation="MNPDWVPSGIDKIMPNAARVYDYWLDGAHNFAADRVMANQIQEV
                     LPGIRDAIRVHRAFLRRAVLFMVDSGIRQFLDIGSGIPTVGNVHEIAQRTNPECRIVY
                     VDKEPVAVAHSELLLQGNDRAAVIQADLRDIEDIFDHSQAKRLLDLDQPVGLLMLALM
                     HFVPDSWHPAGIVARYRDRLAPGSYLALSHATTDGNPAGLAEAMRLYQETPEPMYLRG
                     YEEVLSFFAGFELVESGLVGCAFWRPSGPGDGCDSTEMNELAYAGVGRKP"
     gene            1226..3334
                     /locus_tag="VF788_01020"
     CDS             1226..3334
                     /locus_tag="VF788_01020"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8932784.1"
                     /translation="MRAALPSEPGLTVAGLARAWAAAASHTTYLPVSGEELERLLTRL
                     INRLVAAVAAAPMDERVAIEVAAELVANDFTGSRSISTTIEVLDYGLRRLAELQSVAS
                     HDDDVSRVLRTLASGFAEALRQRTLDEQHQVTQALLQAKLDTERELWISEARFRQVFS
                     ESEVGIAISDLNGTVVTANRAFAHIVGRSRDDLVGAALQKLLYSADQPADESTLGETY
                     QRLANGELTHFRRRGQLTAASGEIAWIFLAGFLLRDPEGVPTHHVVTTEDITELRLLQ
                     KELSRQGLYDRLTGLPNEHYFMSRLKDVLEAADPATMITVCRVNLDNFSVINDGIGLS
                     AGEFLLCSVAARLQELVADDKAIVARMATDDFAILIEEDAERDLSLFATTMNTRLCEP
                     VYFGGQGIAVSVCIGVVRRRAGGFSASELVRAANVTLHRAKRVGCGQWDLYDMEYDIR
                     QRERCQLAAEIPGAWENGEIDVHYRPLRRLADGELVALASVLRWERADGSVVGHSDCL
                     ELAEQTGLVVSLGRWILEKTCGVHVGASNYQQEKPPLLRVDLTAQLSQDPDLVGVVQG
                     ALAATGLRAGQLWLGVPLTALARGHGDVVDNVRTLAELDIKIVLVGAPVDLGYLAYLE
                     DLRVGAVEIAPDIVARIAARPGDDSLVARAIREIISLVHSAGVTVIVPGVDTPEQAQW
                     WRSAGADAAWGEQFGAPNYP"
     gene            complement(3376..4965)
                     /locus_tag="VF788_01025"
     CDS             complement(3376..4965)
                     /locus_tag="VF788_01025"
                     /inference="COORDINATES: protein motif:HMM:NF015083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase family protein"
                     /protein_id="HEX8932785.1"
                     /translation="MTRSSNKPVAHRGIGRRRFLTGLGVSAAGVLTLNNVEAHAEKVE
                     GPVPTSAPDPRFSRMFQLPAFADPRSPAVRDAMIDIGKPGGLLDARDPLNEGPVRLIT
                     NPGLSPRNIDQDIRNMTAGTTFLGQFLDHDVTFDNTSRLGVVTEPTQTPNTRQPTFDL
                     DSVYGGGPSVSAHLYESSDRAKFRVESGGLFEDLPRNRDMTAIIADPRNDENLIVAGL
                     HAAFLLAHNRTVDLHRANRLQGDPWFESRRTIMLHWQWIVVNEFLPQIVGWPMVDDIL
                     RNGRRWYRFASPTMPVEFQTGAYRFGHSIIRPSYRANLKGDPGGNPATGAPAFFAFVF
                     DPAAERQADPIDLRGGARARRRFIGWQTFFDFGGDQTQHVRPNKLIDTNISSPLFRLP
                     LGAIPSHDGPTALPQRTLLRHLTWSMPSGQRIAASTGSPVLGSEHFPELRGYGLGLDA
                     STPLWYYVLREASVFNKGVRLGPVGGRIVAETIIGMLQLDKSSYLNTGFRPSLPGQTR
                     GTFTITDLLRWAGVDPASRRQ"
     gene            5336..7468
                     /locus_tag="VF788_01030"
     CDS             5336..7468
                     /locus_tag="VF788_01030"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8932786.1"
                     /translation="MIRIDREVFARQWADAVAGTSYVSMERNEIVVHLLALTNQLVEA
                     VQSPEFDRSAGHRVGGDLVAAHFTSTDTLSKSLALIVEGLPDLLGTATSGIDVAGRVA
                     RLTGDIAAAYAGALRDRSLDEQDSIYRAALRARKQAEQALASSEARFRQVFYSSPVGV
                     AISEPGGEIIQCNRSLEDILDYSPGELLGRDLSELFAPGDRAVMHERYRGLVTGREPR
                     LRIRFSLLRADGEPVWVNLDVSVLPDAEQDPRYLVTMIDDISDLQHLEQRLRHQTLHD
                     PQTGLPNRQYFYTHLESVLAGLDRCAVVTLLHLDLDGFSAVNNGLGHHIGDRMLNVVA
                     RRLEGVVADRRGMVARLGADEFAILLEPDDSALDVGALAETINAELAEPYYLDGIGTA
                     LTATIGVVQRPAGECRPEELMRAASATLRRLRGQGPRQWAPFDADTDTPERAELRLAA
                     AIPGALENGELTVTYQPVVTLADHKLVCIEVALCWDHPQRGMLTHEQCARAAEQTGAV
                     HAIGQWMVRTAAEQAFTWCQRIGGVPPIAVNLTAAQATDPELVATITAVLAETGLPPA
                     QLELRAPVAAIRTATGELAGDGGAQAEDNLRVLSDIGLRTGLHDYAEGLGGLRCLTEL
                     APCTVRIAALMSQQTAGDQCPILPHAARTSINRLRAAGADVVAYPVDDAKQAAYCANI
                     GVNWAIGALFGPPASPQHIEVILGLPGS"
     gene            complement(7492..7833)
                     /locus_tag="VF788_01035"
     CDS             complement(7492..7833)
                     /locus_tag="VF788_01035"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8932787.1"
                     /translation="MIVPAPHPPEFRRRAVELARRGDRPIPVLAERLRISESCLRRWV
                     AQAEIDDNGSDSRLTSAEKRELAQLRRDKRRLERENEILKRAVAYFARESLDGSAPAE
                     PAAQERDSAAS"
BASE COUNT         1482 a         2728 c         2768 g         1498 t
ORIGIN      
        1 ctggactggc cgaggcggtc gagttttacc agaacacccg ggacccaatg tatctccgca
       61 cccacgagga ggtactgccc ttgttcgccg gtttcgaatt ggttgaaccg ggacttattc
      121 gatgcccatt ctggcggcct tcggggcccg gtgacatctc cgatcgcgcc gatatcaata
      181 cgaccatcta cgggggagtc ggccgcaagc cgtgacgcgc tcgaggatga gcccgcaccc
      241 ggtgggccac ggctcagcgg ccgatgttcc ccgtgatcca ctaagctggc cggtgtggaa
      301 ggagcccgct aaccgatgaa cccggattgg gtgccctccg gtatcgacaa gatcatgccg
      361 aatgcggctc gagtgtacga ctactggctc gatggtgccc acaacttcgc ggccgaccgc
      421 gtcatggcga accagatcca agaggtctta cctgggatta gggatgctat ccgggtccac
      481 cgggcgtttc tgcgcagagc ggtactcttc atggtcgact caggaatccg ccagtttctc
      541 gacatcggct caggtatccc gaccgtcggc aatgtgcacg agatcgccca gcgaaccaat
      601 cccgagtgcc ggatcgtgta cgtcgacaag gagccggtcg ccgtcgcaca cagtgagctg
      661 ctacttcaag gcaatgaccg ggccgcggta atccaggccg acctacgcga cattgaggat
      721 attttcgacc actctcaggc aaagcgtctg ctggacctcg atcagccggt cggcctgctg
      781 atgctggcgc tgatgcactt cgtcccggat tcctggcacc cggcgggcat cgtggctcga
      841 taccgggaca gactcgcgcc cggcagctac ctggccctct cccatgccac gaccgacggc
      901 aaccctgctg gactggccga ggcgatgcgc ctttaccagg aaacaccgga accgatgtat
      961 ttacgcggct acgaggaagt gctgagcttt ttcgccggat tcgagctcgt cgaatccgga
     1021 ctagtcggct gtgctttctg gcgaccctca gggccaggcg atggctgcga cagtaccgag
     1081 atgaacgagc tcgcctacgc aggcgttggt cgaaagccgt aattgatccg aggctgcgct
     1141 atagccgact gctgccgatg ctcgatatga tctccgcatc gcaggcgttg ggacaaccga
     1201 taggtggctg ccaagcggtg acatcgtgag agcggcgctt ccctccgaac ctggcctgac
     1261 ggtggccggg cttgcgcgtg cgtgggcggc ggctgcaagc cacaccacat atctgccggt
     1321 gtccggtgag gagctcgagc gccttctgac tcgtctgatc aaccggctgg tagcggcggt
     1381 ggctgccgcg ccgatggatg agcgggtggc gatcgaggtg gccgccgaac tggttgcgaa
     1441 cgatttcacc gggtcccgca gcatcagcac cactatcgag gttctcgact acggcctgcg
     1501 gcgcttggcg gagctgcaat ccgtcgcgag ccacgacgac gatgtctcgc gcgtgctcag
     1561 aacgctggcc agcgggttcg ctgaggccct tcggcaacgc acccttgatg agcaacacca
     1621 ggtcacccag gctctgctcc aggcgaagct ggacactgaa cgtgaactgt ggatcagcga
     1681 ggcccggttt cgccaggtct tctccgagtc ggaggtgggg atcgcgatca gcgatctcaa
     1741 cggcaccgtg gtcaccgcga accgagcgtt cgcccacatc gtcggccgtt ctcgggacga
     1801 tctcgtcggc gcagccctgc agaaactgct gtactcggcc gaccaaccgg ccgacgagtc
     1861 aacgttgggc gagacgtacc agaggctcgc caatggcgag ctgacgcact tccggcggcg
     1921 cggccagctg accgctgcca gcggcgaaat cgcctggatc ttccttgcag gtttcctgct
     1981 gcgcgacccc gagggggtac ctacccacca cgtcgtcacc actgaagaca tcaccgaatt
     2041 acgtctgctg caaaaagaac tgtccaggca ggggctctac gatcggttga ccgggctgcc
     2101 caacgagcac tacttcatgt cccgcctgaa agacgttctg gaggctgctg acccggcgac
     2161 catgatcacg gtgtgccggg tgaacctgga caacttctcg gtgatcaacg acgggatcgg
     2221 cctgagcgct ggcgagttct tgttgtgttc ggtcgcggcg cggttacagg agctcgtcgc
     2281 ggacgacaag gcgatcgtgg cgcggatggc caccgacgat ttcgcgatct tgatcgagga
     2341 agacgcggag cgtgacctca gcttgttcgc cacgaccatg aacacccggc tctgtgagcc
     2401 ggtctacttc gggggtcagg ggattgcggt atcggtctgc atcggtgtgg tgcgccggcg
     2461 cgccggcgga ttctcggcca gtgagttggt ccgcgccgcg aatgtcacat tgcaccgggc
     2521 caagcgcgtc ggttgtggcc agtgggatct ctacgacatg gagtacgaca tccggcagcg
     2581 ggagcgctgc cagttggcag ccgagatacc cggagcttgg gagaacggcg agatcgacgt
     2641 gcattaccgg cctttgcgcc ggctagccga tggggagctc gtcgcgctcg cgtcggtgtt
     2701 gcggtgggaa cgcgccgacg ggtcggtggt gggccattcc gattgccttg agctggccga
     2761 gcagaccggg ctggtggtct ccctcgggcg atggatcttg gagaaaacct gcggcgtaca
     2821 cgtcggggca tcgaattacc agcaagagaa accacccctg ttgcgggtcg acctcacggc
     2881 acagctgagc caagaccccg acctggtcgg agtggtgcag ggggcactgg ccgcaaccgg
     2941 cttgcgagcc ggccaactct ggctcggagt accgctgaca gctctggctc gcggccacgg
     3001 cgacgtggtg gataacgtgc gcaccttggc tgagctggac atcaagatag tgctggtcgg
     3061 cgctccggtt gatctcgggt acctggccta tctggaggac cttcgggtgg gcgcggtgga
     3121 gatcgctccc gacatcgtcg cccggattgc cgcgcgaccc ggcgatgact cactggtcgc
     3181 ccgcgcgata cgcgagatca tctcgctggt gcacagcgca ggcgtgaccg tgatcgtccc
     3241 cggggtggac acgccggagc aggcgcaatg gtggcggagc gccggggcgg acgccgcctg
     3301 gggcgagcag ttcggcgcgc cgaactaccc gtgagtggca ttcggtgctg gaacaccgtt
     3361 tcccactcac aagcgctatt gccgccgact ggctggatcg acacctgccc accggagcag
     3421 gtcggtgatg gtgaaggtgc ctcgagtctg gccgggcagg gatggccgga atccggtgtt
     3481 gagataggag gacttgtcga gctggagcat gccgatgatc gtctcggcaa cgatccggcc
     3541 tcccaccggg cctaaccgca cacccttgtt gaacacgctg gcctcgcgca gcacgtagta
     3601 ccacaggggg gtgctggcat ccaggcccaa gccgtagccg cgcagctcgg ggaagtgttc
     3661 cgatccgagc accggcgacc cagtggacgc cgcgatccgc tgcccggacg gcatggacca
     3721 ggttagatgc cgcagcaggg tccgctgcgg caacgcagtc ggcccgtcgt ggctgggaat
     3781 ggcgcccagc ggcagccgga acagcggcga ggaaatgttg gtgtcgatca gcttgttcgg
     3841 tcgcacgtgc tgcgtctgat cgccaccgaa gtcgaagaag gtttgccagc cgatgaaccg
     3901 tcgccgggcc cgcgcgccgc cgcgcagatc gatcggatcg gcctgacgct cagccgctgg
     3961 atcgaagacg aacgcgaaga acgccggcgc acccgtcgcg ggattaccgc cgggatcgcc
     4021 cttcaggttc gcgcggtacg aggggcggat aatgctgtgc ccgaaccggt aggcgccggt
     4081 ctggaactcc accggcatgg tcgggctggc gaagcggtac cagcggcgcc cgtttcgcag
     4141 gatgtcgtcc accatgggcc atccgacgat ctgcggcagg aactcgttca ccacgatcca
     4201 ctgccagtgc agcatgatcg tgcgccggga ctcgaaccac gggtcgccct gcaagcggtt
     4261 cgcccggtgc agatccacgg tccggttgtg ggccagcagg aatgccgcgt gcagaccggc
     4321 gacgatgagg ttctcgtcgt tgcgcggatc ggcgatgatc gcggtcatgt cgcggttacg
     4381 tggcaggtcc tcgaacagcc caccgctttc cacccggaac ttggcacggt ctgaggactc
     4441 gtagaggtgc gcgctgaccg aggggccgcc cccgtacacc gaatcaaggt cgaacgtcgg
     4501 ctggcgggtg ttaggcgtct gggtgggttc ggtaaccacg ccgagccggg aggtgttgtc
     4561 gaaggtgacg tcgtggtcga ggaactgccc gagaaacgtc gtgcccgcgg tcatattgcg
     4621 gatgtcctga tcgatgttcc gcgggctgag tcccggattg gtgatcagcc tgaccgggcc
     4681 ctcattcaac ggatctctcg catccagcag cccacccggc ttgccgatgt cgatcattgc
     4741 gtcccggacg gccggggatc gcgggtcggc gaacgccggc agctgaaaca tccggctgaa
     4801 ccgcggatcc ggagcggatg tcggcaccgg tccctcgacc ttttcggcat gcgcttcaac
     4861 attgttcaga gtaagcacgc cggccgcact gacgccgagt ccggtgagga atcgacgccg
     4921 gccgattccc cgatgcgcta cgggtttatt acttgatctg gtcatttggt ttccccaagg
     4981 atctaccggt ttggtgtttg acgagccgag gcacgcggcc ggattcgctg gccgcaagag
     5041 gtgatctcat gattgaaccc ccatctggtc agtcgatcgc tggtagtggc gtctgtacca
     5101 cgctccgtag tcgcgcgcgg cactggacat gtcgtcaacg ccggccggaa cgtttcacca
     5161 atgcgctgag gacgtgttcc cgccggtgag ctcgtcgatc ttgctgcatt cagacaaaac
     5221 aggcctagtg cggggaagtc tcgcagccac cgccagcgga gtaaggtgct cctgacgacg
     5281 taggcattcg ccttctcatc gtgagtccca cggccaggtc gggataccag tagcgatgat
     5341 ccgcattgat cgggaagtgt tcgccaggca gtgggcggac gcggtcgctg gcacgagcta
     5401 cgtgtcgatg gaacgtaacg agatcgtcgt tcacctactc gcgctcacca accagttggt
     5461 cgaggcggtc cagagtcccg agttcgatcg gtcagctggg caccgggtcg gcggcgacct
     5521 cgttgccgcc catttcacca gtaccgacac gctcagtaag tctctcgcac tgattgtcga
     5581 ggggttgccg gatctgctgg gcaccgctac gtcaggtatc gatgtcgccg gccgggtggc
     5641 ccggttgacc ggcgacattg ctgctgctta cgcgggcgca cttcgcgatc gcagcctcga
     5701 tgagcaggat tcgatctatc gcgctgcgct acgcgcacgc aagcaggcgg aacaggcgct
     5761 ggcatccagc gaggcccggt tccgccaggt gttctactca tctccagtag gtgtcgcgat
     5821 cagcgaaccg ggaggcgaga tcatccagtg caaccggtcg ctggaggaca tcctcgacta
     5881 ctcccctggg gagctcctgg gacgcgatct gagtgagctg ttcgcaccgg gtgaccgagc
     5941 cgtcatgcat gaacgctacc ggggcctggt gaccggccgg gaaccacgat tgcggatccg
     6001 cttctcgctg ctccgcgcgg acggtgagcc ggtgtgggtc aatctggatg tgtccgtgct
     6061 acccgacgcc gagcaggacc ccagatacct cgtgaccatg atcgatgaca tttccgacct
     6121 gcagcatctt gagcagcgct tgcgccacca gacactgcat gacccgcaga ccggcctgcc
     6181 gaatcggcag tatttctaca ctcacctgga aagcgtcctc gctgggcttg accgctgcgc
     6241 cgtcgtcacg ctgctgcatc tagatctgga cggcttctcg gccgtgaaca atggccttgg
     6301 gcaccacatc ggagaccgga tgctaaacgt ggtcgcccgc cggctggaag gcgtggtcgc
     6361 ggatcgtcgc gggatggtgg cccggctcgg cgcggacgag ttcgcaatcc tcctcgaacc
     6421 tgacgattcg gcactcgacg tcggcgccct cgccgagacg atcaacgccg agctagccga
     6481 gccgtattat ctcgacggga tcgggaccgc cctcaccgcg accatcggtg ttgtgcagcg
     6541 tccggccggc gagtgccgac ctgaggagtt gatgcgggct gcgagcgcca ccctgcgccg
     6601 cttgcgggga cagggcccgc ggcagtgggc gcccttcgac gccgacaccg atacccccga
     6661 gcgcgccgag ctccggctcg ccgcggccat acccggcgcc ctggaaaacg gtgagctgac
     6721 cgtgacctac caaccagtcg tcacccttgc cgaccacaag ttggtgtgca tcgaggtggc
     6781 actgtgctgg gatcatccgc aacggggcat gcttacccat gagcaatgcg cgcgcgccgc
     6841 cgagcaaacg ggtgccgtgc acgcgatcgg acaatggatg gtgcgcaccg cggcggagca
     6901 ggcattcacc tggtgccaac gcatcggcgg cgtgccaccg atcgcggtca acctcacggc
     6961 cgcccaggca acagatcccg agctggtcgc caccatcacc gcagtgttgg ccgagaccgg
     7021 cctgccgccg gcccagctgg aattacgggc gccagtggcc gcgatccgca ccgctaccgg
     7081 cgaactcgcc ggcgacggcg gtgcgcaagc cgaggacaac ctgcgagtac tcagcgacat
     7141 cgggctgcgc accgggctcc atgactacgc cgagggcctc ggcggcctgc gctgcctgac
     7201 agagctcgca ccgtgcacag tgcgcatcgc tgcgctgatg tcccaacaaa ccgcaggcga
     7261 ccaatgcccg atcctgccgc acgcggcacg gacgtcgatc aatcgcctgc gggccgccgg
     7321 cgccgacgtg gtcgcctacc cggtcgatga cgctaagcag gcagcgtact gcgcgaacat
     7381 cggcgtcaac tgggccatcg gcgccctttt cgggccgcct gcgtcaccgc agcacattga
     7441 ggtcatcctc ggcctgccgg gcagctgaac cagggcgagg gagttcagga atcaagaggc
     7501 ggcactgtcg cgctcttggg ccgccggctc cgccggagct gaaccgtcga ggctttcccg
     7561 cgcgaagtac gcgacggcgc gcttcaggat ctcgttctcc cgctcgagcc gccgcttgtc
     7621 cctgcgcagc tgcgcgagct cccgtttctc cgcgctcgtc agccgcgagt cgctaccgtt
     7681 gtcatcgatc tcggcttgag ctacccaccg ccgcaggcac gactcactga tccgcaagcg
     7741 ctctgccagc acagggatgg gtcgatcccc gcgacgagcc aactccaccg ctcgccgacg
     7801 gaactcgggc gggtgaggcg ctggcacgat catgttgtct gctcactcag tgggcgatct
     7861 gaactcgtct cacatggcgc cgacggcgga ccaggccgcc gcggacgtcg aacgtggata
     7921 cgagcagact gtcgcactac agccgacctc agtcaatcta actcaccgca tatgcggata
     7981 tttcacccag atttaacccg taaacgcgga ttactgcggc cggatctccg cggcacgcgg
     8041 cggcgctcag tccactggca tcgatgactc ggacggcggc gcagttgtgg ccgcgcagca
     8101 cccgcaggtg ctgcgcggcg cccccgactg aacgaacgca tgctctacga ggacgccgac
     8161 tcctccagcg accgacccgg agtttgcccg catacccaga atgcggcgcc ggaccgggtc
     8221 accgagacag tcaaacgcgg gcatgaatcg actgtcgcac catgccgtgc cgtgagtcaa
     8281 gtctaaatcc tcatttgcgg tttgtagatc tcgttcactc cgtctctgcg tagagaaact
     8341 gtccataacc ccgctcgacc ggatcacaaa cacgtccgac ccccgctggc caaccgtgtt
     8401 tgtcctacca attcgatctc gagccagagt ccgcgtcgct ggtagggagt agctgtgctc
     8461 gctggaaggc tggcgg
//
LOCUS       DASVXZ010000057         2810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_454032, whole genome shotgun sequence.
ACCESSION   DASVXZ010000057 DASVXZ010000000
VERSION     DASVXZ010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454032"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..438
                     /locus_tag="VF788_01040"
                     /pseudo
     CDS             67..438
                     /locus_tag="VF788_01040"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
     gene            complement(592..1059)
                     /locus_tag="VF788_01045"
     CDS             complement(592..1059)
                     /locus_tag="VF788_01045"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HEX8932788.1"
                     /translation="MTLSPEDKFGIKIQNRRGRSIEQTYSLIAGTVYIVGGIVGFLVT
                     GFSNFTEMTNHALLGVFMLNPFHNVVHIGLGAFWLLAAFALTQAGTEGVNIAIGGVYA
                     LATVLGFLGYFSLLSIPSGAAGDNWLHLVTALATLIFGSGLLSATGSRQPATA"
     gene            1529..2224
                     /locus_tag="VF788_01050"
     CDS             1529..2224
                     /locus_tag="VF788_01050"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEX8932789.1"
                     /translation="MPLVLYGPVILALAACGIRRLSVLVTIGLMAAGYLTWTLTEYWV
                     HRAVFHFQPRGPRSESFVWAIHGVHHDHPNDPRRVVTSPMVSVPVGAAAGALVWLLFP
                     GALWLPFAAGWGGGYLTYDLLHAYLHVGRPRTALVRRLRARHLRHHFADDRGDFGVSA
                     PYWDYVFGTSLPARTPRPPVSNGQRQGAAVPSSGLEHATSALLRRGGGGLNVTTTTTP
                     NPSHSHLRRCVHL"
BASE COUNT          506 a          883 c          889 g          532 t
ORIGIN      
        1 tgaagttggt gggtgccgat ccggacgagc cgacttgtca ccggaacacg agcggaagtt
       61 gggccgatgg gcctgggacc ggtacgaatc ggattttctc gccgtggagg gctatccggc
      121 ccgcagcatc cgttttatac ccatccggag cgcggtgact ctcgatggac caactccttt
      181 gatctgacct tccgcggtct cgagctggtc accggcggcc aacggctgca catctacgcc
      241 gactacgaga aggccctcgc cgaacgtggc gagacgaccg agccctacga gtcctacctg
      301 taggcattcc ggcacggtat gccgccccac ggcggcttcg cccttggcct ggagcgatgg
      361 actgcgaggc tcctggaggc cggcaatatt cgacgggcga cgctgtttcc ccgggatatg
      421 aaccgggtga cgccatagcc ggacgatcct agccagacga tcgagcgctc tggtctcgaa
      481 ggattgcggc gcctggtgcc gtgcccccga cggttacctc gccgtagcgg agacagccac
      541 gcatgctgtg gcaaacgtcg ggggcacggc caatgattgt gctcgctaca tctatgcggt
      601 cgcgggttga cgactgcccg tggcactgag caggccgcta ccgaatatta gcgtcgccag
      661 agcggtcacc aagtgtagcc agttgtcccc ggccgccccg ctggggatgg acagcaaaga
      721 aaagtagccg agaaaaccga gcacggtggc cagtgcgtag acgccaccga tcgcgatatt
      781 cacgccctca gtgcctgcct gggtgagtgc gaatgccgcc agcagccaga aggcacccag
      841 tccgatgtgc acaacgttgt ggaagggatt caacatgaaa acaccgagca gcgcgtggtt
      901 ggtcatctcg gtgaagttgc taaagcctgt gacgagaaat ccgacgatcc cgccgactat
      961 gtaaactgtg ccagcgatca gcgaataggt ctgctcaatc gatctccccc tcctgttctg
     1021 gatcttgata ccgaacttgt cttctgggct aagcgtcatg tctgtcctct cccatcccca
     1081 ctgctgacgt agcacttctc ggtgcactgt gatgctttca ctggcccgac aattcccgac
     1141 cgcgggacac gatacctgct actgcgtagc ccttatgttc ggcacggctg agagggccgt
     1201 gttcacccgc ttgggaaggc tggcgacttc ggctgaggac cccggaacgg gccttgcctg
     1261 ctaccgttcg cgatgccgtt ccgcttcccg gacgaaagac gtcagcgtag gtaaggacaa
     1321 ctacggccgt tgacgagcct cacagacggg tacgaagcga cggtcatgct gtcaccggga
     1381 ctaccctgcg gcatgtcggc ggcgttcagc gatgtggcga gaacccctaa tctggtgata
     1441 tggcgccaac ccggtcggaa gtcctgagca ctgcaccgcc gatgttcagc tcgcgggtgt
     1501 tgaattcgtt gacccgcacc accctgtcgt gccgctggtg ctgtacgggc cggtgatcct
     1561 cgcgttggcg gcgtgcggca tccggcggct cagcgtcctg gtcaccatcg ggctgatggc
     1621 cgcgggctac ctcacctgga ctctcacgga gtactgggtg catcgcgcag tgttccattt
     1681 ccagccgcgt ggcccgcgga gcgaatcatt cgtgtgggcc attcacggtg tgcaccacga
     1741 tcaccccaac gatccacggc gggttgttac gtcgccgatg gtgagcgttc cggtcggtgc
     1801 ggctgcgggg gccctggtat ggctgctgtt cccgggggct ttgtggctgc cgttcgcagc
     1861 cggctggggt ggcgggtatc tcacctatga cctgctgcac gcgtatctgc atgtgggccg
     1921 cccgagaacg gcgctcgtcc gccggttgcg ggccaggcat ctgcgccacc acttcgcgga
     1981 tgaccgaggg gacttcggtg tgagcgcgcc gtattgggat tacgtctttg gcacctcgtt
     2041 acccgcccgc acaccacgtc cccccgtcag caacggtcaa cgacagggtg cagcggtccc
     2101 gagttccgga cttgagcatg caacgagcgc gttgctgcgg aggggaggag gtggcttgaa
     2161 cgtgaccaca acaaccaccc ccaacccgtc gcacagccat ctgaggcgct gcgttcacct
     2221 atagctcatt tacccaggag ctcccgggac gggaagaggc gggactggcg tgggggtggg
     2281 agtgggagtc aggggcggat ccggctgatc taggcccgaa cgctgggccg aaccggcgct
     2341 cagatcgctc ggctgggaca tagcaggact tgcggtcatt accgccacgc ccgccacgcc
     2401 tgacatcgcc gttagcgcaa gaacggacag tgctgccatc ctgatcaact tacgtccagt
     2461 gctgtgcttc atagttactc cttagaagta gttgcatcct cggaaccgca cacaccgtca
     2521 aggttcgcgt tcacgagcaa cgaccacctg cgtaggcaga aaggcggcag ttccggcgca
     2581 gccagcgcga tcttcagctc ccttcaacct tctgacgctg gttgcgcgga gttacccgac
     2641 ctcaacaggt agtaaacgtc gtccgctggc ggcagtgatg atccggaggc cttcgccgtc
     2701 ggagagtcgc tggagccagc ctgttcgcag ctcagctgcc ccaatagcgc ctgcgacggg
     2761 ggcaccgatg ccggatgccg acgcgagatc agctccgcac agagctggca
//
LOCUS       DASVXZ010000058         3393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_633071, whole genome shotgun sequence.
ACCESSION   DASVXZ010000058 DASVXZ010000000
VERSION     DASVXZ010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3393
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633071"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VF788_01055"
     CDS             <1..220
                     /locus_tag="VF788_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932790.1"
                     /translation="SMTAEQSHRFALTGQDPKGRNRTIILWQEADLVDGHVVRRVVVT
                     LDATMNTATVLTCEQATEVAQAMLAAAQ"
     gene            252..1118
                     /locus_tag="VF788_01060"
                     /pseudo
     CDS             252..1118
                     /locus_tag="VF788_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015101903.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virginiamycin B lyase"
     gene            1273..1881
                     /locus_tag="VF788_01065"
     CDS             1273..1881
                     /locus_tag="VF788_01065"
                     /inference="COORDINATES: protein motif:HMM:NF018066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate decarboxylase family protein"
                     /protein_id="HEX8932791.1"
                     /translation="MTGYPPEPWELQGQMSLTGWRVPVAALPPLSAGLEPVRAGGNAL
                     VVTAWVIYEPGGVLSYRELLVAVLARQAQRPLVTITDIWVDSVRSLYGGRELWGIPKQ
                     WASFHIDGATCDAVDDHGQPIASAAVRPIGVLPGRYRGGYTVAQQRAGDLMLIPIRFA
                     SGVRLIRISWEFARSGPLGWLVGARPIFSVSLRDFTVRFGRP"
     gene            1929..2864
                     /locus_tag="VF788_01070"
     CDS             1929..2864
                     /locus_tag="VF788_01070"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HEX8932792.1"
                     /translation="MDFRIFTEPQQGATYRDLLQVARTAEDAGYDAFFRSDHYLRIGE
                     GSGEPGPTDAWLTLAGLALQTSKIRLGTLVSPATFRLPGPLAISVAQVDQMSGGRVEL
                     GMGSGWYAEEHTAYGIPFPPLAERFDRYAEQVEIVTGLWQTPLGQRYSFAGRYYQLTD
                     SPALPKPVQRPHPPLIIGGKGARRTPMLAARFADEFNVPFSSIDQAKIQFDRVSAACA
                     EIGRDPAKVRRSAALVVAVARDDDELIRRAAAIGRKVDDLLADGIAGSPAQAADRLGA
                     WRERTGIDRVYLQLLDLTDLDQIELIAAEVMPQLR"
     gene            complement(2845..>3393)
                     /locus_tag="VF788_01075"
     CDS             complement(2845..>3393)
                     /locus_tag="VF788_01075"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8932793.1"
                     /translation="SRDRGSGPRCAVTPNDAEQGGKSELRVERAGIEDAGELLTLQRA
                     AYVTEARLYGDPELPGLTQTLDELVDELRSVVALKAVVDHRIVGAVRARVDGSVLRIG
                     RLTVSPDWQGRGVGSRLLDEIENQPDLGVDRAALFTGHRSAGNLRLYARHGYREERRE
                     KVHERLVLVHLTKPIDLSEAGA"
BASE COUNT          531 a         1187 c         1112 g          563 t
ORIGIN      
        1 gtcgatgaca gccgaacagt cccaccggtt cgccctcacg ggccaagatc ctaagggccg
       61 caaccgcacg attatccttt ggcaggaagc cgatctggtg gacggccacg tggtgcgccg
      121 ggtggtggtg acgctggacg ccacgatgaa caccgccacg gtgttaacct gcgagcaagc
      181 cactgaggta gcgcaggcga tgctagcggc tgcccaatga ccatgccgtg tacccggcgc
      241 cgccgcgcag cctgagtgtg gcgataccaa ttcagctacc ggtaggcgca gcgggcgccg
      301 gcccctacgc gatcattacc ggccccgacg gcgcgttatg gatcactctc gtgcacgccg
      361 ggcacatcgg ccgcctggaa accggtggcc ggctcgacat ccatgagctg acttccccga
      421 cctgccggcc cgcgcagatc atcgcgggcc cggatggagc cctatggttc acccgcaccg
      481 gcgacgaccg catcgggcgc atcaccaccg gtgggcaggc cacgtccttc ccgatcgcac
      541 ccggcagcgc cccgttcggc ctcaccgttg gacccgatga ggccctgtgg tacaccgcta
      601 tgggtacgga ccggattggc cgcatcacca ctggtggaga tgtcaccgag ttcctgttgc
      661 ccaccagcgg cgccatgccg tcgatgatca ccaccggatc cgacggggcc ctgtggttca
      721 ccctcaaccg ggcccatgcc atcggacgac tcagcacgac cggcgaggcc atggtccatc
      781 gcctgcccac ccctgatgcc ggtccggtcg ggatcaccgc caccgccgac gcagtctggt
      841 ttgtcgagat gggctccagc ttggtcggac gcatcagccc cgacggtcgg atcagcgagt
      901 tcccgcttcc cgaccgcgac gcccgtcccc acgccatcgt cgctgcccct gacggcggct
      961 gctggctcag cgaatggggg ccgagccggg tcgcgtacgt gagtccggac ggagacgtgc
     1021 gcgaggtcgt cctacccgca tcgagcgaac ctcacgggct cacagtcgga cccgacggcg
     1081 cagtctgggt tgccctggag gccgtgccgt cgctcgcatc gacctggaat ccgcctgaga
     1141 ttctccgctc gccacgacta gcacacgggt caggaccgag ttcgccccta cgattggcgc
     1201 cgggactgaa cagcctaggt tccaggtcgt catggaccga gatctccaca acgagcgaac
     1261 gagacgagcg gtgtgaccgg gtacccaccg gagccctggg agcttcaggg tcagatgtcc
     1321 ctgaccggct ggcgggtgcc ggtggcggcc ctgcccccgc tcagcgcggg cctggaaccg
     1381 gtgcgagccg ggggcaacgc gctggtcgtc accgcctggg tgatctacga gccgggcggg
     1441 gtgctttcct accgcgagct gctggtagcc gtcctcgcac gacaggctca gcgaccgctg
     1501 gtgacgatca cggacatctg ggtggacagc gtccgctcgc tgtacggcgg ccgcgagctg
     1561 tggggtatcc ccaagcagtg ggcgtccttc cacatcgacg gggccacctg cgacgcagtt
     1621 gacgaccatg gccagcccat cgccagcgcc gccgtccgac cgatcggcgt actacccggc
     1681 cgttaccgag gtggctacac ggtggcccag cagcgcgccg gtgacctcat gctcatcccg
     1741 atccgtttcg catccggcgt gcggttgatc cggatcagct gggagttcgc gcgcagtggt
     1801 ccactggggt ggttggtcgg cgcccgcccg atcttctccg tgtccttgcg cgacttcacg
     1861 gtgcgcttcg gacggccgtg agccgggcgc cctgcgcggc gaggccaacc gcattagcct
     1921 gacgagtcgt ggacttcagg atcttcaccg agcctcagca aggcgccacc taccgcgatc
     1981 tgctgcaggt tgcgcggacc gcggaggatg ccggttacga cgctttcttc cgttccgacc
     2041 attacctgag gataggcgaa ggttccgggg agcccggccc gaccgatgcc tggctgacgc
     2101 tggccgggct ggcgctgcag accagcaaga tcaggctggg cacgttggtg agtccggcca
     2161 ccttccggct acccggcccg ctcgctatca gcgtcgcgca ggtggaccag atgtccggtg
     2221 gccgggtgga gctgggaatg ggcagcggct ggtacgccga ggagcacacc gcctacggca
     2281 tcccgttccc gccgctggcc gagcggttcg accgctatgc cgagcaggtc gagatcgtca
     2341 ccgggctgtg gcagacgccg ctggggcagc ggtactcctt cgctgggcgc tattaccagc
     2401 tcaccgactc tccagccttg cccaaaccgg tgcagcgtcc gcacccgccg ctgatcatcg
     2461 gcggtaaggg tgctcgccgg accccgatgc tcgccgcgcg attcgccgac gagttcaatg
     2521 tgccgttcag ctccatcgac caggcgaaaa tccagtttga ccgggtcagc gcggcatgcg
     2581 ccgagatcgg ccgcgacccg gcgaaggtcc gtcgttccgc tgcgctcgtt gtcgcggtcg
     2641 cccgcgatga cgacgagctg attcgccgtg ccgcggcgat cgggcgaaag gtagatgatc
     2701 tgctcgccga cggcatcgcc ggatcaccgg cgcaggccgc tgatcgtctc ggtgcttggc
     2761 gggagcgcac cgggatcgac cgggtctacc tgcagctgct ggatctgacc gacctggatc
     2821 agatcgagct gatcgccgca gaggtcatgc cccagcttcg ctgagatcga tcggcttggt
     2881 cagatggacc agaaccagac gctcgtgcac cttttcccga cgctcttcac ggtagccgtg
     2941 gcgcgcgtag aggcggaggt ttcccgcgct gcggtgcccg gtgaacaggg cagcccgatc
     3001 gactcctagg tccggctggt tctcgatctc gtcgagtagg cgggatccca ccccgcggcc
     3061 ttgccagtca ggtgacacgg tcagacgtcc gatgcgcagt accgagccat caacccgggc
     3121 tcggaccgcc cccacgatcc ggtggtcgac caccgccttc aacgccacca ctgagcgcag
     3181 ctcgtccacc agctcgtcga gggtctgcgt caggcccggg agctctggat caccgtaaag
     3241 gcgggcctcg gtcacatatg ccgcgcgctg caaggtgagc agctctccgg catcctcgat
     3301 acccgctcgt tcgactcgaa gctcactctt gccgccttgt tcggcatcgt tgggtgtcac
     3361 agcacagcgc ggacccgagc cgcgatctcg cga
//
LOCUS       DASVXZ010000059         1850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_96000, whole genome shotgun sequence.
ACCESSION   DASVXZ010000059 DASVXZ010000000
VERSION     DASVXZ010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96000"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(195..1427)
                     /locus_tag="VF788_01080"
     CDS             complement(195..1427)
                     /locus_tag="VF788_01080"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8932794.1"
                     /translation="MERIVARAGGLDVHKDVIVAEVHLPGGVLKRGRFATTTSGLLVL
                     RDWLVELGVTRVGIESTGVYWKAPYYLLEDAMEVWLLNARHMRNIPGRKTDVSDASWI
                     CQLIEFGLVRPSFVPPKPIRELRNLTRYRKAQIEERTRETQRLDKILQDAGVKLSSVA
                     SDLLGKSSRAMLDALVAGTTDTTVLADLARGKLRKKIPALREALTSRFSGHHAVIVTS
                     ILSKLDFLDELITSLSTEIEHAITPFAHQIHLLDTIPGIDQRTAQGLLAEIGADMSVF
                     ATAARLASWAGVCPGNHESGGRSRSGATRKGPKWLGIYLHDAAMGALRTKNTYLAAQY
                     ARLRPRLGHAQALVAVEHSILVSIFYMLQRNQSYHDLGADYFIRREDPARRARKLIRQ
                     LEAIGYTIQAQPPPPAAA"
BASE COUNT          300 a          561 c          648 g          341 t
ORIGIN      
        1 gtgaggtcgt tgttcatcgc caaggtcagc tcgttgatca tctcgccggc gcagtgtccg
       61 gcgatatggg ctccaatcag ccgtcgtctg ccgtcgatga ggaacttcat cagcccgacc
      121 gtctccgctt cggtgacggc gcgctcattg tgactgaaga gaaaacaacc ggaccacgcg
      181 gggtcttgct gctgctatgc ggcggccggg ggtggtggtt gagcttggat ggtgtagccg
      241 atggcttcga gttggcggat gagtttgcgt gctcgtcggg cggggtcttc gcggcggatg
      301 aagtagtccg cgccgaggtc atggtaggac tggtttcgtt ggagcatgta gaagatcgat
      361 acgaggatgc tgtgctcgac ggcgacgagg gcttgggcgt gccctaggcg gggacggagc
      421 cgggcgtact gggcggccag gtaggtgttc ttggtgcgga gggcacccat ggccgcgtcg
      481 tggaggtaga tgcccagcca cttgggccct ttgcgggtgg ctcccgagcg ggaccggccc
      541 ccggactcgt ggttacccgg gcagaccccg gcccaggacg ccagccgggc ggcggtggcg
      601 aacacgctca tgtcagcgcc gatctcggcc agtagccctt gggcggtgcg ttggtcgatg
      661 cccgggatgg tgtccagcag gtggatctga tgggcgaaag gggtgatcgc gtgctcgatc
      721 tcggtggaca ggctggtgat cagctcatcg aggaagtcca gcttggagag gatcgaggtc
      781 acgatcaccg catgatggcc gctgaatcgt gaggtcaacg cctcccgcag ggcggggatc
      841 ttcttgcgta gcttgcctcg cgccagatcg gccagcaccg tggtgtcggt ggtgccggcg
      901 accagagcat ccagcatggc ccggctggac ttgccgagca ggtcgctggc caccgaggat
      961 agcttcaccc cggcgtcctg caagatcttg tctaggcgct gggtctcgcg ggtgcgttcc
     1021 tcgatctgcg ccttgcgata gcgggtcagg ttccgcagct cccggatcgg cttcgggggc
     1081 acgaacgagg gccgtaccag cccgaactcg atcagctgac agatccacga ggcgtcagag
     1141 acgtccgtct tgcggcccgg gatgttgcgc atgtgccggg cgttgagcag ccagacctcc
     1201 atcgcgtctt ccagcaggta gtagggggcc ttccagtaca ccccggtcga ctcgatcccc
     1261 acccgcgtca ccccgagctc aacgagccaa tcccgcagca ccaacaaccc cgacgtcgtc
     1321 gtggcgaacc ggccccgctt caggacccca ccgggcagat gcacctcggc aacaatcaca
     1381 tccttgtgca cgtccaggcc cccggcccgc gccacgatcc gttccactcg cctcgcctcc
     1441 ttgattaaga ccgcccggga gggcctcaca tcacggagtc tgaagatcgc gctcgaagcg
     1501 gcagttcacg gcgcccaaga ccctcacgtc tggctgtaat acgacctcgc ccgcgccaag
     1561 actcatcgac gtcgaccgga cggcaccagc gagttttccc gagatcacgc cgacccgcca
     1621 gggtccccga tggctgtaat ctcaacggtg taactcctga gactggaggg gcacctgtga
     1681 ctgttgtggc gatggatgtg tccgctgagc cggcggagag ttcggatgag cagttggtcc
     1741 ggcagctggt ggagcgggcc cgggcggagg gtctgaagct gaccggggag ggtggcctgc
     1801 tgggtcggtt gaccaaggtg gtggtcgagt ccgctctgga gggtgagatg
//
LOCUS       DASVXZ010000060         4772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_96093, whole genome shotgun sequence.
ACCESSION   DASVXZ010000060 DASVXZ010000000
VERSION     DASVXZ010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4772
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96093"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..981
                     /locus_tag="VF788_01085"
     CDS             73..981
                     /locus_tag="VF788_01085"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8932795.1"
                     /translation="MSVVPSAVPLELQPPDQPELAVENRRVSVDGLSTQYLEAGTGSP
                     VLLLHGYGQSATSWRWIIPALARTHRVLALSLPGHGDSAPAIDGYAPGRDLTPFVTGF
                     LDTLGVGLLDVVGHSVGGAVALRVALADPARVRTLTLVDSAGLGREVNPLFALAALPI
                     LGELGILLSRLPGGDLQRTTMSTAMLFAQPWRAPAEFITEQHALGWRAGHLEAATATA
                     RALFDLNGQREILLNQLHTLTMPTLVIWGACDYVLPVYQAQTAVDRLPQGQLSLFPDC
                     GHLPHVECPDQFTAVLSKFLTEHHSR"
     gene            1647..2087
                     /locus_tag="VF788_01090"
     CDS             1647..2087
                     /locus_tag="VF788_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932796.1"
                     /translation="MLLNCGDMAMWRWVSTRTRRLCCFRSPLFQYFPAYLTAAVNHFN
                     ELWTKADSMAEFIENLQDAVDYTESNIDYESSWLAIYEYALPQEDEELKTTIEPCESG
                     GGPTEGDQNQAVEITRYLDIGTCTGRYPIQLRSWVTPNGKDSRR"
     gene            complement(2740..3495)
                     /locus_tag="VF788_01095"
     CDS             complement(2740..3495)
                     /locus_tag="VF788_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8932797.1"
                     /translation="MLTAEEEKGAVIVTGASRGIGAAIAEKVAEDGYGVLVNYARDAE
                     GAQSVVSTIRARGGRALAVRADVATPGDIADMFQRAKQELGPLAALVNNAGISGTKAR
                     IDEQDADELARLIRVNVVGPMLCAKHAVQAMSTAHGGTGGSIVNVASVAARTGGLSGI
                     VPYAATKGALVTFTRGLSNEVASEGIRVNSVSPGIIATDMITAVPDAQQAAAASPLGR
                     MGRPDEVAATVAWLISPAASFITGSDITVSGGR"
     gene            4153..4545
                     /locus_tag="VF788_01100"
     CDS             4153..4545
                     /locus_tag="VF788_01100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932798.1"
                     /translation="MKLVWRRRRQDTLTKSSNPTPSAALAGAQCRARLAGWLVPIIRE
                     HLDRYPLPAETPVFANTVGKPLRRTLFLARVWRPALARAGMLGTLTVIGDNTVRAGWT
                     DDTGAKLAKEFATSNVKTCGCGSVLPSF"
     gene            complement(4505..>4772)
                     /locus_tag="VF788_01105"
     CDS             complement(4505..>4772)
                     /locus_tag="VF788_01105"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8932799.1"
                     /translation="VEYHATHIYLTRIEIQPDHQGHGIGSQLVGDLLDQAATSNRSVV
                     LDVFSINHRAQSFYHRLGFTPDGPREPSNIKVRMTATPNHIHRS"
BASE COUNT          873 a         1476 c         1469 g          954 t
ORIGIN      
        1 cggtggtcgg tgtcgtctcg gcccccggtg acgcggtcgg ttctcacgtg acacgcacag
       61 taggggagct gcatgtcggt cgtaccgagc gctgttccac tcgagctcca acccccggac
      121 cagcccgagc tcgctgtgga gaaccgtcgg gtcagcgtgg atgggctcag tacccagtac
      181 ctggaagccg ggactgggtc accggtgttg ctgctgcacg gctacgggca gagcgccacc
      241 agttggcggt ggatcatccc ggccctcgcc cggacacatc gggtgttggc cctgagcctg
      301 cccggtcacg gcgacagcgc cccagcgatt gatggctacg ccccaggccg agacctgacc
      361 ccgttcgtga ccggcttcct cgacaccctc ggagtcggac tgctcgacgt ggtcggacac
      421 tccgtgggcg gtgcggtcgc gctgcgggtc gccctggccg acccggcccg ggtgcgcacg
      481 ctcaccctgg tcgacagcgc gggcctgggc cgcgaggtca atcccctgtt tgctctggcc
      541 gccctgccca tcctgggcga actggggatc ctgctcagcc gcctgcccgg cggcgacctc
      601 cagcgcacga cgatgtccac cgcgatgctt ttcgctcagc cctggcgggc gcccgccgag
      661 ttcatcaccg aacaacacgc gctgggatgg cgcgcaggcc acctcgaggc cgccaccgcc
      721 acggcccgcg ccctgttcga tctcaacgga cagcgcgaga tcctcctcaa ccaactccac
      781 accttgacga tgccgaccct ggtcatctgg ggtgcatgcg actatgtact acccgtctac
      841 caggctcaga ccgcggtcga ccgcctaccc caagggcagt tgtcgctgtt ccctgactgc
      901 ggacaccttc cccacgtgga gtgccctgac cagttcaccg ccgtactcag caagtttctc
      961 accgagcacc acagcaggta gccgatcgca cgccccactc cacatcttcc gctaaccgaa
     1021 cggcgcatta cggtgtacga gctgggccac ccgtgttccc cactccgaaa ttccggccag
     1081 cacgtccggg cgcaattcag attgtccgta agcgagcgct tcgagagccc tctcgatggg
     1141 gcaaaccgct acgctggacc tgttccactc ccgagtcggc gccttcaccg tcatcaacga
     1201 tgctatccgc gcagctggac cgacaacacg tgagcaacac tgaccaagga ttcgtgaccg
     1261 agcgagaagc tgtattgcac atcgccaagt cctgcgccgg ccgtctacat ttacatgatc
     1321 tcaggcatta gtattccact ggctcgtcga tgacggcgta ccggtgaaca tggtgcagcg
     1381 cgcatttggc cacgaacggt catccgccac gctggatctc tcatctctac acccgacgca
     1441 ccgacgatca cggccgcatc cttcggtcac tcgatgacgt ctgctggtga tcggccgtga
     1501 tcacgcgact aagatccacg gtgaaccttc aataacactt ttgagctatg gtggtgctgg
     1561 tgggcggtga tactgggatc gaaccagtga cctcttcggc gtgaacatca ttggccctgc
     1621 gtcgatgtgc tggcgagcgc cattgcgtgc tgctgaactg cggcgatatg gcgatgtggc
     1681 gatgggtatc gacccgtacg cgccggttgt gctgcttccg ctccccactg ttccaatatt
     1741 tcccagctta cctgacagca gccgtcaacc acttcaacga gctctggaca aaggctgatt
     1801 ccatggcgga gtttatcgaa aacctgcaag atgccgtgga ctacactgag tcgaatatcg
     1861 actacgagtc gagctggctc gcaatctatg aatacgcact tccccaagaa gatgaggagc
     1921 taaagacgac gatagaacct tgcgagagtg gaggaggtcc tacggaagga gaccaaaacc
     1981 aagctgtcga gataactcga tacctggata ttggcacgtg taccggtcgt taccccatcc
     2041 aattgcgatc gtgggtgaca ccgaacggca aagattctcg gcgttgatga aattacgact
     2101 gtattcgatt gtcgctcgag atttggatat caggggaaag ttcgatctta tcacctgcat
     2161 gctatggaca ctgccccgtt tcgaggggac cgttcacgaa cttatgagga ccgcctacag
     2221 cggcattgag ccggatggcc acactgctca gcgacaaagg atcgctgttc ttaggaacgt
     2281 ggtcagaaca cgcatgcaaa aaccataaaa tgctcgaaat ttacagtcaa ggagaccggg
     2341 aacgccttgc ggactggtca ccgaacacag cgggtgcagc cagagctgcg cctcgaccgg
     2401 acgtgctgac gacgcgctga gtgatctagg taatctttcg ttcggcaact gtgggggtct
     2461 tcggttggtt caggcctgac aggcctgtca cgcgccatcg ttgttgcgct accgacgttc
     2521 gtcttcggcc tgcggccgcg ttcacagccg tcttgatcag gatggatgtc ctgggcggcg
     2581 gggccagaag tgcccgagcg cgcgcaactg tgacgctgcc tgcaccggtg acgctggagc
     2641 aatgctcagt cttgtggcgg cccgggcgtg ggcccgctcc atgggcaggc gggtcgatgg
     2701 cgaaaaggac ggcgtcgttc gaggtggggt gctggtcaat taacggccgc cggaaacggt
     2761 gatatcactg ccggtgatga acgatgccgc cggcgaaatc agccacgcca cggtggccgc
     2821 aacctcgtcg ggtcggccca tgcgaccgag cgggctggct gcggcggcct gttgggcgtc
     2881 cgggactgcg gtgatcatgt ccgtggcgat gatacctggg gacacgctgt tgacgcggat
     2941 cccttcggag gcgacctcgt tggacaggcc acgggtgaac gtcaccaggg cacccttggt
     3001 ggccgcgtag ggcacgattc ctgacaggcc gccggttcgg gcggcgaccg aggcgacgtt
     3061 gacgatcgat ccgccggtgc cgccgtgcgc cgtcgacatc gcctgcacgg catgcttggc
     3121 gcacaacatg gggcccacga cgttaactcg gatcaaccgg gccagctcgt cggcgtcctg
     3181 ctcgtcgatc cgtgctttgg tgcccgatat cccggcgttg ttgaccagcg cggccagcgg
     3241 cccaagctcc tgtttggctc gttggaacat gtccgcaatg tcgcccggtg tcgccacgtc
     3301 agcgcgcacg gccaaggccc ggccaccgcg tgcgcgaatg gtggagacca ccgattgcgc
     3361 tccctcggcg tccctcgcat agttgacgag cacgccgtac ccgtcctcgg ccaccttttc
     3421 ggcgattgcg gcgccgatac cccggctagc gccagtgacg atcaccgcgc ctttctcctc
     3481 ttcagctgtc agcatttttt gacctcccgc cgttagctgt gtttgccatg ttgatgagca
     3541 cctccaactc atcggtgatg tcgggcccgg tcggttggta ggatagacga ttttcgtgat
     3601 ggcttcccct gcgaacactg ggcggcgctc acgtagtatc aaaccgcggc atgttggacg
     3661 tgtgtctggt cgtgtgcgga ggattgagag actcgccgtt cttagttggc tgatattagc
     3721 tgcaccgtta ctcatagcgt tgtcgccaac tacgacggca gtcgaggtag tttgtgagtt
     3781 cagcgcagcg gaaatctgcg gctgtccatg gctgattgat gtgttcaccc caccatacgc
     3841 aagacaggcg tccatctcga tctccggagc gagcaacacc ctcaccgtgt cagtgtgtag
     3901 gcagagtcct cgaacgcgtc taaggtagtc cagtcggtgt cgatgagtac tttgccggtt
     3961 gcttcgcctt ggcctagtat caatccgggg tagatccttt ggggtaagcg cacgacttgc
     4021 cagccgggga caacagcatg ctggtaatgg ggtatgcggc cgatgagggt gcttatgacg
     4081 tcgtcgagga gggtgccgta gacgaagaat ttattggttt ccaccgatgg ctgggccggt
     4141 cggccagagt ttgtgaagct tgtttggagg cgccgtcgac aggacacgct gaccaagtca
     4201 tcaaacccta ccccaagcgc agcgctggcc ggcgcacagt gccgtgccag gctggctggc
     4261 tggctggtac cgatcatccg cgaacatctg gaccggtatc ccctcccagc cgaaacacca
     4321 gtcttcgcca acacggtcgg caaaccgctg cgccggaccc tgttccttgc ccgagtctgg
     4381 cggccagcat tggcgcgagc gggaatgctc ggcaccctca ccgttattgg cgacaacacc
     4441 gtgcgggccg gctggaccga cgacacagga gcaaaattag ccaaggaatt cgcgacgagc
     4501 aatgtcaaga cctgtggatg tggttcggtg ttgccgtcat tctgaccttg atattgctgg
     4561 gttcgcgtgg accgtcggga gtgaacccga gccgatggta aaagctctgg gctcggtggt
     4621 tgatcgagaa cacgtcgagc accacggacc ggttgctggt agcggcctgg tcgagtaggt
     4681 cgcccacgag ttggctaccg atgccgtggc cttggtgatc gggctggatt tcgatccgcg
     4741 tcaagtagat gtgtgtggcg tggtactcga cg
//
LOCUS       DASVXZ010000061         2608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_813244, whole genome shotgun sequence.
ACCESSION   DASVXZ010000061 DASVXZ010000000
VERSION     DASVXZ010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813244"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..966
                     /locus_tag="VF788_01110"
     CDS             <1..966
                     /locus_tag="VF788_01110"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8932800.1"
                     /translation="EDLEVTYQQAVRGESLQLDAKTTSFRDWANRLSEYVAKGSFDHE
                     LDYWAGALETHRLPVDRVAHEPGGLPCVVSVLLDVEDTESLLRSAPAAYRTRINDVLL
                     SALAWTLSQWTGQSRVSIDLVGHGREEILDGVDLSRTVGAFSTIFPVVLTLPDGAQPR
                     WRDLIRAVRHQLRTVPHNGIGFGALRYLGTPEVRQRLALAGPGPQIAFTYLGEWEAVS
                     QRSGPPESGSPESGSAESGSAEVGVPDLRSSLYQDPHGSIGQASDPADPGPYLLEVVG
                     AVQDGQLSFSWRYRPDLHHQASVQAVADNFAETLKAIARECRGPR"
     gene            963..2363
                     /locus_tag="VF788_01115"
     CDS             963..2363
                     /locus_tag="VF788_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8932801.1"
                     /translation="MIPEQSAGASPERNIEPSSGTNTVPETHAVPLSRNRSYQLLWVS
                     QVLSGVGISASVIAFPLLVLALTGSAAKSGLVLGAITLAQLLAGLPAGALVDRWNRKT
                     IMLTCEATQTIAAISLVGALWWNVVPIGLLIVVGAVMGICAALFRPAEDAYVSRVVPA
                     EQLSAAVALNAARGSVAQLSGTAAGGFLFAVARFVPFIADAVAHGVACILLVFLRVPP
                     RQGQPAPDRHLSREILVGLRWVWANRHIRVTAQCAIVLNLFISAFYLIVIVLAQARGI
                     SSGQIGLIAAMLGVGGLVGSVAASGLSQRVSPYASIITVFWGLGALTLAAAFVRSGWL
                     LGLLFAAMALLPPTANTTIITRQLLLTPDDMRGRLSSVLGIATGVAAALGPVLGGLLV
                     AALSGTNAVLVCAGGIAAIALVATLSPTLRSFPRQPVVAQQPSHAQPPGPEPEGITET
                     ISVPTGDRQNVAKKGD"
     gene            2368..2571
                     /locus_tag="VF788_01120"
     CDS             2368..2571
                     /locus_tag="VF788_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020636057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family NRPS accessory protein"
                     /protein_id="HEX8932802.1"
                     /translation="MDDDAKYEVLRNDEDQYSLWLVGLEVPAGWERVGKEGTKDECSA
                     YVDEVWTDMRPRSLREQMDGAQS"
BASE COUNT          384 a          835 c          917 g          472 t
ORIGIN      
        1 gaggacctcg aagtgaccta ccagcaggcg gtgcgcggcg agagcctcca gctggacgcc
       61 aagacgacct ccttccggga ctgggcgaac cgtttgagtg agtatgtggc caagggcagc
      121 tttgaccacg agctggacta ctgggcaggt gcgttggaaa cgcatcggtt gccggtggac
      181 cgggtggctc acgagccagg cggactgccg tgcgtggtgt ctgtactcct ggacgtcgag
      241 gataccgagt cgctgctccg atcggccccc gcggcctacc gcacccggat caacgacgtc
      301 ctgctcagcg cgcttgcgtg gacgctatcc cagtggaccg ggcagagccg ggtgtcgatc
      361 gacctggtgg ggcacggtcg tgaagagatc cttgacggcg tcgatctgtc ccgcactgtt
      421 ggcgccttca gcaccatctt cccggtagtg ctgacgctgc ccgacggtgc gcaaccccgt
      481 tggcgggacc tgatccgggc ggtgcgccac cagctgcgga ccgttcctca caatgggatc
      541 ggcttcgggg cgctgcgcta tctgggcacc cctgaggtcc gtcagcgcct cgctttggcc
      601 gggccgggtc cccagatcgc gttcacctac ctcggcgagt gggaagcggt gtctcaacga
      661 tccgggcccc ctgaatctgg gtcgcctgaa tctgggtccg ctgagtccgg gtccgctgaa
      721 gtcggagtcc cggatctgcg gagcagcctc taccaggacc cgcacggctc gatcgggcag
      781 gccagtgatc ccgctgatcc gggcccgtac ctgctcgaag ttgtgggcgc ggtacaggac
      841 gggcaactga gcttctcctg gcgctaccgg cccgacttgc accaccaggc cagcgtccag
      901 gcagtcgcgg ataacttcgc cgagacgctc aaggccatcg cgcgggaatg ccggggtccg
      961 cggtgatccc cgagcagagc gctggggcca gccccgagag gaacatcgag ccgagttccg
     1021 ggacgaacac cgtgcccgag acgcacgctg tgcccctgtc ccgcaaccgc agctaccagt
     1081 tgctgtgggt cagccaggtg ctctccggtg tcggaatcag cgcttcagtg atcgccttcc
     1141 cgctgctggt gctcgcgctc accggttcgg cggccaaatc cggactcgtg ctcggggcga
     1201 tcacgctggc ccagctcctt gccggactac cggcgggggc gctggtggac cgctggaatc
     1261 gcaagacgat catgttgact tgcgaggcga cgcagactat cgcggcgatc agcctcgtgg
     1321 gggccctgtg gtggaacgtg gtcccgatcg ggctcctgat cgtcgtgggt gccgtgatgg
     1381 ggatctgtgc tgcgctgttc cgaccggccg aggacgccta cgtgtcccgg gtggtgccgg
     1441 ccgagcagct gtcagcagcg gtggcgctga acgcggcgcg cgggtccgtg gcgcagctgt
     1501 ccggcaccgc ggcgggcggt ttcctcttcg ccgtcgctcg cttcgtgcct ttcatcgcgg
     1561 atgcggtggc ccacggggtg gcctgcatcc tgctggtatt cctccgggtg ccgccgcggc
     1621 agggacaacc ggcgccggac cgtcacctga gccgggagat cctggttggc ctgcgatggg
     1681 tgtgggcgaa ccggcacatc cgggtgaccg cgcagtgcgc gatcgtgctc aatctgttca
     1741 tcagcgcgtt ctatctcatc gtcatcgtgc tggcccaggc tcgaggaatc tcctctgggc
     1801 agatcggcct gatcgcggcg atgctggggg tgggcgggct cgtgggctcg gtagcggcat
     1861 cgggtctatc gcagcgggtc agcccctacg cttcgatcat cacggtgttc tgggggctgg
     1921 gggcgctcac tctcgcggcg gccttcgtcc gcagcggatg gctgctgggt ttgttgttcg
     1981 ccgccatggc gttgctgccg cccaccgcga acacgacgat catcacccgg cagctgctgc
     2041 tcacccccga tgacatgcga ggtcgcctga gcagcgtgct gggcatcgct accggtgtgg
     2101 ccgccgcgct gggcccggtg ctgggcgggt tgctggttgc ggcgttgtcc ggcaccaacg
     2161 cggtgctggt gtgcgccgga ggcatcgcgg ccatcgcgtt ggtggcgacg ttgagcccta
     2221 ccctgcgcag cttcccccgg caaccggttg tcgcccagca accttctcac gcacagcctc
     2281 cgggtcccga acccgagggg ataacagaaa ccatttcggt ccctaccggg gaccgacaga
     2341 atgttgccaa gaaaggagac tgaaaatatg gacgacgatg cgaagtacga ggtcctgcgt
     2401 aacgacgagg accagtactc gctgtggctc gttggtctcg aggtgccggc aggatgggag
     2461 cgagtgggta aggaaggcac caaggacgag tgctccgcct acgttgatga ggtgtggacg
     2521 gacatgcggc cgcgcagcct gcgtgagcag atggacggtg cgcagtctta accgggggct
     2581 ccatcctgac cagcgggccc actgtctg
//
LOCUS       DASVXZ010000062         2490 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_454848, whole genome shotgun sequence.
ACCESSION   DASVXZ010000062 DASVXZ010000000
VERSION     DASVXZ010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454848"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VF788_01125"
     CDS             <1..414
                     /locus_tag="VF788_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HEX8932803.1"
                     /translation="KQLGVGHEETAGRPGSTGSITLEHAECLAACDLAPVLQVNYEFY
                     DNQTPESAVALVDALARGERPAPTRGASLTDWQTVELELAGFFGEPEQLREAVDAPSA
                     APETLAGNRLAEEKGWQAPAMPDKAPPLPTVSEKK"
     gene            446..1774
                     /gene="nuoF"
                     /locus_tag="VF788_01130"
     CDS             446..1774
                     /gene="nuoF"
                     /locus_tag="VF788_01130"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HEX8932804.1"
                     /translation="MTERTLTPVLTRRWLSPKSWTLDTYTELEGYTAVRTALAAHPDR
                     LIQLIKDSGLRGRGGAGFPTGMKWGFIPQAKPGEQPTGPAAKPTYLVINADEGEPGTC
                     KDVPLMMADPHSLIEGCIITSYAIRAHQCYIYVRGEMVHCNRRLHQAVTEAYQAGYLG
                     KDILGSGFDLDIIIHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATSGLYAAPTV
                     VNNVETICSVPYIVNGGSEWFRQMGTEKSPGPKIYSISGHVHRPGQYEAGLGTTLREL
                     LELAGGMKGQLKFWTPGGSSTPLLTAEHLDVPLDFEGAAAAGSMLGTTAVMVFNTSVS
                     VPWAVMKWTEFYKHESCGKCTPCREGTYWLTQILQRMVRKEGTPADVETMLDVCDNIL
                     GRSFCALGDGAASPITSGIKYFRQEFLDLCVEQPGVGRPAQQAKFAGSAR"
     gene            1771..>2490
                     /locus_tag="VF788_01135"
     CDS             1771..>2490
                     /locus_tag="VF788_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX8932805.1"
                     /translation="MTLAKQADNSSGTDRAVPEGHVRLTIDGREIDAPKGELVIRTCE
                     RLGIIVPRFCDHPLLDPVAACRQCLVEVEMGGRPMPKPQPSCALTVADGMVVKTQETS
                     PVADKAQQGVMELLLVNHPLDCPICDKGGECPLQNQAMSNGRSDSRFLDTKRTFAKPI
                     PISTEVLLDRERCVLCARCTRFSEQIAGDEFIDMLERGSDQQVGVAADKPFQSYFSGN
                     VIQICPVGALTSAGYRFRSRPF"
BASE COUNT          434 a          831 c          824 g          401 t
ORIGIN      
        1 aagcaactcg gggtcgggca cgaggagacc gccggccggc caggttcgac gggttcgatc
       61 accctggagc acgccgagtg cctcgctgcc tgcgacctgg cgccggtgct gcaggtgaac
      121 tacgagttct atgacaacca gaccccggag tcggccgttg ctctggtgga tgcgttggcc
      181 cgaggcgaac gaccggcgcc gacccgcggg gcgtcgttga ccgactggca gaccgtcgag
      241 ctggagctgg ccggcttttt cggcgagccg gagcaactgc gggaggcagt ggacgcaccg
      301 tcagctgcgc ccgagacgct ggccggcaac cggctcgccg aggagaaggg ctggcaggct
      361 ccggcgatgc ccgataaggc cccgccccta ccgaccgttt ccgagaaaaa gtgatgggcg
      421 tacaaccgct agcaggagga cagctgtgac cgagcggacg ctcaccccgg tgttgacccg
      481 gcggtggctc tcgcccaagt cctggacctt agacacctac acggaactcg agggctacac
      541 cgcagtgcgc accgcgttgg ccgcgcaccc tgaccggctg atccaactga tcaaggactc
      601 gggcctgcgg ggacgtggtg gagccggttt tcccaccggc atgaagtggg gcttcatccc
      661 gcaagccaaa ccgggggagc agcccaccgg cccagcggcc aagcccacct acttggtgat
      721 caacgcggac gagggtgagc cgggcacgtg caaggacgtg ccgctgatga tggccgatcc
      781 gcactcgctg atcgaaggtt gcatcatcac cagctacgcc atccgggccc accagtgcta
      841 catctacgtc cggggcgaga tggtgcactg caaccgcagg ctgcaccagg ccgtcaccga
      901 ggcctaccag gccggatacc tcggtaagga tatcctcggt tccggattcg acctcgacat
      961 catcattcac gccggcgccg gcgcctacat ctgcggtgaa gagaccgcgc tgctcgactc
     1021 gctggagggt cggcgcggtc agccccggct caagccgcca ttcccggcca cctccgggct
     1081 ctacgccgcg cccaccgtgg tgaacaacgt cgagaccatc tgcagcgtgc cttacatcgt
     1141 caacggtggg tcggagtggt tccgccagat gggcaccgag aaatcgcccg gaccgaagat
     1201 ctactcgatt tccgggcatg tgcatcggcc gggacagtac gaggccggcc tgggcaccac
     1261 gttgcgcgaa ctgctggagc tggccggcgg gatgaaaggc cagttgaagt tctggacgcc
     1321 gggcggatcg tccactccgc tgctcaccgc cgaacacctg gacgtgccgc tcgatttcga
     1381 aggcgcggcg gcggctggct cgatgctggg caccaccgcg gtgatggtgt tcaacaccag
     1441 cgtcagcgtg ccctgggcgg tgatgaaatg gaccgagttc tacaagcacg agtcgtgcgg
     1501 taagtgcacc ccgtgccgcg agggcaccta ctggctcacc cagatcctgc agcggatggt
     1561 gcgcaaggag ggcacccctg ccgatgtaga gaccatgctg gacgtctgcg acaacatcct
     1621 gggtcgctcg ttctgcgcgc tcggcgacgg cgctgccagc cccatcacga gcgggatcaa
     1681 gtatttccgg caagaattcc tggacctgtg tgtcgagcaa cccggcgtcg gcaggcccgc
     1741 tcagcaggcc aagtttgcag ggtcggcccg atgacgctgg caaagcaggc cgacaattcg
     1801 tccgggactg accgtgccgt tcctgagggg cacgtccggt tgaccatcga cggtcgcgag
     1861 atcgatgcgc ccaagggcga gctggtgatc cggacctgcg agcggctggg catcatcgtt
     1921 ccgcgattct gtgaccaccc gctgctcgac ccggtcgccg cttgccggca gtgtctggtc
     1981 gaggtggaga tgggcgggcg cccgatgccc aaaccgcagc ccagctgcgc cctcaccgtc
     2041 gccgatggca tggtcgtcaa gactcaggag acctcgccgg tggccgacaa ggcgcagcag
     2101 ggtgtgatgg agttgctgct ggtcaaccat ccgctggact gcccgatctg cgacaagggc
     2161 ggtgagtgcc cgctgcagaa tcaggcgatg tccaatggcc ggtcggactc ccggttcctc
     2221 gacaccaaac gcaccttcgc caaacccatc ccgatctcca ccgaggtgct gctggaccgg
     2281 gagcgctgcg tgctctgcgc ccgctgcacc cgcttctccg agcagatcgc cggggatgag
     2341 ttcatcgaca tgctggagcg cggttcggac cagcaggtcg gggtggccgc cgacaagcct
     2401 ttccagtcct acttctctgg caacgtcatc cagatctgcc cggtcggcgc gctgaccagt
     2461 gccggctacc gcttccggtc ccggcccttc
//
LOCUS       DASVXZ010000063         2701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_813494, whole genome shotgun sequence.
ACCESSION   DASVXZ010000063 DASVXZ010000000
VERSION     DASVXZ010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813494"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VF788_01140"
     CDS             complement(<1..348)
                     /locus_tag="VF788_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004560364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEX8932806.1"
                     /translation="MSETVSQPQPWLRRMSGRDPGERHRASTPLELLFDLTFVVAVAR
                     AAAELHHALAEGHVAHALLGYVMIFFGIWWAWMNFTWFASAYDTDDVVYRLVVLVQMA
                     GALVVAAGLPRYVE"
     gene            529..1569
                     /locus_tag="VF788_01145"
     CDS             529..1569
                     /locus_tag="VF788_01145"
                     /inference="COORDINATES: protein motif:HMM:NF036772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S66 peptidase family protein"
                     /protein_id="HEX8932807.1"
                     /translation="MSVRYPVPLRPGDRIAVTSPSSGVRREMWPRLEFCTKHLRELGY
                     DVVIGDCMDGSGVTSAPAPARAAELTAMLLDPAIRAVVPPWGGELAIDLLPLLDFDAI
                     GAAEPTWLVGYSDLTTVMMPLTLRTGIATLHGSNLMDTPYAVPEPLLPWLSAATAPAG
                     STLRQGAARAYRSGRHDHYAFHPQVREMTLNTPGRWKLLGGQDGVAVEVCARGRLIGG
                     CLETVSMLPGSPYGDVADFAARHAPEGLLVYVEIAEAEAVVAARMLHHLRLAGWFDRA
                     NAVLVGRSAGPSSGDFSQHDALVDALGDLPMPVLYDLDLGHIPPQLAIVNGALATIEL
                     TPAAATLDQCLS"
     gene            1648..1878
                     /locus_tag="VF788_01150"
     CDS             1648..1878
                     /locus_tag="VF788_01150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932808.1"
                     /translation="MVRGASAVTAQALTFSRVAGFAQPALVNGDAGLVTRSQGTAGSR
                     HGLTIAHGKIVEINILADPARLSQLDVAVLSD"
     gene            2011..2394
                     /locus_tag="VF788_01155"
     CDS             2011..2394
                     /locus_tag="VF788_01155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932809.1"
                     /translation="MNVDQQSLDFEPSALPRAAGVGRSVNGGQAKTSRRGFDALHGPH
                     SCGGCGGVWMGDNTAHCSACHSTFATVGLFDAHRSIAGNCGTCRDPVTLIYRTGQRAG
                     ERVMHWREGLWQLPEMTSPEPVAAR"
BASE COUNT          432 a          884 c          898 g          487 t
ORIGIN      
        1 ctcgacgtac cggggcaggc ccgccgccac gacgagggcg ccggccatct ggacgaggac
       61 gaccagccgg tagacgacgt cgtcggtgtc gtaggccgag gcgaaccagg tgaagttcat
      121 ccacgcccac cagataccga agaagatcat gacgtagccc agcagtgcat gagccacgtg
      181 accctcggcg agcgcgtggt gcagctcggc cgctgctcgg gccaccgcca ccacgaacgt
      241 cagatcgaac agcagctcca gcggcgtgga cgcgcggtga cgctcgccgg gatcacggcc
      301 gctcattcgc cgtagccatg gttgaggctg tgagaccgtc tcgctcatcg tgatcacctg
      361 ccgcttcagt gacctgtgtt gatagccggt tccagaccca acgtctaccg cacatggtgc
      421 cgctgccagg cactcgtcac gatggtcggg tcttcccccc gctacacctg agtaacgacg
      481 ctctggcgtg ggagggcgtc gatcgagaga tttggcaggg tggtcggtgt gagcgtccgc
      541 taccccgtcc cgctgcggcc cggcgaccgc attgcggtca cctcgccttc ctctggcgtg
      601 cgcagggaga tgtggccccg gctggagttc tgcaccaagc acctgcgcga gctcggctat
      661 gacgtggtca tcggcgactg catggacggc tccggtgtca cgagcgcccc cgcgcctgct
      721 cgggccgccg agctcaccgc gatgctcctc gaccctgcga tccgcgccgt ggtgccgccc
      781 tggggcgggg aactggccat cgacctgctg ccgctgctcg atttcgacgc gatcggtgca
      841 gcggagccga cgtggctggt gggctattca gacctcacga cggtgatgat gcctctgacg
      901 ctgcgcaccg gcatcgcgac cctgcacggc agcaacctca tggacacccc ctacgcggtc
      961 cccgaaccgc tgctgccgtg gctctccgcg gccaccgcgc ccgccggaag cacgctgcgg
     1021 cagggcgcgg ccagggccta ccgcagcggc cggcacgacc actacgcatt tcacccgcag
     1081 gttcgggaga tgacgctcaa cacgccgggc cgctggaaac tgctcggcgg ccaagacggc
     1141 gtggcggtgg aggtctgcgc gaggggacgg ttgatcggcg gttgcctgga gacggtctcg
     1201 atgttgccgg gctcgcccta cggcgacgtc gcggacttcg ctgcccgaca cgcgccggag
     1261 ggtctgctcg tctacgtcga gatcgccgag gctgaggccg tggtggcagc gcggatgctg
     1321 caccatctac gcctggccgg ttggttcgac cgcgccaacg ccgtgctggt cggccgctcg
     1381 gccggcccgt cgtccggtga tttcagtcag catgatgcgc tcgtggacgc ccttggtgat
     1441 ctaccaatgc cggtgctcta cgacctcgat ctcggacaca tcccgccgca gctggcgatc
     1501 gtcaacggtg cgttggccac catcgagctc acaccggcgg ccgccaccct tgatcaatgc
     1561 ctcagctaag ccgaggtaac ccgtcgtagg ggtcttgtca cctcggctgg ggttggttcc
     1621 tcactgctat gacggatggc ctcgaaggtg gttcgcggcg cctcggctgt gaccgcgcag
     1681 gcgctcacgt tctcgcgggt tgctgggttc gcacaaccag cgctcgtgaa cggagatgcc
     1741 ggactcgtca cgcgctctca agggacggcc ggtagccgcc atgggctcac gatcgcccac
     1801 gggaagatcg tcgaaatcaa cattctcgcc gaccccgcac gcctgagcca gcttgatgtg
     1861 gcggtactca gcgactaaca ccgatgcggc gagcagcaac ccagaccgtg tgcggtgcgc
     1921 tcggccttag ggcctgcatc ggcgtgcctg acccgcgtgc tcggtctacc cgcggatagt
     1981 gctctgagat ttgtcagagg aggcgtcggg gtgaacgtgg accagcaatc cctggatttc
     2041 gagccgtcgg cgctaccccg ggctgccggt gtcgggagat ccgtcaacgg cggtcaggcg
     2101 aaaacgagtc gtcgtggttt cgatgcactg catggtccgc actcctgcgg agggtgcggt
     2161 ggcgtatgga tgggggacaa cacagcgcac tgctctgcat gccattcgac cttcgccacg
     2221 gtcggtctgt tcgacgccca tcgttcgatc gcggggaact gcgggacttg ccgtgacccc
     2281 gtgacgctga tctaccggac cggacaacgt gccggtgagc gggtcatgca ctggcgagag
     2341 ggcctgtggc agttgccgga gatgacctct cccgagccgg tcgcggcgcg ctgaacggcg
     2401 tcttgctggt tagcggcacg cctacgggat aactccgagc cgtatcaatg gcccagcaca
     2461 ggatagatcc ttcgtggaag aagtagctct actagggcaa tcacttcgtt ccaagtggtg
     2521 acaaagcgta attagagccg ggcgggatcc ctctccggag gttgccagta ctgtgcgtga
     2581 tcggctgggt tcgagggatt gtgtctcgct ggtgtggtat ccacagcagc ctccacagtc
     2641 tatccaccgc tgatgcacat ccttgactag ttgtacacat gatgtggacg cttggcgcgt
     2701 t
//
LOCUS       DASVXZ010000064         3703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1347984, whole genome shotgun sequence.
ACCESSION   DASVXZ010000064 DASVXZ010000000
VERSION     DASVXZ010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3703
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347984"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VF788_01160"
     CDS             <1..424
                     /locus_tag="VF788_01160"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8932810.1"
                     /translation="ILTTYHIDEAVYAALRAGASGFLLKDAAPAEIVNAIRSVVAGEA
                     WLDPAVARRLIDEFAARPEPHTPTPAEMAQLTPREREVLSLMARGLSNADVALELFIS
                     EATVKTHLARVMMKLGVREKAQAVAAAYQTGLVQPPTR"
     gene            complement(445..948)
                     /locus_tag="VF788_01165"
     CDS             complement(445..948)
                     /locus_tag="VF788_01165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932811.1"
                     /translation="MTDRELRVAIRQRFNALRIAVQQRRAELIAETEADLLDRFQAES
                     ERAEELNRGLKEITDEANRKTVALLREFEDLAAGGRWKGSRQAMFEVPRIFGVNVDRA
                     QRHRALLTDIENQTNQALRVLDRQQASLLRAPDRARTLMAKGAPAIVTGLIPPARLWD
                     VEPLAMA"
     gene            complement(1207..2262)
                     /locus_tag="VF788_01170"
     CDS             complement(1207..2262)
                     /locus_tag="VF788_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8932812.1"
                     /translation="MRVAVTGATGNLGTSVLAALRADPAIKEIVGVARRRPSAELDKV
                     RWVSADVASDDLSAAFAGVDAVIHLAWLIQPSRDPGVTWRANVVGSSRVFDAAASAGA
                     SAVVYSSSVGAYSPGPKDRRIDESWPTDGVPTCTYSREKAYVERILDTFAARHPQIRV
                     VRLRPGFVFKRAAASGIRRLFAGPFLPTPLLNPAFIPLVPQLPELLFQAVHSHDVGQA
                     FRLATVDRAASGAFNLAADPVLDSLQLATLLNARPVPLPARVLRALAALAWHARLVPT
                     EPGMVDLLLALPLMDTSRARDELGWQPQHSAGDALLELLTGMRENAGSATPPLERSRG
                     IAGRLAELRTGVGATDK"
     gene            2434..3351
                     /locus_tag="VF788_01175"
     CDS             2434..3351
                     /locus_tag="VF788_01175"
                     /inference="COORDINATES: protein motif:HMM:NF041045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX8932813.1"
                     /translation="MHQGLLYGSKQEFLAGTVPFIQDGLARGDPIWVMSTLRNAGWLR
                     AALGADARQVVFGDCSQWYRHPVRALAALNRAAPLGAGRQRLRMIGEPLWTACQGPES
                     TERARQESLLNLALASCNASVVCAYDTRVVDPRILAQVARTHPELVVDGGAQPSHDYT
                     DPAVFTAECDSSPLPEPPSSALRLAFEHLSQLATLRAFMTSYATWAGARVQCVAQFVQ
                     AVDEVATNAIEHGGGSGVVRVWTGAQTMSCEVSDTGPGMCDPLAGHLPLPQGRAGGCG
                     LWLARQFCDLVEVRSDPAGTTVRLHLTLD"
     gene            3424..>3703
                     /locus_tag="VF788_01180"
     CDS             3424..>3703
                     /locus_tag="VF788_01180"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX8932814.1"
                     /translation="MGSGGVLCSLGTKQVGGSVTHQALLYSSEEEFLAATVPLIQDGL
                     VHGDPIRIATTDRNSDWLRSALGTDAKRVEFCPSSECYRHPARALASTH"
BASE COUNT          645 a         1206 c         1207 g          645 t
ORIGIN      
        1 tattctcacc acttaccaca ttgatgaggc cgtttacgcc gcgctacgcg cgggcgcctc
       61 gggtttcctg ctcaaagatg ccgcacccgc cgagatcgtc aatgcgatcc gctcggtcgt
      121 cgccggcgaa gcctggttgg atcccgctgt cgctcgccgg ctcatcgacg aattcgccgc
      181 caggccggag ccgcatactc ccaccccagc ggagatggct cagctcacac cgcgcgagcg
      241 ggaggttctc tccctcatgg ctcgcggcct gtccaacgcc gatgtagccc tagagctgtt
      301 catcagcgag gccaccgtga aaacacatct tgcccgggta atgatgaagc tcggcgtgcg
      361 ggaaaaggcg caggcggtgg ctgccgccta tcagaccggg ctcgtgcaac cgccgacccg
      421 ataggccccc ggctgcactg gcgatcaggc catcgctagg ggctcgacgt cccatagccg
      481 cgccggcggg atgagaccgg tgacgatggc gggggctcct ttagccatca atgtccgggc
      541 ccggtccgga gctcgcagca aactcgcctg ctgccgatcg aggacccgca gcgcctgatt
      601 ggtctgattc tcgatatcgg tcagcagggc gcggtgtcgc tgggcacggt cgacattgac
      661 gccgaagatg cgcggtacct cgaacatcgc ctgacggctc cccttccagc gaccaccggc
      721 agcgagatcc tcgaactcac gcaacagggc aactgttttc cggttggcct cgtcggtgat
      781 ttccttgagg ccccggttga gctcctccgc acgctcgctc tcggcctgga accggtcaag
      841 taggtctgct tcagtttcag caatgagctc ggcacgacgc tgttgcaccg caatgcgcag
      901 cgcattgaat cgctgtcgga tcgcgacgcg gagttcacga tcggtcatgt ctcctccgtc
      961 cgcagcaggc ggtcgacgac cctcaacaat cccacgttgt gccgaagcca gccacctaat
     1021 cggttatttt cagggtggca cttttaactc actggcggac gaccttgagg tgactgtacg
     1081 gactcgagag atgtcagcac agcaaacctc cgatgaacgc gtcaacgtcg agagcgaata
     1141 ttcacgaaga gcatggaggc cagaacgacg agttacttcg cgcttatcgt gcagcgcgca
     1201 ctattgttac ttgtctgttg cgccgacgcc ggtgcgtagt tcggcgagcc gcccagctat
     1261 gccgcgggag cgttccagcg gcggtgtagc cgagccggcg ttctcacgca tgccggtgag
     1321 cagctcaaga agcgcatctc ccgccgagtg ctggggttgc cagcccagct catcgcgagc
     1381 gcgcgaggta tccatcagcg gtaatgccag gaggagatct accatgcctg gctcggtggg
     1441 aaccagccga gcgtgccacg ccagtgccgc gagcgcccgc agcactctag ctggtagcgg
     1501 cacggggcgg gcgttgagaa gcgtggcaag ttggagtgaa tccagcaccg gatcagccgc
     1561 caggttgaag gcgcctgatg ccgcacggtc gaccgtcgcg agccggaacg cctgaccgac
     1621 atcgtggctg tgcacggcct ggaacagcag ctccggcaac tggggtacca gcgggatgaa
     1681 cgcgggattc aacaacggag tcggcaggaa aggccccgcg aacaatcgcc gtataccact
     1741 ggctgcggca cgcttgaata cgaagccggg ccgcagccga accactcgaa tctgaggatg
     1801 gcgggcggca aaggtgtcga gaattcgctc gacataagcc ttctctcgcg aatatgtgca
     1861 ggtaggcacg ccatcagtcg gccacgactc gtcgatccgg cgatctttcg gcccaggcga
     1921 gtaggcaccg acagacgagg agtacaccac tgcgctggcg ccggccgacg cggcagcgtc
     1981 gaacactcgt gacgagccga ccacattcgc ccgccaggtc actcccgggt cgcgtgaggg
     2041 ttgaatcagc cacgcgaggt ggataaccgc atcgacgccg gcgaacgccg cactcaggtc
     2101 gtcggatgcg acatctgcgc tgacccagcg caccttgtcg agctcggcgc tcggccggcg
     2161 ccgggcgacg ccgacgatct ccttgatggc cgggtctgca cgcaacgccg ccagcaccga
     2221 ggtaccaaga ttgccggtag caccggtcac cgccactcgc atgtcgctca cccctgctgg
     2281 ctacccgccg cccggttctc caaacaccgc gcaacctccg gaggccacct ggtctgatac
     2341 gttttccggg cgatggctgg atcagaatgg ccaggtgtcc cagtcggcgg tgcggcaaac
     2401 gccgcaggct ccggccaggg tggcaggtgg ttggtgcatc agggattgct gtacgggtcg
     2461 aagcaggagt tcctggccgg caccgtcccg ttcattcagg atgggctggc gcgtggcgat
     2521 ccgatctggg tcatgtccac gctgcggaat gccggatggt tgcgggcggc gctaggtgcg
     2581 gatgcccggc aggtggtctt cggcgactgc agccagtggt atcggcatcc ggtgcgagca
     2641 ttggcggcgc tcaaccgcgc tgcgccgcta ggtgcgggca ggcagcggct gcggatgatc
     2701 ggggagccgt tatggacggc ctgtcaagga ccggagagca ccgaacgagc tcggcaggag
     2761 tcgctgctca acctcgcgct cgcgtcctgc aatgcctctg tcgtgtgtgc gtacgacact
     2821 cgggtagtgg acccccggat tctggcacag gtggcccgga cccatcccga gctcgtcgtg
     2881 gacggtggcg cgcagcctag ccacgattac accgaccctg cggtgttcac tgccgaatgc
     2941 gattcttccc ccctgcccga gcctccctcc tcagcccttc ggctggcgtt tgagcacctg
     3001 agccaactgg ccaccttgcg cgcgttcatg acctcttacg ccacctgggc cggcgcgcgc
     3061 gtacagtgcg tcgcgcaatt cgtacaggcg gtcgacgagg tggcgaccaa cgcgatcgaa
     3121 cacggcggcg gatcaggcgt ggtgcgagtc tggacgggcg cccagacgat gtcgtgcgaa
     3181 gtcagcgaca ccggccctgg aatgtgcgac cccttagccg ggcacctgcc ccttcctcag
     3241 ggccgggcgg gtggctgcgg gctgtggttg gcccgccagt tctgcgacct cgtcgaagtg
     3301 cgcagcgacc cggccggcac gaccgtgcgg ctgcatctca ctctcgactg accggccgta
     3361 gcgtcccacg tttggagagt cagaggcagg ggcatccgta ttcagtcaga taaggtcgta
     3421 agtttgggga gtggcggcgt gttgtgcagt ctcggtacca agcaggttgg cgggtcggtg
     3481 acccatcaag ccttgctgta ctcatccgaa gaggagttcc tcgcggctac cgtcccactc
     3541 atccaggatg gcctggtgca cggagacccc atccggattg ccaccactga ccgtaactcg
     3601 gattggctgc gctcggcgtt gggtaccgac gcgaagcggg tggagttctg cccgagcagc
     3661 gagtgctacc ggcacccggc gcgggcgctc gcctccacgc acc
//
LOCUS       DASVXZ010000065         2127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_813760, whole genome shotgun sequence.
ACCESSION   DASVXZ010000065 DASVXZ010000000
VERSION     DASVXZ010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813760"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..599
                     /locus_tag="VF788_01185"
     CDS             <1..599
                     /locus_tag="VF788_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX8932815.1"
                     /translation="FPLVMTDSVQEFLTAVGQETGVDFSGDDLDGAVAKLGALARLIG
                     ATLRDTANPTMLDAGYKANVIPSSAEAVVDCRVLPGRQAAFEREIDELLGPDITREWV
                     VNLPPVETTFDGDLVAAMEAAILYEDPGARTVPYMLFGGTDAKAFSKLGMRCFGFAPL
                     RLPPELDFGSLFHGVDERVPIDGLIFGTRVLDRFLRSC"
     gene            779..988
                     /locus_tag="VF788_01190"
     CDS             779..988
                     /locus_tag="VF788_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014144190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEX8932816.1"
                     /translation="MATGTVKWFNAEKGYGFITQDGGGPDVFAHFSAIQAQGYRTLEE
                     NQRVEFEITQGPKGPQADQIRALSA"
     gene            complement(1090..1308)
                     /locus_tag="VF788_01195"
     CDS             complement(1090..1308)
                     /locus_tag="VF788_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5703 family protein"
                     /protein_id="HEX8932817.1"
                     /translation="MIETVDGDGLDWEYQPLRLPREVSRRTAATQLAIQAEFAGWELS
                     RVRMYSDGTRTVLLRRQRTSVAQPKLSL"
     gene            complement(1309..>2127)
                     /locus_tag="VF788_01200"
     CDS             complement(1309..>2127)
                     /locus_tag="VF788_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932818.1"
                     /translation="TRTVAIALVNPPRLLLRALDDATSVRQVPLPGPAAGLALATGDG
                     TLLVPVSTPGCLIRVPLDGRPPSRTDLDGPVRGAVALGDVTVAALGDRLTVFEGNRPR
                     TTIRDFVDAAQLVSAGTPAGTKVWVLDRGRTAVSVVDLSTGETSPALRAGNGAANAVA
                     DRFSRILVTDARDGELLAFAGDPPMLRQRFPLAGAPYGLAYDGRRDLAWVTLTALDVV
                     VGLDVVGGEPVIVHRFPTVHQPDAVAVDPVSGRVLVVSASGAGLQIIDPGRVVQ"
BASE COUNT          362 a          710 c          694 g          361 t
ORIGIN      
        1 gcttcccgct cgtgatgacc gattcggtac aggagttctt gactgccgtc ggccaggaaa
       61 ccggagtcga cttctccggg gacgacctcg acggcgcggt ggccaagctg ggtgcgctgg
      121 cgcggctcat cggcgcgaca ctgcgcgaca cggccaaccc gacgatgctc gatgcgggct
      181 acaaggccaa cgtcataccc tcgtcggccg aggccgtggt ggactgcagg gtgcttcccg
      241 gccgccaggc ggccttcgaa cgtgagatag acgagctgct cggccctgac atcacccgtg
      301 agtgggtcgt gaacctgcct ccagtggaga cgaccttcga cggtgacctg gtggccgcca
      361 tggaggctgc gatattgtac gaagatcccg gcgcacgcac ggtgccctac atgctcttcg
      421 gcggcactga tgccaaagcg ttcagcaagc tgggcatgcg ctgcttcggg ttcgcgccat
      481 tacggctgcc tcccgaactc gatttcggct cgttgttcca tggcgtcgac gagcgggtac
      541 caatcgacgg gctgatcttt ggcacccgcg tcctcgaccg gttcctgcga agctgttgat
      601 tctgctaacg tctgcgcccg tagcagtgtt ggttccaagg acgcctgtgg agcaagcgcg
      661 ccacgggcgt tcgttgtgtc cggccagcgc ggtgcctgca cagcgctggc ggagctttac
      721 cgcgatccga ggcacccgca ttacgggccg catagggggc ccgagaagga gatggaagat
      781 ggcgaccggc acggtcaagt ggttcaacgc ggagaagggg tacggcttca tcacccagga
      841 tggtggcggc cccgacgtct tcgcccactt ctcggcgatc caggcgcaag gctaccgcac
      901 gctggaggag aaccagcggg tggaattcga gatcactcag ggacctaaag gtccgcaggc
      961 cgaccagatc cgcgcgctca gcgcctgagg tctgctcgcc ggggttggtc ccaaccaccc
     1021 gcgccgacca gactcacgag tagggtccgc accggcaggt gcgggcccta tgtcgctgtt
     1081 gagagacgct tacaacgaca gcttgggctg agcgaccgag gtgcgctgtc ggcgcagcaa
     1141 tacggtccgc gtgccatcgg agtacatccg tactctggag agctcccagc ccgcgaattc
     1201 ggcttggatc gctagctggg tcgctgcggt ccgccgggac acttcccgcg gcaaccgcag
     1261 cggctggtac tcccagtcga ggccgtcacc gtctactgtt tcgatcattt actgcaccac
     1321 ccgtccggga tcgattatct gcagtcctgc tccagacgca gagacgacca ggacccggcc
     1381 actgaccggg tcgacggcaa ccgcgtcggg ttgatgcacg gtgggaaacc ggtggacgat
     1441 cactggctcg cctcccacga cgtcgagccc taccaccaca tcgagcgcgg tcagcgtcac
     1501 ccatgccagg tcccgccggc cgtcgtaggc caacccgtat ggtgcgccag ccagcggaaa
     1561 acgttgccgc aacattggtg ggtcgccggc gaaggctaac aattcgccat ctcgggcgtc
     1621 ggtcaccagt atccggctga accgatcggc caccgcgttg gccgcgccgt tgcctgcgcg
     1681 cagggctgga ctggtctccc cggtggatag gtcgaccacg cttaccgcgg tgcgcccccg
     1741 atcgagcacc cagaccttgg ttccggccgg agttccggct gaaaccaatt gggcagcgtc
     1801 cacaaagtcc cggatcgttg tgcgcggtcg gtttccctcg aacacggtga gtcgatcgcc
     1861 caaggcggcc accgtgacat ctcctaacgc aaccgccccg cgcaccgggc cgtcgagatc
     1921 ggtcctgctt ggtggtctgc catcaagcgg aacccggatg aggcatcccg gcgtgctcac
     1981 cggcaccagc agcgtgccgt ccccggtggc aagcgcgagg ccagcggccg gtccgggcag
     2041 tggaacctgc cggaccgacg tggcgtcatc cagcgccctc agcagcagcc gcggcgggtt
     2101 gaccagcgct atagcaaccg tcctggt
//
LOCUS       DASVXZ010000066         3190 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1710148, whole genome shotgun sequence.
ACCESSION   DASVXZ010000066 DASVXZ010000000
VERSION     DASVXZ010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1710148"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1229..1525
                     /locus_tag="VF788_01205"
     CDS             1229..1525
                     /locus_tag="VF788_01205"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8932819.1"
                     /translation="MAESRRKFDQDFKEGAVRLVRETKRPIAQIAKDLGINAGTLANW
                     VALDRQGRDGAGRLSEDERIELARLRRENAELAMERDVLKRSVALWVKDATGRR"
     gene            1528..2442
                     /locus_tag="VF788_01210"
     CDS             1528..2442
                     /locus_tag="VF788_01210"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEX8932820.1"
                     /translation="MAAFIAAQRADYGVPCAVACRALGVSLAWFYKWRHGDGSPRRAR
                     RRALAALIAALFARHRGTYGAPRITADLRAMGWRVSQNTVAAIMAEQGLRARARRRRR
                     STTRPGKGRWHAPDLVNRDFTAQRVNQRWFGDGTEVDTAEGTLHLASVLDVCSRRILG
                     FALSEHHDAELAYGSLAMAVAVRGGDVGGVVLHTDRGSEYTAGAFRAACARLGIAQSM
                     GRVGSALDNSIIESWHSTLEFELRSLEQFPTKAAARQRVASWIDEYNRTRRHSSIGML
                     SPIDYELAHQADPDTQDPDTQDPDTEVA"
     gene            2779..2982
                     /locus_tag="VF788_01215"
     CDS             2779..2982
                     /locus_tag="VF788_01215"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8932821.1"
                     /translation="MQAGLPGVRLHDLRHTVVSLLLELGTPPHVVQAIARHADLDVTM
                     RIYAHTNLDTMREALDKIDWGAE"
BASE COUNT          596 a         1022 c         1034 g          538 t
ORIGIN      
        1 gcaacgctaa cggatctagg cgttgaaggc ttcgtcatct ttgatggcca catgctaaca
       61 ctgtcacaaa acgatcaccg taaccgggat gacacaccgc gcaatagaca aatcacccta
      121 acggattagt tatttcatta caacttctta gaccaggtgg tgcaggtggg gtccgatgag
      181 cttacccatc actatgcgga aagcgtcaat gactggaacc cctaccgcga ccatatcctg
      241 gcaatggcag acaccctctc agacggaatc accaagcaat tccccaacaa attcagctga
      301 tcgctgaccg cctctgcatc ggcgggacgg cgctacccgg actccagcca aagggtgcgt
      361 cggggaagcc ttgagacgac tggcgctcgt ctgcggtgaa gtctgcgctg cggtagctcg
      421 ggcgtacggc gtctggtgcg gttgcgacac atcggctact tcgccatacc gtggtgagcc
      481 tcctactcca gctcaaaaca ccgccacatg tcgtccagca gatcgaccga acacgccgac
      541 ctcgatgtcc accctgggca tctacgcgtg ctgacctggt caagccacct ttcgcacgtt
      601 gacgccctgt cgtggactgc gatgaccaag accgagacca cgtgtcaggt cacccctgtc
      661 caatgctggg accggtgccg tgcgtggggc taattaacgt gcggattgtc tgggtgcgtg
      721 cacggcgtgt ggtccccagg tggtccccag agcgttcctc gttccgaggt gcgattggcc
      781 tacgacggac gccgcggcag tgctggctgg acagcgggcg atgctgctcg tatcacgcag
      841 ctgatgcagt cccggctact cgacggaccg tcgtacggtg tcaacaagga tgtcgagagg
      901 gatcaaggtg agcaccgcac gcgatgaaca tcccccgtct gcgatgcctc gatgtcaccg
      961 acgcgacagg atacccactt cctcctacac catgatccac gttctgcctg ggagtcattg
     1021 agatcgttgt ggcgggctat tgctgccgcg accgcagtga tagcgctgta cttcaattgg
     1081 cgtagcacgc gggctggtgc gcgagccgcg aaggccgcgg aagatcagag ctagattcaa
     1141 aaacagattc gcatcgacgc cgcatagccg ttcgtctggg tgggcttccc ctcgtagcgt
     1201 ggagacatcg ccttaaaggg aggcggcgat ggctgagtca cgacggaagt ttgatcagga
     1261 ctttaaggag ggcgcggtcc ggttggtccg cgagactaag cgtccgatcg cgcagatcgc
     1321 gaaggacctg gggatcaacg cgggaacgtt ggccaactgg gtggcgctgg atcgtcaggg
     1381 cagggatggt gccgggcggc tgagtgagga cgagcgtatc gagctggccc ggctgcggcg
     1441 ggagaacgcc gagctggcca tggagcgtga tgtgctcaag cgctcggtgg ccctctgggt
     1501 caaggacgcg acgggtcggc ggtagccgtg gccgccttca tcgccgccca gagggctgac
     1561 tatggcgtgc cgtgcgcggt ggcgtgccga gcgttggggg tctcgctggc ttggttctac
     1621 aagtggcgcc atggtgatgg ctcgccccgg cgggcgcggc gacgggcctt ggctgcgctg
     1681 atcgcggcgt tgttcgctcg acatcggggc acctacgggg cgccgaggat caccgcggat
     1741 cttcgggcga tgggctggcg ggtcagccag aacaccgttg cggcgatcat ggccgagcag
     1801 ggtctgagag cgcgggcacg tcggcgccgg cggagcacga cccgtccggg taagggccgc
     1861 tggcacgccc cggacctggt caatcgagat ttcaccgcgc agcgggtgaa ccagcgttgg
     1921 ttcggtgatg gcaccgaagt cgacactgcc gagggcacac tgcatctggc cagcgtcctg
     1981 gacgtgtgct cccgacgcat ccttgggttc gccctgagcg agcatcacga cgccgagctg
     2041 gcctacggct cgttggcgat ggcagtcgcg gtccgcggtg gggacgtcgg cggggtggtg
     2101 ctgcacaccg accgcggcag cgagtacacc gccggggcct tccgtgcggc ctgtgcccga
     2161 ttgggcatcg cccaatccat gggccgagtg ggatcggcgc tggacaactc gatcatcgag
     2221 tcctggcact ccaccctgga gttcgagctg cgctcactcg agcagttccc gaccaaagca
     2281 gccgcccgtc agcgcgtcgc gtcctggatc gatgagtaca accgcacccg tcggcactcc
     2341 tcgatcggga tgctctcacc gatcgactac gagctggccc accaggccga ccccgacacc
     2401 caggatcccg acacccagga tcccgacacc gaggtggcct gaccgagatg ctcaccacag
     2461 gcacaacgac aacggaggcg gctgcgccgc cgctgaggcc ccgtgcgcgc cgcgcaggat
     2521 acgggggccg cacctccagc ctcaagggtc gctcacgcga tcgctaccgc gacggcctac
     2581 ggccgccctt gaccccggag acctcgacgc cccccaaccg gcgcacagcg cgggcaggcc
     2641 cagcgcctgc cccactcacg cgcgacgcac aagacccaaa cgaaccacaa gatcaccata
     2701 accgagtctc tacggtttca ggggattgcc gcgtccagat tcctacgcca cgctataaag
     2761 tcggcaaggg ccgtccggat gcaggctgga ctgccagggg tgcggcttca tgatctgagg
     2821 cacaccgtcg tgagtctcct gctggaactc ggcaccccgc cgcacgtggt ccaggcgatc
     2881 gcccggcacg ccgacctgga cgtgacgatg cggatctacg cgcataccaa cctcgacacc
     2941 atgcgcgagg ccctcgacaa gatcgattgg ggtgccgagt gagacgccgt tgctacacga
     3001 ctgctacatc gagcagcaag agcagccaac cgagcaacgg cgtccaccag gcatcatgcc
     3061 tggttagagg tggcggaagc ggagggattc gaacccccgg tgccttgcgg cacgctcgcc
     3121 ttcaaggtct gcgaccgata gttcagcacc gatcatccag ggtgttccgg caggtcaacc
     3181 ggccgtagcg
//
LOCUS       DASVXZ010000067         1848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1531093, whole genome shotgun sequence.
ACCESSION   DASVXZ010000067 DASVXZ010000000
VERSION     DASVXZ010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1531093"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /gene="trpD"
                     /locus_tag="VF788_01220"
     CDS             complement(<1..858)
                     /gene="trpD"
                     /locus_tag="VF788_01220"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEX8932822.1"
                     /translation="MVAPTRSRSWPTLLAQLIAGTDLDTQDTTWAMDQVMSGAATPAQ
                     VAAFAVALRVKGETPAEITGLAAGLLSHACRVHLPQRAVDVVGTGGDQAHTVNISTMA
                     ALVAAAAGAPVVKHGNRAASSQCGAADVLEALGVAIDLGPAQVAQCVAEVGIGFCFAP
                     LFHPALRHAAGVRREIGVPTAFNFLGPLTNPAQPAAALVGCADIRMAPVIAQVLADRG
                     VSALVVRGDDGLDEVTTTTTTSVWVVEGGVVRRDLLDPVVLGVPVGRREDLRGGDAAA
                     NADAVRRLLA"
     gene            complement(869..1285)
                     /locus_tag="VF788_01225"
     CDS             complement(869..1285)
                     /locus_tag="VF788_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932823.1"
                     /translation="MNVPSDATTVLVFSHRPEVRETIINAVGRRPAADVGRLQYVEAG
                     TIAEVLTEVDAGRVGLAILDGEAQPTGGMGLSRQLKNEIAQCPPVIVSVKRRDDRWLA
                     VWSQADAVIVHPLDPLASAETVAEVLRSHRPRTANR"
     gene            1551..>1848
                     /locus_tag="VF788_01230"
     CDS             1551..>1848
                     /locus_tag="VF788_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome B"
                     /protein_id="HEX8932824.1"
                     /translation="MLSVTSSSLAGPSISQRVHSLNRPNMVSVGTIVWLSSELMFFAG
                     LFAMFFTVKAQHDGPWPPILAATGEPIILNKPYALVVTIILVSSSFTCQWGVFKA"
BASE COUNT          314 a          630 c          572 g          332 t
ORIGIN      
        1 ggcgagcagc cgtcgcaccg catcagcatt ggccgcggcg tcaccaccac gtagatcctc
       61 ccgccgaccc actggcacgc ccagtaccac cgggtccaac aggtcacgcc gcaccactcc
      121 gccctcaacg acccatactg aggtagtggt cgtggtggtc acctcgtcga gcccatcgtc
      181 gccacggacg accagtgcac tgacgccacg gtcggcgagc acctgggcga tcactggcgc
      241 cattcggata tctgcacagc ccaccaatgc agctgcgggt tgcgccgggt tagtcaaagg
      301 cccgaggaag ttgaacgccg tggggacgcc gatctctcga cgcactccag ctgcgtgccg
      361 cagtgcgggg tgaaacaggg gtgcaaagca aaatccgatt cctacctcgg cgacgcactg
      421 cgccacctgc gccgggccga ggtcgatcgc gactccgagt gcttcgagca catccgcggc
      481 accgcactgc gaggaggctg cacggttgcc gtgcttcact actggtgcac cagcagcagc
      541 cgccaccagg gcggccattg ttgagatgtt gacggtgtgc gcttggtcac ccccggtgcc
      601 gacgacgtcg actgctcgct ggggtaggtg cacccggcac gcatgggaaa gcaggcctgc
      661 ggccagaccg gtgatctccg caggcgtttc acccttgact cgcagtgcca ccgcgaatgc
      721 ggccacctgc gcgggcgtag ccgcgcctga catcacctga tccatcgccc aggtcgtgtc
      781 ctgagtatcc agatctgtac cggcgatcag ctgagcgagc agcgttggcc agctgcgaga
      841 acgggtcggc gccaccatcc ggggggcctc agcggtttgc tgttcggggc cgatgtgagc
      901 gcagcacctc agcaacggtc tcggcggagg cgagcggatc aagcggatgc acgatcaccg
      961 cgtcggcctg cgaccacacc gccaaccagc gatcgtccct gcgtttcacc gacacgatca
     1021 ccggcggaca ctgcgcgatc tcgttcttga gctgtctaga caggcccatc cctccggtgg
     1081 gctgtgcctc gccgtcgaga atggccaggc ccacacgacc cgcgtcgacc tcggtcagca
     1141 cctcggcgat cgtgcccgcc tcgacatact gcaagcgacc aacgtccgca gcaggacgcc
     1201 gcccgactgc gttgatgatg gtctcgcgca cctctggccg gtggctgaat accagtactg
     1261 tggttgcgtc gcttgggacg ttcatccggt gtccgaggcc ctcgctgttc taggtgcggt
     1321 gccaatcgct gtctctagtc gccatgtccg ggttccccgc ctacaaggcg cgaggccagc
     1381 atgatggtag tacggacgat aaccccccgg tgtgaggcgg cgtggcattg acggggcgtg
     1441 ttatcctcct gcccgcgccc aacagggcga gcgatcgcca tgattgaatc gtcaatcgtg
     1501 gcggcatctg gtcggccccg gtacagccgt cgtatgcacc tttcgtcata atgcttagcg
     1561 tgacctcgtc gagcctggca gggccctcca tcagtcagcg ggtgcactcg ctgaacagac
     1621 ccaacatggt cagcgtcggc accatcgtct ggttgtccag cgagctgatg ttcttcgctg
     1681 gcctgttcgc gatgttcttc acggtgaagg cgcagcatga cgggccgtgg ccaccgatcc
     1741 tcgccgccac cggggaaccg atcattctca acaagcccta cgcgctggtg gtcaccatca
     1801 tcctggtgtc ctcatccttc acttgccagt ggggcgtgtt caaggctg
//
LOCUS       DASVXZ010000068         2563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1079275, whole genome shotgun sequence.
ACCESSION   DASVXZ010000068 DASVXZ010000000
VERSION     DASVXZ010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1079275"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..799
                     /locus_tag="VF788_01235"
     CDS             <1..799
                     /locus_tag="VF788_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932825.1"
                     /translation="VAAVSAAGLAALWRYYRRPGGHYWVLFPAAVVLTTGWVWVLVSR
                     DVSWNGWLRYATLAVGAAAAVLLVAGRVSAAGTNFALSRVVGALGVAAVLLAPGVWSA
                     ATALTPSGGAMAQAGPQGHSRGMVSARSPGAMARELTANQATILAYAQAHSGSSRIVL
                     AVEGGARAAEPYLIHSDATIIGMGGFSGQDPAPTVATLAEWVQQRQLRYVLLGSPDEG
                     GRYRDVPAPPRAASRGGVSAQRTQWVRQHCTALNVGGTQDLYDCQPS"
     gene            1203..>2563
                     /locus_tag="VF788_01240"
     CDS             1203..>2563
                     /locus_tag="VF788_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8932826.1"
                     /translation="MDEGETGMRSLRELVKWLIRPVELADVNGMGVDGIGQAAPAVSA
                     RDIFTRFWPDARPFRFWLVLGLSLVMVAPLLDTATIWLFKLLIDDVLAVRNFSAFGPI
                     AVTYLAIAVLLGVVEFADGYLTAWIGENFLHRLRTRVFAHLQTLSVDFFDRRPLGDIL
                     SRLTGDVSAIENLMLAGITETIAQAVKIVLFAGVLLYLSWQLALASLVAVPVGWFVAR
                     FFSQRIKAASREVRQRSGSISTVAEESLGNATLIQVYGRQQAEITRFTDQSMSSVTAE
                     LAATRLRAVFSPLTDLLEVAGVLVVIGMGVWELTSDRITLGGLLVFLVYLSQLYSPVR
                     GLGQLSNTVYAAAASAERIIDLLDAQPEVCAPTHPLRLRRPRGELAVDRVSFRYPDTV
                     ANALSEVSFTVPPGCSLALVGASGAGKTTLTKLLLRLHDPATGTIRLDGIDVRDLDPE
                     QLRA"
BASE COUNT          414 a          810 c          858 g          481 t
ORIGIN      
        1 cgtcgcggca gtgagcgccg ccggtctggc cgcgctgtgg cgttactacc gccgccccgg
       61 tgggcactac tgggtgctgt tcccggctgc tgtcgtgctg acgactggct gggtctgggt
      121 gctggtatcc cgggacgtct cctggaacgg ctggctgcgt tacgccactc tggccgtcgg
      181 tgccgctgcg gcggtgctcc tcgtcgccgg gcgagtctcc gcggcgggta ccaacttcgc
      241 gctgtcccgg gtggtcgggg cgctgggtgt ggccgcggtg ctgctcgccc cgggcgtgtg
      301 gtcggccgcc accgcgctca cccccagcgg cggcgcgatg gcccaagcgg gtccgcaggg
      361 acactctcga ggcatggtgt ccgcgcgctc ccctggcgcg atggccaggg aacttaccgc
      421 caaccaggcc acgatcctgg cctacgccca agctcactcc ggtagctcac gaattgtgct
      481 ggcggtggag ggcggcgcga gggccgcgga gccatacctg atccacagcg acgccacgat
      541 catcgggatg ggcgggttca gcggccagga cccagccccc accgtcgcca ctctcgccga
      601 gtgggtacaa cagcgtcagc tccggtacgt cttgctcggt agtcccgacg aggggggccg
      661 ctaccgggat gtccccgcgc cgcctcgcgc ggcgagccgc ggcggagtgt ccgcgcagcg
      721 gacccagtgg gtgcggcagc actgcaccgc gctcaacgtc ggcggaaccc aggatctcta
      781 tgattgccag cccagctgac tattccactg ttcggtgata aaaacggctc gggcggtcga
      841 tgaaggacac tcgccgaaat tcggccacgg tttttactag gtgaactttg atattgctga
      901 ctgcgctcat gaatagctga aagcttgctg tgaataacgc gcaccggagc aatcggtggg
      961 gtagtgtaga aagcgagaag aaaaacgcag aagggcgttt ttctccaaag ggaaggaaga
     1021 gtaaagagat gagcgtacaa ccttggaact ggcgtcatga caaggacgac aaacgccgcg
     1081 ggcgcggtgc ggacgaccgt cggcccgaca acgacgacca gcgtaggaga tgccgcaggt
     1141 agcggtgagc cattgatggt ggggcttccc cttcgcgggc gcgcgaagga ggagccccac
     1201 caatggatga gggggagact gggatgcgat cacttcgtga gttggtgaag tggctgatca
     1261 gaccggtaga actggctgac gttaatggca tgggggttga tggaatcggg caggccgctc
     1321 ccgcggtcag tgcgcgggat atcttcaccc ggttctggcc tgacgcccgc ccgttccggt
     1381 tttggttggt actcggtctg tccctggtca tggtggcgcc gctgctcgat accgccacga
     1441 tctggttatt caaactgctg atcgatgacg tgctggcggt tcgcaacttc tcggcgttcg
     1501 gaccgattgc ggtcacgtac ctcgcaatcg ctgtgctcct cggagtcgtc gagttcgccg
     1561 atggctacct gaccgcgtgg attggtgaga atttcctgca ccggctacgg acccgggtgt
     1621 tcgctcatct acagaccttg tcggtggatt tcttcgaccg gcgccccctg ggtgatattc
     1681 tgagccggct caccggggat gtgagcgcaa ttgagaatct gatgctcgcc gggatcacag
     1741 aaacaatcgc gcaggccgtc aagatcgttt tattcgctgg ggtcttgttg tacctgagct
     1801 ggcagctggc actcgcgtcc ttggtggcgg tgccggtggg ctggttcgtc gcccgcttct
     1861 tctcgcagcg gatcaaagcc gcgtcccggg aagtccgcca gcgcagcggc tcgatcagca
     1921 cggttgccga ggagagcctg ggcaacgcca ccctgatcca ggtctatggc cggcaacagg
     1981 ctgagatcac ccgattcacc gatcagagca tgagcagcgt caccgccgag ctcgctgcca
     2041 cccgcctgcg tgcggtgttc tcgccactga ccgacctact cgaagtggcg ggggtcctgg
     2101 tcgtcatcgg gatgggggta tgggagctga ccagcgaccg catcacgctg ggcgggctgc
     2161 tggtcttcct ggtctatctc tcccagctct acagtccggt ccgcggcctc ggtcagctct
     2221 ccaacacggt ctacgcggcc gccgccagcg ccgaacgcat catcgacctg ctcgatgccc
     2281 agcccgaggt ttgcgctccc acccacccgc tccggttgcg tcgccctcgt ggagagcttg
     2341 cggttgatcg ggtgagcttc cgctaccccg ataccgttgc caacgcgctg agcgaagtca
     2401 gcttcaccgt gcccccaggg tgcagcctcg cgctggtagg ggccagcggc gccggcaaga
     2461 ccacgctgac aaagctgctg cttcgactgc acgatccggc tactggaacg atccgcctgg
     2521 acgggatcga cgtccgagac ctcgacccgg agcagctccg cgc
//
LOCUS       DASVXZ010000069         3887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_541579, whole genome shotgun sequence.
ACCESSION   DASVXZ010000069 DASVXZ010000000
VERSION     DASVXZ010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_541579"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VF788_01245"
     CDS             <1..705
                     /locus_tag="VF788_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX8932827.1"
                     /translation="SQAFFPGLSNHDGGMADFLLTSARACVKLDPSTQPADVAALADA
                     GITAYHAVRKAIPLLYPGTTCVVIGAGGLGHIGIQCLAALTATTIIVVDRNPDALKLA
                     EELGAQHTVVADGQHVDAVKDLTGGAGAEVVLDFVAEQGAEHDGFALTRRAGSYFVIG
                     YGGQIQIPTLDIISTERNIIGNIVGTYNDLAELMVLAQAGKVTLHTKVYPLDSALEAL
                     DDLDNGRVRGRAILVP"
     gene            733..2424
                     /gene="groL"
                     /locus_tag="VF788_01250"
     CDS             733..2424
                     /gene="groL"
                     /locus_tag="VF788_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020636926.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEX8932828.1"
                     /translation="MAKELRFGAEARGLLLAGVDQLAEAVKSTLGPKGRNVILEKITG
                     SPVVTNDGVTIAREIHLKNQFENMGAQLVKEAAIKTNDIVGDGTTTATVLAQSIVREG
                     MKAIDSGGNPVLVKRGIDLAVARLVEHLQSVAHPVSTEHDYARVAAISANDDDTVGEV
                     IAKALHTVGDGGIVTVTESAVHGMSVDFVEGFEWDNGYVSPYMVTNPASLEAIINDPY
                     ILLCSEKITKVQQLMPLLDKVMRNPRPLVIVAENVEGTALSMLVHNHVNGIFQCVAVR
                     APGFGDRRLRKLEDIATMTGGEVYSKHSGFTLETMTANQLGRASQVRVNADRTAIVGG
                     AGSADAVEFRLAQMRAERERATYGVDEDVLNERIGALSGKVAVISVGAPTNAELAELQ
                     HRVEDALSATRAAMAEGIVAGGGAALVHAGQVLDDLEVKDDYAMGVDIVRRSLTEPAF
                     LIASNAGHSGQEVVSRIAELGVDEGFDALEGRFGNMIEMGIIDPLRVARAALQNGASV
                     AGLLLTTNSLVAEEQTPWGGSAALMTEFGSLDEGLRQPSPDSSTPQSLGLGPSIG"
     gene            2512..3795
                     /locus_tag="VF788_01255"
     CDS             2512..3795
                     /locus_tag="VF788_01255"
                     /inference="COORDINATES: protein motif:HMM:NF001923.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEX8932829.1"
                     /translation="MLQRGASHQAAGNHPVTTTIDHRSVRSPWVRKALPLLGPAFVAS
                     IAYVDPGNFATNVVGGAQYGYLLLWVVLTANVMAILIQYLSAKVGIATGQNLPELCRE
                     HFSLPVSRLLWLQAELVCMATDLAEFVGAALALHLLFGLPPLQAGLLTAVLSFAILAL
                     QPRSFRWFEAVIIALFAVILGAFLYQTLAVGFDASDVAHGLVPRLTDANSVLFATGIV
                     GATVMPHVIYLHSALTPSRVPRHADENRRRLVLAMQRYDIVMAMGLAGLTNAAMLIVA
                     AAAFHGDANPVASLPAAHAGLYTTVGAGTALAFALALLASGIASSSVGTYAGQVVMQG
                     FIQRTIPLFLRRLLTMAPALVVLGLGLDASYALVLSQVMLSFGIPFALIPLLIITARE
                     NVMGSFVNRKLTSAVGGIVALLIIGLNCVLLTLAL"
BASE COUNT          663 a         1255 c         1289 g          680 t
ORIGIN      
        1 agtcaggcct tttttcctgg cctgagcaac cacgacggcg ggatggccga cttcctgctg
       61 acctcggcgc gggcctgtgt gaagctcgac ccgtcgaccc agccggcgga tgttgcggcg
      121 ctggccgacg cagggatcac cgcctaccac gcggtgcgca aggcgatccc gctgctctat
      181 cccggcacga cctgtgtcgt gatcggcgcg ggcggcctcg ggcatatcgg catccagtgc
      241 ctcgccgcat tgaccgcgac caccatcatc gtggtcgacc ggaacccgga tgcgctcaag
      301 ctcgctgaag aactgggcgc ccagcacacc gtggtcgccg acgggcagca cgtggacgcg
      361 gtgaaggacc tcaccggcgg ggcgggcgct gaagtggtgc tcgacttcgt cgccgagcag
      421 ggcgccgagc acgacggctt cgcgctgacc cgccgggccg gctcctactt cgtgatcggc
      481 tacggcggcc agatccagat ccccaccctc gacatcatct ccaccgagcg caacatcatc
      541 ggcaacatcg ttggcaccta caacgacctc gccgagctga tggttctcgc ccaggccggc
      601 aaggtcacgc tgcacaccaa ggtctacccg ctcgattcgg ccctggaggc gctcgacgac
      661 ctcgacaacg gccgggtccg cggccgagcg atcctcgtcc cgtagttctc acaccacatt
      721 gagggagatc ggatggccaa ggaactacgt ttcggtgcgg aagcccgtgg cctgctgctg
      781 gccggggtcg accaactggc ggaggcagtc aagtcgacgc tcggacccaa ggggcgcaac
      841 gtcatcctgg agaagatcac cggatcgccg gtggtcacca acgacggtgt gacgatcgcg
      901 cgtgagatcc acctcaagaa tcagttcgag aacatgggcg cccagctggt caaggaagcg
      961 gcgatcaaga ccaacgacat cgtcggcgac ggcacgacga ccgcgacggt gctcgcgcag
     1021 tcgatcgtcc gcgagggcat gaaagcgatt gactcaggcg gcaacccggt gctggtcaag
     1081 cgcgggatcg acctcgccgt ggcgcggctg gtcgagcact tgcaaagcgt cgcccacccg
     1141 gtgagcaccg aacacgacta cgcccgggta gccgcgattt cggccaacga cgacgacacg
     1201 gtcggagagg tgatcgcgaa ggcgctgcac acggtcggcg acggcggcat cgtcacggtg
     1261 accgagtccg cggtgcacgg tatgagcgtc gacttcgtcg agggcttcga gtgggacaac
     1321 gggtacgtct cgccgtacat ggtgaccaac ccggccagcc tggaagcgat catcaacgac
     1381 ccgtacatcc tgctgtgcag cgagaagatc acgaaggtcc agcagctcat gccgctgctc
     1441 gacaaagtga tgcggaatcc gcggccgctg gtgattgtcg cggagaacgt cgagggcacg
     1501 gcgctgagca tgctggtgca caatcacgtg aacggcatct tccagtgcgt ggcggtccgg
     1561 gcgcccggtt tcggcgaccg caggctacgc aagctggagg acatcgccac gatgaccggc
     1621 ggcgaggtgt acagcaagca ctccggtttc accctggaga ccatgacggc caaccagctg
     1681 ggccgggcgt ctcaggtgcg ggtgaacgcc gaccgcactg cgatcgttgg tggggcaggc
     1741 tctgcggatg ccgtcgagtt ccgactcgcg cagatgcggg ccgaacgcga acgtgcaact
     1801 tacggcgtcg atgaggacgt gctcaacgag cggatcgggg cgctgtccgg gaaggtcgcg
     1861 gtgatcagcg tgggcgcccc gacgaacgcg gagctcgccg agctgcagca ccgggtagag
     1921 gacgcgctgt ccgcgacgcg cgccgcgatg gccgagggca tcgtggccgg tggaggcgct
     1981 gcactggtgc acgccggcca ggtgctggac gatctggagg tgaaggacga ctacgcgatg
     2041 ggagtcgaca tcgtccgccg ctcgctgacc gagccggcct ttctgatcgc cagcaacgcc
     2101 ggccactcgg gccaggaggt ggtcagcagg atcgccgagc tcggggtcga cgagggattc
     2161 gacgcccttg agggccgctt cggcaatatg atcgagatgg gcatcatcga tccgctgcgg
     2221 gtggcgcggg cagctctgca gaacggtgcg tccgtggccg ggctgctgct taccaccaac
     2281 tccctggtcg ctgaggagca gaccccgtgg ggcggcagtg ccgcgctgat gacggagttc
     2341 gggtcgctgg acgagggact gcggcaaccg tctcccgact cgagcactcc gcagtcgttg
     2401 ggcctgggcc cgtcgatcgg ctgacgtcga gtccgcgctc tgcggggtgg tcggcgaacg
     2461 gcgggaagat cagggctggg tgtgggtacg cgtcgacgag gtgtgattgg tgtgctgcaa
     2521 cggggcgcgt cacatcaagc agcgggcaat catcctgtca ccaccacgat cgaccatcgc
     2581 tcagtgcggt caccttgggt ccgcaaggcg cttccgctgc tcggccctgc gttcgtcgcg
     2641 tcgattgcct acgtcgatcc ggggaacttc gccacgaacg tggtcggcgg tgcgcagtat
     2701 ggctacctgc tgctgtgggt ggtcctcacc gccaacgtga tggcgatact gatccagtac
     2761 ctctcggcaa aggtcggcat cgcgaccggg caaaacttgc ccgagctgtg ccgggaacat
     2821 ttttcccttc cagtctcccg gctgctatgg ctgcaagccg agctggtgtg catggccacc
     2881 gacctggccg aattcgtggg cgccgcactc gctttgcacc tgctcttcgg ccttcccccg
     2941 ttacaggccg ggttgctaac cgcggtgcta tccttcgcta tcctcgcttt gcaaccgcgc
     3001 agcttccggt ggttcgaggc cgtaatcatc gccctattcg cggtgatcct cggagccttt
     3061 ctctatcaga cgctcgccgt cgggttcgac gccagtgacg tcgcgcacgg cctggtgccc
     3121 cgactcaccg acgctaacag cgtattgttc gcaaccggca ttgtcggggc gacagtgatg
     3181 ccacacgtga tttacttgca ctccgcacta accccgagtc gagtccctcg acatgctgat
     3241 gagaatcggc ggcgcctagt cctggcgatg cagcggtacg acatcgttat ggccatgggg
     3301 ctggccgggc ttaccaacgc ggccatgctc attgtcgcgg ccgcggcatt ccacggtgat
     3361 gctaatccgg tcgcttctct cccggccgcg cacgccggac tctacacgac ggtaggagct
     3421 ggcacggcgc tagctttcgc gctggcgctg ctcgcctcag ggatcgcatc atccagcgtc
     3481 ggcacctatg ccggacaggt tgtcatgcag ggcttcatcc agcggacgat ccccctgttc
     3541 ctgcgccggc tcctcacgat ggctccggcg cttgtcgtgc taggactggg actggacgcg
     3601 agttacgcac tcgtgctgag ccaggtaatg ctgtccttcg gcataccgtt cgcgctcatt
     3661 ccgttactga tcatcaccgc gcgagaaaat gtgatgggct cattcgtgaa ccggaaactc
     3721 accagcgccg tgggcggaat cgttgcatta ctgatcattg gactgaattg cgtcctcctg
     3781 accctcgcac tgtagctccc gtgtgtgtcg tcgtacgtgc ccgcaccgca cctccgctgg
     3841 cggcgaccac gagaccgacg gcgaggattt gcaggaggct gagtgac
//
LOCUS       DASVXZ010000070         2004 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_635013, whole genome shotgun sequence.
ACCESSION   DASVXZ010000070 DASVXZ010000000
VERSION     DASVXZ010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_635013"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            248..505
                     /locus_tag="VF788_01260"
     CDS             248..505
                     /locus_tag="VF788_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932830.1"
                     /translation="MFWSLAYSSLPCIFQFLVLALRGDRSTQIKVLVLHHQVAVLRRQ
                     VHRPDLQHADRALLAALSRLLRRSSWGAFLERPAIEMTACR"
     gene            573..1430
                     /locus_tag="VF788_01265"
     CDS             573..1430
                     /locus_tag="VF788_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012890904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEX8932831.1"
                     /translation="MPLLPASLIEPLWVEFAALIGSAERPEFSPTHPWGCHRRRIPDR
                     VVFDHVIAALVHGTGYERLASPGCSDRTIRRRLTEWAQAGIGQELLRIGLDAYDRMIG
                     LDLTDLAVDGSITKSPCGGEVSGRSPVDRGKQGTKRSVACDGDGIPLHLVAARANDHD
                     SPLLEPTLAGICDMIGPLPDQPCMHLDRGYDSIKTRDLLNLLGYDADIAIKGTPAPIQ
                     AGKRWPVERTHSWMNGYGKLRRFTDKRKIIVEFYLYLAATLTVTRRLINRARTLYRWP
                     TRPSTRRLR"
BASE COUNT          354 a          713 c          578 g          359 t
ORIGIN      
        1 gacccgccac tcaatcgtgg acttctgaat aatgctcata actgaggaac aactccgggc
       61 agcctatgtc gattttttcg agtttgcaca tgtatttcat gtcgagcaac ttggagaaga
      121 actgcaccag aatattggac cggatctttg ggcagctgaa gcctgttggg tgcaaataac
      181 ctgtcatagg tgctgaaccg ggggtttgtg tctggcggat cagctggtgc tggcatgatc
      241 gcccaccgtg ttctggtcgc ttgcctacag ctcgctgcca tgcatcttcc agttcctggt
      301 tctggcgcta cgtggtgacc gctccacgca gatcaaagtc ctcgtgctgc accaccaggt
      361 cgcggtgctc cgccgccaag tccacagacc ggatctccaa cacgccgatc gagccctact
      421 cgcggctttg tctcggctgc tgcgccgctc ctcgtggggc gccttcttag agcgtccggc
      481 aattgagatg actgcgtgtc gttgaaggta gaggcacgga cctgcaagtg atcatgggat
      541 tgctgaagtc ctgatgatcg cctggagagt ccgtgcctct gctaccagca tccctgatcg
      601 agccactgtg ggtcgagttc gccgcgctga tcgggtcggc cgagcgtccc gagttctccc
      661 cgacccatcc ctggggctgc caccgtcgcc ggatcccgga tcgggtcgtg ttcgaccatg
      721 tgatcgccgc actggtgcac ggcaccggct atgaacgcct cgccagtccg ggctgctcag
      781 atcgcaccat ccgccgtcgc ttgaccgagt gggcccaagc cggcatcggc caagaactgc
      841 tgcgcatcgg actcgacgcc tacgaccgga tgatcggcct ggaccttacc gatctcgccg
      901 tcgacgggtc gatcaccaaa tcaccctgcg gtggtgaggt atccggccgc agccccgttg
      961 accggggcaa acaaggcacc aaacgctccg tggcctgcga cggtgacggg atcccgctac
     1021 acctggtcgc cgcccgcgcc aacgatcacg actcgcccct tctcgaaccg accttggccg
     1081 gaatctgcga catgatcgga ccgctgcctg accagccgtg catgcacctc gaccgcggct
     1141 acgactccat caagacccgg gacctgctca acctcctggg ctacgacgcc gacatcgcga
     1201 tcaagggcac gcccgccccg atccaagccg gcaagcgctg gcctgtggag cgcacccact
     1261 cctggatgaa cggctacggc aaactccgcc ggttcaccga caaacgcaag atcatcgtcg
     1321 agttctacct ctacctcgcc gccaccctca ccgtgacccg ccgcctgatc aaccgagccc
     1381 gcaccctcta ccgctggccc actcgaccca gcacccgccg tctccgctga cgatcattcg
     1441 ccggacgctc taaatcgccg ccggttcccc cgcccacccc gaagacccct gatcctgact
     1501 ccgggtgctg ggggcgcccc ggaaagccag cggcggcggc gctccgcagt gtgacatggg
     1561 ggaccacgtc gatcgcgtat taccgtggcg atccggctcc aggaccctgc gtagtcgagc
     1621 aaccgccgtg caccatcgct accgtgccgc tgcacatgcc agccggtgaa cgcctctgcc
     1681 atcggatccg tgtccaggtc gtggtacagc gatcccgccg tctcgacccg ctccgggcgg
     1741 gcatcctccg ccgtatcacc tactagcgct cgcgcatccc caccggtgcg gacagcacca
     1801 ggaaagtggc tgcggcagct gcgcgtccag cagggattga gcaaaccgag cggccggcgc
     1861 gcgggcatga ctcagcctac ggtggagcgg ttcgaggccg gtggcgtgat gtatacgctg
     1921 ctcgtccctc ggcgaccggc ccaccacgca agccctaccc accacgcaag atcgcagcag
     1981 tgccctggga tgagctcccg acga
//
LOCUS       DASVXZ010000071         4876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_7932, whole genome shotgun sequence.
ACCESSION   DASVXZ010000071 DASVXZ010000000
VERSION     DASVXZ010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7932"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..79)
                     /locus_tag="VF788_01270"
     CDS             complement(<1..79)
                     /locus_tag="VF788_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003416884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8932832.1"
                     /translation="MDWRHHAACRDEDPELFFPVGTSGPA"
     gene            648..1031
                     /locus_tag="VF788_01275"
     CDS             648..1031
                     /locus_tag="VF788_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932833.1"
                     /translation="MSAEAAVPAAVRAAGLLVLLQGLVGIAIAGVLVLSAVRGSTGPV
                     PVGATAAWLAGFGAILVTVGLNLVRGRHGARTPATVAQLLLLGVCWYAAGPSSQPVYG
                     IPAGAFCVTVLVLLFCPPALRWAHH"
     gene            complement(1070..1897)
                     /locus_tag="VF788_01280"
     CDS             complement(1070..1897)
                     /locus_tag="VF788_01280"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HEX8932834.1"
                     /translation="MRVSTEGPGRRTIGYTVDAVEHFVGLLAGRGPGPDLDVGALAIA
                     AGADPELDPSTWLRELDRLAQGIDSLEILIHRLFVEENFAGNTADYYDPRNSLLDQVL
                     HRRLGIPITLSIVCLEVGRRAGISLEGISMPGHFLVRPMATNHYLDAFSGGALLDLAS
                     CEALFRTANQAGPEVPFGRHLLTAAPRRAIFARILQNLRAVYRDLGRPTDLEWVLRMR
                     LALPGVVAQDLVELGHTLGRLGRFLDGARFLDSQIDKWPQHAELLEYAARSLRAQLN"
     gene            complement(1990..2214)
                     /locus_tag="VF788_01285"
     CDS             complement(1990..2214)
                     /locus_tag="VF788_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932835.1"
                     /translation="MFGRVGIKATVAGTGALAVTLLAICVPASAAADTRAAQSTVKNV
                     ATGFCLDSNANRQVYTLGCNGGSYQQWTGV"
     gene            3372..3725
                     /locus_tag="VF788_01290"
     CDS             3372..3725
                     /locus_tag="VF788_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932836.1"
                     /translation="MPVAIETSRGLLVAALRATGRAIYASWLRTITVLARAAQDTIWR
                     RTKAGPLALSTSRSGRGPSDPAAEVRVFGSGVDDIDHADQTPKPRAHLRGRVARRAGI
                     PARWEPSGGVCRSRG"
     gene            complement(3682..4212)
                     /locus_tag="VF788_01295"
     CDS             complement(3682..4212)
                     /locus_tag="VF788_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932837.1"
                     /translation="MVSCGLVPGIARSMTYQVHPRDLVTTLFPSSPEFARKPAVLATG
                     ILVALCEWPAMDALREVISEDEDSLGIGVWLCHQAPVRAGTTLTITARCASVTGRVSR
                     WDVRADDHRHTVAHGWAEFAVVRTAEFLQRHWLAPATDPPVPHVSDPPGQHRAQANPE
                     RVITHGSGRPRRMAPI"
BASE COUNT          847 a         1569 c         1568 g          892 t
ORIGIN      
        1 gagcggggcc gctggttccc acagggaaga acagctcggg gtcctcgtct cggcaggccg
       61 cgtgatggcg ccagtccatg gttcttgctc ctcgtcgatc gcgctggtga actccatgtc
      121 ccagcgccgt cgtcgcctgt catttgggct tgtgaatgat ttcacaatca tccgcgatgt
      181 caaggggtat ctacggacgc agtgagccaa ttcacccggc gggtacccgt cgtacgaact
      241 gacaaccctt gtgaaaccga ttttccaagc acaattcgga cctaactgtg cgtcacgagc
      301 acttgcctca cggctgttcg ctccgcacgc taaccgcgac acgatcaccg cggtgagcta
      361 cccaggaaga tcgccgaccc ggaggtcata gggcttctcg gcagctggtc ctgctcgaca
      421 taacgagcct ccccgcccaa acgtttcggc caaatttttg ctgtacgaag cgtggtcggg
      481 ccgtcacaga cgaggactcc ggacagtcgc tcaactcgtg ccccgcggaa ctttgtgatc
      541 agctcgccgg ccctcgagcc ggagagcgcg agctcgccac gtgatccacg ggacagacac
      601 taatctggcg tggtgaccgc cgacgtactc cctcccgtgg agatcgcgtg agcgccgagg
      661 ccgccgtgcc agctgcggtc cgggccgctg gcctgctagt gctgctgcag ggcttggtgg
      721 gtatcgcaat cgcaggcgtg ctggtcctca gcgcggtgcg cggatccacg gggccggtac
      781 ccgtcggggc caccgcggcc tggctcgcgg gcttcggggc catcctggtt accgtggggt
      841 tgaatctggt ccggggtcgg cacggcgctc gcactccggc tactgtcgcg caactcctat
      901 tgctcggcgt gtgctggtat gccgccggac cgtcgtccca gccggtctat ggaatccccg
      961 ctggagcctt ctgcgtgact gtactagtgc tgttgttctg ccccccagcc ttgcgctggg
     1021 cccaccacta agcccacggc agagattgag cacacatgtc gcgacgtgct cagttgagct
     1081 gagcccggag actgcgcgcg gcgtattcga ggagttcggc atgttgcggc cacttgtcaa
     1141 tctgtgaatc caggaatctg gcgccgtcga ggaagcgacc tagccggcca agtgtatgac
     1201 caagctcgac gagatcctgg gcgaccaccc cgggcagcgc cagacgcatc cgcaataccc
     1261 attccaggtc cgtgggacgc cccaggtctc ggtagacggc ccgcaggttc tgcagaatgc
     1321 gggcgaaaat cgcccttctg ggtgctgcgg tgaggaggtg ccgcccgaat ggcacctccg
     1381 gacctgcctg gttagcggta cggaacagtg cctcacaact ggcgaggtcg agcagcgcgc
     1441 cgccgctgaa tgcgtcgagg tagtggttgg tggccatcgg acggacgagg aagtggccag
     1501 gcatgctgat tccctcgagt gatatcccgg cccggcgccc cacctcgagg cagacgattg
     1561 acaacgtaat tgggatgccg agcctgcggt ggagcacctg atccagcagg gaattgcgcg
     1621 gatcgtagta atccgcggtg ttcccggcaa agttctcttc gacgaaaagc cggtggatga
     1681 gtatctcaag cgagtcaatg ccctgtgcca ggcgatccag ttcccgtagc caggtgctgg
     1741 gatcgagttc tggatccgcg cccgcggcga ttgcgagcgc gcccacgtca agatccggcc
     1801 caggcccgcg cccggccagc aatcccacga agtgctcgac tgcgtccacg gtgtagccga
     1861 tcgtgcgcct tccagggcct tctgtcgaca cccgcaccgg ttgtctgacc ccaccttcgc
     1921 gcaccggggc ccggagcgag ttacctcccg gcccagagca cccagctggc cacgaggcag
     1981 cgggtttgct cagacaccgg tccactgctg gtagctgccg ccgttgcagc cgagggtgta
     2041 gacctgcctg ttggcgttgg agtccaggca aaacccggtc gcgacgttct tgaccgtaga
     2101 ttgagcagcg cgagtatcgg cggctgccga ggctggcaca cagatggcca gcagggtcac
     2161 agcaagggcg ccagtgcccg ccacggttgc tttgattccg acgcgaccga acattctttg
     2221 gctactcctc gtagttgtgt gacccttccg gtcacggcgg atgggaacct tacagctcga
     2281 ttgatcgagt ctgcgggcac ccacctgccg acctgtcacc cggcgatgga ggaagcccct
     2341 ccgggctgct cagcacgctt cgacacctag cgggccgtcg gtacccggcc caattgccga
     2401 gctgctcgag ccgaactgtg ccagcgccta gcagctcgac gccatcgagg ctgcctcggc
     2461 aacgggccgt tcgggggcgc gtcacaccca aagaggtcgc tggttcgatt gagcatctcg
     2521 cagcataaaa acgcagaaga ccttcagccc ctctctgccg cccgcttcag tttattgagt
     2581 agtagatcgg caactgctga tggccggctt aggacgggga gtgggatgtg tcgaggcgct
     2641 gggcgcggtg cgcccgccgt gccatccgct cctgaacggc ggccgggatt gcggagtcct
     2701 tttcgccgcc gcgatggcgg ggagtagggc cagtcccagc cccgtgtcag ctgacaacag
     2761 cggcgacggc aacgtagaaa acaacccagc accagcagta cagtgcgaag ccgggtcgcg
     2821 gtgcaggttg aaggcagagt cgtgtgaaac atctcggcag taggtatgat cactcgcatc
     2881 tggtagaccc aggttgttga cggtagcggt gggccatgtc cgtttcaccg tcacgtatgt
     2941 gctggcacat cttctggcaa gggtggtgcc gaatagggtg agagggaacc ctgatgctgc
     3001 cggtcggtca cgcatacgtg tcgccttacg ccacgtcgga taacgagacg cacttcgaat
     3061 ggtgcaagtt caactcgacc tggtggagga atttgcgatt cctgcgcagc cgctctgcat
     3121 cggcggcacg cttccgagtg gcagagcacc tttgctcgca tttcctcaat ggggtgaatc
     3181 agatcttcca cggggaatct ggacccgacg cccgtccgtc agatcgccac ggcccagtga
     3241 acgtcaccac aatggggctc tggtcgacca ggacggcaca ctgatcgcga agcggtggat
     3301 cgggagtccg tcgaggattt cgccgagtta ctcacgctgc tcgccgaggc ggtgacagcg
     3361 ccgaggaact gatgccggtc gcgatcgaaa cctcacgggg gctgctggtc gccgcgctgc
     3421 gagccaccgg ccgtgcgatc tatgcgagct ggctccgcac gatcacggtg ctggcccgcg
     3481 ccgcccaaga caccatctgg cggcgcacca aggcaggccc cctcgctttg agcacctccc
     3541 ggagtggtcg aggaccatcc gaccccgccg cggaggtccg cgtcttcggg tcgggtgtcg
     3601 atgacattga tcacgccgat cagactccca agccacgagc ccatctgcgc ggtcgtgttg
     3661 cccgtcgtgc cgggattcct gctagatggg agccatccgg cggggtctgc cgctcccgtg
     3721 ggtgatcacc cgctccgggt tggcttgggc gcggtgctga cccggggggt cgctcacgtg
     3781 cgggacagga ggatcggtgg ctggtgcgag ccagtgtcgc tggagaaact ctgccgtcct
     3841 taccaccgcg aactccgccc atccgtgcgc cacggtgtgc ctatggtcgt cggcgcggac
     3901 atcccagcgg ctgacccggc cggtgacgct ggcgcagcgt gcggtgatcg tcagcgttgt
     3961 cccggcgcgc accggtgctt gatgacacag ccagaccccg atgcccaggc tgtcctcatc
     4021 ctcactgatg acttcacgca gtgcatccat cgcgggccac tcgcagagcg ccaccaagat
     4081 accggtggcc agcaccgcgg gtttgcgcgc gaactccggc gagctaggga acagagtggt
     4141 gaccaggtcg cgggggtgga cctggtaggt catgctccgc gcgataccgg gtaccagacc
     4201 gcagctcacc acgtcgtgcc atcaggagcg cgacagacgc cgtcgtgacc ctccagcaaa
     4261 tcgcagtgcc attcgtcgtc ctcagccaag ccgttggggt aggtgagagc accacggcac
     4321 cgtgcagcgc gcggcaggag cgggtcaggg aaccgtgggg cgcttggggt gtatgtgagt
     4381 gttgtcatgg ttgcgcagag taacaaatat gttgctttac gtcacattca tgcggttgcg
     4441 acatgcacaa caacgtcaag cgaaagctcc gcggagccca gtgcccagca aacaaccggc
     4501 atccccttcg ccgggctgat accgccggga tgtcgcctta agccggagtc agtgctggta
     4561 ggggctgaac tgcctcagct gtcggcgggt gcgccctggc cgcactgagg tccttgacca
     4621 cggacaccta ctcgccgact gtctcgatcg ggtgatttgc tgtcatcgcc ggcttcactc
     4681 gacgccctgg ctctcttctc caagatgagt tgagaggtat acggccatga acggtcaatc
     4741 gccaggttgg gcttcccagc cgtgggaaga gcccgatcag aacgatattt cccgcccctc
     4801 gctgctacgc cacccgctag cctggcgccg cgccaggctc catgaacgcc tacaccggct
     4861 caccgaccaa cggctc
//
LOCUS       DASVXZ010000072         6822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_8179, whole genome shotgun sequence.
ACCESSION   DASVXZ010000072 DASVXZ010000000
VERSION     DASVXZ010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6822
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8179"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2119
                     /locus_tag="VF788_01300"
     CDS             <1..2119
                     /locus_tag="VF788_01300"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEX8932838.1"
                     /translation="FLITGLLWQELATTGTVRLARFYGARARRLLPAGITVLAVAVVA
                     SAWWLPPLRARSGLVDALASAVYVGSYRFALRGTDYLAADGSASPFQHYWSLGVEEQF
                     YLLWPALLIGAVWIARHAHTLPGRGGTHRRVAPGPPVTPVLLAMLGVALVSLMVSLHW
                     TYTAGPWAFFSLPSRAWELAIGGLIALSAPLWRQLPSVLAALAGWAGLVLIVLACVRL
                     GSSTAYPGVAALLPVLGTALVIAGGCALPHHGVDLALSQRPLRQLGRYSYSWYLWHWP
                     VLVFAPVVTGHAPGLGLRAVAVALSAGLAVLTTHIVEDPIRFATCLRHCPARSLLVGG
                     ATTAIGLAATLLAFLAVPIPVGSGAPAHAPRLSTAAASPTPSAQSDRRITPHLDVLPS
                     PLQELTAQVQAIVAASTDTEAVPSNLTPSLADAAVDKALPFRDGCLLTWIAIRQGSCA
                     YGDTTSATTVALIGDSHATQWFPTLEHIAQQRQWRLEAFTKTTCPPLVDLPIHSPYLG
                     REYTECEQWRTRILERIQVERPALVILGMSRRYAQDFHFTTYGPQWLTGLTRTVAQIH
                     ATGATVLVLGPIPDPLTSVPTCLSAHLDAASACAPDRTSALNATGITAEQAATAAGGG
                     YYADLTSLFCTPSRCPVIAANNLVFRDDNHLTTSYAHWLAPVISAHIDNATAANPTHT
                     PLDDHKIQGTPAKPQLRSSPAGN"
     gene            complement(2560..2997)
                     /locus_tag="VF788_01305"
     CDS             complement(2560..2997)
                     /locus_tag="VF788_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HEX8932839.1"
                     /translation="MTASVELPPKLSELVDEFSEVGVKDRLQLLLELSQELPALPERY
                     AGHRDTMEQVHECQTPLFLAVEVDPERAVHLFFDAPLEAPTTRGFASIMYTGLDGESA
                     DTVLGVPNDFYLALGLGEAVSPLRLRGMAAMLARIKNQVRSAR"
     gene            complement(3023..3916)
                     /locus_tag="VF788_01310"
     CDS             complement(3023..3916)
                     /locus_tag="VF788_01310"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX8932840.1"
                     /translation="MPVPNDTDPKSSAYAHPERLVTTQWLAEHLGEPGLVVVESDEDV
                     LLYDTGHIPGSVKVDWHTELNDPVTRDYVNGQRFAEICGERGISRDSTVVFYGDRNNW
                     WATYALWVFSLFGHPDVRILDGGRAKWVAEGREMTTDQSKPERAEYPVIERDDSTIRA
                     FKDQVRAHLGKPLVDVRSPGEYTGELLHMPDYPQEGAVRGGHIPGAASVPWARAAAED
                     GTFKSREDLEDIYQREQGLSPDDDVIAYCRIGERSSHTWFVLTHLLGFPQVRNYDGSW
                     TEWGNSVRVPIAVGTERGSVS"
     gene            complement(4096..5361)
                     /locus_tag="VF788_01315"
     CDS             complement(4096..5361)
                     /locus_tag="VF788_01315"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEX8932841.1"
                     /translation="MGHQASKVQSPAHLTVLVQSDPAPRYREPGLGYRRITGELAGMG
                     RQIGASAVWMILKRAGIDPSPRRSGPTWGEFLRAQASGILACDFFHCDTVLLTRLYCF
                     VVMEHATRRVHVLGVTAHPTGDWLTQQARNLLMDLGERVEQFKFVIRDRDSKFTSMFD
                     AVFASEGIQIIKTPIQAPRANAIMERWIGSLRREVLDRMLLVNARHLLRVPAEYETHF
                     NTHRPLGHAAPLRALPPAEHHRDQDHTTRSARRDDPRIYAGRVASSNFGTHRTTVSVF
                     RPDPYAILGVATDATHSQVTTAYRRAVRACHPDGAHPDREQLATVIAAYHLLRDPDRR
                     AAHDGHHQATRTMHQASTIPVRVHRTTPEQQPYLRAGPVRCLLPIAVLPGHAAMAPAA
                     PQPSPLAVTARCASAQPAPSGVTARRRAG"
     gene            complement(5808..6398)
                     /locus_tag="VF788_01320"
     CDS             complement(5808..6398)
                     /locus_tag="VF788_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX8932842.1"
                     /translation="MFPETPAAAAALSVATRFYSPALLNHSVRSYLWGAMYGTAHGIA
                     FDDELFYVSALLHDIGLTEAFDSHRLPFEEAGGRLAWVFGVAAGWPTQRATRVAEIIV
                     LHMRDDVSPAADPESHLLQIATSWEVVGRRPEEFPPDARTEMLARYPRLGFGAEFLAC
                     FEDQARRKPGSAAAASVGRDVAARIAANPLEGHPPA"
BASE COUNT         1114 a         2309 c         2212 g         1187 t
ORIGIN      
        1 gtttttgatc accgggcttc tgtggcagga gctggcgacc acgggcacgg tgcggctggc
       61 ccggttctac ggtgcccggg cccggcggtt actcccggcg gggatcaccg tgttggcggt
      121 cgctgtcgtc gcctcggcgt ggtggttgcc gccgctgcgc gcgcgtagcg gcctggttga
      181 tgccctggcc agcgcggtgt atgtgggcag ttaccggttc gcgctgcggg ggacggacta
      241 tttagccgca gacgggtctg cttccccgtt tcagcattac tggtcgctgg gtgtggaaga
      301 gcagttctac ctgctgtggc cggcgctgct gatcggggct gtctggattg cccggcacgc
      361 gcacaccttg cccggccgcg gtgggaccca tcgacgggtc gcgcctggac cacccgtgac
      421 accggtgctg ctggcgatgc tcggcgtggc gctggtgtcg ctgatggtct cgctgcattg
      481 gacctacacc gcagggccgt gggcattttt ctcgttgccc tcgcgagcgt gggaattggc
      541 aatcgggggc ctgatcgcgc tcagtgcgcc gctatggcgc cagctaccgt cggtgctggc
      601 tgcgctggcc gggtgggcag gtctggtgct gatcgtgctg gcgtgcgtgc gcctcggctc
      661 gtctactgcc tatcccggtg ttgcggcact gctgccggtg ctgggcacgg cgctggtcat
      721 cgccggtgga tgtgccctgc cccatcacgg cgtcgatctc gcgttgagcc aacggccgct
      781 gcgccagctg ggccgctatt cctactcctg gtatctgtgg cattggccgg tgctggtgtt
      841 cgcccccgtg gtgaccgggc acgccccggg cttagggctc agggcggtcg ctgttgccct
      901 gagtgcgggc ctggcagtgc tgaccaccca catcgtcgaa gacccgatcc gcttcgccac
      961 ctgcttgcgc cactgcccgg cgcgcagcct gctggtgggt ggtgcgacga ccgcgatagg
     1021 cctggccgca acgctgctgg ctttcctggc tgtcccgatt cccgtgggct ccggcgctcc
     1081 ggctcacgca ccccgactga gcaccgctgc cgcatctccg accccgtccg cacagtcaga
     1141 ccggcggatc actccccacc ttgacgtgct gccctcgcct ctccaggagc tcaccgcgca
     1201 ggtgcaggcc atcgtcgcag cctcgaccga caccgaggca gtcccgtcca acctgacccc
     1261 gtcactggct gacgccgcag ttgacaaggc ccttcccttc cgggacggct gcctgctgac
     1321 ctggatagcc atccggcagg gcagctgcgc ctacggcgac acgacctccg ccaccacagt
     1381 cgccctcatc ggtgattcac acgccaccca gtggtttccc accctggaac acatcgccca
     1441 gcaacggcaa tggcggttag aggcgttcac caagacgacc tgcccgccgc tggtggacct
     1501 gcccatccat agcccctacc tgggccgcga gtacaccgag tgcgagcagt ggcgcacccg
     1561 tatcctcgag cgaatccagg tcgagcggcc cgccctggtg atcttgggta tgtcccgccg
     1621 ctacgcccag gattttcact tcaccaccta cggcccacag tggctgaccg gcctgacccg
     1681 gacagtggcc caaatccacg ccaccggcgc taccgtgttg gtgctcggcc ccattcccga
     1741 tcccctcacc agcgtcccca cctgcctctc ggcccaccta gacgccgcca gcgcctgcgc
     1801 ccccgaccgc accagcgccc tcaacgccac gggcatcacc gccgaacagg cagcaaccgc
     1861 agccggtggc ggctactacg ccgacctgac ctccctgttt tgcaccccca gccgctgccc
     1921 ggtcatcgct gcaaacaacc tcgtcttccg cgacgacaat cacctgacca ccagctacgc
     1981 ccactggctg gccccggtca tctccgcaca catcgataac gctacggccg ccaaccccac
     2041 ccacaccccc ttagatgatc acaagatcca aggaacaccc gcaaaaccac agctacggtc
     2101 atcaccagcc ggcaactaat cgccggccgg aaactagcgg tacctccacc gagcatccgg
     2161 gccgaaaaag gagcccgacc agcggccggg ccccgtgtga tgtctcatcg cggccactac
     2221 gagcttggca ccgacgtcga tccgcggcac cggatcccgc gtgtcttcac cgaactcgtc
     2281 cttgctattt gagctgagca ccgcagcgtc ctatcctgcc caccacgcga caacgcaact
     2341 gcgccaagac gatggactgc gcgcggccct accgcaggta tcaccggacc gccagcacga
     2401 tcacctccgc cggaaccgga accctgcaaa accggacttg ggccccggca ttcgaacttg
     2461 acaacggcgc atcggcctac ctgcccgagc tcgccatcga tcaacgcgtc aaaccgtagc
     2521 gggaggggcc cggccggcaa ccgggcgaac cgggcgaggt cagcgggcag agcgaacctg
     2581 gttcttgatc cgggccagca tggccgccat accgcgcaac cgcagcgggc tgaccgcctc
     2641 acccaacccg agggccaggt agaagtcgtt cggcacgcct agcacggtat ctgcgctctc
     2701 cccgtccagc ccggtgtaca tgatcgaggc gaacccccgg gtggtcggcg cctctagggg
     2761 agcgtcgaag aacaggtgca ccgcccgctc agggtccacc tcgaccgcca ggaacagcgg
     2821 tgtctggcac tcgtgcacct gctccatcgt gtcgcggtgg ccggcgtagc gctccggcag
     2881 cgcgggcagc tcctgggaca gctcgagcag tagctgcagc cggtccttga cgccgacctc
     2941 ggagaactcg tcaacgagct ccgacagctt cgggggcagt tcgaccgagg cggtcacgat
     3001 ggcctcactc ccagcgacat cgtcagctga ccgagccgcg ctcggtaccc accgcgatgg
     3061 gtacccgtac cgagttgccc cactcggtcc agctgccgtc gtagttgcgt acctggggga
     3121 acccgagcag atgggtcaag acgaaccagg tgtggctgga ccgctcgccg atccggcagt
     3181 aggcgatcac gtcatcatcc ggggatagcc cctgctcgcg ctggtagatg tcctccagat
     3241 cctcccggga cttgaaggtg ccgtcctcgg cagccgcccg ggcccacggc acgctggccg
     3301 cgcccgggat gtgcccgcca cgcaccgcgc cctcctgtgg gtaatccggc atgtgcagca
     3361 gctcgccggt gtactcgccg ggtgagcgca cgtccaccag cggcttgccc aggtgcgccc
     3421 gcacctggtc cttgaacgcc cggatggtgc tgtcgtcgcg ctcaatgacc gggtactccg
     3481 cccgctccgg tttggactgg tcggtggtca tctcccggcc ctcggcgacc cacttggccc
     3541 ggccgccgtc caggatgcgc acgtccggat gcccgaacag gctaaacacc cacagcgcat
     3601 aggtggccca ccagttgttc cggtcgccgt agaagaccac cgtgctgtcc cgggagatac
     3661 cccgctcgcc gcagatctcg gcgaaccgct gcccgttcac gtagtcgcgg gtcaccgggt
     3721 cgttcagctc ggtgtgccag tcgaccttga ccgagccggg gatgtggccg gtgtcgtaga
     3781 gcagcacgtc ctcgtcggac tcgaccacca caagcccggg ttcacccaga tgctcggcca
     3841 gccactgggt ggtgaccagg cgctccgggt gggcgtaggc ggacgatttc gggtctgtgt
     3901 cgttcggtac cggcatgaca ccgagcctag tccgtttcca cagatcagtg accatgacgc
     3961 ccacctcggt gagcagccgg cgaaccagcg gcaggctgat ccccatcacg ttcgacggcc
     4021 tccctcgatg ccggtgatga actatccgcc gggaagctgg taatgatcgc cgcgtcgggg
     4081 tgttgggcga atgcctcacc cagcgcgcct tcgtgccgtc actccgctcg gtgctggctg
     4141 agctgacgcg catcgggccg tgactgcaag cggactgggt tggggtgctg ccggtgccat
     4201 cgcggcgtgc cccggcagga cggcgatcgg cagcaggcag cggacagggc cggcgcgtag
     4261 atagggctgc tgttcggggg tggtgcggtg gacgcgaacg gggatggtgc tggcctggtg
     4321 cattgtccgg gtcgcctgat ggtgcccgtc gtgggcagcg cggcggtctg ggtcgcgcag
     4381 gaggtggtag gcagcaatga cggtggccag ctgttcgcgg tcaggatggg cgccgtcagg
     4441 gtgacaggcg cgcacagcac gccggtaagc cgtggtgact tgggagtgag tggcgtcggt
     4501 ggccacgccc aggattgcgt agggatcggg ccggaatacg ctcaccgtgg tcctgtgggt
     4561 gccaaaattc gatgaggcta cgcgacctgc gtatattcgt gggtcatccc gccgagccga
     4621 tcgcgtcgtg tgatcttgat ctcggtggtg ttcagctggg gggagtgctc gtagcggagc
     4681 agcgtgaccg agtggtcggt gggtgttgaa gtgggtttcg tactcggctg gtacacgcag
     4741 caggtgtcgg gcgttgacga ggagcatccg gtccaggact tcccggcgta ggctacctat
     4801 ccagcgttcc atgatcgcat tcgcacgagg tgcctggatc ggcgtcttga tgatctgaat
     4861 accctcgctg gcgaagactg cgtcgaacat gctggtgaac ttcgagtccc ggtcccggat
     4921 cacgaacttg aactgttcca cccgctcacc aaggtccatc agcagattcc gcgcctgttg
     4981 ggtaagccag tctccggtcg gatgggcggt gacgccgagg acgtgcaccc ggcgggtcgc
     5041 gtgctccata acgacgaagc agtacaacct agtaagcagc acggtgtcac aatgaaagaa
     5101 gtcacatgcc aagatcccac tggcttgagc gcgcaggaac tcaccccagg tggggccgga
     5161 gcggcgaggg gacgggtcaa tcccggcgcg tttgaggatc atccagactg cggaggcgcc
     5221 aatctgacgg cccatgccag cgagttctcc ggtgatgcgg cggtagccca gcccgggttc
     5281 tcggtagcga ggcgcaggat cactttgcac aaggacggtg aggtgggcgg gtgactggac
     5341 cttcgacgct tggtggccca tcgtcgtgtg atcaggtcgc catgccagcg caggagcatg
     5401 cccggggtaa cgaacagatt ccgacgaggg gcccggggaa gcagtcgaac cagcgcgctg
     5461 atcaggtaca cgagtcgtaa cgtcacagac gccgatcatg ccgaaccgaa gcggacccgc
     5521 attacaccag gtcaacaccg tggccgagta tccggcaccc ccaggctgcc ctgctctagc
     5581 cggtgtgtcg tccttctcgc cgaacgcaac gaactgcatt cacgcttcgt gagaccgcga
     5641 aacttatccg cacagcccag gtgatgaagt aaagaacaaa ggcgagcagg aatacgaact
     5701 tggtgactgt tcgcccgccc gcaacagtgg ccgtcgggat cccgaacagg atgccacaac
     5761 taagactgag tctcatttgg ggcgtttgag gagttcgcgg ccgggggtca ggcgggtggg
     5821 tggccttcga gggggttggc ggcgatccgg gcggcgacgt ctctgccgac cgatgcggcg
     5881 gcggcactgc ccggcttgcg tctcgcctgg tcctcgaagc acgctaagaa ttccgcgccg
     5941 aatcccagtc ggggatagcg ggcgagcatc tcggtcctcg cgtccggcgg gaactcctcc
     6001 ggtcgccgtc cgaccacctc ccagcttgtg gcgatctgca gcaggtggga ctcgggatcg
     6061 gcggccgggg acacgtcgtc gcgcatgtgc agcacgatga tctccgcgac cctggtggcc
     6121 cgctgcgtcg gccagccggc tgccacgccg aagacccagg ccagacgccc tcccgcctcc
     6181 tcgaacggca gcctgtggct gtcgaatgcc tccgtcagcc cgatgtcgtg gagcaacgcc
     6241 gagacgtaga acagctcgtc gtcgaaggcg atcccgtggg ctgtgccgta catcgctccc
     6301 cagaggtagg agcggacgga gtggttgagc agcgcgggcg agtagaaacg ggtggccacg
     6361 gacagcgcgg ccgcagcagc gggagtctcc ggaaacatgt gctcagcttt catatgaccg
     6421 tgctgcttcg acgtccgtcc ctgggcatat gccaccggtg agacggctgt gacttggcaa
     6481 gattttaagc gttacgaaag agactcgccg tattgtgcgc tccacgcccg accgctcaat
     6541 ggtcacatgc ccaccttgcc cagtccggac agcatcaccc acggcacgac gccgggaccg
     6601 gtattatagt cgttgatcgc tgaaatcagc gaagctgcca tgctttgtga gcttgctcag
     6661 gaccgcagct gagaaccgtc aatataccgc cctcatctgc cgcgatgggc gcgacctgtg
     6721 agcctgaatc gtggatcttg tacctgtggg ttcgggtgat cagtttcatg cacacccagt
     6781 accggcgctt gctgccagcc gtgggtagcc tggtcgtcgc cc
//
LOCUS       DASVXZ010000073         5855 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_635577, whole genome shotgun sequence.
ACCESSION   DASVXZ010000073 DASVXZ010000000
VERSION     DASVXZ010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5855
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_635577"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /locus_tag="VF788_01325"
     CDS             complement(<1..800)
                     /locus_tag="VF788_01325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932843.1"
                     /translation="MAAIPNAGGARYAPRGVVRALLRVVLLGGLVVVGWLLGSGISYA
                     DEDLGQPSPGLIHVANAVPFDDGSDDGFGTPAAVEPIVKKVLSTAATPRLPVQPPAQV
                     SILRPIVKAVGIAKPLDQALPVSRPLSGPAQHSAPARQMATMPPSTKADRSATVSPAV
                     LTVAAQGAASAPASAPAVHAKPAMVYSPAQLAAEPMTLRPALGDGPVSPMPGNPLGST
                     ASLCTIGGAGGGAGSKNGPDVAVHDSWLTDGLTQPYGLLERDTSGLPRS"
     gene            complement(935..2104)
                     /locus_tag="VF788_01330"
     CDS             complement(935..2104)
                     /locus_tag="VF788_01330"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEX8932844.1"
                     /translation="MRTHGLVPRLQPFTSTIFAEMTALAARTGSVNLGQGFPDTDGPP
                     GVLEVARSAIASGHNQYPPGSGIRELRTAVAEHQAARYGLAHDPDTEVLITVGATEAI
                     SAALLALVQQGEQVLLIEPYYDSYAAAVALAGATRRAVPLVADGDRFALDLDALARAI
                     TPATRALVLNSPHNPTGTVLHRAELTTLAALAIEHDLLVITDEVYEHLVFDAAEHVPI
                     ATLPGMAQRTLSISSAGKTFSVTGWKIGWVCGPAPLVAAVRAAKQFLTFVGGAPFQPA
                     VAHGLRAEHQWVAAQRAALQDKQYRLANGLRAGGFGVRRSEGTYFICADIRPLGYSDG
                     LRFCRDLPARAGVVAVPVQVFADDRQSWRHLVRFAFCKRDEVLDEAIDRLASARL"
     gene            2200..3402
                     /locus_tag="VF788_01335"
     CDS             2200..3402
                     /locus_tag="VF788_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HEX8932845.1"
                     /translation="MKAVALAFLLGAAVVYVVTRLYQNAAPWVGYVQAMAEASMVGAL
                     ADWFAVTALFRHPLGLKIPHTAIIPRKKDALGENLGDFVGANFLAEVVVADKLHRVGV
                     SARLGNWLAQSLNAERATAEIATAVGAVMTVLRDEDVQAVMENALVKRILERPWGPPL
                     GRLLGQLLTDGTHHKLVDLLAERIYEWVRDNHAAVLRVVSQRLPGWSPRFIDELVADK
                     LYGEVLSFAWAVHTEADHPMRKAVDTFLLEFTEDLKTDPAMIERAEAIKLQVLAHPEV
                     QILLGSAWGTAKKMLLGAAEDPSSELRRRVHDGLMGFGGRLIEDAELRSKVDNWLQGV
                     AGYVVANYRGEITTLITDTVQRWDAQETARKVELQVGRDLQFIRINGTVVGALAGLVI
                     HTISQLLL"
     gene            3524..3817
                     /locus_tag="VF788_01340"
     CDS             3524..3817
                     /locus_tag="VF788_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005163559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2516 family protein"
                     /protein_id="HEX8932846.1"
                     /translation="METLDLLVYQILYWAAVPVGIFAFVHATLQRADAYTAADKLTKP
                     AWLGITGGASALLLLNLLVSGSMLFYLVGLVAVLVYLVDVKPAVTEVQRGPRW"
     gene            complement(3855..4607)
                     /locus_tag="VF788_01345"
     CDS             complement(3855..4607)
                     /locus_tag="VF788_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932847.1"
                     /translation="MRLVLVDVPDQDPSRLPAAAVPDSGIGAVLVSSRSLAEYRAMFA
                     LSDADLRRRLLDCPGGAASLTAEVNSAGGDAIACDPVYASLSAGQLDAQAETDRASRY
                     VRAHLEQYRWSFFIDPDDHHRHRSAAGVRFATDRRAHPHRYLPGELPNLPFAGNTFDL
                     VLSSHLLFSYADRLDLSFHRKGICELMRVTREELRIFPLVAMGAGVYPHLDQLLAQLA
                     NRHITARLADVDYEFQAGGNQMLICTHRFETG"
     gene            4657..5562
                     /locus_tag="VF788_01350"
     CDS             4657..5562
                     /locus_tag="VF788_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX8932848.1"
                     /translation="MGDHGHGSAPSDRRRLSRALAIISVVLLAEVVGAGLTGSLALLA
                     DAGHLATDVLGLAVALIATTLAQRPPSRYRTYGLGRAEILAAALNALVLLVVGAVVAV
                     EAVTRLTAPPPIASAPLLVIGALGLVGNLAALAVLAGGGSGEPSLNLRGALLEVMGDV
                     FGSVAVLGAALVMLVTGWRQADPIASLAIAALILPRALTLLREAAHVLLEGTPRGMDT
                     EEVDQVLRTVPGVRDVHDLHLWTITSGRHAVSAHLVVEEARSVHCGDASVLDAAAHAL
                     RTQFGLTHSTLQVEHGDHAAHEHTC"
     gene            complement(5647..>5855)
                     /locus_tag="VF788_01355"
     CDS             complement(5647..>5855)
                     /locus_tag="VF788_01355"
                     /inference="COORDINATES: protein motif:HMM:NF022161.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2505 domain-containing protein"
                     /protein_id="HEX8932849.1"
                     /translation="DGAPGTITGVMRLEPDPDGCVLGAQLTAEVPLPLFGGKVEKVIT
                     DSVARLMESEYQFTLSWLRKSAGP"
BASE COUNT          941 a         1874 c         2045 g          995 t
ORIGIN      
        1 gaccgcggaa gcccgctggt gtcgcgttca agaaggccgt aaggctgggt gaggccgtcg
       61 gtcagccagc tgtcgtggac tgcgacgtcc ggaccgttct tgctgccagc tccgcctccg
      121 gcaccaccga ttgtgcacag cgaagcggtg cttcccagcg gattccccgg catcggagac
      181 accggaccat cacccagcgc gggccggagg gtcatcggct ccgcggcgag ttgggcgggg
      241 gagtagacca tggcgggttt ggcatggacc gcaggagcgg atgcgggcgc cgacgcggca
      301 ccctgcgctg caacggtgag taccgcgggt gagaccgtcg cggatctgtc ggcctttgtg
      361 gatggcggca ttgtggccat ctgccgtgcg ggggccgagt gctgagcggg cccggacagt
      421 ggtcgggaca ccgggagggc ctggtccaga ggcttggcaa tgccgacggc tttcacgatg
      481 ggccgcagaa tgctgacctg cgccggcggc tgcacaggca gtcgcggtgt cgcagcagtg
      541 gacaacactt tcttgacgat cggctcgacc gcagctggcg tgccgaaccc gtcgtcagac
      601 ccgtcatcga atggcacggc attggcgaca tggatcaggc cagggctggg ctgtcccagg
      661 tcctcatccg catagctgat tcccgatccc agcaaccacc ccacgacgac cagaccaccg
      721 agcaggacga cccgaagcag cgcgcgtacc accccgcggg gcgcatacct cgcgccacct
      781 gcgttgggga tagcggccac cggtttcccc ctcaaccttg tgcccggtcc ggccttgccg
      841 gacattcact cgctaatact acacactgtg accactttgc gtaatatcag taatagcggt
      901 tcagcgggtt cctgccgtca cagcctggcg gacgtcacag cctggccgac gcgaggcggt
      961 cgatcgcctc gtcgagtacc tcatcgcgct tgcagaacgc gaagcgtacc aagtgccgcc
     1021 acgactgccg gtcgtcggcg aagacctgca ccggcactgc caccactccg gcgcgtgccg
     1081 gcagatcgcg gcagaaccgc aggccgtcgg agtacccgag cgggcggata tccgcgcaga
     1141 tgaagtaggt cccctccgat cggcgcactc cgaagccccc ggcgcgcagc ccgttggcca
     1201 gccggtactg cttgtcctgc aacgccgcgc gttgcgctgc cacccactgg tgctcagcac
     1261 gcagcccgtg ggccacggca ggctgaaacg gtgccccacc gacgaaggtg aggaattgct
     1321 tggccgcccg caccgccgcc accaagggtg ccggcccgca cacccaaccg atcttccagc
     1381 cggtgacgct gaacgtcttg cccgcgctgg agatggacag ggttcgctgc gccattccgg
     1441 gcaacgtcgc gatcggcacg tgttctgctg catcgaacac caggtgttcg tagacctcgt
     1501 cggtgatcac caacagatca tgttcgatcg ccagcgctgc aagtgtggtc aactcagcgc
     1561 ggtgcaatac cgtgccggtg gggttgtgcg ggctgttgag caccagcgcc cgggtggccg
     1621 gggtgatcgc ccgagccagc gcgtcgaggt ccaaggcgaa ccggtcgccg tcggcaacca
     1681 gcggtacagc gcgccgggtt gcgccggcca gcgcgaccgc tgcggcatag gagtcgtagt
     1741 agggctcgat gaggaggact tgctcgccct gctgaaccag ggcgaggagg gcggcgctga
     1801 ttgcctcggt agcgccgacg gtgatcagca cctcggtatc cggatcgtgt gccaggccgt
     1861 agcgggctgc ttgatgctca gcgacggcgg tacgcagctc acggatgccg gagccgggag
     1921 gatactggtt gtgcccgctg gcgattgccg atcgggcaac ctcgagtacg ccgggtgggc
     1981 cgtcggtgtc cggaaagccc tgaccgaggt tcaccgatcc ggtgcgcgca gccagtgcgg
     2041 tcatctccgc aaagatcgtc gaggtgaacg gctgcagccg ggggaccagt ccgtgggttc
     2101 gcacgggcgt catcctgctg cagttcggac cgtcaaggca caatcggcaa cgtggagctg
     2161 accaggagcg agcaggccaa gcaacgaggg ctgcgccgga tgaaggcggt cgcgctggcg
     2221 ttcctgctgg gcgccgcggt ggtgtacgtg gtgacgcggc tctaccagaa tgctgcgcct
     2281 tgggtggggt acgtgcaggc catggccgag gccagcatgg tcggtgcgct ggccgactgg
     2341 ttcgcggtga ctgcgctgtt ccgccacccg ctggggctga aaatcccgca caccgcgatc
     2401 atcccgcgca agaaggacgc gctgggggag aacctcgggg acttcgtggg cgccaacttt
     2461 cttgccgagg tggtggtggc cgacaagctg caccgggtag gagtcagcgc ccggctgggc
     2521 aactggctgg cgcagtccct taacgcggag cgcgccaccg cggagatcgc caccgcggtg
     2581 ggtgccgtca tgaccgtgct gcgcgacgag gacgtccaag cggtgatgga gaacgccctg
     2641 gtcaaacgca ttctggagcg accgtggggg ccgccgttgg gccggttgct cggtcagttg
     2701 ctcaccgatg ggacgcatca caagcttgtc gacctgctcg ccgagcggat ctatgagtgg
     2761 gtgcgggata accacgccgc ggtgctacgg gtggtcagcc agcgcctgcc aggatggtcg
     2821 ccgaggttca tcgacgagct ggtcgcggac aagctgtacg gggaggtgtt gtcgttcgcc
     2881 tgggcagtgc acaccgaggc cgatcatccc atgcgcaagg ccgtggacac cttcttgctt
     2941 gagttcaccg aagatctcaa gacagacccg gcgatgatcg agcgcgctga ggcgatcaag
     3001 ctgcaggtgc tggcgcaccc tgaggtacag attctgctcg ggtccgcgtg gggcactgcg
     3061 aagaaaatgc tgctaggcgc agccgaggat ccgtcctcag agctccggcg ccgggtgcac
     3121 gacggcctca tggggttcgg tggacgcctg attgaagatg cggaactgcg atccaaggtg
     3181 gacaactggc tgcagggtgt ggccggttac gtggtcgcca actaccgtgg cgagatcacc
     3241 acgttgatca ccgacacggt gcagcgctgg gacgcccagg agaccgcccg gaaggtggaa
     3301 ctccaggtgg gccgcgacct tcaattcatc cgcatcaacg gcactgtcgt cggcgccctg
     3361 gccggcctcg tcatccacac gatctcccaa ctcctcctct gactccctcg tcgctcggct
     3421 gctccccccg acatggagac atatcggggt caccgaactg gtttctgctc cgatatgtct
     3481 ccatgtcagg gcagcagagg cggccgcgta ttctgggtgt gtgctggaga cgctcgattt
     3541 gttggtgtac cagattctgt actgggctgc tgtcccggtc gggatcttcg ccttcgtgca
     3601 tgccacgctc cagcgggccg atgcctacac cgctgcggac aagttgacca agcccgcttg
     3661 gctgggtatc accggcggcg ctagcgctct attgttgctg aacctgctgg tgtcgggctc
     3721 gatgctgttc tatctcgtcg gcctggtggc cgtactggtc tacctggtgg acgtcaaacc
     3781 cgcggtgacc gaggtgcaac gggggccgcg ctggtgaggt cgctgcaccg acggccggac
     3841 ggccgaggtc ttggtcatcc ggtttcgaac cggtgggtgc agatcagcat ctgattgccg
     3901 ccggcttgga actcgtagtc gacgtcggcc agccgggcag tgatatggcg gttggcgagc
     3961 tgggcgagga gttgatcgag gtgcgggtag acgccggcgc ccatcgccac gagcgggaag
     4021 atccggagct cctcccgggt gacgcgcatg agctcacaga tcccctttcg atggaacgac
     4081 aggtcgagac ggtcggcata gctgaacagc aggtgcgagc ttagaaccag gtcaaacgtg
     4141 ttaccagcga acggcaggtt gggcagctca ccaggaaggt agcggtgggg gtgggcgcgc
     4201 cggtcggtgg caaaccggac accggccgcg ctgcggtggc ggtgatgatc gtcggggtcg
     4261 atgaagaagc tccagcggta ctgctcgaga tgagcgcgga catagcggct ggcgcggtcg
     4321 gtctccgcct gggcgtcgag ctggccggcg ctgaggctgg catagaccgg atcgcaggcg
     4381 atggcgtcgc ccccggcgga gttgacctcg gcggtaaggc tggccgctcc accggggcag
     4441 tccaggagcc gccggcgcaa atccgcatcg gaaagggcga acatggcccg gtactcagcc
     4501 agtgagcgcg agctgaccag taccgcaccg ataccgctgt cgggcactgc agcagcgggg
     4561 aggcgggaag gatcctggtc gggcacgtcg accaagacta gcctcaccct gccggagacc
     4621 taacccatgc gcgaacatgc atgtatggtg acgcgcatgg gcgatcacgg acacggatcc
     4681 gctccgtcag accgtcggcg gctaagccgg gcgttggcga tcatctccgt ggtgctgctg
     4741 gccgaggtcg tcggcgccgg cctgaccggt tcgctggcgt tgctcgccga tgccggacat
     4801 ctggccacgg acgtgctcgg cttggcggtc gcgctgatcg ccaccacgct cgcgcagcgc
     4861 ccgccgagtc gctaccggac ctatgggctg ggccgggcag agatcctcgc cgctgcactc
     4921 aatgcactgg tgctgttggt cgtgggcgcg gtggtggcgg tcgaggcggt caccaggctt
     4981 accgcgccac cgccgatcgc cagtgctccg ctgctggtca tcggggcact ggggcttgtt
     5041 ggtaatctgg ctgccctggc ggtgctcgcc ggcggcggct ctggcgaacc cagcctcaac
     5101 ctgcggggcg cgctgctgga ggtgatgggc gatgtgttcg gctccgtcgc ggtgcttggt
     5161 gcggcgctgg tcatgctcgt caccggctgg cgccaggcgg accccatcgc atcgctggcg
     5221 atcgccgcgc tgatcctgcc ccgggcgctg accttgctcc gcgaggcggc gcatgtgctc
     5281 ctggagggca ccccccgagg catggacacc gaggaggtgg atcaggtttt gcgcaccgtg
     5341 ccaggtgtac gtgatgtgca cgacctgcat ctgtggacga tcacgtcggg ccggcacgcc
     5401 gtctcggcac acctggtcgt cgaggaggcc cggtcggtcc actgcggaga tgcctcagtg
     5461 ctcgacgccg ccgcgcacgc cctgcgtacc caattcggtc tcactcacag cactttgcag
     5521 gtcgagcacg gcgaccacgc cgcccacgag cacacctgct gacccccgcg tgtcgcgcgt
     5581 tcccgctcgg tgtgtcgcct tctcgtgctc aggttcaacc cgcgcgctgt gccacgagag
     5641 caccgtttag gggcccgcgg acttgcgcag ccaactcagc gtgaactgat actccgattc
     5701 catcagtctg gcgacgctgt cggtgatgac cttttccacc ttcccgccga acagcggcag
     5761 cggaacctca gccgtgagct gggcgccgag cacgcaccca tcagggtcgg gctcgagacg
     5821 catcacgccg gtgatcgtgc ctggagctcc gtcga
//
LOCUS       DASVXZ010000074         2910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1617800, whole genome shotgun sequence.
ACCESSION   DASVXZ010000074 DASVXZ010000000
VERSION     DASVXZ010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1617800"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VF788_01360"
     CDS             <1..358
                     /locus_tag="VF788_01360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932850.1"
                     /translation="QVSTLGVGTIILFDFFGPTSRGINVPVLLTVGEKDAIFCGALAR
                     DCSSAEALRKGEALYFGRAAELSTYVLPEAGHSLALHKNAADYREATRAWLRAQLGIR
                     PSTVGGDLVPVARSRG"
     gene            664..984
                     /locus_tag="VF788_01365"
     CDS             664..984
                     /locus_tag="VF788_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932851.1"
                     /translation="MTESEATPQDTDLEPKSSTEASAADVSQAADEPTADVSQGAGEP
                     TADVSEAGEEEETTPNYQEEGEEKAAADYQTRLEEWDNVESSVPVVSLPVESRDLDKS
                     DLEV"
BASE COUNT          536 a          839 c          968 g          567 t
ORIGIN      
        1 ccaggtatcg accctcggcg tagggaccat aatattgttc gacttcttcg gcccgacttc
       61 gcgcggaatc aatgttcccg ttctgctgac ggtcggcgaa aaggatgcca ttttctgcgg
      121 tgcgctcgct cgcgactgtt cgagtgccga ggcgttgcgg aaaggggagg ctctctactt
      181 cggtcgggcc gctgagctat caacctatgt cctgccggag gccggacact ccttggcgtt
      241 gcataagaac gcggccgatt accgggaggc tacgcgagca tggcttcgcg cgcagttggg
      301 tatcaggccg tcgacggtag gtggcgatct cgtcccggta gcgcggtcaa gaggctgacg
      361 gtagcctgca agtgatcgtc ggtacacacc gtcacgtaca gccacactgt gtagttcccg
      421 cagctgtgcg gtagcgcacc tgcggctacc ggtattcgat gagcttgtct gatcggtaga
      481 tctctgtgac caccggagcg tggtgggcgt gcctcgacgg tgggagttcc tagcgtcatc
      541 aagtggctgc gtgccctgcc atatcacacg atgggaccag cgacgtttga agatcttccc
      601 tcagggtatg cagacgcata ttcttattaa actgatgggg ggaacacaga aaggatttat
      661 gcgatgactg agtcagaagc caccccccag gacaccgacc tcgaacccaa gtcttcaacc
      721 gaagcgtcag cggccgacgt cagccaagcg gcagacgagc caacggccga cgtcagtcaa
      781 ggggccggtg agcccacggc cgacgtcagc gaagcgggag aggaagagga gacgactccc
      841 aactaccagg aggaaggcga agaaaaggct gccgccgact accaaacacg cctggaggaa
      901 tgggacaacg tcgagtcatc ggtcccggtg gtctccttgc cggtggaatc ccgagacctc
      961 gataagagcg acctcgaggt gtaatcgtta cccgaggcaa cggctggtct cggctgtggt
     1021 tcgaccggcc atcgcagcct cagcgaggat gcgggttcca cccgtccgct gacgaggttg
     1081 ctggagggtt gtgctgcgac atcgacccgc ggccttgacc gccagcccgg tgaagtgtgg
     1141 aagcccgatg tcacgtctag ttcggcctgc attgggtacg caaaaatgaa attttttgca
     1201 gagtcagcaa tgggatgtca ctttgctgat ctgcatttct cgccgagcgg ccgcgaacca
     1261 accgctctag actcccaggt gcgttcagcc agttcactgg gggatggcac cagaacaggt
     1321 gcgcaggtgc gtcgcgcaag ccggagtcac ccggctgggc aactgcggac accagcaggc
     1381 gcctgaacct cgtgccaatg gtgttcgcgc cgctccggtc acgcgttgtt agcgtaccag
     1441 ccgatccgga ccctgaaaca gcacgccagc cctggctcct agggtggtgt gctgatcttt
     1501 gactatgtga gtgatcaaga cattccgagt tcagtaggcg ggatcactga gtgaccacga
     1561 tctattgcgg tgatgatggg gagatcgcag tggttgaccg caggacgagg ctggtcaact
     1621 cggttccagg cacaaggatg acgatttgcg ccgcacttct gaggtacgga tgcgcggacc
     1681 ggtggaccca tcggccaagc gcacgcgtgc ggcaagctga tcgtgcccga cacgctgctc
     1741 acccggcagt tcgccgacgc tggcttggag ctgaccaacc ttggtggagt ggcggacctc
     1801 tctccctgtt cttattcccg gggagagaat cagccgtaaa gatgaccttg ggatgctggg
     1861 cgagcccgac tgcttctacc gggccatcaa ggtgtgagtg agagcgcacg gtcctgccca
     1921 atactgcggc gccacacacc aggaggtcct tgatggacga gctgagatcc gcgtctccga
     1981 cattcacggc cgtgaattgt tcgccacccg gaccttcgca gcaggcaaag ccacagtgct
     2041 gcgcataggt cactgcgcgc gtccgcgacg gcaggggcaa cgtctgttgc gaggtgctgc
     2101 ggtaccacgc agtccgcacg tgcggttcct taatcgggtg tgaggtcggc tggcggtggt
     2161 ctggtgattc ggtgacacgg tgacgtgcca ggatgccccg tgttgctgtg ccgtataggg
     2221 cgaatggatc ccctggcgta tccatcccgc ggcggcattg gcggagaatc cggccgcgat
     2281 ccactgcgtg gccagggtca ccggatgcat gtcagccttg ggcgcctcgt ctcgcacgag
     2341 atgcgcgagt ttgattagct cagcatttgt gcatacgtag ccaatgcgat gtcgattctg
     2401 ccgcgtaccg gggtccgcgg aggaatcctg gaacaggtgc agcccacgtt cggccagcag
     2461 ttctcgggtc ctggcgtggg gctccggttg cgagatcggc acgcctgagg tgatccagtc
     2521 cacgactgtc ctggatgcca tgccaccgtc gagctggtga aactccaatg tccagaaggt
     2581 tcctaccgag cggcaccacg ccgcgagcag cacgggcgcc gtcgcagtga cgtggtttga
     2641 agttgatcgc tcaagcacgg gcttccgacg ggtgctccgc acaatctcgc tgcctgtcat
     2701 ggtggctcct aggcggtcgg gtgtgagcgc ttattggtag cggagctcgg gaggccggtc
     2761 cggtcaccgc gcctgcggta ggaaggccgt tgccgtccgt ggtggtaggg gtgcgccggc
     2821 agggtgcctg ggcaaggggc atggcacccc gccggcgggc agtggactgg tttcgggctt
     2881 actggtggga cggggtcagg cgttgatttg
//
LOCUS       DASVXZ010000075         4596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1532510, whole genome shotgun sequence.
ACCESSION   DASVXZ010000075 DASVXZ010000000
VERSION     DASVXZ010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1532510"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1056
                     /locus_tag="VF788_01370"
     CDS             88..1056
                     /locus_tag="VF788_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8932852.1"
                     /translation="MRAGSVTPTATATPSGRGAPAIRVQGLRKVFGHTVAVSSVDLDV
                     PTGAVLGVLGPNGSGKTTMIRMLLALSRPTAGTVELLGKKVPAAAREVLPHVGALVEG
                     PGFHPFLSGRENLRRCAAAEPLLSTQAIPDAVERALQRVDLAEAAGRRYRAYSLGMKQ
                     RLGLAAVLLVPRRLVVLDEPTNGLDPAGTREVRRIIAELHAGGATVLVSSHLLTEVEA
                     TCTHVAVLDHGSLIAAGPLTALLDGEAPALDVRTPDSTVAVQALRAAGIGAATCPDGV
                     RVELTGTDPPTVVALLVGAGVAVHEVRRWRTGLDELFAQLTEGNGS"
     gene            1053..1913
                     /locus_tag="VF788_01375"
     CDS             1053..1913
                     /locus_tag="VF788_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX8932853.1"
                     /translation="MTASEVGNAPLTGPMRAPLVRLLRSELRWVLRRPRTQIALGLLA
                     LVPVLIGIGIVATDGPGGSGLLTQVAGNGLVLPIAALSISLALLLPLAVTMAAADALA
                     GESAHGTLRGLLLAPVSRTRVVLVKAVGVLAVAVAAVAAVTVLGIVTGLVLVGSSGTA
                     HGMLTLSGTEIGPGSALLRVSLAAAWTVGQLAAVGAVALAVSSATEHPLVVLAAVLGG
                     LIVFGVLSTIPALDWLQPMLLTTGWFAITDVLRDPLPLDGLASSSLRAGCYLLIALVL
                     TLARTATREA"
     gene            2111..2413
                     /locus_tag="VF788_01380"
     CDS             2111..2413
                     /locus_tag="VF788_01380"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX8932854.1"
                     /translation="MTTLLDDERVAAALDQLTSWHRDGDTIVRTAKLPTFPAAIEAVR
                     AVAEIAEARNHHPDIDIRWRAVTFRCSTHSKGGITTLDIQLASEIDRVLAEANATS"
     gene            complement(2457..2615)
                     /locus_tag="VF788_01385"
     CDS             complement(2457..2615)
                     /locus_tag="VF788_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932855.1"
                     /translation="MVPPNTQPVVATAISTVVATRSGCGVYGEPDDEDVALVPHAGLL
                     HAAELSRS"
     gene            2695..2865
                     /locus_tag="VF788_01390"
     CDS             2695..2865
                     /locus_tag="VF788_01390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932856.1"
                     /translation="MTERHGLDHNMQVDAEKHEGPQQDSQEKGQEFADGMDRVSVSKR
                     YHYTDDYIQETE"
     gene            complement(3249..4331)
                     /gene="ychF"
                     /locus_tag="VF788_01395"
     CDS             complement(3249..4331)
                     /gene="ychF"
                     /locus_tag="VF788_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003884384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX8932857.1"
                     /translation="MSLTLGIVGLPNVGKSTLFNALTRNNVLAANYAFATIEPNVGVV
                     PLPDERLGRLAELFDSAKVVPATVAFVDIAGIVAGASEGAGLGNKFLANIREANAICQ
                     VVRVFDDPDVLHVDGRVDPADDIATVETELVLADLQTLDRALPRLEKEARTSPRERRA
                     ALAVAQAARQVLDTGRTLFAARAEQDITAIAELSLLTSKPFLYVFNSDEGVLTDSDRQ
                     AELRKLVAPADAVFLDAKVESELLELDEESARELLDSIGQPEPGLHALARAGFHTLGL
                     QTFLTAGPKESRAWTIRAGATAPEAAGVIHSDFQRGFIKAEIVSYEDLVSAGSMSAAR
                     AAGKVRMEGKGYVMAEGDVVDFRFNV"
BASE COUNT          717 a         1519 c         1571 g          789 t
ORIGIN      
        1 cgcggtgggc accgtgctgg tgacctccga gggccgggtc gccgccgggg ctgtgccaca
       61 gcaggtgctc gacgaggcct tggccaggtg agagcaggtt cggtcacccc taccgcgacg
      121 gccaccccgt ccgggcgtgg cgcgccagcg atccgggtcc agggactccg caaggtgttc
      181 ggtcacaccg tcgcggtgtc ctcggtggac ctcgacgtgc cgaccggtgc cgtgttgggt
      241 gtgctgggcc ccaacggctc gggcaagacc acgatgatcc ggatgctctt ggcgctgtcc
      301 cggcccaccg ccggcactgt ggaactgctc ggcaagaagg tgccggccgc cgcccgggag
      361 gtgctgccgc acgtcggtgc gctggtggaa ggccccggct ttcacccgtt cctgtccggc
      421 cgggagaacc tacggcgatg cgcagcagcc gagccgctgc tgtccaccca ggcaataccc
      481 gatgccgtgg agcgcgcctt gcagcgggtg gatctcgcgg aggcggcggg tcggcgctac
      541 cgggcctact cgctgggcat gaaacagcgc ctgggcctgg cggcggtgtt gctggtgccc
      601 cgccggctgg tcgtgctcga tgaaccgacc aacggcctgg acccggcggg aacccgggag
      661 gtccggcgga tcatcgccga gttgcacgcc ggcggcgcca ccgtactcgt gtcctcccac
      721 ttgctcaccg aagttgaggc gacctgcacg cacgtggcgg tgctcgacca cgggtcgttg
      781 atcgccgcgg gcccgctcac tgccctgctc gacggtgagg cgcccgcgct ggatgttcgt
      841 accccggatt ccaccgtcgc ggtgcaggca ttgcgtgccg ccgggatcgg tgctgcgacc
      901 tgtccggacg gggtgcgcgt cgagctcacc gggaccgacc cgcccacggt ggtggcgttg
      961 ctggtcggcg ccggggtcgc ggtgcacgag gtgcggcgct ggcgaacggg gttggacgag
     1021 ctgttcgccc aactgaccga ggggaacggg tcatgaccgc cagtgaagtg ggcaacgccc
     1081 cactgaccgg ccccatgcgt gccccactgg tgcggttgct gcgcagcgag ctgcgctggg
     1141 tgctgcgccg cccacgaacc cagatcgcgc tgggcctcct cgcgctggtc ccggtgctga
     1201 tcggaatcgg catcgtcgcg accgacgggc cgggcggctc aggactgctc acccaggtcg
     1261 ccggtaacgg gctggtgctg ccgatcgcgg cgttgtcgat ctccctggcg ttgctgctgc
     1321 cgttggccgt cacgatggca gccgccgacg cgctggccgg cgagtctgcg cacggcacgc
     1381 tgcgcgggtt actgctggcc ccggtcagcc gtacccgggt ggtgctggtc aaagcggtcg
     1441 gtgtgctggc cgtcgcggtg gcggcggtcg ctgcggtcac cgtgctgggc atcgtcaccg
     1501 gcctggtgtt agtcggctcg tcaggaacgg cgcacggcat gctcacgctg tccggcaccg
     1561 agatcgggcc ggggtcggcg ctgttgcggg tctcgttagc ggccgcctgg acggtcgggc
     1621 agctcgccgc agtgggcgcg gtggcgctgg cggtgtcctc ggccaccgag cacccgttgg
     1681 tggtgctcgc ggcggtgctg ggtggtctga tcgtgttcgg ggtgctctcc accatcccgg
     1741 cgctggactg gctgcagccg atgctcctca ccaccggctg gttcgcgatc actgacgtgc
     1801 tgcgtgaccc gctaccgctg gacgggttgg cctccagcag tctgcgggca ggctgctacc
     1861 tactgatcgc cctggtcctg acactggcca gaacagcgac ccgcgaagcc tgacctctca
     1921 ccccggcggg tcggtctcct gtgcacggtg tgtcgacttc tcaggccgtg gaaccccgac
     1981 atgcatcccg accacaaaat cgtctggtta tcgtcggtat ccccggctcg gacatcccat
     2041 cccgacctgg tcacgtttcc gcgcggtgcc ggttgcctga gccagtgccc cgcgcgagga
     2101 ggatggtggc atgacgacac ttctggacga cgagcgggtg gcagcggcct tggaccaact
     2161 caccagctgg catcgcgacg gtgacacgat cgtccgtacc gcgaaactac ccactttccc
     2221 agcagccatc gaggccgtcc gcgcggtggc cgagatcgcc gaggcgcgca atcatcaccc
     2281 cgacatcgat atccgctggc gcgctgtgac gtttcgctgc agcacccact ccaaaggagg
     2341 gataaccacc ttggacatcc agctcgccag cgagatcgac cgcgtactag ccgaggcaaa
     2401 cgcgacgagc tgagggaccg cagcgttgtc gccgagttcg acatcagagc tcttgttcac
     2461 gacctggaga gctctgcagc atggagaagc ccggcatggg gtacgagtgc gacgtcctca
     2521 tcgtcaggtt ccccgtagac gccgcacccg ctgcgcgttg ccaccactgt cgagatcgcg
     2581 gtcgccacca ccggctgggt gttcggcggc accatcggcg tctaccgtgc tttacgcctc
     2641 gcgatcggtc ctttggcccg gttgctcctt ctcgacttac agcgtccgcc cctgatgact
     2701 gaacggcacg gtttagacca caacatgcag gttgacgccg agaagcacga ggggccacag
     2761 caggacagcc aggagaaagg acaggagttc gccgatggta tggatcgagt atccgttagt
     2821 aagcgctacc actacaccga tgattatata caagagaccg aatagagaca cgccatattc
     2881 gtgcatgttc ttctcctttg attccgggca attgcaagaa ctacgtcacc gagccgcgcg
     2941 gaggaccgca gcaccgtatg ataggcattg accgccgtgg tgaccggccg ccgagtcatc
     3001 cagacgccag gcttgggctg cgatgccacg cgcgtgcgcg gagcatgtgt cagccgatcc
     3061 gccttcggca cggccctccc tcgtcgtgta cagagtgtaa tccaccatgc ccgggcctgg
     3121 gaacgctcga aattaaagga tctgcgcggc ctgcagactg acaagagcgg cagcgtagtg
     3181 cgcgtcagcc aggtactgca tcggagcacc gcacaccgtg cccccagtag accgatatcc
     3241 gtcggacgct aaacgttaaa gcggaagtcg accacgtcac cctcggccat cacgtaaccc
     3301 ttgccctcca tccggacctt cccggccgcc cgcgctgcgg acatagatcc ggcggaaacc
     3361 agatcctcat aggacacgat ttctgccttg atgaacccgc gctggaagtc gctgtggatc
     3421 acaccggctg cttctggagc ggtggctccg gctcggatcg tccacgccct cgactctttc
     3481 ggaccggcag tgagaaaagt ctgcagcccg agggtgtgaa aacccgcgcg agccagcgcg
     3541 tgcagtcccg gctcaggctg cccgatcgag tccagcagct cccgggccga ttcctcgtcg
     3601 agctcaagca gctcggattc gaccttagcg tcgaggaata ccgcatcggc gggagcgacc
     3661 aacttgcgca actccgcctg ccggtcggaa tcggtgagta cgccctcgtc ggaattgaag
     3721 acatacagga acggcttgct ggtcagcaga ctgagctcag cgatcgccgt gatgtcctgt
     3781 tcggcgcgtg cggcgaacag ggtgcgcccg gtgtcgagca cctgcctggc ggcctgcgcg
     3841 acggccagtg cagcgcggcg ctcccggggg ctggtgcggg cttccttctc cagccggggc
     3901 agcgcgcggt ccagagtctg cagatcggcc agcaccaact cggtctctac ggtggcgatg
     3961 tcgtcggccg ggtcgacccg accgtcgacg tgcaatacgt cagggtcatc gaagacccgc
     4021 acgacctggc agatcgcgtt ggcctcgcgg atattggcga ggaacttgtt gcccagccca
     4081 gcgccctcgg atgccccggc gacgataccc gcgatgtcga cgaaggccac cgtggccggc
     4141 acgaccttgg cgctgtcgaa gagctccgcc aaccgcccga gacgttcgtc gggcaatggc
     4201 accacgccga cgttgggctc gatggtggcg aacgcgtagt tcgccgcgag gacgttgttg
     4261 cgggtcagcg cattgaacaa ggtggacttg cccacattgg gcaacccaac gatccccaga
     4321 gtcaggctca tgagacatcg agtttaggcg cccctcccac agctactcgc attgagcggg
     4381 ctcaaggcga gggaggcggc gcgcctcgcc gaaactgtcg gtggggtgtt gcagggtgtg
     4441 acgcgtggat tacttagtgc tcatgggctt cgtcggcggg ctggtggtgg gaggactcgt
     4501 cagctggttg gtggcggggg cacttcggcg tgcggcagtg ggtgaggccg tgcaggcggc
     4561 ggatgccgcc aggattggcg ccgaggccga gctcgt
//
LOCUS       DASVXZ010000076         1637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1259400, whole genome shotgun sequence.
ACCESSION   DASVXZ010000076 DASVXZ010000000
VERSION     DASVXZ010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259400"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1637)
                     /gene="acnA"
                     /locus_tag="VF788_01400"
     CDS             complement(<1..>1637)
                     /gene="acnA"
                     /locus_tag="VF788_01400"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017988109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEX8932858.1"
                     /translation="FTGVPCLVDLATMREAVAELGGDPRAVNPLAPAELVIDHSVIAD
                     VFGRPDAFERNVDLEYQRNWERYQFLRWGQRAFDEFRVVPPGTGIVHQVNLEHLARVV
                     TTRHGLAYPDTVVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPLSMLIPRVVGCKL
                     TGSIPPGATATDVVLTLTEMLRRHGVVGKFVEFYGDGVAAVPLANRATIGNMSPEFGS
                     TCAIFPIDRETMRYLELTGRPAEQLALIEAYAKEQDLWHDPSREATYSEYLELDLSIV
                     VPSIAGPKRPQDRIALTDAKTAFRRALAGYTHDTASTVDEAGIESFPASDAPALSRGD
                     GDGDGDGDSGEPHTTSSAAARALGRPSSPTPVQLDGADVEIDHGAVVIASITSCTNTS
                     NPSVMIGAALLARKAVDAGLAVKPWVKTSMAPGSQVVTDYYQKADLWPSLEKLGFHLV
                     GYGCTTCIGNSGPLPQEVAHAVRGADLAVVSVLSGNRNFEGRINPDTAMNYLASPPLV
                     IAYALAGTMDFDFSTDPLGFDRDGKPICLADIWPSPE"
BASE COUNT          296 a          532 c          539 g          270 t
ORIGIN      
        1 cttctggcga gggccagata tcggccaggc agatcggctt accatcgcga tcgaacccta
       61 gcggatcagt actgaagtcg aagtccatcg ttccggcgag cgcgtaggcg ataaccaacg
      121 gaggtgacgc gagatagttc attgccgtgt cgggattgat gcgaccctcg aagttgcgat
      181 tgccggacag cacgctgacc accgcaagat cagcgccgcg gacggcgtgc gcaacctcct
      241 gcggcagcgg gcccgagttg ccgatgcagg tggtgcaacc gtaaccgacc aggtggaagc
      301 cgagcttctc caaggacggc cacaggtctg ccttctggta gtagtcggtg accacctgcg
      361 agcccggagc catcgacgtc ttcacccatg gcttgacggc caagcccgcg tcgacggcct
      421 tgcgagcgag cagcgcggcc ccgatcatca ccgaggggtt ggacgtgttg gtgcacgagg
      481 tgatcgaggc gatcaccacg gcaccgtggt cgatctcgac gtcggcgccg tccagttgca
      541 cgggcgtggg ggagctggga cggcccagtg cacgggccgc agcggagctc gtcgtatgcg
      601 gttcaccgct atcaccatca ccatcaccat cgccgtcgcc acggctcagc gcaggggcgt
      661 cgctggctgg aaacgattcg ataccggcct catccacggt ggacgccgtg tcgtgcgtgt
      721 agccggccag cgctcgccga aatgccgtct tggcgtcagt cagtgcgatc cgatcctgcg
      781 ggcgcttagg ccccgcaatg gacggcacca cgatggacag gtccagttcg aggtattcgg
      841 agtaggtggc ctcccggctc gggtcgtgcc agagatcctg ctccttggcg taggcctcga
      901 tcagtgcgag ctgctcggcc ggacgaccgg tgagctccag gtagcgcatc gtctcccggt
      961 cgatggggaa gatagcgcac gtcgagccga actccggact catgttgccg atagtggcgc
     1021 gattggccag cggcaccgct gcgactccgt caccgtagaa ctcaacgaac ttgccgacca
     1081 ccccgtgccg gcgaagcatc tccgtcaagg taagcacgac atcggtggca gtcgcccccg
     1141 gcgggatgga tccggtgagc ttgcaaccaa caacccgcgg gataagcatg gacagcggct
     1201 gaccgagcat ggcggcctca gcctcgatgc cgcccacgcc ccaccccagc acaccgagcc
     1261 cgttgatcat cgtggtgtgg ctgtcggtgc ccaccacggt gtccgggtag gccagtccat
     1321 ggcgggtcgt gacgacccgg gccaggtgct ccaaattgac ctggtgcacg atcccagttc
     1381 cgggtggcac caccctgaac tcgtcgaagg cacgctgacc ccagcgtagg aactggtatc
     1441 gctcccagtt tcgctggtat tccaggtcaa cattgcgctc gaaggcgtcc gggcggccga
     1501 acacgtcagc gatcacggag tgatcgatga ccagctcggc cggggcgagc ggattgaccg
     1561 ctcgcgggtc cccacccagc tccgcgaccg cttcgcgcat ggtggcgaga tcgaccaggc
     1621 agggcacacc ggtgaag
//
LOCUS       DASVXZ010000077         5095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1711734, whole genome shotgun sequence.
ACCESSION   DASVXZ010000077 DASVXZ010000000
VERSION     DASVXZ010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5095
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1711734"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..424)
                     /locus_tag="VF788_01405"
     CDS             complement(194..424)
                     /locus_tag="VF788_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932859.1"
                     /translation="MFGGEAGDSEDGGGGDGAVGEVAVALDQEGLAGAGEADFVVLVD
                     RVGEVDDLEDAYVAAAVSFVLLGVADLDGGPG"
     gene            complement(428..586)
                     /locus_tag="VF788_01410"
     CDS             complement(428..586)
                     /locus_tag="VF788_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932860.1"
                     /translation="MIFSSENADDCHDSGGGAGSDSGGVFFEGDVADVVEHLDVPVAA
                     DDLGEVGG"
     gene            complement(576..971)
                     /locus_tag="VF788_01415"
     CDS             complement(576..971)
                     /locus_tag="VF788_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932861.1"
                     /translation="MNHELSAALRAHASGIYCLEAAAKLIIGHHTLLYRSDFTGFIVT
                     DLSIIDDTEIASIDWPAAISALDTGELPCSGGEQRILRLAASLADGIPVSLRDTLIGL
                     DDRNIKLVVTAVLHTSGRQSPPTIQDHDL"
     gene            complement(968..3415)
                     /locus_tag="VF788_01420"
     CDS             complement(968..3415)
                     /locus_tag="VF788_01420"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEX8932862.1"
                     /translation="MTTGFQEPVVVSALLAVGHEVVGDRFPARRPAADWPVTRQSHRE
                     VFGRLTCPPFVLDSAGSQKQRRRGVELLLDWLADQPGESWQQRWRASGADPAGADWRQ
                     VPAQWLHDRSLYSEGRNALLCAALTVAICADIVRPSLPWFVASVTRGGALARCMARIR
                     DVEGFARLRELCDHDPHASAAAQGHIVHRAAVIIAAKGGAIADITIGDALELLDAEAN
                     THSSPMVHGTAFYRMLHQMGVFGPSAPHRLRELRSTRQRTPEELIDRYHLSCRPVRDL
                     LVDYLRERQPALDYSSLRSLAADLGNVFWKDLERHHPGIESLHLPTEVAQAWKQRLRS
                     RPKTVVTDTGEKTVITVERIGYRQCLTPVRAFYLDLAHWAIEDPGRWGRWVAPCPVGE
                     EEINQRKAARHRKSRMDARTRERLPVLPVLVHTVDERRKTAEVLLQAARQTCPGDTFT
                     TAGQTLTRSIIARPTATEKIWVDDPITGRRRDLGVEEDLAFWAWAAVEVLRLTGVRVE
                     ELLEISHHSLVQYRLPTTGELVPLLQIAPSKTDEERLLVVSPELADVLSVIIRRIREP
                     SGAVPLVPAYDRRECVWLAPCPILFQRQFGVENRRICDSTIRNMLNITLAHTGLVDPA
                     DGRPLHYTPHDFRRIFITDAIMSGLPPHIAQIIAGHRDINVTLGYKAIYPEEAIQAHL
                     TFLARRRALRPGEEYRVPIDEEWKKFLGHFELRKVATGTCGRAFSTPCIHEHSCLRCP
                     MHWPHPAQRPRIAEIRDNLTARIAEAQREGWLGEVEGLKISLAGANDKLAQIDRRLPT
                     TKTVDLGIPTAVLTGNP"
     gene            complement(3415..4650)
                     /locus_tag="VF788_01425"
     CDS             complement(3415..4650)
                     /locus_tag="VF788_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8932863.1"
                     /translation="MIGEDALSRDLAELVVPQVGRLVATGERYEPYRLVDANGAAVDG
                     VTAFFRDLLAAGRSESTVRSYGMDLLRWFRFVWAAEGVAWDRVTRIEARDFSRWMQVA
                     GKRSRPHWRKRGETVVDALDTTPVGEAYAPSVRAHCETVLRAFYGFHRDVGTGPIINP
                     FPLDRSRRGGRAHAHHNPMEPYRNERSGRYRPTVPTRIPRSVPDEEFNEIFARLPSHR
                     DRALVAFYVSTGARASELLSVTLGGVDSGRQLITVVRKGTRELQQLPASTDAFVWLRL
                     YQVEMEELIPNGRRQPLWWTLRRPARPLTYHAVHRMFERANDRAGTAATLHSLRHTAA
                     YRMAEDPALPLTDVQLVLGHSQLTTTQLYLTPRKEDVVRRVLAHHAEATRQAAERARP
                     APAPGYRPETLDVLFWNKA"
     gene            4884..>5095
                     /locus_tag="VF788_01430"
     CDS             4884..>5095
                     /locus_tag="VF788_01430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932864.1"
                     /translation="MYIVQRATCDVYLGRGAQVVPVLEPRLMPLVRSSLRTATITRAK
                     LARAYANAGQPGEACRVAWETLDVIE"
BASE COUNT          912 a         1692 c         1612 g          879 t
ORIGIN      
        1 tatgccgacc ccgccgcccg agacgccgcc accaccagcg cctccgagca acggggtcgg
       61 cataacccgc aggtcctcat aagacgcact ccacacccaa cgcgcccacg ccagctacct
      121 gcgcgaacac ggcggtaact acatcctgat cgccaaagga aaccaacctg ccctttacgc
      181 ggccctcgac gacctaccct ggaccaccat cgagatcggc cacaccgagg agaacaaagg
      241 acacggccgc cgcgacgtac gcgtcctcaa ggtcatcgac ctcaccgacc cggtccacca
      301 acaccacaaa gtccgcttcc ccggcgcccg ccaagccttc ctgatcgagc gctaccgcca
      361 cttccccgac ggcaccatca ccgccgccgc catcctcgga atcaccagcc tcacccccga
      421 acatgcctca cccgccgacc tcgccgagat catccgcagc cactggcaca tcgaggtgct
      481 ccaccacatc cgcgacgtca ccttcaaaga agacgcctcc agaatccgag ccggcaccgc
      541 cgcccgagtc atggcagtca tccgcattct ctgaactaaa gatcatgatc ttggattgtg
      601 ggcggtgatt gccgtcctga ggtgtgcagt acggctgtga ccaccagctt gatattgcga
      661 tcgtctagcc cgatgagggt gtcgcggagg ctgactggaa tgccgtcggc caggctggct
      721 gccaggcgga gtatccgttg ctcgccgccg gagcagggca gttcgccggt gtcgagtgca
      781 ctgattgcgg cgggccagtc gatgctggct atctctgtgt cgtcgatgat gctgaggtcg
      841 gtaacgatga agccggtgaa gtcgctacga tacagcaagg tgtggtggcc gatgatcagt
      901 tttgcggcgg cttcaaggca gtagatgccg ctggcgtgag cgcgtagcgc ggcgctcagt
      961 tcgtggttca tgggtttccc gtcaagacgg cggtggggat gccgaggtca accgttttcg
     1021 tggtgggtag gcgcctgtcg atctgggcga gcttgtcgtt ggcgccggcg agactgatct
     1081 ttagtccttc gacttcgccg agccagcctt cgcgttgcgc ttcggcgatg cgggcggtga
     1141 ggttgtcgcg gatctcggcg atgcgggggc gctgggcggg gtggggccag tgcatcggac
     1201 atctcaagca actgtgctca tggatgcacg gggtggagaa cgcgcggccg caggtgccgg
     1261 tggcgacttt gcggagttcg aagtggccga ggaacttttt ccattcctcg tcgatgggga
     1321 cgcggtattc ctcgccgggc cgcaacgcac gccgtcgggc caggaacgtc aggtgggctt
     1381 ggatcgcctc ctcgggatag atcgctttgt agcccagtgt gacgttgatg tcccggtgac
     1441 ctgcgatgat ctgggcgatg tgcggaggta ggccgctcat gatggcgtca gtgatgaaga
     1501 tcctgcggaa gtcgtgcggc gtgtagtgca gtgggcgtcc gtctgcgggg tcgaccaggc
     1561 cggtatgggc aagggtgatg ttgagcatgt tacggatagt gctgtcacag atcctgcggt
     1621 tctcgacgcc gaactggcgt tggaacagta tcgggcacgg ggctagccac acgcattctc
     1681 gccggtcgta ggcagggacg agtggtactg cgccggaagg ttcacggatc cggcggatga
     1741 tgacggagag tacgtcagcg agttccgggg agaccaccaa gagtcgctct tcgtcggtct
     1801 tcgatggggc gatctgcagc agcggcacga gttcaccggt ggtgggcagc cggtattgca
     1861 ccaggctgtg gtggctgatc tccagcagct cctcaacgcg aacgccggtc aggcgaagca
     1921 cttccactgc ggcccaagcc cagaacgcga ggtcttcttc cacacccagg tcgcgtcttc
     1981 tgccggtgat cggatcatcc acccagatct tctccgtggc ggtgggcctg gcgatgatcg
     2041 agcgagtcag cgtctgcccg gctgtggtga aggtatcccc gggacaggtc tgacgggcgg
     2101 cttgcagcaa cacctcggcg gtcttgcgcc gctcatcgac ggtgtgcacc agaacgggaa
     2161 ggaccggtag gcgttcgcgg gtgcgggcat ccatgcggga tttgcggtgc cgtgcggctt
     2221 tgcgctggtt gatctcctcc tcgccgacag gacaaggtgc gacccacctg ccccagcggc
     2281 cggggtcctc gatcgcccag tgggccagat ccaggtagaa ggcccggacc ggggtcaggc
     2341 attgacggta gccgatccgc tcgacggtga tgacggtctt ctcacccgtg tcggtgacga
     2401 ccgtcttcgg tctgctacgc aggcgctgct tccatgcctg ggcgacctcg gtgggcagat
     2461 gaaggctctc gataccgggg tggtggcgtt ccaggtcttt ccagaacaca ttccccagat
     2521 cagcggcgag ggagcgcaga ctgctgtagt ccagcgccgg ctgacgttcc cgcaggtagt
     2581 ccaccagcag gtcgcggacg ggacggcagg aaaggtggta tcggtcgatc agctcctctg
     2641 gagtgcgttg gcgcgtggac cgaagctccc gcagccgatg cggcgccgaa ggaccgaaga
     2701 cccccatctg gtgcagcatc cgataaaacg cggtgccgtg caccatcggg ctgctatgcg
     2761 tgttcgcctc ggcgtcgagc agttccaggg cgtcgccgat ggtgatatcc gcaatcgcgc
     2821 cgcctttggc ggcgatgatg acggcggcgc gatgcacgat atgtccctgg gctgcggcgg
     2881 aagcgtgggg atcgtggtcg cacagttccc gcagccgcgc gaatccctca acatcacgga
     2941 tacgggccat gcatcgagca agggcaccgc cccgggtcac ggaggctacg aaccagggca
     3001 gggaaggacg cacgatgtcg gcgcagatcg ccaccgtcag cgccgcgcac aatagtgcgt
     3061 tccgtccctc ggagtagagg ctgcggtcat gcagccactg ggccggaacc tgccgccaat
     3121 ccgccccagc ggggtcggcc ccactggccc gccaccgctg ctgccaactc tcgcccggct
     3181 ggtcggccag ccagtccagc agcagttcca ctccccggcg gcgctgtttc tggctcccgg
     3241 cgctgtccag tacgaacggt gggcaggtca gccgcccgaa cacctcgcgg tggctctgcc
     3301 tggtgaccgg ccagtccgcc gccggccgac gggcagggaa ccggtcacct actacctcat
     3361 gccccactgc cagcaacgcc gagacgacga ctggctcttg gaaaccagtg gtcattacgc
     3421 cttgttccag aacagcacat ccagcgtctc gggtcggtag ccgggcgccg gagccgggcg
     3481 cgcccgctcg gccgcttgcc gggtcgcctc ggcatgatgg gccagtaccc gacggaccac
     3541 gtcctctttg cgcggcgtca aatagagctg agtcgtggtc agctgagaat gtccgagcac
     3601 aagctgtacg tcggtgagcg gcagcgccgg gtcctcggcc atccgatagg ccgcagtgtg
     3661 ccgcaacgaa tgcaacgtcg ccgcagtacc cgctcggtcg ttcgcccgct cgaacatgcg
     3721 gtgcaccgcg tgataggtca acggcctggc cgggcgacgg agtgtccacc acagtggctg
     3781 cctgcgcccg ttgggaatca actcctccat ctccacctgg tagagccgca accatacgaa
     3841 ggcgtccgtg gaggccggca actgctgcag ctcacgggtg cccttacgca ccaccgtgat
     3901 cagctgccgt cccgaatcaa caccacccaa cgtgaccgac aacagttcgg acgcccgtgc
     3961 cccggtggac acatagaagg cgaccagtgc ccggtcccgg tgcgagggaa gccgggcgaa
     4021 gatctcgttg aactcctcgt ccggcacgct gcgtgggatt cgggtcggca ccgtcggtcg
     4081 ataccgccca ctgcgttcgt tgcgatatgg ctccatcgga ttgtggtgcg cgtgcgctcg
     4141 gccgccccgt cgagaccgat ccagcggaaa cgggttgatg atcggacccg tgcccacgtc
     4201 ccggtgaaag ccatagaaag cccgcagcac cgtctcgcag tgcgctcgca ccgacggcgc
     4261 atacgcctca cccaccgggg tggtgtccaa ggcgtcgacc acggtctcgc cccgcttgcg
     4321 ccagtgcggc ctggatcgct ttccggcaac ctgcatccac ctgctgaagt cccgagcctc
     4381 gatgcgggtc acccgatccc acgccacacc ctcggctgcc cagacaaacc ggaaccagcg
     4441 cagcaggtcc atcccgtaag agcggaccgt ggactccgac cgccccgccg ccagaagatc
     4501 ccggaagaag gcagtgactc catccacagc cgcaccgttc gcatcgacca accggtaagg
     4561 ctcataacgc tctccggtcg cgaccagccg gccgacttga ggcaccacca actccgccag
     4621 atccctggac agcgcatcct ctccaatcat ggcgcgagac catctcacac agatcgcgat
     4681 ctatccactg aactgcggaa actatcaccg tagttcagtc aacaggcaac ctcgcactca
     4741 gcctgctacg cctggccgga atcacccaaa tcaaacgcac cctcgaacgg atagccgctg
     4801 accgaacccg aatcctccca ctcatcacag ccgctaccag cacaaaccga ctttgacgtt
     4861 ctcctggcgt gtcggctgat gatatgtata tcgttcaacg cgcgacgtgc gacgtctacc
     4921 tcggccgggg cgcgcaggtc gtgccagtat tggagcctcg cctcatgccg ctggttaggt
     4981 catctctgcg gacggccacc atcacccgcg ccaagcttgc ccgggcttac gccaatgccg
     5041 gccagcccgg agaagcatgc cgagtggcct gggaaacgct cgacgtcatt gagca
//
LOCUS       DASVXZ010000078         2742 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1174129, whole genome shotgun sequence.
ACCESSION   DASVXZ010000078 DASVXZ010000000
VERSION     DASVXZ010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1174129"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VF788_01435"
     CDS             complement(<1..764)
                     /locus_tag="VF788_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8932865.1"
                     /translation="MTQQPILSVRHLVKHFPVRGRGLARRQGWRGRQSDRGGDVHAVC
                     DVSFDLYPGDTLGLVGESGCGKSTTARVLLNLQPATAGEVRYQDSDLTRLPRKAMRRL
                     RRELQIVFQDPYAALDPRLPVNEIIAEPLRIHGLYDVSGRDNVKELLNLVGLKPEHGN
                     RYPHEFSGGQRQRIGIARALALRPKVLVLDEPVSALDVSIQAGVLNLLADLQVKLGLS
                     YLFVSHDLSVVRHVADRIAVMYLGRIVETASADELF"
     gene            complement(761..1795)
                     /locus_tag="VF788_01440"
     CDS             complement(761..1795)
                     /locus_tag="VF788_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8932866.1"
                     /translation="MKATGDAVLDVVDLQVEFRTDEGHVQAVRGVSYQLRRGEVLGIV
                     GESGSGKSVTSLAVMGLLPGSARVAGSVRFSGTELLGAPDSQLRRVRGQGISMIFQDP
                     MTSLNPVYTVGYQIAEAIRAHHHLTRNAAREKAVELLGRVSIPDPTQRVDNYPHELSG
                     GMRQRVVIAIAMANHPEVIIADEPTTALDVTVQAQVLETLRTAKLQTGAAMVLITHDL
                     GVIAGQADRVLVMYAGRIVEAGTVEEIFYAPRMPYTLGLLGSQPRLDLRRQRLYPISG
                     APPSAINMAPGCSFAPRCPLAAPVCQIEEPPLAVTSTSGHLSACHFSEKLDGLKPGEV
                     FRPLSQDSRS"
     gene            complement(1845..2723)
                     /locus_tag="VF788_01445"
     CDS             complement(1845..2723)
                     /locus_tag="VF788_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932867.1"
                     /translation="MLHEPGVTVAQRSQAQLVARRFRQHRLAVVSLITLTALVLLAFV
                     GGWLWHYSVADLTSDESVPPSWDHPFGTDAVGHDTFAQVLRGTQISIGISVLVAVFAT
                     VVGTIWGATAGYYRGRLDTVMMRIADLVLTLPLLAVAAVLGHNLGGSWWLIAIVIAGL
                     YWAYVARVARGVVLSLREKEFVEAARALGASDARIIFRHLLPNAFGSIIVNATVLVSL
                     AILLETALSYLGFGVRPPDTSLGLLVSDAQTAMDTRPWLFYFPGLFIILIALTINFIG
                     DGLRDALDPQQVKVRR"
BASE COUNT          497 a          924 c          907 g          414 t
ORIGIN      
        1 ctgaacagct cgtcggcgct ggcggtctcc acgatgcggc ccaggtacat cactgcgatc
       61 cggtccgcga cgtgccgcac caccgacaga tcgtgggaca cgaacagata cgacaggccc
      121 agtttcacct gcaagtccgc gagcaggttg agcacgcctg cctggatgga gacatccagc
      181 gcggacaccg gctcatccag caccaggacc ttcggacgta gtgcgagcgc ccgggcgatg
      241 ccgatccgct gccgttgtcc cccggagaac tcgtgcgggt accggttgcc gtgctcgggc
      301 ttgagcccga ccaggttgag cagctccttg acgttgtcgc ggccggagac gtcgtaaagg
      361 ccgtggatgc gcaacggctc tgcgatgatc tcgttcaccg gcagccgcgg atcgagcgcc
      421 gcgtaggggt cctggaagac gatctgcagc tcgcgccgga ggcggcgcat ggccttgcgg
      481 ggcagccgag tcagatcgct gtcctggtag cggacctctc ccgccgtcgc cggctgcagg
      541 ttgagcagca ctcgcgcggt ggtggacttg ccacaacccg actcccccac cagcccaagg
      601 gtgtcccccg ggtagaggtc gaatgacacg tcacagacgg cgtgcacgtc gccaccgcgg
      661 tccgattgcc ggccccgcca gccctggcgg cgagccaggc cgcggccacg caccggaaaa
      721 tgcttgacta gatggcgcac ggacaggatc ggctgctgcg tcatgatcgg ctgtcctggg
      781 acaatggccg gaacacctca ccgggtttca acccatccag cttctcactg aagtggcagg
      841 cggacaggtg cccgctggta ctggttaccg cgagcggggg ctcctcgatc tggcacaccg
      901 gcgccgcaag tgggcagcgg ggggcgaacg agcagcccgg cgccatgttg atcgccgagg
      961 ggggcgcccc gctgatcggg tacagccgtt gcctgcgcag atcgagccgg ggctggctac
     1021 ccagcaggcc caacgtgtag ggcattcgcg gcgcgtagaa aatctcctcg acagtaccgg
     1081 cttcgacaat tcggccggca tacatcacca gcacgcggtc cgcctgcccg gcgatcacgc
     1141 ccagatcatg ggtgatgagc accatggccg ctccggtctg cagctttgcg gtacgcaacg
     1201 tttccaggac ctgtgcttgg acggtcacat ccagtgcggt ggtcggctca tccgcgatga
     1261 tcacctcggg atggttggcc atcgcgatgg cgatcactac ccgctggcgc atcccgccgg
     1321 atagctcatg cgggtagttg tccacccgct gggtcgggtc cgggatgctg acccgtccga
     1381 gcagctccac cgccttctcg cgggccgcgt tccgggtgag gtggtggtgg gcgcggatcg
     1441 cctcggcgat ctggtaaccg acggtgtaga ccggattgag cgaggtcatc gggtcctgga
     1501 agatcatcga tatgccctgg ccacgcaccc ggcgcagttg ggagtctgga gccccgagca
     1561 attccgtgcc ggagaaacgg accgacccgg ctacccgggc cgacccgggt agcaaaccca
     1621 tcacggcaag ggaggtcacc gacttgccgg agcccgactc cccgacgatg ccgagcacct
     1681 cgccgcggcg tagctggtag ctcactccgc gcacggcctg cacgtgaccc tcgtcggtgc
     1741 ggaactccac ctgcaggtcc accacatcaa gcacggcgtc accggtcgcc ttcacgatga
     1801 gcaccacagc ccgacacacc gtgcaccacg acgcgacacg ccggtcatcg gcgaaccttt
     1861 acctgctggg gatctagggc gtcgcgcagg ccgtcaccga tgaagttgat cgtcagcgcg
     1921 atcaggatga tgaacaggcc cgggaagtag aacagccagg gccgggtgtc catcgccgtc
     1981 tgcgcgtcgc tgaccagcag cccgagcgag gtatccgggg gacgcacccc gaagcctagg
     2041 taggacaggg ccgtttccag caggatggct agcgacacca gcacggtggc gttcacgatg
     2101 atcgaaccga acgcgttggg cagcagatgc cggaagatga tccgggcatc gctcgcacct
     2161 agcgctctgg cggcctcgac gaactccttc tcccgcagtg aaagcaccac accgcgagcg
     2221 accctggcga cataggccca gtacaggccg gcgatcacga tggcgatcag ccaccagcta
     2281 cctccgaggt tgtgccccag cacggcagcg accgcgagca gcggcagggt gagcaccaga
     2341 tcggcgatcc gcatcatcac ggtgtcgagt cttccccggt agtaacccgc ggtggcgccc
     2401 cagatggttc cgaccacggt ggcgaagacc gcgaccagga ccgagatccc gatcgagatc
     2461 tgcgtaccgc ggagcacctg ggcaaacgtg tcatgcccga ctgcatcggt gccgaaggga
     2521 tggtcccacg acgggggtac cgactcgtca gaggtgagat ccgctacgga gtagtgccac
     2581 aaccagccgc cgacgaaggc cagcaacacc agcgcggtca gcgttatcag gctgaccaca
     2641 gcgagcctgt gctgccggaa acggcgcgcc accagctggg cctggctgcg ctgcgcgacg
     2701 gttacccccg gctcgtgcag cagcggctca tgaggcggcg gc
//
LOCUS       DASVXZ010000079         2622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_277701, whole genome shotgun sequence.
ACCESSION   DASVXZ010000079 DASVXZ010000000
VERSION     DASVXZ010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277701"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VF788_01450"
     CDS             complement(<1..246)
                     /locus_tag="VF788_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEX8932868.1"
                     /translation="MAAVVWLIAGFALIAAEVLSGGFVLIMLGVGALGAAGFAALGAP
                     IWLDVAVFAATSVALITLARPVLKRRLFTAHVPTNIDA"
     gene            complement(292..1164)
                     /locus_tag="VF788_01455"
     CDS             complement(292..1164)
                     /locus_tag="VF788_01455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020659460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3097 domain-containing protein"
                     /protein_id="HEX8932869.1"
                     /translation="MIPRNLQGSPSCGAGYGLDTFPPHRARKVPQMVAEPGLVVADAA
                     SGFCGAVLRCERDTVLLEDRKGRVRTFPLRRAAFLVDGAPVTLLRPAEQATVGVSKSA
                     SGSVRAVVKRARVARASRIWVEGKHDAELVERVWGHDLRVAGVVVDPLDGVDQLAERV
                     AEFGPASHRRLGVLVDHLVAGSKESRLVQALRSADVLVTGHPYVDIWQAVRPSALGIP
                     AWPEVPRGLPWKEGVCHALGWVDRRGVADPVQAWRRVLDSVRNFRDLEPALLGAVEAL
                     IDFVTTEEQESPTS"
     gene            1277..2071
                     /locus_tag="VF788_01460"
     CDS             1277..2071
                     /locus_tag="VF788_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932870.1"
                     /translation="MPCPSATLTVWASAWLHGCAAPDAVIDGLHTWAGLHEVVAVDET
                     TARQLDLPAPDEVPTSVVGLLAAARRAGAGVGQLLLPVPGDVRGLPPDGPLAAAAMDS
                     GEAAVFTGAELAAVPNAVADGVLRWTVFADGPLPPAPEPALADAEHGLRGAVRQAATT
                     LVELGVARHRPGVRAEIAEALEHRIRPPWPEGTPARALRVLEQADEVEAILRAADTDN
                     LGGAVSASVAAARFVVLRPLFTAVREARRSAVAEAVRALTPRAGRR"
     gene            complement(2188..>2622)
                     /locus_tag="VF788_01465"
     CDS             complement(2188..>2622)
                     /locus_tag="VF788_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007035358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEX8932871.1"
                     /translation="SRQVAEAARLVAAAAEIPSYDVIWQSRSGPPHVPWLAPDVIDHL
                     DALHAQRVPGVVVAPIGFVSDHLEVVWDLDHEAWQRATTLGMSFVRAATPGTDPRFAE
                     MVVELIAEHVGNAPARRCSQIPAAGQGVNGAPCAPDCCEPAQ"
BASE COUNT          422 a          939 c          867 g          394 t
ORIGIN      
        1 cgcgtcgatg ttagtcggca cgtgggcggt gaataggcgg cgcttgagca ccggtcgggc
       61 cagcgtgatc aaagccacgg aggtggccgc gaaaaccgcc acgtccagcc agatcggcgc
      121 acccaatgcc gcgaaccccg cagcccccag cgcgcccacc ccgagcatga tcagcacaaa
      181 gccgcccgac agcacctccg cagcgatcag cgcaaacccg gcaatgagcc acacaacagc
      241 ggccatgtga ccagtttgac agatcttcga ccaggatact gcgagtgatc gtcacgaggt
      301 cggcgattcc tgttcttccg tggtgacgaa gtcgatgagt gcctccaccg cacccaggag
      361 ggccggttca agatcgcgaa agtttctcac cgagtccagc acccggcgcc aagcctgcac
      421 cggatcggcg accccacgtc gatccaccca tccgagggcg tggcacacgc cttccttcca
      481 cggcagccca cgcggcacct ccggccaagc tgggataccc aaagcgctgg gccgcacagc
      541 ctgccagata tcgacatagg gatggccggt caccagtacg tccgccgaac gcagtgcctg
      601 cacgaggcgg ctctccttgc taccggcgac cagatgatcg accaacacgc cgagtcgccg
      661 gtgtgacgcg ggcccgaact cggcgacccg ctcggcgagc tgatctacac cgtcgagcgg
      721 atccacgact actccggcca cccgcagatc atgaccccac acccgttcca cgagctccgc
      781 atcgtgcttg ccctccaccc aaatccgact tgcgcgcgcg acccgggccc gctttaccac
      841 tgcgcggacc gaaccggacg ccgatttgct cactccaacg gtggcctgct cggctgggcg
      901 gagcagcgtg accggagcgc cgtcgaccag aaaggctgcg cgcctcagtg ggaaggtccg
      961 aacccgcccc ttgcggtcct ccagaagcac cgtgtcgcgt tcgcagcgta ggaccgcgcc
     1021 gcagaatcca ctggcggcgt ccgctaccac cagccctggc tcggccacca tctgcggcac
     1081 cttccgggcc cggtgcggcg ggaatgtgtc cagcccgtat cccgctccgc aactcggcga
     1141 gccctgcagg ttccgtggga tcatggtgtc gacgctaacc ggacgcccca gtggggatgg
     1201 cgcagccacg ccgcatgcat cttgcggatc cggtccgatc accggcacag ccggcggtgt
     1261 cctacgcttc tactccgtgc catgccccag cgcgacattg accgtatggg cctctgcttg
     1321 gctgcacggt tgcgccgccc ctgacgctgt gatcgacggc ctgcatacct gggcaggcct
     1381 gcacgaggtc gtggccgtcg acgagaccac cgcacggcag ctcgacctgc ccgcgccgga
     1441 cgaggttcca acttctgtgg tcggcttgct ggccgcggcc cggcgagccg gagcgggggt
     1501 cggccagctt ttgctgccgg tgcccggtga cgtgcggggt ctgccgcccg acggaccgct
     1561 cgccgcggcc gcaatggaca gcggcgaggc cgcagtgttc accggtgcgg aactggcggc
     1621 ggtgccgaat gcagtcgccg atggtgtgct tcgctggacc gtatttgctg atggcccgct
     1681 gcccccggcc ccggaacctg ccctggccga cgccgagcat ggtctgcgag gcgcggttcg
     1741 ccaggcggcg accacgctgg tggagctcgg cgtcgcccgg caccggccag gcgttcgcgc
     1801 cgagatcgcc gaagcccttg agcaccggat ccggccgccg tggcccgagg gcacccctgc
     1861 ccgcgcgctg cgggtgcttg agcaagccga tgaggtcgag gccatcctcc gtgctgctga
     1921 caccgacaac ctcgggggtg cggtatccgc atcggtcgcg gctgcccgct ttgtggtgtt
     1981 gcgaccgctg ttcaccgcgg tgcgcgaggc gcggcgctcg gcggtcgctg aggcggtacg
     2041 ggcgctgact ccgcgtgctg ggcgacgttg accgtgctcg ggccaatgag agaaagcctg
     2101 tttcacctcc gcctgtgagg cgcgggcccg tcatgccgcg tgaccccctt gcacaaaacc
     2161 aggctcagca tccgaggagc tgagacccta ttgcgcaggt tcacaacagt ccggggcgca
     2221 gggggcgccg ttgacgcctt ggccggccgc cgggatctgt gagcaccggc gggcaggggc
     2281 attccccacg tgctctgcga tgagctccac caccatctcg gcgaaacgcg gatcggtgcc
     2341 cggggtggcg gctcggacga aactcatgcc cagcgtggta gcccgctgcc aggcttcgtg
     2401 atcgaggtcc cacaccacct cgaggtggtc ggagacaaag ccgatcggcg caaccacgac
     2461 cccaggtact cgctgggcgt gcagcgcgtc gaggtggtcg atcacgtccg gcgccagcca
     2521 tggcacgtga gggggcccag agcgggactg ccatatgacg tcatagctgg gtatctcggc
     2581 tgccgcggcg acaagccggg cggcctcggc gacttgccgg ga
//
LOCUS       DASVXZ010000080         8330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_815653, whole genome shotgun sequence.
ACCESSION   DASVXZ010000080 DASVXZ010000000
VERSION     DASVXZ010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8330
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_815653"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..285)
                     /locus_tag="VF788_01470"
     CDS             complement(118..285)
                     /locus_tag="VF788_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003966491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3117 domain-containing protein"
                     /protein_id="HEX8932872.1"
                     /translation="MAAMKPRTGDGPLEVTKEGRGIVMRVPLEGGGRLVVEMSANEAG
                     ELGEALRAVVE"
     gene            complement(452..1039)
                     /locus_tag="VF788_01475"
     CDS             complement(452..1039)
                     /locus_tag="VF788_01475"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005451097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEX8932873.1"
                     /translation="MSPGIGPAAGLDGRLRCPWAGAAADYCDYHDNEWGIPVHGEDAL
                     FERLSLEAFQSGLSWLTILRKRDAFRRAFAGFRPAAVAAFTGDDIARLLTDAHIVRNR
                     AKIEATVRNARAITELGEDLDTLLWSYAPDPARRAAPRTTSEVPTRTAESEAMAGALR
                     RRGFTFVGPVTCHALMQATGMVDDHLAGCFRRTVG"
     gene            complement(1053..1508)
                     /locus_tag="VF788_01480"
     CDS             complement(1053..1508)
                     /locus_tag="VF788_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8932874.1"
                     /translation="MNHTVRINAEIDVNAPPDAVFAAATDWDRQGEWMLGTTVRVRRG
                     DGHSVGSELEAVTGIAGIGVADRMQITVWDAPSRCEMRHLGKVVRGIGIFTVRPRGRD
                     AATFEWIEQLELPLGMLGRVGWSLVSPVFGWGLRFSLDRFAAFCRTHPG"
     gene            complement(1505..1795)
                     /locus_tag="VF788_01485"
     CDS             complement(1505..1795)
                     /locus_tag="VF788_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8932875.1"
                     /translation="MGTVLVYLVVAVVVAAVVFLAASLVFGRGEELAALPPDATPTGL
                     PEGPIVGEDVRAVRFSQVLRGYRMSEVDWTLQRAAAELDALHARVAELEGQR"
     gene            complement(1843..2799)
                     /locus_tag="VF788_01490"
     CDS             complement(1843..2799)
                     /locus_tag="VF788_01490"
                     /EC_number="2.4.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosyl-3-phosphoglycerate synthase"
                     /protein_id="HEX8932876.1"
                     /translation="MVLLPQTRRWFSESTVQSVPWTFEQLLAAKRGRSVSVVLPTLNE
                     QATVGALVSVLRPLLGGLIDELVVMDSGCTDRSAEVAREAGARVVQRADVLPELPPWP
                     GKGEVLWRSLAATSGDVLVFIDSDLVDFDPGFVPALLGPLLLWERRRAQQVQLVKGFY
                     QRPLRIESTTAGTGGGRVTELLARPLLNALRPELAGVVQPLGGEYAGTRAFLESVPFA
                     AGYGVEIGLLLDVHTHHGLDGLAQVNLGVRKHRNRSLLELGVMSRQILGAALPRCGVA
                     EASGSAGIAQFVQLGDRFIPTESEVLVAERPPMREVLAARSA"
     gene            complement(2805..3695)
                     /gene="folP"
                     /locus_tag="VF788_01495"
     CDS             complement(2805..3695)
                     /gene="folP"
                     /locus_tag="VF788_01495"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX8932877.1"
                     /translation="MISAAGRPVPTVRFGTRSLPVDRASVMAIVNRTPDSFYDRGATF
                     SDQAAMAAVDCALAEGADIVDIGGVKAGPGEDVGVTEETRRVVPFVAAVRQRHPNLLI
                     SVDTWRHEVARAALEAGADIINDSWAGVDPKLSEVAAEYACGVVCSHTGGAPPRTRPH
                     RVRYTDVVREVIEDLTAQAVRLVQLGVPREAILIDPTHDFGKNTWHGLELLRRADELV
                     DTGWPVLMALSNKDFIGETLDAGVDDRVDGTLAATAIAAWARVRVFRAHQVRQTRRVL
                     EMVASIAGTRPPARAVRGLA"
     gene            complement(3712..4485)
                     /locus_tag="VF788_01500"
     CDS             complement(3712..4485)
                     /locus_tag="VF788_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEX8932878.1"
                     /translation="MSSRNGKDEEHPREKQRGPVVLRRERRYEPTTTDQRLLDSRGPS
                     DWVHTDPWRVLRIQSEFVEGFGALAELPHAVTVFGSARTPRDHPEYATGRALGEALAD
                     AGFAVITGGGPGTMEAVNRGASEAGGLSVGLGIELPFEEGLNPWVDLGINFRYFFTRK
                     TMFIKYAQSFVCLPGGFGTLDELFEALTLVQNKKVTKFPVVLLGRDYWGGLYSWLVDT
                     VAAQGKLRESELALLHVTDEIDEVVRLVGESYQAWQDTH"
     gene            complement(4537..5658)
                     /gene="dapE"
                     /locus_tag="VF788_01505"
     CDS             complement(4537..5658)
                     /gene="dapE"
                     /locus_tag="VF788_01505"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005451093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEX8932879.1"
                     /translation="MRGESCSGDTVGLVELDLRANPVELTAALVNVPSVSGDEVVLAN
                     AVQAALAAQAPHLRLLRCGNTVLGRTELGRAQRVLLAGHLDTVPIAENVPSRLCDDLL
                     YGCGSSDMKSGDAMILHLAATVPEPVCDLTVVLYDCEEIEAARNGLGQIEREQRTWLT
                     AELAILAEPTNGLVEAGCQGSLRATVRTAGRRAHSARSWLGDNAIHAAGAVLDRLACY
                     RPRSVEIDGCTYREGLQAVGISGGVAGNIVPDACEVQVNFRFAPDRSLADAQRHVREA
                     LDGFELEFTDGACGALPGLDAPAAREFVAAIGAAPVAKYGWTDVSRFAALGIPALNYG
                     PGDPNLAHTRDEHVRTDHIIACTEALRRYLSGAARPVSA"
     gene            5722..6693
                     /gene="dapD"
                     /locus_tag="VF788_01510"
     CDS             5722..6693
                     /gene="dapD"
                     /locus_tag="VF788_01510"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HEX8932880.1"
                     /translation="MNHAQIDAAHGLGLATLTFTGAVLDTWFPHPTPGLPHDQITGTE
                     RVSPDDVGAEFAALLGPDPARGVELVAVRTTIADLQAAPIDAHDVYLRLHLLSHRLVT
                     PRSINLDGIFGLLSNVVWTNFGPCPVPEFEATRMRMRQLGPVTVYGVDKFPRMVDYVV
                     PSGVRIGDADRVRLGAHLASGTTVMHEGFVNFNAGTLGTSMVEGRISAGVVVGTDSDL
                     GGGASIIGTLSGGGKELISVGRRCLVGANAGIGISLGDDCVVEAGLYVTAGTKVALPD
                     GKVVKARELSGVEGVLFRRNSVTGAVQAVHRAGRAGIELNPLLHSND"
     gene            6732..7715
                     /locus_tag="VF788_01515"
     CDS             6732..7715
                     /locus_tag="VF788_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEX8932881.1"
                     /translation="MSSATRGQHLSPRRTARAGKLVKLGDPVTCRPSDPTAHQLRAAL
                     DTRLRALLAHDPGTRVGEDPEELHQMRVAVRRIRAMLKAARPLLDRTWADDLRAELGW
                     LGRALGPVRDADVLIERLRRRAATFDNTGREAVETLIEALVTDRRLARTQMLAVLGSR
                     RYTALLRRLVSAVGRPLPTPSGRDGAPPLVKLVHAEYRRLSKAVRAAGEDPPDEVLHA
                     LRIQGKRLRYTGELVVASSRKPIRKPVRKLVASTVALQDVLGEHQDACVAQHLVMRLL
                     DGLGDVVDLNVAFAAGRLMEREELSRVASRQSWLAAWQGVQRHAHSLESAA"
     gene            complement(7745..>8330)
                     /locus_tag="VF788_01520"
     CDS             complement(7745..>8330)
                     /locus_tag="VF788_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8932882.1"
                     /translation="RQIGAVVASDECYLSLGWEAMPMSVLHPQICGGDHRGLLAVHSL
                     SKSSNLAGYRAGFVAGDPGLIAALLEVRKHAGMMVPRPVQQAMVAALSDDEHLEQQRH
                     RYARRRERLRPALDRAGLHVRRSEGGLFLWCTAGEPCWDTVNRLAEHGVLVAPGVFYG
                     SAGGRHVRVGLTATDPSIAAAIDRLGCCTTAPAR"
BASE COUNT         1362 a         2962 c         2767 g         1239 t
ORIGIN      
        1 gtgggcacag tcagggtcac gggcactggg tgtctccggg tgatttcgtg gcgaggcccc
       61 ggtgcgcctg cagacgccga ccgaggccac gaaacgaggg acgccaaggg cggaccgtca
      121 ctccacgacg gcccgcaatg cctcgccaag ctcgcccgcc tcgttcgccg acatctcgac
      181 gacgagccgc ccaccgccct ccagcggcac tcgcatcacg atgccccgtc cctccttcgt
      241 cacttcgagg ggaccgtcgc cggtccgggg cttcatggcc gccatagcgt gctccctccg
      301 tgcatttgtc accgcgggtg tggccacgcg acaccggtga ccccctgcat tctcccctat
      361 cggtctcagc ccccgacacg caaccgatca tctcgcattt gccacccctt gaatcgtcca
      421 cctaggaccg cgtgagcacc ggtgcggtgg ctcatccgac ggtgcggcgg aagcagccag
      481 caaggtggtc atcgaccatc ccggtggcct gcatgagcgc atggcaggtg acaggaccga
      541 caaaggtgaa tcctcgccgg cgcagcgcgc cagccatcgc ctcggattca gcggtccggg
      601 ttggtacctc cgacgtcgtc cgcggcgcgg cgcggcgagc gggatcgggc gcgtaggacc
      661 acagcagggt gtccagatcc tcacccagct cggtgatcgc tcgggcgttg cgcactgtcg
      721 cctcgatctt ggcgcggttg cggacgatgt gcgcgtcggt gagcaggcgg gctatgtcgt
      781 cgccggtgaa agcggcgacc gcagctgggc ggaagccggc gaacgcccga cggaaggcat
      841 ctcgcttgcg caggatcgtc agccaggaca gacccgactg gaacgcctcc aggctgagcc
      901 gctcgaacag ggcatcctca ccatggaccg gtattcccca ctcgttgtcg tggtagtcgc
      961 aatagtctgc ggccgcccct gcccacgggc aacgcagtcg gccgtccaga ccggctgctg
     1021 gaccgatgcc gggactcatc tgcgttccat tttcatccgg gatgggtccg gcagaaggcg
     1081 gcgaagcgat cgagggagaa ccgtaggccc cagccgaaga ccgggctgac cagcgaccag
     1141 cccaccctgc ccagcatccc tagcggcaac tccagttgct cgatccactc gaaggtggcg
     1201 gcgtcccggc cgcggggccg caccgtgaag atcccgatac ctcgcaccac cttgccgaga
     1261 tgtcgcatct cgcatcgcga tggggcgtcc cacaccgtga tctgcatgcg gtcagcgacc
     1321 ccgattccgg ctatcccggt gacggcctcc agctcagaac cgacggagtg accgtcgccg
     1381 cggcggaccc ggacggtggt gccgagcatc cattcgcctt ggcggtccca atcagtggcg
     1441 gcggcaaaca ccgcatctgg cggcgcgttc acgtcgatct cggcgttgat ccgcaccgtg
     1501 tggttcatcg ctgcccctcc aactcggcca cccgggcgtg tagcgcatcg agctcagccg
     1561 cggcccgctg cagggtccag tccacctcgg acatccggta accacggagt acctgcgaga
     1621 accggacggc gcgcacgtcc tcgccgacga tcggtccctc gggcaggccg gtcggggtgg
     1681 cgtccggcgg cagggcggcc aactcctcgc cccgaccgaa gaccagcgaa gcggccagaa
     1741 acaccaccgc agccaccacc actgccacga cgaggtagac cagcaccgtt cccacatccc
     1801 cgatcgtggc agctggcggc aactcatgga tggccaaccc cctcaggcag agcgggcggc
     1861 gagcacctcg cgcatcggtg ggcgctcagc gaccaggacc tcgctctcgg tgggtatgaa
     1921 gcggtccccg agttgaacga actgggcgat gcccgccgaa cctgacgcct cagcgacccc
     1981 gcagcgaggc agggcggcgc cgaggatctg ccgggacatc acgccgagtt cgagcaggga
     2041 gcggttccgg tgtttgcgca ctcccagatt gacctgggcc aggccgtcca gcccgtggtg
     2101 ggtgtgcacg tcgagcagta gcccgatctc cacgccgtac ccggcggcga agggaaccga
     2161 ctccagaaac gcgcgagtcc ccgcgtactc gccgcccagc ggctggacca ccccagccag
     2221 ttcggggcgc agcgcattga gcaacggcct ggccaacagc tcggtgacgc gaccgccacc
     2281 agtgcccgcc gtggtgctct caatccgcag cggccgctgg tagaagccct tgaccagctg
     2341 gacctgttgc gccctccggc gctcccagag cagcagcggc cccagtagcg cgggcacaaa
     2401 ccccggatcg aaatcgacca ggtcggagtc gatgaagacc agcacgtcac ccgaggtggc
     2461 cgccagggaa cgccagagca cctccccctt tcccggccac ggtggcagct cgggaagcac
     2521 atcggcacgc tgcaccacgc gggcgccggc ctcgcgggct acctcggcgc tccggtcggt
     2581 acaacccgaa tccatcacca ccagctcatc gatcaacccg ccgagcaacg gtcgcagcac
     2641 gctgaccagc gcacccaccg tcgcctgttc attcagcgtg ggcagcacca cgctgacact
     2701 ccggccccgc ttggccgcga ggagctgctc gaaggtccac ggcacgctct gcacggtgga
     2761 ctcgctgaac caccgccggg tctggggcag cagaaccagg ccggtcaagc caggccccgg
     2821 acagcgcgag ccggcggtcg ggttccggcg atcgaggcca ccatctccag cacgcgacgg
     2881 gtttgccgca cctggtgggc ccggaagacc cggactctgg cccaggcggc gatcgcggtg
     2941 gccgccagag tgccatcaac gcgatcgtcc accccggcgt cgagggtctc cccgatgaag
     3001 tccttgttgg acagcgccat gagcaccggc caaccggtat cgaccagttc gtcggcacgg
     3061 cgcagcagct ccaacccgtg ccaggtgttc ttaccgaagt cgtgggtggg gtcgatgagg
     3121 atcgcctccc tgggcacccc gagctggacc aggcgcaccg cctgcgccgt gaggtcctcg
     3181 atgacctcgc gcaccacatc ggtgtaacgc acccggtgcg gtcgggtgcg cggcggtgca
     3241 ccaccggtgt gcgagcacac cacgccacac gcgtactcgg cagcgacctc ggagagcttc
     3301 ggatcgacac ccgcccagct gtcgttgatg atgtcagccc ccgcctcgag cgctgcccgg
     3361 gccacttcgt gccgccaggt atcgacgctg atcaaaaggt tgggatggcg ttgccgcacg
     3421 gcggccacga agggcacgac gcggcgggtc tcctcggtca ccccgacgtc ctctcccggg
     3481 ccggccttga ccccaccgat atccacgatg tcggcaccct cggccagggc acagtccacg
     3541 gcggccatcg cggcctggtc tgagaaagtg gcgccacggt cgtagaagga gtcaggggtc
     3601 cggttgacga tggccatcac ggaggcccgg tcaacgggca ggctgcgggt tccgaaacga
     3661 actgtgggca ctggccggcc ggcagcggag atcatccggc gtacccggcg ctcaatgggt
     3721 gtcctgccag gcctgatagg actcgccgac gagccggacc acctcgtcga tctcatcggt
     3781 gacgtgcagc agggcgagct cggactcacg gagcttgccc tgcgcggcga cggtgtcgac
     3841 cagccaggag tacagcccgc cccagtagtc ccgtccaagc aggacgaccg ggaacttggt
     3901 gaccttcttg ttctgcacca gggtgagcgc ctcgaacagt tcgtccaagg tgccgaatcc
     3961 gccgggtagg cagacgaagg actgggcata cttgatgaac atggtcttgc gggtgaagaa
     4021 gtagcggaag ttgattccga ggtcgaccca ggggttgagc ccctcctcga acggcagctc
     4081 gatgcccagc cccaccgaca gcccacccgc ctccgacgcc ccccggttga ccgcctccat
     4141 ggtgccgggg ccaccaccgg tgatcaccgc gaaaccggcg tcggccagcg cctcgccgag
     4201 cgcgcgaccg gtcgcgtact cgggatggtc acgaggggtg cgtgccgagc cgaagacggt
     4261 gaccgcatgg ggtagttcgg cgagcgctcc gaaaccctcg acgaactcgg actggatacg
     4321 cagcactcgc cacgggtcgg tgtgcaccca atcgctggga ccgcgcgagt cgagcagccg
     4381 ctgatcggtg gtggtcggct cgtaacggcg ctcccggcgc agcaccacag gcccccgctg
     4441 cttctcccgc ggatgctcct cgtctttacc gttccgactg ctcatgggcg cagcctacgg
     4501 ctgcgctcgt gagtggcgtt aggtgccaga acaccgttac gcactcacgg ggcgcgctgc
     4561 gccactgagg tagcggcgca gcgcctcggt gcaggcgatg atgtggtcgg tccgcacgtg
     4621 ttcgtcgcgg gtgtgcgcca ggttggggtc gccggggccg taattcaacg ccgggatccc
     4681 cagcgcggcg aagcgggaca catccgtcca gccgtacttc gcgaccgggg cggccccaat
     4741 ggcagccacg aactcccggg ctgccggtgc gtccagcccc ggcagggcgc cgcaagcccc
     4801 gtcggtgaac tcgagctcga agccgtcgag cgcctcgcgg acgtgccgct gggcgtcggc
     4861 gagcgagcgg tccggagcga accggaagtt gacctgcacc tcgcaggcat ccggcacgat
     4921 attgccggcg actccgccgg aaatgcccac cgcctgcaac ccttcccggt aggtgcaccc
     4981 gtcgatctcg acgctgcgcg gccggtagca ggccaacctg tcgagcactg cgccggcagc
     5041 gtggatggcg ttgtcaccca gccaggatcg ggcgctgtgc gcgcgccgcc cagccgtgcg
     5101 cacagtggcc cgcaggctgc cctggcagcc cgcctcgacc aagccgttgg tgggctccgc
     5161 caggatcgcc agctctgcgg tcagccaggt gcgctgctcc cgctcgatct gtcccagccc
     5221 gttgcgggcc gcctcgatct cctcacagtc gtagagcacc accgtcagat cacacaccgg
     5281 ctcgggtacc gtcgccgcaa ggtgcaaaat catcgcgtcg ccggatttca tgtccgagct
     5341 cccgcagccg tagagcaggt cgtcgcagag ccggctgggc acattctcgg cgatcggcac
     5401 ggtgtccaga tgcccggcca acagcactcg ctgcgcgcga cccagctcgg tgcggcccag
     5461 cacggtgttg ccgcagcgca gcagccgcag gtgcggtgcc tgcgctgcca gcgcggcctg
     5521 caccgcattg gccagtacca cctcgtcccc ggacacgctg ggcacgttca ccagcgcggc
     5581 ggtcaactcc accgggttag ccctcagatc cagttccacg agtccgaccg tatcgccaga
     5641 acagctctcg ccgcgcatcc tgcagcgtga gccgggagcc gcgcccccgg tcaggggcgt
     5701 cgggcgttac cgtgaccggt cgtgaaccac gcgcagatcg atgccgcgca cggcctgggg
     5761 ttagccaccc tcacgttcac cggcgcggtg ctggacacct ggttccccca tccgacaccc
     5821 ggcctgccgc acgaccagat caccggcacg gagcgagtat ctccagacga cgtgggtgcg
     5881 gagttcgccg cgctgctggg gccggacccg gcgcggggag tcgagctggt cgcagtgcgc
     5941 accacgatcg ccgacctgca agctgcaccc atcgacgcgc atgacgtcta cctgcgcctg
     6001 cacctgctct cacaccgttt ggtgacgccg cgcagcatca acctcgacgg gattttcgga
     6061 ctgctgtcca atgtggtgtg gacgaacttc gggccatgcc cggtaccgga gttcgaagcc
     6121 acccggatgc ggatgcggca actcgggccg gtcacggtct acggggtgga caaattcccg
     6181 cggatggtcg actacgtggt gccttccggg gtccggatcg gcgacgccga tcgggtgcgg
     6241 ctcggtgccc atctcgcttc cggtaccacg gtgatgcacg aagggttcgt caatttcaac
     6301 gccggcacgc tcgggacctc gatggtggag ggccggatct ccgccggggt cgtggtcggg
     6361 accgactcag atctgggcgg tggcgcgtcg atcatcggga cgctctcggg cggaggcaag
     6421 gagctgatct cggtgggccg gcgctgcctg gtcggcgcca acgccgggat cggcatctcg
     6481 ctgggcgacg actgcgtggt ggaggccggc ctctacgtca ccgcgggcac caaggtcgcc
     6541 ctgcctgatg gcaaggttgt caaagcgcgc gagctctccg gcgtcgaggg agtgctgttc
     6601 cgccggaatt cggtcaccgg tgctgtgcag gcggtgcacc gggcgggtcg ggccggtatc
     6661 gagctcaatc ccctgctgca ctccaacgac tgatggcctc ctcaccagca cggaccacta
     6721 ggatcaagac catgagcagc gccacccgtg gtcagcacct cagcccccgc cgcaccgcgc
     6781 gagcgggcaa actggtcaag ctgggtgatc cggtcacgtg ccggccgtcc gacccgactg
     6841 cgcaccaatt gcgcgctgcg ctggacaccc ggctgcgggc cctgctcgcc cacgaccccg
     6901 gtacccgggt gggcgaagat cccgaagagt tgcaccagat gcgcgttgcg gtgcggcgga
     6961 tacgggccat gctcaaggcg gcccgtccgc tgttggaccg cacctgggcc gatgacctgc
     7021 gtgccgagtt gggttggctg ggccgggcgc tgggaccggt acgggacgcc gacgtgctca
     7081 tcgagcgcct gcgcaggcgt gcagcaacgt tcgacaacac agggcgcgaa gcggtggaaa
     7141 ccctgatcga ggcgctggtc accgaccggc ggttggctcg tacccagatg ctcgccgtgc
     7201 tcggaagccg ccgttacacc gctttactgc gtcggctggt tagcgcggta ggccggccgt
     7261 tacccacccc atccggtcgg gacggcgctc ccccactggt caagctggtc catgccgagt
     7321 accgcaggct gtccaaggct gtgcgtgccg ccggtgaaga ccctcccgac gaggtcctgc
     7381 acgcattgcg gatccagggc aagcggctgc gctacaccgg tgagctggtt gtcgcgtcga
     7441 gccgcaagcc catacgcaag ccggtccgca agctggtggc ctcgacggtg gcgctgcagg
     7501 atgtgctggg cgagcatcag gacgcctgcg tagcgcaaca cctggtgatg cggctgctcg
     7561 acggcctcgg cgacgtcgtc gacctcaacg tggcattcgc cgccgggcgg ctgatggagc
     7621 gcgaggaact cagccgtgtc gcgtcacgcc agtcctggct ggccgcgtgg caaggagtgc
     7681 agcggcacgc ccactcgctg gaaagcgcag cctgaattct tggcttcgag gaacgccgaa
     7741 cgggtcaacg agccggagcc gttgtacagc aacccaggcg gtctatcgcg gcggcgatag
     7801 acgggtctgt agcggtcagg ccgacccgga catggcggcc acctgcggat ccgtagaaca
     7861 caccgggtgc cacgagcaca ccatgctcgg ccagccggtt caccgtgtcc cagcacggct
     7921 cccccgcggt gcaccacagg aagaggccac cctcggaccg tcgcacgtgc agcccggccc
     7981 gatccaacgc cgggcgcagc cgttcgcggc gccgcgcgta ccggtgtcgt tgctgttcca
     8041 ggtgttcgtc atcggataat gcggccacca tggcctgctg caccggccgg ggaaccatca
     8101 tcccggcatg cttgcgcacc tcgagcagcg cggcaatcag ccccggatca ccggccacga
     8161 aaccggcccg gtagccagcc aggttggacg acttggacag tgagtgcact gcgagcaagc
     8221 cgcggtggtc tccaccgcag atctgcgggt gcagcaccga catcggcatc gcttcccagc
     8281 ccagggacag gtagcactcg tccgaggcca ccaccgcccc gatctgtctg
//
LOCUS       DASVXZ010000081         5003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_367567, whole genome shotgun sequence.
ACCESSION   DASVXZ010000081 DASVXZ010000000
VERSION     DASVXZ010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5003
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367567"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1234
                     /locus_tag="VF788_01525"
     CDS             <1..1234
                     /locus_tag="VF788_01525"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HEX8932883.1"
                     /translation="TLGLGRRLTGRSSEEISAELQARTAEQLFAVLGELKGGAMKFGQ
                     ALSVFEAAIPDQLAAPYREALTKLQSAAPPMSPQSVRRVLDEQLGTGWRRRFAYFADE
                     PAAAASIGQVHRAVWHDGREVAVKVQYPGADEALRSDLRQLRRFSRLFQVIVPGMDVK
                     PLLTELQDRMVEELDYRDEADNQRAFAAAFHDHPEIVVPPIVASAPKVMVSQWISGTP
                     MAQIIRSGSRSERDDIGTKLSLFHSSSPTITGLLHADPHPGNFLRLDDGRLGVLDFGA
                     AAKLPGGTPRILGMATRLAVEERSEELLELLRSEGFVRPGMQLSAEDVLAYLSPFAGP
                     VRTETFHFTRAWMQSQAERVGDFSGRDFQIGRALNLPPSYLLIHRVSTGTFGVLCQLD
                     ATVPLREITQRWQPGFAA"
     gene            complement(1364..1741)
                     /locus_tag="VF788_01530"
     CDS             complement(1364..1741)
                     /locus_tag="VF788_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8932884.1"
                     /translation="MLTATVPLDGGALPDLPGGAELAHLLDTAPSGPDTLPCHSHNPD
                     LWFAESPAELEQAKQLCTDCPIKLACLGSALSRQEPWGVWGGEIFEHGAVIPRKRPRG
                     RPSKAALERDRAERERTGQETAA"
     gene            complement(2271..4046)
                     /locus_tag="VF788_01535"
     CDS             complement(2271..4046)
                     /locus_tag="VF788_01535"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020643720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEX8932885.1"
                     /translation="MSVVGQHRGPLEGLDEEQRVAVCAPRGPVCVLAGAGTGKTRTIT
                     RRIAALVRAGHVAPGQVLAVTFTARAAGELRTRLRDLAVAGVQARTFHAAALRQLRYF
                     WPRVVGDELWPLLEHKLRVIGQAAQRAGRGTGAEDLRDFAGEIEWAKANLVTAADYPA
                     AVASARRETPAPAAQVAAIYASYEELKNRNRLLDFDDLLLHTAAALEEHSDVAQEFRD
                     RYRCFVVDEYQDVTPLQQRVLDAWLGGRDDLTVVGDANQTIYSFAGATPRFLLGFTAR
                     FPDAVTVRLHRDYRSTPQVVSLANRVISAARGRPAGSRLSLEGQQPAGPKPTFAEHDD
                     EVSEAAAAAQAIAALLRDGVPAAEIAVLYRVNAQSEAYEQALDALGIPFQVRGGERFF
                     QRPEVRSAVRALRMAATAGIPDPVAELGATVRGVLAGQGLTTEPPGGSAARSRWESLR
                     ALAELADDFAAGPADVDMSQFVAELDARADAAHPPAVQGVTLASLHSAKGLEWDAVFL
                     VGLADGTLPIQYAEGNQAALEEERRLLYVGVTRARHRLALSWALSRSPGGRRSRQRSR
                     FLQGLEHQNRPGANDQRRRAKAGLR"
     gene            4139..4393
                     /locus_tag="VF788_01540"
     CDS             4139..4393
                     /locus_tag="VF788_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mycoredoxin"
                     /protein_id="HEX8932886.1"
                     /translation="MLVPGVSKVTMYSTVWCGYCRRLKAQLDRAGIDFDEVDIEHDAA
                     AASFVAGVNGGNQTVPTVLLPDGSVLTNPTVDQIVAATAA"
     gene            4482..4682
                     /locus_tag="VF788_01545"
     CDS             4482..4682
                     /locus_tag="VF788_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932887.1"
                     /translation="MKIRDRKRWERELNHHMRRHAADLHGQPQKRAEPAGIWMTAPRL
                     ILWTLMVIIVTSAGWAAGLYLF"
     gene            complement(4699..>5003)
                     /locus_tag="VF788_01550"
     CDS             complement(4699..>5003)
                     /locus_tag="VF788_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEX8932888.1"
                     /translation="AVAPPDEAEVDNARHYAIGSLTIATSSQRGLAGHLATLATLGLD
                     LDWLLTHPARLAAVTAAQVAEAATHFFAPSRFTGVVVGDAKRLADPLVALGNVELP"
BASE COUNT          834 a         1683 c         1684 g          802 t
ORIGIN      
        1 cacgctcggc ctcggccggc ggctcaccgg gcgctcgtcg gaggagatca gcgccgagct
       61 ccaggcgcgc accgccgagc agctgttcgc cgtcctcggc gagctcaagg gcggcgcgat
      121 gaaattcggc caagcgctga gcgtattcga ggcggcaatc cccgatcagc tcgccgcacc
      181 gtaccgggag gccctgacca aactgcagtc cgctgcgccg ccgatgtccc cgcagtcggt
      241 gcgccgcgtc ctcgatgagc agctcggcac ggggtggcga cgccgcttcg cgtacttcgc
      301 cgacgagccc gcggcagccg ccagtatcgg ccaggtgcac cgggcggtgt ggcatgacgg
      361 ccgcgaggtc gcggtcaagg tgcagtatcc cggggcggac gaggctctgc gatcggacct
      421 gcgacagctg cggcggttca gccggctctt ccaggtgatc gtgccgggta tggacgtcaa
      481 gccgctgctc accgagctgc aggaccggat ggtggaggag ctcgattacc gcgacgaggc
      541 tgacaaccag cgcgcgttcg ctgcggcgtt tcatgatcac cccgagatcg tcgttccccc
      601 gattgtcgcc agcgcgccaa aggtgatggt gtcgcagtgg atcagcggaa cgccgatggc
      661 gcagatcatc cgcagtggct cgcggtctga acgggacgac atcgggacca agctctccct
      721 tttccactct tcctccccca ccatcaccgg cctgctacac gccgacccgc acccgggaaa
      781 tttcttgcgg ttggacgacg ggcggctggg tgtgctcgac ttcggtgccg cggcgaagct
      841 acccggcggg acaccgcgca tcctcgggat ggcgacgcgg ttggctgtcg aggagcgctc
      901 agaggagctg ctagagttgc tgcgctcgga gggcttcgtc cgtcctggca tgcagttgag
      961 cgcggaggat gtactggcct acctcagtcc gttcgccggt ccggtccgca ccgagacgtt
     1021 ccacttcacc cgggcgtgga tgcaatctca agctgagcgc gtcggtgact tctccggccg
     1081 cgacttccag atcgggcgag cgttgaacct gccgccgagc tacctgctga tccaccgggt
     1141 cagcactggg acgttcggcg tgttgtgcca gctcgacgca accgtgccgt tacgcgaaat
     1201 cacccaacgt tggcaaccgg gtttcgccgc ctgaggtgct gccaggtgcc ctgcccggtc
     1261 agggtgaacg gctggcgggc gtcctgctgc tccccctgtc ctggcgtttg tcgtaaagca
     1321 cgcggagctg gggttggggg cccgcggcgg gcccccaacc tcctcatgcg gcggtttcct
     1381 gtccggtgcg ctcccgctcg gcacgatccc gctcgagggc ggccttgcta ggtcgtcctc
     1441 gcggacgctt gcgcgggatg acagcaccat gctcgaagat ctcgccaccc cacacgcccc
     1501 agggctcttg cctggacagc gcactgccca ggcaggcgag cttgatcggg caatccgtgc
     1561 acaattgctt ggcctgctcc agctcggccg gtgactcagc gaaccagagg tccgggttgt
     1621 gtgagtggca gggcagggtg tccggcccgg acggcgcggt atcgagtagg tgggccagct
     1681 ctgccccacc cggcaggtcg ggcagcgccc cgccgtccag cgggacggtc gcggtcaaca
     1741 cttgtctctc ctcctcggtg gtggtgccga tgaaactcgc cggtaccgac gtgccgcggg
     1801 atgaggacct agcaacacaa caaggccgcg gatcccgctg cggggtccgc ggccttcatg
     1861 agccggatgt tgctggctcg aaaatcaagg ctccgatgcg gacattcgcg tgcggtcggt
     1921 cgtcggcaga tcaatgccag tgaaattgat acggacaggg tggaagggac gctcagtaag
     1981 cagccagcgc gcgccgcaag gcacggtccg caaacgcttg gactgaattc ccccatacac
     2041 agcgtggagt ccgcgcggca ggaagtagcg ggcaccgctg gccgtgttca tcaccatcgg
     2101 gcttctcctt cccacttcag gcccacgctc ggtgtctgga cgatccaccc tggtcagccg
     2161 gatgcaacga ccgcttccag gagttaggag agagattagg gcccggctga tacaccagca
     2221 accgaatttc tgggtttttc ttgctcatat gtcagcgagc ctgctgctcc tcagcgcaac
     2281 cctgccttcg cgcgccgacg ttgatcgttt gcgcccggac gattctggtg ctccaagccc
     2341 tggaggaaac ggctgcgctg ccgggaccgc cgccctccgg gactgcggga caacgcccag
     2401 gacagcgcca gccggtggcg tgcccgagtt accccgacgt acagcaagcg gcgctcctcc
     2461 tcgagcgcgg cttggttacc ttcggcgtat tggatgggca gcgttccgtc ggcgagcccg
     2521 accagaaaaa ccgcatccca ttccagaccc ttcgcggagt gcagggaggc caaggtcacg
     2581 ccctgcaccg caggaggatg ggcggcgtcg gcgcgagcat cgagctcggc gacgaattga
     2641 ctcatatcga catccgcggg gccagctgcg aaatcatcgg ccagttccgc tagcgcgcgc
     2701 aacgattccc agcgcgaccg tgccgcgctg ccgccgggag gctcggtggt gaggccctgt
     2761 ccggccaata ccccgcgaac ggtggcgccc agctcagcca ccggatccgg gatgcctgcg
     2821 gtggctgcca tccgcagtgc gcggaccgcg gaccggacct ccggacgttg aaagaaccgc
     2881 tcgccgccgc gcacctgaaa cggaatcccc agcgcatcca atgcctgctc gtacgcctcg
     2941 gattgggcat tcacccgata cagcacagcg atctcggcag ccggaacacc gtcccgcagc
     3001 agtgccgcaa tggcctgcgc cgcagcggca gcctccgaga cctcgtcgtc gtgctcggcg
     3061 aaggtcggct tggggccggc cggctgctga ccctccagcg ataaccgcga acccgccggc
     3121 cggccacgag cggcggagat cacccggttt gcgagcgaca cgacctgggg tgtggagcgg
     3181 tagtcacggt gcagccgtac ggtcaccgcg tctggaaatc gcgcagtgaa tccgaggagg
     3241 aaacgaggag tcgcaccggc gaaggagtag atggtctggt tcgcgtcgcc gacgacggtg
     3301 aggtcgtcac ggccgcccag ccaggcatcc agtacccgct gctgcaacgg cgtgacgtcc
     3361 tggtattcgt cgacgacgaa gcagcggtag cgatcacgga actcctgcgc cacatctgaa
     3421 tgctcctcca gagcggcggc cgtgtgcagc agtagatcat cgaagtcgag cagccggttg
     3481 cggttcttga gctcctcgta gctggcgtag atcgccgcga cctgtgctgc cggcgccggg
     3541 gtctcccgcc tggccgaagc gaccgcggcg gggtagtccg cggcggtcac caggttcgcc
     3601 ttggcccatt cgatctcacc agcgaagtct cgaagatcct cggcaccggt gccccgaccg
     3661 gcccgctgag cggcctgacc gatcacccgc agcttgtgtt ccagcagcgg ccacagctcg
     3721 tcacccacca cccgaggcca gaagtagcgc agctgacgca gcgccgcggc gtggaaggtg
     3781 cgagcttgca cgccggccac cgccaaatcg cgcaaccggg tacgcagctc ccccgccgcc
     3841 cgggcggtga acgtcacggc caggacctgc ccaggagcaa catgaccggc acggaccagc
     3901 gctgcaatcc gccgggtaat ggtgcgcgtc tttccggtgc ccgcgccggc cagtacgcaa
     3961 accggaccac gcggcgcgca gaccgcgacg cgctgctcct cgtcgagccc ttccagcgga
     4021 ccccggtgct gtcccacgac agacatcctc gcagagcggg ccgggtgccc ccgcatcccg
     4081 aacccaacag ggcttcgtgg cacctgcccc agcctgagga acatcgcggg gagtttcggt
     4141 gttggtgccg ggagtgagca aagtgacgat gtactcgacg gtgtggtgcg gctactgcag
     4201 gcggctcaag gcgcagctgg accgtgcagg catcgacttc gacgaagtgg acatcgagca
     4261 cgacgccgca gctgcctctt tcgtcgcggg ggtgaatggg ggcaaccaga ccgtgccgac
     4321 cgtgctgctg ccggatggtt cggtgctgac caaccccacc gtcgatcaga tcgtggcagc
     4381 cactgcggcc tgatgatctc cagcagaatc gaccactaag cgttatgatt ccagacgtgc
     4441 ttggtcggtg acggctcggg ggctgcgagg gcggggttcc agtgaagatc agggaccgga
     4501 aacggtggga gcgggaactc aatcaccaca tgcggcggca cgccgctgac ctgcatgggc
     4561 aacctcagaa gcgagccgag ccggccggga tatggatgac cgcgccacgg ttgatcctct
     4621 ggacgctcat ggtgatcatc gtcacgagcg cgggctgggc ggccggactg tatctcttct
     4681 aaccggcgct gcccgggttc agggcagctc gacgttgccc agggcaacca gcggatcggc
     4741 cagtcgcttg gcgtcgccca ccaccacacc ggtgaaccgg ctcggtgcga agaaatgggt
     4801 agccgcctcg gcaacctggg cggccgtgac cgccgctagc cgtgcggggt gggtgagcag
     4861 ccagtcgaga tccaaaccga gagtggccag cgtggcaagg tggccagcta gccctcgctg
     4921 cgacgacgtg gcgatggtca gcgatccgat cgcgtagtgc cgggcgttgt ccacctcggc
     4981 ctcgtcggga ggtgcaacag cca
//
LOCUS       DASVXZ010000082         2194 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_990439, whole genome shotgun sequence.
ACCESSION   DASVXZ010000082 DASVXZ010000000
VERSION     DASVXZ010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990439"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(565..1041)
                     /locus_tag="VF788_01555"
     CDS             complement(565..1041)
                     /locus_tag="VF788_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932889.1"
                     /translation="MTRERKPMTTNNTTTTPDLTSSVERPSWGEVTATVPTVTAAVWC
                     SSVGTTWTIELHTHAKDTAYGTLVKWITSGIPTSHPLPDALAYQLLAACGLHVFPDLT
                     AGPSAHSRHRIGYASADAKLIALARTICDEATETGVHPLMLAAQRIRRNNAGCHGQ"
     gene            1552..1689
                     /locus_tag="VF788_01560"
     CDS             1552..1689
                     /locus_tag="VF788_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932890.1"
                     /translation="MPPIPLGLGFLAESPLAAMADLSPWPGALNLYSPLNEVFGQNLR
                     R"
     gene            1796..1954
                     /locus_tag="VF788_01565"
     CDS             1796..1954
                     /locus_tag="VF788_01565"
                     /inference="COORDINATES: protein motif:HMM:NF015799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing protein"
                     /protein_id="HEX8932891.1"
                     /translation="MIIAQNRCTADETLDILRSASSHRNIKLRDVAHDIITPVGGGPS
                     RTHAPFRT"
     gene            complement(1975..>2194)
                     /locus_tag="VF788_01570"
     CDS             complement(1975..>2194)
                     /locus_tag="VF788_01570"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8932892.1"
                     /translation="FTAVSFLALCGVRLLLETADRARAEGMTLRLVAQSRAVLRALEV
                     SGLQEQVACVATVAEAVAQCSTYPRLAQ"
BASE COUNT          388 a          694 c          668 g          444 t
ORIGIN      
        1 cggtgtcccc tcccgtagtg atctcgatcg ttgtagcgtc ggtaatcact gtgaccgctg
       61 tgatcatagt ggttgtcgtc gtagccgcca tgacggctgc catacgaaaa aacgtcactg
      121 accctcattt acctctcctc caactccgac gtcaggaata gtctttcctg gacgactttt
      181 tcccacgagg attaccgtga tcttccgata ggccgttcta acgggactgg cttaacggac
      241 atgcaccgta gtgaacagca cctttaaggg cgttgcacgg tcacgcacgt cgactcgaga
      301 tacctcagta aggtttcggt gacgctgtcg atcgagtgtg cttctttcaa gtgatgcgct
      361 acctgtcgca tcagatcgtc cctggtcgat gcggtgagct gactcccgca ctcttcatgc
      421 ccacattgga actggtgcaa ttctgcacct gctacctcat catcgggcgg cagtgatcgt
      481 aaccgttttc ccacactcca ctttcgcatg accaccccgc gcggttcagc ctgtggtcag
      541 gttttcagca ggatcagaga cccgttactg tccgtgacac ccagcgttgt ttcgtctgat
      601 ccgctgcgcg gcgagcatca gtgggtgtac tcccgtttcg gtggcctcgt cgcagatggt
      661 gcgggccaga gcgatcagct tggcgtcggc gctggcgtag ccgatgcggt ggcggctgtg
      721 tgcgctgggg cctgcggtta aatcggggaa cacgtgcagt ccgcacgcgg cgagcaactg
      781 gtaggccagt gcgtccggca ggggatggga ggttgggatg ccggaggtga tccatttcac
      841 gagcgtgccg taggcggtgt ccttggcatg cgtatgcaac tcaatggtcc aggtggtccc
      901 tactgatgag caccacaccg cggcggtcac cgtcggtacg gtggctgtta cctcgcccca
      961 actcggcctc tcgacggatg aggtgaggtc cggggttgtg gtggtgttat tggtcgtcat
     1021 cggtttccgc tcacgggtca tcctcaggtc cggcgcgccg gtgtcgcgac tgtgaaaatc
     1081 tgcacgcaaa ccgtggtagt cgctggcctc tcgccgagcc gtggtgtgat aaacgtcgca
     1141 agcggagcaa cctggaagaa ccgggatctc gcgtccgctg aacggtcctg gctggaaggg
     1201 agaacagtct ggcgtcatct cacatcccgt atcggggaca tttggggaga tggccgcgct
     1261 gtcggaccgt catccgacct taacaccccg gtcgggggaa tgccgcctgt gcgcgcacgc
     1321 tcgcactatc gggcaacaca cttcgtgtgg gaggttgcct atcttaggcg tctcgagcac
     1381 gtcgggctac cggcgcgctg cctacgatga cctaccagat tcggcgctcc agtgtcgaga
     1441 accgagatga ttttattcaa gaacgcgagc gtgcctcggc tgtaggcgag ctccagcaac
     1501 tgttgatcga cgctggcagc cttatcgggt tcctggcgaa ggtgtgccga tatgccgccg
     1561 ataccgttgg gcctgggctt tcttgcggaa tcacccttag ccgcgatggc agacctgtca
     1621 ccgtggcccg gggcgctcaa cctttactct cccctcaacg aggtgttcgg ccagaacctt
     1681 cgccgctgag gcatccgagc accgcgcctc gcgcagcgac tcgctgacca ggcggagctc
     1741 ggcgagaacc tcgaagctgc cctggcatcg cgctccatca tcgaccaagc gttaggtgat
     1801 catcgctcag aaccgttgca ccgccgacga aaccttggac atcctgcgca gcgcgtcgtc
     1861 gcaccgcaac atcaagctcc gcgacgtcgc ccacgacatc atcacccccg tcggcggggg
     1921 accatctcga acccacgcac ccttccgcac gtagaccgtc cccgagccag cgggttactg
     1981 ggcgaggcgg ggataggtcg agcactgcgc caccgcctcg gcaaccgtgg caacgcaggc
     2041 cacctgctcc tgcagcccgg atacctccag agcgcgcagc accgcgcgac tctgtgcgac
     2101 cagccgcagc gtcatcccct cggcacgggc ccgatcggcg gtctccagca gcagacggac
     2161 gccgcagagg gccaggaatg acaccgcggt gaag
//
LOCUS       DASVXZ010000083         3389 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1618113, whole genome shotgun sequence.
ACCESSION   DASVXZ010000083 DASVXZ010000000
VERSION     DASVXZ010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3389
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1618113"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(672..1739)
                     /locus_tag="VF788_01575"
     CDS             complement(672..1739)
                     /locus_tag="VF788_01575"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8932893.1"
                     /translation="MTGDPQELPPSGFVEALQRHSVPTSSDWFAYRFRHEPARQRAAD
                     SLGAELGVSFAAEDIFLTRGAGGAIALALHTVVDPGDEVVFLSPPWFFYEAMILASGA
                     IPVRVRLEPPTFDLDIEAIVAALGSRTRAVLINTPHNPSGRIYPAAALQRLAEGLAET
                     ADRYGRPIWVISDEAYSRILFDNHRFVSPGLFHPYSMLAHTYSKSTLTPGQRLGYLAL
                     APGLPQAETMRTALFHVLLSSGLAMPDAVMQYALPDIDSLVIDITAIQHRRDRMVTEL
                     RKQGYQLHIPEGTFYLLPQAPIADDHAFCALLAEQGVAVLPGQVIELPGYFRICLTAT
                     DEMVEQSLPIFAHALQQARSS"
     gene            complement(1861..2925)
                     /locus_tag="VF788_01580"
     CDS             complement(1861..2925)
                     /locus_tag="VF788_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019813285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEX8932894.1"
                     /translation="MLSPTAAHQVRAPMLPAPRGPLSTAVLDTLRGHTTAAATRIKPS
                     TLAQADPYGEDLQLALYCCYELHYRGFAGVMEDLEWAPGLLAVRQQLEGAFLAALRCE
                     VPGGANVTAEVDALLVEVIDAGGVSHYLRRAGQLWQLREYLAHRSLYHLKEADPQAWV
                     IPRLSGPAKTTLVTIEHDEYGSGHPARMHARLFATMMTELGLCAEYGAYLDAAPAATL
                     SEVNFISLCGLHRALRGALIGQFATVELTSSPGSDRLVATMRRLGCSPAAIEFYAEHI
                     EADAVHEQLLRHGVITPLLAAEPELAADVVFGIQASTLLAERLSELLLRQWAQNRPTL
                     RHPLPDAPAGTPTAERDARQ"
     gene            complement(2919..3128)
                     /locus_tag="VF788_01585"
     CDS             complement(2919..3128)
                     /locus_tag="VF788_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HEX8932895.1"
                     /translation="MCPEPLQRRVMVTKEEPVLVHGPIEVVLPDGRSVSSDRAVSALC
                     TCRRSRCYPFCDTSHRRRVRKEPRC"
BASE COUNT          618 a         1085 c         1123 g          563 t
ORIGIN      
        1 gcaggccgtg ataagcccgc tggcctgcgg gcggcccaac gccaccatca gcacctcccg
       61 cgcgacctcc tagtgagcag ggcatctccg ggatgaccga caagacccct tctccacccc
      121 tgcccactgt ctgcctgcag aaaaccaccg acgcgagatc accgccgctg gtgtcgcaag
      181 cacagggata ccgacacggc cactagctgg taacgatggc gcatcaggtc agatgcggcc
      241 ccggcgacgg cggtaatttg cgcacgtcat gcccggtgac caacagaaaa gttcaccacc
      301 aaggcaacca cctcacacag atgggcagcg tcattatcgc tggccatttc atccccgtcc
      361 gacgcccccg acttcctcgt tccgcaattg ctccagcgtg gagaggtgat cgtcacccat
      421 aacccggtac ggattggccg ggtccacgac catccccacc cgggcacgat ccttcctgtg
      481 atcgggatgg tccacgaaag cttgcctcgc taccgccctc acatcggcag caaggcacat
      541 tttggtgcac cgccaacccg gcctcgaagc cgagccgggt ctcgggttgc ttcctggcgc
      601 acgtgaatgt actcatctgc gggaagatct tcggctgttg ctacccgatg acgtattggc
      661 catcacgcgt gtcagctaga tcgggcttgt tggagggcgt gagcgaagat ggggagtgac
      721 tgttcgacca tttcatcggt ggctgtgagg cagatgcgga agtagccggg tagctcgatg
      781 acctggccgg ggagcacggc aactccttgc tcggccagca gcgcgcagaa ggcatggtca
      841 tccgctatgg gagcctgggg taggaggtag aaggttccct ccgggatgtg tagctggtaa
      901 ccctgtttcc gcaactctgt caccatgcgg tcgcggcggt gttgaattgc cgtgatgtcg
      961 atgacgaggc tgtcgatgtc gggtagggcg tattgcatga ccgcgtcggg catcgccagc
     1021 ccggaggaga gcaggacgtg gaacagggct gtgcgcatgg tctcggcctg tggtaggccg
     1081 ggcgccaagg cgaggtagcc cagccgttga cccggggtca acgtgctttt gctgtaggta
     1141 tgggcgagca ttgaatacgg gtggaagagg ccggggctga cgaagcggtg attgtcgaac
     1201 aggatccggc tgtatgcttc gtcggaaatt acccaaatgg gccggccata gcggtccgcc
     1261 gtttcggcga ggccctcggc caggcgctgc agggccgctg ccgggtagat ccgtccgctc
     1321 gggttgtgcg gagtgttaat cagcacggct ctggtgcgtg atcccagcgc cgcgacgatg
     1381 gcctcgatgt ccaaatcgaa ggtcggaggc tcgagccgga cccggactgg gatggcgccg
     1441 ctggcgagga tcattgcttc gtagaaaaac catggtgggc tcaagaaaac aacttcatcg
     1501 cctgggtcca ccacggtgtg caaagccaga gcgatggccc caccagcacc gcgggtcagg
     1561 aagatgtcct cagcggcaaa gctcacaccc agctcggcgc ccaacgagtc tgccgccctc
     1621 tgacgtgcgg gctcgtgccg gaaacggtag gcgaaccagt cgctggaggt gggaacactg
     1681 tgtcgctgca gcgcctcgac gaatccggac gggggcagct cttggggatc accggtcatg
     1741 aagttagcga tttttgctcg cccacccggg ccggggagtg cagcaccgtt tcaacgaagg
     1801 gatgcagggc ccgctgcacc gccaagaccc gtctggcgat cagctgctcg accatctcca
     1861 tcattgcctc gcatcacgtt ccgcggtcgg cgtgccagcg ggggcgtcgg gaaggggatg
     1921 gcgcagcgtg ggccggttct gggcccactg ccgcagcagc agttcggaaa gccgctcggc
     1981 aagcagggtg ctggcttgga tgccgaagac cacatcagcg gccagctccg gctcagccgc
     2041 aaggagcggc gtgatgacgc cgtggcgaag gagctgctcg tgtaccgcat cggcctcgat
     2101 gtgctcggcg tagaactcga tcgcagcggg gctgcaacct aatcggcgca tggtcgccac
     2161 cagccggtcc gaccccggag aggaggtcag ctccacggtg gcgaactgac caatgagcgc
     2221 cccgcgaagc gcgcggtgca acccgcacag cgagatgaag ttgacctcgg acagggtggc
     2281 ggccggcgcg gcgtcgaggt aggcaccgta ctcggcgcac agcccgagct cggtcatcat
     2341 cgtcgcgaac aaccgggcgt gcatccgagc cgggtggcct gagccgtact cgtcgtgctc
     2401 gatggtgacc agcgtcgttt tggctggccc gctgagccgg ggaatcaccc atgcttgcgg
     2461 gtcggcctct ttgaggtggt acagcgagcg gtgcgcgagg tactcgcgta gctgccatag
     2521 ctgcccggcg cggcgcagat agtgcgagac accaccagca tcgattacct ccaccagcag
     2581 cgcgtcaacc tcggccgtga cgttggcgcc gccggggacc tcgcagcgca gtgcggccag
     2641 gaaggccccc tccagctgct ggcgaaccgc gagcaggccc ggggcccact ccaggtcctc
     2701 catgactccg gcgaagccgc ggtagtgcag ctcataacag caatacaagg ccagctgcag
     2761 gtcctcaccg tagggatcgg cctgcgcgag ggtcgagggc ttgatccgcg tggcagccgc
     2821 cgtggtgtgc ccgcgcaagg tgtccagcac cgcggtggac agcgggccac gcggcgccgg
     2881 cagcatcggc gccctcacct ggtgcgctgc ggtagggctc agcatcgcgg ttccttccgt
     2941 acccgtcggc ggtgactggt gtcacaaaac ggataacagc ggctgcggcg acaggtgcac
     3001 aacgcgctca ccgcccgatc agagctcacg ctgcgaccat cgggcaggac aacctcgatg
     3061 ggaccgtgca ccaacaccgg ttcttccttg gtcaccatga cccggcgctg cagcggctca
     3121 ggacacatgg cggctccgat aactaccagc tgctcctcac cctgtccggg ttcgattagt
     3181 ccgcgggctt gcagcatggt ggcccgggca cgcatcaccg gcccgaaagg caccgcgcga
     3241 cgggtcagta cctcagcctg cagacccgcg tccgcgaagc gcttgcaggt gatgtcctcg
     3301 tcgcagatcg cggaatgcac cagcaacatc attccctccg gggagagcaa agcgggtcct
     3361 tccgcgcaga tccgatccag cagcatccg
//
LOCUS       DASVXZ010000084         6460 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_457665, whole genome shotgun sequence.
ACCESSION   DASVXZ010000084 DASVXZ010000000
VERSION     DASVXZ010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6460
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457665"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..697
                     /locus_tag="VF788_01590"
     CDS             <1..697
                     /locus_tag="VF788_01590"
                     /inference="COORDINATES: protein motif:HMM:NF015700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AfsA-related hotdog domain-containing protein"
                     /protein_id="HEX8932896.1"
                     /translation="TARIVEQRTRDGKVTGIELHLELTELITGRIGSAHVGLRFRSSR
                     AYHELRTQNRGGEALPSTATYRPYHRAVPAIPAAVGRRDPRNVIVSQPTTVDGVVIAD
                     LLLSTTHPSMFDHPQDHIPGMVLIEAARQVAIAGLADQHGFDPARIQVRGLTSKFTKF
                     AELEPTTRLIATVGTSSAEKRFGDTQTHPIQLERNADRADLPVAVELYQEGDVVCRVT
                     TTLRVVSTDPREN"
     gene            703..1437
                     /locus_tag="VF788_01595"
     CDS             703..1437
                     /locus_tag="VF788_01595"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEX8932897.1"
                     /translation="MTTNVIKLPPRTAAHSRVRAIWTDFGGVLTPPVSETMASFAARL
                     GTTAELLRSAMEQVGRSLGTDMMAPLDTPLLTEQQWARQVEQVLLAHHGVRTDLSTFG
                     ARWFEGRPANQHWVQFLLALRAAGWFVGMLSNMVPSWEEHWRRMVPASQLFDAVISSH
                     QVGCRKPELAIFELAAARAGVAPDQCVLVDDLEANCIGARAAGWQAVHFQETAQAATE
                     LGRLLIARPGAAMSAPGTATWMTASK"
     gene            1631..1801
                     /locus_tag="VF788_01600"
     CDS             1631..1801
                     /locus_tag="VF788_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932898.1"
                     /translation="MDEHSASAPTAPISATEVARLQQVLKDVRFSLERGDWRAALAMA
                     YAGLAEDRISRM"
     gene            complement(1830..2738)
                     /locus_tag="VF788_01605"
     CDS             complement(1830..2738)
                     /locus_tag="VF788_01605"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8932899.1"
                     /translation="MSTREKDMSGSSDRAPIVAVLGTGIMGSGMARSLLREGLTVRVW
                     NRTRERAQILADFGATVADSAAEAVRAADVVVTMLTDGPTVAKAMDAAAAGLCRGQIW
                     LQTSTVGTGAVRSLVDIARAHDLEFVDAPVLGTRQPAEQGQLLVLAAGPERVRGRLRP
                     VLDAIGARTLWFDDTGEAGTATRVKIVVNSWVLTLVSGVAEAMSLAEGLGLAPTVFLE
                     VVSGGALDSGYLQAKAAAMLSGDYTANFALRTAAKDSRLVVADAAEAGVRLYLAAAVA
                     ERFQQALEQGHGDEDLAATYFASFDR"
     gene            2940..4481
                     /locus_tag="VF788_01610"
     CDS             2940..4481
                     /locus_tag="VF788_01610"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8932900.1"
                     /translation="MATDVTAPVGASRRPTRTAGVATVLAVALASVTLPLAVTAPAVA
                     LNAMSTDLNASPAASQWVLNAYNVTFAACMLAAGSLADLFGRRKALVGGTVLFALMSL
                     LCAVVSNITLVDVFRGLQGVGAAGILTSGAAVLANGFTGPARAKAFGVLGASFGFGLA
                     LGPLTAGALVDTFGWRSVFWLNVVIGTIVVLVSRYLPESRDPNATRVDWAGLATFSSS
                     LFLLTLAFVVGPADGWVSLPTLGSIVGFLVFLALFVFVEGRQRRPMFDLTLFRRPTFV
                     AVVCQPFTITFGFVVLLVYLPTYFQGVGGIGTAASGALLLPLTVPVLLIPLLAGPVAA
                     RIPLRVMLACSSLLIAAGSLWLVVLSPTASWPQLVGPLLVFGIGVGSAFGVMDNAAVS
                     VVSHERAGMASGIFNTMRITGEGIAIAGAASLLATLTAAGITQQVTAIDGTATSAAGE
                     VVRGHIAAAVSSLGGSAVDARTVLASSLTSAMHTVFVALAVLALAGALATFVVITDKD
                     LDQSS"
     gene            4512..5462
                     /locus_tag="VF788_01615"
     CDS             4512..5462
                     /locus_tag="VF788_01615"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8932901.1"
                     /translation="MQQRILGSSGFKVGAVGLGCMGMSFAYDAGNRDDSESLQVIHRA
                     IDLGVTLIDTADVYGPFTNEELVGQALAGRRDQVTLASKCGLVIKNGEITPYGHPDHI
                     RHAAEASLQRLGVETIDLYQLHRVDPTIPYEDTWGAMAELVKAGSVRAIGMSEVTAEQ
                     LTAAHAIHPVATVQSELSLWSTDQLDEVVPWCRANGAAFIPYAPLGRGFLTGALSSAD
                     QLESSDWRNSNPRFSSKSIDANQRIVNIIRSVAAQHGATPAQVALAWVLGLGEDIIPI
                     PGTKRLRYLEENVAAVGIELTASDLAELNMIADHVVGTRY"
     gene            5553..>6460
                     /locus_tag="VF788_01620"
     CDS             5553..>6460
                     /locus_tag="VF788_01620"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8932902.1"
                     /translation="MTFGGGASFLGAPDRDWAEFGTVADQDVHRMVGTALDSGINFFD
                     TADVYKNGIGEQLLGETLEKVRDQVIIGTKGRWRITDDPNDVGANRHHLIAAVESSLR
                     RLRTDYIDLYHIHGFDPRTSLEETLRVLDDLIRAGKIRYVGVSNFAGWQLMKALSISD
                     HRNLSKFVCYQGYYNLGARDLEREIVPLAVDQKVGVTVWSPLAGGFLTGKYHRGEPLP
                     VGSRLSERTPAESAPLTDPQKAYDTIDEMSRIATERGVTIAQVALNWLLRKPAVTSLV
                     IGATKLQQLEDNLNAVEWQLTAEEVQA"
BASE COUNT         1161 a         2065 c         2007 g         1227 t
ORIGIN      
        1 caccgcgagg atcgtcgaac agcgcacccg cgacggcaag gtgactggca tcgaactgca
       61 tctcgagctg accgagctga tcaccggccg aattggtagt gcccacgtcg gactgcgctt
      121 ccgttcttcg cgcgcttatc acgagctgcg tacccaaaac cgcggcggcg aagcgctgcc
      181 ctcgacagca acttaccggc cctatcaccg cgcggttccg gccatcccgg ccgctgtcgg
      241 ccgaagggat ccgcgcaatg tgatcgtcag tcagcccacc acggtcgacg gcgtcgtaat
      301 cgccgatctg ttgctctcga cgacgcaccc ctcgatgttc gaccatcctc aagaccacat
      361 ccccggcatg gtcttgatcg aagcggccag gcaagtggca atcgccgggc tcgccgacca
      421 acatggtttc gacccagccc ggattcaagt ccgggggctc acttcgaagt tcaccaagtt
      481 cgccgagttg gaaccgacaa cccggctgat cgccacagtc gggacgagtt cggctgagaa
      541 gcgtttcggt gacacccaga cccacccgat ccagcttgaa cggaatgccg accgggccga
      601 cttgcccgtt gccgtcgagc tgtaccaaga gggtgacgtg gtctgccgcg tcaccaccac
      661 actgcgtgtc gtatccactg acccacgaga gaactgacaa tcatgactac caatgtgatc
      721 aagctaccac cgcggaccgc agcacactca cgggtcaggg ccatatggac cgacttcggc
      781 ggtgtgctga ccccgccggt gtccgagacc atggccagct tcgcagcgcg acttggcacc
      841 accgccgagc tgttacgtag cgcgatggag caagttggac gttccctggg caccgacatg
      901 atggctccac tggatacccc gttgctcacc gagcagcaat gggcacgcca ggtcgagcag
      961 gtgctgcttg cgcaccacgg cgttcgcacc gatctctcca cctttggcgc ccgctggttc
     1021 gaaggccgcc cggccaacca gcactgggtg cagttcctcc tcgcgctgcg tgccgccggc
     1081 tggttcgtcg ggatgctgtc caacatggtg ccctcgtggg aggaacactg gcgccggatg
     1141 gtcccggcca gccagctgtt cgacgctgtt atctcttctc accaggtcgg ctgccgaaag
     1201 ccggagctgg cgatcttcga gctggccgcc gcccgcgccg gcgtcgcacc tgaccagtgc
     1261 gtgctggtcg acgatctcga ggcgaattgc atcggtgcga gagcggccgg ctggcaggca
     1321 gtgcatttcc aggaaaccgc acaagccgcg accgaacttg gccggctcct gatcgccaga
     1381 cctggggccg ccatgtctgc gccaggaact gccacctgga tgaccgcatc caagtaggtc
     1441 cgaggtgaac tgggtccata aatcgtttgc aactggagtc agccacgagt gcttccacac
     1501 agctttcgcg cgtgccttcg ttattggccg aattggagga gctgggccgc gaggcctggc
     1561 ggatcagtga gcgagagcgg acggtactcg ccgaaatcag ggtcttacga gagatcgagg
     1621 agaatttgta atggacgagc actccgcttc agcaccaaca gcaccgatca gcgcgacgga
     1681 agtggcccgg ttgcagcagg tgctcaagga tgtgcggttc tcgctggagc gaggcgactg
     1741 gcgggctgcg ctggcaatgg cctacgccgg gctcgctgaa gatcggataa gccgaatgtg
     1801 actccgttca gtttccggca ggggtcagat caccggtcga aactggcgaa gtacgtcgca
     1861 gccagatcct cgtcgccgtg gccctgctcg agggcttgct ggaagcgctc ggcaaccgcg
     1921 gcggcaagat acagccgtac accggcctcg gcagcgtcgg ccaccaccaa ccgggagtct
     1981 ttggccgccg tacgcagagc gaagttggcc gtgtagtccc cgctcaacat cgccgcggcc
     2041 ttcgcctgca ggtagccgct gtccagggca cctccggaga ccacctcgag gaacaccgta
     2101 ggggccaagc ccaatccctc ggcgagcgac atggcttcgg cgacaccgct aaccaacgtc
     2161 aggacccaac tgttgacaac aatcttgacc cgggtggcgg tcccggcctc gccggtatcg
     2221 tcgaaccaca gcgtgcgcgc tccgatagcg tcgaggaccg gccgtagccg tcctcgcacc
     2281 cgctccggtc cggccgcaag gaccaagagt tggccctgct cggccggttg ccgcgtgccg
     2341 agtacaggag catcgacaaa ctcaagatcg tgtgcgcggg cgatatccac cagcgatcgg
     2401 actgcgccgg tacccaccgt gctggtctgg agccagatct gtccgcggca gagcccggcc
     2461 gccgccgcgt ccattgcctt cgccacggtg gggccgtcgg tgagcatcgt caccacgaca
     2521 tccgccgcgc gcactgcttc agctgcggag tccgccactg tagcgccgaa gtcggccagg
     2581 atctgagccc gctcgcgagt gcggttccat acccggaccg tcaacccttc ccggagcaag
     2641 ctccgcgcca tccccgagcc catgatgcca gtgccgagca ccgcaacgat gggcgcccga
     2701 tcggacgatc cgctcatgtc cttctccctc gtcgacaacc aatgtggccc ctcaccgccg
     2761 cgggaccctg ctgggtggtg atcgcccgaa caccgtcccg atgctgcaac agagaatcgc
     2821 ttgaggtggt gttccgatca ccacagcacc gctactataa gaaatcttat attgattcgt
     2881 agtcgtagtg taagttggtg tcgatgatag cttagaccct ggagacccga ggagtgcaga
     2941 tggcaaccga cgtgaccgcg cctgtcggcg ccagccggcg tccgaccagg acggccggtg
     3001 tggcgacggt gctcgcggtc gccttagcca gcgtgacgct gccgctggcg gtcaccgccc
     3061 ctgcggtggc actcaacgca atgtccaccg atctcaacgc atcaccggcg gcctcccagt
     3121 gggtgctcaa cgcctacaac gtgaccttcg cggcgtgcat gttggccgcc ggctcgctgg
     3181 ccgatctttt cggtcgccgc aaagccctgg tcgggggcac ggtgctgttc gccctgatgt
     3241 cgctgctgtg cgccgtcgtc agcaacatca cgctggttga cgtgttccgc ggcttacagg
     3301 gcgtcggcgc ggcgggcatc ttgaccagcg gcgccgcagt gcttgccaac ggcttcaccg
     3361 ggccggcccg ggccaaggcg ttcggcgttc tcggcgcttc tttcggcttt ggcctcgcac
     3421 tggggccact gaccgcgggc gctctggttg acaccttcgg gtggcggtca gtgttctggc
     3481 tcaacgtcgt gatcgggacg atcgtggtgt tggtgtccag gtatttacca gaatctcgtg
     3541 atcccaacgc gacacgggtt gactgggccg gtctggcgac cttctccagc agcttgtttt
     3601 tattgacgtt ggccttcgta gtcggacctg ctgacggttg ggtgagtctg ccgaccctag
     3661 gatcgatcgt cgggttcctc gtctttcttg cactgttcgt cttcgttgaa ggccggcagc
     3721 gccggccgat gttcgacttg acgctgttcc gccggcccac cttcgtggcc gttgtctgcc
     3781 agcccttcac gatcaccttc ggattcgtag tactgctggt gtacctcccg acctatttcc
     3841 agggggtcgg gggaattggc accgccgcct caggcgcgct gctattgccg ctcaccgtgc
     3901 cggtactcct gatcccgctg ctggccggtc cggtcgccgc acggatcccg ctgcgggtga
     3961 tgctcgcctg cagttcactg ctgatcgccg ctggttcgct gtggttggtc gtgctcagcc
     4021 cgaccgcgag ttggccgcaa cttgtcggcc cgctgttggt gttcggcatc ggggtcggca
     4081 gcgctttcgg cgtgatggac aacgcggccg tcagcgtggt gtcccatgaa cgggccggaa
     4141 tggcctcggg aatcttcaac acgatgcgga tcaccggcga gggcattgct attgcaggcg
     4201 ctgcatcgct gttggcgaca ctcacggcag ccggcatcac ccaacaggtg accgccatcg
     4261 acggcacggc caccagcgca gccggtgagg tcgtacgggg acacatcgcg gccgcagttt
     4321 cctcgctcgg tggatctgct gtggatgccc ggaccgtgtt ggcgagcagc ctcacctctg
     4381 ccatgcacac tgttttcgtg gcgctggcgg ttctcgcttt ggctggagcg ctcgcaacct
     4441 tcgtggttat tacggataaa gatctcgacc agtcctcctg agagctgcac taccggtaag
     4501 gagcaacagt catgcagcag cgaatcctgg gttcatcggg cttcaaagtt ggtgcggtcg
     4561 gtctcggatg tatgggaatg agtttcgcct acgacgcagg caaccgcgac gactccgagt
     4621 ccctccaggt tatccatcgt gccattgacc tcggtgtcac attgatcgac accgccgatg
     4681 tctacgggcc cttcaccaat gaggaactgg tcggtcaggc acttgctggc cgtcgtgatc
     4741 aagtaacact ggccagcaaa tgtggattag tgatcaagaa tggggagatc acaccctatg
     4801 gtcaccccga tcacatccgg cacgccgcgg aggcttcgct gcagcggctg ggtgtcgaga
     4861 cgatcgacct ctaccaactg caccgggtcg acccgacgat tccgtatgag gacacctggg
     4921 gtgcaatggc cgaattggtc aaggccggga gcgtacgggc tatcgggatg tccgaggtga
     4981 ccgccgagca gttgactgcg gcgcatgcca ttcacccggt ggcaaccgtg cagagcgagc
     5041 tctcgctgtg gagcactgac cagcttgacg aggtcgtgcc gtggtgcaga gccaacggtg
     5101 ctgccttcat tccttatgcc ccgttgggca gaggcttcct gaccggcgca ctatcctcgg
     5161 cggaccagtt ggaaagctcc gactggcgca attccaaccc gaggttcagt tccaaatcca
     5221 tcgatgccaa tcagcgcatc gtcaacatca tccgctcggt ggcggcccag cacggtgcta
     5281 ccccggccca ggtcgcgctg gcctgggtac tgggcctcgg cgaggacatc attccgattc
     5341 ccggtaccaa acggctgcga tacctggaag agaacgtcgc cgcggtaggg atcgagctca
     5401 ccgcttccga cctcgcagag ctcaacatga tcgctgacca cgtcgtcggt acccgttatt
     5461 gaataacgag aggaacgcag aaaggaagta tgatgaaata tcgctacctc ggtgacaccg
     5521 gtctcgcggt gtctgaactg tgcttcggcg cgatgacctt tggtggcggg gcgtctttcc
     5581 tcggcgctcc cgaccgggac tgggccgagt ttggaacggt cgctgatcag gacgtgcacc
     5641 ggatggtggg caccgcgctt gacagtggaa tcaatttctt cgataccgcg gacgtgtaca
     5701 agaacggcat cggtgaacaa ctgctcggcg agactctgga gaaggtgcgc gaccaggtca
     5761 tcatcggcac caagggccgg tggcggatca ccgatgatcc gaatgacgtc ggcgcgaacc
     5821 ggcaccacct gattgccgca gtcgaatcca gtctgcgcag gttacggacc gactacatcg
     5881 acttgtacca tattcacggc tttgacccgc gcacctcatt agaggagacc ttgcgggtat
     5941 tggacgatct gatcagggcg ggcaagattc gctacgtggg ggtgtccaac ttcgctggct
     6001 ggcagttgat gaaggcgctg tcaatctccg accatcgcaa cctgtccaag ttcgtgtgct
     6061 accaaggtta ttacaacctg ggggcacggg accttgagcg ggaaatcgtg ccgctggcgg
     6121 tggaccagaa ggttggcgtc accgtgtgga gccccctggc tggcggcttt ttgaccggca
     6181 aataccacag aggtgagcca ttgccggtcg gcagtcgact atccgagcgg actccggccg
     6241 agtctgcccc gttaaccgac ccgcaaaagg cgtacgacac tatcgacgag atgagccgga
     6301 tcgccaccga acgcggtgtg acgattgccc aggtagcact caactggcta ctgcgtaaac
     6361 ccgcagttac gtcactggtc atcggcgcga caaaactgca gcaactggaa gataacctca
     6421 atgcggtgga gtggcagctc accgctgagg aagttcaagc
//
LOCUS       DASVXZ010000085         2015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_278293, whole genome shotgun sequence.
ACCESSION   DASVXZ010000085 DASVXZ010000000
VERSION     DASVXZ010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278293"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..581)
                     /locus_tag="VF788_01625"
     CDS             complement(174..581)
                     /locus_tag="VF788_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEX8932903.1"
                     /translation="MSAGQIAALVAAGAFVVLVGLLAVPLIKLGRTLDEATLAIRKAS
                     AEADPLFTGANTTVTQVNAQLERLDGITANAQAVTGNVSALTSLFTATLGGPLVRVAA
                     LSYGVSKAMGRRKRKDDASDRRPRGRRRDGGKR"
     gene            complement(652..1869)
                     /locus_tag="VF788_01630"
     CDS             complement(652..1869)
                     /locus_tag="VF788_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010314153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HEX8932904.1"
                     /translation="MTVRAQQPDGAVWERVSGALRGQGSGAEPVCAYIYDLGTLLAKL
                     DAVRAALTGRCELYYAIKANGHPAVLNTVAAHVEGFEVASLGEVGKAVAAGASRLVFS
                     GPAKTDAQIAGALEAGLDLLNVESMHELRRTGLIAAEFGVRVPVTLRVNRRASELPGQ
                     LRMAGAATQFGIDEVMLAEAIELAGCLPSVALRGFHLHAASNNLDADAHACFVTEAVA
                     WCTEQAARHRIDLDVIDVGGGIGVPYTGGEGFDLARFSYGIGATVDRLPPGIRLIFEL
                     GRFLVAEAGWYAAEVLDLKSTHGRCFAVLRGGTHHFRLPAAWGYSHPFAVLSIEEWRY
                     PFGRPEVRAVCVDVVGELCTPRDVLARGVWVERLRVGDVLVFPLAGAYGWEISHHDFL
                     SHPHPAQLVLGPP"
BASE COUNT          350 a          744 c          635 g          286 t
ORIGIN      
        1 catcccggcc cggacgtcgg cgctgaagga accaaacgcc gtggccagtt cccgcatcgc
       61 gtcgctgatg ttctcggcag cacctgctgg agtcaattgc cggacgcgcg cccgcgcctt
      121 acggctagcc gcaaccccgg cagcaattcc cagaccgaac cagagtgtcc gcctcaccgc
      181 ttgcccccgt cccgtcggcg cccgcgtggc cggcggtcag atgcatcgtc cttacgctta
      241 cgacgaccca tcgctttgct caccccatat gatagcgccg cgacccgaac cagcgggccg
      301 cccagcgtgg cggtgaacag ggaggtcagc gcggagacgt tcccggtcac cgcctgagca
      361 ttcgcggtga tcccgtccag ccgctccagc tgggcattga cctgggtgac ggtcgtgttc
      421 gccccggtga acagcggatc ggcttccgcg ctggccttgc ggatcgccaa cgtcgcctca
      481 tcgagggtgc ggccgagctt gatgagtggg acagccagta gccccaccag cacgacgaac
      541 gcaccagcgg caaccagggc agcgatctga cctgccgaca cgtgcacgtg ccctcctcgc
      601 cgatggcgac cggtgatggg cgatgaggtt accgggcccg ttcacgcgcc gtcacggtgg
      661 gccgagaacg agctgcgctg ggtgggggtg actgagaaaa tcgtggtggg aaatctccca
      721 gccgtacgct ccggcgaggg ggaacaccag aacgtcgccc acgcggagcc gctcaaccca
      781 gacgccacga gcgagcacgt cacggggcgt gcacagctca ccgaccacgt ctacgcacac
      841 cgcgcgcacc tctgggcggc cgaacggata gcgccactcc tcgatactca acaccgcgaa
      901 cgggtggctg tacccccagg cagccggcag ccggaaatga tgggttccac cgcgtagcac
      961 cgcgaaacag cggccgtgag tggacttgag gtcgagcacc tcagcggcgt accagccagc
     1021 ctcagccacc aggaaccgac ccaattcgaa gatcaaccgt atcccgggcg gcagccggtc
     1081 gaccgtcgcg ccaatcccgt aggagaacct cgctaggtca aaaccctcac cgcctgtgta
     1141 gggcaccccg atgccgccgc cgacgtcaat gacgtccaga tcgatccggt gccgggccgc
     1201 ctgctccgtg caccatgcca cggcctcggt aacaaagcac gcgtgcgcgt cagcgtcgag
     1261 gttgttcgac gccgcgtgca ggtgaaaacc ccgcagggcg accgagggaa ggcagccggc
     1321 caactcgatc gcctccgcca gcatcacctc gtcgataccg aactgggtgg cggcgccggc
     1381 cattctcagc tgccctggta gctcgctggc acgccggttg acccgtagcg tcaccggcac
     1441 gcggacaccg aactcggccg cgatcaatcc cgttctgcgc agctcgtgca tgctctccac
     1501 attgagcagg tccaggccgg cctccaacgc cccggcgatc tgcgcgtcgg tcttggccgg
     1561 accgctgaac accagccgcg aggcgcctgc ggcgaccgcc ttgccgacct cccccagcga
     1621 cgccacctca aacccctcga cgtgcgccgc caccgtgttc agcaccgcgg gatggccgtt
     1681 cgccttgatc gcgtagtaca gctcacagcg cccggtcagc gcggcgcgga ccgcgtcgag
     1741 cttggcaagc agggtgccca ggtcatagat gtaggcgcac accggctcgg cgccggaccc
     1801 ctgccctcgc agcgccccgc tcactcgttc ccagacggcc ccgtcgggtt gctgggcccg
     1861 aacggtcaac ggcgcacctc atgcagcggg ttgcgcacct ggacgtactg gtcaccgccg
     1921 gcgggatcca gccgcatccg ggcgaacgcc ttgatcggca acgttggtcc gaacaggacg
     1981 gcgcggtcgg cggcgacgtc ctcccgcaat gccgg
//
LOCUS       DASVXZ010000086         2338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1533679, whole genome shotgun sequence.
ACCESSION   DASVXZ010000086 DASVXZ010000000
VERSION     DASVXZ010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1533679"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            555..2033
                     /locus_tag="VF788_01635"
     CDS             555..2033
                     /locus_tag="VF788_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011726646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1634 family transposase"
                     /protein_id="HEX8932905.1"
                     /translation="MQIVHSSRRGSRDIEHIGSAHDDAALEALKAVARQRLAVGQPEL
                     DFGPDFAALQAGSGAGGGPLAITSSRMGYLWDALGHAYQLLGFEEAAGGDEVFRLLVL
                     ARIVEPTSKLDSLRVVEEAGFDPPAYATLKRRLPAFAKESWRQKLAAACARTADLGPA
                     SLVLYDVSTLYFETDAGDGFREPGFSKERRLEPQITIGLLTDASGFPLMVNAFEGNRG
                     ETTTMLPTIRAFMDAHQLADVTVVADAGMISAANQQAIEAAGLSFILGARIPDVPYVV
                     QAWRHEHPDEQIPDGHIFTQPWPAGPKDQRRDQIIYYQYRADRARRTLHGIDEQVAKA
                     EQAVAGKTAVKRNRFIQLTGATKSVNRTLEAKARALAGLKGYVTNLPDVTAEFVIDAY
                     HRLFHIEKSFRMSKHDLRARPIYHHKRESIDAHLTVVFAALAVSRWIEQTTGWSIKKF
                     VRTTRRYRTINIQAGEHTLTAVDPLPDDLRDALTRIHDRGAH"
BASE COUNT          425 a          760 c          763 g          390 t
ORIGIN      
        1 tacgcaggtg cattctcgct cagagcatgc cgatatggtc gaggctcata gtcgcgcgcg
       61 atccgatccg gagttcacag tctggcaaat tgggtgatca tcagaatcca gcgcaggaat
      121 cgatacatga aggatgcgtc atgtccacgg tcggggcgat ccgacaatcg gaggcgccta
      181 tggcccgcag acttcacgcc cgcgaccggc ccgatgaggc tcttgaaccg tccatatctg
      241 tcccatcagt ccacaccagt gctcatcagt ccgcgctggt gctcaccagt cccaaggacc
      301 gtaggtaaga ggtgtcgatg tcccgtgctc actggtcccg ctggacgccg ccagtccagt
      361 cagtgcaggt cagtccacag gccgcaggct gaaacctgac ttggctcaag atcgctgatc
      421 ttgggtaggg tgctagctgt tgagctgcgg tttcgtcgtg tgaacggcga aaatctgcgc
      481 actaagcggc cggttctagg ctgtctctcg tggcgtatgt gcgcacggtg aagacggcgt
      541 cgggggccag ggcggtgcag atcgtgcact cctcgcgtcg cgggtcgcgg gacatcgagc
      601 acatcggctc ggcgcatgac gatgcggcgt tggaggcgct caaggcggtg gcgaggcagc
      661 gtctggctgt ggggcagccc gagctcgact ttggcccgga cttcgcggcg ttgcaggccg
      721 gcagtggtgc tggtggtggg ccgcttgcga tcacgtcgtc gcggatgggg tacctgtggg
      781 acgcgctcgg ccacgcctac cagctgttgg ggttcgagga ggccgctggt ggtgacgagg
      841 tgttccgatt actggtgctg gcacggatcg tcgagccgac cagcaagctg gacagtctgc
      901 gggtggtcga ggaggcaggt ttcgacccgc cggcgtacgc gaccctcaag cggcgtctgc
      961 ccgcgttcgc gaaagagtcc tggcggcaga agttggccgc ggcgtgcgcc cgcaccgctg
     1021 atctggggcc ggcgtcactg gttctctacg atgtgtccac cttgtacttc gagaccgatg
     1081 ccggggacgg gttccgtgag cccgggttct ccaaagaacg ccgcctggag ccgcagatca
     1141 cgatcgggct gctcaccgac gcaagcgggt ttccgttgat ggttaacgcg ttcgagggca
     1201 accggggcga gaccactacg atgctgccga ccatccgtgc gttcatggat gcccaccagc
     1261 tggctgatgt cacggtcgtg gccgacgctg gcatgatctc tgcggccaac cagcaggcca
     1321 tcgaggccgc ggggttgtcg ttcatcctcg gcgcgcggat acccgacgtg ccgtacgtgg
     1381 tccaggcgtg gcgccacgag cacccggatg agcagatccc cgacgggcac atcttcaccc
     1441 agccctggcc tgccggcccc aaggaccagc gccgcgacca gatcatctac taccagtacc
     1501 gggcggaccg ggctcggcgc accctgcacg gcatcgacga acaggtcgca aaggccgagc
     1561 aggccgtcgc cggcaagacc gcggtcaaac gcaaccggtt catccagctc accggcgcca
     1621 ccaagagtgt caaccggacc ctggaagcca aggcacgcgc ccttgccggc ctcaaaggct
     1681 acgtcaccaa cctcccggac gtcaccgccg agttcgtgat cgacgcctac caccgactgt
     1741 tccacatcga gaagtcgttc cgaatgtcta aacacgacct acgtgcgcgg ccgatctacc
     1801 accacaagcg cgagtcgatc gacgcgcacc tgacggtcgt gttcgccgcc ctggccgtca
     1861 gcaggtggat cgagcagacc accggctggt cgatcaagaa gttcgtgcgc accacccgcc
     1921 gctaccgcac catcaacatc caggccggcg agcacaccct caccgccgtc gacccgctac
     1981 ccgacgacct ccgcgatgcc ctcacccgca tccacgaccg cggtgcgcac taatttgagc
     2041 caagtcagga atcgtttaac accaggccac cgccatcaag ggcgcctacg gcgtggctac
     2101 gccatggccg caagcgccca cccttgacac cggagtcccg gtgctaaccg gcggcagggg
     2161 cgaggggacg ggggtcgagt agggacccgc aagaggaggt gcctggagat ggacggtcag
     2221 ttggtgttct ggacccgtta cgaactcagc caggtgtacg ggccgagcgt gccgaggcgg
     2281 accaagatca ggccgtctcc aggccgtcag acgtcggcaa gggtcgatca acgacgac
//
LOCUS       DASVXZ010000087         7343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_816565, whole genome shotgun sequence.
ACCESSION   DASVXZ010000087 DASVXZ010000000
VERSION     DASVXZ010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7343
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_816565"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..587)
                     /gene="hypB"
                     /locus_tag="VF788_01640"
     CDS             complement(<1..587)
                     /gene="hypB"
                     /locus_tag="VF788_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020500157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEX8932906.1"
                     /translation="MCATCGCSGNTVLADLEHDHDHGHEHDHGHGHGHSHTHQTPETR
                     TVTLEQAVLARNDKLAERNRKWLAEHGILALNLMSSPGAGKTTLLERTIRELGAELRV
                     SVIEGDQETVLDADRIRATGAPAVQINTGSGCHLDAQMLAGGLETLDPPDGSVVLIEN
                     VGNLVCPALFDLGEQARVVITSVTEGAEKPRKYPQ"
     gene            complement(587..919)
                     /locus_tag="VF788_01645"
     CDS             complement(587..919)
                     /locus_tag="VF788_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEX8932907.1"
                     /translation="MHEMAITQSVIQAVCDRMGDVPVRRVCLEIGTLSGVVADSVRFC
                     FDLVTEGTPLEGASLEIVQPTGKARCRDCGAEFVLNDLLVLCACGSANRELLAGEELK
                     IREVEVMA"
     gene            998..3256
                     /gene="hypF"
                     /locus_tag="VF788_01650"
     CDS             998..3256
                     /gene="hypF"
                     /locus_tag="VF788_01650"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEX8932908.1"
                     /translation="MQHCIRVEVRVEGVVQGVGFRPYIHGLAHRLGLSGRVGNDTAGV
                     FMEVEGAEQAVSDFLAALPSEAPPLAVIEQVRTNPLTPTGESGFHIVSSNATGPRDTL
                     ISADTATCADCLRELADPTDRRFDYPFINCTNCGPRFTIVRDVPYDRPFTTMAPFAMC
                     SACASEYHDPTDRRFHAQPVCCPACGPRLRLLDAGGAELPGEPLAAAAALLTGGAVLA
                     VKGLGGFHVAALATDASATALLRSRKHREDKPFAVMVADLETAHQLCVINPVGEQVLA
                     GRRRPVVLLPRRPDARVAPAVSPGNRSLGLMLPYTPLHHLLLREVGGPIVLTSGNVSD
                     EPIAYHDDDARQRLTGIADAYLTHDRAIHMRTDDSVVRVFRGAELPVRRSRGYAPEPL
                     TLAQRVPRPILGCGAELKSTFCLARGRHAFVSHHIGDLENYETLRSFTEGVAHFQRLF
                     DLTPEVVAYDLHPEYLSTKYALELADLELVGVQHHHAHIASCLADNGAAGPVLGVAFD
                     GTGYGSDGTLWGGEFLLADLTGFQRMAHLVPVPLPGGAAAIRQPWRMAAAYLGDDAPP
                     ELIQRNAQHWDVVRAMASRQVNAPLTSSAGRLFDAVAAVLGIRDAINYEGQAAIELEQ
                     RADLTEHGTYSATVTEGPALQLHGVDLVRAALNDLRAGVAPEAIATRFHHGVADAIIR
                     VCLMLRDATGVGVAALSGGVFQNILLLERTVAGLERWGFRVLTHSRVPPNDAGISLGQ
                     VAIAAASLRSED"
     gene            complement(3608..4060)
                     /locus_tag="VF788_01655"
     CDS             complement(3608..4060)
                     /locus_tag="VF788_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932909.1"
                     /translation="MSELFDRPSSCPLRGLVVRALDAIVGFSKSTGSLTSKFSMLNLA
                     YGDSRLLRRGKTGVGHRLPDALADDGRRIYPKMPTGGVLVAGHHPAARDTADTLGLPM
                     VNGDVATLTTFFNREQFVALIRPDHIVGAIADPADPYADFAAALGTRA"
     gene            4154..4660
                     /locus_tag="VF788_01660"
     CDS             4154..4660
                     /locus_tag="VF788_01660"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8932910.1"
                     /translation="MFSRDHGRPLCWGRAAVADDPISEPLPEETRHTPPSPVIVSLPI
                     ADRQTSFVFYGEGLGLDAIGDPADDGVPEPLQFALNEGVHLMLVPTGGFSWVIGDREV
                     PGRDQSECIFSVHVGTEGGVDELIERAHQSGAEIVTQPGQQPWGYAGAFADPDGHIWM
                     VTSDSFPT"
     gene            complement(4711..5796)
                     /locus_tag="VF788_01665"
     CDS             complement(4711..5796)
                     /locus_tag="VF788_01665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932911.1"
                     /translation="MVHRIHAWDRTAFKRCRREWDLSSPNRRNLEPIARSSPVDLGQA
                     LREALAVYYFPGMWEWDRAIVQPLVHQALDRSVRGQIAADADGRTDEHAQQEALDWGH
                     ALLDAYAAWAPTVDDFTPIRVNTDFEANIPDPAAVGANLLTASGDEIRYCDRVDLLAI
                     DSDDAYWVLQHRLVTEAWADQHSLQLDEQTIAWSWAWPQFYLGMQISGTVYNEIRTDA
                     GELGVKAPPPAGRPPVHHRRMYARSGTVSGERLHTEGTDAFRRTHIRRGETELAAAGR
                     DLAVEVSMATSANLDVYPSPAPSICARCSYRVPCVMMNQGHDPTVELSQAYQQRPPES
                     LQEGRLGGVTWSMNRGAAPPPNWSHRS"
     gene            complement(5853..6143)
                     /locus_tag="VF788_01670"
     CDS             complement(5853..6143)
                     /locus_tag="VF788_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932912.1"
                     /translation="MITEIVADWPEPGEVVYIERRGESYTAKRAGTDGALPMPAPEDA
                     LPDAWIYYGGWQAHHRNDLSAFFDDLFAEMDAAAGGHDRCRWSADDPWPHAH"
     gene            complement(6180..7280)
                     /gene="hypE"
                     /locus_tag="VF788_01675"
     CDS             complement(6180..7280)
                     /gene="hypE"
                     /locus_tag="VF788_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEX8932913.1"
                     /translation="MHAAPGTEHTSREQLVLDRIDRARRARPRVREKLITLAHGAGGK
                     ATQSLIEAVFLDAFRNPLLEPLEDAATVTAGDVRLAFTTDSYVVSPLFFPGGNIGDLA
                     VNGTVNDLAVSGARPAHLSAGFILEEGFPVEDLRRIVASMAAAAAAAGVSIVTGDTKV
                     VQRGKGDGCYINTAGVGLMIDGLNLGVATARPDDVVIVSGPVGDHGITILLERGELDL
                     QADLVSDTAPVHELVHGLLDAVGPDVRAMRDATRGGVATILNEVAKAAGVAVVVEEEA
                     VPVRAEVRGACELLGIDPLYVACEGRIVTIVDPGAADAAVAALQAHPLGAGATVVGRV
                     AADPPGLVLLKTGFGGTRIIDLLVGDPLPRIC"
BASE COUNT         1231 a         2435 c         2409 g         1268 t
ORIGIN      
        1 atctgcggat acttccgcgg tttctccgcg ccctcggtga ccgaggtaat gacgacacgg
       61 gcctgttccc cgaggtcgaa cagcgccggg cagaccaggt tgccaacgtt ttcgatcagc
      121 accaccgagc cgtccggtgg atccagcgtc tccagcccac ctgcgagcat ctgcgcgtca
      181 agatggcagc cagatccggt gttgatctgt accgccgggg cgccggtggc gcggatccga
      241 tccgcgtcca ggaccgtctc ctggtcacct tcgatgactg atacacgcag ctcagcgccc
      301 agctcccgga tggttcgctc gagcagcgtg gtcttacccg ccccggggga actcatcaga
      361 ttcagcgcga ggatgccgtg ctccgccaac cacttacggt tgcgctcggc gagcttgtcg
      421 ttacgggcca acaccgcctg ctcgagggtg acggtgcggg tctcgggcgt ctggtgagta
      481 tggctgtggc catgcccgtg cccgtgatcg tgctcatgtc catgatcgtg atcatgttcg
      541 aggtccgcga ggacggtgtt tcctgagcag ccacacgtcg cgcacatcag gccattacct
      601 caacttcccg aatcttgagt tcttctcccg caaggagttc tcggttcgcg ctaccacagg
      661 cgcacagtac gaggaggtcg ttcagtacga actccgcgcc acagtctcgg cagcgggcct
      721 tccccgtagg ttgaacgatt tccaacgagg ctccctcgag cggggtgccc tcggtcacaa
      781 gatcgaagca gaaccgcacc gaatcggcca cgacacccga cagcgtgcca atctccaggc
      841 aaacccgtcg caccggcacg tcacccatcc ggtcgcacac ggcctggatc acgctttggg
      901 tgatcgccat ttcgtgcaag aagggtcctc ctcggctcga cgcccagtgc agtcccctgc
      961 ggagaccttg tcaaccgggg cgagagagaa tcatccaatg cagcattgta tccgggttga
     1021 ggtgcgggtt gagggcgttg tgcagggagt cgggttccgg ccttacatcc atggcttggc
     1081 gcaccgtctt gggctgtcgg ggcgagtcgg caatgacact gccggggtct tcatggaggt
     1141 cgagggagct gagcaggcag tcagtgattt cctggccgcg ctgccatcgg aggctcctcc
     1201 gctggccgtc atcgagcagg tgcggaccaa tccgctcact cccaccgggg agtcgggctt
     1261 ccacatcgtc tccagcaacg ccaccggccc acgagacacc ttgatctccg cggacaccgc
     1321 aacctgcgcc gactgccttc gcgaactggc cgatcccact gatcgccgct tcgactaccc
     1381 gtttatcaac tgcaccaatt gcggtccgag attcaccatc gtgcgtgacg tgccctatga
     1441 ccgcccgttc accaccatgg cgccgttcgc gatgtgctcc gcctgcgcca gcgagtacca
     1501 cgaccctacg gaccggcgtt tccacgctca gccggtgtgc tgcccggcct gcggaccccg
     1561 gttgcggcta ctcgacgccg gcggtgccga gctgcccggt gagccgctag ccgcggctgc
     1621 ggcattgctg accggtgggg ccgtgctggc ggtcaagggg ctgggaggtt tccacgtcgc
     1681 ggcgctggcc accgacgcct cagcgaccgc tcttttgcgg tcgcgtaagc accgtgaaga
     1741 caaaccgttc gcggtgatgg tggccgatct ggagaccgca catcagctgt gcgtgatcaa
     1801 tccggtgggg gagcaagtgc tggccggacg gcggcggccg gtggtgctgc tgccacgccg
     1861 cccagacgcc cgcgtcgcgc cagccgtttc gcccggcaac cgcagcctcg ggttgatgtt
     1921 gccctacacc ccgttgcatc atctgctgct gcgtgaggtc ggcggcccca tcgtgttgac
     1981 gagcggcaac gtctccgacg agccgatcgc ctaccacgac gacgacgcgc ggcagcgact
     2041 gaccggtatc gcggatgctt acttgaccca cgaccgagcg atccacatgc ggactgacga
     2101 ctcggtggtg cgagtattcc gcggcgccga gttgccggtg cgcaggtccc gaggctatgc
     2161 gcccgaacca ctcaccctcg cgcaacgggt gcccaggccg attctcggct gtggtgccga
     2221 gctcaagagc accttctgcc tggctcgtgg gcggcacgcg ttcgtgtcac accacatcgg
     2281 ggatctggag aactacgaga cgctacggtc cttcaccgag ggcgtggcgc acttccaacg
     2341 gctgtttgac ctgacaccgg aggtcgtcgc gtacgacctg cacccggagt atctgtcgac
     2401 caaatacgcg ctcgagctgg ctgacctgga actcgtaggg gtgcaacacc accacgcgca
     2461 catcgcctcc tgccttgccg acaacggcgc ggccggccca gtgctgggag tggccttcga
     2521 cgggacgggt tacggcagcg acggcacatt gtggggcggg gagttcctgc tggccgattt
     2581 gacgggattc cagcgaatgg cgcatctagt cccggtgcca ttgccgggcg gtgccgcggc
     2641 tatccggcaa ccctggcgga tggccgccgc ctacctgggc gatgacgcgc cgcccgaatt
     2701 gatccagcgc aacgcccagc attgggacgt tgtgcgggcg atggcgtcac ggcaggtgaa
     2761 cgccccgctc acttccagcg ccggacgcct gttcgacgcc gtcgcagccg tcctcgggat
     2821 ccgcgacgca atcaactacg aggggcaagc cgcgatcgag ctagaacaac gggccgacct
     2881 gaccgagcac ggaacctact ccgccacggt gaccgaaggt cccgcacttc aactgcacgg
     2941 tgtggatttg gtgcgcgccg cgctgaacga tctacgggcc ggggtagccc ccgaggcgat
     3001 cgccacccga tttcatcacg gcgtcgctga tgccatcatc cgggtctgcc tgatgctgcg
     3061 ggacgccaca ggggtgggcg tcgctgcgct gtccggcggc gtgttccaaa acattctcct
     3121 gctcgaacgc accgtggctg gcttggagcg atggggtttc cgggtgctta cccactcccg
     3181 ggtaccgccc aacgacgccg ggatcagcct cggccaggtc gccatcgccg ctgcatcctt
     3241 acgttctgag gattgatcgc actgagcacg agcgcggcga cgaacgcgcg gcgctagccg
     3301 tcgccgaggc cgccacccga ctcagcgggg cggacgcggt gccagaccag atctgggacg
     3361 aggccgccga ccgctacgac gagctggggc tcgcgggcat gatcaaggag gcggcaggca
     3421 cgacctggag ctgaggggcg gacgcaccgg aagcggcgcg gatccgcttc ggcccatggg
     3481 gagcaatgga acggtcgttt cccgacgctc gtgttcctca ccgtcaacag aacactcggg
     3541 agttggtcca cccaaaccat gaccatctca ttccggtttc tggtttacct tggctgaccc
     3601 ccctaattca tgcgcgagtc ccaagtgcgg cggcgaagtc ggcgtacggg tcggcggggt
     3661 cggcgatcgc tccgacgatg tggtcggggc ggatcagtgc gacgaattgc tcacggttga
     3721 agaaggtggt cagggtcgcg acgtccccgt tgaccattgg cagcccgagc gtgtcggcgg
     3781 tatctcgtgc ggcggggtgg tgaccggcga cgaggacacc gccggtgggc atcttggggt
     3841 agatgcgccg gccgtcgtcg gcgagggcgt ccgggaggcg gtgtccaaca cccgtcttcc
     3901 cgcgccgcag gaggcgggag tcgccgtagg caaggttgag catggagaac ttgctggtca
     3961 gtgacccagt ggatttgctg aatccgacga tggcgtcgag tgcgcggacc acgagaccgc
     4021 gcaatgggca cgacgaggga cggtcgaaga gctcggacaa gggcggccga ggatccgttc
     4081 accagcgcca aaccgagcgc ttcgatcaca gctcgggcca cggcttggtc accagcgaac
     4141 aagacaccgc ctgatgttca gccgcgatca cggccgcccg ctgtgctggg gtcgcgcagc
     4201 ggtcgccgat gaccctattt ccgaaccgct tcccgaggag actcgccaca cgccgccctc
     4261 gcctgtcatc gtcagcctgc cgatcgccga ccgccagact tcgttcgtgt tctacggtga
     4321 aggactcggc ctcgatgcca tcggcgaccc tgcggatgac ggagtacccg aaccgctgca
     4381 attcgccctc aacgagggcg ttcacctcat gctggtcccg accggcggct tcagctgggt
     4441 catcggcgac cgcgaggtgc cggggcgtga ccagagtgag tgcatcttca gcgtgcatgt
     4501 gggaaccgaa ggcggtgttg atgagctgat cgaacgcgcg caccagtcag gcgcagagat
     4561 cgtcacgcaa cctggacagc agccgtgggg ctatgcgggt gcctttgccg accctgacgg
     4621 tcacatctgg atggtgacat cagattcgtt ccctacatga ccgtggcgcg gaacccggtg
     4681 gcaccttcgt gctcggggct gtggagaggg tcaggatctg tgtgaccagt tgggcggtgg
     4741 ggcggcaccg cggttcatgg accaggtgac gccaccgaga cggccctcct ggagggactc
     4801 gggtggccgc tgctggtatg cctgagagag ttcgacggtg gggtcgtggc cctggttcat
     4861 catcacgcac ggaacacggt aggagcagcg tgcgcagatg ctcggtgcgg ggctgggata
     4921 aacgtcgaga ttcgcgctgg tggccatgct gacctcgacg gccagatccc gccctgccgc
     4981 ggcgagttcg gtctctccgc gcctgatgtg ggtgcggcgg aacgcgtcgg tgccttcggt
     5041 gtgcaatcgt tcaccggaaa cggtgccgct gcgggcatac atccggcgat gatgaaccgg
     5101 tgggcgcccg gcaggggggg gagctttcac tcccaactcg ccagcgtcag tgcggatctc
     5161 gttgtacaca gtgcccgaga tctgcatgcc gaggtagaat tgtggccacg cccaagacca
     5221 tgcgatcgtc tgctcgtcca gctggagtga atgctgatca gcccatgcct cggtaacgag
     5281 ccggtgctga agaacccaat aggcgtcatc ggagtcgata gctagcaggt cgacccggtc
     5341 acaatagcgg atctcgtcac cggaggcggt caacaggttg gcgccgactg ccgccggatc
     5401 ggggatgttc gcctcgaaat cggtgttgac ccggatcggg gtgaagtcat cgactgtcgg
     5461 tgcccaggcg gcgtaggcgt caagcagtgc atgaccccaa tccaacgcct cctgctgggc
     5521 gtgttcatcg gttcgaccat cagcatcggc cgctatctgg ccgcgcaccg agcggtccag
     5581 agcctggtgt acaagaggct gcacgattgc tctgtcccac tcccacatcc cagggaagta
     5641 gtacaccgcg agcgcctcgc gcagcgcttg gcccaggtcg acagggctgg accgagcgat
     5701 cggttcgagg ttccgccggt tgggcgagct cagatcccat tctcgacggc aacgcttgaa
     5761 tgccgtccga tcccacgcgt ggatgcggtg aaccatcgca cctcgactca atgcctgtga
     5821 cttcgcctgt ctggtaccgc agtccgcatg attcagtgcg cgtgcggcca agggtcatcc
     5881 gctgaccagc ggcaacgatc atgaccgccg gccgccgcat ccatttcggc gaacaggtcg
     5941 tcgaagaacg ccgacaaatc gttgcggtga tgtgcctgcc atccgccgta gtaaatccag
     6001 gcgtcgggca gggcatcctc tggcgcgggc atgggaagtg ccccatcggt gccagcgcgc
     6061 ttagccgtgt agctctcgcc ccggcgctcg atgtagacaa cctcgccggg ctcgggccaa
     6121 tcggccacaa tctcggtgat caactcatcc cggttcagcg gacctcccct gcgacatact
     6181 cagcagatcc gcggcaacgg gtcgccgacc agcagatcaa tgattcgggt gccgccaaac
     6241 ccggtcttaa gcaggaccag tccgggcgga tccgcagcga cgcggccgac cacggtcgcc
     6301 ccggcgccga gcggatgtgc ctgcagcgcc gcgaccgcgg cgtcggccgc gccagggtcg
     6361 acgatcgtca cgatgcggcc ctcacaggcg acgtagaggg ggtcgattcc cagcagctcg
     6421 caagctcccc gaacctccgc acgcaccggg actgcctcct cctcaaccac cacggccacg
     6481 cccgcggcct tggccacctc gttgaggatc gtggcaactc caccacgagt ggcgtcgcgc
     6541 atcgctcgga cgtccggacc caccgcgtcg agcagcccgt ggaccagctc gtgcaccggc
     6601 gcggtgtcag agaccagatc ggcttggaga tccagctcgc cgcgctccag caggatggtg
     6661 atgccgtgat cgcccacggg gccggacacg atcaccacgt cgtcggggcg agcggtggcg
     6721 acgcccaggt tcaggccatc gatcatcagc cccaccccgg cggtgttgat gtagcagccg
     6781 tcccccttgc ctcgttgtac gaccttggtg tcaccggtga cgatcgagac tccggctgct
     6841 gccgcggccg ccgccatcga ggccacgatc cgccggaggt cctcgacggg gaatccttcc
     6901 tccaggatga acccggcgga tagatgggcc ggccttgctc cggaaacggc cagatcgttg
     6961 accgtgccgt tgaccgccag atcaccgata ttcccaccag ggaagaacag cggtgacacc
     7021 acatatgagt ccgtggtgaa ggccagccgt acatcgccgg cagtgaccgt cgcggcgtcc
     7081 tccaacggct ccagcagcgg attgcggaag gcgtccagga agaccgcctc gatcaacgac
     7141 tgggtggcct tacccccggc gccgtgagcc agggtgatga gcttctcccg caccctggga
     7201 cgggctcgcc gcgcccggtc gatgcgatcc agcactagct gttcccggct ggtgtgctcg
     7261 gtcccgggtg cggcgtgcac gtcggtgtgg ccgccatcgt gctcggcgac aacggcctcc
     7321 gcccagtcag cccgctgctg ggt
//
LOCUS       DASVXZ010000088         2031 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1533896, whole genome shotgun sequence.
ACCESSION   DASVXZ010000088 DASVXZ010000000
VERSION     DASVXZ010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1533896"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VF788_01680"
     CDS             complement(<1..351)
                     /locus_tag="VF788_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932914.1"
                     /translation="MGPYETSRGNTENFPTAPPAHTLLCPGAPSISFTPVVQARHHLD
                     RADRFANLGYGSVFRLKPFRPHLTAGALSCATTPPDTTTHGHRTSPLNSAQRGITPAF
                     GYGPRLGPVRLDFHQ"
     gene            642..1901
                     /gene="ltrA"
                     /locus_tag="VF788_01685"
     CDS             642..1901
                     /gene="ltrA"
                     /locus_tag="VF788_01685"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR04416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEX8932915.1"
                     /translation="MSQVVRKRVQVQKAHSLIGQVYDPRNLARAWVRVKENRGAGGVD
                     RISIDRFEREHRRYLTVLHQRLAEGSYRPLPVRRVEIDKPGSRAKRPLGIPAVVDRVC
                     QQALRQVLEPIFEPTFSEVSFGFRPGRSAHMAMRRIWSQMQAGGRWIVDADIADFFGT
                     ISHDRLVALVAQRVADSKVLSLIRQILAAGVLRDGVYESTIAGTPQGGVISPLLSNIY
                     LHVFDEQMQRAGFQLTRYADDWLCVCQTREEAERALASARAVLEGQLGLRIHPEKTRI
                     VHVSQGFEFLGYKIGLGRGLRFKPGGTGLYAIPRQRSIDRFKDKVRALTRRRIAVPLE
                     ELIYALNPVIRGWGVYYRRANVRRLFNRLNRWIVRRIWGWRFKRWRNAGWRTLPETRL
                     YGEYGLVNLLQLIPSMRDYYRQKGYTH"
BASE COUNT          410 a          507 c          731 g          383 t
ORIGIN      
        1 ctggtgaaag tccagtcgga ccggccccaa gcggggtccg tagccgaagg cgggggtaat
       61 gcctcgctgg gcgctgttga gaggcgaggt gcggtggccg tgggttgtcg tgtctggcgg
      121 agtggtggcg caggacaggg cgcctgccgt gaggtggggt ctgaagggtt tgaggcgaaa
      181 caccgagccg tagccgagat tggcgaaccg gtcggcccga tccaggtgat gccgagcctg
      241 cactacaggg gtgaaggaaa tacttggggc gcctgggcac aacaaggtgt gtgcgggcgg
      301 cgcggtggga aagttctctg tgttaccccg ggaggtctcg tacggtccca ctcgacggag
      361 tgggtagctg ggcgtataag ccgcgaggtg aaatcgcaag cgatgccgtg cgagaagtcg
      421 gagtggtcca cggtactgat gaaccaagga acaacagaaa ccttgggact gtcgtgttga
      481 tgcggcagcg ggcagtgact caaaaggcac cgacccgggg aaggggccac ggtgggaatg
      541 gtgaacttga tgcgaatcga gtgagtaggt ggcgacggac tgatggttgc tgaggcaatg
      601 accgagacga cgtcggccga ggatactcgg gatggcatgt ggtgagccag gtagtgagga
      661 aacgtgtgca ggtgcagaag gcgcactcgc tgatcggaca ggtttatgac ccacgtaatc
      721 tagcacgagc gtgggtgcga gtgaaagaaa accgaggcgc cggtggggtg gatcggatca
      781 gtattgaccg gttcgagcgt gagcaccggc gttatctcac agtgttgcat caacgactag
      841 cggagggcag ttatcgccct ttgccggtac gtcgggtgga gatcgacaaa ccagggtcga
      901 gggctaagcg cccgttgggt attcccgcgg tggtggaccg ggtgtgccag caggcgttgc
      961 gtcaggttct ggaaccgatt ttcgaaccga cgttttccga ggtcagcttc gggtttcggc
     1021 ccgggcggtc ggcgcatatg gctatgcgtc ggatctggag tcagatgcag gccggtggaa
     1081 gatggatcgt cgatgccgac atcgccgatt tcttcgggac aatctcgcat gatcgactcg
     1141 tcgccctggt ggcccaacga gtcgccgaca gcaaggtgtt gagcctgatt cgtcagatac
     1201 tcgcggccgg agtactgcga gatggcgtct atgagagcac aatcgctggc acgccacaag
     1261 gcggggtcat cagtccgttg ctcagtaata tttatctgca cgtttttgac gagcagatgc
     1321 agcgggcggg attccagctc acgcgctacg ccgacgattg gctgtgcgtg tgccagactc
     1381 gcgaggaagc ggaacgggcg ctggcgagcg cccgtgcggt gctagaagga cagctcgggt
     1441 tacgaattca tccggagaaa accaggattg tacacgtcag ccagggattc gagttcttgg
     1501 gttacaagat cggcctgggt cgggggttgc gcttcaagcc aggtggtact ggcttatatg
     1561 cgatacctcg gcaacggtcg atcgatcggt tcaaggacaa ggtgcgggcg ctcacgcgac
     1621 gccgcatcgc ggtgcccctg gaggagctga tatatgccct gaacccagta atcaggggat
     1681 ggggcgtcta ctatcggcgc gcaaatgtgc gccggttgtt caaccggctc aataggtgga
     1741 tcgtgcgacg aatctggggt tggcggttta aacgatggcg taacgccgga tggcgaacgc
     1801 taccggagac acgcctctac ggtgaatacg ggctggtcaa ccttctgcaa ctgattccca
     1861 gcatgcgcga ctactatcgc cagaagggct acacccattg agagccgctt gcgggaaaac
     1921 tgcatgagcg gttcggtagg gcgggcggag gcagcggacc actaatgtct gccacctccc
     1981 ccgacccgac acctgcgaag ccggtgaaca aggtcgcgca tgcggcggtg g
//
LOCUS       DASVXZ010000089         2845 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_368817, whole genome shotgun sequence.
ACCESSION   DASVXZ010000089 DASVXZ010000000
VERSION     DASVXZ010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368817"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..123)
                     /locus_tag="VF788_01690"
     CDS             complement(<1..123)
                     /locus_tag="VF788_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8932916.1"
                     /translation="MSTLSELLGRHTQLPGAAVGHLQRIVAEWQLLADLAFADLL"
     gene            complement(169..384)
                     /locus_tag="VF788_01695"
     CDS             complement(169..384)
                     /locus_tag="VF788_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding carrier protein"
                     /protein_id="HEX8932917.1"
                     /translation="MTEEIRAEMVANVWKVVVAEGDVVSDGDTLVILESMKMEIPVLS
                     EVDGTIAKLAVSEGDVVQQGDLIAVVE"
     gene            complement(657..1022)
                     /gene="rsrA"
                     /locus_tag="VF788_01700"
     CDS             complement(657..1022)
                     /gene="rsrA"
                     /locus_tag="VF788_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol system anti-sigma-R factor"
                     /protein_id="HEX8932918.1"
                     /translation="MSCGDPHETDCHQVLAELWLFLDNECNRERRELLRRHLDECGPC
                     LEEFGLEEHLKALLARKCGGDHAPDALKQRLRESIREIMMRQAVLSAEVTVQRDDNGT
                     VVEVSTSTVESHAWLTTES"
     gene            complement(1019..1744)
                     /locus_tag="VF788_01705"
     CDS             complement(1019..1744)
                     /locus_tag="VF788_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8932919.1"
                     /translation="MSADSAEPTQFGESPSSPERTVVPGVPKAAAQELPPSEAADRGV
                     EDPEETPQQRTARFERDAMPMLDQLYAAALRMTRNPADAEDLVQETYLKAYGAFGSFR
                     AGTNLRAWLYRILTNTYINGYRKRQRQPLAQPTEEITDWQLAQAAQHTSSGLRSAEMD
                     ALDRLPDSAVKEALSQLAEDFRMAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRK
                     QLRDMLTGEARERGFLRDAEVAS"
     gene            1984..2406
                     /locus_tag="VF788_01710"
     CDS             1984..2406
                     /locus_tag="VF788_01710"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEX8932920.1"
                     /translation="MAGQSTPATTLLNRCGVGYRLRTYIQNSRANSCGTEAAEALGLA
                     PEQVFKTLIAELDGRLIVAVVSVGAQLDVRALAIAMGAKKCRMTAVASGWDDWVGGER
                     PVIHAAWLTIPQKQRPVGGAAGAVTTARPGGPALRDLL"
     gene            complement(2312..2845)
                     /locus_tag="VF788_01715"
                     /pseudo
     CDS             complement(2312..2845)
                     /locus_tag="VF788_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016701268.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
BASE COUNT          500 a          978 c          882 g          485 t
ORIGIN      
        1 cagcagatcg gcgaaggcca gatcagcaag caactgccac tcggcgacga tccgctgcag
       61 gtggccaacc gccgcgccgg gcaactgggt gtgccggccg agcaactcgc tcaacgtcga
      121 tatggcggct caccacctcg ccggcggaga tctcatccgc agttgacgtt attcaaccac
      181 ggcgatcaaa tcaccctgct gcacgacgtc accttccgag acagctaact tcgcgatcgt
      241 tccatcgacc tcggacagga ctgggatctc catcttcatc gactcgagga tcaccaacgt
      301 gtcgccgtca gagaccacgt cgccctcggc gaccacgacc ttccatacgt tggccaccat
      361 ctcggcccgg atctcctcgg tcatgtatcg ccctcctcga cgttgtgccc tgtatccaac
      421 catggtgatc tacccactcc tgcgcagcca tagtgcgtcg tggcacactc gccacgaccg
      481 caacggggcc acccagatca ccgagcagat cgatcactcc agagacgagg caccatgtct
      541 aaaaagggcc ggaagaagcg cgcccggaag aagaacgccg ccaaccacgg taagcgtccc
      601 aacacctgag gcagggctgc gggccggccg cgacgtcggc gggcccgcag cgcagctcag
      661 ctctctgtgg tcaaccaggc gtgcgactca acggtgctgg tggagacctc cacaacggtg
      721 ccattgtcat cgcgctggac cgtcacttcc gcgctgagga cggcttggcg catcatgatc
      781 tcgcggattg attcgcgcaa tcgctgcttg agtgcgtcgg gtgcatggtc cccgccgcac
      841 ttgcgggcca gcaatgcctt gagatgctct tcgagaccga attcctccag gcacggacca
      901 cactcgtcca ggtgacgccg gagcagctcc cgccgctcgc ggttgcactc gttgtccaga
      961 aacagccaca gctcggcgag cacctggtga cagtcggtct cgtgcggatc tccgcagctc
     1021 atgacgcaac ctccgcatcg cgcaggaacc cccgctcgcg ggcttccccg gtgagcatgt
     1081 cgcgcaattg cttgcgtccc cggtgcagtc gcgacatcac agtcccgatc ggggtgccca
     1141 tgatctcggc gatctccttg tacgcgaatc cttcgacgtc ggccaggtaa acagccatcc
     1201 ggaagtcctc cgccagctga ctcagcgctt ccttgaccgc agagtcgggt aaccgatcca
     1261 atgcgtccat ctccgccgaa cgcagacccg atgaggtgtg ttgcgcggcc tgcgcgagct
     1321 gccaatcggt gatctcttca gtgggttgcg ccaacggctg ccgctgccgc ttacggtacc
     1381 cgttgatgta ggtgttggtg agaatccggt acaaccacgc cctcaggttc gtgcccgcac
     1441 ggaatgaccc gaatgcgcca taggccttga ggtaggtctc ctgaaccaga tcctcggcat
     1501 cggccgggtt gcgggtcatc cgaagtgccg ccgcgtagag ctggtcgagc atgggcatcg
     1561 cgtcgcgctc gaagcgcgcc gttcgctgct gcggcgtctc ctctggatct tcgacgccgc
     1621 ggtcggcggc ctccgagggc ggcagctctt gggccgccgc cttggggacg cctggcacga
     1681 ctgtcctttc ggggctcgat ggggactcac cgaactgcgt aggctcggcg ctgtcggctg
     1741 acatcactcc gaccaccccc atgcccaggt ctgcattgat ggtcgagagt acgcgccaac
     1801 cggacgtctg gcccaatgaa gggcatccgg gctggcacgg ctcccggtcg gtgatccggt
     1861 agtgagcttg ctgggttgtc gtaaccacgg ccccactaac gccctgcccg ctgcccgcat
     1921 tccacgacgt gatcacagac tgtgcgccat ggccggcacc agcacgcctt agcatggacc
     1981 aggatggcag gacagagcac cccggcgacg acgttgctga accgctgtgg cgtcggttac
     2041 cggctccgca cctacattca gaattctcgc gccaactcct gcggcaccga ggcggccgaa
     2101 gcactcggct tggccccaga gcaggtgttc aagaccttga tcgccgagct ggacgggcga
     2161 ctgatagtcg ccgtcgtgtc ggtcggcgca cagctcgatg tgcgtgctct cgctatcgcg
     2221 atgggtgcta agaaatgccg aatgacagcg gtggcgagtg gttgggatga ctgggtaggc
     2281 ggtgaacgac ccgtcatcca tgcagcctgg ctcacgatcc cccagaagca acgtccggta
     2341 ggtggcgcag ctggcgccgt aaccactgcc cgacccggtg gcccagcgct gcgagatctg
     2401 ctttgagcga atggtcaccg gcgagcagca cgacttcgcg tcgagtcgcg ggttcggggc
     2461 gaccgaaggg atcgcgttcg ccctgcacga tgagcaccgg cagctccagc ccgtccagct
     2521 cgttcatccg gctgcgatcc ggccgcccgg gtggtgcagg gggaacgcga gacacagaac
     2581 tgcgacggca ccccccgcta acgcggtccg gcaggccact ctggccccgg aggaacgtcc
     2641 gccgaagatg aagggcaggt cggtgaacat tcccttcgcg agatagccgg cgacggccag
     2701 ccacgcctcg tccaactgcc gggccggcgc cggggcacgc cgacccgcga cccggtaagg
     2761 ctgggtgacc agcgccacgt gcaccccggc cgctctcgcc gccctggtgg tggcgtcgag
     2821 gtccggtgca ctgatcgaac cgccc
//
LOCUS       DASVXZ010000090         2399 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1175612, whole genome shotgun sequence.
ACCESSION   DASVXZ010000090 DASVXZ010000000
VERSION     DASVXZ010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175612"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..419
                     /locus_tag="VF788_01720"
     CDS             <1..419
                     /locus_tag="VF788_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8932921.1"
                     /translation="GYALYAPPAAVPRASAFPTSPVSADAVLLTALKVLPEFGGGGLG
                     RILVQAVAKDLTRRGVKAIEAFGDAQPNQNSSCVVPAEFLQQVGFKTVHAHHRWPRLR
                     LELRTALTWKEDVEAALERLLGSVTIHAVEPSLRPA"
     gene            644..1837
                     /locus_tag="VF788_01725"
     CDS             644..1837
                     /locus_tag="VF788_01725"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEX8932922.1"
                     /translation="MLRQLRIGSAMAASAVAIACAAPSPAPTAPASAPPPAPTQQPST
                     PPPVSCAQATLDMMSPRARVGQLFLLGVPASGIDPLASTIDRHTPGGVFLTGRSAAGV
                     QATAGTIAPIQRRAAEANGGIGMFVATDQEGGQVQVLSGPGFSRIPSATVQGSWKPEV
                     LQAAATGWGRELRAAGVNVNLAPVADVLSPALGAENAAIGRYDRAFGTDPQVVSDHVL
                     AFARGMGEAGVVSTAKHFPGLGAVRGNTDFSAGVVDRHTTATDPDLLPFSSASEAGTP
                     WLMMSSAVYSKLDASRAAAFSPAVVTDLLREQIGFRGLIVSDDLGRAVQVAAIVAGER
                     AVRFLAAGGDIVLTADPATLGPMIDAVLSAATDDPEFAARVTDSQRRILEAKSHAGLL
                     PCSDR"
     gene            complement(1855..2022)
                     /locus_tag="VF788_01730"
     CDS             complement(1855..2022)
                     /locus_tag="VF788_01730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932923.1"
                     /translation="MSSVEVPDNDAIEQHMPLDDVEDGPEDLPTEVDPADAVDQYREV
                     GADDAEDYPPA"
     gene            complement(2042..>2399)
                     /locus_tag="VF788_01735"
     CDS             complement(2042..>2399)
                     /locus_tag="VF788_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003065812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HEX8932924.1"
                     /translation="TFRDAGGGAKPAQAGLKVCWADTEEKGVATVHRLWPNEGLPGVA
                     QTLPTPRDFEAITQLVTEEMVRNTVVCGPDPQRHLDKVGEYIDAGFDEIYVQQIGLDQ
                     EPFFEHWATEVLPHLA"
BASE COUNT          371 a          808 c          793 g          427 t
ORIGIN      
        1 ccggctacgc gctttacgct cccccggcgg cggtgccccg ggcgtcggcg tttcccacct
       61 ctccggtcag cgctgatgcg gtactgctca ccgcgctgaa ggtactgccg gagttcggtg
      121 gcggcgggtt gggccggata ctggtgcagg cagttgccaa ggatctcacc cggcgcggcg
      181 tcaaggccat cgaggccttc ggtgatgccc agcccaacca aaattccagc tgcgtggtcc
      241 ccgccgagtt cctgcaacag gtcggcttca agacggtgca cgcgcatcac cgctggcccc
      301 ggctgcgcct ggaactgcgc accgcgctga cctggaaaga agacgtcgag gcggccctgg
      361 aacggctcct gggttcggtt accatccacg ccgtcgaacc cagtcttcgc cccgcctgac
      421 cgggtgccac ccgtcagctg tgctgccgcc ccctgcgagt aggcgtgccg tggtaaccat
      481 ggaatgctga tcgcgcaatt gggaaaggat tgccccacga tcatgggaca cgatcggacg
      541 gacccaacgc tggtgatctc ctaccggaca ggacgggtgg ggtgtgacgt ccgggtccgg
      601 cgtgcccagc ctggcgtccg ccggatcgtg ctgagctgac ggggtgcttc gacagctacg
      661 gatcggtagc gcgatggcgg cctccgcggt ggcgatcgcc tgtgcggcac cgtcacctgc
      721 gccgaccgca ccggcttcgg caccgccacc ggcacccacc cagcagccct ccaccccgcc
      781 gccggtgtcc tgcgcgcagg cgaccctgga catgatgagc ccacgagccc gggtgggtca
      841 gctgttcctg ctcggggtac ctgcgtccgg gatcgacccg ctggcatcga cgattgaccg
      901 gcacactccg ggtggagtat ttctgaccgg ccgcagcgcc gcgggtgtcc aggccacggc
      961 tggcaccatc gcgccaatcc agcgacgtgc cgcagaggca aacggcggga tcgggatgtt
     1021 tgtcgcgacc gaccaggaag gtggccaggt tcaggtcctg tccgggcctg gattctcccg
     1081 gatcccgtcg gccacagttc agggcagctg gaaacccgag gtgttgcagg ccgccgcgac
     1141 cggctggggg cgtgagttgc gggccgcagg tgtcaacgtc aatctcgcgc cggtggcaga
     1201 cgtgctctca cccgcactag gcgccgagaa cgcggcaatc ggccggtatg accgggcgtt
     1261 cggcaccgac ccgcaggtgg tctcggacca cgtattggcc ttcgcccggg gcatgggcga
     1321 ggcaggcgtg gtcagcacgg caaagcattt tcccggtctt ggcgcggtgc ggggcaacac
     1381 agatttctcc gcaggcgtcg tggatcggca cacgacggcg accgatccgg acctgttgcc
     1441 gttcagcagc gcatcggagg cgggaacacc ctggttgatg atgtcctcgg cggtctattc
     1501 gaagctcgac gcaagccgtg ccgccgcgtt ctccccggcg gtcgtcaccg atctgctccg
     1561 ggaacagatc ggcttccggg ggctgatcgt gtccgacgac ctgggccgag ctgtgcaagt
     1621 cgccgccatt gtggccggag aacgcgcggt gaggttcctt gctgccggtg gagacatcgt
     1681 gctgaccgct gaccctgcca cccttggccc gatgatcgat gccgtacttt ccgctgccac
     1741 cgacgaccct gagttcgccg cgcgcgtcac ggactcgcaa cgccgaatcc tcgaggcaaa
     1801 aagccatgcc ggtctcttgc cctgctcgga ccgttagcgc gcctgcccgt cagctcaggc
     1861 tggtggatag tcctccgcgt cgtcggcacc gacctcgcgg tactggtcta ccgcgtcggc
     1921 cggatcgacc tcggtgggca ggtcttcggg accgtcctca acatcgtcaa gtggcatgtg
     1981 ctgctcgata gcgtcattat ccggcacttc aacactgctc atggcgcttc cttagtgatc
     2041 gctacgcgag gtgggggagt acttcggtgg cccagtgttc gaagaagggc tcctggtcga
     2101 ggccaatctg ctgcacgtaa atctcatcga aaccggcgtc aatgtactcg cctaccttgt
     2161 cgagatggcg ctgcggatca ggaccacaga cgacggtgtt acgcaccatc tcctcggtca
     2221 ccagctgggt gatcgcttca aagtcccgag gggtggggag ggtctgggca acgccgggaa
     2281 gtccttcatt gggccacagc cggtgtaccg tggccacgcc cttctcctcg gtgtcggccc
     2341 agcacacctt cagaccggct tgcgccggtt tggcgccgcc accagcgtcc cgaaacgtt
//
LOCUS       DASVXZ010000091         3093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_817236, whole genome shotgun sequence.
ACCESSION   DASVXZ010000091 DASVXZ010000000
VERSION     DASVXZ010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817236"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            288..470
                     /locus_tag="VF788_01740"
     CDS             288..470
                     /locus_tag="VF788_01740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932925.1"
                     /translation="MAEATQFDPERLRLTLDNGEEMELNGDTLGLDGEVAISCFVYTQ
                     LRPDILAKIDALAVLE"
     gene            complement(696..1466)
                     /locus_tag="VF788_01745"
     CDS             complement(696..1466)
                     /locus_tag="VF788_01745"
                     /inference="COORDINATES: protein motif:HMM:NF021371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HEX8932926.1"
                     /translation="MLFDVFTAGNTDVMAGAIPEERVTWPVAHQRWQAFTFLHWAYDP
                     AEVQRLLPSELQVHTHDGLAWVGLTPFLLSDFHPPGLPAIPGLSTFPETNLRTYVLNS
                     NGLDGLWFFSLDADELATVLGARALLQVPYQWAAMSVKTGSTVTYRSRRRWSPRARHD
                     IVVQPGAPLAVEELVERDHFLTGRWRAFTKIAGRMVTVPVEHQPWPLWSVRVDQLNQD
                     LLTAAGLPAPQGEPLAHYSPGVDVRLGPPRWSVLSTRR"
     gene            complement(1612..2853)
                     /locus_tag="VF788_01750"
     CDS             complement(1612..2853)
                     /locus_tag="VF788_01750"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8932927.1"
                     /translation="MSRHTMSRREASGMGLPGLRAHRLRSAMTMLSLIIGVSAVILLV
                     ACGYGVKNSVNARVETMANQIGIVPKAADVPGGPPARNLTDADASALQDAPDVAAVTP
                     SINSSGIMIATGTVKLISATTIGTTENWPATNNRVLTAGSFFDQTQGRQAARVTVVGP
                     TVANTLFADPAAALNQTVQINHVPFRVIGVLASYGEQEDNTAVVPLGTARRYIVGTGN
                     TLNGITAQATQQAAVPAAMTQLTRILDDRHHITDPQLRDFQVQSLGHRLQTFNQIVRL
                     LVLFIPVIAVSLLVVGGIGVLNIMLASVTDRTREVSSREASDTTSRAIHKQVLIESVV
                     LAGLGGLIGVGVGIGLILLIQAVAPAFDPSGALAGFTPVLSIQPLLVAFAISLLIGLI
                     AGSYPAYRAARPHPTQPLTYQ"
BASE COUNT          579 a          875 c         1057 g          582 t
ORIGIN      
        1 gcccacctgg tccgggtcta tcacgagtag tgaaccctgt tgcggctgtc acccgcggtg
       61 agctccttgg tcattcgaga tggccatatg gcggaagacc acgcttgaac ggcagcgtat
      121 tggtacctgg ggcaaccgct cctgcttctg gcacctatgt gcgggtgatc tgggtcttgc
      181 tatcgggcgg ttgaccgagc tgacccggca aaggaccagc cgtgatggtt cgcaatatcc
      241 gctgttgatc agtggcgcac tgccccaatt agccggtgcg cgacccgatg gcagaggcta
      301 cgcagttcga tccagagcgg cttcggctga ccctggataa tggcgaggag atggaactga
      361 acggcgacac gctcgggctg gacggcgagg tggcgatcag ctgctttgtt tacacacaat
      421 tgcggccaga cattctcgcc aagatcgacg ctcttgccgt gctcgagtaa aacgccatga
      481 caacctagct gggcgctgcg actccccacc gggctgccac aggcagttcg aaggcaattc
      541 cttgaccagc acgccaaacg ctggacaaac cagcacaacg ccaaccgaca ccgacagagc
      601 ggataaaacc atcaaccaga tcgacgcaag ctgatccgtc ctggtgcatc cgatcggcgt
      661 aacgcaggct catggtgccg gtgccggcca tcgggttatc gtcgcgtcga caacaccgac
      721 caccgaggcg gccccaaacg aacatcgacg ccaggcgagt agtgcgcaag cggctcgccc
      781 tggggggcgg ggaggcctgc ggcggtaagc agatcctggt taagctgatc aacccgcacg
      841 ctccacagcg gccatggttg atgttccacc ggcacggtga ccatccggcc tgcgatcttg
      901 gtgaacgctc gccagcgtcc ggtcaggaag tggtcccgct ccacaagctc ttcgacagct
      961 agcggtgcgc cgggttgcac cacaatgtcg tggcgtgccc ttggcgacca ccgccgccgt
     1021 gaccggtagg tgaccgtgga gccagttttc acgctcatgg ccgcccattg gtagggaacc
     1081 tgtaataagg ctcgggcgcc taggacagtg gccagttcgt cggcgtccag ggagaaaaac
     1141 cacaggccgt ccaacccgtt gctgttcaag acgtaggttc gaaggttggt ctcggggaag
     1201 gtggacaacc ccgggatggc gggcagcccc ggtgggtgaa agtcggagag cagaaacggg
     1261 gtcagtccca cccaggcgag accgtcatgg gtgtgcacct gcagctcaga agggagtaag
     1321 cgctgcacct ccgctgggtc gtaggcccaa tgcaggaagg taaatgcctg ccaacgctgg
     1381 tgggctaccg gccaagtcac ccgctcctcg gggatcgcac cggccatgac atcggtgttc
     1441 ccagccgtga agacatcaaa caacataaga ctgtttatcg ggcgacacag tagtggttgg
     1501 gtttgatggg gaacgcaggt acgtggcgtg gacagtttcg ttacgcaggg gcagcgttgg
     1561 caccatcgca ggacgacgcc gataggcgct gcagcggggg agcgcggtgt gttattggta
     1621 tgtgaggggt tgggtggggt gtggtcgggc ggcacggtag gcggggtagc tgccggcgat
     1681 gaggccgatc aggaggctga tcgcgaatgc tacgagcaat ggctggatag ataagacggg
     1741 ggtgaacccg gccagggctc ctgaggggtc gaaggctggt gcgaccgctt ggatgagcag
     1801 gatcagtccg attccgactc cgacgccgat gagccctccg agtccggcca ggacgacgga
     1861 ttcgatgagg acctgtttgt ggatggcgcg gctggtggtg tcgcttgctt cgcggctgct
     1921 gacttcgcgg gttcggtcgg tcacggaggc cagcatgata ttcaggacgc cgataccgcc
     1981 gacgaccagc aggcttaccg cgatgaccgg gatgaacagg acaaggaggc gcacgatctg
     2041 gttgaaggtt tgcagccggt gtcccaggga ttgaacttgg aagtcccgca gttgggggtc
     2101 cgtgatgtgg tggcggtcgt cgaggatgcg ggtgagctga gtcatggcgg cgggcacggc
     2161 tgcctgttgg gtggcttgcg cggtgatccc gttgagtgtg ttgccggtgc cgacgatgta
     2221 gcggcgggcg gtgcccagcg gcacgaccgc ggtgttgtct tcttgctcgc cgtagcttgc
     2281 cagcacaccg atgacccgga aaggcacatg gttgatctgg actgtctggt tcagcgctgc
     2341 ggcgggatca gcgaagaggg tgttggcgac ggtaggaccc acgaccgtca ctctggcggc
     2401 ttggcggccc tgagtctggt cgaaaaacga ccctgcggta aggacccggt tgttcgttgc
     2461 aggccagttt tccgtggtac cgatggtggt cgccgagatg agcttgacgg ttccggtcgc
     2521 gatcattatt cctgagctgt tgatggatgg ggtgacggcg gcgacgtcgg gtgcgtcctg
     2581 cagtgcggag gcgtcggcgt cggtcaggtt ccgggcgggt ggccccccgg gaacgtcagc
     2641 ggccttcggc acgatgccga tctgattggc catcgtttcg acgcgcgcat tgaccgagtt
     2701 cttcacccca tagccgcagg cgaccagcag aatcaccgcc gaaaccccga tgatcaggct
     2761 gagcatggtc atcgcggagc gcaaccggtg ggcgcgcaac ccgggtagcc ccatgcctga
     2821 agcctctcgc cggctcattg tgtggcggct cattgtggcc tcccccggct ctgcggcacc
     2881 gcccgtcaag gacagtccta tagagataac cgatcatcga cgctgtacgc aaggagttca
     2941 gcgaatttct tccgatcatc acaatgcgta tgttgtccct agcttcgctg tacataggag
     3001 atagcgcatc ggagtcatta gcgagcgcag cgtgctcggt tgcgcccgcg ggatgatggg
     3061 taagtgattc ctgactacca cgacacggtc tga
//
LOCUS       DASVXZ010000092         5666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1713561, whole genome shotgun sequence.
ACCESSION   DASVXZ010000092 DASVXZ010000000
VERSION     DASVXZ010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5666
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713561"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..996
                     /locus_tag="VF788_01755"
     CDS             <1..996
                     /locus_tag="VF788_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2786 domain-containing protein"
                     /protein_id="HEX8932928.1"
                     /translation="SYLVDAIADQTQRYAKATVPQRWLDDLRHMGAVVWWEPDQTGGH
                     LVQWAWRHGARMAEALSTVIEVLALLLTLPALPRIGPPPGFAAASATPRRGVDQKMLA
                     RVRALLAKAESTTFPEEAEALSAKAQELMSRYSLERIVIDSTASAGNVLDPHPAAARR
                     LWLDNPYVAAKAMLVGAVAEANRCRTVLSEKLGFTTVLGDEVDLEIVELLSTSLLVQA
                     TRAMVSAGSQTSRTGRSRTRSYRQSFLLAYATRVGERLNTAREAGTAAVADPARLLPV
                     LAARERVVDELFESMFPESVARSFSVGNAAGWHAGRAAADLAVLDTRRAVASGGN"
     gene            complement(997..1983)
                     /locus_tag="VF788_01760"
     CDS             complement(997..1983)
                     /locus_tag="VF788_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020643047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8932929.1"
                     /translation="MLVVVVFAMIGALVIGILIGRRTGLVAPRSLAGTAPHQIEHHGV
                     VPGKDRAELVLASPPAEPGLVCGVRPEDPAPDKSDTARLDDEVRGDFVANVSHELKTP
                     VGAVALLAEAVLEAAEEPQEVRRFTTKILNEANRLGALVTELIVLSRPQSAERLPELA
                     TVEVDEVVHEALDRCRLAAESANIRITVDAPSGLLVKGDATLATALSNLLANAVAYSP
                     SGSTVSVSRQLVNGLVEIAVTDRGLGIAPEHQQRVFERFFRVDQARSHSTGGTGLGLA
                     IVKHVAANHGGNVHLWSKPGTGSTFTLRIPACPDHSQHRSPTASTLQCVGGT"
     gene            complement(2191..2457)
                     /locus_tag="VF788_01765"
     CDS             complement(2191..2457)
                     /locus_tag="VF788_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932930.1"
                     /translation="MTTWVAVSAVRETHHEGLDGMISADEYLSQSNFRTHGFIREALQ
                     SAGEEPKSSSRGGMTETSTRDDEGLYPSHVPGIVLCCLDNVEGT"
     gene            2937..3668
                     /gene="yaaA"
                     /locus_tag="VF788_01770"
     CDS             2937..3668
                     /gene="yaaA"
                     /locus_tag="VF788_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEX8932931.1"
                     /translation="MLVLLPPSESKASGGDGPALKLDSLAHPDLTPVRRKLIDELVAL
                     AGDVPAGLLALKLSERQRSELERNASLWTASTLPALRRYTGVLYAALDPSSLRPAQRA
                     RLVVASALFGLLSAEDSIPFYRLSAGSALPALGSVRSIWRPVLGPALAAIAGPVVDLR
                     SGGYTALAPAPGAVTVQVTSEDGHGRRRVVSHHNKSHKGRLARLLATAPRAVSDADGV
                     ARIARRGGLRVHRIGEHTLELVVPA"
     gene            4088..5539
                     /locus_tag="VF788_01775"
     CDS             4088..5539
                     /locus_tag="VF788_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1634 family transposase"
                     /protein_id="HEX8932932.1"
                     /translation="MRIVHGSRRGSRTIEHVGSAHDELELEALKAAARQRLASGQAQL
                     DLGLDAAAAAGSSGPLEIVASRMGHLWDGLGRAYDLLGFARAAGGDEVFRQLVLARII
                     EPTSKADSLRVLAEVGVDAVSYPTLNRHLPGYATEQFRRKLAAACARHAQLGPASLVL
                     YDVSTLYFETDAGDGFREPGFSKERRLEPQITIGLLTDAAGFPLMVEAFEGNAAEATT
                     MLPIITAFMAAHQLADVTIVADAGMISAANQRAIEAAGLSFILGMKVPDIPYGVAEWR
                     REHPDEPMPDGLILTQPRPAGPADKRRDQIVYYQYKTDRARRTLRGIDEQVVKAEKAV
                     AGKVPVKRNRFIKLVGADKSVNRTLEVKARALAGWKGYITTVPGASAEFVIGAYHRLF
                     EIEASFRMSKHDLTARPIYHHKRESIEAHLSIVFAALAVGRLVGDRTGWSIRKFVRTA
                     RRYRTVQIRTGQHLLTAEDPLPDDLREALAHIT"
BASE COUNT          947 a         1882 c         1873 g          964 t
ORIGIN      
        1 agctatctcg tcgatgccat cgccgatcag acccagcgtt acgccaaggc caccgtcccg
       61 cagcgctggc ttgacgatct ccggcacatg ggcgcggtgg tgtggtggga gcccgaccag
      121 accggcggtc atctcgtgca gtgggcctgg cgccacggcg ccaggatggc ggaggcactc
      181 agcacagtga tcgaggtact ggcgctgctg ctgacactgc cggcgctgcc cagaatcggg
      241 ccaccgccgg gattcgccgc cgcctccgcg acgccgcgcc ggggggtgga ccagaagatg
      301 ctggccaggg tgcgggccct gctggccaaa gctgagtcaa ccactttccc tgaggaagcc
      361 gaggcactgt cggccaaggc gcaggaactg atgagccggt actcgctgga gcggattgtc
      421 atagacagca ctgcaagcgc aggcaacgtt ctcgatccgc atcccgccgc cgcccgccgg
      481 ctgtggctgg ataacccgta cgtcgcagcg aaagccatgc tggtaggtgc agtggccgag
      541 gcgaaccggt gccggaccgt attgtcggaa aagctcgggt tcaccacggt gctcggtgac
      601 gaggtcgacc tggagatcgt tgagctgctc agcacgtcgt tgctggtgca ggcgactcgg
      661 gcgatggtgt cggcggggag ccagacctcc cgcaccgggc gttctcgcac ccggtcctat
      721 cgccagtcgt tcctgctcgc ttacgcgacc cgcgtcggtg agcgactgaa tacagcacgg
      781 gaggcaggca ccgccgcggt ggccgatccg gcccggttgc tgccggtact ggccgcccgg
      841 gaacgggtgg tggacgaact gttcgagtcg atgttcccgg agtcagtggc ccgctcgttc
      901 agcgtcggga atgccgctgg gtggcatgcc ggccgcgcag ctgcggatct cgcagtactc
      961 gatacccgcc gcgcggtggc ctcaggaggc aactgatcag gtgcccccca cgcactgaag
     1021 tgtcgatgcc gtgggcgatc ggtgttgtga atgatcggga cacgcaggga tccgtaaggt
     1081 gaaggtggag ccggtgccgg gcttgctcca gaggtgcacg ttcccgccgt ggttggcagc
     1141 gacgtgcttg acgatggcca gccccagccc ggttcccccg gtggagtggc tgcgcgcctg
     1201 atcgacgcgg aaaaaccgct cgaatacccg ctgctggtgt tccggagcga tacccaggcc
     1261 gcggtcggtc accgcgatct ccaccaaccc gttcaccagc tgtctgctga ccgataccgt
     1321 gctgcccgat ggcgagtacg ccaccgcatt ggccagcagg ttggatagcg ctgtcgccag
     1381 cgttgcatca cccttgacca acagcccact gggcgcatcg acggtgatcc ggatgttggc
     1441 cgactcggcg gccagccggc aacgatccag cgcctcgtgc actacttcgt ccacctcgac
     1501 tgtggccagc tcggggagtc gctcggcact ctgcgggcgg gacagcacga tcagctcggt
     1561 gaccagcgcg cctaaccggt tggcctcatt gaggatcttg gtggtgaacc ggcgcacctc
     1621 ctgcggctcc tcagcggcct ccagcacggc ctcggccagc agcgccaccg cccctaccgg
     1681 ggtcttcagc tcatgactga cgttggccac aaaatccccc cgtacctcat catcgagccg
     1741 agccgtatcc gatttatctg gcgcgggatc ctccgggcgc acgccgcaga ccaagcccgg
     1801 ttcggcggga ggactggcca gcaccagctc cgccctgtct ttgcccggca ccacaccgtg
     1861 gtgctcgatc tggtggggcg ccgtaccagc cagggaccgc ggcgccacga gcccggtgcg
     1921 gcgaccgatg agaatcccga tcacgagcgc gccgatcatg gcgaacacga caactacaag
     1981 catcaccccc cgatcgtgtc atcgaaagag ggtaacctct agttaaagag caccctaagt
     2041 aacgaaatcc gtctcggatg ggtgagactt cgtccctcgt tcaccgcggg ttcatcctct
     2101 ggcggccaag gtatctggac acaccgaact ctcagccatg gggaaccgcc tgcacagaaa
     2161 ccaccaccga agccgccgac ctccgcgccg ttaggtgcct tcgacgttgt cgaggcagca
     2221 taggacgatc ccgggaacgt gcgagggata gagaccttcg tcatccctcg tggaggtttc
     2281 tgtcatccct cctcgactgc tggacttggg ttcttcacct gcggactgca gcgcctcccg
     2341 aatgaatccg tgcgtgcgaa aattcgattg tgaaaggtac tcatctgcgc tgatcatacc
     2401 gtccagccct tcgtggtgtg tttcccgaac agcgctcacc gccacccagg tggtcatggc
     2461 cagcacatct ggacctgctg gagctccacc cgccggggct acggctactg caacggcaac
     2521 gtgtacgaca ggcaccagct ccggcgccct tccgaccgtc acggttcggc acacccaccc
     2581 tggctcggct ttcacgtctg gcacccagaa gaccatcact gggacttcct gcggcgcggg
     2641 cacgactctg gtcagcggcg gcgccgcgat cagcggaggc gatcctacgg ccagcagctt
     2701 cacggtgtcg ggttcgcagg gcgatcacct tatcggcgat taccccagca cttcgacagg
     2761 tgatctgcca gtaacggaac cacgcagcag aactggaccg cgatcgggaa aaccggagat
     2821 cggggagcac gggtgcgtac acggatgcgt gggcactgtg tatagcctga atccgcgata
     2881 gaagcggcct gagtccggga aaggcgactg atcaggtccc cgtaagctca ccgcctgtgc
     2941 tggtgctgct accgccgtca gagagcaagg cctcaggggg tgatggcccg gcgctaaagc
     3001 ttgactcact cgcacatccc gatctcaccc cggtacgccg gaagttgatc gacgagctgg
     3061 tcgcgctggc cggagatgtg cccgcagggt tgctcgccct gaagctttcc gagcgccagc
     3121 gaagcgaact ggaacgaaat gcctcgctgt ggaccgcgtc aacgctgccc gcgctgcgcc
     3181 gctacaccgg cgtgctctac gcagccctgg atccgagctc gctgcggccg gcgcagcggg
     3241 cccggcttgt ggtggcatcc gcgttgttcg ggctgctcag tgccgaggac tcgataccgt
     3301 tctaccgact ttccgctggt tccgcgcttc ctgcgttggg ttccgtgcgc tcgatctggc
     3361 gtccggtgct cgggcccgcg ctagccgcga tcgccggacc ggtggtcgac ttgcgttcgg
     3421 gcggttacac cgcgctggcg ccggcgcctg gcgcggtcac cgtgcaggtg accagcgagg
     3481 atggacacgg ccgtcgtcgt gtggtgagcc accacaacaa gtcccacaag ggccgcctgg
     3541 cccggctcct cgccaccgcg ccacgggcgg tgtccgatgc cgatggcgtg gcccggatcg
     3601 cccggcgcgg cggcctgcgg gtccaccgca tcggggagca cacactggaa ctcgtcgtgc
     3661 ccgcttaatg gaggttatag atcgcaaaca cgatccttcg gtgagataca cctatcagtg
     3721 gatccgcgtc tacacgggtg aagcctgcgg cgaggtcact ggccagcact gattaagcga
     3781 tcgccccacc cgagttggtg cacttgcccg tccagacgcc acgagcattg cctctcggct
     3841 agtactcacg ccgatagtgt ctacgagtat cggtcaatgt tgaccatgtt cgtgcctcca
     3901 ggacatgagc ctgcgctccc atctcagacc tgactttgat caatttgttg atcttggagt
     3961 ggggcgttgg ggttgacctg cgggttcgtt gtcgggatcg gctgaatctg tgcactaagt
     4021 cgatctcgta gcgtgtggtg tcgtggcgta cgtgcgcacg gtgaggactg cgtcgggggc
     4081 tcgggcggtg cggatcgtgc acggctcccg gcggggatcg cgcacgatcg agcatgtcgg
     4141 atcggcgcac gatgagctgg agctggaggc gctgaaggcc gcggcgcggc agcggctggc
     4201 cagcgggcag gcgcagctgg atctcggcct ggacgccgcc gcggccgcgg ggtcgtcggg
     4261 gccgttggag atcgtggcct cgcggatggg gcatctgtgg gatgggttgg gcagagcgta
     4321 tgacctgctc gggttcgccc gggccgccgg cggcgatgag gtgttccggc agttggtgtt
     4381 ggcgcggatc atcgagccga ccagcaaggc cgacagcctg cgggtcctgg cggaggtcgg
     4441 cgtggacgcg gtgtcgtatc ccacgctcaa ccgccacttg cccggttacg cgaccgaaca
     4501 gttccggcgc aagctcgccg cggcctgcgc acggcacgcc cagctggggc cggcgtcgct
     4561 ggtgctctac gacgtgtcca cgctctactt cgagaccgac gccggcgacg ggttccgtga
     4621 gccggggttc tccaaggagc gccggctgga gccgcagatc acgatcgggc tgctcaccga
     4681 cgcggccggg ttcccgctca tggtcgaggc gttcgagggc aacgcggccg aggcgaccac
     4741 gatgctgccc atcatcaccg cgttcatggc cgctcaccag ctcgccgacg tcaccatcgt
     4801 ggccgacgcg gggatgatct cggcggcgaa ccagcgcgcg atcgaggccg cagggctgtc
     4861 gttcatcctc gggatgaagg tccccgacat cccctacggc gtggccgagt ggcgccgcga
     4921 gcacccagac gagccgatgc ctgacgggct gatcctcacc cagccccggc cggccggtcc
     4981 ggcggacaaa cgtcgtgacc agatcgtcta ctaccagtac aaaaccgacc gggcccggcg
     5041 caccctgcgc gggatcgacg agcaggtcgt caaggccgag aaggctgtcg cggggaaggt
     5101 gccggtcaag cgcaaccggt tcatcaagct cgtgggcgcc gacaagtcgg tcaaccgcac
     5161 gttggaggtc aaggcccggg cgttggccgg gtggaagggc tacatcacca ccgttcccgg
     5221 cgcgagcgcg gagttcgtga tcggcgccta ccatcggctg ttcgaaatcg aggcgtcgtt
     5281 ccggatgtcc aagcacgacc tgaccgcgcg gccgatctac caccacaagc gcgagtcgat
     5341 cgaggcgcac ctgagcatcg tgttcgccgc gctcgcggtc ggccggctcg tcggggaccg
     5401 caccggctgg tcgatccgca agttcgtgcg caccgcccgc cgctaccgca ccgtccagat
     5461 ccgcaccggc cagcacctac tcaccgccga agacccactc cccgacgacc tccgcgaagc
     5521 actcgcgcac atcacctgac ccgaaggtgc gcactaactg ataagagtcg ggagacgcca
     5581 cgagcattgc ctctcggcta gtactcacgc cgatagtgtc tacgagtatc ggtcaatgtt
     5641 gaccatgttc gtgcctccag gacatg
//
LOCUS       DASVXZ010000093         6598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1349815, whole genome shotgun sequence.
ACCESSION   DASVXZ010000093 DASVXZ010000000
VERSION     DASVXZ010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6598
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349815"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(316..594)
                     /locus_tag="VF788_01780"
     CDS             complement(316..594)
                     /locus_tag="VF788_01780"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8932933.1"
                     /translation="MRSWQVAYRGLFPDDYLDGLRAEDRMARYTFGDVRPDGPTTVVA
                     VVDAAICGFVTTGPSRDEDAADTGEVYAFYVDPQYWGRGIGRSLIAEA"
     gene            800..1465
                     /locus_tag="VF788_01785"
     CDS             800..1465
                     /locus_tag="VF788_01785"
                     /inference="COORDINATES: protein motif:HMM:NF013468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HEX8932934.1"
                     /translation="MTIVRADEEGLRQVGQALDASIPIVVPLPTPLPYVIAGSDAAAV
                     NVAKGRPAEQATGVAVANFTLVTPYVELDEDTLAFARWLSAHELLNLILPVGEGSPAW
                     MRPSMSQGWLGVMLGWLGQIRPLLDERGHLYVSSANRTGGDVAVTAATANTAFGDEFL
                     VIDGDAARDQSVASGSAAIVGVGPHRQVDVVRHGINDEDFAGDTSRFLQELIQRWEAS
                     RPS"
     gene            complement(1658..2131)
                     /locus_tag="VF788_01790"
     CDS             complement(1658..2131)
                     /locus_tag="VF788_01790"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8932935.1"
                     /translation="MILAGVIEYRLRPVDGRDSLALYELHRDTMRIYIEEVFGGWDEA
                     VQLAFHEQWMNRQRAQVIEVDGRLVRVVDTEWRDGELYLARIEVSPALQNLGLGDAII
                     TGLIQLAARRSLPVGLDVFEVNPARHLYERLGFHTTGFSGARHRRGRCFSASVRR"
     gene            complement(2330..3403)
                     /locus_tag="VF788_01795"
     CDS             complement(2330..3403)
                     /locus_tag="VF788_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932936.1"
                     /translation="MIGRPDQGGELGLQRFGEGGGRGTDLQGLIRTSAIPGSVAGRRP
                     DLQRHADIRHHHCMQLRLVAPIAALVAVLVMAAPAWAGTVQIQDDAHVLNATAVQNDA
                     ATLPVGVYIWATTQDADSKSVFDTDVRNKVNAAFPIVIGINTQSHHESIQIGSQAGLS
                     QRAALAAESSANGAFLGTIQSSHDYTKAVTAALDKLRTGFAVAHRGGAPVRRVPAQPA
                     GFGAGLLLVIVLIFGVIAAVVLMARRRRRSGFGSGPSTVAGPPPTGPYPDYGPSYGGP
                     GYRSGMGAGTAGAIGAVGGGLLGYELGKMQGEEQQFRRDEMMYDHDRGGPHDGSDQSD
                     WVVGEDSDFGDAGDSGQQGSGDW"
     gene            3961..4176
                     /locus_tag="VF788_01800"
     CDS             3961..4176
                     /locus_tag="VF788_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932937.1"
                     /translation="MDDEVVNMVIPATTSTSAALAARAITAPCVPGTSSAPRLTHRRA
                     AEAYPDRDAGAESDSPSWLYPLMGAAG"
     gene            4699..5241
                     /locus_tag="VF788_01805"
     CDS             4699..5241
                     /locus_tag="VF788_01805"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEX8932938.1"
                     /translation="MGNNEKITSTVKGAVTTALTAAAIAAPAIAGGVGIAEAASAATN
                     KPPSAPRPAAAPPGPQVVSATPCGVSAKACVVLSHHQAWLTDGKGRITRGPVPATGGT
                     PADPTPTGTFHVLSKDAHFRSTEFHNAPMPYSVFFYPGDAFHADNVHQWSHGCIHLNL
                     DDAQAFFNALKVGDQVQILP"
     gene            complement(5601..5930)
                     /locus_tag="VF788_01810"
     CDS             complement(5601..5930)
                     /locus_tag="VF788_01810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932939.1"
                     /translation="MFGSKPSGVLVRDELCHVIFDNLPALGLIDEGLAVPGVHRLVEL
                     TGGQAADYEELAFDTATGRLLMLIESLPDGPPFRACVEEYDRQYRLVASKPLDFPWNN
                     RTRTSKA"
     gene            6032..>6598
                     /locus_tag="VF788_01815"
     CDS             6032..>6598
                     /locus_tag="VF788_01815"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8932940.1"
                     /translation="MGASTFQVPVTTRRVYALGALAAVLFGYDGGIIGAAILFIRQDV
                     PLTSWEQGAVVSATVFGAMLGALGSGPAADRRGRQQLLLAAGVIFTAGALGTGVASSV
                     LMLVLFRFTLGLAIGIASVIVPLYLAEMAPTQDRGVITSLNQYMIIVGVALASAVGFG
                     LAFASSWRWMLLIGVIPAIVLIIGMVGMP"
BASE COUNT         1148 a         2175 c         2079 g         1196 t
ORIGIN      
        1 cccaagcctt acccgtactg gcacatctcc accgttggat cggatcgcaa gctgccaggt
       61 gatgtctacc catgatcaac tgcttcttcc cgacccgcct gcagcgggat agtcccgacg
      121 ccaactcatg cacctagggg cattagggca gacagcggcg aaaccaactt cgtcggccag
      181 catgccccag acgtattctt ggcgccggcg cccgtcggac cgccatccgt cggcccggta
      241 gaagcgctgg gctcgctcgt tacctgctag cacccacagg acggctttcg cgagtccccg
      301 gccgcttaat tgagttcagg cctcggctat cagggatcgc ccgattccgc gcccccagta
      361 ttgcgggtcg acatagaagg cgtacacctc gccagtgtcc gctgcgtcct cgtccctgga
      421 cggaccggtg gtcacgaaac cgcaaatggc agcgtcgacg acggcgacaa cagtggtagg
      481 accgtcgggg cgaacatcgc cgaatgtgta gcgggccatg cggtcctcgg ctcgcagccc
      541 gtcgaggtag tcatcaggaa acaaaccccg gtacgccacc tgccaggacc gcacgtggac
      601 accggccaca tcggcggcat cctgcggttt tgcctcacgt acgcttatca ctcgtctagt
      661 gtgcgaccct cccggcggcc catgcgcccg gtttccgtga ccgcaccgca ctgtcggcgg
      721 caagctgtta ctgacgcgct catcgaggca gatgccgcta cggcagggtg atccgctatc
      781 cgagccagaa gggcgagcca tgaccatagt gcgagccgat gaggagggtc tccggcaggt
      841 cggccaagcg ctggacgcga gcatccccat cgtcgtgcca ctgccgacac cccttcccta
      901 cgtcatcgca gggtccgacg ccgcggcggt caatgtggcc aaggggcggc ctgccgaaca
      961 agccactggc gtggccgtgg ccaatttcac cctggtgaca ccgtatgtcg aactcgacga
     1021 ggacaccctc gccttcgccc ggtggctgtc ggcccatgag ttgctgaatc tgattctgcc
     1081 ggtcggggag ggcagccctg cctggatgcg tccctcgatg tcgcagggat ggctgggggt
     1141 catgcttggc tggctgggcc agatccggcc gctgttagac gagcggggtc atctctacgt
     1201 cagcagcgcc aaccgcaccg ggggcgacgt ggctgtcaca gccgcgaccg ctaacaccgc
     1261 gttcggcgat gagttcctgg tgatcgacgg tgacgcggcg cgagatcagt ccgtcgcctc
     1321 cgggtcggcg gcgatcgtcg gggtcggacc gcaccggcag gtcgatgtgg ttcggcacgg
     1381 catcaacgac gaggacttcg ccggcgacac cagcaggttc ctgcaggaac tgatccaacg
     1441 ttgggaagcc agccggccat cctgacctta cgagcccacc gggggcgccg ctgaccgatt
     1501 cgcctgcggt gcggcgtcag gtgatcgtcc agcctggtga tgcgaagatc cagtccaggc
     1561 cgtcttcgcc gaagctgtcg agctctgcga tcctggcgag cccggccttg aggacctggt
     1621 catgagcgcc gtgcgcatga gaccgtccac ctctgcgtca ccggcgcacg cttgcgctga
     1681 agcaccggcc gcgccgatgt ctcgctccgc tgaacccggt ggtgtgaaaa ccaagtcgct
     1741 catacaggtg ccgagctggg ttaacctcga agacgtccag accgaccgga agacttcgac
     1801 gggcggccag ttggatcagg cctgtgatga tcgcgtcgcc gagacctaga ttctgcaacg
     1861 cagggctcac ctcgatgcgc gcaagataga gctcgccgtc gcgccactcg gtgtcgacca
     1921 ctctcaccag gcggccgtcg acctcgatca cctgggcccg ctgtcggttc atccactgct
     1981 catggaacgc cagctgcacg gcctcatccc aaccaccgaa gacctcctcg atatagatgc
     2041 gcatcgtgtc tcggtgcaac tcatagagcg cgagcgagtc ccttccgtcg acgggccgca
     2101 accgatactc gatcacaccc gccaggatca tccacgatct ggcggacctt caaacggaaa
     2161 tccgacggac cggccagctg ctgggtaccg agtctgcgat ggattcaagc ggagagctga
     2221 ccagccgtgc cgttgcggtt tgtcgatgcg ctcgcggtgg cttgccgcca acatcgacgt
     2281 ggcgactacc aacgcgccag ttgactgtca acggtgtccc gaatttagtt caccagtcgc
     2341 cagagccctg ctggccacta tcgccggcgt caccgaagtc actgtcctcg ccgacgaccc
     2401 agtcgctctg atcggacccg tcgtgcgggc cgccgcgatc gtggtcatac atcatttcgt
     2461 ctcgacggaa ctgctgctcc tcaccctgca tcttgcccag ctcgtagccg agcaatccac
     2521 caccaaccgc accaatggca ccggcggtcc cggcacccat tccggagcgg tagccggggc
     2581 ccccataaga ggggccataa tccgggtacg ggcccgtggg tggagggccc gcgaccgtcg
     2641 atggtcccga tccgaagccg gaccgacgac gccggcgagc catgagcacc acggctgcga
     2701 tcacaccgaa tatcagcaca atgaccagca gcaagcccgc accgaagccg gcgggctggg
     2761 ctggaacccg ccgcaccggc gcgccgcctc gatgcgctac ggcgaatccg gtgcgcagct
     2821 tgtccagcgc ggcggtgacc gccttggtgt aatcatggct gctctggatc gtgccgagga
     2881 acgcgccatt cgcgctggac tccgcggcga gcgcggcgcg ttgggacagt ccagcttgcg
     2941 agccgatctg gatcgactcg tgatgagact gcgtattgat cccgattacg atcgggaagg
     3001 ccgcattgac cttgttcctg acgtcggtgt cgaagaccga cttgctgtcg gcgtcttggg
     3061 tggtggccca gatgtagacg ccgacgggca gcgtggccgc gtcattctgt acagcagtcg
     3121 cattcaacac gtgggcgtcg tcctggatct gcaccgtgcc cgcccacgcc ggtgccgcca
     3181 tcaccagtac cgcgaccaat gctgcgatcg gtgctacgag acgaagctgc atacagtgat
     3241 gatgccggat atcggcatgt cgttgcaggt cgggacgccg acctgcaacg gatcctggga
     3301 tagccgaagt ccggatgagc ccctggaggt ccgtgcctcg accaccaccc tcaccgaacc
     3361 gttgtaggcc gagttccccg ccctgatcgg gtctgccgat catctggact tctcaccgac
     3421 tcagctttgg cgtcgggtcg cgcggtctgc ctgtcttgct tgccgtgctc gctggccttg
     3481 gattcttcat gagccgcgct cgttgagcgg taccccgctc gctgtgcctg gacttcacgt
     3541 tgccggtcag ccatggatgg ccggtcccca tgattgggaa tctcgcgctt cgtgccgtcg
     3601 cagtcacacg gctcggtgtc agtcgtcggt gattccgtct ctcccgtgtg ggagcgggta
     3661 gggacggtcc agtatccagc atcttgggtc ggcaccgttg atggcggcgg caacaccggg
     3721 cggttatccg gcgcgggtgg cggagtgggc cgagctggca ggccacgatg ggctgtcggc
     3781 aaaggctgct ggtgtgcggg cactgccggg gagtctgtgg agtacgcctt ggccggtatc
     3841 tgcccggcaa atcctactgg tacgtcgatg ggcgaaacgg tcactagatg ctcatcactg
     3901 gtcgcggctg ttacaggagc cgataactga cccggcgtgg gtccggcaac tgctgactcg
     3961 gtggacgatg aggttgtgaa catggtcatc ccggccacca cgagcaccag cgcggcgctt
     4021 gccgccagag cgatcacggc gccctgcgtc ccaggtacca gttcggcgcc ccggctgacc
     4081 catcgccgtg cggccgaggc ataccctgac cgcgacgccg gggcagagag cgactcgcca
     4141 tcttggttgt acccgttgat gggtgcggcc ggctgatcga tgttggcagc tgcaggtggc
     4201 gctgagctgg tgacgggctg gaaaagatcc acgacctgat tggtgcgcgg gtgggtcggg
     4261 aagttcgagc cactcaccaa gacgcggtcg ccctcgccga attcagtcca ccgaccagac
     4321 ccctgccgtg ctgggcctgg accaccaggc gactcgtttg ggttcactgc tgcaataacc
     4381 tccgttgcag atcgacgggc cacaggggtc catcagttac tcagcgtgct cgaccgatta
     4441 cggttctcac acacagatcg ctcagtcagt ccatgccgtt acggccagtg gggtccgata
     4501 ctccgtggac gcgcaccacg cccgccgaac tcaagcagcc ggcacgtcgt cgcgccgtag
     4561 gccggcccga gctcccacac gtcgccgtcg agaacactcg cggcgagtca ctcatcgtca
     4621 cggttggtaa caaaacaatc tgggagacga tgagagcaga cgggaggaat gtcgcgatcg
     4681 cgtagctgga ggcgggtgtt gggtaacaat gagaagatca ccagcacggt gaagggtgcc
     4741 gtcaccacag cgctgaccgc cgcagcgatc gccgcaccag cgatcgctgg tggtgtgggg
     4801 atcgccgagg cagcatccgc agcgaccaac aagccaccat cagcaccacg gccagcggcc
     4861 gccccacccg gccctcaagt agtgtctgcc acgccgtgcg gggtcagcgc caaggcatgt
     4921 gtggtgctct cacaccacca ggcgtggctg accgacggaa aggggcggat cacccgcggt
     4981 cccgtgccgg cgaccggggg aaccccggcg gatcccacac cgaccggcac cttccatgta
     5041 ctgtccaagg acgcccattt ccgcagcact gagttccaca acgcgccgat gccctactca
     5101 gtgttcttct atccgggaga tgccttccac gccgacaatg tgcatcaatg gtcacacggc
     5161 tgcatccatt tgaatctgga cgacgcccag gcttttttca acgccctcaa ggttggtgac
     5221 caggtacaaa tcctgccctg aaatggtagc caattccacc gtgaccgaag atttatcgaa
     5281 cctggagcgg ttctcgtcat tgtggcgtgt caacttgttc ggcggagttc gagctgccgg
     5341 attgacgaac tcttggatac caaggtgcga cagctcgcgc ccatagccgg ggcgcttagt
     5401 accgccaaag ggaggaagcc ctcgagcgct cggtccacca caatcatccg tttcgcgcta
     5461 atgcagctct gaccctgttg cgcatgcggc cgatcatcgc ggcctccacg gtgcgctcca
     5521 ggttgtgatg tcaagcacga tgaacggatc gctgccgcca agctcgagca ggtggaggcg
     5581 ctcactacgg cgcacgcagc tcaggccttc gatgtccttg ttcggttgtt ccaggggaag
     5641 tccaacggct tgctcgcaac cagccggtac tgcctgtcgt actcctcgac gcaagcccgg
     5701 aaaggcggcc cgtcgggaag ggactcgatc agcatgagca gtcgcccagt ggcagtgtcg
     5761 aatgccagct cctcatagtc ggctgcctgg ccgccggtca gctcgaccag ccggtgcacc
     5821 cccggcacgg ccaacccctc gtcgatcaac ccgagcgcgg gcaggttgtc gaagatgaca
     5881 tggcacaact cgtctcggac cagcacaccg ctgggcttgg atccgaacac cagaaagtcc
     5941 gcgtgccctt gtccggcaac ggcgccgtca cgacatgctc gacgcggtca ccagaggggt
     6001 tccagatccg ttattgcatc ggaggtagct gatgggggca tcgacgttcc aggtcccggt
     6061 gaccacgcga cgcgtgtatg ccttgggtgc gttggcggcg gtgctgttcg gttacgacgg
     6121 cggcatcatc ggtgccgcga tcttgttcat ccgccaggat gtgccgctca cgtcctggga
     6181 gcaaggtgct gtggtcagcg ctacggtgtt cggggccatg ctgggcgcac tgggcagcgg
     6241 tcccgccgcc gatcgtcgag gacggcagca gctgctgcta gcagccgggg tgatattcac
     6301 cgcgggagcc ctaggtaccg gcgtcgcctc atccgtcttg atgctcgtgt tgttccgctt
     6361 caccttaggg ttagccatcg gcatcgcgtc ggtgatagtg cccctctacc tcgccgagat
     6421 ggcacccacc caggaccgcg gcgtgatcac ctccctgaac cagtacatga tcatcgtagg
     6481 ggtggccctg gcctcggccg tcggctttgg cctggccttc gccagctcgt ggcgatggat
     6541 gctgctcatc ggcgtgatcc cggcgatcgt gctcatcatc gggatggtcg gcatgcct
//
LOCUS       DASVXZ010000094         3324 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_458891, whole genome shotgun sequence.
ACCESSION   DASVXZ010000094 DASVXZ010000000
VERSION     DASVXZ010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3324
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458891"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..623
                     /locus_tag="VF788_01820"
     CDS             <1..623
                     /locus_tag="VF788_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019818364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HEX8932941.1"
                     /translation="LAVQACGLDIAYPAGHHGLLDRIAVDGAVVSEYPPGIRPARHRF
                     LVRNRLIAAFAAGTVVVEAGVRSGARSTASAAFALGRVVMAVPGPVTSALSVGCHLLI
                     REEQAVLVTRVAEVLEAVGRIGADLAPPLTTPRRPTDGLSAELLAVYEALPARASRHP
                     EQLVRDSGVPLNRVRSALPLLELQGLVGCGTSGWHRVLGDDGRGGA"
     gene            671..1597
                     /locus_tag="VF788_01825"
     CDS             671..1597
                     /locus_tag="VF788_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009037 - tyrosine-based site-specific
                     recombinase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEX8932942.1"
                     /translation="MESDSLPDGLAAYRERFVAHLRSVRGLSLHTVRAYRGDVTTLLQ
                     YLADSGRDDLAALDLPVLRGWLGGQHRNGRKRSTLARRVAAARAFTAWATRAGVLQSD
                     PGPRLVAPRSRRALPAVLHPEQAAAALEATQRGAAEADPLALRDHAAVEVLYATGIRV
                     AELCGLDLGDLDQPRRLLRVLGKGAKERAVPYGVPAQRALLRWLAEGRPALAGPHSGS
                     ALFLGARGGRVDQRIVRTVVHDAVGAVPDAPDMGPHGLRHSAATHLLEGGADLRTVQE
                     LLGHATLATTQLYTHVTVERLKAIHDRSHPRS"
     gene            1673..2446
                     /locus_tag="VF788_01830"
     CDS             1673..2446
                     /locus_tag="VF788_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FliA/WhiG family RNA polymerase sigma factor"
                     /protein_id="HEX8932943.1"
                     /translation="MRAEEVEAGIVALWQAYGRERDATLRDRLVLHYAPLVKYVAGRV
                     GTGLPAHVDIADLVQSGVFGLWDAIDRFEPERGLKFETYAMQRIRGAILDELRAQDWV
                     PRSVRSRAREVERALERLETRLQRSASDAEVATELGITVAELRELYAQLQLTSVIALD
                     ELIAVGRGGTSIAETLPDDAADEPGALLDSVESRRLLAEAVSQLTDRDRVVVSLYYFE
                     NLTLAEIGRVLGVTESRVCQLHTRAVLRLRSKMLEACTG"
     gene            complement(2662..3117)
                     /locus_tag="VF788_01835"
                     /pseudo
     CDS             complement(2662..3117)
                     /locus_tag="VF788_01835"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
BASE COUNT          495 a         1088 c         1187 g          554 t
ORIGIN      
        1 ctctcgccgt gcaggcctgt gggctggaca tcgcctatcc cgccggtcac cacggtttgc
       61 tggatcggat cgctgttgat ggcgcggtgg tcagcgagta cccacctggt attcggccgg
      121 cgcgccaccg cttcctggtc cgtaaccgcc tgatcgccgc attcgcagcc ggcactgtgg
      181 tggtcgaagc cggggtccgc agcggtgccc gaagcaccgc ttctgccgca ttcgcgctgg
      241 gtcgggtggt gatggcggtg ccgggtccgg tcacctcggc gctctccgtc ggctgccacc
      301 tactgatacg tgaggaacag gcggtgctgg tcactcgggt agcggaggta ctagaggcgg
      361 tgggacggat cggcgcggac ctcgcgcccc cattgaccac ccctcgccgc ccgaccgacg
      421 gattgagcgc ggagctgctc gcggtctacg aggcattgcc agcgcgcgca tcccggcatc
      481 ccgaacagct agtgcgcgac tccggagtgc cgctgaaccg ggtgcgctca gcgttgccat
      541 tgctggagct gcagggtctg gtgggatgtg ggacgagcgg ctggcaccga gtgcttggcg
      601 atgatgggcg tggcggtgct tgacgcgacg ccctcgaggg cgaagcgtgc tgcgggtgcg
      661 cgaggaccgg ctggaatccg actcgttacc ggatggccta gcggcgtatc gggaacgctt
      721 cgtggcccac ttgcgatcag tgcgtgggct gtcgctgcac accgtgcggg cgtaccgcgg
      781 agatgtcacc accttgctgc aatacctggc cgattcgggt cgcgatgacc tcgcggcgtt
      841 ggacctgccg gtgctgcgtg gttggttggg cggccagcac cggaacggac gcaaacgcag
      901 cacgctcgcg cggcgagtcg cagcagcccg cgcgttcacc gcatgggcga cacgagccgg
      961 tgtgctgcaa agtgaccccg ggccgcgact ggtcgcgcca cggtcacgac gcgccttacc
     1021 tgcggtgctg catccggaac aggcagcggc ggcactggag gccacgcagc gcggtgccgc
     1081 cgaggcggat ccgctcgcgc tgcgtgatca cgccgcagtg gaggtgttgt acgcgaccgg
     1141 gatacgcgtt gctgagctct gcggtctcga ccttggcgat cttgaccagc cgcggcgtct
     1201 tctccgggtg cttggcaaag gcgctaagga gcgtgcagtg ccctacgggg tgcctgcgca
     1261 acgagccctg ctgcgctggc ttgccgaggg ccgcccggcg ctcgcgggtc cacattcggg
     1321 atcggcgttg ttcttggggg ctcgtggtgg acgggtcgat cagcggatcg tccggactgt
     1381 cgtgcacgac gcggtcggtg cggtgccgga cgccccggat atgggtccgc acgggctgcg
     1441 gcacagcgcc gcgactcatc tgctggaggg gggcgcagat cttcgtaccg ttcaggagtt
     1501 actcggtcac gctacgctcg ccaccacgca gctctatacg catgtcactg tcgagcgact
     1561 gaaggcgatc catgaccgga gccacccccg ttcctgagca ctccgggggt catgatcgcg
     1621 tgctgaccgc tgtccccccg ccgacgttgc accatgcaat tcgaccggcg ccgtgagggc
     1681 agaggaggtg gaagccggca tcgtcgcgct ctggcaggcc tatgggcggg agcgcgacgc
     1741 taccctccgt gatcgattgg tgctccacta cgcgcctttg gtgaagtacg tggccggccg
     1801 ggtcggcacc ggattacccg cacatgtgga tatcgcggac ctcgtgcagt ccggtgtctt
     1861 cggcctgtgg gacgccatcg atcggttcga gcccgagcgg ggtttgaagt tcgagaccta
     1921 cgcgatgcag cggatcaggg gggcgatcct cgatgaactt cgtgctcagg actgggtccc
     1981 ccgttcggtg cgcagccggg cccgcgaggt ggagcgcgcg ctggagcgcc tggagactcg
     2041 cctgcaacgt tcagcctccg acgccgaggt ggccaccgag ctcgggatca ccgttgccga
     2101 gttgcgggag ctctacgccc agcttcaact gaccagcgtg atcgcgctgg acgagctcat
     2161 cgccgttggg cggggtggca cgtcgatcgc cgagacgctg cctgatgatg ccgcggatga
     2221 accgggtgcg ctcctcgatt cggtggagag caggcggctg cttgctgaag cagtctcgca
     2281 gctcaccgac cgggatcggg tggtggtttc cctgtactac tttgagaacc tcaccctcgc
     2341 cgagatcggc cgggtgctcg gcgtcaccga atcacgggta tgccaattgc acacgcgggc
     2401 ggtgctccgg ctccgaagca aaatgctgga agcctgcacc ggctgaagac cgggctcctg
     2461 ggtgcccctg gtgatgtgtg gcgcgccgtc gatcggcagg aggcgcactc gcaccgcgat
     2521 cagtcgcagt ggatccaggt agtccctgcc ggggccgggg gccgctgggg tcgggccgcc
     2581 tgatgccggg tcacgaaagg cgccccagtg caggcaaaca gcgacagggc agcctgcgtg
     2641 gccaggctgc accgtgccga tctgttctcc cttcgcgacc cattggccgg cggtgacgat
     2701 gactgacact ggttcatagg ttgttcgcag ccccccttgg tggctcaccg acaccacacc
     2761 gtggccggcc accattccag cgaagacaac cgtgccggcg ccggcggcga gtacgggcgc
     2821 accggccacc gcggccaggt caacaccgcg atgacctggc ccgtactgga acgacgggcg
     2881 gtgaaaggcc cgaacaacgg ccggcgaacc ggcaagcggc cagccgaact gttgccggat
     2941 cggccggcct gcctccggcc gcgcctgcgc cgccagtccg gcggggagcg gatgagcggg
     3001 ccgggcagac agttcggtgc tggcaggcga tccaccggac agcaccaccg cgagcacgct
     3061 gctgatcaga atccgggaca cggcagcagc ctgcctcgat cgaggcggcc tacccacaga
     3121 cgggacccca ctgttgggga tagcaggggg caatgtggat agccgacgtc cgcagcccta
     3181 cctccactgg ggttgtcgtc cgtcacgccg tacactgcga gggcgactcg catgcgggtc
     3241 gacttcgcgc gccagcgcta cgcccccaca gggcctcggc gtccggcggt cctcattgcg
     3301 atctaggaga tcgcacgggg tccg
//
LOCUS       DASVXZ010000095         1943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_369415, whole genome shotgun sequence.
ACCESSION   DASVXZ010000095 DASVXZ010000000
VERSION     DASVXZ010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369415"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..672
                     /locus_tag="VF788_01840"
     CDS             <1..672
                     /locus_tag="VF788_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003054486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932944.1"
                     /translation="RLFMRSDYWVGEYHYLTPLYSPCLSDSCAPGSSHLGTPLPAFPL
                     ALPLPILIFPILAGFRASCYYYRKAGYRAFLQSPPGCAVAEPAKKYTGETRFPLILQN
                     LHRYFFYLASALLLINTYDAVLAFFPASGGFGVGLGSLVLLVNVTMLWLYSLSCHACR
                     HIFGGRLKHFSAHPVQYWFWTQLSKINGRHMQFAWTSLITVMLTDFYIMAVAAGWIAD
                     LRLFN"
     gene            704..>1943
                     /locus_tag="VF788_01845"
     CDS             704..>1943
                     /locus_tag="VF788_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
                     /protein_id="HEX8932945.1"
                     /translation="MTEIERHDFDVVVIGAGGAGLRAAIEARELGKRTAVICKSLFGK
                     AHTVMAEGGIAASMGNVNSRDSWQVHFRDTMRGGKFLNNWRMAELHAKEAPERVWELE
                     TYGALFDRTKDGKISQRNFGGHEYPRLSHVGDRTGLELIRTLQQKIVSLQQEDFAEYG
                     DYEAKLKVFAECTITELLRDGGPIAGAFGYWRETGRFVRFDAPAVVLATGGIGKAFKV
                     TSNSWEYTGDGHALALRCGAALINMEFVQFHPTGMVWPPSVKGILVTESVRGDGGVLR
                     NSAQKRFMFDYIPDVFKDQYATSEQEADRWYDDPDNNRRPPELLPRDEVARAINSEVK
                     AGRGSPHGGVFLDVSTRLPAEVIRKRLPSMYHQFKELADVDITAEPMEVGPTCHYVMG
                     GVEVDPDTAAASVPGLFAAGE"
BASE COUNT          347 a          578 c          628 g          390 t
ORIGIN      
        1 aggctgttca tgcgcagtga ctactgggtc ggtgagtatc actacctcac gcccctgtac
       61 tcgccgtgtc tgagcgactc gtgcgcgccg ggttcatcgc atctcggcac cccgttgccg
      121 gcgttcccgc tggcgctgcc gctgccgatc ttgattttcc cgattctggc tggattccgg
      181 gcgagctgct actactaccg caaagctggc tatcgcgcgt tcctccagtc gccgccaggg
      241 tgcgcggtcg ccgagccggc gaagaagtac accggggaaa cccggtttcc cttgatcctg
      301 cagaacctgc atagatattt tttctatctc gcgtcggcgt tgctgctgat taatacctat
      361 gacgcggtgt tggcgttctt tcctgccagc ggtggcttcg gtgtgggtct aggttcgctg
      421 gtcctgctgg tcaacgtcac catgctgtgg ctgtactcac tgtcgtgcca cgcttgccgg
      481 cacatcttcg gtggccggct gaaacatttc tccgcccatc cagtccagta ctggttctgg
      541 acgcagttgt ccaagatcaa cggacggcac atgcagttcg cttggacatc gctcatcacc
      601 gtgatgctga cggacttcta catcatggcc gtcgctgcag gctggatcgc agacctgcgc
      661 ctgttcaact gactgagtgc gtctagctga caaggaatcc ccgatgaccg agatcgagcg
      721 gcacgacttc gacgttgtgg tgatcggtgc cggcggtgcc ggcctgcgcg ccgcgatcga
      781 ggcacgcgag ctgggcaagc gcaccgcggt gatctgtaag tccttgttcg gcaaagcgca
      841 cacagtgatg gccgagggcg gcattgcggc gtcgatgggc aacgtgaact cgcgggacag
      901 ctggcaggtc cactttcgcg acaccatgcg cgggggcaag ttcctcaata actggcggat
      961 ggcagagctg cacgcgaagg aagcaccgga gcgggtgtgg gagttggaga cctatggtgc
     1021 gctgtttgac cgcaccaagg acggcaagat tagccagcgc aacttcggtg ggcatgagta
     1081 tccgcggctg tcacacgtgg gtgatcgcac cggcctggag ctgatccgca cgctacaaca
     1141 gaagatcgtg tcgctgcagc aggaggactt cgccgagtac ggcgactatg aggccaaact
     1201 caaggtgttc gccgagtgca cgatcacgga actcctgaga gatggcggcc cgatcgccgg
     1261 agcgttcggg tactggcgcg agaccggtcg cttcgtccgg tttgatgcac cagcggtagt
     1321 acttgccacc ggcgggatcg gaaaggcctt caaggtcacc agtaactcct gggagtacac
     1381 cggggacggg catgcgcttg cactgcggtg cggtgctgcg ctgatcaaca tggagttcgt
     1441 tcagttccat cccaccggaa tggtgtggcc gcccagcgtc aaagggatcc tggtcaccga
     1501 gtcggtccgc ggcgacggtg gagtgctgcg caactcagcg cagaagcgct tcatgttcga
     1561 ctacatcccc gacgtcttca aagatcagta cgcgacgtcg gagcaagaag cggaccgctg
     1621 gtacgacgat ccggacaaca accgccggcc accggaactg ttgccgcggg acgaggtggc
     1681 ccgtgcgatc aactcggagg tcaaggcggg ccgtgggtca ccgcatggtg gcgtcttcct
     1741 cgacgtgtcc acccggctgc ccgccgaggt catcagaaag cgtctcccgt cgatgtatca
     1801 ccagttcaag gaattggctg acgtcgacat cacggctgag cccatggagg tcggtcccac
     1861 gtgccactac gtgatgggcg gcgtggaggt cgatccggat actgccgcag cgtcggtacc
     1921 gggattgttc gctgccggcg agg
//
LOCUS       DASVXZ010000096         2046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_10640, whole genome shotgun sequence.
ACCESSION   DASVXZ010000096 DASVXZ010000000
VERSION     DASVXZ010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10640"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..585)
                     /locus_tag="VF788_01850"
     CDS             complement(<1..585)
                     /locus_tag="VF788_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HEX8932946.1"
                     /translation="MSAVDNRTGRHRHRGPAPPAEAGAAAVHGHGHGHEPGPPASQRV
                     RRLLAAVLIPVVLATLVGLWLTWPADPPRRNIDVGFGQRPVQGQVLATSAAPCTSGSA
                     APAGQAKECISLSVLLTSGDSPGVTIQQVLPDEPSTPRFSVGDHVVLAYTGGNPSESE
                     SYQIQDFQRGSSMLWLVALFAAAVLLLGRWRGLAS"
     gene            636..1700
                     /locus_tag="VF788_01855"
     CDS             636..1700
                     /locus_tag="VF788_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rv2578c family radical SAM protein"
                     /protein_id="HEX8932947.1"
                     /translation="MRWDNLTLSDESAQDALFGAGDVITRTYGTPEFRGMTFYEVRAR
                     SVLNKVPGGSRMPFEWTVNPYRGCSHACVYCFARRTHEYLELDSGLDFNSKIVVKVNA
                     PDRLRKQLNSARWAGQHIAMGTNVDPYQRVEGRYRLMPGIIEALRDARNPFSILTKGT
                     LVLRDLDLLREAAEVTEVSVNVSVGFVDKGLWRQVEPGTPAPRARLGVCRTLTDAGIG
                     CGVLMAPILPYLTDSPSQLEATVRAIVEAGARSVTPIVLHLRPGAREWYFAWLEREHP
                     ELVARYHELYRRGAYATKSYQRGVCAQVAELTRRYGLSDVSSGQARRLPARRAAARAA
                     PTSDSVKLQTAEPVEQLSLL"
     gene            1786..>2046
                     /locus_tag="VF788_01860"
     CDS             1786..>2046
                     /locus_tag="VF788_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015785872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEX8932948.1"
                     /translation="MMRTHPAGTLRAEHAGHTVTLAGWVARRRDHGGVIFIDLRDSSG
                     MTQVVFREGEMAQRAHRLRAEFCLQVTGTVALRPEGNENLDIP"
BASE COUNT          330 a          666 c          703 g          347 t
ORIGIN      
        1 cgaggcgagg ccccgccacc ggccgagcag cagtaccgcg gcggcgaaca gtgccaccaa
       61 ccagagcatc gagctgcctc gctggaaatc ctggatctgg taggactctg attcggaggg
      121 gtttccgccg gtataggcca acacgacgtg gtcgccgacg ctgaaccggg gtgtgctcgg
      181 ttcgtcgggt aacacctgct ggatcgtcac tccaggtgag tcgccgctgg tgagcagcac
      241 gctgagcgag atgcattcct tggcctgccc agcgggggcc gcgctgccgc tggtgcacgg
      301 agcggcggac gtggcgagca cctggccctg caccggccgc tgcccgaagc cgacatcgat
      361 attgcggcgg ggtgggtctg ccggccaggt cagccacagc ccgaccaggg tggccagcac
      421 gaccggtatg agtaccgcgg cgagcagtct gcggacccgc tgtgatgccg gcggtcccgg
      481 ttcatgcccg tgaccatgcc catgaacggc ggcggcaccg gcctcagccg gcggggcggg
      541 accgcggtga cggtgccgcc cggtcctgtt gtccactgca ctcatcagta gcgagcttcc
      601 tggcacatcg aacgtcagtt cgataggatg ggccgatgcg atgggacaac ctgacgctgt
      661 ccgatgagtc cgcccaagac gcgctgttcg gggcgggcga cgtcatcacg cgcacctacg
      721 gcaccccgga gtttcgcggg atgaccttct acgaggtacg ggcccgttcg gtcctgaaca
      781 aggtacccgg tggttccagg atgccgttcg agtggaccgt caacccgtat cggggctgca
      841 gccacgcttg tgtctactgt ttcgcgcggc gtacgcacga gtacctcgag cttgacagcg
      901 gtctcgattt caactccaag atcgtggtga aggtcaacgc gccagatcgg ctacgcaagc
      961 agctgaactc cgcacgctgg gccggacagc acatcgcaat gggcactaat gtcgatcctt
     1021 atcagcgagt ggaggggcgc tatcgcttga tgcccggcat catcgaagcg ttacgcgatg
     1081 cgcgcaatcc gttctcgatc ctcaccaagg gcaccttggt gttgcgcgac ctggacctgc
     1141 tccgcgaggc cgcggaggtc accgaggtat cggtcaacgt ctcggtgggg ttcgtagaca
     1201 aggggttgtg gcggcaggtc gagcctggta cgcccgcgcc gcgggcccgg ctcggtgtgt
     1261 gtcgcaccct cacggatgcg ggcatcggat gcggagtcct catggcaccg atcctcccgt
     1321 acctcaccga ttcgcccagc caactcgagg cgacggtccg ggccatcgtc gaggcgggtg
     1381 ctcgcagcgt caccccgatc gtgctccacc tgcgtccagg tgcgagggag tggtacttcg
     1441 cctggctaga gcgcgagcac cccgagctgg tggcccgcta tcacgagctc taccggcggg
     1501 gcgcgtacgc gactaagagc taccagcgcg gtgtctgtgc ccaggtagct gagttgaccc
     1561 ggcgttatgg cctcagcgat gtgtcgtcgg gccaggcacg ccgactcccg gctcgccgcg
     1621 ctgcggcgcg ggcggctcct acgtcggaca gcgtaaagct ccagaccgcc gagccggtgg
     1681 agcagctcag cctgctgtga tgagggaggg ggcgggcggc gaggtccggg cgcggctagc
     1741 ctctgcagat ctgagtctgc catcagagat ctaggagcac tccccgtgat gcgtacccac
     1801 cctgccggca cgctgcgcgc cgagcacgca gggcacactg tcaccctcgc cggctgggtc
     1861 gcccgccgac gcgaccatgg tggagtgatc ttcatcgacc tgcgggactc ttcggggatg
     1921 acgcaggtgg tgttccgcga gggtgaaatg gcgcagcgag ctcaccggtt gcgcgctgag
     1981 ttctgccttc aggtcactgg caccgtggcc ctccgtcccg agggtaacga gaacctggac
     2041 atcccc
//
LOCUS       DASVXZ010000097         1517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1176384, whole genome shotgun sequence.
ACCESSION   DASVXZ010000097 DASVXZ010000000
VERSION     DASVXZ010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1176384"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1128
                     /locus_tag="VF788_01865"
     CDS             <1..1128
                     /locus_tag="VF788_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEX8932949.1"
                     /translation="LLAGCNAGHTAAPSAAAHHVTPAPPPPVAVISTDPPDRAAAVSP
                     LTPVTVTVAKGKLTQVSLTNPQGAPVAGKIDPDGKTWKPSESLGYGKTYTVNASAMGD
                     DNRTVSHSSTFTTIQPRTLTFPSINPLNGETVGVGQPLSVYFDEPIADRQAAENAITV
                     TTTPHVDGAFYWFSKHEVHWRPQEFWETGTQVTVEIHDYGKDFGNGVYGEEDRTSHFT
                     IGDEFIAHADGMTHQMIVDLNGQTVRTMPISMGRASSPSSNGIHVVTDRNATKVMDST
                     TFGLALDAGGYIAKVQWATRISNSGEFVHAAPWSVAQQGISNVSHGCINLSPDNAKWF
                     FDHVKKGDVVINTNTGGPDLKPYDGFGDWQVSWGQWVSGNK"
     gene            complement(1144..>1517)
                     /locus_tag="VF788_01870"
     CDS             complement(1144..>1517)
                     /locus_tag="VF788_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="3-oxoadipate enol-lactonase"
                     /protein_id="HEX8932950.1"
                     /translation="WLGTGEIAADVVAGWFTPKWAAAHPEIVEQTVQMISKTSDDGYV
                     ECCSAIAGWDGRRLLGRITAPTLVIAGSQDRGTPVAPHAKTLSSGIYRAKLEILDGAH
                     LAVIEQADRANRLIAKHAAAG"
BASE COUNT          310 a          516 c          442 g          249 t
ORIGIN      
        1 ctgttggcgg gatgcaacgc gggccacacc gctgcgccga gcgctgccgc gcatcacgtc
       61 accccggcgc cgccgccacc agtcgcggtc atcagtaccg atccaccgga tcgcgcggcc
      121 gccgtctctc cattgacgcc cgtcacggtg actgtcgcga agggcaagct cactcaggtg
      181 tccttgacca acccgcaggg cgcgccggtt gccggcaaga tcgacccgga cggcaagacc
      241 tggaaaccca gcgaatcgct gggttatggc aagacataca ccgtcaacgc cagcgcgatg
      301 ggtgacgata atcggacagt cagccattcg tccacattca ccaccatcca gcctcgaacg
      361 cttaccttcc cttcgatcaa cccgctcaac ggcgagacgg tcggcgtggg ccaaccgcta
      421 tcggtgtatt tcgatgaacc gatcgctgac cggcaagcag ccgaaaacgc gatcactgtc
      481 accacaaccc cacacgtcga cggcgcgttc tactggttct ccaagcatga ggtgcactgg
      541 cgcccgcagg agttctggga aaccggcacc caggtcaccg tggaaatcca cgactacggc
      601 aaggacttcg gcaacggggt gtacggcgag gaggaccgga cctcgcactt caccatcggt
      661 gacgagttca tcgcccacgc cgacggcatg acccaccaga tgatcgtcga cctcaacggc
      721 cagacagtgc gcacgatgcc gatctcgatg ggtcgggcca gcagtcccag cagcaacggc
      781 atacacgtgg tcaccgaccg gaacgcgacg aaggtgatgg actccaccac cttcggcctc
      841 gccctcgacg ccggtggcta catcgccaag gtgcagtggg ccacccgcat ctccaacagc
      901 ggtgagttcg tgcacgctgc gccctggtcg gttgcccagc agggcatcag caacgtcagc
      961 cacgggtgca tcaacctctc gccggacaac gcgaagtggt tctttgacca tgtaaagaaa
     1021 ggcgacgtgg tcatcaacac caacaccggc ggtcccgatc tcaagccata cgatggcttc
     1081 ggcgattggc aagtgtcatg gggccagtgg gtgtcaggca acaaatagtc cgcgacctca
     1141 ccttcagccc gcggcggcat gcttggcgat gagtcgatta gcccggtcgg cttgctcgat
     1201 gactgccaga tgcgcaccgt caaggatctc cagcttcgcc cggtagatgc cggaagaaag
     1261 cgtcttggca tggggggcga ctggcgtgcc tcgatcctgg gaacccgcga tcaccagggt
     1321 gggtgcggtg atccggccga gcagtcggcg gccatcccac ccggcgatgg ctgaacagca
     1381 ttcaacatag ccatcatcag acgtcttgct gatcatttgg acggtctgct cgactatctc
     1441 cggatgtgcc gccgcccact tcggggtgaa ccagccggcc accacatccg ctgctatctc
     1501 gcccgtaccc aaccacc
//
LOCUS       DASVXZ010000098         3524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_369746, whole genome shotgun sequence.
ACCESSION   DASVXZ010000098 DASVXZ010000000
VERSION     DASVXZ010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3524
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369746"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VF788_01875"
     CDS             <1..211
                     /locus_tag="VF788_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932951.1"
                     /translation="ARAGLVHRTPDPDDLRRVLLAVTSKSAQMIGKIDPDTARRLQVV
                     LTTMGSAAQRVLTEVIKDTARRLAR"
     gene            complement(376..630)
                     /locus_tag="VF788_01880"
     CDS             complement(376..630)
                     /locus_tag="VF788_01880"
                     /inference="COORDINATES: protein motif:HMM:NF028504.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5132 domain-containing protein"
                     /protein_id="HEX8932952.1"
                     /translation="MAPYLIGVVTAPLVAKVVKPLVRGAVKASVGLALEVKKAAAEAS
                     EEIHGLAAEVSSEKAAGAAMGVDVAAKAGRSRAGGTGLVN"
     gene            2195..2443
                     /locus_tag="VF788_01885"
     CDS             2195..2443
                     /locus_tag="VF788_01885"
                     /inference="COORDINATES: protein motif:HMM:NF028504.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5132 domain-containing protein"
                     /protein_id="HEX8932953.1"
                     /translation="MITYLIGLVSAPLVAKVVQPIARSAVKTTIELGLQARKLAADAA
                     EDLQDLVAETTAEMAAAEMEKKLEPPLPDQKVGRRFRP"
     gene            complement(2503..2625)
                     /locus_tag="VF788_01890"
     CDS             complement(2503..2625)
                     /locus_tag="VF788_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932954.1"
                     /translation="MVLGSVIFFDIRAAVEHAIAAWWIGIDSKAASRPPWVALI"
     gene            3110..>3524
                     /locus_tag="VF788_01895"
     CDS             3110..>3524
                     /locus_tag="VF788_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932955.1"
                     /translation="MERSPRALSMHARSVIPGRQRWDIGIVLASPRAAEFLEGKLRQA
                     PGIKSVRANPITGRLLVHHETALTSQDVERLVREAVVLADQQAAESARSSVPTPSAVP
                     AQVQHRRPVPPLGLAGSAALALALPLGKLIWRSPLA"
BASE COUNT          754 a         1098 c          995 g          677 t
ORIGIN      
        1 cgccagagcc ggattggtcc accgcacgcc ggaccccgac gacctgcgac gggtcctgct
       61 ggccgtgacg agtaagtccg cacagatgat tggcaagatc gatccggaca ccgcccggcg
      121 cctgcaggta gtcttgacca ccatgggctc ggcggcccag cgggtactca ccgaggtcat
      181 caaagacacc gcgcgccgac tcgcccgctg acactcgtca accgccggat acatactatc
      241 gaacgggtga acgccgaccg tagttccggg tgtgtgcacc cccggcagat gaacagccgg
      301 gtcaccaggg gatcacccgc gccaaaccgt cacagcgaat gataaccacc agtgaacgaa
      361 agctgtgcaa cctcgtcagt tcaccaggcc ggtcccaccg gcccgagacc gccctgcctt
      421 ggcagccacg tcgacaccca tagcggctcc ggccgctttc tcggagctca cctcggcggc
      481 gaggccatga atctcctcgc ttgcctccgc ggctgccttc ttcacttcca gcgctaatcc
      541 caccgacgcc ttgacagcac cccgcaccag cggcttaacg accttcgcta ccaacggagc
      601 agttacaaca ccaatcaagt atggagccat aacagccatc ctcagttccc cctctttaaa
      661 atgagtaggt gtggatctgt tggcatctgt aagcctgcgg gccataacaa acaataacta
      721 tatgctctga ctctagtcct acagcttccg ggaatcaagg acccagaggc aggacaacac
      781 agcaacatga tcgcttaaaa aaattggatc actactctaa gtagctccac cgagtacgtg
      841 ctcaacccta atgggacgat cgtgagagcc gtctgggtga acgagagcca gtgtggtaca
      901 tcccagtttc ccactaaact ggatcatggt gactgtgcac tgacactttg cgctatagcc
      961 ttccgtacag agatgtcgcc acttgctgcc caacgcggca tcgcgctcga ccaggtgaca
     1021 accggcgggc gcgacgctca agccgctgcc ggctccggct cgaccgtgtc ggcacacgac
     1081 cggtggcgtc tggtggggtg agcgaaatgt cagtgaagat ctccggaatg cggcggtatg
     1141 tgtccagtgc gtcgatcagt tcggcaggtc attgatgtct acttttagaa acgccgggac
     1201 gccaccacgg cctcatgcat ctttactcaa cggttgacca ccataaaggt gtccctgcaa
     1261 aggcggcgac cgacaataca accgaggcat agacgatttc ttcttcctga tgtggacata
     1321 aggtgcgagg tgatccgcag catgcgcgcg tccgatccgg gcttggacct gaaacttctc
     1381 gtcgctgaga acacgaccgc gttctcgggc aggttcaaat acagcctgtt ccggatcttg
     1441 cctcaactct gcgtcggtgg agaaggtgaa actctcgcac cgctagagct atcccgaatt
     1501 ggcaccacaa ccggatgatc gagccgtgcg agaccgcgtc gccccgctga cgcaaccact
     1561 ccgccagcaa ccggctctac cagtgcgtga tgccaatccg gccggtgacc aaggttggca
     1621 tggtgaccaa gttctcatca cgaaccatcg gtgaccgtcg cgggaggcgt ggccagcgta
     1681 gggcagagcc tcacacgggg gccattcaca ccgttccgaa caccgtcaag agttcaacat
     1741 ctcccgattg cagtgcgggt gtaggagctc agttcaccga gcggcgctgg tactgcggcc
     1801 gtggctacct acgggcggcc caagagcaga tcgacgttcc aggcagcacg ggccgcggtt
     1861 cacactccgg tcatcgtcta tctctacgct gccagtttct gtttaagaaa cacgcagtcg
     1921 tggccgcgtt gttcggcaca ccagtgtcga cgggtcagtt cggtcgtttg gtacgctcac
     1981 ggatcgtgac ggtccaaggt ctggagcacg ctgccaagac tcttcggtca atcctagcct
     2041 ccgtgtgcca gcccagctct ctagccttgc acttagccct gctgcgaagc tcccaagtat
     2101 cacgctcgcg atcacgctta catccattag gttcgcagtg gagaaacgcc ttgtccacag
     2161 gtatagaaac ggatatgaaa tgatgccacg tctcgtgatc acgtacttga ttggcctggt
     2221 gtccgccccc ttggtcgcga aggtcgtcca gccgatagcg cggagcgctg ttaagacgac
     2281 cattgagctt ggcttgcagg cgagaaaatt agctgccgat gcggctgaag atttgcagga
     2341 tctcgtcgcg gagaccactg ccgagatggc tgctgccgag atggagaaaa aactggagcc
     2401 tccgttgccg gatcaaaaag tcggtaggcg attccgccca tagccgagat ccaaatagaa
     2461 aggatctgtt gttagcccaa ggcgcgcatc cgggatgaac cttcagatca acgccaccca
     2521 aggcgggcga ctggccgcct tcgagtcgat cccgatccac cacgccgcga tggcatgttc
     2581 gaccgcggcc cggatatcga agaagattac actaccgagc accatcgaaa acactaaaca
     2641 ggcttatgct ggctgcgtcg gaacatgacc ctctgggaga tgggctatgg cttcggagtc
     2701 agcaggtccc actggtcggt gccacaagca ctggatggca gagttcgtca ctgatgtgct
     2761 cggtcgtccg gccgcgaatt tccggatcgt gcgccgggtg tgcgtggtca actggccgtt
     2821 ggtgtcgacg tttcgccggt tcccctccag gtcgctgagc ccggaacgcg gtgacaatgc
     2881 ggaatggcgt caaagcaggt cgaccgctcg catggatcgt gcgaatcagc actcggggga
     2941 ccctagattg ccggtactgc gaggcgacta tcacctagcg acaccaccat ccggtcagtt
     3001 atcggacgaa attttcccgc ctggcagtgt aaagatctac gaatgactct actaaacatt
     3061 atttagtcaa caatgatggg ctgctatgtc atcactaatg aactcgacca tggagcgcag
     3121 cccgagggca ctgagcatgc atgcgcgatc cgtcattccc ggtcgccaac gttgggacat
     3181 tgggattgtg ctggctagcc ctcgtgccgc tgagttcttg gagggcaaac tccgacaagc
     3241 gccaggaatc aagtcggtac gggcgaaccc gatcaccggt cggctactcg tgcaccacga
     3301 gacggccttg accagccagg acgtcgaacg gcttgtccga gaagccgttg tgctggccga
     3361 ccagcaggca gcagaatccg cccgatcctc agtacccaca cccagcgcgg tccccgcaca
     3421 ggtacaacat cgacgtcccg tcccgccatt gggcctcgct ggtagcgcag ctctagcctt
     3481 ggccctgccc ctgggcaagc tgatttggcg gtcgccattg gcgc
//
LOCUS       DASVXZ010000099         2496 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1714050, whole genome shotgun sequence.
ACCESSION   DASVXZ010000099 DASVXZ010000000
VERSION     DASVXZ010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1714050"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..783
                     /locus_tag="VF788_01900"
     CDS             <1..783
                     /locus_tag="VF788_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019046154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEX8932956.1"
                     /translation="QRSGMVRALGVSGGDGTVAAAAAVAGRCGLPLVVVPTGTLNHFA
                     RDVGVYDLQEAVDATQAGEAVAVDLGVVEIHGAGRPPHTRYFLNTASLGGYSDLVRLR
                     EKWEPKWGKWPAFAAALVTSLRNARPMRVKLDGVEQRLWILFVGNGPYHPRGMVPAWR
                     PQLDSGLLDIRYLRADRRFSRARAVTALLLGALQHTRTYVQREAPTLEVELIGDHAFL
                     ATDGEVLDEAGKFIFRVAESPIAVYRRNEENWPDRPRPHHPW"
     gene            948..2144
                     /locus_tag="VF788_01905"
     CDS             948..2144
                     /locus_tag="VF788_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8932957.1"
                     /translation="MDPVRNPFAPGAGQRPPELAGRDRELAAFEVVLERVARGRPERS
                     LVLTGLRGVGKTVLLGELRSTAIRRGWGAGKVEARPDGGLRRPVSAALHRAVRDLALR
                     HRAPGRVEEVLGILKAFALRATPKDAKLRDRWQPGIDAPIVAGRADSGDIEIDLVELF
                     TEVAELAADVGTGVALLIDEMQDVAPDDVSALCAACHELSQSRAPLVVVGAGLPHLPA
                     VLSASKSYSERLFRYVRIDRLDRAEADRAVVAPIERENAAITQDALDALFETSGGYPY
                     FVQAYGKAAWDAAPVSPIGIVDVQMAAPEAEGELAVGFFGSRFERATPAEREYLQSMA
                     ELTGGRDEPVGTTQVADQLGRRASSLSPARDSLLKKGLVYSGERGQIAFTVPHFGRFL
                     LGRLAS"
     gene            2390..2496
                     /locus_tag="VF788_01910"
                     /pseudo
     CDS             2390..2496
                     /locus_tag="VF788_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985817.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
BASE COUNT          385 a          814 c          889 g          408 t
ORIGIN      
        1 cagcgcagcg ggatggtgcg cgccttaggc gtctccggcg gtgatgggac ggtggccgcc
       61 gcggcagccg tagcgggacg gtgcggcctt ccgcttgtcg tggtgccaac cggcaccctc
      121 aatcacttcg cccgtgacgt cggcgtgtac gacctgcaag aggctgtcga tgccacccag
      181 gccggcgagg cggttgcggt cgacttgggg gtggtggaaa tccacggcgc agggcggccg
      241 ccacacaccc gctacttcct caacactgcg agcctgggcg gctactccga tctggtgcgg
      301 ctgcgcgaga agtgggaacc caagtggggc aagtggccgg cgttcgcggc tgcgcttgtc
      361 acctcgttgc gcaatgccag gccgatgcgg gtgaagctgg acggggtgga acagcgactg
      421 tggatcctgt tcgtcggcaa cggcccctac cacccgcgcg gcatggtccc ggcctggcgg
      481 ccacagctgg actccgggct actcgatatc cgctacctgc gcgcggatcg gcgcttctcc
      541 cgggcccgcg ccgtcaccgc gctactgctc ggtgcgttgc aacacacccg gacctatgtg
      601 cagcgggagg cgccgactct ggaagtggaa ctgatcggcg atcacgcctt tctggcgacc
      661 gacggtgagg tcctggatga ggccggcaag ttcatcttcc gggtggccga gtctccgatt
      721 gcggtatatc ggcggaacga agagaactgg cctgatcgcc cacgaccgca ccacccctgg
      781 taaccgcgaa ccgataacca tcgttcgacg gcaaagatga cccggctcga cggtgccctc
      841 cgcgccgctc tcgaccggta gctgggcctt tcggaccgcc gacacgccga ttgcggtcta
      901 ttgcggaatc tgcggttgac gctagacagc cggatactgt ccgagacatg gatccggtgc
      961 gcaacccgtt cgcccccggc gctggccagc gaccacccga actagccggg cgagatcgtg
     1021 aattggctgc cttcgaggtg gtgctggaac gggtcgctcg gggaagaccg gaacgctcgc
     1081 tggtgctgac gggcctgcgt ggggtcggca agacggtgct gctcggcgag ctccggtcga
     1141 cggcgatacg ccgcggatgg ggcgccggca aggtcgaggc ccggccagat ggaggactgc
     1201 gccgcccggt gtcggccgcg ctacaccggg cggttcgcga tctggcactg cgccaccgtg
     1261 caccgggtcg ggtggaggag gtactcggga tactcaaggc gttcgcgctg cgcgccacgc
     1321 ccaaggacgc caagctgcgg gatcgctggc agccgggcat cgatgcgccg atcgtcgcag
     1381 gccgggccga ctccggagac atcgaaatcg acctggttga gctgttcacc gaggtcgccg
     1441 agctggccgc cgatgtcggc accggggtgg cgctgctgat cgatgagatg caggacgtgg
     1501 cacccgatga cgtatccgct ctgtgtgccg catgccacga gttgtcccag tcccgtgcgc
     1561 cgctggtggt ggtcggcgcc gggttaccgc atctgccggc ggtgctcagc gcgtcgaagt
     1621 cctactccga gcggttgttc cgctacgtgc ggatcgatcg gctcgaccgc gccgaagccg
     1681 accgcgcggt ggtcgcgccg atcgagcggg agaacgccgc gatcacccag gatgcgctcg
     1741 acgcgctgtt cgagacctcc ggcggttacc cctatttcgt gcaggcctac ggcaaggccg
     1801 catgggacgc cgccccggtc tcacccatcg ggatcgtcga cgtccagatg gccgcccccg
     1861 aggccgaggg cgaacttgcc gtcgggttct tcggctcccg gttcgagcgg gccaccccag
     1921 ccgagcggga gtacctgcag tcgatggccg agctcaccgg tggtcgggac gagccggtcg
     1981 gcactacgca ggtcgccgac cagctcggtc gccgagcttc gtcactgtcg cccgcgcggg
     2041 acagcctgct caagaagggg ctggtctact ccggagagcg cgggcagatc gcgttcaccg
     2101 tcccacattt cggacgtttc ctgctgggga ggctggcgag ctgatccaga ggaactagcc
     2161 cgaacgagtg aatcggcggc gggtcggcag ggcgttgtaa cagggtcgtg gcgcactgcg
     2221 atgagactga tagccccgtg atgctgttgg acccccgacc cggcagcctc acggggcctt
     2281 ctcatgcgag cctggtgcgc cgcgaagcgt cgaggtacgg gccgtaccga gtgctgccga
     2341 ggcagcacgt accctcttcg ccgtggctga aagcaagctc gagattcaga tgctccacga
     2401 ccgcgtcatc gtgcgccttg tgggtggaga cggcgaacgg cgcagcagcg ggggggattc
     2461 tgatcccggc aacggcccag gtagccaagc ggttgt
//
LOCUS       DASVXZ010000100         1931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1260618, whole genome shotgun sequence.
ACCESSION   DASVXZ010000100 DASVXZ010000000
VERSION     DASVXZ010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1260618"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1101
                     /locus_tag="VF788_01915"
     CDS             <1..1101
                     /locus_tag="VF788_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEX8932958.1"
                     /translation="GRWQARYPGPDGRLRSAPHTFERKGDASNWLADKRTEINRDEWI
                     DPDAGKVTFGAYAAIWMKERDLADTTAERYEGILRNYIEPHLGRRALSEIKEPAIRQW
                     RKSLQDAGVGAATIAKAYRMVHSMFNTAVDDLLIRRNPCRIKRAGQDKADERPTLTIE
                     QVFAVADAIQPRYRLLVLLGALTSLRFGEFAALRRRDVDVEVGELRVRRSQAEMKHGR
                     TIIKDPKSEAGKRSVAIPDVVLADLRDHLGQFSEAGQDGLVFVGPKGGRLRRRNFLRQ
                     WTKALTDAKVVNEDVHFHDLRHTGNALAAATGASTKELMARMGHSSIRAALIYQHASR
                     SRDKQIADAISQNVQQARRKGHARGTAEGGTG"
     gene            complement(1166..1238)
                     /locus_tag="VF788_01920"
     tRNA            complement(1166..1238)
                     /locus_tag="VF788_01920"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1203..1205),aa:Ala,seq:tgc)
     gene            complement(1273..1380)
                     /locus_tag="VF788_01925"
     CDS             complement(1273..1380)
                     /locus_tag="VF788_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DLW-39 family protein"
                     /protein_id="HEX8932959.1"
                     /translation="MALLLVGLVALILVQRQRSAKAEADLWREATTPNV"
     gene            complement(1427..1500)
                     /locus_tag="VF788_01930"
     tRNA            complement(1427..1500)
                     /locus_tag="VF788_01930"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1464..1466),aa:Ile,seq:gat)
     gene            complement(1567..>1931)
                     /locus_tag="VF788_01935"
     CDS             complement(1567..>1931)
                     /locus_tag="VF788_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013221962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3566 domain-containing protein"
                     /protein_id="HEX8932960.1"
                     /translation="PRQTSLQLKRLDPWSVLKISLVLSVCGFLVWLVAVGVLYGVLAG
                     MGVWDQINGTYSDLTSANNPQLNTQLVSGGRVFGVAFVIGLVNIVLMTALATVGSLVY
                     NIAADFVGGVEVTLSEPD"
BASE COUNT          408 a          594 c          602 g          327 t
ORIGIN      
        1 ggtcggtggc aggcacggta tccaggtcca gacggcagac tccggtcagc gccgcacacg
       61 ttcgagcgga agggggacgc gtcgaattgg ttggccgaca agcgaacgga gatcaaccgg
      121 gacgagtgga tcgacccgga cgcgggcaag gtcaccttcg gtgcttacgc cgcgatctgg
      181 atgaaggaac gcgacctggc ggacacaacc gcggagcgct acgaggggat tctgcgtaac
      241 tacattgagc cgcaccttgg taggcgggcg ttgtccgaga tcaaggagcc agctattcgg
      301 cagtggcgga agagtctgca agatgctggc gtaggcgcgg ccaccattgc gaaggcgtac
      361 cggatggtgc actccatgtt caacacggcg gttgacgact tgctcatccg ccgcaacccg
      421 tgccggatca aacgtgctgg gcaggacaag gcggatgaac gaccaacgct gacgatcgag
      481 caagtgttcg cggtagctga cgcgatccag cctcgttacc ggctactggt cttgcttggt
      541 gcgcttacca gcctccggtt cggagagttt gccgcgttgc ggcggcggga cgtagacgtg
      601 gaggtcggtg agctgcgggt ccgccggtcg caagccgaaa tgaagcacgg ccggacgatc
      661 attaaggatc cgaagagcga ggctggcaag cgctcagtcg cgatcccgga tgttgtgctc
      721 gctgacctgc gagatcatct agggcaattc tccgaggctg gacaggatgg tctggtgttc
      781 gtcgggccaa aaggcggccg gttgcggcgc cgcaacttcc tccggcagtg gaccaaggcg
      841 ttgacggacg ccaaggttgt aaacgaagac gtgcactttc acgatctccg ccacaccggc
      901 aacgcacttg cggcggccac gggtgcgagc accaaggaac taatggcccg gatggggcac
      961 tcatccattc gagctgcgct gatttaccag cacgccagcc ggagtcgtga caagcagatc
     1021 gccgatgcga tcagccagaa tgtccaacaa gctcgacgga aggggcacgc gaggggcacg
     1081 gcagaaggag ggacgggctg atgcttacga ctcagccaac gtcattaccc tgcctgacct
     1141 gggtttatgt gtgtggccga tgtcgtggag acgaagggac tcgaaccctc aacccccgcc
     1201 ttgcaaaggc ggtgctctac cagttgaact acgtccccgg ctccaggcgt gacatgcacg
     1261 cccggcaacg actcagacgt tcggggtcgt ggcctcacgc cacaggtccg cttccgcctt
     1321 cgccgagcgc tgacgctgga ctaggatcaa cgccaccaga cccacgagca acaatgccat
     1381 aatcttcttc acgatggatc gcctcctccg agtggttctt caccagtggg cctagctgga
     1441 cttgaaccag cgacctcatc cttatcaggg atgcgctcta accgactgag ctataggccc
     1501 ccgcacgacc ccggcgaggt taccgcaccg cctctccaga gcccaatcgg catgcgggag
     1561 cgcggatcag tccggttcgg acagggtgac ctcgacgccg ccgacgaagt ccgccgcgat
     1621 gttgtagacc agcgatccta cggtggccag tgcggtcatc aatacgatgt tgaccagccc
     1681 gatcacgaac gctaccccga acacccgccc gccgctgacc aactgagtgt tcagctgagg
     1741 attgttcgcc gaagtcagat cagagtaggt gccgttgatc tggtcccaca cccccatccc
     1801 tgcgagcact ccgtagagca cccccacagc cactagccaa accagaaaac cacacaccga
     1861 cagcaccagc gaaatcttga gcactgacca tggatcgagt cgtttgagct gcaggctcgt
     1921 ctgtcgcgga a
//
LOCUS       DASVXZ010000101         1891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_901984, whole genome shotgun sequence.
ACCESSION   DASVXZ010000101 DASVXZ010000000
VERSION     DASVXZ010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901984"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VF788_01940"
     CDS             complement(<1..192)
                     /locus_tag="VF788_01940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932961.1"
                     /translation="MLHITSGTLVGILLAGCGFEGSGNEETANRSVEHTRGIVFNTAS
                     KDVTLFDPATNEVTGTRPTS"
     gene            complement(637..1212)
                     /locus_tag="VF788_01945"
     CDS             complement(637..1212)
                     /locus_tag="VF788_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8932962.1"
                     /translation="MPNLWNETMEAHRVAVRDAILDTTWALVTEHGLTSVTMSQIAEK
                     TGIGRATLYKYFPDVEAILFAWHQRHVTGHLEHLAELRDQAGDAGERLEAVLEAYALI
                     SYHREHHGTELAALLHRGDQVARAQQQLIDMIRDLLTEVAETGELRDDVAPDELASYC
                     LHALTAASSLPSKAAVRRLVTVTLAGLRPPR"
     gene            1347..1625
                     /locus_tag="VF788_01950"
     CDS             1347..1625
                     /locus_tag="VF788_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005438320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932963.1"
                     /translation="MPDRPPDPDTGDDTRVRPTADRPPSTPRWVKVFGIIAIVVVLIF
                     VVIRFTGVGGSHGPGRHTPSGNVGGQEAPLSNVTLSSVTEDYTPPGGY"
     gene            1625..>1891
                     /locus_tag="VF788_01955"
     CDS             1625..>1891
                     /locus_tag="VF788_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005438322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 domain-containing protein"
                     /protein_id="HEX8932964.1"
                     /translation="MTMAPRLRKFALAAHITLAVGWIGAVAGYIALDVAAATRQDAQT
                     LRAAYLAMELIAWYVIVPLALASLLTGLVMSLGTKWGLFRHYWVL"
BASE COUNT          334 a          597 c          579 g          381 t
ORIGIN      
        1 gctggtcggt cgggtaccgg tgacctcgtt ggtggcggga tcgaacaagg ttacgtcctt
       61 ggaggcggtg ttgaagacta ttccacgggt atgctctaca ctgcggttcg cggtctcctc
      121 attacccgac ccttcgaagc cgcaaccggc cagcagaatc ccaaccagag ttccgctggt
      181 tatgtgtagc atcctccggc gggttaccgt ccgctccagg agcggtgtgg cgaccctgag
      241 atcccttgca aggtcggacg aaccgcccga cgaggcgtag ggacctcagg tcggctcgac
      301 cgcgcacctg ggtagcttct ttggcgttgc ccccaaccaa ttcggatcta tcgacatgct
      361 cgctcgccta tagtcacctt aaacttatat gatccaatga tcgaacgttc tgtgaggagc
      421 ctcttatcaa gtgaacacta ccaattacag ctccggcgcg gcgagggtgg cggggtctcg
      481 gtcggctccc tctaccaatc ttcggcgact ggcaccagtg tggtacatct cctggaactc
      541 tcctggaaca tcactccccc gtccgcggag gacaggctga tactctcgca gcgaagcggt
      601 gaggagggct tccggctcca gcggcatcgg aacgagtcag cgcggggggc gcaacccagc
      661 cagcgtgacc gtgacgagcc ggcggaccgc ggccttggac ggcaggctgc tggctgctgt
      721 gagggcgtgg aggcagtagc tcgcaagctc gtcaggcgcg acatcgtccc ggagttcgcc
      781 ggtctctgcg acctcggtca gcaggtctcg gatcatgtcg atgagctgct gctgcgcccg
      841 ggcgacctga tcacctcgat gcaggagtgc cgcgagttcg gtgccgtggt gctcgcggtg
      901 gtaggagatg agcgcgtaag cctcgagcac cgcttcgagc cgctcgccag cgtcgccagc
      961 ttggtcccgg agttcggcaa gatgttcgag gtggccggtg acgtgacgtt ggtgccaggc
     1021 gaacaggatc gcttcgacgt ctgggaagta cttgtacagc gttgcgcgtc caatgccggt
     1081 cttctcggcg atctgcgaca tcgtcaccga cgtcagcccg tgctcggtca ccagcgccca
     1141 agtggtgtcc aggatcgcgt cgcgcaccgc cacgcggtgc gcctccatcg tctcattcca
     1201 caggttcggc acgaccccag tatacacccc tgtatacgtg acgtcgatgt ctagacatat
     1261 tgctttgaca gagacacatt gtatcgataa actgttgccg tcatgaatga aaaccgtgac
     1321 aaccacgcac gccagaggag acgcagatgc ctgaccgacc ccccgacccc gacaccggcg
     1381 acgacacccg cgtgaggccg accgcggatc gaccgccaag cacaccacgc tgggtgaagg
     1441 tgtttgggat catcgcgatc gtcgtggtcc tgatatttgt cgtcatccga ttcaccggcg
     1501 tcggtggtag tcatggccct ggtcgccaca caccgtccgg gaacgttggt ggccaggagg
     1561 caccgctctc caacgtcaca ctctccagcg tcacagaaga ctacaccccg cccggtggct
     1621 actgatgacc atggcaccgc gcctccgcaa gttcgcgctc gccgcgcata tcactctcgc
     1681 ggtcggctgg attggcgcgg tcgctggcta tatagctctc gacgttgccg ctgcgaccag
     1741 acaggatgct cagacgttgc gcgccgccta tctcgcgatg gagttgatcg cctggtatgt
     1801 catcgtcccg ttagcccttg cctcgctgct aaccgggctt gtcatgtcac tgggaaccaa
     1861 gtggggcttg ttccggcact attgggttct g
//
LOCUS       DASVXZ010000102         2453 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_11052, whole genome shotgun sequence.
ACCESSION   DASVXZ010000102 DASVXZ010000000
VERSION     DASVXZ010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11052"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            281..1111
                     /locus_tag="VF788_01960"
     CDS             281..1111
                     /locus_tag="VF788_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011020875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEX8932965.1"
                     /translation="MAPFHQADGVSRTRRYPSDTTDAQWAVIDPLLPDPAWLAGQGGR
                     REVHCRRAIVDAIFYVVDNGIKWRALPTDFPPWSTVYNYFAGWEAAGVTQDVLDGLRD
                     RLRLREGRAAAPSAAIIDSASVKAAETVGAASRGYDAGKKINGRKRHIAVDTLGLLLC
                     VLVTAASVQDRDGAKPLLELLAASFRRIRLVWADGGYAGKLVVWATEHFRLRLQIVKR
                     SDNATGFVVLPRRWVVERTLAWIARHRRCVRDYERLPTHHEAMVRWSMIRITSQRLAK
                     "
     gene            1200..1661
                     /locus_tag="VF788_01965"
     CDS             1200..1661
                     /locus_tag="VF788_01965"
                     /inference="COORDINATES: protein motif:HMM:NF014430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8932966.1"
                     /translation="MFADDLGYRALVRLPGVGPVFAAILRAEIGEITRFPSPRQLNSW
                     AGLTPRHRESDTTIHRGGITKQGSRLVRWAMVEAVQRARLGTPMRNCYDQIVARRGGT
                     AKHLAKVAAARELCECVFYALRDGHVRRLGHCRTAGISVRTTPVGARPSIV"
BASE COUNT          439 a          853 c          751 g          410 t
ORIGIN      
        1 atcaggttgg atacccacgg ggccagaatt caaaccaccg tggcaccgtc cagatcaccg
       61 cgtaacgagc cgccgcatcg ccccggccaa gcactatcca cgtcccctga ccgtccttag
      121 agcctgttcc tgaactgatc ttgtggcggc gtgtcgccgc tgttaacgga agaactcctg
      181 gtagatcgag cggtgctgaa acgccgttct accaggagtt ccgttgctat cgtgccgcat
      241 cctgcctgct gatgccgccc cggatcaggc gtgttgtcgt ctggcgccat ttcatcaggc
      301 agacggtgtt agtcgtactc gccgctatcc ctcggatacc acggatgcgc agtgggcggt
      361 gatcgatccg ctgctgccgg atccggcctg gttggccgga cagggagggc gacgggaggt
      421 ccactgtcga cgcgcgatcg tggacgcgat cttttacgtg gtcgacaacg gcatcaagtg
      481 gcgggcgctg cccaccgact tcccaccctg gtccacggtg tacaactact tcgctggctg
      541 ggaggccgcc ggagttactc aggatgtgct cgacggtctg cgtgatcgtc tccgtctgcg
      601 cgagggtcgg gcggccgcac catcggcggc gattatcgac tcggcctcgg tgaaggcggc
      661 tgagactgtc ggtgctgcca gcaggggtta tgacgcaggc aagaagatca acggccggaa
      721 acgccacatc gccgtcgata ccctcggcct gctgctatgc gtcctggtga cagcagcctc
      781 ggtgcaggat cgtgacggcg ccaagcctct gctcgaactg ctggcggcct ccttccggcg
      841 catccgcctg gtatgggctg acggcggcta cgccggcaag ctcgtcgtct gggccacaga
      901 gcatttccgt ctgaggctgc agatcgtaaa acgatccgac aacgcgaccg gctttgtggt
      961 cctgccccga cgctgggtcg tggaacggac attggcctgg atcgcccggc accgccgatg
     1021 cgtccgcgac tacgaacgcc tccccaccca ccacgaagcc atggtccgct ggagcatgat
     1081 ccgcatcacc agccaacgac tcgccaaata agttcaggaa caggctctta gactcccagc
     1141 tgcgcctgat cgacgctatc gagcaagaga tcgacgagct tgatgagcgc atccgcgcga
     1201 tgtttgctga tgatctgggt tatcgagcgt tggtgcgcct gcccggcgtt ggcccggtgt
     1261 tcgccgcgat cttgcgcgcc gagatcggtg agatcacccg gttcccttcg ccacgacagc
     1321 tcaactcctg ggccgggctc accccacgcc accgcgagtc agacaccacc atccaccgtg
     1381 gtgggatcac caaacaagga tcgcggctgg tgcgctgggc gatggtggag gccgtgcagc
     1441 gagctcgtct gggaaccccg atgcgtaact gctacgacca gatcgtggcc cgccgcggcg
     1501 gcaccgccaa gcacctggcc aaggtcgccg ccgcccgcga gctgtgtgaa tgcgtgttct
     1561 acgcgttgcg cgatggacac gtgcgccgtc tcggacactg ccgcaccgcg ggaataagcg
     1621 tgcggaccac cccggtgggt gcgcggccga gcattgtctg agcacctcgt cgcgctcgct
     1681 aacttgattg gtcccacccg ccggggacgc cgaaacgctc catgccgcca ccccgcggcg
     1741 aagggatgac cggcagccca cgttgcgggc ctgcccccca cacacgacga gccctggaga
     1801 ccgaccagcg tccgccaacc cgcacgaccg cacgggaagg acacccgcga cacactttct
     1861 ctctcctccg ccgccatagc ctgcgccgaa cgtcggcgtc gacgtcaagg acctccggcc
     1921 gctgacgcgg tcagccctca cgggccgctc cttgaccccg acgccgcaac cggcgctgcc
     1981 caaaaatggc tcttctgccg tttccgtggg tgccgtccgg gggcgctgcg cagcctgcgg
     2041 ggccactcct cccaggtcca gggcgcctac ggcgtcgctg cgcgatggcg ccacgcgcca
     2101 ccctggacct gcgagcctcg gcggcccctc cgggcagcat tgcgggcagg ccatggcctg
     2161 ccctccacaa cgcgcagcgc ccccggacag cacagctgag ctggactgat caacacatcg
     2221 gcccgttaac gcaggtcagg acaccgcagc ggactgatca agaccaccca cggaaacagc
     2281 agtaggtccc caaaacagcg gagaccgaca gaaaaagatc agcaaccgag gtaacaccaa
     2341 ggcttgatac ctacagtcct ttcagggatg acaatgccca tccggttatc cgctatcccc
     2401 gccgaagagc gcatcattgt gcgacgcgcg atcaagctgc ttaccatggc ccg
//
LOCUS       DASVXZ010000103         3173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_280456, whole genome shotgun sequence.
ACCESSION   DASVXZ010000103 DASVXZ010000000
VERSION     DASVXZ010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280456"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VF788_01970"
     CDS             complement(<1..243)
                     /locus_tag="VF788_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932967.1"
                     /translation="MIGVQLWRVVGAVFLLLYAQHELPASFTTPAGIGDVLVGLTAPF
                     IALLAASGTSTARQIVIGWCVLGIVDLVVAVTMGVLN"
     gene            complement(255..473)
                     /locus_tag="VF788_01975"
     CDS             complement(255..473)
                     /locus_tag="VF788_01975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932968.1"
                     /translation="MSSDIELSRTRLVVIISVAAWFLAALGAYLPGLQQTGPSSRRSP
                     SSWRYWRHYCWEGWPMRGRPGFGACCWI"
     gene            571..966
                     /locus_tag="VF788_01980"
     CDS             571..966
                     /locus_tag="VF788_01980"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8932969.1"
                     /translation="MRRAPATEAADDGAGASRVRGRSPCPVAGALDLVGDRWTLLVLR
                     DLLAGKTRYGQFLASPERISTNLLADRLARMEAAGLVSAVPYSKHPVRMDYQLTAAGR
                     ALRPVVDALASWGLTHLPGTHALLEPTAD"
     gene            1370..3070
                     /locus_tag="VF788_01985"
     CDS             1370..3070
                     /locus_tag="VF788_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8932970.1"
                     /translation="MTTAAKAFTAVRDFLIEHRDDYQAAYEGFQWPELEEFNWALDWF
                     DPLARGNHQPALWIVEQDGSERKLSFDEMARRSDQVANWLRSLGVMRGDRIVLMLGNE
                     VELWESILAAMKLGAVIIPAAPLLGEIDLRDRIDRGNARHVIAAAAEAAKFDGVPGGY
                     TRIAVGDQVAGWQPYADAYGQPAEFIPDGITRASDTLLLYFTSGTTAQPKLVEHTHVS
                     YPVGHLSTMYWIGLQPGDVHLNVSSPGWAKHAYSNVFAPWIAQATVFVYNCDRFDATR
                     LLETIQRAGVTTFCAPPTAWRMLIQADLSGGRGHLREVVGAGEPLNPEVIDQVGRAWG
                     LTVRDGYGQTESTVQIGNSPLQVIKPGSMGRPLPGYSVALVDPVSGEPGDEGEICLDL
                     SRRPLGLMVGYCDDEEHTAEVMREGYYHTGDMARRDAEGYITYIGRNDDVFKASDYRI
                     SPFELESVLLEHEAVAEAAVVPAPDPLRLAVPKAYVALSASHQPSRDTALSILRYVWE
                     NLAPYKRVRRLEFAELPKTISGKIRRVELRSREVDLHSAGSADARREWRDEDFPELRA
                     "
BASE COUNT          574 a          989 c         1076 g          534 t
ORIGIN      
        1 gttgagcacg cccatcgtga ccgcgacaac gaggtccacg atcccgagga cgcaccatcc
       61 gatgacaatc tgcctggcag tgctggtgcc ggaggcagcc aggagggcga tgaagggtgc
      121 agtgagcccg acaaggacgt caccgatccc ggccggggtg gtgaaacttg cgggcagttc
      181 gtgttgggcg tagaggagca ggaacaccgc gccgacgact cgccacagct ggacgccgat
      241 caaccagcgc aggtctatat ccagcagcag gcgccgaagc cgggccgacc gcgcataggc
      301 cagccctccc agcagtaatg gcgccagtag cgccaactcg atggggatcg gcggctggag
      361 ggtccggtct gctgcaggcc gggcaggtat gcgccgagcg cggccaggaa ccacgccgcg
      421 actgagatga tcaccactag ccgggtgcgg gacagttcga tatcggatga catgggtggc
      481 tcctcccaac agtgacttgc gttttgcaag ttactcacac tgtaaagggt gagagttgca
      541 aagtgcaagt cgctagctaa gatggtgctt atgcgtcgag cacctgccac tgaagcggcg
      601 gacgacggag ccggtgccag cagggtgagg gggcgctcgc cgtgcccggt cgcgggagca
      661 ctcgatctgg tgggtgaccg gtggacgctg ctggtcctgc gcgacctgct ggccggcaag
      721 acccgctacg gccagttcct cgcctcgccg gaaagaatct ccacaaatct gttggcagat
      781 cggttggcgc ggatggaagc ggcgggtctg gtctccgccg tgccctacag caagcacccg
      841 gtgcggatgg actaccagct gaccgcggcc ggacgggcgc tgcgcccggt agtcgacgcg
      901 ctggccagtt gggggctcac gcacctaccc ggaactcacg ccctgctcga accgaccgcc
      961 gactgaccag ccgctcgcca actcacctcg tattgcgcac cccggcggcg atcccgttga
     1021 cggtctgcag caggttccgg cgcagatccc gatctggcca cggtggtatg agccggcggc
     1081 ggcgttgggt ctaagctgag cgccggctta atgcggcagg tttgcctcgc gtgtatcagc
     1141 gagccaggcg cccttctctc caagagacga ctcctgacct cacactctcg agaagatcgt
     1201 tcaagttgac gatgaacgct gccgttggta ggaggctccg gatggaaccg accagatcgc
     1261 cgtggaatac agctccgaac aacccatcgg ctgggaaatc gtgaaagaac catgcttgtg
     1321 tccgcgccag tgaagcacat gtgatcgccg aaaggagtag ctgagcacga tgactacggc
     1381 tgccaaagcg ttcactgccg tccgtgattt cctcatcgag caccgcgatg actaccaggc
     1441 agcctacgag ggcttccagt ggccagagtt ggaggagttc aactgggcac tggattggtt
     1501 cgacccgctg gcccgcggca accaccagcc cgcgttgtgg atcgtcgagc aggacggttc
     1561 agagcggaag ctgagttttg acgagatggc gcggcgctcg gatcaggtcg cgaactggct
     1621 gcgcagcctg ggggtcatgc gcggggaccg catcgtcctc atgctgggta acgaggtgga
     1681 gctgtgggag tcgatcctgg cggcgatgaa gctcggcgcg gtgatcatcc cggctgcccc
     1741 gctgctcggc gagatcgact tgcgcgaccg gatcgaccgc ggtaacgccc ggcacgtgat
     1801 cgccgcggca gccgaggccg ccaagttcga cggggtgccc ggtggataca cccgcatcgc
     1861 ggtcggcgat caggtcgcgg gctggcaacc ctacgccgat gcctacggtc aacccgccga
     1921 attcatcccg gacgggatca ccagggcaag cgacacattg ctgctgtact tcacctccgg
     1981 gaccactgct caacccaagc tggtggagca cacccacgtc tcctacccgg tcggtcacct
     2041 gtccacgatg tactggatcg gattgcagcc cggcgacgtg cacctgaacg tctcctcacc
     2101 aggttgggcg aagcacgcct atagcaacgt gttcgccccg tggatcgcgc aggccacggt
     2161 gttcgtctat aactgtgacc ggttcgacgc cacccgcctg ctcgagacga ttcagcgagc
     2221 cggtgtgacg acgttctgcg cccctcccac cgcgtggcgg atgctgattc aggccgacct
     2281 gtccgggggc cggggacacc tgcgggaggt tgtcggggcc ggtgaaccgc tcaacccgga
     2341 ggtcattgac caggtgggca gggcgtgggg gctcactgtg cgggatgggt acgggcagac
     2401 cgagagcacg gtacagatcg gcaactcacc tttgcaggtg atcaagcctg gttcgatggg
     2461 acgcccactg cccggctatt cagtcgccct ggtcgacccg gtcagcgggg agccgggcga
     2521 tgagggagag atttgcctcg acctctcccg gcggccgctg ggcctgatgg ttggctactg
     2581 cgatgacgag gaacacaccg ccgaggtgat gcgggagggc tactaccaca ccggggacat
     2641 ggcccgccgc gacgctgagg gctacatcac ctatatcggg cgcaacgacg atgtgttcaa
     2701 ggcctccgac taccggatct caccgttcga gctggaaagc gtgctgcttg agcacgaggc
     2761 cgtcgcggaa gcagcggtcg tacccgcacc ggacccgctt cgcctggcgg tgcccaaggc
     2821 gtacgtcgca ttgtcggcta gtcaccagcc gtcccgggac actgcgctgt cgatcctgcg
     2881 ctatgtgtgg gagaacctcg ctccctacaa gagggttcgc cggctcgagt tcgccgagtt
     2941 gcccaagacg atctcgggca agatccggcg ggtagagctg cgtagccggg aagtcgacct
     3001 acactccgca ggaagtgccg acgcccgccg tgagtggcgt gacgaggact tcccggagct
     3061 gcgcgcatga ggttcgccgg gaattgtcgt tgctgttgtc gcgctgcctt tccggtgcgc
     3121 tggcgtttag accaatcggg tgggcgcgaa cgcggcgggg tccagcggaa cgt
//
LOCUS       DASVXZ010000104         2263 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_722659, whole genome shotgun sequence.
ACCESSION   DASVXZ010000104 DASVXZ010000000
VERSION     DASVXZ010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_722659"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..974)
                     /locus_tag="VF788_01990"
     CDS             complement(<1..974)
                     /locus_tag="VF788_01990"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 13 protein"
                     /protein_id="HEX8932971.1"
                     /translation="MPKREAAIVTPDWVKHAVFYQVFPDRFAKSETLDKPNNLEPWDS
                     DPTPFGYKGGDLVGVRERLDYLQDLGITALYFNPIFQSASNHRYHTHDYYQVDPLLGG
                     DQAFDALVAECRRRDVRIVLDGVFNHASRGLFQFNDVLENGPASPWLDWFTVREYPPN
                     AYDHSRPPGYEAWDGLHALPTFDTDNPQVREYLMRIGEYWLGRGIDGWRLDVPSEIHS
                     DGFWQEFRQRVKAINPQAYVVGEVWSEARQWLQGDQFDGVMNYLFAEAAIAFSAGHRV
                     RRETVEGRSYDPWPGIDGRAYAAKIDHLLRLYPWPIQLSQLNLLDSHDT"
     gene            complement(1006..1767)
                     /locus_tag="VF788_01995"
     CDS             complement(1006..1767)
                     /locus_tag="VF788_01995"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8932972.1"
                     /translation="MLTREQARHWLDRWDRQQEHYLAVREERFTVIADVVQAMAGREN
                     VLIVDLGVGPGSLAVRLLDHLPKAQVVGIDADPLLLGLARTGYGDRSGLRLVHHDLRE
                     AGWVDALSLERAPDAIVSTTALHWLTGPQLAAVYRACGGLLPPGGVLVNGDHFQDGPA
                     RPRLDALTRSLAQCHTERTRPSDGEDWVAWWDAISRAPELADLVAVRRPEGVSHHLHN
                     EPTLDNHLLFLQEGGFDEVGVVWQHGDNRVLVAVR"
     gene            1827..>2263
                     /locus_tag="VF788_02000"
     CDS             1827..>2263
                     /locus_tag="VF788_02000"
                     /inference="COORDINATES: protein motif:HMM:NF018984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABATE domain-containing protein"
                     /protein_id="HEX8932973.1"
                     /translation="MTGQINFNSHTDAVIVVAVALINTATPGTRHGRAYLPPTGTDLV
                     DAINAALASGRGHPTFLDAPQAEALAMTTGQLRQVFDHVSRDDLDAAADAVNALLTAL
                     RPTPYLDRHDGQPWHLHYHSSGNEAARSWAAGCTVGLAAVLGS"
BASE COUNT          407 a          769 c          703 g          384 t
ORIGIN      
        1 gtgtcgtggc tgtcgagcag gttgagctgg ctgagctgga tcggccaggg atacagacgt
       61 agcagatggt cgatcttggc tgcataggcg cggccgtcga tgccgggcca cgggtcgtag
      121 ctgcggccct caaccgtctc acggcggacg cggtggccgg cgctgaacgc gatcgccgcc
      181 tccgcgaaca ggtagttcat cactccgtcg aactggtcac cttgcaacca ctgccgggcc
      241 tcgctccaga cctcgccgac gacgtacgcc tgagggttga tcgccttgac ccgctgccgg
      301 aactcctgcc agaagccgtc cgagtggatc tcggacggga cgtcgagccg ccagccgtcg
      361 attccccggc caagccagta ctccccaatc ctcatcagat actcgcggac ctgcgggttg
      421 tcggtgtcaa acgtgggcag ggcgtgcagc ccatcccagg cctcatagcc cggtggccgg
      481 ctgtggtcat aggcgttggg agggtactca cggacggtga accaatcgag ccacggcgat
      541 gctgggccgt tctcgaggac atcgttgaac tggaagagtc cccggctggc gtggttgaac
      601 accccgtcga gcacgatacg aacgtcccgc cgccggcact cggccaccag cgcgtcgaac
      661 gcttgatccc cgcctagcag cggatcgacc tggtagtagt cgtgggtgtg gtaacggtgg
      721 ttcgacgctg actggaagat cggattgaag tacaacgccg tgatacccag gtcttgcagg
      781 taatcaagac gctctcgcac accgacgagg tccccgccct tataaccaaa cggcgtcgga
      841 tcgctatccc agggttcgag gttgttcggc ttgtccagag tctcgctctt cgcgaaccgg
      901 tccgggaaaa cttggtagaa cacggcgtgc ttgacccagt ctggggtgac gatggcggcc
      961 tcacgtttcg gcatttccgg tacgtccgtt gacctcatcc gatagtcagc gcaccgcgac
     1021 caggacgcgg ttgtcaccgt gttgccagac cactcctacc tcatcaaagc cgccttcctg
     1081 aaggaagagc aggtgattat cgagggtagg ctcgttgtgc aggtgatggc tgaccccttc
     1141 gggtctgcgc accgccacca ggtcggcgag ttcgggtgcg cgggagatgg catcccacca
     1201 ggccacccag tcctcgccat cggatggccg agttcgctcg gtgtggcact gggcgaggct
     1261 gcgggtgagc gcgtcaagac gaggccgcgc cggcccgtcc tggaagtggt caccattgac
     1321 cagcacccca cctggaggca gtagcccgcc gcacgcccgg tacaccgcgg ccagctgcgg
     1381 accggtcagc cagtgcaggg cggtggtgct cacgatcgcg tccggtgcgc gctccagcga
     1441 cagcgcgtcg acccaaccgg cttcgcgcag gtcatgatgg accaagcgca gcccggaccg
     1501 atcgccataa ccagtgcggg caagcccgag cagcaacgga tcggcatcga tacccaccac
     1561 ctgtgccttg ggcaggtggt cgagcagccg gacagccagc gaaccggggc cgacccccag
     1621 gtcgacaatg aggacattct cgcgcccggc catagcctgc accacgtcgg cgatgacggt
     1681 gaaccgttcc tcccggacgg cgaggtaatg ctcttgctgc cggtcccacc ggtcaagcca
     1741 gtgccgagcc tgttctcgcg tcagcatccg tgttccaatc actgtcgttt taaagttaga
     1801 cagttattga cggtacaatc gtggaggtga ctggtcaaat taacttcaac agtcacaccg
     1861 atgcggtgat agtggttgct gtcgcgctta tcaacaccgc cacccccggc acccggcacg
     1921 gacgtgccta ccttccgccc accggcaccg acctcgtcga cgcgatcaac gccgccctcg
     1981 cctccggccg tgggcacccc acattcctgg acgcaccgca ggccgaggcg ctcgccatga
     2041 ccacaggaca gctgcggcaa gtgttcgacc acgtctcgcg cgacgacctc gacgccgccg
     2101 ccgacgccgt caatgcgcta ctcaccgcac tacgtcccac gccctacctc gaccgtcacg
     2161 acggccaacc gtggcacctg cactaccaca gttccggcaa cgaggccgcc aggagctggg
     2221 ccgccggctg cacggtcggc ctggccgcag tcctcggcag cga
//
LOCUS       DASVXZ010000105         1858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_370804, whole genome shotgun sequence.
ACCESSION   DASVXZ010000105 DASVXZ010000000
VERSION     DASVXZ010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370804"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VF788_02005"
     CDS             <1..236
                     /locus_tag="VF788_02005"
                     /inference="COORDINATES: protein motif:HMM:NF024857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8932974.1"
                     /translation="RGALLDQLPGAGPITLDLRSLTYLSSAGIGMLLNAAQHAAIHDI
                     PLQLQLTSCSIAARILALTGLDTTLAGTTDSTG"
     gene            complement(251..1048)
                     /locus_tag="VF788_02010"
     CDS             complement(251..1048)
                     /locus_tag="VF788_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8932975.1"
                     /translation="MEPRPQDEMADYVGRGLLDGKRALITGGDSGIGRAVAVAFAKEG
                     ADVAIAYLCEHEDARHTAGLVSAAGRRAVLLPGELADEQHATHIVEQTVQELGGLDIL
                     VNHVGTQTPAKSLEELSSEQFDYTFKVNVYSHFWTTKAALRYLPDGAAIINTASINGL
                     RGNKTLLDYSATKGAIIAFTYSLAQNLVDRQIRVNAVAPGPVWTPLIPATFPPEKTES
                     FGQQVPMGRAAQPDEIAPSYVFFAAERLSSYYTGEVLAPIGGETLPG"
     gene            complement(1226..>1858)
                     /locus_tag="VF788_02015"
     CDS             complement(1226..>1858)
                     /locus_tag="VF788_02015"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarP family serine protease"
                     /protein_id="HEX8932976.1"
                     /translation="DPVLLNSQVVRDARASVLKVRARAESCSRALEGTGFVVAPERVI
                     TNAHVVAGTDRVQVETADGTLEATVVTYDPETDVAVLKVPGLRAPVLQLASQPAVSGL
                     SGLVLGYPLDGPYTASAARVRDRIHLRGPDIYNASTVVRNVYTVRAVVRSGNSGGPLL
                     DGSGQVLGLVFGAAVDNDETGFVLADEEIADDVATASSHNVEVSTGACAS"
BASE COUNT          288 a          653 c          608 g          309 t
ORIGIN      
        1 tgcgcggcgc cctgctggac cagctacccg gggcaggccc gatcaccctc gacctgcggt
       61 ccttgaccta cctcagcagc gccggcatcg gaatgctgct caacgccgct cagcacgccg
      121 ccatccacga catcccgctg cagctgcagc tgacctcctg cagcatcgcc gcccggatcc
      181 tggctctcac cggcctggat accaccctgg ctggtaccac cgactcgacc gggtgatcag
      241 ccggctcggg ttaaccgggc aaggtctcgc cgccgatggg agcgagcacc tccccggtgt
      301 agtagctgga cagccgctcg gcggcgaaga acacataact tggcgcgatc tcgtcgggct
      361 gcgcggccct gcccatcggc acctgctgcc cgaacgattc ggtcttctcc ggggggaagg
      421 tggccggaat gagcggcgtc cagaccgggc cgggagcgac agcgttgacc cggatttgcc
      481 ggtcgacgag gttctgcgcc agcgaatagg tgaacgcgat gatcgcgccc ttggtggcgg
      541 agtagtccag cagcgtcttg ttgccccgta ggccattgat ggacgcggtg ttgatgatcg
      601 cggcaccgtc gggcagatac cgcaacgcgg ccttggtcgt ccagaaatga ctgtagacgt
      661 tgactttgaa ggtgtagtcg aactgctctg agctcagctc ctccagtgac ttcgcggggg
      721 tttgagtgcc cacatggttg accaggatgt ccaggccgcc gagctcctgc acggtctgct
      781 cgacgatgtg tgtcgcgtgc tgctcgtcgg cgagctcgcc gggcaacagc accgcgcgcc
      841 gccctgctgc ggagaccaag cccgcggtat gccgggcatc ctcgtgctcg cacaggtagg
      901 cgatcgcgac gtcagcgccc tccttggcga aagccaccgc gaccgcccgc ccgatcccgg
      961 aatcgccacc ggtgattagc gcacgcttac cgtccagcag gccgcgtccc acgtagtcgg
     1021 ccatctcgtc ctgtggcctg ggctccatct caccggtggt acccggcccc gactgctgct
     1081 gcccaggctg ctgaccatgc acattgacca cgccatcctg ttcccgcccc ccctaccccg
     1141 gaaaccccgt ccgctgtctg gatgcagagt gctctcgtag cgggctcgta taccgcagtc
     1201 tgcctccaga ctgcggatgg ggaggtcagg aggcgcaggc gccggtggag acctcgacgt
     1261 tgtggctgga ggcggtcgcc acgtcatcgg cgatctcctc gtcggcgagg acgaacccgg
     1321 tctcgtcgtt gtccacggcg gcgccgaata ccagtccgag cacctggccg gacccgtcga
     1381 gtagcgggcc acccgagtta ccgctgcgca ccaccgcgcg cacggtgtag acgttgcgga
     1441 ccacggtcga ggcgttgtag atgtcggggc cacgcaggtg gatgcggtcg cgcacccggg
     1501 cggccgaggc ggtgtagggg ccatccagtg ggtagccgag caccagcccg ctcaacccgg
     1561 agacggctgg ttgcgaagcc agttgcagca ccggggctct cagcccgggc accttgagga
     1621 ccgcaacgtc ggtttccggg tcgtaggtga ccaccgtggc ttccagcgtg ccatccgcag
     1681 tttcgacttg gacccggtcg gtgccggcga ccacgtgcgc attggtgatc acccgctccg
     1741 gggccaccac gaacccggtg ccctccaacg cccgcgagca ggactccgcc cgggcccgga
     1801 ccttgagcac gctggcccgg gcatcccgca ccacctggct gttgagcagg accggatc
//
LOCUS       DASVXZ010000106         3839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_101903, whole genome shotgun sequence.
ACCESSION   DASVXZ010000106 DASVXZ010000000
VERSION     DASVXZ010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101903"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VF788_02020"
     CDS             <1..229
                     /locus_tag="VF788_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932977.1"
                     /translation="IVAFLLPQNESSSRNKATQNGSEQPVGEVPTAGSGYPLPPLDLV
                     VPPLPPRRAAVSVAASDNGGPPMREDGDGIT"
     gene            216..755
                     /gene="nuoI"
                     /locus_tag="VF788_02025"
     CDS             216..755
                     /gene="nuoI"
                     /locus_tag="VF788_02025"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEX8932978.1"
                     /translation="MGLLDPVKGFGVTFSTMFRKVVTEEYPEVKKIPAQRYHGRHQLN
                     RHPDGLEKCVGCELCAWACPADAIYVEGGDNTEEARYSPGERYGAIYQINYLRCIGCG
                     LCIEACPTRSLTMTNEYEVADDNRQDLIYTKEDLLAPLLAGMEQPPHPMRLGESEQDY
                     YVQGPTLERRSGAVGEEHE"
     gene            752..1606
                     /locus_tag="VF788_02030"
     CDS             752..1606
                     /locus_tag="VF788_02030"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEX8932979.1"
                     /translation="MTVLSVLLTQPVPAPAPDAIGIGEAIAFWILGPLALAGGLGMVF
                     ARNAVHSALWLAQAMLCLGALYMVQQAPFLGFVQIIVYTGAIMMLFLFVLMLVGKESV
                     DSVVEVLRGQRVAAALGGLGLAVLLVATLGRAFNGVTSAGLASANTAGGGNVANLGRL
                     LFTEYLFPFELTSALLITAAVGAMVLAFTERAKQGRLTQREQVEARIRGAHPSPMPGP
                     GVFATLNSVATPALLPDGSPAPESRSELLESTNRDRLADDVRSVASAGAEPDTRSLRA
                     PADQEEQR"
     gene            1650..1949
                     /gene="nuoK"
                     /locus_tag="VF788_02035"
     CDS             1650..1949
                     /gene="nuoK"
                     /locus_tag="VF788_02035"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEX8932980.1"
                     /translation="MTPTYYLLLAALLFTIGATGVLVRRNAVVVFMCIELMLNAVNLT
                     LITFARINGTLDGQIMAFFVMVVAAAEVVVGLAIIMAIFKTRRSASVDEANLLKY"
     gene            2127..>3839
                     /gene="nuoL"
                     /locus_tag="VF788_02040"
     CDS             2127..>3839
                     /gene="nuoL"
                     /locus_tag="VF788_02040"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010244249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEX8932981.1"
                     /translation="MTEVLPSVTAAVGSAQYAWLLVALPAFGALVLLAGGRRTNAWGH
                     LLGCATVLTAFVYGVVLFSEWLGLDAAERTRELGLGTWFAVNSLQVDYGLRLDPLSLT
                     FVLLITGVGGLIHLYAIGYMEHDPGRRRFFGYFNLFVAAMLVLVLANNFVTLYLGWEG
                     VGLASYLLIGWYQDRPSAATAAKKAFLMNRVGDVGLAIAIFLIWRSLGTVRFSEVFPR
                     AGEISGPTLLAITLLLLLGACGKSGQFPLQAWLPDAMEGPTPVSALIHAATMVTAGVY
                     LIARCSPLYDLSPTGRLAVAVIGVITLMIGSIIGCAYDDIKKVLAYSTVSQIGYMVLA
                     VGLGPAGYALGIVHLLTHGFFKAALFLGAGSVMHAMHDEVDMRRMGGLAKHLPITFAI
                     FSCGYLALIGFPFLSGYYSKDAIIEAAFGAGGSWGMLFGGLALLAAGLTAFYMTRLML
                     MTFFGEERWRNLRSAEGKDYHPHESPPVMWVPMVPLAIGSLVAGYFLVSDERLARWLE
                     PSVGALAPVEAPIPAALVTVLAVLVSGLGVLVAWLVIGRNPVPVVKPEPVSLPVAAAR
                     ADLYA"
BASE COUNT          551 a         1245 c         1293 g          750 t
ORIGIN      
        1 gatcgtcgcc ttcctgctgc cgcagaacga atcgagcagc cggaacaagg cgacccagaa
       61 tggttccgag cagcccgtgg gcgaggtgcc cactgccggt tcgggctacc cgctgccgcc
      121 gctggacctg gtggtaccgc cattaccgcc tcgccgcgcc gcggtgagcg tcgccgcgtc
      181 agacaatggc gggccgccga tgagggagga tggcgatggg attacttgat ccggtcaagg
      241 gcttcggagt caccttctcc acgatgttcc ggaaggtggt gaccgaggag taccccgagg
      301 tcaaaaagat tccggcacag cgttaccacg gccgccacca gctcaaccgg caccccgacg
      361 ggctggagaa gtgcgtcggc tgcgagctgt gcgcctgggc ctgcccggct gacgcgatct
      421 atgttgaggg cggggacaac accgaggaag ctcgctactc acccggggag cgctacggtg
      481 cgatctatca gatcaactac ctccggtgca tcggctgcgg cctgtgcatc gaggcctgcc
      541 ccacccgctc gttgaccatg accaacgagt atgaggtggc cgacgacaac cgccaggacc
      601 tcatctacac caaggaggac ctgctcgcgc cgctgctggc cgggatggaa cagcccccgc
      661 atccgatgag actgggggaa agcgagcagg actactacgt gcaggggccg accctggagc
      721 ggcgttcggg tgcggtcggt gaggagcacg aatgaccgtg ttgagcgttc tgctcacgca
      781 gcccgtcccg gcgcccgcgc ccgacgccat cggtatcggg gaggccatcg cgttctggat
      841 actgggcccg ctcgcgctgg cgggtgggct gggcatggtg ttcgcccgta atgcagtgca
      901 ttcggcattg tggctggcgc aggccatgct gtgtctgggt gcgctgtaca tggtccagca
      961 agcgccgttc ctggggttcg tgcagatcat cgtctacacc ggcgcgatca tgatgttgtt
     1021 cctgttcgtg ctgatgctgg tgggtaagga aagcgtcgac tcggtggtcg aggtactgcg
     1081 cgggcagcga gttgcggccg cattgggggg gctcgggctg gccgtgctgc tggtggcgac
     1141 gctgggccgg gccttcaacg gagtcacctc cgccggtttg gccagcgcga acaccgcggg
     1201 cggtggcaac gtcgccaacc tcggccggtt gctgttcacc gagtacctgt tccccttcga
     1261 gctcacgtca gcgctgctga tcaccgccgc tgttggcgcg atggtgctgg ccttcaccga
     1321 gcgcgccaag cagggcaggc tgacccaacg cgagcaggtg gaagcccgga tccgcggggc
     1381 acatccctcc ccgatgcccg gccctggggt attcgccact ctcaattcag tggccacgcc
     1441 ggctctgctg ccggatgggt cgcccgctcc cgagtcgcga tccgaactgc tcgagtccac
     1501 caatcgcgac cgtctggccg atgacgtacg tagtgtcgcc agcgccggcg cggagcccga
     1561 cacccggtcc ttgcgcgcac ccgctgacca ggaggagcag cgatgacggc tcgaccctgc
     1621 aagcgcgtct gtaccgacgt gactccgaca tgactccgac ctactacctg ctgctcgcgg
     1681 cactgctgtt caccatcggc gcgaccggag tgttggtgcg ccgcaacgcg gttgtggtgt
     1741 tcatgtgcat cgagctgatg ctcaacgcgg tcaacctgac cctgatcacc ttcgccagga
     1801 tcaacggcac cctagatggg cagatcatgg cgttcttcgt gatggtggtg gcagccgccg
     1861 aagtggtggt cggcctggcc atcatcatgg ccatcttcaa gacccgtcgt tcagcctccg
     1921 tagacgaagc caacctcctc aagtactgag ccgcacttcc tgatcatcat tctgatgctg
     1981 ttcaccggga gcgatgaggg ggtggtggtc tgtcatggtc acccccctaa actgacggga
     2041 cggtgacgac gtggtagccg gtgctgcctc ggtgcgccgg agtgctgcca gcctgcttgc
     2101 tcataccgac gaacggagta cccggcatga ctgaggtctt gccttcagtg actgccgccg
     2161 ttggttccgc tcagtatgcg tggctgctcg ttgcgttgcc ggctttcggc gcgctggtgc
     2221 tgctggctgg tggtcgccgc accaatgcct ggggccacct gctgggctgc gcgacggtgc
     2281 tcaccgcctt cgtctacggc gtggtgctgt tctccgagtg gctgggtctc gacgccgccg
     2341 agcggaccag ggagttgggc ctcggcacct ggttcgcggt gaactcgctg caggtggatt
     2401 acggcctgcg gctggatccg ctgtcgctga ccttcgtgct gctcatcacc ggtgtcggcg
     2461 ggctgatcca cctctacgcg atcgggtaca tggagcacga tcccggccga cgacggttct
     2521 tcgggtattt caacctgttc gtcgcagcca tgctcgtatt ggtgctggcc aacaacttcg
     2581 tcacgctcta tctcggttgg gaaggcgtgg gcctggcctc ctacctactg atcggctggt
     2641 accaggatcg cccgagcgct gccacggcgg cgaagaaggc cttcctgatg aaccgggtcg
     2701 gcgacgtcgg tctggccatc gcgatcttcc tgatctggcg gtcactgggc acggtgcggt
     2761 tctccgaggt gttcccgcgt gccggggaaa tcagcggtcc taccctgctg gcgatcaccc
     2821 tgttgctgct gctcggggcc tgcggcaagt ccggccagtt cccgctgcag gcctggttgc
     2881 ccgacgcgat ggagggcccc accccggtct ccgcgttgat ccacgccgcg acaatggtca
     2941 ccgccggggt gtacctgatc gcccggtgca gcccgctcta tgacctcagt cccactggcc
     3001 ggctggccgt cgcggtgatc ggggtgatca ccctgatgat cgggtcgatc atcggctgcg
     3061 cctacgacga catcaagaag gtgctggcct actccacggt cagccagatc ggctacatgg
     3121 tcctcgccgt cgggttgggg ccggccggat acgcgctggg catcgtgcac ctgctcaccc
     3181 acggcttctt caaggccgcg ctgttcctcg gtgccggctc ggtgatgcac gcgatgcacg
     3241 acgaggtcga catgcgccgg atgggcgggc tggccaagca cctgccgatc accttcgcca
     3301 tcttcagctg cggctacctg gcgctgatcg gattcccctt cctgtccggc tactactcca
     3361 aggatgcgat catcgaggcg gcgttcggcg ctggcggttc ttgggggatg cttttcggtg
     3421 gcctcgcgtt gctggcggct gggctgaccg ccttctacat gacccgcctg atgctcatga
     3481 cgttcttcgg cgaggaacgc tggcgcaacc tgcgcagcgc cgagggtaag gactaccacc
     3541 cgcacgagtc cccgccggtg atgtgggtgc cgatggtgcc gctggcgatc ggctcgctgg
     3601 tcgccggtta cttcctggtt tcagatgagc ggttggcgcg ctggctggag ccctcggtgg
     3661 gcgcattggc gcccgtcgag gcgccgatcc cggctgcgct ggttacggtg ctcgctgtgc
     3721 tggtctccgg gttgggtgtg ttggtggcct ggttggtcat cggccgcaac cccgtgccgg
     3781 tcgtcaagcc cgagcccgtc tcgctgccgg tggccgcggc ccgggccgac ctgtatgcc
//
LOCUS       DASVXZ010000107         3545 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_191298, whole genome shotgun sequence.
ACCESSION   DASVXZ010000107 DASVXZ010000000
VERSION     DASVXZ010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191298"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2780)
                     /locus_tag="VF788_02045"
     CDS             complement(<1..2780)
                     /locus_tag="VF788_02045"
                     /inference="COORDINATES: protein motif:HMM:NF019974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate- and nitrite sensing domain-containing
                     protein"
                     /protein_id="HEX8932982.1"
                     /translation="MTALLSSNVDSPAGSPPETTRSRWYWRNWPVVVKLAAVLLVPTI
                     VALVAGVLRIVDQAGAAPGYVRITEIVRVQQQLSDLIGAMGRERDLATTFVATGRMGD
                     RRGLDAQFRAVDDGARVVAVAAGQVNGLGFSRAPLAALGALATLRASVTTGFGPVEVV
                     VTEYSDAIDPLIELDAALTRQLDDVAITNDAAAVHDLLAGREQVARQHAIVLAALYFN
                     RLGPGQIEDLRTAAVRLATEQDAVRAALAPAERTAALAGVGPEAEQSRQRVLQLVLNR
                     GVAGFPLNTSPEDWDRRNAVVVENIAAVEKNLRQRIEQTAQGLLDHVRTAAGLNSVIL
                     FFALGLGVLVGILVTRALLRPLGVLKRTALDVADRRLPEAMARIREGEAPETAIEPVP
                     VGTREEIGQVARAFDEVHSQAVRLAGEQAQLRANVNDIFVNLSRRTQGLVERQLKLID
                     RLESGEQDPKQLDNLFQLDHLATRMRRNSENLLVLAGTDAANRSGRPVRLIDVLRAAV
                     SEVEQYQRLVLQQPPAVLVLGRSASDLVHLLAELLDNATQFSPPDSHVMVSSELGRDG
                     GIAIEVADRGVGMTDAELADANQRLASPAAVDASVSRRMGLFVVGRLAGRHGIAVQLR
                     RGDAGVGIWATVVMPSGLVRVAVEPDESPGAVAAEAAATNGPVPGGGAGLMASRNGVP
                     APRQQAAPAAVADDGPDNDSDETELKAKTSGGEVHDGQADGQEIDAEQADLEKADVEK
                     SDVKQSDVEQTDVDGGPSEGQPIATGTPGRSGLPQRNGNRTTPTVLPPAPPGPPTSPP
                     LESPEQIPGKGSSADLFRPARPSVAEPAGPGHRVTLQHSTPIFDDVASAWFKEHEGVP
                     VRWTAPAGRAPAGVTREAPARQAPSPNAPLPDAPSAEGVRAGATAADATRDSVAASAT
                     VGSAVPATVGSPL"
     gene            3364..>3545
                     /locus_tag="VF788_02050"
     CDS             3364..>3545
                     /locus_tag="VF788_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-associated domain-containing protein"
                     /protein_id="HEX8932983.1"
                     /translation="MSSTSEAGPLIVQSDKTLLLEMDNPAAAAARAAIAPFAELERAP
                     EHVHTYRVTPLALWNAR"
BASE COUNT          567 a         1264 c         1160 g          554 t
ORIGIN      
        1 agtggcgagc ccactgtggc cggtaccgct gatcccaccg tggccgatgc cgccaccgaa
       61 tcccgggtgg catctgctgc agtggcgcca gcccgcacac cctctgctga cggcgcatcc
      121 ggcaacggcg cgttcggcga gggagcctgg cgcgctggtg cctcccgagt caccccagcc
      181 ggggcgcgcc cggctggggc ggtccagcgc accggcacac cttcgtgctc tttgaaccac
      241 gccgacgcca cgtcgtcgaa gataggtgtc gagtgttgca gcgtcacccg gtgtcctggc
      301 cccgctggtt cggccacgct gggtcgagcc gggcggaaca gatcagcgct cgaccccttg
      361 ccaggaatct gctccgggct ctcgagggga gggctggtag gcggtccggg aggagctggc
      421 ggcagcacgg tcggagtcgt ccggttgcca ttgcgttgcg gtaacccgga gcggccaggg
      481 gtaccggtcg cgatcggctg accttcggag ggcccaccat cgacgtcggt ctgctcgaca
      541 tcggactgct tgacgtcact cttttcgacg tcagcctttt cgaggtcagc ctgctccgcg
      601 tcgatctcct ggccgtcggc ttggccgtcg tggacctcgc caccgctggt cttcgctttg
      661 agctcagtct cgtcactgtc gttgtccggc ccatcgtcag caacggcggc cggtgcggcc
      721 tgctggcggg gggctgggac gccgttgcgg ctcgccatca atcccgcgcc gccgccgggg
      781 actggtccat tggttgcggc cgcttcggcg gctactgccc ccggagactc gtccggctcc
      841 actgccaccc gcaccagccc cgagggcatc accacggtcg cccagatacc cacacctgca
      901 tcaccccggc gtagctgcac cgcgatgcca tgccggccag caagccggcc gacgacgaac
      961 agccccatcc ggcgggacac cgacgcgtcc accgccgctg ggctggctag ccgctggttg
     1021 gcgtcggcga gctcggcatc ggtcatcccg acaccacgat cagccacctc gatcgcgatc
     1081 ccgccgtccc ggccaagctc gctggagacc atcacatggc tgtccggcgg tgagaactgg
     1141 gttgcgttgt ccagcaactc tgccagcagg tggaccaggt cactcgccga gcggccaagc
     1201 accagtactg caggcggctg ctgcagcacc agccgttggt actgctccac ctcggacacc
     1261 gcggcacgaa gcacgtcgat caaccgtact ggacgcccgg accggttggc cgcgtcggta
     1321 cctgcgagga ccagcaggtt ctcgctgtta cgccgcatcc tggtggcgag atgatcaagt
     1381 tggaacaggt tgtccagttg cttcggatcc tgttcaccgc tttccagccg gtcgatcagc
     1441 ttgagctggc gctcgaccag accctgggta cgccgggaga ggttgacgaa gatgtcgttg
     1501 acgttggccc gtagctgggc ctgctcaccg gccagccgga ccgcctggct gtgtacttcg
     1561 tcgaacgctc gagcgacctg accgatctcc tcgcgagtac ccaccggcac cggctcgatc
     1621 gctgtctcgg gtgcctcgcc ctcgcggatc cgggccatcg cctccggcag ccgtcgatca
     1681 gcgacatcca gcgcggtgcg cttgagcact cccagcggcc gcagcagcgc ccgagtcacc
     1741 aagatgccga ccagcactcc caggcccaag gcgaagaaca ggatgaccga gttcaggccg
     1801 gccgcggtgc ggacgtgatc aagcaggccc tgagcggtct gctcgatccg ctgtcgcagg
     1861 ttcttctcga cggctgcgat gttctcgacg accaccgcgt tgcgccgatc ccaatcctca
     1921 ggcgaggtgt tcagcggaaa ccccgcaacg ccgcggttga gcaccagttg caacacccgc
     1981 tgccgggact gctcggcctc tggaccgacc ccggcgaggg ccgcggtgcg ctccgcgggg
     2041 gccaatgctg cccggaccgc atcctgttcg gtggccaacc ggacggccgc ggtgcgcagg
     2101 tcttcgatct ggccgggacc gaggcgattg aagtacagcg ctgccaagac aatcgcgtgt
     2161 tgccgggcga cctgctcgcg accggccagc aggtcgtgca cagcggcggc gtcgttggtg
     2221 atggcgacgt cgtcgagctg gcgggtcagc gcggcgtcca gctcgatcag cggatcgatc
     2281 gcgtcgctgt attcggtgac caccacctcg accgggccga agccagtggt cacgcttgcg
     2341 cgcagggtcg ccagcgcacc gagcgcggcg agcggggcgc ggctgaagcc cagcccgttt
     2401 acctgaccag ccgcgaccgc gaccacccgc gcaccgtcat cgaccgcgcg gaattgtgcg
     2461 tccaggcctc gccggtcacc catgcgaccg gtagcgacaa acgtggtagc caggtctcgt
     2521 tcccgcccca tggcgccgat caggtcagac agttgctgct gcacgcgcac aatttcagtg
     2581 atccgaacgt agccgggcgc ggcacccgct tgatccacaa tccgcagaac gccggccacg
     2641 agggccacga tggtcggcac cagcagaacc gcggccagct tgaccaccac aggccaattc
     2701 cgccagtacc accgggaccg ggtggtttcg ggggggctcc ccgcggggga gtccacgttc
     2761 gagctcagca gggcggtcat cacaccgcct ccgcgacacg ccaagcatcc acggtcatga
     2821 ccagcctccg cagcggacgg gagtcgcgaa actacgcgct ggcactttgg ggtccctccc
     2881 caggggtcga cggcagccgg gcatccggcc cgccataggt caccgcggtc gtgggcactc
     2941 cgcaccgcac ggacgaacac ctctggcgcc gggccggatg cacccgatgt agtgcacgga
     3001 cgatacggcg gcctagcccg ggccatcccg cgggtctcgt taccgtgctc gctggccgct
     3061 gatggcgcca gtgcagggga aggacaacac ccgcccggcg cagacaccgt tacccccatg
     3121 gaggccgagc aaatacgtaa ggtaattagt ttgcacctgg aagtcggaca ggccgcacca
     3181 cgggagcgct gtaccgcgcc gtaccgtgtc ggatgtcccg ctggaagccc gagccggaag
     3241 ccatccacca gccgcaccca caaccgtgct cgttggcacc tgggacacta accgggcacc
     3301 gagccgatag ccggccgcgg tgcgggctgt atgcggtgct ggccgagtgc ggaggaattt
     3361 taagtgagtt caacgtctga ggccggaccg ctcatcgtcc agtccgacaa aaccctgctg
     3421 ctggagatgg acaatccagc agcagcggcg gcgcgcgccg cgatcgcacc tttcgctgag
     3481 ctcgagcgcg cccccgaaca cgtacacacc taccgggtca ctcccctggc gctgtggaac
     3541 gcgcg
//
LOCUS       DASVXZ010000108         5953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1177703, whole genome shotgun sequence.
ACCESSION   DASVXZ010000108 DASVXZ010000000
VERSION     DASVXZ010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5953
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177703"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..797
                     /locus_tag="VF788_02055"
     CDS             <1..797
                     /locus_tag="VF788_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEX8932984.1"
                     /translation="GSPRQWLENYVEQLFTHRKLFEQTAESPGGLRAPVVIEWRQPHC
                     WLGLPRLGPRRFGTTVLSFYDAAGEDLTSQDRVHTQAYLGVADGLILLLDPWQLPGAM
                     DRIDVPAAAVREAEPPLEVLNRITELLRVTHGVKASRRVKVPLAVVFAKMDAFFPVLG
                     GNHPLLVKPAALLRHDQVAGYDETAGQDTHEHVRSMLHEYGADDIDAHLMHNYAIFRY
                     FAVSALGATPDYTAKAVDPGGVQPFRVEEPLLWLLKGFGVIDRSRT"
     gene            794..3052
                     /locus_tag="VF788_02060"
     CDS             794..3052
                     /locus_tag="VF788_02060"
                     /inference="COORDINATES: protein motif:HMM:NF040416.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932985.1"
                     /translation="MSGGFGSLYYTDCRPGQGLQGGAGFQFQAASPGVAPEAMPLVQR
                     TALYEPPVPWMRDRRPVADYPPSLAHTAEGDLFATAAGCYLGQEANGAREGNQFTHAV
                     VTRDPADYGSVRPAQLWGAPWWATGPDPATVLDELAAHPEPGPLDVETVCERVRAAAG
                     GEARLTALLSAIHHLTDREHRRTVVLVSANPEAAACWIAAATLLLPAPDALRISFKIF
                     VADGQYGCHDIIALHPEWAGQWANTGSGSGLAVFDLDRGDHTAVEATAAAGFWVPRLL
                     AEDPYDVVDAVELAGQFARARADDAGVPTGADRLAAVIVAAGERLPRLGCVEEAAGWL
                     LTAPEDAMRIARDPVLAAVLDARGRAPVLRALAAAAGGRGWASAALQIRRALRSAEIS
                     EALTASDGVAVLRMFTALEPLPPLEGPGQDWPDEDRECGRVEIEEALRGARPDQIPAL
                     LTVARRHTVAPVTVMFRSAAYQFAEWWVNQRDPALAPERWQAPPEALDWVRDVLRDWL
                     AGPHYPYAVEALRTGWWRSLWPEACDPGDELDKQLMSLAYQHLEGEKRDQLVREVQEW
                     SFARMVGDPHPSTVSWDILFGERMPGMAEAVTFVAALVNSGQPPSTEVGSKLCAVLER
                     APPDVALGFLRNCSELLANLIYEALRGRWPRHPGTATADECRTVAFTFVLATRSPPSG
                     PTDQQHLLLERLAELVAAMPKDVRAAVDHGYPGGLGRPWRDWVSGVEPHRLRLRRRSS
                     TGPGRQSGRGGE"
     gene            3056..4654
                     /locus_tag="VF788_02065"
     CDS             3056..4654
                     /locus_tag="VF788_02065"
                     /inference="COORDINATES: protein motif:HMM:NF040097.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932986.1"
                     /translation="MPAFIAAVIALGLYGVVCYYAFVYVIGPAYPFVILGAGGLGVLL
                     VAVVLTGVLLGFGGAEASTITAPHLRKRLPDPKSNFERDSAWPGYLFGQSRIDLGAAL
                     RRTVRAVAWMWVLTTESLVAAPVVFFFWPLLLLPLIGALALTAGVTVGVVAVYGLLGA
                     VLAVAWLGWLAAVGVLRGVDIGIRLLRRAKATCHHSGCNFRNRLPAYRCVCGQTHHDI
                     RAGRLGAFARRCECGALLPTTVLQAAAGLLAVCQRCNRELRAGAAVLTDVVIPVFGPA
                     SAGKTRLVRAGMVALEAHLSATGGSLHPIGSESEETFRDAIAVVESGMQTTKTDAARP
                     PAAITVALTAARRKALLHLFDAAGEFFGNREQGSELPFLDDAQGLTFVLDPFSIPAVA
                     DDLTGTLPSWLEAAQPAEMHPEQSYPITTQLLRDQGVDLASKPLAVAVVKADLLLGLP
                     PAAGLRAGAQSAEVEGWLREKGLDNLVEGAGRDFGVVRYFLVSSLTAATDAKGTTLPT
                     SPAQPLLWLLRRAGVPIPAQRVAS"
     gene            4651..4788
                     /locus_tag="VF788_02070"
     CDS             4651..4788
                     /locus_tag="VF788_02070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932987.1"
                     /translation="MSAPLPPHYRSFRIVLVIVLVGALTGAVWWIAQPGVVDEILRLL
                     R"
     gene            4811..5155
                     /locus_tag="VF788_02075"
     CDS             4811..5155
                     /locus_tag="VF788_02075"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932988.1"
                     /translation="MLINPLLVTVRHRVTTYRLSGADTINALGGDDMVNGFGGDDTIN
                     GGPGNDSIQGGDGDDTITGGAGNDRIQGGNGNDTIVVRGDGVDLVACGDGFDMVQAGP
                     EDLLNPDCEKRI"
     gene            5355..>5953
                     /locus_tag="VF788_02080"
     CDS             5355..>5953
                     /locus_tag="VF788_02080"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEX8932989.1"
                     /translation="MSRAPVWQSSDADLLAELDALETQLHSTWARMLSIVAEIDSRAM
                     APGLGYGNTVELMRAIARIPRGEARAQLNAAADVLPSRGTGGAPVEPKLPTTAAAVAE
                     HAIGAADVAVIRSVLARIPPHLGEGKRAEVEAELARHARTLDAGQLTILGKRILAYLD
                     QDGRCPHDAPETRRSLHFHDRDGGYELSGWLDREAAEILR"
BASE COUNT          889 a         1993 c         2090 g          981 t
ORIGIN      
        1 ccgggtcgcc ccggcaatgg ttggagaact acgtcgagca gctcttcacg caccggaagc
       61 tgttcgaaca gacagccgag tcaccgggcg ggctgcgcgc gccggtcgtc atcgagtggc
      121 ggcagcccca ctgctggctc gggctaccca gactgggacc gcgcagattc ggtacgacgg
      181 tgctctcctt ctacgacgct gccggcgagg acctcaccag ccaggaccgc gtccacaccc
      241 aggcctacct cggtgtggcg gacgggctga tcctgctact cgacccgtgg cagctgcccg
      301 gggcgatgga ccgtatcgac gtgcctgctg ccgccgtccg ggaggccgaa cccccgcttg
      361 aggtgctcaa ccggatcacc gagctgctgc gggtgacgca cggggtgaag gcgagtcggc
      421 gggtaaaggt gccactcgcc gtcgtgttcg cgaaaatgga cgctttcttt ccggtgctcg
      481 gcggcaacca cccgctactg gtcaagcctg cggcgctgtt acgtcacgac caggtggcag
      541 gctacgacga gactgccggc caggacaccc acgagcacgt gcggagcatg ttgcacgagt
      601 acggcgcgga cgatatcgac gcgcacctca tgcacaacta cgcgatcttc cgctacttcg
      661 cggtgtcggc cttgggcgcg acccccgact acacggccaa ggcggtcgac ccggggggtg
      721 tgcagccctt ccgggtcgag gagccgctgc tgtggctgct caagggcttc ggtgtgatcg
      781 accggagccg gacgtgagcg gcgggttcgg ctcgctgtac tacaccgact gccggcccgg
      841 acaaggcctg cagggcggtg cgggcttcca gttccaagcg gcctcgcccg gggtggcccc
      901 cgaggctatg ccgctggtgc agcgcacggc gctctacgag ccaccggtgc cgtggatgcg
      961 ggatcgccgg ccggtcgccg actacccgcc gtcgctggca cataccgccg agggagacct
     1021 gttcgccacc gccgcagggt gttacctcgg tcaggaagcg aacggcgcgc gggagggcaa
     1081 ccagttcacg catgccgtcg tcacccgcga tccggcggat tacgggtcag tgcggcccgc
     1141 gcagctgtgg ggcgcaccat ggtgggccac cggacccgat ccggccaccg tgctcgacga
     1201 gctggctgcg cacccggaac cgggaccgct cgacgtggag accgtgtgcg agcgggtgcg
     1261 tgcggccgca ggcggcgaag ctcggctcac cgcgctgctc tcggcgatcc atcacctcac
     1321 cgaccgcgag caccggcgca ccgtggtgct cgtcagcgcc aaccccgagg cggccgcctg
     1381 ctggatcgcg gcggcgaccc tgttgctgcc cgcaccggat gcgctgcgga tcagcttcaa
     1441 gatctttgtc gcagacggcc agtacggctg ccacgacatc atcgcgctgc atccagagtg
     1501 ggccggccag tgggcgaaca ccggatccgg cagcgggctg gccgtcttcg accttgaccg
     1561 tggcgaccac accgctgtgg aggccaccgc cgccgcgggc ttctgggtcc cccgcttgct
     1621 ggctgaggat ccctacgacg tcgtggacgc cgttgagctc gcgggccagt tcgccagggc
     1681 acgcgcggat gatgccggcg tgccgaccgg cgccgatcgg ctcgccgcgg tcatcgttgc
     1741 cgccggcgag cggttgccga ggctcggctg cgttgaagag gcggccggct ggctgttgac
     1801 cgcgcccgag gacgcgatgc ggatcgcccg cgacccggtg ctggcggcgg tgctggacgc
     1861 ccgtgggcga gccccggtgt tgcgcgcgct ggccgccgct gccggagggc gcgggtgggc
     1921 gagcgccgcc ctgcagatcc ggcgggcact gcgcagcgcc gagatcagtg aggcactgac
     1981 cgcctccgat ggggtcgctg tgctgcgcat gttcactgcg ctcgagcccc tgccgccgct
     2041 ggagggaccc gggcaagact ggccggacga agaccgggag tgtggccggg tcgagatcga
     2101 ggaggccctg cgcggcgcgc ggccggacca gattcccgcg ttgctcacgg tggctcgccg
     2161 gcacaccgtg gcgcccgtca ccgtgatgtt ccgcagcgct gcgtaccagt tcgctgaatg
     2221 gtgggtgaac caacgtgatc ccgcccttgc gcccgagagg tggcaggccc cgcccgaggc
     2281 gctcgactgg gtgcgtgacg tgctgcggga ctggttggca ggtccgcact acccctacgc
     2341 cgtggaggcc ctccggacgg gctggtggcg ctcgctgtgg ccagaggcct gtgacccggg
     2401 cgacgaactc gacaaacagt tgatgtcctt ggcctaccag cacctggagg gcgaaaagcg
     2461 ggatcagctg gtccgggagg tccaggagtg gtcattcgcc cggatggtgg gcgacccgca
     2521 tcccagcacg gtctcctggg acatcctgtt cggcgagcgg atgccaggga tggccgaggc
     2581 ggtgaccttc gtcgcggccc tggtgaacag cggccagccg ccctccaccg aggtcgggtc
     2641 gaaactgtgt gcggtgctcg agagggcgcc tcccgatgtc gcgctcggtt ttctccggaa
     2701 ctgctcggaa ctcctcgcga acctgatcta tgaggcgctg agaggcaggt ggccgcgcca
     2761 ccccggcacc gcaacagctg atgagtgccg gactgtcgca ttcaccttcg tccttgccac
     2821 ccgtagcccg cccagtggcc cgactgatca gcagcacctc ctgctggagc gccttgcaga
     2881 actcgtcgcc gcgatgccca aggacgtccg ggcggcggtc gatcatggtt acccgggcgg
     2941 cctcggccgg ccgtggcggg actgggtgtc cggggtcgaa ccccaccgcc tgcgcctgcg
     3001 ccgccggtcc agcacaggac cgggccggca gtccgggcgc ggaggcgagt gagcaatgcc
     3061 cgcattcatc gccgcggtga tcgcactcgg cctctacggg gtggtctgct actacgcgtt
     3121 cgtctacgtg atcggccccg cctacccctt cgtaatcctc ggtgcgggtg ggcttggcgt
     3181 gctgctggtg gccgtggtgc tgaccggagt gttactgggg ttcgggggtg cggaagcttc
     3241 tacgatcacc gccccccacc tgcgcaaacg gctgccggac cccaagtcga acttcgagcg
     3301 cgacagcgcg tggccgggct acctcttcgg gcagagccgg atcgacctcg gtgcggctct
     3361 gcggcgcacc gtacgcgcgg tggcgtggat gtgggtgttg acgaccgagt ccctggtcgc
     3421 ggcaccggtt gtgttcttct tctggccgct gctgctgttg ccactcatag gggcgctcgc
     3481 gctgaccgcg ggggtgaccg tgggtgtcgt tgcggtgtac ggcctgctcg gggcggtgct
     3541 ggcggttgct tggctcggct ggctggccgc cgtaggtgta ctgcgcggcg tggacatcgg
     3601 tattcgcctg ctccgccgcg ccaaagccac ctgtcaccac tccggctgca acttccgcaa
     3661 ccggctgccg gcgtaccgct gcgtgtgcgg gcagactcac catgacatcc gcgccggccg
     3721 gctcggcgcg ttcgcccgcc ggtgcgagtg cggcgcgctg ctaccgacca ccgttctgca
     3781 ggccgcagcc gggctgctgg cggtgtgcca gaggtgcaac cgtgaactgc gcgccggggc
     3841 ggcggtactg accgatgtgg tgatcccggt tttcggaccc gcctcggcgg gcaagacccg
     3901 gctggtgcgc gccggcatgg tcgcgctcga ggcgcacctg agcgccaccg gcggatcgct
     3961 gcacccgatc ggatcggaga gcgaggagac cttccgggac gccatcgcgg tggtggagtc
     4021 cgggatgcaa accacgaaga ccgacgccgc ccggccaccg gccgcgatca ccgttgcgct
     4081 cacggcggca cgacgcaagg cgctgctgca tctgttcgac gcggcaggcg agttcttcgg
     4141 taaccgtgag cagggcagcg agctgccctt cctcgatgat gcccagggtc taacgttcgt
     4201 tctcgacccg ttctcgatac ctgccgtagc agacgatctc accggcacgc tgccctcctg
     4261 gctggaggcg gcacaaccgg ccgagatgca cccggaacag tcctacccga tcaccaccca
     4321 actgctccgg gaccagggcg tcgatctggc gagcaagccg ctcgccgtcg ctgtggtcaa
     4381 ggccgatttg ctactcggcc ttccccccgc cgcgggactg cgagccggag cccaatcggc
     4441 ggaggtggag ggttggctgc gcgagaaagg cctggacaat ctggtcgagg gagccgggcg
     4501 tgacttcggt gtggtccgtt atttcctggt gtcgtcgctg accgcggcga ccgacgcgaa
     4561 aggcacgacg ctgcccacct cgcccgcgca gccactgctg tggctactgc gtcgcgccgg
     4621 ggtaccaatc cccgcgcaga gggtcgcatc gtgagtgctc ccctgccccc gcactaccga
     4681 tcgttccgga tcgtgctcgt catagtcctg gtgggagccc tcaccggcgc ggtgtggtgg
     4741 attgcgcagc cgggggtagt ggacgaaatc ctccgcctac tccggtgata gtgtgaaacc
     4801 agcacagcat gtgttgatta atccgctttt ggtcacggtt cgtcaccgcg tcaccacata
     4861 cagattatcc ggcgctgaca ccatcaatgc gcttggcgga gacgacatgg tgaacggctt
     4921 cggtggcgat gacactatca acgggggccc tggcaacgac agcatccagg gaggtgacgg
     4981 tgacgacacg atcaccggag gtgccggcaa cgatcgcatt cagggtggta atggcaatga
     5041 caccatcgtg gtcaggggcg acggcgtcga cctcgttgcg tgcggtgacg gattcgatat
     5101 ggtgcaggcc ggtccggaag acctactcaa ccccgactgt gagaaacgga tatagggcgc
     5161 ccacgcccgt cttctggcgc ctttggtgat gtcgctatcg gtgaggtccg aggaaaggac
     5221 cgttgccgcg cgaggacgta ccgcagccgg caaccagcgt cctgatcttg agacggattt
     5281 ctccgtcccc aatttcctgg ctgagtcagg gcgaagcgcc ctggattgtc ggtgcgctgt
     5341 tctagaacag ggtcatgtcg agagcacctg tgtggcagag cagcgatgct gatttgctcg
     5401 ccgagctcga cgcgttggaa acccagttgc attccacctg ggcgcggatg ctctcaatcg
     5461 ttgccgaaat cgattcccgg gctatggcgc ccggattggg gtatggcaac acggtggaat
     5521 taatgcgggc gatcgcgcgg atacctcgcg gtgaagcccg agcccagtta aatgccgccg
     5581 ccgacgtgct gcccagccgc ggaacaggcg gcgcgccggt ggaaccgaag ctcccgacca
     5641 cggctgccgc ggtggctgaa cacgcgatcg gcgccgcgga cgtcgcggtg atccgctcgg
     5701 ttctcgcgcg tatccctcca cacctgggag agggcaagcg ggccgaagtc gaagccgagt
     5761 tagcccgcca cgcccgcacc ctggacgccg gccagttgac gatcctgggg aaaaggatcc
     5821 tggcctatct cgatcaggat ggtcggtgcc cccacgatgc cccagagacc cgccggtcgt
     5881 tgcacttcca cgaccgcgac ggaggctatg agctgtccgg atggctggac cgggaggccg
     5941 ccgagatcct ccg
//
LOCUS       DASVXZ010000109         2728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1177704, whole genome shotgun sequence.
ACCESSION   DASVXZ010000109 DASVXZ010000000
VERSION     DASVXZ010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177704"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VF788_02085"
     CDS             complement(<1..207)
                     /locus_tag="VF788_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8932990.1"
                     /translation="MSRRVVGVTLDNLDLLPKKCRRCVFWELAPHVREQAEDFGQTEL
                     EKESWVSSVLLEWGSCGRIIYVDNV"
     gene            346..1659
                     /locus_tag="VF788_02090"
     CDS             346..1659
                     /locus_tag="VF788_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005442534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEX8932991.1"
                     /translation="MNQPSHRPPTQRDLDPHLRRYAQRTVGMTASEIRALFAVASRPE
                     VVSLAGGMPYLPALPLDSLADELAQMLTTDGMAALQYGSAQGTPELREQICEVMALEG
                     IRAHADDVTVTVGSQMALDMVTRIFCDPGDVVLAEAPSYVGALTTFASYQTQVVQVVM
                     DDDGLVPAELDTALRSLRAQGRSPKFLYTIPNFHNPAGVTLAVERRAEILALCAEHRV
                     LVVEDNPYGLLGFDGQIYPAMRAADPDNVVYLGSFSKTFAPGLRVGWALAPHAVREKL
                     VLAVESATLCPPVFTQYVVSRYLAQHDWKGQVKTYREVYRVRRDAMLAALVQYLPFGC
                     TWTHPAGGFYVWLTVPEGLDTKAMLPRAVTQRVAYVPGTAFYADGLGSRQMRLSFCYP
                     TPERITEGVRRLAAVLEGELELQRTFGSVRPRAVFGPQSPSPDTA"
     gene            1703..2650
                     /locus_tag="VF788_02095"
     CDS             1703..2650
                     /locus_tag="VF788_02095"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEX8932992.1"
                     /translation="MTDRTVAVLAGGLSHERDVSLRSGRRVSSALRDTGLHVEEWDAD
                     ATLISRLTSNRPDAVVVALHGGTGENGAVQSVLEMLRVPYVGADPRACRRAWDKPTAK
                     DELARAGLSTPDWIALPHATFRDLGPQDVLDALVDRLGLPLILKPPQGGSALGVHVVR
                     DVAELPAAVLGCLAYGDTVLAERFVDGIEVAVAVVDTREGPRTLPAVEIEATSGFYDY
                     EARYTAGLATFHAPARLDAAATTAVAELALSAHRVLGLRDVSRTDAVVTPEGEAQFLE
                     VNVAPGLTETSLLPMAIASTGADLGTVYAALIDRAISRA"
BASE COUNT          414 a          945 c          910 g          459 t
ORIGIN      
        1 cacgttgtcc acgtagatga tccgaccgca ggagccccac tccagcagca cgctggaaac
       61 ccaggactcc ttctccagct cggtctgccc gaagtcttca gcctgttccc ggacatgcgg
      121 cgcgagctcc cagaacacgc aacgccggca cttcttgggc agcagatcga ggttatccag
      181 ggtgacaccg accactcgac gtgacacggg ccctccctga taatccacgg gcgcaacagc
      241 gcctggcgca gcatatgccg atggccatcc ggagtgaaga cggcagaggg ttctccggtg
      301 cgcctttaca ctgccagggg accttcaccg gagcagaggc gcccaatgaa ccagccaagc
      361 caccgaccac ccacccaacg cgatctcgat ccacacctgc gccgctacgc gcagcgcacc
      421 gtagggatga ccgcatcaga gatccgcgcg ctgttcgccg tcgccagccg tcctgaggtc
      481 gtctcgctgg ccggcggcat gccctacctg cccgcgttgc cgctggactc gctggccgac
      541 gaactggccc agatgctcac caccgacggg atggcggcgc ttcagtacgg ctcggcgcag
      601 ggcaccccgg agcttcgcga acagatctgc gaagtcatgg cgttggaggg catccgggcg
      661 cacgccgacg acgtcacggt gaccgtcggc tcgcagatgg ccctggacat ggtcacccgg
      721 atcttctgcg atccgggtga cgtggtgctc gcggaggccc cgtcctatgt cggcgcgttg
      781 accaccttcg cgtcctacca gacgcaggtc gtgcaggtgg tgatggacga cgacgggctg
      841 gtgcccgcgg agctggacac cgcgctgcgt tccttgcgcg cccagggccg gagtcccaag
      901 ttcctgtaca ccatcccgaa tttccacaat cccgctggcg tcacgctggc tgtggagcgc
      961 cgcgccgaga tcctggcact gtgtgctgag catcgggtgc tggtcgtgga ggacaacccc
     1021 tacgggctgc tgggctttga tggccagatc tacccggcga tgcgggccgc agacccggac
     1081 aacgtggtct acctgggctc attctccaag accttcgcgc ctggtctccg cgtcggctgg
     1141 gcactcgcac cgcacgcagt gcgggagaaa ctcgtgttgg ccgtggaatc ggcgaccctg
     1201 tgcccgccgg tgttcactca gtacgtggtg tcgcgctacc tggcccagca tgactggaaa
     1261 ggtcaggtca agacctaccg ggaggtgtac cgcgtgcgtc gcgacgccat gctcgccgca
     1321 ctcgtccagt acttgccgtt cggatgcacc tggacgcatc cggcgggcgg tttctacgtc
     1381 tggctcaccg tcccggaggg gcttgacacc aaagcgatgc tgcctcgggc ggtgactcag
     1441 cgggttgcct acgttccggg cacggcgttc tacgctgacg ggctcggcag ccgacagatg
     1501 cggttgtcgt tctgttaccc gacaccggag cggatcaccg agggggtgcg caggctggcc
     1561 gccgtgttgg agggcgagct cgaactgcag cggacgttcg gtagcgtgcg cccgcgtgcg
     1621 gtgttcggcc cgcaatcgcc gtccccggac acggcctgag cctcagcgcc ggctccgccg
     1681 gcgggaaatc atggaggggc tggtgaccga tcgtactgtg gctgtgctgg ccggtgggct
     1741 ctcgcatgag cgagacgtgt cgctgcgctc gggccgccgg gtgtccagcg cgctgcgcga
     1801 caccggcctg cacgtcgagg agtgggacgc cgacgccacc ctgatcagcc ggctcaccag
     1861 caaccggccg gacgccgtcg ttgtcgcact gcacggtggt acgggggaga acggcgcggt
     1921 gcagtcggtg ctggagatgt tgcgggtgcc ctatgtcggt gccgatccac gggcttgccg
     1981 ccgtgcgtgg gacaagccca ccgccaagga tgaactggcc cgcgcggggt tgagcacacc
     2041 ggactggatc gcgctgccgc atgccacctt ccgtgatctc gggccgcagg atgtgctcga
     2101 cgcgctggta gaccggctcg gcctgccgtt gatcctcaaa cctccccagg gtggctcggc
     2161 gctgggcgtg cacgtagttc gcgatgtggc cgagctaccg gccgccgtcc tggggtgcct
     2221 ggcctacggg gacaccgtgc tggccgaacg gttcgtcgac ggtatcgagg tcgcggttgc
     2281 ggtggtggac acccgggagg ggccgcggac gctaccggcg gtggagatcg aggccacctc
     2341 cggcttctac gactacgagg ctcgctacac cgctggcctg gcgaccttcc acgcccccgc
     2401 ccggctcgac gccgcggcga ccaccgcagt cgccgagctc gcgctgagcg cacaccgggt
     2461 cctcggcctg cgcgacgtgt cccgcaccga cgcggtggtc accccggagg gcgaggcgca
     2521 gttcctcgaa gtcaacgtcg ctcccggcct caccgagacg tccctactgc ccatggcgat
     2581 cgcatccacc ggcgccgatt tgggcactgt gtacgccgcc ctcatcgacc gagccatctc
     2641 ccgcgcctga cacccccctc gtttcccgac atggagacat atcggggttt tcgaccccgt
     2701 tctgagcccg atatgtctcc atgtcggg
//
LOCUS       DASVXZ010000110         6305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_543929, whole genome shotgun sequence.
ACCESSION   DASVXZ010000110 DASVXZ010000000
VERSION     DASVXZ010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6305
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_543929"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VF788_02100"
     CDS             complement(<1..609)
                     /locus_tag="VF788_02100"
                     /inference="COORDINATES: protein motif:HMM:NF012783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEX8932993.1"
                     /translation="MSSSTRPMGIWPAPPPHEPRRTPWQPDPRPPAPPTTPSQSAIID
                     TGPDWLAERLLDRRVVTLSGKLDSAAANRAAASLALLDASGDDPIELRLCDVDADLDV
                     AFTVLDALDLVGVPLHVTCLGELRGAAVAILAVADHRAAGPHATVHLREPRTYLGGPA
                     DNVATHAEDYRRRLRQLQERIAGACHRTVDAVALDMAAGRILT"
     gene            complement(606..869)
                     /locus_tag="VF788_02105"
     CDS             complement(606..869)
                     /locus_tag="VF788_02105"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8932994.1"
                     /translation="MTQRRTSFPGLQEMLDRRRALMTELLAARKERGMSQTEIAAQMG
                     TSQSAVARLERGDVDARLSTVDRYAAALGHTVDWQVRSPKEPR"
     gene            complement(938..1705)
                     /locus_tag="VF788_02110"
     CDS             complement(938..1705)
                     /locus_tag="VF788_02110"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HEX8932995.1"
                     /translation="MTSGSGAAVLTGRTALVTGAASGIGAALTRRLVADGAAVLAVDR
                     DEAGLKTLTGEIPGAQPVVCDLSDLDAVDALPAGVDVLVNNAGLQHVAALPEFDPDRF
                     SLILRVMLEAPFRLVRRILPHMYGRGWGRVINISSVHGLRASPFKAAYVSAKHGLEGL
                     SKVIALEGASHGVTSNCINPAYVRTALVERQIADQARSHGIDENTVIEQIMLTPVAVK
                     RLIEPDEVADLAAVLYGPASASITGSSLSVDGGWTAR"
     gene            2152..3846
                     /locus_tag="VF788_02115"
     CDS             2152..3846
                     /locus_tag="VF788_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX8932996.1"
                     /translation="MNTSNGLAAQPGGSGSTRKADPAAWGLPLIVLIIGMFMSVLDTS
                     IVNVAIPTIQTEFGGTTDDAQWVVTGYTLTLGVVVPITAWLGDRVGLKRLYNLALLAF
                     GAGSALCGLAGDLNSLVIFRIIQAIPGGILPVITLSILLRIVPREKLGAAMGLYGLGI
                     VFAPGVGPVLGGYLVEYVNWRLIFYINVPIGILGAVAAALVLPRFPQVAGRRFDALGF
                     LTVGGGLFALLLATSEGEIWGWGSYRILGLITYGVLSLALFVVIELEVADPLLDIRIF
                     RYWAYTNSLLLIAVLMVVMYSILFYIPQFLQQAQGWGAFDAGLTLLPQALVMAVLMPI
                     AGRVYDRFGPRWPAVIGLTIVTAGTYLLHTITLETTREHVMWLMMMLGVGLGIAFMPI
                     LTGGVAVIPLTRSNAASALNNVVQRVSGALGLAMLTAILTTQQTQQMAGRAALLPTTT
                     PVPHLGDATVPDWLGAYALYQQTQLQVFVGAIDDLFLIATGLSALGALIALLLRSGPA
                     PVPPAGFGPPATAPVANGKITVEGHPIPTATTGNDSPAPQADRPLDVGIEAHPPQV"
     gene            complement(3861..4046)
                     /locus_tag="VF788_02120"
     CDS             complement(3861..4046)
                     /locus_tag="VF788_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8932997.1"
                     /translation="MTDEPYAFDKDRFYRLKNDAVIAANQSTFAGPHSDIHYPESCGL
                     SSQPHSADRYVPHVCWK"
     gene            complement(5155..5352)
                     /locus_tag="VF788_02125"
     CDS             complement(5155..5352)
                     /locus_tag="VF788_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010315471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8932998.1"
                     /translation="MSTTDLSSATWRKSSRSNGQASCVEVADLDGGHRAVRDSKNPSG
                     PALIVTSAQWTTFTTALHTGE"
     gene            complement(5349..6239)
                     /locus_tag="VF788_02130"
     CDS             complement(5349..6239)
                     /locus_tag="VF788_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019044439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8932999.1"
                     /translation="MTEAITTTGSTVPRRQLGRYLRDLRNKSRLTVRAAGAQLEWSEA
                     KIWRIETGQTSLRSLDVEAMCKVYGAPQDITEALMGLAKETKARGWWHSYGDAIPEYF
                     DVYIGLEEAASHFSWYESELVPGLFQTEDYARAVIRADNPGVADAEIERRVHVRLARQ
                     ALLTRITNPPVFDVVLNEAILHRPVGGEETARGQLKRLEEVSELPTVSLRVVPFGAGL
                     HHGIMSGTFELLRFPLNGNGQDTEPPTVYVESFTGALYLDKPHEVARYDTAFKNIWES
                     SLDERASQELITQVTRELGK"
BASE COUNT         1056 a         2024 c         2083 g         1142 t
ORIGIN      
        1 cgtcaggatg cgaccagccg ccatgtcgag ggccacggcg tcgaccgtgc gatggcatgc
       61 cccggcgatg cgctcctgta gctgccgcag ccggcgccgg tagtcctcgg cgtgggtggc
      121 cacattgtct gcggggccac cgagataggt gcgcggctcg cgcaggtgca cggtggcgtg
      181 tggccctgcc gcgcggtgat ctgcgacagc caggattgcc accgcagctc cgcgtagctc
      241 acccagacac gtcacgtgca gcggcacgcc cacgaggtcg agagcatcca aaacggtgaa
      301 ggcgacgtcg agatcggcgt cgacgtcaca caaccgcagc tcgatcgggt catcaccgga
      361 ggcgtccagc agagcaagcg atgctgccgc gcggttggcg gccgccgagt cgagcttgcc
      421 ggagagagtt accaccctcc gatcgagcaa gcgctcagcc agccagtccg ggccggtgtc
      481 gatgatggcg ctctgtgacg gcgtggtcgg cggcgccggg gggcgtgggt cgggctgcca
      541 cggggtgcgg cgcggctcgt ggggtggagg cgccggccag atgcccatcg gccgggtgct
      601 gctactcatc ggggctcctt gggtgatcgg acctgccagt cgacggtgtg accaagtgcc
      661 gccgcgtacc ggtccaccgt ggacaagcgg gcgtccacgt ctccccgctc caagcgcgcc
      721 acggccgact gggaggtgcc catctgggcg gcgatctcgg tctggctcat gccccgctcc
      781 ttgcgggcgg cgagcagctc cgtcatcagc gcccgccgcc gatccagcat ctcctgaaga
      841 cctgggaagg aggtgcgacg ctgcgtcata ccgataacga tatctcaaaa acgcgatatt
      901 tgttctcgaa gcgtcgcgca ccacctctcg ctgggtgtca acgcgcggtc cagccgccgt
      961 ccacggacag cgaggagccg gtgatcgagg ccgacgccgg tccgtagagc accgcggcga
     1021 ggtcggcgac ctcgtcgggt tcgatgagtc gcttcaccgc gaccggggtg agcatgatct
     1081 gctcgatgac ggtgttctcg tcgatgccgt gactgcgggc ctggtcggcg atctgcctct
     1141 cgaccagagc ggtacgtaca taggccgggt tgatgcagtt gctggtgaca ccatgcgagg
     1201 cgccctccag ggcgatgacc ttcgaaagtc cctcgaggcc gtgcttggcg ctgacgtagg
     1261 ccgccttgaa tgggctcgcc cgcagtccat gcacgctgga gatattgatc acccgtcccc
     1321 agccgcgacc gtacatgtgc ggaaggattc gccggaccaa ccggaatggc gcttcgagca
     1381 ttacccgcag gatcagcgag aagcggtcgg gatcgaactc gggcagcgcg gcgacgtgct
     1441 gaaggccggc gttattgacc agtacatcga ctcccgcagg cagtgcgtcc accgcgtcga
     1501 ggtcggacag gtcgcatacc accggctggg cgcctggtat ctcaccggtc agggttttga
     1561 gccctgcctc gtcacggtcc acggcgagca ccgccgcgcc gtctgccacc agccgccggg
     1621 tgagcgcggc tccgatccct gaggcggctc cggtcacgag cgcggtgcgg ccggtgagca
     1681 cggcggcacc cgaaccagag gtcatgacct ttgacgttac gcggagccga ccgtgaccgc
     1741 cttccgccgc ccattcactc agcggtactc gggagcgggt ccggcagatc aaggcgaaga
     1801 cgacggccaa gctgcgccaa cctgacccga ggaccagctc gcctccaaga gcttcggggt
     1861 ctcgctgcca gtgatagccc tagcgttaca ttacgcctag taacttatgc cactcatatg
     1921 ggttatgaag acgctatcaa gagggtggtt gtggggttgc aaggtcacgc aacagcactt
     1981 aagttagttg tgtgaagcaa acagtattat tttcgtgccg gatttcgggg cagtgaacac
     2041 gacactcata ccggtcgtgg ggcgctgcat acagcggcgg caggctcgga cctcggcggg
     2101 tacgccagtc cgtactgggg atccggtgac aaagaccgaa cggcaccgga ggtgaacacc
     2161 tccaacgggt tggcagctca gcctgggggt agtgggagca ccagaaaggc tgacccggcg
     2221 gcctggggct tgccgctgat agtgctgatc atcgggatgt tcatgtcggt gctggacacc
     2281 agcatcgtca atgtggccat ccccaccatc cagacggagt tcggggggac caccgacgac
     2341 gcgcagtggg tggtcacggg ctacacgctg accctgggcg tcgtagtgcc gatcaccgcg
     2401 tggctggggg atcgcgtcgg gttgaagagg ctttacaacc tggcgctgct cgcgttcggt
     2461 gccgggtcgg cgctatgcgg gctggccggg gacctgaaca gcctggtgat cttccgaatc
     2521 atccaggcga tcccgggtgg catcctcccg gtgatcacgc tgtccatctt gctccggatc
     2581 gtgccgcggg agaagctcgg tgcggcgatg ggcctgtacg ggctggggat cgtgttcgcc
     2641 ccgggggtcg gaccagtctt gggcgggtac ctggtcgagt acgtgaactg gcgactcatc
     2701 ttctacatca acgtgcccat tggaatcctg ggcgcggtgg ccgcggcact ggtgttgcca
     2761 cgattccccc aggtggccgg acggcggttc gatgcgctgg gtttcctcac cgtgggcggt
     2821 ggactcttcg cgctgctgct ggcgacttca gagggcgaaa tctggggctg gggctcctac
     2881 cggatcctgg gcctgatcac ttacggcgta ctgagcctgg cgttgttcgt ggtgatcgaa
     2941 ctcgaagtcg ccgacccgtt actggatata cgcatattcc gctactgggc gtacaccaac
     3001 tcactgctgc tgatcgcggt gctgatggtt gtgatgtact cgatactgtt ttacatcccg
     3061 cagttcctgc aacaggccca gggctggggt gcattcgacg ccggccttac cctgctgccc
     3121 caggcactgg tgatggcggt gttgatgccc atcgccgggc gggtctatga ccgcttcgga
     3181 ccccgctggc cggcagtcat cggactgaca atcgtaaccg cgggcaccta tttgctgcac
     3241 acgatcaccc tggagactac ccgggagcac gtcatgtggt tgatgatgat gctgggggtc
     3301 ggcctgggga tcgccttcat gccgatcttg accggggggg tcgcggtcat cccgctgacc
     3361 cgctcgaacg ccgccagcgc gctgaacaac gtcgtgcagc gcgtgtcggg ggcgcttggt
     3421 ttggccatgc tcaccgccat cctgactacc caacagaccc aacagatggc cggacgcgcc
     3481 gcgctgctgc ccaccaccac tcccgtccca cacctcggcg acgcgaccgt ccccgactgg
     3541 ttaggcgcgt acgccctcta ccagcagacc cagctacagg tcttcgtcgg ggcgatcgac
     3601 gacctgttcc tgatcgccac cggcctcagc gccctgggcg cgttgatcgc gctgctgctg
     3661 cgatctggac ccgcccccgt cccgccggcc ggattcggcc cgccggcaac cgcaccggtc
     3721 gccaacggca aaattaccgt cgaaggccac cccataccca ccgccactac cggcaacgac
     3781 agcccagccc cgcaggccga tcggccgctc gacgtcggga tcgaggccca cccgccacag
     3841 gtctgactga cagttgcgta tcacttccag cacacgtgtg ggacgtagcg atcagccgag
     3901 tgcggctgcg aggatagccc acaggattca ggatagtgga tatcgctgtg cgggccggcg
     3961 aaagtcgact ggttcgcagc gatgacggcg tcatttttca gccggtagaa gcggtccttg
     4021 tcgaaggcgt atggctcgtc ggtcacaata cccagcaacc cgcgaaaaaa ctggtttagt
     4081 ttagtagggg gcgcggcccc agacgttacc tgctggggag taccgacaca ccctgtcctg
     4141 accccacgcc ccgctgtggc attcggaatg tttcgaaggt ccgatgatat tcgcccaacc
     4201 ctgtgccccg ttggctagcg tgctgtccca ggccaggggg cccaggagcg gcgacgcatt
     4261 ggtagcggcg cgcgcttgat tatggatctg gagcatcgtg cctttttcgg cggcactgat
     4321 cgtcgagggg gccgtcgctg cggagggggg cgggcaatcc cctcgtgccg ctgaaccccc
     4381 ggcaggcagc aacattaccg ccctcgctgt gatcacagtg ggctgtgcga gttgcgctgc
     4441 ggcagcgatc gccggaagta gcacgctacc tgcgccaaga gcaattgcaa cggccccggc
     4501 tattgtgaag cggcgcggcc cgaaaaactt aaccatggca gtcttcttcc tgattagtgg
     4561 cccccgggcc gccatcgctg gttcccgaag cgtgaccggg ccgcctgaca cttgtgaccc
     4621 caacgccagt cgctcctagc ggcaaagagg atgaacgaaa gctcgtagat acccctcggc
     4681 caactcgatc aggcgaactt gggtggtaag gacctctgcc ttggtcgcgg tcaccctcaa
     4741 atgagatcgg cttggagttg cgcgggatca acttcgcgat gcgaatggag cgagaggggg
     4801 cgcgtgcccc tcacggcagg ccctggccgg ccagcgatag ccgaccagtg aattgtgggg
     4861 actcggggcg ggtcagatcg tcaccatcga agtcgacgag accaccccgc acctctatga
     4921 ccatcgcgac agtggatcaa gatgcagtag cggatctcag tgcggtggca tgtctaaccc
     4981 catctcgagg tcagagcatt gccttcacag ccgcgcggcg atccggtgct ccagccatat
     5041 agcgaccttc cgaacctgac gctggctcac gagacccggt ccgaaatccg ccttcagcgg
     5101 gctcaacggg gttattcggg tgccagtcag cccgctgaaa tgcgggccag gtcctcactc
     5161 gccggtgtgc agggcggtgg tgaaggtcgt ccactgggcg gaggtgacga tcagggctgg
     5221 gccgctgggg ttcttggaat cccggacggc gcggtgtccg ccgtcgagat cggcgacctc
     5281 cacgcaactc gcttggccgt tgctgcggct gctcttgcgc caagtggcgc tggacaggtc
     5341 ggttgtgctc actttcctaa ctcccttgtc acttgagtga tcagctcctg ggaggccctt
     5401 tcgtccagag aagactccca gatgttcttg aacgcggtgt cgtaccgagc gacctcgtga
     5461 ggcttgtcca gatacagcgc tccggtgaag ctctcgacgt agaccgtggg tggctcggta
     5521 tcctggccgt tgccgttgag cgggaaccgc agaagctcga acgttcccga catgatgccg
     5581 tggtgcagcc cggcgccgaa gggcaccacc cgcagcgaca cggtaggcag ctcactaact
     5641 tcttccagcc gcttgagctg accgcgtgcg gtctcctcgc cgccgaccgg gcgatgcagg
     5701 atggcctcgt tgagcacaac gtcgaatacc ggggggttgg tgatcctggt cagcagcgct
     5761 tggcgcgcga ggcggacgtg cacccgtcgt tcgatctcgg cgtccgccac gcccgggttg
     5821 tccgcccgga tcacggcgcg agcgtagtcc tcggtctgga acaggccggg caccagctca
     5881 gactcgtacc agctgaagtg cgacgcggct tcctccaatc cgatgtagac atcgaagtac
     5941 tccgggatgg cgtcgccgta ggagtgccac cagccgcggg ccttggtctc cttggccagg
     6001 cccatgagcg cctcggtgat gtcctgtggt gcgccgtaga ccttgcacat cgcctccacg
     6061 tcgaggctgc gcagggaggt ctgcccggtc tcgatgcgcc agatcttggc ctcggaccac
     6121 tccaactgcg ctcccgccgc gcgcacggtg agccgcgatt tgttacgcag gtcgcgcagg
     6181 taccggccga gttgccggcg gggcacggtc gagcccgtcg tcgtgatggc ctcggtcatc
     6241 gtccacctct ctcaccgtga gggaatccta cacccggaat gaaagcattc ccgggctcat
     6301 ttcag
//
LOCUS       DASVXZ010000111         9843 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_102144, whole genome shotgun sequence.
ACCESSION   DASVXZ010000111 DASVXZ010000000
VERSION     DASVXZ010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9843
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102144"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..1003)
                     /locus_tag="VF788_02135"
     CDS             complement(23..1003)
                     /locus_tag="VF788_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase"
                     /protein_id="HEX8933000.1"
                     /translation="MSRPELHLFTRSDLADLEISPAEVISAVREGYLALANGASRCPT
                     KLMMPLPEAARDAVSYMMLGYDANSQQVGFKTSYRQGSDNREKYYTVISLYDDTTGLP
                     FALMDCDRVGASRTPATTALIAEACAKPDARSVLMIGTGVQGHNTLPYLLTVLPKLDR
                     LMLYGTHPDGIDSTIEVFQRHFPDREIELVPDVPSAVRESDVVVVASGRAAHPKVEIS
                     WMRPGGLMVSVSSKGVASSALQKADYAIATSEGQLGVTGSRFAAADGSAAIDAEFPDV
                     LAGRAPGRRTPTDRVFAFSSGMVITDIPVAHALATRAIAAGRGQRVRLWS"
     gene            1746..3092
                     /locus_tag="VF788_02140"
     CDS             1746..3092
                     /locus_tag="VF788_02140"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8933001.1"
                     /translation="MNESDYLILSLLYDTLTVPGSSPIVAPRLATRWEPSPDLRRWRF
                     ELAEGARFHDGTPLSSEDVVWSMRRLRESSIGASRLPGIDVQGITSDGPRTVVVESNY
                     PNSEIPVLMRLTTFVIKNGTTDPAGTPGTGPFKLEWFRDGNARLVRNDNWFGGRVLLD
                     AIEVQLFEKPQTMANALLSGNIDLASNVGTVAARVAEGRDGVTIIRRRNDTAMSVVMH
                     AADGPYADPRVREAFRFAIDREAMVKQVLGGYGSVGNDIMGTADPVFARDLPQRKQDR
                     ARAGTLLDEAGFDRSKQYQVLTTEDVPGLAESAVLFAQQMKGVGVKIDVVKQESSTFL
                     GQSRGKAPLYTSYWGTNDSVIFCAGKLLLSDSTFNEAAWRDPDFDSAYRSALSTPDLN
                     RRIQLVHDLQKIEYDRSGYLLWGMAEGMDLAKTTVQGLPQLPGYGRVQLEKTWLSA"
     gene            3077..4045
                     /locus_tag="VF788_02145"
     CDS             3077..4045
                     /locus_tag="VF788_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933002.1"
                     /translation="MAERLRERLRSSRSALVAGLLLRRMALLVVLLAVTFLAVEILPT
                     DAARATLDIEASPAELAARRTQLGLDQPVAVRFLRWMGGLATGDLGVSARGRPVWDVV
                     GQPLQNTLVLGVLALMLTVLLALALGCVSVLRPGSSLDRVVGSSSTMILALPEFVVAN
                     ALVVVFALWLHLLPSVTVASSSGRPASPAMLVLPVLALTVRQIGWNTRIVRSALAEQL
                     PAPHVDSAIMDGLPRHRILLHYLLPGAVPTIAAGVATSVGMVLGGVVAVETIFNFPGM
                     GAVLVDAIRNRDAPLVAAVVALTGLAITVVLVASDLVRAWAIGSKS"
     gene            4042..4845
                     /locus_tag="VF788_02150"
     CDS             4042..4845
                     /locus_tag="VF788_02150"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX8933003.1"
                     /translation="MNRVSVGLLPVLAVILLALLGPLFAPHGITEPVTAPYALPGPGV
                     PLGGDQLGRDVLSRLLAGGRDLLVASVAIAVVVTGIAAILGAVAALRPTLGMLVERTA
                     DILILLPVALGIMVIGVSWPGSGRIPVVVAAIVLGTPFAFRVAAAAAAPVAASGFVEV
                     ASAQGERTLSLVFREIVPNLRATLLTLLGLRFVEAVYVVTTASFLEVGTQPPTADWAL
                     MIRENADGTLLNPWAVLAPSLAIAVLAVSVNLAFDVLTPKARNRAVTQL"
     gene            4842..6296
                     /locus_tag="VF788_02155"
     CDS             4842..6296
                     /locus_tag="VF788_02155"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8933004.1"
                     /translation="MTTVLDVLDFSISTVDGLSLTRCDRLTAGKGCIIGVVGPSGSGK
                     TTLLRGIAGALPNGPLTVRGSLAVLGKPVLALPANELRQFRREHVGFVGQDPASRLNP
                     RMRIRHLLAEAAGGKQFSAQLILADVGLPATEELLRRKPGQLSGGQQRRVALARALVR
                     RPDVLLLDEPTVGLDAALRKRLCGLLRDRAEEGTTILLACHDMPLIEELVDEVVDLGA
                     SAGVPEVLTDHRAPDAGGDEVLRVDGLSAWVDSRRRTPILHGVDLRLTSRGALAVVGV
                     SGSGKTTLARAITGLHKYIEGRIALGEALMPLRVQRRGPAQRRRIQLIPQDPLGTLNP
                     SRTVGATLSRPLRLYRKVSARELPIQITGLLDTVGLAEEFSERYPHELSGGQRQRVAI
                     ARALAADPDILICDEITSSLDASTTEDIMNVLGELRSRRDVALIVITHDIPLAIRHTG
                     TTLVLEEGRVVRAGATSEVLGSSRPPSMARPSSG"
     gene            complement(6322..6804)
                     /locus_tag="VF788_02160"
     CDS             complement(6322..6804)
                     /locus_tag="VF788_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933005.1"
                     /translation="MPGSPSVADDLRIANRIGTGLGRLIRLVKRTAVVPGDDLDRPSL
                     TLLHTLDCAGLSRVTALAAAVHSDPSTVSRQAAHLVGLGLVERRADPGDGRASLLAIT
                     DAGTDLLARARQRRDERIASIIDSWPPAERAQFADLIDRFTAAYEENWCTGRTGPSRN
                     "
     gene            complement(7022..7864)
                     /locus_tag="VF788_02165"
     CDS             complement(7022..7864)
                     /locus_tag="VF788_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX8933006.1"
                     /translation="MAEKRELAEPPPGGGRLDLRADCERCFGLCCVAPAFSASADFAI
                     DKDAGQACTHLQSDFRCGIHDNLRKRGFPGCTAYDCFGAGQKVTHVTFGGQDWRRVRQ
                     TAQQMFEVFVIMRQLHELLWYLVEALSRQPARRLHGQLGVALEETERLTHCGPDVIME
                     LDVGAHRRDVSALLLRTSELVRGEARRHPIDRPGADLVGADLRGADLRAANLRGAYLI
                     GADLRDADLRVADLIGADFRSADLRGADLRDSIFLTRSQLGAAGGDASTKLPPPLPRP
                     AHWL"
     gene            complement(7909..8163)
                     /locus_tag="VF788_02170"
     CDS             complement(7909..8163)
                     /locus_tag="VF788_02170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933007.1"
                     /translation="MAKFERTRRRELRFLSNPCYGDTAVKGGAVMGLILGLLVLWLVL
                     VIIGFTIKALLWLAIVGLVLFVVTGVFGAIRGRSRRGVTR"
     gene            complement(8248..8460)
                     /locus_tag="VF788_02175"
     CDS             complement(8248..8460)
                     /locus_tag="VF788_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933008.1"
                     /translation="MTAQLPPASGHSGDDFPRPRPASRSTLISDVGRGVGVQPGESDP
                     ARMLSGVLVLVVATITMALMLAWWLA"
     gene            8902..>9843
                     /locus_tag="VF788_02180"
     CDS             8902..>9843
                     /locus_tag="VF788_02180"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8933009.1"
                     /translation="MIVVGLGVSWILDGLEVQIVSAVGSVLQEPETLGLSTADVGLVG
                     SVYLLGEVVGALFFGRITDRFGRRNIFIITLAIYLIGSGIAGLSFNLWFLLIFRFIAG
                     AGIGGEYAAINSAIDELIPAHYRGRVDIAINGTYWAGAMIGAAASVFLLNPNLLAVGI
                     GWRIGFFIGPVLGILIIFLRRHIPESPRWLMTHGRQQEAEQIVDDIESGLRDQGHELD
                     PVDDTKRIEVTPQGPVRYLQIAKVMLREYPTRSLLGFTMMVTQAFLYNAIFFTYSLVL
                     ANVYNVPSRDIGYYFFPFAAGNLLGHCCSARCSTPSAD"
BASE COUNT         1738 a         3164 c         3142 g         1799 t
ORIGIN      
        1 ggcaacgaga tcgtcgacgt ggtcagctcc atagccgcac ccgctgcccc cgacctgcag
       61 cgatcgcgcg cgtggccaag gcatgcgcga ctgggatgtc ggtaatgacc atgccgctgc
      121 tgaaagcgaa gacccggtcc gtcggagtgc gccggcccgg cgcccgacct gcgagcacgt
      181 ccgggaactc agcgtcgatc gcggcacttc catctgctgc ggcaaaacgg gagccagtga
      241 ctcccagctg tccttcgctg gttgcaatgg cgtagtccgc tttctggagc gccgatgaag
      301 cgacaccctt actggaaacg gacaccatga gtccacccgg tcgcatccag ctgatttcca
      361 ccttgggatg tgcagcgcga ccggaagcaa cgacaacaac atcggactcc ctcaccgccg
      421 agggcacatc agggacgagc tcgatttctc ggtcggggaa gtgtcgctgg aacacctcga
      481 tggtcgaatc aataccgtcc gggtgagtgc cgtacagcat aaggcggtcc agttttggga
      541 gaaccgtcag caagtacgga agggtattat gaccttgaac gcccgttcca atcatcaaga
      601 cggagcgagc atctggcttg gcacacgcct cggcgatcag cgcagttgtc gcaggtgtcc
      661 gcgaagcgcc gacccggtca cagtccatca gcgcgaacgg gagtccggta gtgtcgtcgt
      721 acaaactgat gaccgtgtag tatttttccc ggttgtcgct cccctgccgg tacgaagtct
      781 tgaagccgac ctgttgcgaa ttcgcgtcgt agccgagcat catatacgaa accgcgtctc
      841 ttgcggcctc aggtaaaggc atcatcagct ttgtgggaca acgggaagcc ccgttcgcca
      901 aagccagata gccttcacgc accgcagaga tcacttcggc tgggctgatc tctagatcag
      961 cgaggtcgct acgggtaaaa agatgcagct ctggccgact catcaattga cctcacaatc
     1021 tgataattta ttcaccccct cgccctcttt tgttcaccgg gattgctggt ggcctaccat
     1081 ctccgaacga gcgcgccacg acagaggcca gatgcgatcc ggccattaca gtcggcctcg
     1141 agttggcagc cagagactga caaccagtcg atcaaccaac ttctgtcagc gacgtgagtc
     1201 acgctaaccc ggccgcagta gaaaggcaag cctaacctaa ctattacata gcgtagctac
     1261 gggcttcctg tcccgcgatc atccgacgca gcgggggtga tctgacgggc gaacgcacca
     1321 gccaccgacg tgtcagccag cgactgggcc gatctagcgt gactgatggt aaccattgaa
     1381 agcagaggta gcctgacagc gccagatatc acctatttgg cgggttgttg gcgaccaagg
     1441 gtcacttacg cttgaatgat aagtgaggct gccctaactt tgttgctcac tctgcgtaga
     1501 ttgcggggaa cctgcgttaa ccaacggctg ccagcggagg atctgtggag ttgactcgac
     1561 gacggctgct gggagccggc gcggcgctgg ggaccagcat cctgctgtcc tcttgcggcg
     1621 cagcgggaat tggcgggtct gcaggcgctg gtgcgccggt cggtccgccg cgaccaggtg
     1681 gaacgctggc tgtcggagcc ttgggaaggg cctcatcgat tacccgtgat ccgcacggtg
     1741 tccaggtgaa cgaaagcgat tacctgatct tgagcctgct gtacgacaca ttgaccgtgc
     1801 cgggcagctc accgatcgtc gcgccccgtt tggcaacccg ctgggagcct agtccggacc
     1861 tgcgtcgatg gcgcttcgag ttggccgaag gtgctcggtt tcatgacggc acaccgttga
     1921 gctccgagga cgtggtgtgg tcgatgcgcc ggttacggga gtcgtcaatc ggtgcctccc
     1981 gattgccggg aatcgatgtg cagggaatca cgtcggacgg tccacgcacg gtggtggtcg
     2041 aatccaacta ccccaacagt gaaattccgg tgttgatgcg cctgaccacc ttcgtgatca
     2101 agaatgggac gaccgatccg gccggcactc ccggcaccgg accgttcaag ctggagtggt
     2161 ttcgcgacgg caacgcccgt ttggtgcgta acgacaactg gttcggcggc cgagtattgc
     2221 tagacgctat cgaggttcag ctgttcgaga agccgcaaac gatggccaac gcattgctca
     2281 gcgggaacat cgacctcgcg tccaatgtcg gaacggtggc cgcgcgggta gcagaagggc
     2341 gtgatggggt cacgatcatc cggcgacgga acgacacggc gatgtcggtg gtgatgcatg
     2401 ccgcagatgg accctacgcc gatccgcgag tccgggaagc cttccggttc gcgatcgacc
     2461 gggaggcgat ggtcaagcag gtgctaggtg gatacggctc ggtcggaaac gacatcatgg
     2521 gtaccgccga tccggtgttc gcccgcgacc tgccgcagcg caagcaggac cgggccaggg
     2581 ccggcacgct actcgacgag gccggctttg accgctcgaa gcagtaccag gtactgacca
     2641 ccgaggacgt tcccggcctc gccgaatccg ccgtcctgtt cgcccagcag atgaagggcg
     2701 tcggcgtgaa gatcgatgtc gtcaaacagg agtcgagcac gttcctgggc cagagcaggg
     2761 gaaaagcacc cctctacacc tcgtactggg gtaccaacga ctctgtgatc ttctgcgcgg
     2821 gcaagcttct gctgtccgac tccacgttca acgaagcggc ttggcgtgat ccggatttcg
     2881 acagcgccta ccgctccgcg cttagtacgc ctgacctgaa ccggcgcata cagctcgtgc
     2941 acgatctgca gaagattgaa tacgaccggt ccgggtacct gttgtggggc atggccgagg
     3001 ggatggatct cgccaagacc accgtgcagg gacttcccca actgcccggc tacgggcggg
     3061 tgcagctgga aaagacgtgg ctgagcgctt gagggagcgc ctgagaagta gccggagcgc
     3121 cctcgtcgcg gggctgctgc tgcgtcgtat ggcgctgctc gtggtgttgc tcgccgtgac
     3181 gttcctcgcg gtcgaaattc tgcccaccga cgccgctcgg gcaaccctgg acatcgaagc
     3241 gtcgccagcc gaactggccg cgcggcggac acagctggga ctcgaccagc cggtagccgt
     3301 ccggttcctg cgctggatgg gcggactcgc gaccggcgac ctgggcgtat cggcccgggg
     3361 ccgaccggtc tgggatgtcg tgggtcagcc cttgcagaac acgctcgtgc tgggcgtgct
     3421 cgcgctgatg ctgaccgtgc tgctggctct ggccctgggg tgtgtctcgg tgctgcgccc
     3481 cgggagctcg ctggaccggg tggtgggctc ctcgtccacg atgatcctgg cactgcccga
     3541 attcgtggtg gcaaatgcct tggtcgtggt gtttgcactg tggttgcacc tactgccatc
     3601 ggtgacggtg gcctccagca gcggaaggcc ggcatccccg gcgatgctgg ttcttcccgt
     3661 gctcgcgctc acggtgcggc agatcggctg gaacacccgg atcgtgcgca gcgcgctggc
     3721 cgagcagcta ccagcgcccc acgtggactc ggcgatcatg gatggtttgc cgcgccaccg
     3781 gatcctgctc cattacctgc ttcccggtgc cgttcccacg atcgccgccg gtgtggctac
     3841 ctcggtgggc atggtgttgg gcggcgtcgt ggccgtggag accatcttca actttcccgg
     3901 gatgggtgcg gtgctcgtcg acgccatccg taaccgcgat gctccgctgg tagccgctgt
     3961 ggtagccctg accggtttgg cgatcactgt ggtgctggtg gcgtccgacc tggtccgagc
     4021 ctgggccatc gggagcaagt cgtgaaccgc gtcagcgtag ggctgctccc agttctggcg
     4081 gtgatcctgc tggcacttct gggcccgttg ttcgcgccgc acgggatcac cgagccggtc
     4141 actgcaccgt acgcactgcc cgggcccggt gttccgctcg gcggtgacca gctcggacgc
     4201 gatgtcctca gccggttgct cgccggcggt cgcgaccttc tggtggcctc ggtggcgatc
     4261 gctgtggtcg tcacgggaat agccgcgata ctgggtgccg tggccgcgct gcgaccgacg
     4321 ttgggcatgc tcgtcgagcg caccgcggac atcctgatcc tgcttcccgt ggcactgggc
     4381 atcatggtga tcggagtttc ctggcccggc tccggccgga taccggtcgt cgtggcagct
     4441 atcgtcctgg gcacaccgtt cgcattccgg gtcgcggccg cggccgcggc tccggtcgca
     4501 gcgtccggct tcgtcgaagt cgcctcagcc caaggtgagc gaacgctgtc cctggtcttc
     4561 cgtgagatcg tccccaacct ccgcgccacc ttgttgacgc tgctggggtt gcgtttcgtc
     4621 gaggccgtgt acgtggtcac cacggcgagc ttcctggagg tcggtaccca gcctcccacc
     4681 gccgactggg cgttgatgat ccgcgagaac gcggacggaa cgctgctcaa cccatgggct
     4741 gtgctcgcac ccagtctcgc gatcgccgta ctggcggtga gcgtgaacct cgccttcgac
     4801 gtgctgacgc cgaaggcgag gaatcgggcg gtgacgcagc tgtgacgacc gtcctcgacg
     4861 ttctggactt ctcgatatcc accgtggacg gtctttctct cacccgatgt gaccggctca
     4921 ccgcgggaaa gggctgcatc atcggcgtcg tcgggccatc aggttccggc aaaaccacct
     4981 tgctccgcgg catcgcgggg gcactgccca acgggccgct caccgtgcga ggcagcttgg
     5041 ccgtcctcgg caagccggtg ctggcattgc cggcgaacga actgcggcag ttcaggcgag
     5101 agcacgtcgg cttcgtcggt caggatccgg catcccggct gaacccgcgt atgcgcattc
     5161 gccacttgct cgccgaagcc gccggaggca aacagttcag cgcgcaacta attctggccg
     5221 atgtcggcct accggccacc gaggagctgc tgcggcgcaa gcccggacaa ctctccggcg
     5281 gccaacagag acgggtggct ctggcgcgag ccctggtccg gcgacccgat gtgctgctgc
     5341 tcgacgaacc caccgtgggc ttggacgccg ccctccggaa aaggttgtgc gggctgctcc
     5401 gcgaccgggc cgaggaggga acgacgatcc tcctcgcctg ccatgacatg ccgttgatcg
     5461 aagagctcgt cgatgaggtc gtcgacctcg gcgcaagcgc cggcgtgccg gaggtactca
     5521 ctgaccaccg ggcaccggac gcaggcgggg acgaggttct ccgggttgac ggtctgtccg
     5581 cgtgggttga ctcccgccga cggaccccga tcctgcacgg tgtcgacctg cgcctgacca
     5641 gccgtggcgc gctcgcagtt gtcggcgtct ccggcagcgg aaagaccacg ctcgcccggg
     5701 cgatcaccgg cctgcacaag tacatcgagg gacgcatcgc cctcggcgag gcgctgatgc
     5761 cgttgcgcgt gcagcgccgc ggtcccgcgc agcgcagacg catccagctc atcccgcagg
     5821 atccgctggg cacgttgaac cccagccgca ctgtgggcgc gacactgagc cggccgctac
     5881 gcctgtaccg gaaggtctcg gcgcgcgagc tccccatcca gatcaccggc ctgctcgaca
     5941 ccgtgggtct cgccgaggag ttcagcgagc gctatcccca cgagctctcc ggcggtcaac
     6001 gtcagcgagt agccatcgca cgcgctctcg cggccgatcc ggacatcctc atctgtgatg
     6061 agatcacctc gtcgctggac gcgtcgacca ccgaggacat catgaacgtg ctcggggaac
     6121 tgcgcagtcg acgcgacgtg gcactcatcg tgatcaccca tgacatcccg ctcgcaatcc
     6181 ggcacaccgg caccaccctg gttctcgaag aagggcgcgt tgtccgggcc ggcgccacgt
     6241 cagaggttct ggggagctcc cgccctccgt caatggcacg tcccagctcg gggtgatcac
     6301 cgcgagcagg cagctggtga gtcagttccg agacgggccc gtccggcccg tgcaccagtt
     6361 ctcctcgtac gcggcagtga agcgatcgat caggtcggcg aattgcgcgc gctctgccgg
     6421 gggccatgag tcgatgatcg acgcgatccg ctcgtcgcgg cgttgccggg cgcgcgctaa
     6481 cagatcggtt cccgcatcgg tgatggccag caacgacgca cgaccgtcac caggatcagc
     6541 ccgccgctcc accagcccca gcccgacgag atgggcggcc tgcctgctca ccgtggacgg
     6601 gtctgaatgc accgctgcag ccagcgcggt gacccgcgag agtccggcgc agtccagcgt
     6661 gtgcagcagg gtgagcgacg gccgatcaag atcgtccccg gggacgacgg cagtacgttt
     6721 gacgaggcgg atcagccgac ccagtcccgt gccgatgcgg ttagcgatcc tgaggtcatc
     6781 ggctaccgat ggggaaccag gcatcgaggc caccttcact gcatgccaca aacaagtatc
     6841 tgtatgcagt caatccttca ctgctttgcg gatctcggca aggacattcc cctacctgtc
     6901 ccggcgtggg tgagggtacg atcacccctc gcccgtcagc ggcgagtgcc gggtcggctc
     6961 cactgccggt acgtggtgcg gcgcggagat taggtcggca tgagcgctgc gagctcggcg
     7021 actacaacca atgcgcaggg cgaggaagcg ggggcggcaa cttcgtgctg gcatcgccgc
     7081 ctgccgcgcc gagctgtgat cgggtgagaa aaatactgtc cctgaggtcg gcacctctca
     7141 gatcagcact ccgaaagtca gctccgatga gatcagccac tctcagatcg gcgtccctga
     7201 ggtcagctcc aatgaggtat gcccctctca ggttggctgc cctgagatcg gcgcctctga
     7261 ggtcggcccc tacgagatcg gcacctgggc ggtcgatcgg gtgccgccga gcttcgcctc
     7321 gcacgagttc gctggtgcgc agcagcaagg cactgacatc tcgccggtgt gctcccacgt
     7381 ccaattccat gatcacatcg ggcccgcaat gagtgagacg ttcggtctcc tcgagcgcaa
     7441 cgccgagctg accgtgcagc cggcgggccg gttgccgcga cagcgcttcg actagatacc
     7501 agagcagctc atggagctgc cgcatgatca cgaaaacctc gaacatttgc tgcgcggttt
     7561 gccggacacg ccgccagtcc tgcccgccga aagtgacatg ggtgaccttt tgccccgcac
     7621 cgaagcagtc gtaagcggtg cagcccggaa aaccccgttt cctgagattg tcgtgaatgc
     7681 cgcagcggaa gtctgactgc agatgagtac aggcttgccc ggcgtcttta tcgatcgcga
     7741 aatccgccga ggcggaaaag gccggcgcga cacagcacag cccgaagcag cgctcgcagt
     7801 cagctcgcag gtcaaggcga cctccgccgg gcggcggttc ggccagttcg cgcttctcag
     7861 ccaatcgtcc tgcctactcc ctacccatct ggggtgcagt ataggcagct agcgtgtgac
     7921 accccggcgg ctccgaccgc ggatcgcacc gaacacgccg gtgaccacaa atagcaccag
     7981 gccgacgatc gccaaccaca gcaatgcctt gatggtgaac ccaatgatga cgagcacaag
     8041 ccatagtacg agcaagccga ggatcaaacc catgaccgca ccacctttga ccgctgtgtc
     8101 cccgtagcag gggttggaca gaaatcgaag ttcccggcgc cgagtcctct caaacttcgc
     8161 catccggacg gggagcctcc ggctcggcgg gccggcaagc ggtcggtcgg gcgctcaagg
     8221 cggcacgtcg cgccaccccg acggagctca ggccagccac cacgccagca tcagcgccat
     8281 ggtgatggtg gcgaccacaa gcacgagcac cccggacaac atccgagccg gatccgactc
     8341 acccggctgc acaccgacac cccggcctac gtcggagatc agtgtgctgc ggctggcagg
     8401 ccgcggtcga gggaagtcgt cgccgctatg gccagacgcc ggggggagtt gcgccgtcat
     8461 gccacatacg ctacgaagcc agtggttacc gcctggcccg atctcggtta gccgcaggta
     8521 aaaactcgag aatggacctg ccctggagcg gcgctgtcct cctttcgggc tggcccaccg
     8581 agccggagag cccgggatca ccaccatcat cgtgcgctga tgctggcgtg gtgcctgacc
     8641 gaaacccgat tcgttatcag gtccggtgca ctggtcggat caccacccag ctaccgctca
     8701 tcggcactga cgccatcaat gagtgcgagc tggacgaagc ggttggcgca tgagccggcg
     8761 gaggatataa acggctgatg cggagtgctc gccagcgtac agaggagcgc gatgaccacc
     8821 tctagccagc cgactgccgg cgcagtctca agccttgtac cagcgcggat ggatcggctc
     8881 ccatggggcc ggttccactg gatgatcgtg gttggtcttg gagtctcgtg gatcctcgac
     8941 ggtctcgagg ttcagattgt ctccgccgtt ggctcggttt tacaggaacc ggagacgctg
     9001 ggcctatcca ccgcagacgt cggcctggtc ggttcggtct acctgctcgg tgaggtcgta
     9061 ggcgcgctgt tcttcggaag gattaccgac agattcggcc gtcggaatat ctttattatc
     9121 accttggcaa tttatctgat cgggagcggc atcgcaggac tgtccttcaa cttgtggttc
     9181 ctgctcatat tccggttcat cgcgggcgct ggcattggcg gcgagtacgc ggcgatcaac
     9241 tccgcgatcg acgagctgat ccccgcgcac taccggggcc gtgtggacat cgcaatcaat
     9301 ggcacgtact gggcaggggc gatgatcggc gccgcagcct cggtcttcct gctgaacccc
     9361 aacctgctgg cggtgggaat cggctggcgc atcggcttct tcattggccc ggtgctgggc
     9421 attctgatta tcttcctgcg acggcacatc ccggagagcc cgcgctggct catgacgcat
     9481 ggacggcagc aggaggccga gcaaatcgtc gacgacatcg agtcgggttt gcgcgaccag
     9541 ggccatgaac tcgatcccgt ggacgatacc aagcgcattg aagtcacccc tcagggacct
     9601 gtcagatatc tccaaattgc taaagttatg ctacgggagt atcctacacg atccttgctc
     9661 ggctttacga tgatggtgac ccaggctttc ctgtataacg caatcttttt tacctattcg
     9721 ctagtgctgg cgaacgtgta caacgtgcca tccagagaca tcggatacta cttcttcccg
     9781 ttcgccgcag gcaatctact tggccattgc tgctcggccc gctgttcgac accgtcggcc
     9841 gac
//
LOCUS       DASVXZ010000112         7191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1619656, whole genome shotgun sequence.
ACCESSION   DASVXZ010000112 DASVXZ010000000
VERSION     DASVXZ010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7191
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1619656"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1048)
                     /gene="dinB"
                     /locus_tag="VF788_02185"
                     /pseudo
     CDS             complement(1..1048)
                     /gene="dinB"
                     /locus_tag="VF788_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804482.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
     gene            complement(1100..1831)
                     /locus_tag="VF788_02190"
     CDS             complement(1100..1831)
                     /locus_tag="VF788_02190"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8933010.1"
                     /translation="MRGCAVHGALEAEVAAARLRLGATPRVLDVGGGSGMWAVPLARS
                     GCLVTVVEPSPNALATLHRRATEAGVQESVNPVQGDADSLADAVPAASADLVLGHGLL
                     EVVEDPGAAVQALADATAPGGAVSVLVANRYAAVLVRALAGRLAEALRLLEDPDGRLG
                     GSDPVLRRFDTGRLAALLESSGLSVELLQGDAVVTDLVPGGVLEAHPGAADQLAELEL
                     SAARRAPLRDIASRLHALARRPAVS"
     gene            1940..2758
                     /locus_tag="VF788_02195"
     CDS             1940..2758
                     /locus_tag="VF788_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEX8933011.1"
                     /translation="MRTVAVLSLKGGVGKTSVVLGLAGAAQQRNIRTLVVDLDPQGNC
                     TATLDPGATRFSLADVLADPRLPVLTNAIAPSAWGPNLDVLVGGEETETHNRPDPDRA
                     GLGRLDQALSRLDMVTDSPAPYRLVLLDCPPSLGQLTRSALVAADRALLITEPTIYAV
                     AGVQRAFEAVQAEREHNPDLQPLGVVINRVRARSSEHGYRISELREIFGPLVLSTVLP
                     DRSAVQQAQGAGSPIQHWATPGAREISVAFDVLLARMLRTSQLRRRNPTGLTQT"
     gene            2933..3301
                     /locus_tag="VF788_02200"
     CDS             2933..3301
                     /locus_tag="VF788_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEX8933012.1"
                     /translation="MDNVVWVCQGLLAVLFLASGCAKISMSRERLLATGQTGIAPFPM
                     PLVRLVAASELLGAVSLIVPWASGALPVLTPVAAAGLGVVMIGAAGSHLHLREPRTAG
                     LNVVILVVCVFVAMARFAGQ"
     gene            3384..4319
                     /locus_tag="VF788_02205"
     CDS             3384..4319
                     /locus_tag="VF788_02205"
                     /inference="COORDINATES: protein motif:HMM:NF007214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor"
                     /protein_id="HEX8933013.1"
                     /translation="MAGTPVNIPDLEDLYRDLRPFGFAIAYRMLGSVSEAEDVVQEAF
                     VRLSRTTDEKIDSPKAYLATVTTRLAIDALRSARTQRETYFGPWLPEPLVHEYTADVA
                     EAAETAESLTMAFLIILEKLSPLERAVFLMREVFAYEYDEIARIVSKSQANCRQVARR
                     ARNRIENGKPRFEVSREKHTTLAQRFFAACQDGDVDGLVTLLASDAAFYGDGGNKGTG
                     VPHPVYGRDNVVKLLLGLFRVAHRLDVQLLAVEVNGQPGAKCLDSAGRLINVLSLDIA
                     DGTVHVVRSIVNPEKLRHLGSLSPIGRRTQKADAR"
     gene            complement(4337..5161)
                     /locus_tag="VF788_02210"
     CDS             complement(4337..5161)
                     /locus_tag="VF788_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEX8933014.1"
                     /translation="MANPFVKAWKYLMASFSSKIDEYADPKVQIQQAIEEAQRQHQAL
                     SQQAAAVIGNQRQLEVKLNRQLGEIEKLQSSARQALVLADEARGLGDQTKAQQYEQAA
                     ESFATQLVTAEQSVEDLKTLHDQSLQAAGQAKQAVERNAMVLQQKIAERTKLLSQLEQ
                     AKMQEQVSASLQSMTELAAPGNTPSLDEVRDKIERRYANALGAAELAQNSVQGRMLEV
                     QQSSLDMAGRSRLEQIRASIHGAPIAGEVTAGEPAAQPASPKQVLPPQGQPQPGQG"
     gene            complement(5414..5635)
                     /locus_tag="VF788_02215"
                     /pseudo
     CDS             complement(5414..5635)
                     /locus_tag="VF788_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020637708.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(5763..6356)
                     /gene="pgsA"
                     /locus_tag="VF788_02220"
     CDS             complement(5763..6356)
                     /gene="pgsA"
                     /locus_tag="VF788_02220"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005439624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEX8933015.1"
                     /translation="MSPPPPPTRVPLWNLANGLTMSRLVLVPVFVIALFVRDGTDPAW
                     RVTAAVILGVASLTDRFDGDLARRRGQVTNFGTIADPIADKALIGSALVGLSVLGELS
                     WWVTLLIAARELAVTALRLWVLRYGVIPASRGGKVKAFTQAVAIVLYVLPLPLAAQPV
                     RWVIMGIAVVLTLVTGIDYVVRALRLRASGRRAIALS"
     gene            complement(6353..>7191)
                     /locus_tag="VF788_02225"
     CDS             complement(6353..>7191)
                     /locus_tag="VF788_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX8933016.1"
                     /translation="SRSLDDVLAEAIWLAGTGVRELILVSENSTSYGKDLGRSGALEE
                     LLRRLAGVPGVLRTRVSYLQPAETRPSLVTTITATAGVASYFDLSFQHASEPVLRRMR
                     RFGSRQSFLALLDQIRQHAPLAGVRSNVIVGFPGETEVDLAELERFLTEARLDAVGVF
                     GYSDEDGTEAAGLPGQHDADTVAERVARVSELVEQLTAQRAEDRVGESVDVLVEDTAE
                     EPCGRAEHQAPEVDGECVLVGPEAHSLAVGDLVRCRVIAAKGIDLIVEPMELTAPAGG
                     GR"
BASE COUNT         1297 a         2496 c         2248 g         1150 t
ORIGIN      
        1 tgggcgtcca gcagctcggc agccacggaa aatactgcct gcgcagagtc ggtcggcgtg
       61 gccagggttc gggagcgact gacagtggtg aagtcggggt agcgaatctt caaggcgata
      121 gtgcgcccgc gcaggccgcg atggcgcagc ccggcagtag cacgttcgac caaccgcaat
      181 agctcacggc gcaacaccgt ccggtcggtc acatcgtggg cgaaagtctc ctcggccccc
      241 agggactttt ccggcaggtc gggcaccact cgccgtcgtc tcggccgtta gcgagctcat
      301 ggaggtgctg tgcgctggcc gcgcccaccg cacgccgcaa tgcaggcagg ggcatacccg
      361 ccacgtcggc caccgtggtg catcccagcc ggcgcagtgc ctgtgcggtg cgtggaccca
      421 cgccccacaa cgccgagacc ggtaaagggt gcaagaattc caaaacaccg tcgacaggta
      481 ccacaaggag tccgtcaggc tttgccaacc ccgaggcgag cttggcgagg aacttgctgg
      541 gtgccacccc gaccgagcag gtcacccgat gcgtgtcgta gatctgtccg cggatccatt
      601 cgccgatccc ggccgggcgc attcccaacc tgcgcagcga cccaccgacg tcgaggaaag
      661 cctcatccag gctcagcggt tccaccaatg gagtgagctc acgaaacagc gtcatcactc
      721 cccgtgagac ctccgcgtag cggtggaact gtggaggcac gaactccgcg tgtgggcaca
      781 atcgccgggc ctgcaccacc ggcatcgccg aacggacgcc gaaggcccgg gcctgataag
      841 tcgccgacag cacgacaccg cgatctccgg ttgggttgtt gccgcccgcc accaccaccg
      901 gccgcccggc cagctcaggg cgttcgcgaa cctcgacgga ggcgtagaag gcgtccatgt
      961 cgacgtgcag cacagggcaa gcggtgtcat taccatgatc gacgtgacgg attgctgtgg
     1021 accgtgggag atccgcactg cgtcccacgc aaacctccat cgtgccacgc cttatcgaac
     1081 atttgttcga taaggtagcc tagctgaccg ccggacgcct agccagcgca tgcaatcggc
     1141 tggcgatgtc gcgtaggggc gcccgccggg ccgcggacaa ctccagctcc gcaagctgat
     1201 cggcggcacc cggatgagcc tccagcacac cgccgggcac caggtcggtg actaccgcat
     1261 cgccctgcaa cagctcgacg ctcagcccac tggactccag gagcgcggca aggcgcccgg
     1321 tgtcgaaacg acgcaacacc ggatcggaac caccgagccg gccgtctgga tcctccagca
     1381 accggagtgc ctcggccagc cgcccggcca acgcgcggac cagtaccgcc gcgtaccggt
     1441 tggccaccag gaccgagacg gcaccgccgg gtgcggtggc atcggcgagc gcctgaaccg
     1501 ccgcgccagg atcctcgacc acctcgagaa gaccatgacc gagcacgaga tcagcgctgg
     1561 ctgccggcac cgcatcggcc aacgagtcgg cgtcaccctg caccgggttg accgactcct
     1621 gcacgccagc ttcggtggcc ctgcggtgca gggtggccag cgcgttgggg cttggttcca
     1681 ccaccgttac caggcaaccg gatctagcca gtggcacggc ccacatgccg ctgccaccgc
     1741 ccacgtccag cacccggggg gtggcgccca gccgcaggcg tgccgcggcg acctcggcct
     1801 ccagcgcccc gtgcaccgcg cagcctcgca tgccagcacc ttagatgccc agctctcagg
     1861 gggcgcgcga gcgtgccggg tacagctgtg cgcaacccag gggaacgtca gcacaaccca
     1921 ggcaccataa gctgcaccgg tgcgaaccgt ggccgtgctc agcctcaaag gtggggtggg
     1981 caagacctcg gtcgtgctgg ggttggccgg tgccgcccaa cagcggaata tccggactct
     2041 ggtcgtggac ctggacccac aaggcaattg caccgccaca ctggatcctg gcgcgacgag
     2101 gttctcgctg gccgatgtac tggccgatcc gcgacttccg gtactcacga acgcaatcgc
     2161 acccagcgcg tgggggccga acctggatgt cctggtcggc ggcgaggaga ccgagacgca
     2221 caaccgaccg gatcccgatc gcgccgggct tgggcgcctc gaccaagcgc tgtccaggct
     2281 cgacatggtg accgacagcc cggcaccgta ccggctggtg ctgctggatt gcccaccctc
     2341 gctcggtcaa ctcacccggt cggcgctggt ggccgccgac cgggcactgc tgatcaccga
     2401 accgacgatc tatgccgtcg ccggcgtgca acgcgctttc gaagccgtgc aggctgagcg
     2461 tgagcacaac ccggacctgc aacctctcgg cgtagtgatc aaccgggtca gggcccgctc
     2521 cagcgagcac ggttatcgga tcagcgagct ccgagagatc ttcggcccat tggtgctctc
     2581 caccgtgcta ccggaccgct cggcggtcca acaggcccag ggcgccgggt cgcccattca
     2641 acactgggcg acccccggtg ctcgggagat ctccgtagcg ttcgacgtgc tgctggcccg
     2701 gatgctgcgc accagccagc tgcgccgtcg caacccaacg ggcctgactc aaacctgaac
     2761 tcgaccacca agtcccttgc cgcgtgtcgc cctctggtgt acgccgtgtc gtccagtacc
     2821 ggcttgtgca gtcccttcca ccggatcagg caacggctaa acgccgccag gctgtcacaa
     2881 ccaatagcgc tacttcgtct ccagtaagga gtccaaccgg gaggtggcgt cgatggataa
     2941 cgtcgtgtgg gtctgccagg gactgttggc ggtcctcttc ctggcatccg gctgcgcgaa
     3001 gatcagcatg tcgagggaac ggttgctggc gaccggccaa accgggatcg ctccgtttcc
     3061 catgcctctg gtacggctgg ttgccgcttc tgagctgctc ggcgccgtga gcctgattgt
     3121 gccgtgggcg agcggtgctc tgccagtgtt gactccggtc gcagcggccg gattgggcgt
     3181 ggtgatgatc ggcgcggcag gctctcacct gcacctacgt gaaccgcgca ccgccgggct
     3241 caacgtggta atcctggtcg tgtgcgtctt cgtcgccatg gcccgcttcg ctgggcagta
     3301 acttaacgac ggataaggaa ataaaaaatt gattagtgca gtgccgcggt gaagatcagg
     3361 ttgtggcgta aagaggcaac gcaatggcag gaaccccggt gaacataccc gatcttgaag
     3421 atctctatcg cgatctgcgg cccttcggtt tcgcgattgc ctaccgcatg ctcggcagcg
     3481 tcagcgaagc cgaggacgtg gtgcaggagg cattcgtgcg gctgagtcgc acaactgatg
     3541 agaagatcga tagtccgaag gcctacctcg cgaccgtcac cacgcgcctg gcaatcgatg
     3601 cactccgctc ggctcgcacc caacgcgaga cctacttcgg tccctggtta ccagaaccac
     3661 tggtccatga gtacacggca gacgtcgccg aggccgctga aaccgccgag tcgctgacca
     3721 tggcattctt gatcatactt gagaagctct ctcccctcga acgagcagtg ttcttgatgc
     3781 gagaagtgtt cgcttatgag tacgacgaga tcgctcggat cgtcagcaag agtcaagcga
     3841 actgcagaca ggtcgctagg cgagcccgaa accggatcga aaacgggaag cctcgctttg
     3901 aagtctctcg cgagaaacac accacactgg cccaacgatt tttcgcagct tgccaggacg
     3961 gcgacgtcga cgggctcgtc acattgctcg ccagcgacgc cgccttctac ggcgacggcg
     4021 gcaacaaggg caccggcgtg ccacatccgg tttacggccg cgataacgtc gtgaagctcc
     4081 tgctcgggtt attccgcgtt gcccaccggc tcgacgtgca gctgctggcc gtcgaggtca
     4141 acggccagcc gggtgccaag tgcctcgact ccgctggccg tctgatcaat gtgctcagcc
     4201 tggacatcgc ggacggcaca gtccacgtcg tgcgctcgat cgtgaatccc gagaaactcc
     4261 ggcacctcgg gtccctgtcg ccgatcggcc gccggaccca gaaggcagac gcgcggtaga
     4321 gcgcaccgcg cccggatcag ccctgtccag gctgcggctg cccctgtggc ggcaggacct
     4381 gcttcggcga agcgggctgt gccgccggct caccagcagt gacctcgccc gctatgggtg
     4441 ccccgtggat cgaggcgcga atctgttcca accgggaacg gcccgccatg tccagcgagg
     4501 actgctgcac ctccagcatg cgaccttgca cagagttctg cgcgagttcc gcagccccga
     4561 gggcattggc gtagcggcgc tcgatcttgt cccgcacctc gtcgagggag ggcgtgttgc
     4621 ccggcgcagc cagctcggtc atggattgca gcgaagcgga aacctgctcc tgcatcttcg
     4681 cctgctccag ctgggagagc agcttcgtcc gttccgcaat cttctgctgc aacaccatcg
     4741 cgttgcgctc gacagcctgt ttggcctggc ctgcagcctg cagcgactgg tcgtgcaacg
     4801 tcttgaggtc ctctacggat tgttccgcgg tcaccagctg cgtcgcgaag gactccgctg
     4861 cctgctcgta ctgctgtgcc ttcgtctgat cacctagacc gcgagcctcg tcagcgagca
     4921 cgagcgcttg ccgagctgac gattgcaact tctcgatctc gccgagctgc cggttgagct
     4981 tgacctccaa ctggcgctgg ttgccgatga cagcggcggc ctgctgggac agtgcctggt
     5041 gctgccgctg cgcttcctcg atggcctgct ggatctgcac cttgggatcg gcgtactcgt
     5101 cgatcttgga cgagaacgac gccatgaggt acttccaggc cttcacaaac gggttggcca
     5161 tctcctgcgc tgcctctctt cgtgaccaat cgggctagct ccacgcaccc gatcacgacc
     5221 cgcccgacag gccaactcga gccagtcagt agagccgcgt gctagctcca tggtgtcagg
     5281 tgcttggcgg cgcttccacc gaccccaggg agaaccaggg gttacccctg acctcagcct
     5341 ccaccggtcc agctcaggca gctaccagct cagccgagag agtatcgggc atctcgggca
     5401 ggtacaccgg accgagatcg tcagccaccc gccgcagcag ctcatccagc ggcagatcaa
     5461 gtgcgtcgca gatcgaggcg aggagttcgc tggagggctc cttgcggccc cgctcgacct
     5521 cagagagata ccccaggctc acccgggcga cccgggacac ctcgcgcagc gtgcggcact
     5581 gcgaggtccg cgtccggcgc aaccggccgc cgatggcctc ccgcagcagc gtcattgcgt
     5641 ttccttccga gtgtgggcca aagggtaatc caatcagtct gcttgccctc taccgtactc
     5701 accagccggc tggccgggcg tccgccgtgg gcgaacggca ccgttaggag atcagaccat
     5761 ggtcaggaca gcgcgatggc cctgcgacca gaggcgcgca ggcgcagcgc acgcaccacg
     5821 tagtcgatac cggtcacgag ggtgagtacc acagcgatac ccatgatcac ccaacgcact
     5881 ggttgtgccg ctaacggaag tggtagcacg taaagcacga tcgctaccgc ctgggtaaaa
     5941 gccttcacct tcccgccacg gctggccggg atcaccccgt atcgcagaac ccacaatcgc
     6001 agcgctgtca cggccaactc ccgagccgcg atcaacagag tgacccacca gctaagctcg
     6061 cccagcacac tcaggccaac cagtgccgac ccgatcagcg ccttgtcggc aatcggatcg
     6121 gcgatcgtgc cgaagttggt tacctgtccg cgccgccgag ccagatcacc gtcgaaccgg
     6181 tcggtgagcg aggcgacgcc gagaatcacc gctgcggtca cccgccatgc cggatcggtg
     6241 ccgtcccgga cgaacaaggc aatgacgaat accggcacca gaaccaaccg cgacatggtc
     6301 agcccgttgg ccaggttcca cagcgggacc ctggtcggcg gtggcggcgg gctcaccgcc
     6361 cgccgccggc cggggcggtc agctccatcg gctcgacgat cagatcgatg cccttggcgg
     6421 cgatcacccg gcagcgcacc agatcaccga ccgccagcga gtgcgcttcc gggccaacca
     6481 gcacacactc accgtccacc tcgggggcct ggtgctcagc gcgcccgcaa ggctcctcgg
     6541 cagtgtcttc aaccagcacg tccacgctct cgccgacccg atcttcggct cgttgagcgg
     6601 tgagctgctc gaccagctcg ctcacccgag cgacgcgctc ggcgacggtg tccgcgtcgt
     6661 gctgaccggg cagaccagcg gcctcggtgc cgtcctcgtc ggagtaaccg aacacgccta
     6721 cggcgtccag ccgtgcctcg gtgagaaatc gctccagctc cgccaggtcg acctcggtct
     6781 ctcccggaaa cccgacgatc acattgctgc gcacccccgc gagaggcgcg tgctggcgga
     6841 tctgatccag cagggccagg aaggactggc gggagccgaa ccggcgcatc cgccggagta
     6901 ccggctcgct ggcatgctgg aatgacaggt cgaaatagct ggccaccccc gcggtggcag
     6961 tgatcgtggt caccagcgag ggacgggtct cggccggctg caggtaagaa accctggttc
     7021 gcagaacgcc cggcacgccc gcgagccgcc gcagcagctc ctccagagcg cccgagcggc
     7081 cgaggtcctt gccgtaggac gtggagttct cactgaccag aatcagctcg cgcactcccg
     7141 tcccggccaa ccagatcgcc tcggccagca catcgtcgag cgagcgggag a
//
LOCUS       DASVXZ010000113         1783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1178093, whole genome shotgun sequence.
ACCESSION   DASVXZ010000113 DASVXZ010000000
VERSION     DASVXZ010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178093"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1554)
                     /locus_tag="VF788_02230"
     CDS             complement(<1..1554)
                     /locus_tag="VF788_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005459693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEX8933017.1"
                     /translation="MSEADVYRLRRIESVTDAALAHLDVEGLLTELLDRVRELLQVDT
                     ATVLLLDASCQELVATAAKGIEATVRQGIRVPMGKGFAGRVASEMRPVVIENVDHTNV
                     LYSLLLEHGICSLLGVPMLSSGTVIGVLHVGTFAPRRFTDEDIRLLQIAAERIALATQ
                     TRRAEVERAAAAVFQRSLLPGQLPVVPGLELAARYVPAEDGGVGGDWYDVFTLPSGRL
                     CIVIGDVVGRGLVAADVMGRMRNALRAYAMLGGDPAEVLSRLDQHVQHFEPEMMATVL
                     LTMFEPSFERLYLSSAGHPPPVLALPDQLTALLEVPSDHPVGVPGGLRRRTTTVNLPP
                     GALLCFYTDGLVESPSSSLDVGLERLCESVQAGPVDSLCRQVMARLVGDDVPGDDIAV
                     LAVRRQDSGDVAPLDLVVPALPWSLRDIRLAVRRWLAAVGAAPRAVADLLVAVGEAST
                     NAVEHAYGPGGGTVRVQLELQLPYVLATVRDTGRWRLPRNEDRGRGTLFMRDCSDDLR
                     IDHGPTGTNV"
BASE COUNT          376 a          599 c          521 g          287 t
ORIGIN      
        1 cacgttggtt ccggtagggc cgtggtcaat acgtagatcg tcactacagt cgcgcataaa
       61 cagggtccct cgtcctcggt cttcattgcg gggcaggcgc caacggccgg tatcgcggac
      121 ggtggcaagt acgtagggca gttgcagctc caactgcacc cgcacagtgc cgccgccagg
      181 tccgtaagcg tgctcgacgg cattggtaga tgcctctccg acagcaacca acagatcagc
      241 gaccgcgcgc ggcgcggcac caacagccgc cagccaccgg cgcaccgcaa gccggatgtc
      301 ccgcaacgac cacggcaacg ccggcaccac caggtctaac ggagcaacgt caccgctgtc
      361 ctggcgtcgc accgcaagca cagcgatatc gtcaccaggg acatcatcac ccacgagccg
      421 ggccatgacc tgtctacaaa gggagtcgac cgggccggcc tgcaccgact cgcacaggcg
      481 ctcaaggccg acgtcaagcg agctgctggg actctccacc aaaccgtcgg tgtaaaagca
      541 gagaagtgcc cctggcggca ggttgacggt ggtcgtacgg cgtcgcaacc caccaggcac
      601 acctactgga tggtcgctcg gcacctcgag aagcgccgtc agttgatcgg ggagtgcaag
      661 caccggtgga ggatgacccg ccgaagacag gtacaagcgc tcaaacgatg gttcgaacat
      721 cgttaacagc accgtggcca tcatctcagg ctcgaagtgc tgcacatgct ggtcgagcct
      781 gctcagcact tcggcaggat caccaccgag catcgcatag gcacgcagtg cgttgcgcat
      841 ccggcccatc acatcggccg cgaccaggcc acgcccaacc acatctccga tcacgatgca
      901 caatctgccg gagggaagag tgaagacgtc gtaccagtcg ccaccgaccc cgccatcctc
      961 agccggtacg tagcgggcgg ccaactcaag gcccggcacc accggcagct gccccgggag
     1021 caggctgcgc tgaaataccg ccgcagcagc ccgttcgact tcggcacgcc gcgtttgggt
     1081 ggccagcgcg atccgttcag cagcgatctg gagcagcctg atgtcctcat cggtgaaccg
     1141 gcggggggcg aacgtgccga catggagaac gccgatcacc gtcccactgc tcagcatcgg
     1201 caccccgagt aaggagcaga ttccgtgctc cagaagaagc gaataaagca cgttcgtgtg
     1261 atcaacattt tcgatcacca ctggccgcat ctccgacgcg acgcgaccgg cgaaaccctt
     1321 gcccataggg acgcgaatcc cctgacgtac tgtcgcttcg attcccttgg cagcggtagc
     1381 gacaagctcc tggcaggagg cgtcgagtag cagcacggta gctgtgtcga cctggaggag
     1441 ctctcgcacc cggtcgagca gctcggtcag cagtccctcg acgtccaggt gagcgagtgc
     1501 cgcgtcggtt acggactcaa tgcgacgcaa ccggtaaacg tcagcttccg acacctcgct
     1561 ctgctcacca ggcgttgcca ccatccgagc atagcccacg ttcgagtgaa acagcttccg
     1621 tctatctatg tcaacttagc tccgaatagt gaggtatccc gcacaatcgg tgagacactg
     1681 ttgctgttct cgtcgcatct ctatcagata ttgtgccgcg ccatacggcc tgcgccagca
     1741 cttcttgatt cagccgccga cgccggggag cccgggtatc aga
//
LOCUS       DASVXZ010000114         2118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_460926, whole genome shotgun sequence.
ACCESSION   DASVXZ010000114 DASVXZ010000000
VERSION     DASVXZ010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460926"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..>2118
                     /locus_tag="VF788_02235"
     CDS             17..>2118
                     /locus_tag="VF788_02235"
                     /inference="COORDINATES: protein motif:HMM:NF020243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8933018.1"
                     /translation="MTAGYYENPAANADVFTADGWFNTGDRGFLRDGRLTLTGRAKDV
                     IIINGANYASHEIESVVEELPFIDRSYTAACAVRDPAAGTDQLAVFFHLLPGTDEREA
                     LRRIRSTILREIGVNPDHLVPVDRADIPKTGLGKIQRSQLGERYGRKLSGSAGSAAAV
                     EKTTELPAWFYRPEWKPSTIGRFSGQESGPVLIFMDRLGLGQAFSAMLRGRGQACVSV
                     HQKAGAAFERIDTDTFVIDPGDGEHYHRLVRAITDQELRPAHIVHLSDYAVHIQFSNT
                     QMIRARCRTGAGWLLHLLAAMAAVGWDSWVRLRVVGAHTQRIGETDRVTFTRALVRNL
                     LKTGAQEVPWLRCQHLDVEIDEPQRNAQHLLDEVDGTTADPDVAYRSGRRLVPRLVPV
                     HHAGETVADAQFTAAGLYVLAGGLGGIGLELTRHLLTQYDAKVLLLGRRHLDESATKR
                     LRALGANVRYAVADVTNQHRVRECIEQAEEHWGTRVAGVIHLAGYVAQQSLMECSVDQ
                     LLAVVEPKICGAWSLHQVLTDRPGTPLILFSSATGYFGAVMLGPYAAANAALDAFADH
                     LHAESTQSRCQSIGWSMWRETGMTRGMALTGQIPLLGYRMMAPHDALMSLSVAAADSH
                     PFLLVGLDPHGRAARQHMAGPPQLTRTIVARINDPDSVDHIAAVLAPIRLLDRYGTPT
                     SCQVVAAAHVPAGPMQPQS"
BASE COUNT          386 a          660 c          665 g          407 t
ORIGIN      
        1 tgtccagggt gcggtggtga ccgcgggata ctacgagaat cctgcggcca acgctgacgt
       61 cttcaccgcg gatggctggt tcaacaccgg cgaccgcgga tttttgagag atgggcggtt
      121 gacgctcacc ggccgagcca aagacgtcat cattatcaac ggtgcgaact acgcaagcca
      181 tgagatcgag tcggtggtgg aggagctgcc cttcatcgac cggtcctata ccgctgcctg
      241 cgcagtacgt gatccggccg ccgggacgga ccagctcgcc gtcttcttcc atctgctacc
      301 tggaacggac gaacgagagg cgctacgccg gatacgttcg acgatcctcc gggagatcgg
      361 agtgaatccc gatcatctgg ttccggtcga tcgcgcggac atacccaaga ctggcctggg
      421 caagatccag cgtagtcaac tcggtgaaag atacggacga aagctatcag gctctgctgg
      481 gtccgcggcg gctgtcgaga agaccactga actacccgcc tggttctacc gtccggagtg
      541 gaagccgtcc acgataggcc gattttcggg ccaggagtcc ggtccggtgc tgattttcat
      601 ggaccgtctc ggtctcggtc aggcatttag cgccatgctg cgcgggcgcg gccaggcgtg
      661 tgtgtcagtg catcagaagg cgggcgcggc gttcgaacgc attgataccg acacgtttgt
      721 catcgatccc ggtgacggtg agcattacca ccgactggtg cgagcgatca ccgatcaaga
      781 attgcgccct gcgcatatag tccacctatc agattatgct gttcacattc agttctcgaa
      841 cacgcagatg atccgggcca ggtgccgaac gggcgccggc tggttgcttc acctgctggc
      901 ggccatggct gccgtcgggt gggattcatg ggttcgcctg cgggtagtag gcgcccacac
      961 ccaacgcatc ggggaaactg atcgtgtcac gttcacgcgg gcgcttgtgc gtaatcttct
     1021 gaagacaggc gcgcaagagg ttccgtggct gcgctgccag catctcgatg tggagatcga
     1081 cgagccgcag cgcaatgcac agcaccttct cgacgaggtc gacggcacta ctgccgatcc
     1141 ggacgttgcc taccggtccg gccgcaggct ggtgccgcgg ctggtcccgg tgcaccatgc
     1201 cggtgagact gtcgctgatg cgcagttcac cgccgctggt ctctacgtgc tggccggagg
     1261 tttgggcggt atcggtctgg aactcacccg ccatctactc acccaatatg acgcgaaggt
     1321 cctgctgctg ggccggcgcc acctggacga gtcggccacg aagagactcc gggcactagg
     1381 cgccaacgtc cgatacgccg ttgcagacgt caccaaccag caccgcgtgc gggaatgcat
     1441 agagcaggcc gaggaacact ggggaacaag ggtggccggc gtgatccacc ttgccggtta
     1501 tgtcgcgcag caatcactca tggaatgctc ggtcgatcaa ctcctcgcgg tggtggagcc
     1561 gaaaatctgc ggggcgtgga gtctgcatca agtactcacg gatcgcccgg gaactccact
     1621 gatcctgttc tcttccgcca cgggatactt cggtgccgtc atgctgggtc cgtacgcggc
     1681 agccaatgcc gccctggacg cgttcgccga tcacctgcac gccgaatcca cccaatctcg
     1741 ctgccagagc attggctgga gcatgtggcg cgaaacgggc atgacccggg ggatggcgct
     1801 tactgggcag atcccgctac tgggttaccg tatgatggcg ccacatgatg cgctgatgtc
     1861 gctgtccgtc gccgctgctg attcccatcc attcctcctg gtcggtctcg acccacacgg
     1921 acgggcggcc cggcagcaca tggccggtcc accacagttg actcgcacca tcgtggctcg
     1981 tatcaacgat cctgattctg tcgatcacat cgcagctgtg ctggctccga tccgcctgct
     2041 ggaccgatac ggcacgccca catcctgcca ggtggtggcg gctgcgcacg tgccagcggg
     2101 gccaatgcag ccgcagtc
//
LOCUS       DASVXZ010000115         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1178216, whole genome shotgun sequence.
ACCESSION   DASVXZ010000115 DASVXZ010000000
VERSION     DASVXZ010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178216"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            340..1473
                     /gene="rho"
                     /locus_tag="VF788_02240"
                     /pseudo
     CDS             340..1473
                     /gene="rho"
                     /locus_tag="VF788_02240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155695.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
BASE COUNT          351 a          630 c          526 g          270 t
ORIGIN      
        1 taggcacgtt aaccaggccg acggggaacg tggttgcgcg ccgatcatcg agtggggtag
       61 cttcggtggc gtctccttct tgtggatgca ggcagatgac gtgcccccgc aagatctctg
      121 agatttcctt cctcccgcag ggcgtgcttc gtggtgaagc cgttcctggc gtgaacggga
      181 ttccctttgc ggcgtgcgcc ggcgtgtccc ggcccagtca ccgcaccccc cattgatcga
      241 tgagtccagg aagaaacccc tatgtatgac aacgatttcc ccagccaacc tgccgacaac
      301 ggcaggaccc ataagtcgca tgaggacggt tccccgcggc ccgtcaccgg gatcctcgac
      361 atcgtggaca accgcgcctt cgttcgcacc gacagctacc tgcccggacc ccgcgacgcc
      421 ccagtcccgc tgggactggt ccgcgaatac gggctgcgcc gcggtgacac ggtcaccggc
      481 acagcccgcc cggccggcag ggacgaaaga cccgagcccc tcgtccaggt cgacaccatc
      541 aacggacaac acccgcgtca cgccatgtcc cgggctgtgt tctccgagct ggtcccgctc
      601 tacccgaacg agcggatgcg actggagacc gaaccccacg ccctgaccac gcgggtgacc
      661 gatctcctca tgccagtcgg caagggacag cgggccttga tcgtcgcacc accgaaggcc
      721 ggcaagacct ccgtgctgca ggccctcgcg cacggcatag ccaaaaacca cccggaatgc
      781 cacctcatgc tcgtcctggt cggcgaacgc ccggaagaag tcaccgacct ggcacgcgcc
      841 gtgcccggcg aagtcatcgc tgccacattc gaccacccgc cccacgagca caccgcgctc
      901 gccgagctgg ccatcgaacg cgccaaacgc ctggtcgagg tggggcgaga cgtggtggtg
      961 atgctggact cgctgacccg gctaggccgc gcctacaacc tggccgcgcc agcgtcggga
     1021 cggatcctgt ccggcggggt ggactccacc gccctcgtgc cgccgaaacg gttcctcggc
     1081 gcggcccgca atatcgagaa cggcggttca ttgaccatat tcgccacagc actagtggac
     1141 accggctcgg tcggcgacac actgatcttc gaggaataca aaggaaccag caacgccgaa
     1201 ctaagactcg accgcaagat cgcaagcaaa cgtgtctacc ctgccgtcga catagcccag
     1261 tccagcacac gcaaagaaga gctacttctg accaccaaag aaatggcagc cacccgcgcc
     1321 ctgcgccggg ccctcgacgg ccgggacagc caacaggcca tcgacatgct cctcgacggc
     1381 ctccgcaaga cccacaccaa taccgagttc ctcacccagc tcaccaggac caccccacac
     1441 aacggcagcg gttcagggac tgccggccgg tgaccgcgcc gcatgtgagt gttactggat
     1501 tcttgttgac gggccgcgga ggtcgaccgg ggcgtaccgc tagcgggcgc ttcacgcgcg
     1561 ggacggccca aggactgtta ttgagaaata cccacggagg ccacttctgc ctccggatac
     1621 ggctgcacca tgtgatcaag tggctgacgg tgtcggtcgg ctggtgctca gcgctggtgc
     1681 tgttatcttc ccggtgacga tccaaccagg gcttggcaag accgagctgg agggcgcaaa
     1741 actcgtgacc gaacccacac cctggatcga ggatcgc
//
LOCUS       DASVXZ010000116         2656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_461006, whole genome shotgun sequence.
ACCESSION   DASVXZ010000116 DASVXZ010000000
VERSION     DASVXZ010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461006"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..1783)
                     /locus_tag="VF788_02245"
     CDS             complement(140..1783)
                     /locus_tag="VF788_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HEX8933019.1"
                     /translation="MIPATPLTAALRNIWRGLTSMRTALMLLFLLALGALPGALLPQY
                     SLNPERVRIYQAQHPKLAPVLDRLGFFEVFASPWFAAIYLLLFVSLVGCVVPRSIEYA
                     RQLRRAPVATPRNLSRLPHHARSESHAGAEEIIAAARRRLRGWRIAERQEPGGARTLS
                     AERGYLREAGNLVFHFALLGLLVSFAIGKLVGYQGQVIVLADGSQFCNSGPLAYDSFQ
                     PGRLVDGTALTPFCLQANAFTPTYLPTGQAEEFRAAISYQGPDDLATGSWHPYQLRVN
                     DPLRLGGTRVYLVGHGYAPQFTVTFPDGQQRRAVVQWRPVEQATFLSEGTTKFDPPGV
                     TDDATRRTRQLAITGLFAPTAAFRGSLLSSAFPDLLDPAVAIDVLKGDLGNNSGRGQS
                     IFSIDQSMVDSGRLKQVVRGNLRPGEQLTLPDRTVVHFDGVTRFVSLQVSYDPTQLWV
                     LGFAMLVLGGLALSLTVKRRRFWVRVADHQTLGAGPTGTVVELGGLARTEAAGYGEEF
                     EQIAADLLPSRQGQPPVPAAILKEGGRSDADQPGSGVLQ"
     gene            complement(1784..2554)
                     /locus_tag="VF788_02250"
     CDS             complement(1784..2554)
                     /locus_tag="VF788_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005438216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEX8933020.1"
                     /translation="MGLTEFAVSGPLVLAAGLAVLAGAVSFASPCVVPLVPGYLAYLT
                     GLVGVDGNEGEGADHSRGRVLGAVALFVLGFSAVFTASVVTVLGIADRLFINAVVLQR
                     VGGVITIAMGLVFIGLIPALQRDLRIHPHSGLGPRHLLGAPLLGAVFGLGWTPCLGPT
                     LAGVTALAVSTPGGGLARGVLLVFAYCLGLGMPFLLLAWGARRAVRAVAWLRAHVRGV
                     QLAGGALLVVVGMLLVTGLWAELIAVLREPVAGFETPI"
BASE COUNT          505 a          921 c          886 g          344 t
ORIGIN      
        1 agccagcgtc accactgacc cgtcccctac agctgtgtga ccggctgcga ctgtgaccgg
       61 cgcccgaccc gtcgcgtact cgacggcatg caggaccatc gcgaggaggt agaggaccag
      121 cgcggtgcca taagcgaggt cactgtagga cgccagaacc gggttgatcg gcatcgctgc
      181 gccccccttc cttcaaaatc gcggcaggca ctggtggctg cccttggcgc gaaggcaaca
      241 gatcagccgc gatctgctcg aattcctcgc cgtagccggc tgcctcggta cgggccaacc
      301 cacccagctc aaccacggta ccggtcggtc ccgcgcccaa cgtctggtgg tctgcgacgc
      361 gtacccagaa ccggcgacgc ttcaccgtga gggacaacgc caggccaccg agcaccagca
      421 tcgcgaaacc gagcacccag agctgcgtcg ggtcgtagga gacctgcagc gagacgaacc
      481 gggtcactcc gtcgaagtgc actacggtgc gatcgggcag ggtgagctgc tcaccggggc
      541 gcaggttgcc ccgcaccacc tgcttgagcc gcccagagtc caccatggac tgatcgatcg
      601 agaagatcga ctgaccccga ccggagttat ttcccaagtc tcccttgagc acgtcgatcg
      661 cgacggccgg gtcgagcagg tcggggaatg cggaggacag cagcgaaccg cggaacgctg
      721 cggtcggtgc gaacaacccg gtgatcgcga gctggcgggt gcgcctggtg gcgtcgtcgg
      781 tgaccccggg cggatcgaat ttggtcgtgc cctcagacag aaaggtggcc tgctccaccg
      841 gccgccattg caccacggcg cggcgctgct gcccgtccgg aaaggtgacg gtgaattgcg
      901 gcgcgtaacc gtggccgacc aggtagaccc gggtgccgcc gagtcgaagc ggatcgttga
      961 ccctcagctg gtagggatgc caggagccgg tggcaagatc gtcagggccc tggtatgaga
     1021 tggcggcgcg gaactcctcg gcctgcccgg ttggcaggta ggtcggtgtg aacgcattgg
     1081 cttgcagaca gaacggggtc agcgcggtgc cgtcgactaa ccggccgggc tggaaggagt
     1141 cgtaggccag cgggccggag ttacagaact gcgaaccatc ggccagcacg atgacctggc
     1201 cctggtatcc gaccagcttg ccgatcgcaa aggacaccag cagcccaagc agggcgaagt
     1261 ggaagacgag attgccggct tcgcgcaggt agcctcgctc ggcggacagc gtccgggcgc
     1321 ccccaggctc ctgccgctcg gcgattcgcc aacctcgcaa ccgtcgccgg gcggcggcaa
     1381 tgatctcctc cgcgccagca tgggactcgc tgcgcgcgtg gtgcggcagc cggctcagat
     1441 tgcggggggt ggctactggg gctcggcgca gttgccgggc gtattcgatg ctgcgcggca
     1501 ctacgcagcc gaccagcgat acgaacagca gcaggtagat cgccgcgaac caggggctgg
     1561 cgaacacctc gaagaaaccc agccggtcga gcaccggggc cagcttcggg tgctgcgcct
     1621 ggtatatccg gacccgctcg gggttcagcg agtactgcgg cagcagggcc ccaggcagtg
     1681 cccccagcgc cagcaggaac aacagcatca gcgcggttcg catactggtc agtccacgcc
     1741 agatgttgcg cagcgcggcc gtgagcggag tcgcggggat catctagatc ggcgtctcga
     1801 acccggcgac cggctcgcgc aggacggcga tgagctccgc ccagagcccg gtgaccagca
     1861 gcatccccac cacgacgagc aaagcgcccc cggccagctg gaccccccgc acgtgggcgc
     1921 gcagccaggc caccgcgcgc acggcccgcc gggcgcccca ggcaaggagc aggaatggca
     1981 ttcccaaccc gaggcagtag gcgaacacga gcagcacccc acgcgcgaga cctccgccgg
     2041 gagtgctcac ggccagtgcc gtcaccccgg ccagagtcgg cccgagacac ggcgtccagc
     2101 ccagcccgaa caccgcgccc agcagcgggg cgccgagcag gtgtcgaggc cccagtccgg
     2161 agtggggatg gatccgcaga tcgcgctgca gcgccggaat caacccgatg aacaccaggc
     2221 ccatcgcaat ggtgatcaca ccgcccacgc gctgcaagac gaccgcgttg atgaacaacc
     2281 ggtccgcgat gcccagtaca gtcaccacgc tcgcggtgaa cacggcggag aagcccagca
     2341 cgaacagcgc cacagctccc agcacccggc cccggctgtg gtcggcgccc tccccctcgt
     2401 tgccgtcaac accgaccagc ccggtgaggt aggcaaggta tcccggcacc agcgggacca
     2461 cgcacggtga ggcgaagctg accgcaccag cgagcaccgc caacccagcc gccagcacca
     2521 gcggcccaga gacggcgaat tccgtgagcc ccacatcgct cagcgtaggt cgcggtagct
     2581 cgtcatctac caccaacccc ggaaccaggc actttcagcg gttagccact ttggctgcac
     2641 ggtgcgctgg ggtgta
//
LOCUS       DASVXZ010000117         3091 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_192293, whole genome shotgun sequence.
ACCESSION   DASVXZ010000117 DASVXZ010000000
VERSION     DASVXZ010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3091
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192293"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(320..2488)
                     /locus_tag="VF788_02255"
     CDS             complement(320..2488)
                     /locus_tag="VF788_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005465999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HEX8933021.1"
                     /translation="MTGSIRWDADADADGVVTLTLDDPGRSANTINDRYVASMGETLD
                     RLEAERDSITGVIVTSAKKTFFAGADLNTLRNVTPENAREFAAYIALVKGQLRRLEKL
                     GKPVVAAINGAALGGGLELALACHHRIALDTPASKIGFPEVTLGILPGLGGVVRSVRM
                     LGLMVALTELLTRGQQLRPAQAKEIGIVDEVARTPEEMLEKAREWIAAHPKAQQPWDV
                     RGYKIPGGTPSTPALAQMLPAFPATLRKQLKGAPMPAPHHILCAAVESTQVDVETALA
                     IEGRYFMDLATGQVAKNMIKAFFFDMQHINKGGSRPDGYPKRTFRKVGVLGAGMMGAG
                     IAYSCARAGMDVVLKDVDLASAEKGKGYSERLLDKAVSRGRSTTEQRDELLARITPVA
                     DAADLKGCDLVVEAVFEDPTLKKRVFAEVLDVVDPDALLCSNTSTLPITDLASGVARP
                     ADFLGLHFFSPVDKMPLVEIIRGKQTSDAALAAAIDVVQQIRKTPIVVNDSRGFFTSR
                     VIGTFINEGVAMLAEGAAPASVEQATLQAGYPAPVLQLVDELTLTLMRKIREETRRGV
                     EAAGGAWTPHPADAIVDVMVLECARPGRSGGAGFYEYENGRRIRLWPGLAEQFGPLRP
                     DAIPFEDMKERMLFVEALEAVRCLDEGVITSIPDANIGSIMGIGFPPWTGGVVQFING
                     YAGGLTGFVARAKELADRYGDRFIPPPSLIARADAGESID"
     gene            complement(2530..>3091)
                     /locus_tag="VF788_02260"
     CDS             complement(2530..>3091)
                     /locus_tag="VF788_02260"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804368.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX8933022.1"
                     /translation="FTGMGAHVLQDKGGITVDETALLAYPAFDHIEHVHHAGNSSGIV
                     DGAALVMIGSEQVGRDLGLTPRARIVAGAVTGEEPTIMLTGPAPATRKALAKAGMTID
                     QIDLIEVNEAFAAVVLRFMREMDVPHDKLNVNGGAIALGHHLGATGAMILGTLIDELE
                     RRDLRYGLATLCVGGGMGIATIIERL"
BASE COUNT          507 a         1062 c          999 g          523 t
ORIGIN      
        1 gtagtcaaca agtagcaacc tattggttgc tatattatgg caaccaatag gttgcgtcaa
       61 tctctcgggt tgacctgcga tgtcaacggg gtccgccgac ctacctggat gatcggggca
      121 ccggcggaac cgcaagtggc ccggcctgaa ccaggccctc gccccgtccg caccggagaa
      181 accctcgtcg tgccgaaact cgaccggctc ggtgcccgac gcccgcgcca ttggcgatga
      241 cctcgccgcg cgccggcggg caggtctacg accccaccga ccccatgggc aagatgttct
      301 tcaacaccct ggcatcgatc tagtcgattg actccccggc gtcggctctg gcgatcagcg
      361 aggggggtgg gatgaaccgg tcgccgtagc ggtcggcgag ttctttggcg cgggcaacga
      421 agccggtgag gccgccggcg tagccgttga tgaactgcac gacgccgccg gtccacgggg
      481 ggaaaccgat acccatgatc gagccgatgt tggcgtccgg tatcgaggtg atcacgccct
      541 cgtcgaggca gcgcacggcc tccagcgcct cgacgaacag catccgctcc ttcatgtcct
      601 cgaacgggat cgcatccggg cgcaatgggc cgaactgctc agccaaacca ggccacaacc
      661 gaatacgccg gccgttttcg tactcgtaga accccgcacc acccgaacgc ccgggacggg
      721 cgcactccag caccatcaca tcgacgatcg cgtcggccgg gtgcggggtc catgcgccgc
      781 ccgccgcctc cacaccgcgg cgggtctcct cacggatctt gcgcatcagg gtcagcgtca
      841 gctcgtccac cagctgcagt accggggccg ggtagccggc ctgcaaggtg gcctgctcga
      901 ccgacgccgg cgccgcgccc tcggccagca tggcgacacc ctcgttgatg aaggtgccga
      961 taacccggct ggtgaaaaag ccacggctgt cgttgacgac gatcggagtc ttgcggatct
     1021 gctgcacgac gtcgatagcc gcggccagtg cggcgtccga ggtctgcttg ccgcggatga
     1081 tctccacgag cggcatcttg tccaccgggg agaagaagtg caggccgagg aaatctgccg
     1141 ggcgcgccac tccagaggcg aggtcggtga tcggcagggt ggaggtgttc gagcacagca
     1201 gcgcatcggg atcgaccacg tcgaggacct cggcgaagac ccttttcttc agggtggggt
     1261 cctcgaacac cgcttcgacc acgaggtcac aacctttgag gtcggccgcg tctgcgaccg
     1321 gagtgatccg ggccagcagc tcatcgcgtt gctcggtggt ggatcggccc cgggacacgg
     1381 ccttgtccag cagtctctcc gagtaaccct tgcccttctc ggcgctggcc aagtcgacgt
     1441 ccttgagcac tacgtccatg cccgcgcggg cacaggaata ggcgatgccg gcgcccatca
     1501 tcccggcgcc gagtaccccg accttgcgga aggtgcgctt cgggtaacca tcagggcggc
     1561 tgccgccctt gttgatgtgt tgcatgtcga agaagaacgc tttgatcatg ttcttggcaa
     1621 cctggccggt ggcgaggtcc atgaaatagc ggccttcgat ggccagcgcg gtctccacgt
     1681 ccacctgcgt gctctctacg gccgcgcaga ggatgtggtg cggggccggc atcggggcgc
     1741 ccttgagctg cttgcgcaag gtggcaggaa atgcggggag catctgagcc aacgcgggag
     1801 tggacggcgt gccaccgggg atcttgtaac cccggacgtc ccagggttgc tgcgccttcg
     1861 ggtgcgccgc gatccactcg cgagccttct ccagcatctc ctccggtgtc cgggcgacct
     1921 cgtcgacgat gccgatctcc ttggcctgcg ctggacggag ctgctggccc cttgtcagca
     1981 gctccgtcag cgcgaccatc aggccgagca tccgcacgga gcggaccacc ccgccaagac
     2041 ccggcaggat cccgagagtc acctcaggaa agccgatctt gctagccggc gtgtcaaggg
     2101 cgatccggtg gtgacaggcc agcgcgagct ccaagccacc gccgagcgca gcgccgttga
     2161 tcgcggcgac caccggcttt cccagcttct ccaaccgccg cagctgcccc ttgaccagtg
     2221 cgatgtaggc agcgaactcg cgggcgttct ccggtgtgac attccgcaac gtgttcagat
     2281 cagcgccggc gaagaaggtt ttctttgccg aggtcacgat gaccccggta atcgagtccc
     2341 gctccgcctc cagacggtcc agagtctcac ccatcgacgc gacatagcgg tcgttgatgg
     2401 tgttcgcaga gcgccccggg tcgtccaggg tcagcgtcac gacaccgtcg gcgtcagcgt
     2461 cagcgtccca gcgaatgctg ccagtcatct gctctctccc caccactgtg ctgtccccca
     2521 ctgcgctgct cacagccgct cgatgatggt ggcgatgccc atgccgccgc ctacgcacaa
     2581 cgtggccagg ccatagcgca ggtcgcgccg ctcgagctcg tcgatgaggg tgcccaggat
     2641 catcgcgccg gtcgcgccca ggtggtggcc gagcgcgatg gctccgccgt tgacgttgag
     2701 cttgtcgtgc ggcacgtcca tctcgcgcat gaagcgcagc accaccgcgg cgaaggcctc
     2761 gttgacctcg atcaagtcga tctggtcgat ggtcatcccc gccttggcca gcgccttgcg
     2821 ggtggccgga gccgggccgg tcagcatgat cgtcggttcc tcaccggtga ccgcgccggc
     2881 cacgatccgg gcccgcgggg tcagcccgag gtcccgcccg acctgctcgg agccgatcat
     2941 caccagcgcc gcgccgtcga cgatccccga ggagttgccg gcgtggtgca cgtgctcgat
     3001 gtggtcgaac gcggggtagg ccagcagcgc ggtctcgtcg accgtgatcc cgcccttgtc
     3061 ctgcagcacg tgcgcgccca tccccgtgaa g
//
LOCUS       DASVXZ010000118         2369 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1261644, whole genome shotgun sequence.
ACCESSION   DASVXZ010000118 DASVXZ010000000
VERSION     DASVXZ010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1261644"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(270..1838)
                     /locus_tag="VF788_02265"
     CDS             complement(270..1838)
                     /locus_tag="VF788_02265"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX8933023.1"
                     /translation="MGGRSRPSSSTWPAASCTPSIWWRTQTSSSACARSSRPDRGKPQ
                     HSNPRHVTRGRGWCVFRSESAQNPSKRNDHGCPWTKGARREMEPKTTQTDVVVIGGGM
                     AGLTAACYLAQAEADVILFEKAPNLGGRAASQDFDGFRFNRGIHALYTGGATSRVLQE
                     LGITYGHGSPKETFMLQGGELYPFPVTPSQFVHRGLLDAGDKLGLARLFASLATLKPR
                     TVAQVSVEEWLERNIRRPRLRLLMAALARTFVYTSALDLVSAEVFVEKLRRALRHPVH
                     YIDGGWQTLVEALRGAAERAGARIVSGTGVEAVEHSNGRARGVCLRDGSSVGASTIII
                     ATRPQDASKLVDRGAHPSLRRIADSFVPAKLACLDVALSRLPSPRYPVVQDLDSPRFI
                     TAQSLYSRVAPEGGALIYTFKQLDPANPGDQRENERDLEGLLDVAQPGWREVLIKRQY
                     LPRIEAVGALPTATGGGFTGRPGPEVPDIANLYLAGDWIGPEGFLADASTASARQVAR
                     LVLSQTKAGAVLAH"
     gene            complement(1723..>2369)
                     /locus_tag="VF788_02270"
     CDS             complement(1723..>2369)
                     /locus_tag="VF788_02270"
                     /inference="COORDINATES: protein motif:HMM:NF016432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEX8933024.1"
                     /translation="HDVAEDVALAESVSMAMLIVLETLTPLERAVFVLREAFGMPHAE
                     IAEILGRKEEAVRQLARRAREHVRERSTRFETDQATHQQVTERFLEATTGRNLEALMA
                     VLAPGVTLVADGGGRALAPRRPLHGSEEVARFLLAIATESQMARFLRSIGIEPPRNVR
                     ISLAQMNGGPGIVVTSDGRPITAIVLDVAGGVVHTVHLVANPDKLLGVRAIESS"
BASE COUNT          376 a          792 c          779 g          422 t
ORIGIN      
        1 accgaccacc cagttatccg tgcatttgca ggtctttctc cttgccggca gtgggcgcgg
       61 tcggtgcagg cggtattctg gccaccttta ccgatgtcct gtgatcgctc tccgtgtatc
      121 cttctgccgg gacattatcc atgcacctgc ccaccgacta tatctacacc tacaggtaag
      181 tcagcgggag ctgcttgcaa cggcgcaccc cgaggcgggg tcggtcgcga caacggtgcc
      241 cgccggcgcc tccccgcacg ggccaaacgt cagtgcgcca gaacggcacc tgccttcgtc
      301 tgcgatagca cgagtcgcgc cacctgtcga gcgctggccg tgctggcgtc agccaggaag
      361 ccctcggggc cgatccaatc gcctgccagg tagaggttgg ctatgtccgg tacttccggc
      421 cccggccgac cggtgaagcc gccgccggtg gcggtgggta gtgcgccgac ggcctcgatg
      481 cgcggcaggt attggcgctt gatgagcacc tcgcgccacc ccggctgcgc cacgtcgagc
      541 agaccttcca ggtcgcgctc gttctcgcgt tggtcgccgg gattcgccgg atcgagctgc
      601 ttgaaggtgt agattagggc ccctccttcg ggggcgacgc gcgagtagag cgattgggcc
      661 gttatgaacc tggggctatc cagatcctgg accaccgggt aacgcggaga gggcaggcgg
      721 ctcagggcga cgtcgaggca ggcgagtttt gccggtacga agctgtcggc gatcctgcgc
      781 agagatgggt gggctcctcg gtccaccagc tttgaggcgt cctggggcct agtcgcgatg
      841 atgatagtgg aggcacccac cgagctccca tcgcgcaggc acacaccccg cgcacggccg
      901 ttgctatgtt cgaccgcctc gaccccggta ccgctcacga tacgcgctcc cgctcgctct
      961 gctgcaccgc gtagcgcctc caccagagtt tgccagccgc catcgatgta gtgcacgggg
     1021 tgtctgagcg cgcgccgcaa cttctcgacg aacacctccg cgctgacgag gtcgagcgcg
     1081 gaggtgtaga cgaacgtacg cgcgagcgcc gccatcagca agcgcagccg cgggcgccgg
     1141 atgttgcgtt ccagccactc ctctacgctc acctgcgcca cagtgcgcgg tttaagcgtg
     1201 gcgagactag caaacaggcg cgcgagtccg agtttgtcgc ccgcatccag caaacccctg
     1261 tgtacgaact gggagggggt gaccgggaag gggtacagct cacccccctg cagcatgaag
     1321 gtctccttcg gactaccgtg accataggtg atgcccagtt cctgcaggac ccgggaggtc
     1381 gccccgccgg tgtagagggc gtgtatgcca cggttgaagc ggaagccatc gaaatcctgg
     1441 gaggccgcgc ggcctcctag gttcggcgcc ttctcaaaga ggatcacgtc cgcttctgct
     1501 tgggcgaggt agcaggcggc ggtcagtccc gccatcccac cgccgatcac aacgacgtcg
     1561 gtttgcgtag ttttcggttc catctctctg cgtgctcctt tcgtccatgg gcacccgtga
     1621 tcgttacgct tggacgggtt ctgggcgctt tctgacctaa agacgcacca cccccgcccg
     1681 cgcgtgacat ggcgagggtt ggagtgctgt ggcttaccgc ggtcaggacg actcgatcgc
     1741 gcgcacgccg aggagcttgt ctgggttcgc caccagatgg acggtgtgca cgacgccgcc
     1801 ggccacgtcg aggacgatgg ccgtgatcgg cctcccatcc gaagtgacca cgatgccagg
     1861 accgccgttc atctgcgcca ggctgatgcg cacgttgcgc ggtggctcga tcccgatgga
     1921 ccgcaagaac cgggccatct gcgactcggt cgcgatggcg agcaggaagc gggccacctc
     1981 ctccgatccg tggaggggac gccgcggggc gagggcgcga ccgccaccgt cggccacgag
     2041 cgtcactccg ggggccagca ccgccatcaa agcttccagg ttcctgccgg tggtggcttc
     2101 caggaagcgt tcggtcacct gctggtgcgt tgcctggtcg gtctcgaagc gggtgcttcg
     2161 ctcgcggacg tgctcgcggg ctctacgagc gagctggcgt accgcctcct ccttgcggcc
     2221 gaggatctcg gcgatctcgg cgtggggcat cccgaacgcc tcccgcagta cgaacaccgc
     2281 cctctccagc ggagttaggg tctcgagcac tatgagcatc gccatcgaga ccgactcggc
     2341 aagggcgacg tcctccgcaa catcgtggc
//
LOCUS       DASVXZ010000119         2294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1620080, whole genome shotgun sequence.
ACCESSION   DASVXZ010000119 DASVXZ010000000
VERSION     DASVXZ010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620080"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VF788_02275"
     CDS             complement(<1..630)
                     /locus_tag="VF788_02275"
                     /inference="COORDINATES: protein motif:HMM:NF014666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEX8933025.1"
                     /translation="MAILIDEHTRVVVQGITGRIGRFHTEEMINYGTNVVAGVTPGKG
                     GETVLDRPVFNTMKDAVEQSGATASIVFVPPPFAADSLMEAADAGIRFCVCITDGIPM
                     QDMMKVKRYMRRYRMQQKMCLTGPNCAGTISPGRSLLGIMPGHIYLPGRVGLIGRSGT
                     LGYEAASQMKALGIGVSTSVGIGGDPVNGSSFRDHLALFEADPDTDAVVM"
     gene            complement(646..1824)
                     /locus_tag="VF788_02280"
     CDS             complement(646..1824)
                     /locus_tag="VF788_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate--CoA ligase subunit beta"
                     /protein_id="HEX8933026.1"
                     /translation="MDIHEYQAKEILTRFDVPIPRGGLAYSPEQASYRCTEIGGSAWV
                     VKAQIHAGGRGDAGGVKVCHSDRDVQDVANSMFGRRLVTRQSGPRGKLIYRVYVEEAT
                     EIARELYFGIVLDRRIERVVIIASAEGGVEIEELAAAKPEALIRTTIEPAAGFLEFQA
                     REIAFALGLAPELIAQASRVFRRAYRAFRDLDATMLEINPLAVTSKGSLVALDAKMSF
                     DDNALFRHLEISELRDRSQEDARESHAADRGLAYVGLDGNIGCMINGAGLAMATMDMI
                     KLAGGEPANFLDIGGGASPERVLKAFRAVLQDKNVETMLINIFAGINRCDWVAQGIIA
                     AFKELEVKIPVVVRLAGTHVDQGQTMLRESGLPIITADSLAEAAHKAVAVVGSVATSA
                     "
     gene            complement(1836..>2294)
                     /locus_tag="VF788_02285"
     CDS             complement(1836..>2294)
                     /locus_tag="VF788_02285"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HEX8933027.1"
                     /translation="FGVADYAASNRARTVSIGGLNPNYPGDQWHFALSRLIVACRAYG
                     LRPIDGPFGDYSDPDGFRASARRAAALGCEGKWAIHPSQVELANEVFSPPEAEVDRAR
                     RIIDALRQAEAQGKGAASVDGKMIDAASERMAQTVIAMDEAIRAAATSRA"
BASE COUNT          359 a          804 c          738 g          393 t
ORIGIN      
        1 catgaccacc gcgtcggtgt ccgggtcggc ttcgaagagg gccaggtgat cccggaagga
       61 ggacccgttg acgggatcgc cgccgatgcc gaccgaggtc gatacgccga tacccagcgc
      121 cttcatctgg gacgcagcct cgtaacccag ggtgccggag cgcccgatca gcccgacccg
      181 cccgggcagg tagatgtggc cgggcatgat gcccagcagc gaacgcccag gggaaatggt
      241 gccggcgcaa ttcggtccgg tcaggcacat cttctgctgc atccggtacc ggcgcatata
      301 acgcttgacc ttcatcatgt cctgcatcgg gatcccgtca gtgatgcaaa cgcagaaccg
      361 gatcccggcg tccgcggctt ccatcaggga atcggcggcg aagggcggcg gtacgaacac
      421 gatcgaggcg gtcgccccgg actgctccac cgcgtctttc atggtgttga acaccgggcg
      481 gtccagcacg gtctcgccgc ccttacccgg ggtgacgccg gcgaccacat tggtgccgta
      541 gttgatcatc tcctcggtgt ggaagcgccc gatgcgcccg gtgatgccct gcaccaccac
      601 gcgggtgtgc tcgtcgatca ggatcgccat gtcccctctt ctggctcagg cgctggtagc
      661 aacggagccc acgacggcga cggccttatg ggccgcttcc gccaggctgt ccgcggtgat
      721 gatgggcagt ccggattccc gcagcatggt ctggccctga tcgacatggg taccggccag
      781 ccgcaccacc accgggatct tcacctcgag ctccttgaac gcggcgatga tgccctgagc
      841 gacccagtcg caccggttga tgcccgcgaa gatgttgatc agcatggtct cgacgttctt
      901 gtcctgcagc accgcacgga acgccttgag cacccgctcg ggtgatgcgc cgccgccgat
      961 gtcgaggaag ttcgccggct cgccgccggc aagtttgatc atgtccatgg tcgccatcgc
     1021 caggcccgca ccgttgatca tgcagccgat gttgccgtcc aggccgacgt aggccagccc
     1081 gcggtcggcg gcgtggcttt ccctggcgtc ctcctggctg cggtcacgca gctcggagat
     1141 ttccaggtgc cggaacagtg cgttgtcgtc gaaggacatc ttggcatcca gcgcgaccag
     1201 gctgcccttg ctggtcacag ccagcgggtt gatctccagc atggtggcgt ccagatctcg
     1261 gaaagcacgg taagcgcgcc ggaatacccg gctggcttgg gcgatcaact caggtgccag
     1321 gcccagcgcg aaggcgatct cccgggcctg gaattcgaga aaacccgccg cgggctcgat
     1381 tgtcgtccgg atcagcgcct cgggtttggc agccgccagc tcctcgatct ccacgccgcc
     1441 ttcggccgag gcgatgatca ccactcgctc gatgcggcgg tccagcacga tgccgaagta
     1501 cagttcccgg gcgatctcgg tggcctcctc gacgtacacc cggtagatca gcttgccgcg
     1561 cggcccggac tgcctggtga ccagccgccg gccgaacatg ctgttcgcga cgtcctgcac
     1621 gtcgcgatcg gagtggcaga ccttcacgcc gccggcgtca ccgcgacccc cggcgtggat
     1681 ctgggccttc accacccacg ccgacccgcc gatctcggtg caccggtaag acgcctgctc
     1741 ggggctgtag gccaggccgc cgcggggaat gggcacatcg aagcgggtca ggatctcctt
     1801 ggcctggtac tcgtgaatgt ccacacccgc tcctttcagg cccggctcgt cgcggcggcc
     1861 cggatcgcct catccatcgc gatcacggtc tgcgccatcc gctccgatgc ggcgtcgatc
     1921 atcttgccat cgaccgacgc cgcacccttg ccttgcgcct cggcctgtcg cagcgcatca
     1981 atgatgcgcc gggcccggtc gacctcggct tcgggcgggc tgaatacctc gttggcgagc
     2041 tcgacctggc tggggtggat cgcccacttg ccctcgcatc ccagcgccgc cgcccgccgc
     2101 gcgctggccc ggaaaccgtc ggggtcggag taatcaccga acgggccgtc gatcggccgt
     2161 agcccgtagg cccggcaggc cacgatcaac cgggacagcg cgaaatgcca ctggtcaccc
     2221 ggatagttgg ggttcaggcc accgatgctc accgtgcggg cccggttgct cgcggcgtag
     2281 tcggccaccc cgaa
//
LOCUS       DASVXZ010000120         3624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_103152, whole genome shotgun sequence.
ACCESSION   DASVXZ010000120 DASVXZ010000000
VERSION     DASVXZ010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3624
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103152"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /locus_tag="VF788_02290"
     CDS             complement(<1..342)
                     /locus_tag="VF788_02290"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF013180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEX8933028.1"
                     /translation="MARLTIEQGAALHPLTQLPGSDLVAQLVDRKVAERDVFAVSWLD
                     VDDLGAVNDRSGFAAGDDLIRELGRVLAQAEQAFPSATVAHIGADDFVVITDPDDIMP
                     LGSGVLDEPWEV"
     gene            319..762
                     /locus_tag="VF788_02295"
     CDS             319..762
                     /locus_tag="VF788_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933029.1"
                     /translation="MFDRQPCHALDHITDADLTGAPAVGIHHNDVVVPAGGDAAADEL
                     QRGQYAGAGSENPGFVAQPGGLSPGVQGVPVGRSSVQCGLPSASTSITPLIAGRSLST
                     VRTSSPLAESGKLTAGCMKSVIRGPDKLWVGAAGARNSVIPAIGR"
     gene            complement(801..1451)
                     /locus_tag="VF788_02300"
     CDS             complement(801..1451)
                     /locus_tag="VF788_02300"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8933030.1"
                     /translation="MTETSVNTRFAFQPLINLHTGGVVAIEMLARPLHRDVRSLLRSA
                     AHTGGLEKLDVTLAVAAARCSSEHETLLPLHLNLMADTVVAECETLFPLHQALSGTAR
                     QTSQTVLEINPPDVELKPDLFYAGLHRLRRLGYRLALDGVGAGNYPLTVIAEAQSELI
                     KMDREIVAGLPGNSSCIAVLEALQHLASRIGAQVVAEGVERPEQLAALRQCGVGLA"
     gene            1826..2086
                     /locus_tag="VF788_02305"
     CDS             1826..2086
                     /locus_tag="VF788_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933031.1"
                     /translation="MTRTAASRCPSTRRQVRDLQRLTHLLGAALLLVYIYVAPHLGAG
                     FVAAVQWFVVPVVVASGMACGNGRGSGRCYAEAGADPCPEHR"
     gene            2068..2559
                     /locus_tag="VF788_02310"
     CDS             2068..2559
                     /locus_tag="VF788_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020500883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX8933032.1"
                     /translation="MSRASLTRTASLGYQVNYLARLLAHALRERIESLGVVPGQFAQL
                     LALYEQDGLTQAELCAQVEIEQPTMAKTLSRMQRDGLIDRVPDPADGRRSLVMLTPRA
                     RELEHELVSAAHAVNAAAIQGLDEQAVVMFMATLTTIIDNIEKAGRRTGKKSNRMRTP
                     AER"
     gene            complement(2809..>3624)
                     /locus_tag="VF788_02315"
     CDS             complement(2809..>3624)
                     /locus_tag="VF788_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016701427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RQC domain-containing protein"
                     /protein_id="HEX8933033.1"
                     /translation="YGLADVVQQRKLIDTSEGDQAHRRRLATHLDAMLALCETVGCRR
                     AQLLAYFGQQGSACANCDTCLSPPQSWDGTIAAQKLLSTVLRLDRERNQRFGAGQVID
                     ILLGKQTPKISQFGHDSLTVFGVGTELREEEWRGVVRQLLAQGLLAVEGDYGTLVLTD
                     SSSEVLSQQRQVFLRREPERPARPEKTAKLRRAAPVDLPEKAIPVFEQLRAWRAVTAK
                     EQGVPAYVIFHDATLRQIAAESPATLADLGTVCGVGENKLAKYGQKILDILLA"
BASE COUNT          669 a         1135 c         1150 g          670 t
ORIGIN      
        1 gacctcccac ggctcatcga gcacgccgga gcctaacggc atgatgtcgt cgggatcagt
       61 gatcaccacg aaatcgtccg cgccgatgtg ggcaacagtt gcggatggga acgcctgttc
      121 cgcctgagcc aacacgcggc ccagttcccg gatcaggtcg tcgcctgccg cgaatccgct
      181 ccggtcgtta accgccccca ggtcatcgac gtccagccag ctcaccgcga agacgtccct
      241 ctcggccact ttgcgatcta ccaattgggc gacgagatcg ctgccgggca gctgggtgag
      301 cgggtgcaga gctgcacctt gttcgatcgt cagccgtgcc atgccctgga tcacatcacc
      361 gatgcagacc tgaccggcgc accggccgtc ggcatccacc acaacgatgt cgtcgtacct
      421 gcgggaggcg acgctgctgc ggacgagctc cagcgcggcc agtacgctgg agctggatcc
      481 gagaacccgg ggttcgtcgc ccagccgggc ggcctctcgc cgggagtaca gggcgtgccc
      541 gtaggccgct ccagcgtgca gtgtggcctg ccctcggcgt ccaccagtat caccccgttg
      601 atcgctggcc gatcgctgag cacagtgcgg acttcttctc cgctggccga aagcggcaaa
      661 ctcacggcgg gatgcatgaa atcggtgatc cggggcccgg acaagctgtg ggtgggggcg
      721 gccggagctc gaaactccgt gatacccgcg attggcaggt aggtctgggg gcggcggctg
      781 ggtggcgcaa agaggttccc ttacgcgagg cccaccccgc actgccgtaa ggcggcgagc
      841 tgttctggac gttccacccc ttcggccacc acctgcgccc cgatccggct agctagatgc
      901 tggagcgcct ccagcacggc gatacagctg ctgtttcccg gcaacccggc gacgatctcc
      961 cggtccatct tgatcaactc ggattgggcc tcagcgatca ccgtcagcgg atagtttcca
     1021 gcgcccaccc catccaacgc gaggcggtac ccgagtcggc gcaaccggtg gagcccggcg
     1081 tagaagaggt cgggcttcag ctcgacgtcc ggcgggttaa tctccagcac cgtttgactc
     1141 gtctgccgtg cggtgccact cagcgcctgg tgtagcggaa agagtgtctc gcattcggca
     1201 acgacggtgt cggccatcag gttgaggtgc aacggcagca atgtctcgtg ctccgaggag
     1261 caacgcgcgg ccgcaacagc cagtgtcacg tcgagctttt ccaggcctcc tgtgtgagcg
     1321 gctgaccgta acagcgaccg cacgtctcgg tgcaggggtc gggcgagcat ctcgatcgcc
     1381 actacgccgc cagtgtgcaa attaatcagc ggctgaaacg cgaagcgggt gttcaccgat
     1441 gtttcggtca ccggatgata gtgccccgca tcatgagcgt caggcaaaca ctcgtgtgtg
     1501 tattcacctc gggttcactc cgttgtagac tgcggattac tgcgagtatt aaatagccga
     1561 agggatgcaa tgactcgatg tgacattcaa ggcactcttc gtggtgggat gccatcaaaa
     1621 aataaaattc gtctatctct ctgacggtga ctgaatagtt tccacattgt tgcgaaaaag
     1681 ccgggacggt ggcgcgagct ttcttttccg aggcggagct ccgcaaactt gccgctgcgg
     1741 ggagcgggcg ccggcgcccg aacagtccca tagcatgcta tggtttttgt cctgggagct
     1801 gccaactggt caggagggtc cttgaatgac ccgcaccgca gcatcacgct gtccgtccac
     1861 tcgccggcag gtccgagatc tgcagcggct aacccacctg ctcggcgccg ccctgctgct
     1921 ggtctacatt tacgtagctc cgcatctcgg tgcgggcttc gtcgcggcag tacagtggtt
     1981 cgtcgtaccc gtggtggtgg cctccggcat ggcctgtgga aatggccgcg gctccgggcg
     2041 atgctacgcg gaagcagggg ctgatccgtg tcccgagcat cgctgacccg tacggcgtcc
     2101 cttggctacc aggtcaacta cctcgctcga ctgctggcgc acgccctgcg cgagcggatc
     2161 gagtcgcttg gggtcgtgcc aggtcagttt gctcaactgc tcgcgctcta cgagcaggac
     2221 ggtctcacgc aggccgagct gtgcgcccag gtcgaaattg agcagcccac catggcgaag
     2281 acgctgagcc gtatgcagcg tgacggattg atcgatcgtg tgcctgatcc cgctgatggc
     2341 cgccgatcgc tggtgatgct gacccctcgg gcccgcgagc tagaacacga gctcgtttcc
     2401 gctgctcacg ccgtgaacgc cgcggctatc cagggcctcg acgagcaagc ggtggtcatg
     2461 ttcatggcca ccctgacgac catcatcgac aacatcgaaa aagctgggcg acgcaccggt
     2521 aaaaaatcga accggatgcg cacgccagcc gaacggtaag agttgaagag cggttgcgat
     2581 cgtcgcggtt gccgccggat gtggttcgga tgaatgacga cagatggagt acagccatgc
     2641 atcagttcca gtgtgggcac caagagtgct tcagccagta cactgcgtca aacaaagatg
     2701 atctcatgcg ccaggtggca gaccacctga aggaagcgca caacgtcgac aatgccaccc
     2761 agaccttgat gaattacctc gaagcaacgt gcgtgacgac taaataatct acgccaagag
     2821 gatatcgagg attttttgtc cgtatttggc tagtttattt tcgccgacac cgcacacggt
     2881 accgagatcg gccagggttg ccggggattc ggcggcgatc tgacgcaggg tcgcgtcgtg
     2941 gaagatcacg taggcgggta cgccttgttc cttcgctgtg acggcgcgcc aggcgcggag
     3001 ctgctcgaac accggaatcg ctttctcggg aagatccacg ggtgcagcac ggcgaagctt
     3061 ggcggtcttc tccggacgcg ccggccgttc aggctcgcgg cgcaggaaaa cctggcgctg
     3121 ttggctgagc acctcactac tggagtcggt gagaaccaag gtgccgtagt cgccttcaac
     3181 ggccagtagc ccctgagcga gcagctggcg caccacaccg cgccattcct cctcgcgaag
     3241 ctcggtgccg acgccgaaga cggtcagcga gtcgtgaccg aactgactga tcttgggtgt
     3301 ctgcttgccg agcaggatgt cgatcacctg gcccgcaccg aatcgctgat tgcgctcccg
     3361 gtcgagccgc agcacggtcg acagcagctt ctgtgccgca atcgtgccgt cccacgactg
     3421 cggcggtgac aggcaggtgt cgcagttggc gcacgcgctg ccctgctggc cgaagtaggc
     3481 gagcaactgg gcgcggcggc acccgaccgt ctcgcacagc gccagcatgg cgtcgaggtg
     3541 agtggccaga cggcggcgat gagcctggtc gccctcggag gtgtcgatca gcttgcgttg
     3601 ctgtacgaca tcggccaagc cgta
//
LOCUS       DASVXZ010000121         3409 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1620162, whole genome shotgun sequence.
ACCESSION   DASVXZ010000121 DASVXZ010000000
VERSION     DASVXZ010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3409
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620162"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VF788_02320"
     CDS             <1..248
                     /locus_tag="VF788_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019819788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001000 - bacterial-type RNA polymerase
                     core enzyme binding [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase-binding protein RbpA"
                     /protein_id="HEX8933034.1"
                     /translation="CPKGHYFTVSFADDAEPPITWECRLHGNESRLFDGVDPQPKKIK
                     PPRTHWDMLLERRSIPELEELLDERLTELRGRRSRSA"
     gene            complement(274..1050)
                     /locus_tag="VF788_02325"
     CDS             complement(274..1050)
                     /locus_tag="VF788_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol monophosphomannose synthase"
                     /protein_id="HEX8933035.1"
                     /translation="MVIPTYDERASLPAVLNRLHHAVPDAHALVVDDNSPDGTGVLAE
                     ELADTDRRVHVLHRAAKAGLGAAYVAGFHWALEHGYDVVVEMDADGSHAPEDLPRLLQ
                     ALANDQADPQGTDADVVLGSRYVPGGRVVNWALYREWLSRGGNYYSRVALGVGINDLT
                     GGFRAYRRRVLDELDLGSVASQGYCFQVDLAWRSVRAGFTVVEVPITFTEREQGQSKM
                     TGTIVLEALWRVTVWGVLHRVAHLRRRSETDTATNATRAS"
     gene            complement(977..2662)
                     /gene="lnt"
                     /locus_tag="VF788_02330"
     CDS             complement(977..2662)
                     /gene="lnt"
                     /locus_tag="VF788_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEX8933036.1"
                     /translation="MNRYGRLLTVGTAAGAGLLLYASAPPRELWWLAPVAFALLWTVL
                     HGRRARAGFGYGFAFGLGFFLPLMSWVGELVGSLPWLALVTVQALVLAVAGAGVAVVS
                     RMPAAPLWATGAWVAAEALIARVPFGGFPWGRVAFGQPSGVFLPVAAIGGAPLLTAAV
                     VLTGFAAGEILRSLARGRALGVPVRKLRALVVTALLAVSPVIAGSLAGLMSGTSAVGG
                     SAVVALVQGNVPRAGLDFNAQRRAVLDNHAARTVQLAAEVTAGRYPRPALVIWPENSS
                     DVDPLRNPDARAVIDRAARAIGVPILVGAVLLTDDEHTTNTAIVWDPNTGPGERHDKR
                     PLPFAEYIPYRDFFRLFSPYVDRAGFFVPGNGNGAVNLGGVRVGVATCSEVIFDDLVR
                     NSIRAGAELLAVPTNNATFGFTEMTYQQQAISRVRAVEHDRTVLVAATSGVSAVIAPD
                     GTVEQQTKLFTPDALVARVPLRSTTTLATRLGPEPEWALVALGVVGVAAAVMHGRRSR
                     GDRSQAAPAKEDVDGGSAGRVRRGGRSNGRGDPDLRRAGQPASGAEPAAPRGT"
     gene            complement(2659..>3409)
                     /locus_tag="VF788_02335"
     CDS             complement(2659..>3409)
                     /locus_tag="VF788_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX8933037.1"
                     /translation="DGSLGSRTAALRTPYADAPGTHGACYLDAQQIAAHVTACTRART
                     QAGFHVIGDAAADAVVAGFEAVEAAIGATALRQCRHRLEHLEMVDADQARKLAAWGVV
                     ASVQPAFDAAWGGAEGMYAQRLGRPRTAMMNRFSLLETAGVVLAFGSDAPVTPVDPWA
                     TVRAATGHRTPGSAIGAMEALAAHSYGGYRAAAADDLLAGTLIPGAPASYAIWDGTGS
                     AGAEFPGVGSPACLRTVYRGRVLFEQEGALV"
BASE COUNT          611 a         1228 c         1087 g          483 t
ORIGIN      
        1 cctgcccgaa aggccactac tttactgtgt cgttcgccga cgatgccgaa ccacccatca
       61 cctgggagtg ccggctgcac ggcaacgaat caagactgtt tgacggtgtc gacccacagc
      121 cgaagaagat caagccaccg cgcacgcatt gggacatgct cctggaacgc cgcagtatcc
      181 ctgagcttga agaactgctg gacgaaaggc tgacggagct gcgcggtcgt cgttcccgct
      241 ccgcctgatc gacttcactt tcaccgcgca gagctagctg gcccgcgtgg cgttggttgc
      301 cgtatcagtt tctgatcggc gacgcaggtg cgccacgcgg tgcagcacgc cccagacggt
      361 cacccgccac agcgcctcca gcacgatggt gccggtcatc ttcgattggc cttgctcgcg
      421 ctcggtgaag gtgatgggca cctccaccac ggtgaagccg gcccgcaccg agcgccatgc
      481 caggtcgacc tggaagcagt acccctgcga ggccacagaa cctaggtcga gctcatcaag
      541 cacacggcgg cggtaggcgc ggaacccgcc ggtgaggtca ttgataccta cgccgagcgc
      601 cacccgggag tagtagttgc cgccgcggga gagccattcc cggtaaagcg cccagttcac
      661 cacccgcccg ccggggacat agcgggaacc cagtacgacg tcggcatcgg tgccctgagg
      721 atcagcctga tcattggcca atgcttgcaa cagccgggga aggtcctccg gcgcatggga
      781 gccatcggcg tccatctcca ccacgacgtc atagccgtgc tccagagccc aatggaaacc
      841 ggcgacgtag gctgcgccga gaccagcctt ggcggcccga tgcagaacgt gcacccgtct
      901 gtcggtgtca gcgagttcct cggccagcac accggtgccg tccgggctgt tgtcgtccac
      961 gaccaacgca tgagcatcag gtaccgcgtg gtgcagccgg ttcagcaccg ctggcaggct
     1021 ggcccgctcg tcgtaggtcg ggatcaccac gaccgttcga ccgaccccct cgacgtaccc
     1081 gccccgctga tccgccatcg acgtcctcct tcgccggcgc agcctgcgac cggtcccctc
     1141 tgctacgtct accgtgcatg acggccgctg ccactcccac cacgcccagc gccaccagtg
     1201 cccactccgg ctcggggccg aggcgggtag cgagcgtagt ggtggaacgc agcgggaccc
     1261 gcgccaccag cgcatccggg gtgaacagct tggtctgctg ctcgacggta ccgtccgggg
     1321 cgatcaccgc gctgaccccg ctggtcgccg ctaccagcac ggttctgtcg tgctccaccg
     1381 ctcggacccg ggagatcgcc tgctgttggt aggtcatctc ggtgaagccg aaggtcgcgt
     1441 tgttggtggg cacggcgagc agctccgccc cagcccggat gctatttcgc acgagatcat
     1501 cgaagatcac ctccgagcac gtggctactc caactctgac ccctccaaga ttcaccgcgc
     1561 cgttgccgtt gcccggcaca aaaaaaccgg cacggtcgac gtaggggctg aacaggcgaa
     1621 agaagtcccg gtacggtatg tactccgcga agggcaacgg tcgcttgtca tggcgctcgc
     1681 ctggcccggt gttcggatcc cacacgatcg cagtgttcgt ggtgtgctca tcgtcggtga
     1741 gcaggacggc tccgaccagg atcgggaccc cgatcgcacg ggccgctcga tcgatcacag
     1801 cccgggcatc cgggttgcgt agcgggtcga cgtctgagga attctccggc cagatcacca
     1861 gcgccgggcg ggggtagcgg ccggcggtga cctccgccgc cagttgcacg gtacgtgcgg
     1921 cgtggttgtc caatacggca cgccgctggg cgttgaaatc cagtcccgcg cggggcacat
     1981 tgccctggac caacgcgacg acggcggatc cgccaaccgc gctcgtccct gacatcaggc
     2041 cggcgagcga cccagcaatc accgggctga cggccagcag agcggtcacc accagtgctc
     2101 tgagcttccg gacagggact ccgagtgcac gtccccgcgc gagcgagcgg agaatctcac
     2161 ccgctgcgaa tccagtcagt accacggccg cagtgagcaa tggcgcaccg ccgatcgcgg
     2221 cgactgggag aaacaccccg ctcggctggc cgaacgccac ccgaccccac gggaaaccac
     2281 cgaagggcac gcgggcgatc aacgcttcgg cggccaccca tgcacctgtc gcccatagcg
     2341 gcgcggcggg catccgggac acgacggcga ctcccgctcc cgccaccgca agcaccagtg
     2401 cctgaaccgt gaccagcgcc agccacggca gcgagcccac caactccccc acccacgaca
     2461 tcaacggcaa gaagaaaccg agcccgaagg cgaagccgta accgaaaccg gcgcgggctc
     2521 ggcgcccatg cagcaccgtc catagcagcg caaacgccac cggcgcgagc caccacagtt
     2581 cgcgcggcgg ggcactggcg tacaacaaca gaccggcacc agcagcggta cctacggtga
     2641 ggagccggcc ataccggttc acaccagggc gccttcctgc tcgaacagga cccggccccg
     2701 gtacacggtg cgcaggcatg cgggtgagcc gaccccgggg aactcggccc cagcggatcc
     2761 ggtgccgtcc cagatcgcgt acgaagccgg ggcgccgggg atgagcgtgc cggccagcaa
     2821 gtcatccgca gcagcagcgc ggtatccgcc gtagctatgc gctgcgagcg cctccatcgc
     2881 gccgatcgcc gagccggggg tgcggtgtcc cgtcgcggcg cgcaccgtag cccacggatc
     2941 gactggcgtg accggtgcgt cggaaccgaa cgccagcact acgccggccg tctcgagcag
     3001 cgagaagcgg ttcatcatgg cggtccgagg tctccccagc cgttgggcgt acattccctc
     3061 tgcgccaccc caggcagcgt cgaaggccgg ttgcacgctg gccaccacac cccaggccgc
     3121 caacttgcgc gcctgatcgg catcgaccat ctccagatgt tccagccggt gccggcactg
     3181 ccggagcgcg gtggcgccga tggcagcctc caccgcctcg aagccagcca cgaccgcatc
     3241 ggccgcggcg tccccgataa cgtggaaccc ggcctgagtc ctggcccggg tgcaggccgt
     3301 aacatgcgcg gcgatctgct gcgcgtcgag gtagcacgca ccatgggtgc cgggtgcatc
     3361 ggcgtagggc gtgcgaagcg ccgcggttcg cgagccgagc gacccgtca
//
LOCUS       DASVXZ010000122         2035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_461633, whole genome shotgun sequence.
ACCESSION   DASVXZ010000122 DASVXZ010000000
VERSION     DASVXZ010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461633"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VF788_02340"
     CDS             <1..213
                     /locus_tag="VF788_02340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933038.1"
                     /translation="GQRVSWHMVELGFQTLTEGGRLELTYPSDSGVWRAKDYGPDELA
                     RGVYVGLTEAETTRRVALAERGGAQY"
     gene            complement(353..1333)
                     /locus_tag="VF788_02345"
     CDS             complement(353..1333)
                     /locus_tag="VF788_02345"
                     /inference="COORDINATES: protein motif:HMM:NF012870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEX8933039.1"
                     /translation="MSIVEACALTGRSRATHYRRVDPLGTAVLGPVHGPWLPRRLPPS
                     AITNDERAQVLALLNSEPYRDLAIPQVWARELDEGRYWCSESSMYRIARDAGQSRERR
                     AQATHPARVRPELVAYGASEVWSWDITALKGPRKGEWYKLYVVLDIFSRYVPGWLVAH
                     AEDAVVAKDFLAGAVARNLVIPHTIHADRGGSMTSKPVSEMMIDLGICRSHSRPRTSN
                     DNPFSEAQFKTLKYVPDFPDRFGSLADARTFCDRFFPAYNHEHRHSGIGMHTPASVHY
                     GTATNIRARRQATLDRAHAQHPERFSRRPEPPRLPEQAWINQPTQLEPTQ"
BASE COUNT          333 a          648 c          673 g          381 t
ORIGIN      
        1 ggccagcggg tttcctggca catggttgaa ctcgggttcc agacgctgac cgaagggggc
       61 cgccttgagc tgacctaccc gtcggattcg ggtgtctggc gggctaagga ctatggacct
      121 gatgagctgg cgcgaggcgt atacgtcggc ctcaccgaag ccgagacgac tcggcgagtg
      181 gccctcgccg agcggggcgg ggcccagtac taaggcgcta tgcgagcacc agtaggccat
      241 ctcggcgatc tgagggagcc tcagtccgcc tcatcgtcgg ggtggtgcag tactgtcagc
      301 atcagcagcg ggcccggagc ggtagctgtc aagtcaaatg agacagtgga tcttactggg
      361 ttggctctag ttgtgtgggt tggttaatcc acgcctgctc gggcaggcgt ggtggctcag
      421 gtcggcggct gaaccgctcg gggtgttgcg cgtgggcgcg gtcgagggtg gcttggcgtc
      481 gtgcacgaat gttggtcgcg gttccgtagt ggactgaggc tggggtgtgc atgccgattc
      541 cggagtggcg gtgttcgtgg ttgtaggcgg ggaagaatcg gtcgcagaac gtgcgtgcgt
      601 cggcgagtga gccgaaccgg tcggggaagt cgggaacgta tttgagggtc ttgaactgcg
      661 cctcggaaaa ggggttgtcg ttcgatgtcc ggggccggga gtgggatcgg cagatcccga
      721 ggtcaatcat catctccgac accggtttcg acgtcatcga gccgcctcga tcggcgtgga
      781 tcgtgtgtgg gatgacgagg ttacgggcca ccgccccggc gaggaaatct ttcgccacga
      841 ccgcgtcctc ggcgtgggcg acgagccacc cggggacata gcgggagaag atatccagca
      901 cgacgtagag tttgtaccat tcccctttcc gtggtccttt caacgcggtg atatcccagc
      961 tccacacctc actggcgcca taggcgacca gctcgggacg gacccgggcc ggatgggtgg
     1021 cctgggctcg ccgttccctg ctttgcccgg cgtcgcgggc gatgcggtac atgctcgact
     1081 ctgagcacca gtagcggccc tcgtcgagtt cccgggccca cacctgcggg atcgccaggt
     1141 cacggtaggg ctcggagttc aacagcgcca ggacctgggc ccgttcgtcg ttggtgatcg
     1201 ccgagggcgg cagcctccgt ggcagccagg gtccgtgcac cggacccagc actgccgtcc
     1261 ccagcgggtc gacccgccgg tagtgggtgg cccgagaccg tccggtcaac gcgcacgcct
     1321 cgacaatcga cacctccgct gtctgcagct cagcgaacgc agtgttcagg atttcttcgg
     1381 cggcatcggt ggtcgctggt cgtccgcgct ctcggacagc tgctccaaga gcgcgtgcgc
     1441 ttttcccata atgtctaacg cggtccgagt gttctttaac tcggcctcaa gtctcgcgtt
     1501 ccgggctcgg agccgttcca actcggctgc ttccaccgac cgcttcggtc gtttctccga
     1561 ccgccgggaa tccaccaccc cttctaacgc ccccgcatca cgggaacggg tccactcaat
     1621 cacatgcgac gaatacaaac cctcccgacg caagatcgcg cctttctccc cattcggcgc
     1681 attctcatac tccacgacaa tcgccagctt gtactccgga ctaaacgagc gacgcgatgg
     1741 acgcggcgac ggtccctctg ccgaccgcgg tcccgacggc gctggcggct cgactcctcc
     1801 gccaccgcca gccgcaccgc gacgctcctc cgttgacaca aacaccagga tctccgatca
     1861 cgccccctgc agtgaaccgc tggcaccaaa ctgtctcacc agatcctgac agagagggat
     1921 cggccggtcg gcgtcgacgg tcagtcggga gctgcgtcgc aacgctgagc agtccgggat
     1981 attttcctca taccgcggag aggatcgcgg ctgaacggct ccctcggccg cgcgc
//
LOCUS       DASVXZ010000123         4656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_544564, whole genome shotgun sequence.
ACCESSION   DASVXZ010000123 DASVXZ010000000
VERSION     DASVXZ010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544564"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..487)
                     /locus_tag="VF788_02350"
     CDS             complement(<1..487)
                     /locus_tag="VF788_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8933040.1"
                     /translation="MVPTEADRTATMHRVLVAEDEALIRLDLVEMLSEGGYVVIGEAA
                     DGEQAVEQAEALRPDLVIMDVKMPKMDGIDAASIIAERRIAPVVILTAFSQRDLVERA
                     RDAGAMAYLVKPFGRRDLMPAIELAVSRFRELVALESEVAGLTDRLETRKAVERAKGL
                     LM"
     gene            639..712
                     /locus_tag="VF788_02355"
     tRNA            639..712
                     /locus_tag="VF788_02355"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:673..675,aa:Leu,seq:caa)
     gene            1200..1799
                     /locus_tag="VF788_02360"
     CDS             1200..1799
                     /locus_tag="VF788_02360"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8933041.1"
                     /translation="MTTATAITTSCDGATTTSTVSDLLLRVGEGESAAWGEICRRYGK
                     LVSATVRSFRLQEADALDAVQMTWLRLAENAHRIRFPERLGGWLVTTARRECLHILRL
                     ANAAGGIGIAPEAVVDPSVGPEQRVIDADTSRTLWKLVAELSPRRRTLLRTLFTDNSW
                     SYAEVAHVAGIPPGGIGPTRARALQQLRRRLNEQELDCR"
     gene            complement(1846..2538)
                     /locus_tag="VF788_02365"
     CDS             complement(1846..2538)
                     /locus_tag="VF788_02365"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX8933042.1"
                     /translation="MAAHGRPIVDVLAEIPLFQVLSQEGISAAARAGLSRTYAPGQII
                     CHQGDPGDHLYAVIKGLVKIVFASERGDEMVLNILGPEEIFGELALLDGSPRSASVVA
                     LKSTLVFVLPRRRLLELMSVNPGLADEFLKLIGKLVRNLTEKAGDLAFLDLVGRLAKL
                     LLQLSAMHGHVHGVVLDSGLTQTDLARMIGASRPAVNRALRSLAARGLIELQGRTIVL
                     HDLEALRKRSQV"
     gene            3774..>4656
                     /locus_tag="VF788_02370"
     CDS             3774..>4656
                     /locus_tag="VF788_02370"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX8933043.1"
                     /translation="MVGATALSQLLDPEDLRELIVSCQEICGDAVLTHEGHVAQYLGD
                     GVLMYFGYPRSHEDEAQRAIRCGLDILKGVEAVRDSGKIPPGTPLAVRLGAHTGRVVV
                     GPVGPVGEGRRRNQIALGDTPNIAARIQSRAEPGTLVVSDVTWRIVKGYFKGKCLGEW
                     RLKGVREPMRLWLVTGESPSRERVEVASMLTPFVGREQERSELVRAWEDSRAGRSCFV
                     LLRGEPGMGKSRLAQLFRDEVQFLASELLGIRATPYNSKSPFYPVIELIERRFGLDHS
                     QTPAVRLARLERGLADVG"
BASE COUNT          896 a         1451 c         1455 g          854 t
ORIGIN      
        1 ccatcagcag gcccttggcg cgctcaaccg ctttgcgggt ctccaaccga tcggtcaggc
       61 ccgctacctc tgactctagg gctaccaact cgcgaaagcg cgacacggcg agctctattg
      121 ctggcatcag atccctgcgg ccgaaaggct tcaccaggta ggccatcgcg ccggcgtcgc
      181 gggcccgttc caccagatca cgctggctga acgcggtgag gatcacgacc ggcgcgatgc
      241 gccgctctgc gatgatcgac gccgcgtcga tgccgtccat ctttggcatc ttcacatcca
      301 tgatcaccag atcgggccgc agcgcctcgg cctgctcgac ggcctgctcc ccgtcagcag
      361 cctcgccaat gacgacatag cctccttcgg agagcatctc gacaaggtct agccggatca
      421 gcgcctcgtc ctcagcgacc aggacccgat gcatcgttgc tgtccggtcc gcctcggtgg
      481 gtaccatgct tgcgttggcc tgcgaagtca ccttcagacc tccgttcctc cagctttacc
      541 ccaggactcg cacgatagcg atgtcgggag ccggacgggg ccatctgtcg acaggtcgta
      601 cagtgatccc gacaacaccg tgatccgtcc aaccacccgc ccccgtagcc caaccggcag
      661 aggcaacgga ctcaaaaccc gtccagtgtg ggttcgactc ccaccggggg cacaacctct
      721 caccaaaatt tatcgtgact aacaagatcg agtttggtcc gtgctggcca tgacctggcc
      781 cacctgacga gcacggtgcg gtacgggccg ggcagcgctg ccacatggag cgtcgtgtac
      841 cgaagagaac aggtgcactg tcatcgcggg cacagccgaa gcgtcagttg tgcggcatcg
      901 tctgacgcac gtgatcgact agaatggttt tcctgaggta cgaggaggag cactttacgt
      961 gtacccaaaa gacttcatca ttccgaaatt gcggtactgc acaattggcg ggagcgcgag
     1021 cggtgtgacg gggatggctt gcgcaaactt gtcgatgcga acgtttaggt agacatctct
     1081 ggcccacgtc ccgccgtatt cttgactatc gctcggtact tccgaggccg atcgttaaga
     1141 ctgtcgccag catcgactaa ctctgcaaat gagtaattct cagctcacag gggcctgcga
     1201 tgacgacggc aaccgctatc accaccagct gtgatggtgc caccaccacg agcaccgtgt
     1261 ctgacctatt gttacgggtt ggcgagggag aatccgcggc ctggggcgaa atttgccgcc
     1321 ggtatggaaa gctcgtgtct gcgactgtgc ggtccttccg attgcaggag gccgatgcgc
     1381 tcgacgcagt gcagatgacc tggctgcggc tagcggaaaa cgcgcatcgg atacggtttc
     1441 ctgagcggct gggtggttgg ctggtgacca ctgcccgccg tgaatgcttg catatcctgc
     1501 gcctggccaa cgccgcaggt ggtatcggga tagcgcccga agctgtcgtc gacccatcgg
     1561 tgggtcctga gcagcgcgtc atcgacgccg acacatcacg gaccctgtgg aagctcgtcg
     1621 ccgaattgtc gcctcgtcgg cggaccctgc tgcggacact gttcaccgac aactcctggt
     1681 cctacgccga ggtggcccac gtcgccggaa taccgcccgg cgggatcggg cccacccgag
     1741 cgcgggccct tcagcagctg cggcgaaggc tgaacgaaca ggagttggac tgccgctaat
     1801 tcacgttctc gcttgatcag cagacggcag ggacgcgaga taggctcaca cttggctccg
     1861 tttacgcagg gcctccagat catgaagtac tatggtgcgt ccctgtaatt cgatgagtcc
     1921 ccgtgcggcc agcgaccgca gtgcacggtt caccgccgga cgtgaggcac cgatcatcct
     1981 ggcgaggtcc gtttgagtca gtccgctgtc gagaacaacg ccatgcacgt ggccgtgcat
     2041 ggcggaaagc tgcagaagaa gttttgccag ccgccccacc aggtcgagga atgccaagtc
     2101 acctgccttt tccgtgaggt tccgaacgag cttgccaatt aacttaagga actcgtctgc
     2161 cagtccggga ttgacactca tcagctctag cagtcgcctc ctcggcaaca cgaagaccaa
     2221 cgtggacttc aacgcgacca cggacgcgga gcgtggtgat ccgtcgagca gcgctagctc
     2281 accgaatatt tcctccggtc cgaggatgtt gagcaccatc tcgtcaccac gttctgatgc
     2341 aaagacgatc ttcaccagcc ctttgatcac agcataaaga tgatctccgg gatcaccctg
     2401 gtgacagatg atctgtccag gagcgtaggt tcgggacagg ccggcgcgcg cggctgccga
     2461 aatgccctct tggctgagca cttggaacag cggaatctcg gccagtacat caacgatcgg
     2521 ccggccgtgt gcggccatga gtacagtcta gtactccagt cgtagaccgt gatcttgcgg
     2581 tgtgtcgatc cgggacataa ggccgcccac atgagcgtct tcgggctgta tccacgttag
     2641 aaggcgccga agagcgcggt tgccccatgg cggttggcac agcgcgggcg tgcgcgcgac
     2701 aacgacgatt cgatcggtgg ctacctggac tggccgggat gaggacttac tacctcaggc
     2761 gcgcacggca ccgttgtatt aaggcgatcg tgtcctggcc atgcactaaa gcgcggagcc
     2821 aggccccctc gggcacctcg gcgtaacgca acaaccggca ttcgccgggc cgttgcggct
     2881 tctgagtggg ccgggtgggt gagccgatcg ctaaatgcgc cagcgccgtc ggtgacgcca
     2941 aggccatcga acgggaagtc ttcacttcct ctagcaaggc agtacactct cggagtggga
     3001 gaatgtccct gtgggagaca ggcgatgatg accgcgccgc atatcaagtg ctgaaatgac
     3061 tgttttatac cggtcctcga caacgcccgg agcgcctgcc ggtccacttt gtcatccccc
     3121 gggggcatca tctccattaa tacaacactc cggctgcccc gcgcacgacg acggggtcgg
     3181 accggcggac ggccggcgtg gagacggcct acacgctgct cgaggtcgtc caggcccgct
     3241 ggcgacggct caaacggcct cgggcccgtc gcgctggcac cgagttcatc gacgggaact
     3301 gcaagaaagg gacgaccacg aacgggagtt tgagggtgcg ccgccttaga tgcagtcgcg
     3361 aaagctgcaa aatcgtcaag tcggctggct gggagggatg cagtggctcc accaacggca
     3421 gagcacgacc gcgatgacga catagtccag ctcgccctaa caatcctcga cgaagaattg
     3481 cgctcgtggg taaagatccg gcaccgaggt catgcatcgc aagcccaggg cgacttggag
     3541 tcacacgggc agagcgggga cgcttcgtga tctgtatcca ctgcgggaac gagaacgcca
     3601 cctcatttcg cttctgtagc aactgtggca cccagctcgg ccaagcatgc ccgacatgcg
     3661 gttttgagaa tcccgcaaag tcgagattct gtggcggttg tggctcccgg ctagagattc
     3721 ggggggaaga cgttccgggc gagcgccgcc aactcactgt gctgttctgc gacatggtag
     3781 gagccactgc gctgtctcag cttcttgatc ccgaggacct gagggagctg atcgtgtcct
     3841 gccaggagat ctgcggggac gcggtgctca cccacgaagg ccatgtcgcc caatatctcg
     3901 gcgacggcgt actgatgtac ttcggctatc cgcgctccca cgaggacgaa gcgcaacgag
     3961 ccatccgctg cggcctcgac atcctcaagg gtgtggaggc ggtccgcgac agcggcaaga
     4021 ttccgcccgg cacgcccctt gccgtccgct tgggcgcaca cacgggacgt gtcgtagtgg
     4081 gcccggtggg cccggtgggc gagggccgtc ggaggaatca gatcgcgttg ggcgacacgc
     4141 ccaacatcgc cgctcgcatc cagtcgaggg cggaacccgg cacgctcgtc gtcagtgacg
     4201 tcacctggcg gatcgtcaag ggctacttca agggcaagtg cctcggagag tggcgactga
     4261 aaggcgtccg tgagcccatg cggctttggc tcgtcacggg cgagagcccg tcgagggaac
     4321 gcgtcgaagt cgccagcatg ttgaccccct tcgttggtcg ggaacaggaa cggtccgagc
     4381 tcgtgcgcgc ctgggaggac agccgcgcgg gccgtagctg cttcgtgttg ttgcgtggcg
     4441 aacctgggat gggcaagtcc cgactcgcgc agctcttccg cgacgaggtg cagtttctgg
     4501 cgagcgaact gcttggcatt cgagccactc cgtacaacag caaaagtccg ttctaccccg
     4561 tgatcgagct gatcgagcgc aggttcgggt tggaccacag ccagacgccg gccgtgcgct
     4621 tggccaggct cgagcggggg cttgcagatg tcgggc
//
LOCUS       DASVXZ010000124         5043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_640728, whole genome shotgun sequence.
ACCESSION   DASVXZ010000124 DASVXZ010000000
VERSION     DASVXZ010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_640728"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VF788_02375"
     CDS             complement(<1..520)
                     /locus_tag="VF788_02375"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEX8933044.1"
                     /translation="MVYRLHTSDRTAFKRCRRQWDFSSGNRRNLEPIAHPGSVDLNKA
                     LRDALAVYYFPGMWEWDRSIVRPLVHQAMDRSLRGQAEGAADDDALHELLDRGHALLD
                     AYAAWAPTVDHFTPIRVESDFEVNIPDPARPGVNLLTSDGEEVRICGRVDLLVIDSED
                     AYWVVQHRLVTAG"
     gene            complement(704..991)
                     /locus_tag="VF788_02380"
     CDS             complement(704..991)
                     /locus_tag="VF788_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933045.1"
                     /translation="MAEIVADWPEPGEVVYIERRGENYAVKRTGDDGALPIPAPEEAL
                     PDAWIYYGGWQAHHRDDLTAFFDDLFAEMDAAAGGHDRCRWSADDPWPHAH"
     gene            complement(1032..2219)
                     /gene="hypE"
                     /locus_tag="VF788_02385"
     CDS             complement(1032..2219)
                     /gene="hypE"
                     /locus_tag="VF788_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEX8933046.1"
                     /translation="MTHQDTTQQQQAAWAEEAVVEHDAGTGYPAHATPGTEHTGREQL
                     VLERIERARRARPRVREKLITLAHGAGGKATQSLIEAIFLEAFRNPLLEPLEDAASVT
                     AGDVRLAFTTDSYVVSPLFFPGGNIGDLAVNGTVNDLAVSGAQPAHLSAGFILEEGFP
                     VEDLRRIVASMSAAAAAAGVSIVTGDTKVVQRGKGDGCYINTAGVGLITGGLTLGVAT
                     ARPGDVVIVSGPVGDHGITILLERGELDLDAELVSDTAPVHELVRGLLDAVGPNVRAM
                     RDATRGGVATILNEVATAAGVAVVVDEESVPVRPEVRGACELLGIDPLYVACEGRIVA
                     IVDPGAVDAAVAALQAHPLGAGATAVGRVSADPPGLVLLKTGFGGTRIIDLLVGDPLP
                     RIC"
     gene            complement(2216..3355)
                     /gene="hypD"
                     /locus_tag="VF788_02390"
     CDS             complement(2216..3355)
                     /gene="hypD"
                     /locus_tag="VF788_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEX8933047.1"
                     /translation="MRFVDEYRDAEKARALAAKIAALCEPGRHYKFMEVCGGHTHTIY
                     KHGLEDYLPESISLVHGPGCPVCVLPMGRVDDAIALAEQPDVIMTSFGDMMRVPGGRG
                     SFFDSSAAGTDIRMVYSPLDALKVARQNPDKHVIFMAIGMETTTPSTAMTVLRAAAEG
                     IENFSIFCNHVMIVPAIKAILDSPDLRLDGFIGPGHVSTVIGCRPYEYIPAEYGKPIV
                     TAGFEPLDILQSVYMLLQQLAEGRCEVENQYARVVPWDGNTVALRAVAEVMELRPYFE
                     WRGLGFISHSALQVREKYAAFDAERHFKLPGVRVADPKACQCGEVLKGVLKPWECKVF
                     GTACTPEMPIGTCMVSSEGACAAYYNFGRFSRQRIREVSIESSRA"
     gene            complement(3361..3642)
                     /locus_tag="VF788_02395"
     CDS             complement(3361..3642)
                     /locus_tag="VF788_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEX8933048.1"
                     /translation="MCLGIPGEVIEILPDQPDLARVDVSGVKRAINIGLLNDDPPVPG
                     DWILIHVGFALSKIDEQEAKAAMDFLIGIGQAYEDEIAALLESRIDERQ"
     gene            complement(3709..4284)
                     /locus_tag="VF788_02400"
     CDS             complement(3709..4284)
                     /locus_tag="VF788_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protease"
                     /protein_id="HEX8933049.1"
                     /translation="MTVVTGAVTTMVAGIGNIFLSDDAFGVELARRLNSEKLPNGVRV
                     VDYGIRGMHLAYDLLEMAPATTILLDAVSRGGEPGTIYVLEIRDGDVPDLKPSTVDAH
                     GMAPDAVLALLDNLGGNAGRTLLVGCEPVSTEEGIGLSTTVAEAVDRAVGVVMDLLTD
                     KEGSEENVPSGASAGVLGVSDRPGDRSGTGV"
     gene            complement(4281..>5043)
                     /locus_tag="VF788_02405"
     CDS             complement(4281..>5043)
                     /locus_tag="VF788_02405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933050.1"
                     /translation="HSLIAAHTVIAVTDGEFISLLDPPEWAKPATEACRNERIWPVMV
                     GDEGRRDVILSSPIILYDYPSIAPESPGELFDGLEIDEILTLRTMTLTDEEKAEARAT
                     DEKTRKLMDRVDSMPPEMLDKLHGAIRYLGETPGIRKEPDPIETITTPGTPWWDPAAD
                     ASVDPETDSVTIAGVEVAKGSKVVLMPGSRRADAQDMFLEGRTATVAAVLLDVDGNTH
                     VAVTIDDDPGAEISAAHGRFRYFAPDELSPVGAHS"
BASE COUNT          905 a         1683 c         1544 g          911 t
ORIGIN      
        1 accccgcggt gaccagacga tgctgaacaa cccagtaagc atcctcggag tcgatgacca
       61 gcaggtcgac gcgaccgcaa atcctgacct cttcaccgtc ggaggtcagc aggttgacgc
      121 caggtctagc cgggtcggga atgttcacct cgaaatcgct ttcgacgcga ataggggtga
      181 aatggtctac ggttggcgcc caggccgcgt aggcgtcgag cagcgcatga ccccggtcta
      241 gcaattcgtg cagcgcatca tcgtcggcgg caccttccgc ttggccgcgc agcgagcgat
      301 ccatagcctg gtgcaccaat ggccgcacga tgctccggtc ccattcccac attccgggga
      361 agtagtacac cgcaagcgcg tcgcgcaatg ccttattcag atcgaccgag ccgggatggg
      421 caataggttc gaggtttcgc cggtttcccg agctgaagtc ccattgccgg cggcaacgct
      481 tgaatgccgt ccgatccgat gtatggaggc ggtacaccat cgcgccctcg actcagtgcc
      541 cagtagtacc ccgtgatctc gggcatgttc cgtagatctt gaggttcacg atcaacccta
      601 gtgttgccga gttcgacagc agtgctgtgc aagcgtttcc agacagcctt gctgccgaac
      661 tcggcgcaca acgaacacac atcggccgcc gagccggatg cggctagtgc gcgtgcggcc
      721 aggggtcatc tgccgaccac cggcaacgat catggcctcc agccgccgcg tccatctcgg
      781 cgaagaggtc atcaaagaat gccgttaggt catcgcggtg gtgtgcctgc cacccgccgt
      841 aataaatcca ggcatccgga agtgcctcct ccggtgccgg gatgggcaac gcaccatcgt
      901 caccggtgcg cttgaccgca tagttttcac cccggcgttc gatataaaca acttcaccgg
      961 gttcgggcca atcggccacg atctcggcca tcaactctgt tcgattcagc ggacctcccc
     1021 ggcactatgg gtcagcagat ccgtggcaac ggatcgccga cgagtagatc gatgattcgg
     1081 gttccaccaa agccggtctt gagcaggacc aacccgggcg gatccgcgct gacgcggccg
     1141 accgctgttg ccccggcacc taggggatgc gcctgcagcg ccgccaccgc ggcgtcgacc
     1201 gcgcccggat cgacgatcgc cacgatgcgt ccttcgcagg cgacgtaaag cgggtcgatg
     1261 ccgagcagct cacatgcgcc acggacctcc ggccgcaccg gaaccgactc ctcatcgact
     1321 accacggcca caccggcggc ggtggccact tcattgagta ttgtcgcgac tccaccgcga
     1381 gtggcgtcgc gcatcgcgcg gacgttcggg ccgaccgcat cgagtaggcc ccggaccagc
     1441 tcatggaccg gcgcggtgtc ggacaccagc tcagcgtcga ggtccagctc gccgcgctcc
     1501 agcaggatgg tgatgccgtg gtcgcccacc gggccggaca cgatcaccac atcgccaggg
     1561 cgggccgtgg ctacgcctag cgtcaagccg ccggtgatca atccgacgcc ggctgtgttg
     1621 atgtagcagc cgtcgccctt gcctcgctgc acgaccttgg tgtcgccggt cacaatggac
     1681 actccggccg cggccgcggc agccgacatc gacgccacga tccgccgcag gtcctcgacc
     1741 gggaatcctt cctccaggat gaagccggcc gaaagatgcg ccggttgcgc tccggagaca
     1801 gccagatcat tgacggtgcc gttgaccgca aggtcaccga tgttcccacc ggggaagaac
     1861 aacggtgata cgacgtagga atccgtcgtg aaggccagcc gcacatcgcc cgcggtcacc
     1921 gacgcggcgt cttccagtgg ctccagcagc ggattacgga atgcctccaa gaagattgct
     1981 tcgatcagcg actgggtcgc cttaccaccg gcaccgtgcg caagggtgat gagcttttcg
     2041 cgcacccgag gccgcgcccg ccgggcgcgc tcgatgcgtt ccagcaccaa ctgctcccgc
     2101 ccggtgtgct cggtcccggg tgtggcatgc gcggggtaac ccgtgccagc gtcgtgctcg
     2161 acgacggcct cctccgccca ggcagcttgc tgctgctggg tggtgtcttg atgcgtcatg
     2221 ccctgctgct ttcaatactg acttcccgga tccgctggcg gctgaaccgg ccgaagttgt
     2281 agtacgccgc acaggccccc tcggaggaca ccatgcacgt gccgatcggc atctcaggcg
     2341 tgcacgcggt gccgaagacc ttgcattccc acggcttgag tacacccttg agcacctcgc
     2401 cgcattggca ggccttcgga tcggcgaccc ggacgccggg gagcttgaag tgccgctctg
     2461 catcgaaggc tgcgtacttc tcgcggactt gcagcgcgga gtgcgagatg aagccgaggc
     2521 cccgccactc gaagtaggga cgcaactcca tcacctcggc caccgcccgc agcgccaccg
     2581 tgttgccgtc ccacggcacc acccgggcgt actggttttc cacctcgcag cggccctcgg
     2641 ccagttgttg cagcagcatg tacaccgact gcaggatgtc cagcggctcg aaccccgccg
     2701 tgacgatcgg cttgccgtat tccgctggga tgtactcata cggccggcag ccgatgacgg
     2761 tggagacatg gccggggccg ataaacccgt ccaatcgcag gtcgggggag tccaggatgg
     2821 ccttgatcgc tgggacgatc atgacgtgat tgcagaagat cgagaagttc tcgatgccct
     2881 cagccgctgc gcgcagcaca gtcatggcgg tggacggcgt ggtggtctcc atcccgatcg
     2941 ccatgaagat cacgtgcttg tccggattct gccgggcgac cttcagcgcg tcgagcgggg
     3001 agtagaccat ccggatatcg gtgccggcgg ccgaggagtc gaagaacgat ccgcgcccgc
     3061 cgggcacccg catcatgtcg ccgaaggatg tcatgatcac atctggctgc tcggccagcg
     3121 cgatcgcatc gtccacccga cccattggga gtacgcacac cgggcagcct ggcccgtgga
     3181 ccaggctgat ggattccgga aggtagtcct ccaacccgtg cttgtagatc gtgtgcgtgt
     3241 gcccaccgca gacttccatg aacttataat gccgccctgg ctcgcacagc gccgcgatct
     3301 tagcggctag cgcgcgagcc ttttcggcat cccggtattc atcgacgaat cgcatcgtgc
     3361 tcactgcctt tcgtcaatcc gcgattcgag cagggcggcg atctcatcct cgtaggcctg
     3421 tccgatgcct atcaggaagt ccatcgcagc cttggcctct tgctcgtcga tcttggatag
     3481 cgcgaaaccg acgtgaatca aaatccagtc accgggtaca ggcggatcat cgttcaagag
     3541 accgatattg atcgcgcgct tgactccgct gacatcgacc ctggccagat cgggctggtc
     3601 gggcaggatc tcgatcacct cgcccgggat gccgaggcac atgagctata acctccgtgg
     3661 tgggagttgg gtcacatctc gcttatttgc ttgtagcgag ctacgtcctt agacacctgt
     3721 accgctacgg tcaccaggcc gatcgctgac ccccagaaca ccagccgacg caccagacgg
     3781 aacattttct tcacttcctt ccttgtcggt gagcagatcc ataaccaccc cgacagccct
     3841 gtcgacggct tcggcgacgg ttgtggataa cccgatacct tcctcggtgc tgaccggctc
     3901 acaaccgacc agtagagtcc gccccgcgtt gccgccgagg ttgtccagca gcgcgagcac
     3961 cgcgtccgga gccatcccgt gcgcgtcgac agtggagggc ttgagatccg gcacgtcacc
     4021 gtcacggatc tcaagcacat agatcgttcc cggctctccg ccgcgggaca cggcgtcgag
     4081 caggatcgtg gtggccggag ccatctcgag tagatcatag gccagatgca tgccacggat
     4141 cccgtaatca accactcgga cgccgttggg cagcttctcg gaattgagcc ggcgggccag
     4201 ctctacgccg aatgcatcat cgctgagaaa gatattgccg ataccggcca ccatcgtggt
     4261 cacggccccg gtcaccacag tcatgagtga gctcccaccg gcgatagctc gtcgggagcg
     4321 aagtaacgga atcggccatg cgctgccgaa atttcggccc ctggatcgtc atcgatggtg
     4381 accgcgacgt gggtgttgcc gtcgacatcg agcaacaccg cagcgacagt ggcagtgcgc
     4441 ccttcgagga acatgtcctg cgcatcggcc cggcgcgacc ctggcatgag caccaccttg
     4501 ctgcccttgg ccacctcgac cccggcaatg gtcacgctgt cggtctcggg gtctactgag
     4561 gcgtccgcgg caggatccca ccatggggtg ccgggggtgg taatcgtttc gatcgggtcc
     4621 ggctccttgc ggatgcccgg agtctcgccg agataccgga tcgcgccgtg cagcttgtcc
     4681 agcatctcgg ggggcatcga gtcgacccga tccatcagct ttcgcgtctt ctcgtcggtc
     4741 gcccgcgcct cggccttctc ctcgtcggtc agggtcatcg tgcgcagggt gaggatctcg
     4801 tcgatctcca ggccgtcgaa cagctcgccg gggctctccg gagcgatcga cgggtagtcg
     4861 tacaggatga tcggcgagga caggatcaca tcgcgacgcc cttcgtcgcc gaccatgacc
     4921 ggccagatgc gttcgttgcg gcacgcctcg gtagcgggtt tggcccactc cggcggatcg
     4981 agcagcgaga tgaactcccc gtcggtcacc gcgatcacgg tgtgcgcggc gatcagcgaa
     5041 tgt
//
LOCUS       DASVXZ010000125         4893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_13437, whole genome shotgun sequence.
ACCESSION   DASVXZ010000125 DASVXZ010000000
VERSION     DASVXZ010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4893
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13437"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..708
                     /locus_tag="VF788_02410"
     CDS             103..708
                     /locus_tag="VF788_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015801306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEX8933051.1"
                     /translation="MAINPATTAVVLIEYQNDFTSEGGVLHGAVEAVMDKTDMLANTK
                     RVVDAARAAGVTVMHAPITFAKGYGELSAHPYGILKGVVDGQCFVKDSWGAAIVDELS
                     PQEGDIVIEGKRGLDTFASTNLDFILRNKGITTIALGGFLTNCCVESTMRTGYEHGYQ
                     VVTLTDCMAATSPEEHDNAIAYDFPMFSKPTTSQDFIGELA"
     gene            complement(846..1013)
                     /locus_tag="VF788_02415"
     CDS             complement(846..1013)
                     /locus_tag="VF788_02415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933052.1"
                     /translation="MAAETFGWSQLRDEQLRAMEQEMPGHDVLAVLLTGSGKSAWGHG
                     FRPDYLRLRDH"
     gene            1167..1961
                     /locus_tag="VF788_02420"
     CDS             1167..1961
                     /locus_tag="VF788_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8933053.1"
                     /translation="MTDSRPLALVTGASSGIGLELAKQFVEHGFDLLVNAEDGGLDTV
                     AVQLASTGASVQPIRADLRTIEGVERLWEQIAATGRPLDVAALNAGVGEGGPFLETDL
                     SAELEIIDVNVRSTVVLAKRVLRAMAARDEGKVLITSSIASTMPGSFQAVYNASKSFL
                     QSFTEALQNELKDTGITITSLMPGPTETNFFDRAHMDDTKVGQMKKDDPAEVAKQGFE
                     ALMKGKETTVASSMKTKTQAAMNKVLPDKVKASAHRRMAEPGSGDE"
     gene            complement(2019..2663)
                     /locus_tag="VF788_02425"
     CDS             complement(2019..2663)
                     /locus_tag="VF788_02425"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX8933054.1"
                     /translation="MEVDYLAMTHAALLSGPLLRRAQRLRRNAASLPRHEYCGIVEEV
                     GSDVTTIRPGQFIIGSFFASDNTCPHCRAGYQTSCQHREYVGAGGAQAEALRVLLADG
                     TLVATPEVPDDGLLSSLLAASDVLGTGWFAAVAAGVRPGSTVAVVGMAPSACSASCLR
                     SSSELSGSPRSRREPRRRQRRTDHRRPRRNRGAAAGIQIQGARYPEHLERLTGQ"
     gene            complement(2666..3487)
                     /locus_tag="VF788_02430"
     CDS             complement(2666..3487)
                     /locus_tag="VF788_02430"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010314399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8933055.1"
                     /translation="MPDEGSPDSHSELAAKIRFDVPHAARIWNYWMGGRDNYEVDCVT
                     GDAVAAVYPEIVTMAQQSRQFLIRAVQFLAGEVGIHQFLDIGTGLPTMQNTHEVAQRI
                     APESRIVYVDNDPLVLVHARALLRNTTSEGVTAYVDADLHDPDLIISDARNVLNFNQP
                     VAVMFMGVLGYVVDFDEMRSIVTRVMAAVPSGSYLVLWDGTNTSAAVIRGSATLAESG
                     AIPYNLRSPEQISQCFEGLEMVDPGLVPITLWRPDIADVGKVEPIDAYGAVARKV"
     gene            3703..4611
                     /locus_tag="VF788_02435"
     CDS             3703..4611
                     /locus_tag="VF788_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8933056.1"
                     /translation="MTGRLEIDGVSKRYGDVLALQEMTFDVRAGELFGFVGSNGAGKT
                     TTMRIVLGVLAADRGEVRWEGRTIDLENRRRIGYMPEERGLYPKMQVGEQLVYLARLH
                     GLPPAAAQRSMQAWTERLGVAAHRDDEVQKLSLGNQQRVQLAAALVHDPALLVLDEPF
                     SGLDPVAVEVMSQVLRDKSAQGVPVLFSSHQLDLVQRLCDRVGIVRNGTMVACGSVDE
                     LRSGTNTQLVVDAPEAPQGWAEDLPGVTVHAQNGTRAVLELSAGVDDQVVLKTALSTG
                     PVREFARRRPSLVDLFRSVVSEETTQ"
     gene            4608..>4893
                     /locus_tag="VF788_02440"
     CDS             4608..>4893
                     /locus_tag="VF788_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933057.1"
                     /translation="MTPAWRPVGLVARREITTRLKSKAFRISTLVLLGLLVGFSVVLR
                     FVGSSSAHPVGFTSQNASLAAPFAAVAAVSGTQVQTSTVPDRATGERLVRV"
BASE COUNT          890 a         1508 c         1653 g          842 t
ORIGIN      
        1 tgcgctgcac ctggccggtg gttcggggga agccaccgcg ccgggaaagc actaagcttg
       61 gccagcagga cgcaacgccc gcacctcgat gaggaggcca gcatggcgat caatcccgcg
      121 actaccgccg tcgtgctgat cgagtaccag aacgacttca cctccgaggg cggcgtcctg
      181 cacggcgcgg tcgaagccgt gatggacaag accgacatgc tggccaacac caaacgggtg
      241 gtcgacgccg cccgagccgc cggcgtgacg gtcatgcacg cccccatcac ctttgccaag
      301 ggatacggcg agctcagcgc tcatccctac gggatcctga agggcgtcgt cgacggtcag
      361 tgcttcgtca aggacagttg gggcgccgcc atcgtggacg agctgtcgcc gcaagagggc
      421 gacatcgtga tcgagggcaa acgcggcctg gacaccttcg cgagcacaaa tcttgatttc
      481 attctccgca acaagggaat cacgacaatc gcgctcggtg gctttctcac caattgttgc
      541 gtcgaatcga caatgcgaac cggctacgag cacggctacc aggtcgtgac cctcaccgac
      601 tgcatggcgg cgacgtcacc cgaagaacac gacaatgcca tcgcctacga cttcccgatg
      661 ttctcgaaac cgacgacctc acaggatttc atcggcgagc tcgcctgaat cggcagttcc
      721 acagcgcagg acaatccagt gccggacggc ggggtgaaac gcctccatgt cgagcggacg
      781 cagcgtgtgg ttgatagtgg tggggtcagc tcgcacaagc gacgctacct tctcccgcag
      841 atcatctagt ggtcgcgcag gcgaaggtaa tcaggccgga agccatggcc ccaggccgac
      901 ttaccagaac cagtgagcag cacggccagc acatcatgac ccggcatctc ctgctccatt
      961 gctcgcagct gctcgtcacg cagctgcgac cagccgaagg tctcggcagc caccgttgga
     1021 gctcgtcacg cgtcgtccgt cgcacgagca tgggcagtat cccgagctgc ggcaagggaa
     1081 accggtggga ttgcgatacg cgtcacttag caggatcgct tcgaggaagc tggtgtagca
     1141 ggggcgaggc cgggtaatcc cctgacatga ctgattctcg cccacttgct ctagtgaccg
     1201 gagcctccag tggtatcggc ttggagttgg ccaagcaatt cgttgaacat gggttcgatc
     1261 tactggttaa tgctgaggac ggtggcctcg acaccgtcgc ggttcagctg gcctctaccg
     1321 gtgccagcgt tcagccgatc cgagcggatc tgcgcactat cgagggtgtc gagcggttgt
     1381 gggagcagat cgctgcgacg ggtcgcccgc tggatgtggc cgcgctgaat gctggcgtcg
     1441 gggagggtgg tccgtttctg gagactgatc tgtcggccga gctggagatt atcgacgtca
     1501 atgtgcggtc tacggtggtg ctagccaagc gggtgctgcg cgcgatggct gcgcgcgacg
     1561 agggtaaagt gttgattacc tcctcgatag cctccacaat gccgggctcg tttcaggcgg
     1621 tctacaatgc atcgaagtca ttcttgcagt cgttcaccga ggcgttacaa aatgaattga
     1681 aagacactgg catcaccatc acctccctga tgcccggccc gacggagacg aacttcttcg
     1741 accgcgcgca catggatgac accaaagtcg gacagatgaa aaaagacgat ccagctgagg
     1801 tggcgaagca gggtttcgag gcgttgatga agggcaaaga aacgaccgtc gcctcatcga
     1861 tgaaaactaa gactcaagcg gccatgaata aggtgctgcc agataaggtc aaggcctccg
     1921 cgcaccgccg gatggccgag cccggctccg gagatgagta aactctgcac gaacgggcgg
     1981 tgtctggcga ctgcggtctt ccgtggcctt gcccggtctc attggccggt cagtcgttcg
     2041 aggtgctccg ggtagcgggc tccctggatc tggatgccgg ctgcggcgcc tcgatttcgt
     2101 cgaggtcggc gatggtcagt tcgacgttga cggcgccgag gttctcgtcg agagcgcggt
     2161 gatccgctca gctccgagct gcttcgcaga caggacgccg agcaggccga gggcgccatc
     2221 cccacaaccg cgacggtcga gccgggccgg acaccggcgg cgacggcggc gaaccagccc
     2281 gtgccgagaa catcggaggc ggccaggagg ctagacagca acccgtcgtc gggcacctcc
     2341 ggggtggcga ccagggtgcc gtcggcgagc aggacacgca gcgcttcggc ctgcgcgccg
     2401 cccgcgccaa cgtactcgcg gtgctggcag gaggtctggt agccggcccg gcagtgcggg
     2461 caagtgttgt cggaggcgaa gaagctgccg atgatgaact ggcccggcct gatggtcgtg
     2521 acgtcgctgc cgacctcctc gacgatgccg caatactcgt gtctgggtag agatgcagca
     2581 ttgcgccgaa gccgctgcgc gcgacggaga agcggcccag agagtaacgc tgcatgggtc
     2641 atggctagat agtcaacttc caacctcaca ccttgcgcgc caccgcgccg taggcgtcaa
     2701 taggctcgac cttgccgaca tcggcgatgt ccggccgcca cagcgtgatc ggcaccaagc
     2761 caggatccac catctccaga ccctcgaagc actggctgat ctgctcgggg ctgcgcaggt
     2821 tgtagggaat ggctccgctt tccgcgagcg tcgcactgcc cctgatgacg gccgcgctgg
     2881 tgttggtccc gtcccacagc accaggtagc tgcccgatgg gacggcggcc atcacccggg
     2941 tcacgatgga tcgcatctcg tcgaagtcga ccacatagcc cagcacgccc atgaacatga
     3001 ccgcgaccgg ctggttgaag ttcagcacgt tgcgagcatc cgagatgatc agatccgggt
     3061 cgtgcaagtc ggcgtctaca taagcggtca caccctctga tgtggtgttg cgcagcaggg
     3121 cgcgggcgtg cacgagcacc agcgggtcgt tatcgacata gacgatccgg gactcgggcg
     3181 cgatccgctg agcgacctcg tgggtgttct gcatcgtggg cagcccggtg ccgatgtcga
     3241 ggaactgatg gatcccgacc tcgccggcca ggaactgcac ggcgcggatg aggaactgcc
     3301 gggattgctg ggccatggtg acgatctccg gatacaccgc agcgaccgca tcaccggtga
     3361 cacagtccac ctcgtagttg tccctgccgc ccatccagta gttccagatt cgtgccgcat
     3421 gcggcacatc aaacctgatc ttggcggcca gctcggaatg cgagtccggg gacccttcgt
     3481 cgggcatgtc aacgctccaa tgtcttcagg tcacctcaac ggttacggca catgcttcgc
     3541 acattgtcac ggtaggcaca caatgcgtga cctccgaact ggctgagcgc ctcgaaacct
     3601 ctgctgaact cggcggtaac tctgtcggtc gccagcccgc aggctggggc ggcgcaggta
     3661 gtgtcgaggg ccggggcagc gccagcccgc ggaaggacgt ggatgaccgg ccgattggag
     3721 attgacgggg tctccaagcg ctacggtgat gtgctcgcgt tgcaggagat gactttcgac
     3781 gtccgcgctg gtgagctgtt cggtttcgtg ggcagcaacg gcgctggtaa gaccaccacg
     3841 atgcggatcg tgctcggggt gctggccgcc gatcggggcg aggtccggtg ggagggccgg
     3901 acgatcgacc tggaaaaccg acggcgcatc gggtacatgc cggaggaacg tgggctctat
     3961 ccgaagatgc aggtcggtga gcagctggtg tacctagcac ggctgcatgg cctacccccc
     4021 gcggcggcgc agcggtcgat gcaggcatgg accgaacgcc tcggcgtggc cgcgcaccgc
     4081 gatgacgagg tacagaagct gagtctgggc aaccagcagc gggtccagtt ggccgcggcg
     4141 ctggtgcacg acccggcgct gctcgtcctc gacgagccgt tctccggcct ggacccggtc
     4201 gcagtggagg tcatgagcca ggtgctgcgg gacaagagtg ctcagggcgt gccggtgctg
     4261 ttctccagcc atcagctgga cctggtgcag cggctgtgtg accgggtcgg catcgtccgc
     4321 aacggaacga tggtggcctg cggctcggtg gacgagctgc gcagcggcac caacacgcag
     4381 ctggtggtgg acgcgccgga ggccccgcag ggttgggccg aggatttgcc cggcgtgacg
     4441 gtgcacgctc aaaacggcac ccgcgccgtg cttgagctat cagccggagt ggacgaccag
     4501 gttgtgctga agacggcgct gagcaccggg ccggtccgcg agttcgcgcg tcggcggccc
     4561 tcgctggtgg atctgttccg cagcgtggtg agcgaggaga cgacgcagtg accccggcgt
     4621 ggcggccggt tgggttggtg gcccgccgcg agatcaccac ccgcctgaag tccaaggcgt
     4681 tccggatcag cacgctcgtc ctgctgggcc tgctcgtggg attctccgtc gtgttgcggt
     4741 tcgtaggcag ctcctcagcg catcccgtgg ggtttaccag ccagaacgcc tcgctggccg
     4801 cgccgttcgc ggcggtggcc gcggtgtcgg gcacgcaggt gcagacctcg acggtgcccg
     4861 atcgggccac tggtgagcgc ctggtccggg tgg
//
LOCUS       DASVXZ010000126         4163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_820687, whole genome shotgun sequence.
ACCESSION   DASVXZ010000126 DASVXZ010000000
VERSION     DASVXZ010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4163
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_820687"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1394
                     /gene="ftsY"
                     /locus_tag="VF788_02445"
     CDS             <1..1394
                     /gene="ftsY"
                     /locus_tag="VF788_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEX8933058.1"
                     /translation="APPKPPADEPPAAQASAPAPPKPPVDEPRAAPESPTPARPRASA
                     PAPSRPPAQAPSRPPKPKPKPKPRRKPAEAAPPTDLAPPPDVAPAAPVKPPQPVEAAP
                     TPAPAEPAPPETAPAQPAPAAVAPAEPVPVEPVPAEPVDAEPAGALVEPIDAPAGRLV
                     RLRGRLARSRSAFGQSLLGLLGAGDLDEDSWVDVEDTLLLADLGAATTTEIVDRLRAE
                     LAARGVRTAEQARAALRDVLIEALRPELDRAVRALPHNGADGASVPGVVLIAGVNGTG
                     KTTTTGKLARVLVADGRRVLLGAADTFRAAAVEQLATWGERAGAEVVRGAEGADPASV
                     AFEAVKRGSADGVDTVLIDTAGRLHTKTGLMDELGKVKRVVSKQTEVDEVLLVLDATT
                     GQNGMMQARVFREVVDVTGIVLTKLDGTAKGGIVFHVQRELGVPVKLVGLGEGVDDLA
                     PFEPAAFVDALLD"
     gene            1579..2952
                     /locus_tag="VF788_02450"
     CDS             1579..2952
                     /locus_tag="VF788_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX8933059.1"
                     /translation="MPDTGDTAWMLASSALVLLMTPGLAFFYGGMVRSKSVLNMVMMS
                     MSAMGIVGVLWVLYGYSEAFGNDVGHGLLGNPFEHVGLHGLFGGTYVATPGGPKVDIP
                     LVGTIPATVFVAFQAMFAIITVALVSGAVADRLRFGPWLAFAALWATLIYFPVAHWVF
                     SFDGVSAPVGGWIANRLKAIDFAGGTAVHINAGAAGLALCLVLGRRRGWPREAMRPHN
                     LPLVMLGAGLLWFGWFGFNAGSAVASNGVAGITFINTTVATCAAMLGWLLIERIRDGR
                     PTSLGAASGVVAGLVAITPSCSSVSPLGAIAVGAIAGAVCALAVSIKFRFGFDDSLDV
                     VGVHLIGGLVGTLLVGFFATAAAPAAVNGFFYGGGFDQLGRQAVAAFAVMIFSFVGAL
                     IIALVLKYTIGLRVDGEAEQVGIDETEHAEAGYELSSILTGTGLSNSKPVQAPTGKVP
                     ASAGQEG"
     gene            2959..3297
                     /locus_tag="VF788_02455"
     CDS             2959..3297
                     /locus_tag="VF788_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX8933060.1"
                     /translation="MKLVTAIVKPFTLEDVKSALERIGVLGMTVSEVQGFGRQKGHTE
                     IYRGAEYSVDFVPKIRVEVVVDEAQVDKTIDALVDAARTGKIGDGKVWVTPVETVVRV
                     RTGERGLDAL"
     gene            3549..>4163
                     /locus_tag="VF788_02460"
     CDS             3549..>4163
                     /locus_tag="VF788_02460"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334835.1"
                     /note="catalyzes the uridylylation or deuridylylation of
                     the PII nitrogen regulatory protein; also involved in
                     adenylylating and deadelnylyating GlnK; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HEX8933061.1"
                     /translation="MARSGALPRGGGPDASAEDLVKARGALLGGNSRHRQLSAPALRS
                     ALADLYELWLTSRCAAAGVGCGTALVAIGALGRREVVPYSDLDLVLLHDGKRDVAELA
                     DSLWYPLWDARVELDHSVRTVGQAVQVAATDLRAALGLLDARLIAGDDALFTAMDTAV
                     RRAWRSGIRTRLDELAESAQQRWSLSGDIAHRVEPDLKSGHGGLR"
BASE COUNT          646 a         1327 c         1480 g          710 t
ORIGIN      
        1 cggcgccgcc gaaaccacct gcggacgagc cacctgcggc acaggcgtcc gcacccgcac
       61 cgccgaaacc gcctgtggac gagccacgtg cggcaccgga gtcacccact cccgcccggc
      121 cacgggcttc ggcgcccgca ccgtcgagac cccctgccca ggcaccatcc agaccgccga
      181 agccgaagcc gaagccaaag ccgaggcgga agccagcgga ggccgccccg ccaaccgacc
      241 tggccccgcc gccggatgtg gctcctgcgg ctccggtcaa accgccgcaa cctgtcgaag
      301 cggccccgac gccggctcca gcggagccag cgcccccaga aaccgctccc gcgcaaccgg
      361 ctccggcagc ggtggctccg gccgaaccgg tgcccgtcga accggtgcct gcagaaccgg
      421 tggatgcaga accagcaggt gcgctggtcg aaccgatcga tgcgccggcc ggtcggttgg
      481 tgcggctacg cggcaggctg gcccgttctc gatcggcgtt cggccagagc ctgttgggcc
      541 tactcggcgc gggagatctg gacgaggact cgtgggtcga cgtggaggac accctgttgc
      601 tcgccgatct cggcgcggct actaccaccg agatcgtgga ccggctgcgc gccgaacttg
      661 ctgcgcgggg tgtccggacc gctgagcagg ctcgtgcagc gctgcgggat gtgctgatcg
      721 aggcgctgcg cccggagctg gatcgggccg tgcgtgcgtt gccgcacaat ggcgccgacg
      781 gcgcgagcgt ccctggcgtg gtactgatcg ctggcgtgaa cggcaccgga aaaaccacta
      841 ctaccggcaa gctggcgcgc gtgttggtcg ctgacggccg gcgggtactg ctaggtgccg
      901 cggacacctt ccgcgccgcc gcagtcgagc agttggccac ctggggtgag cgtgccggtg
      961 cggaggtcgt gcgcggcgcc gagggcgccg acccagccag cgtggcattc gaggcggtca
     1021 aacggggcag cgcagatggg gtggacacgg tcttgatcga cactgccggt cggctgcaca
     1081 ccaagaccgg cctgatggac gagctcggca aggtcaaacg ggtggtgtcc aagcagaccg
     1141 aggtggacga ggtgttgctc gtcctggacg ccacgaccgg ccagaacggg atgatgcagg
     1201 cgagggtgtt ccgggaagtc gtcgatgtga ctggcattgt cctgaccaag ctggacggta
     1261 cggccaaggg tggcattgtc ttccacgtgc agcgagagct cggggtgcca gtcaaattgg
     1321 tgggtctcgg cgaaggcgtc gacgatcttg cgccattcga gcccgccgcc tttgtggacg
     1381 ctctgttgga ctaaatttcc ggccacacgc acacggccag ccaacgtcgg ccgtgccggt
     1441 aacccggacg tagcaagaga gccaccacag ttaacgtggc tgaaacacag cgtgcctccg
     1501 gtcgaaacac ctgctgctca ctcttttcac acgtgccacc cgatcgtggt gcggagctcg
     1561 acacagagga gtgaacccgt gccagacact ggtgacactg cctggatgct cgccagctcg
     1621 gccctggtgc tgctgatgac tccgggcctg gcgttcttct acggcggcat ggtccgctcg
     1681 aagagcgtcc tcaacatggt aatgatgagc atgtccgcga tggggatcgt gggcgttctc
     1741 tgggtgctgt atggctactc agaggcattc ggcaacgacg tcggccacgg cctgttgggc
     1801 aacccgtttg agcacgtggg attacatggt ctgttcggcg gtacctacgt cgctactccc
     1861 gggggcccca aggtcgacat ccctctggtc ggaaccatcc cggcgacggt gttcgtcgcg
     1921 tttcaggcga tgttcgcgat catcactgtg gcgctggtct cgggcgcagt agccgaccgg
     1981 ctgcggttcg ggccgtggct ggcgttcgcc gcgctatggg cgacgctgat ctacttcccg
     2041 gtcgcgcact gggtgttctc cttcgacggc gtcagtgccc cggtcggcgg ctggatcgcc
     2101 aaccgcctca aagcgatcga cttcgctggc gggacggccg tgcacatcaa tgcgggggcc
     2161 gcaggcctgg cgttgtgcct ggtgctcggc aggcgccgtg gctggccgcg cgaggcgatg
     2221 cggccgcaca acctgccgtt ggtgatgctt ggcgctggct tgctctggtt cgggtggttc
     2281 ggtttcaacg ctggatcagc tgtcgcctcg aacggtgtcg cgggcatcac gttcatcaac
     2341 accactgtgg caacctgcgc ggccatgctg ggttggttgc tgattgagcg catccgggac
     2401 ggccggccca ccagcctcgg tgccgcgtcc ggtgtcgttg ccggtctggt cgccatcact
     2461 ccgtcgtgct cgtcggtttc gccgctcggg gcgatcgcgg tcggagcgat tgccggcgcg
     2521 gtatgcgcgc tggcggtcag catcaagttc cggttcggct tcgacgactc gctcgatgtg
     2581 gtcggtgtgc acctcatcgg cggtctggta ggcacgctcc tggttggttt cttcgccacc
     2641 gcggcggcac ccgccgcagt gaacggcttc ttctacggtg gaggcttcga ccagctaggg
     2701 cgccaagctg tggcggcgtt cgcagtgatg atcttctcct tcgtcggagc cctgatcatc
     2761 gcgctggtgc tgaagtacac catcggtctg cgggtggacg gcgaggccga gcaggtcggt
     2821 atcgacgaga ccgagcacgc tgaggcgggc tacgaactca gctcgatcct cacggggacc
     2881 gggttgtcga acagcaagcc cgttcaggcg cccacgggta aggtcccggc ctcggccggt
     2941 caggaagggt gagtggcgat gaagctggtg accgcgatcg tcaagccgtt cacgctggag
     3001 gatgtcaaga gcgccctcga gcgcatcggg gtgctcggca tgacggtcag cgaggtacag
     3061 ggcttcggcc ggcagaaggg gcacaccgag atctaccggg gcgcggagta ctcagtcgac
     3121 ttcgtaccga agatccgggt agaggtcgtg gtggacgagg cgcaggtgga taagaccatt
     3181 gatgcgcttg tcgacgcggc ccgcaccggg aagatcggag acgggaaggt ctgggtgacc
     3241 ccggtggaaa ccgtggtccg ggtgcgaacc ggggaacgcg gtctggacgc gctctgagcc
     3301 tcgccgggaa gcttggttgc cggtgggcac cggtgcactc gccggtgccc accaggcgtt
     3361 tttgaagtcg acgaaacctg atcgtaacgt gtctggcgcc agttcacgtc gcggaaaccg
     3421 cgcgttccag cggctgaaac atacctcgcg aaacctcagt agtgaggccg acggcaccag
     3481 agcacaccac ctcgccgcga cgtcgcgccg ccgttggtgg ggctgacggc cagatggaag
     3541 gggcggcgat ggctcgctct ggtgccctgc cccgcggcgg cggcccggat gcctccgcgg
     3601 aagatcttgt caaggctcga ggcgctctgc tcggcgggaa ttcccggcat cgccagctga
     3661 gcgcgccggc actgcgatcg gccttagcgg atctctacga gctgtggtta acctcccggt
     3721 gcgcagcggc gggtgtcggc tgcggcaccg cgctggtggc catcggtgcc ctaggacgcc
     3781 gtgaggtggt tccgtactcc gatctcgacc tggtgctgct acatgatggc aagcgtgacg
     3841 tggctgagct cgcggactca ctgtggtacc cgctgtggga tgcccgggtc gagctggacc
     3901 acagtgtacg aacggtcggg caggcggtgc aggtggcggc taccgactta cgtgccgcac
     3961 tcggtttgct cgacgcacgc ctgatcgccg gggacgacgc gctgttcacc gcgatggata
     4021 ccgcggtgcg gcgcgcctgg cgcagcggca tccgcacccg actggacgaa ctcgccgagt
     4081 cggcacagca gcgctggtcg ctcagtggcg acatcgcgca ccgggtggaa cccgacctga
     4141 agagcggtca cgggggattg cgg
//
LOCUS       DASVXZ010000127         5458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_13532, whole genome shotgun sequence.
ACCESSION   DASVXZ010000127 DASVXZ010000000
VERSION     DASVXZ010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13532"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VF788_02465"
     CDS             complement(<1..728)
                     /locus_tag="VF788_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEX8933062.1"
                     /translation="MTEIERHNYDVVVIGAGGAGLRAAIEARELGKRTAIICKSLFGK
                     AHTVMAEGGIAASMGNANPRDSWQVHFRDTMRGGKFLNNWRMAELHAKEAPQRVWELE
                     TYGALFDRTKDGKISQRNFGGHEYPRLAHVGDRTGLELIRTLQQKIISLQQEDFAQHG
                     DYEANLKVFAECTITELLKEGDAIAGAFGYWRETGRFVRFDAPAVVLATGGIGKAFKV
                     TSNSWEYTGDGHALALRSGAALIN"
     gene            complement(740..1504)
                     /locus_tag="VF788_02470"
     CDS             complement(740..1504)
                     /locus_tag="VF788_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933063.1"
                     /translation="MSARTLRTDRWWVSPAVTALVLGAFIIYTTIRLFMRADYWVGAY
                     HYLTPLYSPCLSDSCAPGSSHFGTPLPAFPLALPLPILIFPILAGFRASCYYYRKAGY
                     RAFLLSPPGCAVTEPAKKYTGETRLPLIFQNLHRYFFYLASALLLINTYDAVLAFFPA
                     DGGFGVGLGSLILLVNVTMLWLYSLSCHACRHIFGGRLRHFSRHPVQYWLWTQLSKLN
                     GRHMQFAWTSLITVMLTDFYIMAVAAGWITDLRLFN"
     gene            1768..2799
                     /locus_tag="VF788_02475"
     CDS             1768..2799
                     /locus_tag="VF788_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX8933064.1"
                     /translation="MQLQQLVYFLAVAHTRHFTRAAELTHVAQPSLSKQIHCLEGELG
                     SELFHRARGNVRLTPAGETLIPFAKRILADVETARLEVHELAELRRGRLRLGATPSLC
                     TGPLAHALAGFRERYPGIQLIIDESGSRDLVRQLAEGAIDLAMITSPVHRGDPTLATI
                     PILREQLTVAVPNSMNLQLGSFRIEDLRDRPLVMFREGYDLRSMTLSACQRAGFQPRF
                     AIEGGEMDAVLSFVEAGLGIAVVPSMVVENRPKLRAVPFAPPVPIRTIALAHRTDVRP
                     TRAAEEFRSTLLQLLSGTHTQGRLPAGVEFICPREPASAQSGHGSISAGQLPGPSSSR
                     TTCHASHSE"
     gene            complement(2712..3269)
                     /locus_tag="VF788_02480"
     CDS             complement(2712..3269)
                     /locus_tag="VF788_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019806335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HEX8933065.1"
                     /translation="MSQRSSGDYGSATEECSDDDVMSPAAEAQQICLRLLTARPRSRV
                     ELADALRKRGIHEEVSRFVLDRLEELGLVNDAALAEAAVYSGHRRRGLGRRALSSELQ
                     RRGISEGVAREAVATVAPEDEEQRARELVQRKLRTTTVRDNSLARKLGAMLVRKGYSE
                     WLAWHVVRDELGPGSCPAEIEPCPD"
     gene            complement(3304..4344)
                     /gene="recA"
                     /locus_tag="VF788_02485"
     CDS             complement(3304..4344)
                     /gene="recA"
                     /locus_tag="VF788_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEX8933066.1"
                     /translation="MASAPDREKALGIALAQIEKQCGKGSVMRLGEEGRAPVEVIPTG
                     SIALDVALGIGGLPRGRVVEVYGPESSGKTTIALHAVANAQRSGGIAAFIDAEHALDP
                     DYAKALGVDTDALLVSQPDTGEQALEITDMLIRSGALDVVVIDSVAALVPRAEIEGEM
                     GDAHVGLQARLMSQALRKLTGALSNSGTTAIFINQLREKVGVFFGSPETTTGGKALKF
                     YASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKCAPPFKQAEFDILYGHGISKEGSLI
                     DLGVEQGIVRKAGAWYTYEGDQLGQGKENARTFLADNPDIAAEIEKRIKDKLGIGAKL
                     DADQTVPAPVDF"
     gene            complement(4595..4789)
                     /locus_tag="VF788_02490"
     CDS             complement(4595..4789)
                     /locus_tag="VF788_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3046 domain-containing protein"
                     /protein_id="HEX8933067.1"
                     /translation="MRITHLRQRMDEEFGPVRAAALAHDHVFADLGGRTVNEALEAGI
                     DTKQVWAVVCATFDVPEERR"
     gene            4830..4952
                     /locus_tag="VF788_02495"
     CDS             4830..4952
                     /locus_tag="VF788_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933068.1"
                     /translation="MFSWDDPTGLSSTAGRLVILFCLLSSLLVLIRWWWQQRGR"
     gene            complement(5008..>5458)
                     /locus_tag="VF788_02500"
     CDS             complement(5008..>5458)
                     /locus_tag="VF788_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX8933069.1"
                     /translation="VDFTAREVREFAGEHCRYRLSTSADLVATNLARREVDWSNSLFL
                     SLRFRASRIGQYNEFVYIFFKCLSPERIDYVENWYDERNDDGTEINLDGWRVQRRCPH
                     LRADLDKFGSVSDGILTCALHGWRFDLSSGRCLTSAGHQIRATQLTS"
BASE COUNT         1008 a         1765 c         1649 g         1036 t
ORIGIN      
        1 atattgatca gcgcggcgcc gcttcgtagc gccagcgcgt gcccgtcgcc agtgtactcc
       61 caggagttgc tggtgacctt gaaagccttg ccgatgccgc cggtggccag caccacggcc
      121 ggtgcgtcga atctgacgaa gcgcccggtc tcgcgccagt agccgaacgc tccggcaatc
      181 gcgtcaccct ctttgagcag ctccgttatg gtgcactcgg cgaatacctt gagattggcc
      241 tcatagtctc cgtgctgggc gaaatcctcc tgttgcagcg agatgatctt ctgctgtaac
      301 gtgcggatta gttcaagacc cgtgcggtcg cctacgtgcg ccagccgcgg atattcgtgc
      361 ccaccgaagt tgcgctggct gatcttgccg tctttggtgc ggtcgaaaag tgcgccgtag
      421 gtctccagtt cccacactcg ctgcggcgct tctttcgcgt gcaactcggc catccgccag
      481 ttgttgagga acttgcctcc acgcatagtg tcgcggaaat gcacttgcca gctgtccctt
      541 gggttggcgt tgcccatcga cgccgcgatg ccaccttccg ccatgacggt gtgggccttg
      601 ccgaacaacg atttgcagat aatggcggtg cgcttaccca gctcgcgggc ctcgatggcg
      661 gcccgcaggc cggcgccacc ggcaccgatc accacgacgt catagttgtg gcgctcgatc
      721 tcggtcatcg ggctcctcgt cagttgaaca ggcgcaggtc ggtgatccag cccgcggcaa
      781 cggccatgat gtagaagtcc gtgagcatca ccgtgatcag cgacgtccag gcgaactgca
      841 tgtggcgccc gttgagcttg gacagttggg tccagagcca gtactgcacg ggatgcctgg
      901 agaagtgtct gagccgacct ccgaagatgt gccggcatgc gtggcacgat agcgagtaca
      961 gccacaacat cgtgacgttg accagcagga tcagcgaacc caggcctacc ccgaaaccac
     1021 catcggcggg aaagaacgcc agcactgcat cataagtgtt gattagcagc agcgcggatg
     1081 cgaggtagaa gaaataccgg tgcaggttct gaaaaatcag cggtaggcgg gtctcaccgg
     1141 tgtacttctt cgctggctct gtgactgcgc atccgggcgg cgagaggagg aacgcgcgat
     1201 agccggcctt ccgatagtag tagcagctcg ctcggaatcc cgcgagaatg gggaatatca
     1261 ggatcggtag tggcagggcc agtggaaacg ccggcaatgg agtgccgaaa tgtgaagaac
     1321 ccggcgcgca cgaatcgctc aaacacggcg agtacagagg agtgaggtag tggtacgcac
     1381 caacccagta atcagcccgc atgaagagcc taatcgtggt gtagatgatg aatgcaccca
     1441 gcacgagcgc ggtcaccgcg ggtgacaccc accaccgatc ggttcgcagg gtccgcgcgg
     1501 agatcgcagc tcgcccggac tgtgtcccac cgggctgagt cccgccgagt ggggcaaccc
     1561 ccgagggcgg aggcgaggaa gtcgtggtca tgaggtcgat tcgggtcgga gggatgccta
     1621 acaacaacga tgtcgcacgc gatatatcgc aactgcactc tcgcggcgag tcggtgaccc
     1681 tcgcgacgcc aagcgcgaga gtaggcgggt ccatggcaca ggtccaagat atggtgacgc
     1741 tggtctcgat agcgataagc tatcggtgtg cagctccaac agctggtgta tttcttggcc
     1801 gtcgctcaca cccggcactt cacccgggcc gccgagctca cccatgtggc tcagccgtcg
     1861 ctgagcaaac agatccattg cctggaggga gagcttggca gcgaactgtt ccaccgcgcc
     1921 cggggcaatg tgaggctcac accagccggc gagacactga tccccttcgc caagcgaatc
     1981 ttggctgacg tcgaaaccgc tcggttagag gtgcacgagc tggccgagct acgccgcggg
     2041 cggctcaggc tgggtgctac ccccagcttg tgcaccgggc cactggcgca cgcgctcgcc
     2101 ggcttccgcg agcgataccc cggcatccag ctcatcatcg atgaaagtgg atcacgtgat
     2161 ctggtccggc agctcgctga aggagccatc gacctggcaa tgatcacctc accggtgcac
     2221 cgaggggatc ccaccctggc taccatcccg atccttcgcg agcagctcac ggtcgccgtg
     2281 ccgaacagca tgaaccttca actcggctca ttccgcatag aggacctccg tgaccgcccc
     2341 ctggtcatgt tccgtgaggg ttacgacctt cgatcgatga ccctctcggc ctgccagcga
     2401 gcaggattcc aaccccgttt cgccatcgaa ggcggcgaga tggacgcggt actcagcttc
     2461 gtcgaagctg gcctcggaat cgctgtggtg cccagcatgg tcgtggagaa tcgtccaaag
     2521 cttcgagctg tgcccttcgc acctcccgtg ccgatccgga cgatcgcgct tgctcaccgc
     2581 accgacgtac gtccaactcg agccgctgag gagttccgct ccacgctgtt acagttgctc
     2641 agcggtacac acactcaggg ccgtctgcct gctggcgtcg agttcatctg tccacgtgaa
     2701 ccagccagcg ctcaatccgg acatggctcg atctccgcag gacagcttcc cggaccaagc
     2761 tcatctcgca ccacatgcca tgccagccac tcggagtaac ccttgcggac cagcatcgca
     2821 cccagtttgc gggccaaact gttgtcccgc acggtggtgg tacgtaactt gcgctggacc
     2881 agttcgcgag cccgctgttc ctcatcttct ggcgctaccg tcgcgaccgc ctcgcgggca
     2941 accccttcgg aaattccccg gcgctggagc tcgctgctca gcgcgcgcct tcccaggcca
     3001 cgacgacggt ggccggaata aaccgctgcc tcggcgaggg cagcatcatt caccaggcct
     3061 agctcttcca ggcggtcgag cacgaacctg ctgacttcct cgtgaatccc gcgctttcgc
     3121 agcgcatcgg ccagctcaac ccggctgcgt ggccgcgcgg tgagcagccg cagacaaatt
     3181 tgctgcgcct ccgccgccgg actcatgacg tcgtcatccg aacattcctc agtcgccgac
     3241 ccgtagtcgc cagagctgcg ctggctcatc gcagctctgg caccgtcgta tgacttcggc
     3301 acatcagaag tccaccggag cgggcacggt ctgatctgcg tccagctttg ccccgatgcc
     3361 tagcttgtcc ttgatccgct tctcgatctc agcagcgatg tcggggttgt cggcaaggaa
     3421 cgtgcgtgcg ttctccttgc cctggcccaa ctggtcaccc tcataggtgt accaggcacc
     3481 tgctttccga acgatgccct gctccacgcc gagatcgatg agcgagccct ctttgctgat
     3541 tccatgaccg tatagaatat cgaattctgc ttgtttgaat ggcggtgcgc atttgttctt
     3601 caccaccttg acgcgggtcc ggttgcctac tgcatccgat ccgtctttga gcgtctcaat
     3661 acggcggata tccagccgca ccgaggcata gaacttcagc gccttgccac ctgtagtggt
     3721 ctccggggag ccgaagaaga ccccgacctt ctctcggagc tggttgatga agattgccgt
     3781 ggtgcccgag ttgctcagcg caccagtgag ctttcgcagc gcctggctca tcagccgggc
     3841 ctgcagcccg acgtgcgcgt cccccatctc gccctcgatc tccgccctcg gcacgagggc
     3901 agctactgag tcaatgacca ccacatccag cgcgccagag cggatcagca tgtctgtgat
     3961 ctccagtgcc tgttccccgg tgtcgggctg ggagaccagc agagcgtcgg tgtccactcc
     4021 gagcgccttg gcgtagtccg gatccagcgc atgctcggcg tcgataaacg cggcgatccc
     4081 tccgctccgc tgagcgttgg ctaccgcgtg cagcgcgatc gtcgtttttc cggaggattc
     4141 cgggccgtac acctcgacta cccggccgcg aggcaagcca ccgatgccta aggccacgtc
     4201 caaggcgatg gagccggtgg gaatcacctc gaccggagcg cggccctcct caccgaggcg
     4261 catcaccgag cccttgccgc actgcttctc gatctgagcc aaggcgatcc cgagtgcctt
     4321 ctcccgatcc ggtgctgatg ccatctgacg atccacctcg ctggttgggt tcttctgggt
     4381 cggcgacgac gctaggcggt aggactgaca ctttgcgacg gcacacggcc ggatctgtgg
     4441 ataaggggtc cgactgtgga caacagccta gacgaacacg tgttcgatgg cttcggtgac
     4501 acgccgacgt gctagcttcc cgcacccctt ggtgcacacc agaacccgac acaccgagca
     4561 cgagaggccg acacgccagg agtaggaaac tggatcagcg tcgctcttcg ggaacgtcga
     4621 aggtggcgca cacaactgcc cagacctgct tggtatcaat acccgcctcc agggcttcgt
     4681 tcaccgtccg tccaccgaga tcggcgaaca cgtggtcatg ggccagtgca gccgccctga
     4741 ccggaccgaa ctcctcgtcc atccgctgcc ggagatgggt aatccgcatt tgtccagatt
     4801 aggtagctgg tctcagctat cgtaatgggg tgttctcctg ggacgacccg accgggctgt
     4861 cctccactgc cgggcgcctg gtgatccttt tttgcctgct ctcctccctg ttggtgctca
     4921 tccggtggtg gtggcagcag cgaggtcgct gatcggccat acggccacga cacggtgggg
     4981 cgcacactgg cgaacatgct gtggagctca gctcgtcaac tgggtggcac gaatctggtg
     5041 gcccgccgag gtgaggcagc gacccgagga aaggtcgaag cgccagccgt gtagagcgca
     5101 ggtgaggatg ccatctgaca cgctgccgaa cttatccagg tcggcgcgca agtgtgggca
     5161 gcggcgttgc acccgccagc catccaggtt gatctccgtg ccgtcgtcgt tgcgctcgtc
     5221 gtaccagttc tcaacatagt cgatgcgctc gggcgaaaga catttgaaga agatgtagac
     5281 gaattcgttg tactgaccga tccggctggc ccgaaaccgt agggacagaa acaggctgtt
     5341 cgaccagtcc acctcacggc gggcaaggtt ggtggcgacc agatccgccg aggtggacag
     5401 ccggtagcgg cagtgctcgc cggcgaactc gcgcacctcg cgcgcagtga agtcgacc
//
LOCUS       DASVXZ010000128         2407 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_282634, whole genome shotgun sequence.
ACCESSION   DASVXZ010000128 DASVXZ010000000
VERSION     DASVXZ010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282634"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..1057
                     /locus_tag="VF788_02505"
     CDS             224..1057
                     /locus_tag="VF788_02505"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEX8933070.1"
                     /translation="MNLNTITEVRRVTGNGYKDFEWQEGDSWLAGGTWLFSEPQPHLR
                     RLVDLQGLGWEPLVINEQGLQISPTCTIAQLDALEAPPEWTAAPLIRQCCHSFLASFK
                     VWNTATVGGNICMSLPAGPMISLTVALEGVYTLRLRDGSERRVAAEEFVTGNNENILQ
                     PGDLLRSIELPISALQKRTSFRRMALTHLGRSTALLIGTLSPQDGTFMLTVSASTKRP
                     IRLSFDQVPDTRSLHERLRETIADSMYHDDVHGAPDYRKHLTYHFAEEIRGELSGIQA
                     A"
     gene            1068..2407
                     /locus_tag="VF788_02510"
                     /pseudo
     CDS             1068..2407
                     /locus_tag="VF788_02510"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
BASE COUNT          457 a          755 c          773 g          422 t
ORIGIN      
        1 ggaggaatgt ggaattcacg ttgttttagc gggttgagac gcccgttgcc cgcttgacct
       61 gacgagtgta tagtgggctg cgttcggcgc aacccactac ggacggactg cctgagtgga
      121 tgacaggctg ccgcttcgac cggtgtgact ggtctcgacg tgtccattcc aaccgtggat
      181 gcgccagcga gtgatcggct gcaaggtgag gaggacttgc cacgtgaacc tgaacactat
      241 caccgaagtt cggcgtgtaa ccggaaacgg atacaaggat ttcgagtggc aggagggaga
      301 cagctggctg gccggcggca cctggctctt ctccgaaccg cagccgcatc tgcgccggct
      361 ggtggacctg cagggccttg gctgggagcc cctggtgatc aatgagcagg gactccagat
      421 atcccccacc tgcacgattg ctcagttgga tgccctggaa gcgcctccgg agtggacggc
      481 cgcgccgcta atccgccagt gctgccactc attcctggcc tctttcaagg tgtggaacac
      541 ggcgactgtt ggcggcaaca tttgcatgtc gttgccggcg ggcccgatga tctcgcttac
      601 ggttgcacta gaaggcgtct acaccctccg gctgcgggat ggcagcgaac gtcgcgtggc
      661 tgcggaagaa ttcgtcaccg gcaataatga gaacattctc caaccgggtg acttgctgcg
      721 ttcgattgag ctgccgatct cggccctgca aaagcgaacg agcttccgtc gcatggcgct
      781 gacgcacttg ggccggtcga ccgcgctgct gatcggtaca ctctccccgc aggatggcac
      841 gttcatgctg accgtctccg cctcgacaaa gcggccgata cggttgagct tcgaccaggt
      901 gccggatacc cgaagcctgc acgagcggct gcgagagacc atcgctgact ccatgtatca
      961 cgatgacgtc cacggagcac cggactatcg caaacacctg acctaccact ttgccgaaga
     1021 gatccgcggc gagctctccg gcatccaggc cgcgtaagga ggaatccatg acctatcacg
     1081 tcaacggcaa gacgttctcg cacgaaccgg cgcccggcca gtgcttgcgc accttcctgc
     1141 gcgaattggg ttggttcggc gttaaaaagg ggtgcgatac cggcgattgc ggggcctgca
     1201 ccgtctggct cgacggggtt acggttaaca gctgtatcat tccggccttc cgcgccgaag
     1261 gccgccaggt gacgacgatc gagggcctgg cgcaagacgg agagctgcac ccgatgcaac
     1321 gggcgttcgt cgaagcccag ggctttcagt gcggtttctg cacggccgga atgatcatgg
     1381 cgacggccaa cttcaccgag aaggagcgcc aggatctgcc gcggttcctg aagggcaacc
     1441 tgtgccgctg taccgggtac cgcgcgatcg aggatgcgat ccacggcaat aaagttatcg
     1501 aggaagaccg gcctggccgg gcctgcggag cgagcctgcc cgcccccgcg agcgagggga
     1561 tcgtcacggg gaaggtgcgc tacaccctcg ataccgaagt cgagggcctg ctgcatttga
     1621 agctgctcag atcgccgcac gcccacgccc gcatcgtcgc catccgcaaa gaggacgccc
     1681 ttgccgtgcc gggcgtccac gaggtcttca cctgggagaa cgtgccccgg cgcctgtata
     1741 ccaccgccat ccatgacgac cacctcgtcg atcccgacga cacctacatg ctggacaacg
     1801 tcgtgcggtt cgtcgggcag cgggtggcgg ccgtggtggc cgacaccgag gccgccgcag
     1861 aggaaggctg ccgccgcatc gagatcgact atgaggtgct cccggcggtc ttcgacgcag
     1921 aggaggcgat gcaggccgga gcgccggtga tccacgacaa gaagggcgag gacccgttca
     1981 tccgtcatta cgggcgcaac gtcctgctcg acgtgcacgg ggacgtcggc gacgtcgaga
     2041 ccggcttcgc cgaggccgat gtcatccacg aggccgagta cgaggcccac cggatccagc
     2101 acgcccacct cgagacgcac cagtcgatca cctggctcga cgagcagcaa cggctgaacg
     2161 tgcgcaccag ctctcaatct ccctttgtag cgaaggcgaa gctcagctat ctgttcagcc
     2221 tcaacccgac cgacatccgg gtgttttgcg agcgcgtcgg cggcggcttc ggcggcaagc
     2281 agtaggtgct gaccgaagac atctgcgctt tggccaccct gaagacccgc cgcccggtcc
     2341 agctggagtt tacgcgcgaa gaagagttcg ttggagccat gggtcgccat ttgatgcgga
     2401 tccgggt
//
LOCUS       DASVXZ010000129         1714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_544784, whole genome shotgun sequence.
ACCESSION   DASVXZ010000129 DASVXZ010000000
VERSION     DASVXZ010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544784"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VF788_02515"
     CDS             complement(<1..210)
                     /locus_tag="VF788_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933071.1"
                     /translation="MPVATTLPTTSAHLSGLLEAVLPEPSLRELLARATAPELELQGP
                     TATRPLAVAALASAGYPVLAVTATDR"
     gene            593..1243
                     /locus_tag="VF788_02520"
     CDS             593..1243
                     /locus_tag="VF788_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010311548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933072.1"
                     /translation="MLGDDHAVFVESLVSVLTSQGFRVPAVARSLAGTIEAIRHHQPD
                     ICLLARRFSDGDGVSAIGLINAVSPATRILILAGDRDAEAMRQAVRLGAAGYLHKTCG
                     VRKLVHALERVIDGAVVLDAPRATTARSDVSEARRLAAHLTARERECLALLVEGLDTP
                     AMTLRLGVSTTTVRSHVQALLTKLGVHSRLEAATFAVRYDLVEHDQHGAESRTRTG"
     gene            1246..>1714
                     /locus_tag="VF788_02525"
     CDS             1246..>1714
                     /locus_tag="VF788_02525"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8933073.1"
                     /translation="MTGTKPLSTVRGVIPVRVLLVDDQQLLIEALATKLSTEPDIVVV
                     GHCTMRDPDPGGLAARLRPDVITIEVAQARDAAALLAMFRTAWAAARFVVLTASRDPD
                     QAVQAARAGADGWVSKESSIDLLTHALRCASQGYACFPPEHLGHVLAELRADVG"
BASE COUNT          282 a          538 c          599 g          295 t
ORIGIN      
        1 ccgatcggtg gcggtgacag ccagcacggg atacccggcg ctggccagcg ccgccacggc
       61 caacgggcgc gtggcggtgg ggccctgcag ctccagctcg ggggcggtgg cccgggcgag
      121 cagttcgcgc agtgacggtt ccggaagtac ggcctcgagc aggccggaca gatgagctga
      181 tgtggttggt agcgtggtcg ctacaggcac cgtggtggac ctttcaggca cagatgtcct
      241 tgacgcagaa cggaccccta ccgcggcgcc gaccgagccc acgggggtcg tgcccaccac
      301 gataccgatc ggcctcctcg cccgatcacc cagggttggt agcggtttgc gacagcgccg
      361 ggccgagttg gtagtccttg aagagcaggt tacgtgccgt ggacgggcga tatcggtaat
      421 cgttgagctc cgcgcgttgt atgctcaatt tggttaatcg tttatatgta gcttatttcg
      481 tgacgatgga ttatccgacc agaaatactc taactgtggg gtggggatat tggcggccgc
      541 tggggaggcg ggcggattcg gacaatccgg tcgatccgat acgaagagca ttgtgcttgg
      601 cgacgatcac gcggtgttcg tggaatcgct ggtgtcggtg ctgaccagcc agggattccg
      661 agtaccggcg gtggcccgca gcctcgccgg gacaattgag gcgatccgtc atcaccaacc
      721 cgacatctgc ctgctggcgc ggcgcttttc tgatggtgac ggggtcagcg cgatcggcct
      781 tattaatgcg gtgagcccgg cgacccggat actcatcctc gcaggagacc gtgatgccga
      841 ggcgatgcgc caagccgttc gattaggcgc cgccggctac ctgcacaaga cctgcggtgt
      901 ccgcaagctg gtgcatgcgc tggagcgagt catcgacggc gccgtggtgc tggatgcacc
      961 tcgagcgact acggcacgat ccgacgtctc agaggcacgc cggctggcgg ctcacctgac
     1021 cgctcgcgaa cgagaatgcc tcgccctgct cgtcgagggg ctcgataccc cggcgatgac
     1081 gcttcggctg ggcgtgtcga ccaccacggt acgaagtcac gtgcaggcgc tgctgaccaa
     1141 actcggagtg cactcgcggc tcgaggccgc caccttcgcg gtgcgctacg acctcgtcga
     1201 acatgaccag catggcgcgg agagccgcac gaggacgggc tagccgtgac ggggaccaaa
     1261 ccgctgagca cggttcgcgg tgtgatcccg gtccgggtgc tgctggtcga cgaccagcag
     1321 ctgctgatcg aggcgctcgc gacgaagctg tcgacggaac ccgacatcgt ggtggtcggg
     1381 cactgcacga tgcgagatcc ggaccccggc gggctggccg cccggctgcg cccggacgtc
     1441 atcaccatcg aggtggcgca agcacgggat gccgccgcgc tgctcgcaat gttccgcacc
     1501 gcctgggccg ccgcgcgatt cgtggtcctc accgcgagcc gcgaccccga tcaggcggtg
     1561 caggcagcgc gggcgggagc tgacggttgg gtgtccaagg agtcctccat cgacctcctc
     1621 acccacgcgt tgcgctgcgc cagccaggga tacgcctgct ttcctcccga acacctgggt
     1681 catgtgctgg cagagttgcg ggccgatgtc gggc
//
LOCUS       DASVXZ010000130         7796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_373017, whole genome shotgun sequence.
ACCESSION   DASVXZ010000130 DASVXZ010000000
VERSION     DASVXZ010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7796
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373017"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VF788_02530"
     CDS             <1..196
                     /locus_tag="VF788_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxidase"
                     /protein_id="HEX8933074.1"
                     /translation="YFIGYARTPAVTEKMLENMFIGNPPGNYDRILDFSTPVTGTLFF
                     VPATDFLDDLPDPPGTATTT"
     gene            468..1058
                     /locus_tag="VF788_02535"
     CDS             468..1058
                     /locus_tag="VF788_02535"
                     /inference="COORDINATES: protein motif:HMM:NF020512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1918 domain-containing protein"
                     /protein_id="HEX8933075.1"
                     /translation="MTARIGDEIMVMPRELHEQVREGQIREVRNDPDGVVYLVQWSDT
                     GYESLLPHGPDVVIKHRHTRSAGTEPPWLSKLRHPLEWRHNRDLERRRQTGYERLARR
                     VEEIIVGLGLTQSDYSIASGRVFHIPQVVSVDPGPPVGLDIRILPGQSPDDFSAHATT
                     IAYDLGMADVRVVPVGPSVIRLELLPHDRLPGPTSQ"
     gene            1230..2639
                     /locus_tag="VF788_02540"
     CDS             1230..2639
                     /locus_tag="VF788_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase (NADP(+))"
                     /protein_id="HEX8933076.1"
                     /translation="MTELGRVSDSTIFVLYGATGDLARRMVLPAFFRLAQAELLPHDW
                     RLIGNGRGDVSHEDFQARVHDALTEFGPQPDEGPWEEFRSRLRFAGGGFSTDNPGSLL
                     GVFSDAERELGGSPQRVHYFAVPPSAFEPLTRSLGRHGLAARSRVVFEKPFGTSMGSF
                     HALDRAVHQVLDESQVFRIDHFLGKEAAQDLYAVRFGNGLFSGAWDRSHVAAVQVDVP
                     EVLDVADRAAFYDSTGAVLDMLVTHLFQVAAEVAMEPPASFGADDLAAAREAVIGAFR
                     PLEPDDVVLGQFEGYRDIDGIAGDSRTETFVAARLWVDTERWCGVPFLLRTGKQLAAS
                     RQQVSLVFRQPDGPVHQLPALGNVLTFDLAGDGELDLSLVVKEPGPALTLSTARTSLP
                     LRTVPGGHPLPPYVRLIHDVLIGDRSLFTRPDGLEHVWQVAGAVLADKPEPVIYPKGS
                     WGPAEAARLAEPIGWLLKS"
     gene            2699..2977
                     /locus_tag="VF788_02545"
     CDS             2699..2977
                     /locus_tag="VF788_02545"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8933077.1"
                     /translation="MFTGDSYRHNVAAVRALEKYAAERGMTISQLAIAWTLANPAVHV
                     AIVGARQANHVQDSLAAADLSLSKANPAAIEKIMISATPVAGPSPEGM"
     gene            3121..3699
                     /locus_tag="VF788_02550"
     CDS             3121..3699
                     /locus_tag="VF788_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX8933078.1"
                     /translation="MSSPMAGTAANPALDDVSGHYDLDVAHSRLGFVARHAMVTKVRG
                     SFTEFAGSFDLDASNWPASTAQVTIQVASIETGNEQRDGHLRTNDFFDAPNYPEITFT
                     STRVEQTAEDTFAVTGDLTIKGTTRPISVDFVYTGSAIDPYGNIRIGFEGISTINRSD
                     FGITFNAALDTGGVLVSDKITLEFDISAIKAQ"
     gene            3846..4340
                     /locus_tag="VF788_02555"
     CDS             3846..4340
                     /locus_tag="VF788_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933079.1"
                     /translation="MAEVPWLDIQEQRAWRAFIDVTRELLGELNRQLSRDAGLSDADY
                     ALLVPLSEAPEGRIRPRDLGRQVDWDRSRLSHQIRRMQERGLVVREECCTDGRGAFIV
                     LTDRGREAIGSAAPDHVRSVRRFFFDVLQPGEVETLISIYDRVLDRVRSEGNSRCLEE
                     DPAP"
     gene            complement(4369..4590)
                     /locus_tag="VF788_02560"
                     /pseudo
     CDS             complement(4369..4590)
                     /locus_tag="VF788_02560"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            4650..4790
                     /locus_tag="VF788_02565"
                     /pseudo
     CDS             4650..4790
                     /locus_tag="VF788_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153386.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
     gene            complement(5287..5484)
                     /locus_tag="VF788_02570"
     CDS             complement(5287..5484)
                     /locus_tag="VF788_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933080.1"
                     /translation="MIKLRPGRAGRTAAARGGKRGRLAKAGKQATAVHRGFPYLDKRG
                     FTTMLSGWHQDGAALWCGRIL"
     gene            complement(5612..5764)
                     /locus_tag="VF788_02575"
     CDS             complement(5612..5764)
                     /locus_tag="VF788_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933081.1"
                     /translation="MWRALEAITPGALGGIAVARARARAQVWRRIVARRGRIPPAGVA
                     GGIWVR"
     gene            complement(5779..6045)
                     /locus_tag="VF788_02580"
     CDS             complement(5779..6045)
                     /locus_tag="VF788_02580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933082.1"
                     /translation="MDVTAWSKGLSVEVGRHGVVSHVGSGLLRLTADRVGLTSALSTA
                     LARPGFWPVHDCGRVLTDLAVITDGATTIGEIDTLRHQSELFGS"
     gene            complement(6176..7279)
                     /locus_tag="VF788_02585"
     CDS             complement(6176..7279)
                     /locus_tag="VF788_02585"
                     /inference="COORDINATES: protein motif:HMM:NF015799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HEX8933083.1"
                     /translation="MIDDLSGDERRWAADKRDFVADCRDDIADERDAKADARDATADE
                     RDRVADEREAALDDWERRWDGRAMQLGVLPDGTQHERDQAAVQRAEARISQESQRQER
                     EDCRVERDTSSARRKQATKRRQAATPHTALAMAFAEITRHLYEADTFDEVLSRITEVA
                     VSTIAGCQLASTTLREDSVFRTAASTHAEATEVDQAQYQTSEGPCLNVVENAMVYASA
                     FPDDRWPRLAARPTESGVHSAVSYRLAVAVPLTDASLAGSLNSYATSQHAFDVEAREI
                     GLVLAAHASVVARAIRERTTLEQLGRQLHEALSSRDVIGQAKGILMERLRITPEDAFD
                     ALRRTSQRLNLKLREIAQKLAETGELGDDTDRS"
     gene            complement(7269..>7796)
                     /locus_tag="VF788_02590"
     CDS             complement(7269..>7796)
                     /locus_tag="VF788_02590"
                     /inference="COORDINATES: protein motif:HMM:NF024857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8933084.1"
                     /translation="DEVLSRDGAVATGRVVVDVSHLTFMGVAGLSVLVGAQYRLLGEC
                     RKGLVVRGASGILRRIVKLTELSFLLEDTDSAGAAGAGSCHGLRGRRLEVGRRAAGLS
                     VTDLFVAYFGLGGTAKLGELRAFLAGMDDVLDGHQQDVAAHAVDERLVELGHQDRLLS
                     YTPGQRRSGAGSHDR"
BASE COUNT         1331 a         2619 c         2469 g         1377 t
ORIGIN      
        1 gtacttcatc ggctatgccc gcacccctgc ggtcaccgag aagatgctgg agaacatgtt
       61 cattggaaat cctccgggaa actatgatcg cattctggat ttctccacgc cggtgaccgg
      121 cacgttgttt ttcgtgccgg cgaccgactt tctcgacgat cttcctgatc cacccggcac
      181 tgctactacg acctgagctc gtcatccatc gaggcaacag atccggtagt cgcgacgatg
      241 atgcaacgga ccgggtctag ctgcgttcgc gtctggggct gctcacctct tcaccgttag
      301 cgctgaactt cggtaccgat cagcaggagt tcgaagactg acaccagcac cagagcaggg
      361 ttgtgtggtt ctgtggtggg tgacgaccac accgagttcc taagcgcgat cgcctttcca
      421 tcgccagccg aagcgcaccg tctggtttca cacccaagga ggcaccgatg accgcccgga
      481 tcggtgacga gatcatggtc atgcctcggg agttgcacga gcaggtgcgt gagggtcaga
      541 tccgtgaagt ccgtaacgac cccgatggcg tcgtctatct cgtccaatgg tctgacaccg
      601 gttacgagag cctgctgccg cacggtccgg acgtggtgat caaacaccgg cacacgcgca
      661 gcgctggaac ggaacccccg tggctgtcga agctaagaca tcctctcgag tggcggcaca
      721 atcgagacct ggagcgacgg cgacagactg ggtatgagcg gcttgcccgg cgcgtggagg
      781 aaatcatcgt cgggcttggg ctgacccaaa gcgactacag catcgctagc ggccgcgtct
      841 tccacattcc gcaggtggtc tcggtggatc ccggcccacc ggtggggctg gacatccgca
      901 tactcccggg ccagtcgccc gatgattttt ccgcacacgc tacgacgatc gcgtacgacc
      961 tcggtatggc cgatgtccga gtagtcccgg tcgggccctc ggtgatccgg ctggaactgc
     1021 tgccccacga ccggctgccc gggccaacga gccagtgacg accagtcggc cgggtccggc
     1081 atctggtacc aaccgccgtc ggtctttgcc gccatcggtt ggttgttatg tgtgccgttg
     1141 cggctttgac tcgaccaagt acccgactgc gtcggtgggg gccgggcgtg tgcgcgtgtt
     1201 gccggagccg ccatcaggaa ggctgtgccg tgactgaact tggccgcgtg tctgactcga
     1261 ccatcttcgt gctctacggc gctactggcg atcttgctcg ccggatggtg ttaccggcct
     1321 tcttccgctt ggcgcaggcg gagctgctgc cgcacgattg gcggctgatc ggcaacggtc
     1381 gtggcgatgt gagccacgag gacttccagg cccgcgtgca cgacgcgctc accgagttcg
     1441 gcccgcaacc cgatgagggc ccgtgggagg agttccgctc tcggctgcgc ttcgcaggtg
     1501 gtggcttctc gacagacaac ccggggagcc tgctcggcgt cttcagcgac gcggaacgcg
     1561 agctgggagg aagcccccag cgggtgcact acttcgccgt gccgccctca gcgttcgagc
     1621 ctctcacccg gagccttgga cggcacggac tcgccgcgcg gtcccgggtg gtcttcgaaa
     1681 agccgttcgg cacctccatg ggttccttcc acgcgctcga ccgggcggtt catcaggttc
     1741 tcgacgagtc ccaggtgttc cggatcgacc actttctggg caaggaggcg gcccaggacc
     1801 tctacgccgt gcgcttcggc aacggtcttt tcagcggggc atgggaccgc tcccacgtcg
     1861 ctgcagttca ggtcgacgtg cctgaggtgc ttgacgtggc cgaccgtgcc gcgttctacg
     1921 acagcacggg ggcggtgctc gacatgctcg tcacccactt gttccaggtg gctgccgagg
     1981 tcgccatgga accaccggcc agcttcggcg ctgacgacct ggcagcggcc cgagaggcag
     2041 tgatcggtgc gttccgccca ctggaaccgg atgacgtggt gctcggccag ttcgagggct
     2101 accgcgacat cgacggtatc gccggtgatt cccgcaccga gacgttcgtc gcggcccggt
     2161 tgtgggtcga taccgagcgc tggtgcggcg tcccgtttct gctgcgcacc ggcaagcagc
     2221 tggcggcgtc gcgccagcag gtgagcctgg tgttccgcca gccggacggt ccggtgcacc
     2281 agctgcctgc gttgggcaac gtcttgacgt ttgacctcgc cggtgacggt gaactggacc
     2341 tgtcgctggt cgtcaaggag cctgggcctg ccctgactct cagcacagcg cgtacctcgc
     2401 tgcccttgag gacggtaccc ggcggccatc cgttgccgcc ttacgtccgg ttgatccacg
     2461 acgtgctcat cggtgaccgc tcgttgttca cccgccccga cggccttgaa cacgtctggc
     2521 aggtggccgg tgcggtgctc gccgacaagc cagagccggt gatctatccg aaaggttcgt
     2581 gggggccggc cgaggcggct cggctcgccg agcctattgg ctggctgctc aagtcctgag
     2641 cctccggcgg gcaggaccgg tacggccggt ctgtgtgtac tggcgcagtc acagcgcgat
     2701 gttcaccggc gacagctacc ggcacaacgt ggcggcggtg cgcgcgctgg agaagtacgc
     2761 cgctgaacgc ggtatgacca tcagccagct ggccattgcc tggacgctgg ccaacccagc
     2821 agtgcatgtg gccatcgtcg gtgcccggca ggcgaaccac gtccaggaca gccttgccgc
     2881 cgcggatctc tcgctgagca aagcgaaccc cgccgcgatc gagaagatca tgatttccgc
     2941 gactccggtc gccggcccgt caccggaggg tatgtgaggg ccggagtgcc ctgatgacgg
     3001 gcagactccg gttgctgggc tgcccgacac gggaataatt gttgacatga cagcatttaa
     3061 tgtatgctga cgtatcagca acttgttggt tcgacacacc accccgagga gcagctaccc
     3121 atgtccagcc ctatggccgg tacggccgcc aaccccgcgc tcgacgatgt ctcgggccac
     3181 tacgatctcg acgtggcgca cagtcgcctc ggattcgtcg cgcgccatgc catggtcacc
     3241 aaagtgcgcg ggtccttcac tgagttcgcc ggttccttcg acctcgacgc gtccaattgg
     3301 cctgcgtcca cggcgcaggt cactatccag gtagccagca tcgaaaccgg caacgagcag
     3361 cgcgacgggc acctgcgcac caatgacttc ttcgacgccc ccaactaccc ggagatcacc
     3421 ttcaccagca cccgggtcga gcaaactgcc gaagacactt tcgcggtcac cggtgacttg
     3481 acgatcaaag gcaccaccag accgatcagc gtcgatttcg tctacaccgg cagcgcgatc
     3541 gacccgtacg gcaacatccg gatcgggttc gaaggcatct ccacgatcaa tcgcagcgac
     3601 ttcggcatca ccttcaacgc cgccttggac actggcgggg tgctagtgtc ggacaagatc
     3661 actctcgaat tcgacatctc cgcgatcaag gcccagtgag ccgggcagcc gataatctgc
     3721 ccgcagaccg gatgagtgca acggtgccgg ttcgcccagc ctgcgcgtgc tgggcgaatc
     3781 cggcttcggg tagatccggc taagcctccg ggacgatggt cgctgaccag gagaaggttc
     3841 cggcaatggc tgaagtgccg tggctcgaca tccaggagca gcgggcgtgg cgagcattca
     3901 tcgacgtgac ccgggaactg ctgggggaac tcaaccggca gttgagccgc gacgctggcc
     3961 tttccgacgc cgactacgcg ctgctcgtcc cgctgtccga agcacccgaa ggccggattc
     4021 gcccacgcga tctcggccgg caggtggact gggaccgcag ccgcctgtcc caccagatcc
     4081 ggcggatgca ggagcgcggc ctggtcgtcc gcgaggaatg ctgcaccgac gggcgcggcg
     4141 cgttcatcgt gctgaccgac cgcggccggg aagctatcgg atcagccgca cccgatcacg
     4201 ttcgcagcgt gcggcgcttt tttttcgacg tcctgcagcc cggagaggtc gagactctga
     4261 tttcgattta tgaccgggtg ttggaccgag tccgaagcga gggcaacagc cgctgcctgg
     4321 aggaggaccc ggcaccctga ggtgggggag accgtcttca caggcttcga tccgacccag
     4381 ccacttgatg ctggccgcac cgagccggcc ggacaccacc agacgagccg gaaagccgtg
     4441 atcaggtggg agcacctcgc cgttcatggc caatgcaacc agggtgtcat cggcacttac
     4501 cggcgctgtc tcagtagccg aggtccgcgt gaccttccgc tcgggcgcgg ccctcgagcg
     4561 acagcgacac cgcctcctcc gccgccgcac ggcggtaggt actttgaggc caccgataac
     4621 gtccggcgtg ctgaagattc tgtgagctca tgaacccgac cgctcaggaa caacacgacc
     4681 cggccggtga cgagcaggag ccggactacc gcttcacgct tgccaacgag cggaccttcc
     4741 tcgcctggat ccgcaccgcg ctcgccctga tcgccggcgg cgtcgccgtc gcctcttctg
     4801 gcggccacgg cggtgctagt gcggccccga tgtgttgcag gcgagggacg tgctcgcggg
     4861 cgtggtgccc gcagaacagc agctccccgc cggtgcgctg cagcgcccgc accttcgccg
     4921 gcgcgctgca gcggtcacag caatcgtggc tggtgagtac gggcggcacg atcgtggtga
     4981 tcatctcgtc acgctgcctc gagtagcgcc cggccggacg cgtgagtcga ttgggaccgc
     5041 ctggcggatc ggcgatgatc agaccggcct cggtgagccg aaggcccgcg aactggtcgg
     5101 tgaaccatgc tccgtcaatg atcaagtttc caccgacgtc tcggagacct cgcaacggcc
     5161 gacggcgacc gcccagagaa cagcgcggtc tcgctgaccc agcgggggtg gcggtggtgg
     5221 cgctcatcgc ggttctcctt cccgtctccc tcacctggtt gacgtcgtct ggcgcacgtc
     5281 gaaccgttac aggatgcgcc cgcaccacaa agcagcacca tcctggtgcc acccagaaag
     5341 catggtggtg aacccccgtt tgtcgaggta gggaaacccc cggtggacgg cggtagcctg
     5401 ctttcccgcc ttggctagcc ggcctcgctt gccgcctcgg gccgccgcgg tgcgaccggc
     5461 ccgtcccggg cgcagcttga tcaccaatga ctcgtcgtgt tgtcgcacca gacggtcagc
     5521 ggatgaaacc cgaacgtctg tttgaacgtg ggtccagcct gctgtttgtc actgtgagcc
     5581 agcacgatcg aggcgtccaa ccggatcacg gtcacctcac ccagatccca ccggcgaccc
     5641 cagcgggcgg gatccgcccg cgccgagcca cgatccggcg ccatacctgc gcgcgggccc
     5701 gcgcccgcgc caccgcgatc ccgcccagcg cgcctggggt gatcgcttcc agcgcccgcc
     5761 acacggtggt gtccgaggct acgatccgaa cagctcactc tggtgacgca gggtgtcgat
     5821 ctcaccgatc gtcgtggcac catcggtgat gaccgccaga tcggtcagca cccgaccaca
     5881 atcatgcacc ggccaaaaac cgggccgagc caacgccgtg gacagcgcgc tggtcagccc
     5941 cacccgatcg gccgtcagcc gcagcaatcc cgatccgaca tgcgacacaa caccgtgcct
     6001 acccacttcc acggacaggc ccttcgacca cgcggtaaca tccaccggaa aagtgcctct
     6061 cacgccaacg ggaacaagga cctcgaagcc ccttatcctc gcagctcaca ggcactttct
     6121 cgtatcaaca cacccgccca acaaggatca cttcgatctc ggtgaatgac cgaggttagc
     6181 ttcgatcggt gtcgtcgccg agctcgccgg tctcggcgag cttctgggcg atctcgcgga
     6241 gtttgaggtt cagtcgctgg gatgtgcgtc gtagcgcgtc gaaggcgtct tcaggggtga
     6301 tgcggagtcg ttccatcaag atgcccttgg cttggccgat gacgtctctt gacgacagcg
     6361 cctcgtggag ttggcgtcct agctgctcga gggtggtgcg ttcccggatg gccctggcaa
     6421 ccacggaagc gtgagcagcc aggacgagcc cgatctctcg tgcttcgacg tcgaaggcat
     6481 gttgagaggt ggcgtaggag ttgagcgatc ccgcaaggga agcgtcggtc aagggcactg
     6541 cgacggccag tcgataggag accgctgaat gcacgccgga ctcggtcgga cgggcggcga
     6601 gccggggcca ccggtcgtcg ggaaacgccg aggcgtacac catggcgttt tcgacgacgt
     6661 tgaggcaggg cccctcgctc gtctggtact gggcctgatc aacttcggtt gcttcggcgt
     6721 gggtggatgc cgcggtgcgg aagacactgt cttctcttag ggtggtgctg gccagctgac
     6781 agcccgcgat ggtcgagacg gccacctccg tgatccgcga gagcacctca tcgaaggtat
     6841 cggcctcgta gaggtgccgg gtgatctcgg cgaaggccat ggccagagcc gtatggggcg
     6901 tggcggcttg gcgtcgcttg gttgcctgct tccggcgtgc tgaggaggta tcgcgttcga
     6961 ctcgacaatc ctcccgctcc tgacgctgtg attcttgcga gatccgggcc tcggcacgct
     7021 gaacagccgc ctggtcacgc tcgtgctggg taccgtcggg aaggacacca agctgcatag
     7081 cgcggccgtc ccaacgccgt tcccagtcgt ccagggcggc ttctcgttcg tcggcgaccc
     7141 ggtcgcgctc atccgccgtg gcgtccctcg cgtcggcctt ggcgtcacgc tcgtcggcga
     7201 tatcgtctct gcagtcggcg acgaaatcgc gcttgtcggc cgcccacctc cgctcgtctc
     7261 cagagagatc atcgatcatg tgatcctgct cctgaccgtc gctggcctgg tgtatacgac
     7321 agtaaacggt cctggtgccc cagctcaacg agccgctcgt cgaccgcatg ggctgccacg
     7381 tcttgttggt ggccgtccaa aacatcatcc atgccagcga ggaaggcacg cagctcaccg
     7441 agcttcgccg tgcctcccaa accgaaatag gccacgaaca gatccgtcac agacagccca
     7501 gccgcccggc gccccacctc aagtctgcgc ccccggaggc cgtggcaaga tcccgcgccc
     7561 gctgcccccg ccgaatccgt gtcttccagc aggaaactca gctcggtgag cttgacaatc
     7621 cgccgcagga tccccgacgc accacggacc acaagcccct tccgacattc accgagaagg
     7681 cggtactgcg cgccaaccag cacactcaga ccagcgacgc ccataaaggt caaatgcgac
     7741 acatcgacca ccacacggcc ggtcgccacg gcgccatcac gggacaagac ctcatc
//
LOCUS       DASVXZ010000131         1540 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_641458, whole genome shotgun sequence.
ACCESSION   DASVXZ010000131 DASVXZ010000000
VERSION     DASVXZ010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641458"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            167..>1540
                     /locus_tag="VF788_02595"
     CDS             167..>1540
                     /locus_tag="VF788_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:734..736,aa:Sec)
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8933085.1"
                     /translation="MGLRRLLQSWPVYRQLTGGDPLGRGKAVESPSHVSLIARTAGAD
                     RVARSVCPYCAVGCGQQVFVKDEKVIQIEGDPDSPISRGRLCPKGSASKQLVTGPHRE
                     QKVLYRAPYATEWAELDLDTAMEMVTDRVLDARRKGWQDTDENGEPLRRTMGLASLGG
                     ATLDNEENYLIKKLFTALGALQIENQARIUHSATVPGLGASFGRGGATDYLEDLCNSD
                     CIVIMGSNMAEAHPVGFQWVMEAKANDATVIHIDPRFTRTSALSDLHVPLRTGTDIAF
                     LGGVINYILAHELDFREYLLAYTNASFLVSEDYQDTEDLDGLFSGYHEETTSYDSATW
                     HYEGVSARPSPGTRHPGEARETSAAYQHGSGGPVLEGVTEGIAADPTLRDPRCVYQIL
                     KRHFARYTPEAVEAICGVPQEQFQRVCTAWTSNSGRDRTAALVYSVGWTQHSVGAQYI
                     RAGAIIQL"
BASE COUNT          276 a          464 c          524 g          276 t
ORIGIN      
        1 gccgtgaatg tggggggtcg ggttaccagt gctccactgc tcgcgtgacg gctccgacac
       61 cgagctcgcc atcgaagcca cccaactgat ccccgagtcc accaccgagg agatttccgc
      121 cagtcacgtt gagtgttctg gttcggcagc cggaagggag ctgtgagtgg gcttacgcag
      181 gcttcttcag tcgtggccgg tctatcggca gttaacgggt ggtgatccgc taggtcgcgg
      241 taaggctgtg gagtcacctt cgcatgtctc gctgatcgcg cggacggccg gcgccgatcg
      301 ggtcgcgcgc tcagtgtgtc cgtattgcgc ggtggggtgc gggcagcagg tgttcgtgaa
      361 agacgagaag gtgatccaga tcgagggtga tccggacagc ccgatatcgc gcggacggct
      421 atgcccgaag ggctcggcca gcaagcagct ggtgacgggt ccgcaccgcg agcaaaaggt
      481 gctctaccgc gcgccatatg ccaccgagtg ggctgagctg gacctggaca ccgcgatgga
      541 gatggtcacc gatcgcgtgc tggacgcgcg gcgcaagggc tggcaggaca ccgacgagaa
      601 tggcgagccg ttgcgccgga cgatggggtt ggccagtctg ggcggcgcca cgttggacaa
      661 tgaagaaaat tatctgatca agaagctgtt caccgcgctg ggcgcgttgc agatcgagaa
      721 tcaggcccgg atttgacact ccgccaccgt tcccggtctg ggagcttcct tcggtcgtgg
      781 tggggcgacg gattacctgg aagacctctg caactctgat tgcatcgtga tcatgggttc
      841 gaacatggcc gaggcgcatc cggtcggatt ccagtgggtg atggaagcca aggccaacga
      901 tgccaccgtg atccatatcg acccgcggtt cacccggacc agcgcgctgt cggatttgca
      961 cgtgccgctg cgtaccggga ctgatatcgc cttccttggc ggagtgatca attacattct
     1021 ggcccacgag ctcgacttcc gcgagtacct gctggcctac accaacgcgt cgttcctggt
     1081 cagtgaggat taccaggaca ccgaggacct cgatggcctg ttcagcggct accacgagga
     1141 gacgacgtcc tacgactcgg cgacgtggca ttacgagggc gtatcggcgc gcccatcgcc
     1201 aggaacccgg caccccgggg aagctagaga gacctcggcc gcctaccagc acggttcggg
     1261 cggcccggtg ctcgagggcg ttacggaggg aatagcggcg gatcccacgc tgcgggaccc
     1321 ccgttgcgtt taccagatcc tcaagcggca cttcgcccgc tacaccccgg aggccgtgga
     1381 ggcgatctgc ggcgttcccc aggaacagtt ccagcgggtc tgtacggcat ggacgtccaa
     1441 ctcggggcgg gaccgcactg ccgcgctggt ttacagcgtg ggctggaccc agcacagtgt
     1501 cggggcgcag tacatccgcg ccggtgcgat catccagctg
//
LOCUS       DASVXZ010000132         1708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_641586, whole genome shotgun sequence.
ACCESSION   DASVXZ010000132 DASVXZ010000000
VERSION     DASVXZ010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641586"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..882
                     /locus_tag="VF788_02600"
     CDS             31..882
                     /locus_tag="VF788_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8933086.1"
                     /translation="MAISDIEEAWMRPIDEQTVLVTGTTSGLGRHLVQRLAAAGAAVV
                     AHGRDTERLRRTRDQIREATGREVETVQADFADLTQVHRLADEVLDRYPQLHALVNNA
                     GVGFGPPGSGREVSADGIELRFAVNHLASYLLARRLADRLVASAPARIVQVASAGQLA
                     LDPDDPFTERGYDGVTAYRRSKLAQVMASFDLAADLVATGVSVNAVHPATFMDTAMVR
                     EAGQAPSSSVEEGVDAVWWLLTDPDLDWVSGHYFEGTKPAQPDPQADDPAARAWLRHL
                     SDSFISR"
     gene            1272..>1708
                     /locus_tag="VF788_02605"
     CDS             1272..>1708
                     /locus_tag="VF788_02605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933087.1"
                     /translation="MNELWSDDFEVLHWVVERFERTGHSIEVGEALRVFPEEQYDSVR
                     NSLVRLSSHTYMVTVNGGARGGGGKAGSPAANEATDRALRLAGALSDNPELLADRILA
                     VLAEGVVSEADPQKRYKLEAGLRGVGGMTRDVFVDVIAAAVARS"
BASE COUNT          278 a          543 c          585 g          302 t
ORIGIN      
        1 acgtacatct gatggtggcc gggtatctcg atggcgatat ccgacatcga ggaggcctgg
       61 atgcgtccga tcgacgagca gaccgtgctg gtcaccggca ccaccagcgg cctggggcgg
      121 cacttggtcc agcggctcgc agcggcgggt gccgctgtcg tcgcgcacgg gcgcgatacc
      181 gagcgcctgc gccgcacccg tgaccagatc cgcgaggcga ccggccggga ggtggagacc
      241 gtccaggccg atttcgccga cctcacccag gtccaccggc tggccgacga ggtgctggac
      301 cggtatccac agctacatgc gctggtcaac aacgccggag tcgggttcgg tccgcccgga
      361 tccggccggg aggtcagcgc tgatggcatc gagttgcgct tcgcggtcaa ccacctggcg
      421 agttacctgc tggcccggcg gctggccgac cggctggtcg catccgctcc agcccgcatc
      481 gtgcaggtcg cctccgccgg tcagctggcg ctcgatccgg atgatccgtt caccgagcgc
      541 ggctacgacg gtgtcaccgc ataccggcgt tccaagctgg cccaggtgat ggcgagcttc
      601 gaccttgccg ccgatctggt ggctaccggc gtgtccgtca acgccgtgca cccggccacg
      661 ttcatggaca ccgcgatggt ccgcgaggcc gggcaagcgc cgagcagcag tgtcgaggag
      721 ggagtcgacg cggtctggtg gctgctcacc gatcccgacc tggactgggt cagcggccac
      781 tacttcgaag gcaccaagcc agcccaaccc gacccgcaag ccgacgaccc cgctgcccgt
      841 gcctggttgc gacatctctc tgactcgttc atcagccgtt agccagctgg ccagaccccg
      901 ttgcgccgtg ctacgtcgcg gcgagccgag tggcgagtcg ttgaggtaga cgtctcatgg
      961 gccttctggt gacacgattc agatgaatgg tgagacgtgt gttcggcatt cgactttctc
     1021 ggcgtggcga tgaccaaaac ctaaagctgt cgccgatgtg gttctacact gcggcaagct
     1081 gaaggggctc cgtctcgccc aaccgatctg gcgaggcgat cagtggggca ggcggccctg
     1141 taagaaaggg gacactccat gcggcgccgc gcggacgcca gccgattagc gcgccttggt
     1201 gcgcacccaa cccctatttc ttcgatgttc gtaatcgtct tgctaacccc gatgacttgg
     1261 gtggtgggcg cgtgaacgag ttgtggtcgg acgattttga ggtgctgcac tgggtcgtcg
     1321 agcgattcga gcgcacgggg cacagcatcg aggttgggga ggcgctgcgg gtctttcccg
     1381 aggagcagta cgacagcgtg cggaactcgt tggtccgctt gagttctcac acctacatgg
     1441 tgaccgtcaa cggcggtgcg cgcggaggag gtggcaaggc tgggtcgccg gcagctaatg
     1501 aggccaccga ccgcgccctt cgcctggcag gagcgttgtc ggataacccc gaattactcg
     1561 ccgatcggat cctcgcggtg ctcgccgagg gagtcgtgag cgaggcagat ccccagaaac
     1621 ggtacaagct cgaggccggc ctcaggggtg tcggcggtat gacccgagat gttttcgtgg
     1681 acgtcatcgc cgctgccgta gcgcggtc
//
LOCUS       DASVXZ010000133         6343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_104341, whole genome shotgun sequence.
ACCESSION   DASVXZ010000133 DASVXZ010000000
VERSION     DASVXZ010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6343
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104341"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1951)
                     /gene="rph"
                     /locus_tag="VF788_02610"
     CDS             complement(<1..1951)
                     /gene="rph"
                     /locus_tag="VF788_02610"
                     /EC_number="2.7.9.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009085022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rifamycin-inactivating phosphotransferase"
                     /protein_id="HEX8933088.1"
                     /translation="MIEQSVLGLQEVDEMQVPVVGGKGAHLGGLSRIDGIRVPAGFCV
                     TTDAFRRIVAEAPSIDDRLDQLSRLNPDDREAIRTLSAEIRRTFEEIAVPGDLAAAIT
                     RALAPLGEQAAYAVRSSATAEDLPTASFAGQQDTYLNVVGPPAILQHVSRCWASLFTE
                     RAVTYRQRNGVDHGTVHMAVVVQQMVFPQAAGILFTADPVTSNRRVASVEASFGLGEA
                     LISGLVNGDVYKVRDGEVVAKAVATKQLAIHASPAGGTQDVAIEPERQDQPALTDAQV
                     VRLAQLGRRIEAHFGRPQDIEWCLVDDDFQILQSRPITTLFPIPESGDRENHVYVSVG
                     HQQMMTDPMKPLGLSFWQMTTPAPMAEAGGRLFVDVTQRLASPASRAGLLEALGRSDP
                     LTGDALQTILERDGFIRPLPDEGPPGPLFGGAPAPIETDPAIVTELIGRSQASIAASE
                     RDIRTKSGEALLDFIQADIQELKRILFDPQSHQVFMSAMEAAWWLNEQLEAWLGEKNA
                     ADTLTQSVPHNVTSEMGLALLDVADVIRPHPEVVAFLHHVEDEGFLDELAKLSGGREA
                     RDAIEAWLEKYGMRCVGEIDITRPRWSERPSTLVPVILGNIKNFEPGAGKRRFDEGRQ
                     DARKKEEELLAQLRALTEGQHKAEET"
     gene            complement(2869..3204)
                     /locus_tag="VF788_02615"
     CDS             complement(2869..3204)
                     /locus_tag="VF788_02615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933089.1"
                     /translation="MHAETKTGTATRHRPNPSIDPGLPGGTTTYELGAQFGIDRRTVS
                     NILHRHGVQMRRRGLSPDEVDDAIHLYNFGWSLARVGEHLGVDPTTVLNRLWGRGIPT
                     RDTHGRARP"
     gene            3574..4455
                     /locus_tag="VF788_02620"
     CDS             3574..4455
                     /locus_tag="VF788_02620"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX8933090.1"
                     /translation="MHPVISWSAPDAAREHFHHDGFVVMEPAFTAEQCGWLRERLDGL
                     FTGAFPTGIYPDEWYWREGISLPDATRHMANAWKSDPAIASLVQAEWIGHWVDHLQGW
                     DGSRLGQDTIWIKPPLARASALHQDNSFIDYLVPATLATCWMTFDNTHADAATIEYVP
                     GSHRWPTVPLPRDFHAPGGDHRARMRASAEAAGVADPRVVALEVPEGSVVFHDGNVWH
                     GAGAGHRTGTWRHSLAAHVLPVATRFSDAPGGYIYRRYQLSGDDTLYNGFFPPYPVHS
                     GLPTVPVIPVCEPADSR"
     gene            complement(4732..5322)
                     /locus_tag="VF788_02625"
     CDS             complement(4732..5322)
                     /locus_tag="VF788_02625"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933091.1"
                     /translation="MTRTIANGTKHGALHAGKQPGPSAEDLRANSDHITAVVSAGEIT
                     WLVAHLQAVVAASPAAWAGKGMTLLQLTALHLISAHAPVTLTDLAQALGTGSPATSAM
                     VDRLIRTGLVAGAADPQDRRRVQLTITGHAKAMIGGIDLSTARRLQTMLNHMSPQGHR
                     YLIDVLRDTVRRSARHPTKRRPSRSAGTPQVGPHPG"
     gene            complement(5480..5887)
                     /locus_tag="VF788_02630"
                     /pseudo
     CDS             complement(5480..5887)
                     /locus_tag="VF788_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232036.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(6120..>6343)
                     /locus_tag="VF788_02635"
     CDS             complement(6120..>6343)
                     /locus_tag="VF788_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010226027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEX8933092.1"
                     /translation="GRGRGGTATALRRMRACPTIVGVDSDRLYPLHQQAELADLLGVD
                     LRVIRSQRGHDGFLVEIDQINAVLADALT"
BASE COUNT          999 a         2062 c         2112 g         1170 t
ORIGIN      
        1 ttgtctcctc ggccttgtgc tgtccttcag tcaaggcccg caactgcgcc agcagctcct
       61 cttccttctt ccgggcgtcc tgccgcccct cgtcgaagcg ccgcttgccg gcgccgggct
      121 cgaagttctt gatgttgccg aggatcacgg gcacgagcgt ggaggggcgc tcgctccaac
      181 gcggccgcgt gatgtcgatc tcgccgacgc agcgcatgcc gtacttttcg agccacgcct
      241 cgatggcgtc tcgtgcttcc cgcccgcccg agagcttggc cagctcgtcc aggaaaccct
      301 cgtcctcgac gtggtgcaga aacgccacca cctccggatg cgggcggatc acgtccgcga
      361 cgtctaggag cgccagcccc atctccgatg tgacgttgtg gggcacggac tgcgtgagcg
      421 tgtccgccgc gttcttctcg cccagccacg cctccagctg ctcgttgagc caccacgcgg
      481 cctccatcgc cgacatgaac acctgatggc tctgaggatc gaacaggatc cgcttcagct
      541 cctggatgtc cgcctgaatg aagtcgagca gcgcctctcc ggacttcgtc cggatgtcgc
      601 gttccgaggc ggcgatggat gcctggctgc gcccgatcag ctcggtgacg atggccggat
      661 cggtctcgat cggagctggc gcgccgccaa acagtggccc ggggggaccc tcgtcaggga
      721 gcggccggat gaagccgtcg cgctcgagga tggtctgcag cgcgtcccct gtcagcggat
      781 cggatctccc cagggcctcc aggaggccgg cgcggctcgc cggcgaggcc aacctttggg
      841 tgacgtcgac gaacaggcgg ccgccggcct cggccatggg cgcgggggtc gtcatctgcc
      901 agaaggagag cccgaggggc ttcatagggt cggtcatcat ctgctgatga ccgacggaga
      961 cgtagacgtg gttctcccgg tcgccggact cggggatggg gaacagcgtg gtgatcggcc
     1021 ggctctggag gatctggaag tcatcgtcga ccaggcacca ttcgatgtcc tgggggcggc
     1081 cgaagtgcgc ttcgatccgc cggccgagct gcgcgagccg aacgacctgc gcatccgtca
     1141 gcgcgggctg gtcctgccgc tccggctcga tcgccacgtc ctgcgtcccg cccgccggcg
     1201 aggcgtggat ggcgagctgc ttggtggcga ccgccttggc gacgacctcg ccgtcgcgca
     1261 ccttgtagac gtccccattt accaggccgg agatcagggc ctcaccgagg ccgaagctgg
     1321 cctctacgga ggcgactctc cggttggacg tgacggggtc ggccgtgaac aggatgccgg
     1381 ccgcctgcgg gaagaccatc tgctgcacga ccacggccat gtggaccgta ccgtggtcga
     1441 cgccgttgcg ctggcggtag gtcacggccc gctcggtgaa cagcgaggcc cagcaccggc
     1501 tgacgtgctg gaggatcgcg ggcgggccca cgacgttcag gtacgtgtcc tgctggccgg
     1561 cgaaggaggc cgtcggcagg tcctctgccg tcgcgctgga tcggacggcg taggcagctt
     1621 gctcgccgag cggagcgaga gcgcgggtga tcgccgccgc gagatcgcca gggacggcga
     1681 tctcctcgaa ggtccggcgg atctccgcgc tgagcgtgcg gatcgcctcc cggtcatccg
     1741 ggttcaggcg cgacagttga tcgagccggt cgtcgatcga cggcgcttcc gccacgatcc
     1801 gccggaaggc gtccgtcgtc acgcaaaagc cagccggcac gcggatccca tcgatacgcg
     1861 atagcccgcc caggtgcgcg cccttgccgc caacgaccgg gacctgcatc tcgtcaacct
     1921 cttggagacc caacacggac tgctcgatca tcgcgatacc tccgaggcag ccgtgctccg
     1981 ttgccctgca ctggcccgtc gaatcaccgg cgcctcgcgc agtgtcgaac ctcttgttcg
     2041 gcacgtcctc atctctcgcc ttccccccga ccagtcgggc ggcgcgcaca cgcgcactcc
     2101 cgcgcccagc gcccgcaacc gcaccgccag tcccaccagc ggttcgtcac cgcgtccccc
     2161 gtccgccgac aacaacacac gcacgtcgtg gccccatgtc ttcgtccgtt cttggtccgg
     2221 ccgccgattc tgcggcccga cccgggtctt gccgcaagcc ccccggtgcg ttatacgtta
     2281 aaagaggcaa ggagcgagat ctccttgcct ttgcctttat cgtccgctgg gaactgacaa
     2341 ccttcttgcc aagcggcggt gcgccacgta cggcggtaca cctcgttggc ccgggaggat
     2401 gtcccatcgg cctacagatg cagccgcgga acgagaagtt ctttcccttt gccggtaagg
     2461 cccgaacgcc gtcgagcgcg ccgccattct cccgaaggtc gtcgcgccac gcgagcgctg
     2521 ggcgaagctc gccaaatgga cgaccgccga gctccacggc cgccgtagcc caaatcggcc
     2581 ggcagccaag cgaacgaccc cacgccaccc cgcccgggtc gcccagatcg tggcccggct
     2641 gtccgccgca acgaccagat cctcgtcccg tgcgccgcct acaccggcca gcgtcgacac
     2701 ccggcaacgc cgctggagcg ccacccagcc gctcatgacg gaagtgcatt caattcggca
     2761 tgtcagtgcg ttggcgtgga agaggaatca gcggcatgta aatgcgttcg ctgaagtggg
     2821 gcggtccgat acacgatggt tccggcggga tatcggccgc tgatcccttc aaggtcgggc
     2881 tcgcccgtgg gtgtctcggg tggggatgcc gcgtccccac agtcggttca gcacggtggt
     2941 cgggtcgacg cccaggtgct cgccgacccg tgccagtgac cagccaaagt tgtagaggtg
     3001 gatggcgtcg tcgacttcgt cgggggagag gccgcggcgg cgcatttgca cgccgtgccg
     3061 gtggaggatg ttgctgaccg ttcgtcggtc gatgccgaac tgggcaccca gctcgtaggt
     3121 tgtggtaccg ccaggtagcc ccggatcaat gcttgggttt ggtcggtgtc gagttgccgt
     3181 gcccgtcttg gtttcggcat gcacgacgag gagcttttgt gacgagcgtg agcacgtcgt
     3241 cgtcgttttc gctgacacgc aggtgatccc acgcttcccc gagcccgcga ccgacgagcc
     3301 gcgtgactcg aaccgcaacc agccgctgct cgagcgagcg caggagttag tgcagtcaat
     3361 cggaccggag cgagcgccgg gctacgaacg gctagaggct gagttggccg actacgaggc
     3421 gacgatggta gagcggttct ggttgatcaa cggtgtcgtg gcggacatgc cgcttaagtc
     3481 agtggtgaag caccgcgatc agtgtgtgtc tgcttgcgcg agcgtttcat ggacgagccg
     3541 cactgtcact gaagcaggat ctactctcta gacatgcacc cggtcatcag ttggagcgcg
     3601 ccggacgcgg cccgtgagca cttccatcac gatgggttcg tggtgatgga gccggccttc
     3661 acagccgagc agtgcggatg gctccgagaa cggctcgatg ggctgttcac cggcgctttc
     3721 ccgactggca tttatcccga cgagtggtac tggcgggagg ggatcagcct tcccgacgcc
     3781 acccggcaca tggccaacgc ctggaagagc gacccggcta tcgcgtcact ggttcaagct
     3841 gagtggatcg ggcactgggt cgaccacctg cagggctggg acggcagccg gctcggccag
     3901 gacaccatct ggatcaaacc gcctctggcg cgggcttcgg cattgcacca ggacaactcc
     3961 ttcatcgact atctggttcc ggcgacgctt gcgacctgct ggatgacctt cgataacacc
     4021 cacgccgatg ccgcgacgat cgagtacgtc ccaggatcgc accgttggcc gaccgttccg
     4081 ctaccccggg actttcacgc gccgggtggc gatcaccggg cacgtatgcg agcttcggct
     4141 gaggctgcgg gtgtcgcgga tccccgcgtc gttgctctgg aggtgccgga aggctcggtc
     4201 gtctttcacg acgggaacgt ctggcacggg gccggggcag gtcatcgcac cggaacttgg
     4261 cgacactccc tggccgctca tgtcttgccg gtagcgacgc gcttctccga cgcgccgggg
     4321 ggttacatct atcgccgcta ccagctttcc ggcgacgata cgctgtacaa cgggtttttc
     4381 ccgccctatc cggtccactc aggtttgcct accgtgccgg tgattcctgt ctgcgaacca
     4441 gccgactccc ggtagtactg gcgccgacag ccggcgcggt ctccagctcg ggtcgggatc
     4501 ggttgcggtg tcctgttcac ccagtagggt gcgggcttgc gcgcatcgcg cagatcgggg
     4561 tgatcagctg tagcagcgtt accctgggca accccggtcg catccgaccc tggcgcgcct
     4621 gtcagacaag tccaaacgct ggagcggcgg ccatcaccgg aaccccatac cgcggtcatt
     4681 cgacgccggc ctctgcctga cgcaccgtga ccttgttggc ggtgctgctg ctcaccctgg
     4741 atgcgggccc acctgcggtg ttcctgcgct gcgagaaggg cggcgtttcg ttgggtgtcg
     4801 ggcggatcgt cgtacggtgt cccggagtac gtcgataagg tagcggtggc cttgcgggct
     4861 catgtggttg agcattgtct gaaggcgcct ggcggtactc aggtctattc caccgatcat
     4921 tgccttggcg tggccagtga tggtcagttg gacgcgccga cgatcctgcg ggtccgctgc
     4981 cccggccacc agtcctgtgc ggatcagccg atcgaccatc gcgctggtag ctggtgagcc
     5041 ggtacccagc gcctgggcca agtcggtgag ggtgactggt gcgtgcgcac taatgaggtg
     5101 cagcgcggtg agctgcagca gagtcatccc cttgcctgcc caggctgcgg ggctagcagc
     5161 aacaactgcc tgcaggtggg cgacgagcca ggtgatctcc cccgccgaca ccaccgccgt
     5221 gatgtggtcg ctgttcgcgc ggagatcctc tgccgagggg cccggttgct tacccgcgtg
     5281 caatgcgccg tgcttggtgc cgttggcaat cgtcctggtc atgcctttgg cccttctctg
     5341 tgaggggatt gggtcgggtg tcagtggctc gccggggcgt ggcgtagcag caccggtccc
     5401 gtcctcacgc tcctaggcgt ctgaccaagc gatcaagaaa agaggtcttc accacggcat
     5461 ctcgatgatg atgatcctgg acctcgtgca gcttgtcggt cgcgacgaag acgaatccgc
     5521 ggatggactt cttattcggc acgaaggggc tggccttgat ccgggcgatc gactgtcgga
     5581 cgtcctcgtc aaggtctggg aaggcctcgg cggaccatgc tggcttgatg ccggtgtcgt
     5641 cctggatgga tttcttgaac tggttgtcag tgaaggtgag catgccgcga tcggtgtggt
     5701 ggatgaggat gatctccagg gtgccgagca gccgctggct aatcgctagc gagcggatgt
     5761 agacgtccag ccgggcgtcc atgcaggcca cgacggcgac gtgcttggcc ggcggcaacg
     5821 gcagcgggcc attgaaggtc ttggtgtaac gggcgttgtt agcgagcagt tcatcaatga
     5881 tggacacgca tactctggtg tgcaagggga tgaagtgggc agcgggaatg cgttcattcg
     5941 ccgactcgac cagaagcatt cgatatctga ggaattgctt ccgagggctt cttagtcatt
     6001 cgctgacgct gtagaacaag tacgctgcaa cgtcggatgc agggactagt agccttccac
     6061 tcaacttcga cagccgattt tccgcgccgc aagttcgtct cgctgcaact gagatccagt
     6121 taggtaaggg catccgctag caccgcgtta atctggtcaa tctccacgag aaagccgtcg
     6181 tggccccgct gcgagcggat gaccctcagg tccacgccga gcaggtcggc gagctcggct
     6241 tgttggtgca ggggatagag tcggtcggag tccactccga cgatcgtcgg gcaagcccgc
     6301 atccggcgga gcgcggtggc ggtgccacct cggccacggc cga
//
LOCUS       DASVXZ010000134         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_462790, whole genome shotgun sequence.
ACCESSION   DASVXZ010000134 DASVXZ010000000
VERSION     DASVXZ010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462790"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            427..579
                     /locus_tag="VF788_02640"
     CDS             427..579
                     /locus_tag="VF788_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933093.1"
                     /translation="MGAVPSVTLDIVAQARSVRLRLSGELWLFVAPLHRLEQVEIHHG
                     DVRSRP"
     gene            617..898
                     /locus_tag="VF788_02645"
     CDS             617..898
                     /locus_tag="VF788_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007027388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEX8933094.1"
                     /translation="MLRSFADKDTERVWRRERSRRLDQHTQRAALRKLLILDAAETLD
                     DAGIPPGNRLEKLRGDRSGQYSIRVNQQWRICFRWSAAGPEDIEITDYH"
     gene            911..1213
                     /locus_tag="VF788_02650"
     CDS             911..1213
                     /locus_tag="VF788_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019812395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HEX8933095.1"
                     /translation="MSTVASMAPIHPGEILAEDYLAPLGITQHGLAVAIHVPPRRINE
                     IVHGKRRISADTALRLARYFGTSERFWMNLQGRYDLEVERDRLVSVLDEIHPRASA"
     gene            complement(1708..>1895)
                     /locus_tag="VF788_02655"
     CDS             complement(1708..>1895)
                     /locus_tag="VF788_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933096.1"
                     /translation="SAPLSCPQHRHHAGVLNGHTTGGADALHVHSLDEDDVDVASVGN
                     LERALGTGHSMQRGQMP"
BASE COUNT          363 a          599 c          580 g          353 t
ORIGIN      
        1 ctacgctggc cagctcggct ttgagctggc gcccgatttc aagcttgctg gcgggcacct
       61 cgggccgtgg ccggagacca gcgcgatcac gttcggacgc cacggcgtcc cgttctacat
      121 ctcgggccct tcgacaaccc agcccgagta gtccgcgccc tgaccagatc ggtgggcgag
      181 ggcaacttcc attgcattgc gcatgtcaag gccgcagcca gctggtgatc tacaacagtg
      241 gtcacgacag cggatagccg agcgttcgca atcccttgca gaagccggtg attgcgtgtt
      301 ccagaagtct gtctgcgcgt gtgacctggg tgatcggtcg ttttccatca acccaaatcc
      361 tcgctgcgcc aggcaggctg tcggctgtga cccgcgagtt gaccaaccgc tgcctatcct
      421 ggctggatgg gagcggtacc gtcggtgaca ctggacattg tggcccaagc gcggtcggtg
      481 cggttgcggc tgtccggtga gctgtggctg ttcgtggcgc cgctgcaccg gctggagcaa
      541 gtcgagatac accatggtga cgttcggtca cgcccataac gtggcgtggt aataacgcag
      601 cgcgttatac tggctcgtgc tgcgttcttt cgccgacaag gacaccgaac gagtctggcg
      661 acgcgagcgc tcacgtcggc tcgaccagca cacccagcgc gcggcgctgc gcaagctgtt
      721 gatattggat gcggcagaga ccctcgacga cgcggggatc ccgccgggta accgactgga
      781 gaagctccgt ggagaccgtt ccgggcagta cagcatcagg gtgaaccagc agtggcgcat
      841 ctgctttcgc tggagcgccg caggaccgga agacatcgag atcaccgact accactgaag
      901 gagaaacctc atgagcaccg tggcctcaat ggcccccatc catcctggcg agatcctcgc
      961 cgaggactac ctcgctccac taggcatcac ccagcacgga ctagccgtcg ccattcacgt
     1021 accgccacgc cggatcaacg agatcgtgca cggcaagcgg cggatcagcg ccgacaccgc
     1081 actgcgcctg gcccggtact tcggaacctc cgagcgcttc tggatgaacc tccaaggccg
     1141 ctacgacctt gaggtcgaac gcgaccgtct cgtatccgtc ctcgatgaga tccatccacg
     1201 cgccagcgct tgagtgcctc ctggcgcgta ggtccgcgat gcgcgaggca tcgcgcgcac
     1261 cagccgaggc accacgcttg ctgggagcca gaccacgcgt cttgatcggt gtgtcccgtc
     1321 gtcgaccgac cagagagacg cctgctcggc cctcaccgag gcgtccaccc ccgaagatcc
     1381 gcacctgaca agtgcgcccc atgcaggacg ccggtcaagt tacgtcggag gttcgtgcgg
     1441 accatacggc tgatgttgac agccgaattg gacagtcagt tggacacaga caggcgacag
     1501 attatcatga tgatcattta tcctggtcaa agatggtggc caggggcggg gtcgaaccgc
     1561 cgaccttccg attttcaatt caaagtccat tcgataggag taggattacc tggcattctg
     1621 cttgccgtag ttgcgtcata gaggcattag aagcactcag agcactggag ttattgggca
     1681 gtccgttgga caccctacga tgggacacta gggcatctgc ccacgctgca tgctgtggcc
     1741 agtacccagc gcgcgctcca ggttgccgac tgacgcgaca tcaacatcat cttcgtcgag
     1801 tgaatgaaca tgcagggcat cggcccctcc ggtggtatgt ccgttgagca cgcccgcgtg
     1861 gtgcctatgc tggggacatg acagcggcgc gctct
//
LOCUS       DASVXZ010000135         1750 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_14376, whole genome shotgun sequence.
ACCESSION   DASVXZ010000135 DASVXZ010000000
VERSION     DASVXZ010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14376"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(316..648)
                     /locus_tag="VF788_02660"
     CDS             complement(316..648)
                     /locus_tag="VF788_02660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933097.1"
                     /translation="MTVVAPQLWAVTVRGPDGSRYPARHVCEDINRLDAFRTHLLAIA
                     RIERPGGTDSGESWIGDYELEIRAPGKEQEIQSSRCAGGRNDDFSDWFMWYLISLESV
                     VDRIPVRS"
     gene            complement(746..1522)
                     /locus_tag="VF788_02665"
     CDS             complement(746..1522)
                     /locus_tag="VF788_02665"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8933098.1"
                     /translation="MWYEWSYSTWRHVDLDVGVLTVERSIGQRSGRTCEKDTKTHQHR
                     RIALDPKTVSLLGDHRARCDERAVALGLALNDDAFVFSLALDGSAHLRPDSVSQRYAR
                     LVRRLGISTTIHKLRHYSATELISAGVDVRTVAGRLGHGSGGTTTLKVYAAWVSESDQ
                     RAATSLFARLPTRPDAADASARCASDADAVYPQIAAELRARIASGELPVGAQLPTHKQ
                     LAEQHGISAGTAHRVTALLCRGPCRGEPGSPDHGCPRSPP"
     gene            complement(1584..1657)
                     /locus_tag="VF788_02670"
     tRNA            complement(1584..1657)
                     /locus_tag="VF788_02670"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1621..1623),aa:Thr,seq:cgt)
BASE COUNT          324 a          565 c          539 g          322 t
ORIGIN      
        1 tgacacttta ttgacctgcg aattctcaga tacctggtac gtaaagattc tcacccgggg
       61 aggtcaaacg tcacagcccg atcatgtcga acatcctgat cggctacgcg ccacgtgaca
      121 ccctgcccgc tcaccagccc gagaactttc tctagcgtcc cgcataaata gatcatgcac
      181 agtgcccaat gcccatccat aggatcgaag gcgcgctcat cggcaaatga gtacattgca
      241 aatgttcgca ggctccctga acgggtcaga cgtgggtcgc acgagaccgg agcggtctac
      301 cgtgcacatc agtgctcacg accttactgg gatccgatca acaacggatt ccaacgaaat
      361 gaggtaccac ataaaccagt cactaaagtc gtcatttcgc ccgccagcgc agcgtgagct
      421 ttggatctcc tgctccttgc cgggcgcacg gatctcaagc tcgtagtcgc cgatccagct
      481 ttccccgcta tcggtccccc caggccgttc gattctcgcg atggcgagca ggtgcgttcg
      541 aaacgcgtcg agccggttga tgtcttcaca cacatgtcga gccggatagc ggctgccgtc
      601 aggcccgcgg acggtaactg cccacagctg cggcgctacc acagtcattg tgctcccgct
      661 aacactctcc cggggacggt cctcgctcgg ttcgtcgccg ttccccggaa ctgcttcgta
      721 cgcagccgga gcactctggt cagcgtcaag gaggggagcg cggacaaccg tggtccggcg
      781 accccggctc acctcgacaa ggccctctgc acaacagcgc ggtaacgcgg tgagccgtgc
      841 cggctgagat gccgtgctgc tcggcgagtt gcttgtgcgt gggtagctgc gcgccgacgg
      901 gtagctcacc tgaggcaatc cgcgcacgca actcagcggc gatttgtggg tatacggcgt
      961 cagcgtcgct ggcacaacgg gctgaggcat cagccgcgtc aggccgggtg ggtaggcgag
     1021 cgaacaggct cgtcgcggcc cgctggtcgg actccgacac ccacgccgca tagactttca
     1081 gcgtcgtcgt gccaccactg ccgtgcccga gccgcccggc gacggtacga acgtcaaccc
     1141 ctgcggagat caactcggta gcggagtagt gcctcagctt gtggatcgtg gtcgagatac
     1201 cgagacgccg gacgagtcgg gcgtagcgct ggctgaccga gtccggccgt aggtgtgcag
     1261 acccgtcgag tgctagcgag aacacgaagg cgtcgtcgtt gagcgctaat ccgagcgcta
     1321 ccgcacgctc gtcgcaccgg gcccgatgat cgccgagcag ggaaaccgtt ttggggtcga
     1381 gtgcgatgcg ccggtgctga tgggtcttgg tgtccttctc acaggtccgt ccgctgcgct
     1441 ggccgatgct ccgctccacc gtcagcacac caacgtcgag atcgacgtgg cgccacgtac
     1501 tgtagctcca ctcgtaccac attccgcacc acgcgagtcg gttgcactct cagcctgagt
     1561 gtgttttccc aggtgagagg cggagccgcc tcggggaatc gaaccccgga cctgctcatt
     1621 acgagtgagc cgctctggcc gactgagcta aggcggcaac gtggccggca agcgcagtca
     1681 gtgtagcggg gaggcctttg gttacgcggc ggccctaccg cggtaagggc ttcactggct
     1741 gtgcagcgcg
//
LOCUS       DASVXZ010000136         2986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_641836, whole genome shotgun sequence.
ACCESSION   DASVXZ010000136 DASVXZ010000000
VERSION     DASVXZ010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641836"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..266
                     /locus_tag="VF788_02675"
     CDS             <1..266
                     /locus_tag="VF788_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933099.1"
                     /translation="INNSVVAGRDVDQSSHYDNHSRVYDSFNTDNSRHSVDISDDHSY
                     HSNIDDSFNRDHHDINDSFNNEHHDLLDLDVKADHLLNLGDIH"
     gene            452..1228
                     /locus_tag="VF788_02680"
     CDS             452..1228
                     /locus_tag="VF788_02680"
                     /inference="COORDINATES: protein motif:HMM:NF038175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IniB N-terminal domain-containing protein"
                     /protein_id="HEX8933100.1"
                     /translation="MLTVSSLIDFLINLLRDPAAQAQFEQDPHGMLLQHGLGSLSAQD
                     VQDVLPMVADHECVHVKDGYHASGHHVAYHGDDPVRAISQITQHYEVKNVVMNDSHDY
                     NLTYVDDRHYVDDHSDHSASIQAGGDVTVNDSFHDGSDNTVVNDSFNKDNHGVDNTGG
                     TINNSAVAGHDLDNSQNSDNHSTVSNSHNSDNSETNVQASDDHSTGTHVQDSYNHEDT
                     DVTHVDGTQAQDEHSLSEHSLDEHHLDDEASHHDLAVHPA"
     gene            1365..>2986
                     /locus_tag="VF788_02685"
     CDS             1365..>2986
                     /locus_tag="VF788_02685"
                     /inference="COORDINATES: protein motif:HMM:NF012570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEX8933101.1"
                     /translation="MTASAPVAAVDLALAAIAQYRRPDLDTRLRQTRARLLDGQVRVL
                     VVGEFKQGKSLLVNGLVSAPVCPVNDDVATSVPTVVRHSDQPVAALVRLLNAGGGGED
                     DPGRQQAERVELPIEKLVEHVSESGNPGNRERWSHAEVGLPRRILTGGLEFVDTPGVG
                     GLSSVHGAATMAMLPSADAVLLVSDASQEYTRPELEFLSQAAKVCPNVACVLTKIDLY
                     PEWRRIADLDRAHLSAVNIDAELLAVSSTLRVQSIQTQDADLDAESGFPALISYLREH
                     VVSEADLLARRSTAHDVLAVTQQLAGGLRAEQLAQQDPATAQGVIKQLTEAQKCFAAL
                     KERSARWQHTLSDGITDLTADIDYDLSDRMREILRQAEEEAERSDPTKTWAQLSNWVE
                     QEVASAVSANLVWATQRARWLATRVADHFSEEENRLLPKLRTEVADVLGSVRAMQLRQ
                     GGESFGVGQKALTGLRGGYVGVLMFGMLGTFVGLSLLNPISVGAGLLMGGKTLKDERR
                     RIVTRRQQEAKVAVRRYVDDVKFQASKESRDML"
BASE COUNT          592 a          966 c          942 g          486 t
ORIGIN      
        1 caatcaacaa cagcgtcgtc gccggccgcg acgtcgatca gtcgagccac tacgacaacc
       61 actcccgcgt ttatgactcg ttcaacaccg acaacagtcg gcacagcgtc gacatttccg
      121 atgaccacag ctaccacagc aacatcgacg actcgttcaa ccgggaccac cacgacatca
      181 acgactcgtt caacaatgag caccacgacc tcctggacct cgatgtcaag gcggatcacc
      241 tgctcaatct cggcgacatc cactgacgcg cgacgggatg ggcgagctct ttcagcagcg
      301 ttgacgacgg ccgggcctgc cgccttcccc tcgggggcgg cggccccgtg ccggagtctt
      361 ctgcccggca ccggccgact catctgattt gtggtacttg gacccgtgca ataaacctgc
      421 tcaatacgaa gaaggaatgg aggtgaccga aatgctgact gtttcctcgc ttatcgattt
      481 tctcatcaac ctgctgcggg acccggctgc ccaggctcag ttcgagcagg acccgcacgg
      541 catgctccta cagcatggcc tgggctctct gtcggctcag gacgtccaag acgtgctccc
      601 gatggtggcc gaccacgagt gtgtgcatgt caaggacggt tatcacgcgt cgggacacca
      661 cgtggcatac cacggcgatg acccggtccg ggcgatctcg cagatcaccc agcactacga
      721 ggtcaagaat gtggtgatga atgactccca cgattacaat ctgacctacg tcgacgaccg
      781 ccattacgtg gacgaccact ctgaccattc cgcgtcaatc caggccggcg gcgacgtcac
      841 cgtcaatgac tcgttccatg atggcagcga caacaccgtg gtgaatgatt cgttcaacaa
      901 ggacaatcac ggtgtcgaca acacgggtgg cacgatcaat aacagtgccg tggccgggca
      961 tgacttggat aattcccaaa actcggacaa ccacagcact gtcagcaact cgcacaacag
     1021 cgacaacagc gagacgaacg tccaggcatc cgacgaccac tccaccggga cccatgtcca
     1081 ggattcgtac aatcacgagg acaccgacgt gacccacgtc gacggaactc aagcgcaaga
     1141 cgagcactcc ctcagcgagc actcccttga tgagcaccac ctcgacgacg aggcaagcca
     1201 ccatgacctg gctgtgcacc ccgcctgagt ccaggcgatc cgcaaggacc cacacgggct
     1261 accctcccgg gtgagctgag gcagtaccca gttccgccac cctccttata acgaagggtg
     1321 gcggaactgc tcgctgcacg gtaggcgagg atgaggagga gctagtgacg gcatcggcgc
     1381 cggtcgcggc cgtggatctg gcgctggcgg cgatcgccca gtaccgccga cccgacctgg
     1441 acacccggtt gcggcagacc cgggcccggt tgctcgacgg acaggtccgg gtactcgtgg
     1501 tcggagagtt caagcaaggc aagagcctgc tggtcaacgg gctggtgagc gcgcccgtgt
     1561 gccccgtgaa cgatgatgtg gccacgtccg tgcccaccgt ggtccggcac tccgaccagc
     1621 cggtggccgc gctggtccgg ctgctcaacg ccggaggtgg gggggaagat gaccccggtc
     1681 ggcagcaggc tgagcgcgtt gagctaccca tcgaaaagct cgtcgagcac gtgtcggaga
     1741 gtggcaaccc cggtaatcgg gagcgttgga gccacgccga ggtcggcctc ccacgccgga
     1801 ttttgaccgg tgggctggag tttgtggaca cgccaggagt cggcggcttg agctccgtgc
     1861 acggcgccgc gacgatggcc atgctgccct ccgcggatgc tgtcttgctg gtgtcggacg
     1921 cctcgcagga gtacacaaga cccgagctcg agttcttgag ccaggccgcc aaggtctgcc
     1981 ccaacgtggc gtgcgtactc actaagatcg acctgtaccc ggagtggcgg cgcattgccg
     2041 acctggaccg ggcgcatctg tcggcggtga acatcgacgc cgagctactg gccgtctcct
     2101 cgaccctacg ggtgcagtcg atccaaaccc aagacgccga tcttgacgcc gaatcgggtt
     2161 tcccagccct gatcagttac ctccgcgagc acgtggtgag cgaggcggac ctgctggccc
     2221 gccggtcgac ggcgcacgac gtgctggccg tcacccagca gctggccggc gggttacgcg
     2281 ccgagcagct tgcccagcag gacccggcca ccgcacaagg agtcatcaag caactgactg
     2341 aggcccagaa gtgcttcgcg gcgctgaagg agcgttccgc gcgctggcaa catacgctca
     2401 gcgatggcat caccgacctc accgcggaca tcgattatga cctgtccgac cgtatgcgcg
     2461 agatactgcg gcaggcggag gaagaggcgg agcgcagcga cccgacgaag acctgggccc
     2521 agctttcgaa ctgggtcgag caggaggtgg cgtctgcggt atcggcgaac ctggtctggg
     2581 ccacccagcg ggcacgctgg ctggccaccc gggtcgccga ccacttctcc gaggaggaga
     2641 accggttgct gcccaagcta cgtaccgagg tcgccgacgt cctgggctcg gtgcgcgcta
     2701 tgcagctgcg ccagggcggc gaatcgttcg gcgtcgggca gaaagcgctg accggactgc
     2761 gtggcggcta cgtcggggtg ctgatgttcg gcatgttggg gaccttcgtc gggctgtcgc
     2821 tgctcaaccc gatctcggtg ggcgcgggtc tgctgatggg tggtaagacg ctcaaggacg
     2881 agcgccgccg tatcgtcacg cgacggcagc aggaggcgaa ggtagcggtg cgccgctacg
     2941 tcgatgatgt gaagttccag gcgagcaagg agtcccggga catgct
//
LOCUS       DASVXZ010000137         3109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_903690, whole genome shotgun sequence.
ACCESSION   DASVXZ010000137 DASVXZ010000000
VERSION     DASVXZ010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_903690"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1075..1512)
                     /locus_tag="VF788_02690"
     CDS             complement(1075..1512)
                     /locus_tag="VF788_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933102.1"
                     /translation="MTLVPSDVPDRAIDEDEGPSGPSSWVPRWLRRQREADDLAQWAS
                     QVARQWTDTMDTAQLAQHGQSAAKLPITVAPHVESVDPGPPMTMLVRMLPGQSADDFQ
                     DKTELIASMMQVSEVQITPFDDGLINVVLLDHDLYSEVSPPPA"
     gene            complement(1658..1981)
                     /locus_tag="VF788_02695"
     CDS             complement(1658..1981)
                     /locus_tag="VF788_02695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933103.1"
                     /translation="MEDQVHRHCESLRPGQGAVEHRQSRHAEEIDSRQVEDQRDRLVL
                     QFAVQARTEHGRRYGIDFADPLYDDQIPSWPVHSYTEHASALQPVASSPQIQKSHLIP
                     NIARG"
     gene            complement(2055..>3109)
                     /locus_tag="VF788_02700"
     CDS             complement(2055..>3109)
                     /locus_tag="VF788_02700"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEX8933104.1"
                     /translation="VRRAPQRVGARGTVSKLRAGNGDPTSTPPAPMLSQTASPVAAAE
                     QVSPASPERPLPAVVINPSHVDDLPGLHTKIAKVCEELGWSPPLWLTTTVEDPGGGQT
                     RIALDASADVVLVCGGDGTVRHVARVLAGSGTPLGLLPTGTANLLARNLAVVLNNPVK
                     ATRIALTGTNRAIDVGRVLIDDRDEEEVFLVMAGMGFDAAIMAGAPHQLKARLGPLAY
                     FVAGARALMAPRAPITLAVDGRSELPRQVRTVVVGNCGKLLAGLRLLPAAKVDDGLLD
                     VVAIGPKTVRGWLAVTARVLGRRRHGHRIVQHWQGRIIILSAETPQQAQLDGDPVGEV
                     LAMRMRVDPGVLLVRV"
BASE COUNT          538 a         1026 c         1015 g          530 t
ORIGIN      
        1 gggttgcttc ggtcaacgtt cgcgatatca cgcacgtcgg atggtgtgta ctaactctat
       61 gttgatcggg gtcgatgatc gcggatggtc ggaattcgac gcgtccgcgc ggatggtgac
      121 atccagccct ggaggtgcac ctgttggtga tgggcggcgc atagcaggca gcagttgttc
      181 accgtggtca gcccgttgtg atccagtgct gcagatggtg cgccgtgcaa actcccggtg
      241 gccgatcgca gccgggaaaa acacacccgc cattccgggc gaccagggcg cagcgaatgc
      301 ctatcggaac ggtgcgcatc gcgcggccaa catcaagagg ctcggactcc cccatgacga
      361 ccggaatcac cttacagcca tcggggaccc tggcgggtcg gcgtgatctc atcgagtgct
      421 cggcgggcga cggcgagggg gaaaccgacc gatgtcacgc tcaagttggc gaacaagggg
      481 aaccgccaca gcgggccggc gtggtgcggt gagttctcga gcgggttgac gaacagctcg
      541 gcggcacccg caacccgttc aggacgaggt cgtactgccg ctgccgcgca ggccggctcc
      601 gtcccaggtg tcgaggatcc aatccgggtt ggtcggcagg tatgccatcc tccaactggg
      661 gcccgccacc ctcatccatc gtcggtgtcc cgtctgcgtc caagacgacc gcggccagct
      721 ggcagaaccg ggcatgccga acgccggtgt tgaacgctca ccgccggtga tggtgtgcca
      781 ccggtaccat ccggcattgc tgagccgcta ggcgcgatca tgcacgtcga cgcaccgtag
      841 gggcggccag ggatcagatt ccgggcggcg ccgggttcca gccaggcgaa gaacgccgtg
      901 ctcgcaccga gggtagtcca gccagcggac ccatccgcgt aacttatctc ctcggtgatc
      961 cggacggtga tccggacgat gctcgccggg tccggctcga gaccgcccaa ggcatgtaac
     1021 cataaggcga acagcccggc tgccctcgac ccgctcagcc agcgccgggc tggatcatgc
     1081 cggtggggga gacacctcac tatacaaatc atgatccagt aagaccacat tgatcagacc
     1141 gtcgtcgaag ggcgtgatct ggacctcgga cacttgcatc atagaggcga tgagttcggt
     1201 cttgtcctgg aagtcgtctg cggactgacc gggcagcatt cgcaccagca tcgtcatggg
     1261 cggccccgga tccaccgact ccacgtgcgg tgccaccgtg atgggaagct tcgcagcgct
     1321 ctggccgtgc tgggcaagct gagcagtgtc catcgtgtcg gtccactgcc gtgccacctg
     1381 actggcccac tgcgccaggt cgtcagcttc gcgctgccgc cgcaaccaac gaggtaccca
     1441 ggaggaagga cccgacggtc cctcgtcctc atcgatggcc ctatccggca catcgctcgg
     1501 tacgagtgtc atggtggtcc tccttatcct gactgcatcg ggggcgtgcg ctgtttgtag
     1561 cccccgtacc ccggtacgta cccatcgggg aatgcttcaa acaccctccg ccatcgtctg
     1621 ggccgccatc acccggattg gcgcaaggca aggaagttta gccccgcgcg atattgggaa
     1681 ttaggtggct cttttggatc tgcggtgatg aggcaacggg ctggagcgca gaagcatgtt
     1741 cagtgtacga gtggaccggc cagctgggga tctggtcgtc atacaggggg tcggcgaagt
     1801 cgattccgta acggcgccca tgctcagtac gtgcctgcac cgcgaactgg agcaccagcc
     1861 ggtcacgttg gtcctcgacc tgacgggagt cgatttcctc ggcgtggcgg gattggcggt
     1921 gctcgactgc gccttggccc gggcggagac tctcgcagtg acggtgaacc tggtcttcca
     1981 cgaccagtcc gccgtgctct ccgcgctgcg agcggcagca ccgacgggcc tgttccccca
     2041 ctgcgtaact gggatcagac gcgcaccagc agaactcccg ggtcaacgcg catccgcatc
     2101 gccagcacct ctcccaccgg atcgccatcc agttgagcct gctgtggggt ctccgcactg
     2161 aggatgatga tgcggccttg ccagtgctgc acgatccggt gaccatggcg gcgacggccc
     2221 agcacccgtg cagtcaccgc cagccatccg cggacggtct tcggtccgat ggccacgaca
     2281 tccagtagcc cgtcgtccac cttcgccgcg ggcagcaggc gcagcccggc aagaagcttg
     2341 ccgcagttgc cgaccactac tgtgcggacc tgacggggca gctccgatcg gccatccacg
     2401 gccagcgtga tcggagccct cggagccatc aatgcgcggg ctccggcgac gaaatacgcc
     2461 aacggaccca gccgcgcctt taactggtga ggcgcgccgg ccatgatcgc tgcgtcgaaa
     2521 cccatcccgg ccatcaccag gaatacctcc tcctcgtcac ggtcgtcgat gagcacccga
     2581 ccgacgtcga tcgctcggtt ggtcccggtc aacgcaatcc gggtggcttt gaccgggttg
     2641 ttcagcacga cggcgaggtt gcgagccagc aggttggcgg tacccgtggg cagcagaccc
     2701 aacggggtgc ccgatccggc gaggaccctc gcgacgtggc ggacagtacc gtccccgccg
     2761 cagacgagca ccacgtcggc gctggcgtcc agcgcgatgc gggtctgacc gccaccaggg
     2821 tcctcgacgg tggtcgtgag ccacagcggt ggtgaccagc ccaactcctc gcacacttta
     2881 gcgatcttgg tatgcagccc gggtagatcg tcgacatggc tgggattgat caccactgcc
     2941 ggcagcgggc gttccggcga ggcgggggac acctgctcgg ctgctgccac cggggatgcg
     3001 gtctgcgaca gcatcggagc aggcggagtg gatgtcgggt ccccattgcc tgcccgcagc
     3061 ttgctcaccg tgcctcgcgc tcccacgcgc tgcggcgcac ggcgaacag
//
LOCUS       DASVXZ010000138         2316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_373584, whole genome shotgun sequence.
ACCESSION   DASVXZ010000138 DASVXZ010000000
VERSION     DASVXZ010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2316
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373584"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2316
                     /locus_tag="VF788_02705"
     CDS             <1..>2316
                     /locus_tag="VF788_02705"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8933105.1"
                     /translation="VRWTAAGQLEFMGRTDEQVKIRGYRIELGEVSSALLTHPDITQA
                     VVSLASHEGRPYLLAYLVPEGSRDAPSIEALREFASGLLPDYMLPSAVQVLPSLPLMP
                     SGKVDRRALPAPEHGPSPTAGYVPPSTPMERQLAEVWAGVLGVQQVGVHDNFFELGGD
                     SILSIQVVSRARQAGLRLTSKDIFLHQSIAALAPLVGDLDTGVQDAAPVEGPAPLTPV
                     QHWFFSTYGELAHFTMSTVLELAEDPEENALRTALEAVVAHHDALRLRFESTEGQWRQ
                     QCRATVPSGVLTHRDLSALTEAQQQATMVEAADAARADLDLDAGRLIKAVLFTRPQQR
                     AVLLLTVHHLAVDGVSWRILLHDLNTAYQQARSGCEVTLEPTGTAALTWAHELADHTR
                     SGALDGDLDYWMQVSRDAQVDLPVDRAGVHTAGSTRQVTVRLGAAQTGALLYQVPGVY
                     RTQINDVLLSALGRVLSGWTGRERVLITLEGHGREEILDGIDLSRTVGWFTSQFPVAL
                     TMSPGLEDPEDADWRAVLTSVKEQLRALPHRGLSYGALRELSAQDSPAVALRGDPQPQ
                     ISFNYHGQWDPTAAADGLFQPQGETLGTDLAPDQPTPHLVEVTGVVEAGELALTWLYS
                     DQIHDEATIRRLAEDMIGALRGIVEHCAEPGAGGRTPSDFPLAHLDQAGVDRLVGDGQ
                     SVEDIHPLTPLQAGILFHSLVDADSAAYVDQARLLLEGVSDPHALGAACQRVADRTPA
                     LRSALVWDGVDEPLQVVHRQLPVPTTYYDWRA"
BASE COUNT          361 a          807 c          791 g          357 t
ORIGIN      
        1 gtgcgctgga ccgcggccgg gcaactggag ttcatgggcc ggacggacga gcaggtcaag
       61 atccgcgggt accgcatcga gctgggcgag gtgtcctcgg ccctgctcac acacccggac
      121 atcacccagg cagtggtgag cctggccagt cacgaggggc gtccctatct gcttgcgtat
      181 ctggtaccgg agggctctcg cgacgccccg tcgatcgagg cgctgcgaga gttcgccagc
      241 gggctgcttc cggactacat gctgccctcg gcggtgcagg tcctgccgtc cttgccgctg
      301 atgcccagcg ggaaggtcga ccggcgggcc ctgccggctc ccgaacacgg cccgtccccc
      361 accgccggct acgtccctcc gagcaccccg atggaacgcc agctcgccga ggtctgggcg
      421 ggggtgctgg gagtgcagca ggtcggggtg cacgacaact tcttcgaact gggtggggac
      481 tcgatcctga gcatccaggt cgtctcacgg gcccgtcagg ctgggctgcg gctgacctcc
      541 aaagacatct tcctgcacca gagcatcgcc gctctcgccc ccttggtcgg cgacctcgac
      601 accggcgtgc aggacgccgc acccgttgag gggcccgccc cgctgacacc tgtccagcat
      661 tggttcttca gcacctacgg ggaattggcg cacttcacca tgtccaccgt gctggaacta
      721 gccgaggacc ccgaggagaa cgcgctgcgg accgccttgg aggcggtcgt ggcgcaccat
      781 gacgcgctcc ggttgcggtt cgaaagcacc gagggccagt ggcgccagca gtgccgggcc
      841 accgtcccga gcggggtcct gacgcaccgc gacctgtccg cgctgaccga ggcacaacag
      901 caggccacca tggtggaagc ggccgacgca gctcgagccg acctcgacct ggatgccggc
      961 cggttgatca aagcggtgct gttcacgcgc ccgcagcagc gggctgtgct gttgctgacc
     1021 gtccaccacc tcgctgtcga cggtgtgtcc tggcgcatcc tgctccacga tctgaacacc
     1081 gcctaccagc aggcccgcag tggctgcgag gtgacgctgg aaccaaccgg caccgccgcc
     1141 ctcacctggg cccatgagct ggccgaccac acccgctccg gtgcgctgga cggagacctg
     1201 gactactgga tgcaggtatc ccgggacgcg caggtcgacc tcccggtcga ccgcgccggg
     1261 gtgcacactg ccggttccac ccggcaggtc actgtgcggc tcggggccgc acagaccggc
     1321 gccctgctct accaggtacc cggcgtctac cggacccaga tcaacgacgt cctgctcagc
     1381 gccctgggtc gcgtgctgtc cgggtggacc ggccgcgaac gggtgctcat cacgctggag
     1441 ggacacggac gcgaggagat tctcgacggg atcgatctgt cccgcaccgt cggctggttc
     1501 acctcgcagt tcccggtcgc gctcaccatg tccccagggc tggaggatcc cgaggatgcc
     1561 gactggcggg cggtactgac ctcggtcaag gaacagctcc gtgccctgcc acaccggggt
     1621 ttgagctacg gggcattgcg cgagctgagc gcgcaagatt ctccggcggt ggcgttgcgt
     1681 ggcgatccac agccgcagat atcgttcaac tatcacggcc agtgggaccc gaccgccgcc
     1741 gcggacgggc tgttccaacc tcagggcgag actctcggca ccgacctggc acccgatcag
     1801 ccgacgccgc atctggtgga ggtcaccggg gtggtggagg ccggggagct ggcgctgacc
     1861 tggctgtact cggatcaaat ccacgacgag gccaccatac gacggcttgc cgaggatatg
     1921 atcggggcgc tacgagggat cgtcgagcac tgcgccgagc caggagccgg cggccgcacc
     1981 ccgtcggatt tcccgctggc ccacctcgac caagccgggg tggatcgcct ggtaggagac
     2041 gggcagtccg tggaggacat ccacccgctg acgccgttgc aagcaggcat cctgttccac
     2101 agcctggtcg atgccgactc ggcggcctac gtcgatcagg cacggctgct gctggaggga
     2161 gtgtccgacc cgcatgcgct gggtgcggcc tgccagcgag tggctgaccg gacaccggcg
     2221 ttgcgcagcg cgctggtgtg ggacggggtc gacgagccgc tgcaggttgt gcaccgccag
     2281 ctccccgtgc cgacgacgta ctacgactgg cgcgct
//
LOCUS       DASVXZ010000139         2344 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_724314, whole genome shotgun sequence.
ACCESSION   DASVXZ010000139 DASVXZ010000000
VERSION     DASVXZ010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724314"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..483
                     /locus_tag="VF788_02710"
     CDS             52..483
                     /locus_tag="VF788_02710"
                     /inference="COORDINATES: protein motif:HMM:NF014430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8933106.1"
                     /translation="MLAIPGCGVLAAAMILGETAGVHRFRSRDAYARFTGTAPIPVWS
                     GNTAGKARLNRGGNRTLNSALHMIAVTQSRGIGPGAAYLDKLTAGGKTRTEAIRLLRR
                     RVSDAVYTALRADERNHALDSASQQRTGPDTSLAEPIHPAA"
     gene            1065..1232
                     /locus_tag="VF788_02715"
                     /pseudo
     CDS             1065..1232
                     /locus_tag="VF788_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006770492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          413 a          719 c          805 g          407 t
ORIGIN      
        1 aacgccctgc accgtgagct tcgtgacctg gttaaacgcc tggcccctac ggtgttggcc
       61 atccccggct gcggggtgct ggccgcggcg atgatcctcg gtgagaccgc tggagtgcac
      121 cggtttcgct cccgcgacgc ctacgcccgg ttcaccggca ccgcccccat tccggtgtgg
      181 tcgggtaaca ccgcgggcaa ggcccggctc aaccgaggcg gcaaccgcac cctcaacagc
      241 gcgctgcaca tgatcgcggt cacccaatcc cgaggcatcg gaccgggagc ggcctacctg
      301 gacaagctca ccgccggcgg caaaacccgc accgaagcga tccggctgct gcgccggcgc
      361 gtctccgacg ccgtctacac cgccttgcgc gccgacgaac gcaaccacgc cctcgacagc
      421 gcatcacagc agcgcaccgg ccccgacacc agcctcgccg aaccgatcca cccggcggct
      481 tgatctttct cccgccttgc ctccgccgat ttgtgagtgc gccggggatc aggcgacggg
      541 gtcaaggagc ggcccggcag ggccgaccgc gcagcggccg tgaggtcctt gaccccgccg
      601 ccgcgcggcg cacaatgccc cggcggagcg aaaggcgaac gcgagttgac ataggagcat
      661 tccgaagcaa taacaatagt gccctgacca gtgcattttc aacggtttga tctgttcagg
      721 catcacacag gatccacgga agtccgtcgt aatacgtggt gattgtcacg cagttcgtca
      781 cgcacccgca tacacgataa tcatgaccat atacggtaat cttcgtgtga acggcacacc
      841 cagcctggtt cacgtggtgg tctttgccgc ccgcgcgaga cccgtcgatc agtcccgaat
      901 gctggttcat tccacagcgc ctataattta ttagggaacc agccgacgcg acaacttgtc
      961 catcacgact ggcgatcatg gccgcatcat tcggccctcg cctccgaggc cacagaccgg
     1021 ctcggcggac tgatccacga atatgcccag gtcgcctcat gcggatgacc tattcggcac
     1081 ccacaggggt gaaaatcccc ccgactaccc gaccaccgga ggtgatcacg ctcgcggttc
     1141 gctggtactt gcgttacggc ctgtcgtatc gcgacctgga ggagctgctc gccgagcgag
     1201 gcattaccgt cgatcacgtc accgtctatc gctgagtgcg gcggttcacc ccgttgttga
     1261 ttcgatgcgg cccggccttg ccggcattgc cccggtgcga ggtggtttgt ggatgggacg
     1321 gtgtgccgtg aggcgcggtg tgtctgagcg ggggtgagag gactccgtcg cctggttgtc
     1381 gtagcagctg ggttgaggct gagggcagtt tgacctggga ggtgctgggg agggcgggga
     1441 gtggccctga caacgacggg acgtgccggt attgccagag ggtgcgggtc cggcaagcga
     1501 gacgggaagg tgtaggagag aaaccagtgt tgacgttccg taagcgacga accggttcca
     1561 acctggtgga tatgggccgg ggtgtagtgc gtgatcgctg ggatgggtgg gcggtcgact
     1621 ccgaagccgg ggagtttcgc cggtgggggg ccatggtgaa ggtctgcggc gtagccgtgg
     1681 cgatgctgcc gggacaaagc tgggcatctc tctcgtcgat cggtacatcg tgaacgcggg
     1741 aaccatctac ggtcgcccta ccggcggggg atccagctcg gccgggggca ggctcgtcgt
     1801 tggctgaggg ctgtggatgg ggcggaggcc ctggagtagt tcgagcggag gaaagcttcg
     1861 tagttggcga agggggccag caagttagca gggaggatgc tggaatgcct ggaggtcatc
     1921 ggtgaacacc gatgaactgg agcatcggct gtatcgggct gagcgagggg tagggggaga
     1981 tccagaccaa gctgcaccgg tgggcgaccg acgacccaac gggacttgtg gagagccgga
     2041 tgcccggcca acgggcacgt ccggttcggg aggctgcccg gagaaaccca ccagtagaaa
     2101 cactggcagg gcgctccggg tcgacctcac tagtgcgcca cgaggcgccc cgccgtcggc
     2161 gcggatcggc tcgtgattgc ggcagtagta gcggtggtgg gtgccgttgt gcccgcgcat
     2221 tgtgtggcaa ttagtaccca cacggcacac gccgcacttg accaggcctt tgagcagcca
     2281 ctggccgggt tgggcgcgac gcggacccta tttgctgttg tcgacggtga cctgcccggc
     2341 ggtt
//
LOCUS       DASVXZ010000140         3594 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_463111, whole genome shotgun sequence.
ACCESSION   DASVXZ010000140 DASVXZ010000000
VERSION     DASVXZ010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463111"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..918
                     /gene="pqqE"
                     /locus_tag="VF788_02720"
     CDS             <1..918
                     /gene="pqqE"
                     /locus_tag="VF788_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018149 - peptide cross-linking [Evidence
                     IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqE"
                     /protein_id="HEX8933107.1"
                     /translation="TGGEPLARPDLVPLVSRGRELGFYVSLVTSGVGLNERRASELAL
                     AGLDHVQLSMQDADRIAAEEVAGARVFDRKLAAARMVTALQLPLTINVVLHRGNIGRI
                     EAIADLAAALYADRLELAHTQYYGWGLLNRSALLPTRDQILTAERAVAHARAVHRDTL
                     EILYVVADYHEPYPKPCMHGWGRRHIVIAPDGRALPCPAAAQIVGLDIDNVRERSLNE
                     IWHHSPTFTRFRGDGWMLEPCRSCPRKEVDFGGCRCQAFQLTGDAARTDPVCRLSPDH
                     HLVETALQNAGSAHLPLRPRSNPGSLKIT"
     gene            complement(980..1618)
                     /locus_tag="VF788_02725"
     CDS             complement(980..1618)
                     /locus_tag="VF788_02725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933108.1"
                     /translation="MRQVRHARRADPLQLLRASLIGLTALGIVGTAFELATLQHWNGV
                     MQLVPWAALVVLTGALALHAGRWPDCRPGGPSGRTRVVRALALLVLGASLFGVLEHAL
                     VNYDSGPLDQRFADTWDALSWWLRWWYAITRTVGPAPTLAPGMLGQAAATLILATIGE
                     KAVSTAARRHRRVPYPSRVPPATYPRAENLVAAAAPHRFGEFPPTSHRRPRW"
     gene            complement(1615..2025)
                     /locus_tag="VF788_02730"
     CDS             complement(1615..2025)
                     /locus_tag="VF788_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933109.1"
                     /translation="MPSMPKPVLAAIGAVILGVSLAACGGSTTADPSVAVPAAEVSYL
                     SAPGDPAPADPQPNAEKQPNVEKVSANTASEDAIAAALKTAGVASPKRWAAEVVEYRP
                     YATNDVGLAKLRENLAKYNPAQKTLDQILSTLLP"
     gene            complement(2085..2219)
                     /locus_tag="VF788_02735"
     CDS             complement(2085..2219)
                     /locus_tag="VF788_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933110.1"
                     /translation="MRPNGLADAAFGVTPESFGAHSEPMGAMAQPVLSDLAETSICLP
                     "
     gene            complement(2331..>3594)
                     /locus_tag="VF788_02740"
     CDS             complement(2331..>3594)
                     /locus_tag="VF788_02740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933111.1"
                     /translation="TGLWGLPSPTAAAHPAPFRSSRRLTGRSEVPTSTRRAPLPAKPP
                     NRWWRPLLLALLGVVALSVSVVGVSVAGALRAPGTDSVAARLAEWGRDHGFDELITWL
                     EKQQYEHNPPPTGGVPVGGIPRVGVAPPTSSDPSVTTTPPRVPAPRPLHPPPGVAPLA
                     GEGQWDTVVVVRGQPAVRVAHVRPDSQHTSFLVGVMWIDPTLVRGQLHPGFQDPGGSG
                     LAGTSLTSAEQRTVVAVFNGGFRLNGASHGGYYSQGRIARPLVEGAASLVLRADGSAT
                     VGAWNREVRMGPGVASVRQNLALLVDEGQVNPTCQSGGTAQWGSTIGQAAFIHRSGFG
                     VTAGGGEVYVGGPALSVCDLGLILQASGVVRGMELDINPNWVSGAYFISTPEGRPRGV
                     QLFPGERVAAEHYFSPSSRDWYAFYARP"
BASE COUNT          624 a         1213 c         1186 g          571 t
ORIGIN      
        1 accggaggtg agccgctagc ccggcccgat ctggtcccgc tcgtcagccg gggccgggag
       61 ctgggttttt acgtcagcct ggtgaccagt ggggtcggcc tcaacgagcg gcgggccagc
      121 gaactagccc tggcgggact cgaccacgtc cagctcagca tgcaggacgc cgaccggatc
      181 gcagctgagg aggtagcggg agcccgcgta ttcgaccgca agctggctgc tgctcgaatg
      241 gtcacagcgc tgcaactacc gctgacgatc aacgtcgtac tacatcgcgg aaatatcggc
      301 cgaattgagg cgatcgctga tctcgccgcc gcgctctacg cagatcggct cgagctcgca
      361 cacacgcagt actacggttg ggggctgctc aaccggtcag cactgctgcc gacgcgtgac
      421 cagatcctta ccgctgagcg agccgtcgct cacgcgcgag cggttcatcg cgatactcta
      481 gagatcttgt acgtggtcgc cgactatcac gagccttacc cgaaaccgtg catgcatggc
      541 tggggacggc gacacattgt catcgcacct gacggacgcg cgctgccctg cccagccgcg
      601 gcccagatcg tcgggctcga catcgacaac gttcgagagc gttccctgaa cgagatctgg
      661 caccactccc ccacgttcac ccggttccga ggtgatggat ggatgctgga accgtgccgt
      721 agctgcccgc gcaaagaggt cgacttcggt gggtgccgct gtcaggcgtt tcagctcacc
      781 ggggacgccg cacggacgga tccggtgtgc cggctctcgc ccgaccatca tctggtcgaa
      841 acagcactcc agaacgcagg atcagcgcat ctgccactgc gcccacggtc gaacccgggc
      901 tccctgaaga tcacttgacg atatcgatca ttcagagctg cgcatcacaa accttcaccc
      961 tgccgggcgg ccagcgaggt caccagcgtg gccggcgatg gctcgtcgga ggaaactcac
     1021 caaatcggtg gggcgctgcg gcggcgacca ggttttcggc acgagggtag gtcgccgggg
     1081 gaacgcggct ggggtacggg actcgccggt gccgcctggc agcggtggac acggctttct
     1141 cgccgatcgt cgcaagtatc agggtggcag cggcctggcc gagcatgccg ggcgcgagcg
     1201 tcggcgccgg gccgactgtc ctcgtgatcg cataccacca gcgcaaccac caggacagcg
     1261 catcccaagt gtcggcgaag cgctgatcga gcggcccgga gtcgtagttg accagcgcgt
     1321 gctccagcac gccgaacaac gaggcgccaa gcacgagcaa cgccagcgcg cgcaccacgc
     1381 gggtgcggcc agacggcccg ccgggccggc aatcgggcca ccgccctgcg tgtagtgcca
     1441 atgctcctgt gaggacaacc agcgcagccc acggcacgag ttgcatgacg ccgttccagt
     1501 gctgcaaggt cgccagttcg aaggcggtgc ccacgatgcc gagcgcggta agcccgatca
     1561 ggcttgcgcg tagcagctgc agcggatcgg cccgccgcgc gtggcgcacc tgcctcacgg
     1621 aaggagtgtt gacaagatct ggtcgagggt cttttgagca gggttgtact tggccaggtt
     1681 ttcccgcagc ttggccaggc caacatcgtt ggtggcgtac ggccggtact cgacgacctc
     1741 agcggcccac cgcttgggac tggcgacgcc ggctgtcttg agcgcggccg cgatggcatc
     1801 ctcgctggcc gtgttggccg acaccttctc cacgttcggc tgcttttccg cgttcggctg
     1861 cggatcggca ggtgccgggt ccccgggtgc ggacaggtag ctcacctcgg ctgctggcac
     1921 cgccacactt gggtcagcgg tggtcgagcc gccgcaagcg gccagcgata cgccaagaat
     1981 gacggcgccg atcgctgcaa ggacaggttt gggcatgcta ggcattggtc cttctcttct
     2041 gccgagggag gttggttttc gcgtggcgcc gcgcgagcgc gaccttatgg gaggcagatc
     2101 gaggtctcgg caagatctga gagcaccggc tgggccatcg cgcccatcgg ctcgctgtgg
     2161 gcgccgaaag actccggggt tactccgaac gctgcatccg ctaggccgtt cggccgcaac
     2221 cctcctcacc tttatccccg ccacgaccgc cccacgtccg atatagagcc atatcgaaga
     2281 tttgttcacc gttcacagcg caggtatggc gccatgtcgg gcgttcatgg tcaagggcga
     2341 gcgtaaaagg cgtaccagtc gcggctggac gggctgaagt aatgctcggc agcgacacgc
     2401 tcgccaggaa agagctggac cccccggggc cggccctcag gcgtcgaaat gaagtaggcg
     2461 ccgctgaccc agttggggtt gatgtccagc tccatgccac gcactacgcc gctcgcctgc
     2521 aaaatcaggc ccagatcgca caccgagagg gcgggccctc cgacatagac ctcgccgcca
     2581 ccggcggtca ctccaaaacc tgagcggtgg atgaaggcgg cctgaccgat ggtgctaccc
     2641 cattgcgctg tgccgccgct ttgacacgtc gggtttacct gcccctcgtc gaccagcagg
     2701 gcgaggttct gccggacact ggccaccccc ggccccatcc gaacttccct attccacgct
     2761 ccgacggtgg ccgagccatc cgcacgcaga accagactcg ccgcgccttc taccagcggt
     2821 cgcgcaatgc ggccctgact gtagtacccg ccgtgactgg caccgttgag gcggaatcca
     2881 ccgttgaaga cggcgaccac agtccgttgc tcagctgagg tcagtgacgt cccggccagc
     2941 ccgcttccgc cgggatcttg aaaacccggg tgtaactgcc cgcggaccag ggtgggatca
     3001 atccacatga caccgaccag gaaggacgtg tgctggctgt ccgggcgtac atgggctacc
     3061 cggaccgctg gctggccacg cacgaccacc acggtgtccc actgcccttc gccggctaac
     3121 ggcgcgacgc ccggtggcgg atgcagaggt cgcggcgcag gcacccgagg tggggtggtg
     3181 gtcacggatg gatcagatga tgtcggcggc gccaccccga cccgcgggat acctcccacc
     3241 ggcacgccgc cggtgggagg tgggttgtgc tcgtactgtt gtttctccag ccaggtgatc
     3301 agctcgtcga agccatggtc acgaccccac tcggccaacc gggccgccac gctgtcggta
     3361 ccgggcgcac gcagcgcgcc cgcgactgag acacccacaa ccgatacgga caatgccacc
     3421 acaccgagca gggccagcag cagcggccgc caccaccggt taggtggctt cgctgggagc
     3481 ggcgcacgcc gggtggacgt cgggacttca cttctcccgg tcaggcggcg cgacgagcgg
     3541 aacggcgccg ggtgggccgc cgcggtgggc gacgggagac cccagaggcc ggtc
//
LOCUS       DASVXZ010000141         6626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1539124, whole genome shotgun sequence.
ACCESSION   DASVXZ010000141 DASVXZ010000000
VERSION     DASVXZ010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6626
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1539124"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(517..1119)
                     /locus_tag="VF788_02745"
                     /pseudo
     CDS             complement(517..1119)
                     /locus_tag="VF788_02745"
                     /inference="COORDINATES: protein motif:HMM:NF007230.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            complement(1748..1903)
                     /locus_tag="VF788_02750"
     CDS             complement(1748..1903)
                     /locus_tag="VF788_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6131 family protein"
                     /protein_id="HEX8933112.1"
                     /translation="MIVLGIILLVVGYLLGIGILWTIGIILIVVGAILALLGAVGRPV
                     GGRRYYY"
     gene            2110..3213
                     /locus_tag="VF788_02755"
     CDS             2110..3213
                     /locus_tag="VF788_02755"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEX8933113.1"
                     /translation="MAVVTGLRGLSGQRRWRRAAVVIVGLAAAALAVRVLYDSSDELL
                     TAADTLTSVQPGWVLVAILVELLSYAARGGATTVVLRRAGGGVGPMVLTAATLAGDAA
                     AYCLPFGFAASGVVMMGVLRRRQVNSVVAGWMFAVSSVFYVGAITVLTIIAVPIAGDD
                     DPVPGLQAISGGLLGALAVLGAAYAALRRPALRHGLSRVLPTVRRPPRRVESSKLRTG
                     LKDWARQLRTVRLTPAAGAAAFGLMLISWVTDVGVLAVAFLALGTTPPWTGLLLAYCA
                     GQIAASVPITPGGIGVVEGSITLALVAFGGAEIVTLAAVLLYRLIAYWGCIPAGGLAW
                     LALRVTSRAPARQVAKAHEEPVDTVVAEAESAS"
     gene            3210..3677
                     /locus_tag="VF788_02760"
     CDS             3210..3677
                     /locus_tag="VF788_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933114.1"
                     /translation="MTASRWRRAAVAGFVVVCTLTAACSGPRSGASATSNVSSCAAVL
                     PLARNVVHDQGILTVVRRISRDDADALSRKLGAAPPAPPSSAARSGPHRPVRPGWPKA
                     CLVVYRGNYPAGAISKASPPAVAGHYALIVLRVRHPAVDRILVTDQPPSDLHL"
     gene            complement(3699..3995)
                     /locus_tag="VF788_02765"
     CDS             complement(3699..3995)
                     /locus_tag="VF788_02765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HEX8933115.1"
                     /translation="MLTVTEAAARAINSLITKNEMPAGAGLRISPQSKTTRAEGLGLS
                     IARAPADDDTVLDAHGAKVFLAQTVVFDLHEQQLDVDEVGEQVRFFVERRPKDS"
     gene            complement(4062..4406)
                     /locus_tag="VF788_02770"
     CDS             complement(4062..4406)
                     /locus_tag="VF788_02770"
                     /inference="COORDINATES: protein motif:HMM:NF014687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HEX8933116.1"
                     /translation="MDRSGSGQTPSDHALLDLSTAAERTCLAWQRSGLGMVGVGALFI
                     RGHVLLSVLSGFVLVGTGVLATALVGPWRYQAILARVRAQRSPSSRCVMLIAAVVICA
                     SAGAGLGLIGLR"
     gene            complement(4409..4774)
                     /locus_tag="VF788_02775"
     CDS             complement(4409..4774)
                     /locus_tag="VF788_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HEX8933117.1"
                     /translation="MAAKPPLREVGSDPDYRFTLANERTFLAWLRTSLGLIAGGVALT
                     ALVPQFGPKPVRVGLAAFLLVMALVCAAGGYLRWERAERALRTNSPLHLGVLPRLVAV
                     GVVAVVLVAMIVIVLGAAG"
     gene            complement(4788..4979)
                     /locus_tag="VF788_02780"
     CDS             complement(4788..4979)
                     /locus_tag="VF788_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933118.1"
                     /translation="MRAPVSDRRPRAGMTLAPRHRQSRPLPMSAVAVRRGQFGEFELR
                     PVREHTVEALTTEETPQES"
     gene            5421..6050
                     /locus_tag="VF788_02785"
     CDS             5421..6050
                     /locus_tag="VF788_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative glycolipid-binding domain-containing
                     protein"
                     /protein_id="HEX8933119.1"
                     /translation="MSTPQTGQRLPGGVSRRAPHVARMLAWVGVDGLRLEAARVVLGE
                     YGLRATGSLVSCQQDGIEAYSASYSLSTDETGVVQRLTVRITRAQGEQHVTLTRSEEG
                     NWLVDHGQGAARTDFGGALDVDLEFSPLFNALPVRRLALHRIAAKHGLAMVFVSLPSL
                     EVSRVPQTYRTVSVGEPAVICLGSDSYDVEFTVDADGLVLDYPGLAHRA"
     gene            complement(6033..>6626)
                     /locus_tag="VF788_02790"
     CDS             complement(6033..>6626)
                     /locus_tag="VF788_02790"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX8933120.1"
                     /translation="WQAHDPEITAAVERAAGALSTAGAVLREIRMSGIDELAATYRVI
                     VGVEALSTHRHWLAQRPGDYQPATAARLRIAAEYTAADYVTAQRTRRRLVAEMTARML
                     TGGIDLLLTPATPLRSTPIGARQVSAPDGTHVEVAPALLSLTLPFNLLGWPAVSVPAP
                     EVTGLPVGVQLAAVRGGEQAVLAAGARIADGASGPVS"
BASE COUNT         1076 a         2216 c         2171 g         1163 t
ORIGIN      
        1 aaaaagcggc tagtgccaat gtcggtatcc ctatcccggc acgtctgagt aaagatgggc
       61 cacggacgct tcttggtgtc ccatctgctg gagccgtccc agtggtgatc atcgtgttct
      121 cctcggtcgc agcgcacgtc gagcacaact ggacatttgc cattattctt ccacctgtct
      181 tggctcggag caacccgcca tagcagacgg tggcgtcagt ccctattaag tgggccacgg
      241 tcgagtgatc catcgtcatc ccacagatgt agaaggcttc ccgcgatact tcatctgatg
      301 tactccgact acacgaactg aggtagctgg accctctccc tgccagtcgg gcgcggccaa
      361 gctcagttct ctcgccggcg atgcaaccgc gacgcgcctt cacctctacc acaccgcccg
      421 cccatcggcc gtccattcag taaacgaccc aaggtgatcc gcgattctgt tggtagcagc
      481 cttcgggttg acccgctccg tgacgtcagc ggagggcttg gaggtcagta cggcccgcag
      541 tcggttcagt gcccggtgct gcgccaccct gacggcgcct ggagtcgatc ccacagcctc
      601 ggcagtctcc tccacggaca ggcccaccac gacccgcagg tgaacgatct ctcgttgctt
      661 gccagacagc gactccagca acctgttcat ccgcccggcg atctcgccgt gcatgacctg
      721 ttcctccgga ccatcagcca ggtcagtggc atcgggcacc tcggagactg gttctgcgcg
      781 gttgcgcgcc gccgaccggt gagcgtcggc caccttgtga ccggcgatgc cgtatacgaa
      841 ggcgagaaag ggtcgccctt cgtcccggta cttggggagg gccgtcagga ccgccagaca
      901 tacttcctga gcgacatcat ccgccgaggc gaatgtcttc tcctgacccc caacgcggga
      961 gcggcaatac ctcaccacaa gtggacggat ccaacgcaag acgttatcaa tggcgttggg
     1021 atcacccccg acggccgcac tgaccagggt ggtgcggtcc tctcccctgt cctgtgaaac
     1081 cgcggcgaca ttcgcaattg attttgtctc gatcgccatc gtgagctgct tggtgagcgc
     1141 tcgaacatcg gcgacggcat ggtccccgac aggagtcaac gactcgggtg agtcaagtag
     1201 tgaaagcgta gccaccggat gcccctcttg ctgattgacc agccaccatc gtccaggttc
     1261 ttcgtgccgc accaatatgt cggacactca ggggccagac atccgttcca cagaccatct
     1321 tcggcctacc ccagctcatg cagtggagat acatcagctg aggtagtccg cagcgggtcg
     1381 ctacatccga ggggtgatca catccgtctc accagcgaaa atgccagggg cctccggggc
     1441 ggccctctgg gcgaagagag gcctcagcgg cgtcagcaga agctgatcca ggtcacgcat
     1501 gaggtgagga tgagccgggc attgcggtca agcacgagat cggtctgcgc gccaagtggt
     1561 catgtgactg gtcaagtgac ctcgacggcc atcccggtgt ccgggagccg gtcgcgggcg
     1621 acagctagcg gctcccgggt gaacaacggg ttcaccatca ggtcggcgat accgaccggt
     1681 gggggttgtc cggggcgaga ggcacagggt gatcaggcat agcgtgatca gaccccccgc
     1741 cgcatcatca atagtagtag cgtcgaccgc cgaccgggcg tcccaccgct ccaagcagtg
     1801 ccaggatcgc tccgaccaca atcaagatga ttccgatcgt ccacagaatc ccgataccga
     1861 gcagataccc aactactagt aagataatac cgagaacaat catgattcct cccagatccc
     1921 gcttgggcat ccgctggtcc gactgacccg gacctacgcc gacggagccg gccggtatcc
     1981 ttcgcagctt accctgcgaa cgacctcggc aaacatgcca aatctggcgc tgctgggatc
     2041 agcgtccagg ttaaggcaac gtaagaatcg tggacggatc tgcggtctca gcgtggtgta
     2101 tagaaaggta tggcggtggt aacgggcctg cgcggactga gcggtcagcg gcggtggcgc
     2161 cgggcagctg tggtcatcgt cgggctggcc gcggccgcgc tggccgtacg ggtgttgtac
     2221 gacagcagcg acgagctgct caccgccgcc gacactttga cctctgtcca gcccggctgg
     2281 gtcctggtgg ccatcctcgt cgagttgctg tcctatgcgg cgcgaggtgg cgcaaccacg
     2341 gtggtgctgc gccgcgcagg tggtggggtc ggcccgatgg tcctgacggc ggccacgttg
     2401 gccggtgacg cagcggcgta ctgcttgcca ttcggattcg cggcttccgg cgtggtcatg
     2461 atgggtgtgt tgcgccgtcg tcaggtcaac tcggtggttg ccggctggat gttcgcggtg
     2521 tcctcagtgt tctacgtcgg ggcgatcacg gtgctcacca tcatcgcggt cccgatcgcc
     2581 ggcgatgacg accccgttcc cggcctgcag gcgatcagtg gcgggctgct gggcgcattg
     2641 gctgttctcg gtgctgccta cgcggcgctg cggcggcccg ccctccgaca cgggctctcc
     2701 cgggtgctac ctaccgttcg ccgcccaccc aggcgcgtgg agagttcgaa gctgagaacg
     2761 ggcctgaagg actgggcgcg gcaactgcgc accgtccggt tgactcctgc cgccggcgcg
     2821 gcggcgttcg gtctgatgct gatctcctgg gtgactgacg tgggggtgct ggcggtcgcc
     2881 ttcctggcgt tgggcaccac cccaccgtgg accggattgc tgctcgcgta ctgcgccggc
     2941 cagatcgcgg cgagcgtgcc gatcactccc ggtgggatcg gagtcgtgga aggcagcatc
     3001 accctagcgc tggtcgcctt cggcggcgcc gaaatagtca cgctggccgc tgtgctgctc
     3061 taccggctca tcgcctactg gggctgcatt cccgccgggg ggttggcgtg gctggcgctg
     3121 cgagtgactt cgcgggcccc ggctcgtcag gtcgccaaag cccatgagga gccggtggat
     3181 accgtggtcg ccgaagcgga gtccgcgtca tgaccgcctc acggtggcgg cgcgccgcag
     3241 tggccgggtt cgtggtcgtg tgcaccctga cggcggcctg ctccgggccc cgtagcggcg
     3301 cctcggccac cagtaatgtc tccagttgcg ccgcggtgct accgctggcc cgcaacgtcg
     3361 tccacgacca gggcatcctc accgtggtcc ggcggatcag cagggatgac gccgacgccc
     3421 tcagccggaa gctgggtgcg gccccgcctg cgcctccgtc gagcgctgcg cggtccggcc
     3481 cacaccgccc ggtgcggccc ggatggccca aggcgtgcct cgtcgtctac cgcggcaact
     3541 acccggcggg cgccatctcc aaggccagcc caccggcggt ggccggtcac tacgcgctca
     3601 tcgtgctgcg cgtccggcac cccgcggtcg accggatcct ggtcaccgac cagccccctt
     3661 cagacctgca cctctgaccg gcaggtggcg actctctctt aggagtcctt gggcctgcgt
     3721 tcgacgaaga aacgcacctg ctcgccgacc tcgtcgacgt cgagctgttg ctcgtgcaga
     3781 tcgaacacga cggtttgcgc caagaacacc ttggcgccgt gggcgtccag cacggtgtca
     3841 tcatcggccg gggcccgtgc aatcgacaat cccaaacctt ctgcccgagt agttttgctc
     3901 tgtggcgaga ttcgcaggcc cgccccggcc ggcatctcat tcttggtgat gagcgagttg
     3961 atggcccggg ctgctgcctc ggtgactgtc agcatgccgt taccgtaggg ggcatcagcc
     4021 gcgaggcgta agcgggagtc gataatcgca tccgcggccg ttcagcgcag accgatgagc
     4081 cctaaacctg cacctgcgct ggcgcagatc accacggccg cgatcagcat cacgcaccgg
     4141 ctgctggggg atctctgtgc ccggactcgg gccagtatcg cctggtagcg ccacggcccg
     4201 accagcgctg tcgcgaggac gccggtcccg acgagcacga acccgctcag cacggaaagc
     4261 aatacatggc cacggatgaa cagcgccccg acaccgacca tccccaaacc ggaccgctgc
     4321 caggccaaac aggtgcgttc agcggctgtg ctcaggtcga gaagtgcatg gtcggaaggt
     4381 gtctgcccgg acccggacct atccatggtc atcctgctgc cccgagcacg atcacgatca
     4441 tggccaccag caccaccgcg accactccga cggccactag gcgcggcagg acgccgagat
     4501 gcagcgggct gttcgtgcgc agtgctcgct cggcccgctc ccaccggagg tagcctcctg
     4561 cggcacatac cagggccatg accagcagga acgcggcgag tcccacccgt accggcttag
     4621 gtccgaactg aggaaccaaa gccgtgagtg ccacgccgcc ggcgatgagt cccagcgacg
     4681 tccgtaacca cgccaggaaa gtgcgttcat tggcgagagt gaagcggtaa tccggatcgc
     4741 tgccgacttc ccgcagcggg ggtttcgccg ccaccaggtt gcggcgctca actttcctgg
     4801 ggggtctcct ctgtggtcag cgcttcgacg gtgtgttccc gcaccgggcg cagctcgaat
     4861 tccccgaact ggccgcgacg cacggccacg gcactcatcg gcaggggtcg gctctgccgg
     4921 tggcggggag caagggtcat tccggcccgc ggtcggcggt cggagacggg cgcgcgcatg
     4981 tggtccttct tcgtttggtt acacgggctg ccggcagccg aggtaggagc gcgccacgaa
     5041 cgtgcacagc ggagtaaccc gcatgctcgg gcgcccctcg gcgagatcga cgtggtacag
     5101 gttattccgg actagcagcc agcacgacac tgcccccagg ctctcgtccg cggtgaagag
     5161 tactccttgc ggccgacatt ggcatacctg ctatcggatg gctcccaacc aggtcacatt
     5221 gtgaagtcat cccgcgagac cggcaagtcg tccggtgcct ttccgtgcga tcatccggca
     5281 taggtaagct tgcagccgta gccggtcgcc tgccgggcag gaccccacca gtgcacgagg
     5341 gaggctccgg tggagctggg ccattgtttc gtttgggtct gctttcggga tgcggtgcgc
     5401 caagtcagtc aggtcggccg gtgagcaccc cccagactgg tcagcgactc cccggcgggg
     5461 tgtcccgccg cgcgccgcac gtcgccagaa tgctcgcttg ggtcggagtg gacggcctgc
     5521 ggttagaggc agcgcgggtc gttctcggtg agtacggcct gcgggcgacc ggatcgttgg
     5581 tgagttgcca gcaggacggt atcgaggcct actccgcgtc gtactcgttg tccaccgacg
     5641 agaccggagt ggtccagcgc ttaaccgtcc ggatcactcg cgcccagggt gagcaacacg
     5701 tcacccttac ccgatcggag gagggaaact ggctggtcga ccatggtcag ggcgccgcgc
     5761 gaaccgactt cggtggagct ctggacgtcg atctggaatt cagcccgttg ttcaacgctc
     5821 tgccggtccg ccgcctggcc ctgcaccgca ttgctgccaa gcatggcctc gcgatggtgt
     5881 tcgtctcgtt gccgagcctg gaagtgagcc gggtcccgca gacctaccgc accgtctcag
     5941 tgggtgagcc cgccgtgatc tgcctcggca gcgactccta cgacgtggag ttcaccgtcg
     6001 acgctgacgg tctggttctc gactaccccg gcctagctca ccgggcctga cgcgccgtca
     6061 gcgatccggg cgccggcggc gagcactgcc tgctccccgc cccgcacagc ggccagttgg
     6121 acgcctaccg gcaacccggt cacctccggc gctggcactg acaccgctgg ccagcccagc
     6181 aggttgaacg gcagcgtcag ggatagcagc gcgggcgcta cctccacgtg cgtgccgtct
     6241 ggggcgctca cctgccgagc gccgatcgga gtggaccgca gcggcgtggc cggggtcagg
     6301 aggagatcga tgccgccagt gagcatccga gcagtcatct cggcgactag ccggcgccgg
     6361 gtgcgctgcg cggtgacgta gtcggcggcg gtgtactcgg cggcgatacg cagccgtgcc
     6421 gcggtggccg gttggtagtc accggggcgt tgcgccagcc aatgtcggtg ggtgctgagg
     6481 gcctccacgc cgacgatcac ccggtaggtg gcggcgagct cgtcgatgcc ggacatgcgt
     6541 atctcgcgta gtacggcacc ggcggtgctc agcgcgccgg cggcgcgttc caccgcggcg
     6601 gtgatctcgg gatcgtgggc ctgcca
//
LOCUS       DASVXZ010000142         5228 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_194565, whole genome shotgun sequence.
ACCESSION   DASVXZ010000142 DASVXZ010000000
VERSION     DASVXZ010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5228
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194565"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VF788_02795"
     CDS             <1..186
                     /locus_tag="VF788_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020637377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933121.1"
                     /translation="GPTSLENCVALCGRHHRLLHHSPWQIQMASGIPEFYPPPWLGGP
                     PRTNPLHTSPDLIRIRQ"
     gene            365..745
                     /locus_tag="VF788_02800"
     CDS             365..745
                     /locus_tag="VF788_02800"
                     /inference="COORDINATES: protein motif:HMM:NF024857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8933122.1"
                     /translation="MVHAEEAKPPHRRASVPTHAPHESDPVVVLRIGPDITWDSHTRE
                     RIKTVLDHGDRGMVICDVAAIRYPTLGTLDVLARLQLAVRRRGWDLTLHGAHSELRAL
                     LALAGLIEVLHVIPNSPSGAVDDD"
     gene            935..2236
                     /locus_tag="VF788_02805"
     CDS             935..2236
                     /locus_tag="VF788_02805"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX8933123.1"
                     /translation="MSEVDPPGYPGTGSDSPSAGRPTVEYPLSIARTDRSSGWEPLSR
                     RHSPRLLIILLVAFVSVIAVGVIRVAWPAAATAPPWPSSTAAFPWASPIAALPVTSGT
                     PSGSLDLASLAAGVDPAVVDINTQLGDQNDSGAGTGIVLSPSGEVLTNNHVINGATSI
                     TATDVGNGQVYPATVVGYDSSHDLAVLQLQGASGLQTASIGDSSAVAVGDEIAAIGNA
                     GGRGGTPSVTAGTVSALDQMVTVSDEITGSSQELAGLIQVAADVQPGDSGGPLVNTAG
                     EVIGVVTAGSGGTRWQSSGGDGLAIPINDAIAISKQIRTGTASATVHIGDTGVLGIQV
                     QDPTAQATSRHRGNFGYRHGSDASGVLVAGVLPGSPAAQSGLSAGDVIVSVDAAAVDS
                     AAALTTVLAGHHPGDMMRLAWVDVSGNPHTATLLLATGPPN"
     gene            2421..2978
                     /locus_tag="VF788_02810"
     CDS             2421..2978
                     /locus_tag="VF788_02810"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020658638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8933124.1"
                     /translation="MRFLDRTLFGDTRSWICRQATGEVLEVAIGTGLNLEHYPPDVAL
                     TGIELSPAMLAIARRRADDLDRPVELRVGDAEALDIPSATFDTVVCTFSLCAIPDHRK
                     ALVEMARVLRPGGLLLLADHVASSVPVLRAGQRLLEVVTVPLGGEHFLRRPIEQVRAA
                     GFRIEHHNRFTAGIVERLAAHKQAG"
     gene            complement(2985..3653)
                     /locus_tag="VF788_02815"
     CDS             complement(2985..3653)
                     /locus_tag="VF788_02815"
                     /inference="COORDINATES: protein motif:HMM:NF016959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8933125.1"
                     /translation="MPVCPEEITTASLRRRWRGYDPTQVEALLTRIATDYTGALDRIA
                     TLGEDRAQYRADYQQLQQRFDDIGSSARAAAEQARRDADTDAKTIRARAEQSASLIIS
                     QAEEAAAACNRQAHSLRSDAEQEVTAAQRRLAEADRRAQQLEDAARDRWDTMRAETEK
                     RFEHLQMAERRFADRIRHVEEILAAVRTEVHLGPPPPEGRENPNGSQRVSTHAEPQPR
                     PGPP"
     gene            complement(3656..3793)
                     /locus_tag="VF788_02820"
     CDS             complement(3656..3793)
                     /locus_tag="VF788_02820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933126.1"
                     /translation="MLLLDTVSIRDASGATRTPSPMDSFIPACDTERIDALAAPTNRG
                     G"
     gene            4135..>5228
                     /locus_tag="VF788_02825"
     CDS             4135..>5228
                     /locus_tag="VF788_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEX8933127.1"
                     /translation="MGAVSHALALAGSMTWEILWALILGLALSAVVQAVVPKSTIVRL
                     LGDDRPRTLAVAAALGASSSSCSYAAVALARSLFRKGANFTAGMAFEIGSTNLVIELG
                     VLLALLMGWQFTAAEFVGGPIMIVLVAVLFRLFVRQQLVEKARQQADKGLAGSMEGHA
                     AMDMSIQTEGSFWQRLFSADGVTAVAHVFVMEWAAILRDVVLGLLIAGAIGAWVPEGF
                     WRSFFLTDHPVLSTLWGPIVGPIVAILSFVCSIGNVPLAAVLWNGGISFGGVIAFIYA
                     DLLILPILNIYRRYYGTPMALVLLGTFYAAMVGAGYLVELLFGVTGLIPTQRSARVME
                     EGIVWNYTTWLNIVFLILATVLVVRFVRTGG"
BASE COUNT          795 a         1723 c         1734 g          976 t
ORIGIN      
        1 ggcccgacca gcctggagaa ctgtgtcgcg ctctgcggcc gacaccaccg gctcctccac
       61 cactccccct ggcaaatcca gatggccagc ggaatcccag aattttatcc accaccctgg
      121 ctcggcggcc ccccgcgtac caaccccctc cacaccagcc ccgacctcat ccgcatccgc
      181 cagtaatgac aaactcccgc gctcacgtga cctggccgcg ctcagacgct ccttactcgg
      241 tggatcagca cagccgctcc tgcgccatcc tgcacatcat cgctgagccg agtcgctcta
      301 gcgatgaaat ctgcttgcga aggcggtctc agtaccgaga cgcggcgacg agagagcaaa
      361 tctggtggtg catgcagagg aggcgaagcc gccgcacagg cgcgcttcgg tccccaccca
      421 tgccccccac gagtccgacc ctgtagtggt gctccgaatc gggcccgaca tcacctggga
      481 ctcgcacact cgcgagcgca ttaagactgt gctggaccat ggtgatcggg gcatggtgat
      541 ctgcgatgtc gccgctatcc ggtatccgac tctcggcacg ctcgacgttc tggcccggct
      601 gcagctcgcg gtgcgtcggc gcggctggga tctcacactg catggcgctc actcggagct
      661 tcgcgcgtta ctcgccctcg ccggtctcat cgaggtgcta cacgtcatcc cgaattcgcc
      721 aagtggcgcg gtggacgatg actgactggc gtgcggtatt cgggagttcc ttgtggtgaa
      781 ctggtgactc aggtcgacac accgggcggt gcttcggtcg ccgtcgggac acctggcatc
      841 aagttcacag acaggcatca ggtagctccc aggttggcgc ggtctgctca gtggagagaa
      901 ccgttccgat gtccaccgag aggagggcgt atcggtgagc gaggttgacc ctccgggtta
      961 cccgggaacc ggatccgatt cacccagcgc cgggcggccg accgtggagt acccactatc
     1021 tattgcgcgc accgatcgca gcagcgggtg ggaaccgctc tcgagacgac actcaccgcg
     1081 cctgctgatc atcttgctgg tcgccttcgt atccgtgatc gcggtcggag tgatccgagt
     1141 cgcgtggccg gccgctgcca ccgcgccacc atggccgtcc tccacagccg cattcccgtg
     1201 ggcatcaccg atcgccgccc tgccggtgac ctccggcaca ccgagcgggt cgctggacct
     1261 cgcgagtttg gcagcgggtg tcgaccccgc tgtggtggac atcaataccc agttgggtga
     1321 ccaaaacgac agtggcgccg gtaccggaat tgtgctgagc ccctccggtg aggtgctcac
     1381 caacaaccac gtgatcaacg gtgccaccag cattaccgcc accgacgtgg gcaacggcca
     1441 ggtctacccg gccaccgtcg taggctatga cagtagtcat gacctcgcgg tgctccaact
     1501 gcagggcgcc tcgggtttgc agaccgcctc gatcggggac tccagcgcgg tcgccgtcgg
     1561 agacgagatt gcggcgatcg gcaacgcggg tggccgcggt ggcaccccca gcgttacggc
     1621 aggcacggtc tcagctcttg atcagatggt taccgtcagc gacgagatca ccggcagctc
     1681 gcaggagctc gcagggttga tccaggtcgc agccgacgtg cagcccggcg actctggggg
     1741 cccgctggtg aacaccgccg gagaggtcat cggcgtcgtc accgcaggct caggcgggac
     1801 gcggtggcag tcctccggtg gcgacggatt ggcgatcccg atcaacgacg cgatcgcgat
     1861 cagcaagcag atccgcaccg gcaccgcttc cgcgaccgtc cacatcggag acaccggcgt
     1921 cctcggcatc caggttcagg acccgaccgc tcaagcaacg tcgcgccacc ggggcaactt
     1981 cgggtaccga cacggctcgg acgcctctgg cgtcctcgtc gctggcgtcc tgcccggctc
     2041 accggctgca caatccgggt tgagtgcggg ggatgtcatc gtgtcggtgg acgctgcggc
     2101 ggtcgattcc gccgccgcac tcacgacggt gctcgccggc caccaccctg gagacatgat
     2161 gcggctggcc tgggtggatg tgtccggcaa cccgcatacg gccactctgc tgctggcgac
     2221 cggtcccccg aactgagggc cctgatcacc tgattggcga taaacctggc cctacgcgct
     2281 cgaggctgaa actggcgccc gccagcggca ccccgcgtac ggttggtgta cctggaggtg
     2341 gtcgcacggt gagcgacagc gcacggcgtg cgcggtggcg ccggtactgg gataagcatt
     2401 ccaagaccta cgaccgcgag atgcgctttt tggaccggac gctgttcggt gacacccgaa
     2461 gctggatctg ccggcaggcg accggcgagg tgctcgaggt agccatcggt accggcctga
     2521 atctggagca ctacccaccc gatgtcgcgt tgaccggtat cgagctcagc ccagccatgc
     2581 tcgcgatcgc gcggcgacgc gcggatgatc tcgatcgtcc cgtcgagctg cgggtgggcg
     2641 atgccgaagc actcgacatc cccagcgcca ccttcgacac agtggtctgc accttctcac
     2701 tgtgcgccat ccccgaccac cgaaaggccc tggttgagat ggcccgggtg ctgcgaccgg
     2761 ggggactcct gctgctcgcc gaccacgtag ccagttcggt cccagtgctg cgggccggcc
     2821 aacgcctcct cgaggtggtg acggtcccgc tgggcggcga gcacttcctg cgccgcccca
     2881 tcgagcaggt ccgcgctgcc gggttccgga tcgaacacca caatcggttt acggcgggga
     2941 tcgtggaacg actcgcagct cacaaacagg ccggctgaac gccgctatgg cggtccggga
     3001 cgcggctgcg gctcagcgtg cgtgcttacc cgttggctgc cattgggatt ctccctgccc
     3061 tcgggtggcg gtggaccgag gtggacctcg gtgcgcaccg cagccaggat ctcctcgacg
     3121 tggcggatcc ggtcggcgaa gcggcgttcg gccatttgca ggtgctcgaa gcgcttctcg
     3181 gtttcggcac gcatcgtgtc ccagcgatcc cgagcggcgt cttcgagttg ttgggcgcgc
     3241 cggtcggcct cggccagccg tcgctgtgcg gcggtgactt cttgttcggc atctgagcgc
     3301 agggaatggg cctgccggtt acacgcggct gccgcttctt cggcctggct gatgatcagc
     3361 gaggctgact gctcggctcg cgcccggatc gtcttcgcgt cggtgtcggc gtcccggcgg
     3421 gcctgctcgg cggctgctcg cgcggagctg ccaatatcgt cgaatcgttg ctggagttgt
     3481 tggtagtcgg cccggtattg ggcgcggtcc tcgccgaggg tggcgatccg gtcgagcgcg
     3541 ccggtgtagt cggttgcgat ccgggtcagc aatgcctcga cctgggtggg gtcataaccg
     3601 cgccaccgac gccgtagtga cgcggtggtg atctcttcgg gacacacggg catcgtcagc
     3661 ctccacggtt ggtcggcgcg gcgagcgcat cgatgcgctc ggtgtcacac gcgggaatga
     3721 acgaatccat cgggctcggc gtccgggtgg cgccactggc gtcgcggatc gagaccgtat
     3781 caagcagcag cacccgcgca tcgccggcgc cggtgcgatt ggcctcgttg agcagagagt
     3841 atccgagctg ctcgatgacg tcctcgcaaa tcgcatccag cccgggcgcg tcttcgactt
     3901 cgagaccgac ctcgacggca tcgcgcaggc atacgccgcc atggacgagc gccgcgcgat
     3961 caagtcgctc gtgcgggtgg gaaagatctg atcagcacca tcctcgcgtc cgcgcgatcc
     4021 accatggcac agacgttgca cgtccctgac gaggaataca acgcccgctg agcacaggag
     4081 tcgcgacgct actgctggat aacccctcgg tgtgtgcagg aagtggttgc cgttatgggt
     4141 gcggtcagtc atgcgttggc cttggcaggg tcgatgactt gggagatctt gtgggcgttg
     4201 atcctcgggt tggcgttgtc tgcggtggtg caggcggtgg tgcccaagtc gacgattgtg
     4261 cgtttgctcg gtgatgaccg tccccggacc ctggcggtgg ccgctgcgct gggggcgtcg
     4321 tcgtcgtcgt gttcctacgc ggcggtggcg ttggcgcggt cgttgttccg taagggcgcg
     4381 aacttcaccg ctgggatggc cttcgagatc ggctccacca atctggtgat cgagctcggc
     4441 gtgctcctgg ccctgctgat gggctggcaa tttactgcgg ccgagttcgt gggcggcccg
     4501 atcatgatcg tgttagtcgc tgtgttgttc cggctcttcg tccgccagca gctggtcgag
     4561 aaggcgcgcc agcaggccga caagggcctg gccggctcta tggagggcca cgcggcgatg
     4621 gacatgtcca tccagaccga gggttcgttt tggcagcggt tgttctcggc tgatggtgtc
     4681 accgcggtgg cacacgtgtt cgtcatggaa tgggccgcga tcctgcgtga cgtggtgctc
     4741 ggcctcctca tcgccggtgc gatcggcgcc tgggtgcccg agggtttctg gcggagcttc
     4801 ttcctcaccg atcaccccgt gctgtccacg ctgtggggac cgatcgtggg tccgatcgtg
     4861 gcgatcctca gcttcgtctg ctcgatcggc aatgtgccgc tcgcggccgt gctgtggaac
     4921 ggcggcatca gcttcggcgg cgtgatcgcc ttcatttatg ccgacctgct aatcctgccg
     4981 atcctcaaca tctaccggcg ctactacgga accccgatgg cgctggtgct gctgggcacc
     5041 ttctacgccg ccatggtcgg cgccggctac ctcgtggagc tgctcttcgg agtcacgggg
     5101 ctgattccca ctcagcgctc ggcgagggtg atggaagagg gcattgtgtg gaactacacc
     5161 acctggctca acatcgtttt cctcatcctt gccaccgtgc tcgtcgttcg cttcgtgcgc
     5221 accggggg
//
LOCUS       DASVXZ010000143         3352 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1539420, whole genome shotgun sequence.
ACCESSION   DASVXZ010000143 DASVXZ010000000
VERSION     DASVXZ010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1539420"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..438)
                     /locus_tag="VF788_02830"
     CDS             complement(151..438)
                     /locus_tag="VF788_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933128.1"
                     /translation="MHALFVEVDVEDGVSIDEARQQLQENAPPMARKAGAHAAYWLAP
                     QGGRGISVAIFDSKDEAEKLASQLHIGEPPPNAPPGVTFRTVEVREVLASL"
     gene            complement(481..900)
                     /locus_tag="VF788_02835"
     CDS             complement(481..900)
                     /locus_tag="VF788_02835"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8933129.1"
                     /translation="MQIHRLGGDISVLNDQLPVPGIGFLPVNAFVLHAAEPVVVDTSL
                     SLPDRGFMDTLGSVVDPADVRWIWLTHPDRDHTGALFDLLDAAPHARLVTTFLSADIM
                     STERPVSLDRLYLLNPGQSLEVGDRTLTAFRPPLYTH"
     gene            1814..2422
                     /locus_tag="VF788_02840"
     CDS             1814..2422
                     /locus_tag="VF788_02840"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX8933130.1"
                     /translation="MAVRHLLLDLAGVLCRFDSAARLERLAAVSGLQNSEVDEQLYGC
                     GIVDRCDRGELDAASIRGVLREQLGLDCDDLALARLWASAFTPDEEVLTVVDDVAPGV
                     TRSLLTNNDALLRDALPLVLPTVHARIAIPLFSATIRVTKPSPASFAAALAVLGAAPA
                     DVLFVDDSESNIDGARRMGIATVQFTSAASLRAEFARAGLLA"
     gene            complement(2643..>3352)
                     /locus_tag="VF788_02845"
     CDS             complement(2643..>3352)
                     /locus_tag="VF788_02845"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEX8933131.1"
                     /translation="LIGVRRLRSGWKVGDGREESLAAYVVAHARRGDVADVIRVIDDF
                     CYHHNFMMNVGDEKGEILDRAIQRVRPRRLLELGTYCGYSALRMIRAMPSNAQLYSIE
                     LRPANAQIARRIWDYAGVGDRVTVVVGHLGDGGSTLDQLRAEHDFANGGLDFVFVDHD
                     KSAYLPDLQRILNQNWLHPGSVVVADNVKFPGAPQYRAYLRQQEGKSWHTTEHKTHVE
                     YQSLITDLVLESEYLGS"
BASE COUNT          587 a          995 c         1099 g          671 t
ORIGIN      
        1 gtggatcgtc agctggctcc gtaaacaaca cctccgcgtg aactggggaa ccctggtcca
       61 ccgctcccca ccggagtgga agatcagcga cggaccagtg gcgatgtccc accggtaacg
      121 gtgccggtca cccgctgttc accgatgcag ttacaagctg gcgagaactt cccggacctc
      181 aacggtgcgg aaagtgacac caggcggtgc gttaggaggg ggttcgccga tgtgtaactg
      241 gctggccaac ttctccgcct cgtctttaga gtcaaagatc gctaccgaga tgccgcggcc
      301 gccctgcgga gcgagccagt atgcggcgtg ggcaccggcc ttgcgtgcca tcgggggtgc
      361 gttttcttgc aattgttgtc gggcttcatc tatcgagacg ccgtcctcga cgtcgacttc
      421 gacgaacaat gcgtgcatgg tgcctccaat tgaaatcgtg aactggtgat cgacatggta
      481 ttagtgtgta tataacggcg gtctaaaggc ggtgagggtc cggtcgccta cttccagtga
      541 ttggccggga ttgagcaggt agagccggtc tagcgacacc ggccgctccg ttgacatgat
      601 gtcggcgcta agaaaggtgg tgaccagccg ggcatgaggt gccgcgtcga gcaggtcgaa
      661 cagcgctccg gtgtggtctc gatcagggtg cgtcagccag atccatcgca catcagccgg
      721 atcgacgaca gaacccagcg tgtccataaa gccccggtcc ggcaggctta ggctggtgtc
      781 gacgacgacg ggctcggcgg cgtgcaggac gaaagcgttc accggcagga acccgatgcc
      841 aggcaccggg agttggtcgt ttaagacgct gatatcgcca ccgaggcggt ggatctgcat
      901 cggtcctcct ggggccgcac catcacgcga gtcgtggttg gtgcttcgtc agcggctcgg
      961 gcggctgggc gtggaaatgg actatgcggg tctttgcgtc gagacagaag cgctgtatta
     1021 gcgggcctac gagggatggc tgcaacgtca accagagctt cctgctgggg gcgggcgtcc
     1081 atagcaagaa cgccgagtac tgcaaagagc agctctccgc gtcgtgtgac ctccttgagt
     1141 gcgtgatcgt atcgacacga caagtcgtga tgggatctag ttgggaggaa cggaagggtt
     1201 agcgccggat gggtagcact cgcgggtacc atgtgagttg ttggtcgcaa agagtatcgg
     1261 tagcgctccc atcggcgtaa ccagtacgcg tctataacgc tcgaatagtg tagtacgttt
     1321 gcgatccgta agtagtcatc tacgtagcgt cccgcagtac ctgggattcg gttacgtagg
     1381 gacatgagtc ttcgcagatt gcaatcatga tttctcccca cgcccgaaca agccagtgca
     1441 tgatcaccag ttggtaccgt ctgcaagcga ttactctgcg taactacatg gcggtggtgc
     1501 ccatctactt ggtgaatcat gggaaggggt gcaacatcgc cgtaggtccg agcgataggg
     1561 acgggtagag ccccgtgatg ctgttggacc cccgacctgg cagcgtcact gggcttttct
     1621 catgtaactt ctagcggtcc tgcactaccc gtcgccgggt tgcggcgtgc cggctacccg
     1681 agcagtagcc aacgcaccct tgtcgatgag cgggcgtctg cggtgcgggt cggcaagccg
     1741 cgattccttg gtgatggtaa ctgtgccggg agccgaaact gatgacgaag gctcacgggc
     1801 tacggtttcc cgcgtggcgg tgcggcatct tttgcttgat ctggcgggcg tgctgtgccg
     1861 gttcgactca gcagcgcggc ttgagcgtct cgccgccgtc tcgggcctgc agaattctga
     1921 ggtcgacgaa cagctctatg gctgcggcat cgttgaccgg tgtgaccgcg gcgagctgga
     1981 cgccgccagc atccgtggtg tgctgcgtga gcaattggga ttggactgcg acgacctggc
     2041 gctggcccgg ctgtgggcat cggccttcac cccagacgag gaggtgctca cggtcgtcga
     2101 tgacgtggcg ccgggggtga ctcgcagcct gttgacgaac aatgacgcgc tgcttcgcga
     2161 tgcgctgccg ctggtgctgc cgacggtgca tgcccggatc gcgatacccc tgttcagcgc
     2221 gaccatccga gtcaccaagc cgtctccggc ctcctttgcc gccgcgctgg cggtgctggg
     2281 tgcagctccg gcggacgtgc tgttcgtcga cgattcggaa tccaacatcg atggcgcccg
     2341 gcggatgggc attgctaccg tccagttcac gtcggctgcg tcgctgcgcg cggagtttgc
     2401 tcgcgccggc ctgctcgctt gacggcgctc ggagcggcac agttgcgctg atccgaacgg
     2461 tagggcaggg aacgattggt cacgtgacct gcggcaatcg ggcacggttt gacgtcgccg
     2521 tgcacgggga cctcgccgac tgccttgagg gtggccggcc gcttcctttg ctggcccgcc
     2581 gttgccgctt gtcacgatcg accgctaccg cccggccagt gtcgactgcc gtccaggcga
     2641 cgtcagctgc ctagatattc cgattcgagc acgaggtcag tgatcagcga ctggtattcc
     2701 acgtgcgtct tatgttccgt cgtgtgccag ctcttgcctt cctgctgcct caggtacgcc
     2761 cggtactgcg gcgcgcctgg aaacttcacg ttatcggcca ccacgacgga tccgggatgc
     2821 agccagttct ggttcaggat gcgctgaagg tcgggcaggt aggcagattt gtcgtggtcg
     2881 acgaacacga agtccaggcc gccgttggca aagtcgtgct ctgcacgcag ctggtccagc
     2941 gtcgaaccac catcgcccag atgaccgacg accaccgtga cgcggtcacc gacacccgcg
     3001 taatcccaga ttcggcgggc gatctgggcg ttcgccgggc ggagctcgat cgagtagagc
     3061 tgggcgttgc tcggcatggc gcggatcatt cgcaaagcgc tgtaaccgca gtaggtaccc
     3121 agctcaagga gccgccgggg tcgcacgcgc tggatcgccc tgtcgagaat ctcgcccttc
     3181 tcgtccccca cattcatcat gaagttgtgg tggtagcaga agtcatcgat cacccggatg
     3241 acatcagcga cgtcacctcg ccgggcatgc gccacaacgt atgcggcgag tgactcctcg
     3301 cgtccgtcac cgaccttcca gccgctgcgc agacgccgca cgccgatcag ca
//
LOCUS       DASVXZ010000144         8169 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_374133, whole genome shotgun sequence.
ACCESSION   DASVXZ010000144 DASVXZ010000000
VERSION     DASVXZ010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8169
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374133"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..173)
                     /locus_tag="VF788_02850"
     CDS             complement(<1..173)
                     /locus_tag="VF788_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX8933132.1"
                     /translation="MDQAGSPFTERTPRVVAARGLLRRRNRESAGRFLVEGAQAVREA
                     INYGSVLELFVTER"
     gene            complement(204..608)
                     /gene="rplT"
                     /locus_tag="VF788_02855"
     CDS             complement(204..608)
                     /gene="rplT"
                     /locus_tag="VF788_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEX8933133.1"
                     /translation="MARVKRAVNAQKKRRSTLEAASGYRGQRSRLYRKAKEQILHSLQ
                     YAYRDRRARKGDFRQLWITRINAAARQNGMTYNRLVQGLRIAEVEVDRKNLAELAVSD
                     PAAFTALVEIARANLPTSRGASAPAARDGDAA"
     gene            complement(676..870)
                     /gene="rpmI"
                     /locus_tag="VF788_02860"
     CDS             complement(676..870)
                     /gene="rpmI"
                     /locus_tag="VF788_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEX8933134.1"
                     /translation="MPKNKTHSGTAKRVKVSATGKLLRQRAGKRHLLEKKSSRITRRL
                     SGVVPVASPDASRIRKLLGL"
     gene            complement(951..1529)
                     /gene="infC"
                     /locus_tag="VF788_02865"
     CDS             complement(951..1529)
                     /gene="infC"
                     /locus_tag="VF788_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019815406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEX8933135.1"
                     /translation="MTVETRINDRIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLD
                     LVEVAAQARPPVCKLMDFGKFKYETAQKARESRRNQQMTVIKEQKLRPKIDAHDYETK
                     KRHVVRFLDAGHKVKVTIMFRGREQSRPELGFRLLQRLSEDVAELGFVETSAKQDGRN
                     MTMVLAPHRNKPRGVKAERAAAEPAHSADPAD"
     gene            complement(1892..4798)
                     /gene="uvrA"
                     /locus_tag="VF788_02870"
     CDS             complement(1892..4798)
                     /gene="uvrA"
                     /locus_tag="VF788_02870"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEX8933136.1"
                     /translation="MADRLVVRGAREHNLRSVDLDLPRDSLIVFTGLSGSGKSSLAFD
                     TIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSRNPRSTVGTI
                     TEVHDYLRLLYARAGEPHCPICGEPISRQTPQQIVDQVLALEPGTRFQVLAPVVRTRK
                     GEFVDLFAELQSQGYARVLVDGTVHALIDPPKLKKQDKHDISVVVDRLSVKDSAKQRL
                     TDSVETALRLADGLVVLDFVDRDEHDPHRQRRFSERMACPNGHPIGVDDLEPRSFSFN
                     SPYGACPECTGIGTRKEVDPELIVPDVELSLAEGAIAPWASGQTYEYFQRLLEALAET
                     VGFRMDTPWRRLSASAQKAVLHGTDVQVHVRYRNRYGRERSYYAAFEGVIPFLERRMN
                     QTESEHMRDKYDGYMREVPCPACRGTRLKPEILAVTLSHTTEGKKSIADISALSVRDA
                     AAFLEDLQLDTRQAMIAGAVLKEIQARLCFLLDVGLDYLSLDRASATLSGGEAQRIRL
                     ATQIGSGLVGVLYVLDEPSIGLHQRDNHRLLATLTRLRDLGNTLIVVEHDEETIRTSD
                     WVVDIGPGAGEHGGQVVYSGPFPGLEQHDTSLTGAYLSGRRSIPVPALRRPVDRSRRL
                     TVVGAREHNLRGIDVSFPLGCLVSVTGVSGSGKSTLVNDILATVLANRLNGARQVPGR
                     HTRVTGLDLVDKLVRVDQSPIGRTPRSNPATYTGVFDRIRKLFAATTEAKVRGYQPGR
                     FSFNVKGGRCEACAGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTIAEV
                     LDMPIEEAAVFFEPISAIHRHLKTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQK
                     RSTGRTVYVLDEPTTGLHFEDIRKLLGVINGLADKGNTVIVIEHNLDVIKSSDWVIDM
                     GPEGGAAGGIVIAEGSPEQVAAIEASYTGHFLRTVVDAQHSTSPRRRRAAVAAG"
     gene            5047..5724
                     /locus_tag="VF788_02875"
     CDS             5047..5724
                     /locus_tag="VF788_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005159192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8933137.1"
                     /translation="MDIIADYDGAVAPGGSAQRRTLGALTITKISVGPMDNNAYLLVC
                     RSTGEALLIDAANDAERLMDLLGHGPDRPDLRTIVTTHRHGDHWQALGALAGATGART
                     VAHPVDAPALPVPPDHLVAHGDTVTVGQVVLDVIHLRGHTPGSIALLHLDANGTPHLF
                     TGDSLFPGGPGRTTSPEDFTSLMNDLESRVFDQLPDSTWFYPGHGKDSTLGTERPHLA
                     EWRDRGW"
     gene            complement(5749..6189)
                     /locus_tag="VF788_02880"
     CDS             complement(5749..6189)
                     /locus_tag="VF788_02880"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HEX8933138.1"
                     /translation="MGEEISTLVDGVSAAWNNHDALGFAAQFSEDGVLRVIATGDVVA
                     GREQLRAVSEAYLRAFPDMQLERRSTYNCGEAACIIESTLRATHEGEFMGIPPTHRSV
                     ELLTCSIFTLGADKFLGEERVYFDAVTLLRQLGVLPESPDAQPA"
     gene            complement(6226..7347)
                     /locus_tag="VF788_02885"
     CDS             complement(6226..7347)
                     /locus_tag="VF788_02885"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEX8933139.1"
                     /translation="MTMVDQVATTAEQEAPTGRWEKLRRSSGDRGGSSGGIMLTGAGL
                     VATLVVVSLLWWVSAQRPQAEVPNLVGMPRTQAEALLSGMGLKMRAAHDEVSDQPVGT
                     VLRTDPPAGQALEQGGGVSLTLASAPLTVGPSSTVVTPPVQEAPVVQAAPEAQQPATA
                     AAPRADVVPPAVVVPPPVVVPPPVVVPPPVVVQPPPPPPAPALRPVPDVAGFDLVRAR
                     RALADSGLRVGSVIEMESRERPWTVLRTNPRAGVAVSPDSTVDLLVAKRTQVVVPSVV
                     GLDRVKAERMLANDGLRVGSVTEMESNQPSSAVLRTNPRAGTEVALGSTVDLVVAKPP
                     TTNTPPTTTPPPSKPPAPGKPKESADVKGRETSTNGGNK"
     gene            complement(7610..>8169)
                     /locus_tag="VF788_02890"
     CDS             complement(7610..>8169)
                     /locus_tag="VF788_02890"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX8933140.1"
                     /translation="GNYLYGAFGCDFPTKDGKRVMVVGLTPRQWRSLVVAVGIGGACV
                     QVEKLLGVDLSKEGDRFAARHVISALIEPWVSGRTMSEVREVFDAHDVCWGPYQTFAE
                     LVTTDPRCSSANPMFAEIDQPGIGTYLMPSSPLEFSAVQRVPPGPAPRLGQHTDEVLA
                     GVLGLSGTEIGRLHAEGVVSGDPED"
BASE COUNT         1376 a         2728 c         2625 g         1440 t
ORIGIN      
        1 cgctcggtga cgaacagctc cagcaccgac ccgtaattga tggcctcgcg cacagcctga
       61 gcgccctcga cgaggaaccg gccagcactc tcccggttcc gccgcctgag caggccacgg
      121 gccgccacga ccctcggggt ccgttcggtg aacggagagc ccgcctggtc caagcgaggc
      181 aaaataatgg tcggccgcgg cgcttaggcg gcgtcaccgt cccgggccgc gggtgcgctc
      241 gccccacgac tggtcggcag gttcgccctg gcaatctcca ctagcgcggt gaatgcggca
      301 ggatcggaga cggcaagctc ggcgaggttc ttacggtcta cctcgacttc ggcaatgcgc
      361 aggccctgga cgaggcggtt gtaggtcatc ccgttctgtc gagcggcagc gttgatccgg
      421 gtgatccaga gctgccggaa atcacccttg cgtgcccgcc ggtcgcggta ggcgtactgc
      481 agggagtgga gaatctgttc cttggccttg cggtagagcc gggaacgctg gccacggtag
      541 ccgctggcgg cttccagggt gctgcgacgc ttcttctggg cgttgaccgc tcgcttgacg
      601 cgtgccactg gtttgtcctg tcgatctcgg gggcgggtga tcgcccgggg tcggggtctc
      661 cgggtgtggg gccggtcaga gaccgagcag cttgcggatc cgcgaggcgt ccggcgaggc
      721 caccgggacg accccgctca gcctgcgggt gatcctggag gacttcttct ccagcaggtg
      781 gcgcttacct gcccgctgcc gcagcaactt accggtagcg gagactttca cgcgcttcgc
      841 ggtgccactg tgggtcttgt tcttcggcat gtccgtcctc gtcctgccac ctggatatgg
      901 cggctgtgaa tacggtgacc ctgcgggcca tcggatgctg tgcgggaagg tcagtcagcc
      961 gggtcagccg aatgcgccgg ctcggccgcc gcccgctcgg ctttgacccc ccgtggctta
     1021 ttgcgatgcg gagccagcac catcgtcatg ttgcgaccgt cctgcttggc agaagtctcc
     1081 acaaagccaa gctcagcgac gtcctcggac agccgctgca gtagccggaa tcccaattcc
     1141 ggccgggact gctcgcggcc ccggaacatg atggtgacct tcaccttgtg ccccgcgtcg
     1201 aggaaccgga caacgtgacg ctttttcgtc tcgtagtcgt gggcgtcgat cttggggcgg
     1261 agcttctgct ccttgatgac cgtcatctgc tggttacggc gggattcacg ggccttctgg
     1321 gcggtctcgt acttgaactt gccgaagtcc atgagcttgc agaccggtgg gcgggcctgc
     1381 gccgcaacct cgacgaggtc gagatccgct tcttgagcta gtcgcagcgc gtcctcgatg
     1441 cggacgatgc caacctgctc gccattcgga ccaaccagcc tgacctcggg aacgcggatg
     1501 cgatcgttaa tgcgtgtttc gacggtgatg tggcctcctc agtcgtccta cccacggtgc
     1561 aaccgggcgt gtggggctcc gcctctcgac ggttctacct cccgacaccc gtgcccaagg
     1621 ggcaccccgg atgcaacgcg gccccgcacc cagtcctggc gtgcggggcc cgcagatccg
     1681 accgatcgac gccgcgtgtg gttgtcagca cacgacgtaa cgccggaatc cgccggtgga
     1741 ttccgggacc ggacccggcc gcttcgcagc ggttcgggtg ggaggcgggc tccacttgcc
     1801 gcttccgccg aagcgaaagc tggtcgcctc gacatgctac caggtcacca ccctgagtac
     1861 ccaggcgttc agctggacat gcggaagtga cttatcccgc cgctacggcg gcccggcgac
     1921 ggcgagggga cgttgagtgc tgcgcatcga cgacggtgcg caggaagtga cccgtgtaac
     1981 tggcttcgat ggcggcgacc tgctcgggag aaccctcagc gatcacgatg ccaccggccg
     2041 caccaccttc cgggcccatg tcgatcaccc agtccgatga tttgatcaca tcgagattgt
     2101 gctcgatgac gatgacggta ttgcccttgt cggccagtcc attgatcacg ccgagcagtt
     2161 tgcggatgtc ctcgaaatgc agtcctgtgg tgggctcgtc gagaacgtag acggtgcgac
     2221 cggttgaccg cttctgcagt tcgctggcca acttgacgcg ctgcgcctcc ccaccggaca
     2281 gggtcggggc gggttgcccg agccgcacat agcccaaccc gacgtccacc aatgtcttga
     2341 ggtgccggtg gatcgccgag atcggctcga agaacaccgc tgcctcctcg atcggcatgt
     2401 cgagcacctc agcgatggtc ttgcccttgt agtgcacctc gagcgtctcc cggttgtacc
     2461 gcgcaccctg gcacacctca catggcacgt acacgtccgg cagaaagttc atctcaatct
     2521 tgatggtgcc atcgcccgcg caggcctcgc agcggccgcc cttgacgttg aaggagaacc
     2581 gtccaggctg gtaaccgcgg accttcgcct cggtggtggc ggcgaaaagc ttgcggatcc
     2641 gatcgaacac accggtgtac gtggccgggt tggaccgcgg ggttcgaccg atcggtgact
     2701 gatcgactct gaccagcttg tcgacgaggt ccaggccggt gacccgggtg tgccgaccgg
     2761 gtacttgacg ggcgccattg agccggtttg ccagcacggt agcgaggatg tcattgacca
     2821 gcgtcgactt cccggacccg gacacgcccg tgacggacac cagacagccg agtgggaacg
     2881 acacatcgat tccgcgaagg ttgtgctccc gcgctccgac cacggtcagc cgccgcgacc
     2941 ggtccaccgg acgacgcagc gccgggaccg gaatactccg ccggccggat agatatgcac
     3001 cggtgagcga ggtgtcgtgc tgttccagtc ctgggaaggg accgctgtac acgacctgac
     3061 caccgtgctc tcccgcaccg gggccgatgt ccaccaccca gtcagaggta cggatggtct
     3121 cctcgtcgtg ctctaccaca atcagcgtat tgcccaggtc acgcagccgc gtaagggtag
     3181 ccagcagccg atggttgtcc cgctggtgaa ggccgattga gggctcgtcc agcacgtaca
     3241 ggaccccgac caggccagat ccaatctggg tggccagccg gatccgctgg gcctcgccac
     3301 cggagagcgt cgccgaggcc cggtccaggg acaggtagtc caaccccacg tcaagaagga
     3361 aacacagccg tgcctggatc tctttgagca ccgcgccggc gatcatcgct tgtctggtgt
     3421 ctaactgaag gtcctcgagg aacgccgcgg catcgcggac cgacagcgcg gagatgtccg
     3481 cgatcgattt cttgccttca gtggtgtggg agagcgtgac ggcaaggatc tcgggcttga
     3541 gccgagtacc gcggcaggcc gggcagggca cctcgcgcat gtaaccgtcg tacttgtcgc
     3601 gcatgtgttc ggactcggtc tggttcatcc gccgctcgag gaacgggatg accccctcga
     3661 aggcggcgta ataggaacgc tcgcggccat agcggttgcg gtaccggacg tggacctgca
     3721 catctgtgcc gtgcagcacg gccttctggg cgctggccga taaccgtcgc cacggcgtgt
     3781 ccatccggaa accgacggtc tcggccagtg cttcgagcag ccgctgaaag tactcgtagg
     3841 tctggccgct ggcccaaggc gcgattgctc cctcggccag cgagagttcc acgtccggca
     3901 cgatcagctc aggatctact tccttgcggg tcccgattcc cgtgcattca gggcaggcgc
     3961 cgtagggcga gttgaaggag aacgagcgcg gctccaggtc gtcgacgccg atggggtggc
     4021 cattggggca ggccatccgc tcggagaacc gccgctgccg gtgcgggtcg tgctcgtcgc
     4081 gatcaacgaa gtcgagcacg accaggccgt cggccagccg tagcgcggtt tccacggagt
     4141 cggtgagccg ttgcttggcg ctgtccttca ccgacagccg gtcaactacc acggatatgt
     4201 cgtgcttgtc ctgctttttt agtttgggtg gatcgatgag ggcatgcacc gtgccgtcca
     4261 cgagtacccg cgcgtagccc tgggactgca gctcggcgaa cagatcgacg aactcgcctt
     4321 tgcgggtccg caccaccggc gccaagacct ggaagcgggt accgggttcc agcgccagta
     4381 cctggtcgac gatctgctga ggcgtctgcc gggagatcgg ctcaccacag atcgggcagt
     4441 gcggctcgcc agcgcgggcg tagagcaggc gcaggtagtc gtgcacttcg gtgatggtgc
     4501 ccacggtgga tcgggggttg cgactggtgg acttctggtc gatcgatacc gcgggcgaga
     4561 ggccctcgat gaaatcgacg tcgggcttgt ccatctggcc gaggaattgg cgggcatagg
     4621 ccgacagcga ctcgacgtac cggcgctggc cctccgcgaa gatcgtgtcg aaggcaaggc
     4681 tggacttgcc cgagccggac agcccggtaa acacgatgag gctgtcgcgg ggcaggtcga
     4741 gatcgacgct gcgcaggttg tgctcccgcg cgccacgcac gacaagtcgg tcagccacgg
     4801 tgttcctttc gaaccctgtg tctccttcga accctgtgtc tccttcgaac cctgtgctcc
     4861 tgaaccactc ggttctcttc ggctcccgcg tcaccgcgcc cagacccgag cccatccatc
     4921 tcatgctatg cgggtggccc gacagcccct cactggccac gtggaaccta ttggggctcc
     4981 cagaccatcc cgaaccgcct gatggaacct attggaggtg ccgtacgcgc gatacggtca
     5041 ccgactgtgg acatcattgc ggactatgac ggcgcggttg caccgggtgg atcggcgcag
     5101 cgacggacac tgggcgcgct gaccatcacc aagatctccg tcgggccgat ggacaacaac
     5161 gcctacctgc tcgtctgccg gagcaccggc gaggcattgc tgatcgacgc ggccaacgac
     5221 gcggagcggc tgatggacct gttgggccac gggccggacc gccccgatct gcgaacgatc
     5281 gtcaccaccc accgccacgg ggatcactgg caagccctcg gtgcgctcgc cggcgctacc
     5341 ggagcgcgga ccgtcgcgca tcccgtcgac gcccccgcat tgccagtgcc accagaccac
     5401 ctggtggccc acggtgacac ggtgacggtt ggccaggtgg tcctggacgt gattcatcta
     5461 cgcggacata ctcctggctc gatcgccctg ctgcacctgg acgccaacgg cacaccacac
     5521 ctgttcaccg gtgactctct ttttcccggc ggaccgggac ggacgacgtc gccggaggat
     5581 ttcaccagcc tcatgaacga cctggaatcc cgggtattcg accaactccc cgactccaca
     5641 tggttctatc ccggccacgg caaggattcc actctcggca ccgagcgccc ccacctcgcc
     5701 gagtggcgcg atcgcggatg gtgaccagtc cgagtccgcg ctgcccgctc aggcgggttg
     5761 agcatccggg gattccggaa gcacacccag ctgacgcagc aacgtcacgg cgtcgaagta
     5821 cacgcgctcc tcgccgagaa atttgtcggc tccgagcgtg aaaattgagc aggtgaggag
     5881 ctcgaccgag cgatgggttg gcgggatgcc catgaactcc ccctcgtggg tcgctctgag
     5941 cgtcgattcg atgatgcacg ccgcctcgcc gcagttgtat gtgctcctgc gttccaactg
     6001 catgtctgga aaagcacgga ggtaggcctc cgacaccgcc cgaagctgtt cgcgcccggc
     6061 cacgacgtca cccgtcgcga tgacccgcag caccccatct tcagaaaact gcgcggcgaa
     6121 cccgagggca tcatggttgt tccaggccgc gctaacgccg tccaccagcg tgctgatttc
     6181 ctcgcccatc gtggcacctt accgattggc tcatggagga agccgctatt tattgccgcc
     6241 gttagtactg gtctcgcggc ccttgacatc cgcgctctct ttcggcttgc ccggtgccgg
     6301 tggcttgctc ggcggtggtg tcgtcgtcgg cggtgtgttg gtggtcggtg gcttggcgac
     6361 aaccagatcg accgtactgc cgagggcgac ctcagtgccc gctcgcggat tggttcgcag
     6421 cactgccgag gacggctggt tggattccat ctcggtaacc gaaccaaccc tcagcccatc
     6481 gttggccagc atccgctctg ccttgacccg gtcaagcccc accacactgg gcacgaccac
     6541 ctgagtgcgc ttggccacca aaaggtcaac ggtgctatcc ggcgagaccg cgacacccgc
     6601 tcgcgggttg gtgcgcaaca ccgtccaggg ccgctctctg gactccatct cgatcactga
     6661 cccgaccctc agcccgctgt ccgccagcgc tcgccgcgcc ctgacgaggt cgaaaccggc
     6721 tacgtcgggc accggacgca atgccggggc cggcggggga ggcggaggct gcaccacgac
     6781 cgggggcggc accacgaccg gaggtggcac caccacgggg ggcggcacga caaccgctgg
     6841 gggtaccaca tccgcgcgcg gggcggcggc agttgcaggc tgctgtgctt cgggagccgc
     6901 ttggaccacc ggggcctcct gcaccggggg tgtcaccacg gtgctggacg gcccgacggt
     6961 aagtggcgcg ctcgcaagcg tgaggctcac ccccccgcct tgctcaagcg cctgccccgc
     7021 aggcgggtcg gtgcgcagca ccgttcccac cggctggtcg gaaacctcgt catgggccgc
     7081 gcgcatcttc agccccatgc cactgagtag agcctcggcc tgagtccgtg gcatgccgac
     7141 caggttcgga acctcggctt gcggccgctg cgcagaaacc caccacagga gggacaccac
     7201 aacgagcgtt gccaccaagc cggctccggt cagcatgatc ccaccggagc tgccgcctct
     7261 gtcgccactc gatcggcgca gtttctccca ccgtccggtg ggcgcctctt gttctgctgt
     7321 ggtggctacc tggtcaacca ttgtcatggt tgctccccca ttaacattcc gaccttctga
     7381 cgaagaaccg cgccctgaac agcgagatct gactgtcccg cgagcaaggg cggatattcc
     7441 tctgatcgga accggagacc gcgcgggtac atcgaaggac caccgtcacc cgaaagggtg
     7501 atatcaagct tatcgagtga agatcaggta cagcaggacg gtaagcgcag ccgatatcag
     7561 caacgaggcc aggcagccca atcgacttga aaagaagaaa aacatctggt cagtcctccg
     7621 gatccccgct gaccacgcct tcggcgtgta agcgtccgat ttcggtaccc gacagaccga
     7681 ggaccccggc gaggacctcg tcggtgtgct gcccgagccg gggcgccggt ccgggcggta
     7741 ctcgctgcac cgcggagaat tccagcggcg agctgggcat caggtacgtg ccgatgcccg
     7801 gctggtcgat ttcggcgaac atcgggttcg cgctcgagca gcgcggatca gtcgtgacca
     7861 actcggcgaa ggtctggtaa ggcccccagc acacatcgtg cgcgtcgaac acttcgcgca
     7921 cctcggacat cgtgcgaccg ctgacccacg gctcgatcag cgcgctgatc acgtggcgag
     7981 cggcgaaccg gtcaccttcc ttggacaggt cgactccgag gagcttttcg acctggacgc
     8041 aggcaccacc gatcccgacc gctaccacga ggctccgcca ctgccgcggg gtcagcccga
     8101 ccaccatcac ccgcttgccg tctttggtgg ggaaatcgca gccgaaggcg ccgtacaggt
     8161 agttgccgt
//
LOCUS       DASVXZ010000145         2492 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_545486, whole genome shotgun sequence.
ACCESSION   DASVXZ010000145 DASVXZ010000000
VERSION     DASVXZ010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545486"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VF788_02895"
     CDS             complement(<1..644)
                     /locus_tag="VF788_02895"
                     /inference="COORDINATES: protein motif:HMM:NF019619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX8933141.1"
                     /translation="MREVDELHRGVGALATALELELRDRVGVNAYANCGVAESYAVHH
                     DDHDVFVLQVAGTKRWWLYDLAAPLPLPDDVDHPTVTRATPPAEAIAELLLKEGQVLY
                     LPRGWRHAAQAVEGPSLHLTVGITRATGVDLLNWLVGRLRNHDIVRADAPRQDGKAAR
                     QEYLAEIRELIATKLAEPDVLTQMLADRDARHRMNLGFALPLAGSGVPAPLSGEP"
     gene            complement(1205..1573)
                     /locus_tag="VF788_02900"
     CDS             complement(1205..1573)
                     /locus_tag="VF788_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933142.1"
                     /translation="MRVALASNMHAPGAILADLIEHGGWPSMCPCPHWPDAVAAMCEV
                     RRLAAGNPATPVAAVERLIAEPEPVFALALTSRADLPDQTYVVLFYCATMTTSGEPEP
                     VNADENGRIGQRDRASVHSV"
     gene            complement(1770..>2492)
                     /locus_tag="VF788_02905"
     CDS             complement(1770..>2492)
                     /locus_tag="VF788_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-utilizing enzyme"
                     /protein_id="HEX8933143.1"
                     /translation="AQAKEQDVLERLRALPDGEQKADETKRMIDRARTFNGYREYPKY
                     GMVSRYFMYKQALLEEAERLVQAGVLREKEDIFYLRFPELHDVARTNHVDDQLICRRK
                     DTFRSYQALTPPRVLTSDGEVITGAYRRDDVPTGALVGLPVSAGVIEGRARVILDMAQ
                     ADLEAGDILVTAYTDPSWTPLFVAIAGLVTEVGGLMTHGAVIAREYGLPAVVGVVDVT
                     QLISDRQRIRVHGTDGYVEILP"
BASE COUNT          475 a          777 c          764 g          476 t
ORIGIN      
        1 ggttcacctg acagcggtgc cggtactccg gagcctgcta gcggaagagc gaacccgaga
       61 ttcatccggt ggcgagcgtc gcggtctgcg agcatctgtg tcagtacgtc aggctcggcc
      121 aacttggtgg caatcaattc acggatctcg gcgaggtact cctgtcgagc ggccttgccg
      181 tcttggcgtg gcgcgtcggc tcgcactatg tcgtggttcc gcaggcgtcc gacgagccaa
      241 ttcagtaaat cgacgccggt ggcccgggtg attcctacgg tcaggtgcag ggaaggtccc
      301 tcgacggctt gcgcggcatg ccgccagccg cgaggtagat acaggacctg accttccttc
      361 aggagcagct cggcgatcgc ttcggcagga ggagtcgcgc gcgttacagt cgggtgatcg
      421 acgtcatcgg gcagtggcag cggtgcggcc aggtcataca gccaccaccg cttggttccg
      481 gcgacctgca gcacaaaaac gtcgtggtca tcatggtgga ccgcatagct ctcagcaaca
      541 ccgcagttgg cataggcgtt gacaccaacc cggtcgcgta gttccagctc caatgcagtg
      601 gcgagcgcac caactccccg atgtaactcg tcaacctcgc gcaaccgtaa agtaccacca
      661 ctggacagat atgcattcat tcgttgcgga cataaccgct gccagtcgtt tcccttagtc
      721 gtctccttcg tcgtatattc atactgcgga atgatactgc tgccccgcag caaccgcagt
      781 tgggattcac ccagccggtg ggtagcaaga atctcgttta gatctgccca cccgaacaac
      841 ctgacgaacc gatcaggatc tcccgggaag acatgaaatg tacgcccata tacttgcgtc
      901 agaaactcca tcgcgcccaa cggggctgtc aattcgtcaa gacacgtcga catcgtgtgt
      961 cctctcatca cgggaaaact attgactcat ggtaaatagc agtagtcgtt ctaacgaccg
     1021 agaccgacga caggttacag tatgtgtttc gactagtgcg atactactca cttcttttgg
     1081 aggcgcggga tacgcatcag caggatcgaa cgcttccaac ctgaagcgtc gcaccacaat
     1141 gtgaagcgaa acgcttcgcc cagaaagaga agtgagcggt cggttgcctt ggctgataac
     1201 agactcagac agagtggact gatgcgcggt cccgctgccc aatacgtccg ttttcgtccg
     1261 cattcactgg ctccggttcc ccggacgtgg tcatcgtggc gcagtagaaa aggaccacgt
     1321 aggtctggtc cggtaggtct gctcggctcg taagtgccag cgcgaacacc ggttctggtt
     1381 cggcgatcag acgctcaacc gcagctacgg gggtcgcggg attgcctgcg gccagccggc
     1441 gcacctcgca catggcggcc acggcgtcgg gccagtgcgg acacgggcac attgagggcc
     1501 agccaccatg ctcgatcagg tcggccagga tggcgccagg agcatgcatg ttcgatgcca
     1561 gtgcgacccg cacgcaggct tcagcacgtc gcgacagccg caatgccggt ttttgtggaa
     1621 gttcccagag gtgggcggtg gacgcagcaa ccgagcagtt tcatcgtcag cgagctgtgc
     1681 gacgtccagt cgcgccgacg catggtcacc cagcgccaga cgcactgcgg tatccggcca
     1741 ggaggcgagc ccgtcgccga gtggctcagt caaggcagga tctcgacgta cccgtcggtt
     1801 ccgtgtacgc ggatccgctg cctatcggag atcagctggg tgacgtctac cacaccgacg
     1861 acggccggca agccgtactc ccgtgcgatc actgcgccgt gagtcatcaa tcctccgacc
     1921 tccgtcacca aacctgcgat ggcgacgaag aggggcgtcc agctgggatc ggtgtaggcc
     1981 gtgacgagga tgtcgcccgc ttcgagatcg gcctgcgcca tatccaggat gacgcgggcc
     2041 cgcccttcga tgaccccggc ggagaccggt aggccgacca gggcaccggt cggcacgtcg
     2101 tcgcgtcggt acgccccggt gatgacctcg ccgtccgatg tgagcacccg gggcggcgtg
     2161 agcgcttgat acgacctgaa cgtgtccttg cgccggcaaa tgagctggtc atccacgtgg
     2221 ttcgtgcgcg cgacgtcgtg gagctctggg aacctcaggt agaagatgtc ttccttctcg
     2281 cgaagcacgc cggcctgcac gaggcgctcg gcctcttcca gcagggcctg cttgtacatg
     2341 aagtagcggc tgaccatgcc gtacttcgga tactcccggt acccgttgaa ggtacgggcc
     2401 cggtcgatca tccgcttggt ctcgtcggcc ttctgctcgc cgtccggcag ggcccgcaag
     2461 cgttccagga cgtcctgttc cttcgcctgc gc
//
LOCUS       DASVXZ010000146         2565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_374303, whole genome shotgun sequence.
ACCESSION   DASVXZ010000146 DASVXZ010000000
VERSION     DASVXZ010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374303"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..835)
                     /locus_tag="VF788_02910"
     CDS             complement(86..835)
                     /locus_tag="VF788_02910"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEX8933144.1"
                     /translation="MEAIIAALDEQQAELDGLLAALDDSDWLTPTRCPGWSVADVVLH
                     LAQTSELAAATGNDSFGKRFSEFMPADARTVDEGAERAVVAERGAGTTQLLQRWQAAA
                     TAQRQLFAASDPSRRLPWVIGELRARTLLTTRLSELWIHTADIADAVGITLVPTDRLW
                     HIARLAWRTLPYAFARAGEVLHGPIAVELTGPSGARWSFGANDHPLTIVRGSGWEFCL
                     VAARRLDPAKTQLTATGSDAGQVLKLVRTYA"
     gene            complement(912..2078)
                     /locus_tag="VF788_02915"
     CDS             complement(912..2078)
                     /locus_tag="VF788_02915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HEX8933145.1"
                     /translation="MSSSAVVVWDEALLGYHLGGWHPLNPIRLDLTIRLARSLGVLDG
                     VQLLAPVQATDDELRTVHSDDYVAAVKQAPRGRAGHGLGTPDNPVFQRMHEASALIAG
                     GSLLAADKILTGHAVRAVNIAGGLHHAMRDYASGFCIYNDCALAIRRLLDGGVSRVAY
                     VDIDVHHGDGVEAAFAANPRVLTISLHQDPATLFPGTGNSADIGAPGAEGSAVNVPLP
                     PGTGDEGWLRAFHAVVPRLLRAFAPEVLVTQHGADTHVEDPLANLALSVDGQRAVHRA
                     LAELADSTAGGRWLALGGGGYSLFRVVPRSWTHLLATVLSRELDPHVAVPREWTAYTA
                     TVASGTPLPTSMTDGAEPSWTPWDGTGDTALDRAIERTRHAVYPLHDLDPQDPC"
     gene            complement(2126..>2565)
                     /locus_tag="VF788_02920"
     CDS             complement(2126..>2565)
                     /locus_tag="VF788_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX8933146.1"
                     /translation="PLAGTMTVRPGGMPVLDAAHAAALARNGVLLDARARARYRGETE
                     PVDPRAGHIPGATNAPFSELTDAQGRWLPPRRLRELAGRWGTAGKEIGAYCGSGINAC
                     ALVLGLELAGVTTPIRAAALYAGSWSQWCADPDRPVATGPTPG"
BASE COUNT          467 a          868 c          849 g          381 t
ORIGIN      
        1 aggctgtcgc gcgccgcgga aggtcgggct cgtcgggggt ccggccttcc cacgctccac
       61 atcgttcagg cgcagctgct gcggatcagg cgtatgtccg cacaagtttc aggacctggc
      121 ccgcgtctga gcccgtagcg gtcagctgag tcttggctgg atcgagccgg cgggccgcga
      181 cgagacagaa ctcccaacct gagccgcgaa caatcgtgag cggatgatcg ttggcaccaa
      241 acgaccacct cgctccgctg ggcccggtca gctccaccgc gatcggcccg tggagcacct
      301 cgccggcgcg agcgaaggcg taaggcagcg tgcgccacgc cagacgggcg atatgccaca
      361 gccgatcggt cgggacgagc gtgatgccca cagcgtcggc gatgtctgcg gtgtgaatcc
      421 acagttccga cagccgggtt gtgagcaggg ttcgggcccg cagctcaccg attacccacg
      481 gtagacgacg gctcggatcg gaggcggcaa agagctgccg ctgtgccgta gcagcggctt
      541 gccaacgttg aagaagttgc gttgtgcctg cgcctcgctc ggccacaacc gcccgctcgg
      601 cgccttcatc cacagtgcgg gcatcagcag gcataaattc actgaaacgc ttaccgaacg
      661 aatcgttgcc agtggcggcg gccagctcgc tggtctgcgc gaggtgcaac acaacatcgg
      721 ccaccgacca gccaggacac cgggtcgggg tcaaccagtc gctgtcgtcg agggcggcga
      781 gcagaccatc gagttcagcc tgttgctcat ccagggcagc aatgatggct tccatagcgc
      841 gggacgctag tcccagacga cgctgggcac atatccgtaa cgactctgcg gcacggctgc
      901 cgagcagttg cctagcaggg atcctggggg tccagatcat gcagcgggta aaccgcgtgc
      961 cgggtccgtt cgatcgctcg gtcgagcgcg gtgtcgccag taccgtccca aggcgtccac
     1021 gagggttcgg cgccgtcggt catcgaggtc ggcagcggcg taccggacgc cacggtggcg
     1081 gtatacgcag tccactcccg cggaaccgcc acgtgagggt ctagctcgcg gctgagcacg
     1141 gtagccagca gatgcgtcca tgaacgcggg accacgcgga atagggagta gccaccaccg
     1201 ccaagagcta gccagcggcc accggccgtg ctgtcggcga gctcggctaa cgcgcggtgc
     1261 accgcccgct gaccatccac cgacaacgcg aggttcgcga gcggatcctc cacatgggtg
     1321 tccgccccgt gttgggtcac caagacttcg ggggcgaacg cgcgcagcaa cctaggcact
     1381 accgcgtgaa atgcccgcaa ccatccctca tcgcctgtgc cggggggaag cggcacattg
     1441 actgcggaac cttcggcgcc gggggctccg atgtcagcag agttgccggt gccaggaaac
     1501 agcgtcgccg ggtcctgatg cagcgagatg gtgagcaccc gagggttggc agcgaaggct
     1561 gcttccacgc cgtcaccatg gtgcacatca atgtcgacgt aggccactcg ggacactcca
     1621 ccgtcgagta gccggcggat cgccaacgcg cagtcgttgt agatacagaa acccgatgcg
     1681 tagtcacgca tggcatggtg cagcccgcca gcgatattca ccgcccggac cgcgtgaccg
     1741 gtgagaatct tgtcggcagc aagcagcgag ccaccggcga tcagcgctga agcctcatgc
     1801 atgcgctgga acacaggatt gtccggggta cccagtccgt gccctgcccg cccgcgcggt
     1861 gcctgcttga ccgcggcgac atagtcgtcg gagtgcaccg tacgtagctc gtcgtcagtg
     1921 gcctgcaccg gtgccagcag ctgcacgcca tccagaacac ccaacgatcg agccaatcgg
     1981 atagtgaggt cgagccggat cgggttcagc ggatgccacc caccaaggtg gtaacccagc
     2041 agggcctcgt cccagacgac caccgcggaa gagctcatgc tgccgcacgc tactggctac
     2101 cagcccgacc ccgacaggag cgcacctacc caggggtcgg gccggtggcc actggacggt
     2161 ccgggtcagc gcaccattgc gaccacgatc cggcgtacag cgccgccgcg cgaatgggag
     2221 tcgtgacgcc agcgagttcg agtcctagca ccaaggcaca tgcgttgatc ccggaaccac
     2281 agtaagcgcc gatctcctta ccggcggttc cccaccggcc cgcaagctcg cgcaaccgac
     2341 gcggcggtag ccaacgcccc tgcgcgtcgg tcagctcgct gaatggagcg ttggtcgccc
     2401 cgggtatatg accggcgcgc gggtccaccg gctcggtctc ccctcggtaa cgggctcgcg
     2461 cccgagcgtc gagcagcaca ccgttgcggg ccagcgccgc ggcgtgcgcc gcgtcgagca
     2521 ccggcatccc gccggggcgt acggtcatgg tgccagcgag cggct
//
LOCUS       DASVXZ010000147         3290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_993843, whole genome shotgun sequence.
ACCESSION   DASVXZ010000147 DASVXZ010000000
VERSION     DASVXZ010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_993843"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..336
                     /locus_tag="VF788_02925"
     CDS             70..336
                     /locus_tag="VF788_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005459076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMED_5909 family protein"
                     /protein_id="HEX8933147.1"
                     /translation="MTTEETSTSAVPRTLAEAQEAVAAIRPPRRASLSEWLAHHQRSA
                     ALYAEIAEIDRGHHHEALFMAEQQRQRAKEIKTEISAQQPTGET"
     gene            353..622
                     /locus_tag="VF788_02930"
     CDS             353..622
                     /locus_tag="VF788_02930"
                     /inference="COORDINATES: protein motif:HMM:NF041510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMED_5909 family protein"
                     /protein_id="HEX8933148.1"
                     /translation="MNKTTTKPRPPQTLMQAHEELVCTRPCPKASLPVWLSYYQHSVA
                     VYEQIAKSDPGHDGEAMYWAARERLHARGIETRIRALGTGGITTA"
     gene            887..2209
                     /locus_tag="VF788_02935"
     CDS             887..2209
                     /locus_tag="VF788_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEX8933149.1"
                     /translation="MGEGVVVRPDQVSLGVLVNAVPRDAVDDAVAVCGVGEKRSGGKL
                     PAHVITYLTLGLALFPEDDYTEVATRVTGSLDRWGCWDAAWTVPTASAITQARKRLGR
                     DVFPELFERTCGPVAGEAGLAAQTVALGTARGSFLRRWRLLAIDGFELDVPDSVENAA
                     EFGYAGSGDNRSAFPKARVVALAECGTHAFVAAEVDAYRVGEKTLAQRLYPRLRTDEL
                     LTADRGFYSWQAWDTASATGAALLWRAPTQLELPVVAVLDDGTYLTALITPAIRGRRR
                     ERLLAAARAGADLTDINTVPDAFDDRGLPVIHLARVIEYDVPDRVGNGTGELIVLLCT
                     ITITDPGTDHGARADELAAAYHQRWEEETANDQLKTHLRGPAKVLRSKLPDLIHQEIW
                     AYLIVHHAISELTARASAAADLDPDSISFAKALRLIRRTATGTADISP"
     gene            3089..3250
                     /locus_tag="VF788_02940"
     CDS             3089..3250
                     /locus_tag="VF788_02940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933150.1"
                     /translation="MTVLPLTNTTLEALAGYLLSQVVPQLTKTGLVTAELAISELPGT
                     SATARADFD"
BASE COUNT          638 a         1106 c         1015 g          531 t
ORIGIN      
        1 cgagtcggcc gcaggtgcct tcgagtccca agcacgcgac tacgaaaccg gcaacaccag
       61 cgaggaagca tgaccacaga ggaaaccagc acatctgcgg tgccccgcac gttggcggag
      121 gctcaggaag cggtggccgc tattcgcccg cctcggaggg catcactcag cgagtggttg
      181 gcgcatcacc agcgttcggc ggcgttgtac gccgagatcg ctgagattga tcggggtcac
      241 catcacgagg cgctattcat ggccgagcag caacgccaac gcgccaagga gatcaaaacc
      301 gagatctccg cccaacaacc gaccggtgag acataaaagg taagggaggg ccgtgaacaa
      361 gaccaccaca aaaccgcgac cgccgcagac gttgatgcag gctcatgagg agcttgtgtg
      421 tactcggccc tgcccgaagg cgtcattacc ggtgtggctt tcctattacc agcactcggt
      481 ggcggtgtac gagcagatcg ccaagagcga tcccggacac gacggcgagg ccatgtactg
      541 ggcggcgcgg gaacgactcc acgcacgggg aatcgaaacc cggatcagag cactgggaac
      601 aggcggaata acgacggcct aggaaacaac tgcgagaagg tggtagggag gtgatgagtg
      661 ggggcaggtg gtgggttgcg ctgctagcgc ggcgacgggc gcaccgatgg cggattcgac
      721 tgagcgggcg aacctgccgc agatgcggac gcttctggtt cctgccggtc ggtcctgagc
      781 ccaatgccgt gtagcttaag ttgatcaagt ctttgaactg gtagttcttg gtcggttcgg
      841 cgtggcgtga tcgtctctgg tggtgcggct ggcacggtcg ccgatcatgg gcgaaggtgt
      901 ggtggtgcgg ccggatcagg tgtcgctggg agttctggtc aatgccgtgc cccgcgatgc
      961 ggtcgatgat gcggtcgcag tgtgtggggt cggtgagaag cgctcgggcg gcaagctgcc
     1021 cgcgcatgtg atcacgtacc tgacgttggg gttggctttg ttccccgagg atgactacac
     1081 cgaggtcgcg acccgggtga ccgggtcgtt ggaccggtgg gggtgctggg acgcggcgtg
     1141 gacggtgccg actgcctcgg cgatcaccca ggcccgcaag cgcctgggcc gggacgtgtt
     1201 cccggagctg ttcgaacgca cctgcggccc ggtcgcgggc gaggccggtc tggccgcgca
     1261 gaccgtggcg ttaggcaccg cgcgcgggtc gttcctgcgc cggtggcggc tgctggccat
     1321 cgacgggttc gaactcgatg tgcccgacag cgtggagaac gccgccgagt tcggttacgc
     1381 cggttccggg gacaaccgct cagcgttccc caaggccaga gtggtggcct tggccgagtg
     1441 cggcacccac gccttcgtcg ccgccgaggt cgacgcctac cgggtcgggg agaaaaccct
     1501 cgcgcaacgg ctgtatccac ggctgcgcac cgacgagttg ctcaccgccg accgcggctt
     1561 ctactcctgg caggcctggg atacggcctc cgcgaccggt gcagcgctgc tgtggcgagc
     1621 cccgacccag ctggagctac ccgtcgtggc ggtactcgac gacgggacct acctcaccgc
     1681 actgatcacc ccggccatcc gcgggcgccg ccgcgagcgt ctgctcgccg ccgcccgcgc
     1741 cggcgccgac ctcaccgaca tcaacaccgt ccccgacgcc ttcgacgacc gcggcctacc
     1801 ggtcatccac ctggccagag tcatcgagta cgacgtgccc gatcgggtcg gcaacggcac
     1861 cggggagctg attgtgctgc tgtgcaccat caccatcacc gaccccggca ccgaccacgg
     1921 tgcacgagcc gatgagttgg ccgccgccta ccaccagcga tgggaagaag agactgccaa
     1981 cgaccagctc aaaacccacc tgcgcggccc cgcgaaggtg ctgcgctcga agctgcccga
     2041 cctgatacac caggagatct gggcctacct gatcgtccac cacgcgatca gcgagctgac
     2101 cgcccgagcc tccgccgccg ctgatctcga cccggactcg atctccttcg ccaaggccct
     2161 gcgcctgatc cgccgtaccg ccaccgggac agcggacatt tccccctgag gactggaccg
     2221 gccaactccc ggtccacctg tcccagatcg ccgtcctgct catcccacca cgacgcgagc
     2281 gcacctgccc ccgcgcgatc aaacgagccc gacacaacag ctaccgagtc aagaagcacg
     2341 gcgaacccgc cagcacccgc cacaccggcc cgccaacgat caacatctgc gcactgaaat
     2401 cccgaccagc agcatgatca acttaagcta cacggcattg aggtagagcc cgaccacatc
     2461 aatcaccttc tcctcgaagt caggatcggt ggacagcttg aacgtccctg acgatgcggt
     2521 gcaagatcat gctctcgcca caacgcggcg acgaagttgt gggaaacaga gattcccagt
     2581 tctcgtttga gatagcgcgc cacctcgcgg ctcgaccagt gcgaaagccc ggtcttttcc
     2641 ggcggcgact gccgagtcag cgccaggatc cttgcccgat tctcggccga tacctccgga
     2701 ggtcgcccgg tcgacacgcg atcgctcaac ccgtcgacac cacactgctc ataccgggcg
     2761 atccacttat acaccgtcgg tctggtggta cccgccattc gtgctatctc cgggaccgaa
     2821 tttccctccg cgcgccacaa tacgatctgc gcccgcgccg agaccgatcc gtcataaccg
     2881 tcacggcgaa gcagtgaccc aaggccgact cgatcctcat ccgtcagatc cacgacaatg
     2941 attatgccac cgactgagcc gatataaagc tcattcagtt acgacacaac tagtacccgg
     3001 acatgcaccg gagctgaaga tcacgcagga aaatgactcc ctgtcgatta tctgcggccg
     3061 caagcagtac ctactgccca ctgaggacgt gaccgtgctg ccgctgacca acaccaccct
     3121 cgaagcgctg gccggctatc tgctcagtca agtggtgcct cagctgacga agaccggact
     3181 ggtgaccgca gaactggcaa tttctgagct ccccggtacc tcggccaccg cacgtgccga
     3241 ctttgactag ggcgatgatc acctattact ggactggacg ctctacacca
//
LOCUS       DASVXZ010000148         5621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_822731, whole genome shotgun sequence.
ACCESSION   DASVXZ010000148 DASVXZ010000000
VERSION     DASVXZ010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5621
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_822731"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1253)
                     /gene="dnaG"
                     /locus_tag="VF788_02945"
     CDS             complement(<1..1253)
                     /gene="dnaG"
                     /locus_tag="VF788_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX8933151.1"
                     /translation="MAGRIRDADIAEVRERNRIDEVVGEYVALRRAGADSLKGLCPFH
                     DEKSPSFNVRPGHGTYHCFGCGEGGSVVDFMMKIEHLGFVEAVERLADRVGIQLTYAG
                     GGSSVQRDRGTRSRLVEANKLAQEFYTEQLSSAQARPAREFLMERGFTQEAAATFGCG
                     FAPSGWDQLTKHLLGRGFTVDELIKAGVSREGQRGPMDRFHRRLLWPIRELGGDVVGF
                     GARRLFDDDRIEAKYLNTAETALYRKSQVLFGLDLAKREIARRRQVVVVEGYTDVMAM
                     HLAGVPTAVASCGTAFGGEHISVLRRMLMDDDALSGEVIFIFDGDEAGQKAALKAFDD
                     DQRFAAQTFIAIAPGGMDPCELRQVKGDAALGDLVARRQPLLEFKLRSLLAEHDLDTA
                     EGQVAALRRAVPFVAQFKDASLRDR"
     regulatory      2200..2264
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            2321..2527
                     /locus_tag="VF788_02950"
     CDS             2321..2527
                     /locus_tag="VF788_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HEX8933152.1"
                     /translation="MSVVSVPASIPIRIPFREILPWGIFIAVLGLLLLYFVGTEQGAI
                     SIISGHYVHEFVHDGRHLLGFPCH"
     gene            2561..3304
                     /locus_tag="VF788_02955"
     CDS             2561..3304
                     /locus_tag="VF788_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016332083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HEX8933153.1"
                     /translation="MMRVLLVRGMLSGLVAGLLAMVFAYIFGEPSIGSAIDFESAVQA
                     SRDESPEPELVSRTVQSTIGLAVAVELYAVAFGGLFALAFAIAYGRIGRMSAQVTAAV
                     LAMVGYLVVYVVPFLKYPASPPSVGNAETISERTGTYFGMVLLSLALAAAATYLGHRL
                     TSRLSTWNATLIASAAFIVAVVSAQLLLPGINEVPETFPATVLWNFRIASLGTQLVMW
                     ATIGLLFGALVVRQLESENPTKSRVSHAP"
     gene            complement(3288..4247)
                     /locus_tag="VF788_02960"
     CDS             complement(3288..4247)
                     /locus_tag="VF788_02960"
                     /inference="COORDINATES: protein motif:HMM:NF021982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HEX8933154.1"
                     /translation="MRTLLALVLIAVLAITVIAVEHLPAPGHPRLLVPNQAAGESGPV
                     SEVHTVTVDGVRRTYRAIVPAQPTGGLPLLIVLHGRGQSEPVVLSQTGFFGLAQQRQA
                     VLVLPDGEQRSWNAGHGCCGFAGSHQSSDVPFVAAIVTDAVRRWPIDAGRVYLVGYSN
                     GGKLAYSTMCAHPTLFAAVATYGAVPLSPCQPGTAAVSSLLAAGTADQVLPFHGKPGG
                     HPPLPAVPQAVAWLRSQDGCSRTALTEQDGSAMVQRWAGCAAGTDVESVIYAGFGHAW
                     PARTSGDSPAAATLMWAFLSRHEARTIRTAPGDVTPNQVMGRG"
     gene            4370..>5621
                     /locus_tag="VF788_02965"
     CDS             4370..>5621
                     /locus_tag="VF788_02965"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8933155.1"
                     /translation="MSVLRELLAERAACRPHRCCLADARSERAFDFAMLRTAADAWCQ
                     QLDAAGVPPGARVLVDIEDPLAFCAVHLSVIAAGRCSAPVDPTAPPAEADRTRRALRP
                     WLVVSDRPSVSGMCVHTATGLPTEPATPGSVAEPPGRLMGSVALLTSGSTGAPKTVVL
                     TERQLLHAARCVVSHHQLSAADCGFNPLPLFHINAEVVALLATVVAGGTLVLDRRFHR
                     TGFWQLLEERGITWVNAVPAILSILALDNVPTVAPELRFIRSASAPLPATARAQVASR
                     TGVAVVESYGMTEAASQITVTPLGGGHPPGSVGRPAGVELEVVGPDGRRCARNVMGRV
                     RIRGESVISAYADGVAAERFDAEGWLDTGDLGRLDDQGYLYLAGRRDDVVNCGGELVH
                     PGEVEEVLLGEAVVAEAAVAGCPHQ"
BASE COUNT          908 a         1833 c         1846 g         1034 t
ORIGIN      
        1 taccgatccc gcagtgatgc gtccttaaat tgcgcgacaa acggcacggc ccgccgcagt
       61 gcggcgactt ggccctccgc ggtatccaaa tcatgttcag cgagcaggga ccgtaacttg
      121 aactccagca gcggctgacg gcgtgccacg aggtctccca acgcggcgtc gcccttgacc
      181 tgacgcagct cgcatgggtc catcccgccc ggtgcgatcg cgatgaaggt ctgcgcggcg
      241 aagcgctggt cgtcatcgaa cgccttgagc gcggccttct gaccagcctc gtcaccatcg
      301 aagataaaga tcacttcgcc gctcaatgcg tcatcgtcca tgagcatcct gcgcagcacg
      361 gaaatatgtt ctccaccgaa tgccgtgcca caggaggcca ccgcggtcgg tactccggcc
      421 aggtgcatcg ccatcacgtc ggtatagccc tcgaccacga cgacctggcg gcgccgggcg
      481 atctctcgtt tggccagatc caacccgaag agcacctgcg acttgcgata cagcgcggtc
      541 tcggcggtgt tgaggtattt cgcctcgatg cggtcgtcat cgaacaaccg ccgggcaccg
      601 aaaccgacca catcaccgcc gagttcccgg atgggccaca gcagcctgcg gtggaagcgg
      661 tccatcgggc cgcgttggcc ttcccgggac accccggcct tgatcagttc gtcaacggtg
      721 aacccgcggc cgagtagatg tttggtgagc tgatcccatc cggagggggc gaagccgcag
      781 ccgaaagtgg ccgccgcttc ctgggtgaac ccgcgctcca tgaggaactc acgggccggc
      841 cgcgcctgcg cagagctcag ctgctcggta taaaactcct gggccagttt gttggcttcc
      901 accagccggg atcgggtgcc gcggtcgcgc tgcaccgagg agccaccccc ggcgtaggtc
      961 agctggattc cgacccggtc ggccagccgc tccactgcct cgacgaagcc caggtgctcg
     1021 atcttcatca tgaaatcgac gacggagccg ccttcaccgc agccgaagca gtggtaagtg
     1081 ccgtgcccag gacggacgtt gaacgacggg gatttctcgt cgtggaacgg gcagagcccc
     1141 ttgagcgaat cagcaccagc ccgacgcagc gcgacgtact cgccgaccac ctcgtcgatc
     1201 cggttgcgct cacggacctc cgcgatgtcg gcgtcccgga tgcgtccagc cacggtggcc
     1261 gagtctatgg ccggaccatg tcaggagtcc gcagggtggc gtcggcgggc gtgcgaacgc
     1321 acggggtccc cgccggattc cgggctcgcc gccaccgaaa tatctatccc ttgtgggttg
     1381 taccgaacac atccggttga tttgtagacc gctctcgttc atcttcggcg tgcagcgtcg
     1441 ccgcggtgga aatcggtgca ggcggcggat cttctcggca ccatcttgat ctgcggcgaa
     1501 ctggcagtca atttttcgtt agtcatgaac ttggacgcaa cctggtcgcc tcacgcgcgg
     1561 aagaggggag gccagccgaa gtattcaccc tcgaccccta attcgacggg ctattaggac
     1621 gagatatcac aggcaatcga gaagccccgg acgggcttgt taacactgaa caggagaaag
     1681 tgacatcgtg accagatttt ttacttcaca cggagttaaa gtcttggtgg tagctgccgc
     1741 cactatggga ggactcctca tcggtggcgt ggcgaatgcc gacaccgccg gagcctctcc
     1801 ggacaccggc actgggtccc ccgttggcgg tctgcttggc ggcacgggtc tggacgtagg
     1861 cgggcttgtc gggcccattc tgggcggagg ggctggcggc gcgctcggtc tcaacccatt
     1921 aggtttggtc gggtccgttc tccagccaat tctgggtggg ctttccggcg gcacgggtgg
     1981 ccttctcggt ggactgggtg gcgcgactgg tcttctcggc gggcaagggc actgaccagc
     2041 acctgaagac ccgctggtga gcgggagcca acagtccatg ctcccgctca ccgtctgccc
     2101 gaacggttcc gtgcgagctg agcgatctcg caccggtacg gtcgattgac gcggccgctt
     2161 ccgcatgcct accgtcatgt gatcgacgga gtggagtaag ccggtgtaag cccggcacgg
     2221 tcgcgccact gtgaacggca cctcatctgg tttcgtgagt cagacactcc gccgtcgtga
     2281 tcaccgatag tgggtcgcgt cagcccaggg aggtaccatc gtgagcgtcg tctccgttcc
     2341 cgcgtcaatt ccgattcgca tcccatttcg ggagatcctc ccctggggga tattcatcgc
     2401 cgtcctcggt ctgctgttgt tgtacttcgt cggcactgag cagggcgcga tctcgatcat
     2461 ctcgggtcac tatgtgcacg aattcgtgca cgatggtagg cacttgctcg gttttccctg
     2521 ccactgacgg ctactctgcg cacgatatga gcttacggcc atgatgcggg tgttgctggt
     2581 ccgcggtatg ctatccggct tggtagccgg gctgttggcg atggtgttcg cctacatctt
     2641 cggtgagccc tcgatcggta gcgcgatcga tttcgaatcg gcggtgcagg ccagccggga
     2701 cgaaagcccg gagccggagt tggtcagccg cacggtgcaa agcaccatcg ggctggccgt
     2761 cgccgtggaa ttatacgcag tggccttcgg aggcttgttc gcgcttgcgt tcgcgatcgc
     2821 gtacggccgc attggccgga tgtccgcgca ggtgacagcg gccgtgctcg cgatggttgg
     2881 ctatctcgtg gtgtacgtcg tgccattcct taaatacccg gccagcccac catcagtcgg
     2941 caatgccgag acgatcagcg agcgtaccgg gacatacttc gggatggtgc tgctgtcgtt
     3001 ggcgttggcg gcggcggcaa cctacctcgg ccatcggctc acgtcgcgtc tgagcacctg
     3061 gaacgccacc ctgatcgcga gcgcggcatt catcgtggcc gtcgtttcgg cgcaattact
     3121 gctaccaggc atcaacgagg tccccgagac gttcccagcc accgtgctgt ggaactttcg
     3181 gatcgcgtca ctgggcaccc agctggtgat gtgggccacc atcggcctgc ttttcggggc
     3241 gctggtggtc cgccagctag agtccgagaa tcccaccaaa agcagggtca gccacgcccc
     3301 ataacctgat tcggggtgac gtcaccggga gcggtgcgaa tcgtccgcgc ctcgtgccgg
     3361 ctgagaaaag cccacatcag cgtggcggcc gcgggtgagt caccgctagt tctggctggc
     3421 caggcatgtc cgaacccggc atagattact gactcgacat ctgtcccagc ggcgcaacca
     3481 gcccatcgct gtaccatcgc tgacccgtcc tgctcggtca gcgccgtgcg ggaacatccg
     3541 tcctgggacc gcagccacgc cactgcctgc ggcacggccg gcaacggcgg gtgcccacct
     3601 ggctttccgt ggaaaggcag tacctggtct gcggtgccgg cggcaagcaa ggacgacact
     3661 gcggcggtgc ccggttggca cggtgacaat ggcaccgcgc cataggtggc taccgccgcg
     3721 aaaagggtgg gatgcgcgca catcgtgctg taggcaagtt tgcccccgtt gctgtacccg
     3781 accaggtaca cccgcccggc atcgatcggc caccggcgca ccgcgtcggt cacgatcgcg
     3841 gccacgaacg gtacgtctga actctggtgg gagcccgcga atccacagca accatggccg
     3901 gcgttccatg accgctgctc cccgtcgggt aacaccagca cggcctgccg ctgctgggcc
     3961 agcccgaaga acccggtttg gctgagcacg acgggctcgg actggccgcg tccgtgcagc
     4021 acgatcagca gcggtagccc accggtcggt tgagccggga cgatggcgcg gtacgttcgc
     4081 cggacgccat cgactgtcac cgtgtgcacc tcgctgaccg gtccagattc gcccgccgcc
     4141 tggttgggga ccagcaaccg ggggtggccc ggcgcgggca aatgttcgac ggcaatgacg
     4201 gtgatggcca gcaccgcaat caggaccagc gccaacaggg tcctcacctg ctagcccaaa
     4261 ccaggcactg atcgacgggg cctggcctga ttgcccgtgc gccgcatgac acagagtatg
     4321 cccagttggc acccagctgg cgttcaggaa accaggccag catgcgccta tgagtgttct
     4381 tcgtgagctt ctcgctgagc gcgccgcatg ccggccgcac cggtgttgcc tggccgacgc
     4441 gcgcagtgag cgagctttcg acttcgcgat gcttcgcacc gccgcggacg cgtggtgtca
     4501 gcaactcgac gccgctgggg tgccgccggg tgcccgagtg ctcgtcgata tcgaggatcc
     4561 actcgcgttt tgcgctgtac acctctcggt gatcgccgcc ggacggtgtt cggcacccgt
     4621 tgatccgacc gctccaccgg ccgaggcaga ccgcacgcgg cgcgcgctgc ggccctggtt
     4681 ggtggtcagc gaccggccgt ccgtatcggg tatgtgcgtg cacacggcta ccggcctgcc
     4741 caccgaacca gcaacccccg gctccgtggc tgagccaccg ggccggctga tgggctctgt
     4801 cgcgctgctc acctccggtt ctaccggcgc gcccaagacg gtcgtgctca ccgaacgcca
     4861 gctgttacac gccgcgcggt gcgtcgtcag ccaccaccag ctctccgcag cggactgtgg
     4921 tttcaacccg ctgccgttgt tccacatcaa tgccgaagtc gtcgcgctgt tggccaccgt
     4981 tgtcgctggt ggcacgctgg tgctcgaccg gcggttccat cgcaccgggt tctggcagct
     5041 cctggaggag cgcgggatca cctgggtaaa tgcggttccg gccatcctgt cgattctcgc
     5101 acttgacaac gtccccacgg ttgccccgga gctgaggttc atccgctcgg cttccgcgcc
     5161 gctgccggcg acggctcgcg cgcaggtggc ctcacggacc ggggttgccg tggtggagag
     5221 ctatggcatg accgaggccg ctagccagat caccgtcact ccgctgggcg gcggtcaccc
     5281 gccgggatcg gtggggcggc cggctggggt ggagctcgag gtggtcgggc cggacgggcg
     5341 gcggtgtgcc cggaatgtga tgggccgggt tcgcatccgt ggggagagcg tgatcagcgc
     5401 gtatgccgac ggtgtggccg ctgagcggtt cgacgccgaa ggctggctgg acaccggtga
     5461 cctcgggcga ctggacgacc aagggtacct ctacctcgcc ggtcgccgcg atgacgtcgt
     5521 caattgcgga ggtgagttgg tgcatccggg tgaggtggag gaggttctcc tcggcgaggc
     5581 ggtggtggct gaggccgccg tcgccgggtg cccgcatcag g
//
LOCUS       DASVXZ010000149         3092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_15731, whole genome shotgun sequence.
ACCESSION   DASVXZ010000149 DASVXZ010000000
VERSION     DASVXZ010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15731"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..168)
                     /locus_tag="VF788_02970"
     tRNA            complement(98..168)
                     /locus_tag="VF788_02970"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(144..146),aa:Tyr,seq:gta)
     gene            403..1302
                     /locus_tag="VF788_02975"
     CDS             403..1302
                     /locus_tag="VF788_02975"
                     /inference="COORDINATES: protein motif:HMM:NF020032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933156.1"
                     /translation="MTDHGSGEGSRVPLEKAVEVLTGAPPLSIDARHFMTGGSGRVSF
                     GRSGFWMEVPSQGLVASPEVLIVYEIPPVDRWRLVAFQRQLSPEGPLSFDVDPDAWRN
                     ATDKRRTVDCFRRADIAQMETLALRRPDLGTALDAFERLGQDVWARPTIGAGGTDVFH
                     LTTRRHLRAALGHYAASDQDWLLSRDARNITQDGRRHQFRVVVLGDRVLRVCEHVQAD
                     PDAPCNESRGAVSTIIPAKDLPPQYRRLAIAATRSLGLPFGGVDLATENGGVVFEVNV
                     HPMLDVPEGLETVAIPFVQAHLR"
     gene            1996..2367
                     /locus_tag="VF788_02980"
     CDS             1996..2367
                     /locus_tag="VF788_02980"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX8933157.1"
                     /translation="MTATEFKRTEEDMLDYLDNAAIGLHWVDGNAMILWANPADYEPL
                     GYTADEYIGHSITEFHAEPDVINDILVRLLGGETLYNYKAKLLCKHGSTPSVLIASSG
                     LFDEEKNFIHTRCFTIKDPTA"
BASE COUNT          605 a          994 c          951 g          542 t
ORIGIN      
        1 acagtcgcaa acagccggac acggtcggac agcgccggac gcaacgtaga tcaccccacg
       61 acccggctgg tgctgattac gggcagtttt tgctgcgtgg cgggccaagg attcgaacct
      121 tggaaggcat cagccgacgg atttacactc cgctgccgtg ccgcccccga ggtaggcgca
      181 cgctcacgag cccgtctgcg caaccccagc accaccggcc cgcacagccg atggtctgga
      241 caggcgatcc cgtcgagctc cagcagcttg taacgggcct gggtcagccc gggctggcac
      301 gctggattgt gttctgagag tgcgaggcag cctgactgcg aatcggtcga taacgatcat
      361 ggaggagcgg tgtagtggat gggtacgggt ggggttgttc tgatgacgga ccatggttcg
      421 ggggagggca gtcgcgtccc gctggagaag gccgtcgaag ttctcaccgg tgcgccgccg
      481 ttgtcgatcg atgcccggca tttcatgacc ggtggtagtg gccgggtgag tttcggcagg
      541 agcgggttct ggatggaggt gccctcgcag gggttggtcg cgagccccga ggtgctgatc
      601 gtgtacgaga tccctcccgt tgaccgatgg cggttggtgg ccttccagcg gcaactgtca
      661 cccgagggac cgttgtcctt cgacgtggac ccggatgcct ggcgcaatgc caccgacaaa
      721 cggcgcaccg tcgactgctt ccgccgtgcg gacatcgcgc agatggagac gctcgcgttg
      781 cgccggccgg atctgggcac ggcgctggat gccttcgaac ggctcggcca agacgtctgg
      841 gcgcggccga cgataggagc gggcggcacc gacgtcttcc acctgaccac ccggagacac
      901 ctgcgcgccg cgctcgggca ttacgccgcg tcggaccagg actggttgct ttcccgcgac
      961 gcccgcaaca tcacccaaga tgggcgccgt caccagtttc gggtcgtcgt cctaggcgat
     1021 cgcgtactgc gagtgtgcga gcacgtgcag gccgatcccg acgcgccgtg caacgagtca
     1081 cgaggtgcgg tgtccacgat catccccgcc aaggacctcc cgccgcagta ccgccgcctc
     1141 gcaatagccg cgacgcgatc gctgggcctg cccttcggtg gcgtcgatct cgccaccgag
     1201 aacggcggcg tggtcttcga ggtcaacgtc catcccatgc tcgacgtacc tgaaggactg
     1261 gagacggtcg cgatcccatt cgtgcaggct catctccgat aaacacggcc cactccagag
     1321 ccatcgccac gaccaacaac ggacaccccc ttgcacacct tcctgtccta cagaaggcca
     1381 acaccctgcg cgcatccggt gatcttggtt cgtgcccctc gcgtgcccgg tctcacaggg
     1441 actcagggga aaccgcggac aacaacggtc agaatttcac tgaccgtaca ccagagacct
     1501 ccctgctcac aggccgttat aagccggacc tttgcaaggc gggggtccgt cacggtgcac
     1561 cgtgctactt gcgtgccatc aagaggcggt tcacatctca ggctccgccc ggacccggca
     1621 ccacttcgga gatgaggttg gggcagcggc aacccctcac ggcacgccga gacggctgcc
     1681 atcccgcaag gctggagcac atagcttgtg cccccacccc tcgggtggca gggaggacct
     1741 gcgccgcgga gaccacgacc gagctcgcac cgcgcggaag acgccttggc aagatcgacg
     1801 cctggatcat tggacgtcgg ggaacgccgt aggcgccggc gccacatcgc cggtgagtgg
     1861 tttgcgctga gaactaactt gattgtgacg acggggtaac ccaacgaatt ttaggagagc
     1921 gaactctcat tgtgcgcgca cagtggctcc gtcggggtcc actacgtgga gccggaactg
     1981 aagggactga gagtcgtgac agcgacagag ttcaagcgga ccgaagagga catgctcgac
     2041 tacctcgaca atgccgccat cggtctgcac tgggtagatg gtaacgccat gatcctctgg
     2101 gccaacccag ccgattacga gcctctcgga tacaccgctg atgagtacat cgggcacagc
     2161 atcaccgaat tccatgccga gcctgacgtc atcaacgaca tcctggtccg cctcctcggg
     2221 ggcgaaaccc tgtacaacta caaggccaaa ctcctatgca agcacggctc gacacccagc
     2281 gtcctcatcg cctccagcgg tctgttcgac gaagagaaga acttcatcca cactcgctgc
     2341 ttcaccatca aggatcccac ggcgtaagcg cccagaacca acgcccgcgg ctcccgggga
     2401 acactaggcc gggagctctg ggcttcttgt gaagcgtcag cgccgagggg aacctcagcg
     2461 taaccgtgcg aggatagctc acgagtcaga aggcaacacc gcagtccagc gtcacccata
     2521 acgaatcatc gacgaacacg gcaagaatgt cacggaccgt cgagcggata ggtccccagc
     2581 ccatgccgtg ctacggtcca cacctttaca cggcagaggt cggatccggt gcgtcgtgcc
     2641 acacgcgtgc cacaagaggg ggtcagcaac ggtcaactgg ggtcactcct gaccacggtt
     2701 gagcgcaggt caaggcctag accagggcgt cattagaggg ttcccaagct ctagacgcgg
     2761 gttcgattcc cgtcacccgc tccaccataa aagcccagtt cagattgttc cctgtagacg
     2821 tgagccttgc cttaacggtc aagtttgtcg gcgtgctatc tacgtgcgct taggcagcag
     2881 gtaggaggtg cccagtttcg ggaagcatat gcttgcatcg ctcctcagct ggcggcttta
     2941 ggagacgcgg cggcgagcgt tgctacaagt tcttcgatac tgattgtcgc atatcatatc
     3001 cggcaggtta cgccccgaga agtggaggtt tattcgtttg ccaccccagc cgtgaccgcg
     3061 ataccttttc aacttcctta gtgcgcgccg ac
//
LOCUS       DASVXZ010000150         5142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_822917, whole genome shotgun sequence.
ACCESSION   DASVXZ010000150 DASVXZ010000000
VERSION     DASVXZ010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5142
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_822917"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..1034)
                     /gene="rsmH"
                     /locus_tag="VF788_02985"
     CDS             complement(24..1034)
                     /gene="rsmH"
                     /locus_tag="VF788_02985"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEX8933158.1"
                     /translation="MPAGHDCASGSPQHAPVLLLRCLELLEPALAGRPAVALDATVGL
                     GGHAAALLDAHPELTLFGIDRDPQALAVACDRLQAYSGRVHLVHAVYDELPEVLHRLG
                     APRVDSVLFDLGVSSLQLDITERGFSYARDAALDMRMDPSVGPTAADVLNAYPEGDLR
                     RVIRDYGEERFASRIAAAVVAQRARRPFETTSQLVDVVYQSVPAATRRHGGHPAKRTF
                     QALRIEVNGELAALRSAVPAALDALAVGGRLVAMSYHSLEDRIVKKSLAALSTSRTPA
                     GLPIELPDHGPQLRGLTRGAERAGPAEIELNPRAASVRLRAVQRIAPPGKYGSDRPES
                     GS"
     gene            complement(1327..1758)
                     /gene="mraZ"
                     /locus_tag="VF788_02990"
     CDS             complement(1327..1758)
                     /gene="mraZ"
                     /locus_tag="VF788_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0051302 - regulation of cell division
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEX8933159.1"
                     /translation="MFLGTHTPRLDDKGRLTLPAKFRDALAGGLMVTKGQDHCLYVFP
                     RAEFEDMARKVAQAPFTNEAVRAYQRYLFAGTDEQRPDGQGRISIAADLRRYAGLSKD
                     CAVIGAINRLEIWDSAAWQRYLDEHEESYAQAQEEVLPGVM"
     gene            2270..3286
                     /locus_tag="VF788_02995"
     CDS             2270..3286
                     /locus_tag="VF788_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX8933160.1"
                     /translation="MDNVERILVGKPDAVRLTLITLLAGGHLLLEDVPGVGKTSLAKA
                     LARSIDGTVTRIQFTPDLLPSDITGVSVFNRSTGDFDFRTGPVFANVVVGDEINRASP
                     KTQSALLECMEEHQVTVDGHSYPLAGPFMVIATQNPIEMEGTYPLPEAQRDRFTARIS
                     LGYPDPAAELAMVDEHAGTDPFATLAAVSTAAEVEALCEAIRLIHMSTDLRRYVVEVV
                     RATRTLPELRLGGSPRATLQLIRTSRASAALAGRDFVLPDDVQEMAQPVLSHRLVLTA
                     QAQVDRRSPEDLVRDVLARVPVPQAPKHPPAVRLDGSASAGTGIEPGRDRIAAFWPRA
                     PQRR"
     gene            3287..4525
                     /locus_tag="VF788_03000"
     CDS             3287..4525
                     /locus_tag="VF788_03000"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEX8933161.1"
                     /translation="MRGRLGGLTTRGRCLLAAGFAAALCAVLVNERDLLRMAAFAIML
                     PVLASVVAVRTQIRLQADRALLPSRASVGDDCQAHLTLRVTGRCSGRLLLEDLVPQEL
                     GGPRRAVVARPLQHREVQLSYRLRPAARRVHSLGPLTVRVTDPLGLAQYSQTLAGNSA
                     LVVLPAVVPLVGLPTGGELGSGATGAGSGQDAVVVRSYQQGDDLRRVHWRTSARRDEL
                     MVRVEEWSERSEVTVLLDHRAAAHRGAGPISSLEYAVSLTASVYVHLRRRSPQVRLIT
                     ADGALLVSAGNGAANSTDTALDALAALCATEQRDLANVPELFGRHDVFAVLGAVGPAA
                     VEQLLAKHLRAARGHAILLDVAAWATDVDGRVAPNPAKAARLLTAAGWSVTVAGPDQS
                     PSAVWGHMCAGSPGAQRVPR"
     gene            4522..>5142
                     /locus_tag="VF788_03005"
     CDS             4522..>5142
                     /locus_tag="VF788_03005"
                     /inference="COORDINATES: protein motif:HMM:NF023418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminaseTgpA domain-containing protein"
                     /protein_id="HEX8933162.1"
                     /translation="MTGWTARALPAAAAGLAVAFAATSLTGVLTGGRWWSFVVLSVAV
                     VAASGVLLRWLQMPPIVAAAGQLAALVGLVTAVFTSSGWLVVLPGSAARSHLAAVLTR
                     AAQQIRVGIPPVPESPELLCLLVVVVGLVALAVDTLAVSVGAPASAGLILLCVITVPV
                     ATSDRMLPWWSFALSAAGFALLLAVDTARRQLGWGESVDSGSVGPGR"
BASE COUNT          790 a         1717 c         1793 g          842 t
ORIGIN      
        1 ggtcgcggcg tgcgcgggag cagtcatgag cccgactccg ggcggtcgga tccgtacttg
       61 ccgggcggtg cgattcgctg cacggctcgt agccgtaccg acgctgcccg cggattgagc
      121 tcgatctcgg ccggtccggc acgctctgcg ccacgggtca acccgcgaag ctggggtccg
      181 tgatccggca gctcgatcgg caggcccgct ggggtacgag aagtgctcaa cgcggccagg
      241 gactttttga cgatccggtc ttccaatgag tggtaggaca tcgcgaccag ccgaccgccg
      301 accgccagcg catccagcgc ggcgggcacg gccgagcgca gcgctgcgag ctcgccgttg
      361 acctcgatcc gcaatgcctg gaaggtccgt ttggcgggat ggccaccgtg ccggcgggta
      421 gctgccggca cactctgata gacgacgtcg accaactggg aggtggtctc gaagggccgc
      481 cgagcccgct gtgccacgac cgcagcggcg atccggctgg cgaagcgctc ctccccgtaa
      541 tcccggatta ctcgccgcag atcaccctcc gggtaggcat tgagcacgtc agccgcagta
      601 ggacccacgc tgggatccat ccgcatgtcc aacgcggcgt cccgggcata ggagaaacca
      661 cgctcggtga tgtcgagctg tagcgaggac acgcccaagt cgaacaacac gctatcgacg
      721 cgaggggcgc caaggcggtg caggacctca ggtagctcgt cgtagaccgc atgcaccaga
      781 tgcactcgcc ccgagtaggc ctgcagccga tcgcaggcca ccgcgagcgc ttggggatca
      841 cggtcgatgc cgaacaacgt gagttccgga tgagcgtcaa ggagcgcggc ggcgtgcccg
      901 ccgaggccaa ccgtcgcgtc gagcgccacg gccggcctgc ccgccaacgc tggttcaagc
      961 agctcgaggc accgcagcaa cagaacgggc gcatgctggg gtgacccgga agcgcagtca
     1021 tggccagcgg gcatctgatc agccaccgcc agcctccctc cgctcactcc cgcctctctc
     1081 accacaatcc cgatatggag ccatgtcggg gtaatcgagt actgaactgc cccgatatgg
     1141 ctccatatcg ggattgttga cacggtggcg cgaggtctcc gcccggtgcc agaacctggc
     1201 gccagggaag gtgcgtcagg gctggagtgg tccgtggttg tcgggttagt gcgcatcggg
     1261 tgttgagaac acggtgttgc tcaacacagt ggatgcgtct ccggacggag gcctcgcgtc
     1321 accgggtcac atcacgccag gtagcacctc ctcttgtgcc tgggcgtagg actcctcgtg
     1381 ctcgtccagg taacgctgcc acgcagcgct gtcccagatt tccaaccgat tgatcgctcc
     1441 gatcaccgca cagtccttgc tcagcccggc gtagcgccgc agatcggctg cgatggagat
     1501 gcgtccctgc ccgtccggcc gctgctcgtc ggtgccggcg aacaaataac gctggtaagc
     1561 gcgcaccgcc tcattggtga acggcgcctg cgccaccttg cgggccatgt cctcgaactc
     1621 ggcacgcggg aagacgtata ggcagtggtc ctgacccttg gtgaccatta atccccctgc
     1681 gagcgcgtcg cggaacttcg ccggcaacgt caaccggccc ttgtcgtcga gccggggtgt
     1741 gtgcgtgccc aggaacacgg ccacccactt ccccgccacc ggcggacccc cgtggaacac
     1801 cctcgtgctc cacgggggcc cacactaccc cactttccgc cactgtcaac gtccgaacgc
     1861 tctccgactt ctgcaccacg cgtgatcagg ccagctcagc ggcagtgggt gaacgtgggg
     1921 taaccgctcg acgtaccggc tggcagcacc tcgaagcgct cccgggaacg cggtgatgac
     1981 cgctggaacg tctgcaccgg actgcggagg tcctcggtgg gggaaagtgg cgggacccgc
     2041 tcgaccgata ccggcacccc ctaggcaggg atggccatcc cgcaaggtgg gggttgtgac
     2101 ccggtttgac agacttaccc ggcgctgggt tccactgacc tcgtacacca gcgaagacgc
     2161 ctggaggagg tcgagtgagc ccgcgagatc tgctcgtcag gatcgagcca tgaacgaccg
     2221 agtcccgcat cagcaggtgg tggacgtgca cgccgtcgcg caccggatca tggacaacgt
     2281 cgaacgaatc ctggtgggca agcccgacgc ggtgcgtctc acgttgatca ccttgctcgc
     2341 cgggggacac ttgctgctgg aggacgtgcc aggagtgggc aagacatcgc tggccaaggc
     2401 gttggcccga tccatcgacg gaacggtgac ccggatccag ttcactccgg acctgttgcc
     2461 cagcgacatc accggggtat ccgtcttcaa tcgcagcacc ggcgatttcg acttccggac
     2521 cggcccggtc ttcgccaacg tcgtagtcgg ggatgagatc aaccgggcct cccccaagac
     2581 ccagtccgcg ctgctggagt gcatggagga gcaccaggtc acggtcgatg ggcacagcta
     2641 cccactggcc gggccgttca tggtgatcgc tacccagaac ccgatagaga tggagggcac
     2701 ctacccgcta cccgaagctc agcgtgaccg gttcaccgcc cggatctcgc tgggctaccc
     2761 cgaccccgcc gcggagctcg cgatggtcga tgagcacgca ggtaccgacc ccttcgccac
     2821 cctggcggca gtgtctaccg ctgccgaggt ggaagccctg tgcgaggcca ttcgactgat
     2881 ccacatgtcg accgacctgc gacggtacgt ggtggaggtg gtgcgagcga cccggacatt
     2941 gcccgagctc cggctgggcg gctcaccccg cgcgacactg cagctgatcc gcaccagccg
     3001 ggcgagtgcc gcgctagccg ggcgcgattt cgtgctaccc gacgacgtac aggagatggc
     3061 ccaaccggtg ctgtcccacc ggctggtgct caccgcacag gcacaggtgg atcggcgctc
     3121 gcctgaggac ctcgtgcgcg atgtgttggc gcgcgtaccc gtaccccagg cgccgaagca
     3181 tccaccagcg gtcagactcg atggcagtgc cagcgccggg accggcatcg agcctgggcg
     3241 ggaccgcatc gcggcattct ggccccgcgc accgcagagg cgttaggtgc gcgggcggct
     3301 cggcggcctg accacccggg ggcgttgcct gctcgctgcc ggattcgcgg cagcgttgtg
     3361 cgcggtgctg gtcaatgaac gggacctgct acggatggcg gccttcgcta tcatgcttcc
     3421 ggtgctggcc agcgtggtcg ccgtccgtac ccagatcagg ctgcaggcgg accgagcgtt
     3481 gctaccgtcc agggcttcgg tcggtgacga ttgccaggcg cacctgacgc tgcgcgtcac
     3541 cggccggtgc agcggccggc tactcctcga ggacctggtg ccccaggagc tgggcggccc
     3601 ccgccgggcc gtggttgcgc ggccgctgca gcaccgagag gtgcaactga gttaccggct
     3661 gcgcccggcc gcgcgcaggg tgcactcgct cggtccgctg accgtgcggg tcaccgatcc
     3721 actcggcctg gcgcagtaca gccaaaccct ggccgggaac agcgccctgg tggtgcttcc
     3781 cgcggtggtg ccgctggttg gcttgccgac cggaggtgag ctaggcagcg gtgcgacggg
     3841 cgcaggctcg ggtcaggacg ccgttgtggt gcgcagctac cagcagggcg acgacttgcg
     3901 cagagtgcac tggcgcacga gcgcccggcg ggacgagttg atggtccggg tcgaagagtg
     3961 gtcggagcgc agcgaagtca ccgtgctact ggatcaccgc gctgcggcgc accgcggcgc
     4021 cggtcccatc tcaagcctgg agtacgcggt gtcgctgacc gccagcgtgt atgtacacct
     4081 gcggcggcgg agtccccagg tgcggctgat cactgcggac ggcgcgttgc tggtgagcgc
     4141 cggtaacggc gccgcgaact ccacggacac cgcgctcgac gcgcttgccg cgctgtgcgc
     4201 gaccgagcag cgggacttag ccaatgtgcc ggaattgttt ggcagacacg atgtgttcgc
     4261 ggtgcttggg gccgtcgggc cggcggcggt ggaacagctt ctggcaaagc atctgcgcgc
     4321 cgcacgcggc catgcgatcc tgctggacgt cgcggcgtgg gccaccgacg tggatggccg
     4381 ggtcgccccc aatccggcga aggccgcacg gctgctgacg gcggctggct ggtcggtcac
     4441 ggtggcaggg ccggatcagt cgccctccgc ggtatggggt cacatgtgcg ccggctcacc
     4501 tggtgcgcag cgggtgcccc ggtgaccggg tggacggccc gggcactgcc ggcggccgcc
     4561 gccgggttgg ctgtcgcatt cgccgcaacg tcgttgaccg gggtgctcac cggcgggcgc
     4621 tggtggagct tcgtggtcct gagcgttgct gtggtggctg cttcgggcgt gctgctgcgc
     4681 tggctgcaga tgccaccgat cgtggctgcg gctggtcaac tcgccgcgct ggtggggctg
     4741 gttacggcag tgttcacctc cagcgggtgg ctcgtcgtgc tgcctggatc agccgcgaga
     4801 tcgcacctgg ccgcagtgct gacgcgtgcc gcccagcaga tccgggtcgg catacctccg
     4861 gtgccggaga gcccggagct gctgtgtctg ctagtggtcg tcgtcggact ggtagccctt
     4921 gcggtggata ccctggcggt atcagtcggc gcgcctgcct cggctgggct gatcctgctg
     4981 tgtgtgatca ccgtgcccgt cgcgacgtcg gaccggatgc tgccctggtg gagtttcgcg
     5041 ctgagcgcgg cgggcttcgc actgctgctc gcggtggaca ctgcgcgcag gcagctcggg
     5101 tggggcgagt ctgttgactc tggcagcgtt ggccctggaa gg
//
LOCUS       DASVXZ010000151         1816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1181892, whole genome shotgun sequence.
ACCESSION   DASVXZ010000151 DASVXZ010000000
VERSION     DASVXZ010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1181892"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..>1816)
                     /gene="ilvD"
                     /locus_tag="VF788_03010"
     CDS             complement(145..>1816)
                     /gene="ilvD"
                     /locus_tag="VF788_03010"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX8933163.1"
                     /translation="ESIAAAGGVGREFNTIAVDDGIAMGHGGMLYSLPSRELIADAVE
                     YMVNAHCADALVCISNCDKITPGMLLAALRLDVPTVFVSGGPMEAGRTVSTDGVVRRR
                     LDLISAMSAAADDAVSDEQLSEIENAACPTCGSCSGMFTANSMNCLVEALGLGLPGNG
                     SLLATHAARRTLFSAAGTTVVELARRYYDGDDPSVLPRAIASQGAFANAMALDVAMGG
                     STNTVLHLLAAAQEGGVGFGLKEIDEVSRRVPCVAKVAPNGDYYLEDVHRAGGIPAIL
                     GELDRGGLLNREVHSVHSPSLAEHLRRWDVRGGTASPEAVELYHAAPGGVRTTEPFST
                     TNRWESLDVDAERGCIRDVAHAYTADGGLAVLWGNLAPDGCIVKTAGVDEDLWRFSGP
                     AKVFESQEATVEAILNGGVTAGDVVVVRYEGPRGGPGMQEMLYPTAFLKGRGLGKRCA
                     LITDGRFSGGSSGLSVGHVSPEAAAGGVIALVQDGDQVTIDIPARSITLDVASDELRA
                     RRERHVAEHGTFTARNRERPVSAALRAYAAMATSASTGAVRDVNLLRP"
BASE COUNT          314 a          663 c          564 g          275 t
ORIGIN      
        1 cccagcacag cggcaacaag caccgccgcc agcaggagac ggagcttcgg aggagacctc
       61 gttgctctgc tcacccgggg cttggagtcg gaaccgcctc ggttatggct gtcccctccc
      121 tcggcggatg cgcagtgtgc gcggtcaggg acgtagcagg tttacgtcac gcaccgcgcc
      181 ggtggaagcc gaggtcgcca ttgccgcgta tgcccgcagc gcagcactta ccggccgctc
      241 tcggttcctg gcggtgaaag tgccgtgctc ggccacgtgc cgctcccggc gagctcgcag
      301 ctcgtcggaa gccacgtcta gggtgatgct ccgggccgga atgtcgatcg tcacctggtc
      361 gccgtcctga accagggcga tcactccccc agcagccgcc tccggcgaga catggccgac
      421 ggacaacccg gagctaccac cagaaaaccg cccgtcggtg atcagcgcgc accgcttgcc
      481 caggcctcgg cccttgagga aggccgtcgg gtagagcatc tcctgcatgc caggtccgcc
      541 acgcggaccc tcgtagcgca ccaccaccac gtcaccagcg gtcacgccac cattgaggat
      601 cgcctcaacc gtggcctcct ggctttcaaa gacctttgct ggaccggaga accgccacag
      661 atcttcatcc actccggcgg tcttgacaat gcagccatcc ggcgccaagt tgccccacag
      721 caccgccagc ccaccatcgg cggtataagc gtgtgccaca tcgcggatgc agccacgctc
      781 ggcatccaca tccaggctct cccaccggtt ggtggtgctg aacggctcgg tggtacgcac
      841 accgccgggt gcggcgtggt aaagctccac ggcctctggt gaggcagtgc cgccgcggac
      901 atcccaccga cgcagatgct cagccagcga cgggctgtgc acgctgtgca cctcccggtt
      961 cagcaggccg ccccggtcca gctcgccaag aattgccggg ataccgcccg ctcggtgcac
     1021 gtcctccagg tagtaatccc cattcggggc caccttggcc acgcagggca cccggcgaga
     1081 gacctcgtcg atctctttga gcccgaaccc cacgccgccc tcctgcgctg cggcgagcag
     1141 gtgcagcacc gtattggtgg acccgcccat cgccacatcc aaggccatcg cgttggcgaa
     1201 cgcgccttgg ctggcgatcg cgcggggcag taccgacggg tcatccccgt cgtagtaacg
     1261 ccgggccagc tcgaccacgg tcgtgcccgc agcagagaac aacgtccggc gagccgcgtg
     1321 cgtggcaagc aacgagccgt tgccgggcag tcccaacccc aacgcctcga cgaggcagtt
     1381 catcgagttc gcggtgaaca tcccagaaca ggacccgcag gtcgggcagg ctgcgttctc
     1441 gatctcgctg agctgctcgt ccgagaccgc gtcgtcagcg gcggccgaca tcgcgctgat
     1501 caggtccagc cgacggcgga ccactccatc cgtggagacg gtacggccgg cctccatggg
     1561 gccgcccgag acgaacacgg tggggacatc tagccgcagc gcggcgagca acatccccgg
     1621 ggtgatcttg tcacagttcg aaatgcagac cagggcgtcg gcgcagtgcg cgttcaccat
     1681 gtactccacc gcgtcagcga tcagctcgcg gctgggcagc gagtagagca tgccgccgtg
     1741 gcccatcgcg atgccgtcat ccaccgcgat cgtgttgaac tccctgccca ccccgccggc
     1801 agcggcgatc gactcg
//
LOCUS       DASVXZ010000152         2606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_994244, whole genome shotgun sequence.
ACCESSION   DASVXZ010000152 DASVXZ010000000
VERSION     DASVXZ010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994244"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..663
                     /gene="ruvC"
                     /locus_tag="VF788_03015"
     CDS             88..663
                     /gene="ruvC"
                     /locus_tag="VF788_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020635994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEX8933164.1"
                     /translation="MRVLGVDPGLTRCGLGVVDGGAGRTVSCVAVDVVRTLPEADLGA
                     RLIAVADVVECWLAEHRPDVVAVERVFSQHNVRTAMGTAQVSGVVALIAARRGLTVAF
                     HTPSEVKAAVTGSGRAGKEQVTTMITRLLALPAKPRPADAADALALAVCHLWRAPMTQ
                     RLAQARAQSARLAQAHRAKLAAAARRAGAPG"
     gene            660..1271
                     /gene="ruvA"
                     /locus_tag="VF788_03020"
     CDS             660..1271
                     /gene="ruvA"
                     /locus_tag="VF788_03020"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEX8933165.1"
                     /translation="MIASVRGQVLSVDLDHAVVEVGGVGLAVHAVPATLATLRRGEQA
                     RLATSLVVREDSLTLYGFANAAARELFVLLQTVSGVGPRLALATLAVLEPDTLCAALA
                     DGDLTTLTRVPGIGRKGAERLVVELRDKVGGFTPTASGPAAHGGGGVRTQVAEALVGL
                     GFAARQAEQAVDAVLAEADPESASTSDTSALLRSALTRLGRNR"
     gene            1268..2308
                     /gene="ruvB"
                     /locus_tag="VF788_03025"
     CDS             1268..2308
                     /gene="ruvB"
                     /locus_tag="VF788_03025"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEX8933166.1"
                     /translation="MTNPRPVSAVVDPADVELETTLRPRRLPEFIGQARVREQLELVL
                     EGARRRGAAPDHVLLSGPPGLGKTSLAMIIAAELGSAIRVTSGPALERAGDLAAMLSN
                     LVEGDVLFIDEIHRVARPAEEMLYLAMEDFRVDVVVGKGPGATSIPLEIAPFTLVGAT
                     TRSGALTSPLRDRFGFTGHMEFYEPDELELVLHRSAGILGVDLRPEGATEIAARSRGT
                     PRIANRLLRRVRDYAEVRADGAITLEVARAGLAVYDVDQLGLDRLDRAVLTALVRTFG
                     GGPVGVSTIAVAVGEEPATVEEVCEPFLVRAGMLARTPRGRVATAAAWRHLRLEPPAD
                     ALSEPAPTLFDG"
     gene            complement(2315..>2606)
                     /locus_tag="VF788_03030"
     CDS             complement(2315..>2606)
                     /locus_tag="VF788_03030"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005384 - manganese ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030026 - intracellular manganese ion
                     homeostasis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEX8933167.1"
                     /translation="EALSDDGEQTGRGSAITRGSITGVMTTVGGVFHALPFLIPDRTG
                     ALVLAAIVVAVELGVIALIRKRYLEVSLRTSLIQVVLGGILIVGVGLWLGGL"
BASE COUNT          371 a          848 c          948 g          439 t
ORIGIN      
        1 tgcactcgcc cgggtgtgtc gaggttgcga gatggggaag gggggttagg gttcgaacgg
       61 gtgtttgggt cgtcgttggg aggtgcggtg cgggtgctgg gggttgatcc tggccttacc
      121 cgctgcgggc ttggggtggt cgacggtggt gccggccgga ccgtcagctg tgtggccgtc
      181 gatgtcgtgc gtaccttgcc cgaggccgat ctcggtgcgc ggctgatcgc ggtggctgat
      241 gtcgtggaat gttggttggc cgagcaccga cctgacgtgg tcgcggtgga acgggtcttc
      301 agccagcaca acgtgcgcac cgcgatgggc actgcccagg tcagcggagt ggtggccctg
      361 atcgcggcgc ggcgcgggct cacggtcgcc tttcataccc ccagcgaggt caaggcggcc
      421 gtcaccggtt ccggccgcgc cggaaaggag caggtaacta ccatgatcac ccggttactc
      481 gctctgcccg ccaagccgcg gccggctgac gccgcagatg cactcgcgct cgcggtctgt
      541 cacctgtggc gggccccgat gacacagcgg ctcgcccagg cgcgagccca gtctgcgcgg
      601 ctggcgcaag cccaccgggc gaagttagcc gccgcagccc gacgggcagg agcgcctggg
      661 tgatcgcctc ggtgcgtggt caggtgcttt ccgtcgactt ggatcatgcc gtggttgagg
      721 tcggcggggt cgggctggca gtgcatgcag tgccagccac cctggccacc ttgcggcgcg
      781 gcgaacaggc ccggctggct acgtcgctgg tagtgcgcga ggactcactg acgttatacg
      841 gcttcgccaa tgctgcagca cgggaattgt tcgtgttgct gcagaccgta tccggggtgg
      901 ggccccggct cgccctggcg acgctcgccg ttctcgagcc agacacgctg tgtgctgcac
      961 tggccgatgg cgacctcacg acgctcaccc gggtacccgg catcggacgc aagggcgcgg
     1021 agaggctggt cgtggagctg cgggataaag tggggggatt cacgcccacc gcgtccgggc
     1081 cggcggccca cggcggaggc ggggtgcgga ctcaggtggc tgaggcgctc gttgggctag
     1141 ggttcgcagc ccggcaggcc gagcaggccg tggatgccgt gcttgccgaa gccgatcccg
     1201 aatcggcgtc tacgtcggac acctctgcgc tgcttcgcag tgcactgacc cggctggggc
     1261 gcaaccggtg accaacccgc gaccggtctc cgccgtggtg gacccggctg acgtcgagct
     1321 ggagaccacc ctgcggcccc gccggctgcc tgaattcatc gggcaggccc gggttcgcga
     1381 gcagctggag ctggtcctgg agggtgcccg gcgacggggt gccgcaccgg atcacgtact
     1441 gctctccgga cccccggggt tgggcaagac gagcctcgcc atgatcattg ccgcggaact
     1501 tggcagcgcg atccgggtga cctcgggacc ggcgttggag cgcgctgggg acctcgctgc
     1561 gatgctgtcc aatctcgtcg agggtgacgt gctgttcatc gacgagatcc accgggtggc
     1621 ccgccccgcc gaagagatgc tttacctcgc gatggaggat ttccgggtcg acgtcgtggt
     1681 cggcaagggt cccggagcca cgtccatccc gctggagatc gccccgttca cccttgtcgg
     1741 agctaccact cggtccggtg cgctgaccag cccgctgcgg gaccggttcg gattcaccgg
     1801 gcacatggag ttctatgagc ctgacgagct cgaactggtg ctgcaccgct ccgctggcat
     1861 cctcggtgta gacctgcgcc ccgagggcgc taccgagatc gccgctcgct cccggggcac
     1921 gccccgcatc gccaaccggc tactgcgccg ggtccgggac tacgctgagg tacgcgccga
     1981 cggtgcgatc actcttgaag tagcgcgggc gggtctggct gtctatgacg tcgatcaact
     2041 cgggttggac cggctggatc gcgccgtgct gaccgcgctg gtgcgcacct tcggcggcgg
     2101 accggtcgga gtgtccacca tcgcggttgc ggtaggggag gagccggcca ccgttgagga
     2161 ggtgtgcgag cctttcctgg tccgcgccgg catgctggcc cgtaccccgc gcgggcgggt
     2221 ggccactgcc gccgcgtggc ggcacctgcg cttggagcca cctgccgatg ctctctcaga
     2281 gcccgcaccg acgttgttcg atggttgaga accttcagag cccaccgagc cacagcccaa
     2341 cgccgacgat caagatgccg ccgagaacga cctggatgag tgaggtgcga agcgagacct
     2401 ccaggtagcg cttacggatg agggcgatca ccccgagctc gacggcgacc acgatggctg
     2461 cgagcaccaa tgcgcccgtc cggtccggga tcaagaacgg taaggcgtga aacacaccgc
     2521 ccaccgtggt catcaccccg gtgatcgatc cgcgagtgat ggccgagccc cgacccgtct
     2581 gttcgccgtc gtcggagagc gcctcg
//
LOCUS       DASVXZ010000153         3561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1540757, whole genome shotgun sequence.
ACCESSION   DASVXZ010000153 DASVXZ010000000
VERSION     DASVXZ010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1540757"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VF788_03035"
     CDS             complement(<1..198)
                     /locus_tag="VF788_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933168.1"
                     /translation="MTAAGPTTGRIRAAGRAMRRRWDLRRHWALRRGLPIRRVWAGTP
                     LWLRLVAAVLALVALALGAAGV"
     gene            complement(195..899)
                     /locus_tag="VF788_03040"
     CDS             complement(195..899)
                     /locus_tag="VF788_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933169.1"
                     /translation="MTTTSPEARLLVVDDEPNIVELLSASLRFVGFEVTTATDGVEAM
                     QQARRSRPDLLVLDVMMPGLDGFDMVRRLRGEGLQMPVLFLTARDATADRITGLTLGG
                     DDYVTKPFSLEEVIARIRAILRRAGAVTEAASAQLCFADIELDDDTHEVRKAGELVEL
                     SPTEFKLLHYFMRNPGRVLSKTQILEHVWNYDFNGDTGVIESYISYLRRKLDTGEPRL
                     LHTVRGVGYVLRVPRT"
     gene            1193..1711
                     /locus_tag="VF788_03045"
     CDS             1193..1711
                     /locus_tag="VF788_03045"
                     /inference="COORDINATES: protein motif:HMM:NF039822.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5666 domain-containing protein"
                     /protein_id="HEX8933170.1"
                     /translation="MNETPQPYDPTAMIPEHTGPAGRPPRGAWLSRLATPMVAGGVAL
                     LLAGVAGGYLLGSRGPGTAPTNVVSPAAEGSFDPYSGSTRCGPCGPRGFGHGGRGAVG
                     TIDSVNGTTIMLTTRNGRKVSVTAPGTVAVTLRTPGSVADLKPGQSVVVSGQRGTDGS
                     ITANRIDVGAPR"
     gene            1708..2961
                     /locus_tag="VF788_03050"
     CDS             1708..2961
                     /locus_tag="VF788_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
                     /protein_id="HEX8933171.1"
                     /translation="MSTTVTAEHRSGPDPDPLRTALIEIVIPVHNEERELAGCVQVLH
                     TYLHEHLPFPATITIADNASTDTTPQVARALAEALPDVRVLRLEGKGRGRALRAAWSA
                     SDADVVAYLDVDLSTGLDALLPLVAPLVNGHSDLAIGSRLAPGARTVRGAKRELISRG
                     YNALVQLLHCASFSDAQCGFKAARTEMIRPLLAVTTDDGWFFDTELLLLAEHNGLRIH
                     EVPVDWVEDLDSRVALAATAWEDLCGLLRVARAKARGTAIVTGLPQRPAPCAAHPNAV
                     LAPRRSTRATWQTIAFAVIGLLSTLATVALYALGREWWSPLGANLVALTLTTVFNTEA
                     NRRFTFTGTGRSLVRVHTQAALVFLGYYALTSVALLAVGSLVRQPSRALEVGVLLGAS
                     VLGTIGRFLLLRGWVFAARSPHKDM"
     gene            2961..>3561
                     /locus_tag="VF788_03055"
     CDS             2961..>3561
                     /locus_tag="VF788_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX8933172.1"
                     /translation="MTAATLAPPAVPAPTAPRRDPRWARPALAGLLGVTALLYVWGLG
                     ASGYGNTFYSAAVQAGATSWKAFLFGSSDAANSIMVDKPPASLWVAELAVRIFGLSPW
                     SVLVPQALEGVAAVGVLYAAVRRWHGPAAGLLAGAVLALTPVAVLMFRFNNPDALLVL
                     LLVLGGYALVRALEAGRTGWLVAAAVFIGFGFLTKMMQAF"
BASE COUNT          498 a         1261 c         1195 g          607 t
ORIGIN      
        1 cacgcctgcg gcgcctagtg ctagtgcgac cagtgccagc accgcggcaa ccagccgtaa
       61 ccacagcggc gtcccggccc agacccgccg gatgggcaag cctcgtcgaa gcgcccagtg
      121 tcgtcgaagg tcccagcgcc ggcgcatggc ccggccggcg gcccgtatcc ggccagtggt
      181 cgggcctgcc gcggtcatgt tcggggtacg cgcagcacgt agccgacgcc gcgcacggtg
      241 tgcagcaacc gcggctcgcc ggtatcgagc ttgcgccgca ggtaggaaat gtaggactcg
      301 atcacgccgg tgtcaccgtt gaagtcgtag ttccacacgt gctcgaggat ctgggtcttc
      361 gatagcaccc gcccggggtt gcgcatgaag tagtgcagca gcttgaactc ggttggtgac
      421 agctcgacca gctcgcccgc cttgcgcacc tcgtgggtgt cgtcgtcgag ttcgatgtcg
      481 gcgaaacaca gctgggcgct ggccgcttcc gttacggcgc cggcccgccg caggatggcc
      541 cggatccggg cgatcacctc ttcgaggctg aacggcttgg tcacgtaatc gtccccgccc
      601 agcgtcaggc cggtaatccg atcagcagtg gcgtcgcgcg cggtgaggaa cagcaccggc
      661 atctgcaggc cctcgccgcg cagccggcgc accatgtcga agccgtccag gccaggcatc
      721 atcacgtcga gtacgagcag gtcggggcgg ctgcgcctgg cttgctgcat cgcctcgacc
      781 ccgtcggtcg cagtcgtcac ctcgaagccg acgaaacgca ggcttgcgga gagcaactcg
      841 acgatgttgg gctcgtcgtc gacgacgagc agccgagcct cggggctggt tgtggtcacg
      901 gcacaccacc tcctgggtac cagtctgggc ggcgagcctc tcacgcccct gggcatcgcc
      961 tgtgaactac ctgggaatac cgacttccct cgctgggcat ccgatcattc ccagccaact
     1021 ccaagcaacc tgacagccca cctccaatct ggtccgcgac ggtagcgcct gtgcccagcc
     1081 gtcccattgc cgagctcgac agcaaagccg tcatatcccc tcccggcggc tctgccgttg
     1141 agttcggcgg gctgggcaca tccggatccg gatcacctga gggagaacac tgatgaacga
     1201 gacgccgcag ccctatgacc ccactgcgat gatccccgaa cacaccggcc cggccggccg
     1261 gccgcctcga ggagcgtggc taagccggct cgcgaccccg atggtcgccg gtggcgtggc
     1321 cctgctactc gccggcgttg cgggcgggta cctgctgggc agtcgggggc ccggaacagc
     1381 cccgaccaac gtggtgagtc ccgcggccga ggggtcgttc gacccgtact ccggctccac
     1441 ccgctgcggt ccttgcggcc ccagaggctt cggccatggc ggccggggcg cggttggcac
     1501 catcgactcg gtcaacggga cgacgatcat gctgaccacc cgcaacggcc ggaaggtcag
     1561 cgtcaccgct cctggcaccg tggccgtcac cctgcgcact ccgggctcgg tggctgacct
     1621 caagcccggt cagagcgtcg tcgtgtccgg tcagcggggt accgacggca gcatcaccgc
     1681 caaccgcatc gacgtcggcg ctccgaggtg agtactaccg tcaccgccga gcaccgctcc
     1741 gggcccgatc ctgacccgtt acgcaccgcc ctgatcgaaa tcgtcatccc ggtgcacaat
     1801 gaggagcggg agctggccgg ttgcgtgcag gtattgcaca cctacctgca cgaacacctc
     1861 cccttcccgg cgacgatcac catcgcggac aacgcgagca ccgatacgac accgcaggtg
     1921 gcccgggcac tggccgaggc gctgcccgat gtgcgggtgc tgcggttgga aggcaagggc
     1981 cgcggtcgtg cgttacgggc cgcgtggtcg gccagcgacg ccgacgtggt ggcctacctg
     2041 gacgtcgatc tgtccactgg gcttgacgcg ttgctgcctc tggtggcgcc gctggtcaac
     2101 gggcactccg acctggccat cggcagccgc ctggcgcccg gtgcgcgcac cgtgcgcggt
     2161 gccaagcggg agttgatctc ccgcggctat aacgcgctgg tccagctcct gcactgcgcc
     2221 tcgttctccg acgcgcagtg cggcttcaaa gccgcccgca ccgagatgat ccgcccgctg
     2281 cttgccgtga ccaccgacga cggctggttc ttcgacactg agttgttgct gctggccgag
     2341 cacaacgggc tgcgcatcca cgaggtaccg gtcgactggg tggaggacct cgattcacgg
     2401 gtcgcgctgg ccgccaccgc ctgggaggac ctgtgcggac tgctgcgggt cgctcgggcc
     2461 aaagctcgcg gaaccgccat tgtcaccggg ctcccccagc ggcctgcgcc gtgcgcggca
     2521 caccccaatg cggtgctcgc gccgcgccgc agcacccgag cgacctggca gaccatcgcc
     2581 ttcgcggtga tcgggctgct ctccacgctg gccacggtgg ccctctacgc gttgggtcgc
     2641 gagtggtggt ctccgcttgg agccaacctg gtcgcgctga ccctcaccac tgtgttcaac
     2701 accgaggcca accgccggtt cacctttact ggcaccgggc gcagcctggt acgggtgcac
     2761 acgcaggcgg cgctggtctt cctcggttac tacgccctga cttctgtcgc cctgctcgcg
     2821 gtgggttcct tggtacgcca gccgtcacgg gcgctggagg tcggggtgct gctgggcgcc
     2881 tcggtgctcg gcaccattgg ccggttcctg ttgctgcgcg gctgggtgtt cgccgctcgc
     2941 tcaccccaca aggacatgtg atgaccgccg cgaccctcgc cccaccggcc gtacctgcgc
     3001 ccaccgctcc gcggcgcgac ccgcggtggg cacgcccggc tctggccggg ctgctcggag
     3061 ttaccgcgct gctctacgtg tggggtctgg gtgcgtccgg ttacggcaac acgttctact
     3121 ccgcggctgt gcaggccggc gcgacgagct ggaaggcatt tcttttcggc tcctccgacg
     3181 cggctaactc gatcatggtg gacaagccgc cggcatcgtt gtgggtcgcc gagctggcgg
     3241 tccggatttt cgggctgagc ccgtggagcg tcctcgtccc gcaggcgctg gaaggcgtcg
     3301 ccgcggtcgg cgtgctctac gccgcggtgc gtcgctggca tggtccggcc gctgggttgc
     3361 tggccggcgc ggtgctcgcg ctcaccccgg tcgccgtgct gatgttccgg ttcaacaatc
     3421 ccgacgcgct gctcgtgctg ttactcgtcc tgggcggcta cgcgctggtc cgtgcgttgg
     3481 aggccggccg aaccggttgg ttggttgcgg cggcggtgtt catcgggttc gggttcctga
     3541 ccaagatgat gcaggcattc c
//
LOCUS       DASVXZ010000154         3873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1263491, whole genome shotgun sequence.
ACCESSION   DASVXZ010000154 DASVXZ010000000
VERSION     DASVXZ010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1263491"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VF788_03060"
     CDS             <1..227
                     /locus_tag="VF788_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933173.1"
                     /translation="MCSQPSMSIRGLCPGTRRNYARSVRAFLQAVSTTVQWGSRDPVV
                     PNRSSMSCNLGVFVDQSAEPVAASEVEVGR"
     gene            complement(327..539)
                     /locus_tag="VF788_03065"
                     /pseudo
     CDS             complement(327..539)
                     /locus_tag="VF788_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
     gene            complement(556..1629)
                     /locus_tag="VF788_03070"
     CDS             complement(556..1629)
                     /locus_tag="VF788_03070"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8933174.1"
                     /translation="MTSIPHSGPQRIVVGVDTHQYARVVVALDQLGARLGEITIAVDR
                     AGYEQLQRWAAQHGETIRFGVEGCGSYGAGLASFLRRRGYPVVEVNRPDRRIRHLHGQ
                     NDPLDAESAARAVLAGTATAVPKSADGAVEMIRQVKIAKDTAVTARSQAIITLKTIVV
                     TAPADLREHLDPLGDTQLIEVCRQLSYDSMTGPADAARYTLRALAERYHELDREARLH
                     DRVLQTLTQRAVPELTSSFGIGADSAAELLLVVGDNPARLRSDGALAKLAGACPIPAS
                     SGKTTRHRLNRGGHRQANAALHRILIARMRFHQPTIDYVTRRTTEGKTKREIMRCLKR
                     LLVREVYQILVASHKTKDEHLAA"
     gene            1955..2416
                     /locus_tag="VF788_03075"
     CDS             1955..2416
                     /locus_tag="VF788_03075"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8933175.1"
                     /translation="MILIGIDPHKSSHTAVAVDAAGQQLAQRRFVVNAGTFRQLMRWC
                     QQWPERRFAVEGAGGLGRRLAQQLAAAGENVVDVPATVAARARLLATGARPQDRRRRR
                     PACRPRCPVPPGPAPSDARRPDHDPATGDRAARRPGPRTHPRAQPAARPPA"
     gene            complement(2566..3345)
                     /locus_tag="VF788_03080"
     CDS             complement(2566..3345)
                     /locus_tag="VF788_03080"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEX8933176.1"
                     /translation="MNSGDDTDTEVDVAVACRVLGVSRSGYYAWLGRPPSARDEVNTL
                     LLKHIQEVHEESRKTYGWPRIHAELTLGRGWAVTHKRVARLLREAGIQGLYRRRYRRD
                     PTGPATEDDLVKRNFTAAGVDRLWLTDITEHPTNEGKLYCGAVMDAYSRRIIGWSIAH
                     HMRTELVIDALGMATLRRQPDNGSAILHSDHGTQYTSWAFGQRLHAAGLLPSMGTVGD
                     CYDCETVLRHPSRPARCLGLAGSSAWWRSRRGRRASGPGCR"
     gene            complement(3361..3651)
                     /locus_tag="VF788_03085"
     CDS             complement(3361..3651)
                     /locus_tag="VF788_03085"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8933177.1"
                     /translation="MPAPHPPEFRRRAVELARLGEQPIAALAKQLSISESCLRNWMIQ
                     DDADEKGSDTRLTSTEKRELAQLRRDKRRLEMENEILTRAAAYFARENVLPN"
BASE COUNT          574 a         1241 c         1363 g          695 t
ORIGIN      
        1 ggatgtgctc gcaaccttcg atgagcatcc gcggcctatg cccggggacg cggcgcaact
       61 acgccaggtc cgtgcgggcg tttctgcagg cggtgtcgac gacggtccag tggggttcgc
      121 gagatcctgt ggtgccgaac aggtcatcca tgtcatgcaa cctgggcgta ttcgtggatc
      181 agtccgccga gccggtcgcg gcgtcggagg tggaggtcgg gcggtgaggc gggctggggg
      241 agtggtctga gtggtgctgc ttggtgcagt gcgcggtggg ggtgatgtga gcttgtcccc
      301 gtagcacgga cacccacggt gtggggtcag tgatcatcct gtgtggacgt gtggggtggt
      361 gtgacggctt cgaactcaac cggactgagc attccgaggc tggaatgccg ccgtttcgga
      421 ttgtaccagc attctatcca ccagaagatg gcgttggcaa gctcgtctcg cgtctgccat
      481 tctcgggtgt cgagaagctc cagttgcatg gtaccccaga aggattccat catggcattg
      541 atgctcctat gattgtcaag cggcaaggtg ctcatctttg gtcttgtgcg aagcgacgag
      601 tatctgatag acttctcgaa cgaggagccg tttcaaacaa cgcatgatct cgcgtttagt
      661 cttgccttca gtggtgcggc gggtgacgta gtcaatagta ggctgatgaa aacgcatccg
      721 ggcgatgaga atgcggtgca gcgcggcgtt ggcctggcgg tgaccgccac ggttgagccg
      781 gtggcgggtg gttttcccgg acgaggcggg gatgggacac gcgccggcca gcttggccag
      841 cgcgccgtcg ctgcggaggc gtgcggggtt gtcccccacg acgaggagca gttcggcggc
      901 ggagtccgcg ccgatgccga agctgctggt cagctcgggt acggcgcgct gggtgagggt
      961 ctgcaggacc cggtcgtgca ggcgggcctc gcggtcaagc tcgtggtagc gctcggccag
     1021 tgcacgcagg gtatagcggg ccgcgtcggc tggtccggtc atcgagtcat agctgagctg
     1081 ccggcacacc tcgatcagct gggtatcacc gagcgggtcg aggtgttcgc gcaggtctgc
     1141 cggtgcggtg accacgatgg ttttcagggt gatgatggcc tggctgcgtg ctgtgacggc
     1201 ggtgtctttg gcgatcttga cttggcggat catctccacc gcgccgtcgg cggacttggg
     1261 caccgcggtc gcggtgccgg ccagcaccgc ccgcgccgcc gactccgcgt caagcgggtc
     1321 gttctggccg tgcaggtgcc ggatccggcg gtccgggcgg ttgacctcca ccaccggata
     1381 cccccggcgg cgcaggaacg aggccagccc ggcaccgtag gagccgcagc cctcgacgcc
     1441 gaagcggatc gtctcgccgt gctgggcagc ccagcgttgc agctgctcat acccggcccg
     1501 gtccaccgcg atcgtgatct cgccgagccg ggctccgagc tggtctaggg ccaccacgac
     1561 gcgggcgtac tggtgggtgt cgaccccgac gacgatgcgc tgcggaccag aatgcgggat
     1621 gctcgtcatg actgcgtgtc cttcccgaac gtgcgtggtc gcgacgcggc cgggcgggtg
     1681 gacaggactg tgacgagacc tgctgcgatc aggctcctga cttgtttaat cgaggcggac
     1741 gctatggtct gcagccgtag cgttcagggt gccggtcggc acgggtccgc agtgctcctt
     1801 gccgccccgg gcgggctggc tcactcatag cgcgccgccg ccgaccggcg cccgcgcggt
     1861 gtggctcgac agaggcatga cgtggctgaa acttcaagtc agggtgccca ccgcgcgttg
     1921 ccccccgtcc cgttgagtgc aaggccggct gcccatgatc ctgatcggta tcgacccgca
     1981 caagtcctcc cacaccgccg tcgccgtcga cgctgcaggc cagcaactgg cccagcgccg
     2041 gttcgtcgtc aacgcgggaa ccttccgcca gctgatgcgc tggtgccagc agtggcccga
     2101 gcgccgtttc gccgtcgaag gcgccggtgg cctcggtcgt cggcttgccc agcagctggc
     2161 cgccgcaggt gagaacgtcg tcgacgtgcc cgccaccgtg gcggcccggg cccggctgct
     2221 ggccaccggc gcaagaccgc aagaccgacg ccgcagacgc cctgcatgtc gcccacgttg
     2281 ccctgttccg cccggacctg cgcccagtga cgccagaaga ccagaccacg atcctgcgac
     2341 tggtgaccga gcggcacgac gacctggtcc acgaacgcac ccgcgtgctc aaccggctgc
     2401 acgccctcct gcgtgacctg ctgcccgggg gtgtgcccac cggcctgtcg gccaccaaag
     2461 ctgccaccgc gatcaagacg gtccggcccg tgacggcgac cgactgctgc cgccgcgacc
     2521 tcgcccgcga cctgctagcc gacctgcgcc gcctggaccg gctggtcacc gacaaccagg
     2581 cccagatgcg cgacgccctc gccgcgaccg ccaccacgct gacgaccctg ccaggcctag
     2641 gcaccgtgct ggccggctcg ggtgacgaag gacagtctca cagtcgtaac aatccccgac
     2701 cgtgcccatc gacgggagca gtccggcggc gtggagccgt tgcccgaacg cccaggacgt
     2761 gtattgtgtg ccgtggtcgc tgtgcaggat cgcggaacca ttgtcgggtt gtcggcgaag
     2821 ggtggccatc ccgagcgcgt cgatgacgag ttcggtgcgc atatggtgcg cgatcgacca
     2881 tccgatgatg cgtcgtgaat aggcgtccat gaccgccccg cagtacagtt tcccttcatt
     2941 ggtggggtgt tcggtgatgt cggtcagcca gagccggtcg acgccggccg cggtgaagtt
     3001 gcgcttcacc aggtcgtcct cggtggccgg cccggtcggg tcgcggcggt atcgtcgccg
     3061 gtacaggccc tggatccccg cctcgcgcag gagccgggcg acccgcttgt gggtgacggc
     3121 ccagccccgg cccagcgtga gttcggcgtg gatccggggc cagccgtagg ttttccggga
     3181 ttcttcgtgg acctcctgaa tgtgtttgag cagcaacgtg ttcacctcat cccgggccga
     3241 gggcggccgc ccgagccacg cgtagtagcc cgacctcgac acccccagga ctcggcaggc
     3301 caccgcgaca tcgacctcgg tatcggtgtc atcgcccgag ttcacggacc aaccggtaca
     3361 ctaatttggg aggacgttct cccgggcgaa gtacgcggcg gcccgtgtca ggatctcatt
     3421 ttccatctcc aggcgccgct tgtcccggcg caactgggcc agctcacgct tctcggtgct
     3481 cgtcagccgt gtatcgctgc ctttctcgtc cgcgtcgtcc tggatcatcc agtttctcaa
     3541 acaggattcg ctgatcgaga gttgtttggc caacgcagcg atcggttgct cgcccagacg
     3601 ggccagctcg accgctcgac gacggaactc aggagggtga ggtgcgggca cgttgacatc
     3661 cttcctggtg gccgcagcca cctcaggttg ggtgtccgtg ctagggggac aagctcagag
     3721 gatgatgtgc gcggcgtcga cgacggggtc ggtgtgcatg aggtcgaaca cggctagggc
     3781 gtgggcgagg tagtagtgcc caagccgcgc ggcagcgtgg agcgtgtcgg tgctgatggg
     3841 ctggtcgtag ccgtcgcgca ggtgggtggc cag
//
LOCUS       DASVXZ010000155         6656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_823847, whole genome shotgun sequence.
ACCESSION   DASVXZ010000155 DASVXZ010000000
VERSION     DASVXZ010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6656
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823847"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VF788_03090"
     CDS             <1..725
                     /locus_tag="VF788_03090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933178.1"
                     /translation="FVPLLVLFAAVLAAVGIVSVALVAVLMVLVPFLLTGVGVAVVVR
                     HLSRRHRRAVRAQQPAPMPARAPSVARSQAVPDWHATQARFAQLRGEYGRFECDPLAV
                     LRLPALADVTVPATSRFVDAFAEAQALDTDTEPPPAHRARYATAVDQAWRAWQAARDA
                     AERIRLAGITEQEQAIVQRAIKLLTMARDSDHDAERVAAYAKARAELAKLDRSGTLRL
                     PPAAAAALDAAARGQLPPATAR"
     gene            complement(772..2955)
                     /gene="recG"
                     /locus_tag="VF788_03095"
     CDS             complement(772..2955)
                     /gene="recG"
                     /locus_tag="VF788_03095"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEX8933179.1"
                     /translation="MASMDDALDRLIDAKTVALLAEQVDVHTVGELLRHYPRRYADQG
                     QLTPIAHLEPGEDVTVVAEIRKYSSRQMQTKKGTIQNAVIWDGSRELNLTFFNQHRVL
                     PRIFTRGRRALFAGRVTTYGKKRELQLTHPRYQLLDEDAEALAEFSRALIPVYPATKE
                     LTSWTIQLCVRQVFDLLDDPEDPLPAELRARHRLPALGAALRAVHRSDDRAEIGTAQR
                     RLKWDEAMAVQLTLARRRQEAVQRPAPACPHRDGGLAAAFDAALPFVLTAGQQQIGAL
                     LASELASAHPMNRLLQGEVGSGKTVVALRAMLQVVDAGRQAVLLAPTEVLAAQHARSL
                     REMLGPHGCGGELGSAEHATRIALLTGSLPARARKQALLDAASGVAGIVVGTHAVIQD
                     RVSFAELGLVVVDEQHRFGVEQRDALRARAIDGTSPHVLVMTATPIPRTVAMTVYGDL
                     EVSALRELPRGRSPISTTVVPVGEKPSWLDRVWGRIIEEVSAGRQAYVVCPRIGGADA
                     AGEDAAEGGVGDEDARPPLAVLELTPQLAEGPLAQARLGILHGRLPGEEKDAVMRAFA
                     AGEIDVLVATTVVEVGVDVPNATVMVIMDAQRFGISQLHQLRGRVGRGSHPGLCLLVT
                     DSPEGTTARERLDAVAATTDGFELARLDLELRREGDVLGSVQSGRRSALRLLSLLRDE
                     DLIGQARDAAQQLIHADPQLTEHPELARLAADLLDEQRAEFLDKV"
     gene            complement(2959..4611)
                     /locus_tag="VF788_03100"
     CDS             complement(2959..4611)
                     /locus_tag="VF788_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010305744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004371 - glycerone kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEX8933180.1"
                     /translation="MLQSLDGAAVRRWAATCCDVLAAHRDEIDALNVFPVPDQDTGSN
                     LLATMRAGLDAVLRRDRHEDPGVLPGSTAAVLARGALLGARGNSGVILSQVLRGLAEP
                     LIDGGVGAGAPSWDGAALREGLRRADELALAAVSDPAPGTVLTVLHAAAQAAAAVRSD
                     ELGEVASAATAAAAGALADTPRQLAALAAAGVVDAGGRGLILLLEALLAVVTERSGSW
                     SAAATKIHPPPAFARHGGSPNYEYEVMYLLGNTDEASVGVLRVELATLGDCVAIVGTG
                     KAGDGQAAGLWNVHVHCSDAGAAIEAGMRAGRPHRINVTRFADHIHGERAGDVAHDHF
                     ATSHAVLVMVTGSGVAALCRGEGVATAPATTSVADLGVILGATRSRHVTVLAEPSAAR
                     TAEIAAVQARVTGHEVVVLPVGSPVQALGAVAVHDSARRPAEDLVTMADAVAGMRCGE
                     LTVVRAEARTTAGYCKVGEVLGILADQVVLINDDPLAAACELMARMLAMGGELGTVLL
                     GEDAPDGFGDALMGKLHAAHPGVEMVVYVGDVPGRVLVAGVE"
     gene            4776..4967
                     /gene="rpmB"
                     /locus_tag="VF788_03105"
     CDS             4776..4967
                     /gene="rpmB"
                     /locus_tag="VF788_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEX8933181.1"
                     /translation="MAAVCDVCGKGPGFGMSVSHSHRRTHRRWNPNIQTVRAEVSPGQ
                     RRRLNVCTSCLKAGKVARA"
     gene            complement(5021..5698)
                     /locus_tag="VF788_03110"
     CDS             complement(5021..5698)
                     /locus_tag="VF788_03110"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEX8933182.1"
                     /translation="MPAAVAEIVETGWAAALAPVGGRISAAGEFLRAEISAGRRYLPS
                     GPNILRAFMQPFDQVRVLIVGQDPYPTPGHAVGLSFSVEPDVQPVPRSLANIFREYRD
                     DLGLPTPSNGDLSPWAARGVLLLNRVLTVEPGRPGSHRGKGWEEVTEQAIRALVARPA
                     QPMVAILWGRDARTLRPMLADIPCIESAHPSPMSADRGFFGSRPFTRANTMLADLGAD
                     PIDWTLP"
     gene            complement(5734..>6656)
                     /locus_tag="VF788_03115"
     CDS             complement(5734..>6656)
                     /locus_tag="VF788_03115"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEX8933183.1"
                     /translation="EFRLIARVTAGRSLPPGTLLGPGDDAAVLAAGDSRVVVTTDVLV
                     EGVHFRLDWSTPHQVGRKAVAASLADVAAMGAVPTALVVGLAVPGQTPVSTVDGLAAG
                     MWEEAGQVGAGIVGGDVVSCAEIVVSVTALGDLEGRAPVTRAGARAGNVLGLCGRLGW
                     SAAGLAVLRRGFRSPLAVVGAHRVPEPPYTAGPQAAAAGATAMIDISDGLLADAWHLA
                     KASGVGIDIDSAAVPVASRLVEVAAALGADAQHWVLTGGEDHALLACFPTEAALPSGW
                     IKLGVVKEGLGVTIDRRTYEGPAGWAHFES"
BASE COUNT         1079 a         2458 c         2129 g          990 t
ORIGIN      
        1 cgttcgttcc cctactggtc ctgttcgctg cggttctggc cgcggtgggg attgtcagtg
       61 tggctctggt cgccgtgctc atggtgctcg tgccgttcct gctgaccgga gtgggcgtgg
      121 cggtcgtggt gcggcacttg agccgccgcc atcgccgagc ggtgcgcgcc cagcaaccag
      181 cgccgatgcc cgcgagggcc ccatctgttg cccgcagtca ggcggtgccg gactggcacg
      241 ctacccaggc caggttcgcc caactgcgcg gtgagtacgg ccgattcgaa tgcgacccgc
      301 tcgcggtgct gcggctcccg gcgttagccg acgtcacggt gcccgccacc agccgcttcg
      361 ttgacgcctt cgccgaggct caggcactgg acacggacac cgaaccgccc ccggcccacc
      421 gcgctcgcta cgccaccgca gtggatcagg cctggcgggc ctggcaggcc gcccgcgacg
      481 cagcggaacg catccggctc gctggcatca cggaacagga gcaggccatc gtgcagcgag
      541 cgatcaagct gctcaccatg gcccgggact ccgaccacga tgccgagcgc gtagccgcgt
      601 acgccaaagc ccgcgcggaa ctggcaaaat tggaccgcag cggaaccctg cgcctgcctc
      661 ctgccgcagc cgccgcactg gatgccgctg ctcgcggcca actaccaccg gcgaccgccc
      721 gctgacgcac gcaaccatgg ccgctgcgca ggtgggagac ctatccagtc gtcacacttt
      781 gtccaggaat tcggcacgct gctcgtcgag cagatccgcg gccagcctgg ccagctctgg
      841 atgctcggtg agctgtggat ccgcgtgaat cagctgctgg gcggcgtccc gcgcctggcc
      901 gatcaggtct tcgtcgcgga gcaatgacag caacctgagc gcggatcggc ggccggactg
      961 caccgagccc agcacatcac cttcgcggcg cagctccagg tccaggcgag ccaactcaaa
     1021 cccgtcggtg gtggcagcga ccgcgtcgag ccgctcccgg gcggtggtgc cttccgggga
     1081 gtcggtcacc agcaggcaca gtccgggatg cgaaccacgg ccgacccgac ctcggagctg
     1141 gtgcagctgg ctgatcccga accgctgcgc gtccatgatc accatgacgg tggcgttggg
     1201 cacatccacc ccgacctcga cgacggtggt agctaccagt acatcgatct caccagcagc
     1261 gaaggcgcgc atcacggcgt ccttctcctc gcctggcaag cggccgtgca atatccccaa
     1321 ccgcgcctgg gccaggggac cctccgcgag ttgcggagtc agttcgagga ccgccagggg
     1381 cgggcgagcg tcctcgtcgc cgacgccccc ttcggccgcg tcctccccag cagcatccgc
     1441 acccccgatc cgagggcaca ccacataggc ttgtcgaccg gcgctgacct cctcgatgat
     1501 ccgcccccac acccgatcga gccagctagg tttctcccca accgggacca cggtggtcga
     1561 gatgggcgac cgaccgcgag gcagctcgcg gagcgcggag acctccagat cgccataaac
     1621 ggtcatcgcg acggtgcgcg ggatcggcgt cgccgtcatc accagcacgt gggggctcgt
     1681 gccgtcgatg gccctggcac gcagtgcatc gcgctgctcg acgccgaagc ggtgctgctc
     1741 atcaaccacc accaggccca gctcggcgaa ggacacccgg tcctggatca cagcatgcgt
     1801 gcccaccacg atcccggcca ccccgctggc ggcatccagc agcgcctgct ttcgagcccg
     1861 ggccggcagc gacccggtga gcagggcgat ccgggtggcg tgctcggctg atcccaactc
     1921 gcccccgcaa ccgtgcggac ccagcatctc ccgcagggac cgggcatgct gcgcggcgag
     1981 cacctcggtg ggcgccaaca gcacggcttg ccgtcccgcg tcgacgacct gcagcatcgc
     2041 gcgcagtgcc accacggtct tcccggatcc gacctcgcct tgcagcaacc ggttcatcgg
     2101 atgcgcactg gccagctcac tcgccagcag cgcacctatc tgctgctgac cggcggttaa
     2161 tacgaatggc agcgcagcgt cgaacgcggc ggccagcccg ccgtcccggt gcgggcaggc
     2221 cggggcaggg cgctgcaccg cttcctggcg acgtcgggcg agggtgagct gcaccgccat
     2281 cgcctcgtcc cacttcagcc gccgctgcgc ggtcccgatc tcggcgcggt catcggagcg
     2341 gtgcaccgcc cgcaacgcag cacccaacgc cggtaaccgg tgccgggccc gaagttcggc
     2401 cggcagcggg tcttccggat cgtccagcag gtcgaaaacc tgccgtacgc atagctggat
     2461 cgtccaggac gtcagttcct tggtggcggg atagaccggg atcaacgctc gggagaactc
     2521 cgcgagcgcc tcagcatcct cgtcgagcag ctggtatctc ggatgggtga gttgcaattc
     2581 gcgtttcttg ccgtaggtcg tcacccggcc cgcgaacaac gcccgacgcc cgcgggtgaa
     2641 aatccggggc agcacccggt gctgattgaa gaaggtgagg ttcagctcgc gggagccgtc
     2701 ccagatcacc gcgttctgga tggtgccctt tttcgtctgc atctgccggg aactgtattt
     2761 gcggatctcg gcgactaccg tgacgtcttc tcccggctcg agatgcgcga tcggcgtgag
     2821 ctgaccctgg tcggcgtagc ggcgcgggta gtgccgcagc agctccccta cggtgtgcac
     2881 gtccacttgc tcggcaagca gtgccacggt tttcgcgtca atcagccggt cgagggcatc
     2941 gtccatgctg gccactgctc actccactcc tgctactagc acgcgccccg gcacatcacc
     3001 gacgtagacc accatctcga cacccggatg cgctgcgtgc agctttccca tcagcgcatc
     3061 gccgaagccg tccggcgcgt cctcgccgag caacaccgtc cccagctccc ctcccatcgc
     3121 cagcattcgc gccatcagct cgcaagcggc ggccagcgga tcatcgttga tcaagacgac
     3181 ctggtcggca agtatgccga ggacctcgcc gaccttgcag tacccggctg tggtccgtgc
     3241 ctccgctcgg accacggtca gctccccgca tcgcatcccg gcgacggcat cggccatggt
     3301 taccaggtcc tcagccggcc gccgcgcgga gtcgtgcacc gcgactgcac ccagtgcctg
     3361 cacgggggaa ccaaccggga gcaccaccac ctcatgaccg gtgacccggg cctgcaccgc
     3421 cgcgatctcc gctgtgcggg cggcactcgg ctcggcaagc acggtgacgt gccggctccg
     3481 cgtggcacca agaatcacgc caaggtcggc aacgctggtg gtcgcgggcg cggtagccac
     3541 tccttcgccg cggcagagtg cagccacccc agatcccgtg accatgacga gtactgcgtg
     3601 actcgtggcg aagtggtcat gggcaacgtc gccagcgcgc tcaccatgga tgtggtcggc
     3661 aaaacgcgtg acgttgatgc gatgcggccg cccagcccgc attcccgctt cgatcgcggc
     3721 gccggcgtcg gagcagtgca cgtggacgtt ccacaatccc gcagcctgcc cgtccccggc
     3781 cttgccggtc ccgacgatcg ccacgcagtc gcccagcgtc gccagttcga cgcgcaagac
     3841 gccgacgctg gcctcgtcgg tgttccccag gaggtacatc acttcgtact cgtagttcgg
     3901 ggaaccgcca tgccgtgcaa aggccggggg cgggtggatt ttggtcgcgg cagccgacca
     3961 gctaccggaa cgctcggtta ccactgccag cagcgcctca agcagcagga tcaacccgcg
     4021 gcctcccgcg tccaccactc cggcagcggc cagcgcagcg agttgccggg gtgtgtcagc
     4081 cagcgcaccg gccgcggcgg cggtggccgc ggacgccacc tccccgagtt cgtccgagcg
     4141 cactgccgcc gcggcctgcg ccgccgcgtg cagcaccgtc agcacggtgc cgggtgcggg
     4201 gtctgatact gccgccaatg ccagctcgtc agcccggcga agcccctccc gcaacgccgc
     4261 accgtcccag cttggggcac cggcgcccac accaccatcg atgagaggct ccgccagccc
     4321 acgaagtacc tgggacagaa tcacccccga gttgcctcgc gctcccagca acgcgccgcg
     4381 ggctagaacc gcggccgtgc tgcccgggag gacgccgggg tcctcatggc gatcccgccg
     4441 gagcaccgca tccaacccgg ctctcatggt ggccaacagg ttcgagccgg tgtcctggtc
     4501 cgggaccggg aacacattga gcgcgtcgat ctcgtcacgg tgcgccgcca gcacgtcaca
     4561 gcaggtggcc gcccaacgac ggaccgccgc cccgtccagc gactgcaaca ccgcggcttc
     4621 tcaccgcctt catcggggct ttgccgaaga ttaccgcccg cttcaactcg gtcgtacagt
     4681 taacccggtg catatcctcg tgcgccccgg ggttaccctt atcgagccgc ccgggatcgg
     4741 gcgtgccacc ctcgcgacga accagggagt gtgacgtggc tgccgtgtgc gatgtctgcg
     4801 gtaagggacc aggcttcggc atgtcggtct cgcactcgca ccggcggacc catcgccggt
     4861 ggaacccgaa catccagacc gtccgggcag aggtcagccc tggtcagcgc cgccgtctga
     4921 acgtctgcac ctcgtgcctc aaggcaggca aggtcgcccg cgcctgaccg cccggtcttc
     4981 tgagcgtcat tcagctccgg atggcagctg gttgcgttgg ctagggcagg gtccagtcga
     5041 tcgggtcggc tcccagatcg gcgagcatgg tgttggcgcg ggtgaacggg cgggaaccga
     5101 agaatccgcg atcagccgac atcggtgacg ggtgtgcgga ctcgatacat gggatgtccg
     5161 ccagcatggg acgcagtgtt cgagcgtccc ggccccacaa gatagccacc atcggttgcg
     5221 cgggacgcgc taccagcgct cgaatggcct gctcggtgac ctcttcccag cccttgcccc
     5281 ggtgcgaacc cgggcgtccg ggctccaccg tgagcaccct gttgagcaac aacaccccac
     5341 gggcagccca tgggctgagg tccccgttgg acggggttgg cagcccgagg tcgtcgcggt
     5401 actcccggaa gatgttggcg agactacgcg gcactggctg aacatccggc tcgaccgaaa
     5461 acgacaaccc caccgcatga cccggcgtgg ggtagggatc ctggccgacg atgagcaccc
     5521 gcacctggtc gaagggctgc atgaaggctc gcaggatgtt gggaccggag ggcagatagc
     5581 gccgtcccgc gctgatctcg gcccggagga actcaccggc agcgctgatc cggccaccca
     5641 cgggggccag ggcagctgcc cagccggtct ccacgatttc cgctacagct gctggcaccg
     5701 ggtcagccta gtggctgccc tggtgccacc cactcacgac tcgaagtgcg cccaccctgc
     5761 cgggccttcg taggttctcc tgtcgatcgt cacgccgagg ccctccttca ccacaccaag
     5821 cttgatccac cccgagggca gcgcagcttc agtggggaaa cacgccagca gcgcgtggtc
     5881 ctcccctccg gtgagaaccc agtgctgcgc gtcggcgccc aacgcggctg ccacctcgac
     5941 caacctgctg gccactggca ccgctgcgga gtcgatatcg atgcccacgc cggatgcctt
     6001 ggcaaggtgc caagcgtcag cgagcaggcc atcggagatg tcaatcatgg cggtggcgcc
     6061 ggctgccgcg gcctgcggac cggcggtgta cggaggttcc ggcactcggt gggcacccac
     6121 caccgccaat ggagatcgaa acccccggcg aagaacggca aggccggccg cggaccagcc
     6181 caatctgccg cacagaccga gcacattccc ggctcgggcc ccagccctgg tgaccggtgc
     6241 ccggccctcc agatcaccta aagcggtcac cgacaccacg atctcagcgc agctgaccac
     6301 atcgccgcca acgatgccgg caccgacctg cccggcctcc tcccacatgc cggcagccaa
     6361 cccgtccacg gtggacacgg gtgtctgccc cggaacggcc agcccgacga cgagcgcggt
     6421 gggcaccgca cccatggccg ccacatcggc caggctggcc gccaccgctt tgcgtcccac
     6481 ctggtgcggg gtggaccaat cgagccggaa gtgcactccc tcgacgagga cgtcagttgt
     6541 caccacgact cggctatccc cagcagccag caccgcagcg tcgtcccccg ggccgagcag
     6601 ggtgccaggc ggcagcgacc gacccgcggt gacccgcgcg atcagcctga attctc
//
LOCUS       DASVXZ010000156         4618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_285867, whole genome shotgun sequence.
ACCESSION   DASVXZ010000156 DASVXZ010000000
VERSION     DASVXZ010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285867"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VF788_03120"
     CDS             complement(<1..835)
                     /locus_tag="VF788_03120"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX8933184.1"
                     /translation="MIGALIVVIDHSAPLTDSSRLTVFPNSWNLSPGYIALMGFFAMS
                     GYQISDSWRQDPSWLRFSAKRVLRLWPPLLVVVLLTALVIGPLVSTLDPAEYFSARGT
                     WGYIIHNAGLYTLQHRLPGVFDHNPWPWSANGAIWTLPMELTGYLLVLGFGVAGLFRR
                     APWLTVVLMLGLIGLDRRFDASIGNPGHGGSFLQVPIGSLVSFLVAFSIGMVLHAYRG
                     KIPLSPLVAWLLVGLQIAVHTTKAGAVTLPFMAGYGALVLAFHWPAPLEGYESWVFGS
                     YG"
     gene            1043..2077
                     /locus_tag="VF788_03125"
     CDS             1043..2077
                     /locus_tag="VF788_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933185.1"
                     /translation="MKPNESPTDSAPEAASPFPPAFRWEAAQQEAPTQVMGAVGRDVR
                     SRPDYQQRPGEAGDLFQPVGALAGEPIGHPGGGSAPPWGGSDLPPIAEQPVAEAPIAE
                     QQSAWLRQGPEVFQAPAMQPRSKQVVGIAVLCGVLLGLLGATVAYFLTAHSADRTGLD
                     QAAGAQPTAAARALADPPAPLAAPVDTEHALIDPPGQSRGGGGLFDLPKLKSTGLLRP
                     EIQNALQTGGMTDGVLKTTTVGANTIGMFALTMPDQQAATTVAQEIATVQLDGGLKAD
                     NNRALRGVAVMGSVPGSQPTAYRAVYVLYNRAIFFEVFGPNRDAVLATFDFVTNQQVT
                     YAPPTVRVGR"
     gene            complement(2074..>4618)
                     /locus_tag="VF788_03130"
     CDS             complement(2074..>4618)
                     /locus_tag="VF788_03130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8933186.1"
                     /translation="AGQGIALSLRRAPEGGWRVAPELVHTYLLGVASDMALPELPQLD
                     VLVDPDLTLVRDAHRALAQQRHQAGELSAELAEQRQYAARTGERLRRRDEEVHRLRGE
                     LAAAQRRTERAESLASWQQEIAAAAEAQATELERELVTLRAEHSATAQRLISRYRDGV
                     ERAAPRGTLRRDLYERALGRGRAAPAASPRPGPVMLRTSTSPLLSVIVPVHGKWSYTR
                     ACLASIEAHRPVVPFEVLIVDDASPDDTAELATASPGVRLVRSERNVGFVGACNLGAS
                     QAQGAYLLFLNNDTEVAPGALDALVGAADSDDRIGLVGAMLVYPDGKLQESGGIIWAD
                     GSGWNYGRDQEASSAIFHVRRDVDYCSGAAILVRREVFEHVGGFDQRYAPAYYEDTDL
                     AFAIRATGYRTIVEPRAVVVHHEGVSHGTDLTAGVKRYQEINRAQFVDKWASTLADHL
                     PAASELNVWLACQRGPAGHRGDLVLVADHQVPTPDRDSGSMRMHRLLLVLVELGQRVV
                     FFPSNGALLQPYSEDLQRHGITVIPDAAGQDTFLREAGAALRLAVLSRPQVAWKFLEE
                     LRMQAPHCLICYDTVDLHFLRLQRQAELAAATGDGTAGALAGKAAASRELELGLARAV
                     DLTTVVSEHEQHLLRSLVPEADVRLLSNVHHVASAVAGPQGRAGLLFVGSFDHLPNRD
                     AAQWMAREVLPLVDRRRPGTVLHVVGSNPSPDVQELASETVEVHGWVPDLGPLHQRCR
                     MSVAPLRFGAGVKGKVGESMAAGLPTVCTPVAVEGMELVHGQHVLVATDATAFAEQVV
                     ALLDDDVLWCSLSEAGIGAITDRFGPQVARTALQDVLDTAAKGAHLPLT"
BASE COUNT          795 a         1609 c         1519 g          695 t
ORIGIN      
        1 gaccgtagct accgaacacc cacgactcgt agccctcgag cggggctggc caatgaaatg
       61 ccagcacgag cgccccatag ccggccatga acggaagcgt caccgctccg gccttggtgg
      121 tatgcacggc gatctggagc ccgaccagca accacgccac caacggcgac agcgggatct
      181 tgcctcggta agcgtgcagc accatgccga tgctgaaggc gacgaggaac gacaccaacg
      241 acccgatcgg cacctggagg aaggaaccgc catgcccggg gttgccgatg ctcgcatcga
      301 accggcgatc cagcccgatc agccccagca tcagcacgac ggtcaaccac ggcgcccggc
      361 gaaacagccc ggcgacgccg aaccccagca ccagcaggta accggtgagc tccatcggta
      421 gcgtccagat cgcgccgttg gccgaccagg gccacggatt atggtcgaac acccccggca
      481 gccgatgctg caacgtgtaa aggcccgcgt tgtggatgat gtaaccccag gtgccacggg
      541 ctgagaagta ctccgcgggg tcgagggtcg agaccagagg tccgattacc aaggcagtga
      601 ggagcaccac caccagcagc gggggccaca atctcagcac ccgcttggcg ctgaaacgca
      661 accaggacgg atcctgacgc cagctgtcgc tgatctgata gccgctcatc gcgaagaacc
      721 ccatcagggc gatgtagccg ggtgacagat tccacgagtt cggaaagacc gtcaggcgtg
      781 acgagtcggt cagcggtgcc gagtggtcga tcaccacgat cagcgcgccg atcatccgaa
      841 gccacgcgaa accggtgttc ggatgcgcct tcgggggctg cggcacgcgc gggagactaa
      901 caccggctgc tgaccggtcc agattgccgg ctcggccggc tgtgtctgat tgccggctcg
      961 gccggcgtgg gaggtcggcc gaggacacag agtggccgct gtgcacaatg tgcccgaccc
     1021 gataaccccc agggggtgca gagtgaagcc gaacgagtcg cctacggaca gcgcgccaga
     1081 ggcggccagc ccgtttccac cggcgttccg ttgggaggct gcccagcagg aggctccgac
     1141 gcaggtgatg ggcgcggtcg gccgagacgt tcggtcgagg ccggactacc agcagcgccc
     1201 gggcgaggcc ggggacctgt tccagccggt cggtgcgctc gccggcgagc ccatcggcca
     1261 ccctggcggt ggctcggccc caccgtgggg cggatcggat ctacccccca tcgccgaaca
     1321 acccgtcgcc gaagcgccca tcgcagaaca gcagagcgca tggctgcgcc agggtcccga
     1381 agtgttccag gctcccgcga tgcagccacg gtccaaacag gtcgtgggga ttgcggtgct
     1441 gtgcggtgtc ctgctggggc tgctgggtgc cacggtggcg tatttcctga ccgcgcactc
     1501 agcggaccgg accggtctcg atcaggctgc cggcgcccaa ccgacggcgg ccgctcgggc
     1561 ccttgcggat ccaccggctc cgctcgcggc accggtggac accgaacatg cattgatcga
     1621 cccgcccggt caatctcgtg gcggtggcgg cttgttcgat ctgcccaagc tcaagagcac
     1681 cggcctgctg cggcccgaaa ttcagaatgc cctgcaaacc ggcggaatga ccgacggtgt
     1741 cctgaagacc acgaccgtgg gtgccaacac gatcgggatg ttcgccctta ccatgcccga
     1801 ccagcaggcc gcgacgacgg tggcgcagga gatcgcgacc gtacagctcg acggtggtct
     1861 caaagcggac aacaaccgcg cgctacgggg cgttgcggtg atgggcagcg ttccaggctc
     1921 gcagcccacg gcgtaccggg cggtctatgt gctttacaac cgcgcgatct tctttgaagt
     1981 gttcggcccg aaccgtgacg cggtgctggc cacttttgac tttgtgacaa accagcaggt
     2041 gacttacgcg ccacccacgg tacgggtcgg acgttaggtc agcggcagat gcgcgccttt
     2101 ggcggcggtg tccagcacgt cttgtagtgc ggtgcgggcc acctgtggtc cgaagcgatc
     2161 ggtgatagcg ccgatcccgg cctcagacag gctgcaccac agcacgtcgt cgtcgagcag
     2221 agccaccacc tgctcggcga aagcggtggc gtcggtggcc accagcacgt gctgaccgtg
     2281 taccagctcc atgccctcca cagccaccgg cgtgcacacc gtgggcaggc cggcggccat
     2341 gctctcgccc actttgccct tcaccccagc cccgaaccgc agcggtgcca ccgacatcct
     2401 gcaccgctga tgcaacggcc ccagatcagg cacccagccg tgcacctcga cggtctcgct
     2461 cgccagttcc tgcacgtcgg gtgagggatt gctgcccacc acgtgcagga cagtgcccgg
     2521 acggcgacgg tccaccagcg gtagcacctc gcgagccatc cactgcgctg cgtcccggtt
     2581 gggtaggtga tcaaagctgc cgacgaacag caaacccgcg cggccctgcg gcccggctac
     2641 cgcgctggca acgtgatgca cattggacag cagccgcaca tccgcctccg gcaccaggct
     2701 gcgcagcagg tgctgctcgt gttcggagac caccgtggtc agatcgacgg cgcgggccag
     2761 ccccagctcc aactctcgcg acgcggcagc cttgcccgcc aaggcgccgg cagtgccgtc
     2821 gccggtggca gcggccagct ccgcctgccg ctgcaggcgc aggaaatgca gatctacggt
     2881 gtcgtagcag atcaggcagt gcggcgcctg cattcgcagc tcttccagga acttccaggc
     2941 aacctgcggt cgggacagca ccgcaaggcg cagcgccgcg cccgcttcgc gcaggaaggt
     3001 gtcctgcccg gcggcgtcgg gtatcacggt gatcccgtgg cgctgcagat cttcggaata
     3061 gggctgcaac agggcgccat tgctcgggaa gaacaccacc cgctggccga gctcgaccag
     3121 caccagcaac agccggtgca tgcgcatcga tccggaatcg cggtccgggg tgggcacctg
     3181 atgatcggcg acgagcacca ggtcaccccg gtggccggcc gggccccgct ggcatgccag
     3241 ccacacgttg agttcgctgg cagccggtag gtgatcagcc agggtcgacg cccacttgtc
     3301 cacgaactgc gcgcgattga tctcctggta gcgcttgacg ccggcggtga gatcggtgcc
     3361 gtgcgagacc ccctcgtggt gcaccaccac cgcgcgtggc tcgacaatcg tccggtaccc
     3421 ggtggcccgg atggcgaagg ctaggtcggt gtcctcgtag taggcgggtg cgtaccgctg
     3481 gtcgaacccc ccgacgtgct cgaacacctc gcggcgtacc aagatcgccg ctccggagca
     3541 gtagtcgacg tcgcgtcgta cgtggaatat cgccgatgag gcttcctgat cacgaccgta
     3601 attccagccc gatccgtccg cccagatgat gccgccgctt tcctgcagct tcccgtcggg
     3661 gtagaccagc atcgccccga ccaggccgat tctgtcgtcc gaatcggcgg caccgaccag
     3721 cgcgtccagc gctccgggcg ctacctcggt gtcgttgtta aggaatagca ggtaggcccc
     3781 ctgggcctgg ctcgcgccga gattgcacgc tcccacgaac ccgacgttgc gctcgctgcg
     3841 caccagccgc accccggggc tggccgtggc cagctcggcg gtgtcatcgg gtgaagcgtc
     3901 gtcgacgatc agtacctcga acggaaccac cggccggtgt gcctcgatgc tggccaggca
     3961 cgcccgggta taagaccact tgccgtgcac cggcacgatg acgctgagca atggcgaggt
     4021 gctggtgcgc agcatcaccg ggccgggccg tggtgacgct gccggggccg ccctcccgcg
     4081 tcctagagca cgctcgtaga gatcacggcg tagcgtcccg cgtggtgctg cccgctccac
     4141 accgtcccgg tagcgagaga tcaaccgctg cgcggtggcc gaatgctccg cgcgcaatgt
     4201 caccaactcc cgttccagct cggttgcctg cgcttcggct gctgcagcga tctcctgctg
     4261 ccaggacgcc agcgactccg cgcgctcggt ccgccgctgc gctgcggcca actcgccgcg
     4321 caggcgatgc acctcctcgt cacgacgtcg cagccgctcc ccggttcggg cggcatattg
     4381 gcgttgctcg gccagctcag cgctgagttc gccggcctgg tgccgttgct gggccagggc
     4441 gcgatgcgcg tcgcgcacca gggtcaggtc gggatcgacc agcacgtcga gttgtggcaa
     4501 ctccggcaac gccatatccg acgcaacgcc gagcaggtag gtgtggacca gttctggcgc
     4561 tacccgccag ccgccttcgg gggccctccg caaggatagc gcgatcccct gaccggcg
//
LOCUS       DASVXZ010000157         6171 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_824046, whole genome shotgun sequence.
ACCESSION   DASVXZ010000157 DASVXZ010000000
VERSION     DASVXZ010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6171
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_824046"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..105)
                     /locus_tag="VF788_03135"
     CDS             complement(<1..105)
                     /locus_tag="VF788_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEX8933187.1"
                     /translation="MDRSVRNLGRALVVIVDDRVAHGEHEDSTGPLVTE"
     gene            complement(175..1254)
                     /locus_tag="VF788_03140"
     CDS             complement(175..1254)
                     /locus_tag="VF788_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX8933188.1"
                     /translation="MGAVVLSLIVGLVAGSVGGAIGYELAGGGGARAISALDLPAPDA
                     LPVANVPNGSVEQVAQRVTPSVVQLRVHGTRVAGEGSGIVLSADGLILTNNHVVEPAA
                     NGGDLAAVLQDGRSVPVQIVGRAPSFDLAVVRAQGLTGLTPVELGSSSTIRVGQGVVA
                     IGSPLGLSGTVTSGIISALDRPVRAGGEGSGQETVLDAIQTDAAINPGNSGGPLVDMQ
                     GRVIGINSAIASLGSGSGQAGSIGLGFAIPIDQARRIGNELVHNGQATQAILGVTVPA
                     AQPEDTAARVRDVTPGGAAAAAGIQPNEMIVKVDDRVIDSGDALIAAIRSHPPGSQVT
                     LVVKNAAGATRQVQATLGSQEVGTR"
     gene            complement(1581..2933)
                     /locus_tag="VF788_03145"
     CDS             complement(1581..2933)
                     /locus_tag="VF788_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX8933189.1"
                     /translation="MSLRTRVTLLAAVCVGSAVALVSLAGYFTVRTSLYDQLDTTLLQ
                     RADSLRDTLANAEQLGGIPPSVFSAADIRVGLLDGRTGNSAVFGDMEMGPDELAVAQG
                     RRLQSLRTDRARDLRVVAVPTAPGAALVVARGLGATRTTLARLGLVFTLVGGAGVLLA
                     AAAGTAVAQGGLRPVQRLTEATERIARTGELQPIAISGDDELARLTGSFNTMLGALAD
                     SQERQRRLVADAGHELRTPLTSLRTNLELLAASDRPDAPSLFEQDRKEISDDVRAQVE
                     ELSALVGDIVELAREDAPQVVHEPVELTEVVERALARVGRRAPGVHFEVDLAPWSLLG
                     DANALERAVLNLLDNAAKWSPTGATINVQLAPTSRGTATVQVADAGPGIAEADLPYIF
                     ERFYRSSDARTLPGSGLGLAIVAQVAARHGGSVRASHRPEGGMLMTLELPGRPPTDHV
                     "
     gene            complement(2969..3667)
                     /locus_tag="VF788_03150"
     CDS             complement(2969..3667)
                     /locus_tag="VF788_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933190.1"
                     /translation="MRILVVDDDRAVRESLRRSLQFNGYTVALAGDGQQAMEVLAMQR
                     PDAMVLDVMMPRVDGLEVCRRLRGIGDDLPILVLTARDAVSDRVAGLDAGADDYLPKP
                     FALEELLARLRALLRRSPPEGNGIAGSAGIRFEFADLVLDEGTREVTRGERRISLTRT
                     EFSLLELLLRHPRQVLTRGRILEDVWGYDFPTSGNALEVYVGYLRRKTEAGGEPRLIH
                     TVRGVGYALRETPP"
     gene            complement(3733..4161)
                     /locus_tag="VF788_03155"
     CDS             complement(3733..4161)
                     /locus_tag="VF788_03155"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933191.1"
                     /translation="MEPVKVEDINWLMGHLRGVVAASPPAVWAGRGMTLLQLSAMHLI
                     SALAPVSLTDLARALGTRLPATSAMVDRLAHVGMVSRTPDPENRRRISLTPTAAAKMI
                     IGDTGPDTARRLHAVLTSLSPQIRGQVIDVLRGSVQHSAV"
     gene            complement(5050..5604)
                     /locus_tag="VF788_03160"
     CDS             complement(5050..5604)
                     /locus_tag="VF788_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8933192.1"
                     /translation="MGKMQWQCSMSLDGFIAGPGGDMSWLTEHLGPNPTVDEVVDEVG
                     ALLVGARTFRGDDPHKGTIKVGKPYGGGWTGPQFVLTHHAPDTPVPGVTFVGGLDSGV
                     AAAKAAAGDKYVGILGAEVARQCLDADVLDEILVPLCFDSAAPVSASGSARRLVTEVS
                     MSVGDGRHGRLRTAGSPRVQIFPW"
BASE COUNT         1009 a         2074 c         2055 g         1033 t
ORIGIN      
        1 ttcggtgacg aggggaccag tggagtcctc atgctcgccg tgcgctaccc gatcgtcgac
       61 aatgacgacg agagcccgcc ccagattgcg cacgctgcga tccatgccga gcaccgtatc
      121 gggcgcgatc tccaggagcg aagcaggtct cgatctccgc gcgggcggcg atcgtcagcg
      181 ggtacccacc tcttggctgc cgagcgtggc ctggacctgg cgggtggccc cggccgcgtt
      241 cttgacgacg agcgtgactt gggaacccgg tggatgggaa cggatggccg caatcagcgc
      301 atctccgctg tcgatcaccc ggtcgtccac cttgacgatc atctcgttgg gctggatccc
      361 ggcagcagcg gcggcaccgc ctggggtgac atctcgtacc ctggctgcgg tgtcctccgg
      421 ctgggcggcg ggcacggtca ccccgaggat ggcctgggtg gcctgaccat tgtggacgag
      481 ctcattgccg attcgcctgg cctggtcgat gggtatcgcg aagcccagcc cgatcgaacc
      541 cgcttgcccg ctgcccgaac cgagcgaggc gatggccgag ttgatgccaa tcacgcggcc
      601 ctgcatgtcg accagcgggc caccggagtt gccggggttg atcgcggcat cggtctggat
      661 cgcgtcaagc acggtctcct gaccgctgcc ctcgccgccg gcccgcaccg gacggtccag
      721 cgcgctgatg atgccactgg tcacggtgcc ggacaggccc agcggcgagc cgatcgccac
      781 cactccctgc ccgacccgga tggtgcttga gctgcccagc tccaccggag tcaggccggt
      841 gaggccttgt gcccggacca ccgcaaggtc gaaggagggc gccctaccga cgatctggac
      901 cgggacggag cgaccatctt gcagaacagc ggcgaggtca ccgccgttcg cggccggctc
      961 caccacgtgg ttgttggtga ggatcaaccc gtcggcgctg agcacgatcc cgctgccttc
     1021 accggccacc cgggtgccat gcacgcggag ctgcaccacg ctgggcgtca ctcgctgcgc
     1081 cacctgctcg accgaaccgt tcggaacgtt cgcgaccggc aacgcatcgg gcgcgggaag
     1141 gtccagcgcg ctgatggcac gtgccccccc accgccggct agctcatagc cgatggcacc
     1201 gccgacactg cccgcgacca aacccacgat gagcgatagg acgacggctc ccacgatagg
     1261 tctgttgcgg cgcggtccag gggcaccgga tggcggcggg ctgatcgggg cagtaggcgg
     1321 cgtcgctgcg ccggcttggg tcgcccaagc gccgcctggg tcgccatagg gccctggatt
     1381 gccatatgac cccgcgtcac cgtaaggccg gttccaaccc gattgcggat ggtcaggctg
     1441 ccagggtgac gtcggctgac cggtcgccgc cgcgcgcgga tcgggatgtg cggcagggtc
     1501 gctgggttgc tgcggtcgcg gcgtgtcgtc ggtcatgtct ccaggttgtc cttgattcct
     1561 gagaagtgca tgtgaagcac ctagacgtgg tctgtgggcg gtcggccggg cagctcgagg
     1621 gtcatgagca tcccgccctc cgggcggtgg ctggcccgca cgctaccccc gtgccgggca
     1681 gcgacctgcg ccacgatggc cagtcccaga cccgacccgg ggagggtacg cgcatcagat
     1741 gagcgataga accgctcgaa gatgtagggc agatcggcct ccgcgatccc cggtccggca
     1801 tcggccacct gaaccgtggc tgtgccacga ctggtcggcg ccaattgtac gttgatcgtc
     1861 gcccccgtgg ggctccactt ggcggcgttg tcgagcaggt tgagcaccgc gcgctccaga
     1921 gcgttggcgt cgccgagcag gctccacggc gcgagatcca cctcgaagtg gacgcccggc
     1981 gcccgccggc ccaccctggc tagcgcccgc tcgacaacct cggtcagctc caccggttca
     2041 tgcaccacct gcggggcgtc ttcgcgggcg agctcgacga tgtctccgac caaggcggag
     2101 agctcctcca cctgagcgcg cacgtcgtcg gagatctcct tgcggtcctg ttcgaacagc
     2161 gaaggagcat ccggacggtc ggaggccgcc agcagctcca gattggtacg caacgaggtg
     2221 agcggggtgc gcagttcgtg gccggcgtcg gcgaccagcc gtcgttggcg ttcttgcgag
     2281 tcggccagcg cgccgagcat ggtgttgaaa ctcccggtga gccgggcgag ctcgtcgtcg
     2341 ccggaaatgg cgatgggttg tagctcgccg gtgcgggcga tccgctcggt cgcttcagtc
     2401 agccgttgca cgggccgcag gcccccctgg gcaaccgccg tgcccgcggc cgcggccagc
     2461 aggacgcccg ctcccccgac cagcgtgaaa accagaccaa gccgggccag ggtggttcgg
     2521 gtggcgccca acccccgggc caccacgagg gccgcaccgg gggccgttgg cacggcgacg
     2581 acgcgcaagt cacgcgcccg gtcggtacgc aatgactgga gtcgccggcc ttgcgcgaca
     2641 gcgagctcgt cgggacccat ctccatgtcg ccgaagaccg cgctattgcc ggtgcggccg
     2701 tcgagcagac cgactctgat gtcggcggcg ctgaagacac tcggcggtat gccaccgagc
     2761 tgctcagcgt tggccaacgt gtcgcgcagc gaatcagcgc gctgcagcag cgtggtgtcg
     2821 agctggtcgt agaggctggt gcggacggtg aaatagccgg caagcgagac cagcgcgacg
     2881 gcgcttccca cgcacaccgc ggccagcagg gtgactctgg tccgcagcga catccgccgg
     2941 ttcccgaatt tcgggtcggc tgcctgcgtc acggaggcgt ctcccgcaac gcgtaaccca
     3001 cgcctcgcac cgtgtggatc agtcgtggtt cgccccccgc ttcggtcttg cgccgcaggt
     3061 agccgacata gacttccagg gcgttgccgg aggtggggaa gtcatagccc cagacgtcct
     3121 ccaggattcg accgcgggtg agcacctggc gggggtgccg gagcagcagc tccagcaggc
     3181 tgaactcggt gcgggtgagg ctgatgcggc gctcaccgcg ggtcacctcg cgggtgccct
     3241 cgtcgagcac gaggtcggcg aactcaaaac gtatccctgc cgacccggcg atcccgttac
     3301 cttcaggtgg cgaacgccgc aacagcgcgc gcaacctggc tagcaactcc tccagcgcga
     3361 agggcttggg caggtagtca tccgcgccgg catccaaccc ggcgacccgg tcagacaccg
     3421 cgtcgcgagc ggtcagcacc aggatcggca agtcatcccc gataccgcgc agccgccggc
     3481 acacttccag gccgtccacg cgcggcatca tcacatcgag caccatggca tcgggtcgct
     3541 gcattgcgag tacttccatg gcctgctggc catccccggc aagcgccacg gtgtagccgt
     3601 tgaactgcag cgaccggcgc agcgactcgc ggaccgcccg gtcgtcatcg accacgagga
     3661 ttcgcatgcg actagtgtgg accccccgcc tgagagtccc cttagacggc ctggcctgat
     3721 tgcgcagcgt gactacacgg cggaatgttg gaccgagccc ctgagcacgt cgatcacctg
     3781 gccgcggatc tgcgggctca ggctggtgag caccgcatgc agccgcctgg cggtgtccgg
     3841 accggtgtct ccgatgatca ttttggcagc agcggtgggg gtcaggctga tgcggcgacg
     3901 gttctcaggg tccggtgtgc gggacaccat ccccacatgg gcgagccggt cgaccatcgc
     3961 ggacgtggcg ggcagtctgg tgcccagggc ccgagccaga tcggtgaggc tgaccggggc
     4021 caacgcgctg atcaggtgca tcgcgctgag ctgcagcagg gtcatccctc ggcccgccca
     4081 cacggctggc gggctggcag ccacgacgcc ccgcaggtgg cccatgagcc agttgatgtc
     4141 ctccaccttc actggctcca cgggctggcc accgctcgca tgttgatcat tgaaccgggt
     4201 ttgggtctgc cgtccgtcac ccaccgtgca cgttcacccc tcccacgcca gcgcttcgtt
     4261 actatgtagg ctagcctaac ttaatcgaga ttggctctcg cccaaccggg tgggtcgcac
     4321 ggcgctggga aagccaccgg tgccggactg atccggccac gaacctctac cctctgcgtg
     4381 cgccaacgcc ggctctgcca cagccgcccg ccggcggcag tctcgtatta cttcggaggg
     4441 ctcatgcgga aacaggttct tgccgggacg gttctcactg tcgcggggcc gattttggcc
     4501 ctcgccggat gtgtatcgca acagcagcac gcgtcgacat cactccaatc ggtccctgcc
     4561 gagcgattgg agcaaccacc ggcacggtat gaggcatcga catcggcgca gtcagcggtc
     4621 gtagaagtca aggccgccct gcagcactac gtctttcccg ttcaagactg ccggaccaat
     4681 tatggcgcaa cgcaccacga ctaccccgcg accgacgttt tcacgcatcg gggttgcgcc
     4741 ttcgtagcag ttaccgacgg taaggtcgac gaagtgacat cggtcgacca ctgggatccg
     4801 cagaccaatc gtggtgagga tcgcggtgga ctgtcagtat ccatcgtggg gaccgacggg
     4861 gttcgttact acggttctca tctcgagtca gttgctggcg ggatcgttcc cgggaagctg
     4921 gtccgcgccg gggaattgct cgggcgggtc gataattcag gcgatgcccg taccacgccg
     4981 actcatgtcc acttcgggat ctcatggccg acccgaccgg gcatctggtg gatccgccgg
     5041 ggcgaggtgt caccatggaa atatctgaac tcttggcgat ccggcggttc tgagtcgccc
     5101 gtggcggccg tcgccaacgc tcatcgaaac ctcggtgacg agccgccgtg ccgagccgga
     5161 tgctgaaaca ggtgcggcgg aatcgaaaca caaggggacg aggatctcgt cgagcacatc
     5221 ggcgtcgagg cactgccggg caacctcagc gccgaggatg ccgacgtact tgtcacctgc
     5281 ggcggccttg gccgcggcga cgccgctgtc aaggccgccg acgaaggtga cgcccggcac
     5341 cggagtgtcc ggggcgtggt gggtaagcac gaactgtggt ccagtccacc ccccgccgta
     5401 tggcttgcct accttgatcg tgcccttatg cgggtcgtca ccgcgaaagg tgcgggcgcc
     5461 gacaagaagg gcgcctacct cgtcaacaac ttcgtccacc gtcgggttgg gcccgaggtg
     5521 ctcggtcaac caggacatgt caccacccgg gccggcgatg aagccgtcca gcgacatgct
     5581 gcactgccac tgcatctttc ccatgagcta cctccgtcga gatcaacatg gtcgactcca
     5641 cctcgtcgcc ctcgtccgcg ctggtgtcgt gtgcgaagac ggcaagctcg tagtgcgacc
     5701 gacgagcacc tacaaccgga agcagcctaa agattttcat ccataggtgt cgacaattgc
     5761 tcctttggga acgagaggct gtcctagcta gcaatcctgc cgccgtgcgc agcgctcgct
     5821 gcccactccg actcgctatc tcttgtgcac agcgaagtta gcgacgatct acgcgttgtg
     5881 atgatgtgag gaaattcgct gaactccttg cgtacaatgc cgataaccgg ttatctctct
     5941 tgcgagtgtc cttgacgggc ggtgcattgc cgcagagccg ggggaggcta caccatgagc
     6001 cggcaggaaa ctgcacccag cgggctacgg gggttgcgcg ttcgccggtt gcgttccgcg
     6061 ctgaccatgc tcagcctgat catcggggtt tcggcggtga ttctgctggt cgcctgcggc
     6121 tatggggtga agaactcggt caatgcgcgc gtcgaaacga tggccaatca g
//
LOCUS       DASVXZ010000158         3309 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1541346, whole genome shotgun sequence.
ACCESSION   DASVXZ010000158 DASVXZ010000000
VERSION     DASVXZ010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1541346"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..904
                     /locus_tag="VF788_03165"
     CDS             <1..904
                     /locus_tag="VF788_03165"
                     /inference="COORDINATES: protein motif:HMM:NF028132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933193.1"
                     /translation="ISHPSIAPFPTVIEGNDGWLYLGADVSGACAPSRSLSDTLVSLR
                     RLRAAVEASGRRFILVVPPDKTTMVPEHLPVDYLGKGCAAQARGEFWRRVVAEAGAID
                     LRPALVDIAQRKGSPVYSAADTHWSQEGGLAMTYTLADRVVPGVTRTWQGAPSGSIPW
                     PEDIPPLIGRSGMRQLATYSLAPDGQRDRTRSIASDFRVPLRLTSLPITGSVTAPVRM
                     IADSFTQFASRYLAAAFTDITVVHPETVAAAPQPAGELLAGGKVVVLEVAERNLLSGT
                     SPILLQPVIDEIATQLAQQPLAGR"
     gene            complement(947..1318)
                     /locus_tag="VF788_03170"
     CDS             complement(947..1318)
                     /locus_tag="VF788_03170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015101081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HEX8933194.1"
                     /translation="MVDRRLFGVHEARVLLPEVRRRVDALIEVRADLTELSMDLRRLG
                     SSPLGALAEMKALQARFDHMLEWFSEQSVEIKGLAPVLIDFPAELDGESVRLCWLEGE
                     TELAWYHRSDLGIAGRRRLPD"
     gene            complement(1351..1836)
                     /gene="bfr"
                     /locus_tag="VF788_03175"
     CDS             complement(1351..1836)
                     /gene="bfr"
                     /locus_tag="VF788_03175"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HEX8933195.1"
                     /translation="MRGDDEVLALLNEQLTSELTAINQYFLHAKMQANWGFTKLAEHT
                     RHESIDEMKHAERITDRILFLEGLPNYQKLLPLRIGQTVKEQFEADLAVEMEVVARLR
                     PGIGMCREKGDITTANIFEDILADEEEHIDYLETNLELIDKLGEQLYLSQLVERPPTN
                     G"
     gene            complement(1964..2203)
                     /locus_tag="VF788_03180"
     CDS             complement(1964..2203)
                     /locus_tag="VF788_03180"
                     /inference="COORDINATES: protein motif:HMM:NF016230.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX8933196.1"
                     /translation="MCLGSPNHSIEGDDAMYVCICRAVTDSVVRGCIAEGARTVKDIV
                     VRSDAGTGCGTCVSKIIALLGAHIDELDGPLQQSA"
     gene            complement(2283..2459)
                     /locus_tag="VF788_03185"
     CDS             complement(2283..2459)
                     /locus_tag="VF788_03185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933197.1"
                     /translation="MHPGLGAILHQRGHDIILASTTDIFGPPDGAYSATRYCWRWALE
                     PTARVPPDRRVNET"
     gene            2537..2977
                     /locus_tag="VF788_03190"
     CDS             2537..2977
                     /locus_tag="VF788_03190"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEX8933198.1"
                     /translation="MDAEGGCCCRVPFHCAVALGVLNLSKGEAKARVEQADQLMPRRS
                     LTGEVLIPRLPATAAGLAAGELGPGHLRVITAIMRRIRRRPPVERVPDLRSSARRNAD
                     ALVEAMSKPHHVMARRRRDEIIQHVPVMRVSSRYRASARMAYPA"
BASE COUNT          570 a         1057 c         1058 g          624 t
ORIGIN      
        1 gatctcgcat ccctcgatcg ccccgttccc tacagtgatc gagggcaacg atggctggct
       61 ctacctcggc gcggatgtca gtggcgcgtg cgcgccgtct cgctcgctga gcgacacact
      121 ggtgtccttg cgtcgtttgc gtgccgcggt agaggcttcc ggtcggcggt tcattctggt
      181 ggtgcctccg gacaagacga ccatggtgcc cgaacatctg cccgtcgact acctcggcaa
      241 aggctgtgcg gcccaggcca gaggagagtt ctggcgccgg gtggtcgccg aggccggggc
      301 gattgacctg cggccggcgc tcgtcgatat tgctcagcgc aaaggctccc cggtgtactc
      361 cgcggctgac acccactgga gccaggaagg tgggttagca atgacctaca ccctggccga
      421 tcgggtggta cccggcgtca cccgcacctg gcaaggcgcc ccgagcggct ccatcccgtg
      481 gcccgaggac attcccccgc tgatcggccg tagcgggatg cggcagctgg ccacgtattc
      541 gctggcaccg gacgggcagc gggaccgtac ccgttccatc gccagtgatt tccgggttcc
      601 gctccggctg acgtcgttgc ccattacggg ttccgtcacg gcgcccgttc gcatgattgc
      661 cgactcgttc acccagttcg ccagccgcta tctggctgct gccttcaccg acatcaccgt
      721 tgtacatcct gagaccgtcg ccgctgcgcc ccagccggct ggggaactgc ttgccggcgg
      781 gaaagtcgtg gtactcgagg tcgctgagcg caacctcctc agcggcacat ccccgatcct
      841 gctccaaccg gtgatcgacg agatcgccac ccaactcgcc cagcagcctc tcgccgggcg
      901 gtagcccgaa gttctgacgt gtccgagacc ggtggtcgcc agagggtcag tcagggagcc
      961 ggcggcgtcc agcaatgccc aggtcggagc ggtgatacca ggccaactcg gtctcaccct
     1021 ccagccagca cagccgcacc gactccccgt cgagctcggc agggaaatcg atgagcacag
     1081 gtgcgagacc tttgatctcg acgctctgct cggagaacca ctcgagcatg tgatcgaacc
     1141 gggcctgcag cgccttcatc tccgccagag cgcccagcgg agacgagcca aggcgccgca
     1201 ggtccatgga cagctcggtg agatccgccc gcacctcgat cagtgcgtcg actcgccttc
     1261 gcacctcggg caataaaact cgggcctcgt gcactccgaa cagccggcga tcaaccactc
     1321 ggcaacggta gtcgtcgcgg cgctgtccgg tcagccgttg gtcggcggtc gttccacgag
     1381 ctggctgaga tagagttgct cgccgagctt gtcgatcaac tccagattgg tctcgaggta
     1441 atcgatgtgc tcctcctcgt cggcgaggat gtcctcgaag atgttggcgg tggtgatgtc
     1501 acccttctcc cggcacatcc cgatgcccgg ccgcagccgt gcgacaacct ccatctcgac
     1561 tgccagatcc gcctcgaact gctctttaac ggtctgcccg atgcgcagcg ggagcagctt
     1621 ctggtagttc ggcagaccct cgagaaacag aatgcggtcg gtgatccgct ccgcgtgctt
     1681 catctcgtcg atggactcat gtcgggtgtg ctctgcgagc ttggtgaatc cccaattggc
     1741 ctgcatcttg gcgtgcaaaa agtactgatt gatggcggtc agctcgctgg tgagttgctc
     1801 gttgagtagt gcgaggacct catcatcgcc gcgcatgaag tcaaaccccc tctagatcgt
     1861 tcctggacca tcgcgaccgt acgcgttcac cggggggttg tcacggaagg tgagcctcgc
     1921 ctgaccaggg aatatggaga tcattcggtc aaaagctcac caatcaggcg ctctgctgca
     1981 gcggaccgtc caactcgtcg atgtgggcgc cgagcaaggc gatgatcttg ctgacgcagg
     2041 tcccgcaccc ggtgccggcg tcgctgcgga caactatgtc cttgacggtt cgggcgccct
     2101 cggcgatgca cccgcgcacc acggaatcgg tcaccgcccg gcagatgcag acgtacatgg
     2161 catcgtcgcc ctcgatcgag tgattagggg agcctaagca catcagatca tcgggataac
     2221 gtctagccct ccggagctcc aagcttgctc ggtggagctc ggtggtcggt gggcggtcgc
     2281 tatcaggtct cgttgacgcg ccggtccggt ggcacgcgcg cggtgggctc cagcgcccag
     2341 cgccagcaat agcgcgtcgc ggaatatgcg ccgtccggcg gcccgaaaat atcggtggtg
     2401 gatgcgagaa taatgtcatg accgcgttgg tggagaatcg cgccgaggcc cggatgcatg
     2461 ggctgttgac gggtttacgc gaggctgagg cggatttccg gcggtcttat gcgggggtcc
     2521 tttccatcgt cgctgaatgg atgcggaagg cgggtgctgt tgccgggttc cgttccactg
     2581 cgcggttgct ctcggggtgc tgaacctgtc caaaggtgag gcaaaggctc gcgtcgaaca
     2641 ggctgaccag ctcatgccgc gtcggtcatt gactggtgaa gtgctgatac ccagattgcc
     2701 cgccacggct gccgggctcg ccgcgggcga gctcggaccc gggcatctgc gggtgatcac
     2761 cgcgatcatg cgccggatcc gccgtcggcc gccggtggag agggtcccgg atctgcgcag
     2821 ctctgcccgg cgcaacgctg atgccctggt ggaggcgatg agcaaaccac atcacgtcat
     2881 ggctagacgg cggcgagacg aaattatcca acatgtgcct gttatgcgag tatcatcacg
     2941 ttatcgtgcc tcggcaagga tggcatatcc ggcttgatac tcgcggatac ccggaatttt
     3001 attcctccaa agacagtgga tccgacaaga acaccactgc gcgacccgct ccggcagtga
     3061 gcagcagtgg cacgctgatc aggtaacgct cgccggcgag gcggacatac aaggtttccg
     3121 gctacgaaac ccggcccgcc aggcccgcgg acatcgaggg gtgtaacacc gtctgccgtc
     3181 acgttcatgg gcatgatcgg gctggtgagc tgaccgatgc cgtcgcgcag aacacagcgc
     3241 tggtggtcga gcatgacggc cgaatcagcg gatacgccac tgttttggcg ttcttcgccc
     3301 atgcggtgg
//
LOCUS       DASVXZ010000159         2355 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1541423, whole genome shotgun sequence.
ACCESSION   DASVXZ010000159 DASVXZ010000000
VERSION     DASVXZ010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1541423"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            577..966
                     /locus_tag="VF788_03195"
     CDS             577..966
                     /locus_tag="VF788_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020421188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933199.1"
                     /translation="MATLDDVTQMALELPAVAEGERHGNRTWSVAGKGFAWERPFSKA
                     DLKRFGEATPPDGPILAVRIDDISEKEAVLAAQPEAFFTIPHFEGYAAVLIQLGNVSK
                     KALKDVIIDGWAACAPPKLAEQYFKRR"
     gene            complement(1259..1381)
                     /locus_tag="VF788_03200"
     CDS             complement(1259..1381)
                     /locus_tag="VF788_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933200.1"
                     /translation="MISAGRAFVQNFHRGHHDIATQIQPSPQLPVAFAEVALAI"
     gene            complement(1583..2122)
                     /locus_tag="VF788_03205"
     CDS             complement(1583..2122)
                     /locus_tag="VF788_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933201.1"
                     /translation="MFYAFGFERVGVVMGDLYFVDPDPLPGQEGAERGVRLEVRLLEP
                     GELKGSIYSARPIVVDRPVWRVDLLEAVTGSPGSLDRAHHHPAFSGWEPSPRYFVDGL
                     SARPLDWVAAQLSDLDALLERAGLASADIGAGDAQALRQAVPEITDALARLLDQVKAG
                     QLALPQGEEQLASARIGWL"
BASE COUNT          412 a          739 c          781 g          423 t
ORIGIN      
        1 agctagcact cgccccggtc agcggcacgt cggcggcggg gacctcgctt gtcggagtca
       61 tacaccacgg cgccttcgtc gggatcccca gcgcgaacgc cctgcgctgg gcggtcacga
      121 gtatcgtggt cgtccttggg cagggttgca ttgagcgatc ggcccactcg acccgatcca
      181 ctcgctcgcc caagagcgat gggagagatc ctcaaatgtc tggtttattg gtttccagga
      241 cacctgaagg gccttgccgc cctgcttggt gcacggcgcg ctcttcgcct caatgcagca
      301 gtcccctccc acccctcagg tcggagctca tggcagcggc ctagtctcgt agccgcgtgg
      361 cggcgggcac agtgaccaga acgctcgtag tcgtcggcgg ccgcgtggcg atcagccacc
      421 ttccccggaa cgactcggtc cttctctgcc gtgctgaggt ttcacctttc gaccgaagca
      481 gcgcgaagcc caccggaacg tcccgagagc cgcgcgtgtc acgcggcagg cgaggacgtc
      541 ttctgcaatc tcaattgaag gcgttacggt acgagcgtgg cgacccttga tgacgtgacc
      601 cagatggcct tggagctgcc cgcggttgct gaaggtgaac gtcatggcaa ccgtacgtgg
      661 tccgttgcag gtaagggatt cgcgtgggag cgaccgttta gcaaggcgga cctcaagcgg
      721 tttggcgagg cgaccccacc agacgggcct atcctggcgg ttcggatcga cgatatcagc
      781 gagaaggaag ctgtactcgc agcgcagccc gaagcattct ttacaatccc acatttcgag
      841 ggctacgctg ctgttcttat tcagttaggg aacgtctcca agaaggcttt gaaagacgtc
      901 attatcgatg gctgggcggc atgcgcaccg ccgaaacttg ccgaacaata tttcaagcgc
      961 cgttgacacg gcgtcatggt gacgcgcgcc ctgcgtgttt agcggcagat gagtgatgca
     1021 acgtttcgcg tcgctactgc attcgatgcg cggcctgcga gtgctgagca agattgttca
     1081 cgtcgtggga cctgttggga ttcatgggtc acccttctaa atcgatcatg gagtgccacg
     1141 cgcatcacgg tgcgtgcctt cttaacagaa gatgctcgtc cgtcgagcgg gatacatacg
     1201 caagggcggt gttgcgttgg ctgagaggtc agacttggcc gcggattggt gccctggatc
     1261 agatggcgag ggcgacttcg gcgaacgcca ccgggagctg agggctcggc tggatctggg
     1321 tggcgatgtc gtggtggccg cggtgaaagt tctgcacgaa cgcgcgtccg gcactgatca
     1381 cccggccgag cggagttgtt tgatgccacg catcggctgc agccgggact tcagccgccc
     1441 gtgatcggct tcgatggcga tgtttggcgt actgctgcat gacgtggcag gcagggggca
     1501 gcaagtcacc gcgggttttg tcgcggcact gcgctaggcg ggcggaggcc ggcttccgac
     1561 gtccaacagc gccggcatga ggtcatagcc agccgatgcg cgcgctggcc agctgctcct
     1621 cgccctgcgg gagggccagc tgccccgcct tcacctggtc gagcaaccgc gccagcgcgt
     1681 cggtgatctc gggcacggcc tgccggagcg cctgggcatc gccggcaccg atgtcggccg
     1741 acgccaaacc ggcccgctcg aggagggcgt cgagatcgga cagctgagcg gccacccagt
     1801 cgagcggccg ggccgacagc ccgtcgacga agtagcgcgg gctcggctcc caccccgaga
     1861 aggccgggtg gtggtgggcc cggtccaagc tgcccggaga cccggtcacc gcctccaaga
     1921 ggtcgaccct ccagacgggc cggtcgacca caatcggtcg agccgaataa attgagcctt
     1981 tcagctctcc cggttcgagc agccgtacct ccaggcgcac accgcgctcg gcgccctcct
     2041 gtcccggcag cgggtcggga tcgacgaagt acaggtcgcc catcaccacg ccgactcgct
     2101 caaacccaaa ggcgtagaac atgacgccct ccccggtctg aagtgccgtc tcactgtaga
     2161 gagccggccg acgctgggtc tacagccctc cggagaggca gcagcggaca aaaccgcagc
     2221 ggctcgccca tgccggggta ttgctccggt cacggggcct ccagcaagcg gacaagggga
     2281 atgatgcccc tatggatgtc aagctgctga cggctcggct tcgggtgggg tggtgatgat
     2341 ctgatagatc tcgcg
//
LOCUS       DASVXZ010000160         3489 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_196775, whole genome shotgun sequence.
ACCESSION   DASVXZ010000160 DASVXZ010000000
VERSION     DASVXZ010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3489
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196775"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1159
                     /locus_tag="VF788_03210"
     CDS             <1..1159
                     /locus_tag="VF788_03210"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8933202.1"
                     /translation="TVVFGLKYPYAPFAQRLLLGIVPRKAFDGRDINTAPFNTAPVGT
                     GPYMVTEWRKGDRMVLKANEGYWDGAPAVKTATLVFVTDDNARATRMAAGEFDAAVLP
                     PKLAKTYTGRDGYQVVQAQSADYRGLGIPSELPFTSDTRVRQAINVGINRQAMIDTVL
                     AGAGKPAATPISPYLSQWYDPNAAFRYDPAAAGRLLDQAGWTLGSDGKRSRDGESARL
                     PILYPAEDTLRKELALASASDLAKLGIDAPVEGTTFEIMLKQQKETASIWGGGDPYDP
                     DSAAYTLLNSRYIGQPGYVNMTLYRNAGVDAALDTGRRSLDPAVRKRAYDEFQTAYVA
                     DPGWAFLVFLDHTYVLRDKWNGQAPQIEPNDHGVLHALWWNLDKWTPKSTS"
     gene            1209..2195
                     /locus_tag="VF788_03215"
     CDS             1209..2195
                     /locus_tag="VF788_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933203.1"
                     /translation="MRRGRGRAIGLLVARRLAFGVPLLLVVSLGMFVLAKASPFDPVQ
                     RYFGARIIGASAERVSQIRENWGVDAPVLTQYGAWLAHAVTGDFGDSHSLQQPVSQVI
                     GERLGWSVLLLAVAFACALLLGVVLGTAAAWRQGGWLDRAVTGASYVLEAAPVFWLGL
                     GALYVFAVALQWLPGGGLADPGAGLSAGQLVRHLILPATVLAVSQAPWFVLFVRQTLL
                     EALTEDYVLGARSRGLPERRVVVGHALRTALLPFLTLLGARVPELITGALLVETVFSW
                     PGIAKATVDAALNVDFSLLAALTLLATAAVLAGNLLADALYALADPRVALDG"
     gene            2188..3102
                     /locus_tag="VF788_03220"
     CDS             2188..3102
                     /locus_tag="VF788_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933204.1"
                     /translation="MAELILTAPADPSPRWRPATRSRIGTAAPPRSPRLRLISSALIL
                     GVLGVAVLLVPPVVGLDQQVVDLAVANQPPGPGHWFGTDELGRDVLLRCVYGLRVSLA
                     VGLVAALVSTVLGTAVGAIAGATGGWTDRVLMRVLDAVASVPHLLLGIIIVAVLRPSL
                     TAVVISIAATHWLSSARIVRSEVLSLRTRPFIEAAIVGGSSRSRIVARHLLPNVAPQV
                     LLATTLMVPHAIWHETALSFLGLGLPPHLASIGNMLNDAQRSLLIGGWWMSLAPGLVL
                     VITTLAVAGLGGVWRDRLNPRRRSELSW"
     gene            3099..>3489
                     /locus_tag="VF788_03225"
     CDS             3099..>3489
                     /locus_tag="VF788_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010306690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8933205.1"
                     /translation="MSTAAELDVTGLGVRFTIPGAQVAAVSDVSFQIQPGECLALVGE
                     SGCGKSVLAAALLGFLPGNAEIAGDATLSSADRPPIELLTASDQVLARTVRGRRIGLI
                     PQSPAAHLTPVRTARAQLEETVRVHHPG"
BASE COUNT          467 a         1226 c         1195 g          601 t
ORIGIN      
        1 gaccgtggtc tttgggctga agtaccccta cgcaccgttc gctcagcggt tactgctggg
       61 catcgtgcca cgtaaagcct tcgacggtcg ggacatcaac accgcgccgt tcaacactgc
      121 tccggtgggc accggtccct acatggtcac cgagtggcgc aagggtgacc ggatggtgct
      181 caaggccaac gaggggtact gggatggggc accagcggtg aagaccgcga ccctggtgtt
      241 cgtgaccgac gacaacgccc gggcgacgcg gatggcggcc ggggagttcg acgccgcggt
      301 gctgccgccg aagttggcca agacctacac cgggcgggat ggttaccagg tcgtccaggc
      361 gcagtccgcc gactaccggg gcctcgggat cccctcggag ctgccgttca cctcggacac
      421 ccgggttcgt caggccatca acgtcgggat caaccggcag gcgatgatcg ataccgtgct
      481 cgccggcgcc ggcaagccgg cggcgacacc aatctcgccg tatctgagcc agtggtacga
      541 ccccaacgcc gcgttccgat acgacccggc ggcggccggg cggctgctgg accaggcggg
      601 ctggacgctg ggatctgacg gcaagcgctc ccgagacggt gaatccgccc ggctgccgat
      661 cctgtatccg gccgaggaca ccctgcgcaa ggaactggcg ctggccagcg ccagcgatct
      721 ggcgaagctg ggcatcgatg caccggtgga gggcaccacc ttcgagatca tgctgaagca
      781 gcagaaggag accgcgtcga tctggggcgg cggtgacccc tacgacccgg acagcgccgc
      841 ctacacgctg ctgaactccc gttacatcgg ccagcccggt tacgtcaata tgaccctcta
      901 ccgcaacgcc ggagtcgatg ccgcgctgga caccggccgg cgcagcctcg acccggccgt
      961 ccgcaagcgc gcctacgacg agttccagac cgcctatgtg gccgacccgg gctgggcgtt
     1021 cctcgtcttc cttgaccaca cctacgtgct gcgggacaag tggaacggtc aggccccgca
     1081 gatcgaaccg aatgaccacg gggtgctgca cgcgctgtgg tggaaccttg acaagtggac
     1141 ccctaagtcc acctcatgat cacggcctca tcatgatcgc tgttgatccg acacctggca
     1201 gcgctgctgt gcgacgtggg cggggtcgcg cgatcggcct gctggtggcc cggcgcctcg
     1261 ccttcggtgt tccgttgctc ctggtcgtga gcctggggat gttcgtgctc gcgaaagcct
     1321 caccatttga tccggtacag cgctacttcg gagcgcggat catcggtgcc agcgcggagc
     1381 gggtctccca gatccgggag aactgggggg tcgacgcccc ggtgctcacc cagtacggcg
     1441 cctggctggc gcacgccgtc accggggatt tcggtgattc gcactcgttg cagcaaccgg
     1501 tctcccaggt catcggggaa cggctgggtt ggtcagtgct gctgctggcc gtggccttcg
     1561 cctgcgcact gctgctgggc gtcgtcttgg gcaccgcggc tgcctggcgt cagggcggct
     1621 ggttggaccg ggccgtcacc ggcgcctcct atgtcttgga ggccgcaccc gtgttctggc
     1681 taggcctggg ggcgctgtac gtcttcgcgg tggccttgca gtggctaccc ggcggtggac
     1741 tcgccgaccc tggcgccggg ctgagcgccg ggcagctcgt ccggcatctc atcctgcctg
     1801 caacggtgct cgcggtgtcc caagcgccgt ggttcgtgtt gttcgtgcgg cagaccctgc
     1861 tcgaggcgct caccgaggac tatgtgctcg gtgcccgcag ccggggcctg cccgagcgga
     1921 gggtcgtggt gggtcacgcg ctgcgcaccg cgttgttgcc gttcctgacc ctgctcggcg
     1981 cccgggttcc agagctgatc actggggcgt tgctggtgga gacggtgttc tcctggcccg
     2041 ggatcgccaa ggccactgtg gacgccgcgc tgaacgtgga cttctcgttg ctggccgcgc
     2101 tcaccctgct cgccaccgcg gcggtgctgg ccgggaacct gctcgccgat gcgctctatg
     2161 cactggccga cccgagggtg gcgctggatg gctgagctca tcctgaccgc cccggccgac
     2221 ccctcgcccc gctggcgtcc agctacccgg tcccggatcg gtacggcggc cccgccccgc
     2281 tcgccgcgac tgcgcctgat ctcctccgct ctcatcctcg gggtactcgg cgtcgcggtg
     2341 ctactggtac cgccggtggt cggtctggac cagcaggtcg tcgacctcgc agtggccaac
     2401 caaccgcccg ggccagggca ctggttcggc accgacgagc tcggccgcga tgtgctgctg
     2461 cgctgtgttt acgggctgcg cgtctcgctg gccgtcggct tggtcgccgc gctcgtctcc
     2521 acggtgctgg gcaccgcggt cggcgcgatc gccggagcca ccggtggatg gaccgaccgg
     2581 gtgctgatga gagtgctcga cgcggtcgcc tcggtgcccc acctgctgct gggcatcatc
     2641 atcgttgcgg tgctgcggcc cagcctgacc gcggtggtga tctcgatcgc cgcgacccac
     2701 tggctgtcct cggcgcgcat cgtccgctcc gaggtgctct cgctgcgcac caggcccttc
     2761 atcgaggccg ccatcgtcgg cggatcctcg cgcagccgga tcgtggcgcg tcacctgctg
     2821 cccaacgtgg ccccgcaggt gctgctcgcg acgaccctga tggtgccgca cgccatctgg
     2881 cacgagaccg cgctgtcgtt ccttggcctg gggttgccac cgcatctggc cagtatcggc
     2941 aacatgctca acgacgcgca gcgctcgctg ctcatcggcg gctggtggat gtcgctggcc
     3001 ccgggcctgg tcctggtgat caccactttg gccgttgccg ggctaggcgg ggtgtggcgc
     3061 gaccggctca atccccggcg acgctcggaa ttgtcctggt gagcaccgct gccgaactgg
     3121 acgtgaccgg tctcggggtg cgcttcacga tccccggggc ccaggtcgct gcggtcagcg
     3181 acgtgtcctt ccagatccag cccggtgaat gcctggcgct ggtgggggag agcggctgcg
     3241 gcaaatcggt gctggccgcg gccctgctcg gcttcctgcc cggcaatgcc gaaatagccg
     3301 gcgacgccac gctcagcagt gcagaccggc cgccgatcga gctcctcacg gcgtccgatc
     3361 aggtcctggc ccgcaccgtg cgcggccgcc ggatcggcct gatcccgcag agccccgcag
     3421 cgcacctcac cccggtgcgc accgcccgtg cccagctgga agaaaccgtc cgcgtccacc
     3481 accccggcg
//
LOCUS       DASVXZ010000161         3708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1182899, whole genome shotgun sequence.
ACCESSION   DASVXZ010000161 DASVXZ010000000
VERSION     DASVXZ010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1182899"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VF788_03230"
     CDS             complement(<1..184)
                     /locus_tag="VF788_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013222412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEX8933206.1"
                     /translation="MRHEVTLLVREECHACAAVREDIARICAELGVPWHTTDVDTDPE
                     LRAEYGDRVPVILVDGR"
     gene            555..1202
                     /locus_tag="VF788_03235"
     CDS             555..1202
                     /locus_tag="VF788_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012795796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8933207.1"
                     /translation="MPHPAAPESSAPDSSTGQDQAAETSAAEPAGSEVDTAAWELVAA
                     AQQGDQNAFGQLYDRYVDVVFRFVLFRVGDRPLAEDLTSETFLRALRRISSVSYQGRD
                     VGAWFVTIARNLVLDHVKSSRYRLEMTTADILDSSADDRGPEHEVVEEATATELMRCV
                     AQLGRDQQECIMLRFMQGLSVSETAAMMGRNEGAVKALQHRAVRRLAQLLPEGLR"
     gene            1297..2505
                     /locus_tag="VF788_03240"
     CDS             1297..2505
                     /locus_tag="VF788_03240"
                     /inference="COORDINATES: protein motif:HMM:NF039823.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5667 domain-containing protein"
                     /protein_id="HEX8933208.1"
                     /translation="MRTTRTSGGRPSDGQEQDAFARAVDSGMRDVSDRSLQRELTVVA
                     SLRQVGAAAGPNPAERDRMRQRVMAEFDSVVHEGNSPVLPLRAPRQRRWIPDQTRGRL
                     VVAAAAALCLLMSLSGMSVLLSRDALPGDALYSFKRTAESAELGLTFGDQPKALKHLE
                     FASARVNEIEIMADQADAAGNWSAEQEKFLRALEDFDSDATAGARLLTGLAFNGQPTS
                     LSALRGWAEQQKTRLAAVRAALTLPTGARMDSTLALLDRITTRASALSHRTSCVTITT
                     GTQDELGVLPSRDACKQVPVDGTSSAVPLPDVPPVPQVIQPSVDTPPNLLLRPPSANA
                     VPVPTQNGKGQPKLPGTRNPGGVLTNPSRPGAEPLQPEPWRPLPGQDAPKPATPLPPW
                     ILQPSLLPPG"
     gene            2759..3583
                     /locus_tag="VF788_03245"
     CDS             2759..3583
                     /locus_tag="VF788_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HEX8933209.1"
                     /translation="MSNVAGGVAAELGIAQDLTAAAFFDLDNTMMRGASVFYFAQGLA
                     ARNFFPAGALASIAWQQLRFRVGGKELSPEEIRTSREQALSFVAGRSTRQFVELGEVI
                     YDELMAERIWSETLALAQIHIEAGQRVWLVTATPVELATIIARRLGLTGALGTVAETV
                     DGVYTGRLVGDILHGAAKAKAVRALAIREGLDLQLCTAYSDSANDIPMLSMVGTAVAV
                     NPDPDLRETARAQGWEIQEFRTRRKAAKIGVPSVLGIGVAAGAVAAGLAYHRRPRD"
BASE COUNT          680 a         1209 c         1161 g          658 t
ORIGIN      
        1 cccgcccgtc gacaaggatc accggaaccc gatcgccgta ctcggcccgc agttccggat
       61 ccgtgtccac atcagtggtg tgccacggaa cacccagctc agcgcagata cgcgcgatgt
      121 cctctcgcac cgctgcacag gcgtggcact cctcccgaac cagcaaggtc acttcgtgcc
      181 tcatcctgcc agcgtgccac tccggcaccc ggttcccatg ctcgccccac aaggtcgcct
      241 ccagtcgcgc gcggtgacct tgtacaccgg ttacctactg tgcgcagcac gggaggtgca
      301 cggcgtaacg tgtcgccgtc gtatgcttcc gcacgcctta ttgcgaggag ttgacgcgaa
      361 cggtccctac gagcgaacga ggagtggcta atgccgcaac cgagatggtc ctcagaactc
      421 cggggccggc ccgcgatggc accctgccgt gcgggcggcc cccaagcaga gctgcgccgg
      481 tcgcgccgat cggtgtcaga tcgtgtcgag cgtcaacgcc tgatcgcgtg aagttcgccc
      541 gtcccagcac gccgatccct catccggccg cgccagaatc aagcgccccg gattcgagca
      601 ctggccagga tcaggctgcg gagaccagcg ccgccgagcc cgccggttca gaggtcgaca
      661 ccgccgcgtg ggagctcgtc gcggccgccc agcagggtga tcagaacgcc ttcggtcagc
      721 tctacgaccg gtatgttgat gtagttttcc gcttcgtcct gttccgggtt ggggatcgcc
      781 cgctggccga agatctcacc agcgaaacct tccttcgcgc gctgcgccgg atttcctcgg
      841 tgagctacca gggccgcgat gtgggagcct ggttcgtcac catcgcgcgt aacctggtct
      901 tggaccatgt caagtccagc cgctaccgac tggagatgac cactgcagac atcctcgact
      961 cgagcgcaga cgatcgcggc ccggagcatg aagtggtcga agaggcgact gccaccgagc
     1021 ttatgcggtg cgtcgcccaa ctgggccggg atcagcagga gtgcatcatg ttgcggttca
     1081 tgcagggcct gtcggtctcg gaaaccgccg cgatgatggg ccgcaacgaa ggcgcggtca
     1141 aggcgctgca acatcgcgca gtccgccggc tggcgcagct gctacctgag gggctgcgat
     1201 gactatcaca ctgatccccc gcttgctccg cccgggcgta actacccgac cggccgctcg
     1261 ttgcttccaa ggacaaggct ccggagctcg aaggcggtga ggacgacgcg cacatctggg
     1321 ggacgaccca gcgacggtca ggagcaggat gcttttgccc gcgctgtcga tagcggtatg
     1381 cgcgatgtct ccgatcggag cttgcagcgc gagctcaccg tggtggcaag tctgcgccag
     1441 gtaggtgctg cggctggccc caatcctgcg gaacgggatc ggatgcgcca gcgtgtgatg
     1501 gcggagttcg actctgtggt tcacgagggc aacagccctg tcctgccgtt gcgagcccca
     1561 cgccaacgtc gctggattcc agaccagacc cgaggacggc tggtcgtggc tgcggctgct
     1621 gcgttgtgcc tgctgatgtc gctgtccggg atgagtgtcc tgctatcccg tgatgcgctg
     1681 cccggtgatg cgttgtacag cttcaagcgg accgccgagt ctgctgaact cggattgacc
     1741 ttcggggacc agcccaaggc gctcaagcac ctcgaatttg ccagcgctcg ggtgaacgaa
     1801 atcgagatca tggcagatca ggccgacgcc gccggtaact ggtctgctga gcaggagaag
     1861 ttcctccgcg cccttgaaga cttcgactcg gatgccactg cgggagcgag gctgcttacc
     1921 ggtctcgcct tcaacggtca gcccacgagc ctgtccgcgt tgcgcggctg ggctgagcag
     1981 cagaaaactc ggctagcagc tgttcgcgcc gcgttgacgc ttccgaccgg tgcccgcatg
     2041 gacagcactc tggcactgtt ggatcggatc acgaccagag cttccgcctt gagtcatcgg
     2101 accagctgcg tcacgatcac cactggtacg caggacgagc tgggcgtgtt gccctcgcga
     2161 gatgcatgca agcaggtccc ggtagatgga acctcctcag cggttccgct gccagacgtc
     2221 ccgcctgtgc cacaggtgat tcaacccagc gttgatacac cgcccaacct gctgcttcgt
     2281 ccgccttcag caaatgcggt tccggttccc acccagaatg gcaagggtca gccaaaactt
     2341 ccgggaaccc ggaatccggg tggtgtgctg acaaacccca gtcgccctgg agcggaacca
     2401 ttgcagccgg agccttggcg cccgttgcct gggcaagacg cacccaagcc tgcgaccccg
     2461 ctgcccccgt ggatcctgca gccgagcttg cttccccctg gatagctgta actctcaata
     2521 gatgtcaaac tcagtccacc cgcaggacgc tgcctagatc cttgttgttt ggttgctcga
     2581 gagatgtcgt cacggcattc tggtcagtgg tatccgtttg agcggaacgg ataaagaagg
     2641 gaccagtact ccgatatcag ggcaggatcc agtgccaaga cgcggccatc aggacatccg
     2701 aaatgacgaa gctgccctgg tcacgcttgc cggggaaggc agagccgaag cagcacgcat
     2761 aagcaatgtc gctggagggg tagcggctga gctggggatc gcgcaagatc ttacagcggc
     2821 cgcattcttt gacctcgaca acaccatgat gaggggcgca tcagtctttt acttcgccca
     2881 gggcctagct gcgagaaact ttttcccggc cggagcgctc gcgtccatcg catggcagca
     2941 gctgagattc agggtaggcg gcaaagagct cagtcccgag gaaatccgca ccagccgtga
     3001 gcaggcacta tcgttcgtcg ctggaagatc tacccggcag ttcgtggagc ttggcgaggt
     3061 catctacgac gagctgatgg ctgaacggat ttggtctgaa acgcttgcgt tggcacagat
     3121 acacatcgag gccggtcagc gggtctggct ggttaccgcg actccagtgg aactggccac
     3181 gatcatcgct cgccggctcg gcctcaccgg tgcgctgggt accgtcgcag agaccgtcga
     3241 cggtgtgtac accgggcggc tggtcggcga catcctgcac ggtgcagcca aggcaaaggc
     3301 ggtacgggcg ctcgccatca gagagggcct cgacctgcag ctctgcacgg cgtactcgga
     3361 ctccgccaac gacattccga tgctgtcgat ggtcggcact gcggtggcgg tcaatccgga
     3421 tccagatctg agggagaccg cccgcgcaca aggctgggag atccaggagt tccggacccg
     3481 tcgcaaggcc gcgaagatcg gggtcccttc ggtgcttggt atcggagtgg cggctggcgc
     3541 ggtcgccgca ggtctcgcct accaccgccg tccccgcgac tagcaccacc ccgtttccac
     3601 ccctacacgg agcacaaagg cgcgacacac cgagcacgaa ttccgcctcg atgagaaccg
     3661 cccggaacgg cactcctcaa ggcgtgcacc accatatcca cctgcgca
//
LOCUS       DASVXZ010000162         2977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_107395, whole genome shotgun sequence.
ACCESSION   DASVXZ010000162 DASVXZ010000000
VERSION     DASVXZ010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2977
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107395"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            423..922
                     /locus_tag="VF788_03250"
                     /pseudo
     CDS             423..922
                     /locus_tag="VF788_03250"
                     /inference="COORDINATES: protein motif:HMM:NF037084.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1227..1805
                     /locus_tag="VF788_03255"
     CDS             1227..1805
                     /locus_tag="VF788_03255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933210.1"
                     /translation="MDVVVENVGGSTLVEAWTTLAPGGVLQSIGWTSGEPAVLPVYGT
                     VGPAKSLVSFQAGIGFGADLEYDHDAGGKAALRTPIRFCADGVDAGVARSVSSYVSGR
                     SKRRWSHLVDPLRSGGAMIDLRYQMIMALSAADFGNPVCEQAAAICAEIAEQYCAQLH
                     ITRTAPVIASEDVMTTEPARVKGRDSAAVRRS"
     gene            1805..2584
                     /locus_tag="VF788_03260"
     CDS             1805..2584
                     /locus_tag="VF788_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX8933211.1"
                     /translation="MTQTTEPLPPTVDIRRKDERFKTRLSWLDSKHSFSFSRHYDPSN
                     THHGLLLVNNDDIVSPGTGFDTHPHQDMEIVTWVLQGSLVHQDSTGHAGIIYPGLAQR
                     MSAGTGILHSEKNDSWRMQGGSEHNESVHFVQMWVVPDEGGIPPGYEQLEIEDDLLRG
                     GLAPVASGMDKHHGASAIQIKNKYAALYAARLHPGDMIELPEAPFLHLFVPRGAVTLE
                     DAGSLTTGDAVRFTATGGQKVTATEPAEILVWEMHAALTGW"
BASE COUNT          521 a          956 c          974 g          526 t
ORIGIN      
        1 ggacacgccc gaattgaagt gtccataact ctccgagttg aggacacttc aattggtgtc
       61 cgaaattgcg cgggcgtcca cgcttcgtcg gccgggctcc tcgaacagct gcggagcgta
      121 aatacctggg cgagaggcaa gaaaatgagt ggaatcggcg tcgacacgct ccccgttctg
      181 ccgaccgatc cgggcgaccg caaccggacc agtcccttcg cgttcaccgg caatcggttc
      241 gagttccgcg cgccaggctc gatgcagacg gtcgccggcc cgatggtcat gatcaacacc
      301 atcatggccg aggctctcga ttactgtgca agccagctcg agacggcggt ggcggcgggt
      361 accgagtcga caccgcggtg caaaacctgc tcacggagat catcaccacc cacgccgccg
      421 tcgtgttcaa tggtgacgga tactccgaca agtggcagat cgaagcggct gagcggggct
      481 gccgaacctg cgcaccacgc tcgacgccct gcccgagctc atcaccgagc cgtcgatgga
      541 actcttcgag cgctacaagg tgttcaaccg tcgcgagatg cacagccggt acgagatcgg
      601 cctggagcac tacgtactgg ccatcggcgt tgaagcccgt ctgacacttg agatcggctc
      661 gaccttgatc cttccggccg ccgttcgcta ccagacaggg ctggcgctca acctcggcgc
      721 cctcaaggcg gccggcgtcg agacggacac ttcgacgctc accgcggtca ccacgccgct
      781 cgccgacctc cgggcagcgc tgagcgacct caagaccgct ctcgcggcgc acacgggaga
      841 ccgcgctcgc ggaggccgag cacgcccgcg atgcactgtt gcccgccatg gccgcggtgc
      901 gatcggccgc cgacctgctt gaagggatcg tcgccgatga tctctggccg ctcccgacgt
      961 accaggaaat gcttttcatc ctctagccac gtggtgaccc taccggcgcc ggcgcgaggg
     1021 acgaaccagc gaaacgggct ccggtgcgca gtgccggcgg ccgagctggc ggtggtgccg
     1081 gcgtcggtgg acctggcggt ggctgccgtg ctgccggtgg tgggggtgac cgcgctgcgt
     1141 gcgctgcgtc gttccggcgc gctgttgggc cgccgggttc tggtcaccgg cgcctccggc
     1201 ggggtcggcc ggacgggctg gacccggtgg acgtcgtggt ggagaacgtc ggcggcagca
     1261 cgttggtcga agcgtggacc acgctggcgc ctggtggcgt gctgcagagc attggctgga
     1321 cgtcgggcga gccggccgtg cttcctgtgt acggcaccgt cgggccggct aaatcgctgg
     1381 tgtcgttcca ggccgggatc gggttcggtg ctgacctcga gtatgatcac gacgctggcg
     1441 ggaaagctgc cttgcgcacc cccatccgat tctgcgccga tggcgttgac gcgggtgtcg
     1501 cgcgtagcgt gtcgtcgtac gtatcggggc ggtccaagag gcgctggagc caccttgtgg
     1561 accctctacg ctctggaggc gccatgattg atctgaggta ccagatgatc atggcgctca
     1621 gcgctgctga cttcggaaac ccagtgtgtg agcaggcagc ggcgatctgt gccgagatcg
     1681 ccgagcagta ctgtgcccag ctgcacatca caagaaccgc gcccgtcatc gcatccgagg
     1741 atgtgatgac caccgagccc gcccgtgtga agggtcgcga ctcggctgct gtgcgcaggt
     1801 catgatgacg cagacgaccg agccgttgcc gccgacggtg gacatccgcc gtaaagacga
     1861 acggtttaag acccggttat cgtggttgga ctcgaagcat tctttctcgt tctcccgtca
     1921 ttacgacccg agcaataccc atcacggtct gctgttggtc aacaacgatg acatcgtgag
     1981 cccgggcacc ggattcgata cgcatcccca ccaggatatg gagatcgtga cctgggtatt
     2041 gcagggctcg ctggtccacc aggactccac cggccacgcc gggatcatct atcccgggct
     2101 cgctcagcgc atgagcgccg gcaccggtat cctgcactcg gaaaagaacg attcctggcg
     2161 gatgcaaggc ggatctgaac acaacgagtc tgtacacttc gtgcagatgt gggtcgtgcc
     2221 cgatgaaggt ggtatccctc ccggttacga acagctagaa atcgaggacg acctgctgcg
     2281 cggcggcctg gccccggtcg cgtccggtat ggacaagcac cacggtgcat ccgccatcca
     2341 gatcaagaac aagtacgctg cgctgtacgc agcccgcctg catcctggcg acatgataga
     2401 gctgcccgag gcgccctttc tgcacctgtt tgttccccgc ggtgctgtca cgcttgaaga
     2461 tgccgggtcc ttgactactg gcgacgcggt gcgattcacc gcgaccggtg ggcagaaggt
     2521 caccgccacc gagccggccg agattctggt atgggaaatg cacgctgccc tcaccggctg
     2581 gtaaaatcac cgccctgccg attccgcgac ctcggtatgc cgctgcggcg ttgaccctac
     2641 ccggataaga agatccaagc cggcagacga cggccggtgg agtcgatggg cgggatgcgg
     2701 tcgtcatctc cctgcatcat cagcctcagc ggatgctcgt agtcggcgat gccagcgtca
     2761 tccacaccag caggacgccg ctttccggta gagccgctgc accactttag ccgctggcag
     2821 ctcgacatcg gtccctcgga cgatgtcgag ggcactgttg caacgaaggt gacacgtccg
     2881 ggcggtctag ctggagcgtc agctggggcc cacggagtcc tggtactgcg gcgcattggc
     2941 cccgcacagg tcatggtgca ggggctgtgc tgaaagg
//
LOCUS       DASVXZ010000163         3501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_107456, whole genome shotgun sequence.
ACCESSION   DASVXZ010000163 DASVXZ010000000
VERSION     DASVXZ010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3501
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107456"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1017)
                     /locus_tag="VF788_03265"
     CDS             complement(<1..1017)
                     /locus_tag="VF788_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase family protein"
                     /protein_id="HEX8933212.1"
                     /translation="MSESEGTGTHQSLPWLAPGCVLGRGRYRLLSEVGRDDRCAVLLW
                     RGRDMVLDRDVALSVFIAAPQDSAALIQIRSTVARALRCARLETAGAARVLDVLEPER
                     TDAGVVVAVVVAEWTPGWALVELLEGGPLPPSMAARVLVPLAGAVDVAHSAGLVLGVD
                     HPGRIRVAPDRQARLAFPGPPPTTGSRDDIRGLGAMLYLLLTGCWPLRDGLTSLPPAP
                     LGPDGSPISPTTLRPEVPVELSTLALRSLAGSGTAGGVHTGAAVRQVLELNAAGADDL
                     FSVDGRPIDPQRAQRLRRRNFRLSMTVLAAATLMIIGYAGVQVVSIFTDTGGAPLVVA
                     GSAPA"
     gene            complement(1143..2768)
                     /gene="murJ"
                     /locus_tag="VF788_03270"
     CDS             complement(1143..2768)
                     /gene="murJ"
                     /locus_tag="VF788_03270"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEX8933213.1"
                     /translation="MSSDGRPSGPAPEGPPGNGPRNEHSRRSQYSLLSATRTMALATL
                     VSRITGFLRQLGLAAVLGLGVVNDSYTVSNTLPAMLYEILLGGVLTSVIVPLLVRAAK
                     EDADQGQAYVQRLVTVAFVALSAASVLALVAAPFLAVLFLGSGEDANPQLATMFGYLL
                     LPLILFYGLSGLFGAILNARSIFGPPAWAPVLNNVIVLVSLGVYALVPGEISLNPARL
                     SDPKLLVLGLGTTAGIVAQALVQVPGLRRAGFHFGWRWGWDSRLTQASGMAAWFVVYV
                     LVGQLGFLVTTRSAAQGDPGGVVIYSLVWLLLQLPYGVLGYSLLTAIMPRMSRAAADS
                     DWRGVVEHLSVGSRYLILLLVPITVVFTLAGEQIGVALFSLGRAGSNAERLGVALAVS
                     AFGLLPYAVTMLQLRVFYSMADARTPTMINAVMVAVKLPLLLACPVFLDDADVVLGLT
                     AANSLSLVVGAMVGQTWLRRRLGRVETKRSLITFRNCVIGAAPAVAAVLGLRAVTDWT
                     GVSGAWLDLVFTTLIVAVVMGTALLILRTPELT"
     gene            complement(2796..>3501)
                     /locus_tag="VF788_03275"
     CDS             complement(2796..>3501)
                     /locus_tag="VF788_03275"
                     /inference="COORDINATES: protein motif:HMM:NF039636.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6049 family protein"
                     /protein_id="HEX8933214.1"
                     /translation="EASAREIPAQVTAEVTRDRDVLRDLQVATVLDPAANLRPATLLD
                     PLRLGLLSGTSTAWREAPNRAIQITAGESTRLDELRRSVRIVAPPGPYSLAASDSPLL
                     ITVSNELPVGVQVELSLSETSGLRAGAVGLQLVPARSTRQLVIPAKVSRAGQFSVDAA
                     LSTPGGTPLGEPSTLQLRSTAFGRITVALTAGAGALLVLLVARRLTRRLCRKPPAEPA
                     NGPPPAEPAIGPREAG"
BASE COUNT          627 a         1242 c         1162 g          470 t
ORIGIN      
        1 ggccggggca ctcccggcga cgaccaacgg cgccccaccg gtgtcagtga atatcgacac
       61 cacctgcacg cccgcgtaac cgatgatcat cagcgtggcc gcggccagca ccgtcatcga
      121 caagcgaaag ttcctccggc gaagacgctg tgcgcgttgc gggtctatcg gacggccgtc
      181 taccgaaaac aaatcgtcag cacccgcggc gttgagctcg agcacctgcc gcacggcggc
      241 cccggtgtgc acgccaccgg cggtgccgga acccgcgagg ctgcgcagcg ccaacgtcga
      301 gagctccacc ggtacctcgg gccgcagtgt ggtggggctg atcggggagc catccggacc
      361 cagcggcgcg ggcggcaggc tggtcaaccc gtcgcgcagc ggccagcatc cggtgagcag
      421 caggtacagc atcgcaccga gtccgcggat gtcgtcccgg gatcccgtgg tggggggcgg
      481 tccgggaaag gcgagccggg cctggcggtc gggcgccacc cggatccgac ccggatggtc
      541 aacgcccaga accaggcctg cactgtgcgc aacgtcgact gcgccagcca gcggtaccag
      601 cacgcgagcc gccatcgatg gcggtaatgg cccaccttcc aggagctcga ccagggccca
      661 acccggcgtc cactcggcga cgacgacggc gacgacgacc ccggcgtcgg tgcgctccgg
      721 ctccagaaca tcgagcaccc gcgccgcgcc cgccgtctcc agacgagcac accgcaatgc
      781 ccgcgcgacg gtcgagcgga tctggatgag cgccgccgag tcctgcggtg cagcgatgaa
      841 cacactcagc gcgacgtcac ggtccagcac catgtcacga ccgcgccaca ggagcaccgc
      901 acagcggtcg tcgcgaccga cctcggagag caggcgatac cgaccccggc cgagcacaca
      961 tccgggagcg agccacggaa gggactggtg tgttcccgtc ccctccgatt cgctcaccgt
     1021 gacgtcactc tttctgggtg tctcttcgga catttcgtca acaattgtca agcctacggc
     1081 tcctgagggc cagcggagcc gccattacgg ctcaggcggt tgcgtaccgt cacccgaaac
     1141 gcctaggtca gctctggagt gcgcaggatg agcagcgcgg tgcccatcac cactgcgacg
     1201 atcaacgtgg tgaacaccag gtcgagccag gcgccgctga ccccggtcca gtcggtcacc
     1261 gcgcgcagcc cgagcaccgc ggccaccgcc ggcgccgccc cgatcacaca attgcgaaac
     1321 gtgatcaggc tgcgtttggt ctccacccga cccagccgcc ggcgcagcca ggtctgcccg
     1381 accatcgcgc ccaccaccaa ggacagggaa ttggccgcgg tgagaccgag caccacatcg
     1441 gcgtcgtcga ggaacactgg gcaggcaagc agcagaggca gtttcaccgc caccataacc
     1501 gcattgatca tggttggggt gcgcgcgtcg gccatcgaat agaaaacccg cagttgcagc
     1561 atcgtcaccg catagggcag cagcccgaag gcggataccg ccagtgcgac cccgagccgc
     1621 tccgcgttgc tgcctgccct tcccagcgag aacagggcga ccccgatctg ctccccggcg
     1681 agggtgaaca ccacggtgat cggtaccagc agcaggatga ggtagcggct gcccaccgag
     1741 aggtgctcga cgacgccgcg ccagtccgaa tcggccgcgg cccggctcat tcgcggcatg
     1801 atcgcggtga gcagtgagta acccaagacg ccgtaaggca gctggaggag taaccacacc
     1861 aggctgtaga tcaccactcc gccgggatca ccctgcgctg cggagcgggt ggttaccagg
     1921 aagccgagtt ggcccaccag gacatacacc acgaaccagg cggccatccc gctggcctgg
     1981 gtgagccgtg agtcccagcc ccaccgccaa ccgaagtgga agccggcccg gcgcaggcca
     2041 ggtacctgca ccagcgcctg cgcgacgatg cctgccgtcg tgcccagacc cagcaccagc
     2101 agcttcgggt cactcagtcg cgccgggttg aggctgattt ctccaggaac cagggcgtag
     2161 acgcccaggg acaccagcac gatgacgttg ttgagcaccg gtgcccaggc cggtgggccg
     2221 aagatgctgc gggcattgag gatcgccccg aacagaccgg acaggccgta gaacaagatc
     2281 agtggaagta gcaggtagcc gaacatcgtc gccagctgag ggttcgcatc ctcgccggaa
     2341 ccgaggaaca gcaccgcgag aaacggtgcc gccaccaggg cgagcacgct ggccgcgctg
     2401 agtgccacga acgcgacggt caccaaccgc tgcacgtagg cctggccctg gtcggcgtcc
     2461 tctttcgccg cgcgcaccag cagcggcacg atgacgctgg tcagcacccc gccgagcagg
     2521 atctcgtaga gcatcgccgg cagcgtgttg gagaccgtgt aggagtcgtt gaccaccccg
     2581 agccccagta cggcggcgag cccgagctgg cggaggaatc cggtgatccg gctgaccaga
     2641 gtggccagcg ccatcgttcg agtcgccgag agcagcgagt actgcgaccg ccggctgtgt
     2701 tcgtttctgg gtccgttgcc gggcgggccc tcaggcgccg gcccgctggg ccggccgtcg
     2761 gacgacactg gcgtgcggtt cgcggtgtcc aatcctcacc cggcttcccg tggtccgatt
     2821 gccggctcgg ccggcggtgg tccgtttgcc ggctcggccg gcggtttcct gcacaaccgg
     2881 cgcgtaagcc ggcgagccac cagcaggacc agtaacgcgc cggcacccgc ggtgagcgcg
     2941 actgtaatcc tgccgaacgc cgtcgagcgc agctgtaggg tgctcggttc acccagcgga
     3001 gtgccgcccg gggtgctcaa ggcggcatcg acgctgaact gaccggcccg gctcaccttc
     3061 gcggggatca ccagctgcct cgtgctgcga gctggtacca gctgcaaccc gaccgccccg
     3121 gcccgcagcc cggaggtctc cgacaggctc agttccacct ggaccccgac cggtaactca
     3181 ttgctcaccg taatcagcag cggggagtcc gacgcggcca agctgtaagg gccgggtggc
     3241 gcaacgatcc gcaccgaccg acgtagctca tcgagccggg tgctctcccc cgcggtgatc
     3301 tgaatggccc ggttgggtgc ctcgcgccac gctgtcgacg ttccagagag cagcccgagc
     3361 cgcagcgggt cgagcagagt cgccggcctg aggttcgcgg cgggatccag gaccgtggcc
     3421 acctggagat cacgcaggac gtcccggtcc cgggtgacct cagcggtgac ctgtgccggg
     3481 atctcccgcg cgctggcctc g
//
LOCUS       DASVXZ010000164         2534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1443283, whole genome shotgun sequence.
ACCESSION   DASVXZ010000164 DASVXZ010000000
VERSION     DASVXZ010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1443283"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            782..1573
                     /locus_tag="VF788_03280"
     CDS             782..1573
                     /locus_tag="VF788_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8933215.1"
                     /translation="MPLMPADVHNIAFSKPPIGKRGYHEDEVDAFLERVEAELARLIE
                     ENNDLRDRVEQRDQQRAAPVGTGVSSRLPEPPRSVMPPAPPPMREQDSPAGDHNVHVA
                     KVLGLAQELADRLTRAAKAEAEGMVSEARTTAEQLLCEARPKADGVVNEARSRAETLL
                     NDARTRAETLDRKSREKAASLERDAARRYTESIAVLSQEKSMLEKKIEDLRVFERQYR
                     IHLKTYLDSQLRELDGCRSAAPADTVPAEHGLVTAGSGMHSETHG"
     gene            1601..>2534
                     /locus_tag="VF788_03285"
     CDS             1601..>2534
                     /locus_tag="VF788_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8933216.1"
                     /translation="MSLVGRVIGTEDSTPLLFSVALAQDSYLQLDDVVVTVRAVPGVG
                     PVMTSGVVTQVRSRHEGANFGSDVFLIADGVLPAQVQEIAEVTTTRVEPECYVPPRPG
                     EPARRATGEERAQALYFDRMAQKIPVGLGRDGDPIYVNLEFLDGTRGGHVSISGVSGV
                     ATKTSFALFLLNSIFRSGALGRRTINAKALVFSVKGEDLLFLDHPNTRLDDELRGDYA
                     RLGLPAEPFASVGFFAPPTPEDLSGRPYVAGRTSGVTAFWWTLAQFCADELLPYVFAD
                     AEDERNQYTTVIHQVANRLRRDATATGEGGAIAIE"
BASE COUNT          432 a          829 c          847 g          426 t
ORIGIN      
        1 atctcaactc catagagctg gcggtctcgc cgcatgtcgt gggtttcccc cgcatccacg
       61 agagctgagt agccgtcagg tggctggtga accggcgaac gtccgtgccc ccgaccgaga
      121 tgtcgagcgg gtcaccggcc acaccagaat tcccccgggt cggcgcagca cgccggagcg
      181 tcgacccggg gagtgcacaa tcccggtcag ggcaccgcgc gctcgccggg cacaactcca
      241 cagtttggac ccattccgct tctcacccga gtggagtgcc gcgccggtgg cagcgtcgtc
      301 tcctgagcga ccgtcaccgt caccgctggt ctgatgccgc cggatttcca ccgccggtgc
      361 cctggtgcac cggaggctag gaggttcccc gtctggcgcc ggacgcgtgt gcagcgcagg
      421 cacccgcaga gtggggtggg gccgttgctt cgagaacggc cccacccccc cacaattctg
      481 ctccgcggga tcgccggtcg agtgcaagac caacgcagcg acatctgatg gtgatcctgt
      541 ccaggcagca cacgaggatc gcacgtcaag acgttgcatc gagttttcga gccccaccgg
      601 gcatacccct tggcatcgga gaagttggct ggatctaggt ctgcggttcc gttgctcgtg
      661 gtttcttctg aatgccagcg gtcgattgga caccgtcgtg gccgccgggc tcgttaggac
      721 ccaggtacca ggccggtaca ccgggcccaa ggtgccaggt gaggagtgcg taggtgatcc
      781 gatgccgttg atgcccgctg atgttcacaa catcgcgttc agtaagccgc cgatcggcaa
      841 gcgcggctat cacgaggacg aggtggacgc cttcctcgaa cgtgttgagg ccgagctggc
      901 tcgattgatt gaggagaaca atgatctccg tgatcgggtt gagcagcgcg atcagcagcg
      961 cgctgcgccg gtcggcaccg gagttagctc tcgcctgccg gagccacctc gctcggtgat
     1021 gcccccggcg ccgccgccga tgagggaaca ggactcgcca gctggggatc acaacgttca
     1081 cgtcgccaag gtgctgggct tggcccagga actggctgac cggttgactc gtgcggccaa
     1141 ggctgaagcg gaggggatgg tgagcgaggc ccggaccacc gccgagcaac tgctctgcga
     1201 ggcccggccg aaggccgacg gtgtggtcaa cgaggccagg agccgggccg agaccttgct
     1261 caatgacgcc cgtaccagag ccgagactct ggaccggaag tctcgggaga aggccgcatc
     1321 gctggagcgt gatgcagcac gcaggtacac cgagagcatt gctgtgctga gccaggagaa
     1381 gagcatgctg gagaagaaga tcgaggacct gcgcgtgttc gagcggcagt accgcatcca
     1441 cttgaagacc tacctggact cacagcttcg agaactggac gggtgccgat cagccgcacc
     1501 agcggacacc gtgccggccg agcacggctt ggtgactgcc ggctccggca tgcattccga
     1561 aacccacggt tgatgctcgg tcaacgggcg agctgacccc atgagccttg taggccgcgt
     1621 tatcggcacc gaggactcca ccccgctcct gttcagcgta gctcttgctc aggattccta
     1681 tctgcagctc gacgacgtgg tggtcactgt ccgggccgtt cccggggtgg gaccggtgat
     1741 gacttccggt gtcgtgaccc aggtccggtc ccggcacgag ggcgccaatt tcggctcgga
     1801 cgtattcttg atcgctgatg gagtgcttcc tgctcaggtg caggagatcg ctgaggtcac
     1861 cacgactcgg gtcgagccag agtgctacgt cccgccgagg cctggggagc cggcgcggcg
     1921 ggccaccggt gaggaacgtg cgcaggcgct gtacttcgac cggatggccc agaagatccc
     1981 ggtggggctg ggccgcgacg gtgacccgat ctacgtcaac ctcgagttcc tcgacggcac
     2041 ccgcggcggc cacgtctcga tcagcggcgt ctccggcgtg gcgaccaaaa ccagcttcgc
     2101 cctgttcctg ctcaactcaa tcttccgcag tggtgcgctg ggccggcgga cgatcaacgc
     2161 caaggcgctg gtattcagcg tcaagggcga ggatctgcta tttctggatc acccgaacac
     2221 ccggctcgac gacgagctgc gcggcgacta cgcccggctg ggcctgcccg ccgagccgtt
     2281 cgcgtccgtc ggcttcttcg ccccgcccac gccggaggat ctcagcgggc gcccgtacgt
     2341 cgccggccgt accagcgggg tcaccgcttt ctggtggacg ctggcccagt tctgcgccga
     2401 cgagttgctc ccctacgtct ttgccgacgc cgaggacgag cgcaaccagt acacgacggt
     2461 catccaccaa gtcgccaacc ggctgcgacg cgacgccacc gcgaccggcg aggggggagc
     2521 gattgcgatc gagg
//
LOCUS       DASVXZ010000165         7219 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_546832, whole genome shotgun sequence.
ACCESSION   DASVXZ010000165 DASVXZ010000000
VERSION     DASVXZ010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7219
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546832"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1121)
                     /gene="cysS"
                     /locus_tag="VF788_03290"
     CDS             complement(<1..1121)
                     /gene="cysS"
                     /locus_tag="VF788_03290"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005441600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX8933217.1"
                     /translation="MSLHLYDSATRSVREFVPLRPRTASIYVCGATVQGVPHIGHVRS
                     ALNYDVLRRWLMATGHDVMFVRNVTDIDDKILTKAAEAGRPWWEWAYTHERAFEDAYN
                     ALGCLPPSVLPRATGHTPQMVALMARLIDRGHAYAAGGDVYFAVATFDDYGCLSGQRL
                     DEMSQGESAASGKRDARDFTMWKGAKPGEPYWPTPWGPGRPGWHLECSAMATTYLGAE
                     FDIHGGGLDLIFPHHENERAQSRAAGDEFARYWLHNGWVTLSGEKMSKSLGNTLSIPA
                     TLRRVRAVELRYYLISAHYRSAIEYSDGALDEAVTAYQRIESFVHRVRERCGVPESSV
                     WPAEFVAAMNDDLGTPAALAAIHACVREGNTALDAGDHNA"
     gene            complement(1202..1666)
                     /gene="ispF"
                     /locus_tag="VF788_03295"
     CDS             complement(1202..1666)
                     /gene="ispF"
                     /locus_tag="VF788_03295"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEX8933218.1"
                     /translation="MRVGIGTDVHPVQSGRDCWIAGLHWPGLPGCAGHSDGDVAAHAL
                     CDAALSAAGLGDLGAVFGTGELRWAGAHGADLLIEVRHRLASEGWMVANGAVQVIGNA
                     PRVGTRRAEAQQVLSDALGGPVSVSGTTTDGLGLTGRGEGIGAVATVLLLRA"
     gene            complement(1663..2337)
                     /gene="ispD"
                     /locus_tag="VF788_03300"
     CDS             complement(1663..2337)
                     /gene="ispD"
                     /locus_tag="VF788_03300"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEX8933219.1"
                     /translation="MAVVPAAGRGVRLAAGMPKAFVPLLGRPLLWYCVQGLLAAGCVE
                     RVVVAVGEQHHDQARVALGEAGDLVQIVTGGVHRSDSVQAALERVPDAEVVLVHDAAR
                     CLTPVSVIHAVAHAVLAGQQAVVPVLAVVDTIKQVDSEDCVVSTLDRAALRVVQTPQG
                     FAGELLRRAHSEASGPMTDDAGLVEALGVPVITLPGHPHAFKITTQFDLAVAEVIAGA
                     RATGLA"
     gene            complement(2409..2897)
                     /locus_tag="VF788_03305"
     CDS             complement(2409..2897)
                     /locus_tag="VF788_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007528440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HEX8933220.1"
                     /translation="MAFKVGETVVYPHHGAALIEAIETRVIKGEEKKYLVLKVAQGDL
                     TVRVPAANAEFVGVRDVVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVN
                     KVAEVVRDLWRRERDRGLSAGEKRMLAKARQILVSELALAEGTNEDNAEVLLDEVLAA
                     AS"
     gene            3108..3656
                     /locus_tag="VF788_03310"
     CDS             3108..3656
                     /locus_tag="VF788_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEX8933221.1"
                     /translation="MRVSLSVAARRMACCAAVLALVGCSAGQITQTDSQVSAVNGANG
                     NVGSTIALRDVLIPYPSSPDGTYRAGSTVPVLLTIINQGTSADQLIGVASPAAGQAVV
                     LGTTQIPPGTNVISTAGTAPAPGEPVSPLVVGELRIVLTTTAPLRAGLNIPVTFQFRN
                     AGKLTLPVPMAAPPGQPSNSAG"
     gene            complement(5180..>7219)
                     /locus_tag="VF788_03315"
     CDS             complement(5180..>7219)
                     /locus_tag="VF788_03315"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEX8933222.1"
                     /translation="LPAEYLDDPRIQQVLGQAQQVRGQWAQAMHHYRHASDKQDELEP
                     ALSWRLGMLAFAQGEFAEVHALTERTRLDREDTLDETRVLSLAASAHRMTGDLVNMRK
                     IARQTRAAARRCDDPRAWTTVHNMFTLLAAAEGDWRQANAHCAEALRTAEATGDLLQL
                     TWTRTSRAFHYFEAGSPRRALAEAGVGLKLSERIEDPFFTAHCLTTRGRARSRLGMLD
                     PAAVDFSTAIELFQRIGSRFLAWPLCGVGDLHRTRGQLVRAQAVYEEALSIAEPCRDV
                     FGLSSALIGLARIGATDDLELAREFAARAVALGEGLRRIPAFLARGWVELMGSDRQLA
                     SADAARAAAVARQRRDNPGLAEAITLSVLAASESVVDAAPLREAIDIWQETGCRLEEA
                     ATRVVAAHIGSPIPRVDGDVADQLLRDHGVDVESRRVAGPLGVLGHFTPAVSVQTLGT
                     FRVIRDGAPVPTLEWRSKKARDLLKILVTRRRPIPRGQLMELLWPEVDPAVAGNRLSV
                     LLSALRDVLVTRSASEGPLLTTSGSVSLNRALISVDVDDFLDRASAALDADRAGESDA
                     IARLEAAVAAHTGGFLEEDPWQEWAGALAEEVRGSYIALLRALAARLREAGDADAAVR
                     YLLRVLQQDCYDEAAHLDIVRTLCEAGRLGEARRHYESYVRRMAEISVPPRPLPG"
BASE COUNT         1346 a         2443 c         2245 g         1185 t
ORIGIN      
        1 gcattgtgat ctcccgcgtc caaggctgtg ttgccttcac gcacgcatgc gtggattgcg
       61 gccaacgctg ccggcgtgcc gagatcgtcg ttcatcgccg cgacgaactc ggcgggccac
      121 acgctcgact ccgggacacc gcagcgctcc cgaacgcgat ggacaaacga ctcgatccgc
      181 tgataggcgg tcactgcctc atccagggca ccatcggagt actcgatggc agagcggtaa
      241 tgcgcgctga tcaggtagta gcgcagttcc accgcccgga cccggcgcag ggtagcgggg
      301 atcgacaggg tattgcccag cgacttggac atcttctcgc cggaaagcgt gacccagccg
      361 ttgtgcagcc agtaccgggc gaactcatca ccggcggcgc gggactgggc gcgttcgttc
      421 tcgtggtgcg ggaagatcag atcaagcccg ccaccgtgga tatcgaactc tgcgccgaga
      481 taggtggtgg ccatcgccga gcactccagg tgccatccgg ggcgaccggg cccccacggc
      541 gtcggccagt acggttcgcc gggcttggcg cccttccaca tcgtgaaatc ccgggcgtcg
      601 cgcttacccg acgcggcgga ctcaccctga gacatctcgt cgagacgctg tcctgacagg
      661 cagccgtagt catcgaaggt ggccaccgcg aagtagacat cgccacccgc ggcgtaggcg
      721 tgcccccggt cgatgagccg ggccatcagc gcgaccatct ggggcgtatg gccggtggcg
      781 cgcggaagca ctgagggcgg caggcaaccc agcgcgttat aagcatcctc aaaggcgcgc
      841 tcgtgggtgt aggcccattc ccaccagggt cggccggcct cagcggcctt ggtgaggatc
      901 ttgtcgtcga tgtcggtgac gttgcgcacg aacatcacgt cgtggccggt ggccatcagc
      961 cagcgacgca gcacgtcgta gttcagcgct gaacggacgt ggccgatgtg cgggaccccc
     1021 tgcaccgtgg caccacagac gtagatcgac gccgtgcggg gcctcagcgg gacgaactcg
     1081 cgcacgctgc gcgtggcgct gtcgtaaagg tgcaggctca ctccaataat ggtacggggg
     1141 cccttccggc accgaacggc gcgtcgatca cccccggcgg ggcccggaca gtttcctcga
     1201 atcacgcccg cagtagcagt acggtggcta ccgcgccgat tccttcgccg cggccggtca
     1261 gcccgaggcc gtcggtggtg gtgccggaca ccgagaccgg gccgcccaag gcgtcggaga
     1321 gcacctgctg cgcctccgcg cggcgggtgc ccacccgcgg cgcattgccg atcacctgca
     1381 ccgcgccgtt ggccaccatc cagccctcgc tggccaacct atggcgcacc tcgatgagca
     1441 aatcggcgcc gtgcgccccg gcccaccgca actcgccggt gccgaacacc gcacccaggt
     1501 cacccaagcc ggcggcggac agcgccgcgt cgcacaatgc gtgcgcagcg acgtcaccat
     1561 cggagtgccc agcgcagccc ggtaacccag gccagtgcag cccggcgatc cagcagtccc
     1621 ggcctgactg caccggatgg acgtcggtac cgatccccac cctcatgcca gaccggtggc
     1681 tcgtgccccg gctatgacct cagcgacggc gaggtcgaac tgagtggtga tcttgaaggc
     1741 gtgtggatgc cccggaagtg tgatcacggg tacccctaac gcctcgacaa gcccggcgtc
     1801 atcagtcatc ggccctgatg cctcgctgtg cgcccgccgc aaaagctctc cggcgaaccc
     1861 ctgcggagtc tgaacgaccc gcaacgccgc gcggtccagc gtactgacga cgcaatcctc
     1921 ggaatccact tgcttgatcg tatcgaccac ggcgagcacc ggcaccaccg cttgctgccc
     1981 agccagcaca gcatgcgcca ccgcgtgaat cacgctgaca ggtgtgaggc aacgcgcggc
     2041 gtcgtgcacg agtacgacct cggcatcggg cacgcgctcc agcgcagctt ggaccgagtc
     2101 ggaacggtgc accccaccgg tgacaatctg caccaggtcc ccggcctcgc cgagggcgac
     2161 tcgagcctga tcatggtgtt gctcgccgac agcgaccacc acccgctcga cgcagccagc
     2221 ggccagcaaa ccctgcacgc agtaccagag cagcgggcgc cccagcagcg gcacgaacgc
     2281 cttcggcatt cccgcggcca accgcacacc ccgccccgct gccggcacga cagccacaac
     2341 acggctgggc gaggcaggga tcggtgacgt cgtcagcgcc taggacccgg gttctaccag
     2401 accgcgactc aggatgccgc ggcgagaact tcgtcgagca atacctcggc gttgtcctcg
     2461 ttggtgccct cggcgagtgc gagctcactg accagaatct ggcgagcctt ggcgagcatg
     2521 cgtttctcac cggccgataa accgcgatcg cgctcgcggc gccagagatc acgcaccact
     2581 tccgccacct tgttgacatc gccagaggcg agcttttcca agttggcctt gtaccgtcgc
     2641 gaccagttcg tcggctcctc ggtgtgagga gcacgcagca cctcgaaaac ccgatcgagg
     2701 ccctcttgac cgaccacgtc ccggacgccg acgaactcgg cattggcagc gggaacgcgg
     2761 acggttagat caccctgagc gactttgagg acgaggtact tcttctcctc gcccttgatc
     2821 actcgagtct cgatggcctc aatgagagcg gcaccgtggt gcgggtagac gacggtctct
     2881 ccgaccttaa acgccatgtg tcctctgccc ctttcgctgt aaccaggtta ccacggcggg
     2941 aaatcgtggt gcgcggggta tcaggcgtgt cgtcgcaggt caggggttcc gactatcgac
     3001 tggcagcggg cggctcggtg ttccgcagct cacagtcact ccactatgga cctgtctgtg
     3061 ccgagacgcc gcgcctgctg gatgggccgg tcggttacgc tttgaccatg cgggtttccc
     3121 ttagcgtcgc ggctcgcagg atggcgtgct gtgcggccgt actggctctc gtaggctgca
     3181 gtgcgggtca gatcacccag accgatagcc aggtgtccgc cgtcaacggg gccaacggca
     3241 acgtcggaag caccatcgca ttgcgcgacg tgctgatccc ctacccgagc agtcctgatg
     3301 gcacctaccg cgccgggtca accgtgccgg tgctgctcac catcatcaat caaggaacca
     3361 gtgctgacca gctgatcggc gtggccagcc cggcagccgg tcaagcggtg gtgctgggca
     3421 cgacacagat accgcccggt acaaacgtca tcagcactgc cggaaccgca ccagcacctg
     3481 gcgagcccgt tagcccactg gtcgtcggcg agctgcgtat cgtgctcacc accactgcgc
     3541 cgctgcgcgc tggactgaac atcccggtca ccttccagtt ccgcaacgcg ggcaagctga
     3601 ccctgccggt gcccatggcg gctcccccgg gacagccgtc caattcggcc ggttaatcgg
     3661 cagctgccac ccggtcaaga gaccgaccgc agcatccgcc acgcggcccc acccatgacc
     3721 gacatccacg ctctggcccc catgccacat gatccacata agctacgtgg cattgagcta
     3781 tagccccggt tgttcgacgg catggcgcaa ccatgccgcg ccgaatcctg gcgctcgttc
     3841 ggaggttccg cggcttggcc cccgaatggc cctccccaat ctgccatgaa ccatcatagc
     3901 ctggcttagt tacgttagct cgcgccggcc aagcgggcga agctctgctc aaggcactgc
     3961 agcagacaca cacacaatcg ttgtggaatg gactttgcga tgggtatttc cctggcgatc
     4021 gatgaagatg tcgtagtgcg cacaccggac gacttcatgg cgatgccgga agactattgc
     4081 gaggtcgccc tactgcagat gctagtcaac accgaaggtg agctatcggg cggggacgac
     4141 tacgtgcagg ttttcttccg ctggcgccga atgctgagaa gcgacaggtt tgcgcggaac
     4201 gcgcagtcga agagtatgac cattataatc cagggaagaa cgtgctggcc aagatcgggg
     4261 tcgacacgac tcacatggaa acccagacac ttgcggaccg taccctgttt gccgatgaga
     4321 ccgcgcattg agcagctagg gctccgcgta ccagagtagt accccgggag actgcaatgg
     4381 ctgccgtgac agccaagccg tccaaagctg gctgatggta aacccttctc gatttctgaa
     4441 caacgtggga aaaattggag ctctggctag aaacgctgaa gactattggc gccaatggca
     4501 ctgggcccgt ccccacatga acgggcccat acttacaagg cggcgatcaa caagtcatga
     4561 gccccacttg gtcttttcct ccatcacaag tgatcaggat ggatggcgaa ctggtgccgt
     4621 gggaggatgc acaggtacat gtgctgactc acgggctgca ttacggaacg ggtgtgctgg
     4681 aaggcagccg ggtgcatgcc acccgcacgg gtccagcggc attccgcctg aatgatcatc
     4741 tgtacgccag cttaccaaaa tcctaccggg gcgcgcctgt cggcttctcg gcagcacacg
     4801 ttgtcaagac tggcactttg acgcacaagc acaggcggcc tggttgctcg gcaccgcgaa
     4861 aaagtgcttc aagatcgtgt tccattggtt cgacaacaac gggacgcaat ggcaaatgca
     4921 ctgaccgagc tatttcacag ttccgctggc agatgcccgg aggcggactg tcgaatccat
     4981 aaaaataatg agtccaactt gcggcttccc tatatacatg atccagcttc ctcccggcgg
     5041 cccgtggcca tactcgcccg gcgctaccgg aaattcacaa gtagactatg agtgagtggc
     5101 tcgaagtgct cgcggagact gccgcccgct gacccggagg gaagcccagc gggcggctga
     5161 tccaagtacg gcgtggatgt catcccggta gtgggcgtgg gggaacgctg atttccgcca
     5221 tccggcggac gtagctttca tagtgtcggc gggcctcacc cagacgaccc gcctcgcaca
     5281 gagttcgaac gatgtccaga tgagctgcct cgtcgtagca gtcctgctgg agtacgcgga
     5341 gcaagtaccg cacggccgcg tcggcatcac cagcctcgcg cagccgtgca gccagggccc
     5401 gcagcagggc gatgtagctg cctcgaacct cttcggccaa cgcgcccgcc cactcctgcc
     5461 aggggtcttc ttcgaggaaa cccccggtgt gggcagcaac ggcagcctca agccgggcga
     5521 tcgcatcgga ctcccctgcc cggtccgcat ccagggcggc gctggctcgg tcaagaaagt
     5581 catcgacgtc gacgctgatc agggcgcgat tcaacgacac cgaaccgctg gtagtgagca
     5641 atgggccctc gctggctgag cgggtaacca gcacatcgcg gagtgccgaa agcagcactg
     5701 agagccggtt tccggccaca gccgggtcca cctccggcca cagcagctcc atcagctgac
     5761 cgcgggggat tggcctgcgc cgggtaacca ggatctttaa caagtccctg gctttcttcg
     5821 acctccattc aagagtcgga accggagccc catcacggat tacccggaac gtaccgagcg
     5881 tctggacgga caccgcgggc gtgaagtggc ccagcacccc gagcggtccg gcgacccgcc
     5941 gcgattcgac atcgacaccg tgatcccgaa gcaactggtc cgcgacatca ccgtcgacgc
     6001 gcggaatagg cgagccgatg tgcgccgcca ccaccctggt cgcggcttcc tccagccggc
     6061 aacccgtttc ctgccagatg tcgattgcct cccgtagtgg agcggcatcc acgacagact
     6121 cgctggccgc gagcacgctg agggtgatcg cctcagccag tcctggattg tctcgccgtt
     6181 gccgggcgac ggcggcagcc cgagcagcat ccgccgaggc gagctgccgg tcgctgccca
     6241 tcaattcgac ccagccacgg gccaggaatg ctgggattct gcgaagcccc tcacccaacg
     6301 caacggcccg agcagcgaac tctcgagcga gttccaggtc atcggtcgcc ccaatgcgcg
     6361 cgagaccgat cagcgccgaa ctgagaccaa acacatcgcg gcaaggctca gcgatggaca
     6421 gcgcctcctc gtacaccgcc tgggctcgaa ccagctgtcc cctggtccgg tgcagatcac
     6481 ccacgccaca caggggccag gccaggaatc gggagccgat gcgctggaaa agttcgatgg
     6541 ctgtgctgaa gtcgaccgct gccggatcga gcatgccgag acggcttcgg gcacgtcccc
     6601 gggtggtcag gcagtgcgcg gtgaaaaatg gatcctcgat acgctcactg agcttcagcc
     6661 cgaccccggc ctcggccagc gcccggcggg gcgaacccgc ctcgaagtaa tggaacgccc
     6721 gcgaagtccg ggtccacgtc agctggagta agtcgccggt cgcttcggca gtgcgcagtg
     6781 cttcagcgca gtgggcgtta gcctgccgcc aatcgccctc ggcggcggcg aggagggtga
     6841 acatgttgtg cacggtggtc cacgcacggg gatcgtcgca ccgccgggca gcggcccggg
     6901 tttgacgcgc aatcttgcgc atgttcacca ggtcaccggt catccgatgc gcgctcgcgg
     6961 ccagcgaaag tacccgcgtc tcatcgaggg tgtcttcccg gtccagccgg gtacgttcgg
     7021 tgagggcgtg gacctcggcg aactcgccct gggcgaaagc gagcattccc agccgccacg
     7081 acagcgccgg ctcaagctcg tcctgcttgt cactggcgtg ccggtaatgg tgcatcgctt
     7141 gcgcccattg ccctcgcacc tgctgcgcct ggccgagaac ctgttggatg cgcggatcgt
     7201 caaggtactc ggccggtaa
//
LOCUS       DASVXZ010000166         4963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_466443, whole genome shotgun sequence.
ACCESSION   DASVXZ010000166 DASVXZ010000000
VERSION     DASVXZ010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466443"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..974
                     /gene="hisF"
                     /locus_tag="VF788_03320"
     CDS             201..974
                     /gene="hisF"
                     /locus_tag="VF788_03320"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005458387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEX8933223.1"
                     /translation="MSVAVRVIPCLDVDAGRVVKGVNFTALRDAGDPVELATAYDAQG
                     ADELTFLDITASAADRETTYDVVRRTAECVFIPLTVGGGIREVADVDCLLRAGADKVS
                     INTAAVARPELLREASHRFGAQCIVLSVDARRVPSGDQPTPSGFEVTTHGGRRGTGID
                     AVAWAAQGQQLGVGEILLNSMDADGTKAGFDIEMISAVRAAVTVPVIASGGAGEVEHF
                     PPAVAAGADAVLAASVFHFGQLRIGEVKDGLRRAGVTVR"
     gene            971..1333
                     /gene="hisI"
                     /locus_tag="VF788_03325"
     CDS             971..1333
                     /gene="hisI"
                     /locus_tag="VF788_03325"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEX8933224.1"
                     /translation="MSELDPQIAGKLKRNAHGLVCAVVQQRGTGEVLMVAWMDDEALR
                     RTLNTGRATYWSRSRQTYWVKGETSGHTQDVHEVRLDCDGDALLLLVDQTGPACHTGS
                     PTCFDEVLLPSREWRCES"
     gene            complement(1347..1952)
                     /locus_tag="VF788_03330"
     CDS             complement(1347..1952)
                     /locus_tag="VF788_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX8933225.1"
                     /translation="MTDEVSGQARPRGRRPAGENTRAALLEAARMEFTERGFDGATVR
                     TIAQRAGMDPAMVNHWFGGKDGLFVSALQLPVDPEDIVRRVLDGDPGQTAERILRTFL
                     TVWDTNGGGALTALVRSVSSHEAAARMMREFVSRVIFGRIVTAVAPDQPELRTALCGT
                     QITGLAMIRYVICLEPLASADHDTVVTAIAPNLQRYLTGVL"
     gene            2031..3605
                     /locus_tag="VF788_03335"
     CDS             2031..3605
                     /locus_tag="VF788_03335"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HEX8933226.1"
                     /translation="MVSIRATGVGQVHLDRERFRALATGRRVIPVTRALLADGETPLS
                     VYRKLAHGRAGTFLFESAENGSSWSRWSFVGVNSAATLTESGGRAVWRGTPPVGLPGV
                     AGTWAGTPLEALHQTVAALHTEPLPGLPPLTGGMVGYLSYDAVRRLERLPELTVDDLK
                     VPELVMLLATDLAAMDHHEGTITLIANAINWDDSAQRVDEAYDDAVARLDAMVAKLCT
                     PAPASTAVFSRPAPEFLRRRSPEQHHGAVEAAKEAIRAGEAFQVVVSQRFEMTTDADP
                     LDIYRILRTTNPSQYMYLLTLEDFSIVGCSPEALVTVRDGKVTTHPIAGTRPRGADPD
                     EDSWLEKDLMVDEKERAEHLMLVDLGRNDVGRVCRPGSVHVTDFFRVERYSHVMHLVS
                     TVTGELAPGYTAFDAVAACFPAGTLSGAPKPRAMELIEELEPTRRGVYGGVVGYLDFA
                     GDADTAIAIRTAMVRNGVAYVQAGGGIVADSDPVAEDAECLNKARAVLAAIAAAGTLR
                     LATGETAGEPAGSLRG"
     gene            3577..4200
                     /locus_tag="VF788_03340"
     CDS             3577..4200
                     /locus_tag="VF788_03340"
                     /inference="COORDINATES: protein motif:HMM:NF021079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trp biosynthesis-associated membrane protein"
                     /protein_id="HEX8933227.1"
                     /translation="MNPPDRCVVERAPSRKALVATIVALIAASAALGGSAAIEWVQMD
                     VQAPLRGIIPVRLAGSAVLPALGPLAVLALAAVAAVLASSGWVRWLLGALLLGAAVPP
                     TVAVLRALDERWLTGAAMSAGQRPARSVPIGSAMVHFAGPALAAVAAVLIAAAGVALV
                     LRGHRMPRLGRRYETPTARPSGPESLDGRFWERMDAGEDPTAPGHPR"
     gene            4268..>4963
                     /gene="trpC"
                     /locus_tag="VF788_03345"
     CDS             4268..>4963
                     /gene="trpC"
                     /locus_tag="VF788_03345"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEX8933228.1"
                     /translation="MSVLETILEGVRVDLAAREAVIEFTEIKRRATRVRAPRDALSAL
                     RGPGIGVIAEVKRRSPSRGALADIPDPAALAADYADAGARMISVLTEGRRFGGSLADL
                     DAVRAAVDVPVLRKDFIVSPYQVHEARAHGADVVLLIVAALEQNALVALVDRVESLGM
                     AALVEVHTAEEADRALEAGATLIGVNARDLHTLDVNPAVFSKIAPGLPPDVLRVAESG
                     VRGPADLMAYAGAG"
BASE COUNT          759 a         1650 c         1758 g          796 t
ORIGIN      
        1 cccacgtgcc cctaccccct gggccggtgc agaccttgcg cgccgcgtcg agggcacccg
       61 cgagcttcgc tccgccccgt cgacgcccgg ttgtcggctt cgaatctccg cgtcgcttaa
      121 ctccaccatg ccgtcactcg acgaactcac cgcagcggct tcctgaattt ttgttgcctc
      181 ccgcacccta ggctggatgg atgagcgtcg ccgtacgcgt gatcccttgc ttggatgttg
      241 atgccggccg agtggtcaaa ggggtgaact tcaccgcgtt gcgggatgct ggtgatccgg
      301 tggaactggc caccgcctat gacgctcagg gtgccgacga gctgaccttc ctggatatca
      361 ccgcctccgc ggcggaccgg gaaaccacct atgacgtggt gcgccggacc gcggaatgcg
      421 tgtttatccc actcaccgtc ggcggaggga tccgggaagt ggccgatgtg gactgcttgc
      481 tgcgagccgg cgcggacaag gtgagcatca acaccgccgc ggtagcgcgt cccgagctgc
      541 tgagggaggc cagccatcgc ttcggagccc agtgcatcgt gctctccgtg gatgcccggc
      601 gggtcccctc cggtgatcaa ccaaccccct ccggtttcga ggtgaccacc catggcgggc
      661 ggcgcggcac cgggatcgat gcggtggcct gggctgccca aggccagcaa ctgggcgtcg
      721 gggagatcct gctcaactcc atggacgccg acggcaccaa agctggcttc gatatcgaga
      781 tgatctccgc ggtacgcgcc gccgtcacgg tcccggtgat cgccagcggc ggggcaggcg
      841 aggtcgagca cttcccaccc gcggtggcgg ctggtgccga cgcggtgctc gcggccagcg
      901 tctttcactt cggtcaacta cggatcggcg aggtcaagga tggcctgcgc cgcgcagggg
      961 tgacagtccg gtgagcgaac tggacccaca gatcgccggg aagctcaagc gcaatgccca
     1021 cgggctggtg tgtgccgtgg tgcagcagcg tggcacgggt gaggtgctga tggtggcgtg
     1081 gatggacgac gaggcattgc gccggacgct gaataccggt cgggccacct actggtcgcg
     1141 cagcaggcag acctactggg tcaagggtga gacctccggg cacacccagg acgtgcatga
     1201 ggtccgcctg gactgcgacg gcgacgcgct gctgctgctc gtcgaccaga ccggcccggc
     1261 ctgccacacc gggtcgccga cgtgcttcga cgaggtgctg ctgcccagcc gtgagtggcg
     1321 atgtgagtca tgactcacat cgccactcac aagacgccag tcaaatagcg ctgcaggttg
     1381 ggggcgatcg ctgtgaccac ggtgtcgtgg tcagcggagg ccagcggctc gaggcagatc
     1441 acgtagcgga tcatcgcgag gccggtaatc tgagtgccgc acagcgccgt gcgcagctcg
     1501 ggctggtccg gagcgaccgc ggtgacgatc cgaccgaaga tcacccggct gacgaactcg
     1561 cgcatcatcc gcgctgctgc ctcatgactg gaaacgctgc gcaccagggc agtcagcgct
     1621 ccaccgccgt tggtgtccca gaccgtcagg aaggtgcgca ggatccgctc ggcggtctgt
     1681 ccaggatccc cgtcgaggac ccggcggacg atgtcctccg ggtcgaccgg cagctgcagg
     1741 gcggatacga acaggccgtc cttgccgccg aaccagtggt tgaccatcgc tggatccatt
     1801 ccagctcgct gcgcgatggt gcgtactgtc gcgccgtcaa agccgcgctc ggtgaattcc
     1861 atccttgccg cctcgagcag cgccgcccgg gtgttctctc cagccggacg gcgtccgcgg
     1921 ggacgggctt ggccgctgac ctcatccgtc actgatgatc tccatttcaa catatgatga
     1981 aaaaatatgc cgaacacact ctggagtcaa acggcgggca caatgtctcc atggtcagta
     2041 tccgcgccac cggggtcggg caagtacatc tagatcggga gcggtttcgc gccctggcca
     2101 ccggtcgccg ggtgatcccg gtcacccggg ccctgctcgc cgacggcgag acccccctga
     2161 gtgtctatcg caagctcgcc cacggccggg cgggaacatt cctgttcgag tcggcggaga
     2221 acggctcctc ctggtcccgc tggtcgttcg tcggggtgaa cagcgccgcc acgctcaccg
     2281 aatccggtgg ccgcgcggtc tggcgtggga cgccgccggt cgggctcccc ggtgtggccg
     2341 ggacgtgggc gggcacgccg ctagaggcct tgcaccagac cgtggcggca ttacataccg
     2401 agccgttacc gggcttgccc ccgctcaccg gcgggatggt cggctacctc agctacgacg
     2461 cggtccggcg cctggagcgg ctgcccgagt tgacggtcga cgacctcaag gtgcccgagc
     2521 tggtgatgct gctggccacc gacctcgctg cgatggacca ccatgagggc accatcacgc
     2581 tgatcgccaa cgcgatcaac tgggatgatt ccgcccagcg cgtcgatgag gcctacgacg
     2641 acgcggtcgc ccggctggat gcgatggtcg cgaagctgtg cacgccggca ccggccagca
     2701 cagcggtgtt cagccgaccg gcaccggagt tcctgcgccg ccgcagtcca gagcaacacc
     2761 acggtgccgt tgaggcggcc aaggaggcga tccgcgctgg cgaggccttc caggtggtgg
     2821 tctcccagcg cttcgagatg accactgacg ccgatccgtt ggacatctac cggatcctgc
     2881 gcaccaccaa cccgagccag tacatgtacc tgctcaccct ggaggacttc agcatcgtcg
     2941 gctgcagccc ggaagccctg gtaacggtgc gggacggaaa ggtcaccaca catcccatcg
     3001 ccggtacccg gccccgtggc gccgatccgg acgaggacag ctggctggag aaggacctga
     3061 tggtcgatga aaaggagcgc gccgagcacc tgatgctggt cgatctcggc cgcaatgacg
     3121 tcggccgggt gtgccgtccc ggctcggtgc atgtcaccga cttcttccgg gtcgagcgtt
     3181 atagccacgt catgcacctg gtctccacgg tgaccggtga actggcgccg ggatacaccg
     3241 cgttcgacgc ggtggccgcc tgcttccccg ccgggacgtt gtccggggcg cccaagccgc
     3301 gggcgatgga gctcatcgag gagctcgagc ccaccaggcg gggcgtgtac ggcggagtgg
     3361 tcggctatct ggatttcgcc ggggatgccg acaccgcgat cgcgatccgc accgcgatgg
     3421 tccgcaacgg ggtggcctac gtgcaggccg gcggaggcat cgttgcggac tccgacccgg
     3481 tggctgaaga cgccgagtgc ttgaacaagg cgagagcggt gctggccgcc atcgccgccg
     3541 ccgggacctt gcgactggcc accggggaaa ccgctggtga acccgccgga tcgctgcgtg
     3601 gttgagcgcg ctccatcgcg caaggcgttg gtagccacca tcgtggcgct gatcgctgca
     3661 tcggcggcgc tcggcggctc ggcggcgatc gagtgggtgc agatggacgt ccaggcaccg
     3721 ctgcgcggga tcatcccggt gcggttggcg ggctcggcag tgttgcccgc gctgggtccg
     3781 ctggcggtgc tcgcactggc ggcggtagcc gcggtgctgg cgagtagcgg atgggtgcga
     3841 tggctgctcg gcgcattgct gctcggcgcg gcagtgccgc ccacagtcgc ggtgctgcgg
     3901 gctctcgacg agcgttggct taccggcgcc gcgatgtccg cggggcagcg ccctgcccgg
     3961 tcagtcccga ttgggtcggc catggtgcac ttcgccggcc ccgcactggc agcggtggca
     4021 gcggtcttaa tcgccgcggc cggtgtcgcg ctggtgctgc gcggtcaccg aatgccccgc
     4081 ctgggccgcc gttacgagac gccgacggct cgcccgagcg ggccggagtc cctggacggg
     4141 cggttctggg agcgaatgga cgctggcgag gaccccaccg cgccaggaca cccccggtga
     4201 ggagtcgccg accaggccgg agctagcatc gatacccggc tgcgcacggg ggcggaaggg
     4261 gagaggcttg agtgtcctgg agacgatcct cgaaggggtc agagtcgacc tcgcggcccg
     4321 cgaagccgtc atcgaattca ccgagatcaa gcggcgcgcc acccgggtac gggctcctcg
     4381 ggatgcgctg agcgcgttac ggggtcctgg gatcggcgtg atcgcagagg tgaagcgccg
     4441 cagcccgtcc cgcggagctc tcgctgacat cccggatccg gccgcgctcg ccgcggacta
     4501 cgccgacgcc ggcgcccgga tgatcagtgt gctcaccgag ggacggcggt tcggcggctc
     4561 gctggccgac ctggatgcgg tccgcgcggc ggtggatgtg ccagtgctgc gaaaggactt
     4621 catcgtcagc ccttaccagg tgcacgaggc ccgggcgcac ggtgccgacg tggtactgct
     4681 gatcgtcgcc gcgctggagc agaacgcgct ggtggcgctg gttgaccggg ttgagtcgct
     4741 ggggatggcc gcgctggtcg aggtgcacac cgccgaagag gccgaccgag cattggaggc
     4801 tggggcgacc ctgatcgggg tgaacgcccg tgatctgcac accctggacg tcaacccggc
     4861 ggtcttcagc aagatcgcgc ccgggctgcc gcccgatgtg ctccgagtcg ccgagtccgg
     4921 ggtgcgcggg ccagccgatc tgatggccta cgccggtgcg ggc
//
LOCUS       DASVXZ010000167         5296 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1542368, whole genome shotgun sequence.
ACCESSION   DASVXZ010000167 DASVXZ010000000
VERSION     DASVXZ010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5296
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1542368"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1090)
                     /locus_tag="VF788_03350"
     CDS             complement(<1..1090)
                     /locus_tag="VF788_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8933229.1"
                     /translation="MSGAVEQVVVVTGASGGIGRAVAQAFGARGAKVALLARGELGLQ
                     GAAKDVEAAGGTALMFPVDVAEYDQVERAAQQVEQELGPIDVWVNVAFTSVFAPFMKI
                     EPEEYKRVTEVSYLGYVYGTRAALARMIPRDRGVIVQVGSALAYRGIPLQSAYCGAKH
                     AIQGFHDSLRCELLHNKSNVRVTMVQMPAVNTPQFSWVLSRLPHHAQPVPPIYQPELA
                     AKAVVFAADHPQRREYWVGGSTAATLIGNKFAAGLLDRYLGKTGYSSQQTDQPRDPDQ
                     PANLWEAADGPNGRDFGTHGIFDTRATSRSYQLWASQHERLLGSLVAGGAAALTIPCG
                     AGSRTRPTTTRQGARAGAEHLLDRMVANV"
     gene            complement(1104..2249)
                     /locus_tag="VF788_03355"
     CDS             complement(1104..2249)
                     /locus_tag="VF788_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009077218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEX8933230.1"
                     /translation="MSSTALAARIDAIEVGAYTVPTDAPEADGTLAWGSTTMVLVEIR
                     GGEVCGTGWTYGPPACAQVIIDQLADVVLGRDALDVGAAFDGMVKAVRNAGRPGAVGY
                     AISAVDIALWDLKARLLGLPLHRLLGAVRDEAPVYGSGGFTSYHEDQLRKQLAGWVYE
                     QHIPRVKIKIGESWGTDVGRDLERMAQARDVVGAEVELFVDANGGYDSKQAIRVIRAA
                     AELDIRWFEEPVSSDDVEGLREVRVAVAPDVAAGEYGYDLTYFRRLCAAGAVDCLQAD
                     VSRCGGITEWLRVAAIAAAHHLEISGHCAPHLHAHAAMATPNLRHLEWFHDHVRIEHM
                     FFDGALEPQGGTVCPHPTAPGHGLRLRREVASRYQVGLIKCREWNPR"
     gene            complement(2253..4046)
                     /locus_tag="VF788_03360"
     CDS             complement(2253..4046)
                     /locus_tag="VF788_03360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-requiring protein"
                     /protein_id="HEX8933231.1"
                     /translation="MSTSSVADYVLNRLREWEVETVFGYPGDGINGLLAAWGRADNRP
                     QFVQARHEEMAAFEAVGYAKFTGRLGVCAATSGPGAIHLLNGLYDAKLDHVPVLAIVG
                     QTNRSAMGGSYQQEIDLLNLFKDVASDYLQMVTVSEQLPNVLDRAIRTALARRAPTAV
                     ILPADVQELDYSAPTHEFKMVPSSLGLHWPQLAPDSDALRHAAEILNGGSRVAILAGS
                     GARGAAAELEQVADLLGAGVAKALLGKDVLSDELPYVTGSIGLLGTRPSYEMMRAADT
                     LLTVGSSFPYTQFMPEFDQARAVQIDLDPVMIGMRYPYEVNLVGDAASTLRALLPLLH
                     RKEDRSWREGIESDVARWWETMVMQAGVEADPINPMRLFAELSPRLPEDAIVTADSGS
                     SANWYARQLRFRGTMRGSLSGNLATMGPGVPYGIGAKFGCPHRPVIVFAGDGAMQMNG
                     LAELITIKRYWEQWADPRLIIAVLHNDDLNQVTWEMRAMAGAPKFVESQRLPDVDYAG
                     FAASLGLQAIAVDKPGDIASAWDNALGANRPTLLDVRCDPNVPPIPPHATFEQMTDAA
                     KALWAGDEDRWGVIKQGVKTKLQEFLPHRQG"
     gene            4209..4631
                     /locus_tag="VF788_03365"
     CDS             4209..4631
                     /locus_tag="VF788_03365"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933232.1"
                     /translation="MVPQVTRLTDDQYARLLAFRAELRRFLRWSEEQAATVGLTPAQH
                     QLMLAIRGHPDSRGPSVGELADYLSTRHHSAVQLIDRAEQLGLVTRHREDSNDRRIVR
                     LTLTKTGEAKLTQLSTTHLEELQRLATLIHAVVDPTPA"
     gene            complement(5114..>5296)
                     /locus_tag="VF788_03370"
     CDS             complement(5114..>5296)
                     /locus_tag="VF788_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933233.1"
                     /translation="NSCGGQTVYGGAGGIAGYNSLALSTRDGNRRFTVALNTASNDPL
                     AATDKLLRIARSVFCG"
BASE COUNT          934 a         1879 c         1599 g          884 t
ORIGIN      
        1 agacgttggc caccatccgg tcgagcaaat gctcagcacc ggccctcgca ccctgccggg
       61 ttgtggtcgg tcgagttctc gaaccggctc cgcacggaat ggtcagcgcg gccgccccac
      121 cggcaaccag ggaaccgagc agtcgctcgt gctgcgaggc ccacagctgg tagctgcgtg
      181 aggtcgccct ggtatcgaag atgccgtgcg taccgaagtc ccggccgttc ggcccatcgg
      241 ccgcttccca caagttggcg ggctggtcgg ggtcccgggg ctgatcggtc tgctgggagg
      301 agtagccggt cttacccaga tagcgatcca gcagcccggc ggcgaatttg ttaccgatca
      361 acgtggccgc tgtgctcccg ccgacccagt actcacggcg ctggggatgg tccgcggcga
      421 agaccactgc cttggcggcg agctcgggct ggtagatcgg cggcaccggc tgcgcgtggt
      481 ggggcagccg ggagagcacc caggagaact gcggggtgtt caccgcgggc atctgcacca
      541 tggtcacccg cacgttgctc ttgttgtgca gcagctcgca gcgcagcgaa tcgtgaaagc
      601 cctgaatggc atgcttggcc ccgcagtacg ccgactgcaa ggggatgccg cggtaggcca
      661 acgccgagcc gacctgcacg atcactccac ggtcgcgggg gatcatccgg gccagggccg
      721 cccgggtccc gtagacgtaa ccgaggtagc tgacctcggt gacccgcttg tactcctctg
      781 gctcgatctt catgaacggg gcgaacactg aggtaaaggc cacgttgacc cacacgtcaa
      841 ttggccctag ctcctgttcc acctgctgcg ccgcgcgctc gacctggtcg tattcggcga
      901 cgtccaccgg gaacatcagc gcggtcccgc ccgccgcctc gacgtccttg gccgcgccct
      961 gcaggcccag ctcaccgcgg gccagcaggg cgaccttcgc gccccgggcg ccgaaggctt
     1021 gggcgacagc tcgtccgatc ccaccgctgg cgccggtcac caccaccacc tgctcgactg
     1081 ccccgctcat cacgggtacc tcctcacctc gggttccatt cgcggcactt gatcaagccg
     1141 acctggtagc gggacgcgac ctcacgccgc aggcgcagcc catggccggg tgccgtggga
     1201 tggggacaca cggtgccccc ttggggctcc agtgcgccgt cgaagaacat gtgctcaatc
     1261 cggacgtggt cgtggaacca ctccaggtgc cgcaggttgg gcgtggccat ggccgcgtgc
     1321 gcgtgcaggt gcggggcgca gtgcccggag atctccaggt gatgcgcggc cgcgatggca
     1381 gcgacccgca gccattcggt gatgccaccg cagcgggaca cgtcggcctg caagcagtcg
     1441 accgcaccgg cagcgcagag ccggcggaag taggtcaggt catagccgta ctcgccggcg
     1501 gcgacatccg gcgcgacggc gacccggacc tcacgcagcc cttccacatc atcggaggac
     1561 accggttcct cgaaccaccg gatatccagc tcagcagcgg cccggatcac ccggatggcc
     1621 tgcttgctgt cgtaaccgcc gttggcatcg acgaacaact cgacctctgc tccaaccacg
     1681 tcgcgcgctt gggccattcg ttctaggtct cggccgacgt cagtgcccca ggactcacca
     1741 attttgatct tcacccgggg aatgtgctgc tcgtagaccc accctgcgag ttgcttgcgc
     1801 agctgatcct cgtggtagga ggtgaacccg ccgctgccgt acaccggcgc ctcgtcgcgg
     1861 accgcgccca gcagccgatg cagaggcagc ccgagcaacc gggccttgag gtcccacagc
     1921 gcgatgtcca ccgccgagat cgcgtaaccg accgcaccgg gacgccccgc gttgcgcact
     1981 gctttgacca tcccatcgaa cgctgcgccg acatcgagcg cgtcacggcc caacaccaca
     2041 tcggccagct gatcgatgat cacctgagcg cacgcgggcg ggccgtaggt ccagcctgtc
     2101 ccacagacct cgccgccgcg gatctcgaca agcaccatcg tggtggagcc ccacgccaga
     2161 gtcccgtccg cctcaggtgc atcggtcggg accgtgtacg ccccgacctc gatcgcgtcg
     2221 atcctcgccg ccagtgccgt gctcgacatc tctcagccct gccggtgggg caagaattcc
     2281 tggagcttgg tcttcacgcc ctgtttgatc actccccagc ggtcctcatc gcccgcccac
     2341 aaggctttcg cggcatcagt catctgctcg aaggtggcgt gcggcggaat cggaggcacg
     2401 ttgggatcac aacgcacgtc cagcagcgtc ggccggttcg cgcccagcgc gttatcccag
     2461 gccgatgcga tatcaccagg cttgtcaacc gcgatcgcct gtaacccgag gctggcggcg
     2521 aatccggcgt agtccacgtc gggcaggcgc tgcgactcga cgaacttggg ggcaccggcc
     2581 atcgcccgca tctcccaggt gacctggttc agatcgtcgt tgtgcaagac ggcgatgatc
     2641 agtctcggat ccgcccactg ctcccaatac cgcttgatgg tgatcagctc ggcgaggccg
     2701 ttcatctgca tcgcaccgtc cccggcgaac acgatcaccg ggcgatgtgg gcagccgaac
     2761 ttcgcaccga tcccgtaggg cacccccgga cccatggtgg ccagattccc cgacagcgag
     2821 ccccgcatgg tgccacggaa acgcagctgc cgcgcatacc agttcgccga cgatcccgag
     2881 tcagcggtga cgatcgcgtc ctcggggagc cgcggactca gctcggcgaa caggcgcatc
     2941 gggttgatcg gatccgcttc gacacccgcc tgcatcacca tggtctccca ccagcgggcc
     3001 acgtcggact caataccctc ccgccaggac cgatcctctt tgcgatgcag cagcggcagt
     3061 aacgctctta gagtgctcgc ggcgtcaccg accaggttca cctcatacgg gtagcgcatg
     3121 ccgatcatga ccggatcgag gtcgatctgc accgctcgcg cctggtcgaa ttcgggcatg
     3181 aactgggtgt agggaaagct cgagccgacc gtcagcaagg tgtcggcggc tcgcatcatc
     3241 tcgtagctcg gccgggtgcc tagcagcccg atcgacccgg tcacgtacgg cagctcatcg
     3301 gagagcacgt ctttgcccag caacgccttg gccaccccgg cgccgagcag gtccgcgacc
     3361 tgctcaagct cggcggccgc gccgcgagca ccggagccgg ccaggatcgc gacccggctg
     3421 ccgccgttga ggatctccgc cgcgtggcgc agggcatcgg aatcaggggc cagctgaggc
     3481 cagtggagac ccaggctgga gggcaccatc ttgaactcgt gagtcggtgc cgagtagtcg
     3541 agttcctgca cgtcggccgg caggatgacc gcggtcggag cccggcgcgc cagcgctgtc
     3601 cggatcgctc ggtccagcac gttgggcagt tgctcggaca cggtgaccat ctgcaggtaa
     3661 tcgctggcca cgtccttgaa caagttgagc aggtcaatct cctgctggta agagccgccc
     3721 atcgcgctgc gattggtctg cccgacaatt gccagcaccg gcacatggtc aagcttggcg
     3781 tcgtacagac cgttgagcag gtgaatcgca ccaggccccg acgttgctgc acacaccccc
     3841 aaccgtcccg tgaacttcgc gtaccccacc gcctcgaacg ccgccatctc ctcgtgccgg
     3901 gcctgtacaa actgcggccg gttatcggct cgaccccacg cggcgagcaa cccgttgatc
     3961 ccgtcaccgg gatagccaaa gaccgtctcc acctcccact cccgcaagcg gttcagcaca
     4021 taatcagcaa cagacgacgt ggacaccatc tctccatctc tcccttgagc cggcggttcg
     4081 cgccccgccg ccgaccctcc gcgttcccta cgaccagcca ctcgtgaata agtagccggc
     4141 tggccatggg ggtgtagacg gcacatctac atcatgtcat gataatatca tgttaggagg
     4201 tagttgcagt ggtgccacag gtcacacgcc tcacagacga ccaatacgcc aggctgctcg
     4261 ccttccgagc cgagctacgc cggttcctgc gctggagtga ggagcaggcg gccacagtgg
     4321 gacttacgcc tgcccagcat cagctcatgc tggcaattcg aggccatcct gactcccgtg
     4381 gccccagcgt cggagaactg gccgactacc tgagcactcg ccaccacagc gccgtacagc
     4441 taatcgatcg cgccgagcaa ctcggcctcg tcacccgcca ccgcgaagac agcaacgacc
     4501 gccgcatcgt gcgcctcacc ctgaccaaaa caggcgaagc gaaactcacc caactcagca
     4561 ccacacacct cgaggagctc cagcggctcg ccaccctcat ccacgcggta gtcgacccaa
     4621 cccccgcgta acacaccctg atacagggac catccgatgg agtcagtggc tatccattac
     4681 gaagaaacac aaagaccacc cgttcccctt gcggtcccca ctcaccaacg aactttgtcg
     4741 aatcagtcca tttcgtggga tctgttagcc aaaccggcct gagcattcga tcccgtttcg
     4801 gagccacgat agcgacccac cacgccccgc gcgctcgtgg tagccgcgtt tatcttcgac
     4861 gcgcgccacg atgctcacac cgaatccctt ccaactctgc ggcggtgctc cgtgggtttc
     4921 gaagaacgtg cgcaataagg ccagttgatg atcgagctgc cacttcggcg cccatgagcc
     4981 acaaccatgc cgtgaggcga tgtcgcgcat ccgttggcct ggacgggtct ggtcgaaagt
     5041 tacacgctcg ctgtttccaa agctcgggtc tcctcacttc tcatggttgc tccgcgcgct
     5101 tcgcgtctgg gcgctatccg cagaagacgc tccgtgcgat ccgcagcagc ttgtccgtcg
     5161 ccgccaacgg atcgtttgac gccgtgttga gcgcgacggt gaagcgtcgg ttgccgtcac
     5221 gggtactgag cgcgaggctg ttgtagccgg cgatcccgcc ggcgccgccg tagacagttt
     5281 gcccaccaca gctgtt
//
LOCUS       DASVXZ010000168         2335 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_18063, whole genome shotgun sequence.
ACCESSION   DASVXZ010000168 DASVXZ010000000
VERSION     DASVXZ010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18063"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VF788_03375"
     CDS             complement(<1..641)
                     /locus_tag="VF788_03375"
                     /inference="COORDINATES: protein motif:HMM:NF020896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050485 - oxidoreductase activity, acting
                     on X-H and Y-H to form an X-Y bond, with a disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase component B
                     subunit"
                     /protein_id="HEX8933234.1"
                     /translation="MLALRRIVHEVHAIEIGVATRYEQHRLVVGRAAVQALFTDPALA
                     SVRVHVAARGDRVRIIAPLDVVEPRSKGPGGGVFPGWMAPVNRKRGGDTHVLRGAAVL
                     AAGHLPRNQEGLIDMSGPASQRSPFGRTNNVVIEFDRAEDASWQEAEVAMRRGLLRLA
                     VHLADAAVEAAPDAIEELAPPHRPGTPTTGLPRVGVITNLQTQGAFKDVFVYGR"
     gene            982..1470
                     /locus_tag="VF788_03380"
     CDS             982..1470
                     /locus_tag="VF788_03380"
                     /inference="COORDINATES: protein motif:HMM:NF040083.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6400 family protein"
                     /protein_id="HEX8933235.1"
                     /translation="MADTTSASRQPDEVSWPISFVLDLTAHEIHRVTSVLNAMPEWDP
                     VAVLAAGVKAHALLYSDLNAEQRSTYDLRYEEGVFDVRRCRLPGPPGLTALPALPRGQ
                     LPELCRQSHLRSALADLLANEGRLVFLQCPSCMHRWWHDTGASAEDKPPEPFSTHRDE
                     AA"
     gene            1519..1917
                     /locus_tag="VF788_03385"
     CDS             1519..1917
                     /locus_tag="VF788_03385"
                     /inference="COORDINATES: protein motif:HMM:NF012923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004867 - serine-type endopeptidase
                     inhibitor activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SSI family serine proteinase inhibitor"
                     /protein_id="HEX8933236.1"
                     /translation="MRTAARMLYASAVMIVAATVAAPAAVATVATTAPETFMVLGVQG
                     RSGAQFVTLRCDPVSGTHPHPEAVCKALGASGGDINKVIGQPDTLCPNIYDPVTATAS
                     GSYQGMQVIFRRTYSNRCDLATKTAPVFEF"
     gene            1978..>2335
                     /locus_tag="VF788_03390"
     CDS             1978..>2335
                     /locus_tag="VF788_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S41"
                     /protein_id="HEX8933237.1"
                     /translation="MLSSGNDSYLRYPTLHGELVGFVAQDDVWLGPLERDRPWQLTSD
                     HSPTRDLRFSPDGAHLAYVGQRDGVPELHVVATTGGPSVRTTWWGDAHIRVLGWADTG
                     RVHVASAVGEPLRHRTW"
BASE COUNT          390 a          782 c          755 g          408 t
ORIGIN      
        1 cgcccgtaga cgaagacgtc cttgaacgcc ccctgagtct gcaggttggt gatcacgccg
       61 acgcgaggca gcccggtggt gggcgtgccc ggccggtgcg gtggcgccag ctcctcgatc
      121 gcgtccggtg cggcctcgac ggctgcgtcg gccaggtgca cggccaaccg cagcagcccc
      181 cggcgcatcg caacctcggc ctcttgccag gaggcgtcct cagcgcgatc gaactcgatc
      241 acgacgttgt tcgtgcggcc gaagggggag cgctgggagg ccggcccgga catgtcgatc
      301 aggccctcct ggttgcgggg caggtgtccg gcggcgagca cggcagcccc ccgcagcacg
      361 tgcgtgtcgc ctccgcgctt gcggttgacc ggcgccatcc agccaggaaa cactcctccg
      421 cctggacctt tggagcgcgg ctccacgacg tcgagcggcg cgatgattcg aacccggtct
      481 ccccgtgccg caacgtgcac ccgtaccgac gccagcgcgg ggtcggtgaa gagcgcctgg
      541 accgctgccc tgcccactac cagccggtgc tgctcgtacc tggtggcgac gccgatttcg
      601 atggcgtgga cctcatgcac gatgcgccgc agtgccaaca cgacggtcct ccctcgacgg
      661 catcggtgtc tgcatcgtaa ccgctgatcc cttgatcgtt cgagagatca gccccgcacg
      721 gggaccgcga tgacgacttc ccatccactt gaccttcggc acccgggctg tccggtcgcc
      781 ctcgagcagc cctgctgtcg agctaggcga caacaaggtt gatcacggac tcaatgatcc
      841 gcggaacgcg ctctgaccgc ccggcataaa gggcggttgc gaaggaaata gtgaaccttg
      901 ccaatcgtgg tcctggtcac aatggcgtgt aagcctggtc acgagcagac tgaaccgccc
      961 gtgctccaag gtatatgtgt tatggctgac acgacttcgg ccagccggca accggatgag
     1021 gtgagctggc caatatcgtt tgtcttagat ctcaccgcac atgagattca tagggtgact
     1081 tccgtattga atgccatgcc ggagtgggat cccgttgccg tactcgccgc aggagtcaag
     1141 gcccacgcgc tgttgtactc agacttgaac gcggagcagc gttccactta cgacctgcga
     1201 tacgaggagg gcgtgttcga tgttagacgc tgccgcctac ctgggccgcc gggcctgact
     1261 gccctgcccg cgctgccgcg aggacagctg cctgaactgt gccgtcaatc tcacctgcga
     1321 tcagcattgg cggacctctt agccaatgag gggcggctgg tattcctgca gtgtcccagc
     1381 tgcatgcacc ggtggtggca cgacaccggc gccagcgccg aagacaagcc cccggagcct
     1441 ttttcaaccc atcgagacga agcggcctga cgtagcatcg cggatgacgg acgccccgag
     1501 tcggggagga tcagcggtat gcgaaccgcg gccaggatgt tgtacgcatc agcggtaatg
     1561 atcgtcgcgg caacggtggc cgcacccgcc gctgtcgcaa ccgtggccac gaccgcaccc
     1621 gagaccttca tggttctcgg cgttcagggc cgtagtggcg cccagttcgt cacgcttcgc
     1681 tgcgaccccg tgagcgggac ccaccctcat cccgaagccg tctgcaaagc gctgggtgcg
     1741 agtggcggcg acatcaataa ggtgatcggg cagcctgaca cgctctgccc gaacatctat
     1801 gacccggtca ccgcaaccgc ctccggcagc taccaaggta tgcaagtgat cttccggcgt
     1861 acctattcga accgctgtga cctggcgact aagaccgccc ctgtttttga attttgagga
     1921 gagggccgca cgttgcgggc tcggcgcggg aatgatcgcc gccgataggg tgcgggagtg
     1981 ctgagctccg gtaatgactc ctacctccgc taccccaccc tgcacggcga gctggtcggt
     2041 ttcgtggccc aggacgatgt gtggctcggc cctctggagc gcgaccggcc gtggcagctg
     2101 acctctgacc actccccgac ccgggacctg cgcttctccc ccgacggcgc acatctggct
     2161 tacgtcggcc agcgcgatgg agtaccggag ttgcacgtgg ttgccaccac cggcggcccg
     2221 tcggtgcgca caacgtggtg gggcgacgcg cacattcggg tgttgggctg ggccgatacc
     2281 ggccgggtgc acgtagcttc cgcggtgggc gagccgctgc gccatcgcac ctggg
//
LOCUS       DASVXZ010000169         1915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_377726, whole genome shotgun sequence.
ACCESSION   DASVXZ010000169 DASVXZ010000000
VERSION     DASVXZ010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377726"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..1423)
                     /locus_tag="VF788_03395"
     CDS             complement(149..1423)
                     /locus_tag="VF788_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS701 family transposase"
                     /protein_id="HEX8933238.1"
                     /translation="MLDELLARVAGRFGRVEPRRRVRGFVLGLLADLPRKNCWTIAEH
                     AGDATPDGMQHLLGRAVWDTDGVRDDLRDYVTEHLGDPGAVLVVDETGDIKKGTATVG
                     VQRQYTGTAGRVENAQVAVYLTYAGQAGHAMIDRELYLPKSWTSDPARCARAGVPEDV
                     KFATKPQLARAMITRALDAGVPARWAAGDEVYGADPALRAELEARQLGYVLAIGCDRR
                     LPTAAGPMRADTLAATVPPGAWARLSAGRGAKGHRYYDWAWVSLTADSGQHWLLIRRH
                     LRHGELAFYRCYSPTPVRLGELVRVAGRRWTIEESFQAGKGLTGLDEHQVRRWLAWRR
                     WTLLAMLAHALLAVIAATQRAQHPPPEGLIALTCNEIRHLFTELITKPTRRLTNPHAW
                     SRWRRHHQHQARACHYRHQQLSSHDHDLRLEY"
BASE COUNT          348 a          616 c          632 g          319 t
ORIGIN      
        1 gcctccggcg aggccatcag caccagccaa accgaagacg ccagcgcctc ttcaatggat
       61 gaccacaaac cggggctggc ggccaaattc gtggtatctc ggaagacgcg cagcgcccgc
      121 tgtctgtacc agggtttggc aaaccgctct agtactccag tcgtagatcg tgatcatgtg
      181 agctgagttg ttggtggcgg tagtggcagg cgcgggcttg gtgttggtgg tggcgtcgcc
      241 agcgtgacca agcgtgtggg ttggtgagcc ggcgggtggg tttggtgatc agttcggtga
      301 acaggtgtcg gatctcgttg caggtcaggg cgatcagacc ctcgggtggt ggatgctggg
      361 cgcgttgggt tgcggcgatg accgcgagca gggcgtgggc gagcatggcc agcagggtcc
      421 agcgccgcca ggccagccag cgacgaacct ggtgttcatc gagcccggtc aggcctttgc
      481 cggcctgaaa actctcctcg atagtccatc gccgaccagc cacccggacc agttcgccaa
      541 gccggaccgg ggtcgggcta tagcagcggt agaaggcgag ttcaccgtgg cggaggtggc
      601 ggcggatgag cagccagtgc tgtcctgagt cggcagtcag actgacccaa gcccagtcgt
      661 agtagcgatg gcccttggcg ccccgaccgg cggagagccg cgcccaggct cccgggggaa
      721 ccgtggcggc cagggtgtcg gcgcgcatcg ggccggccgc ggtgggcaga cggcggtcgc
      781 agccgatggc cagcacatat ccgagttggc gggcctccag ttcggcgcgc agggcgggat
      841 cggcgccata gacttcatcg ccggcagccc accgtgctgg caccccggca tcgagcgcgc
      901 gagtgatcat ggcccgggcc agctgcggtt tggtggcgaa cttgacgtct tcgggtactc
      961 cggctcgggc gcaccgggcc gggtcgctgg tccaggattt cgggaggtac agctcccggt
     1021 cgatcatcgc gtgcccagcc tgccccgcat aggtcagata cactgcgacc tgggcgttct
     1081 ccaccctacc cgcggtaccg gtgtactggc gctgcacccc gaccgtcgcg gtgcccttct
     1141 tgatatcccc ggtttcatca accaccagca ccgcgcccgg atcacccagg tgctcggtga
     1201 cgtagtcacg cagatcatcg cgcactccat cggtatccca caccgcgcgg cccagcaggt
     1261 gctgcatgcc atccggcgtt gcatcaccag catgctcggc gatcgtccag caattcttcc
     1321 gcggcaggtc agccaacagt cctagaacaa accctcgaac tcggcgccga ggctccaccc
     1381 gcccaaaccg acccgctacc cgggcgagta actcatccaa catcgcctgc catcggccag
     1441 gctctacgct atgacccgcg gccaccacaa gatcgtctga cgtccacaca accgacgatg
     1501 atcaagcggt ggccgtccta cgcccaggac cgacacgccg caagatcacg atctacgact
     1561 ggagtactag ggcggacaag accgctcggt ccggctagga gggacgagct ctggtgacct
     1621 ggcggcgcag caccgtgact tcgtgacgca ggatcaggat ttcgatgtcc ttggccgcgg
     1681 tgctgcgcgt gagcgaccca agccagccac acaccgtgac acagatcagg tacagcagcc
     1741 gaaacagcgc ggcccgtgat catgtcatga tcacggggat gcaacgaaac accaggtcac
     1801 cacactggtg acgagttttg gcacggtaca agcctgatcg atgaagtccc agtgtggagc
     1861 acacgttcta gggtgctcgg gcggtcaggc cggacagatg ttttcggcct gcaga
//
LOCUS       DASVXZ010000170         3792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1184438, whole genome shotgun sequence.
ACCESSION   DASVXZ010000170 DASVXZ010000000
VERSION     DASVXZ010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184438"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(88..972)
                     /gene="urtB"
                     /locus_tag="VF788_03400"
     CDS             complement(88..972)
                     /gene="urtB"
                     /locus_tag="VF788_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HEX8933239.1"
                     /translation="MQALFSQLVAGLSLGSVLLLAALGLALTFGQMGVINMAHGEFMM
                     AGAYTAFIIQRGIADAGTSLLLAIPLGFLVGGVMGLILEATLIRRMYHRPLDTLLVTW
                     GVSLILQQAARDIFGAPNVDVRAPGWLSGSIDIGFTQVPAARLFILALAVAAVLGLSL
                     LLKTTPLGRRIRGVVQNRDLAETVGISTRSTDRLTFFIGSGLAGIAGVALTLLGSTGP
                     TLGTSYIVDAFLVVVAGGIGQIKGAVIAAFGLGLLQATFEYSTTANIAKVMVFVVVVV
                     FLQIRPQGIFSIRTRSLA"
     gene            complement(982..2214)
                     /gene="urtA"
                     /locus_tag="VF788_03405"
     CDS             complement(982..2214)
                     /gene="urtA"
                     /locus_tag="VF788_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033219 - urea binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter substrate-binding protein"
                     /protein_id="HEX8933240.1"
                     /translation="MNAAAVLMVVGLLSAGCGSRVGAAGAGGSSSSTCADTSGSSVKI
                     GFLNSLSGTMAISEKTVHDSLVLAAEQINSSGGVLGKQLSVISEDGASEPTIFAEKAG
                     KLISSDCVAAVFGGWTSASRKAMLPVFEGANSLLFYPVQYEGLEASPNIFYTGATTNQ
                     QIVPALDYLKQKGVKSLFLVGSDYVFPRTANKEIKAYAKANGIDIKGEEYAPLGHTDF
                     TTIVNKVKGAGAAAVFNTLNGDSNVAFFKEYRNAGLTPATMPVVSVSIAEEEIGGIGL
                     DNVVDQLTAWNYYQTIDSPKNAAFVQQFKAKYGQNRVTSDPMEAAYTSMFLWKVMVEK
                     AKSFTTNDVRNAADGVSYDAPEGTVTVNGENHHIAKTALIGKVGPDALIHTEWSSGSP
                     VQPDPFLKSYDWAKGLTG"
     gene            complement(2498..3112)
                     /locus_tag="VF788_03410"
     CDS             complement(2498..3112)
                     /locus_tag="VF788_03410"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HEX8933241.1"
                     /translation="MNSVWAAVAGAAAGAGGARMLRVTPRGVRVPVPVCAALVAVLWV
                     VVVQQADVGLPLWWWPVPLVLGWAGVLLGVADLVARRLPDVITLPAYPLVAVMLTLAA
                     IGAANNGLLLRAVAGALLWAGGYAMVRLLAPGALGGGDVKLAGSLGALAAATSWSGLV
                     LAVLAASVLTAVVALPARIIGYREVPHGPAMLAVAWLVVLHPPV"
     gene            complement(3218..>3792)
                     /gene="mltG"
                     /locus_tag="VF788_03415"
     CDS             complement(3218..>3792)
                     /gene="mltG"
                     /locus_tag="VF788_03415"
                     /inference="COORDINATES: protein motif:HMM:TIGR00247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEX8933242.1"
                     /translation="DPASHVEPRRRLEGLLVPGNYDVRPGSTARELLRQVTATSVARL
                     LASGFPPPSAELGYSSYELLVIASVIEREAITPDYRRVSRVIHNRLAAGMPLQMDSTI
                     NYPLDRQEASTSDADRARPGPYNTYLNVGLPASPIGSPSAAAISAALNPEPGNWRYFV
                     KCQKDGASCFSVTREEHDAAVRDAAARGVF"
BASE COUNT          763 a         1228 c         1131 g          670 t
ORIGIN      
        1 gcaacaacgc tactgcaccc agcacaaaaa ccaacagggt gccgtaattg cgcttgagct
       61 ttccggtaag tttcgcactg gtggccgtca cgccaggctc ctggtccgga tgctgaagat
      121 gccctgcggt cggatctgca agaagaccac caccacgacg aagaccatga ccttcgcaat
      181 attcgcagtg gtggagtact cgaatgtcgc ctgcagcaga ccgagcccga atgccgcgat
      241 cacggcgccc ttgatctggc cgatgccacc ggctacgacg accagaaagg cgtcgacgat
      301 gtaactggtg cccagagtgg ggccggtgga accgagcagg gtgagcgcta cccctgcgat
      361 ccccgcaaga ccggagccga tgaagaacgt gagccggtcg gtgctccggg tggagatgcc
      421 gaccgtctca gccaggtcgc ggttctgcac cacgccgcgg atccggcgtc ccaggggcgt
      481 cgtcttcaac agcaaggaca gcccgaggac ggcggccacc gcgagggcaa ggatgaacag
      541 gcgggccgcg ggcacctggg tgaacccgat gtcgatactg cctgatagcc agccgggagc
      601 acggacatcg acgttcgggg cgccgaagat gtcacgggcc gcctgttgca ggatcagtga
      661 tactccccag gtcacgagta gggtgtccag cggtcggtgg tacatccggc ggatcagggt
      721 ggcctccagg atcaggccca tgacgccacc cacgaggaac ccgagcggaa tagccagaag
      781 aagcgaggtc ccggcgtcgg ctattccgcg ctgaattatg aaagccgtgt aggcacccgc
      841 catcatgaac tcgccgtgtg ccatgttgat cacgcccatt tgcccgaaag tcagcgccag
      901 cccgagcgcg gcgagcaaca acactgagcc cagcgagaga ccggcgacca gttgactgaa
      961 cagggcttgc atgatctccc cttagccggt cagacccttg gcccagtcat agctcttgag
     1021 gaagggatcg ggctggaccg gggaaccgga gctccactct gtatggatca gtgcgtccgg
     1081 gccgaccttt ccgatcagcg ctgttttggc gatgtggtgg ttctcgccgt tgaccgtcac
     1141 ggtcccctcc ggggcgtcgt agctgacacc atctgcggca ttgcggacgt cgttggtcgt
     1201 gaacgacttc gccttctcca ccatcacctt ccacaagaac attgatgtgt atgccgcctc
     1261 catggggtca gaggtcacgc ggttctgacc gtacttggcc ttgaactgct gcacgaaagc
     1321 cgcatttttt ggagaatcaa ttgtctgata gtagttccac gcggtcagct ggtccaccac
     1381 gttgtccagg ccgattccgc cgatctcttc ctcagcgatc gacaccgaca ccaccggcat
     1441 cgtagccgga gtcaggccag cgttgcggta ttctttgaag aatgcgacat tcgaatcccc
     1501 gttgagcgta ttgaacaccg cggcagcccc ggcccctttc accttgttaa cgatcgtcgt
     1561 gaagtcagtg tgccctagcg gtgcgtattc ctcacccttt atgtcgatac cgttggcttt
     1621 agcgtatgcc ttgatctcct tgttagcggt acgcgggaag acgtaatcgg agcccaccag
     1681 aaacagagac ttgacaccct tctgctttag gtagtccagc gccggcacaa tttgctgatt
     1741 ggtggttgcc ccggtataga agatgttcgg cgaggcctcg aggccctcgt actgcaccgg
     1801 gtagaacagt agcgagttgg ctccctcgaa caccgggagc atcgccttgc gggaagccga
     1861 ggtccagcca ccgaagaccg ccgccacgca atcggagctg atcagcttcc cggccttctc
     1921 ggcgaaaatg gtcggctcgg aggcaccgtc ctcgctgata acgctgagct gcttgccgag
     1981 cacgccgcca ctggagttga tctgctcggc tgccagtacg agcgaatcgt gcactgtctt
     2041 ctcgctgatt gccatggtgc cggacaacga gttcaagaac ccgatcttca ccgaactgcc
     2101 ggaggtgtca gcacaggtgc tcgacgacga accacccgcc ccagcagcgc cgacccggct
     2161 gccacaaccg gctgacaaga gccctacaac catcaggacg gcggccgcat tcaacagccg
     2221 tttcctcgtc cgtagtctgc tcatttgcga ctcctctcca gccggggtcg gccgttccgc
     2281 gctaccgcca gattcctaac cccggtatgg ccactgctcg ccgggaccga aacaagtgca
     2341 ggtaaacgac tcgtgcctgc ggtgcaccgt aagaacgaga tgtgacagag agatttcgaa
     2401 attgagtcga cactgttacg tatcactatt ttgggtgatt atggcgttac tataagttat
     2461 ctaatctcga gttgatgccc tgataatcca gaaccgatta cacgggaggg tgtaggacaa
     2521 ccagccacgc tactgcgagc atcgccgggc cgtggggcac ctcacggtaa ccgattatcc
     2581 gcgcaggcaa cgccacaact gcggtcagca cgctagccgc cagcaccgcc agcaccagtc
     2641 ccgaccaaga cgtcgcagca gccagtgcgc ccaggctgcc agcaagcttc acgtcaccgc
     2701 cgcccagcgc ccccggtgcg agcagccgca ccatggcata gccgccagcc cacaacagtg
     2761 cgccagctac cgcgcgcagc aataggccat tattcgcagc tccgatcgct gcgagtgtca
     2821 gcatgacggc cacgagcgga taggcaggca gggtaatgac gtctggcaat cgccgggcga
     2881 ccaggtcggc gacccctaac aacacaccag cccagccgag caccagcggc accggccacc
     2941 accacagcgg tagacctaca tcagcttgtt gcacgaccac cacccagagc acggctacca
     3001 gcgcggcaca aaccggcacc ggcacccgta caccgcgagg tgtcacgcgc agcatcctcg
     3061 ctcccccggc acctgcagcg gctcctgcca cggcggccca cacactgttc acgcccgcca
     3121 gcttgccgcg cgcggcgggg cgaccggccg aatcccggct caggctgtgg attgcgggct
     3181 gaatgtggac aactccggga tctcccgcta ccgcaggtca gaacacaccg cgagcagcag
     3241 cgtcacgcac cgccgcgtcg tgctcctcac gcgtcacgga gaagcacgac gcaccgtctt
     3301 tctggcactt cacgaagtag cgccagtttc ctggttctgg gttcagcgcg gcagagatgg
     3361 ccgctgcact cggcgatccg atgggtgagg ctggcaaccc gacgttgagg taggtgttgt
     3421 acgggccagg cctggccctg tcggcatcgg acgtactcgc ctcctgccgg tcgagcggat
     3481 aattgatggt ggagtccatc tgcaagggca tcccggccgc gagccggttg tggatgaccc
     3541 gggaaacccg gcggtagtcc ggagtgatcg cttctcgctc gatgaccgat gcgatcacca
     3601 gcagctcgta gctgctgtaa cccagctctg cactgggcgg gggaaatcca ctagccaata
     3661 gccgggccac ggacgtggcg gtgacttgcc gcaatagttc cctcgcggtg ctgccagggc
     3721 gcacatcgta gtttccgggg accagcaggc cctccaaacg tcgtcgaggt tcgacgtgtg
     3781 aagccggatc ga
//
LOCUS       DASVXZ010000171         6359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_467205, whole genome shotgun sequence.
ACCESSION   DASVXZ010000171 DASVXZ010000000
VERSION     DASVXZ010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6359
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467205"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1590
                     /locus_tag="VF788_03420"
     CDS             130..1590
                     /locus_tag="VF788_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8933243.1"
                     /translation="MGTPAGRWVLLATITGSGMAMLDATVVNIALPSIGREFSADFRT
                     LQWIVNSYTLTLAALILLAGALGDHFGRRRVFIAGVVWFALASLLCGLAPTAEVLVAA
                     RALQGIGGALLTPGSLAIISSSFVTEDRARAVGAWSGLGGVATAIGPFLGGYLVGLNW
                     RLVFLVNLPVAAFIVVTSLRHVPESFDEQSPPGLDVVGAVLTAAGLAGVTYALTSLGG
                     GAGGMAVAVTGVGGLAALLAFVQVERRSPHPLVPLGLFTDRRFSVANAVTLLVYAGLG
                     VFFFLLVLHLQIVAGFSPLAAGTALLPVTALMLLLSARAGALAERIGPRIPMSVGPLL
                     AAAGFLLTLRIGRGASYLGDVLPAVVVVGLGLSLTVAPLTATVLGSADPRYAGTASGV
                     NNAIARAGGLLAVAVIPVAAGLGDTDYTRPTSFEAGFHPAMLISAGLLALGSLLAAVL
                     LHEPRPVPVSAPTERIPLERCSHCGVTGPQLHPSVR"
     gene            complement(1587..2456)
                     /locus_tag="VF788_03425"
     CDS             complement(1587..2456)
                     /locus_tag="VF788_03425"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8933244.1"
                     /translation="MGGVLAVAIAGPGEPGAAALVLGVHGITGSHLLLGVVARHLAAR
                     GITFLVPDLRGRGASAALPGPYGLDAHVTDLVAVLDHWGAEQAVLAGHSMGAYIVGRL
                     AAAQPGRCAGVVLVDGGLPLAVPEHADPDVVLEAVLGPALTRLRMTFASPEDYREFWR
                     RHPAFAHHWNADVQSYVDYDLDGPPGCLRSKVVEAAVRVDGRDQLEVAAIRAAVAAMP
                     EPLVLLRAPRGLADEPTPLLPEAVVNEVKRTLPGLRDVLVDDTNHYLIVLGDREAAVV
                     ATEIVRMTSGADP"
     gene            complement(2531..2971)
                     /locus_tag="VF788_03430"
                     /pseudo
     CDS             complement(2531..2971)
                     /locus_tag="VF788_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020486722.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deaminase"
     gene            complement(3015..3206)
                     /locus_tag="VF788_03435"
     CDS             complement(3015..3206)
                     /locus_tag="VF788_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEX8933245.1"
                     /translation="MRVEVDLNICEGHGQCNAVAPEIYDLDDGGYCLIRNPEVPPGLE
                     PQAEEGARACPVQAITVTH"
     gene            3669..4091
                     /locus_tag="VF788_03440"
     CDS             3669..4091
                     /locus_tag="VF788_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933246.1"
                     /translation="MDRRVRRAVLERLAAVEEMAVRAGATLSAPLARRHIRTITDGWR
                     ELLVQHQPDPTGRCPVCSGWLRRRRWPCDVWVTAHRHLIGDGTESIERSSRNSNPFCQ
                     PRQMLIVPRQLDAHVIKSAPARTASSHGQSDKGSTQRA"
     gene            4162..>6359
                     /locus_tag="VF788_03445"
     CDS             4162..>6359
                     /locus_tag="VF788_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933247.1"
                     /translation="MPEQIAAHRGWIRRLGAACWRHPRLTVTALLASGIGVGTEAIAP
                     LLTRLAVDDAVAGTTGRLGWLVTALGGVALLHFGTAFVRRYLGGRLSLDVQHDLRNAV
                     FRAVQKLDGAKQDSLRTGQVVSRAISDLQLVQGLLSIVPLTAGVLVLFAAALVAMLWL
                     SPLLTLIALIVIPATALVTTRTRRTLFPATWSAQQRAGDIAEHVEETVTGVRVVKGFG
                     QEARAVSRLEDRARQLFAERIRAARLTATFAPTLTALPSLGQVAVFALGGMLALNGSI
                     SLGTFLAFAAYLAMLVGPARLIASLVVLAQLARAGVERVYEVIDSQPEVRDAPDAIDV
                     PDGPLAVQLGEVRFGYTRTEPVLDRLSLRIEPGETLALVGTAGSGKSTVSLLLARFYD
                     PQQGAIRIGPPGRTVDVRQLRLASLRRAVGMVFEEAFLFSDTVRANIAYGCPDATDEQ
                     VRRAATAASAHEFIAALPQGYDTQIGERGLTLSGGQRQRIALARALLFDPRVLVLDDA
                     TSAVDAVTEAAIHTTLRMVTARRTTLLIAHRRSSLALANRIAVLEGGRVVDVGTQDEL
                     STRCALFRALLAGPDEVIENVTAAPAGLPHPSPVGGVTAQLWPVVALTDSDDTTRTTL
                     PAQSAGGAMRGGFAGGGGRGGMAAGMVGSVGPTPELLAAVAALPPARAVPKLGGVDPT
                     IPDPGFRLSRLLRPMRGWLFLTAVLVGLDALATVAFPALAGLAVDAITRHA"
BASE COUNT          889 a         2096 c         2260 g         1114 t
ORIGIN      
        1 cgtgccggag aatgggaccc agcaataacc gagcgggcga gatagccacc ggttctgcct
       61 acccgactcg ccgctggtgc gcgacactag ggtgcaatgg tgacgaatcc ttcctcgacg
      121 agggcgagga tgggaacccc cgccggtcga tgggtgctgc tggcgacgat cacgggctcg
      181 gggatggcaa tgctcgacgc cacggtggtg aacatcgcgc tgccctcgat cggccgtgaa
      241 ttcagcgcgg atttccgaac tctgcagtgg atcgtcaact cctacaccct cacgctggcc
      301 gcgctgatcc tgctggccgg cgcgctcggg gaccatttcg gtcggcgccg ggtgttcatc
      361 gcgggagtgg tgtggttcgc cctcgcctcg ctgctgtgcg ggctggcgcc caccgcggag
      421 gtacttgtcg ccgcccgagc gctgcagggc atcggtggag ccttgctcac tccgggcagc
      481 ctggcgatca tctcttcgtc gttcgtgacc gaagaccggg ccagagcggt gggcgcctgg
      541 tccgggctcg gtggcgtcgc caccgcgatc ggtccgtttc tcggcggtta cctcgtcggg
      601 ctgaactggc gcctggtgtt tctggtgaac ctgccggtcg cggccttcat tgtggtgaca
      661 tcgctcaggc atgtgccgga gagcttcgac gagcagagcc caccggggct ggacgtcgtt
      721 ggtgcggtgc tcaccgcggc cgggctggct ggtgtgactt acgcgctgac cagcctcggt
      781 ggcggcgccg gcggcatggc agtggcggtc accggcgttg gggggcttgc cgcgttgctg
      841 gctttcgtgc aggtcgagcg ccgttcgccg caccccctgg tgccactggg gctcttcacc
      901 gaccgtcggt tcagcgtggc caacgcagtg acgttgctgg tgtatgcggg gctcggggtg
      961 ttcttcttcc tgctcgtact gcatctgcag attgtggccg ggttctctcc cctggccgcc
     1021 ggcaccgcgt tgctgcccgt caccgccctg atgttgctac tgtccgcccg agcgggtgcg
     1081 ctcgccgagc ggatcggccc ccggataccg atgtcagtgg gaccgctgct ggccgccgcg
     1141 ggtttcctgc tgaccttgcg gatcgggcgc ggggcctctt acctgggcga tgttctcccg
     1201 gcagtggtgg tggtggggtt ggggctctca ctcaccgtgg cgccactcac cgctaccgtg
     1261 ctgggctcag ccgatccgcg ttacgccgga actgcgtcgg gagtgaacaa cgcgatcgct
     1321 cgcgcgggcg gcctgctagc cgtcgcggtg attccggtag cggcgggctt gggtgacacc
     1381 gactacaccc gtccgacgtc cttcgaagcc ggcttccacc ccgcgatgtt gatcagcgcc
     1441 ggcctgctgg cgctgggctc cttgctggct gcggttctgc ttcacgaacc ccgcccggtg
     1501 cccgtctccg ctcccaccga gcgcatcccg ctggaacgct gttcccactg cggcgtcacc
     1561 gggcctcagc tgcacccttc ggtgcgctaa gggtcggcgc cagaggtcat ccggacgatc
     1621 tctgtggcca cgacagccgc ctcccggtca ccgagcacga tcaggtagtg gttcgtgtcg
     1681 tcgacgagca catcacgcag cccaggcagg gtgcgcttga cctcgttgac gaccgcctcg
     1741 ggcagcagcg gggtgggctc gtcggcgagg ccgcggggcg cccggaggag gaccagcggc
     1801 tcgggcatcg cagccaccgc cgcccggatt gctgcaacct cgagctgatc gcgtccgtcg
     1861 acccgcacgg ccgcctcgac cacctttgag cgcaggcagc cgggtggccc atccaggtcg
     1921 tagtccacat agctctgcac gtcggcattc cagtggtggg cgaaggcggg gtggcggcgc
     1981 caaaactcgc ggtagtcctc tggagaggcg aaggtcatcc ggaggcgggt gagggccggg
     2041 ccgaggacgg cctcgaggac aacgtcgggg tctgcgtgct cgggcactgc cagtggcagc
     2101 ccgccgtcga ccagcaccac tccggcgcag cgccccggtt gggcggcagc caggcgaccg
     2161 acgatgtagg cgcccatcga atgaccggcg agaacggcct gctcggctcc ccagtggtcc
     2221 aggacggcca ccaggtcggt cacgtgggcg tcgaggccgt agggtcccgg cagggccgcg
     2281 ctggcaccgc ggccgcgcag gtcgggtacc aggaaggtga tgccacgggc cgccaggtgg
     2341 cgggccacca cccccagtaa gaggtgtgat cccgtgatgc cgtggacgcc cagtaccagt
     2401 gcggcagcgc ccggttcacc agggccggcg atggcgacag ccaaaactcc acccacgact
     2461 gggacttcta tcttggtgtg aaatgcggtg accgccatca acgagctctt ggtgcggaga
     2521 ccaacacttg tcaagattcc cataggtgtt cgtttgtatg gcgcaccaga tgggcgagat
     2581 cgggtatttc cacgacattc cggccagcgg cgcgaaggag ttcggtgccc tggcagtcga
     2641 cgaacaggtt gggttcgcgc caggcgaaga cgatccgcgg aatcggggtg gcgaggatga
     2701 gttcagtgca gctgaccggc cgtgaggcgc gagtgctgca cggttcgagc gagctgtaga
     2761 gcgtggctgc agccaagcgg gtgtcgtgtg gcgcgagctt ggccagagcg gcctcctctg
     2821 cgtggtcgtg ggggtctgtc tcgcgggagt aaccggtggc aatcacagca ccgccggtat
     2881 ccacgatcac cgcgccgacc gagaaggccg tccgcgacgg ggggcaactg ttcgccagtt
     2941 cgatggcacg ccgcaagtac cggcgatccc gatcgaccct gagcgctgtc atcacggagc
     3001 tcctgccggg tggctcagtg ggtgacggtg atggcctgca cggggcaggc tcgggcgcct
     3061 tcctctgctt ggggctccag gccgggcggg acctccgggt tgcgaatcag gcagtacccg
     3121 ccgtcgtcca ggtcgtagat ctcgggcgcg acggcgttgc actgaccgtg gccctcacag
     3181 atattgaggt cgacctcgac gcgcacggcg ccctcctcgg cttcggtcct ggcgtggtgg
     3241 gacgtgcggc cattttggcc tcgatggtca cggctccaca caccagggat ccctcactac
     3301 gggggactat cacccgaaat acttaggcaa tcgggtgcac tttgagccga cgtgtatctc
     3361 accggcgtcg ggtgatttgc ggctcgacgg gcgagccagc gcagatcaat cccgttcctt
     3421 cgtcgcccta cgaggggctt gaactgggga tatgactctt catcgagaaa cccgatgact
     3481 tgccgagccc gctgatggcc ggccacggcc gatcggattg agcggcacga caccagggtg
     3541 aggggcctta agtccacgag cgaagtccgg tagacagtgc actgcggcgt gacggcagct
     3601 cggctgggtc gttaacgtgg cgagtgcgct ctaggggctg ttggggggag cgacaaggag
     3661 gtcggtaggt ggatcgtcgg gtgcgacgtg cggtgctgga acgtctggcg gcggttgagg
     3721 agatggccgt gcgggcaggt gcgacgttgt cggcgccgct agcgcgcagg cacatccgga
     3781 ccatcacaga cggttggcgc gagctgctcg tccagcacca gccggatccc actggccgtt
     3841 gccccgtttg ctcgggatgg ctacgccgcc gccgctggcc ctgcgatgtg tgggtgaccg
     3901 cgcaccgtca cctcatcggt gacgggaccg agtcgattga acgatcttcc aggaactcca
     3961 accccttctg ccagccgcgt cagatgttga tagtgccgcg ccagctcgac gcgcacgtca
     4021 tcaagtcggc tccggcgcga accgcctcct cgcacggcca gagcgacaag ggctcgactc
     4081 aacgagcctg acctttggtt ggctactgga gtccaccgta cctctgcgac agtgtcgggc
     4141 tagccacata gcctggcagt cgtgcccgaa cagatcgctg ctcaccgcgg ctggatccgc
     4201 agacttggag cagcctgctg gcgccatccc cgcctcactg tgacggcgct gctggcatcc
     4261 ggtatcgggg tcggcacaga ggcgatcgcc ccgctgctca cccggcttgc ggtggacgat
     4321 gctgtggcgg gtactaccgg gcggctgggc tggctggtca ccgcgctggg cggggtagcg
     4381 ctgctgcatt tcgggaccgc ctttgtacgc cgttatctcg gcggccggct gtccctggac
     4441 gtgcagcacg acctgcgcaa tgccgtattc cgcgctgtgc agaagcttga cggcgccaag
     4501 caggacagcc tgcgcaccgg gcaggtcgtg tcccgtgcca tctccgatct gcagttggtg
     4561 cagggactgc tctcgatcgt gccgctgacg gcgggagtgc tggtgctctt cgccgctgcg
     4621 ctggttgcga tgctgtggct ctcgccgctg ctgacgctta tcgcgctgat cgtgataccg
     4681 gcgacggcgt tggtcaccac ccggacgcgg cgcacactgt ttccggcgac ttggtcggcc
     4741 cagcaacgcg caggtgacat tgccgagcat gtcgaggaga cagtcaccgg ggtgcgggtg
     4801 gtcaagggct tcggccagga ggcccgggcg gtgtcccggc tcgaggaccg ggctcgtcaa
     4861 ctgttcgccg aacggatccg cgcggcccga ctgaccgcga cgttcgcccc caccctgacc
     4921 gcgttgccgt cgctgggtca ggtggcggtc ttcgccctgg gcggcatgct ggcgctgaac
     4981 gggagtatca gcctggggac gtttctagcg ttcgctgcct acctggcgat gctcgtcggt
     5041 ccagcccgat tgatcgccag cctggtggtc ctcgcgcagc tggctcgagc cggggtggag
     5101 cgggtctacg aagtgatcga ctcccagccg gaggtgcggg atgcgccgga cgcgatcgac
     5161 gtcccggatg ggccgctggc ggtgcaactg ggcgaggtcc gcttcggtta cacccgcacc
     5221 gagccggtgc tcgaccggct gtccctgcgc attgagccgg gtgagacgct ggcgctggta
     5281 ggcacggccg gctccggcaa gtccaccgtc tcgttgttgc tggcccgctt ctacgatccg
     5341 cagcagggcg cgatccggat cgggccgccc ggccgtaccg tcgacgttcg gcagctgcga
     5401 ctggcgtcgc tgcgccgtgc ggtggggatg gtgttcgagg aggcgttcct gttctccgac
     5461 accgtccggg ccaacattgc ctacggatgc ccggacgcca ccgatgagca ggtgcgcagg
     5521 gcagcgaccg cggcatctgc ccacgagttc atcgccgcat taccgcaggg ctatgacacc
     5581 cagatcggcg agcggggact cactttatcc ggcgggcagc gccagcggat cgcgctggcc
     5641 agagcactgc tgttcgaccc ccgggtgctg gtgctcgacg acgccacttc cgccgtcgac
     5701 gccgtcacgg aagccgcgat ccacaccacc ctgcggatgg tcaccgcgcg gcgcaccact
     5761 ttgctgatcg cgcaccgccg gtcctcgctg gcactggcca accggatcgc ggtactcgag
     5821 ggcgggcggg tggtcgacgt aggaacccag gacgagctga gcacccggtg cgcgctgttc
     5881 cgtgccctgc tcgcggggcc cgacgaggtg atcgagaatg tcaccgccgc cccggccggc
     5941 ctgccccatc cgagtccggt cggcggcgtc accgctcaac tctggcccgt cgtcgcgctg
     6001 acggactccg acgacaccac gcggacaacc ctgcctgcgc agagcgcggg aggggccatg
     6061 cggggtgggt tcgccggcgg tggggggcgg ggcgggatgg cggccggcat ggtcggcagc
     6121 gtcgggccga ctccggagct gctcgcggcg gtggcggcgt tacccccggc gagagctgtg
     6181 cccaagctcg gtggagtcga cccaaccatc cccgatccgg gcttcaggct cagccgacta
     6241 ctccggccga tgcggggatg gctgttcctt accgcggtcc tggtcgggct cgacgccttg
     6301 gcgaccgtgg cgttcccggc gcttgctggc ctcgccgtcg atgccataac ccggcacgc
//
LOCUS       DASVXZ010000172         2809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1184520, whole genome shotgun sequence.
ACCESSION   DASVXZ010000172 DASVXZ010000000
VERSION     DASVXZ010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184520"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VF788_03450"
     CDS             complement(<1..576)
                     /locus_tag="VF788_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX8933248.1"
                     /translation="MTVTVGDSAEDRTTTARVDVYFDPRCPWAWITSRWILEVAAVRD
                     IEVHFRVMSLAVLNEDHELSEGYRNMVDQAWGPVRVCIAAARDHGEKVLEPLYTAMGR
                     RIHNEGNKDLDEVIAAALAEVGLPPQLAEAARSTDYDAELRASHKAGMDPVGLDVGTP
                     TIHVDGVAFFGPVLTRIPRGDDAVKVWDGAQL"
     gene            712..>2809
                     /gene="pepN"
                     /locus_tag="VF788_03455"
     CDS             712..>2809
                     /gene="pepN"
                     /locus_tag="VF788_03455"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HEX8933249.1"
                     /translation="MAVPNLTQEQAVERAALLDVESYTVELDLTDGAGRPGEGTFRST
                     TTVRFSCRAPGASSWIDLVAARVSVATLNGTILDIADYDEAKGITLPTLAADNEVIIE
                     AEGRYMNTGEGLHRFTDPVDGGVYLYSQFETADAKRMYACFDQPDLKAVHRIRVVAPA
                     DWLVISNAPCQRAEQLEFGGVRHVFADSARISPYIVALVAGPFAQWTDEYSDEEGTIP
                     LGIYCRASLAEHMDAERLFTETKQGFGFYHQAFGRRYPFEKYDQCFVPEFNAGAMENA
                     GCVTFLEDYVFRSRVTRYLYERRCETVLHEMAHMWFGDLVTMRWWDDLWLNESFATWA
                     SVLCQAQATEYTGAWTTFATVEKSWAYRQDQLPSTHPIACEIPDVQAVEVNFDGITYA
                     KGASVLRQLVAYVGLDEFLAGLRIYFTRHAWGNATLADLLAALEQASGRDLSGWSAQW
                     LETTGLNTLRPEFTLDGGGSFASFAVVQGGARPGSGERRTHRLAVGVYDSPSSDSAVG
                     AALVRTHRVELDVSGERTEVPALIGVPAGQLVLVNDDDLTYCTMRLDETSLATLVDRI
                     GDIAESLPRTLCWSAAWEMTREAEFKARNFVAVVLGGLPAETEVGVVQRLLAQAQLAL
                     SSYAEPSWAAEEGWPRFTNTLMKLINTAEAGSDHQLALVNALSAALLGKPELDALAGW
                     LVGDGVPEGLSVDTDLR"
BASE COUNT          457 a          950 c          913 g          489 t
ORIGIN      
        1 cagctgggcg ccgtcccaga ccttgacggc atcgtcgccg cgcgggatcc gggtgaggac
       61 ggggccgaag aaggcgacgc cgtcgacgtg gatcgtcggg gtgccgacat ccagaccgac
      121 cggatccatg ccggccttgt ggctggcccg gagctccgcg tcgtaatcag tgctgcgcgc
      181 ggcctcagcc agctgcggag gcagccccac ctcggccaac gcggcggcga tcacctcatc
      241 gaggtccttg ttgccctcgt tgtggattcg gcggcccatc gcggtgtaga gcggttcgag
      301 caccttctcc ccgtggtcgc gggccgcggc gatgcacacc cgcaccggcc cccaggcctg
      361 gtccaccatg ttccggtagc cctcgctgag ctcgtggtcc tcgttgagca ctgccagact
      421 catcacccgg aaatgcacct cgatgtcgcg cactgccgcg acctcgagaa tccagcggga
      481 ggtgatccac gcccatgggc accgcggatc gaagtagaca tccacccggg cggttgtggt
      541 tcggtcttca gcgctgtcgc cgacggtcac cgtcatgaca ctccccgttc ctcgtcgcgt
      601 agtacaaccc gtccgggtgg tcacctcttc cccgctccta actcgcctgc agccatgccc
      661 aggcccatga ttggatgccc caagaccccc atctgacacc cgaggtgatt tgtggctgtc
      721 cccaacctca ctcaggagca ggccgtcgag cgtgccgcgc tgctagacgt cgagtcctac
      781 accgtcgagc ttgatctcac cgacggtgcc ggcaggccag gcgaggggac gttccggagc
      841 accaccacgg tccgcttctc ctgccgcgcc cccggcgcgt ccagctggat cgatctggtg
      901 gccgctcgag tcagcgttgc gaccctcaac gggaccatcc tcgacatcgc cgactacgac
      961 gaggccaagg gaatcacgct gccaaccttg gccgcggaca acgaggtcat catcgaagcg
     1021 gagggccggt acatgaacac cggcgaggga ctgcaccgct tcaccgatcc cgtcgatggc
     1081 ggcgtgtatc tctacagtca gttcgaaacc gccgatgcca agcggatgta cgcctgcttc
     1141 gaccaaccgg atctcaaggc ggtgcaccgt atccgggttg ttgcgcccgc ggactggctg
     1201 gtgatctcca acgcgccctg ccagcgcgct gagcagctcg agtttggcgg tgtgcgccat
     1261 gtcttcgccg acagcgcccg gatcagcccc tatatcgtgg cgctggtagc cggtcccttc
     1321 gcgcagtgga ccgacgaata cagcgacgag gagggcacga tcccgctggg catctactgc
     1381 cgcgcctcgc tagccgaaca catggacgcc gaacgcctgt tcaccgaaac caaacaaggt
     1441 ttcggcttct accaccaggc attcgggcgc cgctacccgt tcgagaagta cgaccagtgc
     1501 ttcgtacccg agttcaacgc cggagcgatg gagaacgccg gttgcgtgac gttcctggag
     1561 gattacgtct tccgcagccg ggtgacccgc tacctctacg agcggcgctg cgagacggtg
     1621 ctccacgaga tggctcacat gtggttcggc gacctggtga ccatgcggtg gtgggacgac
     1681 ttgtggctca atgagtcctt cgccacctgg gcctcggttc tgtgccaggc gcaggccact
     1741 gagtacaccg gcgcgtggac caccttcgcg accgtggaga agtcctgggc gtaccggcag
     1801 gaccagctgc cctccaccca tccgatcgcc tgcgagatcc ccgacgtaca ggccgtcgag
     1861 gtgaacttcg atggcatcac ctacgccaag ggcgccagcg tgttgcgcca gctcgtcgcc
     1921 tatgtcggcc tggacgaatt cctcgcgggt ctgcggatct atttcacccg gcacgcttgg
     1981 ggcaacgcca cgctcgcaga cctgctggct gcgctggagc aggcctccgg ccgtgacctg
     2041 tcgggctgga gcgctcaatg gttggaaacc actgggctca atacgctgcg accggagttc
     2101 accctcgacg gtggcggctc attcgcctcc ttcgcggtgg ttcaaggcgg cgctcgccct
     2161 gggagcggag agcgccgcac gcaccggctc gccgtcggcg tctacgactc ccccagcagc
     2221 gactccgctg tgggcgccgc gctggtgcgg acgcatcgag tggagctcga cgtcagcggg
     2281 gagcgcaccg aggttcccgc gctgatcggg gtcccggcgg gccaactcgt gctggtcaac
     2341 gacgatgacc tcacctactg cacgatgcgg ctcgacgaga cctcgctggc gacgctagtc
     2401 gaccggatcg gtgacatcgc tgagtcgttg ccccgcacgc tgtgctggtc agcggcgtgg
     2461 gagatgaccc gcgaagccga attcaaagcg aggaacttcg tcgcggtggt gctgggcggg
     2521 ttgcccgccg agaccgaggt gggcgtcgtg cagaggttgt tggcgcaggc acagcttgcg
     2581 ctgtcctcct atgccgaacc gagttgggcc gccgaggagg gctggccgag gttcaccaac
     2641 acgctgatga agctcattaa caccgcggaa gccggctccg accaccaact cgctctggtg
     2701 aatgcgttga gtgcggcgct gctgggtaag ccggaactgg atgcgctggc cggctggttg
     2761 gtcggggatg gcgtgcctga ggggctgtca gtggacaccg acctgcgct
//
LOCUS       DASVXZ010000173         2639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_288009, whole genome shotgun sequence.
ACCESSION   DASVXZ010000173 DASVXZ010000000
VERSION     DASVXZ010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288009"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VF788_03460"
     CDS             complement(<1..503)
                     /locus_tag="VF788_03460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEX8933250.1"
                     /translation="MDVQMIALVIAGADALGVVVWMLAKLGKALIKLAEALAAAAAVL
                     FTLWLLIKAIVWALRQVLTHWRTSLALVALGAWWHWWGWESLALTIGVVAGVLTGWRL
                     ADLASFDAWAGRHLRAWWLRWTVYSPKLPQWLHACGLSIKPDATPVVVTVNPLGRSIR
                     RGRCQTQA"
     gene            complement(993..1247)
                     /locus_tag="VF788_03465"
     CDS             complement(993..1247)
                     /locus_tag="VF788_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMED_5909 family protein"
                     /protein_id="HEX8933251.1"
                     /translation="MNKTTKPRPPQTLMQAHEELVRTRPCPKASLPVWLSYYHHSVEV
                     YEHIAKTDPGHDGEALYWAGRERVHARAIEARIRVLGTGE"
     gene            complement(1263..1529)
                     /locus_tag="VF788_03470"
     CDS             complement(1263..1529)
                     /locus_tag="VF788_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005459076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMED_5909 family protein"
                     /protein_id="HEX8933252.1"
                     /translation="MTTNKTSTPAMPRTLAEAHEAVAAIRPPRTASLPEWLAHHQRSA
                     ALYAEIAEIDRGHHHEALFMAEREHQRAKEIKTEISSQQPTGET"
     gene            complement(1526..1930)
                     /locus_tag="VF788_03475"
     CDS             complement(1526..1930)
                     /locus_tag="VF788_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933253.1"
                     /translation="MSLKRGHGEVTRVRSAGREGPRASRPVSGPPQRDAHLVSGSPGD
                     VMASEKTTRVWEAAYRQYGRAWEATARSGKSDPAAAREMAAASWAVAAAWRQIASATT
                     LPWWTLAAVESAAGAFESQARDYETGNTSEEP"
     gene            complement(1927..2406)
                     /locus_tag="VF788_03480"
     CDS             complement(1927..2406)
                     /locus_tag="VF788_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933254.1"
                     /translation="MAIPRGYRFDVEFDSAFPQGLVLIGDVAPDNEYQTREERAVGRP
                     VRQKIDQITGKRQWKATVTDPDEPSAKRASFEITLIAEVQPVPTTTEVLPGMRPIELD
                     GLTAEPRVAGNGEFKYQSYLFRATGFTATTSAAGTRPSQSIKLSGAAGSGEQPGKAA"
BASE COUNT          393 a          884 c          816 g          546 t
ORIGIN      
        1 gcttgcgtct ggcaccggcc gcgacggatg ctgcggccga gggggttcac ggtcaccacc
       61 acgggtgtgg cgtcgggttt gatgctcaga ccgcaggcgt gcagccactg aggcagcttg
      121 ggggagtaca ccgtccagcg cagccaccag gcccgcaggt gccggcctgc ccacgcgtcg
      181 aaggacgcca ggtcggccag tcgccatccg gtgagcactc cggcgaccac gccgatggtc
      241 agggccagtg actcccagcc ccaccagtgc caccaggctc ccagcgcgac cagtgccagg
      301 ctggttcgcc agtgcgtgag cacttggcgc agcgcccaca cgatggcctt gatcagcagc
      361 cagagggtga agagcaccgc tgccgctgcg gccagtgctt ccgcgagctt gatcagggcc
      421 ttgccgagct tggccagcat ccagaccacg acgcccagcg cgtcggcacc ggcgatcacc
      481 agtgcaatca tctgcacgtc catcaccgat caccccggat ctgcaccgag gcgatcggga
      541 actgctgttg ttcggtgctg ttctcttttg taccggggag ggggcttgcg cccggcccgg
      601 cgggtctgcg tatcctcatt actgttcact cctgactcgg gtggacagcg cagaagcgga
      661 caggttggta gccagagatt ccgcttctgc gcgtacgtcg gtcttacaat tgatgaggcc
      721 gtgcggcatt accgcgccac cccggcgcgg taaattactt tcctgcgctt cctgttgtgg
      781 ggtgtgttta tcgcaggctg cggcagccac cgcagatcgg ctcaggaccg accggcagga
      841 ccgagaagct tccgcatctg cggcaggttt gccaggtcag ccgaatccgc catcggcgcg
      901 cccgtcgctg cgctagcagc gcaacccacc acctgcacca actcatcacc tccctactac
      961 ccttccttaa aagtcgtttc ctatgccgtc gtttattcgc ctgttcccag tactctgatc
     1021 cgggcttcga ttgcccgtgc gtggactcgt tcccgccccg cccagtacag ggcttcgccg
     1081 tcgtgtccgg gatcggtctt ggcgatatgt tcgtacacct ccaccgagtg gtggtaatag
     1141 gaaagccaca ccggtaatga cgccttcggg cagggccgag tacgtacgag ctcctcatga
     1201 gcctgcatca acgtctgtgg cggtcgcggc tttgtggtct tgttcacggt cctctccctg
     1261 ccttatgttt cacctgtcgg ttgctgggag gaaatctcgg tcttgatttc ctttgcacgc
     1321 tggtgttccc gctcggccat gaatagcgcc tcgtgatggt gaccccgatc aatctcagcg
     1381 atctcggcgt acaacgccgc cgagcgctgg tgatgcgcta accactcggg cagcgatgcc
     1441 gtccgaggtg ggcgaatagc ggccaccgct tcatgagcct ccgcgagcgt gcggggcatc
     1501 gcaggtgtgc tggttttgtt cgtggtcatg gttcctcgct ggtgttgccg gtttcgtagt
     1561 cgcgtgcttg ggactcgaag gcacctgcgg ccgactcgac ggccgccaag gtccaccagg
     1621 gcaaggtggt ggcgctggcg atctgccgcc aggccgccgc caccgcccag gacgccgcag
     1681 ccatctctcg tgctgccgcg gggtcgctct tgccggatcg cgctgttgct tcccaggcgc
     1741 ggccgtactg ccggtaggcc gcctcccaga cacgggtcgt cttctctgat gccatcacgt
     1801 cgcccggtga gcccgacacg aggtgcgcat cgcgctgcgg tggaccggag accggccggg
     1861 aagcccgagg accctcccga ccagcactcc gaacccgcgt gacctcgccg tggcccctct
     1921 tgaggctcac gcggccttgc cgggctgctc accgctcccg gcggcaccgc tcagcttgat
     1981 cgattgcgac ggccgcgtcc cggcagcact ggtcgtcgcg gtgaagccgg tagcccggaa
     2041 gaggtaggac tgatacttga actcgccgtt gccagcgact cggggttccg ccgtcagccc
     2101 atcgagctcg atcggacgca tacccggcag gacttccgtg gtcgtcggaa ccggttgcac
     2161 ctccgcgatc aaggtgattt cgaacgacgc tcgtttggcg ctgggctcgt ccgggtcggt
     2221 gaccgtggct ttccactgtc gcttaccggt gatctgatct atcttctgcc gcaccgggcg
     2281 gccgactgcc ctttcctcgc gggtttggta ttcattgtcc ggcgcgacat cgccaatgag
     2341 aaccaggcct tgcggaaacg cactgtcgaa ctcgacgtca aatcggtatc ctctggggat
     2401 cgccatgaac gttgcccttc tgactcgctg tcggtgtggt tgccgcccct gtcggtggcg
     2461 acatcactag attcgtccag gtcaggtccg ttctcgacct cgcgatcgtc tcttctccga
     2521 cttctgttcc tcctcttgtc tcgcggagtc tctcgaatgt gctagtctcg tctcgctccg
     2581 cagcgaagga ggatcgctac cgttggacgc taagcccgtc gtgctgaagg tgttactcc
//
LOCUS       DASVXZ010000174         4292 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1443983, whole genome shotgun sequence.
ACCESSION   DASVXZ010000174 DASVXZ010000000
VERSION     DASVXZ010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4292
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1443983"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1478
                     /locus_tag="VF788_03485"
     CDS             <1..1478
                     /locus_tag="VF788_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933255.1"
                     /translation="LRIRSFAHLQRLGLDYFEREMAGRIMTRMTTDVDALSTFLQTGL
                     STALISVLTVVGVAIALLVTDTGLAVVAMLGLPVLIVATVVFQRLSSVAYAEARERVS
                     EVNADLQENVSGARVAQAFTRERRSAREFSARSDAYRRARLRAQRYIATYFPFVALLS
                     DLATATVLGVGAYRVATGTVTAGVLTAFLLYLGLFFAPVQQLSQVFDGYQQAAVGLRR
                     IRELLDTPTSVPPPGADAVPVPARLRGEVELREVTFSYPGSALPALAEVSLRIAPGET
                     VALVGATGAGKSTVVKLLARFYDPTAGTVLIDGTDLRHFDPAAFHHRLGVVPQEPHLF
                     RGDVADNIGYGAPETSPAQIEAAARRIGALEAIAALPNGFRQPVGERGQGLSAGQRQL
                     IALARAELVEPDLLLLDEATAALDPATESVVLAAADRLAARRTTVVIAHRLITAAKAD
                     RIVVLDGGRIVEQGRHLELLTADGLYARLWAAGSPDGTVAA"
     gene            1814..>4292
                     /locus_tag="VF788_03490"
     CDS             1814..>4292
                     /locus_tag="VF788_03490"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HEX8933256.1"
                     /translation="MYDQFLANPSAVDSSWHDFFADYQPAVPGDNGVVPRTDAPAPSV
                     SPLASSARATTQTTLPATTPVELPHDTTTPLRGAAARVVANMETSLELPTATSVRAVP
                     AKLLVDNRIVINNHLKRTRGGKISFTHLIGYAVVRALAEHPEMNRHYTADEQGKPAVV
                     VPEHVNLGLAIDLKTGKGRSLVVASIKGCEVMSFAQFWQAYEDIIRRAREGKLTAADL
                     AATTISLTNPGTIGTNHSMPRLMSGQGAIIGVGAMEYPAAFQGASDRALAEMAISKII
                     TLTSTYDHRIIQGAESGEFLRRIHDLVLGQDSFYDDLFASLRIPYEPVRWVQDIPEGA
                     VDKTARVLELIDAFRTRGHLMADTDPLNYRQRKHPDLDVLSHGLTLWDLDRQFAVGGF
                     AGQSHMLLRDVLGVLRDAYCRNIGVEYMHISAPDERRWLQERVERVHAKPSRAEQKYI
                     LSKLNAAESFETFLQTKYVGQKRFSLEGAETVIPLLDAVLDKAAEYELDEVVLGMPHR
                     GRLNVLANLVGKPYSQIFREFEGNLDPGQAHGSGDVKYHLGAEGKYYRMFGEGETRVS
                     LISNPSHLEAVDPVLEGIARAKQDILDKGPEGFTVLPVALHGDAAFAGQGVVAETLNL
                     SQLRGYRTGGTVHVIVNNQVGFTTAPQYARSSEYPTDVAKTIGAPVFHVNGDDPESCV
                     WVAKLAVDYRQAFGKDVVIDMICYRRRGHNEGDDPSMTQPKMYDIIDSKRSVRKGYTE
                     ALIGRGDISVEEAERALKDYAQQLEHVFNEVRELEKRAAAPSESVEAEQLVPTGLDTG
                     VPISVIERIADAHVNVPEGFTPHPRVKP"
BASE COUNT          753 a         1430 c         1397 g          712 t
ORIGIN      
        1 tgctgcggat ccgcagcttc gcccacttgc agcggctcgg gctggactat ttcgagcgcg
       61 agatggcggg ccggatcatg acccggatga ccaccgacgt ggacgcgctg tccacgttcc
      121 tgcagaccgg gctgtccacc gcactgatca gcgtcctcac cgtggtcggg gtcgctatcg
      181 cgctgctggt caccgacacc ggcctcgccg tggtggcaat gctgggcctg ccggtgctga
      241 tcgtggccac tgtggtgttc cagcggctgt cgtccgtggc ctacgcagag gcccgggaac
      301 gcgtcagcga agtcaacgca gatctgcagg agaacgtgtc cggcgcacgg gttgcgcagg
      361 cgttcacccg ggagcgacgt tcagcgcggg agttctccgc gcgcagcgac gcctaccggc
      421 gcgcccggct gcgcgcccag cgctacatcg ccacctactt tcccttcgtg gccctgctgt
      481 ccgacctagc caccgccacc gtgctgggcg tcggggctta ccgcgtggcc acgggaaccg
      541 tcaccgccgg ggtgctcacc gcttttcttc tgtacctggg tttgtttttc gcgcccgtgc
      601 agcagttatc ccaggtattc gacggctatc agcaggccgc agtcgggctg cggcgcatcc
      661 gggaactgct ggacacaccg acctcggtgc cgcctcccgg cgccgatgcc gtgcccgtgc
      721 cggcccggct gcgcggggag gtggagctgc gcgaggtcac cttcagctat cccggatcgg
      781 cactacccgc gctggccgag gtgtccctgc ggatcgcgcc gggtgagacc gtcgccctgg
      841 tgggggccac cggagcgggt aagtcgaccg tggtcaagct gctggcgagg ttctacgatc
      901 cgacagccgg aaccgtgctg atcgacggta cggacctgcg acattttgat ccggcggcgt
      961 ttcatcaccg gctgggcgtc gtcccgcaag agccgcacct gttccggggc gacgtcgcgg
     1021 acaacatcgg ctatggggca ccggagacat ctcccgccca gattgaggcc gccgcccggc
     1081 ggattggcgc gctggaggcc attgccgcgc tcccgaatgg atttcgccag ccggtcggtg
     1141 agcgtgggca gggtctctcg gccgggcagc ggcaattgat cgcactggct cgcgccgaac
     1201 tggttgagcc cgacctgctg ttgctcgatg aggccactgc ggccctggac ccagccaccg
     1261 agtcggtggt cctggccgca gccgaccggc tcgccgcccg ccgcaccacc gttgtcatcg
     1321 cgcaccggct gatcaccgcg gccaaagccg accggatcgt ggtgctcgac ggcggccgga
     1381 tcgtggaaca gggccgccat ctcgagctgc tcacggccga cgggctttac gccaggctgt
     1441 gggccgcggg ctcaccggac gggactgttg cggcctgatc gcgtcgcaac agtcccgtct
     1501 cccgcggcag gccatatccg ggtacgcaag ttgtgatctg cgacaccagt ggcctgctcg
     1561 ctgctttcga cactaccggc accggctctt tcccgcgtca acgccctcga tcaccgacgc
     1621 gccgggtctc cggacgcgcc gtgcgccacg gcggggggct agcctggaag cggcgccaga
     1681 gaccctgagc agacccgcgc agcacagacc cgcgcagaat ggatagaggc gacatccagc
     1741 agtgtcccgc agtagcccta ccccccacga ccaacccgta cagttcggcc cgaacgagtg
     1801 gctcgtcgag gagatgtacg accagttcct ggccaacccc tcggcagtgg actcctcgtg
     1861 gcatgacttc ttcgccgatt accagccggc ggtacccggc gacaacggtg tcgttccgcg
     1921 caccgacgcg ccggctccct cggtgtcgcc gctagccagt agtgctaggg ccacgacgca
     1981 gaccaccttg cccgccacaa cgccggtcga gctcccccac gacaccacca ctccgctacg
     2041 cggtgcagcg gctcgggtgg tggccaacat ggagacttcg ctggagctgc caacggccac
     2101 cagcgtgcgt gcggtgccgg caaagctgct ggtcgacaac cgcatcgtga tcaataatca
     2161 tctcaagcgg acccgtggcg gcaagatcag ttttactcat ctcatcgggt acgcagtggt
     2221 gcgagcgctc gctgaacatc ctgagatgaa ccggcactac acggccgatg agcagggcaa
     2281 accagctgtc gtggtaccgg agcatgtcaa cctggggctg gcgatcgacc tcaagaccgg
     2341 caagggccgt agcctcgtcg tagcctcgat caagggttgc gaggtgatga gcttcgctca
     2401 gttctggcaa gcctatgaag acatcatccg cagggctcgg gagggcaaac tcaccgctgc
     2461 ggacctcgcc gcgaccacga tctcattgac caacccgggg accatcggga ccaatcattc
     2521 gatgccccgg ctgatgtccg ggcagggcgc gatcatcggt gtgggagcga tggagtaccc
     2581 ggcagccttc cagggggcca gcgacagagc gctcgccgag atggcgatca gcaagatcat
     2641 cacactgacg tccacctacg accaccgtat catccagggt gccgaatccg gcgagtttct
     2701 ccggcggatc cacgacttgg tgctgggcca ggacagcttc tatgacgacc tgttcgcctc
     2761 gctgcgcatc ccgtacgagc cggtgcgctg ggtgcaggac atccccgagg gcgcggtcga
     2821 caagaccgcc cgggtgctgg agctgatcga tgccttccgc acccgcgggc acctcatggc
     2881 cgacaccgac ccgcttaact accggcagcg caaacacccg gacctcgacg tgctcagcca
     2941 cggcctcacg ctgtgggatc tggaccggca gttcgccgtc ggcggcttcg cggggcagtc
     3001 acacatgctg ttgcgcgacg tgctgggcgt gctgcgggac gcctactgcc gcaacatcgg
     3061 cgtggagtac atgcacatct cagcacccga cgaacgacgc tggctgcagg aacgcgtcga
     3121 gcgggtgcat gccaaaccca gccgcgccga gcagaagtac atcttgtcca agctcaacgc
     3181 cgctgagtcc ttcgagacct tcctccagac caaatacgtt gggcagaagc ggttctcgct
     3241 ggagggcgcc gagacggtga tcccgttgct ggatgccgtg ctggacaagg ccgctgagta
     3301 cgagctggac gaggtggtgc tcgggatgcc gcaccgcggc cggctcaacg tcctggccaa
     3361 cctggtgggc aagccctact cgcagatctt ccgcgaattc gagggcaacc tggaccctgg
     3421 ccaggcacac ggctccggtg acgtcaagta ccacctaggc gccgagggca agtactaccg
     3481 gatgttcggc gagggcgaga ccagagtgtc actgatttcg aatccgtcgc acctggaggc
     3541 cgtggaccca gtgctcgaag gcatcgccag ggccaagcaa gacatcctgg acaaggggcc
     3601 cgagggcttc accgtgttac ctgtcgcgct gcacggtgac gccgccttcg caggtcaggg
     3661 cgtagtggca gagacgctca acctctcgca gctgcgcggg taccgcaccg gtgggaccgt
     3721 ccacgtgatc gtgaacaatc aagtcgggtt caccacggca ccgcaatatg cgcgatccag
     3781 cgagtacccc accgatgtgg cgaagacgat cggcgcaccg gtgttccacg tgaacggtga
     3841 cgatcccgaa tcctgcgtct gggtggcgaa attggcggtg gactatcgcc aagccttcgg
     3901 caaggacgtt gtaatcgata tgatttgtta ccgtcgtcgc ggccacaacg agggtgacga
     3961 cccgtcgatg acgcaaccga agatgtacga catcattgac agtaaaaggt cggtccgtaa
     4021 aggttacacc gaggcactca tcggtcgcgg agatatttct gtggaggaag cagagcgcgc
     4081 gctgaaggat tatgcgcagc agcttgagca cgtcttcaat gaggtacggg agctggaaaa
     4141 gcgggctgcg gcgccgagcg agtcggtgga ggccgagcag ctcgtgccca ccgggctgga
     4201 caccggtgtc cctatcagcg tcatcgagcg gatcgcggac gcgcacgtca acgtacccga
     4261 aggtttcacg ccgcatccca gagtcaagcc cg
//
LOCUS       DASVXZ010000175         1926 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_198895, whole genome shotgun sequence.
ACCESSION   DASVXZ010000175 DASVXZ010000000
VERSION     DASVXZ010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198895"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(416..1324)
                     /locus_tag="VF788_03495"
     CDS             complement(416..1324)
                     /locus_tag="VF788_03495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933257.1"
                     /translation="MGVTLKNRSWFSYSRRFFAVFTVLSFVAVATGCLAVALDGASTV
                     VWSLNLAAWGVGVVVALAVSRFASSIFARIMLVAAPVGLLASLANPGRMGVHRWLDLG
                     PVNANAAALLLPAFVVAMASVVRDARWIWLAYAVCTVVLILQPDASQATAFAAAILII
                     VVRLPVARVARIGAAVLVSSGAVVAWLRPDPLTPVAEVEGVVGLAYEHSPPIAVVAVT
                     ALGCATLAPMMIAARFELPVVRTAALALTAYLVLSASAPLFGAFPVPLVGIGMSPVIG
                     FWLGVGLLAASISWEDAAADGSSVGG"
     gene            1430..>1926
                     /locus_tag="VF788_03500"
     CDS             1430..>1926
                     /locus_tag="VF788_03500"
                     /inference="COORDINATES: protein motif:HMM:NF017416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8933258.1"
                     /translation="MMGQKDRRFDPLPSDVSLENLVPKDNFYRRLEATLDLSFVRELV
                     APLYAGGGRPSVDPVVFFKLQLVMFFEDLRSERQLMRVVVDRLSLRWYLGYDLHEPLP
                     DHSSLTRIRERYGLGTFRGFFDRIVEMCVEAGLVWGEELFVDSTTVRANAAKAAQVPR
                     FAARE"
BASE COUNT          411 a          613 c          589 g          313 t
ORIGIN      
        1 ccttgtagat cggtcccgat tcgtacaaga accgcagaac accacccttc cggctgccgt
       61 ccagtctcac taggaccgtc ggcgttctag cctgcgcaac aatatgctca ggtgctcacc
      121 cgagtgcgcc ctgtgcagag gccgctcttt ttcggttagc agttccgacg tcctctgatg
      181 caccttggcg catatctatt cgcacccact agatgttgtg gttggctctc tgcgccggac
      241 cgtaccaaag gggcgcagcc tgttgaaaaa cgcggcttta ggcaatgtga cgatgccgga
      301 ttggaagtca atgagatctc tcaggtggct gcagggccgc agcctgagcc agcatcctcg
      361 gccccaagtg tccgaaggtc ccacgtcagt taaggtcctg gacgcgtagt cttgctcatc
      421 cgccaacaga agagccatca gcggcagcat cttcccaaga gatactagcc gccagcagac
      481 caacgcccag ccagaacccg attaccgggc tcatgccgat gccgacgagc gggaccggga
      541 aagccccgaa cagcggcgcg gaggctgaca gaacgaggta ggcggtgagc gctagtgcgg
      601 cggttcgcac aaccggcagt tcgaaccgtg cagcaatcat cataggagcc agggttgcgc
      661 aaccgagcgc ggtaacggcc acgacggcga tcgggggaga gtgctcgtaa gcgaggccaa
      721 caacgccttc gacttctgcg acgggcgtga gcggatcggg gcgcagccat gccaccacgg
      781 cgccggacga gaccaggacc gcggcgccga tgcgggcgac gcgcgccacc ggcaggcgca
      841 ccacgatgat gaggatcgct gcggcgaatg cggttgcctg cgatgcgtcc ggctgtaaga
      901 tcagcaccac cgtacacacg gcgtacgcaa gccatatcca gcgcgcatcg cgtactacac
      961 tggccattgc cacaacgaag gccggcaaga gcagcgcggc agcgttcgca ttgacggggc
     1021 cgagatccag ccagcggtga acacccatcc ggccaggatt ggcaaggctg gccagcaatc
     1081 cgacaggtgc cgcgacgagc atgatgcgcg caaagataga cgaagcgaaa cgggaaacgg
     1141 ccagcgccac gactacgcct acaccccatg cagcgaggtt gagtgaccat accacggtag
     1201 aagcaccatc gagcgcgacg gcaaggcaac ccgtggcgac tgccacaaac gacagaacgg
     1261 tgaaaaccgc gaaaaagcgt ctggagtagc taaaccacga tctatttttc aacgtcacgc
     1321 ccatgcactc atgcccatgc ccgtcattgt ggcaggtcgt cgaaagtacc gcaggagtgc
     1381 gcgtagagta acatgatcgg caccaattcc cgcgacaggt agggcaacca tgatgggaca
     1441 aaaggaccgc cgtttcgacc cgcttcccag cgacgtttcc ctggagaatc tggtcccgaa
     1501 ggacaacttc taccggcgcc tggaggctac actcgacctc tcgttcgtca gggagctcgt
     1561 cgccccgctc tacgcgggtg gcggcaggcc atctgtcgat ccagtggtct tctttaagct
     1621 gcaactggtg atgttcttcg aggacctccg ttcggaacgt cagctcatgc gggtcgtcgt
     1681 cgaccgcctc tccttgaggt ggtacctggg ctacgacctc cacgagccgc tgcccgacca
     1741 ctcctccctc acgcgcatcc gcgagcgcta cggactcggg accttcaggg gcttcttcga
     1801 ccggatcgtg gagatgtgcg tagaggccgg cctcgtgtgg ggcgaggagc tgttcgtgga
     1861 ctccaccacg gtcagggcca acgccgccaa ggcggcccag gtcccgaggt tcgccgcaag
     1921 ggagca
//
LOCUS       DASVXZ010000176         2943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1623218, whole genome shotgun sequence.
ACCESSION   DASVXZ010000176 DASVXZ010000000
VERSION     DASVXZ010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1623218"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /gene="thrS"
                     /locus_tag="VF788_03505"
     CDS             complement(<1..214)
                     /gene="thrS"
                     /locus_tag="VF788_03505"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the formation of threonyl-tRNA(Thr) from
                     threonine and tRNA(Thr); catalyzes a two-step reaction,
                     first charging a threonine molecule by linking its
                     carboxyl group to the alpha-phosphate of ATP, followed by
                     transfer of the aminoacyl-adenylate to its tRNA; Derived
                     by automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX8933259.1"
                     /translation="MVAPSPPIQPALRVMVPAGTTAGAALRAAGAPPSGPDALVVARD
                     LHGELRDLSWAPESDTEVEAVAASSPD"
     gene            839..1153
                     /locus_tag="VF788_03510"
     CDS             839..1153
                     /locus_tag="VF788_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933260.1"
                     /translation="MNHRTRLRDALGTDQIRRGGRGLSGRVDPVSLSSATGSTRASRD
                     GAQQRGIVARECALTNVRRADQHRTAGQQGPRRKATGSADKERPATAQLAARQTAGHL
                     TD"
     gene            1600..2877
                     /locus_tag="VF788_03515"
     CDS             1600..2877
                     /locus_tag="VF788_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019048165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03118 family protein"
                     /protein_id="HEX8933261.1"
                     /translation="MAACSGAGTTSGPVPSPDNHYRQVNLAANSEAYRALFTMPDMVN
                     AWGVAIRPKGAGGHFWVGAGNASYEFVGDVTASSDQKLRVLHQDPLKAVMIPGTDTST
                     EPTSIGKVTGVIFNGADINSDKFVVTNQPAQVDGRTVMVGGSARFIFATDSGRITAWG
                     ERGPDGKVVRVDGPSQEVFNGDSQGMKFFGVALKQGSFDTLWAADFGADPQIRQFDKD
                     WKLVPTKGFVNPFATGDPVDPANAAKGKKAKPGDPVPWNITTLGDRVLVSYVISKAPD
                     KPQPGGPAFDAGEEDSLNKEQEKTTGGHPDKGKLAEFTSDGALVRVFADDARLNAPWG
                     VALAPAGFGPMGGKLLVGNFGGSGRVAAFDDASGKFVDYMRDEEGSPIAIDGIWNILF
                     GNGESLGDANALYFAAGPAEEKEALFGALRVAR"
BASE COUNT          517 a          941 c          971 g          514 t
ORIGIN      
        1 cgtcggggct gctcgcagcg acagcctcaa cctcggtgtc gctttcgggc gcccagctca
       61 gatcacgcag ctcgccgtgt aaatcccggg ccacgacgag ggcgtctggt ccgctggggg
      121 gcgcccccgc tgcacggagc gccgccccgg cagtcgtccc ggccggcacc atcacgcgca
      181 gggcaggctg gatagggggg gacggcgcga ccacgagagc tccttggcga tacagcgacg
      241 gcgattcggt tgtcgatgct atcgagggat gagacccgcc gtgtgattac cccgcagtaa
      301 gcactggtga tcatgctgac acagcactgt gatcaacggc taccgctcgg gagcgcgcgt
      361 gcagtcagcc tattggtaac aacggagtga gcatcgacat cgccggttga gcggccggtt
      421 gaacgactga tcgaacaacg ggacggacag ccggcgttat ggagttgtcg acgggcgcca
      481 ctacctgctt gaccgtgtca acagctccga ttccgcttgt gctcgcgcgt tcttggcgag
      541 ggctggtcac ctgttcgttc cgtgagctgt cgggttgctt gtcgcccggg tctttcgccg
      601 cgttcgtgct cggatcggcc ggcgccaata cgcctcccac cggagctacc cggccgactc
      661 ccttggtggc gggatccagc accgggctca ccggagtgat cggctccggc ggagcatgac
      721 cagctgcttt cggaggtgac ttccaaggtc gttgcgcggt acctgagtcc cggctgggtc
      781 catcaactgg cacgtccagg gacaccggtg cgttccggcg gactcgcccg agcctgggat
      841 gaatcatcgg actcggctcc gtgacgccct gggcactgac cagatccggc gcggcggacg
      901 ggggctcagc gggagggtcg acccggtatc cctcagtagt gctaccggca gcacccgggc
      961 cagccgggac ggggctcagc agcggggcat tgtcgcccgc gagtgtgccc tcaccaacgt
     1021 gcgtcgcgcc gaccaacacc gaaccgcagg ccagcagggt ccccgccgca aggccacagg
     1081 ctcggccgac aaggagcgcc cggctaccgc tcaactggct gctcggcaga ctgccggtca
     1141 tctgactgat tgagaggcag ctgaccacgg agcccggtgc gatctcggct gcgccgatgc
     1201 ccgttcgggc accaccgacc caggcgatga gggcagtggc agagggccca gagcccgact
     1261 tcctacgacg acgagcggtc atcgtgcgtc accaggcatc tcctcacggt agtggaaccc
     1321 gggaagaata caggttcttg ggcgtaaacc cagacccatc actcctccgg cccagcaggc
     1381 tctgaggtgc ctcacccctg cgactgtgct tgggggacca cgagcagata ccgcggcgag
     1441 tggccgcctg attacattcg accatcttga tttacgcttg caacgaagcc tacccttacc
     1501 acactttagg cgcgctttag ctgattggag ccctgtatgg ccctccgtgg atgtgtccgg
     1561 ccggtccgtc gaggcgttgc ctgcctcgcc gtggtcggtg tggccgcgtg tagcggcgcc
     1621 ggcaccacct ccggcccggt accctcgccg gacaaccact accgccaggt gaatctggcg
     1681 gctaactccg aggcctaccg ggcgctgttc accatgccgg acatggtcaa tgcgtggggc
     1741 gtggcgatcc gccccaaggg cgccggtgga catttctggg tcggcgccgg caatgcgtcc
     1801 tatgagttcg tcggcgatgt gactgcttcc agcgatcaaa agctccgcgt actgcatcaa
     1861 gatcccctca aagcggtgat gatcccggga acggacacca gcaccgagcc gacatcgatc
     1921 ggcaaggtca ccggggtgat cttcaacggt gccgacatca actcggacaa gttcgtcgtg
     1981 accaaccagc cggcccaggt cgacggccgc acggtgatgg tgggcggctc ggcacggttc
     2041 atcttcgcca ccgactccgg gcgtatcacc gcctggggtg agcgtggtcc ggatggcaag
     2101 gtggtccggg tcgatggccc cagccaggag gtattcaacg gggattcgca aggcatgaag
     2161 ttcttcgggg tggccctcaa gcagggcagc ttcgacacgt tgtgggccgc cgacttcggt
     2221 gctgacccgc agatccgcca gttcgacaaa gactggaagc tggtacctac caagggtttc
     2281 gtgaatccct tcgctaccgg tgacccagtc gacccggcta acgcagccaa aggtaaaaag
     2341 gccaaaccgg gtgatcccgt accgtggaac atcaccacgc tcggtgaccg cgtcctggtg
     2401 agctatgtga tctccaaggc tccggacaag cctcaacccg ggggtccggc gttcgacgcc
     2461 ggcgaggagg actcgctgaa caaggaacag gaaaagacca ccgggggtca ccccgacaag
     2521 ggcaagctcg ccgagttcac cagtgacggt gcgttggtcc gagtattcgc cgatgacgcc
     2581 aggctgaacg caccgtgggg agtcgcgttg gctcccgcgg gcttcggccc gatgggtggc
     2641 aagctcctgg tggggaactt cggcggatcc ggacgggttg ccgcattcga cgacgcgagc
     2701 ggtaagttcg tcgactacat gcgcgacgaa gaaggatcac caatcgctat cgatggtatc
     2761 tggaatattc tttttggtaa tggggaaagc ctcggcgacg ccaacgcgct gtatttcgca
     2821 gcggggccgg ctgaggagaa ggaggcgctc tttggcgcat tgagagtggc ccgctgatgt
     2881 agcggccggc cgcgctttcc cgtgtcctgc ggtttgaatt ccctgctcga agccctagct
     2941 ccc
//
LOCUS       DASVXZ010000177         5418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_19348, whole genome shotgun sequence.
ACCESSION   DASVXZ010000177 DASVXZ010000000
VERSION     DASVXZ010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5418
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19348"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VF788_03520"
     CDS             complement(<1..783)
                     /locus_tag="VF788_03520"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HEX8933262.1"
                     /translation="MGLVARVFVSHASQDRAWAGQLHQWLVAEDHEVFLDTDPHDGIV
                     VGEEWDQRLHERLRWADAVICVVTSAAVASTWCTAEISIALSRGSRLLPVRAERGANH
                     PLLKSAQYADLTVDSAAGHAALVEALRRVDVAGGSGWPDDRSPFPGLRPFAVEDHRVF
                     FGRSAEVEQLAGLLRSPAERAEGSVLLVVGPSGCGKSSLVRAGLLHVMASEPAWWTLS
                     PMLPGADPVAVLARELAVAARRSNLGWTVDHVHHRLAEQGLAG"
     gene            complement(1287..1631)
                     /locus_tag="VF788_03525"
     CDS             complement(1287..1631)
                     /locus_tag="VF788_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933263.1"
                     /translation="MARLIVEGSDLIVWMNPLEILGALRGPVRVPLASIMDLAASISL
                     WSELRGLRMPGTGLPGVIALGTWRYRDGKDFAAVYASLGVIVTLTGAPWSRLLVSSRD
                     PAGVRREINTHR"
     gene            1758..2291
                     /locus_tag="VF788_03530"
     CDS             1758..2291
                     /locus_tag="VF788_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEX8933264.1"
                     /translation="MTEFDAAQLPPPARRVVEICVGEERPTLEAFLDYYRDAVTRKVS
                     GVSEADARRQLVSSATTLGGIIKHLRRVEINWFERVLAQTPDRDLPPIPWDDPDAGFR
                     LGPGENLDLVLADYERQCERSRQLASRFSLADAVAHHELGKVSLRWIYIHMIEETARH
                     AGHADILREQLDGTLGP"
     gene            complement(2416..3201)
                     /locus_tag="VF788_03535"
     CDS             complement(2416..3201)
                     /locus_tag="VF788_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX8933265.1"
                     /translation="MVPVSDDAWAFLADQFVDGAYESVKGQIRTYVLHHQLMEHLPEP
                     PGAVLDVGGGAGHQSFPLARAGYEVTLLDPSPTMLARAEQKLAAEAPAVRDRVRLVQA
                     RGEDAAEATGGQRFTAVLCHGVLMYVDHPDPLITSLCRCAAADGIVSVMALNAKTLAI
                     RPALERRWADALGAFEASAERGALGVDTRADTVEELAELFRANEVEPVTWYGVWLFAD
                     WMDLAATEEVSAVAAVELQASHRDPYRQLSRVFHLMGHNRANA"
     gene            3519..4205
                     /locus_tag="VF788_03540"
     CDS             3519..4205
                     /locus_tag="VF788_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HEX8933266.1"
                     /translation="MTTHALPSVVDADTWQRHLDELRVREKVATRELDAIAAQRRRMP
                     VVKMPDYTLEGEPGPVRLADVFGGRSQLIVYHHMWFAGEQWQCPGCTWFTSQFTRLEF
                     LDNYDARFVIVTQGPIDEALAYRRRVGNTMSWYSTANSSFGTDVDAPPSGGFAVNVFL
                     RDGDTVYRTWHTNGRGTEQLSHSFALIDLLPYGRQEEWQDSPEGWPQSPTYSGWASSE
                     AVAALYGPDA"
     gene            4770..4964
                     /locus_tag="VF788_03545"
     CDS             4770..4964
                     /locus_tag="VF788_03545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933267.1"
                     /translation="MTRHKVLYVKAVDDRMDLRPPQRGRTHIPQGTWVATSRRERVVM
                     ASGRRAPFGPVRSRAQMPLM"
     gene            5022..>5418
                     /locus_tag="VF788_03550"
     CDS             5022..>5418
                     /locus_tag="VF788_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX8933268.1"
                     /translation="MRPPGVYRVGSDTSFLIDVMQEGGYAAGRRVLDLGTGTGAVALA
                     AARCGAASVTAVDLSLRSVAAAWFNSRLHRVSCRVCWGDPGGPLAGECFDLILANPPY
                     VPAASDVLPRHRMSRCWDAGLDGRMLLDRI"
BASE COUNT          974 a         1756 c         1755 g          933 t
ORIGIN      
        1 tcctgccaaa ccctgctcgg ctagccggtg atgaacatga tccaccgtcc aacctaaatt
       61 gctccgccgt gcggcaacgg ccaactccct agccaagacc gcgaccggat cggcaccagg
      121 cagcatcggt gacaacgtcc accacgctgg ctcactggcc ataacatgca acagccccgc
      181 ccgtaccaac gatgatttgc cgcacccaga agggcccacc accagcagca ccgacccctc
      241 ggcgcgctcc gctggtgacc gcaacaaccc ggcaagctgc tccacctcag cactgcgacc
      301 aaaaaacacc cgatgatctt caaccgcgaa cgggcgcagc ccgggaaaag gcgaccggtc
      361 atccggccaa cctgatcctc ctgcaacatc aacccgacgc aacgcctcca ccagcgctgc
      421 atgccccgca gcggaatcga ccgtgaggtc ggcatactgc gcggacttca gcagcgggtg
      481 atttgccccc cgctccgccc gcaccggcaa cagccgactg ccccgtgaca gagcaatgct
      541 gatttcggcc gtacaccacg tagaggccac cgcagcggag gtaaccacgc agatcaccgc
      601 gtccgcccac cgcagccgct catgcagccg ctggtcccac tcctcaccga ccacgatgcc
      661 atcgtgcgga tcggtatcca ggaacacttc gtgatcttca gccacgagcc actggtgtag
      721 ttgaccagcc cacgcacggt cttgactggc atgactaaca aatactctgg ccaccagccc
      781 caccccgggc tgagtgtaag actcggtgtg cagccagaaa caccgatttt agcggcacaa
      841 tacgcagcca ccccaacccc caacacaaag accattgtga tcaggtgagg agatcagccc
      901 ctccggccag atcgtcatgg ccgccacaat gagccgtgtc tcgccatgcg aagacatcgc
      961 atacggcacc aagcgaaacc gtcccggatc gcaaaccacg ccaacagatg gcgagccttg
     1021 catctaactc ggtatcccca cctcccccgg ccgcgactaa gcctgcgtaa ttacgcagtg
     1081 acttgcagcc gcccacggca tgctgatcta acccgcttcc aatcatcaag ccccaccagg
     1141 atgcccctca gcagcagcct gccggtatct ccgatgccga tctgctgctc ccagtagagg
     1201 atcgttcaac gaccgcgcgt ggatcataat ccatgggtgg tttcgctggg cagaagacga
     1261 ggcgcatccg agtgccacga cagccgctaa cggtgtgtgt tgatctctcg acgcacacct
     1321 gcgggatcgc gactcgacac gagaagccgg ctccatggcg cgccggtgag ggtgacgatc
     1381 accccgaggc tggcgtacac cgcagcgaag tccttgccat ccctgtagcg ccaggtcccc
     1441 aaggcaatca cgccgggaag cccggtgccc ggcatccgca gcccgcgcaa ctcgctccag
     1501 agcgagatgc tggcggccag atccatgatg ctggccagcg gcaccctcac aggtccccgc
     1561 agcgccccga gaatctccag cgggttcatc cagacgatga ggtcgctgcc ctcaacgatc
     1621 aatcgggcca tgattcctat cagggcattg acacgatggg atcggctagt ggcacaaggt
     1681 gatcatttca ggcgccgtgc gcaccatcta cgatcggccg gccgggcgtt cggtgtgggt
     1741 agttactgtc gacaggcgtg accgagtttg atgctgcgca attgccaccg cccgcgcgcc
     1801 gggtcgttga gatctgcgtc ggagaggaga ggccgaccct ggaggcattt ctcgactact
     1861 accgagacgc ggtgacgcgc aaggtgagcg gcgtctctga ggccgacgcc cgccggcagt
     1921 tggtgtcctc ggcgaccacg ctgggtggga tcatcaagca tctgcgccgg gtcgagatca
     1981 actggttcga acgtgtcctg gcgcagaccc cggaccggga tctgccgccg ataccgtggg
     2041 acgatccgga tgccggtttt cggttgggac caggcgagaa cctcgacctg gtacttgccg
     2101 actacgagcg gcaatgtgag cggtcccggc agctcgcgtc gcggttttca ctggccgatg
     2161 cggtggccca ccatgagctc ggcaaggttt cgttacggtg gatatacatc cacatgatcg
     2221 aagaaaccgc ccggcacgcc gggcacgccg acatcttgcg ggaacagctc gacggcacgc
     2281 tcggcccgtg agcacgtaac tcttaccctc cgctgactga tccccaccgg acagaccgag
     2341 cacttgagcg agggccgttc cccaccgggc gcctcaatgg cgtgccgtag ccggggttcg
     2401 gttctttgca ggaggtcaag cgttggctcg attgtggccc atcaggtgga agacccggct
     2461 gagctggcga taggggtccc ggtggctggc ttgcagttcg acagccgcca cggccgagac
     2521 ctcctcggtc gccgcgaggt ccatccagtc ggcgaaaagc cagacgccgt accaggtcac
     2581 cggttccacc tcgttagctc ggaacagctc cgctagttcc tcgacggtgt ccgcccgggt
     2641 atcgacaccg agggccccgc gttcagcgct ggcttcgaag gcccccagcg cgtcagccca
     2701 gcggcgttcc agggcggggc gtattgccag ggtcttggcg ttgagggcca tcaccgacac
     2761 gattccatcg gcggccgcgc acctgcacaa ggaggtgatc agcggatcgg ggtggtcgac
     2821 gtacatgaga acgccgtggc agagcaccgc cgtgaagcgc tggccgccgg tcgcctcggc
     2881 ggcgtcctca ccacgggcct gcaccagccg gacgcggtcg cgcaccgctg gggcctctgc
     2941 ggccagcttc tgctcagccc tggccagcat cgtcggggag ggatcgagga gggtcacctc
     3001 gtagccggcc cgggccagag ggaaggactg atggccggcc cctccaccca cgtccaagac
     3061 ggcccccggt ggctcgggga ggtgctccat cagctggtgg tggagcacgt aggtgcggat
     3121 ctgccccttc acggactcat acgcaccgtc tacgaactgg tcggcaagga aagcccaggc
     3181 gtcatcgctc acgggaacca tcctggcaac cgggcccgaa agctcaggcg gggacgagca
     3241 ttgaaaagga cctcggctcg tttgaggagt tcggggacgt tgacttcgac gaggtaacac
     3301 cacggtcgct tgccgtgctt cagatgtgca tcgatgcata cgtcgccggg ctgcccccat
     3361 cggagtggcg ctcccatcag agtaccggcg tagtggcgaa ccgccatccg cttgcgtaca
     3421 cgcatgggag cgcgatgagt ttcgacgctg acgagagtcg acactgacag cgatcaacct
     3481 ggtgtagcgc agcaccggct tgcagcgagg aggaagttat gactacccac gcactaccgt
     3541 ctgttgtcga cgccgacact tggcagcgcc accttgacga gctgcgggtt cgggagaagg
     3601 tcgcgacccg ggagctcgat gcaatcgcag cgcagcgtcg ccgcatgccg gtggtcaaga
     3661 tgcccgacta cacgctcgag ggcgagccgg ggccggttcg tttggccgat gtcttcggcg
     3721 ggcggtcaca gctgatcgtc taccaccaca tgtggttcgc tggcgagcag tggcagtgtc
     3781 cgggctgcac ctggttcacc tcgcagttca ccaggttgga attcctggac aactacgacg
     3841 cccggttcgt catcgtcact cagggaccga tcgacgaggc actcgcgtac aggcggcggg
     3901 tcgggaacac gatgagctgg tattccacgg cgaacagttc gttcgggacc gacgtcgacg
     3961 cgccgcccag cggcggcttc gctgtcaacg tgtttctgcg cgatggcgac accgtgtatc
     4021 gcacctggca caccaacggc cgtggcaccg agcagctcag tcacagcttc gcgctgatcg
     4081 atctgttgcc gtatgggcga caggaggagt ggcaggactc gccggaaggc tggccgcaat
     4141 cgccgaccta cagtgggtgg gccagctcgg aagccgtcgc cgcactctat ggcccggatg
     4201 cgtgagtgcg ccaggtgccg tatagagcct tgagacggct cggcctgtgt cttgacggtc
     4261 ggtcggctca ccggtgtttg tggctatccg ggacgccgtt atctgctgcg cgctctcgtg
     4321 cggtcgtgat ttacgcgtcg ggcggtctcg acgaggactt tgagatctga agtatgtcat
     4381 atgaggggag acggcgatcc atagcgaccg ggtgcggttg tgccccatcg gccgtcgaat
     4441 gggccgttga gcatggcagg cggccacacg gtgggctatg cagagtgcga gttgaagcag
     4501 tcgatcgcca cttcggggcg ctctccgaag tagttgtagc ttcttaggga tgttgtgggc
     4561 tggctgttgc tgtcggcctg ccgaggttca ccggtgatat gtgaggtcgg aggccggatc
     4621 ctgggcgggt gggttctggc tagcaggcgc tcgtcacagc tgccggctgc cctgcgctgc
     4681 ccactcaacg cgtcgcagcc gtagcggacg ggactgacag gcgtccgcca gcatccgcgc
     4741 gcacagcggc atgtgcggat gttgctcggg tgacgcgaca taaggtgctg tacgtcaagg
     4801 ccgtcgatga caggatggat ctcaggccgc cgcaacgcgg ccgaacccat atcccacaag
     4861 gcacgtgggt cgccaccagc cggcgggagc gggtggtgat ggctagcggc cgccgcgcgc
     4921 ccttcgggcc ggtgcgcagc cgcgcccaga tgccgctgat gtagacgggc ggacggggtt
     4981 tacggacttg aagcgcgggt agagacagga ccgtgtgtct gatgcggccg ccgggggtgt
     5041 atcgggtcgg tagcgatacc tccttcttga ttgatgtcat gcaggaaggc ggttacgcgg
     5101 cggggcgccg tgtattggat ctggggaccg gcactggcgc ggtggcgctg gcggccgctc
     5161 gatgcggtgc agcctcggtc accgcggtgg atctgtcgct gcgttcggtg gcggccgcgt
     5221 ggttcaacag tcggctgcac cgggtttcct gccgggtgtg ctggggtgat ccgggtgggc
     5281 ccctggcggg cgagtgcttt gacttgatct tggcgaatcc gccttatgtc ccggcggcca
     5341 gcgatgtctt gccccgccat cggatgagcc ggtgctggga tgctggcctg gacgggcgga
     5401 tgctgctgga tcggatct
//
LOCUS       DASVXZ010000178         2125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1444211, whole genome shotgun sequence.
ACCESSION   DASVXZ010000178 DASVXZ010000000
VERSION     DASVXZ010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1444211"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..1365
                     /locus_tag="VF788_03555"
     CDS             97..1365
                     /locus_tag="VF788_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8933269.1"
                     /translation="MLEEDRHTEEIIERVAALDIGKAEVMACVRVPHHDGTGRRLQEV
                     KPYPTMTRSLLRLADRLSELGVTRVVMEATSDYWKPVYFLLEAHGFQTWLVNARDVKH
                     LPGRPTTDKLDAVWLCKVAERQMIRPSFVPPPEIRRLRDMTRYRCDLVEARTAEKQRV
                     EKLLEDAQIKLSVVASDIFGVSGREMMAALIAGQRDPQVLAQLARGRMRVKITQLEEA
                     FTGYFTGHHGFLLTKMLARVDVLSADIAELETRIEEMVAPFGTAPERLDEIPGLGMIG
                     ASVVLAEIGLDMTRFPTAGHLASWAKFAPGVKESAGKKKGTGSTGHGNRYLAKVLGEA
                     AVAAGRTDTFLGERYRRIARRRGKKRAIVALGRTILVIIWHLLSDPNTRFTDLGSDFY
                     DTRLDPERRKRAHIHQLEALGYKVTIEPAA"
     gene            complement(1581..2123)
                     /locus_tag="VF788_03560"
     CDS             complement(1581..2123)
                     /locus_tag="VF788_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8933270.1"
                     /translation="MRSWHVEDASGALEVFGHVEVARWLSPIMGQVPDLPAMQLLLQQ
                     WIVEDARAIPPAGRWCIQRLKDERVIGGGILLPLPPGNEDLEIGWQLHPEVWGHGYAS
                     EVTYALAQWAFSQDRDEIFAVVRPDNTRAAATVRRNGMEWVGETSEYFGLTMQVFRLR
                     PADLSRLAQQADLPPNFEAS"
BASE COUNT          376 a          740 c          663 g          346 t
ORIGIN      
        1 ttcagtgtcg cttcgagcac gcgggtcaga ttccgtcttc ggtgcggccc tccaggcgac
       61 cacccagttg ccggcgtgag gggcgaggag gttgcggtgc ttgaggaaga ccgtcacacc
      121 gaggagatca tcgagcgggt cgccgcgttg gacattggca aagctgaggt gatggcctgc
      181 gtgcgggttc cccaccacga cggcaccggc cgacggctgc aggaagtcaa gccctacccg
      241 acgatgaccc gctccctgct gagactggcc gatcggctca gcgagctggg cgtgacccgc
      301 gtggtgatgg aggcaacctc ggactactgg aagccggtgt atttcctgct ggaagcgcac
      361 gggttccaga cctggctggt gaacgcccgt gacgtcaagc acctaccggg ccggccaacg
      421 accgacaagc tcgacgcggt gtggttgtgc aaggtcgccg aacggcaaat gatccggccc
      481 agcttcgtgc ccccacccga gatccggcgg ctgcgtgaca tgacccgcta ccgctgcgat
      541 ctagtcgagg cgcgtaccgc ggagaagcag cgggtggaga agttgctcga ggacgcccag
      601 atcaagctgt cggtggtagc cagcgacatc ttcggggtgt ccgggcggga gatgatggcc
      661 gcactgatcg ccgggcagcg cgatccccag gtgctggccc agctggcccg cggtcggatg
      721 cgcgtcaaga tcacccagct ggaggaggcg ttcaccgggt acttcaccgg ccaccacggc
      781 ttcctgctca ccaagatgct ggcccgggtt gatgtcctca gcgccgacat cgccgaactg
      841 gagacccgca tcgaggagat ggtcgctccg ttcggcacgg ccccggaacg cctcgatgag
      901 atccccggcc tcggcatgat cggtgccagc gtcgtcctgg ccgagatcgg cctggacatg
      961 acccggttcc ccaccgccgg gcacctggcc tcttgggcga agttcgcgcc cggcgtcaag
     1021 gaatccgctg gcaagaagaa gggcacaggc tcgaccggac acggcaaccg ctacctggcc
     1081 aaagtcctcg gcgaggccgc cgtggcagcc ggcaggaccg acaccttcct cggcgaacgc
     1141 taccggcgca tcgcccgccg ccgcggcaag aagagggcca tcgtcgccct cggccgcacc
     1201 atcctcgtga tcatctggca tctcctgtcc gacccgaaca cccggttcac cgacctcggc
     1261 tcggacttct acgacacgcg cctcgacccc gaacgccgca agcgagccca catccaccaa
     1321 ctcgaagccc tcggctacaa ggtcaccatc gagccagccg cctgacctag cacagtcacc
     1381 atcacccaac ccggctccgc taacgctccg ctaacgctcc gccgggtcca atccctgccc
     1441 gtccccggca ttattttcgg gtcagagtcg tacatgggtg acggatcggc ctcagtagag
     1501 gggtgaccgt gcctagccga ttttgcggct ggaagtgtgg cacttaccat ccttcaccgc
     1561 gtgcgtgccc gatctggcgg tcacgaggcc tcgaagtttg gtggcaaatc tgcttgttgg
     1621 gccaagcggc tgaggtccgc tggccggagt cggaagacct gcatggtcag cccaaaatat
     1681 tcgctggtct ccccgaccca ttccatgccg ttgcgacgca ccgtggctgc ggcacgagtg
     1741 ttatccggcc tgacgaccgc gaagatctcg tccctgtcct ggctgaaggc ccactgcgcg
     1801 agggcgtatg tcacctcgct ggcatagccg tggccccaga cctcgggatg taattgccag
     1861 ccgatctcca ggtcctcgtt accgggcggc aggggcaaca ggatcccccc accgattacg
     1921 cgctcatcct tcaaccgctg gatgcaccac cggcccgcgg gcggaatcgc ccgggcgtcc
     1981 tcgacgatcc actgctgcaa cagcagctgc atagccggca gatcgggaac ctggcccatg
     2041 atcgggctaa gccatcgtgc cacctcgacg tgcccgaaca cctccagtgc cccggacgcg
     2101 tcctcgacgt gccaactccg cagca
//
LOCUS       DASVXZ010000179         3704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_199578, whole genome shotgun sequence.
ACCESSION   DASVXZ010000179 DASVXZ010000000
VERSION     DASVXZ010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3704
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199578"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2754
                     /locus_tag="VF788_03565"
     CDS             <1..2754
                     /locus_tag="VF788_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8933271.1"
                     /translation="SLVQTSLPPEISLPEISLPESPALVCEAGVVVQANMAAVELAGG
                     WFPDSLIGLPLHSLLVGPETDTGTDADLIGSDGRAIPVRVTRWNLPGTNLLVVFLVDV
                     SDLRPPAGSLDTGELAQENARLQQAQRIARIGSFTWDWPTNKITYSPALAELFGGHCA
                     DADPFRHIHPEDLPELFRQVHEMVSDPDAGTAEAEFRGLPERGETHYVCRVQAERSAS
                     GEPLRLVGTVQEVSQERALERVLRAEQHRLTQAQRVARIGTWEWDPGSDRLVWSDVMQ
                     ELYGVHARHTTYETFLSLVHPDDREWVDGMWRQLVLDPRPVSCEHRVLRPDGVVRTFR
                     CHGAAIADATGGSRLVGTVQDVTEQRAAETRMMRSSQRFADLVAITPVGIGIFDDNDR
                     LVDANEALCKLLGYDLETLRGMSSKALTHPDEPSVRLGTHPSGRSESYTVPQRMLLRA
                     DGDPVFCELHVSASVQDDGQRFLLVIFTDITERRRVAEALTYRATHDELTGLPNRAAI
                     KDTLTELLSFGGAGVAVLFCDIDNFKRVNDAMGHDAGDELLVALARLLRDGLPAGCTA
                     GRLSGDVFVVICSDVTAQGGIGSLTATVSGLLRTAIPLRGQTIRVSAAVGVAVPDAST
                     KGAQDLMRFADAAMFEAKRTGTGHFAMANAALIASADRQVELECELREALARDELQLN
                     YQPVVNSAGVILSAEALIRWPHPERGMLSPGVFLPVAEQGGLMRELDRWVLRTALREA
                     RDWVSWDGRPVAVAVNLADPGESDFVATVANAMAGSGLPWEQLVLELVETTLIDLSET
                     TRQAMAELVERGARFAVDDFGTGYSSLARLKDLPAQIVKLDRQFVSGVGADPSDFAVV
                     RAVVDMAHAMGRVCVAEGVETVDQFRVLRSLGVDSYQGWLFSRALPAAEFRALLHHGP
                     IQP"
     gene            2861..3704
                     /locus_tag="VF788_03570"
                     /pseudo
     CDS             2861..3704
                     /locus_tag="VF788_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698230.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
BASE COUNT          551 a         1188 c         1309 g          656 t
ORIGIN      
        1 tcgttggtcc agacctcgtt accacccgag atctcgttgc ccgaaatctc gttgcccgag
       61 tcgcccgcgc tggtctgcga ggccggtgtt gttgtccaag cgaacatggc ggcggtcgag
      121 ctcgccggcg gctggttccc cgactcactg atcggcctgc cactgcacag cctgctggtg
      181 ggcccagaaa cggacaccgg cacggacgcc gacctgatcg gttcggacgg gcgcgcgata
      241 ccggtgcgag tgacgcgctg gaacttgccg ggtaccaacc tgctcgtggt gttcctggtc
      301 gatgtctctg atctgcgccc gcccgccggc tcgctggaca ccggcgagct cgcccaggag
      361 aacgcccggc ttcagcaggc gcaacggatc gcccgcattg gcagtttcac ctgggactgg
      421 ccaactaaca agatcaccta tagtcctgct ctggcggagc tgttcggcgg tcactgtgct
      481 gacgccgacc cgttccggca catccaccct gaggatctgc cggaactgtt ccggcaggtg
      541 cacgagatgg tctccgatcc cgatgcgggc acagcggagg cggagttccg cgggctaccc
      601 gagcgcggtg agacgcacta tgtatgccgc gtgcaggccg agcgctcggc cagcggggag
      661 ccgttgcggc tggtgggcac cgtgcaggag gtcagccagg aacgagcgct ggagcgcgtg
      721 ctgcgtgcgg aacagcacag gctgacgcag gcgcagcggg tcgcccggat cggtacctgg
      781 gagtgggatc cgggctccga ccggctggtg tggtcggatg taatgcagga gctttacgga
      841 gttcatgccc ggcacacgac gtacgagact ttcctgtccc tggtacatcc cgacgaccgg
      901 gaatgggtgg acgggatgtg gcgccagctg gtgctcgacc cgcggccggt gagttgcgag
      961 caccgggtgc tacgaccgga tggggtggtg cgcacttttc gctgccacgg tgccgcgatc
     1021 gccgatgcca ccggcggctc tcggctggtc ggcactgtgc aggacgtcac cgagcagcgg
     1081 gcggcggaga cccggatgat gcgctccagc cagcgttttg cggacttggt ggcgattacc
     1141 ccggtgggca tcgggatctt cgacgacaac gatcggctcg tcgacgccaa cgaagccctg
     1201 tgcaagctgc tgggttatga cctggagacc ctccggggga tgagctccaa ggcgctgacc
     1261 caccccgatg agccatccgt ccggttgggc acccacccca gcggcaggtc cgagagctac
     1321 acggtgccgc agcggatgct gctgcgggcc gacggtgacc cggtgttctg cgaactgcac
     1381 gtctcggcgt cggtgcagga tgacggccag cgcttcctcc tggtgatctt caccgacatc
     1441 accgagcgac gccgggtagc cgaggccctc acgtaccggg ccacgcacga cgagctcacc
     1501 ggcctgccca atcgggctgc gatcaaggac accttgaccg agttgttgag tttcggcgga
     1561 gccggcgtcg cggtgctgtt ctgcgacatc gacaacttca agcgggtcaa cgacgcgatg
     1621 ggccatgatg ccggcgacga gctgctggtc gccttggcgc ggttgctgcg ggatgggttg
     1681 cctgcgggct gcaccgctgg ccggctctcc ggcgacgtct tcgtggtgat ctgctccgat
     1741 gtcactgccc agggcggtat cggttccctg accgccacgg tctccggact gctccgcacc
     1801 gcgatcccgt tgcggggcca gacgatccgg gtgtcagcgg ccgtcggagt ggctgtgccg
     1861 gatgcctcga ccaagggcgc ccaggatctg atgcgctttg ccgatgccgc catgttcgag
     1921 gccaagcgga ccggcaccgg acatttcgcg atggccaacg cggcgctgat cgcatctgcc
     1981 gatcggcagg tggagctgga gtgcgagctt cgcgaggcgc tcgcccgcga cgaactgcag
     2041 ttgaactacc agccggtggt caattcagcc ggagtcatcc tgtccgcgga ggcactgatc
     2101 cgctggccgc atccggagcg cgggatgctc agccccgggg tgttccttcc ggtggccgag
     2161 cagggcggtc tgatgcggga actggaccgg tgggtgttgc ggaccgcgct ccgcgaggcc
     2221 cgtgattggg tttcgtggga tgggcgcccg gtcgccgtcg cggtcaacct cgccgatccc
     2281 ggcgaatctg acttcgttgc caccgtcgcg aatgcgatgg ccggcagcgg gctgccgtgg
     2341 gaacagttgg tgctggaatt ggtggagacc acgctgatcg atctgtccga gacgacccgg
     2401 caggcgatgg cggaactggt cgagcggggg gcgcgcttcg cggtagacga cttcggcacc
     2461 ggctactcct cgctcgcccg gctcaaggat ctacccgcgc agatcgtcaa gctggaccgc
     2521 caattcgtct ccggggtggg tgctgacccg tcggacttcg cggtggtccg tgcggtggtc
     2581 gacatggctc acgcgatggg gcgggtctgc gtcgccgagg gtgtcgagac ggtggaccag
     2641 ttccgggtgc tgcggagcct cggagtggac tcctaccagg gttggctgtt ctcccgcgca
     2701 ctccccgctg ccgaattccg cgcccttctc caccacggcc ccatccagcc ctagcgcccg
     2761 ccccgcaccc cgacatggag acatatcggg gttaaccgga cgccgtttac cccgatatgt
     2821 ctccatgtcg ggatggcccg tttcgggtta gtgttcggaa atgatcgagt ttcggggcgt
     2881 cagcaaacgg ttcgatgacg gcaccgaagc agttcacgtt ctggacctcg tcgcttccga
     2941 agggcagatc acggtgcttg tcgggccatc gggctgcggc aagaccacgt cgctgcgcat
     3001 ggtcaaccgg atggtggaac ccagttccgg aacggtgctg ttcggcggcc ggaacgtccg
     3061 gtcgcaaagc cggctcagct gcgcaggggc atcggctacg tcatccagca ggccgggctg
     3121 ttcccgcacc gcaccgtcgt agacaacatc gccacagtgc cgctgctgac cggtgcgacc
     3181 cgccgggcct cccgggctcg agcgctcgag ctgctcgagc tcgtcgggtt ggccaccggg
     3241 ctgggtgacc gctatcccgt gcagctctcc gggggccagc agcaacgggt cggggtcgcc
     3301 cgggcgctcg ctgccgaccc gccggtgctg ctgatggacg agccgttctc cgctgtcgac
     3361 ccagtggtcc gggaggactt gcaagaccag ctgctagggc tgcagagcga gctgggcaag
     3421 acgatcctgt tcgtcaccca cgacatcgat gaggcgatca agcttggtga cgccgtcgcg
     3481 gtgttacaga ccggcggtgt gctggcccag ttcgatccgc cgcagcggct gctcgacgaa
     3541 cccgccgacg agttcgtggc cggcttcgtc ggacgtgatc gtggctaccg ggcgctgtcg
     3601 tttctcgccg caaccgatct accggtgcat gagttggaca cggtgcgggt cggtgaaggt
     3661 gggactggag tggggtggcg gctggcggtg gacgccgagg gccg
//
LOCUS       DASVXZ010000180         1520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_547763, whole genome shotgun sequence.
ACCESSION   DASVXZ010000180 DASVXZ010000000
VERSION     DASVXZ010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_547763"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            768..>1520
                     /gene="ltrA"
                     /locus_tag="VF788_03575"
     CDS             768..>1520
                     /gene="ltrA"
                     /locus_tag="VF788_03575"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019332377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEX8933272.1"
                     /translation="MGGPQPKVKSFEIDKRLVYGAWERVRANRGAPGVDAVRIAEFES
                     RERDHLYKLWNRMSAGSYLPAPVRAVEIPKEQGVRVLGVPNVADRIAQTAAAMLLEEK
                     LEPIFHPDSYGYRRGRSAQDALAVTRRRCWKQDWVLDLDVRVFFDSVPHDLLLKAVAH
                     HTQERWVLLYIARWLKAPMQMSDGTLIAREKGTPQGSPISPLLANLFMHYAFDTWMAR
                     EYPGCPFERYADDVVVHCDTEEQAHQLRAAIAA"
BASE COUNT          275 a          422 c          579 g          244 t
ORIGIN      
        1 aggacacctg tgcgtggctg accgcgcacg cacatgcctt ggtggtcgca gagctgctgc
       61 ggaccacgtg gcggtcggtg accgcgatcg tgggtcgggt ggtcgccgag gcagccggcc
      121 gtgccgaccg gttgggcggg ctacgccgaa tcggctgtgt gtcctgaaag gagagtgacg
      181 gcgatgtaga aggtcgccag cacgaaccgt gctgtgccag tgatggggga cggccctccg
      241 ggttcgccgt gcaggcggag agcccaaacc gccgcagtgt catgccggtc aagagccggg
      301 gtgggaagcg actgtggata aggcccgctg ccagcgggtc aggtgagcga cgagaagacg
      361 aacgtgtgtg aaccactgct gatgcatcga aatcggcaag gttggcatcg aaaccggagg
      421 cgtgccgaac ctccgggaca aaggcatgcc cataacttgg gcatgccctc agccggggag
      481 cggcctgcgt gtggccccgg cggtgcccgg tgtaaaggtg gcgtgagctc gtcgcaggcg
      541 ctggcatgga acaggagaac ctgtcgcctc gagaccgacg gtcagggccg gtgtgtcttg
      601 gccgcgagag ggaggatccc gagtggcgga aaccgcgagg ggcagagtac cgcgaggcac
      661 aggggcggac cggctcgtag tagtgatgaa ggtcctgtaa tggggccgga gcgaaggggc
      721 cgggcaggcc aggtcacctt gaggccaacc ctgtggggga ggagctgatg ggcggaccgc
      781 agccgaaggt gaagtcgttt gagatcgaca agcgcctcgt ctatggggcg tgggagcggg
      841 tccgggccaa ccgaggggcg ccgggcgtgg acgccgtgcg catcgccgag ttcgagagcc
      901 gggagaggga ccacctctac aagctgtgga acaggatgag cgcgggtagc tatctacccg
      961 cgccggtgcg ggcggtggag ataccgaagg agcagggggt gagggtgtta ggtgtgccca
     1021 acgtggcgga ccggatcgcc caaaccgcgg cagcgatgct gctggaggag aagctggagc
     1081 cgatcttcca cccggacagt tacggctatc gtcgtgggcg ttcggcccag gacgcgctgg
     1141 cggtgacacg tcgacgctgc tggaagcagg actgggtttt agaccttgat gttcgggtct
     1201 tcttcgacag cgtcccgcat gatctcctac tcaaggcggt agctcaccat actcaggagc
     1261 ggtgggttct gctgtacatc gcgcggtggc tgaaagcccc catgcagatg tcggacggga
     1321 ccctgatcgc tcgggagaag ggaaccccgc aggggtcgcc gatctccccc ttgctggcta
     1381 accttttcat gcactacgcg ttcgacacct ggatggcccg ggagtatccg gggtgtccgt
     1441 tcgagcggta cgcggacgac gttgttgtcc actgcgacac cgaggagcaa gctcatcagc
     1501 tgcgggcagc tatcgccgcc
//
LOCUS       DASVXZ010000181         2225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_906479, whole genome shotgun sequence.
ACCESSION   DASVXZ010000181 DASVXZ010000000
VERSION     DASVXZ010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906479"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(333..512)
                     /locus_tag="VF788_03580"
     CDS             complement(333..512)
                     /locus_tag="VF788_03580"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933273.1"
                     /translation="MDGDDLLCGGRGNDTLNGAADDDTMGGGQGADRFSGGPGTDTAT
                     DFNASQGDTKDSTIP"
     gene            complement(536..1117)
                     /locus_tag="VF788_03585"
     CDS             complement(536..1117)
                     /locus_tag="VF788_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019808800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8933274.1"
                     /translation="MGKVIVMNWVTLDGVMQGPGSPDEDTRDGFEHGGWATPYGDEET
                     GTKMGERMGDDRAWLFGRRTYEGLLASWNAQGGPFKDALNNTPKFVASGDSATRLDWP
                     NSTLLHGDVPAGVAELKESSGANLVIMGSGELIGSLTAADVIDEYLLMIAPVVLGTGR
                     RLFASGVQASLRLVEGVTTRTGVVMATYERSRG"
     gene            1403..1915
                     /locus_tag="VF788_03590"
     CDS             1403..1915
                     /locus_tag="VF788_03590"
                     /inference="COORDINATES: protein motif:HMM:NF044575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933275.1"
                     /translation="MIFSKQRDPRLVTVRRGGTLQDADHHRLALWAADCAEHVLHCFE
                     RVRPSDDRPRRAIELARAWARGDITMTQARTAAFGNAAAREVSGAAKQAALAAGQAVA
                     VSHVPAHELGAAAYAIRAACAAAPEGEQEQAGRLECQWQRAQLPSEIRELVLDDQKLR
                     NEVCWSVFDC"
BASE COUNT          405 a          697 c          692 g          431 t
ORIGIN      
        1 tacatcaggt agcccagcaa cagcccgttc cccacgccga caaagaaccc aggtccgagc
       61 agaaacgtcc aatcatggag cgcgaccagc gccttgccgg cggtgaggag cgagccggca
      121 tcagcgcccg ccgtagcctc ctggcgcaac gtcacgatcg taaggaggct caacccggat
      181 tattcacgaa gccgagcttc gttgatgaat aggggcaatg tgattttgag tggttggagc
      241 caatgtgcgg gcagttagcg gcctttcagg ggtattctcg gtctttccgc gagcgaaccg
      301 aagcccgtca gatcgttcat gaataatccg ggttaaggga tggttgagtc cttggtgtct
      361 ccctggctgg cgttgaagtc ggttgccgtg tcggtgccag ggccgccact gaagcggtcg
      421 gcgccttgac cgccgcccat cgtgtcatcg tcagcagcgc cgttgagggt gtcgttgccc
      481 cgtccgccgc agaggaggtc gtcgccatcc acgccgttta accggcggtc gtctgctatc
      541 cccgagaacg ctcgtacgtt gccatcacga cgcccgtgcg cgtagttacg ccctcgacga
      601 gacgaagcga tgcctgtacg ccgctggcga acagccgccg tccggtgccc agcaccacgg
      661 gcgcaatcat cagcaggtac tcgtcgatca catcggcggc cgtcagagag ccgatcagtt
      721 cgccgctacc catgatcacg aggttcgcgc ccgagctctc ctttagctcc gccacgccag
      781 ccggaacgtc gccgtgcagc agggtcgaat tcggccagtc gagcctcgtc gcggagtcgc
      841 ccgaggcgac gaacttggga gtgttgttga gcgcatcctt gaacgggccg ccctgggcgt
      901 tccaggaggc cagcagcccc tcgtaggtgc gccgcccgaa caaccacgcg cgatcgtcgc
      961 ccatccgctc tcccattttg gtgcccgtct cctcgtcgcc gtaaggggtg gcccagccac
     1021 cgtgctcgaa cccgtcccgg gtgtcctcgt ccgggctgcc cggtccttgc atgacgccgt
     1081 cgagtgtcac ccagttcatc acgatcacct ttcccattcg ctgtcctttc gatctcgacg
     1141 gcgcgatccg gatgcgccgc ccggtggttg ccgagactgg ggttattccg gcctcttgct
     1201 ctcgtcgccc atcccggaag tttacgcccc ggtcttattc acccaagtga cccatggcct
     1261 tggtgggcca ccccgaagcc atgaaaatga gctgccgtca ggactatttt cacaccagtg
     1321 tgtggaaggt gtattctcgg aacttcggat gtacggagtt ctgagaagta gttaggcgga
     1381 aagaacagga aggggcagac gaatgatttt cagtaagcag cgggaccctc ggcttgtgac
     1441 cgtgcgtcgg ggcggcactc tacaggacgc cgatcatcac cgcctcgcgc tctgggcggc
     1501 cgattgtgcc gagcatgtgc tgcactgctt cgagcgcgtg cgccccagtg acgaccggcc
     1561 gcgccgcgcg atcgaattgg cgcgtgcttg ggcacggggt gatattacga tgacgcaagc
     1621 ccgcacggcc gccttcggaa atgcggcggc ccgagaggtg tcaggtgctg caaagcaagc
     1681 ggctcttgcc gccggtcaag ccgtggcggt atctcacgtg ccagctcatg aactgggtgc
     1741 agcggcttac gcgatcaggg ccgcatgtgc ggcggctcct gaaggagagc aagagcaggc
     1801 tggtcgccta gagtgccagt ggcaacgggc acagcttccc agtgagatcc gagaactcgt
     1861 gctggacgac cagaagttgc gcaatgaggt gtgctggtcc gtgttcgatt gctgaccggc
     1921 tcgctcgaaa cattggagtc gctcaacagg catgagcgtg cagtcaccta acggtggagc
     1981 tcaagctgag cgagaaagcg gttcgagtcc gctcgtcagc tctcttgttt ccaccatttg
     2041 caggataatc gtaaaacggg tgaatcccca gcaagagcgc ctaggccctt gtacaccacc
     2101 ccgtacacca attggggtgt gccgccacgc ttcgccagaa acctcacggc gtatctgcgc
     2161 tgcccggcag caacatgtgc gagtaggttt ccatgctctg cgtcgaccat cggtgcaaag
     2221 agggt
//
LOCUS       DASVXZ010000182         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_20063, whole genome shotgun sequence.
ACCESSION   DASVXZ010000182 DASVXZ010000000
VERSION     DASVXZ010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20063"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            385..>1523
                     /locus_tag="VF788_03595"
     CDS             385..>1523
                     /locus_tag="VF788_03595"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEX8933276.1"
                     /translation="MFAARLVTLALVLVEAEQKQQLSRSLLYLGAVYLAIFAVAHAAV
                     RWWAPYADPLLLPCAALLNGLGLVMIHRLDLTAVTTAGDSGPAVVTADAARQVVWTAV
                     AVVLFVAVVWWVKDHRGLASYGYTFGLVGLALLVLPGALPASISEVNGAKLWLRLGGL
                     SIQLGEFAKILIIVFVAAFLVNNRELFTTAGRRLLGMTFPRPRDLAPLLVAWGLSVGV
                     LALEKELGASLLIFGVVLVMVYTATERLSWVLIGLVFFAGGSVVAYQLFAHVRVRVQV
                     WSDPFAHYYESGYQVAQSLFGLASGGMGGTGLGGGRPELVPVANSDYIMAGIGEELGL
                     IGLAAVLMVYLMLVTRVCGPACLSATPSANCSPQACRSPSRCRCSS"
BASE COUNT          194 a          411 c          565 g          353 t
ORIGIN      
        1 cctttggcgc cgaacagcaa caccaccacg acgagcagaa tcaacaggtg ccaaacgctc
       61 aagccggcca tcaccctgtc tctcctggag ctgcgtgttt aggacgatcg ccagggtacc
      121 gtccctccgc gccgaggcca gccacctagg atgtcggtgc agcgtctact cgctggatga
      181 gcacgctggg ggaaacccgt ccgttacggt gatggcggtg acatcgctga aggtcgtcct
      241 ggtcatggcg ggggttctgc tggcgatcat ggtggtgttg gggatgctga ccttggggcc
      301 acacctggtg cggtcccgcc gcggccggca atgacgttgg cgggggcacc ggctaccggt
      361 cgtggtgttg agctggggtt gttggtgttt gccgcgaggt tggtcacgct ggcgttggtg
      421 ctggtggaag ccgagcaaaa acagcagttg tcgaggtcgt tgctgtatct gggcgcagtg
      481 tatttagcca ttttcgccgt cgcgcacgcg gcggtgcggt ggtgggcgcc gtatgccgat
      541 ccgttgctgt tgccgtgcgc ggcgttgctc aatggcctgg gcctggtgat gatccaccgg
      601 ctggacctga ccgcggtgac cacagctggt gattcgggtc ccgctgtagt gacggcggat
      661 gccgcccggc aggtggtgtg gactgcggta gcggtggtgt tgttcgtggc ggtggtgtgg
      721 tgggtgaaag accatcgcgg cttggcgtct tacgggtaca cgttcggttt ggtgggattg
      781 gcgttgctgg tgctgcccgg ggcgctgccg gccagtatct ccgaggtcaa cggggccaag
      841 ctgtggctgc ggctgggtgg gctgtcgatc cagctcggtg agttcgccaa gattctgatc
      901 atcgtgttcg tcgcggcgtt tctggtcaac aatcgggagt tgttcaccac tgcgggccgc
      961 cggctgctgg gaatgacgtt tccgcggccc cgggatctgg cgccgttgct ggttgcgtgg
     1021 gggctgtcgg ttggggtttt ggcgttggag aaggagctgg gtgcctcact gctgatcttc
     1081 ggtgtggtgt tggtgatggt gtacacggcc accgaacggc tgtcttgggt gttgatcggg
     1141 ctggtgttct tcgcgggcgg cagcgtggtg gcctaccagc tgttcgccca cgttcgggtc
     1201 cgtgtgcagg tgtggtcgga tccgtttgcg cactattacg agtccggtta ccaggtcgcc
     1261 cagtcactgt tcgggctggc ctctggagga atgggcggta ccggtctggg cggtgggcga
     1321 cccgagctgg ttccggtggc caactccgat tacatcatgg ccggcatcgg cgaagagctc
     1381 ggcctgatcg gcctggccgc agttttgatg gtctacctga tgctggtcac ccgggtttgc
     1441 gggccggctt gtctgtccgc gacaccttcg gcaaactgct cgccgcaggc ctgtcgatca
     1501 ccatcgcgct gcaggtgttc atc
//
LOCUS       DASVXZ010000183         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_468617, whole genome shotgun sequence.
ACCESSION   DASVXZ010000183 DASVXZ010000000
VERSION     DASVXZ010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468617"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            438..1889
                     /locus_tag="VF788_03600"
     CDS             438..1889
                     /locus_tag="VF788_03600"
                     /inference="COORDINATES: protein motif:HMM:NF033559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1634 family transposase"
                     /protein_id="HEX8933277.1"
                     /translation="MGIDDIEQVFDYGVLYAAHTLWEELGIGPLLREKMQQEGGEAPH
                     DMALFAMTANRLARPTSKLACYEHWLADEVYWPAAKALALEHLYRALDFLLRHVEALE
                     QEIFYRTADLLNADVDLIFWDTTTLYCEIDDEDDDGEVWEDQEIPALRKRGHNKEGRD
                     GNPQVVVGLALTRDGLPVRSWVFPGNTADVTTIHHLKDDLRGWRLNRCVFVGDSGMFS
                     EAHRQRLSRALGRYILAVPMRKVTEVQLEVLTRAGRYHDVAPNLRVKEVYVGTGERRR
                     RYVVCHNPDEAAREHAHRERLLELVRAELAALDARQADHPKKACELMASRRFGRYLRM
                     DARGRLSIDTTKVAAEAKYDGKFVVTTNDDTLDAADVALGYTSMTLIEGCFRRMKTTG
                     LQTRPIYHWRSHRIIAHVKLCVLALLLERAAELRCQQTWRTIRHTLDHLKVVRYRMHG
                     KTIVQSTQVTSPLANILRNLRIPLPKKILEVFD"
BASE COUNT          408 a          615 c          609 g          370 t
ORIGIN      
        1 ctgcgaagtt acgcaatctg catgaaaatc aggccgctta tagggagttt ccctattgcc
       61 cgagtttgcg gcgtataggc actttgaaag gcggaaaccc tgtattgata aggcttcgct
      121 gctgaaacga tccaaaatac atagatacat ggattggaaa atatcccttg ccatgaaggg
      181 aatagcacgc tacattccta ggcatgtacc tacgaaccac tcgacagcga cgcaagcacg
      241 gtcccgacgc catctactac cagctcgccg aaaattacta ccataaggag agacggcgct
      301 cggagacgcg tgtcatccat acgttcggcc gtgccgacca ggtcgatcct gaggccctgc
      361 gccgcctggc ccagagcatc ctacgcgtgg ccaacgacga gcgcattgat ctaccggccc
      421 gcacgttccc acccgaggtg ggcatcgacg acatcgagca ggtctttgac tatggggtcc
      481 tgtatgcggc ccacaccttg tgggaagagc tcggcatcgg cccgctgctg cgcgagaaga
      541 tgcagcagga gggtggcgaa gccccccacg acatggccct gttcgccatg accgccaacc
      601 ggctggcccg tcccacctcc aagttggcct gctacgagca ctggctggcc gatgaggtgt
      661 attggcccgc ggccaaggcc ctcgcgctgg agcacctcta tcgcgccctg gatttcctgc
      721 tgcgccatgt tgaggccctc gagcaggaga ttttttatcg cacagccgac ctgttgaacg
      781 ccgacgtgga tctgatcttt tgggacacta cgaccctgta ctgtgagatc gacgacgaag
      841 atgacgacgg ggaagtgtgg gaggaccagg agatccctgc gctgcgcaaa cgtggccata
      901 ataaggaagg tcgcgatggt aacccccagg tggtggtcgg gctggccctc acccgcgacg
      961 ggttgcccgt gcgttcgtgg gtgtttcctg gcaacaccgc cgatgtcacg acgatccacc
     1021 acctcaagga cgacttgcgg ggctggcggt tgaaccgctg cgtgtttgtc ggggacagcg
     1081 gcatgttctc cgaagcccat cggcagcggc tgagccgggc cctcgggcgg tacattctgg
     1141 cagtgccgat gcgcaaggtc accgaggtgc agctcgaggt gctcacccgc gccggccgct
     1201 accacgacgt ggcccccaac ctacgggtga aggaggtcta cgtgggcacg ggcgagcggc
     1261 gccgccgcta cgtggtctgc cacaaccccg acgaagccgc acgggagcac gcccatcggg
     1321 agcggctgtt ggagttggtc cgggccgagc tcgcggcgct cgacgcgcgg caagcggatc
     1381 accccaagaa ggcctgcgag ctgatggcgt cgcgccgctt cggacgctac ctgcgcatgg
     1441 atgcgcgggg ccgcctcagc atcgatacca cgaaagtggc ggcggaagcc aagtatgatg
     1501 gcaagttcgt ggtgacgacc aacgacgaca ccctcgacgc ggcggatgtg gcgctggggt
     1561 acaccagcat gaccctgatt gaaggctgct tccggcgcat gaagaccacg gggctgcaga
     1621 cgcggccgat ctatcattgg cggtcccatc ggatcatcgc ccacgtgaag ctctgtgtgc
     1681 tggcgttgct gctggagcgg gcggccgaac tccggtgcca gcagacgtgg cggacgatcc
     1741 gccacacctt ggaccacctg aaggtggtgc ggtaccggat gcacgggaag accattgtgc
     1801 aaagtaccca ggtgacctcc ccgctggcca acattctccg aaatctccgt attcccttgc
     1861 caaagaagat tctggaagtg ttcgactaga caaacactac ccgtctgcca tagatacatg
     1921 cttcccagcc cccctgtgta tcctcctgat ttatcttaat ttattgatct gtatatctag
     1981 ctgccgcaaa ctcaggataa aa
//
LOCUS       DASVXZ010000184         4273 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1723435, whole genome shotgun sequence.
ACCESSION   DASVXZ010000184 DASVXZ010000000
VERSION     DASVXZ010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4273
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1723435"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..801)
                     /locus_tag="VF788_03605"
     CDS             complement(<1..801)
                     /locus_tag="VF788_03605"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX8933278.1"
                     /translation="MVAGRYRLDAVLGRGTMGTVWSAHDEVLGRPVAIKEVLLPLGIP
                     DAEADALRERAMREARAIAALSHPNVVTLYDVAREGSAPFVVMELVASRSLAELTRDG
                     PLPPQQVVVIGAAVAAALQAAHAAGITHRDVKPGNVLVAHDGRIKLTDFGIARNPADR
                     TLTATGLMLGSPAYIAPEIASGGPVNPASDLWGLGATLFAAVEGRPPYDAGTAMATVA
                     AVVQDEVPTASCSGPLAEVIGNLMVKDPARRMPLTRVRQLLGATPEPTQ"
     gene            891..2458
                     /locus_tag="VF788_03610"
                     /pseudo
     CDS             891..2458
                     /locus_tag="VF788_03610"
                     /inference="COORDINATES: protein motif:HMM:NF013781.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
     gene            2841..4067
                     /locus_tag="VF788_03615"
     CDS             2841..4067
                     /locus_tag="VF788_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010315759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEX8933279.1"
                     /translation="MTLLQPSLLSAAEAPLDIAAGRGPSWLDEWLMGHGTELVAWRRY
                     LHSRPELAYSEHATTALIAERLTSAGLAPTLLPRGTGLICDIGTGPPCVALRADIDAL
                     PLTETTGLPFASGVDGVMHACGHDAHAAILLGAALALASAPALPGRIRLVFQPAEEVM
                     PGGALDVLAAGVLSGVDRIFALHCAPRLRVGQVGTRVGPLTSASDLLELRLSSPGGHS
                     SRPHLTADLVHALGTVITGLPSLLSRRVDARSGTVLVWGAVQAGQAANIVPQEGMVRG
                     ILRTGDRRIWADMEPLVRELVTALLAPTGVGFDLRHVRGVPPVVNEAASTELLCEAVV
                     AALGGDALTGTEQSAGGEDFAWYLEHLPGSMCRLGVWSGEGPQHDLHRPNFDLDERAL
                     PLGTRLMVHTALAALS"
     gene            complement(4113..>4273)
                     /locus_tag="VF788_03620"
     CDS             complement(4113..>4273)
                     /locus_tag="VF788_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HEX8933280.1"
                     /translation="SVLAWLYVLDAYEGGLPSARYLGVIADAAEAAGAPEDYVADLRI
                     RPCAGIGP"
BASE COUNT          657 a         1435 c         1468 g          713 t
ORIGIN      
        1 ctgggtcggt tcgggcgtcg cgccgagcaa ctggcgcacc cgcgtcagcg gcatccggcg
       61 ggctggatcc ttgaccatca agttgccgat tacctcggca agcggtccgg aacacgacgc
      121 ggtgggcacc tcgtcctgca ccaccgcagc gaccgtcgcc atcgcggtgc ccgcgtcgta
      181 tgggggcctg ccctccaccg cggcgaacag cgtcgcgccc agcccccaca ggtctgaggc
      241 cgggttgacc ggcccaccgg aagcgatctc gggagcgatg taagcggggg agcccagcat
      301 cagccccgtc gcggtcaacg tccgatcggc cggattgcgg gcaatcccga agtcggtcag
      361 cttgatccga ccgtcatgag cgaccaggac gtttcccggc ttgacgtccc ggtgggtgat
      421 ccctgctgcg tgcgcggcct gcaacgctgc cgccaccgcg gccccgatga caaccacctg
      481 ctgcggcggc aacggaccgt cgcgggtcag ctcggccagg ctgcgggagg cgaccagctc
      541 catcaccacg aacggcgcgg agccttcccg ggccacgtcg tagagggtca ccacattggg
      601 gtgggacagc gcggcgatcg ccctggcttc ccgcatcgca cgctcgcgca acgcgtccgc
      661 ctcggcatcc gggatgccca gtggcagcag cacctccttg attgcgaccg gccgcccgag
      721 cacctcgtcg tgtgctgacc acaccgtgcc catggtgccc cgacccagca ccgcgtcgag
      781 ccggtagcgg cccgccacca gccggggctc ggggttggtc acggccccca tgatgcctgt
      841 tgcggcgctc gccgcatcgc ggtccccggc ggggtatgaa tacagaggtg atggcggagt
      901 ctgggttcga ggtcaagccg gtgtaccgcg ccgatgacct ggccgccggt ctggccgacc
      961 gggtgggcga gccgggggag tttcccttca cccgcggggt gtatcccacg atgtacaccc
     1021 agcgaccctg gacgatgcgg cagtacgccg ggtacggcac agccaccgaa tccaacaccc
     1081 gctaccacca gcttctcagc gccgggcaga gcggcttgtc ggtggccttc gacctgccca
     1141 cccagatggg atacgactcc gacgaggcga tcgcgcaggg cgaggtcggc aaggtcggag
     1201 tggccatcga ctcgatcgaa gacatgcgga ggttgttcga cgggatccca ctggatgagg
     1261 tctccacgtc catgacgatc aacgcgccgg ccgggctgtt gctgttgctg taccaactgg
     1321 tgggcaagga gcagggggtg ccgggcacga agctgaccgg tacggtccag aacgacgtgc
     1381 tgaaggagta catcgcgcgg ggcacctaca tttaccctcc ggcgcattcc ctgcggctca
     1441 cctcggacat cgcctattgc aaggcggaga ttccgcgctg aacaccattt cgatctccgg
     1501 gtatcacatg gccgaagccg gcgcgaatcc agtgcaggag atcgcgttta ccctggccaa
     1561 cggcgtgcag tatgtgcagg ccgcactcga tgccgggatg gccgtcgacg agttcgcgcc
     1621 gcgattgtcg tttttcttcg tcgcacgaac cacgttactg gaggaggtgg cgaaattccg
     1681 agctgcccgg cggatctggg ctcgcatgat ggtcgagcgc tttggtgcgc gaaatccgaa
     1741 gtcgctgatg ctgcgattcc acgcccagac cgccggagtg cagttgaccg cccagcagcc
     1801 cgaagtcaac ctgatccggg tcactgcgca ggcgatcgcg gcgatcttcg gtggtgcgca
     1861 gtcgttgcac accaatgcct acgacgaggc gctcgcgttg cccaccgaga aagccgcccg
     1921 gctggccctg cgaacccagc aggtgctggc tcacgaaacc gacctgaccg ccacggtgga
     1981 tcccttcgcc ggttcctatg cggtggagtc aatgaccgac gagatcgagg ccgccgtggt
     2041 cagcttgatc gagaaggtgg acgagttggg cggcgcggcg cacgccatcg aggtgggatt
     2101 tcagaaatcc gagatcgaac ggaccgctta ccagaccgct gtggagatcg attccggtga
     2161 ccgggtggtg gtcggcctca accgctaccg gcaggacgtc gaggatcctt accagccgct
     2221 gcgggtggac ccggcgatcg agcaccgcgc gcgggaacgc ctcgccgcgc tgcgctcgtc
     2281 gcgatcgtct gctgcggtcg agcgtgccct ggacgagttg cgacgcgccg ccaaggacgt
     2341 cggtggcaac gtgctctatc cgatgaagcg ggcgctggcc gcccgcgcca ccgtgggcga
     2401 ggtatgccac gcgttgcgcg acgtgtgggg cacctatgtg ccgtcagaga ccttctgaag
     2461 gaagctgacg agcaccgttc acgctagatg cgtgtcgcaa ggtgtgctca caaggccgat
     2521 cgacaatgct ggagccgcag gcagcagcgc agacaccggt cgggcagaat catagggtga
     2581 gtacaccggt agccggggtt ttcgaggtcg gacgcgacat catcgcggcg gcgtcgaccg
     2641 tgcggcgttg gcgccacgcg agatcgtcgg cgcgcaggat gtcacgatca agttgagtgg
     2701 aacacccgcc gaagaatctg gtgggggaac gtgctgcggc tccagcgagg ggtattagac
     2761 gacgtgacca tggagatgat ggtgcacctg gcgcctgagg acccttgtgt gcgcacgtcg
     2821 tccgccgccg gaggtgctgc gtgacactgc tgcagcccag tctgctctcc gcagccgaag
     2881 cgccgctgga tatcgcggct ggtcggggcc cgtcctggtt ggatgagtgg ctgatgggcc
     2941 acggtaccga gctggtcgcc tggcgcaggt acctccactc tcgcccggag cttgcctact
     3001 ccgagcacgc caccactgcg ctgatagccg agcgtctcac cagcgccggc cttgcaccca
     3061 cgctgctgcc ccgtggtacc ggtctgatct gcgacatcgg caccggtccc ccctgtgtgg
     3121 cgctgcgtgc cgacatcgat gcgctacccc tcacggagac caccggactg cccttcgcct
     3181 cgggcgtgga cggcgtgatg cacgcctgtg ggcacgatgc gcacgccgcg atcctgcttg
     3241 gtgccgcgct cgctttggcg tcggccccgg cattgcccgg ccggatacgg ctggtcttcc
     3301 agccggccga ggaagtgatg cccggtggtg ctctcgatgt gctcgccgcg ggcgttctgt
     3361 ccggcgtcga ccggatcttc gcgctgcact gcgctccccg gctgcgcgtc gggcaggtgg
     3421 gtacccgggt ggggcctctg acctcggcgt ctgacctgct tgaactccgg ctgtcctccc
     3481 ccggcgggca cagctcgcgc ccgcacctca ccgccgatct ggtgcacgcg ctcggcaccg
     3541 tgatcaccgg tctgccgtcg ctgctgtccc gacgggtcga cgcccgctcg ggcaccgtgc
     3601 tggtatgggg tgcggtgcag gccggccagg ccgccaacat cgttccccag gaagggatgg
     3661 ttcgcggcat tctccgcacc ggcgaccggc ggatttgggc cgatatggag ccgctggtcc
     3721 gtgagctggt taccgcgctg cttgctccca ccggggtggg ttttgactta cgccatgtgc
     3781 gtggtgtgcc gccggtggtc aacgaagccg ccagcacaga gctgttgtgt gaggccgtcg
     3841 ttgcggcgct gggcggcgac gcgctcactg gtaccgagca gtctgcgggc ggcgaggatt
     3901 tcgcgtggta tctcgagcac ctgcccggat ctatgtgccg actgggcgtc tggtcgggtg
     3961 aggggccgca acacgacctc catcgaccca acttcgacct cgacgaacgc gccttgcccc
     4021 tcggcacgcg cctcatggtc cacaccgccc tggccgccct ttcctgatcc ctcctttccg
     4081 gcatgtcgcg ccgacatgcc ggaaaggagg gatcaggggc cgatgccggc gcaggggcgg
     4141 attcgcaggt cggcgacgta gtcttcggga gcgcctgccg cttcggcggc gtcggcgatg
     4201 acgccgaggt agcgcgccga gggcaggccg ccctcgtagg cgtccagcac atacagccag
     4261 gcgagcaccg agc
//
LOCUS       DASVXZ010000185         5924 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1444692, whole genome shotgun sequence.
ACCESSION   DASVXZ010000185 DASVXZ010000000
VERSION     DASVXZ010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5924
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1444692"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VF788_03625"
     CDS             <1..639
                     /locus_tag="VF788_03625"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8933281.1"
                     /translation="RELYGYSSDLINRKLVDPDDRLLSKISAAFKAVRLNDDEIVAAS
                     GTILAGFYTPFGIFSVSAVELLQRPDVVEACKKEPRLWERTAEELMRYKAHFNFFLPR
                     VATEDVTLGDVKVRAGQVLLPSLHAAVTDPESCTDPGVFDIHRVQPRYNIVFGAGPHF
                     CPGAALSRQWLQVGLERLFTTLSGMRLIKQYGDLEWLPGSVSMPKEVTVTWD"
     gene            complement(636..1103)
                     /locus_tag="VF788_03630"
     CDS             complement(636..1103)
                     /locus_tag="VF788_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010695937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEX8933282.1"
                     /translation="MRQLGEVGLSAVRIVVSFLFACHGARILFGIFGGAGEHGPTAPV
                     GSWPIWWAGVIELVGGGLILLGLSTRAAALLCSGAMAFAYFTVHQPQGPLPLQNHGEL
                     AALYCWIFLLIAILGPGRFALDTVLRKTRICTQAAEVTFLSARRDDGVDYNAG"
     gene            complement(1402..1866)
                     /locus_tag="VF788_03635"
     CDS             complement(1402..1866)
                     /locus_tag="VF788_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933283.1"
                     /translation="MSFAANSPDLQVTQGRLLANQTDIGNAIKPYYGPDAGSKLTALL
                     QQHIMAAAGVLKAAKTGNTTDVAQAKAVFYANGNQIADFLHGANPGNWPLDAAQNMMK
                     THLDQVAEMGSDELTGHYAESVGVWNAYRDHILAMADTLSTGIIKQFPDRFN"
     gene            complement(2250..3770)
                     /locus_tag="VF788_03640"
     CDS             complement(2250..3770)
                     /locus_tag="VF788_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933284.1"
                     /translation="MRSEEHRAVGQAAAGGALVQVGGDSAEESLVLGYGDVVALSGDF
                     FASHHCGTHDGDDGQVRREGIASDDLFELAAIPGSYGTKLGTRDEIICALKVMAVDGG
                     VVDARFEPGGEFSDFRFTATAAVTEVERRVRDRFLALAAANGDHFVAPGPPISAHDHS
                     CPYCPPSSRFDSAVMAYHRLHEVAVNEACRLGWWGGDLSRAMAREAAAQHYLTDAFAA
                     GHLRTPVTAIRRFWHRRYPRFWESLQGKVAADTATALRELTRLARILPGDVLYDHALV
                     AVKARTRRFPLISLGDLLARVFHDWDDSHGLALQGGGLLFGDGHLEQGVGKQLAVTAA
                     RAGIEDIEVAYQLGVSGSPLRGAALHRAVRSATGAPHDTFRPETWIPTPSADNPAQNW
                     QATDAETLWNSPIVGTSGTTVGIAVEETLRIGAEVFHRLDRLEPGVFEVPSLLGVPAL
                     RRWAAREARRAYHHGFIRNLTQDPKATVLAVVGHEEDSHTSVSTSDWAAHVVRPAV"
     gene            complement(3767..3919)
                     /locus_tag="VF788_03645"
     CDS             complement(3767..3919)
                     /locus_tag="VF788_03645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933285.1"
                     /translation="MARHRRPAYEWEITPASHVDVLDLIVGADDGALEGDRAGQRPRA
                     AGSGVR"
BASE COUNT         1116 a         1777 c         1904 g         1127 t
ORIGIN      
        1 cgtgaactat acggctacag tagcgacctt attaacagga aactcgtcga tcctgacgac
       61 aggctgcttt ctaagatttc tgctgcattt aaggccgttc gtctcaatga tgacgagata
      121 gtggcagcct ccggtacaat acttgctggg ttttatactc catttgggat cttcagtgta
      181 tccgcagtcg aacttttgca acgtcccgat gttgtggaag cgtgcaagaa agagccgaga
      241 ttatgggaga gaaccgctga agagctgatg cgttataaag ctcacttcaa ctttttctta
      301 ccacgagtgg caaccgaaga tgtcacgctg ggggacgtaa aagtccgagc gggtcaagta
      361 ctgttgccat cattgcatgc ggcagttacg gatccggagt catgcacgga tcctggcgta
      421 tttgatatac atagagtaca gcctcggtat aacatcgtct ttggtgcagg tccacacttc
      481 tgtccaggag cggcattgtc tcgtcagtgg ttacaagtcg gcctcgaacg actttttaca
      541 actctatccg gtatgcgatt gataaagcag tatggtgatt tagaatggtt accaggttcg
      601 gtatctatgc ctaaagaagt gacagttaca tgggattagc ccgcattgta gtcgacgcca
      661 tcatcgcggc gagcggatag aaatgttact tcggcagctt gtgtgcagat ccttgttttc
      721 cgaagcactg tgtccagggc aaagcgaccc ggcccgagta tcgcgattaa caggaagatc
      781 caacagtaca gcgcagccag ttcaccatga ttttgcaggg gaagcgggcc ctgcggctga
      841 tgcacggtga agtaggcaaa ggccatcgca cccgagcaca gcagcgctgc cgcccgggtg
      901 gacaggccga ggagaattag tccaccaccg accagttcga tcacacctgc ccaccagata
      961 ggccacgacc ccaccggtgc cgtaggccca tgttccccag cgccaccgaa tatgccgaac
     1021 aggatccgcg caccgtggca ggcgaacaga aacgacacga cgatccgaac tgcggacagt
     1081 cctacttccc ccagttgcct caaggcgtga tgcggcggag cggacagggc ggcaaccggc
     1141 cgcgtgacgc tggatgacga cgtaccggta gtgatcacga aatactccct gggcgtcgtc
     1201 gcggtttgca tcttgatccg aacgcggatt ctgcccggcc gtatgtcact tttatctcct
     1261 tccagctgag accggtgcag gtgcactggt tcctagccgg ctgcggccca accgtgcggt
     1321 agctgcgtaa gtatcgacgt cattggcctg cgtcgggagt ctcggaaggc tggagagact
     1381 gctggcggag gggatcagcg atcagttgaa gcggtcaggg aattgtttga tgatgccggt
     1441 cgagagcgtg tcggccattg cgaggatgtg gtcgcggtag gcgttccaga caccgacgct
     1501 ctccgcgtag tggccggtga gctcatcgga tcccatctcg gccacctgat ccaggtgtgt
     1561 cttcatcatg ttttgcgctg cgtctagcgg ccaattcccc gggttggcgc cgtggagaaa
     1621 atcggcgatc tggttgccgt tcgcgtagaa caccgctttg gcctgcgcaa cgtctgtcgt
     1681 attaccggtt ttagcggcct tcagcacccc ggctgcagcc atgatgtgct gctggagcaa
     1741 ggcggttagc ttgctgcccg cgtcggggcc gtagtaaggc ttgatggcgt tgccgatatc
     1801 ggtttggtta gctagcaggc gcccctgggt gacctgcaga tccggggagt tggctgcgaa
     1861 gctcacgatc gtcaggcgag tccacgtccc gtggtcctgc cacaactcgc gcatggcgtc
     1921 gtggaacgcg cctgccttgg gactcggggt ctgagcgggc gcggacgtcg gactggattc
     1981 accggagctg caggcggcta cggcaagggc tatcgcagcg atgcccgccg cgatacgtgc
     2041 gcctctagaa cgcggggtag cactcatcat gaccctctat agctctaacg tacacgttaa
     2101 attgtaatac attgctcatc ccaggccaac ccccaaacac ccccaggtcg ctgaacgaca
     2161 cgctgcacca gcggccggcg gcgcggatca tggtggtgaa caccagcttg agcgcggctt
     2221 ttcgcgctgg tacgtcacca ccggcgcgat taaacagctg gccggacaac atgtgcagcc
     2281 caatcacttg tgctgacgct cgtgtgcgag tcctcttcgt ggccaacgac ggcgagcacg
     2341 gttgctttgg gatcttgggt gaggttgcga atgaaaccat ggtgataggc gcggcgggct
     2401 tcgcgggctg cccatcgtcg cagggcaggc acgcccagga gacttggtac ctcgaatacg
     2461 cctggttcta ggcgatcgag gcggtggaag acctcggctc cgatgcgcag ggtctcctcg
     2521 actgcgatgc cgacggtcgt gcccgaggtg ccgacgatgg gagagttcca taatgtttcg
     2581 gcgtcggtgg cctgccagtt ctgggcaggg ttgtcggctg atggggtcgg gatccaggtc
     2641 tcgggtctga aggtgtcgtg gggggcaccg gttgctgacc ggaccgcgcg gtgaagggcc
     2701 gcaccacgca gcgggctgcc cgagactcca agctggtagg cgacctcgat atcctcgatg
     2761 ccggcacggg cagcggtgac ggcgagctgt ttgccgacgc cctgttcgag gtgaccatcc
     2821 ccgaagagca ggccacctcc ttggagggcg aggccatggc tgtcgtccca gtcgtgaaat
     2881 acccgggcca acagatcacc caggctgatc agtggaaacc gcctcgtgcg ggctttcacc
     2941 gcgaccagag catggtcgta caggacgtca ccgggaagaa ttctcgccag tctggtgagt
     3001 tctcgtagcg ctgtggcggt gtcggcagcg actttgcctt gcaggctttc ccaaaaccgt
     3061 ggataccggc gatgccagaa gcggcggatg gccgtgaccg gagttcgcag gtgccccgcg
     3121 gcgaaggcat cggtgagata atgctgggcg gccgcctccc tggccatcgc ccgggacagg
     3181 tcaccccccc accaccccag tcgacaggcc tcgttcacgg ccacctcgtg gaggcggtga
     3241 taggccatga ctgctgagtc gaagcggctg gagggcggac agtacgggca cgagtgatcg
     3301 tgcgcggaga tgggtggacc gggagcgacg aaatgatccc cattggccgc ggccagagcc
     3361 aaaaagcgat cccggacccg cctttcgacc tcggtcaccg ccgcagtcgc ggtgaaccgg
     3421 aagtcactga actccccgcc gggttcgaag cgggcgtcaa cgacgccgcc gtccaccgcc
     3481 atcaccttga gcgcacagat gatctcgtct cgggtgccaa gcttggtgcc atagctgcca
     3541 ggaatggcag ccaactcgaa caagtcgtcc gacgctatgc cttctcgtcg tacctgaccg
     3601 tcgtcaccat cgtgggttcc acagtgatgg ctggcgaaga agtcaccgct taaggcgacc
     3661 acgtcaccgt aacccaagac caagctttcc tcagctgagt caccaccgac ttgcaccagc
     3721 gcgcctccgg cagcggcttg ccccacagcg cgatgctcct cggatctcat cgcacacccg
     3781 accccgccgc gcgaggacgc tgtccggccc ggtccccctc cagggcgccg tcatcagcac
     3841 ccacgatgag gtcaaggacg tcgacgtgag acgcgggcgt gatctcccac tcgtacgcag
     3901 gccgccgatg acgggccatg ggaacactcc cttctaataa cgaaatttgt tgctgttaga
     3961 actctaacga caggcgctaa tttaatcaag ttttattgtt tttagaaggg gtgccacccg
     4021 ccgacgtact gcctgccggt caccacggca cggactgcat cgacgcgcag gggcacagca
     4081 ctcgtctgac gtctcgcggt gcagttcttc agacgggctc ggccaccgga gtctccgccc
     4141 acgcaacctc atcggcgccc gtacccgaag gccaccgcat ctcacgcgcc cagccaggcg
     4201 gcgcagacac cacatccact accagcgaag cggtttccgc aatgccggac cgccccccag
     4261 cggcgtgacc aatccctgtg tggccggacg gtggaaagca cggcacctgt cgagacgtag
     4321 cggaacgaag tgtgtcgtgg tcgggcaggc gcggtccccg gcggctccgg ctgagcacaa
     4381 gtgtcgggcg ccaagtgctg catggttccc cggtggccgt tgccctcccg tgccgtggcc
     4441 tgaaaccgcg agccgggatc gacggcatca ttctggccgt cgatgctgag agtttgatcg
     4501 acggcattgg cttacatcga ccttcaccga acccgccctc gccatctgaa tgggcagcgc
     4561 agcggaaggt gtcgtctgcg tcccgcttac acaacaggtt ccgtcgaggt gtgctgtgat
     4621 cccgacggca tggctgtaag gctgcacttg acgctgctct gatggcccaa tcgacgacgc
     4681 ctgcgtcagg gcgcggcctg cacaggctct ccggccgggc gcgacgtatg ccttcgcgcg
     4741 ccatagttcg ctttgtatgg atgatcgaaa ccacagggat ccgccagaga tgcttcgagc
     4801 ggtaactgga ctatggtacg cgtgacagtg gtggtaaatt cgcgggttga cagcgctggt
     4861 cgagggtgtt aaaaaatgcg gcgacaacag tgaacggtcc agtaagtgct cgcacgaggc
     4921 agcgcaaggg caggtgcaca agggaactca ggaggttgag gaacggtcgg gatggaggtg
     4981 gtcgccgcga cgtttcggcg tacatcggaa tcaagacaag ttcattacct cacaaagggg
     5041 cccggccacc cacccggccg ggcccctttc ttgtgcacac ctcgcgctga tcgagtagtc
     5101 gtgctccgtt cgggattcgt tctggactga cgggctagct gccgctcgtg gggacacggc
     5161 tggggtgccg cttaaaatgc aggaccactc atgagggatg aggaccagta atcatcgcca
     5221 cgataacgcg tgaggtgatc gtggaacacc gttggcgctg cagcggcgag cgccgagtgg
     5281 agcggcagcg tgctgcccgg ccgagggttc ctatcaactg tgcgcgtcga cagacagtct
     5341 cgcggagcca gaatggtggg gcggggccgt tcctcgtgaa cggccccgcc ccgttgcggg
     5401 tgcctgcgcg gcacgtgtcc ggcgcccgat ggggtctccc ggcctgcggt gcacgagggc
     5461 accgggcagg agggatccgg cggtcatggg accaacgtgg acggtggcgg ccggtcagac
     5521 aacgacggcg ccaccggcgc ggcactccac tcgggtggga agcgcactgg gtccaactgt
     5581 ggagttgtcc cccggtgggc gcggtgccct gccggggtgg tgacactccc ccaggttcgc
     5641 cgctcagatt cgccgctcgg agcgtgcagg cgggggatat tttggtgtgg ccggtgatcc
     5701 ttcgacatct cggtcggggg cacggacgtt tcgccggatc accggccaca tggcggctgc
     5761 tcagccctcg tgggtggggg ggtacaccca cgacgttcgg cgagaccgcc cgctctatgg
     5821 agttgaaatt cagctcccca cccgctacac ctgctccgac gggcgggaga gtcggcgctc
     5881 ggggcagatg aggtgctcgt gcgcggcgtg ccatacgctg cacg
//
LOCUS       DASVXZ010000186         3057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_906885, whole genome shotgun sequence.
ACCESSION   DASVXZ010000186 DASVXZ010000000
VERSION     DASVXZ010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3057
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906885"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            258..458
                     /locus_tag="VF788_03650"
     CDS             258..458
                     /locus_tag="VF788_03650"
                     /inference="COORDINATES: protein motif:HMM:NF016070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8933286.1"
                     /translation="MLQPPSPGGWRKSSRSGSGACAEVSRVHGHVWVRNSRSRELVLG
                     FPRDAWAVFIVGLRRDEFESAS"
     gene            complement(516..776)
                     /locus_tag="VF788_03655"
     CDS             complement(516..776)
                     /locus_tag="VF788_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933287.1"
                     /translation="MTPGWILLVGGLALCFGLLLGTTWTVQAMQPRLRRQAEDRRKLN
                     EEWLAVRFARQQRERCPYCALRLAEYDQDSQQAPVEDPPDDD"
     gene            1127..2029
                     /locus_tag="VF788_03660"
     CDS             1127..2029
                     /locus_tag="VF788_03660"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8933288.1"
                     /translation="MSGIQLTDRENEVLHLAVEGLSNDEIAARLAISRRTVEAHMRAL
                     FRKIGVTRRAQLAGLSRSDDGRVDQRSPLALDSADGPGRPREDYERQLRRYADAVRGL
                     VDRQFVLFEERVEITLVIGDQDGQDLVIERRWTTPRPYLVYRILGPIVPWPAPFELDD
                     LALACTVHGRDIQVEIHEVRDVDERPLLLILFQPGLGSDTEWVLRYNSPGLWSPLRSS
                     GRDSLTWSTATFDQRHAATTSELTLKVVFPASWTGERLTEESHLGTIHTERLSTGQTQ
                     LTWYHDTPRASAYHWQLKGSPSGS"
     gene            complement(2012..>3057)
                     /locus_tag="VF788_03665"
     CDS             complement(2012..>3057)
                     /locus_tag="VF788_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding domain-containing protein"
                     /protein_id="HEX8933289.1"
                     /translation="DPQRLASATHRLLESAECDLLGRPVPDPATNPDQVWTPADVPLL
                     DEAAELLGSDGSAEAAREAAALRAELQYAQGVLDILDLDEDLDPELLRATDLIDADRL
                     ADRQRTRNYDSTAERAAADRTWAYGHIIIDEAQELSPMAWRVLMRRCPSRSMTVVGDL
                     AQTGNRSGAASWQDVLGPYVAQRWRLEQLTVNYRNPAEIAQLADRVLAAIDVDITPPR
                     SVRHTGVLPRYVQFRALAEQLPALVAEEAAAVGNGRMAVLGPDARVAELRNLVPAASD
                     DDLEAPVTVLTVAQVKGLEFDAVVLVDPAAILTESPRGLNDLYVALTRTTNRLCIMHP
                     GELPDVLTSAPGR"
BASE COUNT          508 a          949 c         1054 g          546 t
ORIGIN      
        1 tctgcttcat ggcagttgat gaaggtgccc tcaccttaaa cgcctggcac ggtcggtgtc
       61 gctcacttag agggctgccc gtcatcccgc agcttcagcg cgtctacccg agcgcactgg
      121 ttaacccccg gaatcctccc gttgagggag gtgaggcctg gtgtaccagc cttaacgtgc
      181 tggcatggcc cacgcaacgg cttcggagcg actcctgggg gccgcgagcg ctgagtgagg
      241 agaacggcat ggtcacaatg ctgcaaccac ctagcccggg aggatggcgg aagagcagcc
      301 ggagtggctc aggcgcctgt gccgaagtct ctcgcgttca tggccacgtc tgggtgcgga
      361 actcccggag tcgggagctg gttctcggtt tcccgcggga tgcgtgggcg gtgttcatcg
      421 tcgggctgcg gcgtgacgag ttcgagtcgg cgtcgtgacg gtggtggcca gctcacgatc
      481 tgcctaacag ttcgctcggc aatccacgga cgggactaat catcgtctgg tgggtcctcg
      541 accggtgcct gctgagaatc ctggtcgtac tcagccagcc gcagtgcgca atacgggcat
      601 cgttcccgtt gctggcgggc gaagcgaacg gctaaccact cttcgttcag cttgcggcga
      661 tcctcggcct gccggcgaag cctcggctgc atggcctgga cggtccaggt cgtgccgagt
      721 aggagcccga agcagagcgc cagaccgcct accagcagaa tccagcccgg cgtcacggtg
      781 ctcggcggag tattccgcca cgccgttgcg ctccctggct ggggcctact ggcctcgcta
      841 ccgaggggcg tgccgtgctc cagggggctg cgatgccaag gtgggtcgcg ggcggggggg
      901 ttagttttgg gaaagcatca ggtagtcgta cttcgtgccg cacccgccga ggtggagtca
      961 gctgagccac ctgatcacca cctagaaatg cctacgtact acactagaaa cacctagtag
     1021 cttgacacat aatataagta agtggcctaa tgactcaagc attactacgt gtgtgtgcgt
     1081 acgcaaaata ggcggccgcg ggaggccaac tgcggagggc aagccggtgt cagggatcca
     1141 gctgactgat cgggagaatg aggtccttca tctggcagtc gaaggactca gcaacgatga
     1201 gatcgccgcc cgccttgcca tctcacgccg gacggtggaa gcgcacatgc gcgcgctgtt
     1261 ccgtaagatc ggggtgacca ggagagccca gctcgcgggg ctctctcggt cagacgatgg
     1321 tcgggtggat cagcgctcgc cgctggcgct cgatagcgcg gacggaccgg ggcggccacg
     1381 ggaggactac gagcggcagc ttcgtcgcta cgccgacgcc gtacgcggtc tggtcgaccg
     1441 gcagttcgtg ctgttcgagg agcgggtcga gatcactctt gtgatcggcg accaggatgg
     1501 gcaggacctc gtcatcgagc ggcgatggac cactcccagg ccgtacctgg tgtaccggat
     1561 cctgggtccg atcgtgccat ggccggcccc gttcgagctc gacgatctcg ctctggcttg
     1621 caccgtgcat ggtcgggaca ttcaggttga gatccatgag gttcgggatg tggatgaacg
     1681 gccactatta ttgatcttgt tccagcccgg gctgggcagc gataccgagt gggtgctgcg
     1741 atacaactct ccggggttgt ggagccccct gcgcagttca ggtcgggatt ctctgacctg
     1801 gtcgaccgct actttcgatc agcggcacgc cgcgaccact agcgagctca ccctgaaggt
     1861 agtttttccg gcctcctgga ctggtgagcg gctcactgag gagagtcacc tcggcacgat
     1921 tcacaccgag cgcttgtcca ccggacagac ccagctgacc tggtaccacg acaccccgcg
     1981 cgccagcgca taccactggc aactgaaggg gtcaccgtcc gggagctgag gtgagtacgt
     2041 ctggcagttc gccgggatgc atgatgcaca ggcggtttgt ggtgcgggtg agggcgacgt
     2101 agagatcgtt gagaccgcgc ggggattcgg tcaggatcgc tgcggggtca acgagcacga
     2161 ccgcgtcgaa ttccagcccc ttgacctggg cgacagtgag cacggtgacc ggtgcctcga
     2221 ggtcgtcatc gctcgccgcg gggaccaggt tgcgaagctc ggccaccctc gcgtcggggc
     2281 cgagcaccgc catgcggccg tttcccaccg cggctgcctc ctcggcgacg agtgccggga
     2341 gctgttcggc tagcgcgcgg aactggacat agcgaggcag gacgccggtg tggcgaaccg
     2401 agcgcggcgg cgtgatgtcg acgtcgatag cggccagcac ccgatcggcc agctgcgcga
     2461 tctcggcggg attccggtag ttgaccgtga gctgttccag ccgccaccgc tgcgcgacgt
     2521 agggcccgag cacgtcctgc cacgatgccg cgccggaccg gttcccggtt tgggcaagat
     2581 ctccgaccac cgtcatcgag cggctggggc agcgccgcat gagcacccgc cacgccatcg
     2641 gagacagctc ttgggcctca tcgatgatga tgtgcccgta ggcccaggtc cggtcggccg
     2701 cggcgcgctc agcggtgctg tcgtagttgc gagttcgctg ccggtccgcc agccggtcgg
     2761 cgtcgatgag gtccgtggcg cgcagtagct caggatccag gtcttcatcg aggtccagga
     2821 tgtccagcac gccctgcgcg tactgcagct ccgctcgtag cgcggcggct tcccgggcag
     2881 cctcggcgct gccatcggaa ccgagcagct cggccgcctc gtccagcaac gggacatcgg
     2941 cgggggtcca cacctgatcg gggttggtgg cggggtcggg aaccggccgg cccagcaagt
     3001 cacactcggc ggactccagc agtcgatggg tggcgctggc caaccgctgc ggatcag
//
LOCUS       DASVXZ010000187         1975 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_200477, whole genome shotgun sequence.
ACCESSION   DASVXZ010000187 DASVXZ010000000
VERSION     DASVXZ010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200477"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            309..542
                     /locus_tag="VF788_03670"
     CDS             309..542
                     /locus_tag="VF788_03670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histone-like nucleoid-structuring protein Lsr2"
                     /protein_id="HEX8933290.1"
                     /translation="MAPTTIGGFIESARKFKGSKNSDGRRARSAEAAGNRQSREQTQA
                     VRKWARQHGHDISNRGRIPASIQQAFDQAHTAA"
     gene            complement(1536..1790)
                     /locus_tag="VF788_03675"
     CDS             complement(1536..1790)
                     /locus_tag="VF788_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933291.1"
                     /translation="MHASVVRGNTPVITVVIGSVKCRWPSALFELVEAATRIDVEGLA
                     RNNVGLPLPAISQVTAVDDQFGTHGLGTRGHCDNRASEAS"
BASE COUNT          391 a          651 c          601 g          332 t
ORIGIN      
        1 ccagggcagc ggctatcact ggtcgttcac ctcctccgag gtaaagtcgc agcgatgaca
       61 gcataggtcg cagccggcat cgcaccaacc gtaggacact gcgcagaccg caacggtggc
      121 gagttagcac ctggtgtgca cgttgtgata caacagaggt gccggggcgc aaggtgctca
      181 gtcgcgcggt aaccctagac atcgtggtct tcgaggagac aaccccacca tggcgcaaaa
      241 ggtaatcacc gagttcatcg acgacatcga cggatcagcc gccgtgcgga cattcacctt
      301 cgctgtcgat ggcaccaact accatcggcg gattcatcga aagcgcacgg aagttcaagg
      361 gcagcaaaaa cagcgacggt cgccgcgccc gtagcgccga ggccgcgggc aatcggcagt
      421 cccgcgagca aacccaagct gtgcgaaagt gggcccgcca acacggccac gacatcagca
      481 atcggggcag gatcccggcg tcgatccagc aggcattcga tcaggcgcac accgccgctt
      541 aatcgataac ccaacacccg aggtgagttg cggcggactg aacagcctgc ggcaactcac
      601 ctccacacca tccagatgac gcggggcaat acgcctgtga tcatcttgat cggcgacacc
      661 actcgccacg acggtggccg atcctggtcc tcgaactggt cgaagcgacc gtgacgacag
      721 ctccgttgga tcccccaagc accgatcggc agttcgggcg tccctacttt gtgccgacga
      781 tgcagcgggc cacgccggag tcgttacctt gccgtcttgt tcgtaggtgc tgaccctagc
      841 gatgacggct ttcgcgatcg gctcccgcgc cggttcgtcg acctgctcaa gcgccgcaac
      901 ggcgagcgag acgtgctcgc tgatcatctc cccgtactgc gcgggcgatc acgttacgag
      961 ttcgacctcg acgttccact cggtgacctc gcgcagcccg gcggcctcgt acagcgcact
     1021 gacacatccc gggaccgcgc acccgaacat cgtggacccg tccggacatg ccggtcacga
     1081 gcggggacat caggggttgc cgcgtctgag cctggggatt cgcggggaaa atcccaccaa
     1141 cttccggcat ggtgataaca cgcgagaatg cacgacgaaa ccctgggtaa ccgggggcgt
     1201 tggaccccca tcgctcacgg ggggacccga tgactggcac gacgctcacc accggaacac
     1261 cggtggtcta ccgcggttcg atcacccaat gtcgaggccc tgcgactgtt cttggtccct
     1321 gcgaatgcac gagctgcggt ggactcaacc gattggtaat catcacggcc ggcggtgagt
     1381 tgttgcagca tgtccgggct gagtcggtga gcgagcttca gtggacgcca gcgagcgaac
     1441 cgttggcttg ctgaggtcac ccctcgtagt ccggcactct ggcattcagc gatcggccca
     1501 cccgggctgg tcgcactcgc gggcctagaa gccactcagc tggcctcgga tgcccggttg
     1561 tcacagtgtc cacgggtacc gaggccgtgg gtgccgaact ggtcgtccac ggcggtgacc
     1621 tgcgatatcg ctggcagtgg tagcccgaca ttattccggg ccagcccttc gacatctatc
     1681 cttgtggccg cttcgaccag ttcgaagagc gcactcggcc accggcattt gacggagccg
     1741 atcaccacgg tgatcacagg agtattgcca cgcactacag aggcatgcac cacgggagca
     1801 ccctcagaag agtccttgac cggctccgtt cctacaggga tgacctgctg gtttctgggt
     1861 cacgccgggt ggatcagcgt cgccagcttg gcatcacggt cgtcgcctag tctcggtacc
     1921 cggagccgca accgcagacg actaccaccg tgaaccgccg agaaggcccc aacgg
//
LOCUS       DASVXZ010000188         2200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_111149, whole genome shotgun sequence.
ACCESSION   DASVXZ010000188 DASVXZ010000000
VERSION     DASVXZ010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111149"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VF788_03680"
     CDS             <1..265
                     /locus_tag="VF788_03680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933292.1"
                     /translation="QPEEPGRRRGNIRQRGSSLQVRFFAGRDPVTGREVYLTASIAGT
                     DKKARKRAEDKLAEFRTQVNKQLSIPSNRGGLVMRLRGCGAVS"
     gene            complement(231..551)
                     /locus_tag="VF788_03685"
     CDS             complement(231..551)
                     /locus_tag="VF788_03685"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933293.1"
                     /translation="MIFHSDRGSEYTAAAYQRACQSLGVTQSMGRVGSALDNAAAESL
                     NSTLKVEYIHRHHFRTRALARIKIAIWIVDFYNARRRHSTCGGLSPNDYEHLMTQLHN
                     PEAA"
     gene            complement(538..1119)
                     /locus_tag="VF788_03690"
     CDS             complement(538..1119)
                     /locus_tag="VF788_03690"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEX8933294.1"
                     /translation="MAAFITSQRTEHQVPHAITCRALGVSPAWYYKWRDRPPTPRQLR
                     RQQLAEAIGEIFTDSYGTYGSPRVALELRARGWRVSVNTVAKIMTEQGLAARIKRRRR
                     GLTKQGQRPAAPDLVGRNFSTDAPDRLWCGDLTEIDTDEGKLYLATVLDLYSRRLLGY
                     ATSAHHDADLAVASLQMAGRRYPGRHRRGRDLP"
     gene            complement(1122..1421)
                     /locus_tag="VF788_03695"
     CDS             complement(1122..1421)
                     /locus_tag="VF788_03695"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8933295.1"
                     /translation="MAQTRRKFDAQFRVGAVRIVTETGKPIAQVARDLGIKESTLGNW
                     VAKDRATRAGNGTGALSESEREELARLRRDNAELAMERDVLKRSVVLWVKEAMGR"
     gene            complement(1929..>2200)
                     /locus_tag="VF788_03700"
     CDS             complement(1929..>2200)
                     /locus_tag="VF788_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEX8933296.1"
                     /translation="GKRLKRLASDPVTTPVVQRIFHEYVMGIGIYALAQRLTSDGIPS
                     PSAYDPDRNTHRCGLAWSKSAVRCPSATSSTSMSDSCFRCLFHTW"
BASE COUNT          361 a          714 c          739 g          386 t
ORIGIN      
        1 ccagccagag gagcccggac gccggcgggg aaacatccgg cagcgcggca gctcgttgca
       61 ggttcgattc ttcgcgggga gagaccccgt gaccggccgg gaggtctacc tcaccgcgtc
      121 catcgctggc accgacaaga aggcgcgcaa gagggcggag gacaagctcg ccgagttccg
      181 tacccaggtg aacaagcagc tgtcaatccc ctcgaatcgt gggggtttag ttatgcggct
      241 tcggggttgt ggagctgtgt catgaggtgt tcgtagtcgt tgggtgagag tccgccgcag
      301 gtgctgtgtc ggcggcgggc gttgtagaag tcgacgatcc agattgcgat cttgatccgg
      361 gctagggcgc gggtgcggaa gtggtgccgg tggatgtatt cgaccttcag tgtggagttc
      421 aatgactcgg cggcggcgtt gtccagggcg gagccgaccc ggcccatgga ttgggtgacg
      481 cctaggctct ggcaggcgcg ctggtaggcc gctgcggtgt attcgctgcc gcgatcacta
      541 tggaagatca cgccctcgac ggtgccgccc cgggtagcgg cggccggcca tctgcagcga
      601 cgccacggcc aggtcggcgt cgtggtgagc tgaggtggcg tagccgagta gccggcggga
      661 gtacaggtcc agcaccgtgg cgaggtatag cttgccctcg tcggtgtcga tctcagtcag
      721 gtctccgcac cagagccggt cgggggcatc ggtgctgaag ttccggccga ccagatcggg
      781 agcggcgggg cgttgaccct gcttggtcaa cccgcgtcgg cgtcgtttaa tccgggccgc
      841 cagaccctgc tccgtcatga tcttcgcgac ggtgttgacc gacacccgcc atccccgtgc
      901 ccgcagctcc aaggccaccc gaggactgcc gtaggtgccg taggagtcag tgaagatctc
      961 accgatcgcc tcggcgagct gctggcggcg cagctggcgg ggtgtgggtg gccggtctcg
     1021 ccacttgtaa taccacgccg gcgacacccc cagtgcccgg caggtgatcg cgtggggaac
     1081 ctgatgctcg gtccgctggg aggtaatgaa ggccgccacg gctaccggcc catcgcctcc
     1141 ttgacccaga ggaccaccga gcgcttgagc acatcacgct ccatcgccag ctcggcgttg
     1201 tcgcgccgta gccgcgccag ctcctcgcgt tcgctctcag acaatgcacc ggtgccgttg
     1261 ccggcccgcg tggctcggtc cttggccacc cagtttccca gggtgctttc cttgatcccc
     1321 agatcccgag ccacctgggc gatcggcttg ccggtctcgg tgacgatccg caccgcccca
     1381 acccggaact gcgcgtcgaa cttacgtctg gtctgggcca ccacacccct tccgccggtc
     1441 caggtccagc caccgagcca atcctgcggg tccgcccctc ccagctcaag ggcgcctccg
     1501 gcgtcgctgc gcgatgccgc tgcgcggcac ccctgacctg cgagcctctg cggaccctcc
     1561 gggcaggttc acgggcaggc cacggcccgc ccttcaatca gctcgacaac tggaccctcc
     1621 atggtccggt ctccacggta agaggggaac ctcgtagtcg acgcggggcc gcatcccaat
     1681 cccgcgaagg cggccgaggg aaagcggctc aagcggttag cgccggaccc ggtcaccaca
     1741 cccgtggtac agcggatctt ccacgaatac gtgatgggta ttggtatcta tgccctggcg
     1801 cagcgtctga cgtctgatgg catcccgtcg ccgtcggcgt atgacccgga ccgcaacaaa
     1861 catcggtgtg gcctggtgtg gtccaagagc gcggtccgaa cgatcttggg caatccgcgc
     1921 tacaccggct accaggtatg gaacaaacaa cggaagcaag agtcgctcat cgatgtggag
     1981 gatgtcgcgc tcgggcatcg gaccgcgctc tttgaccatg ccaggccaca ccgatgtgtg
     2041 ttgcggtccg ggtcatacgc cgagggcgag gggatgccat cagaagtcag acgctgcgca
     2101 agggcataga taccgatacc catcacgtat tcgtggaaga tccgctggac cacgggggtg
     2161 gtgaccgggt ccgacgctaa ccgcttgagc cgtttgccct
//
LOCUS       DASVXZ010000189         1691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1086318, whole genome shotgun sequence.
ACCESSION   DASVXZ010000189 DASVXZ010000000
VERSION     DASVXZ010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1086318"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VF788_03705"
     CDS             complement(<1..219)
                     /locus_tag="VF788_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933297.1"
                     /translation="MGWAFQANIPILHVRHAERSVPPLTAGWGVHGWAGRWLVNGSRQ
                     GVVRIEIDPAARATVMGIPVRLTTLLVSV"
     gene            complement(1292..1588)
                     /locus_tag="VF788_03710"
     CDS             complement(1292..1588)
                     /locus_tag="VF788_03710"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX8933298.1"
                     /translation="MATLLDDEGVATALDRLTGWQRDGDTIVRTAELSSFPAAIEAVR
                     EVAEIAEARNHHPDIDIRWRTVTFRCSTHSKGGITDLDIELAEQIDRVLAGATG"
BASE COUNT          324 a          515 c          510 g          342 t
ORIGIN      
        1 aacgctgacc agtaacgttg tcaacctcac ggggataccc atgaccgttg ctcgggccgc
       61 ggggtcgatc tcgatccgaa cgacaccctg tctcgacccg ttcaccagcc accgaccagc
      121 ccaaccatgc actccccaac cggcggtgag tggcggcacg gatcgctcgg catgccggac
      181 atggagtatc gggatgttgg cctgaaatgc ccatcccatc tggacacgta actgctcagg
      241 cgcgacttca atcccagact cggcggggcc taggcccaag gttaccaaca agggcttgag
      301 cggcgcggcg tagttgatct caaaccacga tgaggccagg gtgtctcctt tcctcagctc
      361 tgatcacgac agtggccgct atcgcagtaa acacgatgaa cgtggtcacg gacgatacga
      421 aggcaggcgc gccccccagg acagtcggtc ccgccgtgac gtcgctaggt gggatgtcga
      481 tccagtgctg tgccggcaac ggacgccaat catgcctcga ccagctttga tgcaggcagg
      541 gaacgatcga cgtgcccgct cggcaacgac tgatacctga tcgaggtgaa cgggacactg
      601 atgtgcgtcg atttcaccgc ggcgaactac ggtggggtga tcgctgagta atccattgtg
      661 gtcttgggcg gggattagat cccacagagc tagaagtacg ccgccgccgg ctgaccaaca
      721 ccggcccggg tctgcgtcgg cttcataggc gggcagtgtt cccagcactg gatcggtcaa
      781 gagacaacca ctccgcagtg tgatggggtg ctctcccttg gctttgcgaa tccggatcga
      841 acaccttgcg caggaaggtt cctaggtcgg gctggtacgg atacactctg tacacgatga
      901 cggagagtcg cgctggaggt ggatcgggac cgattcaatg caaatcctga tgacctgtac
      961 aagatgttca tgccgtactt ccagaacccg ccgagggtct cgaacattga ggagaagaca
     1021 tgcacgaata cggcgtttca ctatttggca tcttgtactt actcatcggc gtggttgttg
     1081 cgctgactaa tggatatgcg atccatacta tcggcgagct actgtcgttc gtcttggcga
     1141 tcctgctctg gcctctcgta cttctcaacg taaacctgca cgtcgctgtt tgacatgctg
     1201 attggtccag cgcgccgagt tcgaccacag ggctgtccgg tcgcaactga cagctgtcgt
     1261 gtcgaactcg gcgcctgctg ggtggctgcg cttagcccgt tgcgccggcc agcacgcggt
     1321 cgatctgctc ggcgagttcg atgtcgaggt cggtgatacc gcccttggag tgggtgctac
     1381 agcgaaacgt cacggtgcgc cagcggatat cgatgtctgg gtggtgattg cgtgcctcag
     1441 cgatctcagc cacctcgcga accgcctcga tggcggcggg gaagctcgat agctccgcgg
     1501 tccggacgat cgtgtcacca tcgcgctgcc agccggtgag ccggtccagg gcagtcgcca
     1561 ccccctcatc gtccaacaat gtcgccatgc cgtctcctca cggtctcata gatgcttgtg
     1621 cacgcctgac gcccatcgaa gggtctcatg actgcgcgct ttgccgagcg caagccacgc
     1681 gcctcggtca c
//
LOCUS       DASVXZ010000190         5543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_828308, whole genome shotgun sequence.
ACCESSION   DASVXZ010000190 DASVXZ010000000
VERSION     DASVXZ010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5543
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828308"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1420)
                     /locus_tag="VF788_03715"
     CDS             complement(<1..1420)
                     /locus_tag="VF788_03715"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX8933299.1"
                     /translation="MTCASCAARIEKKLNRLEGVQASVNFATEKARVRYADGVIPEDL
                     VATVARTGYTAELPCDRSHASDSDIEDTEFRALRERLVGSAVLAVQVIAMSMAMMIPG
                     LRVPHNFEPLSMILTAPVVAWGAWPFHRAAWRNIRHGAATMDTLISMGVLAAFLWSCY
                     EWFSAGGFITNHEVGASNYQPHGQVYFEVAAGVTVFLLAGRYFEARSKGRAGAALRAL
                     LRLGASEVALLRAGQEIRIPIDGLTVGDEFMVRPGEKIATDGEVLEGSSDVDESTLTG
                     ESVPIEVSPGSYVTGGTVNASGRLRVRACRVGADTRLAQMARLVEEAQSGKAKVQRLA
                     DRVSAVFVPIVIALAVATLCIWLAIGADAGTAFADAVAVLIIACPCALGLATPTALLV
                     GTGRGAQLGILIKGPEVLESTRRVDTVLLDKTGTITAGTMTLVDVLPAAGEDPEEVLR
                     RTAAVEDASEHPVAAAVTSGARQ"
     gene            complement(1508..2347)
                     /locus_tag="VF788_03720"
     CDS             complement(1508..2347)
                     /locus_tag="VF788_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933300.1"
                     /translation="MPVLALLAGLAALFGFGISFGESFVSRAAPVPHDRDGRGIGDED
                     HSAGPGGLSVASQGYVLRPRATRFTAGEYENFRFNVFSSNGSPVTDFGQRGERRMDLF
                     VVRRDLTGYQHLYPIMEPDGTWTVPLELEEPGNYHAFAEFFPGTAKTPVTLGVDLDAP
                     GFVEPGPISKESTVAGIDGYSVTWTGNLIGGSVSRVWIHVMQDNLPVMDLDPVLWGGA
                     RLVILREGDLANLHVHPVGGPRLNTAIEFDVDVPTAGYYRMFLEFQHRGRLRTVEFTA
                     LAR"
     gene            complement(2450..2668)
                     /locus_tag="VF788_03725"
     CDS             complement(2450..2668)
                     /locus_tag="VF788_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-associated domain-containing
                     protein"
                     /protein_id="HEX8933301.1"
                     /translation="MGDTATVSEYIVTGMVCQHCVSAVTEEVGGISGVTDVQVDLDTG
                     RVCVTSNGPVDGAAVRAAINEAGYEISD"
     gene            complement(2707..2985)
                     /locus_tag="VF788_03730"
     CDS             complement(2707..2985)
                     /locus_tag="VF788_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEX8933302.1"
                     /translation="MASYTKDRDVYLNRLRRIEGQVRGLQRMVEQDQYCIDVLTQVSA
                     ATKALQSFALALLEEHMATCVVDAAADGADAEVKVKEAADAIARLVRS"
     gene            complement(3097..4170)
                     /locus_tag="VF788_03735"
     CDS             complement(3097..4170)
                     /locus_tag="VF788_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3048 domain-containing protein"
                     /protein_id="HEX8933303.1"
                     /translation="MNRRGQVLRLLALILLVYALPITLLSRSTSAPGYPSPAALPVSP
                     NAPDSSSASSRQIPHGSAPDLLPNEVPAPPSPPPVSPFTGLPTDLGAPVLGVKVDNAA
                     VARPQRGLEQADLVYVEPVEGGLSRLLAIYQSQVPPEVGPVRSTRASDVELLANFGRP
                     ALAYSGAAASVGALVARAPVLDVSALARPGDYRRDRRRQMPHNLYGDTNLLRQGGAPP
                     RDIGFRFGAAPSGGRPLETTGVTYSATAIGVQWLPAEARWVISMDGTPLTSASGPRPS
                     AATVVLQRVAVRDAGVRDAAGSPSPFAATVGSGDVVVLRDGLAFNGSWSRPTPEAITT
                     FTLPDGSPLTFAPGPVWVVLVPT"
     gene            4460..>5543
                     /locus_tag="VF788_03740"
     CDS             4460..>5543
                     /locus_tag="VF788_03740"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEX8933304.1"
                     /translation="MSHGLERVEPRRGLTALHPLQWTLWSERKIVVAYVLTVDFVAAG
                     LTAGTILATPVGSSDLFRFALLASGAFIHREAVRPIENLRERATSNGRLTDLTSLWIF
                     AAALSVPLPLVFAMTALVYLHAWYRDNSGRVYPQVFSAATMVLAPTAAVTVLELVQPT
                     EYPIIPHGPPGLIVLLGAATVYWLVSVVVAVAAVMMSDPLLTARQAVGDPAEQVVVAA
                     SLGLAIALAVMLAWEPWLIVVPLIIVFPLHRALLLPHFQQAARTDGKTGLLTAGFWRE
                     EACRELERARRLAEPLGVLMLDLDHFKAFNDRMGHLVGDQLLRAVADELRSETRPYDL
                     VGRFGGEEFVILLPGVGATQVEHIADR"
BASE COUNT         1018 a         1852 c         1717 g          956 t
ORIGIN      
        1 gctgccgtgc gccggaggtg actgcggccg cgacaggatg ctcggaggca tcctccacag
       61 ccgcggtccg gcgcagcacc tcctcggggt cctcgcccgc agcgggtagc acgtcgacca
      121 atgtcatggt gcctgcggtg atcgtgcccg tcttgtcgag tagcacggta tccacccgcc
      181 gagtggactc cagcacctct ggacctttga tgaggatgcc caactgcgca ccccgaccgg
      241 tgcccaccag cagcgcggtg ggagtggcca gaccgagggc gcacggacaa gcgatgatca
      301 gcaccgcaac cgcgtcggcg aatgcggttc cggcatccgc accgatcgcc agccaaatgc
      361 acagcgtggc caccgcgagc gcgatcacga taggtacgaa cactgctgag acccggtcgg
      421 ccagacgctg cactttggcc ttgccgcttt gcgcctcctc gaccaaccgc gccatctggg
      481 ccagccgagt gtccgcaccc acccggcagg cgcgcacccg aagccgaccg gaggcgttca
      541 ccgtcccgcc ggtgacgtat gaacctgggc tgacctcaat gggtaccgat tcaccagtga
      601 gcgtgctctc gtcgacgtcg gaagatcctt ccagcacttc cccgtccgta gcgatcttct
      661 cccccggccg aaccatgaac tcatcgccga ctgtcaaccc atcgatgggg atacgtatct
      721 cctggccggc ccgcagtaat gccacctccg aggcgccgag ccgcagcaac gctcgtaacg
      781 ccgcacctgc ccgccctttg gaacgtgcct cgaagtaacg accggccagg aggaataccg
      841 tgacaccagc ggcaacctcg aagtagacct ggccatgggg ctggtaattg gacgcaccga
      901 cctcgtgatt ggtgatgaag ccgcccgcag agaaccactc gtagcagctc cacaggaacg
      961 ccgccaaaac acccatcgag atcagcgtgt ccatggtggc ggcgccgtgg cggatattcc
     1021 gccaggccgc ccggtgaaac ggccacgctc cccaggccac caccggagcc gtgaggatca
     1081 tcgacagcgg ctcgaaattg tgcggcaccc gcaggcccgg aatcatcatc gccatcgaca
     1141 tcgcgatcac ctggacggcg agcacagcgc tacccacgag ccgttcccgc aacgcccgga
     1201 attcagtatc ctcgatatcc gagtcggacg catgggatcg atcgcaaggt agctcagctg
     1261 tgtagccggt gcgcgcaacg gtggctacga gatcctcggg aatgacaccg tcggcgtagc
     1321 ggactcgcgc tttctcggtg gcgaaattga cgctggcctg cactccctcg agccggttca
     1381 gcttcttctc gatgcgcgcc gcacaggacg cgcacgtcat accgctgata gccaactcga
     1441 cttggtgatt caggtcgtca aggccggtgg cggcggtagg gccggtctca tggacggtgg
     1501 acacgtctca cctcgccagc gcggtaaact caacggtccg caaccggcca cggtgctgga
     1561 attccaggaa catccggtag taaccagcag tcggcacgtc tacatcgaac tctatcgccg
     1621 tgttcaggcg aggtccccca acgggatgca catgcaggtt cgccaggtcg ccctcgcgca
     1681 ggatgaccaa ccgggcaccg ccccagagaa caggatcaag gtccatgacg ggcaggttgt
     1741 cctgcatcac atgtatccat acccgggaca ccgatccacc gatcagattc ccggtccagg
     1801 tcaccgaata gccgtcgatt cccgcaaccg tcgactcctt cgatatgggc cccggctcga
     1861 cgaaccccgg tgcatcaaga tcgacgccca atgtcaccgg tgtcttcgcg gtcccaggga
     1921 agaactcggc gaaagcatgg taattgccgg gctcctcgag ttccagcggc acggtccagg
     1981 tgccatcagg ttccatgatg gggtaaaggt gctggtagcc ggtgaggtcc cggcgaacca
     2041 caaacagatc catccgccgc tcaccgcgct gcccgaagtc tgtcaccggc gatccgttgc
     2101 ttgagaagac gttgaaccgg aagttctcgt attctcctgc ggtgaagcgg gtggccctgg
     2161 gacgcagcac gtaaccctgg ctggccaccg acaggccacc agggcccgcg gaatgatctt
     2221 catcaccgat cccgcgccca tcccgatcat gcggtaccgg cgcagcccga ctgacgaacg
     2281 actccccgaa actgatcccg aagccaaaaa gcgccgccaa accggcgagc aacgccagca
     2341 ctggcacggg ggttcgcaac cgttgcgccc ggagtcttcc ggcgtgaaac atgtctagcc
     2401 agacatcggg tctgggatcg gcaagtgtga ggtccgcgag tgtgtgagct cagtcagaga
     2461 tctcataacc ggcctcgttg atcgcggcac ggaccgcggc gccgtccact ggcccattgc
     2521 tcgtcacgca aacccggccg gtgtccaggt cgacctgcac atcggtgacc ccactgattc
     2581 caccgacctc ttccgtcacc gccgaaacac agtgctggca gaccattccc gtgacgatgt
     2641 actcgctgac tgtggcggta tctcccatgt cgtgcctccc cgggcttgtg gttgctgctt
     2701 gatgcgtcac gaacgcacca ggcgggcaat cgcgtcggct gcttctttga ccttgacctc
     2761 ggcatcggca ccatccgccg ctgcgtcgac cacacaggtc gccatatgtt cttcgagcaa
     2821 agccagcgca aaggattgca gtgctttggt ggcggccgag acttgggtca gcacatcaat
     2881 gcagtactgg tcttgctcca ccatccgctg cagcccacgg acctggcctt cgatccggcg
     2941 taaccggttg aggtatacgt cccggtcctt ggtgtagctc gccaccgcat cgtcctctct
     3001 cgaccgatcc ctgagtgata cccccgtgag gtaccatata ccctcggcgg gtatcttccc
     3061 gttgactctc ggcggtgggt agccaccatc tgattactac gtcgggacca gtaccaccca
     3121 gaccgggccg ggcgcgaaag tcagcggtga tccgtccggc aaagtgaaag tagtgattgc
     3181 ctcgggggtt ggacgtgacc agctaccgtt gaaagccaac ccgtcacgaa gcacgaccac
     3241 atcgccggag cccactgtcg ccgcaaacgg tgacggtgat cccgccgcat cgcggactcc
     3301 agcgtcgcga accgccaccc gctgcaacac cacggttgct gcgctggggc ggggcccgga
     3361 ggccgaggtc agcggcgtgc catccatgga gatcacccat cgggcctccg ccggcagcca
     3421 ttgcaccccg atcgcggtcg ccgagtaggt gacgccagtc gtctccaatg ggcgaccacc
     3481 ggagggggcg gccccgaagc ggaagccgat gtcccgcggt ggcgcaccgc cttggcgtag
     3541 caggttggta tcgccataga ggttgtgtgg catctgcctt cgccggtccc ggcgataatc
     3601 gccgggacgc gccagggcgg acacatcgag caccggcgct ctcgccacca gcgcgccgac
     3661 cgaagccgcc gcaccggagt acgcgagcgc gggccggccg aagttcgcca gcagttccac
     3721 gtcagacgct cgtgtactgc gcaccgggcc gacttccggc ggcacctgcg attgatatat
     3781 tgcaagcagc cgactcagac cgccttcgac cggctcgacg tagaccagat ccgcctgctc
     3841 aagcccacgt tgcgggcggg cgaccgcagc attgtccacc ttgacaccga gtaccggcgc
     3901 gccgagatcg gtgggcaagc cggtgaacgg cgagaccggt ggtgggctgg gcggagctgg
     3961 tacctcattg ggcaacagat cgggcgccga gccgtgcgga atctgacggg acgacgccga
     4021 cgatgagtcg ggcgcattgg gcgaaacggg tagggctgct ggtgatgggt acccgggagc
     4081 gctggtggat cgggacagca gggtgatggg cagcgcgtag accaacagga tcagggccag
     4141 caagcgcagc acctgtcccc gtcggttcat ccccgccacc acctcgccca aacatcatgc
     4201 aacgttagtg acacttcata ccagcggtga tcgccgcggg tgaatcacgc cgcgccgaaa
     4261 cagtcgccgc aaggggccaa gctggctact gtccgtaaaa tactcccgcc tgcgtggtca
     4321 cggctccgga gccatcccat taccgagggt aacgaacaat tccctcgagc ggcacgccac
     4381 tcggaggatg acaaagagtc gctcgccgat tactctcagg gagatagctc aacgtcacta
     4441 tcgggggcac ccagtgagtg tgagccatgg gcttgagcgt gtcgaaccga ggcgcggcct
     4501 gacggctctg cacccactgc aatggacgct gtggagcgag cggaagatcg tcgtcgctta
     4561 cgttctgacc gtggatttcg tggcggcagg gttgactgct gggacgatct tggcaacacc
     4621 tgtcggttct agcgatttgt tccggtttgc attactggcc tccggggcct tcatccaccg
     4681 cgaagcagtt cgcccgatcg agaacctccg ggagcgggcg accagcaatg gtcggctgac
     4741 cgatctcacc tccttgtgga tcttcgcggc ggcgttgtcg gtgccactac cgctggtgtt
     4801 cgcaatgacc gcgctggtct acctgcacgc gtggtaccgg gacaactccg gcagggtgta
     4861 cccccaggtg ttctccgcgg ccacgatggt gcttgcaccc actgcggccg tcactgttct
     4921 ggaactggtc cagcccacgg aatacccgat catcccgcac ggtccgccgg gattgatcgt
     4981 cttgctcgga gccgcgacgg tgtattggct ggtcagtgtc gtcgtggcgg tcgccgccgt
     5041 gatgatgtcc gatccactat tgacggcccg ccaggccgtg ggcgatccgg ccgagcaggt
     5101 tgttgtggca gcgtcgctcg ggctggcaat cgcgctcgcc gtaatgctgg cctgggaacc
     5161 gtggctgatc gttgtcccct tgatcatcgt atttccactg caccgggccc tactactgcc
     5221 gcactttcag caagccgccc gcaccgacgg caagacgggc ctgctcacgg ccggcttttg
     5281 gcgtgaggag gcttgccggg agctcgagcg ggcccgccgg ctcgccgagc cgctcggggt
     5341 gctgatgctg gacttggatc atttcaaggc gttcaacgac cggatggggc acctcgtcgg
     5401 tgatcagcta ctccgcgctg tggctgacga gctccgctct gaaacccggc cttacgacct
     5461 ggtcgggcgg ttcgggggcg aagaattcgt gatcctgctg ccgggtgtcg gagccaccca
     5521 ggtcgagcac atcgcagacc gga
//
LOCUS       DASVXZ010000191         3051 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1186793, whole genome shotgun sequence.
ACCESSION   DASVXZ010000191 DASVXZ010000000
VERSION     DASVXZ010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1186793"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..832
                     /locus_tag="VF788_03745"
     CDS             <1..832
                     /locus_tag="VF788_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MazG family protein"
                     /protein_id="HEX8933305.1"
                     /translation="QPVGEAVRGLLLTMDSSNGAAARWVASGAVVLHIPEPVGTALLD
                     AAAVMDRLRSPGGCPWDAQQTHRSLMPYLIEEAYELYQALEDSDTDAVREELGDVLLQ
                     VLFHARVAQEMPGGFDIDGVAGDLVTKLVTRHPHVFAGSEEVSTAADQELRWEQLKRA
                     EKRRESSIDGVALGQPAVALVAKLVSRAIKAGLPGDLLPSIDDVPRADGDTGASLFAL
                     SAVARLAGEDPEAALRSAALRFADDVRAAERSARAAGLDSGRLTTQQWREYWPTAPDP
                     "
     gene            986..1858
                     /locus_tag="VF788_03750"
     CDS             986..1858
                     /locus_tag="VF788_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HEX8933306.1"
                     /translation="MPRMSHYLLRGVLSGGALACAGLVLAGLSSVAAPLPDRGLAAPA
                     PAALAAPAALPDVAEPAAQPVAGTAPAQPTDQAGRQTVNLPVQIPEPEKTNPANGPQV
                     AFADWATKMARVTDIPQRALEAYANAHAIMAASHPNCRITWVTLAAISAVESKHGGFQ
                     GRTLEPDGRPSSPIIGIPLNGAPGVKAIADTDNGILDGDKIWDHAVGPFQFIPSTWAK
                     WRADGNRDGLTDPQNIDDASLAAAQYLCADNRNLSTGDGWLRAILSYNESLEYAQEVY
                     GFAQGYARSAKGVT"
     gene            complement(1867..2256)
                     /locus_tag="VF788_03755"
     CDS             complement(1867..2256)
                     /locus_tag="VF788_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8933307.1"
                     /translation="MTMTAADRPPDVVEQFRLAESLVSERRPLEALRELAPVLDAEPD
                     APSVQLLAGRAYLQSAQLQRAEEAFLRVVEQNPSDHYARFALGRTLQRQSRLEEARAQ
                     LAMAVAMNPTPDYQEALNEVRMRIAGR"
     gene            2411..>3051
                     /gene="eno"
                     /locus_tag="VF788_03760"
     CDS             2411..>3051
                     /gene="eno"
                     /locus_tag="VF788_03760"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944223.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEX8933308.1"
                     /translation="MAVIEEVGAREILDSRGNPTVEVEIALDDGTLARAAVPSGASTG
                     QHEAVELRDGDPERFGGKGVGRAVAAVLDEIGPELIGIEAIEQRIVDQKLLDLDGTPD
                     KSRLGVNAILGVSLAVAKAAAESSGLELFRYVGGVNAHVLPVPMLNILNGGAHADTGV
                     DVQEFMIAPIGAESFSEALRWGAEVYHALKSVLKANGLPTGLGDEGGFAPDLPA"
BASE COUNT          498 a          982 c         1032 g          539 t
ORIGIN      
        1 gcaacccgtc ggtgaggccg tgcgcgggct cctgctcacg atggactcga gcaacggcgc
       61 ggcggctcgc tgggtggcct ccggcgcggt cgtactgcac atcccggaac cggtaggaac
      121 cgcgttgctg gacgcggctg cggtgatgga ccggttgcgt tccccgggtg gctgcccctg
      181 ggacgcccag cagactcacc gctcactgat gccgtacctc atcgaggagg cctacgagct
      241 ctaccaagcg cttgaggaca gcgacaccga tgcggtccgc gaggagctcg gtgatgtcct
      301 gctgcaggtg ctcttccacg cccgggttgc ccaggaaatg cccggaggtt tcgacatcga
      361 cggcgtggcc ggcgacctgg tgaccaagct cgtcaccagg cacccgcacg tcttcgcggg
      421 cagcgaggag gtgagcaccg ccgccgacca ggaactccga tgggagcaac tcaagcgcgc
      481 cgagaagcgt cgcgagtcca gcatcgacgg ggtcgcgctg ggtcagcccg ccgtcgcgct
      541 ggtggccaag ctggtctccc gggcgatcaa ggcggggctt ccgggtgacc tgctgcccag
      601 tatcgatgac gtaccccggg ccgatggtga caccggcgcg tcgttgttcg cgctgtccgc
      661 ggtggcgagg ctagccgggg aggatcccga agcggcgctg cgcagcgccg cgctgcggtt
      721 cgccgacgac gtgcgggccg ccgagcgctc cgcccgagcc gccgggttgg actccggtcg
      781 gctcaccacc caacagtggc gggagtattg gccgacagcg cctgacccgt gagtggcgat
      841 acgagcctga gctcgtatcg ccactcacgg gctgctggcg tatctccgca gcgtgggcct
      901 cgttgatctg tcgatgagcg gtgacgagcg agccggtgcg cgaaccgggc gaatcggaca
      961 gtcaggcaag gcatggtttg gtcggatgcc ccgaatgtcg cactacctgt tgcggggagt
     1021 gttgtccggt ggcgcgttgg cctgtgctgg cttggtgctc gccggtctga gctcggtagc
     1081 cgctccgcta cccgaccgcg gactggccgc tccagcgcct gcggcgctgg ccgcgcccgc
     1141 tgcgttgccg gatgtggcgg agcccgccgc ccagcccgtt gccgggaccg cgcctgctca
     1201 gccgaccgat caagcgggcc gtcagaccgt caacctcccg gtgcagatcc ctgaacccga
     1261 gaagacgaat ccggccaacg ggccgcaagt ggcattcgct gattgggcta ccaagatggc
     1321 ccgcgtcacg gacatcccgc agcgggcgct ggaggcctac gcaaacgctc acgcaatcat
     1381 ggcggcctct catcccaact gccgtatcac ctgggtgacg ctggccgcaa tctcggctgt
     1441 cgaatccaag cacggtggtt tccagggtcg cactctcgaa cccgatggtc gtccgtcctc
     1501 accaattatc gggataccgc tgaatggcgc acccggcgtc aaggccatcg cagacaccga
     1561 taatggtata ctcgacggtg ataagatttg ggatcacgct gttgggcctt tccagttcat
     1621 tccgtctacc tgggccaagt ggcgtgccga tggtaaccgc gacggattaa ctgatccgca
     1681 gaatatcgat gatgcttcgc tggccgcagc ccagtatctg tgtgcggaca atcgcaatct
     1741 gagtaccggt gacggctggt tgcgggcaat cttgtcctac aacgagtctc tggagtacgc
     1801 gcaggaggta tacggtttcg cccagggcta cgctcgtagc gccaaaggcg ttacctgatc
     1861 gatcctctac cgtccggcta tccgcatccg tacctcgttc agcgcttcct ggtagtccgg
     1921 agtgggattc attgccaccg ccatcgccag ctgtgctcta gcctcctcga gtcggctttg
     1981 ccgctgcaag gtccggccga gagcgaagcg cgcgtagtga tcggaagggt tctgctccac
     2041 cacccggaga aaagcctcct cggcacgctg caactgcgcc gattgcaggt aggctcgccc
     2101 ggccagtaac tgcacactcg gcgcatcggg ttcagcatcg agcaccggag ccagctctcg
     2161 gagggcttcg agcgggcgtc gttcggagac cagcgactct gcgagcctga actgctcgac
     2221 gacgtccggg gggcggtcgg cggctgtcat ggtcatgccc acggtacgcg gagacgcgtt
     2281 gttgcacgag tgccgacacc cgacgccagg tacgtgatct ggactactcg atcaacggcg
     2341 cgcgcctccg accgagtggc gagcaccgtg gttaccctgt tctcacccac tgccgacgag
     2401 gagcgtatct gtggctgtca tcgaggaggt cggagcccgc gagattctgg actcgcgggg
     2461 taacccgact gtagaggttg agatcgccct tgatgacggc acgttggctc gcgccgccgt
     2521 gccctccggt gcgtcgaccg ggcagcacga ggcggtggag ctgcgtgatg gtgatcccga
     2581 gcgcttcggc ggcaaaggtg tgggacgcgc ggtcgcggcg gtgctggatg agatcggacc
     2641 agaactcatc ggcatagagg cgatcgagca gcgaatagtg gaccagaagc tgctcgacct
     2701 ggatggcacg cccgacaagt cgcgcctggg tgtcaacgcc atcctcgggg tttccctcgc
     2761 ggtggccaag gcggccgccg agtccagcgg tttggagctg ttccgctacg tcggtggcgt
     2821 gaacgcacat gtcctgccgg tgccgatgct caacatcctc aatggcggcg ctcatgccga
     2881 caccggagtc gatgttcagg aattcatgat cgcacccatc ggtgcggaat ctttcagcga
     2941 ggcgttgcgc tggggtgcgg aggtgtacca cgcgctgaag tcggtgctca aggccaacgg
     3001 gctacccact ggactcggtg acgagggcgg cttcgccccc gaccttccgg c
//
LOCUS       DASVXZ010000192         1616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1724186, whole genome shotgun sequence.
ACCESSION   DASVXZ010000192 DASVXZ010000000
VERSION     DASVXZ010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1724186"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..>1616
                     /gene="mdoH"
                     /locus_tag="VF788_03765"
     CDS             19..>1616
                     /gene="mdoH"
                     /locus_tag="VF788_03765"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF003962.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HEX8933309.1"
                     /translation="MVLLLAAYRELLLGAGLSGTGLTAVLLLFVPFGLFLAIGMTTWI
                     LGVVASARQRLPAALQWPVECSVKGLSVQTAIVFPIKNEDTAQVFANVATVREELREI
                     GADHLFDIYVVSNSDDPNCWVEEELAWHTVSRKSNRVFYWRRHRKEGRKPANIAEFCE
                     RWGSRYEYMVPFDADSLMSANTLTTLVHLMECNPQTALMQTSTDQVNGQTLFARLQQF
                     DGLDNGRLVSWGERVWQGPASTYYGHNAIIRIAPFMEHCGLPRLPGPPPFGGDLISHD
                     YVEAALLRRAGWDVWLVPELVESYEECPATLEEFFRRDRRWRQGDITNLQLLATPKLP
                     LTGRVRFLVTALRGLSPPLLLILVGLIIGLADSPAIAASAIAIPVLIWDFSCRMGWAG
                     VPVVSFGLSVYTRSINQDGLPVLCRFCSRILVQVLWFVTVPIRLLTYVSFVVGFACGR
                     DVGWTTHRRTGHRSTLNHSIRAYWWHVLFGAAATVVLILTDSWALEWLAPVLLAWILT
                     VPLTLAFDSRRIGLLARRAGVLLTP"
BASE COUNT          267 a          482 c          510 g          357 t
ORIGIN      
        1 gtggggtggc ctcttggtgt ggtcctgttg ctcgccgcgt accgcgagct gctgctgggc
       61 gctggtctgt ccgggacggg actgaccgct gtgttgttgc tgttcgttcc gtttgggcta
      121 ttcctggcca ttggcatgac cacgtggatt cttggcgttg tggcgtcggc cagacaacgc
      181 ctcccggcgg cattgcaatg gccggtcgag tgctcggtca agggcctgag cgtgcagacc
      241 gccattgtct tcccgatcaa gaacgaggac accgctcagg tattcgccaa tgtggcgacc
      301 gtgcgcgagg aactccggga aatcggagcg gatcatcttt tcgacatata tgtcgtcagc
      361 aactccgatg atccgaactg ctgggtcgaa gaggagctgg cctggcatac cgtctcccgg
      421 aagtccaacc gggtctttta ttggcggcgg caccgaaaag agggtcggaa gcccgcgaac
      481 atcgccgagt tctgcgagcg atggggcagt cgatacgagt acatggtgcc tttcgacgcc
      541 gacagcctga tgtcggctaa cactctgacc accctggtcc acctgatgga gtgcaatcct
      601 cagacggcgc tcatgcagac ctcgaccgac caagtcaacg ggcagacatt gttcgctcgc
      661 cttcagcaat tcgatgggtt ggacaatgga aggctcgtgt cgtggggaga gcgtgtctgg
      721 caggggcccg cgagcacgta ctacggacat aacgcgatca tccggatcgc gcccttcatg
      781 gagcactgtg gactgccacg actgcccggg cctcctccct tcggcggaga cctcatcagc
      841 cacgattacg tcgaagcagc cttgctgcgc cgcgcgggct gggacgtgtg gttagtgccc
      901 gaactggtgg aatcctacga ggaatgcccg gcaacgctcg aggagttctt tcggcgcgat
      961 cggcgctggc gccaggggga catcaccaat ctccaactgc tggccacgcc gaaactcccg
     1021 ctgaccggcc gagttcgttt cctggtgacc gcgctgcggg gcttgtcgcc tccccttctg
     1081 ctcatccttg tgggcctgat catcggctta gccgactcac cggcgatcgc cgcgtcggcg
     1141 atcgcaattc cggttctgat atgggatttc tcctgccgca tgggatgggc cggcgttccc
     1201 gtcgttagtt ttggactctc ggtctacacc cggtcgataa accaagacgg tctgccagta
     1261 ctgtgtaggt tctgcagccg gatcttggtt caggttctct ggtttgtgac cgtgccgata
     1321 cggttgctca cttacgtcag cttcgtggtg gggtttgcct gcgggcggga cgtggggtgg
     1381 acaacccacc ggcggaccgg ccatcggtcc acgctcaatc acagcatacg agcctactgg
     1441 tggcacgtcc tctttggagc ggctgccacg gtggtactga tactgaccga ttcgtgggca
     1501 ctagagtggc tggccccggt tttgctagcc tggattctca ccgttccatt aacactcgcg
     1561 ttcgattcac ggcgcatcgg cctattggcc cgacgggcgg gagtgttact aacgcc
//
LOCUS       DASVXZ010000193         7417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_548374, whole genome shotgun sequence.
ACCESSION   DASVXZ010000193 DASVXZ010000000
VERSION     DASVXZ010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7417
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548374"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..1106)
                     /locus_tag="VF788_03770"
     CDS             complement(93..1106)
                     /locus_tag="VF788_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEX8933310.1"
                     /translation="MRAAVLRGPRDVVIEERPIPRPGPGEVVVRVRAVGVCGSDTHYY
                     EHGRIGRFVVEAPLVLGHEAAGEVTDLGSGVTRLVVGERVSIEPGVPDLTCGQCLAGR
                     YNLCPNMRFFGTPPVDGAFAEYVVVHEAFAHPVPSSVGDDAAALLEPLSVGVWACMKA
                     RVTAGSRVLITGAGPIGLVSVAAALAFGAIEVVVSDVNPVRLALAKELGATTVIDARE
                     ASVTDLHRPPEVLLECSGHPPAIGQGIRALDRAGRAVLVGMGGDEILLPLSVIQEREL
                     EVTGTFRYAGTWPRAIALIASGRIDLDRLVTGTYRLDQAEEALTAGRRDQHSVKVVVH
                     PQT"
     gene            complement(1103..1909)
                     /locus_tag="VF788_03775"
     CDS             complement(1103..1909)
                     /locus_tag="VF788_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEX8933311.1"
                     /translation="MILGMVAWLIGILFVLPVLWMLLTSLHSEADAATNPPSIAAPLT
                     LQGYQEFFGASSGASPWPPLLNSVTASVLSTVLVLVFAIPAAYALSIRPVRKWTDVLF
                     FFLSTKMLPVVAGLLPIYLFAQAAGLLDNIWLLIVLYTSMNLPIAVWMMRSFLAEVPV
                     EMLEAAAMDGAGLIRTLREIVAPVVLPGIAATSLICFIFSWNELLFARVLTGTVAQTA
                     PVFLTGFVTSQGLFLAKVCAAALVVSLPVIIAGFAAQDKLVQGLSLGAVK"
     gene            complement(1993..2961)
                     /locus_tag="VF788_03780"
     CDS             complement(1993..2961)
                     /locus_tag="VF788_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEX8933312.1"
                     /translation="MSVALESAPRSGEGSGSSKRGADVLRRSADWARRAPLLPALIFT
                     IVVTQLPFVVTLIVSFMDWNAYYPDERGFAGLTNYKRVLTDVNMRDAILTTVLLTVTV
                     VLVSLILGLVIALLLDRKFIGRGAVRTMMITPFLVVPVAAALLWKHALYNPEYGLLNG
                     TITAVWRLFGSDHPPQPDWISNLPLVSVETALIWQWTPFMMLILLAGLQGRPLDVVEA
                     ARIDGAGNWQIFRYMTFPHLRQYLELGALLGSIYIVQNFDAVFTITSGGLGTANLPYT
                     IYQTFYQAHDYGRASATGVVVVIGTIIIATFALRTVSSLFREETSR"
     gene            complement(2991..4355)
                     /locus_tag="VF788_03785"
     CDS             complement(2991..4355)
                     /locus_tag="VF788_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEX8933313.1"
                     /translation="MRRRVRSTLAVVTATLALVVSGCAGWGGGAGGGGPNSINVLMVN
                     NPQMVDLQQLTAKHFTKDTGITVNFTVLPENDVRDKISQEFSSQAGQYDVATLSNFEI
                     PIYAKSRWIAPLDRYVAADPTFDQADILAPMTTSLTAEDGKLYGEPFYGESSFLMYRK
                     DVLEAKGIGMPVKPTWPQVADIAAKVDHAEPGMAGICLRGQPGWGQLFAPLTTVVNTF
                     GGTWFTKDWQPQVNGAAFRKATQFYVDLVRKHGEAGAPQAGYTECLNDLIQGNAAMWY
                     DATSAAGSLEAANSPVKGKIGYALAPVVETASSGWLYAWSWSIQQASAKKGNAWKFIS
                     WASSKKYEELVGTELGWSRVPAGKRASTYQNPAYLQQASAFAEPTRSAIENADPRNPG
                     VQPRPALGIQFVDIPEFPDLGTQVSQGVSSAIAGQITVDAALDRGQQLADDVAERYRS
                     REPR"
     gene            4514..5464
                     /locus_tag="VF788_03790"
     CDS             4514..5464
                     /locus_tag="VF788_03790"
                     /inference="COORDINATES: protein motif:HMM:NF016114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEX8933314.1"
                     /translation="MADQVGGPAQVVLTASVARRYYLDGRSKVEIAEEFGLSRFKVAR
                     LIDAARDSGLVRIEIRHQGVIDVDLSAHVQDRFGLQHAIIVDTPDDHMESLRQHLGRA
                     AAELLSEVITPRDVLGLAWARSVSAMAKALPRLPGIPVVQLTGALSLPNDDDCSVDAV
                     RDVARASGGRAYLFYAPFTVPDATTARALRQQPEVARAFGQLPSVTKAVAGVGLWECG
                     QSTLYDAAEERDRRALRRLGVCADISGVFVSADGEAVQTDLAERMIGISAEQMRAIPE
                     VIAIPYGTAKAPAVRAALRSGLVGGLVTHTALAQALLDNG"
     gene            5817..6215
                     /locus_tag="VF788_03795"
                     /pseudo
     CDS             5817..6215
                     /locus_tag="VF788_03795"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6533..6605)
                     /locus_tag="VF788_03800"
     tRNA            complement(6533..6605)
                     /locus_tag="VF788_03800"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6570..6572),aa:Thr,seq:tgt)
     gene            6740..>7417
                     /locus_tag="VF788_03805"
     CDS             6740..>7417
                     /locus_tag="VF788_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HEX8933315.1"
                     /translation="MTDGATPATTEADFVVVANRLPVDLERLPDGTQRWKSSPGGLVI
                     ALEPFLRSHRGAWVGWPGVPDLEAEPIADGDITLHPVTLSRTELTDYYEGFSNATLWP
                     LYHDAVAPPAFHRHWWNAYVEVNERFAEATAKVAGDGATVWVQDYQLQLVPRMLRTLR
                     PDLRIGFFLHIPFPPVELFMQLPWRTELVRGLLGADLVGFQLPGGAHNFLFLARRLAG
                     MSATRSAV"
BASE COUNT         1301 a         2386 c         2487 g         1243 t
ORIGIN      
        1 ccgcaggccg ctcggcgccc ggatagatgc gacttgcctt gtcgtaggtg acggatgcca
       61 tcgggtctcc ttgagtcagc gagatgggcg ggtcaggtct gggggtggac cacgaccttg
      121 accgagtgct ggtcgcgccg gccagccgtc agcgcctctt ccgcctggtc gagccggtag
      181 gtgccggtga ccaggcgatc taggtcgatc cggcccgacg cgatgagcgc gatcgccctg
      241 ggccaggttc cggcgtagcg gaacgtgccg gtgacctcga gctctcgctc ctggatcacg
      301 gatagcggca gcagaatctc gtcaccaccc atgccgacga gcaccgcgcg accagcgcgg
      361 tcgagcgcgc ggatcccctg cccgatcgct ggggggtgcc cggagcactc gagaagcacc
      421 tcgggtggcc ggtgcaggtc ggtgacacta gcctcacgcg cgtcgatcac cgtcgtggcg
      481 cccagttcct tcgcgagagc gagccgtacc gggttgacgt cggacacgac gacctcaatc
      541 gctccgaagg cgagcgccgc cgcaacgctg acgagcccga tcggccccgc gccggtgatg
      601 agaacccggg agccagcggt gacccgggcc ttcatacatg cccagacgcc gaccgagagg
      661 ggctcgagca gggcggcggc gtcatcgccc acgctggagg gcaccgggtg ggcgaaggcc
      721 tcatgcacga cgacgtactc ggcgaacgcg ccgtcaacgg gcggggtccc gaagaagcgc
      781 atgttcgggc agaggttgta tcgcccggcc aggcattgcc cgcaggtcag gtccggtacc
      841 ccaggctcga tggacacgcg ttcgcccacg accaacctcg tgaccccgga tccgagatcc
      901 gtcacctcgc ctgcggcctc gtggcccaac accagcgggg cctcgacgac gaaacgcccg
      961 atgcgcccgt gctcgtagta gtgagtgtcg gacccgcaca ccccgacggc gcggacccgg
     1021 acgacgacct ctcccggacc tggtcgggga atgggtcgct cctcgatgac gacgtcccgc
     1081 ggtccgcgta gtacagctgc tctcatttga cggcgccgag ggacaggccc tggacgagtt
     1141 tgtcctgggc cgcgaacccg gcgatgatca ccggcaggga caccacgagg gccgcggcgc
     1201 agaccttcgc gaggaacaga ccctggctgg tcacgaagcc ggtgaggaac accggtgcgg
     1261 tctgtgcgac ggtcccggtg aggacccggg cgaagagtag ttcgttccag gagaagatga
     1321 agcagatcag ggacgtggcg gcgatcccgg gcaggacaac cggggccacg atctcccgca
     1381 gggtccggat caggcccgca ccgtccatcg cggcggcctc gagcatctcg accgggacct
     1441 cggcgaggaa cgagcgcatc atccagaccg cgatcggcag gttcatcgag gtatacagca
     1501 cgatgagcag ccagatgttg tccagcagcc cggctgcctg ggcgaacagg tagatgggca
     1561 gcagacctgc cacgaccggc agcatcttgg tggacaggaa gaagaacagg acgtcggtcc
     1621 acttccggac gggtcggata gacagggcgt aggccgcggg gatggcgaac accagcacca
     1681 gcacagtgga cagcacgctg gccgtcaccg agttgagcag cgggggccag gggctggcgc
     1741 cgctggacgc accgaagaac tcctggtagc cctgcagggt cagcggtgcc gcgatcgacg
     1801 gcgggttggt ggctgcgtcc gcctcggagt gcaaggacgt cagcagcatc cacaacaccg
     1861 gcagcacgaa caggatgccg atcagccagg caaccatccc gaggatcatc ccgctgcgcg
     1921 gtggccgggt ccggcgtggc gcgccctcgg tcgtgcggct cgcgggcacc ggtgcggtgt
     1981 cggtgatgga ggtcatcggg aggtctcctc acggaacagc gacgacacgg tccgcagcgc
     2041 gaaggtggcg atgatgatgg tgccgatcac cacgacgacg ccggtggcgg aggcccggcc
     2101 gtagtcgtgg gcctggtaga aggtctggta gatcgtgtag ggaaggttgg cagtgcccag
     2161 cccgccggag gtgatggtga agactgcgtc gaagttctgc acgatgtaga tcgaccccag
     2221 cagcgcgccg agctcgaggt actggcgcag gtgggggaag gtcatgtagc ggaagatctg
     2281 ccagttgccg gcaccgtcga tacgcgcggc ttcgacgacg tccaggggtc ggccctggag
     2341 gccggcgagc aggatgagca tcatgaacgg ggtccactgc cagatcaggg ctgtctcgac
     2401 ggagaccagc ggcaggttgg agatccagtc cggctgcggt gggtgatcgg agccgaacag
     2461 ccgccacacc gcggtgatcg tgccgttgag cagcccgtac tccgggttgt agagggcgtg
     2521 cttccacaac agcgcagcgg ccaccggaac gacgagaaac ggcgtgatca tcatggtccg
     2581 cacggcgccg cgcccgatga acttccggtc cagcagcagc gcgatcacca agccgaggat
     2641 caggctcacg agcaccaccg tcacggtgag cagcaccgtg gtgaggatcg catcgcgcat
     2701 gttgacgtcg gtcaacaccc gcttgtagtt ggtgagaccg gcgaacccgc gctcgtccgg
     2761 gtagtaggca ttccagtcca tgaacgagac gatcagggtt accacgaacg gaagctgggt
     2821 gaccacgatc gtgaagatga gggcgggcag caggggcgcc ctgcgggccc aatccgccga
     2881 gcgccgcagc acatctgcac ctcgcttgct cgacccgcta ccctccccgc ttcggggagc
     2941 ggactcgaga gcgacactca tctggccgcc tcctgtagtt ctcggcttgg tcaccgcggc
     3001 tcccgggagc ggtagcgctc ggccacgtcg tcggcaagct gctgcccgcg gtccagcgcc
     3061 gcgtcaacgg tgatctggcc ggcgatcgca gagctgaccc cctgggacac ctgcgtaccg
     3121 agatccggaa actccggtat gtcgacgaac tggatcccca gcgccggacg cggctggacc
     3181 ccggggttgc gggggtcggc gttttcgatg gcgctgcgag tgggttcggc gaacgccgat
     3241 gcctgttgca ggtacgccgg gttctgatag gtcgaggcac gcttgcccgc cggcaccctg
     3301 gaccagccga gctcggtccc cacgagctct tcgtatttct tgctggaggc ccacgagatg
     3361 aacttccagg cattgccctt tttcgcactc gcctgctgga tgctccacga ccacgcgtag
     3421 agccaacccg agctggcggt ctcgaccact ggtgcgaggg cgtacccaat ctttcccttc
     3481 accggtgaat tggctgcctc gagagatccc gcggcggagg tggcgtcata ccacatggcg
     3541 gcgttgccct ggatgaggtc gttgaggcac tcggtgtagc cggcttgcgg ggctccggcc
     3601 tcgccgtgtt tgcggacgag gtccacgtag aactgggtgg ccttcctaaa agccgcgccg
     3661 ttgacctggg gttgccagtc cttggtgaac caggtccctc caaaggtgtt cacgacagtg
     3721 gtcagcgggg cgaagagctg accccaaccc ggctggccgc gcaggcagat cccagccatc
     3781 cccggctcgg cgtggtcgac cttcgccgcg atatccgcaa cttggggcca cgtcggcttc
     3841 accggcattc cgatgccctt tgcctccagc acgtccttgc gatacatgag aaaggaggac
     3901 tcgccataga acggctcacc gtaaagcttc ccgtcctccg ctgtcaggga ggtcgtcatg
     3961 ggcgcgagaa tgtccgcctg atcgaacgtc ggatcggctg ccacgtagcg gtccagcggg
     4021 gcgatccatc tgctcttggc gtaaatcggt atctcgaagt tgctcagggt ggcgacgtcg
     4081 tactgcccag cctggctgga gaactcctgg ctgatcttgt ctcgtacatc gttctccggc
     4141 aggacggtga agttgaccgt gataccggtg tccttagtga agtgcttcgc ggtgagctgt
     4201 tggagatcga ccatctgtgg gttgttgacc atcagcacgt tgatgctgtt ggggccgccg
     4261 ccgcccgcgc caccacccca cccggcgcac ccgctcacga ccagagccag cgtggccgtc
     4321 actacggcca gtgtcgatcg cacgcgtctc cgcaccggtc ggtcctccac cacttggaag
     4381 agcgatgtag acccggctgc tcataggagc ggatcggatc tcatacgaga cacgagtgtg
     4441 atatgccaca caagcccagt caagggtgtg tgcaatagtg ggcagatcgt tgctcaaatg
     4501 agcaggaggg gtgatggcag atcaggtcgg ggggcccgcc caggtggtgc tcactgcatc
     4561 cgtcgcgcgc cgctactacc tcgacgggcg gtccaaggtc gagatcgccg aggagttcgg
     4621 actgagtcgc ttcaaggtcg cacggctcat cgacgcggcc cgggacagtg ggctggtccg
     4681 gatcgagatc cgtcaccaag gcgtgatcga cgtggatctg tcggcgcatg tccaggacag
     4741 gttcggactg caacacgcga tcatcgtcga cacgccggac gaccacatgg agtcgctgcg
     4801 tcagcatctg gggcgagccg cagccgagtt gctcagcgag gtgatcactc ctcgggacgt
     4861 gctcggtctt gcttgggcac ggtcggtcag cgcgatggcc aaggccttgc cgcgactgcc
     4921 cggcatcccg gtcgtccagt tgaccggggc cctctcgcta ccgaacgacg acgactgctc
     4981 cgtcgacgcc gtgcgagacg tggcacgcgc ctcgggtggg cgcgcatacc tcttctacgc
     5041 ccccttcaca gttcccgacg ccacgaccgc ccgcgctctg cgccaacagc ctgaggtcgc
     5101 gcgcgccttc ggccagttac cctccgttac caaggccgtt gctggggtgg ggctctggga
     5161 atgtggccag tcaaccctgt atgacgcggc agaggagcgc gaccgccgag cgctgcgccg
     5221 cctcggcgtc tgtgccgata tctcaggcgt ctttgtctca gccgacggcg aagcagtgca
     5281 gactgacctt gcggagcgga tgatcggcat cagcgcggaa cagatgcgcg cgataccgga
     5341 agtcattgcc attccatacg gcacggctaa ggcgcccgcc gtgcgggccg cgctccgcag
     5401 cgggctcgtc ggcggcctcg tgacgcatac agcgctggct caggcgctgc tcgacaacgg
     5461 atgaacgaca cttcctataa cggcgagcgg gcgggattcg gaggaattgg tgtccgatcg
     5521 gcaacagccc gaagtcccgt tactaggggg cactgccaac cgtggacagg tcgttcgagt
     5581 cggcaacacg gtacgtcggc cgcaacgacg aaccgcccgg cgacccatgc cctgctgtgc
     5641 catctgacgg atatcggatt cgacggggcc ccgcgcttca ttggcataga ttcacagaag
     5701 cgagaagtgc tttcatacat cctgggaaca gccgtgaccc caccgtatcc cgacggggcg
     5761 ctcactgatg aagcccttgt cagtgtggcc gaactcctgc gcgccataac gatcccaact
     5821 tggataacgt cgtgttccgc gccggtaaag ccgtggcgct catcgacttc gacctcgcga
     5881 gcccaggctg cagcttgtcg gacatcgcat gtgcagcgcg actgtgggca ccgctccgac
     5941 ctgactccta tatcaacgac gtccggcgcg accgagtgct cgaccggttc cgactattcg
     6001 tagacagcta cgggcttgtt gacgccgacc gactacgagt cgtggacgcc gttgcgcaga
     6061 accacaattg gtgctatgac aacgtccgca acagtgctgc acagggccat ctcgctttct
     6121 ctgaatattg gaatgcggcg gcgacggagc gagctcaacg gatttaccag tggtgcctcg
     6181 aaaaccggca agccctgcgg gccgcgctcg tctgatggag caggtggcct tggttcgtgg
     6241 gttccgtcgc tcctcaacct ggctgatcag ccagtcatgg atccgacgcg cttgtttgtc
     6301 agcccgggtc cgggaggcac gatctcaatc aagtcatgcg gacgcttggt caccgggtca
     6361 aacccggcat aaacgcggac ccgcagcgcc ccactcggta gctcgtcgat gcttccccgg
     6421 gaacgtcccg cgagggcccg gtgatcgcgt cacagaacgc aggccaatgc gattcgtgtc
     6481 acgtgaaccc ttccatgatc acccaggaat atattttacc tggtagaacc ggagccgacg
     6541 cggggactcg aaccccgaac ctaccgctta caaggcggtt gctctgccag ttgagctacg
     6601 ccggcgggtg cgaccgtcat cgtaggcgaa ccgggttctg cagcgccgcg gtgccgggct
     6661 acgccgcggt gtcgatcagc aggtgggacg ctgcgccgct agtctcggtg ggtaacggtg
     6721 cggataggaa ggccacctgg tgacagacgg cgcaaccccg gcaaccaccg aggcggattt
     6781 cgtggtggtg gccaaccggc tgccggtgga cctggagcgc ctacccgatg gcacacagcg
     6841 gtggaagtcc agccccggtg ggctggtcat tgcgctagag ccattcctac gctcgcaccg
     6901 cggcgcttgg gtcggctggc cgggtgtccc cgacctcgag gcagagccga tcgccgatgg
     6961 cgacatcacg ttgcatcctg tgacgttgtc cagaaccgag ctcaccgact actacgaggg
     7021 cttctccaac gcgacgttat ggccgctcta ccacgatgcg gtagctcctc cggcgtttca
     7081 tcgacactgg tggaacgctt acgtggaggt caatgagcga ttcgccgagg ccaccgccaa
     7141 ggtggcaggc gacggtgcca ccgtctgggt acaggactac cagctgcagc tcgtgccccg
     7201 gatgctgcga acgctgcgac cggacctacg gatcgggttc ttcctgcata tcccgttccc
     7261 gccggtcgag ctgttcatgc aattgccatg gcgaaccgag ctggtccgtg gtctgctcgg
     7321 cgccgacctg gtcgggttcc agttgccagg tggcgcgcac aacttcctgt tcctggcgcg
     7381 ccggctggct gggatgtcgg cgaccaggag cgccgtc
//
LOCUS       DASVXZ010000194         4463 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1445111, whole genome shotgun sequence.
ACCESSION   DASVXZ010000194 DASVXZ010000000
VERSION     DASVXZ010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1445111"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1603)
                     /locus_tag="VF788_03810"
     CDS             complement(<1..1603)
                     /locus_tag="VF788_03810"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010307192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEX8933316.1"
                     /translation="MAFPSDLEIARGATLRPLVDVAGTMGLGPHLLEPYGDHVMKIKT
                     AAIDELAQAPTAKYVVVTAITPTPLGEGKTTTTVGLGQGFAHIGKRATVAIRQPSMGP
                     TFGIKGGAAGGGYSQVVPMETLNLHLTGDMHAVTAAHNLLAAMIDNQLQQRNGIDLDP
                     HSITWNRVLDVNDRTLRNIVIGLGSKADGTPRQSGFDITAASEVMAVLALSTSLQDMR
                     ARLGRIVVGQTRDGQPVTAENLRAAGAMTVIMREAIKPNLLQTLEGTPVLVHAGPFGN
                     IAHGNSSVIADLIGIHCGDYLITEAGFGADMGAERFFNIKCRASGLRPDAAVLVATVR
                     ALKTHSGRYKVAAGRPLPEDMLVENPEDVHAGAANLRKQIENVRIHGVSPVVAINAFP
                     TDHPSEHAAIREIADAMGARSALCTHFAEGGKGAAELATAVAEAAEEPSQFAFLYPDD
                     ATLREKILTVALRVYGAQAVDYDYKAARQLESYERNGFGKLPVCIAKTHLSISSDPAL
                     KGAPTGWTLPVRRVRASVGAGFIYPI"
     gene            complement(1693..3189)
                     /gene="ahcY"
                     /locus_tag="VF788_03815"
     CDS             complement(1693..3189)
                     /gene="ahcY"
                     /locus_tag="VF788_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX8933317.1"
                     /translation="MTVAPAAETGSVHKSRLQSRAGIDFAVADLGLAEFGRNEIRLAQ
                     HEMPGLMALRREYAEVFPLRGARISGSLHMTVQTAVLIETLVSLGAEVRWASCNIFST
                     QDHAAAAVVLGPHGTAEEPQGVPCFAWKGETLQEYWWCTEQMLTWPDGAGPNMILDDG
                     GDATLLVHKGTTFEKAGVVPSADDNDSDEQKVFLDVLRASLDATPGKWTAIGEGIRGV
                     TEETTTGVHRLYQLAAAGELLFPAINVNDSVTKSKFDNKYGCRHSLIDGINRAVDVLI
                     AGKLALICGYGDVGKGCAESLRGQGARVVVAEIDPICALQAMMDGFTVDTLNNVVDKA
                     DIIVTATGNKDIVTVDHMSRMKHQAILGNIGHFDNEIDMAGLERRSGARRLVIKPQVD
                     EWTFKDGHSIIVLSEGRLLNLGNATGHPSFVMSNSFSNQVIAQVELFTKHQEYDREVY
                     VLPKVLDEKVARIHVEALGGELTKLTKEQAEYIDVDIEGPYKSAHYRY"
     gene            complement(3235..4212)
                     /locus_tag="VF788_03820"
     CDS             complement(3235..4212)
                     /locus_tag="VF788_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009074800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEX8933318.1"
                     /translation="MSIIVTGSIATDHLMVFPGRFTEEIVPEALDHISVSFLVEDLAI
                     RRGGAGANIAFNLGCLGLAPVLVGAVGADFAEYGQWLSAHGVDVSAVHVSQTRHTARF
                     LCTTDSDQNQIASFYPGAMSESRDIELKPIVDRFGKCDLVLVGPNDPAGMLRHTEECR
                     DLGYPFAADPSQQLASLDGDQIKPLIEGAAYLFTNTYERGLLERKTGWSDEDILERVG
                     VSVMTRGAKGVTVQRPGEPSISVTPPQELAKADPTGVGDAFRAGFLAGVQWGVGDERA
                     AQLGCMLATLVIESVGTQEHNFEPESFLERFSQTYGPDSAAEVAAHLHA"
     gene            complement(4226..>4463)
                     /locus_tag="VF788_03825"
     CDS             complement(4226..>4463)
                     /locus_tag="VF788_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methionine adenosyltransferase domain-containing
                     protein"
                     /protein_id="HEX8933319.1"
                     /translation="GTEQVPRTTIEKLVAEHFDLRPAAFRRYLGLHRPIYAKTAAYGH
                     FGRNDPDFTWERTDKAAGLRESAGLPASIEPAAV"
BASE COUNT          731 a         1506 c         1402 g          824 t
ORIGIN      
        1 agatcgggta gatgaacccg gcccccaccg aggctcgcac ccgccggacc ggcagagtcc
       61 agcccgtcgg tgctcccttg agcgccgggt ccgaggagat cgacaggtgc gtcttagcga
      121 tacacaccgg cagctttccg aagccgttgc gctcatagct ttccagctgc cgggccgcct
      181 tgtagtcgta gtccactgcc tgtgcgccgt acacccgcag cgccacggtg aggatcttct
      241 cccgtaacgt ggcgtcgtcg ggatacagga aggcgaactg ggagggttcc tcggcggcct
      301 cggcgacggc ggtagcgagc tcagcggcgc ccttgccgcc ctcggcgaag tgcgtgcaga
      361 gtgcggaacg ggcgcccatg gcgtcggcga tctcccggat ggcggcgtgc tcggacgggt
      421 ggtcggtggg gaaggcgttg atcgcgacca ccggtgagac gccgtggatc cggacgttct
      481 cgatctgctt acgcaaattg gccgcgccgg cgtgcacatc ctcggggttc tcgaccagca
      541 tgtcctccgg caacggcctg ccagcggcga ccttatatcg gccggagtgc gtcttgagcg
      601 cgcgcaccgt ggccaccagc acggccgcgt ccggccgcaa tcccgacgcg cggcacttga
      661 tattgaagaa acgttcggcg cccatgtcgg cgccgaaacc ggcctcggtg atcaggtagt
      721 caccgcagtg gatgccgatc agatcggcga tcaccgagga gttgccgtgt gcgatgttgc
      781 cgaagggccc ggcgtgcacc agcaccggtg tgccctccag cgtctgcagc aggttaggct
      841 tgatcgcttc tcgcatgatc actgtcatgg cgccggcggc ccgcaggttc tcggccgtga
      901 ccggctggcc atcgcgggtc tgaccgacca cgatccgccc cagccgggcc cgcatgtcct
      961 gaagcgaggt ggacagcgcc agcaccgcca tcacctcgct ggccgcggtg atgtcgaacc
     1021 cgctctgccg gggtgtgccg tcggccttcg acccgagccc gatcacgatg ttgcgcaggg
     1081 tccggtcgtt gacgtcgagt acccggttcc aggtgatgct gtgcgggtcg agatcgatac
     1141 cgttgcgttg ttgcagctgg ttgtcgatca ttgcggcgag cagattgtgc gccgcggtca
     1201 ccgcgtgcat gtctccagtc aggtgcaggt tgagcgtctc catcggcacg acctggctgt
     1261 aaccaccgcc tgccgccccg cctttgatcc cgaacgtggg ccccatcgag ggctgcctga
     1321 tcgcgaccgt ggcccgcttg ccgatgtgcg cgaatccctg gcccagcccc acagtggttg
     1381 tggtcttgcc ctccccgagc ggagtcggcg tgatcgccgt gacgaccaca tacttggccg
     1441 tgggcgcctg cgccagctcg tcgatcgccg cagtcttgat cttcattacg tggtcgccgt
     1501 aaggctccag caggtgcggc cccaacccca tcgtccccgc cacatccacc agcggccgca
     1561 gagtcgcacc acgcgcgatc tcaagatcac taggaaaagc cactgatgga ctcccttcgg
     1621 gtcaccacgg gcatcgtccg ggcacggccg ttccagccac catgatcaat gcgcgagcgt
     1681 attcgggaac tcctagtagc ggtagtgggc ggatttgtag ggaccctcga tgtcgacgtc
     1741 gatgtattcg gcctgttcct tggtcagctt ggtgagttcg ccaccgagag cctcgacgtg
     1801 gatccgggcg accttctcat cgagcacctt gggcaggacg tagacctccc ggtcgtattc
     1861 ctggtgcttg gtgaacagct cgacctgggc gatcacctgg ttggagaacg agttcgacat
     1921 cacgaagctg ggatgcccgg tcgcgttgcc cagattcaac agccgcccct cggacaacac
     1981 gatgatcgag tgcccatcct tgaacgtcca ctcatcgacc tgcggcttga tcaccaaccg
     2041 gcgggcaccc gaccggcgct ccagcccggc catgtcgatc tcgttgtcga aatgcccgat
     2101 gttgcccagg atcgcctggt gcttcatccg cgacatgtga tcgaccgtca cgatgtcctt
     2161 gttacccgtg gcggtgacga tgatgtctgc cttgtcaacc acattgttca gggtgtcgac
     2221 ggtgaagccg tccatcattg cctgcaacgc gcagatcggg tcgatctcgg ccaccaccac
     2281 ccgggcgcct tgaccccgca atgactccgc gcagcccttg ccgacgtcgc catatccgca
     2341 gatcagggct aatttcccgg cgatcaagac gtcgaccgcg cggttgatcc cgtcgatcag
     2401 cgaatgccga cacccgtact tgttgtcgaa cttcgacttc gtcaccgagt cgttgacgtt
     2461 gatggccggg aacagcagtt cccccgccgc ggccagctgg tagagccggt ggaccccggt
     2521 ggtggtctcc tcggttacgc cgcggatccc ctcgccgatc gccgtccatt tcccgggcgt
     2581 cgcgtctagt gaggcacgca acacgtccag gaacaccttc tgctcatccg agtcgttgtc
     2641 gtcggcgctg ggcaccacgc cagccttttc gaaggtcgtt cccttgtgca ccagcagggt
     2701 ggcgtccccg ccgtcgtcca ggatcatgtt cggtccggcg ccgtccggcc aagtcagcat
     2761 ctgctcggtg caccaccagt actcctgcag cgtctcgccc ttccaggcga aacatggcac
     2821 tccctgcggc tcctcagccg tcccatgcgg acccagcacc acggctgccg cggcatgatc
     2881 ctgggtggag aagatgttgc acgacgccca ccgcacctcg gcgccgagac tgaccagggt
     2941 ttcgatcaac accgcggtct ggacggtcat gtgcagcgac ccggagattc gtgccccgcg
     3001 cagcgggaac acctccgcgt actcacgccg cagcgccatc aaacccggca tctcatgctg
     3061 tgccaaccgg atttcgttac gcccgaactc ggccaggccc agatcggcca cagcgaaatc
     3121 aataccagcg cggctctgta gcctactttt gtggacggat ccagtctcag cggcaggcgc
     3181 cacagtcatc gacatgcact ccttggttga ttggggggaa tcgaagttca gcgctcaggc
     3241 gtgaaggtgc gcggccacct cggccgcgct gtcgggtccg taggtttggc tgaagcgctc
     3301 cagaaaactt tcgggttcga agttgtgctc ctgagttccg accgactcga tcaccagggt
     3361 agccagcatg cagccgagct gggcggcccg ctcatcaccc accccccatt gcacgccggc
     3421 caggaaaccg gcccggaagg cgtcaccgac gccggtcggg tcggccttgg ccagttcctg
     3481 cggcggagtc accgagatac ttggttcgcc cggccgttgc acggtcacgc ccttggcgcc
     3541 gcgggtcatc accgacacgc cgacccgctc caggatgtcc tcgtcgctcc agccggtttt
     3601 gcgttcgagc aggccgcgct cgtaggtgtt ggtgaacagg taggccgcgc cctcgatcag
     3661 cggcttgatc tgatcgccgt ccagcgaggc gagctgctgg gacgggtccg cggcgaatgg
     3721 gtaaccgaga tcccggcact cctcggtgtg ccgcaacatg cccgccgggt cattggggcc
     3781 gaccagcaca agatcacatt ttccgaatcg gtccacgatc ggcttcagct cgatgtcacg
     3841 ggactcgctc atcgcaccgg gatagaagga ggcgatctgg ttctggtcgg aatcggtggt
     3901 gcacaggaac cgggcagtgt gtcgggtctg cgagacatgt accgcgctga cgtctacgcc
     3961 atgggccgag agccactgcc cgtactcggc gaagtcggcc ccgaccgcgc ccaccagcac
     4021 cggcgccagc ccgaggcagc ccaggttgaa cgcgatgttg gcgcccgccc cgccgcggcg
     4081 gattgctagg tcctctacca ggaacgacac tgagatgtgg tcgagtgcct ctggcacgat
     4141 ctcctcagta aaccggccag gaaagaccat caggtgatcg gtggcgatcg accccgtgac
     4201 gatgatgctc acgcgttccc ctctctcaga cggctgccgg ctcaatactg gcgggtaaac
     4261 cggcggactc gcgcaacccg gccgccttgt ccgtgcgctc ccaggtgaag tcgggatcgt
     4321 tacgcccgaa gtggccgtaa gcggcggtct tagcgtagat cggccggtgc aaccctaggt
     4381 acctgcggaa ggccgccggg cgcagatcga agtgctcagc gaccagcttt tcgatggtcg
     4441 tgcgcggcac ctgctcggtg ccg
//
LOCUS       DASVXZ010000195         3290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1086500, whole genome shotgun sequence.
ACCESSION   DASVXZ010000195 DASVXZ010000000
VERSION     DASVXZ010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1086500"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(475..1299)
                     /locus_tag="VF788_03830"
     CDS             complement(475..1299)
                     /locus_tag="VF788_03830"
                     /inference="COORDINATES: protein motif:HMM:NF023144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase N-terminal
                     domain-containing protein"
                     /protein_id="HEX8933320.1"
                     /translation="MALSQRRYISKRSPDYTMPSPGRQTSGMAEGQESLWFGLGRVVW
                     FHADCPKGHHTVDAAWHSRLMAEVYSGRLDALEQTWRVWTELGEGLTENQWSTATRCP
                     GWTVAALYAHHSAFPRDMSAPLPSSDAVGDPVTAGELLRWFNAPEGVAHMMAETIADQ
                     VVSDAAEHTRRELIDRFSVHGPRALQRLRQADATLVVPWHTSGAVIMLVEALRIVLLE
                     ATVHLLDVQRALDHPPLVPPSALKDTAQLLAELAPAVEFIEAATGRSTHSPLPVLR"
     gene            1715..2227
                     /locus_tag="VF788_03835"
     CDS             1715..2227
                     /locus_tag="VF788_03835"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX8933321.1"
                     /translation="MTTGLFESQRSLPWIICPALGRVGHGGSRLCRSQLDGRRGQSSP
                     QSSRAGTGPLVTATVLGQGTAPEKLAITTAGASDVVVQQVTIQSGGRTGWHTHAGKVL
                     AVVKAGTLTRYTADCKAVTYPAGQAFVETEGVHEGRNQGTVPVELYVTYIDPAGSPLK
                     TNAIAPTCGQ"
     gene            2682..>3290
                     /locus_tag="VF788_03840"
     CDS             2682..>3290
                     /locus_tag="VF788_03840"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX8933322.1"
                     /translation="MAGNGELIAGRYRLISRLGSGAMGVVWQARDERLHRSVAIKQLL
                     LPRELSDIEVQEANRRAMREARITARLHHPHAIAVYDVVDHNNHPFLIMEYLASESLA
                     TVLSRQSALLPEAVARIGSQISSALAAAHRVGIVHRDIKPGNVLLTDDGTAKITDFGV
                     SHAVGEVTVTATGILLGTPAYLAPEVAQGHSADPASDVFSLGA"
BASE COUNT          618 a         1009 c         1082 g          581 t
ORIGIN      
        1 gatggcagac gtcctccgcc aacggaaaca accgcagtag acgctccgcc ctaccgcgac
       61 accccacggt cagcggtaca acgacgtccg tagtcgatcg agtataaaga ttcctccgga
      121 agggacagga agatcaataa cgttacccac agcatcacaa tccgcccaga aaagataggt
      181 aagcgtgagg tgagccggcc tacctgctcc tgtgggtgga ctgccacgtg ggcctacatc
      241 acggagaaat tcgctcggga cgcgggacag gaacacgtta agcaggtact agcgaaactg
      301 caggcagcga tcgggtaggc ggtagtcccg agtagcgctg ggcaatcact tcacaaaccg
      361 tacatctctg gcagagcgcg tgaccctccg ggtgtaagaa ttctcaaaag cgccatgaca
      421 cagggccgag tgtcgaccgt ttgccgactt ttttgccgac tcgcgaaagc aaggctagcg
      481 cagcactggc agtggggaat gcgtcgagcg gccggtagcg gcctcgatga actcgacagc
      541 gggggcaagc tcggccagta gctgtgcggt gtccttcagc gccgagggcg gcacgagcgg
      601 tgggtggtct aaagcgcgtt gcacatcaag gaggtgaaca gtggcttcca gcagcacgat
      661 ccggagcgct tccaccagca tgatcactgc cccggaggtg tgccacggca cgaccagagt
      721 ggcgtcggct tggcgcagcc gctgcagcgc acggggccca tgcacactga accggtcgat
      781 gagttccctt ctggtgtgct cagcggcgtc cgagacgacc tgatcggcga tcgtctcggc
      841 catcatgtgt gccaccccct ccggggcgtt gaaccaccgg aggagttccc ctgccgtcac
      901 gggatctccc accgcgtccg acgagggcaa cggagcgctc atatcccggg gaaaggcgga
      961 atggtgcgcg tagagtgctg ccacagtcca gccagggcac cgggtcgcgg tagaccactg
     1021 gttttcggtc aggccctcgc cgagttcggt ccagacccgc caggtctgct caagagcatc
     1081 caacctaccg ctgtagacct cagccatgag ccgactgtgc cacgccgcat ccaccgtgtg
     1141 gtgacccttg ggacagtcgg cgtgaaacca cactacccgt cctaggccga accacagcga
     1201 ttcttgtccc tcggccatcc cggaggtctg cctgcccggc gagggcatgg tgtaatcggg
     1261 gctgcgtttg ctgatgtagc gccgctgaga caatgccaac cagggcctta gtggccgaaa
     1321 cggccatcac ctgtaaagac gcttgtagat gctggtcgac gttgggtgat gttgggtgat
     1381 gcggtttgta cccgatttgt acccgggcac agctcgcacg ggaacacctg acgccgacgc
     1441 cctggggatg gggacgtcgt ccgcgcgggc ctggtcgcag tcgtttggct ttgccccggt
     1501 gtcaacggca gccgaaaact ggatctgacc acattcgtga acacgatcac tgaagcgatg
     1561 tgctggtacg cagagttgcc ctgagcaggc cacaatcagc agggcgcgcc cgcggtacat
     1621 cgctacggtg ggccttggtc tcggacagct caaggacacc acccgagggg gacgcaggtc
     1681 aatgaccaca tccgggcaca gcaggtctat accattgacg accggcctgt tcgaatcgca
     1741 gcgcagcctg ccgtggatca tttgccctgc cctcggccgc gttggtcatg gcgggagccg
     1801 cctgtgccgc tcccagctcg acggtcgccg gggccagtcc agcccgcaaa gcagccgcgc
     1861 cggcaccggc ccgctagtca ccgccaccgt gctcggccag ggtaccgcgc ccgagaaact
     1921 cgcgatcacg acggcaggcg cctctgacgt cgtcgtccag caggtgacga tccaatcggg
     1981 cggccgtacc ggttggcaca cgcacgccgg caaggtgctc gccgtggtca aggcggggac
     2041 gctgacccgc tacaccgccg attgcaaagc ggtgacctac cccgccgggc aggcgttcgt
     2101 tgagaccgag ggtgtccacg aggggcgcaa ccagggcaca gtcccggtcg agttatacgt
     2161 cacctacatc gatccggccg gcagcccctt aaagaccaac gccatcgcgc cgacctgcgg
     2221 gcagtgagcg cgcgagatca tgatcttaaa tcggtcatgc acttcggtgt gaacgctgat
     2281 cagttgtgcg ttcggttgct tgcgagtgtt gcggcgtgcc gatggcttgg ggctatgtgt
     2341 cggtgggtat caacgcgggt ggattagtcg tgctggtgcg ctgacgattc gctgacggtg
     2401 atcacctgtg accctactgc tgttggtagg gcccggatgc ggaccggcaa gtcaggtgcg
     2461 ggatcgtatt cgcaaatcag gactggaacg gtgagtaacc gatggcgcct ggatcaatct
     2521 ggcagggcgg tagtgatgct gtccgaagtg gactttccgg acctgctgtg gcgtctttga
     2581 cgtcgtaggc tgcagtgagg cgcgtgtggc agggcggcgc atagcgggaa tcccggatgg
     2641 ccacctccag tccgcacggt aggcacccaa taggaggtgc agtggccggt aacggtgagc
     2701 tgatcgcggg acgctaccgg ttgatttcgc ggctgggcag cggagcgatg ggggtggttt
     2761 ggcaggcccg tgacgagcgt ttacaccgca gcgtcgcgat caagcagctg ttgctgcccc
     2821 gggagctaag tgatatcgag gtgcaggagg ccaaccgccg ggccatgcgc gaggcccgga
     2881 tcaccgcccg attgcaccat ccgcacgcga tcgcggtcta tgacgtggtt gaccacaaca
     2941 atcacccatt tctgattatg gaatacctgg cgtctgaaag cctggccacg gtgctgtcgc
     3001 gccagagtgc gctgttaccc gaggccgtcg ccaggatcgg cagtcagatc agctccgcgc
     3061 tggccgccgc gcaccgggtg ggcattgtgc accgcgacat caaaccgggc aatgtgctgc
     3121 tcaccgacga cggcacggct aagatcaccg actttggtgt ctctcacgcg gtgggtgagg
     3181 tgaccgtgac cgctaccggg atcttgctgg ggacaccggc ctatttggct ccggaggtcg
     3241 cccagggcca cagcgccgat cctgcctcgg atgtgttctc cctgggcgcc
//
LOCUS       DASVXZ010000196         2462 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1624327, whole genome shotgun sequence.
ACCESSION   DASVXZ010000196 DASVXZ010000000
VERSION     DASVXZ010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1624327"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            422..>2462
                     /gene="ppsA"
                     /locus_tag="VF788_03845"
     CDS             422..>2462
                     /gene="ppsA"
                     /locus_tag="VF788_03845"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HEX8933323.1"
                     /translation="MAEQGVVRWFEDLNSGDVALVGGKNASLGEMIRNLSPKGVRVPG
                     GFATTAQAYWDFLDANDLRAPISEQIEAYHRGADLAEVGEAVRGMMMDAEFPPDLAQG
                     FRNAYRELGTRLQRDNPDVAVRSSATAEDLPEASFAGQQETFLHVTGEAALLDACKRC
                     YASLFMDRAISYRKDHEFDHLKVALAIGVQEMVRSDRSGAGVMFSIDTDSGFPHVVLV
                     NASWGLGESVVAGAVDPDEYLVFKPLLESETLTPVISKEVGAKRSKMVYNESGDDPTK
                     IVETTEAERLAFVLNDREILQLARWATIIEDHYGGPTDMEWAKDGNSGELYIVQARPE
                     TVQARKDASTMSSYRLSERGTQLTSGLAIGDAIAAGKVCKLRSAGEIDRFEDGAVLVT
                     GITDPDWEPIMKRAAAIVTDHGGRTSHAAIVSRELGVAAVVGTGDATSILSDRQEITV
                     SCAEGETGVVYEGILDYQQREIDLADIPATTTGVMLNLADPSAAFRWWRLPADGVGLA
                     RMEFMINNQIQIHPMALLRFDDLEATDDARRQIAEMTRGYEDKTEFFVERLAHGIARI
                     AATWWPKPVIVRMSDLKTNEYARLIGGTAFEPREENPMLGWRGASRYYSEGYRQGFGL
                     ECGAIRRVRDDMGLTNTVVMIPFCRTLEEADRVLEEMADHGLSRGCNGLQVYVMAE"
BASE COUNT          476 a          745 c          843 g          398 t
ORIGIN      
        1 ggtcggggag cgaagcagct gggtcggagg gcaacgcggg cgggtcgggg agcgaagcag
       61 ctgggtcaag cggcagagca ggtgggtcag gcggcagcgc aggtgaatct agagctggga
      121 cggcagcagc ctgcacgacc atggcttcgc gaccaggcga tgactccgat gtaccgcagc
      181 cggtgccgcc caggaccagg gcgatcgcga tggtgagagc gaccttcgtg cgacagcgca
      241 tggcgatcca agttccctgt ccctcggcgg agcggtgggt catggtagct acatcggccg
      301 aacgcgtgcg cgacgacacg accgctctgt gtgaccactg ctccggactg agttttcact
      361 ccgggcgggg cgggcatccg gggagcggaa ggtcccccgt ggcctcaggg aggaatccga
      421 tatggccgag cagggcgtgg tgaggtggtt tgaagatctc aactccgggg acgtcgcgct
      481 ggtcggcgga aagaacgcct cgctcggaga gatgatccgg aacctgtcgc cgaagggcgt
      541 tcgagtgcca ggcgggtttg ccaccactgc ccaggcgtac tgggacttcc tggatgccaa
      601 cgacttgcgc gcccccatct ctgagcagat cgaggcctac caccgcggcg cagatctggc
      661 agaggtgggc gaggccgtgc gcgggatgat gatggacgcc gagttcccgc cagacctcgc
      721 ccaggggttc aggaacgcgt accgggagct cgggactcgc ctgcagcgag acaatccgga
      781 cgtggcggtg cgcagcagcg ccacggctga ggatcttccc gaggctagct tcgctggcca
      841 acaggagacc ttcctccacg ttacgggcga ggcggcgttg ctggatgcct gcaaacgttg
      901 ctatgcgtcg ctgttcatgg accgggcgat cagttaccgg aaggaccacg aattcgacca
      961 cctcaaggtg gcgctggcca tcggcgtgca ggaaatggtc cgctccgatc gatccggagc
     1021 cggagtgatg ttctccatcg acaccgacag cggcttcccg catgtggtgc tcgtcaacgc
     1081 ctcctggggt ctgggcgagt ccgtggtcgc gggcgcggta gacccagacg agtacctggt
     1141 cttcaagcca ctactggaaa gcgagacatt gaccccggtg atctccaagg aagtcggcgc
     1201 caagcgatcc aagatggtct acaacgaatc cggcgacgat ccgacgaaga tcgttgagac
     1261 aacagaggcc gaacggctgg ccttcgtcct gaatgaccgg gaaatactgc agttggccag
     1321 gtgggcgacc atcatcgagg accactacgg cggcccgacg gacatggaat gggccaagga
     1381 cggcaacagc ggtgagctct acatcgtcca agcgcggccc gagacggtgc aggcgcgcaa
     1441 ggatgcctcg actatgagtt cataccggct gagcgaacgc ggcacgcagt tgactagtgg
     1501 tctggccatc ggcgacgcca tcgccgccgg gaaagtctgc aagctgcgca gcgccggcga
     1561 gatcgaccgg ttcgaagacg gtgccgtgct cgtcaccggc atcaccgacc ccgactggga
     1621 accgatcatg aagcgggcag cggcaatcgt cactgaccac ggcggccgca cctcccacgc
     1681 cgccattgtg agccgagagc tgggcgtggc cgctgttgtc gggactggcg atgccaccag
     1741 catcctctcg gatcggcagg agatcaccgt ttcgtgcgct gagggcgaaa cgggcgtcgt
     1801 ctacgagggc atcctcgatt accagcaacg cgagatcgac ctcgccgaca tacctgcaac
     1861 gacgactggg gtcatgctga acctggccga cccctcagcg gccttccggt ggtggcggtt
     1921 accggccgac ggcgttggcc tggcgcgcat ggagttcatg atcaacaacc agattcagat
     1981 ccatccgatg gcgctccttc gcttcgacga tctcgaggcc actgacgacg cccgtcgcca
     2041 gatcgccgag atgacccgcg gttatgaaga caagaccgag ttcttcgtcg aacgcctggc
     2101 ccatgggatc gcccgcatcg ccgccacctg gtggccaaag cccgtcatcg tccggatgag
     2161 tgatctcaag acgaacgaat acgcaaggct tatcggcggt acggcgttcg agccgcgcga
     2221 ggagaatcct atgctcggct ggcggggagc cagccgctac tacagcgagg gctaccggca
     2281 gggtttcggc ctggaatgcg gggccatcag gcgggtccgg gatgacatgg ggttgaccaa
     2341 cacggtcgtc atgatcccgt tctgccgaac tttggaagaa gccgaccgag tccttgagga
     2401 aatggccgat cacggtctat cccgcggctg caacggcttg caggtctacg tgatggcgga
     2461 ga
//
LOCUS       DASVXZ010000197         3854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1187263, whole genome shotgun sequence.
ACCESSION   DASVXZ010000197 DASVXZ010000000
VERSION     DASVXZ010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3854
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1187263"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..843
                     /gene="rpsC"
                     /locus_tag="VF788_03850"
     CDS             <1..843
                     /gene="rpsC"
                     /locus_tag="VF788_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEX8933324.1"
                     /translation="FRLGISTDWKSRWYADKQYGEYVKEDVAIRRLLSKGMERAGIAK
                     VEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEKLSGKQVQLNILEVKNPEAE
                     AQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRSPQVKGIRVQCSGRLGGAEMSRSEFYR
                     EGRVPLHTLRADIDYGLFEARTTFGRIGVKVWIYKGDVVGGRREREIENSANAAAAAA
                     RAPRRERPARRRSGATGTTGTSTEAGRAAAAELAAAPPDAPQAAPGEPTASPADTATE
                     RGEG"
     gene            847..1266
                     /gene="rplP"
                     /locus_tag="VF788_03855"
     CDS             847..1266
                     /gene="rplP"
                     /locus_tag="VF788_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEX8933325.1"
                     /translation="MLVPRKTKHRKQHSPGRSGMASGGTQVSFGDFGIQALESAYVTN
                     RQIESARIAINRHIRRGGKVWITIFPDRPLTKKPAETRMGSGKGSPEYWVANVKPGRI
                     MFEMTYPNPLVAREALRRAMHKLPMKCRIVSREGGDV"
     gene            1267..1515
                     /gene="rpmC"
                     /locus_tag="VF788_03860"
     CDS             1267..1515
                     /gene="rpmC"
                     /locus_tag="VF788_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEX8933326.1"
                     /translation="MAATTTASELRELTDDELALRLRESKEELFNLRFQMATGQMDNN
                     RRLRTVRRDIARIYTVMHERELGLSVSPDAAAGSEGAA"
     gene            1512..1802
                     /gene="rpsQ"
                     /locus_tag="VF788_03865"
     CDS             1512..1802
                     /gene="rpsQ"
                     /locus_tag="VF788_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005453253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEX8933327.1"
                     /translation="MSDTERDTAAPPVGRNQRKVREGYVVSDKMDKTVVVALEDRKKH
                     PLYGKVLRSTTKVKAHDEANVAGIGDRVLLMETRPLSATKRWRLVQILEKAK"
     gene            1816..2184
                     /gene="rplN"
                     /locus_tag="VF788_03870"
     CDS             1816..2184
                     /gene="rplN"
                     /locus_tag="VF788_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007073026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEX8933328.1"
                     /translation="MIQQESRLRVADNTGAKEILCIRVLGGSSRRYAGIGDIIVATVK
                     EAIPGANVKRGDVVKAVIVRTAKEKRRPDGSYIRFDENAAVLIKPDGEPRGTRIFGPV
                     GRELRDKRFMKIISLAPEVL"
     gene            2185..2499
                     /gene="rplX"
                     /locus_tag="VF788_03875"
     CDS             2185..2499
                     /gene="rplX"
                     /locus_tag="VF788_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003886882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEX8933329.1"
                     /translation="MKVRKGDTVVVIAGKDKGAKGKVIQAYPDTGRILVEGVNRIKKH
                     TRISRTQRGAQSGGIVTQEAAIDVSNVMVVDSDGKPARVGYRSDDEGRRVRVSRRTGK
                     DI"
     gene            2501..3076
                     /gene="rplE"
                     /locus_tag="VF788_03880"
     CDS             2501..3076
                     /gene="rplE"
                     /locus_tag="VF788_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEX8933330.1"
                     /translation="MTVTSVENARAVPRLKTRYREEIATALREQFAYSNAMQVPGVVK
                     VVVNMGVGEAARDAKLMDGAVRDLTAITGQKPLVRKARKSVAQFKLREGMPIGAKVTL
                     RGNRMWEFLDRLLTIALPRIRDFRGLSPAQFDGHGNYTFGLTEQSMFHEINPDNIDRQ
                     RGMDITVVTSATTDEEGRALLRRLGFPFKES"
     gene            3076..3261
                     /locus_tag="VF788_03885"
     CDS             3076..3261
                     /locus_tag="VF788_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEX8933331.1"
                     /translation="MAKKALVIKAARKPKFAVRRYTRCQRCGRPKAVYRKFGLCRICF
                     RQMAHRGELPGVSKSSW"
     gene            3389..3787
                     /gene="rpsH"
                     /locus_tag="VF788_03890"
     CDS             3389..3787
                     /gene="rpsH"
                     /locus_tag="VF788_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003974254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEX8933332.1"
                     /translation="MTMTDPIADMLTRLRNANSAYHDRVVMPHSKIKANIAEILQREG
                     YISGFHAEEASVGKSLVVELKFGPNRERSIAGLRRVSKPGLRVYAKSTSLPKVLGGLG
                     VAIISTSTGLLTDRQAAKKGVGGEVLAFVW"
BASE COUNT          743 a         1157 c         1341 g          613 t
ORIGIN      
        1 ttccggctcg gcatctcgac cgactggaag tcccgctggt atgcggacaa gcagtacgga
       61 gagtacgtca aggaagatgt cgcgatccgc aggctgctgt ccaagggcat ggagcgggcg
      121 ggcatcgcca aagtcgagat cgagcgcacc cgcgaccgcg tacgggtgga cattcacacc
      181 gcccgtcccg gaatcgtgat cggccggcgc ggtgcggagg ctgaccgtat tcggggcgag
      241 ctggagaagc tgtccggcaa gcaggtgcag ctcaacattc ttgaggtcaa gaatccagag
      301 gctgaggctc agctggtggc ccaaggggtg gcggagcagc tgtccaaccg ggtcgccttc
      361 cggcgcgcga tgcgtaaggc catccagtcg gcaatgcggt cgccccaggt caagggcatt
      421 cgagtgcaat gctcggggcg tctgggtgga gctgagatgt cccgttcgga gttctaccgg
      481 gagggtcggg tgccgctgca cacgctgcgg gccgatattg actacgggct tttcgaggcg
      541 cggacgacct tcggccggat cggcgtgaag gtgtggatct acaaaggtga cgtggtcggc
      601 ggacgccgtg agcgcgagat agaaaactct gcgaacgccg cggccgccgc cgcccgggca
      661 ccacggcggg aacgccctgc ccggcgccgg tccggggcga ccggcacgac cgggacctcg
      721 actgaggccg gccgcgctgc ggccgcggag cttgccgcgg caccacctga cgctccgcag
      781 gccgcgccgg gcgagccgac cgcgagcccg gctgacaccg ccacagagcg cggggagggc
      841 tgagacatgc tcgttccacg taagaccaag caccgcaagc agcactcgcc gggtcggtcc
      901 gggatggcct ccggtggaac ccaggtcagc ttcggcgact tcggtatcca ggcactggag
      961 tccgcctatg tgaccaaccg gcagatcgag tctgctcgta tcgcgatcaa ccggcacatc
     1021 cgccgtggcg gcaaggtctg gatcacgatc ttcccggatc gtccgctaac caagaagccg
     1081 gcggaaaccc ggatggggtc cggcaagggc tcgcccgagt actgggtggc caacgtgaaa
     1141 ccgggccgaa tcatgttcga gatgacgtac ccgaacccat tggtggcccg cgaggcgttg
     1201 cgccgcgcga tgcacaagct gccgatgaag tgccggatcg tgagtcgcga gggaggggac
     1261 gtgtagatgg cggccaccac cactgcgagc gaactgcgcg agctcaccga cgacgagctg
     1321 gcgctgcggc tgcgcgagtc caaagaggag ctgtttaacc tgcgcttcca gatggcgacc
     1381 ggacagatgg acaacaaccg ccggctgcga acagtccggc gggatatcgc ccgcatctac
     1441 accgtgatgc atgagcgtga gctgggtctg tcggtgtctc cggacgccgc tgcgggaagt
     1501 gagggtgcgg catgagcgac accgagcggg atacggcggc cccgcccgta gggcggaatc
     1561 agcggaaggt ccgggagggc tacgtcgtct cggataaaat ggacaagacg gtcgtggtgg
     1621 cactcgagga tcgtaagaag catccgttgt acggcaaggt gctgcggtcc accaccaagg
     1681 tgaaggctca tgacgaggcg aacgtcgcag gcatcggcga ccgggtgctg ttgatggaga
     1741 cccgcccgct gtcagcgacc aagcgctggc ggctggttca gatcctcgag aaggccaagt
     1801 gatcaaggag ttgacgtgat ccagcaggag tcgcgactgc gagtcgccga caacacgggt
     1861 gccaaggaga ttttgtgcat ccgtgtgctc ggtggcagct cgcgccgcta cgccggcatc
     1921 ggggatatca tcgtggcgac tgttaaggaa gccattcccg gcgccaacgt caagcgcggc
     1981 gatgtggtca aggccgttat tgtgcgtacc gccaaagaga agcgtcgtcc agacggttcc
     2041 tacattcggt ttgacgagaa cgccgcggtg ttgatcaagc ctgacggcga gccgcggggt
     2101 acccgaatct tcggcccggt cgggcgagag ctgcgggaca agcgcttcat gaagatcatc
     2161 tcgctggcac cggaggtgct ctagatgaag gttcgcaagg gcgacacggt ggtcgtgatt
     2221 gccggtaagg acaagggagc caagggcaag gtgatccagg cctacccgga taccggccgg
     2281 atacttgtcg agggcgtcaa ccggatcaag aagcacaccc ggatcagccg tacccagcgt
     2341 ggtgcgcaga gcggcgggat cgtcacgcag gaggctgcca tcgacgtctc caacgtcatg
     2401 gtcgtcgatt ccgatggtaa gccggcccgg gtgggttacc gcagtgatga cgagggcagg
     2461 cgcgtgcgcg tgtcgcggcg caccggcaag gacatttgag atgactgtga cgtcggtaga
     2521 gaatgcgcgc gcggtgccca ggctgaagac ccggtaccgc gaggagatcg ccactgcgtt
     2581 gcgcgagcag ttcgcctact ccaatgccat gcaggtacct ggggtagtca aggtcgtggt
     2641 gaacatgggc gtcggcgagg cagcccggga cgccaagctg atggacggtg ctgtgcggga
     2701 tctgaccgcg atcaccggtc agaagccgct ggtcagaaaa gcgcgcaagt ccgtcgcgca
     2761 gttcaagttg cgtgagggaa tgcccatcgg cgccaaggtg accctgcgcg gaaaccggat
     2821 gtgggagttc ctggatcggc tgttgacgat cgccctgccc cgtatccgcg acttccgcgg
     2881 tctgtcgccg gcccagttcg acggtcacgg caactacacc tttggcctta ccgagcagtc
     2941 gatgttccac gagatcaacc cggacaacat cgaccgccag cgtggcatgg atatcaccgt
     3001 ggtcacctcg gcgaccaccg acgaagaagg ccgggcgcta ctgcgtcgtc tgggcttccc
     3061 cttcaaggag agctgatggc gaaaaaggcg ctggtcatca aggccgcgcg taagcccaag
     3121 ttcgcagtgc ggcgctacac ccgctgccag cgctgcgggc gtcccaaggc ggtctaccgc
     3181 aaattcggct tgtgccgaat ctgctttcgc cagatggcac accggggcga gctcccaggc
     3241 gtgagcaagt cgtcgtggtg agacgcttcg cggctcaccc tgtgagtagc gatgcgagct
     3301 gtagcaacca tcgccactca cagggcgcag ccattattcg ccgtaggccc gggagggaac
     3361 cacggcggga agggatcacg aggtcgccat gacaatgacc gacccgatcg cagacatgct
     3421 gacccgtctg cgcaacgcca actcggccta tcacgaccgg gtcgtgatgc cgcactccaa
     3481 gatcaaggcg aatatcgctg agatcctcca gcgagagggc tacatctcag gcttccacgc
     3541 cgaggaggca tcggtgggga agtctctggt ggtggaactg aagttcggcc cgaaccggga
     3601 gcgcagcatc gctggcctgc gccgggtctc caagcccggc ctgcgggtct acgccaagtc
     3661 cacctctttg cccaaggtgc tcggtggcct gggtgtggcg atcatctcca catccaccgg
     3721 gctgctcacc gatcggcagg ccgccaagaa gggcgtaggc ggggaagtcc tcgccttcgt
     3781 ctggtgagag gggagcagac cagatgtcgc gcatcggaaa gcagccgatc gccgtgccta
     3841 ccggagtcga tgtg
//
LOCUS       DASVXZ010000198         2668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1724691, whole genome shotgun sequence.
ACCESSION   DASVXZ010000198 DASVXZ010000000
VERSION     DASVXZ010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1724691"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..271)
                     /locus_tag="VF788_03895"
                     /pseudo
     CDS             complement(48..271)
                     /locus_tag="VF788_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558018.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(389..1552)
                     /locus_tag="VF788_03900"
     CDS             complement(389..1552)
                     /locus_tag="VF788_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX8933333.1"
                     /translation="MAGSGVGSDRPVGNGLVPISSGEVLGRVPVGLRVAAAIGWRLVV
                     VLITVAALAWVISRVQFIVIPVAVAVLLAALLAPAVRLLSRFRWVPRALATAVVVVSG
                     LAVLGGVLYGLVVAFLAGLPALQAQLGQSFSQIRDWLARSPLHLAVPQLNNLSASIVR
                     ALGSSQAAMTSGALGVASTVGEIAASVLLAIFTLIFFLYDGARIWEFVLQGIPQKGRD
                     RVNVAGRRAFAALVSYTRAVTLVAATDALVVGFGLWAIGVPLVVPLAVLVFFGAFIPF
                     VGAIVTGVIAVLIALVAKGLLAAVWVVIVLILVGELEGHVLQPLLLGRAVRLHPLAVV
                     LPVATGFILIGVIGALLAVPVVAVVDAGIRSLYQPNLPHPDTVDPLNPRSART"
     gene            2288..>2668
                     /locus_tag="VF788_03905"
     CDS             2288..>2668
                     /locus_tag="VF788_03905"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjD/YihY/BrkB family envelope integrity
                     protein"
                     /protein_id="HEX8933334.1"
                     /translation="MSRPDDNIAGGMRAKLDRLDSYQRRHPALGVPIAVARKFFEDES
                     INLAAVIAFWAFFSIFPLLLLFVTLLGYFLPPSLQGDVLRSAARFFPLLSTDSIGRLS
                     GQWWTLVVGILSALWSGSFVVIAIQ"
BASE COUNT          513 a          931 c          789 g          435 t
ORIGIN      
        1 taatgaagtg cgaccgcgga ggcctccggc gtgattcttt gcggacttta tgcgctagtg
       61 tttcggttct ctggctggcc gtggaccggt tttgggctgg cggtgacgat ccggatccgg
      121 gatttggcga gtagtttaaa cccatttagc ggcgacctcg cttgctcggc caggagggcg
      181 ccgacgagtc ggatcaccgc aggcgaccgg gaaagatccc gacgacatcg gtgcgtcggc
      241 ggatctcctt gtcgagccgc tcttggcgat cggtgcgccg ccactacatg ggacggttta
      301 cgagcggggt caccaacccc ttctgactct gcctgttgcc ctgcacactc tgcggcctgg
      361 tcactggttg cttctggtgc cccactcttt aggtgcgggc ggagcggggg ttgagcggat
      421 cgacggtgtc cgggtgggga aggtttggct ggtacaggga acggatccca gcgtccacaa
      481 cggcaaccac cgggacggcg agcagcgcgc cgatgacgcc gatgagtatg aaaccggtcg
      541 ctactgggag aaccaccgcc aaggggtgaa gccggaccgc ccggccaagc aggaggggtt
      601 gcagcacgtg gccctccaac tcaccgacca agatcagtac tatcaccacc cacaccgcag
      661 ccagcaagcc cttggcaacc aaggcgatca gcaccgcgat gacccccgtc acaatcgcgc
      721 caacgaacgg gatgaacgcg ccgaagaaca ccaacaccgc cagtggaacc accaacggca
      781 ccccgatcgc ccacaacccg aacccgacca ccagcgcgtc ggtggccgcc accagggtga
      841 ccgctctcgt gtaactgacc aaagctgcga aagcccgccg gccggccacg ttcactcggt
      901 cccggccctt ctggggaatt ccctgcagca cgaactccca aatccgcgcc ccgtcgtaga
      961 ggaagaagat cagagtgaag atggccagca gtacgctcgc tgcgatttcg cccacggtgc
     1021 tggccactcc cagcgccccc gaggtcatcg cggcctggct ggatcccaag gctcggacga
     1081 tgctggcgct caggttgttc aactgcggca ccgcaaggtg cagtggactg cgtgccagcc
     1141 agtccctgat ctgcgagaag ctctgcccca gctgggcctg aagagccggc agcccggcga
     1201 ggaaggccac caccagccca tagagcaccc cacccaggac agccagtcca ctcaccacga
     1261 ccaccgcggt agccagggcg cgggggaccc agcggaatcg ggacagcagg cgcaccgctg
     1321 gggccagtag ggcggccagc agcaccgcca ccgccactgg aatcacaatg aactgcaccc
     1381 ggctgatcac ccaggccagt gcggccaccg tgatcagtac caccaccagc cgccacccga
     1441 tcgcagccgc cacccgcaac ccgaccggaa cccgtcccag cacttctcca ctggagatag
     1501 gcaccaggcc gttgccgacc ggacgatccg agcccacccc tgacccagcc atcaccacac
     1561 ccctccccac cgacacccac atcagccaga atcccgtgcc agtcagcgat ccgctcgcgg
     1621 agacgacacc acgctggtgc gctcagccgc gcatcactgc tgagtgatgc accgtgcttt
     1681 accccaccca cagcgagaga tcgagccagc gcccgtgcca gatgcggcgg cgaccgacgc
     1741 agcacagcgg gagccacggg acaccaatcc tcccccccgc gaagacctca accttcgacc
     1801 gcaggtcaca ccctattcgc gctggatggc gggtcaaaag attcgaacct tggaaggcat
     1861 cagccgacag attttgcgca actggactac ctcgaagccg aacacctcct catagaaccg
     1921 gcgcgactcc tacgggttga tcgaggtgcc ggtccattcg caccccgcac cggtgagcaa
     1981 gatcgacccg tgagttcggt tggcgatcac ccggtccagt gccgtcccac tacctccggt
     2041 agcgacacgt acgaccttgg agccctggcc gcacgcctgc aggacccggt gacggtgttc
     2101 tccccacgtc ctgggtgtct acgctaggca ttgaagattc gggaagatgc gccaccatcg
     2161 actactagct tccccggtgc ctctgggacg ttcacagcct cgtcgctacg agccgcgacg
     2221 gggttaccca aatgggagat cgcacctgtc atgattgtct gcgggacttt tcttcaggag
     2281 ctgactgatg agtcgacccg acgacaatat cgccggtggg atgcgggcca agcttgatcg
     2341 attggactct tatcagcgac gacacccggc gctgggcgtg ccgatcgccg tggcccggaa
     2401 gtttttcgag gacgagtcga tcaatcttgc cgccgtgatc gccttctggg cgttcttctc
     2461 gatctttccg ctgctgctcc tctttgtcac cctgctcggc tacttcctgc cgcccagcct
     2521 gcaaggcgac gtgctgcgca gcgcagcccg gtttttcccg ctgctgagca cggactcgat
     2581 cggacgcctc agcggccagt ggtggacgct ggtggtcggc atcctcagcg cactgtggag
     2641 cggctccttt gtggtcatcg caatccag
//
LOCUS       DASVXZ010000199         5644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_290640, whole genome shotgun sequence.
ACCESSION   DASVXZ010000199 DASVXZ010000000
VERSION     DASVXZ010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5644
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290640"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VF788_03910"
     CDS             <1..467
                     /locus_tag="VF788_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEX8933335.1"
                     /translation="AVEVHPVGNWLPAGVATLADALRALVATTPEHGYLAVQAYLDRI
                     ADASAAVLRSELARRTHLQTTFGWGPRFLHSTGQYHKGGHQNGAFLQLTGAIGTDIPV
                     PGAGFALGELQRAQALGDAGVLAAHGRPVLRLHLLDRPAGLVSLMHAVQELQ"
     gene            542..2056
                     /gene="zwf"
                     /locus_tag="VF788_03915"
     CDS             542..2056
                     /gene="zwf"
                     /locus_tag="VF788_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020421293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEX8933336.1"
                     /translation="MNPLLDSRDKRLPRIAGPCGVVIFGVTGDLSRKKLMPAIYDLAN
                     RGLLPPGFSLVGFARRDWADENFADLMHDAVRDHARTEFREEVWARLSEGIRFVPGSF
                     DDDAAFDELASVVAELDRERGTGGNHAFYLSIPPAMFPVVLKQLARTGLAAQDDEHWR
                     RVVIEKPFGHDLRSARELNEIVNDVFPEESVYRIDHYLGKETVQNILALRFANQLYEP
                     IWNSHYVDHVQITMAEDIGLAGRAGYYDGIGAARDVIQNHLLQLLALTAMEEPLSFSP
                     EALRGEKIKVLSATKPMEPLEETTARGQYTAGWQGGTKVVGVLEEGGFRPDSTTETFA
                     AITLGVDTRRWAEVPFFLRTGKRLGRRVTEVAVVFKRAPHLPFEATMTEELGQNALVI
                     RVQPDEGVTIRFGSKVPGTAMEVRGVNMDFRYGAAFTESSPEAYERLLLDMLRGEPSL
                     FPVNAEVELSWAILDPILEHWAKQGKPESYPAGTWGPPSADQMIARAGRTWRRP"
     gene            2060..3448
                     /locus_tag="VF788_03920"
     CDS             2060..3448
                     /locus_tag="VF788_03920"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003904 - deoxyribodipyrimidine
                     photo-lyase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEX8933337.1"
                     /translation="MSVTIALFTRDLRVHDNPVLHAACNAATQVVPLFVLDTAILRGG
                     SISANRATFLTGALADLDAHLREQGGHLVVRTGDIVKGVERVVSELDAHEVHLAADVS
                     GYSQRREQALRERLLGHGCRLQVHAHTITVVEPGAVTPSGGGAQFAVFTPYYRRWLRA
                     QRRGLLEVPRRITVPPIATDPLPSPEDLCSGQRSPHLPPGGEAAGRRILSDWLAGPLG
                     DYEQAHDDLAADGTSRLSPYLHFGCISPTEAVHAAETVHAADGSTAGGQAFIRQLAWR
                     DFHHQVLAARPETVSVDYRTRHDRWRRDEKAAQAWRDGLTGYPIVDAGMRQLRAEGWM
                     HNRARLITASFFTKTLYLDWRIGARHFFDLLVDADVANNQLNWQWVAGTGTDTRPNRV
                     LNPLRQAQRYDPTGDYVRRYLPELRDVPGSAVHEPWKLDPHHRSRLNYPDPIIDLHEG
                     AERFRTARSDKR"
     gene            3523..4494
                     /gene="opcA"
                     /locus_tag="VF788_03925"
     CDS             3523..4494
                     /gene="opcA"
                     /locus_tag="VF788_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016333148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase assembly
                     protein OpcA"
                     /protein_id="HEX8933338.1"
                     /translation="MIIDLPSTTTAAVNHALIDVRERGGAVAVGRVLNLVIVTDDSAQ
                     VEQSIQAANAASMEHPCRVLVVARGLKRAGTRLDAQIRVGGDAGASEVLVLRLYGPLA
                     DHGDSVVVPLLLADCPVVTWWPGFAPAVPAADPIGTLAQRRITDAAAVPQPIKTLDSR
                     RTSYAAGDTDLAWSRLTPWRALLAAALDLPPYEEVQAVTVTGAVDNPSADLLAGWLRS
                     RLHIPVRRRTSPSGGGISSAVLERRSGPVELVRPDGKVGTLRQPGQPDRRVPLRRRPV
                     RECLAEELRRLDPDEIYHAALQAMTEVEGRRTGTAKGARPSEARRDQ"
     gene            4491..5264
                     /gene="pgl"
                     /locus_tag="VF788_03930"
     CDS             4491..5264
                     /gene="pgl"
                     /locus_tag="VF788_03930"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEX8933339.1"
                     /translation="MSRPDVVVHATAEVLATATAARLVTRIVDIQHSSGSASLVLTGG
                     RIGIAVLRELASTQAATALDWRRLDLYWGDERFLPSGHPERNETQAREALLDHVAVDP
                     ARVHPMGASDGPWGDDPDAAAQDCEELLLNQRRPEDRGPAPSFDICLLGMGEDGHVAS
                     VFPGSPAVYETERAVIGVRGSPKPPPTRITLTLPAIRCAAEVWLIVAGSEKAAAVMMT
                     LGGAGEVQVPAAGATGRRRTLWLLDRAAAGKLPKELLDR"
BASE COUNT          905 a         1907 c         1919 g          913 t
ORIGIN      
        1 gtgcggtcga ggtgcacccg gtcgggaatt ggctgccggc gggcgtcgcg actctcgccg
       61 acgcgctgcg ggcgctggtc gccaccaccc cggagcatgg ttacctggcg gtgcaggcgt
      121 acctggatcg gatcgccgac gcatcagcgg cggtgctccg cagcgaactg gcccgtcgca
      181 cccacctgca aaccacgttc ggttggggtc cccgcttcct gcactcaacc ggtcagtacc
      241 acaaaggcgg ccaccagaac ggggcgttcc tgcagctgac cggagcgatc ggcacggata
      301 tcccggttcc gggtgccggg ttcgccctgg gagagctgca acgagcccag gctttgggtg
      361 atgccggcgt gcttgccgca catggacgcc cggtattacg gcttcacctg ctggaccggc
      421 cagccgggct ggtgtcgctg atgcatgcgg tacaggagct ccagtgaccc gtgtcggcaa
      481 tcagacgacc gccggccccg ccggcaatca cgttgcctac cgcaggaccc cgaacgggtg
      541 gatgaatccc ctgctggaca gccgggataa acggctgccc aggatcgccg gaccgtgcgg
      601 tgtagtgatc ttcggggtca ccggagacct gtcccgcaag aagctgatgc cggcgatcta
      661 tgacctggcc aaccgcgggc tgctgccgcc cggcttttcg ttggtcgggt tcgcccgccg
      721 ggattgggcc gacgagaact ttgccgatct gatgcacgac gcggtgcgtg atcatgctcg
      781 gaccgagttc cgcgaggagg tgtgggccag gctgtcagaa ggtatccggt tcgttcccgg
      841 cagcttcgac gacgatgcgg ccttcgacga gctcgcatcg gtggtcgcgg agctcgatcg
      901 ggaacgtggc accggcggca accacgcttt ttacctgtcg atcccgccag cgatgttccc
      961 agtggtcctc aagcagcttg ctcgcacggg gttagcggcg caggacgacg agcactggcg
     1021 ccgggtcgtc atcgagaaac ccttcgggca tgatctgcgc agcgcccggg aactcaacga
     1081 gatcgtcaat gacgtcttcc ccgaagagtc ggtctaccgc atcgaccatt acctcggcaa
     1141 ggagaccgtg cagaacattc tcgcgttgcg ctttgccaac cagctctacg agccgatctg
     1201 gaacagccac tacgtggatc acgtacagat caccatggcc gaggacatcg ggttagccgg
     1261 ccgggctggt tactacgacg gcatcggtgc ggcccgcgat gtgatccaga atcacctgct
     1321 ccagctgctg gctctcaccg cgatggaaga accgctgtcc ttctcccccg aagcgttgcg
     1381 cggcgagaag atcaaagtgc tctcggccac caagccgatg gaaccgctgg aggagaccac
     1441 cgcgcggggt cagtacacag ccggttggca gggcggcacc aaggtcgtcg gggtgctgga
     1501 ggaaggcggt ttccgcccgg attccaccac cgagacattc gccgcgatca cgctgggcgt
     1561 ggacacccgg cggtgggccg aggtgccttt cttcctgcgc accggtaagc ggctgggccg
     1621 gcgggtcacc gaggtagcgg tggtcttcaa gcgggctccc catctgcctt tcgaggcgac
     1681 catgaccgag gagctgggac agaacgcgct agtgatccgg gttcagccgg acgagggcgt
     1741 caccatccgg ttcggctcta aggtgccggg aaccgcgatg gaggtgcgtg gcgtcaacat
     1801 ggatttccgg tacggtgcgg ccttcactga gtcctccccc gaggcctacg agcggctgct
     1861 gctggacatg cttcgcggtg agccgtcgtt gttcccggtc aacgcggagg ttgagctgtc
     1921 ctgggcgatc ctggatccga tacttgagca ctgggcgaaa cagggcaagc cagagtccta
     1981 cccagcgggc acctgggggc cgccttccgc agaccagatg atcgcccggg ccggccggac
     2041 ctggcgacgg ccgtagcgca tgagcgtgac gatcgctttg ttcacccgcg atctgcgggt
     2101 gcacgacaat cctgtcctgc acgccgcctg caacgccgcc acccaggtgg tgccgctgtt
     2161 cgtgctcgac acggcgatcc tgcgcggcgg ctccatatcg gcgaaccggg ccacgtttct
     2221 caccggcgcg ctggcggacc tggacgccca cttgcgggag cagggagggc atctcgtggt
     2281 gcgtaccggc gacattgtca agggagtcga gcgcgtcgtc tcggagctgg atgcccatga
     2341 ggtgcatctc gccgccgacg tcagcggtta cagccagcgc cgtgagcaag ccctgcgcga
     2401 acgcctccta ggccacggct gccggctgca ggtgcacgcc cacacgatca ccgtggtgga
     2461 accgggcgcg gtcactccct cgggaggagg cgctcagttc gcagtgttca ctccctacta
     2521 ccggcgttgg ctccgagcgc agcgcagagg cctgctcgag gtgccccgcc ggatcaccgt
     2581 gccgcccatc gccaccgacc cgctgcccag ccctgaagat ctgtgctctg gccagcgatc
     2641 gccgcacctg cctccgggcg gtgaagcggc cggacgacgc atcctgagcg actggctggc
     2701 cggcccgctc ggtgattacg agcaggcaca cgacgatctg gccgccgatg gcacctcccg
     2761 gctgtccccg tatctgcact tcggctgtat ctcgccaact gaggcggtcc acgccgccga
     2821 gacggtgcac gccgcggacg gatcgacggc aggcgggcaa gccttcatcc ggcaactggc
     2881 gtggcgcgat ttccatcacc aggtgctcgc tgcgcgcccc gagaccgtga gtgtcgacta
     2941 ccgcacccgt cacgaccggt ggcggcgtga tgaaaaagcc gcgcaggcct ggcgggatgg
     3001 cctcaccggc tacccgattg tcgacgcggg catgcggcag ctccgcgcgg agggctggat
     3061 gcacaaccgc gcccgcctga tcaccgcgag tttcttcacc aagacgctgt atctggactg
     3121 gcgcatcggc gcccggcatt tcttcgacct gctcgtggac gccgacgtag ccaacaacca
     3181 gctcaactgg cagtgggtcg ccggtaccgg caccgatacc cgacccaacc gggtcctcaa
     3241 ccccctacgg caggcgcagc gctacgaccc caccggtgac tacgtccgcc gctacctgcc
     3301 cgagctgcgg gacgtcccgg gctctgcggt gcacgagccc tggaagcttg acccacacca
     3361 ccggagccgc ctcaattacc ccgatcccat tatcgacctt cacgaaggtg cagaacgctt
     3421 ccggaccgcc cggagcgata agcgctgacc gctgtgaacg gctagcatgg ctccggtcgt
     3481 gcccggaggc gaacagacga tttcccttgc cggaggcgaa gagtgatcat tgatctgcct
     3541 tcgacgacga cagcggcggt gaaccacgcg ctgatcgacg tccgggagcg cggcggtgcg
     3601 gtggcggtgg gccgggtgct caatctggtg atcgtcaccg atgactccgc gcaggtggag
     3661 cagtcgatcc aggccgccaa cgcggcaagc atggagcatc cttgccgcgt gcttgtggtg
     3721 gcccggggac tcaagcgggc cgggacccgg ctggacgccc agatccgcgt cggtggtgac
     3781 gccggcgctt ccgaggtgct cgtgctgcgc ctatacggcc cgctggccga ccacggggac
     3841 agcgtggtgg taccgctgct gctcgcggac tgccccgtgg tcacgtggtg gcccggcttc
     3901 gccccggcgg ttcccgcggc agatcccatc gggacgctgg ctcagcgccg gatcactgat
     3961 gccgctgcag ttccccagcc catcaagaca cttgatagcc gacgcacgtc ctacgccgcc
     4021 ggggacaccg acctggcgtg gtcccggctc accccgtggc gggcgctcct cgccgcagct
     4081 ctggatctgc caccgtatga ggaggtccag gcggtcaccg tgaccggggc ggtggacaac
     4141 ccgtccgccg acctgctcgc cggctggttg cggtcccgcc tgcacatccc ggtccgccgg
     4201 cgcaccagcc cgtcaggtgg tgggatcagc tcagcggtgt tggaacgtcg atccggcccg
     4261 gtcgaattgg tccggcctga tgggaaagtg ggcaccctgc gccagccggg tcagccagat
     4321 cgccgggtgc cgttacgacg gcgtccggta cgcgagtgtc tcgctgagga actgcgcagg
     4381 ctcgatccgg atgagatcta ccacgccgcg ctgcaagcga tgaccgaggt tgagggccgt
     4441 cgcaccggca cggcgaaggg ggcccgaccc agcgaggcaa ggcgcgatca gtgagccgcc
     4501 cggatgtggt ggtgcacgcc accgcagagg tactcgccac tgccacagcc gcccggctcg
     4561 tcacacggat cgtggacatc cagcactcct cgggttccgc atcgctggtc ctcaccggtg
     4621 gacggatcgg gatcgcggtg ctccgggaac tggcgagcac gcaggccgcc accgcgctgg
     4681 actggcgaag gttggatctc tactggggag atgagcgctt cctgcctagt ggccacccgg
     4741 agcgcaacga gacccaggcc cgtgaggcac tcctggatca cgttgctgtg gaccccgctc
     4801 gggtgcaccc gatgggggcg tcggatggcc cctgggggga cgatccggac gccgccgcac
     4861 aggactgcga ggagctgctg ctgaaccagc ggcgacccga agaccgcggt ccggcaccgt
     4921 cgttcgacat ctgccttctc ggcatgggcg aggacggcca tgtcgcgtcg gtgttccccg
     4981 gctctccggc agtgtacgag accgagcgtg cggtgatcgg cgttcggggc agtcccaaac
     5041 cgcctcccac ccggatcacc ctgaccttgc cggctatccg gtgcgccgcc gaggtgtggt
     5101 tgatcgtggc ggggtcggag aaggcagccg ccgtgatgat gacgctgggc ggtgccggcg
     5161 aggtgcaggt acccgccgca ggcgcaacag gccgccgccg cacgctctgg ctgctggatc
     5221 gggccgcagc cggaaagctc cccaaggaac tcctcgaccg ttagcccttg ggcgaccgag
     5281 cgcgggctgg ccgctcacaa ccaactccca ggtcacccgc agcaggcgtt cacattcgtg
     5341 tggctgactc gcgttcgtcg atgccgggcc accatcgcct ggcacgatcc gccgaaggat
     5401 gtcgtggtga agccagtgat cgcgatacgc cggacgctga ccgagcgccg gctgatcgga
     5461 actggggtag tcctagtggc tggtctcgcg atcaccggat gggcctgggc cggatcgtcg
     5521 tcggctgctg ttccccggct gggcacggcg agcctaggca cgatacgacg acggtcacgg
     5581 caagtggcac gatcgcagcg gctcagcagg caagcctgaa cttcggggtc agtggccagg
     5641 tcac
//
LOCUS       DASVXZ010000200         2974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_380986, whole genome shotgun sequence.
ACCESSION   DASVXZ010000200 DASVXZ010000000
VERSION     DASVXZ010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380986"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VF788_03935"
     CDS             complement(<1..183)
                     /locus_tag="VF788_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933340.1"
                     /translation="MVAEDKRKREAAQAVTAARGGGGSRGVIVAIAIVVVLAVVVGVG
                     LWLQSRNKTALPQAIPV"
     gene            complement(183..713)
                     /locus_tag="VF788_03940"
     CDS             complement(183..713)
                     /locus_tag="VF788_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030416 - methylamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MauE/DoxX family redox-associated membrane
                     protein"
                     /protein_id="HEX8933341.1"
                     /translation="MLRLSRPVVDGLGTVVRLGLAAVFLVSGAIKAIDPGQTRVAVGA
                     YQLLTPDLVGPVATALPLVELAVGTLLLLGVITRWVAVASVALLLGLMAAVAQAWARG
                     LSIDCGCFGGGGAVAEGNTHYPQELARDAGILLLALWLVLRPRTALSVDGWLRTDQRI
                     SAGSSRSPGQMSRRDV"
     gene            845..1555
                     /locus_tag="VF788_03945"
     CDS             845..1555
                     /locus_tag="VF788_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010241383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEX8933342.1"
                     /translation="MSSEPGNEIGHVHRDVSGGWLRPAVFGAMDGLVTNIALIAGVGG
                     SGAGARVVVLAGVAGLVAGACSMALGEYASVETQNQQLQAEVAVEKEELRRHPKAEQT
                     ELVTSLVQMGLTRGTAKQVAEEVHANPALAIRVHINQELGVNPEDQPSPWVAAGSSFL
                     CFGIGALVPLVPYLLGFPLLFVGLAAGAWGLFLAGALTSRFTTRSWWLGGLRQIGFGA
                     IAAVATYLIGVLIGAGAG"
     gene            complement(1516..2775)
                     /locus_tag="VF788_03950"
     CDS             complement(1516..2775)
                     /locus_tag="VF788_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005443492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8933343.1"
                     /translation="MDEKLGQGSSSALRSVPRLPREVWVLVAVSFVIALGFGIVAPAL
                     PTFARSFNVSVTAASIVISAFAFMRLVFAPVSGKLVSALGERPVFIWGITVVGLSTGA
                     CAFAADYWQLLVLRSLGGVGSTMFTVSAVALLIRLTPPPLRGRSTSLWSSGFLLGSVS
                     GPLFGGGLIAISLRAPFVVYAVALFVAAAVAWFFLRRSTMFGVLPAAELPALTVRQAW
                     GHPAYRAALASSFATGWAVYGVRVALVPLFVVEVLHRAQSLAGVALSVFAAGTIAVLT
                     FSGRLVDALGRRLPMLVGLTVTGGATIWLGFTSGVPELLVAALLAGAGAGLITPAQGA
                     TVADVVGSQAKGGPVLAVAQMTSDVGAILGPIATGLLVDQLSYPAAFALTGGIALLAA
                     VVWLRTPETLPRQVPQPAPAPISTPMR"
BASE COUNT          564 a         1007 c         1005 g          398 t
ORIGIN      
        1 caccgggatc gcctgcggaa gcgccgtctt gttgcggctc tgcagccaga gcccaacccc
       61 gacgaccacg gcgagcacca cgacgatcgc gatcgccacg atcaccccac ggctgcctcc
      121 gccgccacga gctgccgtga ccgcctgcgc ggcttcccgc ttacgcttgt cctcggcgac
      181 cactacacgt ccctcctgct catctgaccg ggtgaccggc tcgaccccgc gctgatgcgc
      241 tgatccgtgc ggagccagcc gtcgacgctc agcgccgtcc ggggccgaag caccagccat
      301 aacgccagga gcaagatacc ggcgtcccga gccagctcct gcgggtagtg cgtattgccc
      361 tcggcaactg cccctccacc accgaagcac ccgcaatcga tggacaatcc gcgcgcccag
      421 gcctgcgcca ccgcagccat caggcccaac aataacgcta ccgaagcgac cgcgacccac
      481 cgggtgatca cgcccagcag cagcagcgtt cccactgcca gctcgaccag gggcaacgcg
      541 gtggcgaccg ggccgaccag gtccggcgtc agcagctggt aggcccccac tgcgacccgg
      601 gtctgccccg ggtcgatggc cttgatcgct ccagagacca ggaaaaccgc ggcgagtccc
      661 agccgcacca cggtgcccag cccgtcgacg acagggcggg agaggcgaag cacatgcgca
      721 gactagccaa tccttcctgg ctgaggtgag cctgcccatg gcgaggcgca cctgactact
      781 agcgcgaacc ggtgcgctcc gtaccgtgcc ggtgaggggt gttgctgagg cgcggtgatg
      841 agtgatgagc agcgagccgg gcaatgagat tgggcatgtg caccgggacg tgtcgggagg
      901 atggctccga ccggctgtgt tcggcgcgat ggacggtctc gtgacgaaca tcgcgttgat
      961 cgcgggagtg ggcggcagcg gggccggtgc tcgggtggtc gtgctggccg gggtggcggg
     1021 cctggtggcg ggcgcatgct cgatggcgct cggggaatac gcgtcagtgg agacacagaa
     1081 ccagcagctg caagccgagg tcgcggtgga gaaggaagag ctacgccgtc atccgaaggc
     1141 ggagcagacc gagctggtta cgtccttggt acagatgggc ctgacccgtg ggacagcgaa
     1201 gcaagtagcc gaggaagtgc acgccaaccc ggcactggcg atccgggtgc acatcaacca
     1261 ggagctcggt gtcaatccgg aggatcaacc ctctccctgg gtggccgccg ggtcatcgtt
     1321 tctgtgcttc gggataggtg cgctggtccc gctggtcccc tacctgctcg gttttcccct
     1381 gctgttcgtg ggtcttgcgg ccggcgcgtg gggattgttc ctggcaggag cgctcacgtc
     1441 gcggttcact acccgctcct ggtggctggg tgggctgcgc cagatcgggt tcggcgcgat
     1501 cgccgcggta gcgacctacc tcatcggcgt gctgatcggg gccggcgcag gctgagggac
     1561 ctggcgcggc agcgtctcgg gagtgcgcag ccagaccact gcggcgagca gggcgatgcc
     1621 gccggtcagg gcgaaagccg cggggtaaga cagctgatcg acgagtaggc cggtcgcgat
     1681 cgggccgaga atcgcgccga cgtcggaggt catctgggca acggctagca cggggccacc
     1741 cttggcctgc gagccgacca catcagccac ggtggcaccc tgggccggcg tgatcagccc
     1801 agcgcccgca ccggcgagaa gggcggccac cagtaactcc ggcaccccgc tggtgaatcc
     1861 caaccagatc gttgccccac cggtgacggt cagacccacc agcatcggca ggcggcgtcc
     1921 gagcgcatcc accagccgcc cagagaacgt cagcacggcg atggtgcccg cggcgaacac
     1981 cgagagcgcc acgcccgcca gtgactgcgc ccggtgcagc acctcgacga cgaacagtgg
     2041 caccagtgct acgcgcacgc catagaccgc ccaaccggtg gcgaaactcg aggccagtgc
     2101 cgcacggtag gccgggtgcc cccatgcctg gcgcactgtc aacgctggga gctcagcagc
     2161 cggtaagacc ccgaacatgg tagatcgccg caggaagaac cacgccacgg cagccgcgac
     2221 gaacagcgcc accgcgtaaa ccacaaaggg agcgcgcagt gagatcgcga tcagaccgcc
     2281 accgaacagg ggaccgctca cgctacccag caggaagccg ctggaccaca ggctggtgga
     2341 gcgtccgcgc agcggcggtg gggtaaggcg gatcaacagc gcgaccgccg agacggtgaa
     2401 catggtcgac ccgacaccgc ccagcgaccg caacaccagt agctgccagt agtccgcagc
     2461 aaaggcacag gcaccggttg acaggccgac cacggtgatg ccccagatga agaccgggcg
     2521 ctcgcccagc gccgagacca gcttgccgct gaccggggcg aacaccagcc gcatgaacgc
     2581 gaaagcgctg atcactatcg aggcggcggt gacgctgacg ttgaagctac gggcaaatgt
     2641 cggcaatgcg ggcgcgacaa ttccgaaacc cagagcgatc acgaaactga ccgcgacgag
     2701 cacccagacc tcgcgaggca gccgcggaac ggatcgcaac gccgaggacg atccctggcc
     2761 cagcttttcg tccaccggtt accaccttgt cgatcgcgat gctcaaggca ccactgtgct
     2821 caaccggcgg cgtgtaccag gacattcctg gcgatcagtg gcttatgcca cgttcctcgg
     2881 ctcggaggtg gacgagggtg aggcaggctc cggtgcggtg ggataaagca gcacccgcat
     2941 ggtggcgtcc tcgcgatcaa aaaacatgcg agtg
//
LOCUS       DASVXZ010000201         2641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_907482, whole genome shotgun sequence.
ACCESSION   DASVXZ010000201 DASVXZ010000000
VERSION     DASVXZ010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907482"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..470)
                     /locus_tag="VF788_03955"
     CDS             complement(<1..470)
                     /locus_tag="VF788_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8933344.1"
                     /translation="MTQTVSGGIEALRASMSGPMIGPVDPDYDKARKVWNADIDRRPV
                     VIAQCASPADVKTAIAFATEQGLEIAVRSGAHSMSGASVVDDGLVIDLSQLRQVTVNP
                     GAKRARVGGGALLADLDAATQAHGLAVPAGLISHTGVAGLTLGGGMGWLTRQAGT"
     gene            complement(929..1954)
                     /gene="argF"
                     /locus_tag="VF788_03960"
     CDS             complement(929..1954)
                     /gene="argF"
                     /locus_tag="VF788_03960"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX8933345.1"
                     /translation="MQGRSLLKDADLTPSDLRCLLALAGRLKVVRRSGREWPRLIGRV
                     VALIFEKPSTRTRCAFEVAAAHQGARVTYLDPASLHMGKLESLEDTARVLGRLYDGIG
                     YRAQSQASVEALGRHAEIPVWNALTDQWHPTQALADLLTIREHSPKPWSEISLAYLGD
                     GGGNVANSLRVAGALVGMAVRIVCPAALSGDPAVLAASERICRTTSGTVFDTEDIEEG
                     IRGVDFIYTDTWVRIGEPVERWRDRVTMLAPYRVDQNLLARTENPDVKYLHNLPAIHN
                     AQTTVGRQIYEETGLDAAEVADEVFKSEASIVFDQAENRMHAIKAVMVASLGTPDHDS
                     AQLSVAP"
BASE COUNT          484 a          857 c          812 g          488 t
ORIGIN      
        1 gtcccggcct ggcgcgtgag ccaccccatg ccgccgccga gggtgagccc cgcgacgccg
       61 gtgtggctga tcaggccagc gggtacggca aggccatggg cctgcgtggc ggcatcgagg
      121 tccgccaaca gcgcgccgcc accaacccgc gcccgcttcg cgcccggatt gaccgtcacc
      181 tgccggagct gactcagatc gatgaccagg ccatcgtcga caaccgaggc gccagacatg
      241 ctgtgtgcgc cggaccgcac cgcaatctcc agcccttgct cggttgcgaa cgcgatcgct
      301 gtcttgacat cagccggtga cgcgcattgg gcgatcacca ccggtcggcg gtcaatgtcc
      361 gcattccaca ccttgcgggc cttgtcatag tccgggtcga ccggccctat catcggccca
      421 ctcatcgacg cccgcagagc ttcaatgcca ccgctgaccg tctgcgtcat gagccggctc
      481 ctgcctacgc gacgatggct tgcgaatgat gccacccaca agtgagcgta ccgcctcgtg
      541 atatggcaat cgagtggcct agctatgggc caaacgcgct atgggccacc cggctgagta
      601 gcccgtggtg cccactgggc taccaattgt agtttgattc gccgtggtca acccgcatcc
      661 caacaagaat ttctgaacca aagggacgca actcagaact ccctgcggca gcccttagac
      721 ggcggtccac agaccttcag atctcgaaac tgggattcac aggtgatcat cgtcagtgaa
      781 ccgtcagcgg aaacgacgct acgagtccgt acggatcgat ccacactggc acatagccgc
      841 agctcaacgg caccccataa cacttgcagg tacgcagacg cacggccgat cagcgttcac
      901 acagcggtgc tcctacgcgc tccactgctc atggcgccac gctgagttgc gccgagtcat
      961 ggtccggagt tccgagactg gccaccatca ccgctttgat ggcgtgcatg cggttctctg
     1021 cctgatcgaa gacgatggat gcctcagatt tgaatacctc atcggccacc tcagctgcat
     1081 cgagccctgt ttcctcgtag atctggcgac cgactgttgt ctgggcatta tggatggcgg
     1141 gcaagttgtg cagatacttg acgtcgggat tttcagttcg cgccagcagg ttctggtcga
     1201 ctcgatacgg tgcaagcatg gtcactcggt cgcgccaccg ctcgacgggt tcgccgatcc
     1261 gcacccaggt atcggtatag ataaagtcga caccgcggat tccttcctcg atgtcttcgg
     1321 tgtcgaacac ggtgccgcta gtagtccgac agatccgctc cgacgcggcc aggacggccg
     1381 ggtcaccact tagggcggcc gggcagacga tacgcacggc cataccgacc agcgcaccgg
     1441 ccacgcgcag ggagttggcc acgttaccgc cgccgtcacc gaggtaggca agtgaaatct
     1501 ccgaccaggg tttgggtgaa tgttctcgta tcgtcagtag atcggcgagc gcttgggtgg
     1561 gatgccactg gtcggtcagc gcgttccaga ctggtatctc cgcatgacgt cccagggcct
     1621 ccacagacgc ctggctctgt gctcggtatc caatgccgtc atacaaccgt cccaagaccc
     1681 gtgccgtgtc ctcaagcgat tccagcttcc ccatatggag gctggcaggg tcaaggtagg
     1741 tgacccgcgc gccttgatgg gcagcggcga cttcgaaagc gcagcgggta cgggtcgagg
     1801 gcttctcgaa gatcagggca acgaccctac cgatcagccg aggccattcc cgcccggacc
     1861 ggcgaacgac cttcagccgc ccagccaacg ccagcaagca ccgtaagtcc gatggagtca
     1921 aatcggcgtc ttttagcaga ctccgcccct gcatgccgtc atcagtggaa gtttctcccc
     1981 ccaacttcac cgctgcccct ctccccatcg acccagcgtc gctggcccgc cagctgccag
     2041 ccaatcatct gcgagccgtg atcactagca gcgcgtacac cggcgcgcag ttcagcggcg
     2101 caccgtgacg gttccaagcg cacgacgtac ggcggacctt cgctctgcaa tgactcccag
     2161 gcagaccgtg gatcatggtg taggaggaag tgggtatgtt gtcgcgtcgg tgacatcgag
     2221 gcatcgcaga ggggggatgt tcatcgcgtg gggtgctcac cttgattcct gccgccggcc
     2281 tgctagcaga cgaactcacc gacgtgacgc ctcacccgct tggcttgtct gtctggcggc
     2341 aggctgacat ccgcgggcgg ttatcccggc agcgacgaac atcgtctcct atggtggtgc
     2401 tcgcagggag gcgcctggtc gtcgggaagg gttggacctg cgtaatcgca gaggtcaggc
     2461 gcgctgttgt ggcggtggct gggccaacga gggaatcgtt cggtatccat gcggaggagc
     2521 ggtgtagcgg atgggtacgg gcgctgttgt gctgatgacg gaccacggct cgggggaggg
     2581 cagccggatc ccgctggaga aggccgtcga acttctcacc ggggcgccgc cgttgtcggt
     2641 c
//
LOCUS       DASVXZ010000202         2892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_727910, whole genome shotgun sequence.
ACCESSION   DASVXZ010000202 DASVXZ010000000
VERSION     DASVXZ010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_727910"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..200
                     /locus_tag="VF788_03965"
                     /pseudo
     CDS             1..200
                     /locus_tag="VF788_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612357.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            332..1066
                     /locus_tag="VF788_03970"
     CDS             332..1066
                     /locus_tag="VF788_03970"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEX8933346.1"
                     /translation="MTRATVEVSVRGGMPAGVATAVVVAVLAMVNVAGHLLRGALWFG
                     PVVVVALVCFARWTGLSWSQLGLSKDQLGSGFRWGLGAIAVVATAYLAGVLLPPTRLA
                     FLDARYHLAVSGALLSAFVIIPVGTILVEEVAFRSVLWGMLARQFTTWRVLVASSVLF
                     GLWHILPSLHLASANQGVGHAVRGVGDLATVLVVVVTVVITAVGGAVAGALRHRSGSV
                     LASAGMHWATNALGVLFALLAWHLAG"
     gene            1079..2776
                     /locus_tag="VF788_03975"
     CDS             1079..2776
                     /locus_tag="VF788_03975"
                     /inference="COORDINATES: protein motif:HMM:NF021588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta-hydrolase family protein"
                     /protein_id="HEX8933347.1"
                     /translation="MTAFSAEVPIGKVPGATQPAGKVAAELVDAAERHLRYPRLRRYL
                     HRPHHVGVVLALVAFLCSLTPSLLPRSWEVQGIISGIEGAAAHATGVAISWLACRAGI
                     RPLRPPTQRRLWYGIGVLAAVAVPTTLWLSARWQSDIRRAVNMPAEGHYSYLGMFAIA
                     VAVAAGLVGLTRLFHDVYLVVMRRLLRSIPLLAAKLVASLLVVALVVGLFTGVVYRGL
                     IDSADNTFSKVDRGNDDGVVQPISSLRSGSPASLAPWTSLGREGRAFVSSGPSVTDIQ
                     RLTGRPAIESIRVYAGLSSAPTPQSQADVVLAELKRSGAFDRALLAVATTTGTGWVDP
                     TLADPVEYLYGGNTAIAAMQYSYLPSWISFLVDKDRARQAGRTLFTTVYRYWSTLPAA
                     RRPRLAAFGESLGAFGGSAAFSGLADLTARTDGAVFAGPPNSTELWRELTNKRVKGSP
                     EWLPIYGDGQTVQFAASAADLRTADGSLRHPRLVFLQHASDPIVWWSPELIWREPDWL
                     SEPRGPDMVPQMHWFPFLTFWQVTCDMIVGVKPPPGHGHHYGPEVPPAWAAVLHPPH"
BASE COUNT          380 a          924 c         1000 g          588 t
ORIGIN      
        1 cttgggccgc tcccgcggcg ggctgagcac caaggttcac ctggcggccg atgatcggtg
       61 ccgcctgatc gcgggggtca tcactgctgg gcagcgccat gacgtggtgg ccttccaacc
      121 tctgacgcgc gatccggatt caccgccgtg gccgcggtcg tccgcgcacc cgacctggga
      181 ccgtgcgcgc ggacaaggcc ccacaggaca ggcattgtgc cgatccaggc ggtggctggc
      241 tgccatactc ggtggatgca ggccgggttc ttaccctttg tcgagccgtc ttctgtgccg
      301 aatgagtgct tatccgatcg ttcggtcaga gatgacgcgc gccactgttg aggtgtcggt
      361 gcgcggcggc atgccggcag gtgtcgcgac tgctgtggtg gtggccgtgc tggcaatggt
      421 taacgtcgcc gggcatttac tgcgcggcgc gctgtggttc gggcctgtgg tggtcgtcgc
      481 gcttgtctgt tttgcccgct ggactgggtt gagctggtcg caacttggtc tgagcaaaga
      541 ccagctcggg tcgggattcc gatgggggct tggcgcgatc gctgtcgtgg ccactgccta
      601 tcttgccgga gtcctgttgc caccaacacg gctcgccttt ttggatgcgc ggtaccacct
      661 ggccgtatcc ggcgccctgc tgtccgcctt cgtgatcatc cccgtgggca cgatcctcgt
      721 tgaggaggtt gctttccggt cggtgctctg ggggatgctg gcccgacaat tcactacgtg
      781 gcgggtactc gtggcgtcgt cagttctgtt cggactgtgg cacatcttgc cgtcgctgca
      841 tctcgcctcg gctaatcagg gcgtagggca cgcggttcgc ggcgtgggtg acttggcaac
      901 cgtgctggtg gtcgtggtta cggtcgtcat taccgcggtc gggggggcgg tggctggtgc
      961 gctgcggcac cgcagtggca gcgtgctggc cagcgcgggg atgcactggg cgaccaatgc
     1021 gcttggcgta ctgttcgccc tgcttgcctg gcacttagct ggctgaacag gcctgatcgt
     1081 gactgccttt agcgccgagg ttcccatcgg aaaggttccc ggcgcaacgc agcccgccgg
     1141 caaggtcgcc gcagagctgg tcgatgctgc tgaaaggcac ctgcgctatc cgcggcttcg
     1201 ccgttacctg caccgtcccc accatgtcgg tgttgtcctg gctctggttg cgtttctgtg
     1261 ttcgctgacc ccgtcgctgc tgccccggtc gtgggaggtg caggggatca tttccggtat
     1321 tgagggcgct gctgcgcatg caaccggggt ggcgatctcg tggctggcct gccgcgctgg
     1381 gatccggccg ctgcgcccgc cgacgcagcg gcggctgtgg tacggcatcg gggtcttagc
     1441 ggcagtggcg gtgccgacta ccttgtggct gagcgcacgc tggcaaagcg acatacggcg
     1501 cgcggtgaac atgccggccg agggtcacta ctcgtatctg gggatgttcg ccatcgcagt
     1561 ggcggtggcc gctgggctgg tcggcctgac ccggttgttc catgacgtct acctcgtggt
     1621 gatgcgtcgc ctgctgcggt ccatcccgct gctggccgcg aagctcgtgg cgtcgctgtt
     1681 ggtggtcgca ctggtcgttg gtctattcac cggtgtggtc taccgcgggt tgattgattc
     1741 tgctgacaat acgttttcca aggtggaccg tggcaacgac gatggcgtcg tgcaacccat
     1801 ctcgtcactg cgatcgggca gccccgcctc cttggcgccc tggacctcac tgggccgcga
     1861 agggcgcgcg ttcgtgtcgt caggacccag cgtcaccgat atccagcggc tgaccggccg
     1921 gcctgcgatc gaatcgatcc gggtctacgc cggcctgtcc tctgcgccca cgccgcagag
     1981 tcaggccgac gtggtgctcg ccgagttgaa gcgcagcggc gcgtttgatc gggcgttgct
     2041 ggctgtcgcg actacgacag ggaccggctg ggtggacccg acgctggccg atcccgttga
     2101 gtacctctac ggcgggaaca ccgcgatcgc tgccatgcag tactcctact tgccgagctg
     2161 gatctccttc ctggtcgaca aggacagagc ccgccaggct gggcgcacgc tgttcaccac
     2221 ggtctaccgc tactggtcga ctttgcccgc agcgcgccgg ccacggctgg cggcttttgg
     2281 cgagagcctc ggggccttcg gtggcagtgc ggctttctcc ggccttgccg acctcacggc
     2341 gcgcaccgac ggcgcggtgt tcgccgggcc gcccaacagc accgaactat ggcgcgagct
     2401 caccaacaag cgcgtcaaag gcagcccgga atggctgccc atctacggtg atgggcagac
     2461 ggtacagttc gccgcctcgg ctgccgacct tcggacagcc gacggctcgc tgcgccatcc
     2521 ccggctcgtg ttcctgcagc acgcctcaga ccccatcgtg tggtggtcgc cggagctcat
     2581 ctggcgcgag cccgactggc tgagcgagcc acgcgggccc gacatggtgc cgcagatgca
     2641 ctggttcccg ttcctgacct tctggcaggt cacctgtgac atgatcgttg gcgtcaagcc
     2701 gccgcccggg cacgggcacc actatggccc cgaggtaccc cccgcatggg cagccgtcct
     2761 gcacccaccg cactagggtc atcgcctgga gtgggtacgg gtgtcgcgcg gtcgcagggg
     2821 cagagaaggg tatgcggttg agcgcagaga atgttttagt cgtcactgtt gaccaggcag
     2881 cagccccgca ag
//
LOCUS       DASVXZ010000203         7205 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1724992, whole genome shotgun sequence.
ACCESSION   DASVXZ010000203 DASVXZ010000000
VERSION     DASVXZ010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7205
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1724992"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1287
                     /locus_tag="VF788_03980"
     CDS             <1..1287
                     /locus_tag="VF788_03980"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX8933348.1"
                     /translation="LARAMDTVFPGSLVGLRLPVTVLSAVGVMVAALIAREFGARRRA
                     QVLTAGAYAMGTLVGGHTLNTATVDMLVWTLATWLLVRWVRLRDDRLLLALGGLTAIA
                     LQNKWLIVAFWLAVGVSVLVVGPRELLRRPALWLGAAIATLVTLPALFWQAHHGWPQL
                     TVAQAIANDEFLGGRLVRLAFLPLALASAGILLGAALMCYGLWRLLRSPELRPYRFLG
                     WTFLGLIVVFLITGGRYYYVAGLFAVCWAAGAVELQRREPACWWRWVLSWPVYVLSAV
                     IALTMLPVLPASWPTPAKLGSLLMLGWPEETDTVTGAYRALPPASQHNTVVVAEWYWD
                     AAAIDRFGPARGLPQVYSAHRGYWYFGGPPEDAGTVLFVGSDPASLGRFFTEVHQVAT
                     VTTGPMMNLFSRPTPVWFCSGQRAPWSRLWPQLRHL"
     gene            1526..1912
                     /locus_tag="VF788_03985"
     CDS             1526..1912
                     /locus_tag="VF788_03985"
                     /inference="COORDINATES: protein motif:HMM:NF017880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF952 domain-containing protein"
                     /protein_id="HEX8933349.1"
                     /translation="MDSGLLLHLCTPATWRMALGAGSVAPPSLLNEGFVHLSTPTQVQ
                     LPANARFPGRLDLLALVIDLARLPAELRFEPAPDSPADLRFRITTGRFLLMRWWQSCP
                     TSQDRTGASPIWSASPPPETSQLGFA"
     gene            1909..2040
                     /locus_tag="VF788_03990"
     CDS             1909..2040
                     /locus_tag="VF788_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933350.1"
                     /translation="MINRALALRRAAAVVPVDGGSAVLDPRFPASYEHNTLWVEGPK"
     gene            2051..2659
                     /locus_tag="VF788_03995"
     CDS             2051..2659
                     /locus_tag="VF788_03995"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8933351.1"
                     /translation="MAAEADRVLGGAALIHRRAVLDDPATAIALASRGWNVQELRLMI
                     YGGTGMADRSTRVVAVTQEIVSRLWERSWRRELPHLDDDSVRQLVDRETVADAVLRVV
                     DLAVLDGCGEPIASTQLRIDGATAAIKAVMTDPAHRQVGLARTLMLNAIGRARAAGCD
                     VVFLAAAADDWPHRWYTRLGFTDVGTRFEATRSPRWIDTAQD"
     gene            2683..3504
                     /locus_tag="VF788_04000"
     CDS             2683..3504
                     /locus_tag="VF788_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015499 - formate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015724 - formate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEX8933352.1"
                     /translation="MSDRSATTPAIPQEDTEETFDRLVDEGRQRLGRSWSGLLATGFL
                     GGLDVGVGVLALLLIEQATHSVLLGGLGLSIGFIALTLARSELFTEDFLIPVTAVVAK
                     TATPLALARLWTMTTLTNLAGGWVITALVMAGFPALRATALEAGRFYIELGITWKAFA
                     LALVGGMLITLMTHLQHSTESDGVRLVPAIIIGFLLGAGKVNHAIVGSLICFAALQVG
                     APFGYADWLGLFAFGVLGNLIGGLGLVTLVRLLQVPHKVLAEREDDTSPTKRKVA"
     gene            complement(3501..4022)
                     /locus_tag="VF788_04005"
     CDS             complement(3501..4022)
                     /locus_tag="VF788_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933353.1"
                     /translation="MINMIEVADQGSVLTYTFEDLMRYHGPGSPGGVAHALKVMERVL
                     PQLEPGGLVERHEIEVDTAFAGPGARDAFEMVTRAVTEGRYAVHDALARAELGPTRER
                     FVFRLGYRGRRVTVFLREGFVSEEFIALARMPQRNEQQESHLTVLKREMADLLLATPA
                     AEVYDVEGAAGAI"
     gene            4091..4690
                     /locus_tag="VF788_04010"
     CDS             4091..4690
                     /locus_tag="VF788_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933354.1"
                     /translation="MTRWRFEGEIAAFGTSAGHRIVLGRWPVSPFGPISDVMLETPDG
                     MRLLIAPRDEVADFIAGTYRFDSVDVTPVEMIRQPGRLQVAAGQLRADLTIGRRGWLG
                     LLLRAVPRAVATAPSWATLIDPLVRTALPGVRTRGSAGCGRREWYGARDLHPLVSVTA
                     RWQGTDLGAMADVRPPVRFGFGSTPRQPSIVHLTTTVQL"
     gene            4852..6762
                     /locus_tag="VF788_04015"
     CDS             4852..6762
                     /locus_tag="VF788_04015"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEX8933355.1"
                     /translation="MGRRLALLLSLLSVLVPVSVLAADGLAQASGAHATQTITLTVDA
                     TEAPRKLFHAREVIPVSPGPLTLYYPQWIPGEHGPTGPINNLSGLTFTVNGKPLPWRR
                     DPVDMYAFHLDVLQGATAVEASLEFLAPTFAGGFTSGSSTTSHLAVFSWNWLLLSPQV
                     TQADDLLVNASVRLPTGWKFSTGLPIDRESGDEVTFRTANLTTLIDSPVLAGEHFRAI
                     PLSTANPAVEMDIAADSPAALQPSQQFTDAMRKLVEEARALFGAEHYEHYNFLFTLSD
                     RVAHFGLEHHQSNDSRVAERALIDETQGRLARGVLSHEYVHSWNGKYRRAAGLATPNP
                     QTPMQGELLWVYEGLTQYYGNVLAVRSGLWTPEQYADTLAQAAASLDHTPGRLWRPLI
                     DTAVAAQLLYQAPSEWSTERRGTDFYNEGWLLWLDTDTLIRQLTSGQRSLDDFCRRFH
                     GGQSGPPSVKPYTVEDVVATLNEIAPYGWRTFLNQRLYTTDAHAPLGGIDRGGWRLVY
                     DTVQGQRIKDLESARKQVEMGYSLGLRLNDAGLISDVIPGMPAANAKLGPGMTVVAVD
                     GKKFSPDALRDAVSAAKTSNKPIQLLVNNEDTLINYPIDYHGGEQYPHLVRNNAKTDV
                     LSQTIAPLTPRR"
     gene            6770..>7205
                     /locus_tag="VF788_04020"
     CDS             6770..>7205
                     /locus_tag="VF788_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933356.1"
                     /translation="MPQIPYNRSYKSLFRPGKTDDFFQIGPISRDEALCAEMSRLAYV
                     TEEERLRTYLARATFTLATAIGYGEPGMQVFVATSNDAEDPIAVTAFRGTEGDDPTDL
                     FADVKFRTVDWDGAGKVNEGFRDEFAEVPVVRDRTTLIPAGTR"
BASE COUNT         1181 a         2379 c         2334 g         1311 t
ORIGIN      
        1 ctggcgcgcg cgatggatac cgtctttccc ggctctctgg tcgggttacg gttgccggta
       61 acggtgctga gcgcggtagg cgtgatggtg gccgcgctga ttgccaggga gttcggtgcg
      121 cggcgtcgag cgcaggtgct caccgcgggg gcgtatgcga tggggacgct ggttggtggt
      181 catacgctca acaccgccac agtggatatg ctcgtgtgga cgctagcgac atggctgctg
      241 gtgcggtggg tgcggcttcg cgacgaccga ttgttactcg ccctcggtgg ccttactgct
      301 atcgcattgc agaacaagtg gctgatagtc gccttttggc tcgccgttgg tgtcagtgtg
      361 ctcgtcgtgg gcccacggga gctactgcgc cggccagcac tgtggctcgg ggcagcaatc
      421 gcaacgctcg tgacgctacc tgcactgttt tggcaggctc atcacggatg gccacagctg
      481 acggtggcgc aggccatcgc caatgacgaa ttcttaggcg gccggctcgt gcggctggcg
      541 tttctaccgc tggcattggc aagcgccggg atcctgctcg gagcggcgct aatgtgttac
      601 ggcctatggc gactactgcg ctcaccggag ctgcgcccct accggtttct cgggtggacg
      661 tttctcgggc tcatcgtggt cttcctcatc accgggggtc gttactatta cgtggcgggg
      721 ctgttcgcgg tgtgctgggc cgctggcgcg gtggagcttc aacggcggga gccagcgtgc
      781 tggtggcggt gggtgctgag ctggccggtc tatgttctct cagcggtcat cgcgctcaca
      841 atgctgccgg tgttgcctgc ctcatggcca actccagcaa agctggggtc gctgctaatg
      901 cttggctggc cggaggagac ggatacggtg accggtgcct accgggcgct accgccagca
      961 tcccagcaca acaccgtggt cgttgccgaa tggtactggg acgccgctgc catcgaccga
     1021 ttcggcccag cacgcggatt gccgcaggtc tacagcgcgc atcgcggcta ctggtatttc
     1081 gggggaccgc ccgaagatgc tggcaccgtt ctctttgttg ggtccgatcc cgcctcactg
     1141 ggtcggtttt tcactgaggt acaccaggtg gccaccgtca ccactggtcc catgatgaac
     1201 ctgttctcgc ggcccacacc tgtctggttc tgctctggcc agcgggcacc gtggtcacgt
     1261 ctctggcccc agcttcgtca cctctgacag cacccctgga tgggcgcggt gtatcacgag
     1321 ccggctgagc cgtgaccggc tgttcaacaa tggcgcgacg cggcggcgaa gttcctcgat
     1381 acttggaacc agggggtcag cattcagccg gaaccgacag tggcaggagg atcacgggga
     1441 gttggtgtga tcgtcgacga tggcgagccg tggggtcggt gtgggtattc accacatctg
     1501 cggggaacac cgggaagatt cgcccatgga ttccgggctc ctgctacacc tgtgcacgcc
     1561 agcgacgtgg cggatggcgc tgggcgccgg cagcgtggcg ccgccgtcgc tgctcaatga
     1621 aggctttgtg cacctgtcaa cgccgactca ggttcagtta ccggccaacg cgcggttccc
     1681 ggggcgcctg gatctcctcg cgttggtcat cgacctggcg aggctaccag cagaactccg
     1741 cttcgaacct gccccggact cccccgctga cctgcgcttc cgcatcacta cgggccggtt
     1801 cctactgatg cggtggtggc agtcgtgccc taccagccag gatcggacgg gtgcttcgcc
     1861 gatttggtcg gcctccccgc ccccggagac gtcgcagctc gggttcgcgt gatcaatcga
     1921 gccctggcgc tgcggcgcgc cgccgctgtg gtgccggtgg acggcggaag cgcggtgctc
     1981 gatccgaggt tccccgcgtc atacgaacac aacacgctgt gggtcgaggg gccgaagtga
     2041 tgcggccact gtggccgctg aagctgaccg ggtactcggc ggcgccgccc tcattcatcg
     2101 gcgggccgtg ctcgatgacc ccgccacggc gatcgcgctg gccagtcgcg ggtggaacgt
     2161 gcaggagtta cgcctgatga tctacggcgg aacgggtatg gcggacagat ccacccgcgt
     2221 ggtggccgtc acgcaggaga tcgtcagccg gctctgggag cggtcctggc gccgcgagct
     2281 gccccacctt gacgatgact cggtgcgcca gctcgtcgat cgcgagaccg tcgccgatgc
     2341 ggtgctgcgc gtcgtggatc tcgctgtgct tgacggctgc ggtgagccga tcgcgtcgac
     2401 gcagctgcgc atcgatggcg ccacggcagc gatcaaggcc gtgatgaccg acccggcgca
     2461 ccggcaggtc ggcctggccc gaacgttgat gcttaacgcg atcgggcggg cccgagcggc
     2521 cggatgcgat gtcgtgttcc tggccgccgc ggccgacgac tggccgcacc gctggtacac
     2581 ccgtctcgga ttcaccgatg tcggcacccg cttcgaggcg acccgctcgc cgcgttggat
     2641 tgacaccgcg caggattgat gccgcggccc tagcatcagg ccatgagtga tcgctccgcc
     2701 accacaccgg ccatcccgca ggaggacacc gaggagactt tcgaccggct ggtggacgag
     2761 ggcaggcaac gtcttggccg ttcctggtcc gggctgctcg cgaccggctt tctcggaggc
     2821 ctggacgtag gggtgggtgt gctggcattg ctgttgatcg agcaggccac ccacagcgtc
     2881 ctgctcggcg gtctcgggtt gtcaatcggt ttcatcgcgc tgaccctggc gcgtagtgag
     2941 ctattcaccg aggactttct tattccggtg acggcggtgg tggccaagac tgccaccccc
     3001 ttagcactcg cgcggctctg gacgatgaca acgttgacca atttagccgg cggatgggtc
     3061 atcactgcct tggtcatggc cggtttcccc gcactccgtg ccaccgccct cgaagcggga
     3121 cggttctaca tcgaactggg catcacgtgg aaggccttcg cgctggcgct ggtcggtggg
     3181 atgttaatca cgctgatgac ccacctgcaa cactccacgg agtccgacgg ggtgcgcctg
     3241 gtgccggcaa ttatcatagg atttctgctg ggcgcgggca aggtcaatca cgcgatcgtc
     3301 ggatcgctga tctgctttgc ggcattgcag gtcggggcgc cgttcggcta tgccgattgg
     3361 ttgggactgt tcgccttcgg cgtactaggc aacctgatcg gtggcctcgg gctggtcacc
     3421 ctggtccgcc tgctgcaagt cccgcacaaa gtgctggccg agcgcgaaga tgacaccagc
     3481 ccgaccaagc gaaaggttgc ctaaatggcg ccggcagcgc cctcgacatc gtagacctca
     3541 gccgccggag ttgccagcag caggtcagcc atctcgcgtt tcaggacggt caggtggctc
     3601 tcttgctgct cgttgcgctg cggcatacgc gccaacgcga tgaactcctc acttacgaat
     3661 ccctcgcgga ggaacaccgt cacgcggcgg ccccggtaac cgagccggaa aacgaaacgc
     3721 tcgcgggtcg gccccagttc agcacgcgcc agtgcatcgt ggacggcata gcgtccctcg
     3781 gtcaccgcac gggtgaccat ttcgaacgcg tcacgggcac ccgggcccgc aaacgccgtg
     3841 tccacctcga tctcgtggcg ctccaccagg ccacccggct ccagctgcgg cagcactcgt
     3901 tccatcacct tcaacgcgtg ggccacgccg ccaggggaac ctgggccgtg gtaacgcatg
     3961 aggtcctcga atgtataggt cagcacgctg ccctggtccg ccacctcgat catgttgatc
     4021 acctgagctc cctcccggct tcgtatgtca ccgcactatc ggcatgtcca gacctggaat
     4081 catcgggctg gtgacgcgct ggcgattcga aggtgagatc gctgccttcg gcacgtccgc
     4141 gggacaccgt atcgtcctcg ggcggtggcc ggtctcgccg ttcggcccga tcagcgacgt
     4201 catgctcgag acacccgatg gcatgcggct gctgatcgct ccgcgcgacg aggtcgccga
     4261 tttcatcgcc ggcacctacc gcttcgattc cgtcgatgtc acaccggtcg agatgatccg
     4321 ccagccgggg cggctgcagg tggcggccgg gcagttgcga gccgacctga ccatcgggcg
     4381 acggggctgg ctcgggctgc tcctgcgagc cgtgccccgc gcggtcgcca ccgcgccttc
     4441 gtgggccacg ctgatcgacc cgctggtccg aacggcgctg cctggcgtgc ggacccgcgg
     4501 cagcgcaggg tgcgggcgaa gggagtggta cggagcccga gatcttcacc cactggtctc
     4561 cgtcaccgct cgctggcagg gcacggacct cggagccatg gccgacgtcc gtccgccggt
     4621 ccggttcggc ttcggctcca cacctcgcca gccctccatc gtgcacctca ccacgacggt
     4681 ccaactgtga cctcatcaac cgcgacatgg agacatatcg gggatgcggt tcgggcaccg
     4741 acacaccggg gcgacgcatg agcactgctg cgcgatgccc cgcataggat caacgacgag
     4801 cctgcgccag ctggcccgat caccctgatc cgggatacac cgggggaact catgggcaga
     4861 agacttgcgc tgctgttatc cctgctctcg gttctcgtcc cggtctccgt gctcgccgct
     4921 gacgggctcg cccaggcgag cggagcgcac gccacccaga ccatcacgct tacggtcgac
     4981 gccaccgagg ccccgcgcaa gctcttccac gcccgggagg tgataccggt cagcccaggc
     5041 ccgctcacgc tgtactaccc gcaatggata ccgggcgagc acggacccac tggaccgatc
     5101 aacaacctat cggggctgac attcacggtg aacggaaagc ccctcccctg gcggcgcgac
     5161 cccgttgaca tgtatgcctt ccatctcgac gtgctgcagg gcgccaccgc tgtggaagcc
     5221 agccttgagt tcttggcacc gaccttcgca ggtggcttca catcaggttc ctcgactacc
     5281 tcgcatctcg ctgtcttctc ctggaactgg cttctgctct ccccgcaggt gacgcaggct
     5341 gacgacctcc tcgtcaatgc ctccgttcgg ctgccaacgg gctggaaatt cagtacgggg
     5401 ctgccgatag atcgggagtc gggggacgag gtgacattcc ggactgccaa tctcacgaca
     5461 ctcatagatt caccagtgct ggcgggcgag cacttccgcg ctatcccgct ctcgaccgcg
     5521 aacccggcgg tcgagatgga catcgcggcc gacagccccg ccgcgctcca accgagccag
     5581 cagttcaccg atgccatgcg gaagctcgtc gaagaggcga gagcgctttt tggtgccgag
     5641 cactacgagc actacaactt tctcttcact ctgagcgacc gggtggcgca cttcgggctc
     5701 gagcaccacc aatcgaacga cagccgcgtc gctgagcggg cgctgatcga cgagacgcag
     5761 ggacggcttg cgcgtggtgt gctctcgcac gaatacgtcc attcctggaa cggcaagtac
     5821 cgccgggccg ccgggctggc gacgcccaac ccccagacgc cgatgcaggg cgagctgctc
     5881 tgggtctacg aggggctgac gcagtattac ggcaacgtgc tcgcagtgcg cagtggactc
     5941 tggacgccgg aacagtatgc cgacacgctg gctcaggccg ccgccagcct ggaccacaca
     6001 cccggtcggc tctggcgccc gttgatcgac acggccgtcg cggcacagct tctctaccag
     6061 gccccctcgg aatggagcac cgagcggcgc ggcaccgatt tctacaacga gggttggctc
     6121 ctctggctcg ataccgacac gctgatccgc cagctcacgt cagggcaacg ctcactcgac
     6181 gacttctgcc gccgcttcca cggcgggcag tcggggccac cgtcagtcaa gccgtacacc
     6241 gtcgaggatg tggtggcgac gctcaacgag atcgcgccct atggctggcg gacgtttctc
     6301 aaccagcgcc tctacacgac cgatgcccac gctccgctcg gcggtatcga tcgcggcggt
     6361 tggcggctag tctacgacac cgtgcagggc cagcggatca aggatctgga atcggcccgg
     6421 aagcaagtcg agatgggtta ctcgctcggc ctccggctca acgacgcggg cctcatcagc
     6481 gacgtgatcc cggggatgcc cgcggcaaac gcgaaactcg gccccggtat gaccgtggtc
     6541 gccgttgacg gcaagaagtt ctcgcccgac gcgctacgtg acgcggtgag cgcggcaaag
     6601 acgtccaaca aaccgattca gctgctcgtc aacaacgagg acactctcat caactatccg
     6661 atcgactacc acggcggcga gcagtacccg cacctcgtgc ggaacaacgc caagaccgac
     6721 gtgctcagcc agacgatcgc gccgctcacc ccgagacggt gacgccgcga tgcctcagat
     6781 tccctacaat cggtcataca aatcgttatt caggcccgga aaaactgatg acttctttca
     6841 aatcggcccg atttcgcggg acgaggcact gtgcgccgaa atgtcgcgac tagcgtacgt
     6901 gacagaagag gagcgactca ggacttacct cgcgcgcgct accttcacgc tggcgacagc
     6961 gatcggctac ggtgagcccg gaatgcaggt attcgtcgcg acgtcgaacg acgccgagga
     7021 tccgattgca gtcaccgcgt ttcgcggcac cgagggggac gatcccaccg atctgtttgc
     7081 tgacgtgaaa ttcaggacgg ttgattggga cggcgccgga aaggtgaacg aagggttccg
     7141 cgatgagttt gcggaggttc ctgtggtgcg ggaccgcacc acgctcattc cagccggcac
     7201 acgcg
//
LOCUS       DASVXZ010000204         5938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1187710, whole genome shotgun sequence.
ACCESSION   DASVXZ010000204 DASVXZ010000000
VERSION     DASVXZ010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5938
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1187710"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1281
                     /locus_tag="VF788_04025"
     CDS             <1..1281
                     /locus_tag="VF788_04025"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HEX8933357.1"
                     /translation="LTRAGALRLAPALKRNTLVGGVHYYDAITDDARHTMTVARTAAQ
                     YGAAVRSSTQVVGFLREADRICGVRVRDCETGDEADVEVHVVLNCTGVWTDEIQRLSG
                     GRGRFRIRPSKGVHIVVSRDRIVSESGLILRTATSVLFVIPWRNHWIIGTTDTGWNLD
                     LAHPAATRADIDYLLDTVNSVLATPLNDADIEGVYAGLRPLLVGESEETSRLSREHAV
                     ARVAPGLVAIAGGKYTTYRVMAADAVDAAVPDLPGRVAPSITDKVPLLGADGYHALVN
                     QAETLATRYGLHPYRLRHLLDRYGSSVHQLLALAADRPDLLAPVREAPDYLRVEVVHA
                     ATHEGALHLEDVLTRRTRISIEYPHRGEACAVDVADLMGEVLNWTVAARDREVQLYLA
                     RVAAERESQREPDDSTADARRAAAPDPRLLVPVS"
     gene            1797..2723
                     /locus_tag="VF788_04030"
     CDS             1797..2723
                     /locus_tag="VF788_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933358.1"
                     /translation="MQFVPVQLTWMVLGLAILVIVAIIASPNLLEIYNSQKDFVVGSL
                     FALVGFLFGKAFSRTHEQKALELIRDRTTPQVAAALSREIKSMLHDRGAFEELSVLER
                     NVNAAAGRLLEYFDSQAAKLDFYRDSPPLTVALDDLDHAAANVARLRSRMEGMRSTSD
                     SATNEIGPAFASIHRDLHESNRRRIELYEHLKSRPGRNIDGDSWAILGVMTSDILKAE
                     RTLALLRTGCFAGSAGEHVSQIIGYLTAALARAEEFRESMETEGVAMPELFDVMTSDV
                     HKALERISTLTSQVPGTRPEPANVVRDDPGLL"
     gene            2954..4132
                     /locus_tag="VF788_04035"
     CDS             2954..4132
                     /locus_tag="VF788_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015801951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEX8933359.1"
                     /translation="MKPTSRGLDWSAAAVLVAGVSAVLCGLLPSAAADAVVIRILPLL
                     GFLTSVIVLAELTGKAEVFDVVASQLARWAAGNYLALFGLCVVFASATTIFLNLDTTA
                     VLLTPVMLATAAKADIPGMPLAMLTVWLANAASLLLPVSNLTNLLASDRVNLSPTDFA
                     IRMAAPQAAAIIATGACLWLFYWRRGRRGNKRYTVPTLHVARDRPLFGIAAVVCPTFA
                     LLVLVGVPLVISSLICAGVLVVAFLVRDRSVFAWRMIPFRLLAFVTGLFLVVQTIDRY
                     GLGRLFGGVVGVDAGVEGVTKVAALGVGLSNAINNLPAYVVGELVVANTDQLLALLVA
                     TNVSPLITPWASLAIIIWYERCQSAGVRIGWGRFAMTGAVTVVVTVIAAEGALLVSGM
                     "
     gene            complement(4215..>5938)
                     /locus_tag="VF788_04040"
     CDS             complement(4215..>5938)
                     /locus_tag="VF788_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8933360.1"
                     /translation="GEIAVRVIRACRDAGLASVAVYAEVDRDAPFVALADEAFALGGS
                     TPADSYLDQAKLLDAAARAGADAVHPGYGFLAENADFAKAVIDTGLTWIGPSPQAIRD
                     LGDKVTARQLAAKAGAPLVPGTKDPVSGPDEVLAFACEHGLPVAIKAAFGGGGRGLKV
                     ARTTEEIPELFDSAVREAVSAFGRGECFVERYLDKPRHVEAQVLADQHGTVVVVGTRD
                     CTLQRRHQKLVEEAPAPFLSDEQRCTIHEAARLICAEVGYTGAGTVEFLVGTDGTVSF
                     LEVNTRLQVEHPVSEETTGLDLVREQFRIAAGERLSITSDPAPRGHAIEFRINAEDPA
                     RGFLPVPGVVTVFDPPSGPGVRLDAGVRAGSVIGGQFDSMLAKLIVVGSDREQALARS
                     RRALAEFTVEGLPTVIPFHRAVLDDPAFTAADGQPFTVHTRWIETEFSSQLQPYGATE
                     EALPPAPRQIVVVEVGGRRLEVSLPGELALRGGGAGRTKPRRRSGGRAAAASSNTVVA
                     PMQGTVIKVAVSDGDRVALGDLIVVLEAMKMENPVTAHQTGTISGLIAQPGTPITQGT
                     VLCMITP"
BASE COUNT         1014 a         1847 c         1935 g         1142 t
ORIGIN      
        1 ctcacccggg ccggagcgct gcggctggcg ccggcgctca aacgcaacac cctcgtaggg
       61 ggggtgcatt actacgacgc gatcaccgac gacgcccggc acaccatgac ggtggctcgt
      121 acagccgccc agtacggcgc cgcggtacgt agttccaccc aggtcgtcgg cttcctgcgg
      181 gaggcggacc ggatctgcgg agtccgggtg cgggactgtg agaccggcga cgaagccgac
      241 gtcgaggtgc acgtggtgct caactgcacc ggcgtctgga ccgatgagat tcagcgtctc
      301 tccggtgggc gaggtcggtt ccggatccgc ccctccaagg gagtccacat cgtggtctcc
      361 agggaccgca tcgtctcgga gagcgggctg atcttgcgca ccgcgacgtc ggtgctgttc
      421 gtcatcccgt ggcgcaacca ctggatcatc ggcaccaccg acaccggttg gaacctcgac
      481 ctcgcccacc ccgcggccac tcgggcagac atcgactacc tgctggacac ggtcaactcg
      541 gtgctggcca cgccgctgaa cgatgccgac atcgaaggcg tctacgctgg gttgcggccc
      601 ctgctggtcg gggagagcga ggagacctcg cggctgtccc gggagcacgc ggtcgcccgg
      661 gtggcacccg gtttggtcgc tatcgcgggt ggcaaataca cgacctatcg ggtgatggcc
      721 gccgatgcgg tggacgcggc ggtgccggat ctgcccggcc gggtcgcgcc ctcgatcacc
      781 gacaaagtgc cgctgctcgg cgcggacggc taccatgcac tggtcaacca ggccgagaca
      841 ctggccacgc ggtacgggct gcacccctac cggctacggc acctgctgga ccgctacggc
      901 tcgtcggtgc accagctgct ggccttggcc gcggatcgtc ccgatttgct ggcaccggtg
      961 cgcgaggcac ccgactacct gcgtgtcgag gtcgtgcacg ccgctactca cgagggcgcc
     1021 ctgcatctgg aggacgtgtt gacccggcgt acccggatct cgatcgaata cccgcaccgg
     1081 ggcgaggcct gcgccgttga cgtcgccgac ctcatgggcg aggtgctgaa ctggactgtt
     1141 gccgcgcgcg accgggaggt gcagctctac ctcgcccggg tggccgctga gcgagaatcg
     1201 caacgcgaac ccgacgactc caccgctgac gcccgccgcg ctgccgcgcc cgacccccgg
     1261 ctcctcgtcc ccgtcagctg acccaccccg atatggagac atatcggggt tactcggcgg
     1321 tcgattaccc cgatatgtct ccatatcggg agaggggacg gtcgatgaca tggtgctggg
     1381 tacgaagttc caggcctaca gcatggggga atagcccgca gtctcgagtt cccaggcgat
     1441 ccaggtagcc caccgctcgt cggccgggga gtaactgatg aagaagtcgg cggggcgttt
     1501 cgtcggttgg ttaatgctat cggtacgcca gcgagtcgtc atgtttccta aggttcccct
     1561 gaggggagtc tagttgatct gcaccgcggt gtggcactat ttatttggtg ctgtgattgg
     1621 cagggcgacg ctcgtaggca tcgatcgcag accggaactg atttgctgcg gtcgggcgct
     1681 cccgctgcgc gacccaaggt tgatccgaga tcatgtagcg cataggttat gatacgggcg
     1741 tgttcaccag gactcgaacg ctgccaaagg agcccttgga gcggcgtggc tcgatcgtgc
     1801 agtttgtgcc tgttcaatta acttggatgg tcttgggttt agcaattctc gtcattgtgg
     1861 cgatcattgc atcacccaac cttctggaga tttataattc ccaaaaagac tttgtcgtgg
     1921 gctcattgtt cgcgctagtc ggcttcctct ttggcaaagc attcagtcga acccacgagc
     1981 aaaaagcatt ggagctcatt cgcgatcgaa ctaccccgca ggtcgccgct gcgttgtctc
     2041 gtgaaataaa gagcatgttg catgatcggg gcgctttcga ggagctgtcg gtgctcgaaa
     2101 gaaacgtcaa tgccgcggct ggtcggctgt tggagtactt cgattcacaa gcagcgaagc
     2161 tcgatttcta tcgcgattct ccgcccctca cggtcgccct tgacgatctc gatcacgccg
     2221 cagccaacgt ggctcgcttg cgaagtagaa tggagggaat gcgaagtact tcggactctg
     2281 ctacgaatga aatcggaccc gcctttgctt caatccatcg agatctgcac gaatcgaatc
     2341 gtcgcagaat agaactgtac gaacatctca aatcgcgacc agggaggaac attgacggtg
     2401 actcatgggc catactcggc gttatgactt ccgacatcct caaggcagag cgaacgttgg
     2461 cgttgcttcg cactggttgc ttcgccggtt cagcggggga gcacgtgagt caaataatag
     2521 gatatctcac ggcggcgctg gcccgagcgg aagagttcag ggaatcgatg gagaccgagg
     2581 gtgtcgccat gcccgagcta ttcgatgtaa tgacgagcga tgtacacaag gcgttggaac
     2641 ggatcagcac gctcacttcg caggtgccgg gaactcggcc agaacctgcc aacgttgttc
     2701 gtgatgatcc tggtctgctg tgatcatcct gtcgaagccg cgtggcgcgc tcagatgcct
     2761 ggtgtgtcgt gcgttgatgc acagaactgc gctaccagcc cagcagttgt tgcggccctg
     2821 cggacaggca gacgtccaac ttgcccggcg tgaatcggcg cgaccgactg tgtgccagac
     2881 ctcgccgact gtaagcggcg gcaaacaacg atagcgtccg gtgttgcatg gtgggaatcc
     2941 gagaagaggt caggtgaagc cgaccagtcg aggcctcgat tggtcggctg ctgctgttct
     3001 cgtcgccgga gtgagcgccg ttctgtgcgg attgttgccg agcgctgctg cggacgcagt
     3061 ggttatccga atccttccgc tgctgggttt tctcacctcc gtgatcgtgc ttgccgagct
     3121 cactggcaaa gctgaagtgt tcgacgtggt cgcctcccag ctcgccagat gggcagcagg
     3181 aaattacctc gcattgttcg gattgtgcgt cgtattcgct tcggctacga caatttttct
     3241 gaatctggac acgactgccg tgctgttgac tccggtcatg ctcgctactg cggccaaggc
     3301 cgacatccct ggtatgccgt tggcaatgct gacggtgtgg ttggctaacg ccgcgagcct
     3361 gctgctgccc gtatcgaacc tcactaacct tctcgcttcc gatcgagtaa atctgagtcc
     3421 gaccgacttc gcgatccgca tggctgcacc ccaggccgca gcaatcatcg cgacaggggc
     3481 ctgtctttgg ttgttctact ggcgacgggg ccgacgcggt aacaagcggt acaccgtgcc
     3541 tacactgcat gtggcgcggg atcgcccact cttcggtatc gccgcggtgg tctgcccgac
     3601 atttgccttg ctggtgctgg tcggtgtacc gctggtgatc tcgtcgctaa tttgcgcggg
     3661 agtgcttgtc gtagcgttcc tggtccggga tcgaagtgtc ttcgcgtggc gaatgattcc
     3721 attccggcta ctggcattcg ttactggact gttcttggtc gtccagacga tagaccgata
     3781 tgggctgggc cgcttgtttg gtggcgtggt cggcgttgat gccggggtgg agggtgtcac
     3841 gaaggtggcc gcgctgggcg tcggcctctc caacgcgatc aacaatctac cggcttatgt
     3901 tgtcggcgaa ctagtcgtgg ctaacactga tcagctgctc gccttgttgg tcgctaccaa
     3961 tgtgagcccg ctgatcaccc cgtgggcatc gttggcgatt atcatctggt acgagcgctg
     4021 ccagtcagct ggtgtccgga tcggctgggg ccggtttgct atgaccggcg cagtcaccgt
     4081 ggtcgtcacc gtgattgccg ctgaaggagc actgctggtc agcggcatgt agaggtgtac
     4141 acctggacgc gacacgtgat gtacaaggac gcgacacacg gagcaccgag cacgacacac
     4201 aggaggtctg gggactaggg ggtgatcatg cagaggacgg tgccctgggt gatcggggtg
     4261 ccgggttgtg cgatgaggcc ggaaatggtg ccagtttggt gggcggtgac cgggttctcc
     4321 atcttcatcg cctcgaggac cacgatgagg tcgccgagcg cgacccgatc tccatcggac
     4381 accgcgacct tgatcacagt gccctgcatg ggcgccacga ccgtgttgct ggatgccgcg
     4441 gccgcccggc caccgctgcg ccttcggggc ttggtccggc cggcaccgcc acctcgcagg
     4501 gccagctctc ccggtagcga gacctccagc cgccggccac cgacttctac gaccacgatt
     4561 tggcggggcg ccggcggtag cgcttcttcg gtggctccgt agggctggag ttgcgaggag
     4621 aactcggtct cgatccaccg ggtgtgcacc gtgaagggct ggccgtcggc ggcggtgaaa
     4681 gccgggtcgt ccaggactgc gcgatggaag gggatgacgg tgggcaagcc ctcgacggtg
     4741 aactcggcca gcgcccgccg ggaccgcgcc agcgcctgct cgcgatcgga gccgacgacg
     4801 atgagtttgg cgagcatcga gtcgaactga ccaccgatca cgctgccggc gcgtactccg
     4861 gcgtcaagcc gcaccccagg tccggacggc ggatcgaaca ccgtgacgac tccgggcacc
     4921 ggcaggaatc cccgggcggg gtcctcggca ttgatccgga actcgatggc atggccgcgc
     4981 ggcgccggat cggaggtgat ggacagccgc tcgccggctg cgatccggaa ctgctcgcgc
     5041 acgaggtcca gaccggtggt ctcctccgac accggatgct cgacctgcag ccgcgtgttc
     5101 acctccagga acgaaaccgt gccgtcggtg cctaccagaa actcgacggt gcccgcgccg
     5161 gtatagccca cttcggcgca gatcaaccgg gcggcttcgt ggatcgtgca ccgttgctca
     5221 tcagacagga acggggccgg agcttcctcc acaagctttt gatgcctgcg ttggagcgtg
     5281 cagtcccggg taccgacgac tacgacggtg ccgtgctggt cagccagcac ctgagcctcg
     5341 acgtgtcgtg gcttgtccag gtagcgctcc acgaagcact cgccacgccc gaaggccgag
     5401 acggcctcgc ggaccgccga gtcgaacagc tcagggatct cctcggtggt gcgcgccacc
     5461 ttcaggccgc gcccaccgcc gccaaaggca gccttgatgg ccaccggcag accgtgttcg
     5521 caggcgaagg ccaacacctc atcgggcccc gacacgggat ccttggtgcc gggcaccaat
     5581 ggtgcccccg ccttggcggc gagctgccgg gcggtgacct tgtcacccag atcccggata
     5641 gcctgcggtg acggtccgat ccaggtcaac ccggtgtcga tcaccgcctt ggcgaagtct
     5701 gcgttctcgg cgaggaaccc gtagccgggg tgcaccgcat ccgcgccggc ccgggctgcg
     5761 gcatcgagca gcttggcctg gtcgaggtaa ctgtccgcgg gtgtgctgcc gcccaacgcg
     5821 aatgcctcgt cggccagcgc gacgaacgga gcgtcgcggt cgacctcggc gtacacggcg
     5881 acgctggcca gtccggcatc ccggcaggcc cgaatcaccc gcactgcgat ctctccac
//
LOCUS       DASVXZ010000205         1506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_22236, whole genome shotgun sequence.
ACCESSION   DASVXZ010000205 DASVXZ010000000
VERSION     DASVXZ010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22236"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VF788_04045"
     CDS             <1..474
                     /locus_tag="VF788_04045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933361.1"
                     /translation="LSTIDLGVHADEMARLDATLAARGDGELILTEWTDRVVAFATVR
                     SRTFVRNGHKMRFQAWKKTGLYWSMGAEIETWGRDFDTAQIQSRYLDTVIGQTCAALK
                     VDSDSDTNDNYLDEYEWGVNAPQPLRVVSICTAHWEGEVFGPTQVEAGEPCFEVG"
     gene            578..1287
                     /locus_tag="VF788_04050"
                     /pseudo
     CDS             578..1287
                     /locus_tag="VF788_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
BASE COUNT          285 a          473 c          482 g          266 t
ORIGIN      
        1 ctcagtacga tcgacctcgg cgtgcacgcg gacgagatgg cccgtctgga cgcgacgctg
       61 gccgctcggg gcgacgggga acttattctt accgaatgga cggaccgggt cgtcgccttc
      121 gctaccgtac ggtcacgcac gttcgttcgc aatggtcaca aaatgcggtt ccaggcgtgg
      181 aaaaagactg ggttgtactg gtcgatgggt gcggagatcg agacgtgggg gcgggacttc
      241 gacacggcgc agatccaaag ccgctacctc gacaccgtga tcgggcaaac ctgcgccgcg
      301 ctcaaagtgg acagcgacag cgacaccaac gacaactacc tggacgagta cgagtggggt
      361 gtgaatgcac ctcagccgtt gcgtgttgtc tcgatctgca cggcccactg ggagggcgag
      421 gtcttcgggc ctacccaggt ggaggccggt gagccctgct ttgaagtcgg ctaggcgctt
      481 gcgggaccaa agatccaccg ccgcgctcga ccgggatcca accatgccca tggggtctgt
      541 tgcatctgtg gagggcgagg tcgagcagac tgtgccgatg cgacgccacc ctcgtcgagg
      601 cccgtcaccg cagtccggct tcacggggtt ccggtttcct ccggacgtga tcatggttgc
      661 ggttcggtgg tatctgcggt acgggctgtc ctatcgcgac atcgaggagc tgctggccga
      721 acgtggtatc accgttgatc acgtcacgat ttatcgatgg gtgcagcggt tcaccctgct
      781 gctggtcgac gcggcacgac cctgccgaca cgctcccggg gatcgatggt tcgcggatga
      841 gacgtatgtc aagatcgctg gacgatgggt ctacctgtac cggcgatcga ccagtacggc
      901 caggtcatcg atgtcctggt gtcgacgaag cgggacctgg cggccactcg ccggttcttc
      961 acccgagccc tcgaacctgg cccaccaccg agcgaggtga ccacggatcg ggcatcggcc
     1021 tacccgcgcg tgctcgatga actggtgccc gccgcgcgcc acataaccga gcaatacgcc
     1081 aataactccg tcgaagctga ccacagccga ctcaaggccc ggttgtggcc aatgcgtggc
     1141 ctgaaacgac tccgttcagc gcgcgtgatc agtacgggac acgcattcat ccaaaatctg
     1201 cgccgtggcc actacgaact cggtgtggat gccgacccga ggcatcaact gtcggcagcc
     1261 ttcgctgcgc tcgcgctcgc ggtctgatgc aagacactga gcggtcgagt ctgcccacca
     1321 tcagataacg caacagcccc cggctcggca ctagctacgt tccggcaggc agctgagctg
     1381 agccaggccc aggttggaac ggaaaccaac tacgaccgca cctcgatcaa caagatcgag
     1441 cgcggccacc agttaccgga tcggccgttc tggcaggccg tggaccggtt gcttcaggcc
     1501 gagggc
//
LOCUS       DASVXZ010000206         3326 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_202048, whole genome shotgun sequence.
ACCESSION   DASVXZ010000206 DASVXZ010000000
VERSION     DASVXZ010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202048"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..736
                     /locus_tag="VF788_04055"
     CDS             <1..736
                     /locus_tag="VF788_04055"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX8933362.1"
                     /translation="VDHNLVGIPGTEQALVAEAPPYQRSNFAYIDIPGPYDKGMPSVY
                     YIAPPDPTWSKADQDAYVPGQSILLFTSAHEVWPGHFVQFLHANRSPSEFGQLFVGYA
                     YAEGWAHYSEEMMWEAGLGNGAPETHIGQLSEALLRDVRFLCSIGLHTQGMSMASCET
                     MFREQAYQDPGGARQQAARGTYDPGYLNYTMGKLMIRKLRADWTATHGGRTGWRAFHD
                     QFLSYGGPPIPLVREQMLGTARGDLF"
     gene            complement(781..1653)
                     /locus_tag="VF788_04060"
     CDS             complement(781..1653)
                     /locus_tag="VF788_04060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933363.1"
                     /translation="MWIGVVGGAGSSRGVPLDEALRRLGKELDRRCWGMVLGTPVPVP
                     ANALEPGADVVEVFPRGTEPVGCAADRRAVDGPAERLELVRLLSDAVVVLPGGVDVLA
                     DLLALLTEQALGLGDTPCGVLDLTGLLYPLTEQLDALDRAALLSVPLLRADDPAELLD
                     QLAAWRPNGGGDLREEVAWLRTSDSTLALVPTSAGLGLPGGLRGSGERGPLALCRLMD
                     QGWSVRLHPERLRPVAALMVPDTGGWRRVNCYRADGLQPVVPGAISYPLGETADCEPA
                     AAALQDLLRRGRVR"
     gene            1799..3220
                     /locus_tag="VF788_04065"
     CDS             1799..3220
                     /locus_tag="VF788_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEX8933364.1"
                     /translation="MAGPLARPPLLTAFVDDVMDLLRSIWDLWSATFWGPFWSLFGLA
                     ALTAGTFVFVAGEFALTTLERSTVDAHVQRVGDRRARQVQHAHSTLSFQLSGAQVGIT
                     ITTLLTGYIAQPAIADLIRPGIAAIGLPLSAASAVSVGIGLALATALSMVFGELVPQN
                     LAISRPLQTARQVAGVLNAFSVAFRWLISALNGSANWIVRRLGIEPAEDLRSARSPQE
                     LGSLVRSSAQHGTLDEGTATLLDRSLRFGERTAEELMTPRMQMEALRADEPVLALVDA
                     ARRSGFSRFPIYGSDLDDVRGVVHLKQAFAVQAANRADIRVSTLASQVPIVPSSLDGD
                     ALLDALRGQGLQVAIVVDEYGGTAGMVTLEDLVEEIVGDVRDEHDRLEVSQVQPLDEQ
                     SWMISGLLRADEVADAVGFVMPEGGYETVAGLVLERLGRIPDVGDEVDLDGWRLTVTR
                     MDRRRIADLRLTRTTTLTPQVTP"
BASE COUNT          570 a         1137 c         1054 g          565 t
ORIGIN      
        1 cgtcgaccac aacctcgtcg gcattcccgg taccgagcaa gcgttggtcg cggaagcgcc
       61 accctaccag cgctcaaact tcgcttacat cgacattcct ggcccgtacg acaagggtat
      121 gccttcggtt tactacatcg caccgccgga tccaacgtgg tccaaggccg atcaggacgc
      181 ttacgttcca ggccagtcga ttctgctctt cacctccgcg cacgaggtgt ggccggggca
      241 tttcgtgcag ttcttgcacg cgaaccgctc tccgtccgag ttcggccagc tgtttgtcgg
      301 ctacgcatac gcagaagggt gggcgcatta cagcgaggag atgatgtggg aagcgggact
      361 cggtaacgga gcgccggaga cgcacatcgg ccaactcagt gaggcgctgc tgcgtgacgt
      421 gcgcttcctg tgttcaatag gtctgcacac gcagggcatg agcatggcca gctgcgagac
      481 gatgttccgc gaacaggcct atcaagatcc gggtggggcc cgccagcagg cggcccgcgg
      541 tacctacgac ccgggttatc tgaactatac gatgggcaag ctcatgatcc gcaagctgcg
      601 tgcggactgg accgcgaccc acggagggcg caccggttgg cgcgcgttcc acgatcaatt
      661 cctgtcctac ggcggaccac cgattccctt ggtacgcgag caaatgctcg gaacagcgcg
      721 aggggacttg ttctagctcg cgacaacccg tccgtttggc tcccccatcg tccagaaccg
      781 tcagcggacg cgtccacggc gaagtaaatc ctggagtgcc gcggcggcgg gttcgcaatc
      841 tgctgtctcg ccgagcgggt acgaaatggc ccccggtacc accggctgga ggccgtcggc
      901 tcggtagcag ttcacccgcc gccagccacc ggtgtccggc accatcagcg cggccaccgg
      961 gcgcagccgc tccgggtgca gccgcaccga ccagccctgg tccatcagcc ggcacagcgc
     1021 aagggggcca cgctcccccg atccgcgcag acccccaggc aagccaagcc ccgccgaggt
     1081 cggaaccagc gcgagcgtgg aatcgctcgt ccgcagccag gcgacctcct cgcggaggtc
     1141 accgcctccg tttggccgcc aagcagcgag ttggtccagc aactcggccg gatcgtcggc
     1201 ccgcaataac ggcacgctca atagagctgc ccgatccagc gcatcgagct gttcggtcag
     1261 cggatagagc aagcccgtta ggtcgagaac gccgcacgga gtgtcgccca gtcccaacgc
     1321 ctgctcagtg agcagcgcaa gaaggtcggc cagtacgtcg accccaccgg gcagcaccac
     1381 gacagcgtcg gagagcagcc gcaccagctc caaccgctca gccggtccgt cgactgctcg
     1441 ccggtcggcg gcgcagccca ccggctcagt gccccgcggg aacacctcca cgacgtcggc
     1501 tccgggctcg agagcgttgg cagggaccgg caccggcgtc ccgagcacca tgccccagca
     1561 tcgccggtcc agctccttcc ccaaccgccg gagggcctca tcgagtggca ccccccggct
     1621 cgacccggcc cctcccacta caccgatcca cacgaacaga cacgttagcc cgaatggccg
     1681 tgctatggcg cgactgaagt tcgacaaccc atcgttcgac cgtagaatcg gctgcaccct
     1741 ggcccgcgag gagggtgacg aacccggtgc ctgcagcagc aacgcctggc tgtagtaggt
     1801 ggccgggcca ctggcccggc cacctctact caccgcgttc gtggacgatg tgatggattt
     1861 actgcgcagc atctgggatc tgtggtcggc cacattttgg ggcccttttt ggagcctatt
     1921 cgggttggcc gcgctgaccg caggcacctt cgtcttcgtc gccggtgaat tcgccctgac
     1981 cacgctggaa cgcagcactg tcgatgcgca tgtccagcgg gtcggtgacc gccgggcacg
     2041 gcaggtgcag catgctcaca gcacattgtc attccagctt tccggagctc aggtcggcat
     2101 cacgattacc accctgctca ccggatacat cgcccagccc gccatcgccg acttgatccg
     2161 gcccggtata gcggccatcg gactcccgct cagcgccgcg agtgcggtgt ccgtggggat
     2221 cgggttagca ctggccacag cgttgtcgat ggtattcggc gagctggtcc cgcagaatct
     2281 ggccatttcc cgaccactac agaccgcccg gcaggtcgct ggagtactca atgccttctc
     2341 cgtcgcgttc cgatggctga tctccgctct gaacggttca gcgaactgga tcgtccgccg
     2401 actgggtatc gaaccggccg aggacctgcg ctcggcacgc tctccgcagg agctcggttc
     2461 gctggttcgc agcagcgcgc aacacggcac ccttgacgag ggcacagcga ccctgctgga
     2521 tcgctcgctg cgcttcggtg aacgcaccgc tgaggagctg atgacgcccc ggatgcagat
     2581 ggaggctctc cgtgcggacg agccggtact cgccttggtc gacgccgccc ggcgatccgg
     2641 attctcccgc ttcccgatct atggcagcga cctcgacgat gtgcgtggcg tggtgcacct
     2701 caagcaggca ttcgcggtgc aagccgccaa ccgtgccgac atccgggtca gcacactcgc
     2761 cagccaggtc cccatcgtgc cgagctcact ggacggagat gcgctgctcg acgcgctgcg
     2821 cggccaggga ctccaggtgg cgatcgtggt cgacgagtac ggcggtaccg cgggcatggt
     2881 caccctcgaa gatctggtag aggagatcgt cggtgacgtc cgcgacgagc atgatcggtt
     2941 ggaggtctcc caggttcagc cgctcgacga gcagagctgg atgatctccg gtctgttgcg
     3001 ggcagatgag gtcgccgacg ctgtcggatt cgtgatgcct gagggcggct atgagacggt
     3061 ggccggattg gtactggaac ggctgggtcg cattccggac gtcggtgacg aggtcgacct
     3121 cgacgggtgg cggctgaccg tgacgcggat ggaccgccgc cgcatcgccg atctccggct
     3181 cacccgaact actacgctca ccccgcaggt gaccccgtga gtggtgccgc gttgctcgtc
     3241 tcgctgctcc tgctggccag taacgcattc tttgtcggcg ccgagttcgc cctgatcagt
     3301 gcccggcgag accggttgga ggcgat
//
LOCUS       DASVXZ010000207         1810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_381452, whole genome shotgun sequence.
ACCESSION   DASVXZ010000207 DASVXZ010000000
VERSION     DASVXZ010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381452"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VF788_04070"
     CDS             <1..448
                     /locus_tag="VF788_04070"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8933365.1"
                     /translation="STPEGATDYVHADIREPDIILAEAARTLDFAQPVGLMLLGILNF
                     IPDTDQAHAIVDQLLDALCPGSYLVISHPTAEIDGAAMREAMRFWNESGAAPIVARSR
                     QQLIHFFDGLELLAPGVVSCSRWRPDPSKIGVPAEVFHFSGVGRKP"
     gene            502..939
                     /locus_tag="VF788_04075"
     CDS             502..939
                     /locus_tag="VF788_04075"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Scr1 family TA system antitoxin-like
                     transcriptional regulator"
                     /protein_id="HEX8933366.1"
                     /translation="MRPSRSSPSDHVPSRSHGPTALRIALGTQLRRLREANGISAEAA
                     GYAIRASHAKISRMELGRVGFKERDVADLLTLYGITDEREQNAFLSLARRANVPGWWH
                     QYSNILPGWFEMYLGLEQASSVIRSYQPQFVPDLLQTRGWPIR"
     gene            924..1391
                     /locus_tag="VF788_04080"
     CDS             924..1391
                     /locus_tag="VF788_04080"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5753 domain-containing protein"
                     /protein_id="HEX8933367.1"
                     /translation="MAHTVIRLGNPDASPDDIERLLALRMTRQQILIQPGAPILWAVI
                     DEAALRRLQASSAMRAQVKHLVKMAELPNVRIQVMPIYFGAHVAVGGPFAILRFSEPD
                     LPDIVYLEQLTCALYLDKGPDVEHYLMVMDRLCVQAKSPAETARFLNDTLKSL"
     gene            1478..>1810
                     /locus_tag="VF788_04085"
     CDS             1478..>1810
                     /locus_tag="VF788_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005438718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEX8933368.1"
                     /translation="MTATKAELPGPVAPMLASAGAPPSGPGWAFEFKWDGVRAIAAVA
                     GDQLRLYSRNGNDITGGYPELGTLSGLIEARRVLLDGEIVTLGAAGRPDFGLLQQRMH
                     VRAPSPELV"
BASE COUNT          321 a          581 c          581 g          327 t
ORIGIN      
        1 cagcactccg gaaggcgcca ccgactacgt gcatgcagac attcgcgaac cggacataat
       61 tctggccgaa gccgcccgga ccctggactt cgcccagccg gtggggctca tgctgttggg
      121 aatcttgaac ttcataccgg acaccgacca ggctcacgcg attgtggacc agctgctcga
      181 cgccctatgt ccgggtagct acctggtgat atcgcacccc accgcggaga tcgacggtgc
      241 cgcgatgaga gaggccatgc ggttctggaa cgaaagtggc gcagctccta tagtggcccg
      301 gagccggcaa cagctgatcc atttcttcga cggcttggag ctgctggcgc ctggcgtggt
      361 ctcatgctcg cggtggcgcc ccgacccgtc caaaatcggt gtgcctgcgg aggtgtttca
      421 tttcagtggc gtcggacgaa agccgtgacg cgccgataat cggcggcgtg ctgcatcggg
      481 aggaggtatg gcgtgggcgc tatgcggccc agtcggagtt cgccgagcga tcacgtaccg
      541 tcacgatcgc acggccccac cgcgcttcgt atcgcgttgg gcactcagct gcgccgactc
      601 cgtgaggcca acggaatcag tgccgaggcg gccggctatg cgatccgcgc ctcccacgcc
      661 aagatcagtc gcatggagct cgggcgggtc ggtttcaagg agcgcgacgt ggcagatctg
      721 ctcacgctct acggcattac cgacgagcgc gagcagaacg cgtttctgtc attggcgcgg
      781 cgggccaacg tgccgggctg gtggcaccag tacagcaata tcctgccggg ctggttcgag
      841 atgtatctcg gcttggagca ggccagttca gtcatccgta gctaccaacc tcaatttgtc
      901 cccgacctac tacagacccg tgggtggccc atacggtgat ccggctcggc aacccggacg
      961 catccccgga cgatatcgag cgcctgctcg cactgcgcat gacacgtcag caaatcctca
     1021 ttcaacccgg agctcccatt ctgtgggccg tgatcgacga ggcagcgcta cggcggcttc
     1081 aggcaagttc ggcgatgcga gcacaggtca agcacctcgt caagatggcc gagctgccca
     1141 atgtcaggat tcaggtgatg ccgatctatt tcggtgcgca cgtggcagta ggtggcccct
     1201 tcgcgatcct gcggttctcg gaacccgacc tgccagatat cgtctacctc gagcagctca
     1261 cctgcgcgct ctatctggac aagggcccgg acgtcgagca ctaccttatg gtcatggacc
     1321 gcttgtgcgt ccaagccaaa tctcccgctg agacagccag gttcctcaac gatacgctca
     1381 aaagccttta acacccaccc ctctcgaacc ccgacatgcc tccatgtcgg cgacggtgtg
     1441 ggggctttgg gctcggttga gggcaagctg tgaggtgatg acggcaacga aagctgagct
     1501 gcccggtccg gtggcgccga tgttggcctc ggccggtgct cccccgtcgg gcccaggatg
     1561 ggcgttcgag ttcaaatggg acggggtacg ggccatcgct gcggtcgccg gcgaccagct
     1621 gcggctgtac agccgcaacg gcaacgacat caccggcggg tatcccgagc tgggcacgct
     1681 cagcgggctc atcgaggccc gccgggtgct actcgacggg gagatcgtca cgctgggcgc
     1741 cgccggacgg ccggatttcg ggttgctcca gcagcgcatg cacgtccgcg cgccgagccc
     1801 ggagctggtg
//
LOCUS       DASVXZ010000208         2879 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1725648, whole genome shotgun sequence.
ACCESSION   DASVXZ010000208 DASVXZ010000000
VERSION     DASVXZ010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1725648"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VF788_04090"
     CDS             <1..345
                     /locus_tag="VF788_04090"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804827.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The beta chain is a
                     regulatory subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEX8933369.1"
                     /translation="VGEEHYRVAQEVKRILQKYNDLQEIIAILGIDELSEEDKVTVNR
                     ARRIERFLSQNMYSAEQFTGQEGSTVPLKETIEAFDKLSKGEFDHMPEQAFYLCGGLE
                     DLERKYKQISES"
     gene            411..791
                     /locus_tag="VF788_04095"
     CDS             411..791
                     /locus_tag="VF788_04095"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEX8933370.1"
                     /translation="MAEMSVELVAVERPVWSGGASSVFAETTVGELGILPGHTPLLGE
                     LVEGGIVRITTTDGEVVTAAVFGGFLSVTGDKVSVLAEAAELADEIDAQAARDELARA
                     GSDADDESMRARATARLKAVGEAV"
     gene            820..1245
                     /locus_tag="VF788_04100"
     CDS             820..1245
                     /locus_tag="VF788_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2550 domain-containing protein"
                     /protein_id="HEX8933371.1"
                     /translation="MGIGQTVGLALLGGLFIIAALAVRRFRIVRQGGIEVALRSRFNA
                     AGRGWHQGVGRYRGDDFAWFRVTSLRSGPDHVLGRDELVIVERRGLTAPESYAMPGGS
                     VVVRCRTGVDELELAMRQDTLTGFLSWLESAPPRSRRGS"
     gene            complement(1252..1833)
                     /locus_tag="VF788_04105"
     CDS             complement(1252..1833)
                     /locus_tag="VF788_04105"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEX8933372.1"
                     /translation="MAVHLTKIYTRTGDDGTTSLGDFARVSKTDPRLIAYADVDEANC
                     ALGVALALGALPPGVVKVLKQVQNDLFDVGADLCTPIVEKSKYPALRIDESYVTRLES
                     WCDEFNAPLPKLDSFILPGGTPGAALLHTARAISRRAERSIWALLAVDSPRTNPLTAR
                     YLNRLSDLLFILSRVANPGGDVLWAPGGGPQDS"
     gene            1891..>2879
                     /gene="murA"
                     /locus_tag="VF788_04110"
     CDS             1891..>2879
                     /gene="murA"
                     /locus_tag="VF788_04110"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEX8933373.1"
                     /translation="MSEHFRVSGGARLSGEVQVVGAKNSVLKLMAAALLAEGTTTLSN
                     CPEILDVPLMADVLRGLGCEVEVTGSTVRISTPAEPKHEADYGSVSKLRASVCVLGPL
                     VGRCRRAKVALPGGDAIGSRPLDMHQNGLRKLGARSEIEHGCVVAEAEGLHGAQIWLD
                     FPSVGATENILMAAVLAEGTTVIDNAAREPEIVDLCLMLQQMGARISGAGSSTLTVEG
                     VDLLVPTEHRVIGDRIVGATWAFAATMTGGDVTVRGVDPHHLDLVLEKLRLAGAQVGY
                     PGGDSFRVTMPGRPTAVDFVTLPYPGFATDLQPMAIALSAISEGTSMITENVF"
BASE COUNT          470 a          875 c         1050 g          484 t
ORIGIN      
        1 gtgggcgagg agcactaccg ggtcgcgcaa gaggtgaagc ggatcctgca gaagtacaac
       61 gacctgcagg agatcatcgc cattctgggt atcgatgagc tgtccgaaga ggacaaggtt
      121 acggtcaaca gagcgcggcg aatcgagcgg ttcctgagcc agaacatgta ctccgccgag
      181 cagttcaccg gccaggaggg ctctaccgtg ccactcaagg agaccatcga ggccttcgac
      241 aagctttcca agggtgagtt tgaccacatg ccggaacagg ccttctacct ctgtggtggg
      301 ctcgaggatc tggaacggaa gtacaagcag atctccgaaa gctgacgttt gcgacaggtc
      361 agccggggac tgcatcagca gcggggcggc ggtaaagcaa ggagacgtgg gtggctgaga
      421 tgtccgtcga gctggtggcg gtggaacggc cggtgtggtc tggcggggcg agctcggtgt
      481 tcgccgaaac gacagtgggg gagcttggca tcctgcctgg gcacacgcca ctgctcggcg
      541 aactagtgga gggcggcatc gtccggatca ccaccactga cggcgaggtc gtgacggcgg
      601 ccgtattcgg tggtttccta tcagtcaccg gtgacaaggt cagcgtgctc gccgaggccg
      661 ccgagctcgc tgacgagatt gacgcccagg ccgccagaga cgagctagcg cgcgcgggca
      721 gcgacgccga cgacgagtcg atgcgagcca gggccactgc tcggctgaag gcggtcggcg
      781 aggccgtctg agatctctcc gcgcacggga gcggcgtcca tggggatcgg acagaccgtt
      841 ggtttggccc tgctgggagg gctgttcatc atcgccgcgt tggcggttcg gcgtttccga
      901 atcgtgcggc aaggcgggat cgaggtcgcg ttgcggtcgc ggtttaacgc cgcggggcgt
      961 ggctggcacc agggggtcgg gcgctaccgg ggcgacgact tcgcctggtt ccgcgtcacc
     1021 agcctgcggt ccggcccgga ccatgttctc ggccgggatg agctggtgat cgttgagcgc
     1081 cgcggtttga cggcgccgga gagctacgca atgcccggcg gatcggtcgt ggttcgttgt
     1141 cgcaccggcg ttgatgagct ggaactggcc atgcggcagg acaccctcac cgggttcctg
     1201 tcctggctgg aatcggcccc gccgcgatcg cgacggggct cgtgagtgca ctcacgagtc
     1261 ttgtggcccc ccgccggggg cccacaagac atccccccct gggttggcaa cccgggagag
     1321 gatgaacagc aggtcggaaa gccggttgag gtagcgcgcg gtcagcgggt tcgtgcgggg
     1381 cgaatccacc gccagcaggg cccagatgct gcgctcagcc cgccggctga tcgccctggc
     1441 agtgtgcagc agcgcggcgc cgggggtgcc gcccggcagg atgaacgagt ccagcttggg
     1501 caacggggcg ttgaactcgt cgcaccagct ctccaggcgg gtgacgtagc tctcatcgat
     1561 gcgtagcgca ggatacttcg acttctcgac gatcggagtg cacagatcag cgcccacgtc
     1621 gaacagatcg ttctgcacct gtttcagtac cttgaccacg cctggtggaa gtgctcccag
     1681 ggccagcgct acgccgagcg cgcagttggc ttcgtccacg tcggcgtagg cgatgagccg
     1741 cggatcggtc ttactgaccc gcgcgaaatc gccgaggctg gtggttccgt cgtcgccggt
     1801 gcgggtgtag atcttggtca ggtgcacggc catggacttg aggctacggg tgcacgctac
     1861 ccgtgcgggc acccgctagc gtgcaccccc gtgagcgagc acttcagggt cagtggcggt
     1921 gcgcggttga gcggcgaggt gcaggtcgta ggggcgaaga acagcgtgtt gaagctgatg
     1981 gcggcggcat tgctggcaga gggcaccacc acgctgtcca actgtcccga gatcctggac
     2041 gtcccgctga tggccgacgt gctgcgcggg ctcggctgtg aggtcgaagt caccgggtcg
     2101 accgtgcgta tcagcacgcc ggccgagccc aagcatgagg ccgactacgg ctcggtgagc
     2161 aagctgcggg cttcggtctg tgtgcttggc ccgctggtgg gccgctgccg gcgggccaaa
     2221 gtcgcgctgc ccggcgggga cgccatcggc tcacgccccc tggacatgca ccagaacggg
     2281 cttcgcaagc tgggcgcccg cagcgagatc gagcacggtt gtgtggtcgc cgaggctgag
     2341 gggttgcacg gggcgcagat ctggctggat ttcccgagcg tcggggccac cgagaacatc
     2401 ctgatggccg cggtgcttgc ggagggcacc acggtgatcg acaacgcagc gcgcgagccg
     2461 gagatcgtgg acctgtgcct gatgctccag cagatgggtg cgcggatttc cggcgcgggc
     2521 agctccacgc tcaccgtcga gggggtggac ctgctggtgc ccaccgaaca tcgggtgatc
     2581 ggggatcgca tcgtcggcgc cacctgggcc ttcgccgcca cgatgaccgg gggcgacgtc
     2641 actgtccgag gcgtcgatcc gcatcacctc gaccttgttc tggagaagct gcgcctggca
     2701 ggtgcccagg tcggctaccc ggggggcgac agcttccggg tgacgatgcc cggccggccc
     2761 accgcggtgg acttcgtgac gctgccctat ccgggtttcg ccaccgatct gcagccgatg
     2821 gcgatcgcgc tctcagcgat ctccgagggc acctcgatga tcaccgagaa cgtcttcga
//
LOCUS       DASVXZ010000209         2878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_113099, whole genome shotgun sequence.
ACCESSION   DASVXZ010000209 DASVXZ010000000
VERSION     DASVXZ010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113099"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VF788_04115"
     CDS             <1..201
                     /locus_tag="VF788_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933374.1"
                     /translation="TVITSGGNRKPVKLDLGAGGRERLRRINTACPSLPSMDATEPSD
                     LPTTVAARSPSAEMLSVVSPDF"
     gene            246..1637
                     /locus_tag="VF788_04120"
     CDS             246..1637
                     /locus_tag="VF788_04120"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8933375.1"
                     /translation="MKITDILRCDARPGHLIEWTLHAVTVASADDVAEDSRPPAYIQE
                     SHVRTVRTLRQRGRYIPTWVGTAFDILGHVDLDILESTLQLWTRSHETLRSGFRWVGE
                     DLQRFTLDVDTVSLQREMVGDFPWAEGLCQHLQDRFDAATDSMSWPNFIYAAVVRDDS
                     TSLYLAFDHINVDAYSLLLVPAEIHNLYAARAEGRAVEPPETGSYVDFSEIERAQADR
                     IDESDEIVARWREFIGSCDGMLPTFPLELGIVPGDLPKQNLLREMLVDDSDATAFDAY
                     CRRFGSRTLAGILAASSVVVLEVGGHSTYRTVVPFHTRATSQWSESVGWYVGVAPIEI
                     TTAQAQNFREILEMARDALHANRSLARMPIARVLHLLGSDFRPTSPDLFSLISYVDAR
                     VAPGADRWAEWNASTLIRVSQGDQVCVWITRVHEGLQVACRYPDTDIAHKNILRFVEG
                     LRKIIVSVPRISG"
     gene            1750..1917
                     /locus_tag="VF788_04125"
     CDS             1750..1917
                     /locus_tag="VF788_04125"
                     /inference="COORDINATES: protein motif:HMM:NF021525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2255 family protein"
                     /protein_id="HEX8933376.1"
                     /translation="MLRTESSRFKSEAAEELEIASLRSDGTLRNPRTIWIVRDGDDIY
                     VRSVNGVTSDW"
     gene            complement(2267..>2878)
                     /locus_tag="VF788_04130"
     CDS             complement(2267..>2878)
                     /locus_tag="VF788_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010316582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933377.1"
                     /translation="LGPAPRRADTRWRSFLRAQATGLLATDFFTLDTITLRRIYVLFI
                     MEIRTRTVHILGATAHPTAAWTTQVARNLLMDLGDQISTFRFLIRDRDSKFTASFDAV
                     FASEGINVVKIPPRTPRANCYAERFIGSVRAECTDRLLIYHERHARTVLNQYVRHVND
                     HRPHQSLGQHPPTHDPATMIPLGTPIRRHQVLGGVIDEYRRAA"
BASE COUNT          526 a          852 c          952 g          548 t
ORIGIN      
        1 accgtgatca cctccggcgg aaaccgaaaa ccagtaaagc ttgaccttgg cgctggcggc
       61 cgggagcggc tacgacgcat caacacagcc tgcccgagcc tcccatcgat ggacgcaaca
      121 gagccgtctg acctgcccac cacggtcgcg gcgcggtcac catcagcgga aatgctttca
      181 gtagtatcac ccgacttcta gccgccctgt cccatgcgct gaggggacaa atgaacggag
      241 acccggtgaa gatcaccgac attctgcgct gcgatgcccg ccccggtcac ctcatcgagt
      301 ggacgctgca cgcagttact gtcgcatcag cagacgacgt agctgaggac tcccgacctc
      361 cggcgtacat ccaggagtcg cacgtccgga ccgtgcgaac cttgcgccaa cgcggccgct
      421 acatcccaac ctgggtgggc actgcgttcg acattctggg tcacgtcgat ctcgacatcc
      481 tggaatccac gctgcagctg tggacccgaa gtcatgagac gctgcgcagt ggcttccgct
      541 gggtcggcga ggatctgcag cgattcaccc tggacgtcga cacggtgtca ctacagcgcg
      601 aaatggtggg cgacttccct tgggcggaag gcctgtgcca gcacctgcag gaccgcttcg
      661 atgcggccac ggactcgatg agctggccga acttcatcta tgccgctgtt gtccgggacg
      721 attccaccag cctctacctc gcctttgatc acatcaacgt ggacgcgtac tcgctcctgc
      781 tcgtacccgc ggagatccac aatctctatg cggcgagggc cgagggtcgg gcagtagagc
      841 cgccagagac agggagttat gtggacttct ctgagattga gcgggcacag gctgatcgga
      901 tcgacgagtc cgatgagatc gtcgcgcgct ggcgggaatt cattggctcc tgcgacggca
      961 tgctgcccac cttcccgctg gaactcggaa tcgtccccgg cgacctgccc aaacagaacc
     1021 ttctgcggga gatgctggtg gacgactcgg acgcgacggc atttgacgcg tactgccggc
     1081 ggttcgggag ccggaccctt gccggcatct tggccgcgtc gagtgttgtc gtcctcgagg
     1141 tcggaggcca ttcgacctac cgaaccgtcg tcccattcca cacccgagcg acgtcgcagt
     1201 ggtcggaatc ggtgggctgg tacgtcggcg tggcaccgat cgagatcacc acggcgcagg
     1261 cccagaactt ccgggaaata ctggagatgg cacgcgatgc cctgcacgcc aatagatctc
     1321 tggcccgaat gcccatcgcc cgggtcctcc acctactggg gtcggacttc cgccccacgt
     1381 cacccgacct gttctcgctg atctcctacg tcgacgcccg agtcgcgccc ggggctgatc
     1441 gttgggccga gtggaacgcg tctaccctca tcagggtatc gcagggcgat caggtgtgcg
     1501 tctggatcac tagagtccac gagggattgc aggtggcctg ccgctacccg gataccgaca
     1561 tcgcgcacaa gaacatcctg cgcttcgtcg aaggactgcg gaagatcatc gtttcggtcc
     1621 cccggatcag cgggtaagga acgactgacg aattcttggc acggtgatta tagaaaagat
     1681 caacggctgc ttggaaaacg cagagttact tcccagagag tcgccagccg cagcctggca
     1741 ggcgaagttg tgttgcgaac ggagagtagc cgattcaaga gcgaagcagc ggaagagttg
     1801 gagatcgcct cacttcgaag cgacggtacg ctgcgcaacc cgaggactat ctggattgtc
     1861 cgcgacggcg acgacatcta cgtccgttcc gtcaacggtg tcacctccga ctggtagggg
     1921 ccccgcgcgc gccactaagg ccacatccaa gcgcgctgtg ttggctagcg gtgagggctg
     1981 cgcttcggtt tgcgtgccgt caacgctgtt tgatcgatcg tcttcgttca ccaaggggcg
     2041 acgtgccggt atgcgtcgga cagtctgtgc tgtattgctt ccgctgacga cgggctgcga
     2101 tgatcatgct aagtgacggc gtgagagtag ctgacgatgc tggtggtgca ctggtcgctc
     2161 caacgctgca tagattggtc agacccaggg cgctgcggaa gtggcttggg catgtgacgt
     2221 gccaaaactc gatgcgcagc tgtttgaccc ggagtttctg gctgagctag gcggctcgtc
     2281 ggtattcgtc gatcacgccg ccgaggactt ggtggcgtcg gatcggggtg ccgagaggga
     2341 tcatggtggc ggggtcgtgg gttggtgggt gttggcccag gctctggtgc gggcggtggt
     2401 cattgacatg gcgtacgtac tggttgagca cggtgcgggc gtgtcgttcg tggtagatca
     2461 gcagcctgtc ggtgcactcg gcgcggacgc tgccgatgaa ccgttccgcg tagcagttcg
     2521 cccggggcgt ccggggaggg atcttgacca cgttgatgcc ttcggaggcg aagacggcgt
     2581 cgaaggaagc ggtgaacttg gaatcccgat cgcggatcag gaagcggaag gtgctgatct
     2641 gatcaccgag gtccatcagc agattgcggg cgacttgggt ggtccaggcc gcggtcgggt
     2701 gagccgtggc cccaaggatg tgcaccgtgc gggtgcggat ctccatgatg aacaggacgt
     2761 agattctgcg cagcgtgatg gtgtcgaggg tgaagaagtc ggtggccagc agtccggtgg
     2821 cctgagcgcg caggaagctc cgccacctgg tgtcggcccg gcgtggtgct gggccgag
//
LOCUS       DASVXZ010000210         3681 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1547302, whole genome shotgun sequence.
ACCESSION   DASVXZ010000210 DASVXZ010000000
VERSION     DASVXZ010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1547302"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..468)
                     /locus_tag="VF788_04135"
     CDS             complement(<1..468)
                     /locus_tag="VF788_04135"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEX8933378.1"
                     /translation="MNPSQHAEGAHVGGQQISEAPPGHRRRGLLTATAGVTLLLDVLS
                     KIIAVMALEGHPPVKLLGGGLYLVVYRNSGAAFSMATGLTWLLSLIAVGVVVVIIRLA
                     PRLRSAGWAFGLGLVLGGALGNLVDRLLRAPGPLRGHVVDFLSLFAPDGSVWPV"
     gene            complement(501..1979)
                     /locus_tag="VF788_04140"
     CDS             complement(501..1979)
                     /locus_tag="VF788_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HEX8933379.1"
                     /translation="MNGVEFVLGAGAAVLLLAVLAVRISTRVGLPSLLVYLAIGLLMG
                     ESGLGIQFSDASLTAALGIAGLVLILAEGGLTTRWSVIRPALASGIALAIGAVAVSIA
                     VTGWALHLLLDLDWRTALLWGAVLSSTDAAAVFSVLRALKVSPRLAGSLELESGINDA
                     PVYIAVVLLATGDPLRWWTPLLVGYELLVGAVVGAALGFAGAWTLRRAALPATGLYPL
                     ATIAVCVLAFAAGQGLHASGFLATYLAGLVLGNARLPHRGDTLSFAEGLGWLAQIALF
                     VLLGLYASPARLPGVLIPALVAGAVLVVLARPLSVMLALTPLRVSWREQAFLSWSGLR
                     GAVPIVLALIALTRGFPGAQQLVDVVFVLVVLLTVVQGVTLPVVVHWLGLSRPEQSQE
                     MQVDSAALDEMDAELLQIKVPRPSRLHGVYLWELRLPTGTVVSLVVRDGEGFTPQPTT
                     RLEQGDQLLVVTTAGQRDTAEQRIRAVHRAGRLARWRGETGV"
     gene            complement(2008..2805)
                     /locus_tag="VF788_04145"
     CDS             complement(2008..2805)
                     /locus_tag="VF788_04145"
                     /inference="COORDINATES: protein motif:HMM:NF025033.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8933380.1"
                     /translation="MFQHRKPLTGGPATLRWRELLEARAIPPEIRTAAPQDPNRHDPA
                     RFVPPAAPEDTPSRRAALELLGPDCGTVLDVGCGSGAAGLALVPKVSHLTGVDHAEDM
                     LRAFERSCAERGVAHRSVHGPWPDSAPEAGDADVVVSHHVGYNTVELGPFVVALGAAA
                     RRGVVVELHAVHPGAWLDPLWLQFHGLRRPSPATADDVLAVFAEVGIRPEVRRWSRPA
                     QPRSPGAELEFSLRRLCLPAQRRTEVAQAVAKLGPRHRDLVTISWST"
     gene            complement(2808..>3681)
                     /locus_tag="VF788_04150"
     CDS             complement(2808..>3681)
                     /locus_tag="VF788_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5915 domain-containing protein"
                     /protein_id="HEX8933381.1"
                     /translation="DTLHTVLELTCRLAAPLLPLSTEAIWRGLTGQRSVHLTDWPDPT
                     HLPQDRELVAGMDRVRQVVSTALSLRKARGLRVRQPLSALIVAAPDADTLAPFTDLIR
                     DEVNVRSVELTEDVSAYGRFELTVNARACGPRLGGDTQKVIRAVKEGDWERDPNGVLS
                     AAGIPLLDGEYSERLAAADPADTAALPAGSGLVVLQTEITPELAAEGLARDLVRVVQQ
                     ARRQAGLDVTDRIALTIDAPPMVLAAAREHEQFIAGEVLAREVHYAALPEGFAGIIGD
                     GVEVRVAATRLVSV"
BASE COUNT          669 a         1355 c         1198 g          459 t
ORIGIN      
        1 tacaggccac acgctgccgt ccggcgcgaa caacgacaaa aagtccacca cgtgcccgcg
       61 cagcggaccg ggagcgcgga gcagccgatc caccagattt cccagtgccc cgcccaacac
      121 caggccaagc ccgaaggccc aaccggcgct gcgcagccgg ggcgccagcc ggatgatcac
      181 gaccaccacg cccacggcga tcagcgacag cagccacgtc aacccggttg ccatcgagaa
      241 cgccgcaccc gagttgcggt agaccaccag atacagcccg ccacccagca atttcaccgg
      301 tgggtggccc tccaaggcca tcacggcgat aatcttgctc agcacgtcca gcaggagcgt
      361 gacaccggcg gtagcggtca gtaagcccct ccggcgatgt cccggcggcg cctcggagat
      421 ctgctggccg ccgacgtgcg ctccctcggc gtgctgcgat ggattcatct ccccattgtg
      481 accaatcatt ccgccggccc tcagacgccg gtctctccgc gccaccgggc caaccggccc
      541 gcccggtgaa ccgcccggat ccgctgctca gcggtgtctc gctgccccgc tgtggtgacg
      601 accaggagct gatcgccctg ctccagccgg gtggtcggct gcggggtgaa tccttccccg
      661 tcgcgcacta ccaggctgac caccgtaccg gtgggcagcc tcagttccca gagatacacg
      721 ccgtgcagcc gggaaggtcg gggcaccttg atctggagca gttcggcgtc catctcatcc
      781 agcgccgcgg aatcgacctg catctcctgg ctctgctcgg gccgagagag ccccagccaa
      841 tgcacgacca caggtagcgt gacgccctgc accaccgtaa gcagaacgac gagcacgaac
      901 accacgtcca ccagctgctg ggccccgggg aatcccctag tcagcgcgat cagcgcgagc
      961 acgatgggta ccgcgccacg cagtcccgac cacgacagga aggcctgttc gcgccaggac
     1021 acccgcaacg gggtcagcgc gagcatcacc gacaacgggc gcgcgagcac caccagcacc
     1081 gccccagcga ccagagcggg gatcaacaca ccgggcaatc gagccggcga ggcatacagg
     1141 cccagcagca cgaacagggc gatctgggcg agccagccca gaccctcggc gaaggacagg
     1201 gtgtcaccgc ggtgcggcag ccgcgcattg ccgagcacca gcccggcgag ataggtcgcc
     1261 aggaaacctg aggcatgcag gccttgcccg gcagcgaagg cgagcacgca taccgcgatg
     1321 gtcgccagcg ggtagagacc ggttgcgggc agggccgcgc gccgtagcgt ccacgctccc
     1381 gcgaaaccca gcgccgcgcc caccactgca ccgacgagca actcgtagcc gactagcagc
     1441 ggcgtccacc agcgcagcgg gtcaccggtc gcgagcaaca ccaccgcgat gtacaccggt
     1501 gcatcgttga tgcccgattc cagctcgagc gagcccgcca ggcggggaga caccttcaaa
     1561 gcgcgcagca cgctgaacac cgccgccgcg tccgtggagg acaacaccgc gccccagagc
     1621 agcgcagtgc gccagtccag atcgagcaac aggtgcagcg cccatccggt gaccgcgatg
     1681 ctcacggcga ccgccccgat ggccagcgcg atcccagaag ctagcgcggg gcggatgacc
     1741 gaccagcggg tggtcagacc cccttcggcc agaatcagta ccagcccggc aatgcccaga
     1801 gcggcggtca gcgacgcgtc ggagaactgg atacccaggc ccgactcacc catcagcagg
     1861 ccgatggcca ggtaaaccag cagcgacggc aacccgaccc gggtggagat ccgtaccgcg
     1921 aggacagcaa ggagcagcac cgcggccccc gcgccaagta cgaactccac cccgttcacg
     1981 cccggattgt gccgtggttg gccgggttca ggtggaccag gagatcgtga ccaggtcccg
     2041 gtggcgtgga cccagcttcg ctactgcctg ggcgacctcc gtccggcgct gcgccggtag
     2101 gcaaagccgg cggagagaga attcaagctc cgcgccggga ctgcggggct gggcgggccg
     2161 gctccagcgt cggacctcgg ggcgtatccc cacttcggcg aataccgcta acacatcgtc
     2221 cgcagtcgcc ggcgatggtc gacgcaaccc atgaaactgc aaccacaacg ggtccagcca
     2281 cgctcccggg tgcaccgcat gtagctcaac gacgactccg cggcgtgccg cggcacccag
     2341 cgccacgacg aaaggcccca gctcaactgt gttgtagccc acgtggtggc tgaccacgac
     2401 gtcggcgtcg ccggcctccg gcgcggagtc cggccaaggc ccatgcacgc tgcggtgcgc
     2461 cacaccccgc tcggcacagg accgctcaaa agcacgcagc atgtcctccg cgtgatccac
     2521 tccggtcagg tgggacacct tcggcaccag cgcaagtccg gcggccccgg acccgcaccc
     2581 aacatcgagc acggtgccgc agtctggtcc caacaactcc agcgccgcgc gccgcgatgg
     2641 ggtgtcttcc ggagccgccg gcggcacgaa gcgagccggg tcgtgccggt tggggtcctg
     2701 cggagcggcg gtccggatct ccgggggaat tgcccgggcc tccagcagct cgcgccagcg
     2761 gagggtcgcc gggccacccg tgagtggctt tcggtgctgg aacactgtta cacactcaca
     2821 aggcgcgtag cggccactcg cacctcgacg ccgtcaccga tgatgccagc gaagccttca
     2881 ggcagggccg catagtggac ctcccgggcg agtacctcgc cggcgatgaa ctgctcgtgc
     2941 tcccgggccg ccgccaggac catcggcggg gcgtcgatgg tgagcgcgat ccggtcggtg
     3001 acgtccagtc cggcctgccg gcgggcctgc tgaacaaccc gtaccaggtc ccgggcgaga
     3061 ccttccgcgg ccagctccgg cgtgatctcg gtttggagca ccaccagccc ggatccggcc
     3121 ggcagggcag cggtgtcagc ggggtccgcg gcggccagcc gctcggagta ttccccgtcc
     3181 agcaacggga tcccggcagc gctgaggacc ccgttcgggt cacgttccca gtccccctcc
     3241 ttgaccgccc ggatgacctt ctgggtgtcg ccgcccagcc ggggcccgca ggcccgagcg
     3301 ttgacggtga gctcgaaacg gccatacgcg ctgacgtcct cggtgagctc taccgagcgg
     3361 acgttcactt cgtcgcggat caagtcggtg aacggtgcga gggtgtcggc atcaggcgcc
     3421 gccacgatga gcgcggagag cggctggcgg acccgcagcc ctcgcgcctt gcgcaacgac
     3481 aacgcggtgg acaccacctg acgcacccga tccatcccgg ccaccagctc gcgatcttgc
     3541 ggcagatggg tcggatcggg ccagtcggtc aggtggactg agcgctgccc ggtcagcccg
     3601 cgccagatcg cctcggtgct cagcggtagc agcggagcag ccagccggca ggtcagctcc
     3661 agcacggtgt gcaacgtatc g
//
LOCUS       DASVXZ010000211         1741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_382021, whole genome shotgun sequence.
ACCESSION   DASVXZ010000211 DASVXZ010000000
VERSION     DASVXZ010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382021"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..842
                     /locus_tag="VF788_04155"
                     /pseudo
     CDS             1..842
                     /locus_tag="VF788_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228345.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
     gene            1037..>1741
                     /locus_tag="VF788_04160"
     CDS             1037..>1741
                     /locus_tag="VF788_04160"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX8933382.1"
                     /translation="MNDVVPFGVIIVVISVAGLLAVLSNRVSERIRIPAPLIFLVAAA
                     VASDLFPSLGQLPVVTVQRVVTVMLILLLFDGGMHIGWRRFRAAGGPVLWIGVVGTVV
                     TAVGVAVLAHLVFGFDWRGALLLGVALAPTDPAVVFSVLGRREISGRSGTLLEGESGV
                     NDPVGIAAMAALLAAGTAGGWHAVGAGVREFLLEMVVGACVGVAGGFVLSVAMRRLPL
                     PSGALYPLRTLLGAGAI"
BASE COUNT          264 a          544 c          594 g          339 t
ORIGIN      
        1 gtcggtgacg ccgcgaccac cctgccgcac tgatcccgct gctggttcac aaggacgacc
       61 ggtcctggcg ggagagcatc gagtccgatg tgacccgctg gtgggagacc ttggcgatgg
      121 aagccggtgt cgaggcggac ccgatcaacc ccatgcggct gttcgccgag ctgaacccgc
      181 gaccgcccga cgatgcgatc gtcaccgcgg actcgagatc agcggtcaat tggtacgcgc
      241 gtcagctgcg tttccgcccc agcatgcgcg gctcgctgtc gctcaacccg gccaccatgg
      301 gacccggcgt gccctatggg atcggcgcga aattcggctg cccacaccgg ccagtgatcg
      361 tgttcgccgg tgacggcgcg atgcagatga acggcctcgc cgagctgatc accatcacac
      421 gatactgggc ggagcagtgg tcagacccga ggttgatcat tgccgtgcta cacaacgatg
      481 atctgaacca agtcacctgg gagatgcgtg caatgaccgg cgcccccaag ttcgtcgagt
      541 cgcagagcct ccccgatgtg gactatgcgg gcttcgccgc cggtctggga ttgcaagcca
      601 ttgcggttga caagcccgcc gatatcgccc cggcttggaa caacgcattg agcgcccacc
      661 ggcccacact gctggacgtg cgctgcgatc ccaacgtgcc gccgatacct ccccacgcca
      721 ccttcgacca gatgaccagt gccgcgaggg ccctactcgg cggcgacgag gaccgctggg
      781 gtgtgatcaa acaaggtgtg aagaccaaac ttcaggaatt cttgccacac cgccctacct
      841 gaggagcctc acgaccagtt gggttctgcc cagccccgtg tactggatcc agaaacggat
      901 catcggcgga gccgacccta tcgagctggc aagaacaatt ccacggtcga tctgcaggga
      961 actgggatcc tcactagcgt gacctcgcgt gtatctgcag tcctgattca gacacccggt
     1021 gatttcgggg accacggtga atgatgtcgt tccgttcggc gtgatcatcg tggtcatcag
     1081 cgtggctggg ctgctcgcgg tgttgtccaa ccgggtcagc gaacggatcc ggataccggc
     1141 tccgttgatc ttcctggtgg ccgctgcggt cgcctcggac ctcttcccgt cgttggggca
     1201 gctgccggtg gtcacggtgc agcgcgtggt caccgtgatg ttgatcctgt tgctgttcga
     1261 cggtggtatg cacatcggct ggcgccggtt tcgcgccgcc ggtggcccgg tgttgtggat
     1321 cggtgtggtg ggcaccgttg tcaccgcagt gggggtggcg gtattggcgc acctggtgtt
     1381 cgggttcgac tggcggggcg cgctgctgct gggtgtcgcg ctggccccta ccgacccggc
     1441 ggtggtgttc tccgtgctgg gtcgccggga gatttctggc cggtccggca ccctcctgga
     1501 gggcgagtcc ggagtcaacg acccggtcgg aatcgccgcg atggccgcgt tgctggccgc
     1561 gggaaccgcg ggcggttggc atgccgtggg tgcaggagtg cgcgagttcc tcctggaaat
     1621 ggtggtcggc gcttgtgtcg gtgtcgcggg tggatttgtg ctctcggtgg cgatgcgccg
     1681 gctaccgctg cccagcgggg cgttgtatcc gctgcggacc ctgttgggcg ctggcgcgat
     1741 t
//
LOCUS       DASVXZ010000212         3881 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_202781, whole genome shotgun sequence.
ACCESSION   DASVXZ010000212 DASVXZ010000000
VERSION     DASVXZ010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3881
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202781"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..759)
                     /locus_tag="VF788_04165"
     CDS             complement(<1..759)
                     /locus_tag="VF788_04165"
                     /inference="COORDINATES: protein motif:HMM:NF015655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamine synthetase]
                     adenylyltransferase/[glutamine
                     synthetase]-adenylyl-L-tyrosine phosphorylase"
                     /protein_id="HEX8933383.1"
                     /translation="MATEGRRAGFSLARLGLTDDGATETVSRLGWWDDGRLRHDVESA
                     LWALSRAPDPNLALRALARLSRAAGQGWPELNAALCHDPDVRGRLLGLLGSSTALGDH
                     LIAHPQRWHGLVGPDVGQPGWAARATQRLLAAVGVDPEEPPDGGPVRASVVGVMAQRA
                     LREVYRDLIAELAAADLASVVEPELPVVPFEQVGEALAELAIGVVRSALAVAITELVP
                     GGQPPRLAVIGMGKCGGGELNYVSDVDVIFVGGSE"
     gene            complement(773..1531)
                     /locus_tag="VF788_04170"
     CDS             complement(773..1531)
                     /locus_tag="VF788_04170"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020643713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEX8933384.1"
                     /translation="MRTRLLVVQPSDVDPAERLGEWLVDAGADLIMCRPATDGVPERI
                     GGIDAVVCMGGEMGTHDDTDHPWLAAVRWLLADAVTRRLPVLGVCLGGQLLAAATGGA
                     VRRATGGPEIGTLLIAKRDAAAHDPLFAQLPLTPDVIQFHYDEIHQLPPGATLLASSP
                     RYPNQAFRVGAAGYGLQCHIETSPATVLSWAHRDATGIFPAGQLDPDRLEQVHIDIAQ
                     AWQPFAARFVALAVGELAPAGGFEGRQALPLLRS"
     gene            complement(1707..3050)
                     /gene="glnA"
                     /locus_tag="VF788_04175"
     CDS             complement(1707..3050)
                     /gene="glnA"
                     /locus_tag="VF788_04175"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003098222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEX8933385.1"
                     /translation="MDRQQEFVLRTLEERDIRFVRLWFTDVLGYLKSVSVAPAELEGA
                     FADGIGFDGSAIQGFARAYESDMIAKPEPATFQVLPWENPRGEHYSARMFCDITMPDG
                     SPSWADPRHVLTRVLSRAAEAGFTCYVHPEIEFYLLRDLPDNGAEPVPADSGGYFDQA
                     SHDAAPHFRRHTIEALEQMGISVEFSHHEGAPGQQEIDLRYADALTMADNIMTFRYVV
                     KEVAITQGVRASFMPKPYTAQPGSAMHTHMSLFEGDRNAFHDDDDPYELSKTGRAFVA
                     GVLRHAREITAVTNQWVNSYKRLIIGGEAPTNVCWGHANRSALVRVPMYSPGKASSRR
                     VEIRTPDSACNPYLAYAVILAAGLRGVEQGYELPPAAEDDVWSLSEPERRAAGYAPLP
                     QNLSEALVEMENSELVAQTLGEHVFDFFLRNKRAEWDNYRRYVTPYELRTYLPVL"
     gene            3111..3788
                     /locus_tag="VF788_04180"
     CDS             3111..3788
                     /locus_tag="VF788_04180"
                     /inference="COORDINATES: protein motif:HMM:NF018822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LppX_LprAFG lipoprotein"
                     /protein_id="HEX8933386.1"
                     /translation="MRLVALFAALIMSLIIALVTACGGSLGKTANLPQGTTVLADAAK
                     AMRGVNTTHFAFDVQGDTPGVQLRSADGQLTREGSAKGTAKVDEGRQLLELQFVIIGQ
                     DLYLRPPTGPVQKLPLSFAGSVYDPSVILNPDKGIAAALASGKDVTTEEREQVDGVDT
                     YRLKVTFPAQPMGTLVPGLAVDKASEVWVAVQGSRLIKAQFPTTTGSVTAHFSEYDVP
                     VQITPPI"
BASE COUNT          666 a         1339 c         1282 g          594 t
ORIGIN      
        1 ctcggaacca ccgacgaaga tcacgtcaac gtcggagacg taattgagct cgcccccgcc
       61 gcacttgccc atcccgatca cggccagtcg tggcggctgc ccgcctggaa cgagctcggt
      121 gattgcgacg gccagtgcgg accgcaccac gccgatcgcg agttcggcga gtgcctcacc
      181 gacctgctcg aagggcacga ccggcagctc aggctccact accgatgcta ggtcagccgc
      241 cgctagctca gcgatcagat cgcggtaaac ctcgcgcagc gcgcgctggg ccatgacgcc
      301 gaccaccgag gcccgcactg ggccaccatc cggcggctcc tcggggtcca cgccgacagc
      361 cgcgagcagc cgctgagtgg cgcgggccgc ccaacccggc tgacccacgt ctgggccgac
      421 caatccatgc cagcgttgcg ggtgagcgat gagatgatct ccgagcgcgg tcgacgagcc
      481 cagcagcccg agcagcctcc cgcgcacgtc cgggtcgtgg cacaacgcag cgttcagctc
      541 aggccatcct tgcccggctg cccggctgag ccgagccagt gcgcgcagcg ccagattcgg
      601 gtcaggcgcc cgagacagtg cccatagggc gctctcgacg tcgtggcgga gccgcccgtc
      661 atcccaccaa cccagccttg acacagtctc ggtggcgccg tcgtcggtca gccccaaccg
      721 cgccagggag aatccggctc gcctgccctc cgtcgccaca gcggtcccga cgctagctgc
      781 gcagcaatgg caatgcctgg cgaccctcga agccaccagc cggagccaac tcaccaacgg
      841 ccagcgccac gaatcgggcg gcgaacggct gccacgcctg cgctatatcg atgtgcacct
      901 gttcgagacg atccggatcg agctgcccgg cggggaagat gccagtggcg tcacggtggg
      961 cccaggacag caccgtggcc ggcgacgtct caatgtgaca ctgcaggcca tagcccgcag
     1021 cgccgacccg gaaggcctga ttcgggtacc gcggggagga ggcgagcagg gtggcccccg
     1081 ggggcagctg gtggatctcg tcgtagtgga actggatgac gtccggggtc agcggcagct
     1141 gcgcgaacag cgggtcatgc gcggccgcgt cccgcttggc gatgagcagg gtgccgatct
     1201 caggtccgcc ggtcgcccgt cgcacagcac caccggtggc cgccgccagc agctgcccac
     1261 ccaggcagac cccgagcact ggcagccgac gcgtgacagc gtcggcaagc aaccatcgga
     1321 ccgcggccag ccatggatgg tcggtgtcgt cgtgtgtccc catctcgcca cccatacaga
     1381 ccactgcgtc gatcccgccg atcctttcgg ggaccccgtc ggtcgcaggc cggcacatga
     1441 tgaggtccgc cccggcatcg acgagccact cccccaagcg ctccgcagga tcgacgtcgg
     1501 aaggttgcac cacaagcagt cgcgtcctca cagtggtcag gctaacccga cgggtcggat
     1561 gtgaagacga tttcgacggc gtcgcgcgcg ggacgcaagc cgatgcgtgg cggaccggat
     1621 cggcctccag gaacggctac ccggtgagcc tctacggagc gtgcgcttga cccaccgcgg
     1681 accgtgcaaa ggcgcgacac gccgggttag aggacgggga gataggtgcg cagttcgtat
     1741 ggggtgacgt accgccgata gttgtcccac tcggcccgtt tgttgcgcag gaagaagtcg
     1801 aagacgtgct ccccgagggt ctgggcgacg agctcggagt tctccatctc gacgagcgcc
     1861 tcggagaggt tctgcggcaa cggcgcgtat cccgcggccc ggcgctcagg ctcagacagg
     1921 gaccacacgt cgtcctctgc agcggggggc agctcgtagc cctgctccac gccgcgcaag
     1981 cccgcagcga ggatgaccgc gtaggccagg tagggattac acgccgagtc cggggtgcga
     2041 atctccaccc gccggctcga cgccttgccc ggcgagtaca tcggcacccg gaccagggcc
     2101 gagcggttcg cgtgtcccca gcagacgttc gtgggtgcct cgccaccgat gatcagccgc
     2161 ttgtaagagt tcacccattg gttggtcacc gcggtgatct cccgggcgtg ccggagcacc
     2221 ccggcgacga aggcgcggcc ggttttggag agctcgtaag gatcatcgtc gtcgtggaag
     2281 gcgttgcggt cgccctcgaa caggctcatg tgggtgtgca tcgccgagcc tggctgggcc
     2341 gtgtaaggct ttggcatgaa cgaggcgcgc actccctggg tgatcgcgac ctccttcacc
     2401 acgtatcgga aagtcatgat gttgtcggcc atggttagcg catcggcgta gcgcagatcg
     2461 atctcctgct ggcctggagc gccctcgtga tggctgaact cgaccgagat gcccatctgc
     2521 tccagcgctt cgatggtgtg ccggcggaag tgtggagcgg catcgtggct ggcctggtcg
     2581 aagtatccac ccgagtcggc gggtaccggt tcggcgccgt tgtcgggcaa gtcgcgcagc
     2641 agatagaact cgatctcggg gtgcacgtag caggtgaaac cggcctccgc ggcccgggac
     2701 agcacccggg tcagcacgtg tcgcggatcc gcccaggaag gcgagccgtc gggcatcgtg
     2761 atatcgcaga acatccgggc cgagtagtgc tcaccgcgcg ggttctccca cggcagcacc
     2821 tggaaggtgg cgggttccgg cttggcgatc atgtcggact cgtatgcccg ggcgaagccc
     2881 tggatggccg aaccgtcgaa accgatgccg tcggcgaagg ccccctccag ctccgccggt
     2941 gccaccgaca ccgacttcag gtacccgagc acatcggtga accacaaccg aacgaaccgg
     3001 atatcgcgtt cctccagcgt gcgcagcacg aactcctgct ggcgatccat agcgcgaagg
     3061 gtagaggacg atcggtgacg gcaccgtagt ctgcccccta cgatggcacg atgcgccttg
     3121 tcgctctgtt cgccgccctc atcatgtcgc tgatcatcgc cctagtcaca gcttgcggcg
     3181 ggagcctcgg aaagaccgca aaccttcccc agggcaccac ggtgctcgcc gacgccgcta
     3241 aggcgatgcg cggggtgaac accactcact tcgccttcga cgtccagggt gacacgccgg
     3301 gggtgcagct gcgctctgcc gacggccagc tgacccggga gggatccgcc aagggcaccg
     3361 ccaaggtgga cgagggcagg caactcctcg aactccagtt cgtgatcatc ggtcaggacc
     3421 tttatctgcg tcccccgacc gggccggtcc agaagctgcc gctgtcattc gccggttcgg
     3481 tgtatgaccc ctcagtgatc ctcaacccgg acaagggcat cgcggcggcg ctcgccagcg
     3541 gcaaggacgt caccaccgag gagcgcgagc aggtcgacgg cgtggacacc taccggttaa
     3601 aggtgacctt tccggctcag ccgatgggca ccctggtacc cgggttagcc gtcgataagg
     3661 ccagtgaggt ctgggtcgcc gtccagggtt cccggctgat caaggcccag ttcccgacca
     3721 ccaccggcag cgtcaccgcc cacttctctg aatacgacgt cccggttcag atcaccccac
     3781 cgatctgagc ccggtccatc ttgatgagca ctacggccag cccggtgcgg cgtcgcgggg
     3841 tcgcgctggt cgctggcgcg cttgtcacac tgctggcagc c
//
LOCUS       DASVXZ010000213         2737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_830275, whole genome shotgun sequence.
ACCESSION   DASVXZ010000213 DASVXZ010000000
VERSION     DASVXZ010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_830275"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VF788_04185"
     CDS             complement(<1..369)
                     /locus_tag="VF788_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933387.1"
                     /translation="MGRLRIAKRRRRRVRVGAPDPALTGLSGMVAVTELCEHWTWSGR
                     WMPRWDRSTSELAGTRRGNCWLGWLRRSWRGEDHLVGLDRQRADVAGQALMPIAGLCS
                     TTAGGLARRITDSQWVAVETG"
     gene            1282..1887
                     /locus_tag="VF788_04190"
     CDS             1282..1887
                     /locus_tag="VF788_04190"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HEX8933388.1"
                     /translation="MYLQKVMWLAPIVAAAIAAGGLLAGCNGATATRPATAPPPTGRV
                     TPAAGLKHHNQDDVVFLQKMLPHHVQTGTMSDLAHSKSTLPKVKTIALRIKAAQDQQI
                     TRIHNLLSAWDSPASGGSSSDQVPGMLSDQQIQQLKAATGNAFDQLFLQLMITHQQGA
                     IQMSQTELAQGSDPQARRLAQDIITGQQGEINQMQKLIQPS"
     gene            complement(1920..>2737)
                     /locus_tag="VF788_04195"
     CDS             complement(1920..>2737)
                     /locus_tag="VF788_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010309675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933389.1"
                     /translation="RHAARSRPKCAGRPPTVRSIRALVLRLVRENPSWGYRRLHGELL
                     VLGIKVAASTVWKMLKEAGINPAPERACSTWADSLRSQADALLACDFLETVTLTGARL
                     SMLAVIEHANRRVRVLCASAHPTAAWVAQAAKNLVMDLEDAGCRARFLIRDRDGKFPA
                     LFDAVLKDADIDVVLSGVRMPRMNSIMERWVQICRRELLDRTLIWNQQQLLCALREFE
                     QFYNGHRPHQGLANARPLYPLPAQIADPDKLDRLDIRRRDRLGGILHEYQHAA"
BASE COUNT          524 a          923 c          808 g          482 t
ORIGIN      
        1 cccggtctcc accgcgaccc actgcgagtc ggtgatccgc cgggccagcc cacccgccgt
       61 cgtcgaacac agtcccgcaa tcggcatcaa cgcctgaccg gccacatccg cgcgctgccg
      121 atccaacccg acaagatgat cctcaccccg ccagctgcgc cgcagccaac ccaaccaaca
      181 gttgccccgc cgagtacccg cgagctcgct ggttgatcgg tcccaccgcg gcatccaacg
      241 ccccgaccac gtccaatgct cacacaactc ggtgaccgcg accatccccg acaaccctgt
      301 cagcgccgga tccggcgcgc cgacccgtac ccgccgcctc cgccgcttgg cgatccgcag
      361 tctgcccacc agataggtgt ccttccaccc gagatgatca tgtcgtcgca aacatcatcg
      421 tcccaggcca cggggcacct atccctattt caccacccgt gtcgcatcgc tactcgcggc
      481 ttcgggtctg aacaacacac aggccgctgt cgaccatgct caccttccgt taacgccctt
      541 cgaggacgct tgcgcgttga gcgaatgtac gccgactgtc tacacccgtg gccggcttgt
      601 gcgacggagc aagtccagtt ggcgtagtga ctagctctaa tcgcccaacg tcggactaca
      661 gaacgtgtct actgtttatg tcggttcggc cataggtcgg tcccaggtgg tacggccgtg
      721 tggtgggaga cgttcattgt tatattcgag aaggttcatg gtactcgtaa gtggacacta
      781 ggattgggga caccatgcga gaagtaatca ttcgttctct ctcggcgacg accgtactcg
      841 gaggactact tttcggtggc atcggcgttg ccgccgctaa cctagcacct gcggcgactc
      901 caacacaggc tgcagagacg tgcccccttg gcactttttt ggaacctatg acaggaatct
      961 gcatgccttt ctaattcctc gtcaacgtcg acacaccgcc agatcgggta tgagtgcgtt
     1021 gagcggtcag cgaaggagct cgtcggcgtg atcgccagga tgcggattgg accccaggcg
     1081 acaccggtag gttaaccgac cccgccccgg cattgtgtcg aagggttcgc acccatcgag
     1141 gcgccgtcaa gcggttaaga cgatcgctgt gaccaccgct gtcacgagcg cagaacgact
     1201 tcacggccga catcgctgcg gttggcccat cccgatgccc gttgcctgtc accggccggt
     1261 gcacgaagga gaccgatcaa catgtatctc caaaaagtga tgtggctagc ccctatcgtc
     1321 gctgccgcca ttgccgccgg ggggcttctc gctggctgca atggcgccac tgccaccagg
     1381 ccggccacgg caccgccgcc tactgggcgt gtcacacccg ccgccggcct gaagcatcac
     1441 aaccaggatg acgtggtgtt cttgcagaaa atgctcccgc accacgtcca gaccgggacc
     1501 atgtcagatc tggcgcactc gaagtcgaca ctaccgaagg tgaagactat tgcgctccgg
     1561 atcaaggctg cgcaggatca acagatcacc cggatacaca acctgctgag cgcctgggac
     1621 tccccggctt ctggtggcag tagcagcgat caagtgccgg gcatgctgag cgatcagcag
     1681 atacagcaac tcaaggccgc cacaggtaac gcgttcgacc agttgttcct acagctgatg
     1741 atcacccatc agcaaggcgc aatccagatg tcccaaaccg aactggctca aggcagcgac
     1801 ccccaggccc gccggctggc gcaggacatc atcaccggcc agcagggtga gatcaaccag
     1861 atgcagaaac tgatccagcc gagctgacct tgcacttgcc gaaatcgcgt ccgcgcaggt
     1921 cacgcggcat gttggtactc gtggagaatg ccgccgaggc gatcgcgtct tcgtatgtcg
     1981 aggcggtcca gcttgtccgg atcggcgatc tgtgcgggca atgggtacaa cgggcgtgcg
     2041 ttcgcgaggc cttggtgtgg ccggtggccg ttgtagaact gttcgaactc gcgcagggcg
     2101 cagagcagct gctgctggtt ccagatcagg gtgcggtcca acagctcgcg tcggcagatc
     2161 tgtacccaac gttccatgat cgagttcatg cggggcatcc ggacgccgct gagcacgacg
     2221 tcgatgtctg cgtccttgag aacggcgtcg aatagggccg ggaacttccc atcgcggtcc
     2281 cggatgagga accgcgctcg gcagccggcg tcctcgaggt ccatgaccag gttcttcgcc
     2341 gcttgtgcca cccacgcggc ggtcgggtgc gcactcgcgc acaggacccg gacccgtcga
     2401 ttggcatgct cgatcaccgc gagcatggac aaccgcgctc cggtcaaggt gaccgtttca
     2461 agaaagtcgc aggccagcag ggcgtcggct tgcgagcgca gggagtcggc ccacgtactg
     2521 caggcacgct cgggcgccgg gtttatcccg gcttccttca acatcttcca caccgtggac
     2581 gcggccacct tgatgccaag caccagcagt tcgccgtgca ggcggcgata gccccagctg
     2641 ggattctccc gcaccaggcg cagcaccagg gcacgaatcg agcgcacggt cggcggccgg
     2701 cccgcgcact tgggccggga ccgggccgcg tggcggc
//
LOCUS       DASVXZ010000214         1801 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_382109, whole genome shotgun sequence.
ACCESSION   DASVXZ010000214 DASVXZ010000000
VERSION     DASVXZ010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382109"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..767)
                     /locus_tag="VF788_04200"
     CDS             complement(120..767)
                     /locus_tag="VF788_04200"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX8933390.1"
                     /translation="MPDRCFPSRTRPPARSPVLMLGCPRCSPTTSRASQRRRRCRVRY
                     LHDHSGAYGEGGIAGPYYESGDAIMVRAGNADIHSVADLNGKTVATEASSTAVLALQK
                     AAPGANALLFQEDAQCVAAVQQGRAHAYVLDQGILISDASTNPAVKVVGAPFTHKPYG
                     IGLPLGDPTAKQFVNDWLKKIYAEGSWTKLWKATIGTVVKGHAPAPPPIGSVAGS"
     gene            complement(845..>1801)
                     /locus_tag="VF788_04205"
     CDS             complement(845..>1801)
                     /locus_tag="VF788_04205"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334219.1"
                     /note="catalyzes the formation of D-glucono-1,5-lactone
                     6-phosphate from D-glucose 6-phosphate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEX8933391.1"
                     /translation="VHEVFDESQVFRIDHFLGKEAAQNILAFRFANGLFEPIWHRNNI
                     DHVQIDIPEALGLDLRANFYESTGAYKDMVVTHLFQVLAFVAMEPPTALEPRAISEEK
                     NKVFRSMLPINPADVVRGQYDGYRDEEGVAPDSETETFIALKASLDNWRWAGVPFYLR
                     TGKRMAEGLRIISIAFKEAPRTMFPPGSGVGTQGPDHLTFDLADASRVSLSFYGKRPG
                     PGMRLEKLSMQFSTQETDSAGDAMEAYERLIMDAMRGDHTLFTTAEGIESLWERSAPL
                     LEDPPPIKVYGRGTWGPNSIHQLIAPNAWRLPFERAWRNKTG"
BASE COUNT          298 a          583 c          590 g          330 t
ORIGIN      
        1 ccccgcgcac cgctcatgca acagttccat gaatcccccc agacgaaccg gcagaccctg
       61 acacgcggcc aggcgagatt gtcgatgaca acgtgcttgc ccgcgcctcg cgcgacggct
      121 caggatcccg cgaccgagcc gattggcggc ggggcagggg cgtggccttt cacgactgtg
      181 ccgatggtcg ccttccacag cttcgtccag ctaccttcgg cgtagatctt cttcagccag
      241 tcgttgacga actgtttggc cgtcggatcg ccaaggggca gtccaatgcc gtagggcttg
      301 tgggtgaacg gcgcacccac caccttgacc gcagggttgg tactggcatc agagattagg
      361 atgccctggt caagtacgta ggcgtgggcc cggccctgct gcaccgcggc cacacactgg
      421 gcgtcctcct ggaacaacag cgcgttggcg cccggcgcgg ccttctgcaa tgcgagcacc
      481 gcggtggagc tcgcctcggt ggcgaccgtc ttgccgttga ggtcggcaac gctatggata
      541 tccgcgttgc cggccctgac catgatcgca tcgccggact cgtaatacgg gcccgcaatg
      601 ccaccttcgc cgtacgcgcc ggagtgatcg tgtaggtagc gaacacggca tcgacggcgc
      661 cgttggcttg cccgcgatgt agtgggcgag catctgggac aacccagcat caaaaccggt
      721 gaccttgccg gtggtcgggt ccttgaggga aaacagcggt ccggcatcgg tgccaccaac
      781 ctcgagagcg ccacggcgtc tgaccttgtc aagacacgac tcgaggtgag gtttgcggga
      841 gctttcagcc cgtcttgttc cgccaggctc gctcgaaggg cagcctccac gcgttcggtg
      901 caatgagctg gtggatcgag ttgggtcccc aggtgccccg cccgtagacc ttgatcggtg
      961 gcgggtcctc gagtagcggc gccgagcgct cccacagtga ctcgatgccc tctgcggtgg
     1021 tgaacagggt gtggtcacca cgcattgcgt ccatgatcag ccgctcgtag gcctccatcg
     1081 cgtcgcccgc cgagtcggtc tcctgggtgg agaactgcat ggacagcttc tccagccgca
     1141 ttccgggtcc ggggcgcttg ccgtaaaacg acagcgagac ccgcgatgcg tcggcaaggt
     1201 cgaaggtgag gtggtcgggt ccctgcgtac ccaccccgga cccggggggg aacatggtcc
     1261 gcggcgcctc cttgaaggcg atcgagatga tccgtaggcc ctcggccatg cgtttgccgg
     1321 tacgcaggta gaacggcacg ccggcccagc gccagttgtc caggctggct ttgagcgcaa
     1381 tgaacgtctc ggtctcggaa tcgggtgcga ccccctcctc atcgcggtag ccgtcgtact
     1441 ggccccggac cacgtcggcg gggttgatgg gcagcatcga ccggaagacc ttgttcttct
     1501 cctcgctgat cgcgcggggt tccagcgcgg tcggcggctc catcgccacg aaggccagca
     1561 cctggaacag gtgcgtcaca accatgtcct tgtaggcgcc ggtggactcg tagaagttcg
     1621 cccgcaagtc aagcccgagc gcctccggga tgtcaatctg cacgtggtcg atgttgttcc
     1681 ggtgccagat gggttcgaac agcccgttgg cgaagcggaa cgccaggatg ttctgcgccg
     1741 cctccttgcc gaggaagtgg tcgatccgga agacctggct ctcgtcgaac acctcgtgca
     1801 c
//
LOCUS       DASVXZ010000215         2928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_471553, whole genome shotgun sequence.
ACCESSION   DASVXZ010000215 DASVXZ010000000
VERSION     DASVXZ010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471553"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..772)
                     /locus_tag="VF788_04210"
     CDS             complement(32..772)
                     /locus_tag="VF788_04210"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004619 - phosphoglycerate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglyceromutase"
                     /protein_id="HEX8933392.1"
                     /translation="MSVGTLVLLRHGESEWNAKNLFTGWVDVPLSARGEREAVRCGEL
                     MRDAALLPDVVHTSVLRRAITTANLALDAVDRHWIPVRRDWRLNERHYGALQGKNKKQ
                     TLDEFGEAQFMEWRRSYDVPPPPIEAGSEFDQEGDPRYAAGEVPRTECLADVVARFLP
                     YWESAVVPDLRAGHVVLLAAHGNSLRALVKHLDGVSDEDIAGLNIPTGIPLRYDLDDD
                     LRPLVTGGTYLDPEAAVAAAAAVAAQGR"
     gene            complement(1115..1348)
                     /locus_tag="VF788_04215"
     CDS             complement(1115..1348)
                     /locus_tag="VF788_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933393.1"
                     /translation="MAAILAELPDMWRSALTAHVPDPQGRCWACRDENGISAAWPCLT
                     REVAEEAKYLYEGGLPGTFGGRHAARKVDDWHP"
     gene            complement(2014..2502)
                     /locus_tag="VF788_04220"
     CDS             complement(2014..2502)
                     /locus_tag="VF788_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HEX8933394.1"
                     /translation="MSRPAQLDELIIGVLDEAGLQHEHSGPGSFIITLPGTKKLQTTC
                     RVLVGQHGVLVEAFVCRRPDEAHQDVYRWLLRRNARLYGVHYALDKAGDIYLIGRLAH
                     HAMTAQELDRVLGQVVEAADGDFNTLLEIGFTSSIRREWAWRVARGESLHNLAAFEHL
                     VR"
     gene            complement(2499..>2928)
                     /locus_tag="VF788_04225"
     CDS             complement(2499..>2928)
                     /locus_tag="VF788_04225"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005453017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8933395.1"
                     /translation="ASELGILQQVVFAPPQGGAALVAVYRAADVVAVPSYSESFGLVA
                     LEAQACGTPVVAAQVGGLPVAVADGVSGQLVRSHHPVDWADVLSAVALRPQRREELAT
                     GAAPHARRFSWEHTTEALLRVYADAATAYRVDALEREVAV"
BASE COUNT          489 a         1039 c          920 g          480 t
ORIGIN      
        1 ctcgggtgcc attcgagccc gactcgcggg gtcagcggcc ttgggcggcg actgcggctg
       61 cggcggccac ggcggcctcg gggtcgaggt aggtcccgcc ggtgacgagc gggcgcaggt
      121 cgtcgtcgag gtcgtagcgc agcgggatgc cggtggggat gttcaggccc gcgatgtcct
      181 cgtcggagac gccgtcgagg tgcttgacga gggcgcgcag cgagttgccg tgcgccgcga
      241 gcagcacgac gtgcccggcg cgcaggtcgg gcaccaccgc cgactcccag tacggcagga
      301 accgcgccac gacgtcggcg aggcactccg tgcgcggcac ctcaccggcg gcgtagcggg
      361 ggtcgccctc ctggtcgaac tcggagcccg cctcgatggg cggcggcggc acgtcgtacg
      421 agcgccgcca ttccatgaac tgcgcctcgc cgaactcgtc gagcgtctgc ttcttgttct
      481 tgccctgcaa cgcgccgtag tgccgctcgt tgagccgcca gtcccggcgg accggaatcc
      541 agtgccgatc caccgcgtcg agcgcgagat tcgcggtagt gatcgcgcgg cgcagcacag
      601 aggtgtgcac cacatcaggc agcaacgcgg cgtcgcgcat cagctcaccg caccgcaccg
      661 cttcgcgctc gccccgagcc gacaacggca cgtcgaccca tccggtgaac aggttcttgg
      721 cattccattc gctctcgccg tggcggagca gcaccagagt ccctacgctc atgccagcag
      781 cctgccaggc agggccatcc accatcctgc gaggccccga caccactggg cctgcgtcca
      841 ggccgggagt ttgccctaac ctccataacc ggtcgaggtg cgaatggggc caataagccc
      901 aaaatcaaat ggcccgatcg ggcgctggcc gtgaacgcca ggttgcccgt aaattaatct
      961 acgacgacgg tgtaccggat ccccctgctg acacccccac cgtcgttgca gggaaccgct
     1021 ggtcgcccgc ttcccccgcc ccccgggaaa ggcaggttgc acagtggttc cctgcgttag
     1081 gggtccgctg cgcaggggtt cgttgcacgc caatctaagg gtgccaatcg tcaaccttgc
     1141 gggcggcatg acgaccacca aaggttcccg gaaggccacc ctcgtagagg tacttagctt
     1201 cttcggcgac ctctcgagtc aggcaaggcc aagccgccga gatgccgttt tcgtcgcggc
     1261 acgcccagca gcgaccctgc gggtcaggca catgcgcggt caacgcgcta cgccacatgt
     1321 ccggtaattc ggccaggatc gctgccatgc tcatgtccat ctacctccca gagatcggtg
     1381 catcctacaa ccggccgtca agcccggcac ttcataccag cagtattccg gtccccgacg
     1441 ctgccgttcg ggggataatg acactcagca tctacacgta tacgttccgt agcagtccga
     1501 ccggctatta ctcttcgact caccgaacga ttccatggtc gtcgccagag cagccagggg
     1561 catggagtta cactctccgc gttggtgtga gcacacagtg ttgtcgcgcc aaccgcttct
     1621 ggtgttactc acctagccga agcgtcccat acggcggcga gcgcagccgt tcgccacgcc
     1681 ggttggtgga ccgccgcacg gttggccgtc cagcgtgcca tgtaggccaa tcgggttgcg
     1741 ctgcgaatca actgccatga aggccttgag atccgtccgc ttggctgaga gtgtgtcacc
     1801 gctctcctag ccgctcccac cgcacttcag gcaggtgagc gcaagcccgc ggttcgtcct
     1861 ccccccgtcg gaccgcggcc cgccagggtc tctgggtgcc ccccgcccag ggaagtccgt
     1921 tcacgcggga caacagtggc ggggcgagcc cgagtgtgcg actcccccct ctcccccggg
     1981 ccgccccgcc accgaccccc ggtttaagtg aggtcaacgc accaggtgtt cgaatgcagc
     2041 gagattgtgc agggactcgc cacgggctac ccgccaggcc cattcacgcc ggatcgacga
     2101 ggtgaaccca atctccagca gcgtgttgaa atcaccatcg gcggcctcga ccacctgacc
     2161 cagcacgcgg tccagctcct gcgcagtcat cgcgtgatgg gctagtcggc cgatgagata
     2221 aatgtcaccg gccttgtcca gcgcgtagtg caccccgtag agccgcgcat tgcggcgcag
     2281 taaccagcgg tagacgtcct gatgtgcctc gtctggacgc cggcacacaa aggcttctac
     2341 cagcactcca tgctggccaa ccagcacccg gcaggtggtc tgcaatttct tggttcccgg
     2401 cagggtgatg atgaagctcc ccggcccgct gtgttcgtgc tgaagcccgg cctcgtccag
     2461 gaccccgatg atgagctcat ccagctgcgc aggacggctc acaccgccac ctcgcgttcc
     2521 agggcgtcta cccggtaagc ggtcgctgcg tccgcgtaga cccgcagcag tgcctcggtc
     2581 gtgtgctccc aggagaaccg ccgtgcatgc ggagcggcac cagtcgccag ttcctcgcgg
     2641 cgttgcgggc gcagtgcaac ggcggacagc acgtcggccc agtcaacggg atggtggctc
     2701 ctcaccagct ggccggacac tccgtcggcc accgcgaccg gcaggccacc tacctgggcc
     2761 gcgacgaccg gcgtcccgca tgcctgcgcc tcgagggcga cgaggccgaa cgactcgctg
     2821 taactgggga ctgccactac gtcggcggct cgatacaccg cgaccagcgc ggcacctcct
     2881 tgcggaggcg cgaacaccac ctgttggagg attcccagct cgctggcg
//
LOCUS       DASVXZ010000216         1604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1188870, whole genome shotgun sequence.
ACCESSION   DASVXZ010000216 DASVXZ010000000
VERSION     DASVXZ010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188870"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            531..974
                     /locus_tag="VF788_04230"
     CDS             531..974
                     /locus_tag="VF788_04230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933396.1"
                     /translation="MAKENPTWGHRRVQGELVRLGHWIAASTVWQILHDAGIDPAPRR
                     PTPTWRQFLTAQAQQSWPWTFAHVDTVFLTRIYALIAVEHGSRRAHLAGVTAHPTGAS
                     TTQAARNLLMDLGDRVATLNRLLRDRILGSPGRSTRSSPQTASGS"
     gene            1019..1264
                     /locus_tag="VF788_04235"
     CDS             1019..1264
                     /locus_tag="VF788_04235"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933397.1"
                     /translation="MIGTLRRELFDRILIVNECRLRRIFTAYLHHFNAAQPHQALAQL
                     TPAQAETQPPHVINLAGHQVRRRPILDGLTSEYQITA"
BASE COUNT          290 a          557 c          470 g          287 t
ORIGIN      
        1 tgctgtgcgt ggcgttggtt ggtcaggatc gcccaaggcc ccccggggtc cgcaggacgc
       61 agggtcgtct gtgtggtcgg cggcgcggtc gtgctcatcc ctacctgtag ggctcgaaaa
      121 ctcgacgcag acgtcctggc ctgcgctctc gcgtgctgac cggtcatgga tcatcatggg
      181 atgctgttgc tgtcgatctt gtaccagctt gtgcgctgtc tgctcgatct gaccgctgtg
      241 ctgatgcggc gagacctgag caaggatgcc gaactgctgg tcttgcggca cgagaacact
      301 gtgttgcgcc gccaggtcgc ccaggtccgt tacgcgcccg tcgaccgcgc gtggctgacc
      361 actttatccc agctgttgcc gcgtcgccgc tgggccgagg tctttgcggt aactcccgcc
      421 acggtcctgg tctggcaccg caagctggtc tcgcgcaagt gggactacac cgcccgccgc
      481 cagcccggac gtccctcgac cgctgcggcg atcaagaaac tggtgatgcg atggcaaagg
      541 agaaccccac gtggggccat cgacgggtgc agggcgagtt ggtccggctc ggtcattgga
      601 tcgccgcctc gaccgtgtgg cagatcctgc atgacgccgg cattgatccc gcgcctcgcc
      661 ggccgactcc gacctggcgc cagttcctca ccgcccaagc ccagcagtcc tggccgtgga
      721 ctttcgcgca cgtggacacc gtgttcctca ccaggatcta cgccctgatc gcggtcgagc
      781 acggttcccg ccgggcgcat ctagccggtg tgaccgcaca cccgactggt gcatcgacca
      841 cccaagccgc ccggaacctg ctgatggacc tcggcgaccg tgtcgccacc ctcaaccgcc
      901 tgctccgaga ccggattctc ggttcaccag ggcgttcgac gcggtcttcg ccgcagacgg
      961 catccggatc ctgaccagtc caccccgagc gccacgggcg aatgcgatct gcggacgcat
     1021 gatcggaacg ctgcgccgcg agctgttcga caggatcctg atcgtcaacg aatgccgcct
     1081 acgccgaatc ttcaccgcct acctgcacca tttcaacgca gcacagccac accaagcgct
     1141 ggcgcaactc acaccggccc aggccgagac ccaaccccca cacgtgatca acctggccgg
     1201 tcaccaggtt cgccgcagac caatcctcga cgggcttacc agcgaatacc aaatcacagc
     1261 atgatcagac acgaacaccc ataaacctac aggtcaaacc cacaacccta tattcgagcc
     1321 ccacacgtgg gttcaaatcc agccacccgg acagcaaaac accagttcag aggctgtgtg
     1381 cgatcaagtc gcgatggtct caggtgacca actgcgtgac tatcggatcc tttttcaggt
     1441 ggtgcatccc tgccgttggt cctctctgcg gttcacggtg gtgatcgcct gtcggtcgtg
     1501 gcttcgggaa ccgagaccag gccgacgacc atgaggtgaa gccggcaacg ctgatcctcc
     1561 cggcgaggcc cagaaaccag cacgtcgggg cgctgaacgt taat
//
LOCUS       DASVXZ010000217         3521 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1188908, whole genome shotgun sequence.
ACCESSION   DASVXZ010000217 DASVXZ010000000
VERSION     DASVXZ010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188908"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..712)
                     /locus_tag="VF788_04240"
     CDS             complement(<1..712)
                     /locus_tag="VF788_04240"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HEX8933398.1"
                     /translation="MSADLTLGLFHANDRNPGGYILADKKTHLVHRHVDKTSARYPAD
                     ANNAWAIAAWSTQFTRLLCDIVDNRDVDPSEELLFGDIIDAAVDDQHLRVVADLIDPE
                     NGFYWDIADPEKYFELLQTGRRGGSAGSHGALSHRVSPPSHFARRNFGRPEQPAFFIS
                     YSSVDRSYAENLKALLGAYGAETHIDTVGMGSGPIDAQIGRMIQQSSSFVLLLSRSSL
                     QSDWVQAELSHVRFSPGYP"
     gene            892..2517
                     /locus_tag="VF788_04245"
     CDS             892..2517
                     /locus_tag="VF788_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933399.1"
                     /translation="MTLPRTAADVLADHVVFEVECIDRMYLNAYVPQLQRELGVIGYL
                     RGQLGCSINSTAPLAAVTEAFNAAVRRFAAEQQVPLIDFVRGQRKDDVMHEQLARFTG
                     TEGVLFIGRAQEKARVFRTVRRRDSAGKPYPWIVPTTAVINHWYFYCVDADFGPFFLK
                     YVSYFPYNAKLCINGHEWAKRQAAKAGIRLKALDNGFAACGDVPRLQGLCDSFGPAHI
                     EALLQKWQAILPCPFAATDRAAGYGYDISILQAEFSLTQVLDQPVSGRVFFEQVIRDN
                     LDIGRPDHVGLVFDRRVRKDTPGRFRTRVITEGVTPSLHVDYKNSRVKQYHKLGRALR
                     TETTINDTRDFGIGKRLHNLPALRKVGFTANRRMLRTQRLSHDPADGAAALAAITGPV
                     TTGTGQRIPGMGFTSPRVQALLSTLCIFRLLPRGFTNRDLRDHLAPLLGKLPEAITSG
                     QATYDLRRLRHHGLIERIPKTHRYQVTDTGLRYALFLTRAHNRILRTGLAKLTDPHPP
                     LSSKLRAADRAYQAALDDLTQGAGLIARTHTHH"
     gene            complement(2514..3308)
                     /locus_tag="VF788_04250"
     CDS             complement(2514..3308)
                     /locus_tag="VF788_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933400.1"
                     /translation="MWVFALGAIVVRASRLAPTFSVVLLGQLAFATFGIFEGLRADNP
                     GVFNAIAVSLAAPLLYWVLVWAVDLDIAKSVLRCLAIMTSILATTIVLYVANQKGIIP
                     QIVPSSILTDSGSGFRDLGTHTELRFYGLSTLAAAGPMWIASLLVPPDDLMPPVLLRA
                     YAATAAMVAVLVGGRQAIVLTMVAAPLTLWCCSRAIGRAKHPRYVLGALAAAAGRRSL
                     RMFAGSLGVLGVVYLVGQLEGLAGESCQDRVKLCRSSQVNKGGSFG"
BASE COUNT          670 a         1137 c         1103 g          611 t
ORIGIN      
        1 ccgggtagcc gggcgagaac cggacgtggc tcagctccgc ctgaacccag tcggactgca
       61 gcgacgaccg cgagagcaac aggacgaagg agctcgactg ctgaatcatt cggccgatct
      121 gggcgtcgat cggaccgctg cccatgccca cagtgtcgat gtgtgtctct gcgccatacg
      181 cgcccaacag cgccttcagg ttttcggcgt aggagcggtc cacgcttgag tagctgatga
      241 agaaggccgg ctgctccggt cggccgaagt tacgacgcgc gaagtggctg ggcggcgata
      301 cccggtggct caacgcgcca tgagaccctg ccgagccgcc ccgccggccg gtctgcagca
      361 gctcgaagta cttctccgga tccgcgatgt cccagtagaa tccgttctct gggtcgatca
      421 ggtcggcgac cacacgcaag tgctggtcgt ccaccgcagc gtcgatgata tctccgaaga
      481 gcagctcctc cgatgggtcc acgtctcggt tgtcaacgat gtcacagagc agccgtgtga
      541 actgcgtgct ccaagccgcg atcgcccaag cgttgttggc atcggcaggg taccgtgccg
      601 acgtcttgtc cacgtgcctg tgcaccagat gcgttttctt gtcggcgagg atgtacccgc
      661 cagggttccg gtcatttgcg tggaacagcc ccaaggtcag gtcggcggac aactgctggt
      721 gaaggtctaa cggggcttcg ccccagcccg acgaggcgtg tggtggtggg ctgggtgggt
      781 ctggaggctc tggtcggtgg gtggtgaccg tgactggctg tgggccgtcc ggtgtatgga
      841 ccgcgtggtg cggtagttag ccttgcggct cccgtccgac cggagctggt gatgacgtta
      901 ccccgtaccg ctgctgatgt gcttgccgat catgtggtct ttgaggtgga gtgcatcgac
      961 cgtatgtatc tgaacgccta cgttccgcag ttgcagcggg agttgggggt gatcggatac
     1021 ctgcgtgggc agctcgggtg ctcgatcaac tccacggctc cgttggcggc ggtgaccgag
     1081 gcgttcaacg ctgcggtacg tcggttcgcg gccgagcagc aggtgccgct gatcgacttc
     1141 gtcaggggtc agcgtaagga tgacgtgatg cacgagcaac tggctcggtt caccggcacg
     1201 gagggggtgt tgttcatcgg gcgggcgcag gagaaggcac gggttttccg tacggtgcgt
     1261 cgccgggatt cagctggcaa gccctacccg tggatcgtgc cgacgaccgc ggtgatcaat
     1321 cattggtact tctactgtgt ggacgccgac ttcggcccgt tcttcctgaa gtacgtgagc
     1381 tatttcccgt acaacgcgaa gttgtgtatc aacgggcacg agtgggctaa acggcaggca
     1441 gcgaaggctg ggatccgttt gaaggcgttg gacaacgggt tcgccgcgtg cggcgacgta
     1501 ccccggttgc agggcctgtg cgatagtttc gggccggcgc acatcgaggc cctgctgcag
     1561 aagtggcagg cgatcttgcc gtgtccgttc gccgctaccg accgggctgc gggctacggc
     1621 tacgacatct cgatcttgca ggcggagttc tccttgaccc aggtgctgga ccagccggtg
     1681 tcggggcggg tgttcttcga acaggtcatc cgtgacaacc tcgacatcgg ccgtcctgac
     1741 cacgtcgggt tggtcttcga ccggcgggtc cgcaaggaca cccccggccg gttccgcacc
     1801 cgcgtcatca ccgagggggt cacgcccagc ctgcacgtgg actacaagaa cagccgggtc
     1861 aagcagtacc acaagctcgg tcgcgcgttg cggaccgaga ccaccatcaa cgacacccgc
     1921 gacttcggta tcggtaaacg gctgcataac ctacccgctt tgcggaaggt cggcttcacc
     1981 gccaaccggc gcatgctgcg cactcaacga ctcagccacg accctgccga cggagcggca
     2041 gcattggccg ccatcaccgg tcccgtgacc accggcaccg gccaacgtat ccctggtatg
     2101 ggcttcacca gcccccgcgt gcaagccctg ctgtccaccc tgtgcatctt ccgtctgctg
     2161 ccccgcgggt tcaccaaccg cgatctgcgc gaccacctcg cgcccctcct cgggaagctc
     2221 cccgaggcca tcaccagcgg gcaagccacc tacgatctac gccgtctgcg ccaccacggc
     2281 ctcatcgaac gcatccccaa aacccaccgc taccaggtca ccgacaccgg actgcgctac
     2341 gcactgttcc tcacccgagc ccacaaccgc atcctgcgca ccggactcgc caaactgacc
     2401 gatccccacc caccactctc ctccaagctc cgcgctgccg accgcgccta ccaagcagct
     2461 ctcgatgacc tcacccaagg agccggactc atcgcccgaa cccacacaca ccactagcca
     2521 aacgacccac ccttattcac ctgactcgat cgacacaact tgactcgatc ttgacagctt
     2581 tcgccggcca agccctctag ctgaccgacc agatatacca ctccaagcac cccgagcgaa
     2641 ccggcgaaca tccgcagcga acgtcggccc gcagcagcgg caagcgcacc gaggacgtaa
     2701 cgtggatgct tggctcggcc gatagctcgc gagcagcacc agagggttag cggcgcggcg
     2761 accatggtga ggacaatggc ctgacgtccg ccgacaagaa cagccaccat cgccgcggta
     2821 gctgcgtagg cccggagcag gacaggtggc atcagatcat cgggagggac caggagagac
     2881 gcgatccaca tagggcccgc agcagccagg gtcgacaacc cgtaaaaccg tagctccgtg
     2941 tgggtgccga ggtcacggaa ccccgagccg gagtcggtca ggatcgagct aggcacgatc
     3001 tggggtatga ttcccttctg gttggcgaca tagaggacga tcgtggtggc caatatcgag
     3061 gtcatgatgg cgaggcatcg caggacggac tttgcgatgt ccaggtcgac cgcccagaca
     3121 agtacccaat acagcagggg cgcggccagg ctgaccgcga tggcgttgaa gaccccgggg
     3181 ttgtcggccc ggagcccttc gaatatgcca aatgtcgcga aagccagctg acctagcaag
     3241 acgaccgaga aggtaggcgc aagcctggac gcacggacca cgatggcgcc gagtgcgaag
     3301 acccacatca gcccgagcgc tgacaacaac ggaatattgt tggaaactgg tctggccaag
     3361 acgtaggcga agcagcccaa cggaacaaga agcgacagct tgtgcgattc ccggtctttc
     3421 cttcccgggc gggcgggcca gacctcatat caggttcctg atgaagcgct tggtctcggc
     3481 ccagacgacc tcgttggaga agttctgccg gacatgttcg a
//
LOCUS       DASVXZ010000218         8109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_830708, whole genome shotgun sequence.
ACCESSION   DASVXZ010000218 DASVXZ010000000
VERSION     DASVXZ010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8109
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_830708"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(191..985)
                     /locus_tag="VF788_04255"
     CDS             complement(191..985)
                     /locus_tag="VF788_04255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933401.1"
                     /translation="MAVPLLVETVDAIVGVNTHHGTHEVHISSPTGTPIATASISSNN
                     ASYTDLLTWIITHAPGPRLAVSGEQTSSYAAGVARAVAAVGLMVIERDEPHHKHHPDP
                     IDVPSGDRTAAHLDTDRLPTGTDSDRAALRILLSARQDMTITITAQSNRLRALLLSGD
                     DTDRKIARGTLTEITLAGLIRRRQPGDATREHSVRHAEIRRLALAVSAAGRELNANTT
                     QLQAIVDDLVPGLTDRRGIGPVGAAQAIVSLSDPSRVPTQRGARRI"
     gene            1550..3403
                     /locus_tag="VF788_04260"
     CDS             1550..3403
                     /locus_tag="VF788_04260"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8933402.1"
                     /translation="MRGYVVDEEHSMFGQELLVVQRAFFAAPFPQTPDDLYARATQGV
                     VERERQRVVIQPYAQLSTNTFFGRFPASYWQRWTEVTQVEFRVTAEGTGRIEIRASDV
                     AGDARTLATEVVEDAQHEQIGLVARIDKYVDGGALWLEASTGVTELVLESACWSITKR
                     TQTRTTAVVICTYNRADDCLRTLDTLSRDGTALAMVESVYVIDQGSDTVESRAGFADV
                     QHFLGGKLRYIRQANLGGAGGFTRGLFEVLEISQLDSPNIMLMDDDILLEPDTVVRLT
                     TFANCTIDPVIVGGQMLYLLHPDQLHAGAEDTDLPILRAGLPVRDALVHSNLIDNSQE
                     IRVDAGYNAWWACLIPSEIVAKIGYPLPIFFQWDDIEYGLRARAHGYPTVTLPGAGVW
                     HADFHWKDWDDWPRYFSLRNSLIVNALHSQPNRIITARFLLGQLLLYIASMRYGLAAT
                     LIMAVEDFLAGPDILHDGGVEALAAVRKLRAEYGETTRHPANGIPGIASTAIPITGAA
                     PNPSKPTLVLAKRLIWQLLRKPQRSAAVSARDSHWWHVSLFQTAVVTEPSQEGVRIRR
                     LDQDLARKLGVHGVRVLVRFVCKQPQVRRQYRAAMPRLTSRPNWKRLFTSQ"
     gene            complement(3769..4674)
                     /locus_tag="VF788_04265"
     CDS             complement(3769..4674)
                     /locus_tag="VF788_04265"
                     /inference="COORDINATES: protein motif:HMM:NF023007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX8933403.1"
                     /translation="MSQIAVPTAVPARVVDTRCEHPLVTSVATVDRAVKLLSFRVLDV
                     SGAQWPRAPWMGCEHALSDPDFFPRWRRVVAQRFVEQYAHASQQAFVPERATAGYVLQ
                     RYLVIPSYLGGSLFHSARRVPSLMPRQLGFRLDGAALHGIVLRPGRFWCLPDDPDAGH
                     PDAMPVPDEAALGTVLRQQVIAHATRFLAVYNPQVRLGRRTQWAAVTDMLDKALLLAG
                     CSFGSPQAGASDARLVLAGGERPLTSTSTICQVTDDRGRTHWIRRRGSCCFRYALPGT
                     EHPCASCPRVNDADRARTLATLNSN"
     gene            5250..5405
                     /locus_tag="VF788_04270"
     CDS             5250..5405
                     /locus_tag="VF788_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933404.1"
                     /translation="MSRAGHHESDLLELYRTDDPRGGAAAWALLAVGMALVSGILLAV
                     AWAAGAW"
     gene            5606..7090
                     /locus_tag="VF788_04275"
     CDS             5606..7090
                     /locus_tag="VF788_04275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933405.1"
                     /translation="MHEPVVDVAFTTCTQRQQLRWVGVCAMVGAVGGAAVFLGAHRAL
                     IDDSYITLDYARTLAQHGQWALEPGHQANTATSPLNVLLLAALIVITGSPVVSVGILL
                     IITLAATGATLSVICVRLGRSPWLAAMAVCLLVVNPLLISTIGLETYLGIALIAAVGA
                     AVLARRPLAVGAVCGLLVLTRADLAAFALAALIVVVARSPAGTRLKHFAQVTGIAGVV
                     ALPWFAASWWWLGSAIPDTLLFKVSETWEGNSFAVGLWYYELGYPVAVALSVLPAAVG
                     LISLAAWSAAGVRRRGGTAGVLVAVWGLGAILHTTVYLLLQPPPYHWYYGPAIGAFTM
                     IGVLTMGELPPRLQWTASAVGTLMTAATVVFLATRPWVVMPVSSNWASAAEYAALAAR
                     VPSGTTVETFGEVGTVAYFCDCTVVDRLSDRAQVADLLRTKRAEAGPVVRTLLDWNYY
                     RFRTGPPIHAMYRFAFAEDPTGISVTSWRPYVGKMVVQRANTVG"
     gene            7124..7972
                     /locus_tag="VF788_04280"
     CDS             7124..7972
                     /locus_tag="VF788_04280"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8933406.1"
                     /translation="MAIGRKRIRAAVRARLVRVVDEVVTAHRRELEVAFTTYRRELEA
                     TLAAHRDAVQAAFTAEVERAIRAVHDAEFRSRRDVLAAGERAAAASSERFAREVMPTA
                     PTFDHPIATLEHALSLAPAEGMALEFGVATGRTLTVIAAARGNKQVFGFDSFQGLPED
                     WRTNIPAGTFKTDTLPDVPGTELVVGLFQDTLPDFLATHTEPVAFVHLDADLYSSTTT
                     VLQHIGPRLRPGSVIVFDEYFNYPGWQQHEHRAWQEFVAASAIEFRYLAYTCNDEQVA
                     VIIIKT"
BASE COUNT         1441 a         2490 c         2626 g         1552 t
ORIGIN      
        1 ggttggtgcg ggtttcgggt ggtgggcgat ggttgggttg aagaaggtgc cggtgaggtg
       61 gttgtcggcg ttgtagatgc ttgaggggga gatctggccc tggtagtgcc gcaggccgaa
      121 cctaccgcgc tggccactgg cgctatccgg ttgaagctgg agggttcgga cgctgctggc
      181 ctgcagagaa ctagatccgg cgggcgccgc gttgcgttgg cacccgcgag ggatcagaca
      241 agctgacgat ggcttgggcg gcaccgactg gtccgatgcc gcgccggtca gtcagaccgg
      301 gaacgaggtc atcgacgatt gcctgtagtt gcgtggtatt ggcattcagc tcacggccgg
      361 ccgcggatac ggccagggcg agtcgtcgga tctcggcgtg ccgcacggag tgttcgcggg
      421 tggcatcgcc cggttgccgg cgtctgatca agccggcaag ggtgatctcg gtgagcgtcc
      481 cgcgagcgat cttgcggtcg gtgtcatccc cactcagcag cagcgcccgc agccgattgc
      541 tctgcgcggt gatggtgatc gtcatatcct gacgtgcgct gagcaagatc cgcagggcgg
      601 cacggtcgct gtcggtgccg gtgggcagtc gatcggtatc gaggtgcgcg gcggtccggt
      661 cgccagaagg tacatcgatg gggtcggggt ggtgtttgtg gtggggttca tcgcgctcga
      721 tcaccatcag gccgacggcc gcgaccgcgc gggcgacgcc ggcggcgtag ctgctggtct
      781 gctcacctga tacggccaat cgaggaccgg gggcgtgggt gatgatccag gtgagcaggt
      841 cggtatagct ggcgttgtta ctactgatcg aggccgtggc gatgggtgtc ccggtcggtg
      901 aggagatgtg cacctcatgg gtgccgtggt gagtgttcac tcccacgatg gcatcgacgg
      961 tttcaaccaa caaaggcact gccatggtgt ccttccctag cggccggtca acctcgggac
     1021 caaggaggac tcgaaggcgc atccgtgacc gccgcacgca gcgacggaca ggtccctagc
     1081 tccaatacct cgcgatgctc ctccgctagg aaaccgctgc aacctgagag gcgcctgatg
     1141 cgcagctgtg agcctcctaa tgagtctccc ccataaggtg caaaccgttc ccgacagcat
     1201 tgaccatcag ccactgtagt catcagggaa tgagcaagcc cgtgaggacc ccgcgaagcg
     1261 gcagtgtcgc gttgatgctc ctcacccccc ggtacccggg cagtcaccgg attccggcat
     1321 agcgcaccag ttattcccag acattgacac tgaacaaacc ctggatgcgt atactcgcaa
     1381 attaagtcaa cagttgagtt agcaatagat gcataatcag ttaactgcgt atattcactt
     1441 gagccgttac gagtacttta tcgccggtat tgctcgttcc tgacgcaggg tacggaattg
     1501 atcatatacc cagcggaagc atccgactac cggacggagt ggttactgca tgcgcgggta
     1561 cgtcgtcgat gaagaacaca gtatgtttgg ccaggaactg ctagttgtgc agcgtgcgtt
     1621 cttcgctgcc ccgttcccgc agacacccga cgatctttac gcgcgggcca ctcagggcgt
     1681 ggtggaacgg gaacgccagc gagtcgtcat ccagccttac gcccaactat cgaccaatac
     1741 tttcttcgga cgtttcccag ccagttattg gcagcggtgg accgaggtca cgcaggtgga
     1801 gttcagggtc accgccgagg gcaccggccg tatcgagatt cgggcgtcgg acgtcgccgg
     1861 agatgcccgc accttggcga ccgaggtggt cgaggatgcc cagcacgagc agatcgggct
     1921 ggtggcgcga atcgacaagt acgtcgacgg cggggcgttg tggttggagg cgtccacggg
     1981 cgtgaccgaa ctcgtactcg agtctgcttg ctggtcgatc accaaacgta cgcagacccg
     2041 cacgaccgca gtggtgatct gcacctataa ccgagccgac gactgcctac gcaccctcga
     2101 cacgctgtct cgcgacggca ccgcgctggc catggtggag agcgtgtacg tcatcgacca
     2161 gggaagcgat accgtcgaat cccgggccgg cttcgctgac gtgcagcact ttcttggcgg
     2221 aaaattacgt tatatccggc aagcaaattt ggggggtgcg ggtggcttca cccgcgggct
     2281 cttcgaggtt ctggaaatca gtcagctcga cagtccgaac attatgctca tggatgacga
     2341 tatcctgctc gaacccgaca cggtggtccg cctcacgacc ttcgccaact gcacgatcga
     2401 ccccgtgatc gtcggtggcc agatgctcta cctgctacat cccgaccagt tgcacgcggg
     2461 ggcagaagac accgatctgc caatcctgcg cgccgggctg cctgtccggg atgcgctcgt
     2521 ccactcaaat ttgattgata atagtcagga aattcgggtg gatgcgggat acaacgcctg
     2581 gtgggcctgt ctcatccctt ccgaaatcgt cgctaaaatc ggctaccctc tgccgatatt
     2641 cttccagtgg gatgatatcg agtacgggtt gagggcgcga gcccatggtt atccgaccgt
     2701 cacattgcct ggcgctgggg tctggcacgc ggacttccac tggaaagact gggacgactg
     2761 gccccgctac ttcagcctac gcaactcgtt gatcgtcaat gcactgcaca gtcagcccaa
     2821 caggatcatc acggcacgat tcttgctggg ccaactgctg ctgtacatcg catcaatgcg
     2881 ctacggtctg gcagccacgc tgatcatggc agtggaggac tttctcgctg ggcctgacat
     2941 actgcacgac ggcggcgtcg aagcgctggc cgccgtgcgc aagctccgag cggagtacgg
     3001 ggaaacgacc cgacatcctg ccaatggaat ccccggtatc gcctcgacgg cgataccgat
     3061 caccggtgcc gcgcccaacc cctcgaaacc cacgcttgta ctggccaaac ggttgatctg
     3121 gcaactcttg cggaagcccc agcgcagcgc tgcggtcagt gcccgtgact cacactggtg
     3181 gcacgtatcc ctattccaga ctgccgtggt taccgaaccc tcgcaagagg gggtccggat
     3241 ccgcaggctc gatcaggatt tggcgcgaaa gctaggcgtc cacggagtgc gggtgttggt
     3301 gcgcttcgtg tgtaaacagc ctcaggtgcg gcgccagtac cgagctgcca tgccgaggtt
     3361 gaccagcagg cctaactgga aacgactttt caccagccag tgacatggtt cttcgcgtgg
     3421 cgagaatgaa gctcagtgac ggcagaatcg atcgcaccag gcgtgcggcg aggatccggc
     3481 atcacccgcc cgtcacgctc acctagcttg caggtcctgg cgccgggcat cggaaagttc
     3541 ttatcgccga caaccgggcc gctgacaacc gggactgaag gatcgggaga cgctacggaa
     3601 gcggcagctg tccctcggtg gatgtcggag cgggcgaggc tagcacggac cactccggtg
     3661 ttcaccgagt ggacgatgga cgaccccgga gcacggcagc tgcccgatat cctgaccgct
     3721 ctgtgcgagc gcgggctggt agtcctcagc tgccgaagat acggctgctc agtttgaatt
     3781 gagtgtggcc aaggtgcggg cccggtcggc gtcgttgacc cgcggacagc tggcgcaggg
     3841 atgttcggtt ccgggcaggg cgtagcgaaa gcagcacgag ccgcgtcggc ggatccagtg
     3901 cgtgcgccca cgatcgtcgg ttacctggca gatcgtcgag gtcgacgtga gcggtctttc
     3961 gccgccagcg agtaccagtc gcgcatccga ggcgccggct tgcggggacc cgaacgaaca
     4021 ccccgccaac aacagggcct tgtcaagcat gtcggtcact gctgcccact gagtgcggcg
     4081 tcctaagcgc acctgcgggt tgtagaccgc gaggaagcgg gttgcgtgcg cgatcacctg
     4141 ttggcgcaag accgtaccca acgccgcctc atcgggaacc ggcatggcgt cggggtgccc
     4201 agcgtcggga tcatcaggca agcaccagaa ccgacctggg cgcagcacta tcccgtgcag
     4261 cgccgcccca tcgaggcgga agcccagctg tcgcggcatc agcgagggca cccggcgagc
     4321 agagtggaac agcgacccac ccagataact ggggattacc aaataccgtt gcaacacata
     4381 ccctgccgtg gccctctccg gcacgaaagc ctgctgggag gcgtgggcgt actgctcgac
     4441 gaaccgttgc gcgaccactc gccgccaccg tgggaagaag tccggatcgg acagggcgtg
     4501 ctcacacccc atccacgggg cacggggcca ctgggcaccg gagacatcca gcacccggaa
     4561 ggacagcaac ttcaccgccc gatccaccgt cgccaccgac gtgaccagtg ggtgctcgca
     4621 gcgcgtgtcg accactcttg ccggcaccgc agtcggtacc gcgatctgtg acacaacccc
     4681 tccagctagt taggttaggc taacttaacg ccgccaagct agcagtcgtg tcaacgtctc
     4741 cgtggttgcc gacccgaggc atcagctttc ggcaaccttc accgaacccg ccctcgcaat
     4801 ctgagactga gcaccgcagc gcccgaaccg accacgagga atcacactgg atacgcagca
     4861 gtgttgactg gggacgagcc gcctcggcaa gagttctgcg ccgtacggcg ttgggtaatc
     4921 gaccggtggg agggggactc ggtcggtcga cctgggtcct cctaacggtg agtgcgttgc
     4981 tcggcaatcg gggtagtgcg cgggccgttc ggagtaatcc gtgggcgctc gtcgcgcagg
     5041 acggtccggt ggacgaccac tatgcggtaa cgccctcagg ttgagctggt taggtgcctc
     5101 ttcctcccta cggttctcga gatgcgactg cagccggaaa cgaacgctct gggcaacagc
     5161 ctgcccatgg ccgagtcacc tgctccggcg tggcctgcgt cggcggctat caggtcattg
     5221 ggacgccgca acctagcccg aggaaagtga tgagcagagc ggggcaccac gagtccgact
     5281 tgctggagct gtatcgcacg gacgatcctc ggggcggcgc tgctgcctgg gcactgctgg
     5341 cggtgggtat ggctctggtc tcgggtatct tgcttgcagt ggcgtgggca gctggtgcct
     5401 ggtaggacat tgtcggctgg cggcccgacg acaccgggtg gcacgccttc tggccatgtg
     5461 acgtcacgag gcgtacgcca attcgttggc tagtgtgcgg atcgatcaga cccggaccgg
     5521 gacgacgaca accgtcctcg agcacgcaat cctgtcggca agtctccggc cggcgcgact
     5581 aaacccgggg agaaggatgc aggctgtgca cgaaccggtg gttgacgtgg cgttcacgac
     5641 ttgtacgcag cggcagcagc ttcgctgggt gggagtctgc gcgatggtcg gtgcggtagg
     5701 tggcgcagcc gtgttcttgg gcgcgcatcg cgctttgatc gatgactcct acatcacgct
     5761 cgactacgcg cgcacgctcg cccagcacgg acaatgggcg ctggagccgg gacatcaggc
     5821 gaacacagcg acatcaccgc tcaacgtgtt gttgctggca gcactcatcg tgattaccgg
     5881 ctccccggtg gtctcagtgg ggatactgct catcatcacc ctcgccgcga ccggtgccac
     5941 cttatcggtg atctgcgtgc gattggggcg cagcccgtgg ctcgccgcga tggcggtctg
     6001 tctcctggtg gtgaacccgc ttctcatctc cacgatcggc ctggagacct acctcgggat
     6061 cgcgttgatc gctgctgtgg gcgctgccgt gctcgctcgg cgtcctcttg ccgtcggcgc
     6121 ggtatgcggg ctactggtgc tcactcgcgc tgatctcgct gcattcgccc tcgccgcgct
     6181 catcgtcgtg gtcgcacgct cacctgcagg cactcggttg aagcatttcg cacaagtcac
     6241 cggcatcgcc ggtgttgtcg ccttgccgtg gtttgcggcg tcgtggtggt ggcttggttc
     6301 agcgattccg gacactctcc tgttcaaggt cagcgagaca tgggaaggta attcattcgc
     6361 tgttggcctg tggtattacg agcttggcta tcctgttgcc gtcgcattat cggtgctgcc
     6421 tgccgccgtc ggtcttatct ccctggccgc gtggagcgcc gctggggtgc gccgccgggg
     6481 cgggacggct ggtgtgctgg tcgcggtgtg ggggctgggc gcgatcctgc acaccacggt
     6541 ttacctgctg ctgcagcctc cgccgtatca ctggtattac ggtccggcga tcggggcatt
     6601 caccatgatc ggggttctca ctatgggaga gctgcccccc cggctgcaat ggaccgcatc
     6661 agcagtgggc accctcatga ccgcagcgac cgtggtattt ctcgccacgc ggccatgggt
     6721 agtcatgccc gtctcgagca actgggcttc agccgctgag tacgcagctc tcgccgcaag
     6781 agtaccctct ggtaccaccg tggagacatt cggtgaggtc ggcacggtcg catacttttg
     6841 tgactgtacc gtcgtagatc ggttgtcgga tcgtgctcag gtcgctgatc tgctacgaac
     6901 taaacgagct gaggccggcc ctgtggtgcg aaccctgctc gactggaatt attatcggtt
     6961 cagaacgggt ccccccattc acgctatgta cagattcgcg tttgctgaag atcctactgg
     7021 gatttcagtg acgtcgtggc gtccctacgt tggcaagatg gttgtccaac gcgccaacac
     7081 tgtcggctaa actgcaccgc tgggggctga ggacaggaag ggattggcca tagggcgcaa
     7141 acgtatccgc gcagcggtgc gagcccggct cgtgcgcgtg gttgatgagg tcgtcaccgc
     7201 gcaccgccgc gaattggagg tggcattcac cacctatcgg cgtgagcttg aggccacact
     7261 cgccgcgcac cgcgatgcgg ttcaggctgc cttcactgcg gaggtcgagc gcgctatccg
     7321 cgccgtgcac gatgcggagt tccggtcccg gcgcgacgtg ttggcggcag gcgagcgcgc
     7381 ggccgccgcc tccagcgaac gcttcgcgcg ggaggtgatg ccgacagcac ccaccttcga
     7441 tcacccaatc gcgacactgg agcatgccct gtcgctcgcg cccgccgagg ggatggccct
     7501 ggaattcggc gttgccaccg gccgtaccct cacggtgatt gccgccgcgc gggggaataa
     7561 gcaggtcttc ggtttcgact cgtttcaagg cctgcccgag gattggcgca cgaacatacc
     7621 agcgggcacg ttcaagactg acacgctacc cgacgttccc ggtaccgaac tggtcgtcgg
     7681 attgttccag gacaccctgc ccgatttcct cgccactcac actgaacctg tggcgttcgt
     7741 acatcttgat gcggacctct attcgtcgac gacgaccgtt ctccagcaca tcggtcctcg
     7801 actacggccg ggcagcgtga tcgtgttcga cgagtacttc aattatcccg ggtggcaaca
     7861 gcacgaacat cgcgcctggc aggagttcgt ggcggcctct gccatcgaat tccggtacct
     7921 ggcctacacg tgcaatgacg agcaggttgc ggtcatcatc atcaagacct gaattcagtc
     7981 ggtggacgca tgtacgctgc ctggccccgg accggggcga tgacaaccgt cctcgaacac
     8041 gcgatcccag gactgcaccg aggtgagggt ggggaccgcg gcgcggtaac gctccgctgt
     8101 gacgctcca
//
LOCUS       DASVXZ010000219         2323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_382621, whole genome shotgun sequence.
ACCESSION   DASVXZ010000219 DASVXZ010000000
VERSION     DASVXZ010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382621"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..573
                     /locus_tag="VF788_04285"
     CDS             274..573
                     /locus_tag="VF788_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8933407.1"
                     /translation="MDEVDISWPAAWRGENQINLSSLDELDQPDWQERALCAQTDPEA
                     FFPEKGGSTREAKRICAGCEVRAECLEYALAFDERFGIWGGLSERERRRLKRGVI"
     gene            853..>2323
                     /locus_tag="VF788_04290"
     CDS             853..>2323
                     /locus_tag="VF788_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933408.1"
                     /translation="MPRHSQLPSVTDGSDSRLLALDDAGIGTRIRQLLLSPPALLTAV
                     MTVLAVLVNRHRLALDLAGGRLLPLESLSQTWSSYLASWHPVGGGSAAPPPAALAVLG
                     LLGLPVGSPGVAVSLLVLFALPLAALSAYWATRAAPVSRKRRAFAAAGYALLPPAIAG
                     LAQGRLDVLVAYLLLPLVLAGAASVLRGGTGRRSGGWLSTAAATALGVAVIGAFAPLL
                     HLLVLAVMLIGFVVLPAPRVSTVRRTLGLFAVVLLPLGLLMPWPAVVIQRPTVLMHGV
                     GAVVAEPLPSWLRLLALDPGGVGALPWAGAVVVLAAAVALVIRPSRAMLPGLGLVLLG
                     AAAAALLIRLPMRPLSGGDPRPGFTGGALLFVGCGLLWIVLLAVGRAEPTWWSQRSGA
                     RWAKALSTMPWVGLAMLSTGAVVAGAGGTLAAGSTAGVPVLAPSLAAELARADTSVLV
                     VGSTGEPVRLTRSRTARFGDDDIAPLRATGARLERIAAAL"
BASE COUNT          291 a          734 c          849 g          449 t
ORIGIN      
        1 aaccgggagt cacgggcctg ggctcctggc cagggacacg caccacgcca ctctcgctca
       61 tcggccgccc accgtctcta ccgggtatgc gcgcagcaga tcacgattgc acggcgtgtc
      121 aacggagaca cgctgcgcga ccggtcggca ggggtctgag aacttgcatc cccgatgtca
      181 ggggtgtaat cacaaccttg ttattctccg gtcccacagc ccgggggagg cgcaaaccgg
      241 ggaggaactc tatggcgagg agggtggacc gccatggatg aggtggatat cagctggccc
      301 gcggcctgga ggggtgaaaa ccagatcaac ttgagttcat tggacgagct tgatcagccg
      361 gattggcagg aacgggcact gtgtgcccag accgacccgg aagcgttctt ccctgagaag
      421 ggcggatcga ccagggaagc gaagcggatt tgcgcaggct gtgaggtccg agccgagtgt
      481 ctggagtatg cgttggcatt tgacgagcgg ttcgggatct ggggtgggct atccgaacgg
      541 gagcgtcgcc ggctcaaacg cggtgtgatc tgaggtcggt gggctgtccc ggtggcttcc
      601 tataccgcag tctgactagg ccgcccgggg acgttaccgt gtgcccccac caacggggat
      661 ggacagggag gaatgagcgt gtcgcgcagt gctcggagcc ctgccggtga tggcaatgcc
      721 cgtcctctgg ggggtccgcg cagttccggc accgtcgcgg caccagcagg gcccaatcgt
      781 ccagcagacg atgtctcatc ccccgacgtc cagcaggagt ccggtacgcg tgtccggcct
      841 cggccgtctc cgttgcccag gcactctcag ttaccgagcg ttaccgacgg tagcgactcc
      901 cgcctgcttg cgctagacga tgccggaatc ggcacccgga tccggcagct tctgctgtcc
      961 ccgcccgcat tgctgaccgc agtgatgact gtgctcgccg tgttggtgaa ccgccaccgg
     1021 ctggcgttgg acctggccgg cggccggctg ctcccgctgg agagcctgag ccagacatgg
     1081 tcgtcctatc tggcttcgtg gcatccggtg ggcggcggga gtgcggcccc cccaccagca
     1141 gccctggccg tgctgggtct gctcgggttg ccggtgggtt cgccgggtgt cgcggtatcg
     1201 ctcttggtgc tattcgcgct gccgctggca gccttgtccg cctactgggc cacccgcgcc
     1261 gcaccggtga gccgcaagcg ccgtgccttc gccgccgccg ggtatgcctt gctgccaccg
     1321 gccatcgccg ggctggcgca aggccggctg gatgtgctgg tggcgtactt gctgctgccc
     1381 ctcgtgctgg ccggtgccgc ttcggtactg cgcggtggga caggcaggcg atccggcggc
     1441 tggctgtcca ctgcggctgc tacggcactc ggtgttgctg tcataggagc gtttgccccc
     1501 ctgctgcacc ttctggtgct ggcggtcatg ctgatcggtt ttgtggtcct tcccgcgccc
     1561 cgggtatcga cagtgcgccg cacgctcggt ttgttcgccg tggtgctgct gccgttgggg
     1621 ttgctcatgc cgtggccagc ggttgtgatc caacgtccca ccgtgctgat gcacggggtg
     1681 ggtgcggtag tggctgaacc gctgccgagc tggctgcggc tgcttgcctt ggacccggga
     1741 ggcgtcggcg ccctgccgtg ggccggcgcg gtggtggtgc ttgcggccgc tgtcgcgctc
     1801 gtcatccggc cgtccagggc gatgttgcct ggtctgggat tggtgttgct gggcgccgcc
     1861 gcggcagcgt tgctgatccg gctaccgatg cggccgttgt ccggagggga tccccgcccg
     1921 ggcttcaccg ggggagcgtt gctgttcgtc ggctgcggac tgctgtggat cgtgttgttg
     1981 gcggtcggca gggccgagcc gacttggtgg tctcagcgca gcggtgctcg ctgggccaag
     2041 gctctgtcga ccatgccgtg ggtcgggttg gcgatgctct cgaccggagc ggtggtggcg
     2101 ggcgccggag gcacccttgc cgccggatcg acggcagggg tgccggtgct tgctccctcg
     2161 ctggcagcgg agttggcccg tgccgacacc tctgtactgg tcgtagggag cacgggtgag
     2221 ccggtacggc tgacccggtc gcggacggca cgtttcggtg acgacgacat cgctcccctc
     2281 cgtgccaccg gagctcggct ggagcggata gccgccgctc tgc
//
LOCUS       DASVXZ010000220         2147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1189474, whole genome shotgun sequence.
ACCESSION   DASVXZ010000220 DASVXZ010000000
VERSION     DASVXZ010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1189474"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..256)
                     /locus_tag="VF788_04295"
     CDS             complement(<1..256)
                     /locus_tag="VF788_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005446038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEX8933409.1"
                     /translation="MLNIFARASVSRFVEPVGARLVQAGIGPDTITIIGTVGTVAAAL
                     WLFPLGYLLTGTIVITVFVFLDVLDGAVARARGSGTPWGSV"
     gene            complement(387..863)
                     /locus_tag="VF788_04300"
     CDS             complement(387..863)
                     /locus_tag="VF788_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEX8933410.1"
                     /translation="MAYIKQEGKAGPQAGGGPCPFCRIITMADAEALVIARGATVYAV
                     LNLYPYNPGHLMVVPYRHVADYPDLTIQETTELATFTQQAMLAARRAAAPHGFNIGIN
                     QGSIAGAGIAAHLHQHVVPRWGGDANFMPVVGGTKVLPQLLAETHTLLVEAWKQLS"
     gene            complement(920..>2147)
                     /gene="thrS"
                     /locus_tag="VF788_04305"
     CDS             complement(920..>2147)
                     /gene="thrS"
                     /locus_tag="VF788_04305"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005446047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX8933411.1"
                     /translation="DEIGSGLAVFHPRGGTVRRVMEDYSRRRHEEAGYEFVNSPHITK
                     GQLFETSGHLDWYADGMFPPMHLDAELAPDGTVRKPGQDYYLKPMNCPFHNLIYRSRG
                     RSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTPAQLQGEIRSLLSF
                     VLDLLRDFGLDDFYLELSTRDDEKYVGSDEQWQEATDALRQAAEASGLALVLDPGGAA
                     FYAPKISVQVKDALGRTWQLSTIQVDLQEPELFELEYTAPNGTRQRPYMIHRALFGSI
                     ERFFGILTEHYAGAFPAWLAPVQVVGIPIADEHVEHLQQVAKALRARGIRVEVDASDE
                     RMQKKIRTHTTQKVPFLLLAGSKDVEGGAVSFRFRDGSQINGVAIEDAVSAITGWVAR
                     RENRSPSAAELPIGPS"
BASE COUNT          376 a          723 c          692 g          356 t
ORIGIN      
        1 gcacgcttcc ccaaggcgta ccggacccgc gcgccctggc gactgcccca tcgagcacat
       61 ccagaaagac gaacacagtg ataacgatgg tgcccgtgag caggtagccg agggggaaca
      121 gccacagcgc agccgccact gtcccgactg tgccgatgat cgtgatggtg tcaggcccaa
      181 taccggcctg gaccaggcgg gcacccaccg gctcgacgaa ccgggagacc gacgcacggg
      241 cgaagatgtt gagcatcgcg cggctaccac cgtcgggcgg caggccggac gctgccggcg
      301 agcaccggac cgaacaccgt cagcagacca cctttcgcac cacgagccag gccggcgtca
      361 ctaccagcac accggcaaca gcgatttcag gacagttgtt tccatgcctc taccagcagc
      421 gtatgggtct cggccagcaa ctggggcagc accttggtgc cgcccacgac cggcatgaag
      481 ttcgcgtcgc cgccccaccg gggcaccacg tgctggtgca gatgcgcggc gataccggcc
      541 cccgcgatgg agccctgatt gatcccgatg ttgaagccat gcggcgcggc cgcgcggcgg
      601 gccgcgagca tggcctgctg ggtgaaggtg gccagttcgg tggtctcctg gatggtcagg
      661 tccgggtagt cggcaacgtg ccgatagggc accaccatca ggtggccggg attgtatgga
      721 taaaggttga gcaccgcata gacggtggcg cctcgggcga tcaccagagc ctcagcgtcc
      781 gccatggtga tgatccggca aaatgggcac ggtccaccac cggcctgcgg tccggccttg
      841 ccctcctgct tgatatacgc cattcggtgc ggcgtccaca gtcgttgcca cgcatccggc
      901 gcaccgaccc cgtcctgggt cacgacggtc ctatcggaag ctccgcagcg ctcggcgagc
      961 ggttctcccg ccgggccacc cagccggtga tggcgctgac tgcatcctcg attgctacgc
     1021 cgttgatttg gctgccgtcg cggaaccgga aggacaccgc gccgccctcg acgtccttgc
     1081 tccccgcgag cagcaggaag ggcaccttct gcgtggtatg ggtccggatt ttcttttgca
     1141 tgcgctcgtc tgaggcatct acctcaacgc ggatgccccg cgcccgcagc gccttggcga
     1201 cctgctgcaa gtgctcgacg tgctcgtcgg cgatcgggat cccgaccact tgcaccggtg
     1261 ctagccaggc cgggaacgcg cccgcgtagt gctcggtgag gatgccgaag aatcgttcga
     1321 tcgatccgaa cagcgcccgg tggatcatgt agggacgctg ccgggtgccg ttgggagcag
     1381 tgtactccag ctcgaagagc tccggctcct ggaggtcgac ctggattgtc gacagttgcc
     1441 aggtgcgccc cagcgcatcc ttgacctgca ccgaaatctt gggcgcataa aaggccgcgc
     1501 caccggggtc gagcaccagc gccagcccgc tcgcctcagc cgcctggcgc agcgcgtcgg
     1561 tcgcctcctg ccactgctcg tcactgccga cgtatttctc gtcgtcacgg gtggacagct
     1621 ccaggtagaa gtcgtccagc ccgaagtcac gcagtaggtc cagcacgaaa ctcagcagcg
     1681 agcggatctc gccctgcaac tgcgctggtg tgcagtagat gtgcgcgtcg tcctgggtca
     1741 tcccgcgcac ccgggtcagg ccatggacca cgccagactt ctcgtaccgg tacaccgacc
     1801 cgaattcgaa cagccgcagg ggcagttctc ggtaggaccg tccccgggag cggtagatca
     1861 ggttgtggaa cggacagttc atcggcttga ggtagtagtc ctggccaggc ttgcggaccg
     1921 tgccgtccgg cgccagttcc gcatcgagat gcatcggggg gaacatgcca tcggcgtacc
     1981 agtccagatg cccggatgtc tcgaaaagct gtcccttggt gatatgcggc gagttgacga
     2041 actcatagcc ggcctcctcg tgccggcggc gggagtagtc ctccatcacc cggcgcacgg
     2101 tgccaccgcg cgggtggaac actgcaagcc cggacccaat ctcgtca
//
LOCUS       DASVXZ010000221         1891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_23877, whole genome shotgun sequence.
ACCESSION   DASVXZ010000221 DASVXZ010000000
VERSION     DASVXZ010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23877"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..1600
                     /locus_tag="VF788_04310"
     CDS             257..1600
                     /locus_tag="VF788_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8933412.1"
                     /translation="MLTVVCDESEGPDESAAAAITGPIAGSASLIDEIVREGARRMLA
                     EALQAEVAVYIERLAGELDEGGRRLVVRNGSHRPREVLTSAGAVEVVAPRVNDRRVDP
                     DTGQRCRFSSAILPAWARKTPKVTEVLPLLYLHGLSSSDFGPALGPFLGSDGGLSAPV
                     ITKLTQTWQAEQRAFAQRDLSGVDYVYLWADGIHVNVRLEEHKLCLLVMIGVRADGRK
                     ELVALADGYRESVASWADLLRDCARRGMRAPVLAIGDGALGFWGALREVFPTTREQRC
                     WFHKIANVLGALPKSAHPGAKKALAEIWNAEDRAHALNAVRAFEVSYRAKFPKAVAKI
                     TDDLDELLAFYDYPAEHWIHLRTTNPIESTFGTVRHRTKVTRGPGSRAAGLAMAFKLI
                     QAAQNRWRAVNAPHLVALVRAGATFINGKLVERPDTPTGTDGPTTLETTQADQTA"
BASE COUNT          327 a          617 c          627 g          320 t
ORIGIN      
        1 agattatcct aggaactatt ttgtctgttt aggtcgctct ttgtgaccag gggtttggtc
       61 acccgcatga gcggctttca tgccaggacg gtgactgacc cacagcggcg gtgtggttag
      121 cgaggtcgtt ggcgggagca atgcttgaaa tctgtggatg agcaagatca aggaggggtc
      181 gtaccctccc gatcatcctg aacaggctcc tcaagcaagg gccggcgcgg caacgccggt
      241 cgggaaggta cgaccgatgc tcaccgtagt ctgtgacgag tccgagggtc ctgacgagtc
      301 cgccgcggcc gcgatcaccg gtccgatcgc tgggtcggcg tcgctgatcg atgagattgt
      361 ccgcgagggt gcccggcgga tgctagccga ggcgttgcag gctgaggtcg ccgtctacat
      421 cgagcgcctc gccggggagc tggacgaggg tgggcggcgg ctggtcgtgc gtaacggctc
      481 gcaccggccg cgcgaggtgc tcaccagcgc cggggcggtc gaggtcgtcg ccccgcgggt
      541 caatgaccgc cgggtcgatc cggacaccgg ccaacggtgc cggttctctt cggcgatcct
      601 gccggcgtgg gcgcgcaaga ccccgaaggt caccgaggtg ttgccgctgc tgtatttgca
      661 cgggctgtcg agcagcgact tcggacccgc cctgggaccg ttcctcggtt cggacggggg
      721 attgtccgcg ccggtgatca ccaaactcac ccagacctgg caggccgagc agcgcgcctt
      781 cgcccagcgc gacctctccg gcgtggacta tgtgtacctg tgggccgacg gtatccacgt
      841 caacgtgcgc ctcgaagagc acaagctgtg cctgctggtc atgattggcg tgcgagccga
      901 cggccgcaag gagctcgtcg cgctcgccga tggctaccgc gaatctgtcg cgtcctgggc
      961 cgatctgctg cgcgactgcg cgcgtcgcgg aatgcgcgcc ccggtgctgg cgatcggcga
     1021 cggcgcgttg gggttctggg gcgcgctgcg cgaagtcttc ccgaccacac gcgagcagcg
     1081 ctgctggttc cacaagatcg caaacgtgct cggggcgctg cccaaatccg cccatcccgg
     1141 cgcgaagaag gcgctggcag agatctggaa cgccgaggat cgcgcccacg ccctcaacgc
     1201 cgtccgagcg ttcgaggtca gctaccgcgc gaagttcccc aaggcggtcg cgaagatcac
     1261 cgatgatctc gacgagctgc tggcgttcta cgactacccg gccgagcact ggattcatct
     1321 acgcacgacc aacccgatcg agtctacgtt cgggaccgtc aggcaccgga ccaaggtcac
     1381 caggggtccg ggctcacggg cggccgggct ggcgatggca ttcaagctca tccaggccgc
     1441 ccagaaccgc tggcgcgcgg tcaacgcccc gcacctggtc gccctggtcc gcgccggcgc
     1501 gaccttcatc aacggcaagc tcgtggagcg ccccgacacc cccaccggta cggacggccc
     1561 gaccaccctc gagactaccc aagccgacca gaccgcctaa aagatcttca tccacaggta
     1621 ttgacaattg ctcctcgggc tcgatgggac aggccagaac gacagcgtcg cacgcagacc
     1681 atggcgtggt atcaaacgtg gtgcgaactc aggtccgatg atgctgccaa agtcacctaa
     1741 aggtgtcaga tctgcaactg ttgtcgctgg tagacgccat agtagccatg gtacggcctc
     1801 ctcgtaatga gcaggtccgg ggttcgattc cccgaggtgg ctccacccca gcctgggcgg
     1861 atcttcaacc gggatccgca tcggcgccga a
//
LOCUS       DASVXZ010000222         2474 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1189602, whole genome shotgun sequence.
ACCESSION   DASVXZ010000222 DASVXZ010000000
VERSION     DASVXZ010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1189602"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..385)
                     /locus_tag="VF788_04315"
     CDS             complement(<1..385)
                     /locus_tag="VF788_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEX8933413.1"
                     /translation="MAEQLRMMAVHAHPDDESSKGAATMARYVAEGHDVMVVTCTGGE
                     RGSILNPSFEPADLAEHPAQMTATRQQEMARAAQILGVQHRWLGYIDSGLPEGDPPPP
                     LPEGCFAVVPLEGPTRDLVRVIREFR"
     gene            549..977
                     /locus_tag="VF788_04320"
     CDS             549..977
                     /locus_tag="VF788_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4307 domain-containing protein"
                     /protein_id="HEX8933414.1"
                     /translation="MTAGQLPEGRYGRRASRRSGWAIPAGLVFAALLGLAVAVIGYRN
                     LGTTPIQGQAVSFTLLPGNAVQLRLSVVRDDPSHAAVCIVRARSRDGEETGRREVYVP
                     PAAGPIVLSTVVQTSRSPVTADVYGCSLDVPAYLVPGPHY"
     gene            1187..1675
                     /gene="greA"
                     /locus_tag="VF788_04325"
     CDS             1187..1675
                     /gene="greA"
                     /locus_tag="VF788_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEX8933415.1"
                     /translation="MSETQVTWLTQEAYDRLKHELDELVANRPVIAAKINDAREEGDL
                     KENGGYHAAREEQAQLEARIRQLQELLRVAKVGNVPSQSGIAAPGMVVTVRFQDDDET
                     ETFLLGSLEEIAHGDLEVYSPNSPLGKAIIGAHEGEDRHYELPNGGLMTVAVVKAEPF
                     RG"
     gene            complement(1687..>2474)
                     /locus_tag="VF788_04330"
     CDS             complement(1687..>2474)
                     /locus_tag="VF788_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX8933416.1"
                     /translation="GAVFIHPFDHPDVLAGQGTVGLEVLEQLPDVGTILVPTGGGGLV
                     GGVAAAVKGVKPEVRVIGVQAETAAVWPASLAAGSPVRLHRRHTMADGIAVSEVGPVT
                     FAHVSALVDEVITVREEALSQALLLCLERTKMLVEPAGAAAVAALLEPVPRLPGPICA
                     VLSGGNVDPLLLMHVIRYGLGVDGRFLALRVTVPDRPGELARLLARVGASGANVVDVA
                     HSRIADQLAVGDAVVALSLEMRGPKHCAALITDLDAAGYQVAQ"
BASE COUNT          431 a          858 c          801 g          384 t
ORIGIN      
        1 gccggaactc gcggatcacc cgaaccaggt cccgggtggg accctccagt gggaccaccg
       61 cgaagcatcc ttccggcaac ggcggcggcg ggtcgccctc cggcagcccg gagtcgatgt
      121 agcccaacca acgatgctgc acacccagga tctgtgcggc gcgggccatc tcctgctgcc
      181 gcgtcgcggt catctgcgcg gggtgctccg ccaggtcggc cggctcgaag gaggggttca
      241 agatgctgcc gcgttccccg ccggtacaag tcaccaccat cacgtcgtga ccctcggcga
      301 cgtatcgagc catcgtcgcc gcgcccttgc tcgactcgtc atcgggatgt gcgtgcaccg
      361 ccatcattcg cagctgctca gccatggatg cctgctcatc ccttctccac gccggtgtcc
      421 cgacgatgga atgctccgtt agtggaccat tgttcccgga gggaccgaca gcgacctgaa
      481 gtgggaaccc caagtggccg atcgagtggc tgccttccgg tatgtggccg tccaggaggt
      541 gcaacgccgt gactgcgggc cagcttcccg aaggccgcta cggacggcgt gccagccggc
      601 gctccggatg ggccatcccg gccgggctgg tcttcgcggc gctgctcggg ctggccgtcg
      661 cggtgatcgg ctaccgcaac ctgggcacca cgccgataca gggccaagcg gtgagcttca
      721 ccctactgcc gggcaatgcc gtgcaactac gcctcagcgt ggtccgcgac gacccgtcgc
      781 atgcggcggt atgtatcgtc cgggcgcgct cgcgtgatgg cgaggagacc gggcgtaggg
      841 aggtctacgt gccaccggcg gctgggccga tcgtgctatc caccgtggtg cagacgtccc
      901 ggtcaccggt gaccgccgat gtctacggat gttcgctcga cgttcctgcc tacctagttc
      961 cggggcccca ttactgactt ctataaccca gctgagcagg cacgatccgg agcgcgtcac
     1021 ccataaggct gaggccgaac cggacacatc gtgttaccgt ggaggacgcg cacggccccg
     1081 gggcagggcc gtgtttttcc gttccggccg ctggctgtgc tgccagcggc tcggatcggt
     1141 ccgcccccgc ggtagcggac gtcggatctg aggaggagtg atgaccgtga gcgaaactca
     1201 ggtgacctgg ttgacccagg aagcctacga ccggcttaag catgaactcg acgagctggt
     1261 cgcgaaccgc ccagtcattg ccgcaaagat caacgacgcc cgcgaggaag gcgacctcaa
     1321 ggagaacggt ggctaccacg ccgcccgcga agagcaggcc caactcgagg cgcggatccg
     1381 ccagctgcag gaactgttaa gagttgccaa ggtcggcaac gtcccctcgc agtccgggat
     1441 tgctgcgccc gggatggtcg tcacggtgcg gtttcaggat gacgacgaga ccgagacatt
     1501 cctgctgggc tcgctggaag aaatcgcaca tggtgatctc gaggtctact cgccgaactc
     1561 gccattgggc aaggcaatca tcggggcgca tgagggcgag gatcgtcatt acgagttgcc
     1621 gaatggcggt ttgatgaccg tcgccgtcgt caaggctgaa cctttcaggg gctgaactcc
     1681 atcgcctcac tgcgcgacct ggtagcccgc ggcatccagg tcggtgatca gagctgcgca
     1741 gtgtttcgga ccgcgcatct ccaagctcaa cgcgaccacc gcatcgccga ccgccagttg
     1801 gtcagcgatg cgggaatgcg ccacatcaac cacgttggcg cccgacgcgc cgacccgcgc
     1861 caacagcctg gccagctcgc cgggccgatc aggcacagtc acgcgcaacg ccaggaaccg
     1921 accgtcgacg cccagtccgt agcggatgac atgcatcagc agtagcgggt cgacattgcc
     1981 gccggacagc acggcgcaga ttggcccggg caaccgcggt accggctcca gcagcgccgc
     2041 caccgcagcc gcgccagccg gctcgacgag catcttggtc cgctccagac acaacagcag
     2101 cgcctgggac aacgcctcct cccgcaccgt gatcacctcg tcaaccagcg cggacacatg
     2161 cgcgaaggtc accggcccga cctcggagac ggcgatcccg tcggccatcg tgtgccgccg
     2221 gtgtagccga accggcgatc cggcggccag cgacgccggc cacacggcag cggtctcggc
     2281 ctgcacaccg atcactcgga cttcaggctt gacgcccttg accgcggcag cgaccccacc
     2341 gacgagtcca ccgcccccgg tgggcaccag gatggtcccg acgtcgggca gttgctccag
     2401 tacctccagg cctaccgtgc cctggccggc cagcacgtcg ggatggtcga aggggtggat
     2461 gaacactgcc ccgg
//
LOCUS       DASVXZ010000223         2048 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1087770, whole genome shotgun sequence.
ACCESSION   DASVXZ010000223 DASVXZ010000000
VERSION     DASVXZ010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1087770"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VF788_04335"
     CDS             complement(<1..854)
                     /locus_tag="VF788_04335"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEX8933417.1"
                     /translation="MSGARMMRRRLSHLGAVTAIVFAGLLTGCSTAAPVDNDPIGSTG
                     RTKIAVVAAENFWGSIAAQLGGERVTVQSIVASPNADPHDYEPTAADGRALATAQYVI
                     VNGAGYDPWAAKLVDANPAPGRSVLTVGELVGVKNGGNPHRWYSPDDVHRVIEQITTD
                     YKRVNPADAAYFDQQKQAYETQGLARYHQLIADIKSKYGGAPIGASESIVTPLAEGLG
                     LTMATPESFLDAVSEGTDPTVADKGTVDQQIRTKKIKILVFNRQNSTPDVAALVSEAK
                     TQGIQVATV"
     gene            complement(1214..>2048)
                     /gene="egtD"
                     /locus_tag="VF788_04340"
     CDS             complement(1214..>2048)
                     /gene="egtD"
                     /locus_tag="VF788_04340"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HEX8933418.1"
                     /translation="EQITMLPEYYPTRTERELLRRTVAEIAALAAADTLIELGSGSSE
                     KTRLLLDALTAKSTLRRFVPLDVSESALRGAMAAVAQEYPGLAVHGVVGDFTQHLELL
                     PTAERGRRLVAFLGGTIGNLVPDERAGFFTALHAALDPGELLLLGAGLITDPAVMVPA
                     YDDAAGVTAEFNLNGLHVLNRELGADFDVTAFDHVAAWDPAHEWIEMRLRARHAMTVR
                     LPGAGMTVHFAEGEEMRTEVSAKFRHEGLGAELVHTGFVDQMWWTDADDRFALVLAAA
                     A"
BASE COUNT          370 a          697 c          621 g          360 t
ORIGIN      
        1 acggtcgcca cctggatgcc ctgcgtcttt gcctcgctca ccagagccgc cacgtccgga
       61 gtggagttct ggcggttgaa caccaggatt ttgatcttct tggtcctgat ctgctggtcc
      121 actgtgccct tgtcagcgac agtcggatcg gtgccttcgc tgaccgcgtc caggaacgac
      181 tccggcgttg ccatcgtcaa gccgagacct tcggccagcg gggtcacgat ggattccgaa
      241 gcgccgatcg gcgcgccgcc atacttactc ttgatgtcgg cgatgagttg gtggtaacgg
      301 gccaacccct gagtctcgta ggcctgcttc tgttgatcga aatatgcggc atcggctggg
      361 ttgacgcgct tgtagtcggt agtgatctgc tcgatcaccc ggtgcacatc atccggggag
      421 taccagcgat gtgggttgcc gccattcttg acccccacca actcccctac tgtcagcacc
      481 gaccgtcccg gcgccggatt tgcatcgacc agcttggcag cccaggggtc ataacccgcg
      541 ccgttcacga tcacatactg cgcggttgcc agagcccgcc cgtcggccgc agtcggctca
      601 tagtcatgcg ggtcggcgtt cgggctggcg acgatgctct gcacggtgac gcgctcgcca
      661 cctagctgcg cggcaatgct cccccagaag ttctccgccg ccacgaccgc gatcttcgtt
      721 ctgccggtcg acccgatcgg gtcgttatct accggtgccg cggtcgaaca acccgttagg
      781 aggccggcga acacaatggc cgtcaccgcg ccaaggtgtg acaaccggcg acgcatcatt
      841 cgagctccgc tcacgttgcg tctcctagtt cggacgatgg gtaacccaca agactgttaa
      901 cgacacccga aagcgtaaac gaaatcgata atcattccaa gtgaaggaga gaggttcacg
      961 gcgcgtccag cccgaccagg agccagttac ctgagccgga ttcgggggat gagcacagcc
     1021 gctggtcggc ccagctatag cgatgctgcc ccaccgcgga gcggcccggg ctcaacagcc
     1081 cggcggcttg ttcctgggca acagtctcga cgacgaccgc atcgaggacc caagatgatc
     1141 aaacacctga ccccgcgcca cggttcagca gctcgactac gcgtctcacc aatgttgatt
     1201 tgcaactgcc tggtcaagcc gcggcagcga gcactaacgc aaaccggtcg tcggcatcgg
     1261 tccaccacat ctggtcgacg aatccggtgt gcaccagctc ggctccgagc ccttcatgcc
     1321 ggaatttggc cgacacctcg gtgcgcatct cctcgccctc ggcgaagtgc accgtcatgc
     1381 ccgcccccgg caggcgcacg gtcattgcat ggcgggcccg cagccgcatc tcgatccact
     1441 cgtgcgccgg gtcccacgcc gcgacgtgat cgaaggcagt gacgtcgaag tcagcgccga
     1501 gctcacggtt gaggacgtgc aacccattga ggttgaactc agcagtcact ccggcggcgt
     1561 cgtcgtaggc cggaaccatc acggccgggt cggtaatcaa cccggctccc agcagcagca
     1621 gttcaccggg atccagtgca gcgtgcaggg ccgtgaagaa gccagcccgc tcgtcgggca
     1681 ccagattgcc gatcgtgccg cccaagaacg cgaccagccg ccgcccgcgc tcagcggtcg
     1741 gcagcagctc aaggtgctgg gtgaagtcgc cgaccacacc gtgcaccgcg agccctgggt
     1801 actcttgagc caccgccgcc atcgcgccac gcaacgcgga ctccgacacg tctagcggca
     1861 cgaagcgccg cagggtgctc ttcgcggtca gggcgtcgag cagcaaccgc gttttctctg
     1921 acgagccgga cccgagctcg atgagggtat cggcagccgc gagtgcagcg atctcagcca
     1981 ccgtgcgccg cagcaactcg cgctcggtgc gggtggggta atactccggc agcatggtga
     2041 tctgctcg
//
LOCUS       DASVXZ010000224         2602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1189711, whole genome shotgun sequence.
ACCESSION   DASVXZ010000224 DASVXZ010000000
VERSION     DASVXZ010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1189711"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VF788_04345"
     CDS             <1..355
                     /locus_tag="VF788_04345"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5753 domain-containing protein"
                     /protein_id="HEX8933419.1"
                     /translation="VVINEGALRRVVGGREVMRAQLTRLIEATELPNVALRVLPFAAG
                     AHPGVDGSFTVLEFSDPSNPRIVYLDRMTDSEYLDGLRDVAAYRHAHERLQASALSVS
                     DSREMINSLLRELRR"
     gene            complement(549..974)
                     /locus_tag="VF788_04350"
     CDS             complement(549..974)
                     /locus_tag="VF788_04350"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8933420.1"
                     /translation="MIDTDWSPQTSPCCSGTPVITVALSRPQPDTTVCTVTGAVDWNT
                     TPLVRDALTEARRDDNVHLVIDLSAVTSMDSAGPYTLLEARYKHHISGGGHLAVIANP
                     DSPAIPELQIVALKASFDFHANLADALHACASADTSTGH"
     gene            complement(1725..2537)
                     /locus_tag="VF788_04355"
     CDS             complement(1725..2537)
                     /locus_tag="VF788_04355"
                     /inference="COORDINATES: protein motif:HMM:TIGR03544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8933421.1"
                     /translation="MALTPAQVHSVAFSGPPIAKRGYHKDEVNAFLDVVETELARLLE
                     ENVALGNQLAHYDQQPNPGAIETAAGRPQPVFPPTRQPLSAGADAYHHAAKVLNQAQQ
                     TADRMTSQAKAEADALLSQARANAERLLRETQSGAEGLVSEAATQAETVIHDARTRAA
                     AVEQQSRDNVAKIVSQQQEQLRQHTDIITTLGVDKVALQHKIERLRLFEDDDYNHVTR
                     FLHAQLQQLVAQKSDGPADPISAQQGPAAGGSDAHPETSWPWSSSQKRALRL"
BASE COUNT          499 a          782 c          803 g          518 t
ORIGIN      
        1 tgtggtgatc aacgagggcg cgcttcggcg ggtcgtgggt ggccgggaag tgatgcgcgc
       61 tcagctgacc cgtttgatcg aggcgaccga attgcccaac gtggcactgc gggtgttgcc
      121 ctttgctgcc ggtgcccatc ctggcgtgga cggctcgttc accgtgctgg aattctccga
      181 tcccagcaac ccgcggattg tctatctgga ccggatgaca gacagcgagt acctcgatgg
      241 tctgcgggac gtcgcagcgt atcgtcacgc ccacgagcga ctacaagcct ccgcgctgtc
      301 ggtgagtgat tcccgtgaga tgatcaatag cctgttaagg gagctgagga gatgaccaag
      361 gatgatgtcc tcggctcggc aggcgccatg gtctgtgacc atgtcgaacg ctaaggccag
      421 gcacgcgcca cgacgctgag tgcagcggcc ccgttgccac cgttgtctgg ctggtcgaac
      481 actcgggatg tcgcgtgctg cgctggtcga gtgggcgagc gggtcgactg aatggccggc
      541 ctgttgcgct aatgaccagt gctggtatca gcgctggcgc aggcgtggag ggcgtcggcc
      601 aggttggcgt ggaagtcgaa ggatgccttg agcgcaacga tctgcagttc tgggatggcg
      661 ggagaatcgg ggttggctat gaccgctaga tgaccgccgc cactaatgtg gtgtttgtaa
      721 cgggcttcga gcaacgtgta gggaccagcc gagtccatgg aggtgacggc ggacaggtcg
      781 atgacgaggt ggacgttgtc gtcccgccgt gcctcggtga gtgcatctct caccagcggt
      841 gtggtgttcc aatccaccgc cccggtgacg gtgcacactg tcgtatcagg ctggggccga
      901 ctcaatgcca cggtgatgac cggcgtccca gaacaacacg gtgaggtttg cggggaccag
      961 tccgtatcga tcatggtcca actcctgtcc cgcagaggcg gtggagacga aacctggaca
     1021 cagccgcaac ggcaccatca ccgtcggtga cctcgcacgc gtatatgcaa tttacactgc
     1081 cacgtgttct acggcaacgt gcaatttcat tcacgatgca atttcaccgc ctgagtggag
     1141 ggcccacaac cgcctggtca gggacacgat actacggcgc gtgacgatat gtaacgtttc
     1201 gcagtcgata agcgattacg acataggcac acgattctta cttcacagca ggtgaaacct
     1261 tggctgcccg cactgttccg ttactgcggt cagcgcacca catactcccc tagcgtgcct
     1321 cgctcagccc tcgccacggc ggcagcgtat ggggttccaa aagccggtct acgccacttg
     1381 accggcactg ttgcattgag ccaaagggcg tcctcgccac ggctcaaagc agcagagcag
     1441 cctccgcaat ccccttaaag aatcatgaca aacgggcatc cgagccctgc cgcggggctt
     1501 ctaggcgggc agatgagacc agctcaagtg ggtcgatcgc tcaatgcaac agtgcctggc
     1561 caacttcact gccaacggcg tttccaatgg acccaccgaa gccatcaacc tgctaatcaa
     1621 gaaaatcaaa gagtcggcca ccggattccg caacttcaac aactaccgac tctggctgct
     1681 cctgcactgc ggcgtcgact gggacactac ccacgccagc ccgatcagag gcgtagagcc
     1741 cgtttttgag atgaagacca tggccaggat gtctcgggat gcgcgtcaga cccgccagcc
     1801 gctggacctt gctgggcact gatcgggtct gccggtccgt cggacttctg cgcgaccaac
     1861 tgttggagct gggcatgcaa aaaacgcgtc acatggttgt aatcgtcgtc ctcgaaaagg
     1921 cgcaagcgct caatcttgtg ctgcagggca accttgtcca cacccagcgt ggtaatgatg
     1981 tcggtgtgct gacgtagctg ttcctgctgt tgagatacga tcttggctac attgtcccgg
     2041 gactgctgct ctacagcggc ggcccgggtg cgggcatcat ggatcacagt ctcagcctgg
     2101 gttgcggcct cgctgaccaa gccctcggct cccgattgcg tctcacgcag cagccgctcg
     2161 gcattggcgc gggcctggct caacagggcg tcagcttcgg ccttggcctg gctggtcatc
     2221 cggtcggccg tctgttgagc ctgattgagc actttagcgg cgtggtggta agcatccgca
     2281 ccggccgaca gcggctgcct cgtcggcgga aacacgggct gtggccggcc cgccgcggtc
     2341 tcgatcgcac ccgggttcgg ctgctggtca taatgcgcaa gctgattacc tagagcgacg
     2401 ttttcctcaa gcaatcgagc caactcggtt tccaccacat caaggaaggc attcacctcg
     2461 tctttgtgat agcctcgctt ggctattggc ggcccgctaa atgcaacact atgcacctgc
     2521 gcgggggtta acgccatgac agcacctcac acactccctt gatgggtgaa tcggcgtggc
     2581 tggtcagccc ggaagagccc ag
//
LOCUS       DASVXZ010000225         4014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1189853, whole genome shotgun sequence.
ACCESSION   DASVXZ010000225 DASVXZ010000000
VERSION     DASVXZ010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1189853"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VF788_04360"
     CDS             complement(<1..682)
                     /locus_tag="VF788_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO1664 family protein"
                     /protein_id="HEX8933422.1"
                     /translation="MLPTDPAALPLLHHGRIDVTGRIVDASNATLLCTVDCDGVSAEC
                     VYKPIRGERPLWDFPDGTLAGREVASWLLSEATGWSLVPPTVLRPGPLGPGMVQLWVD
                     TDHRHSLVDVVALNAVPKGWRIVLRAQDRYGAPALLVHADTEGMRRLAVLDVLLNNAD
                     RKGGHVLAGLDGGVYGVDHGICLHREDKLRTVLWGFLGEPLSVTALDTLRRMRSELNG
                     SLGVALTEH"
     gene            complement(694..1260)
                     /locus_tag="VF788_04365"
     CDS             complement(694..1260)
                     /locus_tag="VF788_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3090 domain-containing protein"
                     /protein_id="HEX8933423.1"
                     /translation="MSRVIHVFRTPDRFVAGTVGEPGDRTFYLQAVDEAKVVSVQLEK
                     EQVAVLAERLSALLDEVIRRLGADAPAESGELALDTDPLCSPVEQEFRVGTMGLGWDV
                     ESRAIVVELLAVSEQEVDESMVLDDTEDGPDAVRVFLSLEQARAFAVRAERVISAGRR
                     PCPLCAEPLGPKGHICPRQNGYRRQVEA"
     gene            complement(1320..2015)
                     /locus_tag="VF788_04370"
     CDS             complement(1320..2015)
                     /locus_tag="VF788_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX8933424.1"
                     /translation="MGTVILLRHGRSTANTAGVLAGRTPMVALDEQGQVQADALVQRL
                     AQLPLAAVVCSPLQRCRDTVAPLAQARELEVTVDEGFIEVDYGEWTGRELRTLGKEPL
                     WKVVQTHPSGAVFPGGEALAAMQARAVTAVREWDTKLAAEHGPQMLWLACTHGDLIKA
                     ILADALGMHLDGFQRIVANPGSVSAVTYTETRPFVQRINDCADDLRSLVPPKRRRRRR
                     SSSDATPGGPTGH"
     gene            2051..3013
                     /locus_tag="VF788_04375"
     CDS             2051..3013
                     /locus_tag="VF788_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015101583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8933425.1"
                     /translation="MQQRYLGRSGLRVSRLALGTMTWGHDTDPEEAATELVAFVDAGG
                     TLVDTADVYNDGESERILGKLLADLIPRDEVVLATKAVARRDEGPFGGGASRVSLLVA
                     LDGSLRRLRTDHIDLWQLHAWDPAVPLEETLSTVADAVRAGKVRYVGVSNYTGWQLAT
                     AKATSEVPLVSTQVEYSLLERGVEREVAPAAAHHGVGLLPWAPLARGVLTGKYRNGTP
                     PSSRAASPHYARYVEHHRTERTNRIVQAVVTAADGLGVSPLEVALAWVRDRPGVVAPV
                     VGARDIAQLAGSLAAEEVELAPTIRAALDDVSAIELGYPERPLG"
     gene            complement(2970..3662)
                     /locus_tag="VF788_04380"
     CDS             complement(2970..3662)
                     /locus_tag="VF788_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX8933426.1"
                     /translation="MTTTVDIVLPCLDEAEALPAVLAAIPAGYRVLVVDNGSTDDTAA
                     VASACGATVVSEPRRGYGAAMHTGLLAATAELVGVLDADGSLPPHALPQLVMEVMGGT
                     DLAVGRRRPHAGAWPWHARAGNTVLAALLRRQGLPVHDIAPIRVARRQALLNLGITDR
                     GFGYPFELLLRAAAAGWRVREFDVEYRPRAGGRSKVSGSVRGTARAARDMTAAMRRVS
                     QADAPDSPARSH"
BASE COUNT          679 a         1422 c         1295 g          618 t
ORIGIN      
        1 catgctcggt aagcgcaact cccaacgagc cattcaactc cgatcgcatc ctgcgcagcg
       61 tgtccagggc tgtgacggac aacggctcac cgagaaagcc ccacagtacg gtccgcagct
      121 tgtcctcacg atgcaggcag atcccgtggt ctacgccgta cactccgcca tccaacccgg
      181 cgaggacatg cccgcccttg cggtcggcgt tattgaggag tacatccagc accgccagcc
      241 gacgcatgcc ctcggtgtcg gcgtgtacca gcaacgcggg ggccccatac cggtcctgcg
      301 cccgcagcac gatgcgccag ccttttggca ccgcgttgag ggcgactaca tccaccaggc
      361 tgtgcctgtg gtccgtgtct acccagagct gcaccatgcc gggccccagc ggtcctggcc
      421 gcaacaccgt gggcggcacc aatgaccagc ccgtagcctc ggagagcagc cagctggcca
      481 cttcacgtcc ggccagagtg ccgtccggga aatcccacag cggacgttcc ccgcggatcg
      541 gcttgtagac gcactcggcg ctgaccccat cacagtccac ggtgcacaac agggtggcat
      601 tggacgcgtc aacgatacgg ccggtcacgt cgatgcgccc gtggtgtagt aacggcagcg
      661 ccgccgggtc ggtgggcagc accacgggct cgctcaggcc tcgacctgac gacggtagcc
      721 gttctgccgt gggcagatgt gtcccttggg acccaacggc tcggcacaca gtggacaggg
      781 ccgccgcccc gccgagatca cgcgttcggc gcgaacagcg aacgcccgcg cctgctcgag
      841 tgacaggaac acccggactg catccgggcc gtcctccgtg tcatcgagca ccatcgactc
      901 gtccacttct tgctcactca ccgccaacag ctcgacgacg atcgcccgcg actccacgtc
      961 ccagccgagg cccatcgtgc cgacccggaa ttcctgctcg actggcgagc acaacgggtc
     1021 ggtgtccagc gcaagctccc cggactccgc gggggcatcg gcgcccaatc gacgaatgac
     1081 ctcgtcaagc agcgcggaca ggcgctccgc gagcaccgcg acttgctctt tctccagctg
     1141 cacactgacc accttggcct cgtcaacggc ctgcaagtag aaagtgcgat cgccaggctc
     1201 cccgaccgtg cccgcgacga accggtcagg ggtgcgaaaa acatggatga cacgggacat
     1261 ggcactaacg acactagagc actccgcgtg gtccggcagc ggccctccca cgctggtagc
     1321 taatgccccg tgggccctcc gggagtggcg tccgaggagg accggcgccg gcgccggcgc
     1381 ttgggcggga caagcgagcg cagatcgtca gcgcagtcgt tgattcgctg cacaaacggc
     1441 ctggtctcgg tataggtaac tgcgctgact gagcctgggt tggcgacgat ccgttggaaa
     1501 ccgtccaggt gcatacccag cgcgtcggcg aggatcgcct tgatcagatc gccgtgcgta
     1561 caggccaacc acaacatctg ggggccgtgc tccgcggcca acttggtgtc ccactcccgt
     1621 accgcggtca ccgcccgagc ctgcattgcg gccagagcct cgccaccggg aaacaccgct
     1681 cccgaaggat gcgtctgcac caccttccac aatggctcct tgcccagggt gcgcagttca
     1741 cgcccggtcc actcgccgta gtcgacctcg atgaacccct cgtcgacggt cacctccagc
     1801 tcgcgtgcct gcgccagcgg agccaccgtg tcccggcaac gctgcagcgg ggagcacacc
     1861 accgctgcga gcggcaactg cgccaggcgc tgaaccaacg catcggcctg cacctggccc
     1921 tgctcatcca gggcaaccat cggagttcgc ccagccagca ctcccgcggt gttcgccgtg
     1981 gaccggccat gtcgtagcag gatcacggtg cccacgccgc caccctacgc acccgctagc
     2041 gtgcaccccc gtgcaacagc gttatctggg ccgtagtggg ctgcgagtgt cccggctggc
     2101 tttgggcacc atgacgtggg gccacgacac cgaccctgag gaggccgcca ccgagctggt
     2161 agccttcgtc gacgccggcg ggaccctggt ggacaccgct gatgtgtaca acgacggtga
     2221 gtcggagcga atcctgggta agttgctggc cgacctcatc ccccgggacg aggtcgtgct
     2281 cgcgacgaag gcggtggcgc gccgcgacga gggaccattc ggtggggggg cgtcccgggt
     2341 gtcgttgctg gtggcactgg acgggtcgct gcgccggctt cgcactgatc acatcgacct
     2401 ctggcagttg cacgcctggg accctgcggt gccgctggaa gagacgctgt cgaccgtggc
     2461 cgatgcagtg cgcgccggca aagtccgcta tgtcggggtg tccaactaca ctggctggca
     2521 gttggccacc gcgaaggcga cctcagaggt gccgctcgtg tcgacccagg tggagtactc
     2581 gctgctggag cggggggtgg aacgcgaggt ggccccagcg gccgcgcatc atggcgtggg
     2641 tttgctgccg tgggcgccgc tggcccgcgg ggtgctcacc gggaagtacc gcaacggcac
     2701 cccgcccagc tcgcgggcgg catccccaca ctatgcccgg tatgtcgagc atcaccgcac
     2761 cgagcggacg aaccggatcg tgcaagccgt cgtcaccgcg gctgacgggc tgggcgtatc
     2821 cccgctggag gtggccctgg cctgggtgcg agaccggccg ggggtggtcg ccccggtcgt
     2881 cggagcgcgc gacatagccc aactggccgg ctcactggcc gccgaggagg tcgaactagc
     2941 cccgacgatc cgggccgcgt tggatgacgt cagtgcgatc gagctgggct atccggagcg
     3001 tccgcttggc tgacccgccg cattgcggct gtcatgtcac gggcagctcg cgccgtaccc
     3061 cgcaccgatc cagatacctt ggaacgcccg ccagcccgcg gtcggtactc gacatcgaac
     3121 tcgcgcactc gccagccggc ggcggcggct cgcaacagca actcaaacgg atatccgaaa
     3181 ccgcggtcgg ttatgcccag attcagcagc gcctgccggc gtgcgacccg gatcggtgcg
     3241 atgtcgtgca cgggcagtcc ctgacgtcgc agcagcgcag ccagtactgt gttgccggcc
     3301 ctggcgtgcc acggccaggc gccagcgtgc ggtctccggc gaccgactgc gagatctgtg
     3361 ccgcccatca cctccatgac cagctgcggc aacgcatgtg gtggcagcga tccgtctgcg
     3421 tccagtacac cgaccagctc agcggtcgcg gcaagcaacc cggtgtgcat cgcggcgccg
     3481 tagccgcgtc gcggctcgga caccacagtt gcaccgcatg cactcgcgac cgcagcagta
     3541 tcatcggtgc tgccgttgtc gacgacaaga acgcgatagc cggccggtat cgcggccagg
     3601 acagccggca gcgcctcggc ttcgtccagg cagggcagca cgatgtctac ggtggtagtc
     3661 acgttcgatg acgttatccc tacgacggag caaacaccgg ccaaactgat tacagatcaa
     3721 tcacagaacg ctgcgcagcg tcatcgacct acgccggagg tacccgtcat ctagcgtatt
     3781 aatgccaaca tccggatgcc gggggatgac gtgggggtgt cgggtcagga atgcttgact
     3841 gacgccgccc gaactgccgc ctaccgacaa ggaggtcggt gtgcccggtg ccctgcgcgt
     3901 ggccctgcct gccacgttgc tcgtcgtcgg gcttgtcacc ggatgcggca ctgtgcgcgg
     3961 ctcccccgac caacaagccg tcgcccctgc cgcgcccgcg gtggcgcccc cagg
//
LOCUS       DASVXZ010000226         5188 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_293356, whole genome shotgun sequence.
ACCESSION   DASVXZ010000226 DASVXZ010000000
VERSION     DASVXZ010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293356"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..738)
                     /locus_tag="VF788_04385"
     CDS             complement(<1..738)
                     /locus_tag="VF788_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX8933427.1"
                     /translation="MTPLSPLNAANVVDVQAHEALVAELRERLAAARQGGPARARQRH
                     LARGKLLARDRVDSLVDPSSPFLELSPLAATGMYGDEAPAAGIITGIGRVAGRECVIV
                     ANDATVKGGTYYPMTVKKHLRAQEVALHNRLPCIYLVDSGGAYLPEQDQVFPDREHFG
                     RIFYNQATMSAQGIPQIAAVLGSCTAGGAYLPAMSDEAVIVRKQGTIFLAGPPLVAAA
                     TGEVVTAEELGGAELHSRISGVTDHLAD"
     gene            complement(707..1357)
                     /locus_tag="VF788_04390"
     CDS             complement(707..1357)
                     /locus_tag="VF788_04390"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEX8933428.1"
                     /translation="MMINDLDSVDLHWVEAALAGLSAPAAPKLTGRIFGSWLAAPSRL
                     GEVFVAFTGDGVQFLRSAESVRGDAGAFAEAYRDRFGRPLRQADQAPAGLLTALRGTP
                     PASLRLDLCGLSDFERDVLTATCRIPAGQTRPYGWIAREAGRPRAVRAVGSVLGRNPL
                     PLLIPCHRVIRADGRLGDYMFGPAHKAELLRAEQVNIDELAALPGGDDPAEPAECG"
     gene            complement(1354..1980)
                     /locus_tag="VF788_04395"
     CDS             complement(1354..1980)
                     /locus_tag="VF788_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX8933429.1"
                     /translation="MALPMTPEGPQAQATGEELQQALIADLDSGFADMVHAYEGVVYA
                     VAMRLSRRPADAEDLSAEAFLHAYRALRGYDAQRISTLALRPWLLTILRNITRNAARD
                     AVRRPDPPPAFEPAEQPTTARSVEQQVEQRDVARELGVVLAALPEIQRTAVVLRHVVG
                     LPTSEVAKVLGCPDGTAKSHIWRGLRRLRALLTEQPDSSLLASGRTVR"
     gene            complement(2019..2591)
                     /locus_tag="VF788_04400"
     CDS             complement(2019..2591)
                     /locus_tag="VF788_04400"
                     /inference="COORDINATES: protein motif:HMM:NF021385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEX8933430.1"
                     /translation="MTTRGSNTVIMARHAYGEGSYRYFADPLPPLVQRLRESLYPPLT
                     AIANRWAQRLGERCFPEDLDGLLGECAALGQHKPTPLVLRYGPGGYNCLHQDVYGDLT
                     FPLQLLIMLSRPDEDFTGGESVFVEQRPRQQSRPMVARPRQGQAVIFPVRHRPKRGAR
                     GDHRVQMRHGVSAVHTGERHVLGIIFHNAR"
     gene            complement(2857..3780)
                     /locus_tag="VF788_04405"
     CDS             complement(2857..3780)
                     /locus_tag="VF788_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8933431.1"
                     /translation="MSRPPDPSSVRIPGPWTHREVSANGIRLHVAEAGAGPLVLLLHG
                     FPEFWWSWRHQLPALAAAGMRAVAVDLRGYGDSDKPPRGYDLWTLSGDVAGLVRALGE
                     RQADLVGHDWGGILGWCTAALHPRVVRSVAVLAAAHPRAMGQALLLDPAQRSAARYLA
                     EFQAPWLPERRITRDGAVLVEEVLRRGAGPQWRASSEFTAATRRYRQAMLIPAAAHCA
                     LEYYRWVGRSQFRFDGRRLSRAVDRAIRVPVLQLHGADDPYVLERTARCSARWTGDGY
                     RYEVLPGIGHFVQQEAPERTTALLTEFLHGA"
     gene            complement(3777..4289)
                     /locus_tag="VF788_04410"
     CDS             complement(3777..4289)
                     /locus_tag="VF788_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEX8933432.1"
                     /translation="MSPVSSAQPRHGRHAKPEPPPAVPAVPLSPVEFPQLADASLGEL
                     VREAATHFSTLFRAEVELAKTEVTTEVRKGVKGSLFFIIALTIILFSLFFLFITVAEV
                     LAIWLPQWAAFGIVFGMMLTAAGAFALVGWRRVRSIRKPERTISTVRDTGAALIHRRS
                     EHPSADPSRG"
     gene            complement(4482..4907)
                     /gene="arfB"
                     /locus_tag="VF788_04415"
     CDS             complement(4482..4907)
                     /gene="arfB"
                     /locus_tag="VF788_04415"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HEX8933433.1"
                     /translation="MTDGLAVGGSVSIPEAELRWRFSRSSGPGGQGVNTTDSRVELVF
                     DVAASTAFTPAQRARVLERLSSRLVDGVLTVVASEYRSQLRNRAATRVRLAAMLRQAL
                     APDPPPRRATRPSRAARERRLADKHRRTCTKQLRRTTEE"
     gene            complement(4938..>5188)
                     /locus_tag="VF788_04420"
     CDS             complement(4938..>5188)
                     /locus_tag="VF788_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007025877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase"
                     /protein_id="HEX8933434.1"
                     /translation="DEAQGEEAIKALRNHVAKEIGAIAKPRQIMVVADLPKTRSGKIM
                     RRLLRDVAEHREIGDVTTLADSSVMDLISSGMRSGSQE"
BASE COUNT          817 a         1819 c         1767 g          785 t
ORIGIN      
        1 atcagcgagg tgatcggtga ccccggagat gcgcgagtgc agctccgcgc cgccgagttc
       61 ctctgcggtc accacctccc cggtagcggc ggccactagc ggcgggccgg cgagaaagat
      121 cgtgccttgt ttgcggacaa tcaccgcctc gtcgctcatc gccggcaggt aggcacctcc
      181 cgccgtgcag gagcccaaca ccgccgcgat ctgcgggatg ccctgtgccg acatggtcgc
      241 ctggttgtag aagatccggc cgaagtgttc ccgatcgggg aacacctgat cctgctcagg
      301 caggtaggcg ccgccggagt cgaccaggta gatgcagggc aggcggttgt gcagcgccac
      361 ctcttgagcg cgcagatgct tcttgaccgt catcgggtag taggtgccgc ccttcacggt
      421 ggcgtcgttg gcgacgatca cgcactcgcg cccggccacc cgcccgatgc cggtgatgat
      481 tcccgcggcc ggggcctcgt cgccgtacat gccggtagcc gcgagcgggg agagctccag
      541 gaatggcgac gacgggtcca ccagcgagtc gacccggtcg cgggccagca gcttgccgcg
      601 tgcgagatga cgttgacgtg ctctcgccgg cccaccctgc cgggccgccg cgagccgctc
      661 ccgaagctcg gcaaccagcg cctcgtgcgc ctgcacgtca accacgttag ccgcattcag
      721 cgggctcagc ggggtcatcc ccgccgggga gcgcggcgag ttcgtcgata ttcacctgct
      781 ccgcgcgcag cagctccgct ttgtgtgcgg ggccgaacat gtagtcgccc aaccggccgt
      841 ctgcccggat cacgcggtgg cacgggatga gcagtggtag ggggttgcgc ccgagcaccg
      901 aaccgactgc gcgcactgcg cggggccgcc cggcctcgcg ggcgatccag ccgtaggggc
      961 gggtctgccc ggctgggata cggcaggtgg cggtgagcac gtcacgctcg aagtccgaca
     1021 gtccgcacag gtccagccgc agcgacgcgg gaggggtgcc gcgcaacgcg gtgagtagcc
     1081 cggccggtgc ctggtcagcc tggcgcaatg gccgcccgaa ccggtcgcga taggcctcgg
     1141 cgaacgcgcc ggcatcgccg cgcaccgact cggcggatcg gaggaactgc actccgtcgc
     1201 cggtgaaggc gacgaagacc tcgccgagcc ggctgggcgc ggccagccag ctgccgaaga
     1261 tccggcccgt cagcttaggc gcagcgggag cactgagccc ggccagcgcg gcctcgaccc
     1321 aatggagatc gaccgagtca agatcgttga tcatcatcga accgtccttc cggaggcgag
     1381 caggctggag tccggctgct cggtgagcaa cgcgcgcaat cgccgtaagc cccgccagat
     1441 gtgggacttg gccgtaccgt ccgggcaccc caagaccttg gcaacctcgc tggtcggtaa
     1501 gccgacgacg tggcgaagca ccacggccgt ccgctggatt tccggcagcg cggccagcac
     1561 cacgcccagc tcgcgcgcca cgtcccgctg ctcaacctgc tgctcgacgc tccgcgcggt
     1621 cgtgggctgc tccgcaggct cgaacgctgg cggtgggtct ggtcgccgca cggcgtcgcg
     1681 ggctgcgttg cgagtgatgt tgcgaaggat cgtgagcaac cacggccgca gcgcaagcgt
     1741 ggagatccgc tgggcgtcgt agccgcgcag tgcccggtag gcgtgcagga aggcctccgc
     1801 gctgaggtct tcggcatccg ctggacgtct gctcagccgc atcgcaaccg cgtagacgac
     1861 tccttcgtaa gcgtgaacca tgtcggcgaa accggagtcc aagtcggcga ttagggcctg
     1921 ctgcagctcc tcgccggttg cctgggcctg gggtccttcc ggtgtcatgg gcagggccat
     1981 cagttggatg atcctttcgt tgaatcgccg gactggcctc accgggcgtt gtggaagatg
     2041 atgccgagca cgtggcgctc gccggtgtgc accgcgctca cgccgtggcg catttgcacg
     2101 cggtgatcgc cacgggcgcc ccgtttgggc cggtgccgga cgggaaagat caccgcctgg
     2161 ccttggcgcg ggcgggccac catcggtcgc gactgttggc gcggtcgctg ctcgacgaac
     2221 acgctctccc cgccggtgaa gtcctcgtca ggccgactga gcatgatgag cagctggagc
     2281 gggaaggtga ggtcgccgta gacgtcctgg tgcaggcagt tgtagccgcc cggtccgtag
     2341 cgcagtacca ggggcgtggg cttgtgctgg ccgagcgccg cacactcgcc gagcagcccg
     2401 tcgaggtcct ccgggaagca gcgctcaccg aggcgctgcg cccaccggtt cgcgatcgcc
     2461 gttagcggcg ggtagagact ctcccgcagt ctctgtacca gcgggggcag cggatcggcg
     2521 aagtagcggt agctgccctc cccgtaggca tgccgcgcca tgatgacggt gttggaaccg
     2581 cgcgtcgtca tcgaccatgt ccacgactcc ggcgcattgc tcgggtgaga gcaacggcgc
     2641 ggtcacggcg aagccctcgt cgtcgagccg gcattccaac gccgaccagt cgagatcggc
     2701 cagcgtgggc agctccggca cgatcttgct ggtctccctc atgacgttct cctcgccgga
     2761 aatcgggagc gggtactccc ggatacctcg ctctgcccga acagaacccc actgcgcggg
     2821 ctcgggttgc acctcccctc tcgcgatgcc caggtgtcat gcgccgtgta ggaactcggt
     2881 cagtagtgcc gtggtgcgct cgggcgcttc ctgctgcacg aagtgcccga tccccggcag
     2941 cacctcatag cggtagccat cccccgtcca gcgggccgag cagcgtgccg tgcgttccag
     3001 cacgtacggg tcgtcggcgc cgtgtagctg caataccggc acccggatcg cccggtccac
     3061 cgcgcgggac aaccggcgcc catcgaaacg gaactgcgaa cggccgaccc accggtagta
     3121 ctccagcgcg caatgcgccg cagcggggat caacatggcc tgccggtagc gccgggtcgc
     3181 tgcggtgaac tcgctcgacg cccgccactg cggtcctgcg ccgcgacgca gcacctcttc
     3241 caccagcacc gcgccgtcgc gggtgatgcg tcgctcgggc agccagggag cttggaactc
     3301 agccaggtag cgggccgcag agcgctgcgc cgggtccagc agcagcgcct ggcccatggc
     3361 gcgaggatgc gcggcggcca gcaccgccac cgaacggacc acccgggggt gcagcgcggc
     3421 cgtgcaccag ccgaggattc caccccagtc atgcccgacc aggtcggctt ggcgttcccc
     3481 tagcgctcgg accaggcccg ccacgtcgcc ggagagcgtc cacaggtcat acccccgcgg
     3541 gggcttgtcg gaatcaccgt agccacgtag atccaccgcg accgcgcgca tacccgccgc
     3601 ggccagcgct gggagttggt ggcgccagga ccaccagaac tccggaaagc catgaagcag
     3661 gagcaccagc ggacccgctc ccgcctccgc cacatgcagc cggatcccgt tggccgatac
     3721 ctcgcggtgg gtccacggtc caggaatccg gaccgagctg gggtccgggg ggcggctcac
     3781 ccccgggatg ggtcagcgct ggggtgctcg ctgcgtcgat ggatcaacgc tgctccggtg
     3841 tcacggacag tgctgatcgt gcgctccggt ttccggatac tgcgcacccg gcgccaaccc
     3901 accagcgcga acgctcccgc agcggtcagc atcatcccga agacgatgcc gaaagcggcc
     3961 cactgcggca gccagatggc aagtacctcc gccaccgtga tgaacaagaa gaacaagctg
     4021 aacagaatga tcgtcagcgc aatgatgaag aaaaggctgc ctttgacacc cttgcggacc
     4081 tcagtggtca cctccgtctt ggccagctcc acttccgccc ggaacaaggt ggagaagtgg
     4141 gtggcggcct cccggaccaa ctcgcccaga gacgcatcgg cgagctgcgg gaactccact
     4201 ggtgacagcg ggacagcagg caccgcaggc ggtggttcag gtttggcgtg ccggccgtgg
     4261 cgaggctgag cgctgctcac gggcgacatc gtgccacggc ccgatttcga tcactcactg
     4321 tggctacccc actcactctc cgtggtaacc ggggcacacc gccacggccg ctggcgtcca
     4381 cgtcgtgatc tgtggacgcc gtcgtggtca gcaggttcca cccagccagt agacaatcgt
     4441 cgtccactgg ctcccgggac ggcggtcagg ccgaacccgg ctcattcctc cgtcgtcctg
     4501 cgcagctgct tggtgcacgt ccggcgatgc ttgtcggcca gacggcgctc ccgcgcagca
     4561 cgggaggggc gcgtcgcccg gcgcggcggc gggtccgggg ccagcgcctg gcgcagcatg
     4621 gccgccaggc ggacccgtgt ggccgcccgg ttgcgtaact gggagcggta ctcggaggcg
     4681 accacggtga gtaccccgtc caccagccgg ctggagagcc gctccagcac acgagcacgc
     4741 tgcgctggag tgaacgccgt gctcgcggcc acatcgaaga ccagctcgac gcgcgaatcg
     4801 gtggtgttca cgccctgccc gcccgggcca ctcgaccgcg agaagcgcca ccgcagctcc
     4861 gcctcgggaa tcgagaccga gccacccacc gccagcccgt cagtcacatc tccagcatgc
     4921 ccgcttgccg acgctgccta ctcctgggag ccggaccgca tgccggaaga gatgaggtcc
     4981 atcaccgacg agtcggccag cgtggtgacg tcaccgatct cgcggtgttc ggctacgtcc
     5041 cggagcaacc tgcgcatgat cttgccggat ctggtcttgg gcaggtcggc gacgaccatg
     5101 atctgccggg gcttggcgat cgcgccgatc tccttggcca cgtggttgcg tagcgccttg
     5161 atcgcctctt caccctgtgc ctcgtcct
//
LOCUS       DASVXZ010000227         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_204162, whole genome shotgun sequence.
ACCESSION   DASVXZ010000227 DASVXZ010000000
VERSION     DASVXZ010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204162"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1777
                     /locus_tag="VF788_04425"
     CDS             <1..>1777
                     /locus_tag="VF788_04425"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8933435.1"
                     /translation="VFAEVCEHYAAITQGRAPELVARRPFREYLHWLTEQDQSQAEQH
                     WRTVLSGFDARTALPYDRPPRQAHRSESSESMDTHLSVQDTSRLHSVAKRNGLTVNTI
                     VQGAWALLLSRYSGQSDVVFGTTVSGRPAELAGVESMVGMFINTIPTRACIKETDTVA
                     GWLRALQTAQIDSRRFDFCSLAQIQAYSELPAGSALFDSMVVFENYPFDSATVTEAGL
                     HLRDIHVRETTNFPLSMQASLGERLGLRLAYDPQLFDASTVERIVGHLLVLLGGIAAD
                     PDQLMAEVPLLSTAERDRLLVGWNDTHQIRPTATLPELFADQVTRTPDAVALVVAGEE
                     FTYAELNARANRLAHWLIARGVGPEQFVGLALERSAELIVVLLAVGKAGAAYLPIDVT
                     HPPARIGFICADADPVIVLGTQRSIGCLPAGVTRLVIDDPGTIPDIVACSADEVTDAE
                     RIRPLLDTHPAYVIYTSGSTGRPKGVVVAHRSVVDLVGWAAGEFGASGLSRVVASTSL
                     NFDVSVFEIFCPLCVGGSIQLIRDVLALGESAQGELTQGETGAPERVASLVSGVPSAL
                     AQGLSLGGAVRADTVVLAGEALPARV"
BASE COUNT          278 a          508 c          609 g          382 t
ORIGIN      
        1 cggtgttcgc cgaggtctgc gagcactacg cggcgatcac ccagggccgc gcaccagagt
       61 tggtggcccg gcgcccgttc cgggaatatc tgcactggct gaccgagcag gaccaatctc
      121 aggccgagca acattggcgg acagtgctgt ccggattcga tgcccggacc gcgctgcctt
      181 atgaccgccc accccgccag gcccaccgat ccgagtcctc ggaatcgatg gacacccacc
      241 tcagcgtgca ggacaccagc cggttacaca gcgtggccaa gcgcaatggc ttgacggtca
      301 acacgattgt gcagggcgcc tgggcgctgt tgctgtcgcg ttacagcggc caatctgatg
      361 tggtgttcgg gaccaccgtg tccgggcgcc cggccgagct ggccggggtg gaatcgatgg
      421 tgggcatgtt catcaacacc atccccaccc gtgcctgtat taaggaaacc gacaccgtgg
      481 ccggctggct acgcgcgttg caaaccgcgc agatcgactc ccggcggttc gatttctgct
      541 ccttggcgca aatccaggcc tacagtgagc ttcccgcggg cagcgccctg ttcgacagca
      601 tggtcgtgtt cgagaattac cccttcgatt ccgcaacagt caccgaagcc ggtctgcatc
      661 tgcgtgacat tcacgtccgg gagaccacca acttcccgct gagcatgcaa gcctcgctcg
      721 gtgagcggct gggccttcgc ctggcctatg acccgcaact gttcgatgcc tcgacggtcg
      781 agcggatagt gggtcattta ttggtgttgt tgggtgggat cgcggccgat cctgatcagt
      841 tgatggctga ggtcccgctg ttgagtactg cggagcggga tcggctgctg gtgggctgga
      901 atgacaccca ccagatcagg cccacggcaa ctttgcctga gttgttcgct gaccaggtga
      961 cccgcacgcc ggatgcggtg gctctggtgg ttgccggtga ggagttcacc tacgctgagt
     1021 tgaatgctcg ggccaaccgt ttggcgcact ggttgatcgc ccgaggagtg gggcccgagc
     1081 agttcgttgg gctggccctg gaacggtccg cggaactcat cgtggtgttg ttggcggtgg
     1141 gtaaggcggg tgcggcttat ttgccgatcg atgtgactca tccaccggcc cggatcggtt
     1201 tcatctgtgc tgatgcggac ccggttatcg tgttgggcac ccagcgcagt attgggtgct
     1261 tacccgcggg tgtgacccgg ttggtgatcg atgatcccgg cactatcccg gatatcgttg
     1321 cctgttctgc tgatgaagtc accgacgctg agcggatacg accgctattg gatactcatc
     1381 ccgcgtatgt gatctacacc tcgggatcga cggggcgtcc caagggtgtg gtggttgcgc
     1441 accggagtgt ggttgatctg gtggggtggg ccgctgggga attcggtgcc tcagggttgt
     1501 cgagagtggt ggcctcgacg tcgctgaatt tcgacgtgtc ggtattcgag attttttgcc
     1561 cgttgtgtgt cggcggcagt attcagctga tccgagacgt gctggcccta ggtgagtcgg
     1621 cacagggtga attgacacag ggtgagaccg gagctcctga gcgggtggcg agtctggtca
     1681 gcggggttcc ctcggcgctg gctcagggct tgtccctggg tggggcggtg cgggcggaca
     1741 ccgtggtatt ggctggagag gcgcttccgg cccgggt
//
LOCUS       DASVXZ010000228         2895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_114660, whole genome shotgun sequence.
ACCESSION   DASVXZ010000228 DASVXZ010000000
VERSION     DASVXZ010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114660"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1210)
                     /locus_tag="VF788_04430"
     CDS             complement(<1..1210)
                     /locus_tag="VF788_04430"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8933436.1"
                     /translation="MSSDELAGLHVLLTGATGFLGQATLERLLSSYPDTRVSVLIRPR
                     GERSAADRLSALLRKNVFRPLTELLGADGLARAVQQRVSVIGGDLRSVTLPADLDVVI
                     HGASTVSFDPPVDEAFRTNVSGVATLYEALTGSPHVVHISTAYVAGTRKGVVAEAALD
                     HEVDWRLELEMALAARTDVERDSRRPEVLRQVLAQASEEHAKAGPQSTAADAERLRIE
                     WVTRRLVDYGRTRAQSLGWPDVYTLTKALGERAAEQLWAKAGRPLSVVRPAIVESALR
                     HPYPGWIDGFKMADPLIIALGRGVLREFPGLPDSVVDVIPVDLVVNAILAAAARPPTH
                     PPGTPVYLHVSSGASNPLTFQSMYVLCREYFDSHPMPDGDRGHVAPPTWRFPGSQQVE
                     LTLRAGERAAA"
     gene            complement(1275..2504)
                     /gene="larC"
                     /locus_tag="VF788_04435"
     CDS             complement(1275..2504)
                     /gene="larC"
                     /locus_tag="VF788_04435"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarC"
                     /protein_id="HEX8933437.1"
                     /translation="MTEPRAAYLDCTAGVAGDMLLGALLDAGADLDVVRSAVRSLGVP
                     GLDIGVQQARRCGLRCAKAAVNAPATSQPTRGLADVLAAIDGAQLSPAAALMAADTFR
                     LLADAEAEVHGMPPELVHFHEVGAADALADVVGVAVAAEQLGMLADDALVRCSALAAG
                     SGMVRGAHGTIPVPAPAVLQIVAHRGLSLTDGNLVGERTTPTGAALVAIMATPGPLPP
                     MTVKSVGSGAGYHDSPERPNITRVLIGCRTESEAAPGPVEPVIVVETTVDDLEPELWP
                     GVLLAVRAAGAWDCWTTATIGRHGRPGQVLTALCTEQIRPAVVDALFRHSTTLGVRWT
                     PWQRSTLPRITVPVPVGPRGGEHEITVKVAAGPGGQTAKPELADAERVAQALGWPVRR
                     VCEAALSAYHRTHPGDP"
     gene            complement(2497..>2895)
                     /locus_tag="VF788_04440"
     CDS             complement(2497..>2895)
                     /locus_tag="VF788_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003078397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AIR carboxylase family protein"
                     /protein_id="HEX8933438.1"
                     /translation="RGTSDLPVAHETIATLLALGAGHRLITDVGVAGLHRLFAYLDQL
                     SEADCVIAIAGMEGTLPGVVTGLIRTPVVGVPTSVGYGVSACGHVAAAAMLASCAPGL
                     SVVNIDNGFGAAAHAVKIVEKVHGGKVHSD"
BASE COUNT          462 a          994 c          992 g          447 t
ORIGIN      
        1 gtgctgcggc ccgttccccg gcgcgcagcg tcaactccac ctgctggctg ccggggaagc
       61 gccaggtcgg aggcgcaacg tgcccgcgat caccatcggg catcgggtgg ctgtcgaagt
      121 attcccggca cagcacgtac atgctctgaa aggtcagcgg attgctggca ccggagctga
      181 cgtgcaggta taccggagtg ccgggtggat gggtaggggg ccgggccgcc gccgcgagaa
      241 tggcgttgac cacgaggtcc accgggatca cgtcaaccac ggaatcgggc aacccaggaa
      301 attctcggag cactccgcgg ccaagtgcga tgatcagcgg gtcggccatc ttgaagccgt
      361 cgatccaccc cggatacggg tgccgcagcg cgctctccac gatggccggg cgaaccaccg
      421 acagtggccg ccccgctttc gcccacagct gttcggccgc ccgctcaccc agggccttgg
      481 tcagggtgta gacatccggc cagcccaggc tctgggcgcg ggtgcggccg tagtccacca
      541 gccgacgggt gacccactcg atgcgcagcc gttcggcgtc ggcggcggtg gattgtgggc
      601 cggctttggc gtgttcctcg ctcgcttggg ccaaaacttg acgcagcacc tccggtcgtc
      661 gcgagtcccg ttccacatcg gtccgggcgg ccagcgccat ctccagttcc agacgccagt
      721 ccacctcgtg gtccagggcc gcctcggcga cgacgccctt gcgggtcccc gcgacgtagg
      781 cggtggagat gtgtaccacg tgcggcgagc cggtgagcgc ttcatacagc gttgctacgc
      841 ctgagacatt cgtgcggaac gcttcgtcga ccggcggatc gaaggacacc gtcgaggcac
      901 cgtggatcac gacgtcgaga tcggcgggca gggtgaccga gcggaggtct cccccgatga
      961 cactgacccg ctgctggacc gctcgcgcca gtccatcggc cccgagtagc tcagtcaacg
     1021 ggcgaaagac gttcttgcgg agcaacgcgc tgagccggtc ggctgcgctt cgctcgcccc
     1081 gcggccggat cagtacggag acacgggtgt ccgggtagct ggacagcagc cgctccaagg
     1141 tcgcctggcc aaggaagccg gtggcgccgg tgagcagcac atgcaatccg gcgagctcgt
     1201 cggaactcat ggttcgaccc taggggcgct ccgagcccgt gagtggcatt gggtgctata
     1261 acactgtttc ccactcacgg gtcgcccgga tgggtgcggt ggtaggccga tagggcggcc
     1321 tcgcacaccc gtcgcaccgg ccagcccagc gcttgggcga cccgttcggc gtcagcgagt
     1381 tcaggtttag cggtctgacc ccccggtccg gcggcgacct tgacggtgat ctcgtgctcc
     1441 ccaccgcggg gaccgaccgg caccggcacg gtgatccgcg gcagggtcga gcgctgccag
     1501 ggtgtccatc gcacaccgag cgtggtgctg tgccggaaca acgcatccac caccgcgggg
     1561 cggatctgct cggtgcacaa ggcggtgagt acctggccgg gcctgccgtg ccgaccaatg
     1621 gtggcggttg tccagcaatc ccaggctccg gcagcccgga cggccaacag cacccccggc
     1681 catagctcgg gctcgagatc gtcgacggtg gtttccacga cgatcaccgg ctcgacaggg
     1741 ccaggcgctg cttccgactc ggtacggcaa ccgatcagca ccctggtgat gttgggtcgc
     1801 tccgggctgt cgtggtatcc ggcgccgctg ccgaccgact tgactgtcat cggcggtaac
     1861 gggccaggtg tcgccatgat cgcgaccaac gccgccccag tgggtgtggt gcgttcgccg
     1921 accaggttac cgtcggtcag cgacaaacca cgatgggcaa cgatctggag gacggctggt
     1981 gcgggcaccg ggatggtgcc gtgtgcgccg cgcaccattc cgctgccggc ggccagtgcc
     2041 gaacacctca ccagcgcatc gtcagcgagc ataccgagct gctcggcggc gaccgcgacg
     2101 ccgaccacgt cggccagggc gtcggccgcc cctacctcat ggaaatgtac aagttccgga
     2161 ggcatgccgt gcacctccgc ctccgcatca gcgagcagcc ggaaagtgtc cgcggccatc
     2221 agcgcggcag ctgggctcag ctgggcgccg tcaatggcgg ccagcacgtc ggctagcccg
     2281 cgggtgggtt ggctggtggc tggggcgttg accgccgcct tcgcgcagcg cagcccgcag
     2341 cgccgggcct gttgcacccc gatgtcaagg ccgggcaccc ccagcgaacg tactgcggag
     2401 cgcaccacgt caaggtcagc accggcgtcg agcaacgcgc cgagcagcat gtcaccggcc
     2461 acaccggcgg tacagtccag ataggctgcc ctcggctcag tcactgtgca ccttgccacc
     2521 gtgcaccttc tcaacgatct tgacggcgtg tgccgccgcg ccgaagccgt tgtcgatgtt
     2581 gaccactgac agcccaggtg cgcaggaggc gagcatcgcc gccgcggcga cgtgcccgca
     2641 tgcgctcact ccgtagccca cactggttgg tacgccgacg acgggtgttc ggatcaggcc
     2701 ggtcaccacg ccgggcaggg tgccttccat cccggcgatg gcgatcacgc agtcggcttc
     2761 ggacaattgg tcaaggtagg cgaacaatcg gtgcaggccc gcaaccccga catcggtgat
     2821 caaccggtgg ccggcgccca gcgcgagcag ggtggcgatc gtctcgtgcg ccaccggtag
     2881 atccgaggtg cctct
//
LOCUS       DASVXZ010000229         6313 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_831712, whole genome shotgun sequence.
ACCESSION   DASVXZ010000229 DASVXZ010000000
VERSION     DASVXZ010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6313
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_831712"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..277
                     /locus_tag="VF788_04445"
     CDS             <1..277
                     /locus_tag="VF788_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933439.1"
                     /translation="TEAPRAMLRRMVTRLAELAVLGARDPREAVAPLVEALIELREQA
                     REQGSWALADTLRDRLTAARIEVRDTPNGPLWLLTNPLGPHSAGSAG"
     gene            complement(556..1035)
                     /locus_tag="VF788_04450"
     CDS             complement(556..1035)
                     /locus_tag="VF788_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933440.1"
                     /translation="MLHLTCALNAAALRQPDESADHEAEAADVAAGVGAGTDFGHQGF
                     GLANYGFWQVHLAVERGEGAKVGELAHGIDPAATKLGASRRAGFYTDLGRGLATERSH
                     RLEAIAALRTAEHLAPQRVRANPFVRETVTDLLRRPRRDAVGRELRGMAYRMGIGIG"
     gene            1733..1987
                     /locus_tag="VF788_04455"
     CDS             1733..1987
                     /locus_tag="VF788_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8933441.1"
                     /translation="MDWRDRAACRDEDPELFFPVGTSGPALLQIAEAKAVCRRCQVSS
                     ECLKWALASGQDAGVWGCMSEDERRALKRRNAGTGTRINS"
     gene            complement(2221..2418)
                     /locus_tag="VF788_04460"
     CDS             complement(2221..2418)
                     /locus_tag="VF788_04460"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933442.1"
                     /translation="MRRELLDRILIVNERHLRRILAVYLQHFNTARPHRTLGQLTPAQ
                     AENQPPSDQPGAPSDPPQTDP"
     gene            complement(2388..2732)
                     /locus_tag="VF788_04465"
     CDS             complement(2388..2732)
                     /locus_tag="VF788_04465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933443.1"
                     /translation="MDFLHVDTVLLKRIYALIAVEHGSRRAHLIGVATHPTGAWTTQA
                     ARNLLMDLADRASAITVLLRDRDCRFTTAFDAVFTADGIRILQSAQSATGERDLRTHD
                     RRPCAASYSTGS"
     gene            3171..5156
                     /locus_tag="VF788_04470"
     CDS             3171..5156
                     /locus_tag="VF788_04470"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX8933444.1"
                     /translation="MLEGPPNPAKPGQALDPFQAVLCPPRAHLLGSSGEHEIDIAETR
                     LDLHPALPPVLVWGFGSRGQVHVPGPLLEVTADQPVVVRWRNRLPASVLPEAPAALPF
                     VTAVVEDPDPDNDSVQNYLGDQGGTPENTAIAPIGWTSVHLHGGHTRADADGFPDNMM
                     ATGGMQISGYDNTADNLDLGLRKVGAFLWYHDHAMNGTRYHVYAGLAGSYFIRDPHEA
                     ALGLPTSAEQGEILLMLADRNLTVGADGLRLLHKTTVHNGNPDTAEFFGPLTLVDGKL
                     WPQLPLRPMVYRLRLLNSSNARTYRLHLVSVTAGGAVNPQHDRVLVIGTDGGLMWRPW
                     QLAGTDALTLAPSERIDVLVNLAGLPAGEQLYLINSAPAPFGGEPAGNLTDLFATGDR
                     PGRNPYPWVLRIDIDPHAPTPGRPAGLYPEIAGTELNPDFRRLAHDATGPVSGDEPPP
                     LEITGHAHRTILLAETHTPGHLYLQEIVEDVDGGIELQLPGATAPRRYRVENWLASDK
                     APSSTRVSFYDRISLRPQLRQWQLWQFVNATGDTHPMHIHQSVFQPLGVTGARLVVTD
                     DGGNNLYDPDTRTTSAPLLLDPDHQGRRFEPSETHGWKDVIRVDPGNMVSVAVRFDLP
                     GRYVYHCHIVEHEDTEMMRPFVVTVTDMADGMGGMPM"
     gene            complement(5538..6313)
                     /locus_tag="VF788_04475"
                     /pseudo
     CDS             complement(5538..6313)
                     /locus_tag="VF788_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020114738.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
BASE COUNT         1026 a         2002 c         2186 g         1099 t
ORIGIN      
        1 caccgaggct ccccgggcca tgctgcgccg gatggtgaca cgattggccg aactcgccgt
       61 gctgggtgcg cgggacccac gagaggctgt cgcgcccctc gtcgaggcgc tcatcgagct
      121 acgggagcag gctcgcgaac aaggctcgtg ggcgctcgct gacaccctcc gtgatcgtct
      181 caccgccgcc aggatcgaag tacgcgacac ccccaatggc ccactctggc tgctcacaaa
      241 tccactcggc ccccattcag caggctcagc gggatagaaa aaggtgcgat taattccgtt
      301 gagtccggtg agtctccgct agttatgtcg ttccggaatg gagaccgagc acggcagcac
      361 cgctggcctg cacagccggg catgctgggc gcatccgggc gttggccagg agcaactcgg
      421 ccaacgcctc gcccgggtgc gaggaggcct agcgggacag tgcatcgcat gcacgtcggc
      481 ggcggtatcg gtcaagagag gagactgtgg ctgctattcc catcggaacc ttgcctcgca
      541 ggcaagatca cccagtcagc cgatgccgat acccatccgg taggccatcc ctcgcagttc
      601 ccggcccacg gcgtcgcggc gtggtcggcg caggaggtcg gtgacggttt cgcggacgaa
      661 cgggttggct cgaactcgtt gcggcgcgag atgttcggcg gtgcgcagcg cggcgatcgc
      721 ctccagccgg tgtgaccgct cggtggccag accccggccg agatcggtat agaaccccgc
      781 tcgccgggac gccccgagtt tcgtcgcggc cggatcgatg ccgtgggcta gctcgccgac
      841 cttggctccc tcgccacgct ccaccgcaag gtgaacctgc cagaacccat agttagccag
      901 tccgaagccc tgatgcccga agtcggtccc ggcgccgacc cctgcagcca catcggcagc
      961 ttcggcctcg tggtcggccg actcgtcagg ttggcgcagc gccgcggcgt taagcgcgca
     1021 cgtgaggtgc agcattccgt acattccgcc gcggccatat ccgtgccgac cgttggtgca
     1081 atccggtcgg cggcacgggc cgcaagtgtc aagctgcgcg cccgagctgg gctggatacg
     1141 gcgtgcgcgc ggagcaactc ggccaaggcg gtgtgggctg gcgattcgag ttcggcggcc
     1201 accgcgcagg cgtgcagcgc cgcaacggtg gccaagtccg gtgcgccgag gtgcttggcg
     1261 atgaacgtag ctgcggtgta ggcgtccaac agtcccgcca gcgccctcgc agcggtggac
     1321 cggatcgctg gcagcatgcg cgtgcaagtc cgtaatcagg ttgggcaaca cgacccttca
     1381 cttgagacac acctgttgag gtgactcctt gactggggtg actcctgtca agctttggca
     1441 ccgcacaggc tattcggcga cgtggccccg cgctcgtcac ccggtcctac agctccctga
     1501 tcagtctggc agcgccgacc gctgagctgg ccgtttatac cgacggtcgt atgtcacggc
     1561 agccgttcag cgcgcgtgct ggtctcttcg ccgcaacagg gtagctactc gcagcaacag
     1621 cagtgaagat cgtggcccaa ggcgatgaac tgttgaagat attcacagat taatgaccac
     1681 gggacagcgc cgggataccg gtcgttcgat agacattaag gagcaaggaa ccatggactg
     1741 gcgtgaccgc gcagcctgta gagatgagga tccggagctg tttttcccag tagggacgag
     1801 cggtcccgcg ttgctgcaga tcgccgaggc gaaggctgtg tgtcggcgct gtcaggttag
     1861 ttctgagtgt ctcaagtggg cgctggcctc agggcaggat gctggcgtgt ggggttgtat
     1921 gagcgaggac gagcggcgcg cgctcaagcg gcgcaacgca ggcaccggga cccgtatcaa
     1981 ctcctgagcc tgatagcgtc cgaacggcgc tgttgcgttg tgtgaagcgg tggcaggctg
     2041 catccgttcc tgtggtctga tcagatcgcc tcggccagct cggtgaaggc agtcaccatt
     2101 cgcagcgtcg cggcagagct aacagcctgt ggggctcgaa tattggattg tgggcttgac
     2161 ctgtgggttt gggtacccgt ggtggatcat gctgcaatct gatacccact ggtgagcccg
     2221 tcagggatcg gtctgcggtg gatctgatgg tgcgccaggt tgatcgctgg ggggttggtt
     2281 ttcggcctgg gctggtgtga gttgcccgag tgtccggtgt gggcgtgcgg tgttgaagtg
     2341 ctgcaggtag acggccagga tccggcgcag gtgacgttcg ttgacgatca ggatcctgtc
     2401 gagtagctcg cggcgcaggg cctgcgatca tgcgttcgca gatcgcgttc gcccgtggcg
     2461 ctctgggcgg actgaaggat gcggatgccg tctgcggtga agaccgcatc gaaggctgtg
     2521 gtgaaccgac agtcccggtc ccggagcaag accgtgatcg cgctggcgcg gtcggcgaga
     2581 tccatcagca ggttgcgggc ggcttgagtg gtccacgcac cggtcggatg cgtcgccact
     2641 ccgatcagat gtgcccggcg ggagccatgt tcgaccgcga tcagtgcgta gattcgtttg
     2701 agtaacacgg tgtccacgtg caggaagtcc acagccagga cggtcttggc ttgcgcggtg
     2761 aggaactgtc tccaggtcgg actcgaccgg cgtggcgcgg ggttcaggcc ggcgtcacgg
     2821 gaggatctgc cacacgggtg gaggcagcga tgtggtgccg agtcggttca attcgccttg
     2881 cacgcgccga tgtccccaga tgggattctc cgccgccatg cggatgacca gcttcttggt
     2941 cgctgctgcg gtcgggggac gtccgagatg gcgacgtgcg gtgtaatccc atttcgcgag
     3001 atcaatctgc ggtgccaggc cacgatggtg gagggagtga ccgggaagat tcctgcccag
     3061 cacccacgtg gcacgagccg ggaaagggca gccagccaca tccggtcgat agcggctggg
     3121 ccagcgaaac ttggatgcac ccggcgggcg cggtgtggaa gcctgcagcg atgctcgagg
     3181 gacctccgaa cccggccaag cccgggcagg ctctggatcc gttccaggct gtgttgtgtc
     3241 cgccccgtgc ccacttgctc ggctccagcg gtgagcacga gatcgacatc gccgagaccc
     3301 ggttggacct gcatcccgcc ctaccacctg ttctggtctg gggctttggc agtcgcggtc
     3361 aggtgcacgt gcctggccca ctactggagg tgacggcgga tcagccggtg gtagtgcgct
     3421 ggcgaaaccg gttgccggcc tcggtgcttc cggaggcgcc ggccgccttg ccattcgtaa
     3481 ccgcggtcgt cgaggatccg gacccggaca acgactcggt gcagaattac ctaggcgatc
     3541 agggcggcac tccggagaac accgcgatag ctccgatagg ctggacatcg gtgcacctac
     3601 acggcgggca tacccgggcc gacgccgacg gcttcccgga caacatgatg gccaccggtg
     3661 ggatgcagat cagcggctac gacaacaccg cggacaacct ggatctcggg ctgcgcaagg
     3721 tcggcgcttt cctctggtac cacgaccacg cgatgaacgg cacccgctac cacgtctacg
     3781 ccggtctggc cggcagctac ttcatccggg acccgcacga ggcggcgctg ggcctgccca
     3841 ctagcgcgga gcagggtgaa atcctgctca tgctggccga ccgcaacctc accgttgggg
     3901 cggacgggct gcggctgctg cacaagacga cagtgcataa cggcaatccc gataccgccg
     3961 agttcttcgg cccgctgacc ctggtggacg gcaagctgtg gccgcagcta ccgctgcgcc
     4021 cgatggtgta ccgactgcgg ctgctcaaca gctccaacgc gcgcacctac cgtttacatc
     4081 tggtgtcggt gaccgctggc ggcgcggtca acccgcagca cgaccgggtg ttggtgatcg
     4141 gcacggacgg cgggctgatg tggcggccct ggcaactggc gggcaccgac gcgctgaccc
     4201 tggcgccgtc ggagcgcatc gacgtgctgg tcaacctggc cggcctgccc gccggcgagc
     4261 agctttacct gattaactcc gcgccggcac cgttcggtgg tgagccggcg ggcaatctga
     4321 ctgacctgtt cgcgaccggc gaccggccgg gccgcaaccc gtacccgtgg gtgttgcgca
     4381 tcgacattga cccgcacgca ccgacgccag gtcgcccggc cggactgtat cccgagatcg
     4441 cgggtaccga gctcaacccg gacttccggc gcttggcgca tgatgccacc ggcccggtat
     4501 ccggcgacga acccccgccg ttggaaatca ctggccacgc gcaccggacg atcctgctgg
     4561 ccgagaccca taccccaggt cacctgtacc tgcaggagat cgtcgaggat gtcgacggtg
     4621 ggatcgagct gcaactgccc ggtgcgacgg caccgcgccg ctaccgcgtg gagaactggc
     4681 tggcctccga caaagcgccg tctagtaccc gggtctcgtt ctatgaccgg atttcactgc
     4741 gcccccagct gcgccaatgg cagctgtggc agttcgtcaa cgccaccggt gacacccacc
     4801 ccatgcacat tcaccagtcg gtgttccagc cgttgggcgt gactggggcg cggctggtgg
     4861 tgactgatga cggtgggaac aacctctacg accccgacac ccggaccacg tcagcgccgc
     4921 tgctactcga cccagaccac cagggtcggc gtttcgagcc gtccgagacc cacggctgga
     4981 aggacgtcat ccgggtcgat ccgggcaaca tggtgagcgt cgcggtgcga ttcgacctgc
     5041 ccggacgcta tgtctaccac tgccacatcg tcgagcacga ggacaccgag atgatgcgcc
     5101 ccttcgtcgt caccgtcacc gacatggcag acggcatggg cggcatgccg atgtgactcg
     5161 ggttgggtgg gaccagatcg gcccctcctg cggttggcga gcagctcaac gagacgttgg
     5221 gtgatcggcg cggcaccgtc aacttgctgg gactgggggc gttggtaaga acggtgtcat
     5281 gagccgccaa cgaggctgtt gctgctggtc acatactgat cgttttccgc gttgggcgct
     5341 gtcttgaaat ccaaagcgct gcgactgcga tgcgctgacc aggcgatata ctgcggattg
     5401 cggctccaga gagggttctc gggctggtga gcgggcaggg catcaacctt tggaagtcgc
     5461 aggctcctgc tcaatgaggg ccaagatcgg aagtgttcgg ttgggtttcg ccttgtggca
     5521 gtggttggcc aacaggctca cccgcgcagt gcttggctga tccgcgctgc ctgccgggtg
     5581 aggtggtggc gttcggcgag gttaggggcg gaccgggcgg cgtcggcata cagccgtgcc
     5641 gcggtccgaa ggtcgcccgc cttcgtggag gtacgccgag gcggcggtgt ggcggggcag
     5701 gccagggtcc acggtggcca aggccgcgag gccggccagg gggccatcgg cctggccgat
     5761 cgcgatggcc cggttgagct gcacgaccgg gctctcggtg agccggagca gctcgtcgta
     5821 ccagccgacg atctgcaccc agtcggtctc ctcggcgcgc ggcgcgtcgg cgtgcagggc
     5881 ggcgatagcg gcctgtgctt ggaactcgcc gagtcggtcg cgacccagcg ctgtctgcag
     5941 gactgcgacg ccctcggcga tcagcgaggt gtcccagcgg gagcggtcct gctcggccag
     6001 ggggaccagg ctgccgtcgc accgggtccg cgccggtcgc cgagcgtggt gcagcagcat
     6061 caacgccagc agccccgcgg tctcctcgtc atcggtcatc gacgccaact gccgggtgag
     6121 ccggatcgcc tcggccgcca agtcgacgtc gccggtgtag ccctcgttga agaccaggta
     6181 gagcacccgt agcaccgtcg ccaggtcgcc tggctcctcg aaccgcacgt catcgaccgt
     6241 gcgtttggct cggctgatcc gctgcgccat tgtcgcttcc ggcacggggt aggccagggc
     6301 gatctgccgg gtg
//
LOCUS       DASVXZ010000230         3078 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_293476, whole genome shotgun sequence.
ACCESSION   DASVXZ010000230 DASVXZ010000000
VERSION     DASVXZ010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293476"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..249)
                     /locus_tag="VF788_04480"
     CDS             complement(<1..249)
                     /locus_tag="VF788_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8933445.1"
                     /translation="MVGRVGVRVLVVDDEAGVRRALERGLRAEGMQVVTAADGPSALR
                     AALTGGFDAVLLDIMLPGLSGYRVLERLRAAGVGTPVLL"
     gene            351..2054
                     /locus_tag="VF788_04485"
     CDS             351..2054
                     /locus_tag="VF788_04485"
                     /inference="COORDINATES: protein motif:HMM:NF014825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC-C domain-containing protein"
                     /protein_id="HEX8933446.1"
                     /translation="MATEDEVLIDVETVVRMVTDEDPLDEDGIRFVLDALTAATDSAL
                     GFLSGRIECHTAHGGVIGPGLAALRAQARSREEKAAVALVAARAAEGAGDSATARDLI
                     NDALTVRPGLEPALHDGAQYAAARGDYVTADRYLRRAEQQSPLRPGLSEAIAATDTAG
                     GAGRNSPCPCGSGRKFKVCCLRDALPALSARAQLVYALLGTYAERAPGLEMITPLIER
                     TQNAQQYAMVLLDLALFQGGLVDRFLTARGDWLRSDERELIEDWRRIPVTLYEALDVQ
                     PGTSVTLRALPDGEPIHLADKLFSQSAQRLDLFCGRVLHDGSKPRLFAVPVQVPRQRR
                     RELADLLASDLPPEKIADFLAPEPPIQFRNSDNEELHECNVTYHVPDPQQSFDQLVER
                     LTRIGEDVIAWHRHLSDGRVLNLGVIERAGEKFTLTANSPARLSYLEAQLREVAPDAV
                     ERDRRAERLSQDPGDREARTLVVDSYFVEASPDDAEAADRLSRDAEMSWLDAPRVIGN
                     LSPREAADSNDHAVLAELRCMVDDIEAILLQTQRAKQPTTGLMNPERLREALGLDKPT
                     R"
     gene            2182..>3078
                     /locus_tag="VF788_04490"
     CDS             2182..>3078
                     /locus_tag="VF788_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HEX8933447.1"
                     /translation="MKLVRAALSVAAAGAIGLGVLTIPAGAGTDPALPPVSPEDLVAS
                     VLAAKIPALGGTVAVHNALGLPALPGVAAPLTQPESTFRVWSDGQGHGRLAIPSRGGE
                     QVLIEDGTTLWRYDSSSRTATALDHGTTPGRERPPADPAQAAREMIDAVRKSSAVSVD
                     GTGTVAGRPVYQLVLTPAPTERTLLREVRVAVDSAQRVPLQLSVLANGSADPALQIGF
                     TDLTVGAQDPALFHFTPPAGVKVERSAASKHNPAPNGRPDNGAMPPGQHEGAMLRTQG
                     DGWDTVILSQLPPARPGTKSDPQ"
BASE COUNT          522 a         1088 c         1011 g          457 t
ORIGIN      
        1 gagcagtacg ggagtgccca cgccggccgc ccgcagccgt tccagcaccc ggtagccgga
       61 caagcccggc aacatgatgt ccagcaatac cgcatcgaaa ccgccggtca gcgccgcgcg
      121 cagggcactg ggcccatcgg ctgcggtgac gacctgcatt ccctcggcgc gcagcccccg
      181 ctccaacgcg cgccgaaccc cggcctcgtc atcaaccacc agaacccgca cgcccaccct
      241 ccccaccatc ctccctatcc ccacccccta accccgacat ggagacatgt cggggttatc
      301 aaccgtcccg ttgccccgac atggctccat gtcggggcta gggtgcttgg gtggctactg
      361 aggatgaggt actgatcgac gtcgagaccg ttgtgcggat ggtcaccgat gaagacccgc
      421 tggacgaaga tggcatccgg tttgtcctcg atgcgctgac cgcggcgacc gacagcgcat
      481 tgggcttcct gtccggccgg atcgagtgcc acaccgcgca cggaggtgtc atcgggccag
      541 gactcgcggc gctgcgcgcg caggctcgca gcagggagga gaaggccgcc gtcgcgctcg
      601 tcgcggcgcg ggccgccgag ggcgccgggg attccgcgac cgcccgcgac ctgatcaatg
      661 atgccttgac cgtgcgcccc ggcctggagc cggcgttgca tgacggcgcg caatacgccg
      721 cggcacgcgg ggactacgtc acagccgata ggtacctacg gcgcgctgag cagcagagcc
      781 cacttcgacc ggggctcagc gaggccatcg ccgcgaccga tactgctggg ggcgccgggc
      841 gcaacagccc gtgcccatgc gggtccggcc gtaaattcaa ggtgtgttgc ctacgcgacg
      901 cgctgcccgc gctgagcgca cgagcccagc ttgtctacgc cctgctgggc acctacgccg
      961 agcgcgctcc cgggctcgag atgatcacac cgctgatcga gcgcacccag aacgctcaac
     1021 agtacgcaat ggtcttgctg gacctcgccc tgtttcaggg cggcctggtg gataggttcc
     1081 tcaccgcccg cggtgattgg cttcgctccg acgaacgcga gctcatcgag gactggcgcc
     1141 ggatcccggt cacgctctac gaagcactcg acgtccagcc aggcacgagc gtcacgctgc
     1201 gggcactacc ggacggcgag ccgatccacc tcgccgacaa gctgttctcg cagtctgcac
     1261 agcggctgga cctgttctgc ggacgggtgc tgcatgatgg ctccaagcct cgcctgttcg
     1321 cggtgcccgt ccaggtaccc cggcagcgcc gccgcgagct ggctgatctc ctcgcatcgg
     1381 acctgccgcc ggaaaagatc gctgattttc tggctccgga accaccgatc cagttccgca
     1441 acagtgacaa cgaggaactg catgagtgca atgtcaccta ccacgtgccc gacccgcagc
     1501 agagcttcga ccaactcgtc gaacggctga cccgaatcgg ggaggatgtg atcgcctggc
     1561 accggcacct gtctgacggg cgggtactga acctcggggt gatcgaacgg gctggcgaga
     1621 agttcacgct caccgcgaac tctccggccc ggctcagcta cctcgaagcc cagctgcgcg
     1681 aggtagctcc cgacgcagtc gaacgggacc ggcgcgccga gcgcctcagc caggaccccg
     1741 gtgaccgcga agcccgcaca ctcgtcgtgg acagctactt cgtcgaggca agccccgacg
     1801 atgccgaagc tgccgaccgg ttgagccggg atgccgaaat gagctggctc gacgctcccc
     1861 gggtgatcgg taatctgagc ccgcgggaag ccgccgactc caacgatcac gctgtcctgg
     1921 cggagctgcg gtgcatggtc gatgacatcg aagcgatcct gttgcaaact cagcgagcga
     1981 agcagccgac gacaggcctg atgaacccgg agcgccttcg cgaggcgctg ggtctggaca
     2041 agcccacccg gtgagtggtc tggtctgggt gcagtttccg aagcgtcgtg agcttgctgt
     2101 ccaacgctga tcgggtctca gagctttctc agccggtgcg gggcagcatc gaggtcgagc
     2161 gcctcacggc aggaggaagc aatgaagcta gtgagggcag cgctgtcggt cgcggcggcc
     2221 ggggcgatcg gcctcggcgt gctgacgatt cccgcaggcg ccgggacgga tccagcgctg
     2281 cctccggtgt ccccggagga cttggtggcc tcggtgctcg ccgcgaagat ccctgcgctc
     2341 ggcggcacag tggcggtgca caacgcgctg ggactgcccg cgctgcccgg ggttgccgcc
     2401 ccgctgactc agccggagag cactttccgg gtctggtctg acgggcaggg tcacggccgg
     2461 ttggcaatcc cctcgcgcgg cggtgagcag gtactgatcg aggacggcac gacgctgtgg
     2521 cgctacgact cctcgtcgcg caccgcgacc gcgctggacc acggcaccac cccgggacgc
     2581 gagcgacccc cggccgaccc cgctcaggcg gctcgggaga tgatcgatgc cgtgcgcaag
     2641 agcagcgcgg tgagtgtgga cggtaccggc accgtcgccg ggcgtcccgt ctaccagctt
     2701 gtgctcacgc ccgcgccgac cgagcgaacc ctcctgcgtg aagtgcgcgt ggcggtcgac
     2761 tcggctcaac gggtgccgtt gcagctcagc gtcctggcca acggatccgc cgatccggcg
     2821 ctgcagatcg gcttcactga cctcaccgtc ggcgcgcagg atcccgcgct attccacttc
     2881 accccgcccg cgggggtcaa agtcgagcga tccgctgcct cgaaacacaa cccggccccg
     2941 aacgggcggc cggacaacgg cgcaatgcca ccgggccagc atgagggcgc catgctccgc
     3001 actcagggtg acgggtggga cactgtgata ctcagccagc tcccacctgc acgcccggga
     3061 acaaaatccg atccgcaa
//
LOCUS       DASVXZ010000231         6025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_831731, whole genome shotgun sequence.
ACCESSION   DASVXZ010000231 DASVXZ010000000
VERSION     DASVXZ010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6025
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_831731"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(310..675)
                     /locus_tag="VF788_04495"
     CDS             complement(310..675)
                     /locus_tag="VF788_04495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933448.1"
                     /translation="MSEAENQRRNVLDEVLRLGAGFKEGERAWVLDALSALVPHLARW
                     DPDDLDVEISAKDRDGKEQHITLRVDLPGYSPLVAVVADRNLNRALAEAKHELIRQIE
                     DHKSMREPKHNRHLRKKTT"
     gene            1223..1657
                     /locus_tag="VF788_04500"
     CDS             1223..1657
                     /locus_tag="VF788_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX8933449.1"
                     /translation="MTAAAPFDPHALLAQSRLGVLATIKSDGRPQLSPVMPFYDRAAG
                     QINVSMTQGRAKTANLRRDPRATLEVTSPDGKAWATAEGIATLTGPGTDPHGVEVQAL
                     VDYYRQASGEHPDWDEYRSAMVSDRRVLMTMTVDKVYGEKIG"
     gene            complement(1682..2266)
                     /locus_tag="VF788_04505"
     CDS             complement(1682..2266)
                     /locus_tag="VF788_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933450.1"
                     /translation="MDRDSVLSRRDVAGLVVTRVGPVASTADPVMPWVVLDGAGTPVE
                     PVVQFLRDLLACGSSPSSCRSYGFDLLRWFLAAVDVEWHRAQRGEVRDFVLWLGMCHN
                     PARDRHRPDAPAQGAVNSRTGKTSLRAGYARATINHAVSVMSAFYDFHLLSGQGPVVS
                     PVPPQSRDGRRLQGHHNPLEPFRLHRSLIPGPQI"
     gene            complement(2363..2581)
                     /locus_tag="VF788_04510"
     CDS             complement(2363..2581)
                     /locus_tag="VF788_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933451.1"
                     /translation="MISLHQSPDLGGEFFPHAAQAIKLVRRRRSLTSGKWKTVTVYAI
                     TSLTAFQADPVLLARWIREHWAIENQLH"
     gene            complement(2806..3212)
                     /locus_tag="VF788_04515"
                     /pseudo
     CDS             complement(2806..3212)
                     /locus_tag="VF788_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
     gene            4480..4908
                     /locus_tag="VF788_04520"
     CDS             4480..4908
                     /locus_tag="VF788_04520"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933452.1"
                     /translation="MSTHCCSSRLYVLFVVEHATRRAHVLGVTANPSGAWVAQQTRNF
                     LMDLGDRAAEFRFLIRDRDSKFTSVFDAIFASEGMRILRTPVRAPQANAIAERWIGTV
                     RRELLDRILIINRRHLTAVLAEYVAHFNHHRPHRALRGCW"
     gene            complement(5005..5823)
                     /locus_tag="VF788_04525"
                     /pseudo
     CDS             complement(5005..5823)
                     /locus_tag="VF788_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336521.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT         1118 a         2024 c         1843 g         1040 t
ORIGIN      
        1 ccagaccagc aacaaccccc tccccctcac ccgtggccag ccccaccaga catgccatca
       61 aaagaacaac gcatcccaag ccgggccgct gctcaccaac accgcacgga ccctcatctg
      121 atcccaccca tcacacaccg cagcggcggt gcacgtaagc gcgcagttcc ggacgggata
      181 acccagacca gagattgacc cctcaacggc gaccatctgg caggctacaa acgctgaccg
      241 gacagtcgag caagattgat gagcagcgac gctgcgggcg agcgccggga gacggattcg
      301 gcagctctct taggtcgtct ttttcctgag atgtcgattg tgcttgggtt cccgcatcga
      361 cttgtgatcc tcgatctgtc ggatcagctc gtgcttcgcc tcggcgagtg cccggttcag
      421 attccggtcg gcgaccacag ccaccagtgg cgagtagccg ggtaggtcga cccgcagggt
      481 gatgtgctgc tctttgccgt cacggtcctt cgccgagatc tcgacgtcga gatcatcggg
      541 atcccagcgc gccaggtgcg gcacaagcgc cgacaacgca tccagcaccc atgcccgctc
      601 accctccttg aacccggcgc ccaagcgcag cacctcgtcc aggacgttgc gtcgctggtt
      661 ctccgcctcg ctcaccgcag cctcgcctct ccggagtctc gtgcggcagt agaccctccg
      721 atactcggca gcgtctgccg ccgaggccgt agggccatga gttccgaagc aggccgcgtc
      781 cacgctagct cgtcgccggt aggctctacg gcgcgcggcg tagtcgatcc gctggtgaca
      841 aagctcacct cgccccagga ccagccgatg tacccgctta acctccccag aaaatgagac
      901 gacccaacac aaaacactag gcgaggtaac cgggatctgc acagcgttag tgctggtcaa
      961 cagtggcgga agcggaggga ttcgaacccc cggaccctcg cgggtcgctc gctttcaagg
     1021 tcgtcgaccc ggcgatcagc ggtgaccatc tcagctgtat gggcaggtcg tcggcccggg
     1081 cccggtcact cccgggcctt actaaccgcg agcgaatgca accacaaatg ccaccactgc
     1141 atcccgcaag cacccacgat cgcgtgtgat ctctgccggc agcatcggaa tagcgggcct
     1201 cccccagggg ttagctcccg acatgaccgc cgccgcacca ttcgatcccc acgcactgct
     1261 agcgcaaagc cgactcggcg tgctcgcgac gatcaaatcc gacggacgtc cccagctctc
     1321 gccggtgatg ccgttctacg accgggcggc aggccagatc aatgtctcga tgacccaggg
     1381 gcgcgccaag acggcgaacc tgcgtcggga cccacgagcg actctagagg tgaccagccc
     1441 cgacggtaag gcatgggcta ccgccgaagg catcgcaaca ctcaccggac ccggaaccga
     1501 tccgcacgga gtcgaagtcc aagctctcgt cgactactac cgccaagcct ccggcgagca
     1561 tccagactgg gacgagtacc gctccgccat ggtctcagac cgcagggtgc tcatgacgat
     1621 gacggtcgac aaggtctacg gcgagaagat cggctaatcc tcacggccgc cggtgatgac
     1681 ctcagatttg aggtccgggt atcaggctcc ggtgcaaccg gaacggctca agcggattgt
     1741 gatgcccctg caaccggcgc ccgtcgcggg actgcggcgg caccggcgag accaccggcc
     1801 cctgcccact caacaggtgg aagtcgtaga aagcggacat caccgacacc gcatgattga
     1861 tcgtcgcgcg agcgtaaccc gcccgcagag acgtcttgcc cgtccgagag ttcaccgcgc
     1921 cttgcgcggg cgcgtccggc cggtgacgat cccgcgcagg gttgtgacac atccctagcc
     1981 acaacacgaa atcgcggacc tcgccccgct gcgcacgatg ccactcgacg tccaccgcgg
     2041 ccaggaacca acgcaacagg tcgaagccgt aggaacggca cgacgacggg ctgctcccgc
     2101 aggccagcag atcacgcaag aactgcacca ccggttcgac cggcgtcccc gcaccgtcca
     2161 agaccaccca gggcatcacc ggatcagcgg tagaagccac tggcccgacc cgcgtcacaa
     2221 ccaacccggc cacatcccgc cgactcaaca ccgagtcccg atccacaaca tttctgcccc
     2281 ggggcggtct tcaccccgga acgcaccctt gccctgccgc ccgcaccgaa cctgcagacg
     2341 cgccggtagt gcggtcaaca tgtcagtgca gttggttctc gatcgcccaa tgctcgcgaa
     2401 tccagcgggc gagcagaacc gggtcagcct ggaatgcggt caggctggtg atcgcgtaca
     2461 cggtcacggt cttccacttc ccgctggtca gcgaccggcg tcggcggaca agtttgatgg
     2521 cttgagcggc gtgcgggaag aactccccgc caaggtcggg ggactgatgc aggctgatca
     2581 cgccgatcgt gcgagtctcg gcgctgccgt ggccgcgggc ccgctcacgg gctgcaactc
     2641 cgatctgcgc ccacggcagc gtgcggagcc ggcgcagcag cgtcgggtgg tcgccttgac
     2701 cgtcatcacg tagtgggtgc cgcgttcgcg caggtagcgg gcgtgccggc gttgttgcat
     2761 ttggcgaagc cggggcaggc gagaccggtt tgatcctcgg gttggtcaga tcgccagagc
     2821 cagctcgtcg aaggcggcca ccacccgcaa ggtcatcggt tcgtcaacgc cgagttcgta
     2881 gtggccgcga cggatgttct ggatgaacgc gtgcccggcg atgatgatcc tggctgactg
     2941 atctgttttc atgctgcgca tcggtcgcag gcgacccttg agcgcccgtg atcggcttcc
     3001 acccggttgt tggcgtaggc ctgcctacag tgccacgcac tcgcagccag ttcaacaacg
     3061 tgcggataca ccgccgcctt gtccgtggtg acctctaccg ggatgacttt cgtggtggac
     3121 aacgcacggg tgaagaaaca ccgagccgca ccagcatctc gccgcgggga cccatacacg
     3181 tcgatgacct gcccgaactg atcgatcgcc cgggctcgaa gctgtatccc gcttcccaca
     3241 ggagggggct acttgctcgt tggcaagggt cggcaattct gtcgggtgta ggagctctgc
     3301 tcggcttcca ggataaaggg gatttctacc ccggtagacc cgcggcggac gaccgctgac
     3361 atgaccgccg cgctgggttc actcccggca ggggaatccg accccggacc ggcgtgcggg
     3421 gtgaggcacc agcaccccgc cgaggcacat gcctcacccc tcataccgga ctcgtcctcg
     3481 tctggacctg cggcgaggca gacgacctcg ggaaggcaga ccgtcgccgc tagcagaaat
     3541 ctggtcggtt tcagcggtcc ggataggggg tgccctctgg ctgcctcagg ttccagttcg
     3601 tctgatgtgg cgcggtgcag gtgacgttga acgtggatag agaagaacag ctgtggctac
     3661 ggtgaggtat atgccgtagt gcttttcaat gagagcgggg acgtcttgct tagtgcattg
     3721 ccaaatggcg atgttgtgtt ccatgtcatc ggcacggttt tgcagcaagc cggcgagggc
     3781 gctggcgtgt tcaagatcgt tgcgttcgct gagcgtgtgg gctgctgctc tcaatgtgtc
     3841 tggggcattt atgtcgccat gtctgtctcg gctgagcggt gtctgttcag tcggtagcgg
     3901 catgcgcggg cccttgggtg atcaatctga taccgacagt attggtagat catgattctc
     3961 gtgagaagct gctctaaagt aaaacctgac agccatggta tgttaatata tagtgtcgtg
     4021 ctcgaaaagg gaacctcctc ccaactcctc agcgcatact ccgtacacgt cgaacgtaca
     4081 tgcaaacggt tcgtgcatcc tcacatgcat acatctctgg taagcgccga tggatggact
     4141 atccgatggc acaagcccac agcggtccca ggctggcgcc gtatcccgtt agatcctttc
     4201 tgcgtgatag ccgcggtcgg tatttgttgt attctggcgc ggtcttcgcg attttgagat
     4261 cgccgagtaa cccgagcagt gcaacgacca gcgtggcggc gagctgctgg cctaaaccag
     4321 gtcgccggtc tctccggtcc accgagcaag gtgggcgcgg gcgtccaggg tgtaccggtg
     4381 gttggggccg aggatccgct cgtcgtcctc gaccaactct gcggccacgg caattcctac
     4441 acgtgcaagc ccggggcatt ctcgccaccg acttcttctg tgtcgacaca ctgctgctcc
     4501 agccggttgt acgtgctgtt cgtggtggaa cacgcgaccc gccgcgccca cgtcctggga
     4561 gtcaccgcga accccagtgg cgcctgggtg gcccaacaga cacgcaactt cctaatggac
     4621 ctcggcgacc gcgcagccga gttcaggttc ttgattcggg accgcgacag caagttcacc
     4681 agcgtcttcg atgccatctt cgccagcgag ggtatgcgca tcctgcgcac cccggtgcgg
     4741 gcacctcaag cgaacgcgat cgccgaacga tggatcggca ctgtccgccg ggaactgctg
     4801 gaccggatcc tgatcatcaa ccgccgccat ctcacggcag tactggccga gtacgtggcg
     4861 cactttaacc accatcgccc gcaccgcgcc ctaagaggct gttggtaaat agtcacgctg
     4921 attatgatct tgttgttcgg gtgctgaggc tacggtgcgg gggttgcccc atcggggatg
     4981 aggcggtgcg ccggccgtgg tgcgggccag ttgccgggtc atgatcgcga cggcggccca
     5041 gagcaccatc gctttgtggt gttcggggcg tcgttcgtag tcgcggacca ggcggcggta
     5101 gcgcattagc cagccgaaag tccgttccac gacccaccgg cggggcagca cgacgaatct
     5161 ggtggtgtcg tcactgcgtt tgatgatggt gagagtcagg gccagcacgg tgtgagccca
     5221 gcgcaccagg cgaccggagt atccgccgtc ggcccagacc agggcgatcg tggagaaccg
     5281 ctcgcgcagc acggccagca gccgacacgc cccatcacga tcctggactg aggcggtggt
     5341 gacgaccacg gtcaggacta ggccgagagt gtccacggcg aggtgccgtt tgcggccgtt
     5401 gatcctcttg ccgctatcga aacccctgct ggtagccccg accgtgtccg ccgccttcac
     5461 cgattgggag tcaatcgatc cggcggtggg cagatcggcg gccgtgcgcc acccgcagcc
     5521 gcccgcgcag ccgctcgacc agcccttggg gcaggccgcg ggcgttccag cgctcgaaga
     5581 aggcatacac cgcctgccag ggcgggaagt ccactggcag tgcccgccac tcgatgccat
     5641 aacgggtcac atacccgatc gcgtccagca ccgcccgcag agcatgctcc atcggccgcc
     5701 ccccgggcca cggcgcagct gcgccatcac cgcccgagcc tccggggcga gcaacgccca
     5761 ctgggcatcg gtcatatccg agggataacg cggcacacgt tcctgacacg cgcatcccga
     5821 cacacggcaa ctggccttcg ggccctcgac aaggtagaca gacatccccg ggcttctggt
     5881 cggtcgggta ggtggcactc cccagctacc agcagcccgc tctcataccc ggcgcgacac
     5941 gccaccgtga tcaaatcgct acccaccctc accacaggcc aactcagcca acatcatttg
     6001 tcaacagatt ttgatgccgc tggtg
//
LOCUS       DASVXZ010000232         5944 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_293487, whole genome shotgun sequence.
ACCESSION   DASVXZ010000232 DASVXZ010000000
VERSION     DASVXZ010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5944
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293487"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..918
                     /locus_tag="VF788_04530"
     CDS             <1..918
                     /locus_tag="VF788_04530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933453.1"
                     /translation="PSMRRRHDPEVRSVARRLVRSIGVAGWPAAAMYVLLALAGTVRG
                     GVFVVQLTHTILFSLSFVSARAVSMAVLPKLAHAAHCDDRAVFGSQWRQGLSYALIGS
                     LPLLVLLGVNSGPTANLLAAGQLRHAALIGPLTTCMAVAAVAQLIGGVHDIGRQALFA
                     RLDDRIPRRASEVACGVMVIAAAVGLLLPADGSRLVWLVAANLAGELAAAGIVLTRLR
                     RAIRPELFLERRSLVAALVATLAIVPLAGAVRWTEQIEASGRLANLTLLALGAAVALA
                     VYALVLRTVTRRISGRYLTVNSSHSPIRW"
     gene            1058..1519
                     /locus_tag="VF788_04535"
     CDS             1058..1519
                     /locus_tag="VF788_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX8933454.1"
                     /translation="MTSVDQTALADELMTTMAALRRLIRRRVPSEAPGLPLRGAHVEL
                     LQVIKKHPGIGIASAGRALHLAANSVSTLVNQLIDIGMLVRQTAPDDRRAARLWLTDT
                     ATQRLAAFRQVRIDLVADGVARLSRADRQALTEALPALRALLAVLDVEDGR"
     gene            complement(1560..5411)
                     /locus_tag="VF788_04540"
     CDS             complement(1560..5411)
                     /locus_tag="VF788_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933455.1"
                     /translation="MSTPGWIRRLAGYLLNHRRNVALALTGALLGSACQTLVPLIARQ
                     IVDGVIVRHDSPLWPWLALLVIVAVATFGFTYLRRYRGGQVGLQVQYDLRNAMHDHLQ
                     TLDLDNLGRMPTGQLIARANSDSMLVQGLLNFFPIMSGNVLLMMLSLGVMFCLSPLLA
                     IISLIVAPVLVVISYRMRWRVFPATWDGQQREGDLAQIVDEDVNGVRVVKAFGQEDRE
                     LDRIVEAAKSLYGARMRAVRLQACYQPLLKAIPSIGQVAILAFGGWLALRHEITLGTF
                     LAFSTYVAQFVAPARQFAGVITIAQQARAGVERIFQLLDLPPAIADAPEAVELAQLRG
                     EITFSDVHFGYGEGPPVLNGFDLRIAAGERVAIVGASGSGKSTVAMLVSRFRDPDSGT
                     VLVDGHDLRTVTVKSLRRQVGVAFEESFLFSDTARANISYGRPNATDGEIEEAARIAG
                     AHGFIQELPRGYDTMVGERGLTLSGGQRQRIALARAILADPRILILDDATSAIDAKVE
                     QAVHDGLRNVLANRTTLLIAHRSSTLHLADRIVVLEQGRAVEQGTHEDLVARSAVYRT
                     LVSGLEESGEQICDQIETLAMLPTGLDGRTASAWAGDQDATNARHSAARMIGAPSIGP
                     GLGGGSGWRRNLAPTPELLARVAALPPVRDFPTVDVARESRPDRDFRLVGLLCEFRRP
                     LSVGLLLVILDALAGLAGPLLVKEGVDNGVTAGSQTVLFLASTIFLVVTLVNLIDQVG
                     ETFVTGRTAERIMLSLRIRIWAQLQRLSLDYYEREMAGRIMTRMTTDVDQFESLIENG
                     LLSALVSLVTFAGVGVALILINTDLGLCTLTVVVPLVIGTVIFRRKAARLYDLARERI
                     AIVNADFQESLSGVRESQAFTHENETIKRFHRLGYDYLATRVAAQRLVAIYFPFVQFL
                     AAGADAIVLGVGAGLIASGQLTTGALIAFMLYIDMFFAPIQQLSQVFDSWQQTRVSVG
                     RTAQLMRLDTLTPLAERPEPAVRFRGELALEGVHFSYPAVAAWPRTESAFTGERRGPA
                     DSRLPRSTDAQPAKPPEALRGINLHIAAGETVAIVGQTGAGKSTVMKLLARFYDPDEG
                     CVRTDGCDLRSLDLRSFRRQLGYVPQESFLFSGTIRDNIAYGRPESSDAEVEASARAV
                     GAHEFIAALPRGYRHEITERGRSLSAGQRQLIALARAEHVEPTLLLLDEATSSLDLAT
                     EARVAEAMRQIAHNRTTIVIAHRLQTARSADRIVVLDRGQIAEVGSHEQLVATDGKYA
                     SMWRAFELVGRSRPRAERTVI"
     gene            complement(5414..>5944)
                     /locus_tag="VF788_04545"
     CDS             complement(5414..>5944)
                     /locus_tag="VF788_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003101951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933456.1"
                     /translation="GIQIIWERDAGVLTKLLVTPTPRIALVTGKAFAASIRALVQALV
                     ILVLAAALGVALTDNPLKILAMAAIVSLGSSFFCCLSITIAGLVLTHDRLMGIGQAIT
                     MPLFFGSSALYPVNLMPGWLKEFNRVNPLGYEVDALRGLLIGTPADFDLDFAVLILAS
                     AVMISIASALLGRLAR"
BASE COUNT         1083 a         1840 c         1994 g         1027 t
ORIGIN      
        1 ccctcgatgc gaagaaggca cgaccccgag gtccgctcag tcgccaggcg gctggtgcgt
       61 tcgatcggcg tggcgggctg gccggccgcg gcgatgtacg tcctgctcgc tctggccggc
      121 acggtacgcg gtggcgtatt cgtggtgcag ctgacccaca ccatcctctt ctccctgtcg
      181 ttcgtcagcg cccgggcggt gtcgatggca gtgcttccaa agctggcgca cgccgcccac
      241 tgcgacgacc gggcggtgtt cggctcacaa tggcggcagg gtctgtccta cgccctgatc
      301 ggcagcctgc cactgctggt cctgctcggg gtgaactcag gcccgaccgc gaacctgctg
      361 gcggcgggac agttgcgaca cgccgccttg atcggcccgc tcaccacctg catggcagta
      421 gcggcggtag ctcagctgat cggtggtgta cacgacatcg gtcgccaggc gctgttcgcg
      481 cgattggacg atcgcatccc acgccgggcg agcgaggtgg cctgcggtgt gatggttatt
      541 gccgcagctg tgggcctgct cctgcccgca gatggttccc gcctggtgtg gctggtggcg
      601 gcgaacctag ccggtgagct ggctgctgcc gggatagtgt taacccggct acgacgggcg
      661 atccggcccg aactgttcct cgaacgccga tccctagtcg cagctctagt agccaccctc
      721 gccatcgtgc cactagccgg cgcggtgcgg tggaccgaac aaatcgaggc cagtggccgg
      781 ctcgccaact tgacgctcct tgcactaggc gctgccgtgg cactcgcggt ctatgccctg
      841 gtgctccgaa ccgtgactcg acggatcagc gggcgatacc taactgtgaa ctcatcccat
      901 tcgcctatca ggtggtgatc tgtccgcaaa tctgggcgac tgtggcccgg accagggagc
      961 tgccacacga tccgggtaga agtcgttaca caacgctact atacgatggg taacaatgga
     1021 cccgagtggt gctcctacta agagctatcg tcatcctgtg acaagcgttg atcagactgc
     1081 gctggccgac gagctgatga caacgatggc cgcactgaga cgcctgatac gaaggagggt
     1141 gccatcagaa gcacctgggc tcccgttacg aggcgcgcat gtagaactac tgcaagttat
     1201 caagaagcat ccaggcatcg ggatcgcatc ggcgggacgc gctctgcacc tggctgccaa
     1261 ctcagtgagc acattggtca accaactcat cgacatcggg atgctggtgc gtcagactgc
     1321 gccggacgat cgtcgtgctg cacggttgtg gttgaccgac acagctacgc agcgattagc
     1381 ggcctttcgt caggtccgca tcgacctcgt cgcggacggc gtggcgcggc tctcgcgcgc
     1441 cgatcgccag gccctcactg aggcacttcc tgcgctacgc gcgttgctgg cggtcctcga
     1501 cgtggaggac gggcgatgac ttgggtcgct cgcttgcggg gataccgagc gcgcgaggct
     1561 tagatgaccg tgcgctcggc gcggggacgc gatctaccga cgagttcgaa cgccctccac
     1621 atcgatgcgt acttcccgtc agtagcaacc agttgctcgt gcgatccgac ttcggcgatc
     1681 tgacccctgt cgagcacgac gatccgatca gccgacctcg cggtctgcag gcggtgcgcg
     1741 atgacaatgg tggtgcggtt gtgcgcaatc tgccgcatcg cttccgctac tcgcgcctcg
     1801 gtggcgaggt ctagactgga ggtcgcctcg tcgagcagca acagtgtggg ctcgacgtgt
     1861 tcggcgcggg ccaaggcgat cagctgccgt tgcccagccg acagcgaacg gccgcgctcc
     1921 gttatttcgt gacggtagcc cctgggcaga gcggcgatga actcgtgcgc gccgaccgca
     1981 cgggcggacg cctccacctc ggcgtcgctg gactcgggtc gaccgtaggc gatgttgtcc
     2041 cggatggtcc cgctgaacag gaagctttcc tgcgggacgt agccgagttg gcggcggaac
     2101 gagcgtaggt ccagcgagcg caggtcgcag ccgtccgttc ggacgcagcc ttcatcgggg
     2161 tcgtagaagc gggcgagcag tttcatcacg gtcgacttgc ccgcaccggt ctgccccacg
     2221 atcgccaccg tctctcccgc ggcaatgtgt aggttgatgc cgcgcagtgc ctcgggtggc
     2281 ttagcgggct gggcgtcggt ggatcgcggg agacgggaat cggccgggcc gcgccgctca
     2341 ccggtgaatg cgctctccgt tctcggccag gcggccaccg cgggatagga gaaatgcacg
     2401 ccttcgagtg cgagttcgcc gcggaatcgg acggcaggct cgggtctctc ggcgagcggt
     2461 gtcagcgtgt ccagccgcat cagttgagcg gtccggccga ccgagactcg ggtctgttgc
     2521 caggagtcga agacctggga gagctgctgg atcggcgcga agaacatgtc gatgtaaagc
     2581 atgaaggcga tcagcgcgcc ggtagtgagc tgccctgagg cgatcagtcc tgctccgacg
     2641 ccgagaacga tcgcgtccgc gccggcggcg agaaactgca cgaatgggaa gtaaatagca
     2701 acgagccgct gcgcggcgac gcgagtcgcg agatagtcgt agccgagccg gtggaatcgt
     2761 ttgatcgtct cgttctcatg ggtgaacgcc tgggattcgc gcaccccgga caggctctcc
     2821 tgaaagtccg cgttgacgat ggcgatccgt tccctcgcga gatcgtaaag gcgggccgcc
     2881 ttgcggcgaa agatcaccgt gccgataacg agcgggacca cgacggtgag cgtgcacagg
     2941 ccgagatcgg tgttgatcag tatgagtgcg acgccaactc ccgcgaaagt gaccagcgag
     3001 accagggccg agagcaaccc gttctcgatg agcgattcga actggtccac gtcggtcgtc
     3061 atccgggtca tgatccgacc ggccatctcg cgctcgtagt agtccagcga gaggcgttgc
     3121 agctgcgccc agatccggat ccgcagcgag agcatgatcc gctcggcggt gcggccggtg
     3181 acgaaggtct cgccgacctg gtcgatcagg ttgaccaagg tgacgaccag gaagatcgtg
     3241 gaggccagga agagcacggt ctgggaaccg gccgtcactc cattgtcgac gccctccttg
     3301 accagcagcg gaccggccag cccggccagc gcgtcgagga ttaccagcaa cagcccgacc
     3361 gacagcggcc ggcgaaattc gcataacaac ccgaccagcc ggaaatcccg atcggggcgc
     3421 gattcccggg cgacgtccac ggtcgggaag tcccggaccg gggggagtgc agcgacccgg
     3481 gccagcagct cgggagttgg agcgaggttg cgacgccaac cgcttccccc gccgaggccc
     3541 ggaccgatac tcggcgcgcc gatcatgcgc gcagcagaat ggcgggcgtt cgtggcgtct
     3601 tggtcgccgg cccatgccga ggcggtgcgg ccgtcgagac cagtgggcag catcgcgagt
     3661 gtctcgatct ggtcgcagat ctgttcccca ctctcctcaa gcccggagac cagagtgcgg
     3721 tagacggcgc tgcgggcgac gaggtcctcg tgcgtgccct gctctacggc tcgcccctgc
     3781 tcaagcacga caatgcgatc agccaggtgc aacgtggagc tgcggtgtgc gatgaggagc
     3841 gtcgtccgat tcgccagtac attccgcagg ccgtcgtgca cggcctgctc caccttggcg
     3901 tcgatggcgc tggtggcatc gtcgaggatc aggatccgcg gatcagccag gatggccctg
     3961 gccaacgcga tgcgttggcg ctgtccgccg gacaaggtaa ggccacgctc gcccaccatc
     4021 gtgtcgtagc cgcgcggaag ctcctggatg aaaccgtgcg ccccggcgat ccgagcggct
     4081 tcctcgatct ctccgtcggt cgcgttcggg cggccataac tgatattcgc ccgtgccgtg
     4141 tcggagaaca ggaagctctc ttcgaaggcc acgccgacct ggcggcgcag ggatttcaca
     4201 gtcacggtgc gcaggtcgtg tccatcgacg agaacggtgc cggagtccgg atcacggaat
     4261 cgggacacca gcatcgccac cgtcgatttc ccactgccgc tcgccccgac gatcgcgacc
     4321 cgttcaccgg ctgcgatacg caggtcgaaa ccgttcaaca ccggggggcc ctcgccgtaa
     4381 ccgaaatgca catcggagaa ggtgatctca ccacgcagct gggccagttc cactgcttcc
     4441 ggggcgtcag cgatggccgg tggaaggtca agaagctgga agatgcgctc caccccggcc
     4501 cttgcctgct gggcgatggt gatgacaccg gcaaactgcc tggctggcgc gacgaactgg
     4561 gcgacataag tggagaacgc caggaacgtg ccgagcgtga tctcgtggcg caaagccagc
     4621 caaccgccga aggccaagat ggcaacctga ccgatcgaag gaattgcctt gagcaatggc
     4681 tggtaacaag cctgaagccg gaccgcgcgc atgcgcgcgc cgtaaagcga cttggcggcc
     4741 tcaacgatac ggtcaagttc ccgatcctct tggccaaagg ctttcaccac gcgcacgcca
     4801 ttgacgtcct cgtccactat ctgggcgagg tcgccttcac gttgctggcc gtcccaggtc
     4861 gccgggaaga ctcgccagcg catccggtag gagattacga cgagcactgg cgcgacaatg
     4921 aggctgatga tggccagcag tggggacagg cagaacatga ccccgagcga gagcatcatg
     4981 agcagcacgt tgccgctcat gatgggaaag aagttgagca gaccctgtac gagcatggag
     5041 tcggaattcg ccctggcgat gagctggccg gttggcatcc gaccgaggtt gtcaaggtcc
     5101 aacgtctgca ggtggtcgtg catggcgttg cgcaggtcgt actggacttg caagccgacc
     5161 tgaccacccc ggtagcggcg taggtaggta aagccgaatg tggcgaccgc gactatgacc
     5221 agcagcgcca gccacggcca cagcggcgag tcatggcgga caataacccc gtcgacgatc
     5281 tgccgggcga tcagtggtac cagtgtctgg caggcgctgc cgagtaatgc gccggtgagc
     5341 gcgagtgcca cattgcgccg gtggttgagc agataaccgg ccagccgccg gatccatccc
     5401 ggcgtgctca tgctcagcgg gccagccgac cgagtagggc ggaggcaatg ctgatcatga
     5461 ctgccgaggc caggatcagg acggcgaaat ctaggtcgaa gtctgcggga gtgccgataa
     5521 ggaggcctct cagtgcgtcg acctcgtatc cgagtgggtt taccctgttg aactctttca
     5581 accagccggg cataaggttt accgggtaga gggcactgga tccaaagaac agcggcatgg
     5641 tgatggcctg gccgatgccc atgagccggt cgtgcgtgag cactaatccg gcgattgtga
     5701 tcgataggca gcagaagaag cttgagccga gacttactat tgccgccatc gccaatatct
     5761 taagggggtt atcagttagc gccacgccga gcgcggcggc tagaacgagg atgaccaggg
     5821 cttgaaccag ggcgcgtatt gaggcggcga aggctttgcc tgtgaccaga gcgattcgcg
     5881 gtgttggggt gaccagtagt ttggtcagta ctccggcgtc gcgttcccag atgatctgga
     5941 tgcc
//
LOCUS       DASVXZ010000233         2319 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_293553, whole genome shotgun sequence.
ACCESSION   DASVXZ010000233 DASVXZ010000000
VERSION     DASVXZ010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293553"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(643..1734)
                     /locus_tag="VF788_04550"
                     /pseudo
     CDS             complement(643..1734)
                     /locus_tag="VF788_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014327616.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            1852..>2319
                     /locus_tag="VF788_04555"
     CDS             1852..>2319
                     /locus_tag="VF788_04555"
                     /inference="COORDINATES: protein motif:HMM:NF033587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HEX8933457.1"
                     /translation="MWLYHTFGLSFHDAELILAERGITVTYETVRQWCLTFGADFARR
                     LRRRRPKPGDTWHMDEVFLRINGELHYLWRAVDQHGVVLDILVQERRNATAAKRFFRH
                     LLSGMRYKPKRIVTDGLRSYGVAHREVLPEVRHRTSRYLNNRAENSHRPTRRRE"
BASE COUNT          361 a          773 c          782 g          403 t
ORIGIN      
        1 gcagcacgat gttgttcggg cattgccaac ttgatgctct ctacccggaa cgaattggct
       61 ggggcaaact gggccgatgt cggcagacct caccacctac cctggccacc ggttcccggc
      121 cgaggtgatc agccgtcatg tccgttttca agagtcttgg acgttatagg ccgttataat
      181 ccacccagag tccgttggtc tggttgacct tgctgatgca ggcatgcgtg gtggagggcg
      241 ggcactgagc gacggttgat catgctgtga cacgcgggtt ggttaccgca agaccatgtt
      301 tcgtcgcggg cctgcctctg tctacgcgcg gaagtcgtgt tccaggctga tgccgagggt
      361 tgccctgacc gggtccgccc tccgccgcgc atgccgatgg cgcccactgc cttgatcagt
      421 cgggcgagcg gtgcgccgct gtcattcggt catggtcttt ccggccgatg cggcgagacc
      481 cgtttgcccc ggtcgttcat aggtcgctcg cgcgcgacgt gttgcgcgtt tcagcggctg
      541 gcggcgtggc gcgcgcgagc cgcccgcgga cccgcctgga caaaccgctt gaggcacact
      601 cgtgtccact gcggtctcgt ggggtggatc cgacgtggtg caagccgtgg cccagacaaa
      661 ccccgccaac tcgcgggcga tggcggtgac gacaacctgc ttcagcttgc cccgggccat
      721 catttgtcga tagcgctggc acagccgggt ctgcgccctc caggcgatct cgcgcacagc
      781 ctctggcacg gcatcgaccg cggccagctt gtggcgggtg atgcggggcg ggaagcggta
      841 gcagtgcgca gcctcgacca ggagggtgcg ggcgtgactg tcaccggcct tggtgacggc
      901 gccgatgcgg cgcttgcagc cggaggagtg ctcggacggc accaagccga gataggccat
      961 gaggtcgggc gctgaggcaa agcgcgccgg gtcccccatg gccgccgcca gaccggcgct
     1021 ggcgatcaca tccagaccgc gcagcgccgc aaggttgcgc accaggggac acagcgacca
     1081 ggtcgggatt tgtgcgcgtg gacagccctc aacgcgatcg cgccgctgtt cgctcaggcg
     1141 caccgcctcg atactctcct ccagcacgat ctgctgcgcc ggctgcgcaa agcgctgctc
     1201 agccagccag cgtcggtgcg ccttggtcca ggccttgcgg ccatggggat agacccgttc
     1261 gtgacggagc agaaacgcgc ccagctgttg gcgggcgctc cgcaccgccc gcacggccgc
     1321 caaacgggcg cggatcaggt cgcgcattgc ctcgtgcgcc gcatcgggca cccagaccgc
     1381 ggtcagtagg ccaccccggt gcaagaccgc caggttggcg gcgtcacgct tgtcgttctt
     1441 ctgtcgatcg ccgcgtttgc gcggcatcat cgagggcgcg accaccatgc attcctcccc
     1501 cagccgcgtg agggtgcggt ggacaccgta accgcagggg ccggcttcgt agcaaaaccg
     1561 catgggcccg ctgcccgctt gccggaggcg tttgaccagt ttctccagcg ccgcagtggt
     1621 gttggggcag gtgccatacg gtgtggccgc cccactgtca cctgtggcgg tgaccgcgac
     1681 ggcaatcgtg tccttatgca cgtccatgcc gataaaccgt gtgggctgtt ccacgacccg
     1741 tctcctgtgc ctgaggctcc acgccagacc gtccggcgtg accctcgatc atcgacacat
     1801 gacgagacgg gtcacccctt cagggcagga aacggacatg aggtctacgc ggtgtggctg
     1861 tatcacacct tcggcctgag tttccacgac gcggagctga tcctggccga acggggcatc
     1921 acggtcacct atgagaccgt ccggcagtgg tgcctcacat tcggcgccga cttcgcccgc
     1981 aggctgcgcc ggcgccgacc gaagccgggc gacacctggc acatggacga ggtgttcctg
     2041 cgcatcaacg gcgagctgca ctacctctgg cgcgcggtgg accagcacgg cgtcgtgctc
     2101 gacatcctgg tccaggagcg gcggaatgcc acggctgcca agcgtttctt ccggcacctg
     2161 ttgagcggga tgcggtacaa gccgaagcgc atcgtcactg acggcttgcg cagctacggt
     2221 gttgcgcatc gtgaggtcct gcccgaggtg cggcaccgga ccagtcggta cctgaacaac
     2281 cgggcggaga actcgcaccg gccgacgcgg cgccgcgag
//
LOCUS       DASVXZ010000234         1757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1267371, whole genome shotgun sequence.
ACCESSION   DASVXZ010000234 DASVXZ010000000
VERSION     DASVXZ010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1267371"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..485
                     /locus_tag="VF788_04560"
     CDS             <1..485
                     /locus_tag="VF788_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933458.1"
                     /translation="WRVVTSAAGAAGVAQHSPRVVRAVDLAESLVWPADEVVGLVRCC
                     WGLAGEVALLGRAGVAAGVVRSVRCCPELVEVVGLAGGVGVVEAVRHRGYAEVAGPCR
                     VPARQVDIAAVRSARSLRHRREFAGTHLANPFARHAGEGDGDEHFYFAEWDPACSAPG
                     "
     gene            complement(471..1583)
                     /locus_tag="VF788_04565"
     CDS             complement(471..1583)
                     /locus_tag="VF788_04565"
                     /inference="COORDINATES: protein motif:HMM:NF013094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEX8933459.1"
                     /translation="MPRLASMLPEPFYHATIVVGQNSLDAHYFQRTTGAILPVPQVTI
                     VGGVTDDSSVLQHLPASSTTSASAREQDVRHSRQLPLLGESTQEAFSKARVAVVGLGG
                     LGSFVALELAYLGVGHLTLIDPDRVELTNLNRLIGAGPEDVGRYKVEVFREHIQRVAS
                     HVEVTTVAAPILDSAALDEAKSADLLLGCVDGHGARLSLNHLSIRYLIPLIDAGTGAR
                     LGGDGLATKLGGQVQIVAPGVGCLECRGFIHAGRAAYDLASPAVQEYERDHGYGTEEA
                     MPSVIHLNGVVASMQVAVAVRVLSCGSEHEYATPKLVIYDAQVQRTFPASVSYSPECA
                     TCGIYGVAGVADLGPLQATPTAGPAFAPASLALARS"
BASE COUNT          319 a          483 c          595 g          360 t
ORIGIN      
        1 gctggcgcgt cgtgacctcg gcggccgggg cggccggggt tgcgcagcat tcaccgcggg
       61 tcgttcgagc ggttgatctc gccgagtcgc tggtctggcc agcggacgag gtggtgggac
      121 ttgttcggtg ttgctggggg ctcgcggggg aggttgctct gctaggacgg gcaggagttg
      181 cggcgggggt ggtgagatct gttcggtgct gtccggagtt ggtcgaggtg gtgggtctgg
      241 ctgggggagt gggcgttgtg gaggctgttc ggcatcgcgg gtacgccgaa gtggctggtc
      301 catgtagagt gccggcccgg caagttgaca ttgctgcggt gcggtcggct cggtctctgc
      361 ggcatcgtcg cgagttcgcc ggaacgcacc tcgccaaccc ctttgcccga cacgccggcg
      421 agggcgacgg cgatgagcac ttctatttcg cggaatggga tccggcatgt tcagctccgg
      481 gctagcgcca gtgatgctgg tgcgaaagca ggtcccgccg tgggggtggc ctgcaaaggt
      541 cctagatcgg caactcctgc gactccgtaa ataccgcagg tcgcgcactc gggtgagtaa
      601 ctaacactcg cgggaaaagt ccgctgaact tgcgcatcgt aaataactag tttcggtgtg
      661 gcgtattcgt gttctgaccc gcaggagagc actcgaacgg caaccgcaac ctgcattgat
      721 gctactacac cattcaaatg tatcactgat ggcatagctt cttcggtgcc gtagccgtgg
      781 tcgcgctcgt attcttgtac cgctggtgac gctaaatcgt acgccgcacg ccccgcatgg
      841 atgaagccac gacactcgag gcagcccact cctggtgcaa cgatctggac ttgcccgccg
      901 agtttcgtgg cgagaccgtc gccgccaagt ctggcaccgg tgccggcatc gatcagcggg
      961 atgaggtagc gaatggatag atgattcaat gacaggcggg caccgtgccc atcgacgcag
     1021 ccgagtaaca agtctgctga cttggcctcg tcgagggctg cgctgtcgag tatcggcgct
     1081 gctacggtcg ttacctcgac gtgggacgct acacgctgga tatgttcccg aaacacctcg
     1141 accttataac gtcccacgtc ttcgggtccg gcgccgatga gacggttgag gttggtgagt
     1201 tcgacgcggt caggatcgat cagagtcagg tggccgacgc cgaggtaggc aagttctaag
     1261 gcaacgaatg agccaagacc gccaagacca acgacagcga cccgcgcttt tgagaaggcc
     1321 tcttgtgtgg attcgccgag taaagggagt tgccggctgt gccggacgtc ctgttcgcgc
     1381 gcggaggcag aggtagtact tgacgccggc aggtgttgta agactgatga atcgtcggtg
     1441 acgccaccaa caatcgtcac ctgcggtacc ggcaagatcg ctccggtcgt ccgctgaaag
     1501 taatgagcgt cgagactgtt ctgtcccacc acgatggtcg cgtgataaaa tggttcgggc
     1561 aacattgatg cgaggcgggg cattttcatc cggtcgttgg accagtcgat gccactaaac
     1621 gttgtccgaa atcccgaatc gaacgggtgg gagtggactt cgatgaggct ccagccctct
     1681 ctccggcacc tgctcaacgc gtccgcgacg aactgaccgt ctgggctgat cgctgagggg
     1741 gactggtgat ccaaatc
//
LOCUS       DASVXZ010000235         4499 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1727620, whole genome shotgun sequence.
ACCESSION   DASVXZ010000235 DASVXZ010000000
VERSION     DASVXZ010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1727620"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VF788_04570"
     CDS             <1..189
                     /locus_tag="VF788_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933460.1"
                     /translation="VARPSRDLIEVHVSMLYSATCVRMDYSPVVNEVHQGDYRRWKGA
                     FAGAARCPPPRSGPHQRA"
     gene            344..1072
                     /locus_tag="VF788_04575"
     CDS             344..1072
                     /locus_tag="VF788_04575"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX8933461.1"
                     /translation="MTLAPELSPAPSVPGKVAAVCFDVDATLVDYETSTRAGLRELLG
                     TDDAWVEWCALTDQHYAGYLAGHIGFEPMLQQRTKDFFARRGEFLCDGEVVRREERRT
                     AAVRGAWRLFDDALPCLRALRKLGLRLAAITNAAGEHQRAKLGALGLDSAFDAVLISG
                     ELGVAKPHRAIFRRACRALGVRPGQTVHVGDQLATDAVGARDAGLHGVWLDRSGCGAL
                     PHGAGISVIGQLAELPALVSGRAG"
     gene            1172..1243
                     /locus_tag="VF788_04580"
     tRNA            1172..1243
                     /locus_tag="VF788_04580"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1205..1207,aa:Gln,seq:ctg)
     gene            1268..1340
                     /locus_tag="VF788_04585"
     tRNA            1268..1340
                     /locus_tag="VF788_04585"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1302..1304,aa:Glu,seq:ctc)
     gene            2442..3506
                     /locus_tag="VF788_04590"
     CDS             2442..3506
                     /locus_tag="VF788_04590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933462.1"
                     /translation="MRALKILAAVYETTWDRLVDIDDLEAMPAHDRRELLDISGRGYS
                     DSPDLLVPRQRRRRVSAAHSDAALQFGPPIAGWRSAIVREPLTIAAAGPASARSGGGL
                     PGEITHFTGRDGPMAELRARITEQTPQGPVVTIYAFDGMAGVGKTAFARHAAQEFAER
                     YPDGAIWVDLYGHTPGMQAREPSAALEQLLLQVGVPPEAIKPNLAERQDQWRYHIYAR
                     RKLIVLDNALTSDQVLPLLPEAPGYLVLITSRRKLTGLTDAYPLRSMCWGGMRWSGYS
                     SNWSASSDVRAVTRFARSWPPVVGCPWRSGLSLGGYVITVTNCSPTSLRTSPTRARRW
                     TPSSPTISRCGRHLSGPTDC"
     gene            3470..3808
                     /locus_tag="VF788_04595"
     CDS             3470..3808
                     /locus_tag="VF788_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933463.1"
                     /translation="MRAAFEWSYRLLTDAQRRAFRLLGWHPGPEITPVVIAAVADVSP
                     AQGRHLLREHVDHNLLDQLSAAGVPGGPRYRMHDLVRFYARERADAEEPPTERAAAVE
                     RLARSYLVLI"
     gene            3875..>4499
                     /locus_tag="VF788_04600"
     CDS             3875..>4499
                     /locus_tag="VF788_04600"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8933464.1"
                     /translation="MLALPDPSQARVWLTVERHNLLACVRAMSPTADAAELSTLPATH
                     LHDFGFWSDARDLYRQALTACRHLGNQAGEVDGLWGLGEVEWLVGEYGQAREHYTQAL
                     LLARPLGYRRGEAEALRSLGQVAWLVGDRGQAREYFTQALVLGRQVGYRFGEVLALCG
                     LGQIDQVGRAREYHSSALALARQLGYRFGEVLALCGLGEVEQVAGEAE"
BASE COUNT          759 a         1373 c         1485 g          882 t
ORIGIN      
        1 gtggcccggc cctcacgaga ccttattgag gttcacgtgt caatgttgta ttcggccacc
       61 tgtgtgagga tggactattc gccggtggtc aacgaggttc atcagggcga ttaccggcga
      121 tggaagggag cgttcgccgg agcggcccga tgcccaccgc ctcgatcggg cccccaccag
      181 cgtgcctgac gtcaagctag ccaccgggcg ctgacggtcc agatcggaca cgcagcgtac
      241 ccgtctccgg ttactcacag tgacgatacg actaacgaat cgttacgact tttcaccggg
      301 tcagcagagt cgtcgcgggc tcgcgacatc taacgtgcac cgggtgactc ttgcgcccga
      361 gctgagccct gcaccgtcgg ttcccggcaa ggtcgccgcc gtctgcttcg acgtagacgc
      421 gaccctagtt gattacgaga catcgactcg cgctgggctg cgtgagctgc tcggcaccga
      481 cgatgcgtgg gttgaatggt gcgcgctgac cgatcagcac tacgccggtt acctagcggg
      541 gcacatcggt tttgaaccga tgcttcagca gcgcactaaa gactttttcg cccggcgggg
      601 tgaatttctg tgcgatggcg aggtcgtccg gcgggaggaa cgccgcacgg ctgcggtccg
      661 gggagcgtgg cggctcttcg acgatgcgct gccgtgcctg cgggcgttgc ggaagcttgg
      721 actacggctg gctgcgatca ccaacgctgc tggcgaacac cagcgcgcca agctcggggc
      781 actgggcttg gactccgctt ttgatgcggt gctgatctcc ggtgagctcg gagtggccaa
      841 gccacaccga gctatctttc gaagggcctg tcgtgccctc ggcgtgcgtc cgggccagac
      901 cgtgcacgtc ggagaccagc tcgctaccga tgccgtgggc gcacgagacg ctgggctgca
      961 cggcgtatgg ctggaccgct ccggctgcgg cgccctgccg catggggccg gcatctcagt
     1021 gattgggcag ctggctgagc ttcccgcgct ggtcagcgga cgcgccggat gagtcctcgg
     1081 catccggctg cacgcgggta ccgacagtcg actaagattt ctgcccggtg ctcgtgcgga
     1141 tgcggaggag gccccggaaa tggacgagcg gtggggtatg gtgtaattgg cagcacgact
     1201 gattctggtt cagttagtct aggttcgagt cctggtaccc cagcgaatgt cgtcatcgcg
     1261 ttctcgcggc cccgtcgtct agcggcctag gacgccgccc tctcaaggcg gtagcgcggg
     1321 ttcaaatccc gtcggggcta cactgcggtg tcagcaacga tcggctccta gccggtaatt
     1381 gaggtcagga gccgatcttg tgttgttcga ccctccctgc ctggtgccat cgatctcctc
     1441 atagccatca aggcattggt ataaaccgca gaagcacctc tactgagtgc tcggccacgc
     1501 gctcgcctca cgttgcacgc cctggacact cgtactgtgc gtcgctccac cgctgccgtg
     1561 accgcggctg gcaccgcatg tgatcttgct gcgtctagtt tcgtctcttt catgccattc
     1621 aggtccaggg atgcctcgtc atttcctcgg ctggctttcg gggcccgctg gcgaagctgg
     1681 atcaactcgg ccagagcgcg gcaactgtct tcgcgtcccc gagactgtca atttttgcgg
     1741 gccaatccac gtagtgacgt ccgtgatcgt cgacagattg atatgctgag tctagaccgt
     1801 cgtcatgatt ctgattcaat ggtcgtagtc ggcgagcccg tcttccgtgc ggtaattcat
     1861 catgaacata agccgtcctt tcataatgca cacgactggg acagtcgcgg tctctcgcat
     1921 ccgcccgcga cgtggctgga taggcgagct agatcacttt gcagacgccg ccgacggttg
     1981 tcactcacac ggcgtggaaa ctttttctct cgtcgtcata acccgcttga gctggggaaa
     2041 tactgatgcc ttcgggtgga aaactcgcac caccgacgca agagcgctac ggtgagcgtc
     2101 gaccaatcga accgatacct cggaactcta gtatataaaa gtggccgagg agagtgagat
     2161 gtgtcatggg gcggaaacca ggcagcaagg cacaccgtaa tcaacttcga gctcgcctgg
     2221 cccggcttgg tgtggagggt cgccaactca tcgaacaggt tgtagctgag ctggcacgct
     2281 ccggctaccg accgcgtgag gcatggagat tggctcacga actcactcag gaagaggtgg
     2341 ccgcgcggtt taaccaggtc agaggtgagt cgggtagcgg cgcgcgtgga agtcgtatct
     2401 gtgagtatga gaagtggccg ataggaggaa gtcgaccatc gatgcgggca ctgaaaatcc
     2461 tggcggccgt atacgagacc acgtgggacc ggctcgtcga tattgacgat ctggaggcga
     2521 tgcccgcgca cgatcggcgg gaattactgg acatcagtgg tcgaggctac agcgattcac
     2581 cggatttgct ggtaccgcgc cagcgccgtc gtcgcgtgag cgccgcgcac agtgatgccg
     2641 ccttgcagtt cggcccacca atcgccggct ggagatcagc gattgtccga gaaccgctga
     2701 ccatcgcggc tgctggaccc gcatccgccc ggtcgggcgg cgggttgccc ggtgagatca
     2761 cacacttcac cgggagggac gggccgatgg ctgagctacg cgcacggatc accgagcaga
     2821 ctccgcaggg cccggtggta acgatctatg cctttgacgg tatggcaggc gtgggcaaga
     2881 cggcgtttgc ccgccatgcc gctcaagagt tcgccgagcg ctatccggac ggggcgatct
     2941 gggtcgacct ctatggtcac actcccggta tgcaagcccg tgaaccctct gccgcgctgg
     3001 agcagttatt gcttcaggtg ggcgtgccac ctgaagcaat caaaccgaac ctggcagaac
     3061 gccaggacca gtggcggtac cacatttacg cgcggcgcaa gctgatcgtg ctcgacaacg
     3121 cgttgaccag cgaccaggtg cttccgctgc ttcccgaggc gcccggttac ctggtgctga
     3181 tcaccagccg gcgcaaactg accggtctga ccgacgctta cccccttcgc tcgatgtgct
     3241 ggggtgggat gaggtggagc ggttattcgt caaattggtc ggcgagcagc gatgtgaggg
     3301 ccgtgacgcg gttcgccaga tcctggccgc ctgtggtcgg ttgcccttgg cgatcaggct
     3361 tatcgctggg cggttacgtc atcaccgtga cgaattgctc gccgacgtcg ctgcggactt
     3421 cgccgaccag agcgcggcgc tggacgcctt cgtcgccgac catctctcgg tgcgggcggc
     3481 atttgagtgg tcctaccgac tgttgaccga tgcgcaacgg cgggcctttc gcctactagg
     3541 ttggcatcct ggacccgaga tcactccggt ggtgatcgcc gcagtggccg acgtgtcgcc
     3601 ggcgcagggc agacatctgt tgcgcgagca cgtcgaccac aaccttctcg accagctttc
     3661 cgccgcgggt gttcccggcg gtccgcgcta ccgcatgcac gatttggtgc gcttctacgc
     3721 ccgagaacgg gcggacgcag aggagccacc gaccgagcgc gcggctgcag tggaacgcct
     3781 ggccaggagc tacctggtcc tcatctgaga ggccgaccag ttgttacggc cctatgtttc
     3841 agatggttca ggccagaacg cagctggggg aactgtgctg gcgttgcccg acccgtcgca
     3901 ggcgcgggtc tggctaaccg tcgagcggca caacctgctc gcgtgcgtgc gagcgatgag
     3961 cccgaccgcc gacgcggcag aactgtcgac gctgccggcc actcacttgc acgacttcgg
     4021 cttctggtcc gacgcccgag acctctaccg ccaagcgttg accgcctgcc ggcatcttgg
     4081 taaccaagcc ggcgaagtcg acgggctctg gggcctgggc gaggtcgagt ggctcgtcgg
     4141 cgagtacggc caggctcggg agcactacac ccaggccctg ctgctggccc ggcctctcgg
     4201 ttaccggcgt ggtgaagccg aggcgctacg gagtctgggt caggtagcgt ggctcgtcgg
     4261 cgatcgtggc caggctcgcg agtacttcac ccaggccttg gtccttggcc gacaggttgg
     4321 ttaccgcttc ggtgaggtcc tggcattgtg cgggttgggc cagattgacc aggtcggtag
     4381 ggctcgggag tatcacagtt ccgccttggc gctggcccgg cagctcggtt accgcttcgg
     4441 tgaggtgctg gcgctgtgcg ggctcggtga ggtggagcag gtggccggcg aagccgagc
//
LOCUS       DASVXZ010000236         6331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1190838, whole genome shotgun sequence.
ACCESSION   DASVXZ010000236 DASVXZ010000000
VERSION     DASVXZ010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6331
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1190838"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /gene="groES"
                     /locus_tag="VF788_04605"
     CDS             complement(<1..291)
                     /gene="groES"
                     /locus_tag="VF788_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEX8933465.1"
                     /translation="MASVNIKPLEDKIVVQASEAETTTASGIVIPDTAKEKPQEGKVL
                     AVGPGRVNDNGTRIPLDVSVGDVVLYTKYGGTEIKHNGEEYLILSARDVLAVV"
     gene            603..2198
                     /locus_tag="VF788_04610"
     CDS             603..2198
                     /locus_tag="VF788_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX8933466.1"
                     /translation="MNGPVGAGGRVVVRRRALVVGAAAGTVLISSPLGGSACGSAAGN
                     RSQVLSDPFTVGVASGDPTSDSVVLWTRLAPRPLAEDGFGGMPARPVEVEWELATDVQ
                     FRQIERRGRSTAIPEAAHSVHVELAGLSPGREYFYRFRTAGHLSRVGRTRTTPAATSL
                     DALTMCFACCSQYEHGWFSAYRGLAAEHPDVILHLGDYQYEYAAHQYIAPSGNVRDHV
                     GPVTETLANYRQRYAQYKTDPDLQAAHAVAPWLAVFDDHEVADNWAGDVPEKPQRGFL
                     ARRAAAFQAYYENMPLRRLSVPHGSAMQLYRRAQWGSLVTFHLLDTRQYRDDQPCGDR
                     LNSDCPQRSDPTRTITGAEQEKWLLDGLARSRARWDLLGQQVFFSQVDLTPGPGRGFN
                     PDAWDGYTGSRDRIVAGLRGSAVRNAVVLTGDIHSHWAAEVRERFDDPSSVPVGTELV
                     TSSITSGGDGSETDPHIAAILPENPHIRFFNNRRGYVRTRITAGELRADFQVMPFVSR
                     PGAAVQTGASFVVPDREPTLHPV"
     gene            complement(2208..3260)
                     /gene="tsaD"
                     /locus_tag="VF788_04615"
     CDS             complement(2208..3260)
                     /gene="tsaD"
                     /locus_tag="VF788_04615"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEX8933467.1"
                     /translation="MTGIVLGIETSCDETGVGVVQLAPDGKVTLLADEIASSVDEHAR
                     FGGVVPEVASRAHLQAMVPAVRRALRIAGVAPSDVDAVAVTAGPGLAGALLIGVAAAK
                     AYAAAWNVPLYGVNHLTAHVAVDTLEHGPLPPALALLVSGGHSSLLEVSSLVAPLHPL
                     GATVDDAAGEAFDKVARLLGLGFPGGPFIDRAAQDGDPGSVRFPRGLTGPGDAPYDFS
                     FSGLKTAVARHIEALEHQGIMVPVADVAAAFQEAVVDVLTAKALRAATDRGIDTLLIG
                     GGVAANSRLRALAQQRCAAAGLRLRVPRPRLCTDNGAMVAALGAHLLAVGAPASPLDI
                     PADPGMPITTSLVGMS"
     gene            complement(3295..3744)
                     /gene="rimI"
                     /locus_tag="VF788_04620"
     CDS             complement(3295..3744)
                     /gene="rimI"
                     /locus_tag="VF788_04620"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEX8933468.1"
                     /translation="MSFLIEPMVAADTPRCAELERLLFNGDDPWNPAAFMEAMAVGHH
                     YLAAREGDSLIGYAGLARVGTEAEVHTLAVDPAHHRRGIGRALLRAVLGHAVGATVFL
                     EVRTDNESAICLYRSEGFDVIGIRRGYYRPSGADAFTMRRLADQAAS"
     gene            complement(3741..4421)
                     /gene="tsaB"
                     /locus_tag="VF788_04625"
     CDS             complement(3741..4421)
                     /gene="tsaB"
                     /locus_tag="VF788_04625"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEX8933469.1"
                     /translation="MLVLALDTATSAVTAGLLRLPAAGSPTVEPSNETPEVLAERVSV
                     NARAHGELLMPSVCEVLASAGVSMQDLDAVVCGVGPGPFTGLRVGMVTAAALGDALSI
                     PVYPVCSLDAIAHRSGPGGPLLVITDARRREVYWARYDSSGARVDGPHVNRPEDLPLA
                     SVARVAGGTAALGLPVTPSCHPDPAALVAVAAAALRSDAPPGPLTPLYLRRPDAVEPG
                     PAKRVTPV"
     gene            complement(4433..4975)
                     /gene="tsaE"
                     /locus_tag="VF788_04630"
     CDS             complement(4433..4975)
                     /gene="tsaE"
                     /locus_tag="VF788_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020628632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEX8933470.1"
                     /translation="MCRGPALTVETGKCLVLELATPADTERLGRAVGERLRPGDVVVL
                     SGPLGAGKTVLARGIGAGLGVRGPVTSPTFVIAREHPALPGGRGVPLVHVDAYRLGGM
                     VELDDLDLDTDLLEAAVVVEWGEGMAERLSDEFLLIRLHRPGNGGDEDRRVARLSGPA
                     RLIPESTALVAAREPEMGDP"
     gene            complement(4954..6021)
                     /locus_tag="VF788_04635"
     CDS             complement(4954..6021)
                     /locus_tag="VF788_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8933471.1"
                     /translation="MKPRLVVGAALSTVATTALVAGAVHLNRVGKLRRDAAHRPDELP
                     PELPPDREYTVFADDGLALSVEELDPVDGGSPELTVVLVHGYLLDRRTWLFQRYELAH
                     FTRPRVRQVLYDLRSHGRSGRSLRGASTIEQLGRDLYAVLSKAAPEGPIVLIGHSMGG
                     MTIMALAEQNPELFAERISGVAFLNTSAGEIGRSGLSRPFLSPRNPIMPVARRLSSWE
                     PSTRAIDRGRNAAGNLAWSLTRKLSFVDESVSPAVVELLYAMINSTSFEVVVDFVATF
                     GLHNRYAALAGLRRAKALVLGTDRDLLLPYQHAEEIAELLTDVELVMVKGAGHLPMLE
                     QPKRVNDHLLEFLSKCAGALH"
     gene            complement(6018..>6331)
                     /locus_tag="VF788_04640"
     CDS             complement(6018..>6331)
                     /locus_tag="VF788_04640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alanine racemase C-terminal domain-containing
                     protein"
                     /protein_id="HEX8933472.1"
                     /translation="GYADGVPRVLTGQLDVWLAGRRRPVVGRVCMDQLMVDCGDDQVD
                     EGAEVIFFGAGGDGAPTAAEWAGKMGTIHYEVVAGMARPGLTRTVRGRRAAPTLARIA
                     R"
BASE COUNT         1070 a         2247 c         2062 g          952 t
ORIGIN      
        1 gacaacggca agcacgtcac gggcggaaag aatcaggtac tcctcaccgt tgtgcttgat
       61 ctcggtgccg ccgtacttgg tgtagaggac gacgtcgccg acactcacat ccagcgggat
      121 gcgggtgccg ttgtcattga cgcgacccgg gcctacggca aggaccttgc cctcctgggg
      181 cttttccttg gccgtatccg gaatgacaat gccggacgca gtcgtcgtct cagcctcgct
      241 ggcctgtacg acaatcttgt cctcgagcgg cttgatgttc acgctcgcca cggtatgacc
      301 tccactttct ggggtcttcg aagagctggc aggttgggtg ttgctggctc ctgccacccc
      361 gccgtcgcgg gtgtcgaggc ggcccgggcc tttgctagca ctctggtgac cagagtgcta
      421 attggcagac tactgccccg agtgctaacc attcaaccgg ggtagcccaa aacccagcct
      481 cagctgcgct gtgcctcccg aacccaacac cagagctctt gcgaacgccc cgggagaacg
      541 ttgctgttga gctcgggagc gtggcgtctc agactggcgc ggatcagaca ctctggcgtg
      601 tgatgaacgg accggtgggg gcagggggtc gcgtagtggt caggcggcgg gcgctggtcg
      661 tgggtgccgc agcggggacc gtgctcatct cctcgccgtt ggggggatca gcgtgcggat
      721 cggcggcagg gaaccgtagt caggtcctta gcgatccctt caccgtggga gtggcctcgg
      781 gcgatcccac ctcggacagc gtggtgctct ggacccggct tgcacctcgc ccgctagccg
      841 aggacggctt tggaggaatg cccgcgcgcc cggtcgaggt ggagtgggag ctcgctaccg
      901 acgtgcagtt ccggcagatc gagcggcgcg gacgcagtac cgcgatcccg gaagcggcgc
      961 acagcgtgca tgtcgagctc gccggtttga gcccaggccg cgagtacttc taccggttcc
     1021 gcacggctgg acatctctca agggtgggcc gcacccggac gacgccggct gcaaccagcc
     1081 tcgacgcgct cacgatgtgc tttgcgtgct gctcccagta cgagcacggg tggttcagcg
     1141 cctaccgcgg gctggccgcc gagcacccgg acgtcatcct gcaccttggc gactaccagt
     1201 acgagtacgc cgctcaccaa tacatcgccc cgagtggcaa cgtccgcgac cacgtcggac
     1261 cggtgactga gacgctggcg aactaccggc agcgctatgc ccagtacaag accgatcccg
     1321 acttgcaagc agcccatgcg gtcgcaccgt ggctggcggt gttcgacgac cacgaggtgg
     1381 ctgacaattg ggccggtgac gtgccggaaa agccgcaacg agggtttctc gcccggcgcg
     1441 cggcagcgtt tcaggcctac tacgagaaca tgccgctgcg ccggctctcg gtgccacacg
     1501 gcagcgccat gcagctctac cgccgagcgc agtggggctc attggtcacc ttccacctgc
     1561 tcgatacccg gcagtaccgc gacgaccagc cctgcggcga ccggctcaac tcggactgcc
     1621 cgcagcgttc cgatcccact cgcacgatca ccggggccga gcaggagaag tggctgctgg
     1681 acggcctggc gcgatcccga gcccgttggg atctgctggg ccagcaggtc ttcttctcgc
     1741 aggttgacct gacacccggg ccgggccgtg gtttcaaccc cgatgcgtgg gacggctaca
     1801 ccggcagccg cgatcggata gtcgctgggc tgcgtggatc agcggtgcgc aacgccgtgg
     1861 tgctcaccgg tgacatccac tcgcactggg cggccgaagt ccgggaacgc ttcgatgatc
     1921 cttcgtcggt accggtcggt accgaattgg tgaccagctc gatcacctcg ggcggggatg
     1981 gctcagagac cgatccgcac atcgccgcaa tcctccccga gaatccccac atccgcttct
     2041 tcaacaaccg ccgcgggtac gtgcgcaccc ggatcactgc tggtgagctc cgggccgact
     2101 tccaagtgat gcccttcgtg tcccggcccg gcgcggcagt gcagaccgga gcatccttcg
     2161 tggtgcccga tcgagaaccg accctgcacc cggtctagcc gcagctctca actcataccc
     2221 accagcgagg tggtgattgg catgcccggg tcggcgggga tgtcgagcgg tgacgcgggc
     2281 gcgccgacgg cgagcaggtg cgcgccgagc gcggccacca tggctccgtt gtcggtgcac
     2341 aaccggggtc ggggaacccg tagccgcagc ccggccgccg cgcagcgctg ctgcgccagc
     2401 gcgcgtaacc gggagttggc ggcgaccccg cccccgatga gcagggtgtc gatcccgcgg
     2461 tcagtggcgg cccggagcgc cttggcggtg agcacatcga ccacggcctc ctggaacgct
     2521 gccgccacgt cggcgaccgg caccatgatc ccctgatgtt ccagcgcctc gatatgccgc
     2581 gcgacagcgg tcttgagccc ggaaaaggag aaatcgtagg gcgcgtcacc tggtccggtg
     2641 aggcctcgcg gaaatcggac gctgcccgga tcaccgtcct gagctgcccg gtcgatgaac
     2701 ggcccaccag ggaagcccag cccaagcaac cgcgccacct tgtcgaacgc ctccccggcg
     2761 gcgtcatcga ctgtggcgcc cagcgggtgc aacggagcca ccagcgacga cacctcaagc
     2821 aggctggaat gcccgccgga aaccagcagg gccagcgccg gaggtagcgg accgtgctcc
     2881 agggtatcca ccgcgacgtg tgcggtgagg tgattgaccc cgtagagcgg gacgttccac
     2941 gccgccgcgt acgccttggc cgcagccacc ccgatcagca gggcgcccgc cagccccggt
     3001 cccgcagtga ccgccaccgc atcgacgtcg gagggtgcga caccagcgat ccgcagcgca
     3061 cggcgcaccg ctggcaccat cgcctggagg tgggcccggg acgccacctc gggcaccaca
     3121 ccaccgaagc gggcatgctc gtcgacgctg gaggcgatct catcggcgag cagggtgact
     3181 ttcccgtccg gggccaactg cacgacgccc acgccggttt cgtcgcagga ggtctcgatc
     3241 cccaatacga tcccggtcac gatgccgcct ccgcgggacc aagtacgtcg gcggtcacga
     3301 tgccgcctgg tcggccagcc tgcgcatggt gaacgcgtca gccccgctag gccggtagta
     3361 accgcggcgg ataccaatca cgtcgaatcc ctcactgcga tagaggcaga tcgctgactc
     3421 gttgtcggtg cgcacctcaa ggaacaccgt ggcccccacc gcatggccga ggaccgctcg
     3481 cagcaacgcg cgcccgatcc cccggcgatg atgcgccggg tccaccgcga gggtatggac
     3541 ctcagcctcg gtcccgaccc gcgccagacc tgcatagccg atcagcgagt cgccctcccg
     3601 cgcggcgaga taatggtgac ccacggccat cgcttccatg aatgccgcgg ggttccacgg
     3661 gtcgtcgccg ttgaacagca ggcgttccag ctcggcgcag cgcggcgtgt cagcggccac
     3721 catcggctcg atcaggaagc tcataccggc gtgacccttt tggccggacc gggctccacg
     3781 gcgtcagggc gccgcaagta cagcggagtg agcggtccag gcggtgcatc ggaccgtaag
     3841 gctgccgccg ccacggcgac cagtgcggcc ggatcaggat ggcacgacgg tgtcaccggc
     3901 aaccccagcg cggcggtccc accggccacc cgggccacgc tggccagcgg caggtcctcc
     3961 ggccggttca cgtggggacc gtccacccgc gcgccggagg agtcgtaacg cgcccagtag
     4021 acctctcggc gccgtgcgtc ggtgatcacc agcaacggac cgccgggacc ggaccggtgg
     4081 gcgatcgcgt ccagactgca caccggatac accgggatgc tcagggcatc gcccagcgcc
     4141 gcggcagtga ccatcccgac ccgaagcccg gtgaacggcc ccgggcccac cccgcagacc
     4201 accgcatcga gatcctgcat cgacaccccg gcgctcgcca gtacctcgca caccgaaggc
     4261 atgagcagct caccatgggc cctggcgttc acgctgacgc gttctgccag aacctccggc
     4321 gtctcattcg acggttcgac cgtcggcgag cctgcagcgg gcagccgaag taaccccgcg
     4381 gttaccgcag aggtcgccgt gtccagagcc aataccagca cagacgacga gtttacggat
     4441 cacccatttc gggctcgcga gcagccacga gggcggtcga ctcgggaatc aaccgggccg
     4501 gaccggacag tcgcgcgact cgacgatcct cgtcaccgcc gttgcccggc cgatgcagcc
     4561 ggatcaggag gaattcgtcg gacagccgct cggccatgcc ctcgccccac tcgacgacca
     4621 cggcggcctc gagcaggtcc gtgtccaggt cgagatcgtc gagctctacc atcccgccga
     4681 gccggtaggc gtcaacgtgc accagtggca ctccgcgccc gccgggcagg gcgggatgct
     4741 cccgggcgat cacaaaggtc ggggaggtca ccggcccgcg cacgcccagc cctgcgccga
     4801 ttccacgggc cagcacggtt ttgcccgcgc ccagcggccc ggacagcacc accacatcac
     4861 ccgggcgcag ccgctcgccc accgcccgac cgaggcgttc ggtgtccgcc ggggttgcca
     4921 gctccagcac cagacactta cccgtttcta ccgtcagtgc agggccccgg cacatttact
     4981 cagaaactcc aggagatggt cgttgacgcg cttgggttgt tccagcatcg gcaggtggcc
     5041 cgcccccttc accatcacca gctcgacatc ggtcagcagc tccgcgatct cctcggcgtg
     5101 ctggtacggg agcaggaggt cacggtcggt tccgagcacc agcgccttgg ctcgccgcag
     5161 accggccagc gcggcatacc ggttgtgcaa cccgaaagtg gccacgaagt cgaccacgac
     5221 ttcaaaggag gttgaattga tcatcgcata caacagttcg acgaccgcgg ggctgaccga
     5281 ctcgtcgacg aaggacagct tgcgggtcag gctccaggcc agattcccgg cggcattccg
     5341 cccacgatcg atcgcccgag tgctgggctc ccagctggac agccgcctgg ccaccggcat
     5401 gatcgggttg cgcggggaca ggaacgggcg tgagaggcct gaccggccga tctccccggc
     5461 actggtgttg aggaaggcca ccccggagat ccgctcggcg aacagctcag ggttttgctc
     5521 agccagtgcc atgatcgtca tgccgcccat ggaatgcccg atcagcacga tcgggccctc
     5581 gggggcggcc ttactgagca ccgcgtacag gtcgcgaccg agttgctcga tggtgctggc
     5641 gccgcggagt gaacgaccgg agcggccgtg gctgcgcagg tcatagagca cctggcgaac
     5701 tcgtggcctg gtgaaatgcg ccagctcgta ccgctggaaa agccacgtcc gccgatccag
     5761 taagtagccg tgcaccagca cgaccgtgag ctcaggcgac ccaccatcga ccgggtccag
     5821 ctcctccacc gacagggcta gcccgtcgtc ggcgaacacc gtgtactccc ggtccggcgg
     5881 cagctcgggt ggcagctcgt caggccggtg cgcagcatcc ctgcgcagct tgccgacgcg
     5941 gttgaggtgc acagcgccag cgacgagtgc ggtcgttgcg acagtgctca gcgctgcgcc
     6001 gaccactaat cggggcttca tcgggcaatc cgcgccagtg tcggagccgc acggcgaccc
     6061 cgcacggtcc gggtcaaccc gggacgggcc attcccgcca ccacttcgta atgaatggtg
     6121 cccatcttgc cggcccattc cgcggcagtg ggcgcgccat ctccgccggc cccgaaaaag
     6181 atcacctcgg cgccctcgtc gacctggtcg tccccgcagt cgaccatcag ctgatccatg
     6241 cacactcttc ccaccaccgg gcggcgtcgc ccagccagcc acacgtctag ctgaccggtg
     6301 agtacccgcg gcacaccgtc ggcgtacccg g
//
LOCUS       DASVXZ010000237        15168 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1357058, whole genome shotgun sequence.
ACCESSION   DASVXZ010000237 DASVXZ010000000
VERSION     DASVXZ010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 15168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15168
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357058"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VF788_04645"
     CDS             complement(<1..513)
                     /locus_tag="VF788_04645"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933473.1"
                     /translation="MSTSLREPVRVVVVDDHQMVLDGLRAMLATYSGQVEIVGEATEP
                     DLALRVITWQEPDITLLDVRLRGSSGLDLCAEIQKRQPGCKVVFMTVYDDEQYLYQAL
                     RLGAAGFLLKRVRGAELVDHLQRIHQGEVLIDPSLATKVAMSVAHLRGGEFWPGARLG
                     LTQRESEVLAL"
     gene            complement(575..1087)
                     /locus_tag="VF788_04650"
     CDS             complement(575..1087)
                     /locus_tag="VF788_04650"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8933474.1"
                     /translation="MITGDTPSQVIEVRTAAERDLTTVRRIVTAAYAEFESWLTPANW
                     ARMTGNIAKVIEPDAPGLLRVAQLGDQLAGTVTYLPPGPKDYQRVPPEWAVIRVLGVD
                     PTLRGRGVARALTEDCLTLARVDHAPAVGLHTAEMMVAARALYEGAGFLHQHDFTHLD
                     LRFSIYMRPM"
     gene            1162..1845
                     /locus_tag="VF788_04655"
     CDS             1162..1845
                     /locus_tag="VF788_04655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8933475.1"
                     /translation="MVPSNSPRKPTREAVESADVVVVVGADDESDVVVVGTDTESGRE
                     RVMRAAYELFSRRGTRTVGVDAVIGEAGVAKMTLYRNFASKDDLILAFLERREADWTH
                     GWVRAESQRRGTSPAQRLLAIFDIFGEWFARPDFEGCSFVTTLLEVTDRDSPVRQASV
                     RHLANIRSYLCELAEQAGVADPDSFARKWHILMKGSIVAAAEGDTLAAARARELGLIL
                     LKQHGIAPE"
     gene            2008..3870
                     /locus_tag="VF788_04660"
     CDS             2008..3870
                     /locus_tag="VF788_04660"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF006396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HEX8933476.1"
                     /translation="MDATEPGAVLEELRAGQIVVCDGAMGTMLHAAGVPLDRSLPELN
                     LSRPALVRDLHWAYVSAGARILQTNTFGANRLRLAGSALENSVSEINIAGARLAREAA
                     QRAGHPVLVAGSVGPAVSAPAVRRVPASARAETLREQIAALCNWVDLLILETFGDLES
                     LIQAVEVAASESDLPVVAQLTFGDDGRTLRGEDPAEAAAVLSDLPVTALGANCTVGPA
                     VLVGVVSEMVRGTELPVSVQPNAGIPQRLGGQVRYARNAAYFAEAAQRFVSAGATLLG
                     GCCGTTPAHVRAISQAVAALPPIQRPPTLGATPRPAYPAGTRLASPAPGWPWERELVV
                     AAGLQAPNGPQVPEFLERATTLRAAGAGVLAIIETAPPAARISPVGAAVVVRERVGSE
                     VLLPVETADRNLAALQADLLGAHALGLRMVVCRTGSPRVAGDYPIAPGGTPWDVDSVG
                     LIAMLGALNDGIDWRGVATAEHTRFVIGGTLHTAAGDVANELDRAESKFRAGAHFLVT
                     DVIYDVEEATRVLGMLRARGVGLPVLVTLAPFADVRTLQRLSYEVPEGSIPQSALAAA
                     WRHRDNPEQAVEFSVGAVEKLRHLISGVMVQVPSGVDEQAVRLVTALARLRGSS"
     gene            3867..5168
                     /locus_tag="VF788_04665"
     CDS             3867..5168
                     /locus_tag="VF788_04665"
                     /inference="COORDINATES: protein motif:HMM:NF037653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933477.1"
                     /translation="MTTSGRSERAPAWEHGTALSGLSRQNSIYRRTMAVCDELADAAL
                     GGADPVRLTEVFARLVGKRIVLLDIAFRLRAQAGGSGPLRGLRWNRTDPSVDRLLCAL
                     EAARRPLRIPAIPGSLLDQACLVAPVVVRETSLGYLLVLDEVTAGSGYGAQPDDAEFL
                     TVTYAATLFALTLAHEQTSAELDLRYRSSVVDALVSGHFLDAQDARRKARSLGLGDDA
                     LLRVAMLRPVPSAPDCAPGDRAPGSWAQQIASIVPGAGAAVRDGALVVIVPGDPSVDA
                     LSALCRLGPGVTCGLSEQVESPELLPRGVRQAERSIDLGLRLGRAGQPVRYEELGIYR
                     LLCTIGDMRQLMGFARDVLGPLLDYDTEHRAELVRTLSVYLHHHGSHKQSARTLHLHT
                     NTVAYRVARIEAISRLDLGDPDDRLIAHVAVKIIEAQGTAE"
     gene            5206..6903
                     /gene="menD"
                     /locus_tag="VF788_04670"
     CDS             5206..6903
                     /gene="menD"
                     /locus_tag="VF788_04670"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070204 -
                     2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
                     carboxylic-acid synthase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HEX8933478.1"
                     /translation="MLNPGTALARVLVDELARGGVTEAVIAPGSRSAPLAIAFAEHAG
                     IRLHVRIDERSAAFLGLGLAKASGKPVPIVCTSGTAAANFHPAVLEASHSQMGLVVLT
                     SDRPPELRGTGANQTADQTKLYGDAVRFFTEFGVAEARPGMVAYWRSVICRALSAARG
                     QGPVHLNVPFREPLLPDPTDEAWPEPLDGRSEGRPWTDDLRSMAAIIDPVVTLADLPE
                     RGILVAGDGAVAPERAVAFAEAAGWPIFAEPMSGARFGPNAVTTYSQLVAIPEVADRY
                     RPDAVITVGKPGLAKALLALYPQVPHLVVDPIAHWADPTRTASRVIHTLPVLGCTRGS
                     SDWLAAWQRMELVARDELARILGREHELSELRLAWEMADLAGDNALFFVGSSMPVRCL
                     DLAMRAGAGPWVLANRGVSGIDGCVSTAVGAALAHQVNGGGPAVAMLGDLSVIHDQNG
                     LVIGPGEPRPDLTLVVVNNDGGGIFSFLPYSGMAKFEKLFGTPHGVNFAHTAAASGWD
                     YQRITSADEIAGALKEGGTRLVEVHTDRQGSALLHRRVREAVSAAVLTVGGLDVSPG"
     gene            complement(6900..7175)
                     /locus_tag="VF788_04675"
     CDS             complement(6900..7175)
                     /locus_tag="VF788_04675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933479.1"
                     /translation="MTETEPTMPNPEPSHHDEAAALVPQRGPDLLPLIAGLGALGISA
                     ATLLGGIAWLPDIDSRWVLAALALIIGLLLVIGSLRPQKPEHDGSRP"
     gene            complement(7172..8404)
                     /locus_tag="VF788_04680"
     CDS             complement(7172..8404)
                     /locus_tag="VF788_04680"
                     /inference="COORDINATES: protein motif:HMM:NF021443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEX8933480.1"
                     /translation="MSEINLEHTARDFWATRPRRRTDDRKIAGVAAAIARRYGIDPVL
                     VRVAFVVATICSGGAGVLLYLLGWLLLPAQGDQSSGAESVIGRGRSSMSAVLTIVLVL
                     LLIPVTAAVLGGHGSGIIGLAVGLGALLLLHRSRAALGEIPGSPPAAAPSSGHPPETA
                     QAIPATPGAPGVTTDDPERPAPPAWDPLGAAPFAWDLPEPSAPPAATTPRRWAGSKIT
                     PITLGLALLAGGIALAFGPGLSAAQIAAILLGVVGLGLVIGSFLHGGRGLVPIAVPLA
                     LLTWILSAAPTSDFQVGTRHWSPTTTAELQQQYSVTLGNGDLDLSHLQLTNGQTVKTN
                     VAVGVGETHVFIPPNVDAQVSCRTQVGDVDCLGRTDSGGSPSRVTLTDTGTDGPGGGT
                     LILDVHSGVGQIHVDRTS"
     gene            8522..9811
                     /locus_tag="VF788_04685"
     CDS             8522..9811
                     /locus_tag="VF788_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEX8933481.1"
                     /translation="MTGVSTAADQATGTRSPAEPVARPVQLSRHRSDRVIAGISSGIA
                     EHLGVPVLWVRLIFVALAGLGGAGLIGYALLWAFLPATETPARGPGNPRERQQAVGLV
                     VLGVGLAIAGAALGTAWGGWVTGPLGVALVGAGVVWREADTGQRTRWRSGAGVVFGGR
                     MALLRVLAGIALVTSGIAVFLLNQGNLGQARFALLAAAATLVGVAVLTVPWWLRLMRA
                     LGEERRARIRTEERAEIAAHLHDSVLQTLALIQQQSDSAREVRRLARGQERELRAWLY
                     GAQGYGRVTQARANGAGAAEPAFAATLHAAAGEVEDTYAVSMQVVVVGDCVLEEPLLS
                     LVQSSREAMVNAAKHAGVSEVSVYAEVEPGQVHVFVRDRGAGFDPATVAADRHGLADS
                     IHGRMERHGGTVSVRTAPGEGTEVQLAIARRKGGEQT"
     gene            9808..10500
                     /locus_tag="VF788_04690"
     CDS             9808..10500
                     /locus_tag="VF788_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933482.1"
                     /translation="MTGDTSEDRTIRVFLVDDHVLFRTGVKAELDRAGAADPDVPPVV
                     VVGEGGSVAEAVAGIGHLRPDVVLLDVHMPDGGGAEVLRRVRPERPEVVFLALSVSDA
                     AEDVIAVIRGGARGYVTKTISGRELADAVRRVHGGDPVFSPRLAGFVLDAFAQRPGEA
                     PVSDPEVDLLTPRERDVLRLLARGYAYKEIASELFISIKTVETHVSSVLRKTQLSNRY
                     ELSRWASDRRLV"
     gene            complement(10570..10986)
                     /locus_tag="VF788_04695"
     CDS             complement(10570..10986)
                     /locus_tag="VF788_04695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933483.1"
                     /translation="MSPRRGSVPPHSPTGDAQEHRRPPARRARRPLATAITFENDPPL
                     PAAWWATLGALYDTLFARLARRGFRTAVAGMTLPNDASVGLHRAMGFVPVETYRHIGG
                     SMAGGTTCLGSADDHHGPGPTFRAPVRCSRTVNPRL"
     gene            complement(10940..12478)
                     /locus_tag="VF788_04700"
     CDS             complement(10940..12478)
                     /locus_tag="VF788_04700"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX8933484.1"
                     /translation="MNADTRLVAGRYRLDRQIGSGAMGVVWRAHDERLDRTVALKELL
                     MQPGLDEEEAERARARAMREGRIAARLQHPHAISVYDVALDHGTGAGEQVVPWLVMEY
                     LPAPSLATVLAEHGALPPHEVARIGWQVAAALTAAHQAGIVHRDVKPGNVLLGQDGTV
                     KITDFGISRASWDATVTRTGMLAGTPAYFAPEVARGELPGSPSDVFSLGSMLYVAVEG
                     EPPFGLDDNTLALLRTVAEGRVRPPLRAGPLSTVLMQLLADDPAARPAMPDVVAALSA
                     IAAHGATSADALPLFTSPAGRSPRPRTAAPTQAMSLPVGVPTGSPPRTRGRRAARVAW
                     WRRPAMLFGTAACLVVLAVVLSVMGTVPIFGPTGGRGQLAAPATRTFAPQPPQSPQLP
                     QPAQSPQPAQKPPPEQLEQTVRTYYGLLPEDTTVAWQYLGPAEHAQGFQHYDKFWNGI
                     NGVSIRGPVAVQGNTVLVGLVFEPVNRKRTLERYRLTMSNAPDGRVLIESASRIGTSA
                     LADR"
     gene            complement(12599..12907)
                     /locus_tag="VF788_04705"
     CDS             complement(12599..12907)
                     /locus_tag="VF788_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020420061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933485.1"
                     /translation="MVLNVIAVLAALAGLLAAAAHGGYLAMLGSAANRRAGGDPISQY
                     VRGRVPVAGVTLAVALLALLLSTGGTVADILAILAGAGSGVISYQALQTTRTRYRSGG
                     "
     gene            complement(12972..13265)
                     /locus_tag="VF788_04710"
     CDS             complement(12972..13265)
                     /locus_tag="VF788_04710"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEX8933486.1"
                     /translation="MSRNAPSEAAVTVSDGSAPDLAALRTEIDYLDAEILRLVQRRTA
                     VSHAIGRARRAAGGPRVVHGREMAVLDRYRALGEEGRELAMLLLRLGRGRLGH"
     gene            13532..>15168
                     /locus_tag="VF788_04715"
     CDS             13532..>15168
                     /locus_tag="VF788_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010316050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEX8933487.1"
                     /translation="MSTSVVTGPPRDLLAGLNPQQRLAVEHAGSPLLIVAGAGSGKTR
                     VLAHRIAYLLAHRGVAPGQVLAITFTNKAAAEMRQRVSALVGGRSAVMWVSTFHSMCV
                     RILRREASHLAGLTSNFSIYDADDTRRLTAMVARDFDLDPKRYPARTLAAKISNLKNE
                     LLDPGAAASAAGNDFDRRVAEIYAGYQQRLAVSNALDFDDLIMRTVEMLQTLPDVAEH
                     YRRRFRHILVDEYQDTNHAQYVLVRELVGPGSAEGATEAAELCVVGDADQSIYAFRGA
                     TIRNIEEFERDFPNARTILLEQNYRSTQTILSAANAVISRNPGRRDKRLWSAAGDGEP
                     IVGYVADNEHDEAAFVASEIDQLVDSDKARFGDVAVFYRTNNASRVFEEVFIRLGLPY
                     KVVGGVRFYERREVRDALAYLRVLDNPEDTVSLRRILNTPRRGIGDRAEAVAATYAER
                     ERISFAAALRAAAAGQDIPLLNPRSRNAITAFVVMMDELREKVAAGEEVADVLDAVLE
                     RTGYRAELDASEDPQDGSRLDNLTELVTVAREFASEGG"
BASE COUNT         2359 a         4953 c         5311 g         2545 t
ORIGIN      
        1 cagcgccagc acctcgctct cccgctgggt cagccccaga cgcgctcccg gccagaactc
       61 cccgccacgc aggtgggcca ccgacatagc caccttcgtc gccaggctgg gatcgatcag
      121 aacctcaccc tggtggatcc gctgcaggtg atccaccagc tctgcgccac gcacccgctt
      181 gagcaggaat ccggcggcgc ccaggcgcag cgcctggtag aggtactgct cgtcgtcgta
      241 gaccgtcatg aacacgactt tgcagccggg ttggcgtttc tggatctcgg cgcacaagtc
      301 caacccgctg gagccgcgta accggacatc gagcaaggtg atgtcgggct cctgccacgt
      361 gatgaccctg agcgcgagat ccggttcggt ggcctcaccg acgatctcaa cctgaccgga
      421 ataggtagcc agcattgcgc gcaacccatc gagcaccatc tggtggtcat ctaccacgac
      481 tacccgcacc ggctcccgaa gtgaggtgct catggcagca gcctacgcac cgacggtagt
      541 ggcgcaggag ccaacgaagc ggcttgccac cccgtcacat aggtcgcatg tagatgctga
      601 accgcagatc caagtgggtg aagtcgtgct ggtggaggaa gccggcgccc tcgtagagcg
      661 cgcgtgcggc gaccatcatc tctgcggtgt gcagacccac tgcgggcgcg tgatccaccc
      721 gggccagggt taggcaatcc tcggtgaggg cgcgggccac cccgcggcca cgcagcgtcg
      781 ggtcgactcc cagcacccgg atgaccgccc actccggggg cacccgctgg taatccttgg
      841 ggccgggtgg caggtaggtc accgtgccgg cgagctgatc gccgagttgc gcgacccgga
      901 gcaggcccgg cgcgtccggc tcgatgacct tggcgatgtt gccggtcatc cgggcccagt
      961 tcgccggagt cagccaggat tcgaactccg cgtacgccgc ggtgacgatc cggcgtacgg
     1021 ttgttaggtc ccgttcagcg gccgtgcgca cctcgattac ctgggacggg gtgtccccag
     1081 tgatcatcgg ttacccatag gattccggtg gtgaaatccc ccactggtac agtgggtcaa
     1141 tttttctccc aggattggtc aatggtgccc tcgaactccc cacggaaacc tacccgagaa
     1201 gcggtggaat ccgctgatgt cgttgttgtg gtcggagccg atgacgagag tgacgtcgtt
     1261 gtcgtcggaa ccgataccga aagcggccgt gagcgggtga tgcgagcggc ctatgagctg
     1321 ttcagccgcc gtggcacccg caccgtcggg gtggatgcgg tgatcggcga ggcgggcgtc
     1381 gccaagatga ccctttaccg gaacttcgcc tccaaggatg atcttattct ggccttcctc
     1441 gagcgtcgcg aggctgactg gactcacggt tgggtgcggg ccgagtcgca gcgccggggg
     1501 acgagcccag cgcagcgcct gctggccatc ttcgacatct tcggtgaatg gttcgcccgc
     1561 ccggatttcg agggctgctc ctttgtgacc acgctgctcg aagtgaccga tcgggatagt
     1621 ccggtccggc aggcgagcgt ccggcacctg gcgaacatcc gcagctacct gtgcgagctc
     1681 gccgaacaag ccggggtggc ggatcctgat tccttcgccc gcaagtggca catcctcatg
     1741 aagggatcca tcgtcgccgc cgccgagggt gacaccctgg ccgccgcgcg tgctcgcgaa
     1801 ctcggcctca tcctgctcaa acagcacgga atcgcacccg aataaccaac cacccgtgcg
     1861 gcaccgcgtt tcggcgcaca acatcgccaa ctcaacagcc gccaactcaa cagcagaggc
     1921 actcaatgtg cctcgagttc acggagtgca cgagagctcg atgtttcggg tgagctggga
     1981 gagaattcgc gtctggaggc gagaggcgtg gacgcaacgg agcctggagc ggtgctggag
     2041 gagttgcggg cgggtcagat tgtggtgtgc gacggcgcga tgggcaccat gctccatgcg
     2101 gccggggttc cgctggaccg ctcgctgcct gaactgaacc tgtcacgtcc agccctggtc
     2161 cgtgacctgc actgggcgta cgtcagcgcg ggcgcccgga tcctgcagac caataccttc
     2221 ggcgcgaacc ggctgcggct ggccggttcc gcgctggaga acagtgtctc cgagatcaac
     2281 atcgccggcg ctcgcctggc ccgtgaggca gctcagcgcg cagggcatcc ggtgctggtc
     2341 gccgggtcgg tcggaccagc ggtcagcgcg cccgcggtcc gccgagtacc ggccagcgcg
     2401 cgagctgaga cccttcgcga gcagattgcc gcgctgtgca actgggtcga tctgttgatc
     2461 ctggagacct tcggcgatct ggaatccttg atccaagctg tcgaggtggc cgcctcggag
     2521 agtgacctac cggtggtggc ccagctgact tttggcgacg acggtcggac tctgcgcggg
     2581 gaggatcccg cggaggcggc cgccgtactc tccgatctgc cggtgaccgc gctgggcgct
     2641 aactgcacag ttggccctgc agtcctggtg ggtgtggtca gtgagatggt gcgcggcacc
     2701 gagctgccgg tgtccgtcca acccaatgcc gggatcccgc aacggctcgg tggccaggtc
     2761 cgctacgccc gcaacgcggc ctacttcgcc gaagctgccc agcgattcgt gagcgcaggg
     2821 gccaccctgc tgggggggtg ctgcgggacg acaccagccc atgtgcgggc gatctcacag
     2881 gcggtcgcgg cactgccccc gatccagcga ccccctaccc tcggtgcgac gccgcgaccg
     2941 gcatacccgg ccggaacccg gctggcgtct ccggcccctg gatggccctg ggaacgcgag
     3001 ctggtggtgg ccgccgggtt gcaggcgccc aatggacctc aggtgccgga attcctcgag
     3061 cgggcgacca cactgcgggc agctggtgca ggggtactgg ccatcatcga aacggcaccg
     3121 ccggcggcgc ggatcagccc ggtcggcgct gccgtggtgg ttcgggagcg ggtgggcagt
     3181 gaggtgctgc tgccggtgga gaccgcggat cgcaaccttg ccgccctgca ggccgaccta
     3241 ctcggagcgc acgcgctggg tctgcggatg gtggtgtgcc gtaccggaag cccgcgggtg
     3301 gcgggcgact atcccatcgc ccctgggggt acgccctggg acgtcgactc ggtggggctc
     3361 atcgcgatgc tcggcgccct caacgatggc atcgactggc ggggtgtggc caccgcggag
     3421 cacacccggt tcgtgatcgg tgggactctg cacaccgctg ccggtgacgt ggcgaatgag
     3481 ctggacagag cggagtccaa gttccgggcc ggcgcgcatt tcctcgtcac cgacgtgatc
     3541 tatgacgtcg aggaggcaac cagagttctc ggcatgctga gggctcgtgg cgtgggattg
     3601 ccggtgctcg tgacgctcgc accgttcgcg gacgtccgga ccctgcaacg gttgtcctac
     3661 gaggttccgg aagggtcgat tccgcagtcg gcgctggccg ccgcctggcg ccaccgggac
     3721 aatcccgagc aggcggtcga gttctcggtg ggtgcggtgg agaagctgcg gcatctgatc
     3781 tccggagtca tggtccaggt gcccagcgga gtggacgagc aggcagtgcg gctggttacc
     3841 gctcttgccc ggctacgggg gagttcatga ccacctcggg gcgctccgag cgcgcacccg
     3901 cgtgggagca cggcactgcg ctgagcgggc tgtcccgcca gaattcgatc taccggcgga
     3961 ccatggcggt ctgcgacgag ctagccgacg cagcgctggg tggggccgac ccggtgcggc
     4021 tcaccgaggt cttcgcccgg ctggtcggta agcggatcgt gttgctggac atagcgttcc
     4081 ggctgcgggc tcaggccggc gggtcgggtc cgttgcgtgg gctgcgctgg aaccgcaccg
     4141 atcccagcgt tgatcggctg ctctgcgcgc tggaagccgc gcggcggccg ctacgaattc
     4201 ccgcgatccc cggctcgctg ctcgatcaag cctgcttggt ggctcccgta gtggtccgcg
     4261 agaccagcct gggttacctg ctggtgctcg atgaggtgac cgcgggaagc gggtacgggg
     4321 cccaacccga tgacgccgag ttcctcaccg tcacctacgc agccacactg ttcgcgttga
     4381 ccctggcgca tgagcagacc agtgcagagt tggacctgcg ctaccgcagc agcgtggtcg
     4441 acgctctggt ctccggtcat tttctggacg ctcaggacgc gcggcgcaag gcccgctcac
     4501 taggtctggg cgacgacgca ctattgcggg tcgcgatgct gcgcccggtg ccttctgccc
     4561 cggactgtgc ccccggggat cgggcccccg ggagttgggc ccagcaaatc gcgtcgatag
     4621 tcccgggcgc gggcgcagcg gtgcgagacg gcgcgctggt cgtgatcgtc cctggtgatc
     4681 cgagcgtcga tgcgctatca gcgctgtgca ggttgggtcc gggcgtcacc tgtgggctca
     4741 gcgaacaagt ggagtccccg gaactgctgc cccgcggggt gcggcaggcc gagcgctcaa
     4801 tcgacctcgg gctgcggctg ggtcgagcgg gccagccagt ccgttacgaa gaactgggca
     4861 tctaccggct gctgtgcacg atcggggata tgcggcagct gatgggattc gcccgcgacg
     4921 tgcttgggcc gttactggac tatgacaccg aacaccgggc tgagctggtg cgaaccctgt
     4981 ctgtgtacct gcaccatcac ggcagtcaca agcagtccgc ccggacgctg cacctgcaca
     5041 ccaacaccgt cgcctatcgg gtcgcgcgca tcgaagcgat cagccggctt gacctcggtg
     5101 atccggacga tcggctgatc gcccatgttg ctgtgaaaat catcgaagcg cagggtactg
     5161 ctgagtgaga gccggcaaga ccgacagctg gaggttgtgg aacgcatgct gaatccgggg
     5221 acggcattgg cgcgtgtcct cgtggacgaa ctcgcccgcg gcggggtcac cgaggcggtg
     5281 atcgctccgg gttcgcgatc cgcgccattg gcgatcgcct tcgccgagca tgccggaatc
     5341 cggctgcatg tccggatcga tgagcgttcg gccgctttcc tcgggctcgg cttggccaaa
     5401 gcatcaggca agccagtccc aattgtgtgc acctcgggca cggccgcggc caatttccat
     5461 cccgcggtgc tggaagcatc gcactcccag atgggacttg tcgtgctgac ctcagaccgg
     5521 ccgcctgaat tgcggggtac cggcgccaat cagactgccg atcagaccaa actgtatggg
     5581 gatgctgttc gcttcttcac cgagttcggt gttgccgaag cacgaccagg gatggtcgcc
     5641 tattggcgat cggtgatctg ccgggcgctg tcggctgcca ggggacaggg tcccgtgcat
     5701 ctcaacgtgc cattccggga gccgctgctg cctgacccca ccgatgaggc gtggccggaa
     5761 cccctggacg ggcgctccga ggggagacct tggacggacg acttacggtc tatggcagcg
     5821 attatcgatc cggttgtgac gctggcggat ctgcccgagc ggggaatcct cgtggcagga
     5881 gacggtgcag tggcgcctga gcgtgcggtg gcgttcgccg aagcggccgg atggccgatc
     5941 ttcgcggagc cgatgagcgg cgcccggttc ggcccgaacg ctgttacgac gtacagccaa
     6001 ctcgtggcaa ttcctgaagt ggccgacaga tatcgccctg atgcggtaat caccgtcggt
     6061 aaaccgggat tggccaaggc tctgctggct ctttatcccc aggttcccca ccttgtggtg
     6121 gacccgatcg cgcactgggc ggacccgact cgcacagcga gccgcgtaat ccatactctg
     6181 cccgtcctgg gctgcacacg cggttcatct gactggcttg ccgcatggca acgcatggaa
     6241 ttggtggctc gcgatgagct ggcgcgcatt ttgggccggg aacatgaact cagcgaactg
     6301 cggctggcct gggaaatggc tgacttggct ggtgataacg cactgttctt tgtcgggtcg
     6361 agcatgccgg ttcgttgcct cgatctggcc atgcgcgccg gggcggggcc ttgggtgctg
     6421 gccaatcggg gcgtgagcgg catcgatggg tgcgtctcga ccgcggtcgg tgcagctctg
     6481 gctcaccagg tcaacggcgg cggccccgcc gtcgccatgc ttggtgacct ctccgtgatt
     6541 cacgaccaga acggcctggt gatcgggccc ggcgagccgc gtccggatct gacgctcgtg
     6601 gtggtcaaca acgatggtgg cgggattttc tccttcctgc cctactcggg aatggcgaag
     6661 ttcgagaagc tcttcggcac tcctcacggg gtgaatttcg cccatacggc agcggcaagc
     6721 ggatgggatt accagcgaat aaccagcgct gacgagattg ctggcgccct gaaagagggc
     6781 ggtactcgcc tcgtcgaggt ccacaccgac cgtcagggca gtgccctgct ccacagacgc
     6841 gtgcgcgagg cagtctccgc ggcagtcctg acggttggcg gtctcgatgt cagtccgggc
     6901 tagggcctgg agccgtcatg ctcaggcttc tgggggcgta gcgagccgat caccagcagc
     6961 agtccgatga tcagcgccag ggcggcgagg acccatcggc tgtcgatgtc cggcagccag
     7021 gcgatgccac ccagcaaggt cgccgcggag attcctaacg cgcccaaccc agcgatcaga
     7081 ggcagcaggt ccggcccacg ctgcgggacc agcgcagccg cctcgtcgtg gtggctcggt
     7141 tctgggttcg gcatcgtcgg ttccgtctcg gtcatgatgt gcggtccacg tgtatctggc
     7201 cgacaccgga gtgcacgtcc aggatcagag tgccgccgcc ggggccgtcg gtcccggtat
     7261 cggtcagggt cacccgggat gggctgccgc cggagtcggt ccggccgagg caatcgacat
     7321 cccccacctg tgttcggcag ctcacctggg cgtcgacgtt cggcggtatg aatacatgag
     7381 tctcaccgac acccacggcg acattcgtct tcaccgtctg gccattggtc aattgcaggt
     7441 gggagaggtc cagatcgcca ttgccgaggg tgactgagta ttgttgctgc aactcggcgg
     7501 tggtcgtcgg gctccaatgg cgggtgccga cctgaaagtc agatgttggg gcggcgctga
     7561 ggatccaggt gagtagggcc agaggaacag cgatcgggac gagcccccgc ccgccgtgca
     7621 ggaacgagcc gatcaccagg ccgagcccga ccacacccag cagtatcgcg gcgatctggg
     7681 cggcggagag tccaggcccg aaggccagcg cgatcccgcc tgccagcagg gccagcccga
     7741 gggtaatcgg agtgatcttt gatccggccc accgtcgtgg ggtggtggcc gctggtggcg
     7801 ctgagggttc cgggagatcc caggcgaatg gtgccgcacc cagggggtcc cacgccggtg
     7861 gagcaggccg ctcgggatcg tcagtggtga caccaggcgc gcccggcgtt gcggggatgg
     7921 cctgcgccgt ctccggtgga tggcccgacg atggcgcagc agccggtggc gaccccggaa
     7981 tctcgcccaa cgccgcccgg gatcggtgta gcaacagcag cgcccctaag ccgacggcga
     8041 gcccgatgat gcctgaccca tgcccaccga gcaccgccgc ggtgaccgga atcagcagca
     8101 gcacgagcac gatcgtcagt actgctgaca tcgagctgcg gccccgtccg atcacgctct
     8161 ccgcacccga ggactggtca ccctgcgcgg gcagcaacag ccagcccagc aggtacagca
     8221 gcacccccgc gccaccggag cagatggtgg ccaccacgaa tgccactcga accagcaccg
     8281 ggtcgatgcc ataccgccgc gcgattgcgg ccgccactcc agcgatcttg cggtcgtcgg
     8341 ttcgccggcg cggcctggtg gcccagaagt cccgtgccgt atgctccagg ttgatctcgc
     8401 tcacgttgcc cagcttgacc tttccggacc gcccgcacca tcgggggtca ccctgaaccg
     8461 tccccgggtt ggcgatacca gggacgcccc tgatatccct ggcgcccctg ctcatgtgac
     8521 catgacaggc gtgagcacag ctgcagatca ggcgaccggg acccggtcgc ctgccgagcc
     8581 tgtggctagg ccggtgcagt tgagccgaca tcggtcggat cgggttatcg ctgggatatc
     8641 cagtggaatc gccgagcact taggcgtgcc ggtgttgtgg gttcggctga tcttcgtcgc
     8701 actcgccggt ctcggcggtg ccgggctgat cggttatgca ctgctctggg cgtttctgcc
     8761 ggcgaccgaa acaccggccc gggggccggg taatccgcgg gagcggcagc aggcggtcgg
     8821 gttggtcgtg ctgggagttg gcctggctat agcaggcgcg gcgctgggca ccgcgtgggg
     8881 tggctgggtg accggaccct taggcgtcgc cctggtcggt gcgggtgtgg tgtggcggga
     8941 ggccgacacc ggccagcgga cccgctggcg cagtggcgct ggggtggtct tcggcgggcg
     9001 gatggccctg ctacgggtgc tggccgggat tgcactggtg accagcggca tcgcggtctt
     9061 cctgctcaac cagggcaacc tgggtcaagc tcgcttcgcg ctgctggccg ccgccgcgac
     9121 cctggtcggg gtcgcggtgc tcaccgtgcc ctggtggttg cggctgatgc gcgcattggg
     9181 tgaggaacgc cgggctcgga tccgtaccga ggagcgggcc gagatcgccg cgcacctgca
     9241 tgactcggtg ctacagacgc tcgcgctgat ccagcagcag tccgattcgg cccgggaggt
     9301 gcgccggctc gcccgcgggc aggaacggga gcttcgcgcc tggctctacg gagcgcaggg
     9361 ctacgggcga gtgacgcagg cccgggccaa cggcgcaggc gctgcggaac cggcgtttgc
     9421 cgcgacactg cacgcagcgg ccggcgaggt ggaggacacc tacgcggtca gcatgcaggt
     9481 cgtggtcgtg ggtgactgcg tgctggaaga accgttgctc tcgctcgtgc agtccagccg
     9541 agaagcgatg gtcaacgcgg ccaaacacgc cggcgtctcc gaggtcagcg tctacgccga
     9601 ggttgagccg gggcaggtgc atgttttcgt ccgggaccgg ggcgccggct tcgatccggc
     9661 gaccgtggcc gctgaccggc acgggctggc cgactccatc cacggccgga tggaacgcca
     9721 cgggggtacg gtgagcgtgc gtaccgcgcc cggtgagggc accgaggtcc agctggcaat
     9781 cgctcgccgg aagggcggag aacagacgtg accggggata ccagcgagga tcgaaccatc
     9841 cgggttttcc tggtggatga ccacgtactg tttcgcaccg gggtgaaggc cgagctggac
     9901 agagccggcg ctgccgaccc ggatgtgcca ccggtcgtcg tggtcggcga gggcggttcc
     9961 gtggccgaag cggtcgccgg aatcgggcac ctacgacccg acgtggtgct cttggacgtc
    10021 cacatgcccg acggtggtgg cgcggaggta ctgcgccggg tccgtcctga gcgtcccgag
    10081 gtggtgttcc tcgccctgtc ggtatccgac gcggccgagg atgtgatcgc ggtgattcgg
    10141 ggcggcgccc gcgggtacgt gaccaagacg atctccgggc gtgagctggc cgacgcggtg
    10201 cgccgggtgc acggcggtga cccggtgttc tccccgcggc tggccggttt cgtccttgac
    10261 gccttcgccc aacgaccggg ggaggcgccg gtcagcgacc cggaggtgga tctgctcact
    10321 ccacgggagc gcgacgtgct gcggttgctg gcccgcggct acgcgtacaa ggagatcgct
    10381 tccgaactgt tcatctcgat caagacggtc gaaacccacg tctcctcggt gctacggaaa
    10441 actcagctct ccaaccgtta cgaactgtcc cgctgggcct ccgaccgccg cttggtatag
    10501 cgctcatgcg ctaccggccg acgcggtcgg ccacccttac cgagtttggg tgtgtgaagt
    10561 gacccagtcc tacaaccgcg ggttcacggt ccgtgagcac ctcaccgggg ctcggaaggt
    10621 gggccctggc ccgtggtgat cgtccgctga acccaggcac gtcgtgccac ctgccatgct
    10681 tccgccgatg tgccggtagg tctccacggg cacgaacccc atggcgcggt gcaggccgac
    10741 gctcgcgtcg ttcggtagcg tcatgcccgc gacggcggtg cggaagccgc gcctggccag
    10801 ccgggcgaac agggtgtcgt agagcgcgcc cagtgtagcc caccacgcgg ccggcagcgg
    10861 tgggtcgttc tcgaacgtga tcgcggtggc cagggggcga cgggcccgac gtgctggcgg
    10921 cctccggtgc tcctgggcgt cacctgtcgg cgagtgcgga ggtaccgatc ctcgacgcgg
    10981 actcaatcag cacccggcca tcgggtgcgt tgctcatggt gagccgatag cgttccagcg
    11041 ttcgcttccg gttcaccggc tcgaacacca ggcccaccag cacggtgttg ccttgcacgg
    11101 caaccggccc gcggatgctt acgccgttga tcccgttcca gaatttgtcg tagtgctgga
    11161 aaccctgggc gtgttcagcg gggcccaggt attgccacgc gaccgtggtg tcctcgggca
    11221 gcaggccgta gtacgtgcgg acggtctgct ccaactgctc tggtgggggt ttctgagcgg
    11281 gttgcggtga ctgggcgggt tgcggaagct ggggggattg gggcggttgg ggggcgaacg
    11341 tccgcgtggc cggcgccgcc agctgaccac gtccgccagt ggggccgaag atgggcacgg
    11401 tccccatcac ggacaacacc acggcgagta caacaaggca ggcagcggtc ccgaacagca
    11461 tcgcgggccg ccgccaccac gcgacccggg cggctcgcct gccccgagtg cgcggcgggc
    11521 tgccggtggg cacgcccacc ggcagcgaca tcgcttgggt gggggcagcg gtcctcgggc
    11581 gcggagacct gcccgcgggt gaggtgaaca gtggaagggc gtcggctgag gttgctccgt
    11641 gcgctgctat cgcgctgagt gccgctacca cgtcaggcat cgcgggacga gccgctggat
    11701 cgtcggccag caactgcatg agaacagtgg acaacgggcc ggcgcgcagg ggaggccgca
    11761 cccggccttc ggcaacggta cgcagtaggg ccagcgtgtt gtcgtccagt ccgaacggtg
    11821 gttcgccttc taccgctacg tagagcatcg agcccaggga gaacacgtcg ctcggggaac
    11881 cgggcagctc accgcgggcc acctcgggag cgaagtaggc cggtgtgccc gccaacatac
    11941 cggtgcgggt cacggtggcg tcccagctgg cccgggatat tccgaagtcg gtgatcttga
    12001 cggttccgtc ctggccgagc aggacattgc ccggcttgac gtcccggtgc acgatcccag
    12061 cctggtgggc tgcggtcagc gctgcagcga cctgccaacc gatcctggcc acctcgtgcg
    12121 gcggtagcgc cccgtgctcg gcgagaaccg tggccaggct gggcgcaggc aggtattcca
    12181 tcaccagcca cggcaccacc tgctccccag cgccggtgcc atgatcaagt gccacgtcat
    12241 agacgctgat ggcatgggga tgctgcaatc gagccgcgat gcggccctcg cgcatcgccc
    12301 tggcccttgc cctctccgcc tcttcctcgt ccagaccggg ctgcatgagc agttccttga
    12361 gcgccaccgt gcggtccagc cgctcgtcgt gcgctcgcca gaccacgccc atcgcgccgc
    12421 tgccgatctg ccggtccaaa cggtagcgac cggcgaccag tcgggtgtcg gcgttcacct
    12481 actacgttcc tcgctcaccg cctcaggcta gggtctgcgc ccctccggaa accgataccc
    12541 gcatgccgcg tcgctgtccg gtagctccgg cgggacgggc ggtgcgggcc tgactagctc
    12601 aaccgccgct gcggtagcgg gtccgggtgg tctgcagcgc ctggtaactg atcacaccgc
    12661 tgccagcgcc ggccaagatg gccaggatgt cggcaacggt gccgccggtg gagagcagga
    12721 gtgcgaggag agcgacggcg agggtgacgc cggcgaccgg aacccgaccg cggacgtact
    12781 ggctgatcgg atcgccgccg gctcgccggt tggccgccga ccccagcatc gccaggtatc
    12841 caccgtgagc tgccgcagcg agcaacccgg ccagtgcggc gaggacagca atcacattga
    12901 gcaccatgca gccagtgtgc ccttctccgg cgcgggccgt gcgatggcag gccgcgaggg
    12961 atctataccg gtcagtggcc cagccggccg cgtcccaacc gcagtagcag catcgccaac
    13021 tcgcggccct cctcgcctag tgcgcggtag cggtccagca cggccatctc acggccgtgc
    13081 accacccgcg ggccaccagc tgctcggcgg gcccgcccga tggcgtgaga aaccgcagtg
    13141 cgtcgctgca ccaaccgcag gatctccgcg tcgaggtagt cgatttcggt gcgcagggcg
    13201 gcgaggtcgg gcgctgaacc gtccgagacg gtgactgctg cctcgctggg cgcattccgg
    13261 gacatttcgg tggtctcctc atctgagtat cggagcccgc gttccctggc agcaacaacg
    13321 ccccgggtcc gtggactccg gggcgtcgtg gtggtctaaa tcgtgctttg cgccatcacg
    13381 ggaaccggat ccggtacccg taaaaaaagc gatggctcga cacgactcgg agtctgccat
    13441 ggtgtgcgct tccccgtcca cccgcttcta ggtgccgctc ccgtagcgcg gtcccggtat
    13501 gtcggtgtcc cccggtaccg tggtcgccac gatgagtact tccgttgtca ccggcccgcc
    13561 acgggatctg ctcgccgggc tcaacccgca gcaacgtctg gcggtggagc acgccggctc
    13621 cccgctgctc attgtcgcgg gcgccggatc cggcaagacc cgggtgctcg cccaccgcat
    13681 cgcctacctg ctggcccacc gcggcgttgc accgggtcag gtattggcga tcaccttcac
    13741 gaacaaggct gcggcggaga tgaggcagcg ggtcagcgcg ctggtcggtg ggcgatccgc
    13801 ggtgatgtgg gtgtcgacgt tccattccat gtgcgtgcgg atcctgcgcc gggaagctag
    13861 ccatctggcc ggcctgacgt cgaacttctc catctacgac gccgacgaca cccgccgcct
    13921 gactgccatg gtggcccggg acttcgacct ggatccgaag cgttaccccg cccgcaccct
    13981 ggctgcgaag atctccaacc tcaagaacga gctgctcgac ccaggcgcag cggccagtgc
    14041 agcgggaaac gactttgatc gccgggtggc ggagatctac gccggttacc agcagcggct
    14101 cgcggtatcc aatgcgctgg acttcgatga cctgatcatg cgcactgtgg agatgctgca
    14161 gaccctgccc gacgtggccg agcattaccg gcgccggttc cggcacatcc tggtcgatga
    14221 atatcaggac accaaccacg cgcaatacgt gctggtgcgc gaactggtgg gacctgggtc
    14281 ggccgagggg gccaccgaag ccgccgagct gtgcgtggtg ggtgacgccg accagtccat
    14341 ctacgctttc cggggcgcca ctatccgcaa catcgaggag ttcgagcggg atttcccgaa
    14401 cgcccggacg atcctgctgg agcagaacta ccggtccacc cagacgatcc tgtccgcggc
    14461 gaacgcggtg atctcccgca accccggccg ccgggataag cggctgtggt cggccgccgg
    14521 cgatggcgaa ccgatcgtcg gctacgtcgc cgataacgag cacgatgaag ccgcgttcgt
    14581 cgcctcggag atcgatcagc tggtcgacag cgacaaggcc aggttcggcg acgtggcggt
    14641 gttttaccgc acgaacaacg cctcccgggt gttcgaggag gtgttcatcc ggctgggact
    14701 gccttacaag gtggtcggcg gggtgcgctt ctacgagcgc cgcgaggtcc gcgatgccct
    14761 cgcctacctg cgggtgttgg acaaccccga ggacaccgtg tcgctgcgcc ggatcctcaa
    14821 cacaccgcgc cgggggatcg gggaccgtgc tgaggccgta gccgccacct atgctgaacg
    14881 ggagcggatc tccttcgccg cggcgctgcg ggccgccgcc gcaggccagg acatcccgtt
    14941 gctcaacccc aggtcccgca atgcgatcac ggcgttcgtc gtgatgatgg atgagctgag
    15001 ggagaaggtg gcggccgggg aggaagtcgc agacgtcctg gatgcggtgc tggagcggac
    15061 cgggtatcgg gccgagctgg acgcgtcgga ggatccgcag gatggctccc ggctggacaa
    15121 ccttactgag ctggtgacgg tggcgcggga gttcgcttct gaaggcgg
//
LOCUS       DASVXZ010000238         2313 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_998675, whole genome shotgun sequence.
ACCESSION   DASVXZ010000238 DASVXZ010000000
VERSION     DASVXZ010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998675"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..802
                     /locus_tag="VF788_04720"
     CDS             <1..802
                     /locus_tag="VF788_04720"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEX8933488.1"
                     /translation="TVVPNLAGLQRGAVAATLASADLKANIVEDHNDTIPGNTVIRSD
                     PAPGQRATRGSGITVVISLGHPVVPDLSAGATFDEAEQAIRQADLTLRTGPNSEEFDD
                     TIPAGSVIGLRPGPGTVLTVGAPVTVVISKGPAPATVPEVRGMRQADAIAVLRRAGLT
                     AQVQRQLDDQIAGGYAIGTDPRAGTGLARGASVILLVSTAPVVPNVVGMPVERARQIL
                     ADAGLNSTVSGSLGGLPFLGGFSDRVISQSPAAGQPVRPGATVALSTL"
     gene            complement(827..2215)
                     /locus_tag="VF788_04725"
     CDS             complement(827..2215)
                     /locus_tag="VF788_04725"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEX8933489.1"
                     /translation="MNWTVDVPIDTLPELPPLPADLRANLDAALSRPAAQQPGWPNPD
                     AVRNIRTVLESVPPITVPPEVDQLREHLGAVARGEAFLLQGGDCAETFADNTEPHLRG
                     NIRTLLQMAVVLTYGSSMPVVKVARVAGQYAKPRSASTDALGLPSYRGDMINSLVATP
                     AARVPDPSRMIRAYANAAAAMNLVRSLTLAGMADLHKVHDWNKDFVRRSPAGARYEAL
                     AGEIDRGLRFMSACGVEDSSLHSTEIYASHEALVLDYERAMLRMDCTGSTPRLYDLSA
                     HFLWVGDRTRALDGAHIAFAELLANPIGLKLGPTTTPDQAVEYVERLDPHGLPGRLTL
                     ISRMGAQRVRDLLPEIVQKVTATGHQVIWQCDPMHGNTIESSSGYKTRHFDWVVDEVQ
                     GFFEVHHALGTHPGGIHVELTGEDVTECLGGAQDISDADLSGRYETACDPRLNTQQAL
                     ELAFLVAEMLRS"
BASE COUNT          385 a          775 c          773 g          380 t
ORIGIN      
        1 gactgtggtg cctaaccttg cgggtctaca acgcggggca gtggcggcca cgctggcctc
       61 cgcagacctc aaagccaaca tcgttgagga ccacaacgac accatcccag gcaacacggt
      121 gatccgaagc gatcccgcgc cgggtcagcg ggctacccgt ggctcgggca tcaccgtggt
      181 gatctcactg gggcacccgg tggtacccga cctgtctgcg ggcgccacct tcgacgaggc
      241 cgagcaggcg atccggcaag cggatctgac tttgcggaca ggcccgaact ctgaggaatt
      301 cgatgacacc attccggcgg gctcggtgat cgggctacgg ccagggccag gcaccgtact
      361 cacggtcggc gcgccggtaa ctgtggtgat cagcaagggg ccggccccgg ccaccgtgcc
      421 agaggtccgg gggatgcgcc aggccgacgc aatcgctgtg ctgcgccggg ccggcctgac
      481 cgcacaggtg cagcgccagc ttgatgatca gatagccggt gggtacgcaa tcggcactga
      541 cccccgggct ggcaccggtc tggcccgcgg cgccagcgtc atcctgctgg tcagcacggc
      601 gccagtcgtt cccaacgtgg tcgggatgcc ggtcgagcgg gcccgtcaga ttctcgctga
      661 cgcgggactg aacagcacgg tcagcggctc actgggtgga ttaccgtttc tcggtggctt
      721 ctcggaccgg gtgatctccc aatcccccgc agccggccaa cctgttcgtc cgggcgcgac
      781 ggtggcgctc agcaccctgt gagagtgggc ctctccctgc ccagactcag gatctgagca
      841 tctcggcaac caggaacgcc aattccagcg cctgctgggt gttcaggcgg ggatcacacg
      901 cggtctcgta gcggccggac aggtcagcgt cggagatgtc ctgagcacca ccgaggcact
      961 cggtgacgtc ctcgccggtg agctccacat ggatgccccc gggatgggtg cccagcgcgt
     1021 ggtgcacctc gaagaagccc tggacctcgt cgaccaccca gtcgaagtgc ctcgtcttgt
     1081 agccactgga ggattcaatg gtgttgccgt gcatcggatc acactgccag atcacctggt
     1141 ggccggttgc ggtgaccttc tgcacgatct ccggtagcaa gtcccgaact cgctgcgctc
     1201 ccatccggga gatcaacgtg agccgacccg gcagcccgtg cgggtcgagc cgttcgacgt
     1261 attcgacggc ctgatccggc gtggtggtcg gtcccaactt gagcccgatg gggttggcca
     1321 gcagctcagc gaacgcgatg tgcgccccgt ccagtgcccg ggtacggtcc cccacccaca
     1381 ggaaatgcgc ggatagatca tagagcctgg gcgtcgagcc cgtgcagtcc atccggagca
     1441 tggcgcgctc gtaatcgagc accagcgcct catggctggc atagatctct gtggagtgca
     1501 gcgaggagtc ctccacgccg cacgccgaca tgaaccgcag gccacggtcg atctcgccgg
     1561 ccagcgcctc atagcgggcc ccggccggcg atcgacgaac gaaatcctta ttccagtcgt
     1621 gcaccttgtg caggtcagcc ataccggcca gggttagcga ccgcaccagg ttcatcgccg
     1681 cagcggcgtt cgcgtaagcc ctgatcatcc gcgatggatc gggcacccgg gctgccgggg
     1741 tggccaccag cgagttgatc atatcgccgc ggtaggacgg caagccgagc gcgtcggtcg
     1801 acgcggaccg cggcttggcg tactgcccgg ctacccgggc caccttcacc accggcatgc
     1861 tcgatccata ggtgagcacc accgccatct gcaacagcgt gcggatgttg ccccgcaggt
     1921 gcggctcggt gttgtcggcg aaggtctcgg cgcagtcccc gccctgcagc aggaacgcct
     1981 caccgcgagc caccgccccg aggtgttccc gcagctggtc cacttcgggg ggcacggtga
     2041 tcggcgggac actctccagc acggtgcgga tattgcgcac cgcatccggg ttgggccagc
     2101 caggttgctg cgcggcaggt cgggatagcg cggcatcgag gttggctcgc agatcagcgg
     2161 gcagcggcgg caactccggc agcgtgtcga tcggaacgtc cacggtccag ttcacggtgc
     2221 ttgagcgtat ggggtgcagt gcagtaccgg ttcagtgggt tcaccgacgc cgtcggttgc
     2281 gtacgaccgt cagccgaaga agacctcggc ctc
//
LOCUS       DASVXZ010000239         2958 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_25580, whole genome shotgun sequence.
ACCESSION   DASVXZ010000239 DASVXZ010000000
VERSION     DASVXZ010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25580"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1294
                     /locus_tag="VF788_04730"
     CDS             <1..1294
                     /locus_tag="VF788_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEX8933490.1"
                     /translation="LATLTRLRDLGNTLIVVEHDEETIRTSDWVVDIGPGAGEHGGQI
                     VYSGPFPGLEQHDTSITGAYLSGRCSIPVPGVRRLVDRSRRLTVVGAREHNLRGIDVS
                     FPLGCLISVTGVSGSGKSTLVNDILATVLANRLNGARQVPGRHTRVNGLEHVDKLVKV
                     DQSPIGRTPRSNPATYTGVFDRIRKLFAATTEAKVRGYQPGRFSFNVKGGRCEACAGD
                     GTIKIEMNFLPDVYVPCEVCSGARYNRETLEVHYKGKTIAEVLDMPIEEAAAFFEPIS
                     AIHRHLKTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTG
                     LHFEDIRKLLGVINGLADKGNTVIVIEHNLDVIKSSDWVVDMGPEGGAAGGTVIAEGT
                     PEQVAAIDTSYTGQFLRAVVNAQPVTSPRPRRATVAAG"
     gene            1732..2310
                     /gene="infC"
                     /locus_tag="VF788_04735"
     CDS             1732..2310
                     /gene="infC"
                     /locus_tag="VF788_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEX8933491.1"
                     /translation="MTVETRINERIRVPEVRLVGPNGEQVGIVRIEDALRLAQEADLD
                     LVEVAAQARPPVCKLMDFGKFKYETAQKARESRRNQQMTVIKEQKLRPKIDAHDYETK
                     KRHVVRFLDAGHKVKVTIMFRGREQSRPELGFRLLQRLSEDVADLGFVETSAKQDGRN
                     MTMVLAPHRNKPRGPKADRTAAEPASTADAAE"
     gene            2427..2621
                     /gene="rpmI"
                     /locus_tag="VF788_04740"
     CDS             2427..2621
                     /gene="rpmI"
                     /locus_tag="VF788_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009951172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEX8933492.1"
                     /translation="MPKNKTHSGTAKRVKLSATGKLLRQRAGKRHLLEKKSSRITRRL
                     TGVVEVATPDASRIRKLLGR"
     gene            2696..>2958
                     /gene="rplT"
                     /locus_tag="VF788_04745"
     CDS             2696..>2958
                     /gene="rplT"
                     /locus_tag="VF788_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEX8933493.1"
                     /translation="MARVKRAVNAQKKRRSTLEAASGYRGQRSRLYRKAKEQILHSLQ
                     YAYRDRRARKGDFRHLWITRINAAARQNGMTYNRLVQGLRIAGV"
BASE COUNT          549 a          962 c          982 g          465 t
ORIGIN      
        1 attggcgacg ctgaccagat tgcgggatct gggcaacaca ctgatcgtgg tcgaacacga
       61 tgaggaaacc atccggacgt ctgattgggt ggtggatatc ggtccggggg ccggtgagca
      121 cggcggacag atcgtctaca gcggtccatt ccccgggctg gagcagcacg acacttcgat
      181 caccggtgcg tacctgtccg gcaggtgcag cattccggtg ccgggggtcc ggcgtctggt
      241 ggaccggtcc cgcagattga cggtggtcgg ggcgcgcgag cacaacctgc gcggtatcga
      301 tgtctccttc cccctcggtt gcctgatctc cgtcaccggg gtatccggat cgggcaagtc
      361 gacattggtc aacgacatcc tggcgaccgt gctggccaac cggctcaacg gtgcccgtca
      421 ggtacccggc cggcacaccc gggtcaacgg gctcgagcac gtcgacaagc tggtgaaggt
      481 ggatcagtca ccgatcgggc ggacccctcg ctcgaacccg gcgacctata ccggtgtgtt
      541 cgaccggatc cgcaagctgt tcgccgccac caccgaggcg aaagtacgcg gttaccagcc
      601 cgggcggttc tccttcaacg tcaagggtgg tcgctgcgag gcctgcgccg gggacggcac
      661 catcaagatc gagatgaact tcctacccga cgtctatgtc ccgtgcgagg tgtgcagcgg
      721 cgcccggtac aaccgggaaa cccttgaggt gcactacaag ggcaagacca tcgctgaggt
      781 gctcgatatg cccatcgagg aggcggcggc gttcttcgag ccgatctcgg cgatccaccg
      841 ccatctcaag acgctggtgg atgtcgggtt gggttacgtc cggcttgggc aacctgcgcc
      901 gacgctgtcc ggtggcgaag cgcagcgcgt caagctcgcc agcgagctgc agaaacgatc
      961 caccggccgc accgtgtacg tgctcgatga gcccaccacc ggcctgcact tcgaggacat
     1021 ccgcaagctg ctcggcgtga tcaacgggct ggccgacaag ggcaatactg tcatcgtgat
     1081 cgagcacaac ctcgatgtga tcaagtcatc ggactgggtg gtcgacatgg ggcccgaagg
     1141 aggcgcggcc ggcggcaccg tgatcgcgga ggggacacct gagcaggtcg ccgcgatcga
     1201 caccagttac accggccagt tcctgcgcgc cgtcgtcaac gcccagcccg tgacctcccc
     1261 gcggcctcgc cgggccaccg tcgccgctgg ctgagctgtc gctgtaccaa tccgaaggcg
     1321 atacgcggct cgacggcctt gctgagcgcg ggcgtcggtc accgtgacct cgacatggtt
     1381 cgacggtttg cgtgcctggc agcagcaggt cacgcatcct cctatgacgt gtctgtgacc
     1441 tatgagggtc tgttaccctg tcggtgcgac cagcttccgc tccggcggag gtggcaagtg
     1501 gagcccgctc ccacccgaac cgccgtaagg cggccgggtc cggtcctgga atccctaagc
     1561 gggttccggt gttgacgtta cgtgttgaca gccagcacgc ggcgtcgatc ggtcggatct
     1621 gcgggccccg cacgtcatga tgcgtgcggg gccacgtggt gtccggggtg tgtcctcagg
     1681 gagcggccca ctggctcggt tgcccgcggg tagcacgact gaggaggcca catcaccgtc
     1741 gagacacgca tcaacgaacg cattcgcgtt cccgaggtca ggttagttgg tccgaatggc
     1801 gagcaggtcg gcatagtccg catcgaggat gcgcttcgac tagctcagga agcggacctc
     1861 gacctggtcg aggttgcggc gcaggcccgg ccaccggtct gcaaactgat ggacttcggc
     1921 aagttcaagt acgagaccgc gcagaaggct cgtgagtccc gccgcaacca gcagatgacg
     1981 gttatcaagg agcaaaagct ccgccccaag atcgatgcgc acgactacga gacgaagaag
     2041 cgccacgtag tgcggttcct cgacgcgggg cacaaagtga aggtcaccat tatgttccgg
     2101 ggtcgcgagc agtcccggcc ggagttgggc ttccggctgc tgcagcggct ctccgaggac
     2161 gtcgctgacc tcggcttcgt cgagacctcc gccaaacagg acggccggaa catgacgatg
     2221 gtgctggccc cgcaccgcaa caagccgcgg gggcccaagg ccgatcggac cgcggcggag
     2281 ccggcgagta ccgccgacgc ggcagagtaa cgctcgctgc tagcaacgtc ggtggcccgc
     2341 agcgggtcac cgtgaaaatg cggtggcccg gcagggccac cgcacagtca gcgccgccat
     2401 gcccggtggc aaaaacgagg acggacatgc cgaagaacaa gacccatagt ggtaccgcga
     2461 agcgcgtcaa gctctccgct accggcaagt tgctgcggca gcgcgcaggc aagcgccacc
     2521 tgctggagaa gaagtcctcc aggatcaccc gccgactgac cggggtcgtc gaggtggcga
     2581 ccccagacgc ttcgcggatc cgcaagctgc tcggtcgctg accgactgcg caccgccgaa
     2641 cctcgacccc gaccctgggc ggttacgccg cccccgagat cgacaggaca aatcagtggc
     2701 acgcgtgaag cgagcggtca acgcccaaaa gaagcgccgc agcaccctgg aggccgccag
     2761 cggctaccgt ggccagcgct ctcggctcta ccgcaaggcc aaggaacaga tcctccactc
     2821 gttgcagtac gcctaccgtg accggcgggc tcgcaagggt gacttccggc acctctggat
     2881 cacccggatc aacgctgcgg cgcggcagaa cgggatgacc tacaaccggc tcgtgcaggg
     2941 attacgcatt gcgggcgt
//
LOCUS       DASVXZ010000240         8213 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_653135, whole genome shotgun sequence.
ACCESSION   DASVXZ010000240 DASVXZ010000000
VERSION     DASVXZ010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8213
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653135"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..1708
                     /locus_tag="VF788_04750"
     CDS             152..1708
                     /locus_tag="VF788_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8933494.1"
                     /translation="MPSPPVVPDRPAGLTIPVAALIGLLSTAAGLATGHLVGGLISPN
                     ASPFLAVGGSAIDLTPTWLKDFAVRSFGSYDKFVLLSGMAVVIGLLGIAAGLLSRRSR
                     LPGLVLIVVLGAIASVAVLCRPTAGSIDVLAPLVALIVSAGTFVVLHHLGHLSQLQTG
                     DDAAGLPRRTLLAGSVAVATGAGIAAVGGQLLAGRSGVDASRKAVGRILPVAAPPIPS
                     GADFAVDGSPTFITSNRDFYRVDVNLTLPRLRAEDWRLRIHGMVEREITLNWRDLTSR
                     KLIERPVTMTCVSNEVGGPYISTANFTGALVADILAETGIQRGAEQAFTTSVDGWTCG
                     TPIATLTDPGRQAMLVIGMNGEPLPVEHGFPVRMIVPGLYGFVSGTKWITDMELTTFD
                     ARRAYWLQRGWGQRAPIKTMSRIDSPGPFERVSPDTPITGVAWAQTRGIDKVEVRLDH
                     GEWRTAELSTEVNADTWRMFRLRGRWTPGAHVAEVRATDRTGYTQTTDRAAPIPDGAT
                     GWHSVQFTVQ"
     gene            1840..2523
                     /locus_tag="VF788_04755"
     CDS             1840..2523
                     /locus_tag="VF788_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEX8933495.1"
                     /translation="MRKIQRLAAVGAMAALAAVVGACSSAQTPAPAEQSPSPSAEATP
                     SAEATAPTGSGVTKISDIFGPACDQVPKDGPGSPQGMVNDPVATAASHNPLLTTLVKA
                     VTAANLVDTLNSAPELTVFAPADPAFQALEAQHPGILKELTTAPDVASPNSKLSKILT
                     YHVVGKRYDAAGIVEAGSLDSLEGAKIKIAGTAAAPTVNGATVLCGNIPTKNATVFVI
                     GQVLSLPAS"
     gene            3087..3812
                     /locus_tag="VF788_04760"
     CDS             3087..3812
                     /locus_tag="VF788_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013222414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA];
                     GO_process: GO:0051775 - response to redox state [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEX8933496.1"
                     /translation="MTVHQHGRYGTSVDDLASRAVPDAAVGRLAVYLRVLSSMIEQGV
                     TTMSSEELAGAAGVNSATLRKDLSYVGSYGTRGVGYDTARLVEHIERLLGLTRHHSVA
                     VVGIGNLGHALANYGGFPDRGFPVTALFDLEEDLIGVPVGGLPVDHVDGIPAVCAERE
                     VTIGVICTPAAAAQWVCDLLVAGGVRCILNFAPVVLQVPDDVEVRRVDLAVELQILSF
                     YQARRSSRRGPVAEPSDPIAVGR"
     gene            3809..5212
                     /locus_tag="VF788_04765"
     CDS             3809..5212
                     /locus_tag="VF788_04765"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003081930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEX8933497.1"
                     /translation="MSLVVVGLSHRSAPVGVLERVATSVADPGKVQAELLEREHVAEA
                     LLLSTCNRVEIYAVVTTFHGGLADITDVLAHQSAIALDELSDHLYVHYAAAGVEHLFS
                     VAAGLDSMVVGEPQILGQLRTAYAGAEQAGTIGRTLHEVVQQALRVGKRIHAETGIDS
                     AGASVVSEALAAAADELSAGGGAGLTGRRVLVLGAGAMGGLAAAQLRRARVAEIVLAN
                     RTQASAQRLAALCTAEGTPARAVGLDGVASALPGVDLVICCTGAIGAVISVDQVTDAV
                     GVTQATDAVGVNQVTDAGRAPLVVCDLGLPRNVEPGVGEVPGVILLDLGTVAQRLEQR
                     GSGSNAVSAAQCLVSQEVRDYLAAQRAAEVTPTVAALRRRAAEVVDAELLRLEGRLPA
                     LDTTVRDELARTVRRVVDKLLHAPTVRVKQLAEAGGGQAYADALRELFELDPQAAAAI
                     AAPIRPPSSADPSGTPS"
     gene            5209..6171
                     /gene="hemC"
                     /locus_tag="VF788_04770"
     CDS             5209..6171
                     /gene="hemC"
                     /locus_tag="VF788_04770"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEX8933498.1"
                     /translation="MTTLKLGTRGSPLALAQTGWVAQRLRAAGVAAELIPVGTAGDGY
                     SALRTALVTGEVDVAVHSYKDLPIEADPRVVIAAVPERADARDALVARDGMVLGELPA
                     GAVLGTGSPRRGRQLHALGLGLQVVPIRGNVDSRISRVFAGELDGVVIAAAGLARLGR
                     LDVATELLDPLQMLPAPGQGALACECRVDDLDTEHFLGTVLDDAGARAAVTAERALLA
                     AVVDGCDAAVGALADVVEDLDDDGRVVLRLFLRGAAATADGDLLRSSATAPYSFGEDS
                     VAPHSFGELTDAENLGREVAAELLDLLAGALDGRPSGARPGPTA"
     gene            6191..7720
                     /locus_tag="VF788_04775"
     CDS             6191..7720
                     /locus_tag="VF788_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional uroporphyrinogen-III
                     C-methyltransferase/uroporphyrinogen-III synthase"
                     /protein_id="HEX8933499.1"
                     /translation="MSRVCKTTGRIAFVGAGPGDAGMLTVRAQHLLCGAELVVTDPDV
                     PAEVYAPAALSAEVRPAVGEPGEVARDLIAEAKGGRAVVRLVSGDPLTADAVVAEAQA
                     VARSSVPFEVVPGVPAATAVPAFAGVPLGSGHTEADVRAGVDWAVLAAVPGPLVLHAT
                     ASHLAEAAAALVEHGLAAQTPVAITAAGTTPAQQTVETTLGSLSSDVGELGGPLVITV
                     GSVVEQRAKLSWWESRALYGWKVLVPRTKEQAGAMSERLAVHGAVPVEVPTISVEPPR
                     SPAQMERAVKGLVDGRYQWVVFTSTNAVRAVWDKFGEFGLDARAFAGVKIACVGEATA
                     ERVRSMGIVPELVPSGEQSSEGLLADFPPFDDILDPVDRVLLPRADIATETLAAGLRD
                     GGWEIDDVTAYRTVRAAPPPAETREMIKTGGFDAVCFTSSSTVRNLVGIAGKPHTRTL
                     VACIGPKTAETAREFGLRVDVQPEHATVPALVDALAEHAARLRAEGALPPPRKTKRAR
                     R"
     gene            7788..>8213
                     /locus_tag="VF788_04780"
     CDS             7788..>8213
                     /locus_tag="VF788_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEX8933500.1"
                     /translation="MYPTSRLRRLRATPAMRGLVRETTVSAHQLVLPVFVKQGATEPV
                     PIASMPGVVQHSAESLRKAAAGAVAAGVGGIMLFGVPAGRDATGFGATDPDGVLNAAL
                     RGVRAEVGDDIVIMADTCLDEFTDHGHCGLLDAAGRVDND"
BASE COUNT         1227 a         2633 c         2950 g         1403 t
ORIGIN      
        1 gatccttgtc gacgggcggg aacacggctt ctggaccgtt caggagcggc gcttgcgggc
       61 ggcactcagt gcataaccac catcacgatc tggtttgtcg ttgaacctgt cagggcagga
      121 cggcgaacgg cgtggcgtga cttccttgcg gatgccctcc ccgccggtgg tccccgatag
      181 gccggccggt ttgaccattc ccgtggcggc gctgatcggg ctgctctcca cggcggcagg
      241 gttggcgacc gggcatctgg tgggcggact catctcgccg aacgcgtcgc cgttcctcgc
      301 ggtgggcggc agcgcgatcg atctcacgcc gacctggctc aaagacttcg cggtccgcag
      361 cttcggaagt tatgacaagt tcgtcctgct atccggcatg gctgtggtga tcggcttgct
      421 cggaatcgcc gccgggctgc tgtctcgacg ttcccgccta cctggactcg tgctgatcgt
      481 ggtgctcggt gcgatcgcca gtgtcgcagt gctctgccgc cccaccgcgg gctccattga
      541 tgtcttggcc ccgctggttg cgctgatcgt cagcgctggg acgttcgtgg tcttgcacca
      601 cctgggccac ctcagccagc tgcaaaccgg ggacgacgcg gccggactgc cacgtcgtac
      661 gctgcttgcg gggtcggtcg cggtggccac gggtgcaggg atcgcagcgg ttggtggcca
      721 gcttctggcc gggcgcagtg gtgtggatgc ctctcgcaag gcggtggggc ggatcctgcc
      781 ggtggccgca ccgcctatcc cgtccggagc ggatttcgcc gttgacggat cgccgacctt
      841 catcacctca aaccgggact tctaccgggt ggatgtcaac ctcacgctgc cgcggctgcg
      901 cgcagaagac tggcggctgc gtatccacgg gatggtcgag cgcgagatca ccctcaactg
      961 gcgcgatctg acctcacgga agctgatcga acgtcccgtg acgatgacct gtgtgtccaa
     1021 cgaggtgggg ggcccctaca tctccaccgc caacttcacc ggcgcgctcg ttgcggacat
     1081 cctggccgaa accggcatcc agcggggcgc cgagcaggcg ttcacgacga gcgtcgacgg
     1141 gtggacctgt ggcacgccca tcgcgacgct gacggatccg ggtaggcagg ccatgctggt
     1201 gatcgggatg aacggcgagc ccctgccggt cgagcacggc tttcccgtcc ggatgatcgt
     1261 ccctgggttg tacggcttcg tatccgggac caagtggatc accgatatgg agctcaccac
     1321 cttcgacgcc cggcgggcct actggttgca gcgtggctgg ggacagcggg cgccgatcaa
     1381 gacgatgtcc cggatcgaca gccccggtcc cttcgaacgg gtcagccccg acaccccgat
     1441 caccggcgtc gcgtgggcgc agaccagggg gatcgacaag gtcgaggtgc gcctcgatca
     1501 cggtgagtgg cgaaccgcgg agttgtcgac tgaggtgaat gcggatactt ggcggatgtt
     1561 ccgactgcga ggccggtgga cacctggtgc gcatgtcgcc gaggttcgcg caacggacag
     1621 aaccggatac acccagacca cggatcgggc tgcacccatc ccggatggag cgaccggatg
     1681 gcactcggta cagttcaccg tccaatagga cacgcctagg gcgtcacaat ttgtgtccta
     1741 ttcgtaatct gcagcggtga acccgatctt gtggattacc gaagtaatac acgcgagacc
     1801 cggaccagcc gggcagcccg atgaggagtt gaataccagt tgaggaagat ccagcgactg
     1861 gccgcggtcg gcgcgatggc cgctttggcc gccgtggttg gcgcatgtag cagcgcccag
     1921 acgccggccc ccgcagagca gtccccttcg ccgagcgctg aggcgacgcc cagtgcggag
     1981 gcgacggcgc ccactggcag tggcgtcacc aagatcagtg acatcttcgg acccgcttgc
     2041 gatcaggtac ccaaggacgg ccccggctcg cctcagggca tggtcaacga tccggtggcc
     2101 accgccgcca gccacaatcc gttgctgacc acactggtca aggcggtgac cgccgcgaat
     2161 ctggtcgaca ccctgaatag cgcccctgag ctcaccgtgt tcgcgccggc tgacccggca
     2221 ttccaagctc tggaggctca gcacccgggc attctcaagg agctgaccac cgctccggac
     2281 gtggcctcgc ccaacagcaa gctctccaag atcttgacct accacgtggt cggtaagcgt
     2341 tacgacgccg ccgggattgt cgaggcgggt tcgctggaca gcctggaagg cgccaagatc
     2401 aagatcgctg gcaccgcggc ggcaccgacc gtgaacggcg cgacggtgtt gtgcggcaac
     2461 attcccacca agaatgccac cgtcttcgtc attgggcagg tgctttcgct gccggcttcc
     2521 taaggctgct gacgtcttcg ggtacgaagg caaatgatcc accgatcagg ggcggttccg
     2581 cgatggaacc gcccctgatg tatgtcgtaa acattccggc tgtcgctctg cagatttcgt
     2641 aacggttccg tatgcgtcgg gcagctaatc gtttcgatca ccgaggggtg cgcaaactcc
     2701 ttattgggtc tcggcttggg gctaaatcgg ccgcgtagat cactgcgagt aattgcacgt
     2761 gaggctgtgg agcagcccgg acaggacgat taaggcttga gacaccgtcg tccagtgcgc
     2821 aggccgcgcc gacccctgct tacggcgctg accaaagcgg tgcaggcggc gaacctgagt
     2881 gacacgctga acgggtgctc caacgctgac tgtgttcgcc ccggccgggc ggcttcgtta
     2941 cggagtcgcc ctaagggcgt gccggggttc accaagatcg cgactttgtt cctgagttca
     3001 caagcggcta acgtgaacgc ctggccggac aacggtgccc agccccagac ccggttcgcc
     3061 agcgtgagat ccgaaaggaa gcacccgtga cggtccatca gcacggcagg tacggcacgt
     3121 cggtcgacga cctggcctcc cgcgccgtgc ccgatgctgc cgtgggccgc ctcgcggtct
     3181 acctgcgggt actttcctcc atgatcgagc aaggcgtcac cacgatgtcc agtgaggaac
     3241 tggccggtgc ggctggagtg aactcagcga cgctgcgcaa agacctgtcc tatgtgggtt
     3301 cctacggcac ccgcggggtg ggttacgaca cagcgcggct ggtggaacac atcgagcgtc
     3361 tcctcgggct cacccggcac cacagcgtcg ccgtggtggg catcgggaac ctcggccatg
     3421 cattggccaa ctacggcggt ttccccgatc gcggtttccc ggtcacggcg ctgttcgatc
     3481 tcgaggagga cctgatcgga gtcccggtcg gcgggctgcc cgtcgaccac gtcgacggca
     3541 tccccgcggt atgcgccgag cgagaggtga ccatcggagt gatctgtacg cccgcagccg
     3601 ccgcgcaatg ggtctgcgac ctgctggtgg ctgggggtgt ccgatgcatt ctcaacttcg
     3661 ccccggttgt gttgcaggtg ccggacgatg tcgaggttcg ccgggtagac ctcgcggtcg
     3721 agctgcagat cctctcgttc taccaagccc gccggtccag caggcgtggg ccggtagctg
     3781 agccgtctga tccgattgcg gtgggccgat gagccttgtg gtcgtcgggt tgtcccaccg
     3841 cagcgcaccg gttggcgtgc tggagcgggt ggcaacctcc gtggcggacc ccggcaaggt
     3901 gcaggccgag ctgctggaac gcgagcacgt cgccgaggcc ctgctgctgt ccacctgcaa
     3961 ccgcgtggag atctacgcgg tggtgacgac cttccatgga gggctcgccg atatcaccga
     4021 cgtcctggcg caccagtcgg cgattgcgct cgatgagctg tccgatcacc tctacgtgca
     4081 ctatgcggcg gctggcgtgg agcacctgtt ctcggtcgcg gccgggcttg actcgatggt
     4141 cgtcggcgag ccgcagatcc tcggtcagct gcgcaccgcg tacgccggcg ccgaacaggc
     4201 tggcaccatt ggccggactc tgcacgaggt ggtgcagcag gccctgcggg taggcaagcg
     4261 gatccatgcc gagactggta tcgattccgc tggggcgtcg gtggtctccg aggcactagc
     4321 cgccgcggcg gacgagctca gcgctggcgg cggcgcaggt ctcaccggcc gccgggtgct
     4381 ggtgcttggc gctggcgcga tgggtggtct cgccgcggct cagctgcgcc gagccagggt
     4441 ggccgagatc gtgctggcga accgcacgca ggccagcgcg cagcggctgg ctgccctctg
     4501 caccgcggag ggcaccccag cccgagcggt aggcctggac ggtgtggcca gtgcgctgcc
     4561 aggcgtggac ctggtgatct gctgcaccgg tgcaatcggc gctgtgatca gcgtcgacca
     4621 agttaccgac gccgtgggcg tcactcaggc aaccgacgcc gtgggcgtca atcaggtgac
     4681 cgatgctggt cgggcgccgc tggtggtgtg tgacttgggg ctgccccgca acgtcgagcc
     4741 cggcgtgggt gaggttcccg gcgtcatcct gttagatctc ggcaccgtgg cgcagcggct
     4801 ggaacaacgc ggctcaggat ccaatgcggt cagcgccgcg caatgcctgg tctcgcagga
     4861 ggttcgcgat tacctggctg cccagcgcgc agcggaggtc actccgacgg ttgcggcgct
     4921 gcgcaggcga gcggccgagg tggtggacgc ggagctgttg cggctggagg gccgtctgcc
     4981 ggcactggat accacggtgc gcgatgaact ggcccggacc gtacgtcgcg tggtcgacaa
     5041 gctgttgcac gccccgacgg tgcgggtcaa gcagctcgcc gaggccggcg gagggcaggc
     5101 ctacgcggac gcattgcggg aactcttcga actcgacccg caggccgctg ccgcgatcgc
     5161 cgctcctatc cggccgccat ccagcgccga tccctcggga accccgtcat gaccacgctg
     5221 aagctgggaa ctcggggtag tccgctggcg ctcgcccaga ccggctgggt ggcacaacgc
     5281 ctgcgtgccg cgggagttgc ggcggagctt atcccggtgg ggaccgccgg tgatggctac
     5341 tcggcgttgc gcaccgcgtt ggtaacgggt gaggtcgatg tggcggtgca ctcctacaag
     5401 gatctcccga ttgaagcgga tcctcgggtg gtcatcgccg ctgttccgga gcgcgcggat
     5461 gctcgtgacg cgctggtggc ccgggacggg atggtgctgg gcgagttgcc ggccggggcg
     5521 gtgctgggca ccggctcgcc acggcgcggc aggcagctgc atgcgctggg cctagggctg
     5581 caggtggtgc cgatccgcgg caacgtcgac tcgcggatat ctcgggtgtt cgccggggag
     5641 cttgacgggg tggtgatcgc tgccgccggg ctggctcggc tcggccggct cgatgtggcc
     5701 accgagctgc tcgacccgct gcagatgttg ccagcgcccg ggcagggagc gctggcttgt
     5761 gagtgccggg tcgacgactt ggacaccgag cactttctgg gtacggtgct cgatgacgca
     5821 ggggcgcgcg ctgcagtcac tgccgagcgg gcgttgctcg ccgcggtagt agacggctgc
     5881 gacgccgcgg tcggggcgct cgccgatgtc gtcgaggatc tggacgacga tggtcgagtc
     5941 gtgctgcgac tgttccttcg aggagccgcg gctactgcgg acggtgacct gctccgatcg
     6001 tccgccactg cgccctattc ctttggggag gattccgttg cgccccattc ctttggggag
     6061 ctgaccgatg ccgagaacct cggccgcgag gttgcggccg agttgctgga cctgcttgcc
     6121 ggcgcgctgg atgggagacc cagcggtgcg cgaccgggtc cgacggcctg aatgggaaat
     6181 gagtaggtaa atgagccgtg tttgcaagac caccggacgg atcgccttcg tcggcgctgg
     6241 tcccggtgat gccgggatgc tcactgtgcg agcgcagcac ctgctgtgcg gcgccgagct
     6301 cgtggtgacc gaccctgacg tacccgcaga ggtgtacgca ccggctgccc tgagcgcgga
     6361 ggtacgcccg gctgtggggg aacccggtga ggtcgccagg gatctgatcg ccgaggccaa
     6421 gggcggacgg gccgtagtgc gcctggtttc cggagacccg ctgactgcgg acgcggtggt
     6481 cgccgaggcg caggcggttg cccgtagttc ggtgccgttc gaagtggtgc ccggagtgcc
     6541 cgcggctacc gcggtgccgg cgtttgccgg ggtgccgctg ggctcgggtc acactgaagc
     6601 tgacgtgcgc gccggcgtcg attgggcggt actggccgcg gtgccgggcc cactcgtgct
     6661 gcacgccacg gcatcgcacc tggcagaggc ggccgcggca ctggtcgagc acggcctggc
     6721 cgcacagacc ccggtggcga tcaccgccgc tggcactaca cccgcccagc agaccgtgga
     6781 aaccacacta gggtcgttga gcagcgacgt tggtgagctc ggtgggccac tggtgattac
     6841 cgtgggctca gtggtggagc agcgcgcgaa gctgtcctgg tgggagtccc gggccctgta
     6901 tggctggaag gtgctggtgc cgcggaccaa agagcaggcc ggcgcgatga gcgagcggct
     6961 cgcggtgcac ggggcggtcc cggtggaggt cccgacgatc tcggtggagc cgccgcggtc
     7021 gccggcgcag atggagcggg cggtcaaggg cctggtcgac ggccgttatc agtgggtggt
     7081 attcacgtcc acgaacgcgg tccgagcggt ctgggacaag tttggtgagt tcgggctgga
     7141 cgctcgtgcg ttcgccggcg tgaagatcgc ctgcgtgggc gaggccaccg cggagcgagt
     7201 gcgctcgatg ggaatcgtcc cggagctggt tccctccgga gagcagtcct ccgaggggct
     7261 gctggccgat ttcccgccct tcgacgacat cctcgacccg gtcgaccggg tgctgctgcc
     7321 acgcgcggac atcgcgaccg agacgctggc cgccgggtta cgcgatgggg gctgggagat
     7381 cgacgacgtg acggcctacc gcacggtgcg ggcggcccct ccgcctgccg agacccgtga
     7441 gatgatcaag acgggtggct tcgacgcggt gtgcttcacc tcgtcgtcca ccgtgcggaa
     7501 cctcgtcggc atcgcgggca agccgcacac ccgcaccctc gtcgcctgca tcggcccgaa
     7561 gaccgcggag accgcgcggg agttcggcct gcgggtggac gtccagcccg agcacgccac
     7621 cgtgcccgcg ctggtcgacg cgctcgccga gcacgccgcc cggctgcgtg ccgagggcgc
     7681 cctgccgccg ccgcgcaaga cgaagcgcgc ccgccgctga tgtggataac ccgtgagtgg
     7741 cgatgcgagc tatcactcgc atcgccactc acggggccgg aggtctgatg tacccgacga
     7801 gccggttgcg gcggttgcgt gcgacgcccg ctatgcgggg gttggtacgg gagacgacgg
     7861 tgtccgcgca ccagttggtg ctgccggtgt tcgtcaagca gggggccacc gaaccggtgc
     7921 cgattgcgtc catgccgggc gtcgtccagc acagcgcgga atcgctgcgc aaggctgcgg
     7981 cgggagcggt ggccgccggg gtgggcggga tcatgctgtt cggtgtgcct gccggcaggg
     8041 atgccaccgg cttcggcgcc accgatcccg acggcgtgct caacgccgct ctgcgtggcg
     8101 tgcgcgccga ggtcggcgac gacatcgtga tcatggctga cacgtgcctg gacgagttca
     8161 ccgatcatgg gcactgcggc ttgctcgatg cggccgggcg ggtggacaac gac
//
LOCUS       DASVXZ010000241         2673 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1550244, whole genome shotgun sequence.
ACCESSION   DASVXZ010000241 DASVXZ010000000
VERSION     DASVXZ010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1550244"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1097)
                     /locus_tag="VF788_04785"
     CDS             complement(<1..1097)
                     /locus_tag="VF788_04785"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:NF015022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0051991 -
                     UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-
                     glutamyl-meso-2,
                     6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol
                     4-beta-N-acetylglucosaminlytransferase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HEX8933501.1"
                     /translation="MTLDQSLLSLAARKCPLRLIVTGGGTGGHTYPAITTIRATRHLL
                     QGAGVGLEVLYVGSAAGLEARVAEQEQLPFQAVSTGKLRRSVNPLRMISTENLRDVGR
                     LARGLVEARRVVRAFRPDVVLSTGGYVAVPVGLAAKAVNAPLLVHEQTTRLGLANRVL
                     VRRATAIALSSQTSAELLPATLRGRAVVTGNPIRVELLGGEARRGVEALGWAGWDARL
                     PTVYVTGGAQGSVQINRLVESVLEWLLPRANVVHQCGSSSLAALRRRAEQLPAELAGR
                     YRVIEFVGAELRDVQALADVVVSRSGAGTLAELTALGKPSVLIPLIPTGGDEQEHNAR
                     YLQQAGAAHALLGTSPTAEDLTRALDGLIGDP"
     gene            complement(1153..2142)
                     /locus_tag="VF788_04790"
     CDS             complement(1153..2142)
                     /locus_tag="VF788_04790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933502.1"
                     /translation="MSVGSAALLGASLITAGVASAGSPCSRVIHNVDEARAGITVAAP
                     GDTLCFAGVDLADVDLTMVRPGTANAPIRLISDGQTTVHQLHILADYVVIQGFTIVGG
                     GELLLEGTGIVAQKNTVRDTAHGGIICASCIDSAIEANTVLHAATTGISISGQRITVR
                     ENLVSATVPADDGDADGVRFFGTGHRIISNVIRDIPARGSAHPDCFQTFDTGRPATFD
                     IEIVGNTCQKVAENCLLATGDESGNGEAPADTRSITFIGNTCATSGEQSVNLRHWPHA
                     DMRKNHFSGSNLKRGILISAGSTGCTTKDNTTERDVSPVEIDDSSRPGFNSPF"
     gene            complement(2251..>2673)
                     /locus_tag="VF788_04795"
     CDS             complement(2251..>2673)
                     /locus_tag="VF788_04795"
                     /inference="COORDINATES: protein motif:HMM:NF018434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HEX8933503.1"
                     /translation="AGVRDPDELGPSSLSPNVRVERFIPFSLLLPFVDVYVTNGGFGG
                     VQYALSNGVPIVVAGKAGSDLEIGNRVAYTGAGVNLRTSTPTPQQVAGAVQTILRDSR
                     YRAAAEAIQAELNRHDAPQEAALLLEQLAETKAPVLRR"
BASE COUNT          473 a          879 c          887 g          434 t
ORIGIN      
        1 ggatcaccga tcagcccgtc gagggcccgg gtcagatcct ccgcggtcgg tgaagtgccg
       61 agcagggcgt gggctgctcc agcctgctga aggtagcggg cgttgtgttc ctgctcgtcg
      121 ccaccggtcg ggatcagcgg gatgagcacc gagggcttac ccaacgcggt gagctccgct
      181 aacgtgcccg cacctgagcg ggacaccacc acgtcggcca gggcttgtac gtcccgtagc
      241 tccgcgccga cgaactcgat cacccggtag cggccggcca gctcggcggg tagctgctcc
      301 gcgcggcgcc gcagagcagc cagtgagctg gagccgcact ggtgcaccac gttcgcccga
      361 ggcaacagcc actccagtac cgactcgacg agacggttga tctgcacgct cccctgcgcg
      421 ccacccgtca catagacggt gggcaggcgg gcgtcccaac cggcccagcc cagcgcctcg
      481 acaccgcggc gggcctcgcc tcccagcagc tcgacgcgga tcggattgcc cgtgaccact
      541 gctcgcccgc gcagcgtcgc cggcaagagc tccgcggatg tctgcgagga aagtgcgatc
      601 gcggtagcgc ggcgcacgag cacccggttc gccaggccca gcctggtggt ctgctcgtgt
      661 accagcagcg gagcattgac cgccttcgcc gccagcccga ccgggactgc cacgtacccg
      721 ccggtggaca gcaccacatc gggccggaat gcgcgcacca ctcgacgggc ctccacgagt
      781 cctcgggcca ggcggccgac atcgcgcaga ttctccgtag agatcatccg tagcgggttc
      841 acggagcgcc gcaacttgcc ggtggacacc gcctgaaagg gcaactgttc ctgctcggcg
      901 acgcgagcct ccaacccagc agccgagccg acgtagagta cctcgagccc tacgccggca
      961 ccctgcagaa ggtgccgagt ggctcggatc gtagtgatcg ccgggtacgt gtgcccgccg
     1021 gtgcctccgc cggtgacaat caggcgcagc gggcacttcc gggcagcgag gctgagcaag
     1081 ctctgatcca gcgtcatggt gagtgcgggg ctccggtggg cgggcggcag gtcggggcca
     1141 acgtactcgt ggtcagaacg ggctgttgaa gcccggccgc gacgagtcgt cgatctccac
     1201 gggggaaacg tcgcgctcgg tagtgttgtc tttcgtggta caaccggtcg agccggcgga
     1261 tatcaggatc ccacgcttga ggttcgaccc ggagaagtgg ttcttgcgca tgtcggcgtg
     1321 gggccagtgg cgcagattca cgctctgttc acctgaggtg gcgcaggtat tgccgatgaa
     1381 agtgatcgac cgcgtgtcag ccggagcctc accgttgccg ctctcgtcac cggtggctag
     1441 caggcagttc tccgcgactt tctggcaggt gttacccacg atctcgatat cgaaagtggc
     1501 gggacggccg gtgtcgaacg tctggaagca atcggggtga gcagagcctc tggccgggat
     1561 gtcccggatc acattgctga tgatccggtg cccggtgccg aaaaaccgca caccgtcggc
     1621 gtcaccatca tcggcgggca ccgtggcgct caccaggttc tcccgcacag tgattcgctg
     1681 cccgctgatg gagatgccgg tcgtggcggc atgtagcacg gtattggctt cgatagctga
     1741 gtcgatgcac gaagcacaga tgatcccacc gtgcgcagtg tcacgaaccg tgttcttctg
     1801 agcgacgata ccggttccct ccagcagtaa ctcgccgcca ccaacgatcg tgaaaccctg
     1861 gatgacgaca tagtcagcaa ggatgtgcag ctggtggacg gtcgtctgcc catccgagat
     1921 aagcctgatc ggcgcgttag cggtcccggg cctgaccatg gtcagatcca catcggcgag
     1981 gtcgacaccg gcgaagcaca gcgtgtcccc cggggcggcc acggtgatcc cggcgcgtgc
     2041 ctcgtcaacg ttgtgaatca ctcgggaaca gggggaaccg gccgacgcga cgccagcagt
     2101 gataagactt gcaccgagca gcgcagcaga accgaccgac atcctgcggg cgaccgtaat
     2161 catcgtccac aagagtagct ctcagtgacg caacctaccc tccgtagcca gcggacacgc
     2221 ggcaacacat ctactgtggc gaggcggtgc tcagcgccgc agcacgggcg cctttgtctc
     2281 agccagctgt tcgaggagaa gcgcggcttc ctggggtgcg tcgtggcggt tgagttctgc
     2341 ctggatcgct tcggctgcgg cgcgataacg agaatcacga agtatggtct gcacggcgcc
     2401 agcgacttgc tggggagtcg gggtgctggt gcgcaggttg actcccgcgc cggtgtaggc
     2461 aacccggttg ccgatctcca ggtcggaccc ggccttcccc gcgaccacga tcggtactcc
     2521 gttggacagc gcatactgca ccccaccgaa gccgccgttg gtcacgtaga cgtccacgaa
     2581 gggcaacaac aggctgaacg ggatgaagcg ctccacccgc acattcggcg acagcgagga
     2641 gggcccgagt tcatcgggat ctcggacccc tgc
//
LOCUS       DASVXZ010000242        11129 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1728873, whole genome shotgun sequence.
ACCESSION   DASVXZ010000242 DASVXZ010000000
VERSION     DASVXZ010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 11129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11129
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1728873"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..1943
                     /locus_tag="VF788_04800"
     CDS             225..1943
                     /locus_tag="VF788_04800"
                     /EC_number="1.1.1.38"
                     /inference="COORDINATES: protein motif:HMM:NF010052.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HEX8933504.1"
                     /translation="MHQAPYKLIHTVDGMVARIHARGSAVLASPTINRGTAFTIEERE
                     ALELTGRLPTAVSTLDGQVRRVYGQYRAQADDLRRWVYLANLRDRNEVLFYRLLCEHI
                     AEMLPVVYTPTVGLAIERFSHEFRRPRGVFLSLDRPEDVEASFRNCGMGADDVDLIVA
                     TDSEGVLGIGDQGVGGIEIAIGKLAVYTAAAGIHPHRVLPVVLDMGTDNVALLNDETY
                     LGARHGRVRDQRYDDLIEAYVTAATKFFPNAMLHWEDFGAGNARRILNKYADQVCTFN
                     DDLQGTAAVVLAAVFSAVRAAGSRIRDQRVVIHGAGTAGLGIADMTRDVMIREGLSPT
                     EATARFYALGSQGLLVDDAPSLRDFQVPYARTAAEVAGWSTGAGTGITLANVVSAVRP
                     TMLIGTSTQTGAFTEAIVRDMAAHTERPIIMPLSNPTSKCEALPENLIQWTGGRALVA
                     TGSPFPPVAHGGITHHIAQANNALVFPGLGLGVTVARARRINQPMIAAAADAVAQLSD
                     ANAPGAPLLPPVEDLRTVSAAVAVAVAVSAAQEGLAQVPVDDPVLQVHQAMWWPEYPI
                     IELADR"
     gene            complement(1965..2183)
                     /locus_tag="VF788_04805"
     CDS             complement(1965..2183)
                     /locus_tag="VF788_04805"
                     /inference="COORDINATES: protein motif:HMM:NF039788.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6458 family protein"
                     /protein_id="HEX8933505.1"
                     /translation="MRFSGSIFLIAVGLVLALAVNVSISGVDLQLVGWILAGVGALAL
                     LLSLVIYWRSRSVVVERPPVASDEYPPP"
     gene            complement(2357..3898)
                     /locus_tag="VF788_04810"
     CDS             complement(2357..3898)
                     /locus_tag="VF788_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX8933506.1"
                     /translation="MAPPPDHDSDSPFTTEGRSAPPTFVPTSVHRPTVDPDAAQAFGR
                     PPGVPGAFADHPDAAREGWTTAPAPPEALAIAFGKPSESAELLQRPPGRNGVRPSGAL
                     ESQDDFWPRDAVRDPWRDPCATAVPGAPAVGPGESGGDEPSRQGARLSLAEVLFGGRL
                     SNRALAVLAALALLVGGAGGLVGRVTADVGTLLHDPGATLTQVQPAIQRPAGSVAAVA
                     GRVLPAVVSLEFRVGDQGGFGSGVVIDGQGYLLTNNHVVAPAASIPQATLEAVFIDGT
                     RLPARIVGRDPKTDLAVVKVEVANPTVAQLGRSSTLRQGDPVIAIGSPLGLAGTVTSG
                     IVSAVDRPVRLEAEGGQGNAVIDAIQTDAAINPGNSGGALVDAAGAVVGINTAIRTLG
                     ANEGGGSIGLGFAIPIDTARAIAQELIRTGHYQHADLGINAASVTDGKSDGARVQNVQ
                     QGSAAAEAGILENDVITKVGNRIIASADTLTVAVRERAIGERVPIALVRDGRPLVVTV
                     TLKSD"
     gene            complement(3972..4394)
                     /locus_tag="VF788_04815"
     CDS             complement(3972..4394)
                     /locus_tag="VF788_04815"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEX8933507.1"
                     /translation="MTDLRGRTFSELLAGVNAAQHLAVDAVVAFVDGELAPAARDRAA
                     AHLMMCPSCAAEVAAQRQARSVVRSAQCPPVPADLLAALRDIPHTADLPDPPPRWVAS
                     GEGMVVDVADPNRLSAGPLGASPRWGTGPSAFGRWMGR"
     gene            complement(4404..5021)
                     /gene="sigE"
                     /locus_tag="VF788_04820"
     CDS             complement(4404..5021)
                     /gene="sigE"
                     /locus_tag="VF788_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigE"
                     /protein_id="HEX8933508.1"
                     /translation="MATQTRFRDSTAPQQAISVVPADEETGPAQAWVPPSWDQVVREH
                     ADRVYRLAYRLSGNPHDAEDLTQETFIRVFRSLGSYKPGTFEGWLHRITTNLFLDMVR
                     RRARLRMEGLPEDTDRLAGGGLSPEQVYTATHLDPDLQQALDDLAPEFRAAVVLCDVE
                     GLSYEEIGATLGVKLGTVRSRIHRGRQALKAALERRRGGERARAE"
     gene            5296..5961
                     /locus_tag="VF788_04825"
     CDS             5296..5961
                     /locus_tag="VF788_04825"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009072906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEX8933509.1"
                     /translation="MRSTGSAGGPSAPSGSTVRQYVESFVCEDEILTAVRERGQELGC
                     PPIGPAGGAALRFLASALAARAVVEVGTGAGTSGLCLLRGMPSHGVLTSIDVEPEHQR
                     VARLAFTEAGFRPSRYRLIMGQALDVLPRLTDGGYDLVFVDAAIPEYPRYLEIGARLL
                     RPGGVIAFDNALWNGTLADRAHGDPSSAALRALGAMVRDNDALTPLMLPLGDGLLLAL
                     RAR"
     gene            complement(5978..6880)
                     /locus_tag="VF788_04830"
     CDS             complement(5978..6880)
                     /locus_tag="VF788_04830"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8933510.1"
                     /translation="MTAQDEKRSLTDAIVGYYDETWLDYRLLWLNPDNLAVHFGYTDQ
                     STRSHTDALKNMNRVLADRVQIQSGERVLDAGCGVGGSSFWLAKERDAEVVGITLAAG
                     QVRKARSYAARRRLTDRVHFEVADFTDTPFPDASFDIVWAVESLCHAPRKAAFYQEAA
                     RLLRPGGRVVVADFVRAGRPLDPTGERLLHEWLTGWAVPDIDTPDEHIAHLDAAGFSK
                     AQLDDVTVHTRPSLRRLYRMAYWTYPLAVLGHRKGIRSAVQHGNVIASIRQYQALRHG
                     AWFYSILSATKPAASPQPGPGTDL"
     gene            complement(6976..7548)
                     /locus_tag="VF788_04835"
     CDS             complement(6976..7548)
                     /locus_tag="VF788_04835"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEX8933511.1"
                     /translation="MQSDSAPWWAVLSSACAPVLLIGGWQLAAARQPGGFDPVTQTIS
                     ALAASGATDRWIMTTALAGVGVCHTITAAGLTTAALPGRLLLGTGGAATVLLAGFPLL
                     ATGESPVHIAAASVAFSTLSLWPALARWCDGEPRPGTSLIAASGLLGLLGWFGLEYLS
                     DGSRIGLSERFLAGAQALWPLAAVLLARRR"
     gene            complement(7538..8755)
                     /gene="glgC"
                     /locus_tag="VF788_04840"
     CDS             complement(7538..8755)
                     /gene="glgC"
                     /locus_tag="VF788_04840"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEX8933512.1"
                     /translation="MKGQPHVLGIVLAGGEGKRLWPLTADRAKPAVPFGGNYRLVDFV
                     LSNLVNAGYIRICVLTQYKSHSLDRHITTTWRLSSMLSQYITPVPAQQRLGPRWYTGS
                     ADAIFQSLNLVYDEAPEYIVVFGADHVYRMDPSQMLEQHIASGAGVTVAGIRVPREQA
                     SAFGCIGADASGRITEFLEKPARPPGTPDDPDMTFASMGNYVFTTKLLVSALRADGAN
                     QDSDHDMGGDVIPMLVDAGEAAVYDFADNVVPGATDRDRGYWRDVGTLDTYYDAHMDL
                     VSVHPVFNLYNQAWPIRTATPPLPPAKFVQGGTAQESIVGSGSIVSAALVTNSVLSSD
                     VVVEAGAHVEGSVLLPGVRVGKGAIVRRAILDKNVVIPDGAQVGVDPDLDRERYTVSG
                     GDVVVLGKGAHAE"
     gene            8890..10044
                     /gene="glgA"
                     /locus_tag="VF788_04845"
     CDS             8890..10044
                     /gene="glgA"
                     /locus_tag="VF788_04845"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003796502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004373 - glycogen (starch) synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase"
                     /protein_id="HEX8933513.1"
                     /translation="MRIAVLTREYPPEVYGGAGVHVAHLVPELRKRCEVEVHCFGAPR
                     ATVSNHAVTPSLAASNQALQTLSVNLTMADAVGGVELVHSHTWYANMAGHLARALHGI
                     PHVITAHSLEPRRPWKAEQLGGGYRVSSWVERTAYEHADAIIAVSDGMRADVLDCYPT
                     VHPERVHVVRNGIDADTYRPVPETDALRRFGADPTRPIVAFVGRITRQKGVGHLLAAA
                     HHIDHGAQLLLCAGAPDTSEIETEARAAVAELSTARPGVIWVPDMLPIEDIRQVLSAA
                     TVFICPSVYEPLGIVNLEAMACGTAVVASSVGGIPEVVDDGVTGFLVPYDEHDPEAFH
                     RGLADRVNELLADPDRVAAMGQAGRKRAITEFSWPAVAERTMHLYQTLLS"
     gene            10155..10607
                     /locus_tag="VF788_04850"
     CDS             10155..10607
                     /locus_tag="VF788_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933514.1"
                     /translation="MGVCEVDVDKSVVLRGWRWTTAVIDDRLHLVKLKIRPTDLCGVF
                     RGSDAVTSGVLTADQLRGPYFRRLYRDVYLPAGMPITHSLRCEGAALVLPTAAVLTGR
                     SAATLRGIPLARATDPVEIVMPLETRIARRSGLDVGAATSLLKNSHRG"
     gene            10628..11110
                     /locus_tag="VF788_04855"
     CDS             10628..11110
                     /locus_tag="VF788_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933515.1"
                     /translation="MRTSLDLLLDRTLPDAVADLDAVLRAGLVDLGALQRMVTERHDR
                     GIVAARRAAELADSRAESRPESRLRVYLVLDGLEPVPQYLVCDWQGVVARVDLGFPYE
                     RLAVEYDGEWHGEWRQISADRERLNRLQAAGWDVLFVTARQLRDPAAVVASVRTAFAR
                     "
BASE COUNT         1873 a         3788 c         3626 g         1842 t
ORIGIN      
        1 catttccaga tgctggtcgg acggggccag ctcgggattg gcggctacct tggatgactc
       61 cgggccacgg cggagaacct gcggtcaccc ctcgttccca gttcggcgac gccgtgacca
      121 gttgctcgcg aacgctgaag accgacccgc cgtggcatcg gtgacaccta cgggcggtgt
      181 ccggattagc ggctccgctg gtcacggacg acaggagagg tgccatgcac caggcgccat
      241 acaagctgat tcacaccgtg gacggcatgg ttgcgcgtat tcacgcaagg ggcagcgccg
      301 tgctggccag tccgacgatc aaccgcggga cagcgttcac catcgaagag cgcgaggcct
      361 tggagctgac cggccgactg cccaccgcgg tcagcacctt ggacgggcag gtgcggcggg
      421 tctatggcca gtaccgcgcg caggccgatg atctgcgtcg ctgggtatac ctggccaatc
      481 tgcgggaccg caacgaggtg ctgttctacc ggctgctgtg cgagcacatc gcggagatgc
      541 tgccggtggt ctacacgccg acggtcgggc tagcgatcga gcggttcagc cacgagttcc
      601 gtcgcccgcg tggagtgttc ttgtccctcg accggcccga ggatgtggag gcgtccttcc
      661 gcaactgtgg catgggcgcc gacgacgtcg acctgatcgt ggcgaccgac tcggagggcg
      721 tcctgggcat cggcgaccag ggcgtgggcg gcattgagat cgcgatcggc aagctcgcgg
      781 tctacaccgc cgccgcgggt atccacccac accgggtgct cccggtggtg ctggacatgg
      841 gtactgacaa cgtggcgctt ctcaacgacg agacatacct gggcgcccgg cacggccggg
      901 tccgcgacca gcgctatgac gatctcatcg aggcatacgt taccgctgcc acgaagttct
      961 tcccgaacgc gatgctgcac tgggaggact tcggggccgg caacgcgcgg cgcatcctga
     1021 acaagtacgc cgaccaggtg tgcaccttca acgatgacct gcagggcacc gccgcggtcg
     1081 tgctggccgc agtgttctcc gccgtccggg cggcggggag ccggatacgc gaccagcggg
     1141 tggtcatcca cggcgccggc accgccgggc tgggcatcgc cgacatgacc cgcgatgtca
     1201 tgatccgcga aggactgtct ccaaccgagg ccaccgcgcg cttctacgcc ctgggcagcc
     1261 aaggcctgct ggtcgacgat gcacccagct tgcgtgactt ccaggtcccc tacgcacgga
     1321 ccgcggccga ggtggccggc tggtccactg gtgcgggcac tggaattacc cttgccaacg
     1381 tcgtgtcagc cgtgcggccc accatgctca tcggcacctc gacgcagacc ggcgcgttca
     1441 ccgaagccat cgtcagagac atggcggcgc acaccgagcg gccgatcatc atgccactgt
     1501 ccaacccaac gtcgaagtgc gaagcgctgc ccgaaaatct gatccagtgg acaggcggcc
     1561 gcgcgttggt cgccaccggc agcccgttcc ccccggtcgc ccacggcggg atcacccatc
     1621 acatcgccca ggccaacaac gccctggtct tccccggact cggcctcggc gtcacggttg
     1681 cccgtgcccg acggatcaac caacccatga tcgccgcagc cgcggatgcc gttgcccaat
     1741 tgtcggacgc taacgctccc ggagcgccgc tgctcccacc ggtcgaggac ctgcgcaccg
     1801 tctccgccgc cgtggctgtg gcggtcgcgg tctccgcggc ccaggaggga ttggcgcagg
     1861 tgcctgtgga cgaccccgtc ctgcaggtgc accaggccat gtggtggccc gagtacccga
     1921 tcatcgagct cgcggacagg tgatgcgatg aacccgagga tcgcctacgg cggggggtac
     1981 tcgtccgagg ccacgggcgg ccgctccacg acgacggatc ggctgcgcca gtagatcacc
     2041 agacttagca gcagtgccag cgcacccact cccgcgagga tccagccgac cagctgcagg
     2101 tcgacgccgg agatgctgac gttgacagcc agcgccagga cgagtccgac cgcaatgagg
     2161 aagatgctcc cgctgaatct catgaaccct ccgatgtgcc tgccggcgaa gctggcgctg
     2221 tgggggcgag ccagtagatc gtcaccccac aaatcgggtt ccaaatctgg gtcgttacta
     2281 cctgcgatgg aaacacacgc tcacagacct gacgtgaccg aagcacaagc attgtgttgt
     2341 gaggtgagcg accggatcag tcagacttca gtgtgacggt caccaccagg ggtcgcccgt
     2401 cgcgaaccag cgcaattggc acccgttcgc cgattgctcg ttcgcgaaca gcgacggtca
     2461 gcgtatcggc gctagcgatg atccggttgc cgaccttggt gatcacatcg ttctccagga
     2521 tgccggcctc agcggcggcg ctgccctgct gcacgttctg cactcgtgca ccatcggact
     2581 tgccgtcggt caccgacgcg gcgttgatgc ccagatcggc gtgctggtag tgcccggtgc
     2641 ggatcagttc ctgcgcgatc gctcgggcgg tgtcgatcgg gattgcgaag ccgagcccga
     2701 tcgagccccc gccttcgttc gcgcccagcg tccggatcgc ggtgttgatg cccaccaccg
     2761 cgcctgcggc atccaccagc gcgccaccgg aattgcctgg gttgatcgcc gcgtcggtct
     2821 gtatcgcatc gatcactgcg ttgccctggc caccctcggc ctccagacgc accggccggt
     2881 ctactgcgct gacgatgccg ctcgtcaccg tgccggcgag gcccagcggg gaaccgatgg
     2941 cgatgaccgg gtcaccctgt ctcagggtcg atgaacggcc tagctgcgcc accgtggggt
     3001 tggcgacctc caccttcacc acggcgaggt ccgtcttggg atctcggccc acgattcgcg
     3061 ccggcagccg ggtgccgtca atgaataccg cttccagggt ggcctgcggg atgctcgccg
     3121 ccggggctac cacatggttg ttggtcaaca ggtagccctg accgtcgatc accacgccgg
     3181 aaccgaagcc gccctgatcg ccgacccgga attccaagga caccacagcg ggtagcaccc
     3241 gaccggccac cgccgccacc gagccggccg gtcgctggat cgccggctgc acctgcgtca
     3301 gcgtggcgcc cggatcgtgc aacagcgtgc cgacgtctgc ggtgacccgg cccaccagcc
     3361 cgccggctcc cccgaccaac agcgcgagcg ccgccagtac ggccaatgcc cggttactca
     3421 gccggccacc gaagagcacc tccgccaggc tgagcctggc cccttgacgt gacggttcat
     3481 cgccgccgga ctcgcctggc cccaccgctg gggcgcccgg caccgccgtg gcgcacggat
     3541 cacgccacgg atcccgcacg gcgtcccgcg gccagaagtc atcctggctc tccaacgctc
     3601 ctgaagggcg cacaccgttt ctccccggcg gccgctgcag cagctcagcg gattccgacg
     3661 gcttaccaaa cgcgatcgcc agtgcttccg gtggcgccgg ggcggtggtc catccttccc
     3721 tggccgcatc cggatgatcg gcaaaggctc ccggcacgcc gggggggcga ccgaacgcct
     3781 gcgccgcatc aggatccacc gttggccggt gcaccgacgt cgggacgaac gtcggcggcg
     3841 ctgagcgccc ttccgtcgtg aaaggggaat cggagtcgtg atcgggcggc ggggccatgg
     3901 tctcctgagt caaggcgtgc gctaacgatc atccagtctg cctactggcc ggtgaaatgt
     3961 gcgtagcgct gttaccgccc catccaacga ccgaacgcgg aaggaccggt accccaacgg
     4021 gggcttgcac ccagcggtcc ggccgacagc cggttcgggt ccgctacgtc gacaaccatg
     4081 ccctccccac tcgcgaccca ccttggtggc gggtcgggca gatcagcagt gtgcgggatg
     4141 tcgcgcaacg ccgcgagcaa gtctgcgggc accggggggc attgtgccga acgcaccacg
     4201 ctgcgagcct gccgttgcgc ggcaacttct gccgcacagg acgggcacat catgaggtgg
     4261 gcggcagcac ggtcacgagc agctggagcc aactcgccgt cgacgaaagc gactactgca
     4321 tccacggcta ggtgctgcgc tgcgttgacg ccggccagta gttcggagaa ggtgcggccg
     4381 cgcaggtcgg tcatccaacc cccttactca gccctcgctc gttcgccgcc gcgccgtctt
     4441 tccaacgccg ccttgagcgc ctgcctgccg cggtgaatcc ggctgcgcac ggtcccgagt
     4501 ttcaccccga gcgtggcacc gatctcctcg taggacagac cctctacatc acagagtacg
     4561 acagctgcgc ggaactccgg ggcgaggtcg tccaatgcct gttgcagatc gggatcgaga
     4621 tgggtcgcgg tgtacacctg ttccgggctg aggccaccgc cggcaagccg gtcggtgtcc
     4681 tcaggcaaac cttccatccg cagccgcgca cgtcgccgga ccatgtccag gaacaggttc
     4741 gtggtgatcc ggtgcagcca gccctcgaac gtgccaggct tgtaggaacc caggctgcgg
     4801 aatacccgga taaacgtctc ctgggtcaaa tcctcggcgt cgtgcggatt gccggagagg
     4861 cggtaggcca accggtacac ccggtcggcg tgctcgcgca ccacctgatc ccacgacggc
     4921 ggcacccatg cttgggctgg cccagtctcc tcgtcagcag ggacgacaga gatggcctgc
     4981 tggggagcgg tagagtcgcg aaagcgagtt tgggtagcca tcggctgggt ttcccacctc
     5041 ccggtggctg tagtactcgg tggcatggac tagcacggac aggtagtgca acgctggggc
     5101 agctctcgat gtttcgctgc ttatcatggc ggctcaccgt gtgccctgga taagggacag
     5161 ctaagaagat cctgagagat cgccggccga cccggcgatc ggacctaggt cacctgcctc
     5221 gtccggcacg ccagatccgc tgatccggcg cggcgccgcc gagacggtgc aggcagcggc
     5281 gctacgctgc gcaacgtgag gtctaccggc agcgcaggcg gcccgtccgc cccctccggc
     5341 agcacggtgc gccaatacgt ggagagcttc gtctgcgaag acgagatact caccgcggtg
     5401 cgtgaacgcg ggcaagaatt gggctgcccg ccaatcgggc cagccggtgg cgctgcactg
     5461 cggttcctgg ccagtgcgtt ggccgcgcgg gcggtggtcg aggtcggtac cggcgctggc
     5521 accagcggac tgtgcctgct gcgtggaatg ccttctcacg gagtactcac ctcaatcgac
     5581 gtcgaacccg agcaccagcg tgtcgcccgg ctggcgttca ccgaagcagg tttccggccc
     5641 tctcgctacc ggctgatcat gggtcaagcc ctggacgtat tgccccggct caccgacggc
     5701 ggttatgacc tggtgttcgt cgacgccgcg atacccgagt acccccgtta tctcgagatc
     5761 ggtgcccggt tgttacgccc cggcggggtg atcgcattcg acaacgcgtt atggaatggc
     5821 acgttggctg atcgggcaca cggagatccg tcctctgctg ccctgcgggc cctcggtgcc
     5881 atggtccgcg acaacgacgc cctcacgccc ttgatgctcc ccttaggcga cggtctgctc
     5941 ctcgccctac gcgcccgctg agcaccccgc cggcgtctca caagtccgtt cccggcccag
     6001 gctgcgggct cgcggctggc ttggtggcgg agaggatact gtagaaccac gcaccgtggc
     6061 ggagtgcttg gtactggcgt atcgaggcga tcacgttgcc gtgctggacc gcggagcgaa
     6121 tccccttgcg gtggccgagc accgccagcg gataggtcca gtacgccatg cgatacaacc
     6181 gccgtagtga tgggcgcgtg tgcactgtca cgtcgtcgag ttgcgccttg ctgaatccgg
     6241 cagcatcgag atgtgcaatg tgctcatccg gcgtgtcgat gtccggaact gcccagccgg
     6301 tgagccactc gtgcagcagt cgctcgccgg tcggatccag cgggcggccg gcacggacga
     6361 aatcggcgac gacgacccgg ccgccggggc gcaacaaccg agcggcttcc tggtagaagg
     6421 cggccttgcg aggtgcgtgg cacagactct ccaccgccca cacgatgtcg aaactcgcat
     6481 cagggaacgg cgtatcggtg aagtcggcca cctcgaagtg cacccggtcg gtcaatcggc
     6541 gccgggccgc gtagctacgc gctttccgga cctgaccggc ggccagcgtg atgccgacaa
     6601 cttcagcgtc ccgctccttg gccaaccaaa agctgctgcc cccgactcca cagccagcat
     6661 ccagtacccg ctcgccggat tggatctgca cccgatccgc gagaacccgg ttcatgttct
     6721 tgagcgcgtc ggtatggctg cgggtgctct gatcggtata gccgaagtga actgccaggt
     6781 tgtccgggtt gagccacagc aggcgatagt cgagccaggt ctcgtcgtag taaccgacaa
     6841 tcgcgtcggt gagcgatcgc ttctcatctt gagctgtcac tggaatctgc ctccgactga
     6901 tgcctgcaaa cggttccaca tattcgtatg gcgggtactt gccgctgcat aaggttccac
     6961 ttggcggcgc gagactcagc ggcggcgcgc gagcaggaca gccgcgagtg gccagagcgc
     7021 ttgagcgccg gcgaggaacc gctcggacag gccgatccgc gaaccgtcgc tgagatattc
     7081 gagcccgaac cagccgagca aaccgagcag accggaggca gcgatcagcg aggtgccagg
     7141 gcgaggctcg ccatcgcacc accgcgccag cgccggccac agcgacagtg tgctgaaggc
     7201 gaccgatgcg gcggcgatgt gaaccggtga ctcgccagtg gccagcagcg ggaacccagc
     7261 gagcagcacg gtggcagccc cgccggtgcc gagcaacagc cggcccggta atgccgctgt
     7321 cgtgagccca gcggccgtga ttgtgtggca cacgccgacc cctgccagcg ccgtggtcat
     7381 gatccaccgg tcagtggccc cactggcggc tagcgcactg atcgtctggg ttaccggatc
     7441 gaaaccgccc ggttgccggg ctgcggcaag ttgccaacca ccgatcagca gcaccggagc
     7501 gcaggcagag gacagcacag cccaccaggg cgccgaatca ctctgcatgg gctcccttgc
     7561 cgagtactac gacgtcgccg ccactcaccg tgtaacgctc ccggtccagg tccgggtcca
     7621 cccccacctg cgcgccgtcc ggaatcacca cgttcttgtc caggatcgcc cggcgcacga
     7681 tcgcaccttt gccgacccga acacccggca gcagcacgct gccctccacg tgggcaccag
     7741 cctcgacgac cacgtcgctt gacagcaccg aattggtcac gagcgcggcc gatacgatcg
     7801 agccggatcc cacgatcgac tcctgggccg tgccgccctg cacgaacttc gcgggcggca
     7861 gcgggggagt ggcggtgcgg atcggccaag cctggttgta gaggttgaac accggatgca
     7921 ccgacacgag gtccatgtgt gcgtcgtagt acgtgtccag ggttccgacg tcgcgccagt
     7981 agccacggtc ccggtcggtc gcgccgggga ccacattgtc ggcgaagtca tacaccgccg
     8041 cctccccggc atccaccagc atcgggatca cgtcgccgcc catgtcatga tcggaatcct
     8101 ggttggcgcc gtccgcgcgc agcgcggaaa ccagcaactt ggtggtgaac acgtagttgc
     8161 ccatggaggc gaatgtcatg tccgggtcgt ccggcgtgcc cggtggcctc gctggcttct
     8221 cgaggaactc ggtgatccgc ccggaggcgt cggcgccgat gcatccgaag gcgctggcct
     8281 gctcgcgggg cacccggatt ccggcgacgg tcacacccgc cccgctcgcg atgtgctgct
     8341 ccagcatctg cgaggggtcc atccggtaca cgtggtcggc gccgaaaacg acgatgtact
     8401 ccggtgcctc gtcatagacc agattgagcg actggaagat cgcgtccgcg cttccggtgt
     8461 accaccgcgg gccgaggcgc tgctgagcag gcaccggggt gatgtactgg ctcagcatcg
     8521 acgacagccg ccaggtcgtg gtgatgtggc ggtccaacga gtgtgacttg tattgggtga
     8581 gcacacagat tcggatatat ccggcgttga ccaagttgga gagcacgaag tcgaccagcc
     8641 gataattgcc accgaacggc acggcaggtt tggcccggtc cgcggtcagt ggccacaatc
     8701 gctttccctc accgccggca agaacgatgc ccagcacgtg cggctgtccc ttcacgatta
     8761 gtcacactag cgccggttgc accgcagagc cacgtgagtc ccgaccatgg tcactgaaag
     8821 ttcacaggta aggaccggtg acgacactac cagtgaccgc cggcggcagg cgcgctagcg
     8881 tgactcagcg tgcgtatcgc cgtcctgacc cgggagtacc cgcccgaagt gtatggcggc
     8941 gccggggtgc atgtcgccca cctggtgccc gagctgcgca agcggtgtga ggtcgaggtg
     9001 cattgcttcg gcgctcctcg agcgacggtg agcaatcacg cggttacccc gagtttggct
     9061 gcctccaacc aggctctgca aaccctgtcc gtgaacctga cgatggccga tgcggtgggt
     9121 ggcgtggaac tggtgcattc gcatacctgg tacgccaaca tggcgggcca cctggcccgc
     9181 gctctgcacg gcataccgca tgtgatcacc gcgcactcac tggagccacg aagaccgtgg
     9241 aaggccgagc aactgggcgg tggctaccgc gtttcctcgt gggtggaacg taccgcatac
     9301 gagcacgccg atgcgattat cgcggtcagt gacggcatgc gtgccgacgt gttggactgc
     9361 tatccgaccg tgcatccgga gcgggtgcac gtggtgcgca acggcatcga cgccgacacc
     9421 taccgtccgg tcccggaaac cgatgcccta cgccggttcg gggcagaccc gacgcggccg
     9481 atcgtcgcat tcgtcgggcg gatcacccgg cagaagggag tcggccacct actggccgcg
     9541 gcccaccaca tcgaccacgg agcccagttg ctgctctgcg cgggtgcgcc ggacacctcg
     9601 gaaatcgaga ccgaagctcg cgccgctgtg gcggagctct ccacagcccg gcccggggtg
     9661 atctgggtgc cggacatgtt gcctatcgag gacatccggc aggtgctgtc ggcggccacc
     9721 gtgttcatct gcccatcggt ctacgaaccg ctgggaatcg tgaatctcga ggcgatggcc
     9781 tgcggtaccg ccgtggtcgc ttcctccgtt ggcgggatcc ccgaggtcgt cgacgatggc
     9841 gttaccggct tcctggtgcc ctatgacgag cacgaccccg aggcgttcca ccgggggctg
     9901 gccgaccgcg tcaatgagct cctcgccgac cccgaccggg ttgcggcgat gggccaagcc
     9961 ggtcgaaaac gcgccatcac cgaattctcc tggccagcag tagccgagcg gaccatgcac
    10021 ctctaccaaa ccctcctctc ctagaccctc tccttacccc cgatatggag ccctatcggg
    10081 cttcaccggg gtgtgctccc cccgatatgg ctccatatcg gggggaaaac cgctgtcaag
    10141 gggtggggcg ggggttggga gtttgtgagg ttgatgtgga caagtcggtg gttttgcggg
    10201 gttggcgttg gacaacagcg gtgatcgacg acaggttgca cctcgtgaag ctcaagattc
    10261 gaccgactga cctctgcggc gtcttccgcg ggtccgacgc cgtcacgagc ggcgtgctga
    10321 ccgccgacca gctgcgcggg ccgtatttcc gccgtctgta ccgtgacgtc tacctgcccg
    10381 ccgggatgcc tatcacgcat tcactacgtt gcgaaggcgc cgcactcgtg ctgcccaccg
    10441 ctgccgtgct cacgggacgc tcggcggcga cgctacgcgg gatcccgtta gcccgcgcaa
    10501 cagatccggt agagatcgtc atgccattgg aaacccgaat cgcccgacgc agcggcctgg
    10561 acgtcggcgc agcgacctca ctgctaaaga attcacaccg tggttaggca ttggtctggc
    10621 cacgccgttg cggacgtcgc tagacctgct ccttgatcgc accctgccag acgcggtcgc
    10681 tgatctcgac gccgtgctgc gagcggggct cgttgacctt ggtgcacttc aacggatggt
    10741 cactgagcga cacgatcgag gcattgtcgc cgcacgccga gcggccgagt tggccgattc
    10801 gcgagcggaa tctcggccag agtcccggct ccgcgtgtac ctcgtgctcg atggccttga
    10861 gccggtgccg cagtacctgg tctgtgattg gcaaggagta gtcgcgagag tggatctcgg
    10921 atttccctat gagcgactcg ccgtggaata cgatggagaa tggcacgggg aatggcgcca
    10981 gatcagcgcc gaccgtgagc gactcaaccg cctgcaagcc gccggctggg atgtcttgtt
    11041 cgtcaccgcc cgccagctac gcgacccagc cgccgtcgtc gcatcagtcc gcaccgcctt
    11101 cgcccgctga ccctgacccc gatatgagc
//
LOCUS       DASVXZ010000243         1526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_116320, whole genome shotgun sequence.
ACCESSION   DASVXZ010000243 DASVXZ010000000
VERSION     DASVXZ010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116320"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..128)
                     /locus_tag="VF788_04860"
     tRNA            complement(54..128)
                     /locus_tag="VF788_04860"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(92..94),aa:Ile,seq:cat)
     gene            636..>1526
                     /locus_tag="VF788_04865"
     CDS             636..>1526
                     /locus_tag="VF788_04865"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEX8933516.1"
                     /translation="MRALRETERKYDAADTMELPDPAELPGLATGSAAQEQHLEAVYF
                     DTSDLRLARAGVTLRRRAGGSDPGWHLKLPVGGDSRDELRMPARTSRRQPPAALVELI
                     RVHSRGAALVPVAQLNTRRRRWVLTDPDGNPLAELVEDRVSAHTMGEQTRTVSWREVE
                     VELAEHGHVDLLNSIERWLLDAGAQRSRSRSKLGRLLAEELSASRTASRHGSASSAGE
                     VVLAYLRTQAEQLRRYDPLVRRDAPDAVHQMRVAARRMRSALQAFGRLIDRDRTRHLM
                     AELKWMAGELSGARDAEVMAE"
BASE COUNT          291 a          460 c          516 g          259 t
ORIGIN      
        1 ctgatcgtgg ccggtatgaa tgccgggaag ggcatacacc gaggtcaaac cggtggggcg
       61 ggtggggttc gaacccacga cctgacggat tatgagtccg ctgctctgac cagctgagct
      121 accgccccgg acgggtgctg aggctagccc aacgcggatc tcccaccgca gcgggataca
      181 acagatcaac cggtgtgctg gtgcagcggc ctccagcgtg gcctggcgac cggagcgaga
      241 caactgcgga accgtccgat acgccgacca tgcaaactta gtggatcttg atgacaagga
      301 taagtcgggg gtcatcgtcg cgcgcataga aacaagcgtg acaccgtggg catggagacc
      361 tgtgctttac ctttacagtg cagtcagcct gacggagcgc ggctacgcga aggcgataga
      421 gcctcgcctc cacaactatc gcgcggatcc ttcagggccg cgtcggatta tcgcgatgga
      481 ttacttcgag gagcctcagg ggttgcatca cattattgag atgagcaatc actgagtcac
      541 cgtcggtagt gaccttgctc gaatgctcac acgctcggca gtgttcggcg atgagccgtt
      601 gggggtatat ctttcgcatg gccaaagctg acaacgtgag agcactgcgc gagaccgagc
      661 gcaaatatga cgcagccgac acgatggagc tgcctgaccc ggcggagttg cctggactgg
      721 ccaccggttc ggctgcccag gaacagcacc tcgaggcagt gtacttcgat acctccgatc
      781 tgcgcctagc gcgggcggga gtcacgttgc ggcgccgagc cggtggatcc gatcctggat
      841 ggcacttgaa gctgcctgtc ggtggggata gccgcgacga gttgcggatg ccagcgcgca
      901 cctcccgccg tcagccaccg gctgcgctgg ttgagctgat ccgggtgcat tcccgcggcg
      961 ctgcgttggt accggtcgcc cagctcaata cccggcggcg ccggtgggta ctcaccgatc
     1021 cggacggcaa cccgctcgct gaactggtcg aggatcgcgt cagcgcacac acaatgggcg
     1081 agcagaccag aacagtgtcc tggcgggaag tcgaggtgga gctcgccgaa cacggtcacg
     1141 tggatctgct caacagcatc gagcgctggc tactcgatgc cggagcgcag cgctcaagat
     1201 ctcgatcaaa gctcggtcga ctgctcgccg aagaactctc agcatcccga accgcatcgc
     1261 ggcacggctc cgcatcctca gcgggtgagg tcgtgctggc ctacctgcgg acccaggccg
     1321 aacagttgcg ccgctacgac ccgctggtcc ggcgtgacgc acctgatgcg gtgcaccaga
     1381 tgcgggttgc ggcgcgtcgg atgcgcagtg cgctgcaggc cttcgggcgg ctgatcgacc
     1441 gggatcggac ccgccatctg atggcggagc tgaagtggat ggccggtgag ctgagcgggg
     1501 cacgggacgc ggaggtgatg gccgag
//
LOCUS       DASVXZ010000244         1876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_999050, whole genome shotgun sequence.
ACCESSION   DASVXZ010000244 DASVXZ010000000
VERSION     DASVXZ010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_999050"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="VF788_04870"
     CDS             complement(<1..840)
                     /locus_tag="VF788_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933517.1"
                     /translation="MFAYAMRRVLVSVPILIIATFVVFMMVSASGDPLSELRTRNPPP
                     PPRTFQLEAHRLHLDEPLLTRYWHWITGLLHGDFGPSVQSTQVIGPELVHRFLVTFRL
                     IGLAMLLALVLAVLVGVVSAVKQYSGADYTFTFFGFLFLAMPSFWFAILLKEAGISFN
                     DAVGNQVLFTIGDSSVYLEGGKWASVLDVLGHMILPTISLALLSFAAWSRFQRASMLE
                     VLGSDYVRLARAKGLGRSAVMSRHALRTALIPLVTVTALDLGAIISGAVVTKNVYQWR
                     GAGS"
     gene            complement(957..1673)
                     /locus_tag="VF788_04875"
     CDS             complement(957..1673)
                     /locus_tag="VF788_04875"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8933518.1"
                     /translation="MFTAVDRQAIIDKTVGQFTKKIKPLNSHNFVPQESGYEDVVSAT
                     GQGSGNLARAKQILTGAGYRIDGEQLKTPIGMTVPPMRIRYTVGNQVRQAECELFAQQ
                     LKPLGITVQVVPTDDLGATTTRGDYDIIVFAWVATPFPYANATQTWVTGQGSNFGRYS
                     NPDVDRLIAAAANSTDEALARETLNQADRRLTNDAYVLPLYQKPTFVALYDDVANVRN
                     NSSLDGPQYNIQQWGLRATG"
     gene            complement(1636..>1876)
                     /locus_tag="VF788_04880"
     CDS             complement(1636..>1876)
                     /locus_tag="VF788_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933519.1"
                     /translation="IITDARQEPTALQNREVQVIYPQPQVDQVQQVRRIPGVSSFVGL
                     GLSWEHFDLNLANNYLRPRAAHRHVHRGRPAGHHR"
BASE COUNT          347 a          577 c          619 g          333 t
ORIGIN      
        1 gctgcccgcc ccgcgccact ggtagacgtt cttggtgacg acggccccgg agatgatcgc
       61 gccgaggtcc agcgcggtca cggtgaccag cggaatcagc gccgtgcgca gggcatgccg
      121 actcatcacg gcgctccgcc cgagaccctt ggcccgggcc aatcggacat agtcgctgcc
      181 caggacctcg agcatggacg ctcgctggaa ccggctccag gctgcgaagg acagcaacgc
      241 cagcgagatt gtgggcagga tcatgtggcc cagaacgtcg aggactgatg cccacttacc
      301 gccctcgagg tagaccgaac tgtcaccgat agtgaacagc acctggttac ccactgcgtc
      361 attgaagctg atcccagcct ccttgagcag gatcgcgaac cagaacgacg gcatggccaa
      421 gaagaggaac ccgaagaagg tgaaggtgta gtcagccccg gagtactgct tgaccgcact
      481 gaccacgccg acgagcaccg cgagcaccag tgccagcagc atcgccagcc cgatgaggcg
      541 gaatgtgacc aggaaccgat gaaccagttc cggcccgatc acctgggtgg actgcaccga
      601 cggaccgaag tcaccgtgga gcagcccggt gatccagtgc cagtaacggg tcagcagcgg
      661 ctcgtcaaga tgcagccggt gggcctcgag ctggaaggtg cgcggtggcg gcggaggatt
      721 gcgggtcctg agctctgaaa gcggatcacc ggaggccgac accatcatga agaccacgaa
      781 cgtcgcgatg atcagaatcg gcaccgacac cagcacccgg cgcattgcgt aggcgaacat
      841 gcacgtcttc ctgcgtcagc ggatcccctc cgtacccagc cgtcctaccc tacgtcccct
      901 accgtggcag cctgttaagc cacgggtgtg ctgctcggcc tgattgggag ggagggtcag
      961 ccggtggcgc ggaggcccca ctgttggatg ttgtactgcg gtccgtcgag cgaggagttg
     1021 ttgcgcacgt tggcgacatc gtcgtacagc gcgacgaacg tcggcttctg gtacagcggc
     1081 agcacgtaag catcgttggt cagccggcgg tctgcctgat tgagtgtctc cctggctagc
     1141 gcctcgtctg tggagttggc cgcagccgcg atcaggcgat cgacgtccgg gttgctgtag
     1201 cgaccgaagt tgctgccctg gccggtgacc caggtctggg ttgcattggc gtacgggaac
     1261 ggcgtggcga cccaggcgaa gacgatgatg tcgtagtcac cacgtgttgt ggtggccccg
     1321 aggtcatcgg tgggcaccac ctggacggtg attcccagtg gcttgagctg ctgggcgaac
     1381 agttcacact cggcctggcg gacctgattc ccgacggtgt agcgaatgcg catcggcggc
     1441 accgtcatcc cgatgggagt cttgagctgc tccccgtcga tccggtaacc cgcgccggtg
     1501 aggatttgtt tggcccgcgc caggttgcca gaaccctgac cggtcgcgct caccacatct
     1561 tcgtaaccgc tctcttgggg aacaaaattg tggctattca gcggcttgat cttcttggtg
     1621 aactgaccca cggtcttatc gatgatggcc tgccggtcga ccgcggtgaa catggcggtg
     1681 cgcagcgcgg ggtcggaggt agttgttggc caggttgagg tcgaagtgct cccagctcag
     1741 tcccaatccg acgaaggacg agacgccggg aatcctgcgg acctgttgca cctggtccac
     1801 ctgcggctgc gggtaaatga cctggacctc gcggttctgc agcgcggtcg gctcctgccg
     1861 cgcatcagtg atgatc
//
LOCUS       DASVXZ010000245         3701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_653640, whole genome shotgun sequence.
ACCESSION   DASVXZ010000245 DASVXZ010000000
VERSION     DASVXZ010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653640"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..777)
                     /locus_tag="VF788_04885"
     CDS             complement(<1..777)
                     /locus_tag="VF788_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803941.1"
                     /note="binding of PriA to forked DNA starts the assembly
                     of the primosome, also possesses 3'-5' helicase activity;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosome assembly protein PriA"
                     /protein_id="HEX8933520.1"
                     /translation="MSVVVEWSAHSGRPANVSIGRSPRGQHSPATMLPIARVCVDTPL
                     AHLDRPFDYQVPAELDTAAVPGVRLRVRFAGRLVDGWLLNRVERSDHPGRLGWIDRVV
                     SAEPVLSPEVAALARAVADRCAGTMSDVLRLAVPPRHARTEAEPSAAAAGQPQRPETS
                     GWRRYPRGSAFLDALHQGRSAHACWQVLPGEDWAARLAEAAVTVAATGRGALLVLPDH
                     RDTARVHAAVATLAGPDAVVTLAAEAGPAQRYRRWLAVRRG"
     gene            complement(801..2045)
                     /gene="coaBC"
                     /locus_tag="VF788_04890"
     CDS             complement(801..2045)
                     /gene="coaBC"
                     /locus_tag="VF788_04890"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEX8933521.1"
                     /translation="MTRAGLRWLASPRRIVLGIGGGIAAYKVCEVLRHLTEAGHQVRV
                     VPTEAALKFVGAPTWEALSGLPVRHDLFAGVPEVPHVRLGQTADLVLVAPATADLLAR
                     AAHGRADDLLCATLLTARCPVLLVPAMHTEMWEHPATRDNVATLRARGTVIAQPASGR
                     LTGADSGTGRLPEPAEIIELATVLLHRADALPADLTGRHVVVSAGGTREPLDPVRYLG
                     NRSSGRQGYALARVAAQRGARVTLIAGHTADLPGPAGVEVIPVGTAGQMWEAVLKVAP
                     DADAVVMAAAVADFRPAEQRLNKIKKAGLNPEPLPLVATPDILAELVRRRSGGQVVVG
                     FAAETGDSAGDVLTHGRAKLIHKGCQLLVVNAVGEGGAFEVDHNTGWLLGDDGAETEL
                     PEGPKALLASYVWDAVAARLAR"
     gene            complement(2042..2332)
                     /gene="rpoZ"
                     /locus_tag="VF788_04895"
     CDS             complement(2042..2332)
                     /gene="rpoZ"
                     /locus_tag="VF788_04895"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEX8933522.1"
                     /translation="MSIPTELDALNAPAAPAPEGITNPPIDDLLAKVSSKYALVIFGA
                     KRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREIHAGLLEHTEGQ"
     gene            complement(2423..3007)
                     /gene="gmk"
                     /locus_tag="VF788_04900"
     CDS             complement(2423..3007)
                     /gene="gmk"
                     /locus_tag="VF788_04900"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005152355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEX8933523.1"
                     /translation="MCEPGSSKDAGPRLTVVSGPSGVGKSSLVAEVVRRWPQLFVSVS
                     VTTRSPRPGERPGEHYHYVDRETFAHMIERGEFLEYAEYAGNFYGTPAEPVKQALGAG
                     RSTLLEIELQGARQVRAAMPDALLVMLMPPSWEVLDGRLSDRGTEDSAVRERRMRVAR
                     EELDAAGEFDATVINDDLKRAAQELITLMGGTAR"
     gene            complement(3069..3386)
                     /gene="mihF"
                     /locus_tag="VF788_04905"
     CDS             complement(3069..3386)
                     /gene="mihF"
                     /locus_tag="VF788_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor, actinobacterial type"
                     /protein_id="HEX8933524.1"
                     /translation="MALPQLTEEQRAAALEKAAAARRARAELKERLKRGGTNLKEVLA
                     KSDSDDILGKMKVSALLEALPGVGKVRAQQIMERLEIATSRRLRGLGERQRKALLSEF
                     GPE"
     gene            complement(3468..>3701)
                     /locus_tag="VF788_04910"
     CDS             complement(3468..>3701)
                     /locus_tag="VF788_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933525.1"
                     /translation="LNGPILAPGIGAQGARVADLPQVFGAAASLVVMATSRELLQYGP
                     RPESLRHAARLIAEEAASVVDFGRSRSAGIPPG"
BASE COUNT          597 a         1313 c         1205 g          586 t
ORIGIN      
        1 accccgccgc accgccaacc accggcggta gcgttgcgcg ggtccggcct cggccgccaa
       61 ggtgaccacc gcgtcgggcc cagccagtgt ggccaccgcg gcgtgcaccc gggcggtgtc
      121 ccggtggtcg ggcagcacca gcagcgcacc ccgtccggtc gctgcgaccg tgacggcagc
      181 ctcggcgagc cgggcggccc aatcctcccc tggcaatacc tgccagcagg cgtgcgcgga
      241 acgcccctgg tgcagtgcgt ccaggaaggc ggatccccgg gggtaacgcc gccagccact
      301 cgtctcgggc cgttgcggtt ggcctgccgc ggccgcgctg ggctcggctt cggtgcgcgc
      361 atgccgtggc ggcacggcca gccgcaacac gtcgctcatg gtgcctgcgc atcggtcggc
      421 cactgcccgg gccagggcgg cgacctccgg actgagcacc ggctcggcgg agaccacccg
      481 gtcgatccag cccagccggc ccgggtgatc ggatcgctcg acccggttca gcaaccagcc
      541 gtccaccagc cggccggcga aacgcacccg aaggcgcaca ccgggcactg ctgccgtgtc
      601 gagctcagcg ggcacttgat agtcgaaagg acggtctagg tgggccagcg gggtatccac
      661 acatacccgg gcgatgggca gcatggtggc cggactgtgc tgcccccgcg gggaccggcc
      721 gatgctcacg ttggcgggtc taccagagtg cgctgaccac tccacgacga cgctcatgcg
      781 acgacgccgt atccgcaggc tcagcgtgcc agccgggcag cgacagcgtc ccagacgtag
      841 gaggcgagca gcgccttggg accctcgggt agctcggtct ccgcaccatc gtcgccgagc
      901 agccagcccg tgttgtgatc tacctcgaat gcgccgccct cccccaccgc gttgacgacc
      961 agcagctggc aacctttgtg gatgagcttg gcccgcccgt gggtcagcac atcgcccgcg
     1021 gagtcaccgg tctcagctgc gaagccgaca accacctggc cgcccgagcg gcgccggacc
     1081 agctcggcca ggatgtccgg ggtggccacg agaggcaagg gctccggatt caatccagct
     1141 ttcttgatct tgttgagacg ctgctcggct ggccggaagt cggcgactgc ggcagccatc
     1201 accaccgcgt cggcgtctgg cgccactttg agtaccgcct cccacatctg accggcggtg
     1261 cccacaggga tcacctcgac ccccgccgga ccgggcagat cagccgtgtg cccggcgatc
     1321 agcgtgacgc gagcaccgcg ctgagccgcg acacgagcca gcgcgtagcc ctgccgacca
     1381 gaggaccgat tgccgaggta gcgcaccggg tccagcggct cacgcgtgcc acccgcggag
     1441 accaccacat gacgcccggt gaggtccgcc ggcagagcat ccgcgcggtg caacagcacc
     1501 gtggccagtt cgatgatctc ggcgggctcc ggcaggcgac cagtacctga atcggcacca
     1561 gtgagccgcc ccgacgcagg ctgagcgatg acggttccgc gggcgcgcaa cgtcgcgacg
     1621 ttgtcccggg tggcgggatg ttcccacatc tcggtgtgca tcgcgggcac caacagaacc
     1681 gggcaacgag cagtgagcag ggtggcgcag agcagatcgt cggccctgcc gtgggcggcg
     1741 cgagccagca ggtctgcggt ggccggcgcc accaggacca ggtcggcggt ctgtcccaac
     1801 cgcacgtggg gcacttcggg aacgcctgcg aacaggtcat ggcgcacagg taacccggac
     1861 agtgcctccc atgttggcgc acccacgaac ttcagcgctg cctcagtggg aactacccga
     1921 acctggtgtc ccgcctcggt gagatggcgg agtacttcgc ataccttgta ggcggcgatg
     1981 ccgccaccga tgccgagcac gatccgccgg ggtgaagcca gccagcggag cccggctcgg
     2041 gtcactgccc ctcggtgtgt tctagcaaac ctgcgtggat ttcgcgcagc gcgatcgaca
     2101 gcggcttctc ccgcggccct ggctcgacca gtggcccgac gtactccagc aggccctcgc
     2161 cgagctgcgc gtagtagtcg ttgatctgcc gagcccgctt cgccccaaag atgaccagtg
     2221 cgtacttcga gctgaccttg gccaagagat cgtcgatcgg cgggttggtg atgccttcag
     2281 gggcgggagc tgcgggcgcg ttgagcgcgt ccaattcggt ggggatgctc actcattgtc
     2341 tccaggtgcc atcagatatc cagtgcggtc aactgtccca gtgtcacgga tggcggtgcc
     2401 accgcggtcg ggccgacgtt gttcaccgag ccgtgccgcc cattaaggtt atcaactcct
     2461 gtgcggcccg tttcaggtcg tcattgatta ccgtcgcatc gaactctccg gcggcgtcca
     2521 gctcttcgcg cgcgacacgc atccggcgct cccgcaccgc ggaatcttcc gtgcctcggt
     2581 cggacaaccg cccgtcgagc acctcccacg acggcggcat cagcatcacc agcagtgcgt
     2641 cgggcatggc tgcccggacc tgccgggcac cttgcagctc gatctccagc aaggtggacc
     2701 ggccagcacc caacgcctgc ttgaccggct cggccggagt gccataaaag ttaccggcgt
     2761 actcagcgta ctcgaggaac tccccgcgct cgatcatgtg agcgaaggtc tcacgatcca
     2821 cgtaatggta atgctcgccg ggccgctctc cgggacgagg cgaccgggtc gtgactgaca
     2881 cactgacgaa cagctgcggc catcgtcgca ccacctcggc gaccaagctg gatttgccaa
     2941 ctccggaagg acctgagacg acggtgagcc ggggcccagc atccttactg gaacccggct
     3001 cacacaccgt cacagcgcag gttgatcact gtgtgtccga ttttctgggc tgattgactc
     3061 cagagtgctt attctgggcc gaactcgctg agcagcgcct ttcgctggcg ctcgccgagc
     3121 ccgcgcaacc gccgactcgt agcgatctcc agccgctcca tgatctgctg agcgcggacc
     3181 ttgcccacgc caggcaaggc ctcgagcaat gccgagacct tcatcttgcc caagatgtcg
     3241 tcgctgtcag acttggcgag gacttccttg aggttggtcc cgccgcgctt gaggcgctcc
     3301 ttgagctcgg ccctggcacg tcgggcggcg gccgccttct ccaatgcagc ggcccgctgc
     3361 tcctcggtca gctggggaag ggccacggtc tcctccgtcg attgctagtg cttgagggat
     3421 gattctggat tggtgcggcc gaccgtatcc cccgggcgcg gtgccgctca acccgggggt
     3481 atccccgccg acctgctccg accgaaatca accacgctgg cggcctcctc cgcgattagc
     3541 cgggcggcgt gtcgcaatga ctctggccgc ggtccatatt gcaacagctc ccgtgaggtg
     3601 gccatcacca caagggacgc cgcagcaccg aagacctgag gcaagtcagc tacccgcgcg
     3661 ccttgcgctc ctatccctgg cgccagtatc gggccattga g
//
LOCUS       DASVXZ010000246        10624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_295376, whole genome shotgun sequence.
ACCESSION   DASVXZ010000246 DASVXZ010000000
VERSION     DASVXZ010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10624
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295376"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VF788_04915"
     CDS             complement(<1..394)
                     /locus_tag="VF788_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005442510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX8933526.1"
                     /translation="MPSSSSKSGRDKGNRKPASQGNEKRRAPRMRTVAETSAGGLVVD
                     TETGHAAVIGRLDRRGRLLWSLPKGHVEQGETVEQAAVREVAEETGIDSAVVAALGSI
                     DYWFVAEDRRIHKTVHHFLLRAVGGKLSD"
     gene            479..1975
                     /locus_tag="VF788_04920"
     CDS             479..1975
                     /locus_tag="VF788_04920"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEX8933527.1"
                     /translation="MSVGVGRAQQNAVVELVRIAPVADELAARFSAAGHSLYLVGGSV
                     RDALLGRLGRRLIAGSAGGGLIAGSAGGDLDFTTDARPDAIAAILRGWADAVWDSGIA
                     FGTVGASKGGIQCEITTYRADRYDRVSRNPDVVFGDTVEGDLARRDFTVNAMAVQLPL
                     RGRGGGRFVDPYGGMAALARRELDTPMTPEASFADDPLRMLRAARFVSQLGFTLAPRV
                     RDAMVAMAGEIGRITVERISAELSKLMLGANPRAGVELTVDTGLAEHVLPEVPAMRLE
                     IDEHHQHKDVYTHSLTVLDQAIALEGGEPDLVLRLAALLHDIGKPATRRHEPGGGVSF
                     HHHEVVGAKMTRKRLRALRYPKQIIDDVAALVFLHLRFHGYGGGEWTDSAVRRYVTDA
                     GELLPRLHRLVRADCTTRNRRKALALQGTYDDLERRIERIRADEDLAAVRPDLDGNAI
                     MELLGLPPGPDVGRAWRYLKEMRLDRGPLSREEAEAELRRWAQDNLRR"
     gene            1997..2599
                     /locus_tag="VF788_04925"
     CDS             1997..2599
                     /locus_tag="VF788_04925"
                     /inference="COORDINATES: protein motif:HMM:NF014089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIM24 family protein"
                     /protein_id="HEX8933528.1"
                     /translation="MRSDLFAPDHQETAAKQPGMVLQNSKMLKIALAGEVLARQGSMV
                     AYQGEVQFKALGSGGVGKFLKQKLTGEGIPLMKASGEGDVFLADLSADVHLIDLEGPD
                     DALTVNGRNVLAFEPTLSYADPQAAVAWSAGLQTGFHRADQLGLGMLLGRSTGEVFTM
                     RFAGRGFVIVQPSEELPVSVLSGSGNQSGSGGLFGDLMGR"
     gene            2623..3174
                     /gene="idi"
                     /locus_tag="VF788_04930"
     CDS             2623..3174
                     /gene="idi"
                     /locus_tag="VF788_04930"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEX8933529.1"
                     /translation="MPADDAPVVLLDEERRPIGQLPKSQVHHAATPLHLAFSCYVFDG
                     SGQLLMTRRATSKRTWPGVWTNTCCGHPLPGEPLEVAAARRLHEELGLTLTRSELVLP
                     EFSYRAVAPEGIVENEFCPVLVAHAQGVPRPDPTEVLDHYWSPWPHIITVAANSPWLI
                     SPWSALQIPLLAEFLPRHGDISG"
     gene            complement(3187..4512)
                     /locus_tag="VF788_04935"
     CDS             complement(3187..4512)
                     /locus_tag="VF788_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8933530.1"
                     /translation="MTLSQILVPASVTDRLGLRRLLGTPGFGRLLASRFATQWGDGFF
                     QAGLGGAVLFNPEREAAPMAVAAGLAVLFLPYSLVGPFAGALLDRWDRRRILILSNLL
                     RTVPILLVALAVGLGVAGAPLYLGALLVTGLSRFVLAGLSAALPHVAPPGHLVQANAL
                     AATVGSAFTVVGGVSAIGLRGLIGAGNAGSAWVTGSAVLGSLVAAVIATGFHRGELGP
                     ACQFATGLPKTTPALASGLRDSLRAAARVPSVAAGLTALVAHRVSFGIATMVTLLLYR
                     NSFTSHGLFRAGLTGVCELLAAGAAGLLLAGLLSPLLVARFGRRRTVRGALVAAGVAI
                     LSLGLPMIMSTILAAVFVVATAGQVVKLSLDATVQADVSDDARGRVFSLYDTVFNTSY
                     VLAIALAATVVPLNGRAPDLLLIAAALYFIAVPLYALIDSPPRHGDISG"
     gene            4571..5170
                     /locus_tag="VF788_04940"
     CDS             4571..5170
                     /locus_tag="VF788_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HEX8933531.1"
                     /translation="MNGHEEPGEVSAVDVVEAGSALVAAPGLRDPNFRRTVVLIIEHQ
                     PAGTIGVVLNRPSEVAVRDVLPSWSPHATVPRALYVGGPVQQRAALCVAALPVGVDAE
                     LTEGMIAVRGSLALVDLDADPDLMAPRLRGLRVFAGYAGWSQGQLAAEVSRGDWVVVP
                     ALADDVLAPPDTDLWSRILRRQGMPLALLATYPADPTLN"
     gene            5177..5317
                     /locus_tag="VF788_04945"
     CDS             5177..5317
                     /locus_tag="VF788_04945"
                     /inference="COORDINATES: protein motif:HMM:NF019614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEX8933532.1"
                     /translation="MPTHVALLRGINVGGPNRVAMADLRAVVTSLALPRADRRRCAIG
                     RR"
     gene            5732..6148
                     /locus_tag="VF788_04950"
     CDS             5732..6148
                     /locus_tag="VF788_04950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933533.1"
                     /translation="MSATDVAKIPASNMRVSRTEFVALWQTAERLHDEQLRRGVPDWY
                     GAGVVETCRWLAIVEPKTGPGHLAPSPVTKRIQVAYDDLIEGECQAAEQLAGSRPVPA
                     RLMSRPGWIEAVVATLNWAWRRHGSPPLDTGRSRWG"
     gene            complement(6184..6537)
                     /locus_tag="VF788_04955"
     CDS             complement(6184..6537)
                     /locus_tag="VF788_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8933534.1"
                     /translation="MAINHVLAVVPVADIDTARDWYEHLLGRTPDNHPMEGLAEWRVT
                     DTGWLQVWEDPDRAGTALLNFAVDDLAAHLDELASRGLSPGEVQTVNKGVQLTAVTDP
                     DGNMITFIGNFRVNY"
     gene            complement(6649..7050)
                     /locus_tag="VF788_04960"
     CDS             complement(6649..7050)
                     /locus_tag="VF788_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8933535.1"
                     /translation="MLLDGVNHIAWISKDVERLGRFYATVFDAVIGPTREHGPGETMT
                     VIDIGPATQLNIFVIDGNTEADRQTPMWGRGRIDHVGLAAASPEAFETIRDRLVEAGA
                     SDGTINDFGTAQSIFFRDPDGLEGEVLLQKQ"
     gene            7391..7744
                     /locus_tag="VF788_04965"
     CDS             7391..7744
                     /locus_tag="VF788_04965"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8933536.1"
                     /translation="MCRSRRHNLPKYVLTHRPIDGDVWNNTTVLGNDAVGQVQSLKEQ
                     TEHDIGMSGCATTVRWLLAQGLLDELNLLVHPIAVGKGQRLFDDTGKVPLTLLSCDTL
                     PSGVLHLRYAPAVAE"
     gene            complement(7876..8064)
                     /locus_tag="VF788_04970"
     CDS             complement(7876..8064)
                     /locus_tag="VF788_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8933537.1"
                     /translation="MGIDDKIDNKADVLKGKVKETAGQASDDPELEAEGRGDQAEGHV
                     KQAGEKVKDAIKDVLGKK"
     gene            8312..8524
                     /locus_tag="VF788_04975"
     CDS             8312..8524
                     /locus_tag="VF788_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933538.1"
                     /translation="MALDPSVDIGRRVWRPCSYCPNEDGLYLLDADANLVYVQCGLCH
                     TCWWLDTGYGAGKRPKDAENPPQWPA"
     gene            8965..9462
                     /locus_tag="VF788_04980"
     CDS             8965..9462
                     /locus_tag="VF788_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEX8933539.1"
                     /translation="MPPVDVYPIGPGQESVWDYPRPPRAQRVSRRARIVHGGTLVLDT
                     DDLVRVLETSHPPTYYLPRSEFRVPLLPSSRLTVCEWKGEACYVDVEVPGVASLREVG
                     WWYPQPDLRYPQLTDRVAVYAGRFDEVTLDGELVTPQPGEFYGGWITAGIVGPFKGVP
                     GSWGW"
     gene            9872..10084
                     /locus_tag="VF788_04985"
     CDS             9872..10084
                     /locus_tag="VF788_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933540.1"
                     /translation="MKISQIFAQGGGHGHGGGCGCGNWVGDEKYHPTGYYYRRHGDYY
                     CYNDGCGYKPHSHRIALLDGLLTILD"
     gene            10377..10624
                     /locus_tag="VF788_04990"
                     /pseudo
     CDS             10377..10624
                     /locus_tag="VF788_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007030860.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
BASE COUNT         1799 a         3392 c         3539 g         1894 t
ORIGIN      
        1 catcggacag cttgccgccg accgcgcgca gcaggaagtg gtgcaccgtc ttgtggatgc
       61 ggcgatcttc agcgacgaac cagtagtcga tgctgcccag ggcggccacc acagcgctgt
      121 cgatcccggt ctcctcggcg acctcacgca ccgcagcctg ctccactgtc tcgccctgct
      181 cgacgtgacc cttgggtagt gaccagagca acctaccccg gcggtccagc cgcccgatca
      241 cggccgcgtg tccggtttcg gtgtccacga ccaacccacc cgccgacgtc tcggccacgg
      301 tgcgcatccg tggcgcccgg cgtttctcgt tgccctgact ggcaggcttg cggttgccct
      361 tgtcgcgacc ggacttgctc gaggacgagg gcatggcccg atggtatagg cgccgccgca
      421 gggctaccgt ctcagcgggg tcgtccgccc tcggtgctac ccgttaggct cgctccccgt
      481 gtcggttggg gtgggtcggg cgcagcagaa tgctgttgtg gagctggtgc ggatcgcgcc
      541 ggtggctgat gagctggccg cccggttcag cgccgctggt cactcgcttt atctggtggg
      601 gggcagcgtg cgggatgccc tgctcggccg gctgggccgc cgtttgattg ccggctccgc
      661 cggcggtggt ctgattgccg gctccgccgg cggtgacctg gacttcacca ccgacgcgcg
      721 tccggatgcg atcgctgcga tcctgcgtgg ctgggcggat gcggtctggg actccggtat
      781 cgccttcggc acagtcggcg cgtcgaaggg cggcatccag tgcgagatca ccacctaccg
      841 ggctgatcgc tacgaccggg tgtcccgcaa ccccgatgtc gtcttcggtg acaccgtcga
      901 aggtgatctg gcccggcggg acttcacggt gaacgcgatg gcggtccagt tgccactgcg
      961 tgggcggggc ggtggtcgtt tcgtcgatcc ctacggcggg atggccgcgc tggcgcgccg
     1021 ggagctggac acgccgatga cgccggaggc gtccttcgcc gacgacccgc tgcggatgct
     1081 gcgcgcggcc cggttcgtct cccagctcgg cttcaccctc gccccccggg tccgggacgc
     1141 catggtggcg atggcgggcg agatcggccg gatcaccgtc gagcggatct ccgcggagct
     1201 gtccaaattg atgctcgggg cgaacccgcg ggccggtgtc gagctgacgg tggacaccgg
     1261 cctggccgag cacgtgctgc ctgaggttcc cgcgatgcgc ctggagatcg acgagcatca
     1321 ccagcacaag gacgtctaca cgcattcgct gacggtgctg gaccaggcga tcgcgctgga
     1381 aggcggcgaa cctgacctgg tgttgcggct ggccgcattg ctgcacgaca tcggtaagcc
     1441 agccacccgc cggcatgagc ccggcggagg ggtgagcttt caccaccacg aggtcgtggg
     1501 cgccaagatg acgcgcaagc ggttgcgcgc cttgcgttac cccaagcaga tcatcgacga
     1561 cgtcgcggcg ttggtgttcc tgcacctgcg cttccacggc tatggcggcg gcgagtggac
     1621 agactcggcg gtgcgccgct acgtcaccga tgccggggag ctcctcccgc ggctgcaccg
     1681 gctcgtccga gccgactgca ccacccgaaa ccgccgcaag gcgctcgcgc tccagggcac
     1741 ctacgacgac ctggagcggc gtatcgagcg gatccgtgcc gacgaggacc tggctgcggt
     1801 tcggcctgat ctggacggca acgcgatcat ggagctgctc gggttgccgc caggaccgga
     1861 cgtcggccgt gcctggcgct acctcaagga aatgcgcctg gaccgtggcc cgctgtcccg
     1921 cgaggaggct gaggccgagt tgcgccgctg ggcccaggac aaccttcgcc gctgagtacc
     1981 ggaaggaatc tccccaatgc gcagtgatct gttcgctccc gaccatcagg aaaccgcggc
     2041 caagcaaccc ggcatggtgc tgcagaactc caagatgctc aagatcgcgc tcgctggcga
     2101 ggtgctcgcc cggcaaggtt cgatggtcgc ctaccagggg gaggtgcagt tcaaggcgct
     2161 gggttcgggt ggcgtgggca agtttctcaa gcagaagctg accggcgagg gcatcccgct
     2221 gatgaaggcc tccggcgagg gtgacgtgtt cctcgccgac ctgagcgccg atgtgcatct
     2281 gatcgacctg gaaggcccgg acgacgcgct gaccgtcaac ggcaggaacg tgctcgcgtt
     2341 cgagcccacc ctgagctacg ccgacccgca ggccgcggtc gcctggtccg cgggattgca
     2401 gaccgggttc caccgggctg accagctagg tctgggcatg ctgctgggcc gcagcaccgg
     2461 ggaggtgttc acgatgcgct tcgctggccg gggcttcgtc atcgtgcagc cttcggagga
     2521 gctaccggtg agcgtgctca gtggcagcgg gaatcagtcc ggatccggtg gtctcttcgg
     2581 tgacctgatg ggtcgctgag tagcgcccca gggatgcctg ccgtgcctgc tgatgacgct
     2641 cctgtcgtgc tgctcgacga ggagcggcgc ccgatcgggc agttacccaa gtcgcaggtc
     2701 catcatgctg cgacgccgct gcacctggcg ttctcctgct acgtattcga cggctcgggg
     2761 cagctgctca tgacccgccg ggccaccagc aaacggacct ggccgggagt gtggaccaac
     2821 acgtgctgcg gacacccgct gcctggcgag ccgctcgagg tggcggcggc ccggcggctg
     2881 catgaagaac tcgggctgac cctgacccgc tcagagctgg tactacccga gttcagttac
     2941 cgggcggtcg ctcccgaagg catcgtggag aacgagttct gccccgtgct ggtcgcccac
     3001 gcccagggcg tccccagacc ggaccccacc gaagtcctcg accactactg gagcccgtgg
     3061 ccgcacatca tcaccgtcgc cgccaattcc ccctggctga tctccccctg gtccgccctc
     3121 cagatccccc tcctcgccga gttccttcct cgacatggag acatatcggg gtgaaatgac
     3181 cgccatttac cccgatatgt ctccatgtcg aggaggggag tcgatgaggg cgtagagggg
     3241 aacggcgatg aagtacaggg cggcggcgat gaggagcagg tccggggcgc ggccgttcag
     3301 cggcactacg gtggcggcca gggcgatggc cagcacgtaa gaagtgttga acacggtgtc
     3361 gtagagggag aacacccggc cccgcgcgtc gtctgagacg tcggcttgca cggtggcgtc
     3421 caggctcagt ttcacgacct gacctgcggt ggcaaccacg aacaccgcag ccaggatcgt
     3481 tgacatgatc atgggtagcc cgagcgagag gatcgctact ccggcggcta cgagtgcccc
     3541 tcgcacagtg cgccgccgcc cgaagcgggc caccagcagc gggctgagca agcctgcgag
     3601 caacaatccg gcagctccgg ccgcgagcag ctcacagact ccggtgagcc ccgcccggaa
     3661 cagcccgtgg gaagtgaagg agttgcggta aagcagcagc gtcaccatgg tcgcgatgcc
     3721 aaaggacacc cggtgggcga cgagcgccgt caatcccgca gcgacgctgg gtacccgggc
     3781 cgccgcccgc agactgtccc gaagcccgct ggccagtgca ggagttgtct tcggcaaccc
     3841 ggtcgcgaac tggcaagccg ggcccagttc gccacgatga aagccggtcg cgatcaccgc
     3901 cgcgaccagc gagcccagca cagcactccc ggtgacccat gctgatccag cgttgcccgc
     3961 cccgatcaac ccacgcagcc cgatcgcgga gaccccgccc accactgtga acgccgagcc
     4021 caccgtggca gccagggcgt tggcctgcac caggtgcccc ggcggagcga catgcggcaa
     4081 cgcagcggag agcccggcca gcacgaaccg gctcaacccg gtcactagca acgctccgag
     4141 gtacagcggc gccccggcca caccgaggcc gacggcgagt gccaccagca ggatcggcac
     4201 ggtgcgcagg aggttcgaca ggatgaggat ccggcgacgg tcccagcggt ccagcagtgc
     4261 ccccgcgaac ggtcccacca gcgagtacgg caggaacagc acggcgagtc cggcggcgac
     4321 cgccatcgga gcggcctcgc gctccggatt gaacaggacg gcaccgccca acccggcctg
     4381 gaagaacccg tctccccact gcgtggcgaa acgggaggcc agcaaccggc cgaacccggg
     4441 cgtgcccagc agtcgccgca agccgagccg gtcggtcaca ctggctggga caaggatctg
     4501 cgacaacgtc acgagcatgc aggctaacgg tcttgggtgc cctgttgtga tcggtgtggc
     4561 atacgagacg atgaacgggc acgaggaacc aggcgaggtg agtgcagtgg acgtggtgga
     4621 agcgggatcg gcgctggtcg ccgcacctgg gctgcgggat cccaactttc gccgcaccgt
     4681 cgtgctgatc atcgagcatc agcctgcggg cacgatcggt gtcgtgctca accggcccag
     4741 cgaggtggca gtgcgcgacg tgctgccttc ctggagcccg cacgccacgg tgccgcgggc
     4801 gctttacgtt ggcggtccgg tgcagcagcg cgcggcactg tgcgtggccg cactgcccgt
     4861 cggagtggac gccgagctga ccgagggcat gatcgcagtg cgcggttcgc tggccctggt
     4921 cgatctggat gccgacccgg acctgatggc accgcgactg cggggcctgc gggtattcgc
     4981 cggatacgcc ggttggagcc agggtcagtt ggcggctgag gtcagccgcg gggattgggt
     5041 ggtggttccc gcattagccg acgacgtgct ggcgccgccc gataccgatc tgtggagccg
     5101 gatcctgcgc cgccagggca tgccgctggc gcttctggcc acctaccccg ccgacccgac
     5161 gctgaactga ttccgggtgc cgacccacgt cgcgctgctg cgcggtatca acgtcggtgg
     5221 ccctaaccgg gtcgccatgg cggacctgcg cgcggtggtg acttcccttg cgcttccgcg
     5281 agcggatcgg cgacgatgcg caattgggcg acggtgacga agctgctcgc catgtgcaac
     5341 ccttgatagg gcggcatgcg atgtatgccg ccgaccgttc cgaatggcac cgtgttcgac
     5401 gtgaattgtc atgtcgtagc gggaactggg ctcgaagatc gccgcatgcg atggtgatgc
     5461 aagcacgggg ctccagaact cgtggtctaa cctttgctcg atgcgccgaa tgtgggagat
     5521 gtccacagtg taccgtgaga ctggatttca tcggaatcgg aatgtaactg cgtggacaca
     5581 aagtcgcgat ggtccggtgc caccagtcgc tacatgccgt aatcatttat gtactaacag
     5641 ggttccgtca ctgtattgtt accgttgaga aaacttgtga acgctgtgct tgggcctgat
     5701 catcgagcgt gtgacccttg agggtatgga cgtgtctgcg acggacgtcg ccaaaatacc
     5761 tgcaagcaat atgcgggtgt ctcggacgga gtttgtggcg ctgtggcaga cagcggagcg
     5821 gcttcacgat gagcaactcc ggcggggggt acccgactgg tacggcgccg gtgtggtgga
     5881 gacctgtcgc tggcttgcca tcgtggaacc caaaacgggc ccaggccacc tcgcgccctc
     5941 gccggtaacc aaacgaatcc aagttgccta cgacgacttg atcgaaggcg aatgccaggc
     6001 cgcagagcag ctggctggaa gccggccagt gccggcccgt ttgatgagcc ggccaggatg
     6061 gatcgaagct gtcgtagcca cgttgaactg ggcgtggcgc cggcacggaa gcccaccgct
     6121 ggacaccggc cgcagcagat ggggctgaac cactccagtc gttggctgtg accctgtcga
     6181 gcctcaatag ttgacgcgga aattaccaat aaaggtgatc atgttgccgt cgggatcggt
     6241 cacggcggtc agctgcaccc ccttgttcac cgtctggacc tctcccggag agaggcctct
     6301 gctggccagt tcgtccaggt gggcggccag gtcgtccacg gcgaagttga gtagcgcggt
     6361 gcccgctcgg tccgggtcct cccacacttg cagccacccg gtgtcggtga cccgccactc
     6421 ggcgaggcct tccatcggat ggttgtctgg tgttcgccca agcaggtgtt cgtaccaatc
     6481 ccgggcagtg tcgatgtcgg caacgggaac gacggcaaga acgtgattga tcgccatctg
     6541 tggacagtcc tctctctcgt gaaggccgac aactatccga gttccgcttg agcagggttg
     6601 gctcgacgcc cacaccgggt ggtcggttgt gtcagcttgc cgcggccgtt actgcttttg
     6661 cagcaggacc tcgccctcga gaccgtccgg atcgcggaag aagatgctct gtgccgtacc
     6721 gaagtcattg atcgtgccgt cgctggctcc ggcctcgacc aaccggtccc ggatcgtttc
     6781 gaaggcctct ggggacgcgg cggccaaacc aacgtgatcg atacgacccc ggccccacat
     6841 cggggtctgg cgatcggcct cggtgttgcc gtcgatcaca aagatattca gctgcgtggc
     6901 cggcccgata tcgataacgg tcatcgtctc accgggtccg tgctcacgcg tggggccgat
     6961 gaccgcatcg aagaccgtcg cgtaaaaccg gcctagccgc tcgacgtcct tggagatcca
     7021 ggcgatgtgg ttcacgccat ccaacagcat cgttgactcc tcccacgacc tggtcgccac
     7081 accaccgtac tgttcttcgt gttctgtggc agctttccta cgttcccccg gcgtcgatga
     7141 atttccagga tctgggctgt ctacctgctg accgttccac cgaccttggg agcagacatg
     7201 ggcaggatcg tctccaactt cttcatcgcc cttgatggcg tcgtcgaggc gccccacgag
     7261 tggcacttct cctacttcga tgacgagatg ggtcgagtcg tcagtgaggg catgcagacc
     7321 cagaagtcat ttttgatggg ccgccggctc tacgacgagt ggtcgacgta ttggcctggt
     7381 caaggagagg atgtgccgtt ctcgtcgcca caacctcccg aagtacgtgc tgactcatcg
     7441 cccgatcgac ggcgatgtct ggaacaacac caccgtcctc gggaacgacg cggtcgggca
     7501 ggtgcagtca ctcaaggaac agaccgagca tgacatcggg atgtcgggat gcgcgacaac
     7561 ggtgcgctgg ctacttgccc agggtctgct cgatgaactc aacctgctcg tccacccgat
     7621 cgcagttggc aaggggcagc ggctgttcga cgacaccggc aaggtgccgc tgacgctgct
     7681 ctcatgcgat acgctgccga gcggtgtcct gcatctgcgg tatgcgcctg cggtggccga
     7741 atgaccggcg atcagctctg gtgtcgccga gttcgacacc agagcggggt ccagcgagct
     7801 gaaaagctct gatgtcgaac tcggcgacac cgcaccgttt ccctgtgatt cgggtgcgcc
     7861 gccgctggag ggctactact tcttgccgag gacgtccttg atggcatcct tgactttctc
     7921 accggcctgt ttgacgtggc cttcggcctg atcgccccgg ccttcggctt ccagctccgg
     7981 atcgtcactg gcctggccgg cagtttcctt gaccttgccc ttgagcacgt cagccttgtt
     8041 gtcgatcttg tcgtcgatac ccacggtacc cgcttcccct tgtcagaccg gtagcaaccg
     8101 gttcactgtc gtactgagcc tggcacgtgt tcgctggatg cgcctgtcga tcatagtgct
     8161 ggtccggcgg cgggtcatca cgggaatcga cctgtcggac agcgggaatt gaccgcgtgc
     8221 gatgcggtgc cgccagggga agtttaagga ggtcatcgcg gtgggtacgc cgcacagatc
     8281 tctcggtcga cagctcagca tggaggcttg gatggctctt gatccatcgg tcgacatcgg
     8341 ccgcagggtg tggcggccgt gttcgtactg cccgaacgag gacggcctgt acctgctcga
     8401 cgctgacgcc aatctcgtct acgtccaatg cggtttgtgc cacacctgtt ggtggttgga
     8461 caccgggtac ggggccggca agagacccaa ggatgccgaa aacccgccac aatggccagc
     8521 ctgatcgaca ggcccaagcc ggacgatcac cctaatttca gttctgcgat tggcgaatgg
     8581 gcgctgaccg tcgctggtag cgccctggct ggaacttccg ccgacgggag tcacgccatc
     8641 tctgcagcgc catggagcaa ggggagaacg acatgcttaa cagacgccag ctcaagggcc
     8701 gcaagattgc cgcgctgctg ccaaggttga cgtcgtgtcc ctgcggcgcg gacgtatccg
     8761 cggggtgaac ctgcacatgc cggccagccg ggtcggggtg gacaagacga tttgcgaaat
     8821 gaagatcttg tcctagacga gtgagagcga tccggagccc gcgacttgaa tgatctccga
     8881 tgggacacac tgggacacgg gacggcggca agcggcgcga tagattgaca aactatgaga
     8941 tggaaacgcc caggtcagcg gcaggtgccc cccgttgacg tgtacccgat cgggcccggt
     9001 caggagtcgg tgtgggatta cccccggcct ccccgagcgc agcgggtgtc ccggcgagct
     9061 cggatcgtgc atggaggcac gctcgtgctc gacaccgatg acctggtccg ggtgctggag
     9121 acctcgcacc cgccgaccta ctacttgccg cgctcggagt tccgggtgcc gctgctgcct
     9181 tcgtcgcggc tgacggtgtg cgagtggaag ggcgaggcgt gctacgtcga cgtggaggtg
     9241 cccggtgtcg cgtcactgcg cgaggtcggg tggtggtacc cgcagcccga ccttcgctat
     9301 ccacaactca ccgatcgggt cgccgtctat gctggccggt tcgatgaggt caccctggat
     9361 ggtgagctgg tgacaccgca gccgggtgag ttctacggcg gctggatcac cgcggggatt
     9421 gtcggcccgt tcaaaggagt ccccggcagc tggggctggt agctgttccc ccgagccgtc
     9481 catgccgggg agtgaggggc aacatcacgg tgccgccgag acatcagcga gccgtgtcac
     9541 gaaagatgcg cacagatgaa aagttcatat tgaaatcgcc ggtggtgtcc cttacgttcg
     9601 agtcgcatgt gaccacggag agtaaggggg ccggacggac aacctgggga tggctgactg
     9661 tgcgatgaca agtcaccggt gttgatatcg gggacactgc ctgcgctatg cgtgcgagag
     9721 cttctccgaa acgcacgttt tgattcgaat catatcctgc gtgggggctg taatcggtag
     9781 ctcgcttatg tgtagttttg catgcgcatg accagttttg tccgagatca tcggcgttcc
     9841 attgctcttc tattgaatcg aaggagcgtg catgaaaatt tcacagattt tcgcacaggg
     9901 tggcggccat ggacacggcg gtggctgtgg ctgcggcaac tgggttggcg atgagaaata
     9961 ccaccctact ggttactact accgccgcca cggcgactac tactgctaca acgacggttg
    10021 cggctacaag ccgcactccc acaggatcgc gctcctggac ggacttctca ctatcctcga
    10081 ctgaaatagc gacgagctca ggttgtcggc ggtggccgcg acccacattt tagtgggtgc
    10141 tgccccgccg actccgggtt gcgctgtgcc tcccggtgat caatcgctgt ggccgccact
    10201 acgtcagtgg atgcaggccc gccggcgccc gtgccgggat gtgacactac aaatccagaa
    10261 cgagaactga ctcgccattc ccgtccgttc agcagcagat gttccctgcg gcaatgggcg
    10321 gatcaatacg ccatcattca gcaggtttgg cgaagccgcc tgcggcagac cagtccggca
    10381 cgctggtcac cgaactggtc gcgctgtcgc ggccgcaagg gcgccgagcg gctcccggag
    10441 ctggccaccg tcgaggtcga cgaggtcgtt cacgaggcgc tggatcgttg ccggcttgcc
    10501 gccgagtcag ccaacatccg gatcaccgtc gacgtgccca gtggctgtta ctcaagggtg
    10561 atgcgacgct gctggtgacg gcgctgtcca acctgctgga caaggcaggg tcctactccc
    10621 cgtc
//
LOCUS       DASVXZ010000247         2417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1729330, whole genome shotgun sequence.
ACCESSION   DASVXZ010000247 DASVXZ010000000
VERSION     DASVXZ010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1729330"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2417
                     /locus_tag="VF788_04995"
     CDS             <1..>2417
                     /locus_tag="VF788_04995"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8933541.1"
                     /translation="PVSEYVPPRTETERVVAQAWAQVLGVERVGVEDNFFELGGDSIL
                     SIQVVSRARAAGVPVSTRDVFFAQTVAGLAAGVGTELVSGAVAGEVIEGPAPLTPIQH
                     WFFTTYGPLAHFNQSFAMELAEDVDWDALSAAVDAVVAHHPVLRMRFSCVEGQWSQEI
                     ATASDVVLQRSDLSGVAPADRRAAVEQAAGAAACGLDITGGPLLRVVMFDFGPGHRPW
                     LFIAVHHLVVDGVSWRILLGDLEIAYHQARTGSPVELEPVGTAFTQWAHRWVNHVQDG
                     GLDADLGYWSALNQDKPAQLPVARSGVNTADSARVVVARLGREDTDALLHRVPGAYRT
                     QINDVLLSALGRVLASWTGQDQVLIALEGHGREEILPGVELSRTVGWFTSLFPVVLRV
                     DHTGWGDLLKSVKEQLRAIPHRGVGYGALRYLNPDNQLAGDLSPQISMNYLGQWDTAG
                     KLDGLYRDWVGDLAPDVAPSSRRPFLLDVIGAVTDGQLQLSWTYSENVHDEETIRQLA
                     SDMVEALRRIVAHCTDPAAGGCTPSDFPLAAVSQTQLDALVGTGRDVEDVYRLTPLQA
                     GMVFHSLLDPDAASYVDQTQLRISGIADPQALGMAWQRVAARTPTLRSAVAWAGADEP
                     VQIVHRQPMVPITHLDWRELPESDQHQELTWISTAERAEIALDTAPLLRVVIAQLSTD
                     EIQLVWTFHHVILDGWSVAAVFTEVCGQYAAITQTRTPQLVARRPFRDYLHWLRERDE
                     QQAQQYWRSVLAGWESPTPLPFDRQPFEAHRTESSKTLRVTLTAEQSSRLREVTQRSR
                     LTMNTII"
BASE COUNT          389 a          710 c          866 g          452 t
ORIGIN      
        1 agccggtgtc ggagtatgtg ccaccgcgga ccgagaccga gcgggtcgtg gcccaggcgt
       61 gggcgcaggt gttgggcgtg gagcgggtcg gggtcgagga taatttcttc gagttgggtg
      121 gcgactcgat tctgagtatt caggtggtct cccgggctcg ggcagctggg gtgccggtga
      181 gcacgagaga tgtgttcttc gctcagacag tggcgggact tgccgcaggg gtaggaacgg
      241 agctggtctc cggggcggtg gctggagagg tgatcgaggg gccggctccg ttgaccccca
      301 ttcagcactg gtttttcact acctatgggc cgctggcgca tttcaatcag tctttcgcga
      361 tggagttagc ggaggatgtt gactgggacg cgctgtcagc cgcggtggat gcggttgtgg
      421 cgcatcaccc ggtgttgcga atgcgattct cctgtgtgga agggcagtgg tctcaggaga
      481 ttgccacggc cagtgatgtg gtgctgcagc ggagtgatct ctcgggtgta gcgccggcgg
      541 atcgacgggc ggcggtggag caggcggcgg gagccgctgc ctgcggtctg gacatcaccg
      601 ggggcccgct gctgcgggtg gtgatgttcg atttcgggcc gggtcatcgg ccttggttgt
      661 tcatcgctgt ccatcatctg gtggtcgatg gggtgtcctg gcgaatcctg ctgggtgatc
      721 tggagatcgc ctatcaccag gcccgcactg gcagtccggt ggagctggaa ccggtgggca
      781 ccgcgttcac gcagtgggcg caccggtggg tgaaccatgt ccaagacggt ggactggacg
      841 ctgacctggg gtattggtcc gcgctgaacc aggacaagcc ggcccagctg ccggttgccc
      901 ggagtggggt caacacggcc gactcggccc gggtcgtggt ggcccggcta ggtcgggaag
      961 acaccgatgc gttgctgcat cgggtgccgg gggcctaccg cactcagatc aacgatgtgc
     1021 tactcagcgc gctggggcgg gtgctggcgt cctggacggg acaggatcag gtactcatcg
     1081 ccctggaagg tcacggccgt gaggagatcc tgcccggcgt ggagctctcc cgcacggtgg
     1141 gctggttcac ctccctgttc ccggtggtac tgcgggtaga ccacaccggc tggggtgact
     1201 tgctcaaatc ggtgaaggaa cagctgcgag ccattccgca tcgaggtgtg ggttacgggg
     1261 cattgcgata tctgaatccg gacaaccagc tggctgggga tctctcgccg cagatcagta
     1321 tgaattatct gggccagtgg gacaccgcgg gtaaactcga cgggctttac cgggactggg
     1381 tgggagacct ggcacccgat gtcgcgccct ccagcaggcg tcccttcctg ctggatgtga
     1441 tcggagcggt aaccgatggg cagttgcagc tgagctggac gtattcagag aatgtgcatg
     1501 acgaggaaac aatcagacag ctggcctcgg acatggtgga ggcgctgcgg cggatcgtgg
     1561 cgcactgcac cgacccggct gccggcggct gcaccccgtc cgatttcccg ttggcggcgg
     1621 tatcccagac ccagcttgat gcgctggtcg ggacgggccg ggacgtggag gatgtgtacc
     1681 ggttgacccc gttgcaggcc gggatggtct tccacagcct gctcgatccc gacgcggcct
     1741 cctacgtgga tcaaacccag ctgcggatct cgggaatcgc tgacccacag gcgttgggga
     1801 tggcctggca gcgggtggcc gcacgcaccc ccaccttgcg cagcgcggtc gcctgggccg
     1861 gggccgatga gccggtgcag atcgtgcacc gccagcccat ggtgccgatc acccacctcg
     1921 actggcgaga gctccccgaa tccgaccagc accaggagct gacctggatc agcacggccg
     1981 aacgcgccga gatcgccctg gacaccgcac cgctgctgcg cgtggtgatc gcgcaactga
     2041 gcactgacga gatccagctg gtctggacct ttcaccacgt gattctcgat ggctggagcg
     2101 tggccgcggt gttcaccgag gtctgcgggc agtacgcggc gatcacccaa acccgcaccc
     2161 cccaactggt ggcccgccgc ccgttccggg actacctgca ttggcttcgc gaacgggatg
     2221 agcagcaggc gcagcagtac tggcgcagcg tgctggctgg ttgggagtct cccaccccac
     2281 tgccgtttga tcgccaacct tttgaggcgc atcgaactga gtcctcaaag acccttcggg
     2341 tcacgctcac ggccgagcaa tccagccggt tacgtgaggt gacccagcgc agccggctga
     2401 cgatgaacac catcatt
//
LOCUS       DASVXZ010000248         3316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_909736, whole genome shotgun sequence.
ACCESSION   DASVXZ010000248 DASVXZ010000000
VERSION     DASVXZ010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909736"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1404)
                     /locus_tag="VF788_05000"
     CDS             complement(<1..1404)
                     /locus_tag="VF788_05000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
                     /protein_id="HEX8933542.1"
                     /translation="MSDRQDRLRAYRAKRDFAVTAEPAGTSEPAAGSGRFVVQRHRAR
                     RLHYDLRLEIDGVLVSWAVPRGPTLDPKARQLAVHVEDHPVEYFDFEGVIPRGEYGGG
                     DVIVWDWGTWQLSGTDDPARAVERGELHFDLQGAKLAGRFLLVRSGEASSGKEQWLLI
                     HKKDEHARPGWDPEEHPRSVKSGRTNDEVAAAPESMWRSDLPPSQGAVSLARMPAPAW
                     DPPTGDELAALDALGVKGRWAVQGHEITLTNLDKVLFPPRDSEPPVTKRDLIRYHAVI
                     APYMLPYLAGRPVNAHRYPNGVQRPGFWHKEVPSYAPPWLTRWHNAEAEPGKTQCYAV
                     IDSVAALAWMANYAAVELHPWTSALPDIHQPTWALIDIDPGPATSFDDVLVLARLYRV
                     ALEHLGVAAMPKVTGQRGVQIWVPVRAGYSFDDTRAWVEKLSRAIGRTVPELVSWEWQ
                     KDRREGLARLDYTQNAIN"
     gene            complement(1478..2458)
                     /gene="ligD"
                     /locus_tag="VF788_05005"
     CDS             complement(1478..2458)
                     /gene="ligD"
                     /locus_tag="VF788_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEX8933543.1"
                     /translation="MATTRSELPEPVAPMLATAGTPPSGPGWAFEFKWDGVRAIAAVA
                     RGQLRLFSRNGNDITGGYPELTVLGELVEGRPALLDGEIVTLSQAGRPEFGLLQQRMH
                     VRSPSPELVGRVPISYYAFDLLNLDGRRLLQQSYQQRRELLAALDLDNGSPLVRESPN
                     YTDVTGRALLEVARQHGLEGVVGKRLRSRYEPGRRSPAWIKTALFHTQEVLVGGWTIG
                     QGRRAGTLGALLLGAHDEQGRLRYLGDVGTGFTETILADLLTRLTTLEQPDSPFDEPV
                     PRAHARRARWVRAELVGEVEYRSVTLDRRLRHTAWRGLRTDKDPAGVRFD"
     gene            2757..2984
                     /locus_tag="VF788_05010"
     CDS             2757..2984
                     /locus_tag="VF788_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8933544.1"
                     /translation="MNHKTARANLRNSTQWRKSSYSFPDGQECVEITTELTEWVGVRD
                     SKLGDDSPVLAFTAAQWRAMLSKARTGQLDI"
     gene            complement(3019..>3316)
                     /locus_tag="VF788_05015"
     CDS             complement(3019..>3316)
                     /locus_tag="VF788_05015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933545.1"
                     /translation="IPIPLSVEVTQVLTARHCAPAVLAHPYAPEHHMVLTGEKFGAAL
                     PWPSGVYELSGSVMLPPTITIGGPITWVQPPSKDSLRLSREIDVFGALRTVIRD"
BASE COUNT          568 a         1117 c         1090 g          541 t
ORIGIN      
        1 gttgatggcg ttctgcgtgt agtccaggcg ggcaagacct tcccggcgat ctttctgcca
       61 ttcccagctg accagttccg gcacggtccg gccgatggcg cgagagagtt tctcaaccca
      121 ggctctggtg tcgtcgaagg agtagccggc gcggacggga acccagatct gcacgccccg
      181 ctggccggtg accttcggca tcgccgcgac accgaggtgc tcgagcgcca cccggtacag
      241 ccgggcaagc accaggacat catcgaaact ggtggccgga ccgggatcga tgtcgatcag
      301 cgcccaggtg ggctggtgaa tatccggcag ggctgaggtc caagggtgca gctccaccgc
      361 cgcatagttt gccatccagg cgagcgcggc aacgctgtcg atgacggcgt agcactgggt
      421 cttgcccggc tcagcttcgg cgttgtgcca gcgggtcagc cacggcggcg cgtagctggg
      481 gacctccttg tgccagaagc ccggtcgttg cacaccgttg ggatagcggt gcgcgttgac
      541 cggacgaccg gccaggtagg gaagcatgta cggggcgatc acagcgtgat agcggatgag
      601 gtcgcgtttg gtgaccgggg gctcggaatc ccgcgggggg aagagcacct tgtccaggtt
      661 ggtcagggtg atctcgtgac cctggaccgc ccaccggccc ttgaccccga gcgcatccag
      721 cgcggcgagc tcgtccccgg taggtggatc ccaagcaggg gccggcatcc tggccagcga
      781 gaccgcgccc tggctcgggg gcagatcgct gcgccacatc gactcggggg ctgcggcaac
      841 ctcatcgttg gtgcgcccgc tcttgaccga gcgggggtgc tcctcaggat cccacccggg
      901 ccgagcgtgc tcgtccttct tgtggatcag tagccactgt tctttgccgg agctggcctc
      961 accggagcgg accagcagga agcgacctgc cagcttcgcg ccctgcaggt cgaagtgcag
     1021 ctccccgcgc tcgaccgctc gagcgggatc gtccgttccg gacagctgcc acgtccccca
     1081 gtcccacacg atgacgtcgc ccccgccgta ctcgccgcgg ggaatgacgc cctcgaagtc
     1141 gaagtattcg acggggtggt cctcgacatg gaccgccagc tgcctggcct tggggtccag
     1201 cgtcggcccc cggggcacgg cccagctgac cagcaccccg tcgatctcca accggaggtc
     1261 gtagtgcaag cggcgagctc gatggcgttg cacgacgaac cggcccgagc cggccgccgg
     1321 ctccgatgta ccggctggct ccgcggtgac cgcgaagtcg cgcttggccc ggtaggcccg
     1381 aagccggtcc tgccggtcgc tcaccgcgca ccaccacccg gcatgcgcca gcacgtcata
     1441 ccggtcatca tcggccacac cggcggcaac ggcatcttca gtcgaatctc acgcctgcgg
     1501 gatccttgtc ggtccgtaac ccgcgccacg cggtatggcg cagccgacgg tccagcgtca
     1561 cgctccggta ctcgacctca ccgacgagct cagcgcggac ccagcgcgcc cggcgagcgt
     1621 gcgcgcgagg caccggctcg tcgaacgggc tgtccggctg ttccagcgtg gtgagccggg
     1681 tcagcaggtc agcgaggatc gtctcggtga acccggtacc gacatcaccg aggtagcgca
     1741 accgcccctg ctcatcgtgg gcaccgagca gcagcgcccc cagcgtgccg gcccgacggc
     1801 cctgcccgat cgtccaaccg cccaccagga cctcttgcgt gtggaacagg gcggtcttga
     1861 tccacgccgg cgagcggcgt ccgggctcat atcgcgaacg caaccgtttg ccgacgacac
     1921 cctccaagcc gtgctggcgg gcgacctcga gcagcgctcg gccggtcacg tcggtgtagt
     1981 tcggggattc ccggaccagc ggcgacccat tatcaaggtc aagagccgcg agcaactccc
     2041 ggcgctgctg gtaactctgc tgcagcagcc ggcgaccgtc gaggttgagc aggtcgaacg
     2101 cgtagtagga gatcgggact cggcctacca gctccgggct cggtgagcgg acgtgcatac
     2161 gctgctggag cagcccgaac tccggacgcc cggcctggct caacgtcacg atctccccgt
     2221 cgagcagcgc cggcctgcct tcgacgagct cgccgagcac ggttagctcg ggatacccgc
     2281 cggtgatgtc gttaccgttg cggctgaaca gccgaagttg acctctcgcg acggcggcga
     2341 tggcccgtac gccgtcccac ttgaactcga aggcccaacc cggaccggac ggtggcgtac
     2401 cggccgtggc cagcatcggc gccaccggct cgggtagctc agatcgggtt gtcgccatca
     2461 acccacagtg tgctcgccaa gcagacccgg tgccgccaca acctgggcac tatcgtcgat
     2521 cgaatggatc cgagcatgtc ctgctatgtg ggcagccgag ccagttggct aatcgcaagt
     2581 gcaaaagcac tgtcgattgc actcgcggtt gcacctctac tgggggaatt ccacgatcgg
     2641 tatcacggac cggtggtctg gcccgtatat tgatttaacc cctttgttga cctgtggatt
     2701 cggcacggcc cggagagatc gcgggccgag ttgatccgct acgtggagga gatatcgtga
     2761 accacaagac cgcgcgggcc aaccttcgca acagcacgca atggcggaag tcgagctact
     2821 catttccgga tggtcaagaa tgcgtggaga tcactactga actgaccgag tgggtcggag
     2881 tccgagacag caagctcggt gacgacagcc cagtgctggc cttcaccgca gcccagtggc
     2941 gagccatgtt atctaaggcc cgcaccggcc agttggacat ctgatcaccg gggatccaac
     3001 catggtacgg cagcgccact agtcgcggat gaccgtgcgc agggccccga agacgtcgat
     3061 ctcccgggac aaccgcaatg agtccttact cggcggttgt acccaggtga tcggcccacc
     3121 gatagtgatc gtcggcggca acatcacgga tccgcttagc tcgtatacgc cagacggcca
     3181 aggcagcgcg gcaccgaact tttctcccgt gagcaccatg tggtgttctg gggcgtacgg
     3241 gtgggccagc accgccggag cgcaatgccg ggcggtgagc acctgcgtca cctcgacgct
     3301 cagcggtatt gggatc
//
LOCUS       DASVXZ010000249         3337 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1192387, whole genome shotgun sequence.
ACCESSION   DASVXZ010000249 DASVXZ010000000
VERSION     DASVXZ010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1192387"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(191..571)
                     /locus_tag="VF788_05020"
     CDS             complement(191..571)
                     /locus_tag="VF788_05020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933546.1"
                     /translation="MERFTEVVLRHRPAVTLLWLALLVSGLATAGQLSDRLSFDFSLP
                     GQPGYETELQLLTTYAAGTAVVVLGLLIGPVFDVRIGQSRVDSLSSSGTAFDTVTQLR
                     QGGVVPAYSHPSKCWYPLTAPRPR"
     gene            complement(835..1254)
                     /locus_tag="VF788_05025"
     CDS             complement(835..1254)
                     /locus_tag="VF788_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010315529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03668 family PPOX class F420-dependent
                     oxidoreductase"
                     /protein_id="HEX8933547.1"
                     /translation="MELAEDEARTRFLTVPVVRLATADDLGQPHIVVTTFVVTNDVIF
                     TAVDSKPKQSRNLKRLRNVKINPRVSVLADRYEDDWTQLWWARADGTATVIEDEDGMA
                     EPIRLLGEKYWQYRRNRPDGPVIAVTVERWTGWTYSR"
     gene            2965..3159
                     /gene="yidD"
                     /locus_tag="VF788_05030"
     CDS             2965..3159
                     /gene="yidD"
                     /locus_tag="VF788_05030"
                     /inference="COORDINATES: protein motif:HMM:NF013932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX8933548.1"
                     /translation="MRSVPVEARVVFSPTCSEYAAQALQIHGARQGSWLTIKRLCRCQ
                     PRRRTVNDPVPPPSACSPGQ"
BASE COUNT          593 a         1120 c         1019 g          605 t
ORIGIN      
        1 gcgcgcccgc cccggtgatg ccgacctccc caccggtggc cgcctgcacc gcggtgcgca
       61 cggcatcgac cactgcggtg ccgtcgccgt ccacggtctc cgcgccgggc agcacgtcca
      121 ccagcgcgct gcccggcgcg ggtgctgccc accacggcgg cgtgcacgcc ggccacacgt
      181 cgggctgcgg tcaccgcggc ctcggcgcgg tcagcgggta ccagcacttc gatgggtgtg
      241 agtacgccgg aaccaccccg ccctggcgca gctgggtgac ggtgtcgaag gcggtcccgc
      301 tgctggacag cgaatccacc ctggactggc cgatgcgcac gtcgaacacc ggcccgatga
      361 gcaggcccaa taccaccacg gcggtaccgg ccgcataggt ggtgagcagc tgcagttcgg
      421 tctcatagcc gggctggccg ggcaaggaga agtcgaagga aagccggtcg ctgagctggc
      481 ctgcggttgc cagcccgctc accagcagcg cgagccagag cagggtcacc gcaggccggt
      541 gccggagcac cacctcagtg aaacgttcca cggtcctcca gcgactcgga cgccggcacg
      601 gctgcgcgcc gggtctcagc tgtgatgaac tcgagcgagg ggatcgatcg cagctacacc
      661 gctacattcc tgtgatcccc gagaggtggc cgaccggacg ccggcgccgt ctcaatgggt
      721 aatttgccga catgacaggc gcatctctcg ggcgggaaca ggggatggcc accgcccatc
      781 cgctggatgg cctgatggac ccagcaggtc gagatttcga ccatcgaccg atcctcagcg
      841 cgagtatgtc cagccggtcc agcgctccac cgtcaccgcg atcaccgggc cgtcaggacg
      901 gttacgccgg tactgccagt acttctcacc cagcaaccgg atgggttcgg ccatcccgtc
      961 ctcgtcctcg atcactgtcg cggtgccgtc agcgcgggcc caccacaact gagtccagtc
     1021 gtcctcgtag cggtcagcga ggaccgaaac acgcggattg atcttgacgt tgcgaagcct
     1081 cttcaagttg cggctctgtt tgggcttgct gtcgaccgct gtgaagatca catcattggt
     1141 gacgacaaag gtcgtcacca caatgtgagg ttggccgagg tcgtcggcgg tggcgagacg
     1201 caccactggc acagtcagga agcgcgtgcg cgcctcatcc tctgccagct ccatcgtccc
     1261 cacgcgttgt ctggtcactg gagccgccgc ggggctcagg tgagaccggt cagtcgaact
     1321 cgccgacctg aacaccggtg gtaaacgcgg ccgtccggtg gacgtgaaga tcagagccgg
     1381 gccggtgggg ttcttggagt cccggacggc acggtagccg cccggaagac cggcaacctc
     1441 aaccggctcg ctgaggatgt caccgtagtc ctgccaccaa cccggctcgg ccgatcaccg
     1501 gcgcagctcg tcgagcctgc gggcgtccac ctcggggata ccgagcacct cgacccgtcg
     1561 ttccagcgcc actgggcggc aactatcccc gcaatctcac aattccccac acgccccccg
     1621 atctccccga catggagaaa tgtcggggag atctagcgct gattaacccc gatatgtctc
     1681 catgtcgggc aacggtgggg atgggtgccg gttacccgag gatcccgaga agtcctctac
     1741 cgcggctgaa actttggttg cggaagccac cattgaatcc actacggttg tagccattgt
     1801 agtagccgta gctgaagcgg cccccgtaaa agccaccaga gctgtagtaa ttcccgtggt
     1861 gccgctcacc gccgtgtcca caaccgccac ccgttgtgaa gatttctgaa accctcatat
     1921 tatttccttt ccggtcggtg cagggaccat gcaagccaca cagccccgga cgatctgaac
     1981 atgccattat tggacgattg ctgccgctaa ttttcctgcg aggtaacggc tttatcggtg
     2041 ctctggagac ctcggcgctg ctcacagatt ttcgcaagct caggcaacgt ctccgtgatc
     2101 tgcttcatcg catcgaagtg cgatcttgaa aaaatcgggt aatcggtttt taacgttcga
     2161 tcgccaagga ctaccaccaa ctctttcccg tgacccccgg gcgtggtacc tcccccgtac
     2221 ggttggactt tcgcagcgac gtgacccacg gtttgaagcg accttctctt cgtgacgcaa
     2281 ccgtgaccat gccgccggta cacagcctgc gtggaagctg atgttcgggc agggctcttc
     2341 aggggtcccc cccgaattca gtaccgtgac cggcagctgg ccgagttgat cactgctcgg
     2401 agagctggtg cgaaccgttc tgcggccgtt ctggggaatg tgaaaaagct gctcggtgca
     2461 tcgtgctcag cgcctgcctc gcccgcgaag ttggcatccc cggcaccggc cactacatcc
     2521 atgaagaaca gccgtcgaga ttgcccgcgc cctggtgcag ttcctcggct gaacgcgctg
     2581 ctgtcgaccg cgcaggcgac tcagccgcgc aatcgcacca cctgacgaca ttcgagcggc
     2641 caactctgac ccggtaggac cggcctccgg cgtgcacact ggcaagatgg cctgtttccg
     2701 acgaaggcgt tatgaccccc gctaggacta tcgctaccga cgtgggccgg taggtagggt
     2761 cctgtcttcg agatgcctgc ctgctcgacg ctggatgctg tatcggggag agtctcagcg
     2821 gcgattgcct gatcttgacg gtgctggctc ttcctcaact gaccgcagca ttgctcgccg
     2881 aggcccggac cctccggcgg gagagagcta cggcaaactc gggacttaca gcgctgctgg
     2941 tcgccggtat ccggacgtat caacgtgaga tcagtccccg tcgaggcccg tgttgtcttc
     3001 tcaccaacct gttcggagta cgcggcacag gcgcttcaga tccacggcgc tcgacaaggg
     3061 agctggctca ccataaagcg gctgtgtcgc tgtcaacccc gcaggcgcac ggtcaacgat
     3121 ccagtgccac cgccgtcagc gtgctcgcct gggcagtagg agatcgtgtg cggtcgattc
     3181 agtcgccacg atcggaccac agtctggcga ttcttcgatc cgcctgggcg tcccggcgcg
     3241 gcacccaggc ggatcgatcg gcaagtccta gcctgcgcct ccgccgtagc tgatctcatg
     3301 agggttttcc cctaccgaac cctggttcaa accccgg
//
LOCUS       DASVXZ010000250         1953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1729589, whole genome shotgun sequence.
ACCESSION   DASVXZ010000250 DASVXZ010000000
VERSION     DASVXZ010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1729589"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1292
                     /locus_tag="VF788_05035"
     CDS             <1..1292
                     /locus_tag="VF788_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933549.1"
                     /translation="PVGWFVARFFSQRIKAASREVRQRSGSISTVAEESLGNVTLIQV
                     YGRQQAEVTRFTDQSLSSVIAELAATRLRAVFSPLTDLLEVAGVLVVIGMGVWELTSD
                     RITLGGLLVFLVYLSQLYSPVRGLGQLSNTVYAAATSAERIIDLLDAQPEVCAPTHPV
                     RLRRPRGELAVDRVSFRYPDTVANALSEVSFTVPPGCGLALVGASGAGKTTLTKLLLR
                     LHDPATGTIRLDGIDVRDLDPEQLRANMAVVLQETLLLDGTIAENILVGRPDATQHEL
                     VAAAEAADAHEFITALPEGYDTRVGQRGRLLSGGQRQRIAIARAMIRDAPVLILDEPT
                     TGLDAQASARLLTPLRRLMTGRTTIVISHHLTTVTEVDQIVYLDHGRITETGTHRQLL
                     SRNGGYAHLYRLCHPASPGRHHIAAEVPIPAEPVRLR"
     gene            complement(1705..>1953)
                     /locus_tag="VF788_05040"
     CDS             complement(1705..>1953)
                     /locus_tag="VF788_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933550.1"
                     /translation="ELARLNRAMASLALRVMDGSAGSAEQRDYGQRLIAVGERLRRRA
                     DGETSHPVVVEGTMLLGNGDSLALPGHGVEPYWNRARD"
BASE COUNT          351 a          732 c          537 g          333 t
ORIGIN      
        1 tgccggtggg ctggttcgtc gcccgcttct tctcgcagcg gatcaaagcc gcgtcccggg
       61 aagtccgcca gcgcagcggc tcgatcagca cggttgccga ggagagcctg ggcaacgtca
      121 ccctgatcca ggtctatggc cggcaacagg ctgaggtcac ccgattcacc gaccagagcc
      181 tgagcagcgt catcgccgag ctcgctgcca cccgcctgcg cgcggtgttc tcgccgctga
      241 ccgacctgct cgaggtggcg ggggtcctgg tcgtcatcgg gatgggggta tgggagctga
      301 ccagcgaccg catcacgctt ggcgggctgc tggtcttcct ggtctatctc tcccagctct
      361 acagtccggt ccgcggcctc ggtcagctct ccaacacggt ctacgcggcc gccaccagcg
      421 ccgaacgcat catcgacctg ctcgatgctc agcccgaggt ttgcgctccc acccaccccg
      481 tccggttgcg tcgccctcgc ggagagcttg cggttgatag ggtgagcttt cgctaccccg
      541 ataccgttgc caacgcgctg agcgaagtca gcttcaccgt gcccccagga tgcggcctcg
      601 cgctggtagg ggccagcggc gccggcaaga ccacgctgac aaagctgctg cttcggctgc
      661 acgatccggc tactggaacg atccgcctgg acgggatcga cgtccgagac ctcgacccgg
      721 agcagctccg cgccaacatg gccgtcgtgt tgcaggagac cctgctgctg gatggcacca
      781 tcgccgagaa catcctcgtc ggccgcccgg atgccaccca gcacgagctg gtagctgccg
      841 ccgaggcggc cgacgcccac gagttcatca ccgccctacc tgaggggtat gacacccggg
      901 tcggtcaacg cggccggttg ctctccggcg ggcaacgcca acgcatcgcc atcgcccgtg
      961 ccatgatccg cgacgcaccc gtgttgatcc tcgacgagcc caccactggt ctcgatgcac
     1021 aggccagcgc acgcctcctg actccgctgc gccgcctgat gaccggccgc accaccatcg
     1081 tcatctcgca ccatctcacc acagtcaccg aagtcgatca gatcgtctac ctcgaccacg
     1141 gccgcatcac cgagaccggc acccatcgcc agttgctctc ccgcaacggc ggctacgccc
     1201 acctctaccg gctatgccac ccggccagcc ccggccggca ccacatcgcg gcggaggttc
     1261 caattccggc agaacctgtc aggcttcgct aaggaggggt tcgtaccgag ccgcctcatc
     1321 cggcgcaact aacgttctca cgcaatggtg ggaggcaacc cagcgagcag atgcggggta
     1381 agaaatcatc gcctctgatg gccaacaaca gtcccgtccc cacgaactac ccgcctctcc
     1441 cgtgtcacca tcatccgcac agcttcatcc gggccaactc aagcatccgc accacctcat
     1501 tgaccacccc ggctccataa tcgcttccca tgtaaacggt gcgcaataga catccgcact
     1561 gtgcctcgta ccaccgtcac agccacggtc gtatgttctc cctgagccgc tctgacagga
     1621 attctacgga gcatgccggc tgtagtcgca tacgtaccct gtccatcagt cgacattcca
     1681 ggctcaggct gtgccgaaac acggttagtc acgggctctg ttccaatacg gctcgacacc
     1741 atgccccggc aatgcgagcg aatccccgtt ccccagcagc atcgtgccct caacgaccac
     1801 cggatgactc gtctcgccat cagcccgtcg ccgcaaccgt tcccccacag caatgagccg
     1861 ttgtccgtag tcccgctgtt cagcagaacc ggcactcccg tccataacgc gcaaggccaa
     1921 tgacgccata gccctattga gccgggctag ctc
//
LOCUS       DASVXZ010000251         4007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_295844, whole genome shotgun sequence.
ACCESSION   DASVXZ010000251 DASVXZ010000000
VERSION     DASVXZ010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4007
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295844"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(682..1002)
                     /locus_tag="VF788_05045"
     CDS             complement(682..1002)
                     /locus_tag="VF788_05045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933551.1"
                     /translation="MPDALSFMEIKRQHVELLPARTVMSMICCTPSTGTTAASGTTGT
                     GSSTTGTTAAAGTGGAGNGTTITGNTIFVFFIDGNQYNTVTGGASGTTGAASTSGTAT
                     GGAS"
     gene            complement(1666..1809)
                     /locus_tag="VF788_05050"
     CDS             complement(1666..1809)
                     /locus_tag="VF788_05050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933552.1"
                     /translation="MSLAKELGTTIRIAITEWPQTLRLISLLAAMTAPVSLIVVLVIL
                     LRS"
     gene            3140..3565
                     /locus_tag="VF788_05055"
     CDS             3140..3565
                     /locus_tag="VF788_05055"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8933553.1"
                     /translation="MIDTDWSPQTSPCCSGMPVITVALSRPQPDTTVCTVTGAVDWNT
                     TPLVRDALTEARRDGNVHLVIDLSAVTSMDSAGPYTLLEARFKHHLGGGGHLAVIADP
                     NSHAIPELQIVALKASFDFHANLADALHACASADTSTGH"
     gene            complement(3759..>4007)
                     /locus_tag="VF788_05060"
     CDS             complement(3759..>4007)
                     /locus_tag="VF788_05060"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Scr1 family TA system antitoxin-like
                     transcriptional regulator"
                     /protein_id="HEX8933554.1"
                     /translation="LRVLPFAAGAHPGVDGSFTVLEFSDPSNPRIVYLDRMTDSEYLE
                     GLRDVAAYRHAHERLRASALSVSDSREMISSLLRELRR"
BASE COUNT          738 a         1202 c         1239 g          828 t
ORIGIN      
        1 tctcggtcgg ggaccgacag gttgaccagg acgctgttag gcagaagacc gcgataggca
       61 gtttgccagg attcgacatg cacagcggcg atagcatgcg cgtcacccgg gtgggcattc
      121 cggatctcgg ccacgatatt catgctgtca cgccgcgacg ttcgggacgg catcgctgaa
      181 acctgcggac gctcaaattc cggcttacag gcagctcgtc cgccccacgc cttgccacct
      241 gcgccaatag gcggacgcgt cggggttggc cgggaggaac gttctcgcta cttcgccacg
      301 gttctcagta cttctcgacg ttcgacggcc cagcgacgtc ctgaacgtcg atcttgcacg
      361 ccggggtggt gtggagtccc gtcggcctgg cggagcccga ccgctcgcca gctcgggcgc
      421 agccctcgac agaaccgtca cgtgcgttat ccggctctgc cccgggctgg cgtgtggtag
      481 cccttggggg aggtcgaggg gacaccacac cccgtccacc cgatcccgcc ggcggcagtt
      541 tcgggtggct ggccatcccg gaggtctgtc cgcccggcga gggcatggct cttgagattg
      601 acaagatctt ctgggagaac ggcaccccat taggaatggt tcgtcagtaa caggctgtgc
      661 gtagcgtttg acgtgctcga ctcagctagc accaccagtg gcggtcccgc tggtgctggc
      721 agcgcccgta gtgccgctag cgccgccggt gaccgtgttg tattgattac cgtcgatgaa
      781 gaagacgaag atcgtgtttc cagtgatggt cgtaccatta cccgcgccac cagtgccggc
      841 ggcagccgtg gtcccggtgg tgctgctgcc ggtgcctgta gtgccgctgg cggcggtagt
      901 gccggtgctg ggggtgcagc agatcatcga catgacggtg cgcgccggta gcagttcgac
      961 gtgctgtcgc ttgatctcca taaaactcag tgcgtcaggc attaggtcgt cctcctagaa
     1021 caaggtgtcc cgatgaatcg gggcacagcc agcacctcat cggcgttatg tccgacttgg
     1081 tctccatact gtgcctagga gaaaggccag gcggcaatca gtagtgtcac gtaaatccgc
     1141 agatagatta cttaggccga aagggtcgcg cccggcgaag tggtgtatga gatgaccggg
     1201 cgtgatcctg tggttacttt taggtgttag tgtttcagtg gtcacggttg acccaccgct
     1261 agcggttcaa atccgacgct ggtctcgtaa ctagcgatta gcaggacgca ctaccggaca
     1321 gtgccggtca tgaccgaaca gttcatctgg ccagcgcaga tacttttcaa cggtacgcac
     1381 tggtaccgga tgttgagggt tgtttcaggt aggtaaaggg cggagatgat cacgggctgg
     1441 tctccttaac ggtccgcatg agggcgaagc aacgggatgc agacggtttc gctgtggcgt
     1501 ttgtgatgtg gccgtgcggt agcccacccg gaagtcgagg ggatgccacg gtctgcttgt
     1561 ccgccgcggt ttttgtgctg ccctgttccg ttgacactca cagatcttta gttagccggt
     1621 cagcaagttc cgtccttttc ggtgtagcta ctgccagcgg caggcctagg agcgcagcag
     1681 tatgacgagc acgacgatca gcgataccgg ggcggtcatc gcggcgagta ggctgatcag
     1741 gcgcagggtc tggggccatt ccgtgatcgc gatccggatc gtggtgccga gttctttagc
     1801 caggctcact tcccctcacc ttcttgtgcg tccgtggtta cccgttgggg ctcaccttgg
     1861 ggctcatggc atcggcgtgg caacggttgc gcctgtgttg tcttgctggg ctgatggcca
     1921 gcgcgcaatc accgtgcaat gtcctgcggt ggccctggtt gtgggttcgt cgtggcatag
     1981 tcgtcggtgg gaggcagaca acagggagtg tttcgcgatg cgtatgacga cgccgttgga
     2041 acggccctgc cggcgggtgc cgatccattc atgcgcagac aaggaattca gcagatccgg
     2101 gataaggtgc aggactgcgg caaggccgcg ctctgctcgc aggcggggat cccaccgata
     2161 gaagcgttcc attctacgcc gaattgagtt acgcgctcct tatttcctcc cgtatccgat
     2221 gcctcaggct ccgcctcggc tacggcacgc agatttcacg cgcatgacga agaaggcttc
     2281 cgtaagccgc tggtacgctt gaatcttctg atcacgacgc cactttttta attctgattt
     2341 cacgtcccag gctcgaccaa ccgctaagcc caatagcaca ccggctgcac caattagcgc
     2401 cgctgtcgtt gtcggaggca cgatgcctac ttctcctttt gatccaaaca ctccaagtgc
     2461 gcatgtagga gaaagtatgc acacgttgac gaccatgccg gtccccgtac acgtcctgtg
     2521 ggagatcgct ggctagttcg accaccaaca cagcacctcc tgcacctcct gcgccacgtc
     2581 gatcaccccc gcaggcgaag tactgtcaac cttgctgagt actcctgcgt ccccggcccc
     2641 gagatcggct ccgaatatgg agagccccgc taacggggca tttagatcat caacggatct
     2701 tgggacacgc acagagcgga tcgggtggcg gtggccctcc tgagcttttg ctggtcgcgg
     2761 agggcgctgc cgccgtagcg aggggctgag cgaggcacca ggggaccgcg tggtgcgctt
     2821 actgacagta aggaacagtg cggggtagcc aggtttcacc tgctgagaag ggggaattgt
     2881 gtgtctaccg tttgtaatcg cttgtcgact gcggaacgtt acatatcgtc acgaaccgta
     2941 gtatcgtgtg cctgaccagg cggttgtagg gccatccact cagacggtga gattgcatcg
     3001 tgaatgaaat tgcacgttgc cgtagaggat gtggcagtgt aaattgcata tacgcgtgcg
     3061 cggtcaccga cggtgatggt gccgttgcgg ctgtgtccag gtttcgtctc caccgcattc
     3121 gcgggacagg agttggacca tgatcgatac ggactggtcc ccgcaaacct caccgtgctg
     3181 ttccgggatg ccggtcatca ccgtggcatt gagtcggccc cagcctgata cgacagtgtg
     3241 caccgtcacc ggtgcggtgg attggaacac cacgccgctg gtgagagatg cactcaccga
     3301 agcacggcgg gacggcaacg tccacctcgt catcgacctg tccgccgtca cctccatgga
     3361 ctcggctggt ccctacacgt tgctcgaagc ccgttttaaa caccatctcg gtggcggcgg
     3421 tcatctagcg gtcatcgccg acccgaattc tcacgccatc ccagagctgc agattgttgc
     3481 gctcaaggca tccttcgact tccacgctaa cctggccgac gcccttcacg cctgcgccag
     3541 cgctgatacc agcaccggtc attagcgcaa caggccggcc attcaatcga cccactcgcc
     3601 cactcagcca gcgcagcacg cgacatcccg agtgttcgac cagcgaaaca acggtggcag
     3661 cggggccact gcactcagcg tcgtggcgcg tgcctggcct tagcgttcga catggtcaca
     3721 gatcatggtg cctgccgagc cgaggacatc atccctggtc atctcctcag ctcccttaac
     3781 aggctgctga tcatctcacg ggaatcgctc accgacagcg cggacgcccg tagtcgctcg
     3841 tgggcgtggc gatacgccgc aacatcccgg agaccctcga ggtactcgct gtctgtcatc
     3901 cggtccagat agacaatccg cgggttgctg ggatcggaga attccagcac ggtaaacgag
     3961 ccatccacgc cgggatgggc accggcagca aagggcaaca cccgcag
//
LOCUS       DASVXZ010000252        12984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_730199, whole genome shotgun sequence.
ACCESSION   DASVXZ010000252 DASVXZ010000000
VERSION     DASVXZ010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12984
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_730199"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..942
                     /locus_tag="VF788_05065"
     CDS             103..942
                     /locus_tag="VF788_05065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933555.1"
                     /translation="MNSRKLAGASAASVGAATAVAALLLGTLSGSAGEDNTASAFGIA
                     ADGLIPIAPTPYVEAPPDEHKALLEVPGPNAHGIYIALLKVEAEHHRSKATAVKVDIL
                     GLKLKVLEATCENGHGDSSIIKTDDGDKSSPYAGQVLDLSPVVKVEFNRQHRDHDKLT
                     VDAAVISLLPGDRHGRTISDKDLALFQSLASKQLKVPTMAQVNEAHAKSATPGGAPVV
                     SDLLSSLKVLNPSLAAKGDHDALEEIVISSASCRKEEEKRHEQKEEAPPPKPVEAHLP
                     VTH"
     gene            1064..1612
                     /gene="moaC"
                     /locus_tag="VF788_05070"
     CDS             1064..1612
                     /gene="moaC"
                     /locus_tag="VF788_05070"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010308604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEX8933556.1"
                     /translation="MSSERRLTHVDERGEARMVDVSDKQVSAREAIASGVFRTTEEVV
                     RLLRAEQLPKGDALATARIAGVMAAKRTPDLIPLCHPLSLTGVSVDLQTTDSEIHITA
                     TVRTTDRTGVEMEALTAVAVAGLALHDMVKAVDPAAVLDAVRVERKTGGKTGLWTRPT
                     AEPSNVGPTAEPSTMTPVQSGH"
     gene            1626..2648
                     /locus_tag="VF788_05075"
     CDS             1626..2648
                     /locus_tag="VF788_05075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEX8933557.1"
                     /translation="MATPTRRAMVVVASNRAAAGVYADRTGPVIVNWLCERGYHTPDP
                     VVVPDGSPVRDAVAVAVADAVDVVLTTGGTGISPTDRTPEATEPLLDRRLPGLADAIR
                     SAGLPQVPTAVLSRGLAGVAGRTLIVNLPGSTGGVRDGLAVLEGVLDHAVEQLHGADH
                     AGSGTGQPALAEHPLSHSETAQQPAEPPASEPSPSDFEPSGAVLRAVVTEDPLDVEEH
                     ARLVARSAAGAVVSFSGVVRDHDGGKAVRALEYSGHPSAGDVITRVAAQVAAAHPEVL
                     GLAVSHRIGPLMIGDSALACAVAAPHRAAAFAACAALVDEVKLQLPIWKRQEFSDGAE
                     QWVNSP"
     gene            complement(2790..3038)
                     /locus_tag="VF788_05080"
     CDS             complement(2790..3038)
                     /locus_tag="VF788_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX8933558.1"
                     /translation="MVTVRYFAAARAAAGLLSENVEVGHGATVGDALKVIADRHGDAL
                     GKVLPACSFLLDSVAVRDRATPLPPAAQLDVLPPFAGG"
     gene            3325..3729
                     /locus_tag="VF788_05085"
     CDS             3325..3729
                     /locus_tag="VF788_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8933559.1"
                     /translation="MPHYRMAEIAELFGVSDDTVRRWADSGQLTAVRDAGGRKAVDGV
                     ELAAFAKSQAHATPDPSMVDRSARNRFVGLVTEVIADHVMAQVEIQCGPHRVVSLMSS
                     EAVRELGLVPGVLAVAVVKSTQVMVETPGGRA"
     gene            3726..4487
                     /gene="modA"
                     /locus_tag="VF788_05090"
     CDS             3726..4487
                     /gene="modA"
                     /locus_tag="VF788_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX8933560.1"
                     /translation="MKRLVIAALAAGLVLVGCGGAGSGASSPARVPVTVLAAASLQSV
                     FTKLEPQFEAANPSADLRFSFGGSSDLAQQIVNGAPADVFASANEAQMKVIQDAGKVT
                     GTPQPFVTNVLTIVVPPGNPKNIHSFADLAEPDVTEVVCAPQVPCGAATTKIEKATNI
                     KLSPASEEQDVLSVLSKVEARVADAGLVYVTDARTATGKVQEIDFPEASKAVNIYPIA
                     AINNAPHPQLAKAFVAFVLSPDARQQFTQAGFGAA"
     gene            4557..5330
                     /locus_tag="VF788_05095"
     CDS             4557..5330
                     /locus_tag="VF788_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933561.1"
                     /translation="MPRALWLPALMALGLILLPVLGLVVRAPWSRFFTLVTSESALAA
                     LELSLRTGAVSTLLCIVLGGPLAVVLARGSVPGLRLLRSVVLLPLVLPPVVGGLALLY
                     LLGISGFAGYALDVAFGVRVPFTTTAVILAQTFVAMPFLVVSLEGALRTAGERYESIA
                     ATLGATPWTVFRRITVPLVLPGLGSGTVLSFARCLGEFGATIAFAGSLQGVTRTLPLE
                     VYLQREVDADGAIALSLVLVAVAIVVIVVGRPRAVEGLQ"
     gene            5327..6397
                     /locus_tag="VF788_05100"
     CDS             5327..6397
                     /locus_tag="VF788_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010308635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8933562.1"
                     /translation="MNPGLHAEIAVRRGQFALDATVQVAPGEVVAVLGRNGSGKSTLL
                     SAVAGLLRPDTARIVLDGRVLTDTAGGVELPPHRRRIGLLAQQPLLFPHLSVLENVAF
                     GPRSAGIPRPQARETALRRLAEVDAVEFAQRRPRRLSGGQAQRIALARALASDPDLLL
                     LDEPLSAVDVELAPALRSLLQTVLAGRLALIVTHQVIDALMLANRVVVLDAGRVVEQG
                     PTREVLTRPRSAFAARLAGLNLVSGTATADGLRAEDGTELSGLTESAATGTAAVAVFT
                     PGAVAVYVDPPKGSPRNVIQDRIAVLEPNGTLVRVRGAGGLAADITPAAAVELGLHTG
                     AGVWFVVKAAEVAVYLTNGASQ"
     gene            complement(6829..8148)
                     /locus_tag="VF788_05105"
     CDS             complement(6829..8148)
                     /locus_tag="VF788_05105"
                     /inference="COORDINATES: protein motif:HMM:TIGR04267.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEXXH motif-containing putative peptide
                     modification protein"
                     /protein_id="HEX8933563.1"
                     /translation="MTKQLPDGAATRGIPTVHAAIASPRALQRERRALYQFATELLGC
                     DRPQILDTDIIDSPLARHYIGDALAGHTDLLHSTLVGIDAIAAPTIGTQDLRVASQPQ
                     ANILLAPAWKTIEAQLGRQGAGFGPPQLLTEADGERFTTALELLHAGVALARSVSPGL
                     TDDLLPHIALVGIIDPQRAGRLVSASPRAVPGLVLLKSPRSSIEVAEALIHEGAHQKL
                     FDLALTHDLLNANSDRCPPFHPPWTLPGRLWPLEQSLAACHAYVCLDRFSNNLKLGGE
                     LNIIESTHPLDRESLLPVARERSEILGRWLLEQGDHLGIDAHRLVEGLIGRRPRNSSA
                     TGDITSRAATTDYLIDPPLEVRRCGSPDRVLVGRPSRPPQLYWVSNDAATLLELLGHE
                     PISGIIHAFADRWQVPQCDAASRLTGMLSDLSVSGLVRRHSARSDSG"
     gene            complement(8141..9184)
                     /locus_tag="VF788_05110"
     CDS             complement(8141..9184)
                     /locus_tag="VF788_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933564.1"
                     /translation="MTVGVALSALAAALLAVVIAATLLVVAYQRILRRRLADELLRLS
                     GPSIVRALLPQQVMTALLSAIYGDSEANRDVVAGVLGGEGIEPHAGDLTISTHTTVNY
                     ELRAVDYQTFELLSTVTYSFKENVADHRFVIFAICDPLLRDSITLACRLPLFESWFVA
                     DQSLFEQSVDAMLPSVNIGIRYTDLDGNHHEVAPSKIELTEVSYRDWPAFLTFFRAPV
                     GTMPRQNPMQYLGTLRIFECDLGELTDADHAVGSVKNLSLCSTTLGRMDDRFCFWQAP
                     YPCYVDRISFDATALTIDGTSWLFQVVPFTFRAAIATGAWTPAEHLKDLTVRSWLLPG
                     HGVALLWKPATND"
     gene            complement(9305..10123)
                     /locus_tag="VF788_05115"
     CDS             complement(9305..10123)
                     /locus_tag="VF788_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HEX8933565.1"
                     /translation="MSSERDGNGRTSRVAQWELRLDQRRPLPEVIEEKLRELIDNGVL
                     PEGERLPNEPELARRMAVARSSVRTALQRLEVLRVVEVRRGRGWFVRRKPADDLPGEF
                     MEWISERRFRLSEGLEVRMALEGMAASLAAARATEGEIDDIAKLSKDHLAAFADVDEL
                     LRTDEAFHDAIFRASRNDLLLATYRMLIPELTEVRRRRFTVRGVPARSGTEHDSVVNF
                     LKRGDSAGARAAMTTHLLGLYHEIQATDDQEGMGQPAHLTTFVGIEDEPEWHPR"
     gene            complement(10706..10930)
                     /locus_tag="VF788_05120"
     CDS             complement(10706..10930)
                     /locus_tag="VF788_05120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933566.1"
                     /translation="MLPRVGRDGDRLNRPYTAGWAVVFITAQRLREPRRLIQTVSTVL
                     SATWRQAVHADRYGWLGRTAPRFLPGPIDQ"
     gene            11220..11606
                     /locus_tag="VF788_05125"
     CDS             11220..11606
                     /locus_tag="VF788_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019815767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEX8933567.1"
                     /translation="MPTGKVKWYDAGKGFGFVTQDGGADVYVRSTALPTGVTDLKSGQ
                     RVEFGVADGRRGPQALSVRLLESPPSVAEARRRPAEELHGMIDDMIRLLESRVQPDLR
                     RGRYPDRRAIKRIGEVVRAVAQELDP"
     gene            complement(11622..12869)
                     /locus_tag="VF788_05130"
                     /pseudo
     CDS             complement(11622..12869)
                     /locus_tag="VF788_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156309.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         2275 a         4111 c         4368 g         2230 t
ORIGIN      
        1 ctgcatccgg gtgccgaagg atgcgctcaa ccagttgact caagttcccc tggggacgct
       61 cgtgcttatc gacgagaact gaacaaaatg aaaggacagc atgtgaacag taggaagctc
      121 gccggcgcca gtgctgccag cgtcggtgcg gccaccgccg tcgcggccct gctgctgggg
      181 accctgtccg gatccgctgg cgaagacaac actgcctcgg cgttcggaat cgccgcggat
      241 ggtttgatac cgatcgcacc cactccttac gtcgaggcac cgcccgatga gcacaaggca
      301 ctcctggagg tgcccgggcc gaacgcgcac ggcatctaca ttgcgctgct caaggtcgag
      361 gctgagcacc accggtccaa ggcgacagcg gtcaaggtgg acatcctggg gctgaagctc
      421 aaggtcctcg aggcgacttg cgagaacggc cacggtgatt cctcaatcat caagaccgat
      481 gacggtgaca agtcgtcgcc ctacgcaggt caggtgctgg atctctcgcc agtggtcaag
      541 gtcgagttca accggcagca tcgcgaccac gacaagctca cggtcgatgc cgcagtgatc
      601 tcgctgcttc ctggcgaccg gcacggtcgg acgatctcgg ataaggacct cgctcttttc
      661 cagagccttg cgtccaagca gctgaaagtt ccgaccatgg ctcaggtcaa tgaagcacat
      721 gccaagtcgg caacgcccgg gggagctccc gtcgtgtctg acttgttgag ttcgctcaag
      781 gtgctcaacc caagcctggc cgccaagggc gatcatgatg ccctggagga aatcgtgatc
      841 tcgtcggcaa gctgccgtaa agaggaagag aagcgccacg agcagaagga agaagccccg
      901 ccgccaaagc cggtcgaggc gcaccttccg gtgacgcact gagctgacta gcacagtatg
      961 aggggctggc acgcaatgcg tgccagcccc tcatactgtc tgcgctaccc cggcgccccg
     1021 aggtgatcgg ccaccggtgg cggtacggcc gtaggatcgg ctggtgagtt ctgagcgacg
     1081 gctgacccat gtggacgaac gtggcgaggc tcggatggtc gacgtttcgg ataaacaggt
     1141 gtccgcacgg gaagcgatcg cctcaggtgt ctttcgcacc accgaggaag tggtccgctt
     1201 actgcgtgcc gaacaactgc ccaagggaga cgcgctggcc acggcgcgta tcgcgggagt
     1261 catggcggcc aagcgaacac ctgatctgat cccgctgtgc caccccctgt ccctgaccgg
     1321 ggtcagcgta gatctgcaga ccacagattc cgagattcac atcaccgcca cggttcggac
     1381 caccgaccgc accggggtgg agatggaggc gctcaccgct gtcgctgtcg ctggcttggc
     1441 gctgcacgac atggtcaagg cagtcgatcc cgccgcggtg ctcgacgcgg tccgggtgga
     1501 gcgcaagaca ggtggcaaaa ccgggttgtg gacccgaccg acggccgagc cgtcgaatgt
     1561 gggaccgacg gccgagccgt cgacaatgac accggtgcag tcgggacact agttgaggag
     1621 gaccgatggc tacaccgacc cgtcgcgcaa tggtcgtagt ggcgtccaat cgtgcggctg
     1681 ctggcgtata cgccgatcgc accggtccgg tcatcgtcaa ctggctttgc gagcgcgggt
     1741 atcacacccc cgaccccgtc gtggtacccg acggctcacc agtgcgtgac gcggtagcgg
     1801 tagccgtggc agatgcggtc gatgtcgtgc tgaccaccgg tggcaccggg atcagcccca
     1861 ccgaccgcac tccggaggcc accgagccgc tgctggaccg ccgactaccc ggattggccg
     1921 acgcgatccg ctcggctgga ctgccccagg tgcccaccgc ggtgctctcc cgggggctgg
     1981 ccggcgtggc cggtcggacg ctgatcgtca atctaccggg ttccaccggt ggagtccggg
     2041 acggccttgc ggtgctcgag ggggtccttg accatgccgt cgaacagctg cacggtgctg
     2101 atcacgctgg cagcggaacc ggccagccgg cgctggccga gcacccactc agccactccg
     2161 agactgcgca gcagcccgcg gagccgcctg cttcggagcc gtccccctcg gacttcgagc
     2221 cctccggcgc agttcttcgc gcggtggtca cggaggaccc gctcgatgtg gaggagcacg
     2281 ccaggttggt ggcacgctcg gccgctggcg cggtggtgag cttctccgga gtggtccgcg
     2341 accacgacgg tggtaaggca gtacgcgcgc tggaatactc gggccacccc agcgcgggcg
     2401 acgtgatcac ccgagtggcg gcgcaagtgg ctgcggcaca ccccgaggtg ctgggtttgg
     2461 cggtcagcca ccggatcggg ccactgatga tcggcgattc cgcgctggcc tgcgcggtgg
     2521 ctgcgcccca ccgggcggcg gccttcgcgg cgtgcgcggc gctggtcgac gaggtgaagc
     2581 tacagctacc gatctggaag cggcaggagt tcagcgacgg cgccgagcag tgggtcaact
     2641 caccctgaag ctcgcgggat ctcattcgta cggcgtgtcg ggctcaggtg ctcaccgtgt
     2701 cgttctagag tgcttgacca caaacaaagg gatgctccgc tggcctgccc tggcgttagc
     2761 gcgagatcga agacatcaga atcggaaatt cagccgcccg cgaagggcgg cagcacatcc
     2821 aactgggcag cgggcggtaa cggcgtagcg cgatcccgga ccgcgacgga gtcgagaagg
     2881 aaactgcaag cgggaagaac cttgcccaag gcgtccccgt gccggtcagc gatcaccttc
     2941 agcgcgtcgc cgacggtggc gccgtggccg acttctacgt tctcgctgag caggccggca
     3001 gcggctcgcg ccgccgcgaa gtaccgcacg gtcaccacgg tcaagcctcc gatcgcactc
     3061 ttcagggggt caacaaaccc tacctccgtc tggctctatg acgacgtggt agctagcacc
     3121 agcggtctcg gcaagcctgt ttatcggcgg atcaccctga ttgtgtttgg atatgcggaa
     3181 ttatggccaa tgatctccgc gcatgcagaa caacgcctct cttgactcgc gaggccggct
     3241 gggatccgcg gacttcgaga ccgctacgag tgcggatcag ccggtgagtt tgtattcctc
     3301 aggtgcggag gtatcctcct gggcgtgccg cactaccgga tggccgagat tgctgagctg
     3361 tttggcgtaa gcgatgacac cgttcggcgc tgggcggact ccgggcagct gacggcggtc
     3421 cgggacgccg ggggccgcaa agctgtggac ggggtggaac tggccgcgtt cgccaaatca
     3481 caggcgcacg ccacgcctga cccgtccatg gtggatcgat cggcacgcaa ccggttcgtt
     3541 gggctagtca ccgaagtgat cgccgatcat gtgatggcac aggtggaaat ccagtgtgga
     3601 ccacaccggg tggtctcact gatgagtagc gaggcagtgc gggaactggg gctcgtgccg
     3661 ggggtacttg cggtggcagt cgtgaagtcg acccaggtca tggtcgagac cccaggagga
     3721 cgtgcatgaa gcggttggtg atagcggctc tcgccgccgg gctggtgctc gttggctgcg
     3781 gcggtgccgg gagcggggcg tccagcccgg cgagggtgcc ggtcaccgtg ctggcggcgg
     3841 cttccctcca gagcgtgttc accaagttgg agcctcagtt cgaggcggcc aatcccagcg
     3901 ctgatctgcg gttcagtttc ggcggctcct cagacctggc ccagcagatc gtcaatggcg
     3961 cacccgccga tgtcttcgcc tcggccaacg aggcacagat gaaggttatc caggatgccg
     4021 ggaaggtgac cggcactccg cagccgttcg tgaccaacgt gctcaccatc gtggtgccgc
     4081 cgggtaatcc gaagaacatt cactcattcg ccgatctggc cgagccagac gtcacggagg
     4141 tcgtctgcgc gccgcaggta ccgtgcggag ctgccaccac gaagatcgag aaggcgacca
     4201 atatcaaact cagcccggcc agcgaggagc aggacgtgct gtcggtgctg tccaaggtag
     4261 aggccagagt tgccgatgcc gggctggtct atgtcaccga tgcccgtacc gccaccggca
     4321 aagtccagga gatcgatttt ccggaggcca gcaaggcggt caacatctac cccatcgccg
     4381 cgatcaacaa cgccccgcat ccccaactcg ccaaggcgtt tgtggcattc gttctcagtc
     4441 ctgacgcacg gcagcagttc acccaggccg gcttcggagc tgcctgaccg aggccggggc
     4501 ggatccggaa cacctgcgtg actcaaacca gagatccgca catcgtccat accggactgc
     4561 cccgtgcgct gtggctgccg gcattgatgg ccctaggact gatcctgctc ccagtgctcg
     4621 ggctggttgt gcgggccccc tggtcgcgct tcttcacgct ggtcaccagt gaatcggcgc
     4681 tcgccgcgct cgaactctcg ctgcgtactg gcgcggtgtc cactctgctc tgcatcgtgc
     4741 tcggcgggcc gctggcggtg gtgctggcgc gcggatcggt ccctggcctt cgactgctgc
     4801 gctcggtggt cctgctcccg ctggtactgc cgccggttgt cgggggcctg gcgttgctgt
     4861 acctgctggg gatcagcggg ttcgccgggt atgcccttga cgtggcgttc ggcgtgcgcg
     4921 tcccgttcac caccacggcg gtgatcctgg cgcagacgtt cgtggccatg ccatttctcg
     4981 tggtgagcct ggagggggca ctgcgcaccg ctggcgaacg gtacgagtcg atcgcagcga
     5041 ccttgggggc gacaccctgg acagtgttcc gccggatcac cgtgccgctg gtactgcccg
     5101 gtctgggctc gggcacggtc ctcagcttcg cccgctgcct aggcgaattc ggggccacca
     5161 tcgcattcgc cggcagcctg cagggcgtga ccaggacgct gcccctggag gtttacctgc
     5221 agcgggaagt cgacgctgac ggggcgatcg ccctgtcgct ggtgctcgtg gcggtagcca
     5281 tcgtggtgat cgtcgttggc cggccgcgcg cggtggaagg gttgcagtga atcccggatt
     5341 gcacgccgag atcgccgtgc gccggggcca gttcgcgctg gacgcgacgg tgcaggtggc
     5401 acccggcgag gtggtcgcgg tgctagggcg caacggctct ggcaaatcca ccctgctctc
     5461 cgcagtcgcc ggactgctgc gtccggacac cgcgcggatc gtgctggatg gccgggtgct
     5521 cacagatacc gccggcgggg tggaactgcc gccacaccgc cggcggatcg gactgctggc
     5581 ccagcagccg ctgctatttc cacacctgtc ggtgctggag aacgtcgcat tcggtccacg
     5641 ctcggccggt atcccccggc cacaggcccg ggagacggca ctgcgccgtc tcgccgaggt
     5701 ggacgcagtc gagttcgccc agcggcgccc ccggcggctg tccggtgggc aggcgcagcg
     5761 catcgcgttg gcccgggcgt tggcctccga cccggacctg ctgttgctgg acgaaccgct
     5821 gtccgcggtg gatgtggagc tcgcgcccgc gttgcgatcg ctgctgcaaa ccgtgctggc
     5881 cggtcggctt gccctgattg tcacccatca ggtcatcgac gcgctgatgc tggcgaaccg
     5941 ggtagtggtg ctcgacgctg gccgggttgt ggagcagggc ccgactcggg aggtgctcac
     6001 ccggccgcgc agcgcgttcg ctgcccggct ggccggattg aacctggtct ccggcaccgc
     6061 gaccgcggat ggtctgcgag ccgaggacgg caccgaacta tccggcttga ccgaatccgc
     6121 agctaccggt actgcggcgg tcgcggtgtt cacccctggt gcggtcgcgg tgtacgtgga
     6181 tccgcccaaa ggcagccccc gcaacgtgat tcaagaccgg atcgcagttt tggagcccaa
     6241 cggcacgctg gtccgggtac gcggtgccgg cggactcgct gcggacatca ctccagcggc
     6301 tgccgtggag ctagggctgc acactggcgc cggagtatgg ttcgtcgtga aggctgccga
     6361 ggtcgccgtc tatcttacga acggggccag tcagtgatga cgaatgatcc gatccccgaa
     6421 tcccgcctag cgctctgacg ggatatcagt ggtgggtggc gccgatctag tcggcgtgtt
     6481 cggcgaccgg ttgcgggtct gcgtcagcgt cccgtagcgg tgccacgaag agcgtggttc
     6541 cgccgggatc gcgctggaac cattcgacac gcatggagtg cttcgttggt gcgctgtccg
     6601 ccacagtgcc tcgcacgtcc atcagaacat gtcccttcgt ccccaggatg aagatcagat
     6661 ggtagcaacg ctgtgtaacg gctgtgtcac gggctactac cgctgtgtcc tacctagtac
     6721 gtatctttga gccctggtac ctagaagcgc acgatcagcc aagggcacgg gaggagatgc
     6781 tagccgcggg tggtgcgggc accgtggtcg cacccggcgg tgaggtgatc agccggaatc
     6841 actgcgtgca ctatgtctcc ttaccaggcc tgataccgag agatcggaga gcattccggt
     6901 cagccgcgaa gccgcgtcgc actgaggtac ctgccagcga tcggcgaagg cgtggatgat
     6961 cccgctgatg ggctcgtgcc cgaggagctc aagcagcgtc gccgcgtcat tgctgaccca
     7021 gtacagctgg ggaggacgcg atgggcggcc aacgagcacg cggtccggag agccacagcg
     7081 acgaacctcc agcgggggat cgatgagata gtccgtggta gccgccctgc tcgtgatgtc
     7141 tccggtggcg gaggaattgc gtggccgccg accgatgagg ccctccacta gcctgtgggc
     7201 gtcgatgccg aggtgatcac cttgctccag cagccatcga ccgaggattt cgcttcgttc
     7261 cctcgccacc ggcagcaacg actcgcggtc aagcggatgg gtgctctcga taatgttcaa
     7321 ctcgccaccg agcttcaggt tattgctgaa ccgatcgaga cagacatatg cgtggcaggc
     7381 ggcgagggac tgttcgagtg gccacaaacg gcccgggagc gtccacggtg ggtgaaacgg
     7441 tgggcaccgg tcagagttgg cattgagcag gtcatgggtg agagcgagat cgaatagttt
     7501 ctggtgggcg ccttcatgta tcagcgcctc ggccacttca atgctcgatc gtggactttt
     7561 cagcagcacc agcccgggaa cggcgcgagg ggaggccgag accagccgtc cggcccgttg
     7621 cgggtcgatg atcccaacta gtgcgatatg cggaagcaga tcgtcggtca acccgggact
     7681 gaccgaccga gctagcgcga cgccggcgtg taggagctcg agcgccgtag tgaagcgctc
     7741 gccatcggcc tcggtgagca gttgaggtgg cccgaacccc gctccctggc ggcccagctg
     7801 tgcttcgatg gttttccagg caggtgcgag caggatattc gcctgaggtt gcgatgctac
     7861 ccggaggtct tgtgtgccga tggtcggggc agcgatggca tcgataccga ctaacgtgga
     7921 atgcagcaaa tcggtatgac cggccagcgc gtcaccgatg tagtgtcggg cgaggggact
     7981 gtcgattata tcggtgtcca gtatctgtgg tctgtcgcat cccagcagct ctgtcgcgaa
     8041 ctgatataaa gctcgacgct cccgctgcag tgcgcggggt gaagcaatcg ccgcgtgtac
     8101 ggttgggata ccacgtgttg cggctccgtc cgggagttgt ttagtcattc gtagctggct
     8161 tccacagtag tgcgacgccg tgtccgggta gaagccagga tcgtactgtg agatctttca
     8221 ggtgctctgc cggggtccat gcgcctgtcg cgatagccgc tcggaaggtg aacggcacca
     8281 cctggaagag ccaggaggta ccgtcgatcg ttaatgcggt ggcgtcgaag ctgatgcggt
     8341 cgacgtagca ggggtatggg gcttgccaga agcagaacct gtcgtccatc cgccctaagg
     8401 tcgttgagca gagagataaa ttcttcaccg agccgaccgc gtggtcggca tcggtgagtt
     8461 caccgaggtc gcactcgaag attcgcaggg ttcccagata ttgcatggga ttctgccggg
     8521 gcatcgtgcc gaccggtgcc cggaagaagg tcaagaaggc gggccagtcg cggtagctca
     8581 cctccgtcaa ctcgatcttg cttggcgcca cctcatgatg gttgccatcg aggtcggtgt
     8641 aacggatccc aatgttcacc gaggggagca tcgcgtccac cgactgttcg aacagtgatt
     8701 ggtcggccac gaaccaagat tcaaaaaggg gcagtctgca ggcgagggta atagagtcac
     8761 ggagtagcgg gtcacatatg gcgaagatga cgaacctgtg gtcggccaca ttctccttga
     8821 agctgtaggt taccgtggac aggagttcga aggtttgata atcaactgca cgtagctcgt
     8881 aattcacggt ggtatgcgtg ctgatggtga gatcaccggc gtgtggttcg attccttcac
     8941 cacccagcac gccggcgacg acatcacggt tagcctcgct gtcgccgtag atcgcagaca
     9001 gcaaagctgt catcacctgc tgcggcaata acgcgcgaac aattgaagga cccgaaaggc
     9061 ggaggagttc gtcagccaaa cggcggcgca ggatacgttg atatgccacg acgagaagcg
     9121 ttgcggcgat gacaaccgcg agaagcgcag ccgccaacgc ggaaagtgcc acgcccaccg
     9181 tcacccaaga ctccccgtct gcgccgccgg ttccaacatc ctgacggcac agagtcgggc
     9241 gcgccagccc gcgccggtcg ggattggtcg gacgtgaacc gcgcagactt agcgggtcgc
     9301 ggagtcagcg gggatgccac tccggttcgt cctcgatgcc gacgaaggtg gtcaaatgtg
     9361 ctggttgccc cattccttcc tggtcatcgg tcgcctggat ttcgtggtag agacctagca
     9421 ggtgagtcgt catcgcggcg cgtgccccgg cggagtcacc acgcttgagg aagttgacga
     9481 cactatcgtg ctcggtgccg gagcgtgctg gcacgccacg gacagtgaaa cgtcgccggc
     9541 ggacctccgt gagctctgga atgagcatgc gatacgtcgc cagcagcaaa tcgttgcgac
     9601 tcgcacggaa gatggcgtcg tgaaacgcct cgtcggtccg cagtaattca tcgacgtcag
     9661 caaacgctgc gaggtgatcc ttgctgagtt tcgcgatatc gtcgatctca ccttcggtag
     9721 cgcgggccgc ggcaaggctt gcggccatcc cctcgagcgc catccgtact tcgagcccct
     9781 cactgagccg gaagcgccgc tcagaaatcc actccatgaa ctcacccggt aggtcgtcgg
     9841 ccggtttccg ccggacgaac cacccccgcc cccgccgaac ctcgaccacg cgaagaactt
     9901 caaggcgctg taacgcagtt cgcaccgagc tacgtgccac agccatccgc cgggcaagct
     9961 caggctcgtt gggcaggcgc tcgccttcag gtaacacacc gttgtcgatg agttccctca
    10021 gcttctcctc tatcacctcc ggtagtggtc ggcgttggtc caatctcagt tcccactgag
    10081 cgacgcgtga ggtccgcccg ttgccgtcac gctcactgct catctcgtcg ctactcctgt
    10141 cttgatggct cggcgccggt gttgttggcc gccctgttct tggtgatcgg cagagtgcac
    10201 atgcgggccg caacggtgca gtcagcagcg gaccggacgt caggttgctg cggcgctgcg
    10261 ctgacggtag tccgaccaga ttctacaccc ataagtcgtc tgaccgcaca gatatgtaga
    10321 cagacatccg atgtctgtct aatctgacct catcaggccg aagtgagcta gggcttccag
    10381 ctccggaacg cgcgcactga ggaaggggaa gcgtcatgtt ggatatttat cggagcgcga
    10441 cacgtctccc cagcgcccgg ccggtgcgcc gcggccagga gatgcactgt cgtggcggag
    10501 cacaccgcag agcaccatga cgctggcgct gctcagtgcg gtgttcatgc tgagcctcgg
    10561 ggcgctgctc ggcacggctt ggaccactca ggcttcgcag ccgaagcttc gtcggcaggc
    10621 tgaagagcgt cgaaggctga acagcgaatg gctagccgtc cgaactgccc gccggcagca
    10681 gcgcgaatgt ccgcgttgcg gtaatttact gatcaatcgg acccggcagg aatcgaggcg
    10741 ctgttcgtcc tagccagccg taccggtcgg catggaccgc ttgtcgccat gtggcgctga
    10801 ggacggtgct gacggtctgg atgaggcggc gtggctcgcg gaggcgctgg gcggtgatga
    10861 atacgaccgc ccagcccgcg gtgtacgggc ggttcaaccg gtcgccgtcc cgcccgaccc
    10921 gcggcagcat gccttgccac gccccgtcgt actcgtgtca tccacaggtc cttactcgaa
    10981 gcgcgacaag cacccatatc gctcgctagc gtggacttgt gacagcgaca agcatccatg
    11041 tcgctcagta gcgtggggca agagcaacga taagcatcca ggtggcggga aacaggggca
    11101 cggggtgtgg gcgaaggtcg tatggtgggg ggcacgcgtc ccgggtgcgt tcggggcgcg
    11161 ttcgtcttgc tggtcgtgca ccccggcagg cggtactcca cgagggaacg gtgaggtcag
    11221 tgccgaccgg caaggtcaag tggtacgacg cgggcaaagg cttcggattc gtcacccagg
    11281 acgggggtgc cgacgtctac gtgcggtcca ccgcgctccc taccggggtg accgatctca
    11341 agtccggcca gcgagtcgag ttcggagtgg ccgatgggcg acgcggtccg caggccctct
    11401 cggtgcgttt gctggagtcg ccaccgtcgg tggcggaggc ccggcgccgg cctgccgagg
    11461 agctgcacgg catgatcgac gacatgatca ggttgctgga gtcacgagtt cagcctgacc
    11521 tgcgccgcgg ccgctacccc gatcgccgcg ccatcaagcg aatcggggag gtcgtgcgcg
    11581 ccgtcgccca ggaactcgac ccctgaccgc gggccacgaa tttaccgggt ggcgaacccg
    11641 ggaatcagag atgctccgcg gcggattagt gcggtttggg cgaggcccag ggcgagcagc
    11701 agcgagaccg cagcgaaacc gacccagtag atcggcggca gcagcacacc cagcgcgcca
    11761 ccggtcaccc aggccatctg gagcacggtc tcggaccggc cgaacgccga ggcccgggac
    11821 gcctccggca caccacgctg gatcaccgca tccaggcaga ccttggccac cgcgctggcc
    11881 gtcgccgcga ccagtgcggt gacggcggcg atggcgatgc cttgcaccag cgcggcgagc
    11941 accgccatgg tgagcccggc ggccacgcat ccgaggatgg cctgatcggg cctaccgaag
    12001 tgcatccggg cgcccactgc gttgcccaga aagctgcctg cccccgcggc cgcgccgacg
    12061 atgccgagta gcgccagctg ccttccgggc gaaccctctg tctgggcctt caccgcaaac
    12121 gcgacgaaca gggtgaggaa cccggtgagc acccgaacgg tcccgttacc ccacagcgcg
    12181 acgacgacct ggcgacccat cggctgccgg cgccgcgagg aaccaagcgc ttccgtggac
    12241 tcggcccgca gcgaggccgg tacctccccc tcggtgacct ccacccatga cgggatgcgc
    12301 aaacacaaaa acacccccgc cacgcagatc gcggcagtga acagtaaggc tcccggcgat
    12361 ccggtcagcg ccgagatacc ggcggccacc gcacccgata cgcccgcagc gaccagcccg
    12421 aatgcggtga gccgagaatt ggtcttcacc aaggtgatcc ctggggggag tacccgaggg
    12481 atgacggcgg cctggaggac gccgtaagac ttggccagca ccatgaaccc cagcgccgcc
    12541 gggtacagca gccaatcgtg gacatgagcc gccatcacga tcagcaagaa tgcgcgtccg
    12601 gcgaacgaca gtgccatcgc cacccgcctg ccgtgctgca gccggtccag caacgggccg
    12661 atcaccgggg tgaccactgc aaacggtgcc accgtgatca ggaggtagag cgccacattg
    12721 gcccggctct gcgcggtggc tgccgcgaag aacagcgtgt tggccagggc catggcgatg
    12781 gccgcgctcg ccgcgtagtc cgccatcgtc gcgtaggtca gcgaggacag cccggaccgt
    12841 cctgcgccgt cggccgtggc tgcctggcgg agcaggcagc tggtcggagg tggcgtgcgg
    12901 cgcttccacc aggccaccac ggccgatgga gcgggacggt ccgggctgtc ctcgttgacc
    12961 tacgcgacga tggcggacta cgcg
//
LOCUS       DASVXZ010000253         8567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1551400, whole genome shotgun sequence.
ACCESSION   DASVXZ010000253 DASVXZ010000000
VERSION     DASVXZ010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8567
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1551400"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1137)
                     /gene="eccB"
                     /locus_tag="VF788_05135"
     CDS             complement(<1..1137)
                     /gene="eccB"
                     /locus_tag="VF788_05135"
                     /inference="COORDINATES: protein motif:HMM:NF016964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EccB"
                     /protein_id="HEX8933568.1"
                     /translation="MSIDPPTTSQVQAYRFVIRRMESALVRKDAVMLHEPMRRHSRAT
                     AVGVVLSMVGLVAFFVVGKFRPVSELTVNEIIIGRPSQEVFVVQDNPRRLVPVRNLTS
                     ARLLLAAISPGRPAPEAKTVEDSTLTGVSRTQSTGIDGVPPLPAPENMIKSVWSVCDT
                     AKVRSDLPNGESHPQLSTTVLVQERAPAGRMLGDETALLAAEQDTGITYLVWRGQRER
                     VDLVHDAAVRTYYRLGNVIPRKASAGLLNAIPEGHPLMLPVIPAARPVAELPGVQVGD
                     VVRVKGVQDSFFLVLPQGVQAVQPAVADVLRYRRGASAEFTTVAPGAISRVPEVPVAS
                     QLDFEGFPTQVPPILKIVEASVTCITWQGSDQSPAVSVYPDGRLP"
     gene            1235..2545
                     /gene="eccE"
                     /locus_tag="VF788_05140"
     CDS             1235..2545
                     /gene="eccE"
                     /locus_tag="VF788_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EccE"
                     /protein_id="HEX8933569.1"
                     /translation="MTAAQAPPQQESTRPRESISAPRATVTARLRSSGSRLGPLPVIN
                     LVVLEIGLAVGLALVTFDTGLWGAALILSLVALPLALGRWHGQWLVRWVQLGTRYLVR
                     SHGRSVTGPDPSAPAGTSTSHPDDPRVTLLRLLLPDLTIAHCADRLGEPLGLTWHHGT
                     CTAVLEVDAGASMIAPVGSAAGLPLGALASCLEDRGVTLDAIQVIWHCYPGSAALPSS
                     SPALRSYLEVLGPLPAAARRTTWIAVRLDPHRCPAAVAERGGGATGCHRALIGALSRV
                     RATLESQGVSTRPLDADQLLRAGILAAELSAVAGTGQPVALSERWSAVTAGGVGHASY
                     AITGWGLTGAVHNLNALTGVRALSTTVALSISPGSPDEATGAGVDEVGLRGLIRLSAR
                     NPAELESADDHLRAVSQRLGVALRPLDGLQAAGLAATLPLGAPG"
     gene            2558..3280
                     /locus_tag="VF788_05145"
     CDS             2558..3280
                     /locus_tag="VF788_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005461400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933570.1"
                     /translation="MSRTLGNGSAAGAVAPEFLVTPGLLDAVSPSGDRGGMVLGCGPH
                     NEPLSVSVLRPQPTRLVVVGGLYLARQVALRAMATGAWVIIVTGRPDAWQLIAQAAGT
                     GPDGRPAPLVQIRQLAPLELPRASEDAPLLVVHDGGAVPQELFPPRSPWHTTLYVLPY
                     LHPQAEGTAVNADLVLLQQLPAAQAQLAARIWQLPAAMAAQLSALTDDGVAALGPDLW
                     LPLRLVTTPAEREILGPVRRGD"
     gene            complement(3310..4119)
                     /gene="truA"
                     /locus_tag="VF788_05150"
     CDS             complement(3310..4119)
                     /gene="truA"
                     /locus_tag="VF788_05150"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEX8933571.1"
                     /translation="MRYCLNISYDGGGFSGWARQPGRRTVQGVLEDALAVIARIPAFL
                     TVAGRTDAGVHATGQVAHLDVPPEALSPELLVHRLARLLPPDIRVPAMRQVPRTFDAR
                     FSALRRHYRYRVCDAPWGVDPLRRYDTVSHPRRLDDAAMNMASGLLLGEHDFAAFCRR
                     REGASTVRALERLEWTWGEPHLLIAHVAADAFCHSMVRSLVGALLAVGEGRRPPDWPA
                     ALLRHTTRTSEVTVAPAHGLTLVGVDYPHDDQLAARAAQTRAVRRQVHPNP"
     gene            complement(4173..4715)
                     /gene="rplQ"
                     /locus_tag="VF788_05155"
     CDS             complement(4173..4715)
                     /gene="rplQ"
                     /locus_tag="VF788_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEX8933572.1"
                     /translation="MPTPTKGPRLGGSPAHERLMLANLATSLFDHGRITTTEAKAKRL
                     RPFAERLITKARRGDLHNRREIMRVIRDKDVVHKLIAEIGPQFEGRPGGYTRIVKTLP
                     RKGDNAPMAIIALVTERTAAEVEEVKRQAFKSRSQVKQPTSSEERTAADTAPDETGAA
                     DAAAEQKTPPPAQQEVGGES"
     gene            complement(4783..5856)
                     /locus_tag="VF788_05160"
     CDS             complement(4783..5856)
                     /locus_tag="VF788_05160"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005166811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEX8933573.1"
                     /translation="MLITQRPNLSEEPVDFTRSRFVIEPLEPGFGYTLGNSLRRTLLS
                     SIPGAAVTSIRIDGVLHEFTTVPGVKEDVTDIILNLKELVVGSEEDEPVTMYLRKQGP
                     GDVTAGDIVPPSGVTVYNPDLHIATLNGKGKLEIELVVERGRGYVPAVQNKASGAEIG
                     RIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLILDVETKPSLTPRDALASAGRTLVEL
                     FGLARELNIDAEGIEIGPSPAEADTIAAFAMPIEDLDLTVRSYNCLKREGIHTVGELV
                     SRSEADLLDIRNFGAKSIDEVKLKLAGLGLQLKDSPPGFDPSAVAAEYSIDGWGDASD
                     NGIDNGPDYGPDDGHDYAETEQL"
     gene            complement(5985..6590)
                     /gene="rpsD"
                     /locus_tag="VF788_05165"
     CDS             complement(5985..6590)
                     /gene="rpsD"
                     /locus_tag="VF788_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009072341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEX8933574.1"
                     /translation="MARYTGPVTRKSRRLKTDLVGGDQAFERRPYPPGQHGRARIKES
                     EYLLQMQEKQKARFTYGVMEKQFHRYYEEANRRPGKTGDTLLQILESRLDNVIYRAGL
                     ARTRRQARQLVTHGHFVVNGVKVDVPSFRVSKFDIIDVKPKSVPTLPFLVAKETVGDR
                     PVPGWLQVVPATLRVLVHRLPERAQIDVPLQEQLIVELYSR"
     gene            complement(6617..7024)
                     /gene="rpsK"
                     /locus_tag="VF788_05170"
     CDS             complement(6617..7024)
                     /gene="rpsK"
                     /locus_tag="VF788_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008747488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEX8933575.1"
                     /translation="MPPRARTGAGVKKVRRKEKKNVAHGHAHIKSTFNNTIVSITDPT
                     GAVIAWASAGHVGFKGSRKSTPFAAQMAAENAARKAAEHGMKKVDVFVKGPGSGRETA
                     IRSLQAAGLEVGTIQDVTPQPHNGCRPPKRRRV"
     gene            complement(7079..7459)
                     /gene="rpsM"
                     /locus_tag="VF788_05175"
     CDS             complement(7079..7459)
                     /gene="rpsM"
                     /locus_tag="VF788_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018490826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEX8933576.1"
                     /translation="MARLSGVDLPRDKRMEIALTYIYGIGRTRSHEILSATGVSPDLR
                     SKDLSDEDLIRLRDYIEEHLKVEGDLRREVQADIRRKIEIGCYEGLRWRRGLPVRGQR
                     TKTNARTRKGPKKTVAGKKKAGKK"
     gene            complement(7648..7761)
                     /gene="rpmJ"
                     /locus_tag="VF788_05180"
     CDS             complement(7648..7761)
                     /gene="rpmJ"
                     /locus_tag="VF788_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005487032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEX8933577.1"
                     /translation="MKVKPSVKKICDKCKVIRRHGVVMVICENLRHKQRQG"
     gene            complement(7819..8040)
                     /gene="infA"
                     /locus_tag="VF788_05185"
     CDS             complement(7819..8040)
                     /gene="infA"
                     /locus_tag="VF788_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEX8933578.1"
                     /translation="MGKKDGAIEVEGKVVEPLPNAMFRVELENGHRVLAHISGKMRQH
                     YIRILPEDRVVVELSPYDLSRGRIVYRYK"
     gene            complement(8272..>8567)
                     /locus_tag="VF788_05190"
     CDS             complement(8272..>8567)
                     /locus_tag="VF788_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933579.1"
                     /translation="RTYGELETLTADLPQVRLPVNREVRQPHWQHRHGRGGRAAVAVW
                     ASASVINLLIWAVVSLAAMSWIYPWWVWVAGPWGAMLLAGWIGERGRALRPAR"
BASE COUNT         1294 a         2885 c         2860 g         1528 t
ORIGIN      
        1 cggcagccgc ccgtctggat agacactcac cgctggggac tggtccgacc cctgccaggt
       61 gatacaggtc accgaagcct cgacgatctt gagaatcggc gggacctgag tggggaagcc
      121 ctcgaagtcc agctggctgg cgaccggcac ctccggaacc cgcgaaatgg cccccggggc
      181 gacggtggtg aactcggcac tggcgccacg gcggtagcgg agcacgtcgg caaccgcggg
      241 ctgcactgcc tgcacaccct gtggcagcac gaggaagaag gagtcctgga cgcccttcac
      301 ccgcacgaca tcgccaacct gcacaccggg aagctccgcc acgggacggg cggccgggat
      361 aaccggcagc atgagcgggt gcccctccgg gatcgcattg agcaggccgg cactggcctt
      421 gcgcgggatc acgttgccta accggtagta ggtgcggacg gcggcgtcgt gcaccaggtc
      481 cacccgctcg cgctggccac gccacaccag gtaggtgatc ccggtgtcct gctcggcggc
      541 gagcagtgcc gtctcatcac ccagcatgcg accggccggc gcccgttcct ggaccagaac
      601 tgtggttgac agctgggggt gggactcccc gttcggaaga tccgaccgga ccttcgctgt
      661 gtcacaaacc gaccacacgc ttttgatcat attttccggt gcgggcagcg gcggaacacc
      721 gtcaatcccg gtggattggg tgcgggatac gccggtcagg gtggaatctt cgacggtctt
      781 ggcctcaggc gccggccgac cgggtgagat cgcggccagc agcaaccgcg ccgaggtcag
      841 gttccgcacc gggaccagcc ggcgcgggtt gtcctgcacc acaaatacct cctgggacgg
      901 ccggccgatg atgatctcat tcacggtgag ttcgctgact ggccggaact tgcccacgac
      961 gaagaaggcc accaatccga ccatgctcag gaccacgccg acggccgttg cccgcgagtg
     1021 gcggcgcatc ggctcatgca gcatcacagc gtcctttcgg accagagccg attccatcct
     1081 gcgaattacg aagcggtagg cctgtacctg cgatgtggtg ggcggatcta tggacatcgg
     1141 gcgcctgccg ctcttccctg ggatgtacgg tgcggcacga tagcgaatcg ccaccggcgg
     1201 accggcacgt ccgtcctttc gcggaggcgc agagatgacc gcagcacagg ctccacccca
     1261 gcaggagtcc acgcggccac gggagtcgat cagcgcaccg cgtgccacgg tgaccgcccg
     1321 gctgcgctcg agcggttcgc gcctggggcc gctgcccgtc atcaacctgg tcgtgttgga
     1381 aatcgggctg gccgttggtt tggcgctcgt cacgttcgat accggcctgt ggggggcagc
     1441 actgatcttg tcgctggtcg cgctgcccct ggcgctcggg cgatggcatg gccagtggct
     1501 cgtgcggtgg gtccagctcg gcactcgata cctggtgcgc tcgcacggca ggagcgtcac
     1561 cggcccggac ccctccgcac cggccggcac gtcgacctcg catcccgatg atccccgggt
     1621 caccctgctc cgtctgctcc tcccggacct caccatcgcg cactgcgctg atcgtctggg
     1681 cgaaccactg ggtctcacgt ggcaccacgg cacctgcacc gcagtgctgg aagtggacgc
     1741 aggagcatcg atgatcgctc ctgtcggcag cgccgccggc ctgccgctcg gcgcactcgc
     1801 ctcctgcctg gaagaccgtg gtgtgacgct ggacgcgatc caggtgatct ggcactgcta
     1861 cccgggcagc gccgccttgc cgtcgtcgtc cccggcgttg cgctcctact tggaggtcct
     1921 gggtccgctg cctgcagcgg cccgccgcac cacctggatc gcggtgcgcc tggatcccca
     1981 ccgctgcccg gccgcggtgg ccgaacgcgg cggtggtgcg acgggttgcc accgggcact
     2041 gatcggcgcg ctgtcccggg tgcgcgcaac cctcgagtcc cagggcgtgt caacccggcc
     2101 gctcgacgcc gaccagctgt tgcgcgccgg gatcttggcc gctgagctct ccgcggtggc
     2161 cggtaccggg cagccggtgg cgctgagtga aaggtggagt gcggtcaccg ccggcggggt
     2221 ggggcacgcc agttacgcca tcaccgggtg ggggctcacc ggtgctgtgc ataacctcaa
     2281 cgcgctgaca ggagtgcgcg cgctgtccac cacggtggcc ctgtccatat caccaggatc
     2341 accagacgaa gctaccggag ccggagttga cgaggtcggg ctgcgaggtc tgatccgact
     2401 cagcgcccgc aaccctgccg aactcgagtc cgccgatgac cacttgcgcg ccgtctcgca
     2461 acggctcggg gtggcactgc gccccctcga cgggctgcaa gccgctggac tggccgcgac
     2521 cctgccactg ggggcgcccg gatgagccgg acccctcatg agtagaacac tgggtaatgg
     2581 cagcgcagcg ggtgcggtgg cgccggagtt cctggtcacc cccggcctgc tcgacgcggt
     2641 cagcccctcc ggagaccggg ggggcatggt gttgggatgc gggcctcaca acgaaccgct
     2701 cagcgtgtcg gtgctgcgtc cgcaacccac ccgcctcgtc gtcgtgggtg gcctctacct
     2761 ggcccgccag gtcgcattac gagcgatggc caccggcgcc tgggtgatca tcgtcacggg
     2821 tcggcccgac gcctggcagc tgatcgcgca agccgccggg acaggtcccg acggacgtcc
     2881 tgccccgctg gtacagatcc gccagttggc accgctcgag ctgcctcgag cctccgagga
     2941 tgcacccctg ctggtggtgc acgacggcgg cgcggtacct caggaactgt tcccaccacg
     3001 gtcaccatgg cacaccaccc tgtatgtgct gccctacctg catccgcagg ccgagggcac
     3061 cgccgtcaac gctgatctgg tgctgctcca gcagctccca gccgctcagg cgcagctcgc
     3121 cgccaggatc tggcagctgc cagccgcgat ggctgcgcaa ttgtcggcgt tgaccgacga
     3181 tggcgtcgca gcgctgggcc ccgatctgtg gctgccactg cggctggtca ccacccccgc
     3241 cgaacgcgag atcctcggcc cggtccgccg gggagactga cgcaccgggc tattcgggcg
     3301 gcatggcgtt caggggttgg ggtgcacctg gcgccgcacg gcgcgggtct gtgcggcacg
     3361 ggcagccagt tgatcgtcgt gcgggtagtc cacacccacc agggtgaggc cgtgcgcggg
     3421 cgccacggtc acctcgctgg tgcgagtggt gtggcgaagc agggcggcag gccagtccgg
     3481 gggacgtcgg ccttctccga ccgccagtag ggcacccacc aggctgcgca ccatcgagtg
     3541 gcagaacgcg tccgctgcga cgtgggcgat cagcaggtgt ggttctcccc aggtccattc
     3601 caggcgctcc agcgcccgca ctgtgctggc gccctcccgg cgacggcaga acgcggcgaa
     3661 gtcgtgctca ccgagcaaca acccgctggc catgttcatc gcggcgtcgt cgagccggcg
     3721 ggggtggctc acggtgtcgt acctgcgcag cggatcgact ccccatggcg cgtcgcacac
     3781 ccggtaccgg tagtgccgtc gcagcgccga gaaccgcgca tcgaaggtgc gcggcacctg
     3841 ccgcatcgcg gggacccgga tatccggcgg tagcagccga gccagccgat ggacgagcag
     3901 ctcaggggac agcgcctcgg gcggcacatc aaggtgcgcg acctgcccgg tggcgtgcac
     3961 ccccgcgtcg gtgcgtccgg cgacggtgag gaaggccggg atccgcgcaa tgaccgccaa
     4021 ggcgtcctcc agcaccccct ggactgtgcg ccgtcctggt tggcgggccc atccagagaa
     4081 accaccgccg tcgtaactga tgttcaggca gtagcgcagg agcccgccgt ccccggtggg
     4141 tgcggcgggc tcctgcggtg ctgtgctggg ggtcaggact cgcccccaac ctcctgctga
     4201 gcgggtggcg gggttttctg ctcggctgct gcatccgcag ccccggtctc atcgggtgcg
     4261 gtatccgcgg cagtgcgctc ttcactggag gttggctgtt tgacctgcga gcggctcttg
     4321 aaggcctggc gcttgacctc ctcgacctcc gcggcggtac gctcagtcac cagcgcgatg
     4381 atcgccatcg gagcgttgtc gcccttgcgt ggcagcgtct tgacgattcg ggtgtagccg
     4441 cctggccgac cttcgaactg tgggccgatc tcggcgatca gcttgtgcac cacgtccttg
     4501 tcccggatca ctcgcatgat ctcgcgacgg ttgtgcaggt ccccgcggcg cgccttggtg
     4561 atcagccgct cggcgaacgg acgcagccgc ttggccttcg cctcggtggt ggtgatccgg
     4621 ccgtggtcga acagcgatgt cgccagattg gccaacatca accgttcatg ggccggcgaa
     4681 cccccgagcc gggggccctt ggtcggcgtt ggcattgtgg ctcccttcgg tcgccctgtg
     4741 agtggtgatg cgagctatag ctcgcatcac cactcacagg agctagagtt gctcagtctc
     4801 ggcgtaatcg tggccgtcgt cggggccgta atcgggacca ttgtcgatcc cgttgtcgct
     4861 ggcgtcgccc cacccgtcga tggagtattc ggccgccacc gctgacgggt caaatccggg
     4921 tgggctgtct ttgagctgca gaccgaggcc cgccagctta agcttcacct cgtcgatcga
     4981 cttggcaccg aagttgcgga tgtccagcag atccgcctcg ctccggctga ccaactcgcc
     5041 gacggtgtgg atgccctccc gcttgaggca gttgtaggag cggaccgtga ggtccagatc
     5101 ctcgatcggc atggcgaatg ccgcgatcgt gtccgcctcg gccggtgagg gaccgatctc
     5161 gatgccctcg gcgtcgatgt tgagctcgcg ggccaggccg aacagctcca ccagggtgcg
     5221 gccagctgag gccagtgcat cccggggggt gagcgacggc ttggtctcca cgtcgaggat
     5281 cagcttgtcg aagtcggtgc gctgctccac ccgggtggcc tcgaccttgt aggtcacctt
     5341 caacaccgga gagtagatgg agtccaccgg gatccggccg atctccgcgc cggaggcctt
     5401 gttctgcacc gccggcacgt agccacggcc ccgctccaca accagctcga tctccagctt
     5461 gcccttgccg ttaagggtgg cgatatgcag gtcagggtta tatacggtga cgccggacgg
     5521 cggcacgata tcccccgcgg tgacgtcacc cgggccctgc ttgcgcaggt acatcgtcac
     5581 cggctcgtcc tcctcggagc ccaccacgag ctccttgagg ttgaggatga tgtcggtgac
     5641 gtcctctttg acgcctggaa cggtggtgaa ctcgtgcagc accccatcga tgcggatgct
     5701 ggtgaccgcc gctccgggaa tggatgagag cagggtacgc cgaagcgaat tacccagggt
     5761 gtagccgaat cccggttcca gcggctcgat gacaaaccgg gaacgggtga agtcgaccgg
     5821 ttcctcactg aggtttggtc gctgagtgat cagcataact aacattcctc ctgtaggtgc
     5881 ccactatttg acaccatccg gtttctacga cccattatgg agacatatcg ggatcgcagg
     5941 ggggttgccc accccgatat gcctccatgt cggggtgggc ggggttatct ggagtagagc
     6001 tcgacgatga gttgttcttg gagcgggacg tcgatctgag cgcgctcggg caggcgatgc
     6061 accagcacgc gcagggtggc ggggacgact tgcagccagc cggggaccgg gcgatctccc
     6121 accgtctcct tggccaccag aaacggcagc gtcggcaccg acttgggttt gacgtcgatg
     6181 atgtcgaact tggacacccg gaaactggga acgtccacct tgacgccgtt caccacaaaa
     6241 tgcccgtggg tcaccaactg gcgtgcctgg cgtcgggtac gggccagccc ggcccggtag
     6301 atgacgttgt ccaggcggga ctccagaatc tgcagcagcg tgtcaccggt cttaccagga
     6361 cggcggttgg cctcctcata gtaccggtgg aactgctttt ccatgacgcc ataggtgaag
     6421 cgggccttct gcttctcctg catctgcagg agatactcgc tctccttgat ccgcgcgcga
     6481 ccgtgctggc cggggggata tggccggcgc tcgaaggcct ggtcgccgcc gaccagatcg
     6541 gtcttgagcc ggcgggactt ccgggttacg ggtccggtgt accgagccat cgcttagctt
     6601 ctcctctccc cgcgcctcag acccggcgcc gcttgggcgg ccggcagccg ttgtgcggct
     6661 gcggggtcac gtcctggatg gtgccgacct caaggccagc agcctgcagc gatcggatcg
     6721 ccgtttcccg gcccgaaccc ggacccttca cgaagacgtc gaccttcttc atgccgtgct
     6781 cggccgcctt gcgggcggcg ttctcggctg ccatctgcgc ggcgaaaggc gtggacttgc
     6841 gggagccctt gaacccgaca tggccggccg aagcccatgc gatcaccgca ccggtggggt
     6901 cggtgatcga aacgatcgtg ttgttgaacg tcgacttgat gtgcgcatgg ccatgcgcga
     6961 cgttcttctt ttccttgcgc cggactttct tgacaccggc gcctgtccgt gctctgggtg
     7021 gcatacggtt gaactcctac acaggtcttt gggtggctag cgggcctgaa gttctcagtt
     7081 acttcttccc ggccttcttc ttgccggcga ccgtcttctt cggacccttg cgggtgcggg
     7141 cgttggtctt ggttcgctga ccacgcaccg gcagcccgcg gcgccaccgc aggccctcgt
     7201 agcagccgat ctcgatcttc cggcgaatgt ctgcctgaac ctcgcgacgg aggtcaccct
     7261 cgaccttgag gtgttcttcg atgtagtccc gcagacggat gagatcctcg tcggagaggt
     7321 ctttggagcg cagatcggga ctcaccccgg tggcgctgag aatctcgtgc gagcgggtac
     7381 ggccgatgcc gtagatgtag gtcagcgcga tctccatccg cttgtcgcgg ggtagatcaa
     7441 cgccggagag tcgtgccatg cggggcgtgt ctcctgtctc gtcgtcacca ggtctgctcc
     7501 ccgcccgtcc cgtatgacgg tgacaccgtc ctcgggcccc ggcctggcgt ccgggggtat
     7561 caccgatccc ctgtggatcg ggtggtgcgg ggaggtcttc tcgcgccgtt cgatcagcga
     7621 cgtcgtgcct tgctcagctg tgtctgctta gccctggcgc tgtttgtggc gcaggttctc
     7681 gcagatcacc atgaccacgc cgtggcggcg gatcactttg cacttgtcgc agatcttctt
     7741 gacgctcggc tttaccttca cgtcagctct cctggtcacg gggccgggca acggccccgg
     7801 gccttcagtt gtggtgtctt acttgtagcg gtagacgatg cgacctcgag acagatcgta
     7861 gggcgaaagc tccacgacca cgcggtcctc gggcaggatg cggatgtagt gctggcgcat
     7921 cttgccgctg atgtgcgcga gaacgcggtg accgttctcc aactcgacgc ggaacatcgc
     7981 gttggggagt ggttcgacca ccttgccctc gacctcgata gcgccgtcct tcttgcccat
     8041 atcctccgcg ttcctgctgg tagccgtgtt gtcgggtggt ggccctgccg cgacgcaggc
     8101 accggccagt tccaagacgt ggggaggcac cagtacggag tgcggggacg caccgctgag
     8161 caggaaacct gcgcagatac ctgcagacac gctagaaacc ggcgcaatgc tcgcgccgat
     8221 aacatagctt acgtccaggt cacgctcggg ttcaaaccgc ccccgcgctg atcaccttgc
     8281 aggcctgagg gctcgccctc gctcgcctat ccagccggcc agcagcatcg caccccacgg
     8341 gcccgcgacc cagacccacc aagggtagat ccagctcatg gcggccagcg acaccacggc
     8401 ccagatcagc aggttgatca cgctcgcgct ggcccagacg gcgaccgcgg cccgcccgcc
     8461 gcgcccatgc cggtgctgcc agtggggttg tcgaacctca cggtttaccg gtaggcggac
     8521 ctgcggtaga tcagcggtga gcgtctcgag ctcgccatag gttcggg
//
LOCUS       DASVXZ010000254         3923 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_475396, whole genome shotgun sequence.
ACCESSION   DASVXZ010000254 DASVXZ010000000
VERSION     DASVXZ010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3923
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475396"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2106
                     /gene="polA"
                     /locus_tag="VF788_05195"
     CDS             <1..2106
                     /gene="polA"
                     /locus_tag="VF788_05195"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005465489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEX8933580.1"
                     /translation="IPGVGDKTAAKWVREFGSLDALIDRVDEVKGKAGDALRENLASV
                     LLNRRLTELVRNVELPEQPADLVLKPWDRDAVHRLFDELEFRVLRDRLFATLSAPEPE
                     AEEGFEIRGTAIESGAVADWLDAHARDGGRFGLAFHGSWARGAGDLDSLALAAPDGEG
                     GYLDPRALTPDDERALAQWLADPDVPKAAHDAKPLLHALRARGITLAGLTSDTALAAY
                     LVRPGQRSFDLADLVLRYLQRELRVESSDIGQPSLFEDEDTAARVAEGILRARAITEL
                     ADALDAELDRIAGRALLRDLELPLLAVLAELETAGIAVDGDVLAELETGFAAAVKQAE
                     QDCFGVIGREVNLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQTLYASTGHPLL
                     AHLLAHRDATRLKSTVDGLLKTVADDGRIHTTYNQTIAATGRLSSTEPNLQNIPIRTE
                     SGRRIRQAFVVGPGTGDIRWAELMTADYSQIEMRIMAHLSEDTALIEAFTSGHDFHAA
                     TAARVFGVDAAAVTGEQRAKVKAMNYGLAYGLSAFGLSAQLRISAEEARALMEEYFAR
                     FGGVRDYLRSIVDKARTEGYTATIMGRRRYLPDLVSDNRQRRDMAERMALNAPIQGSA
                     ADIIKVAMLGVAQALRGEGLRSRMLLQVHDELVFEVAEGERAALEAVVRREMGSAYAL
                     DVPLEVSVGVGHSWNDAAH"
     gene            complement(2148..3041)
                     /locus_tag="VF788_05200"
     CDS             complement(2148..3041)
                     /locus_tag="VF788_05200"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8933581.1"
                     /translation="MTDAPQAEFSAQGSRHQRAEAALGTTGVVKRPVSETETVVANRR
                     WWDADAEDYLAEHGDFLGLADFVWCPEGLRESVVGLLGEVTGRRVLEVGCGSAPCARW
                     LAEQGAQVVGLDLSAGMLRYAMDGARETGISVPLVQADATRLPFTDGSFHLVCSAFGA
                     VPFVADSAAVMREVARVLRPDGRWVFAVTHPMRWIFPDDPGEAGLTVAQSYFDRTPYV
                     ETDALDNPTYVEHHRTLGDRIREIVAAGLVLEDLLEPEWPPGLDRQWGQWSPLRGALY
                     PGTAIFCCRLASPRRVSPSLT"
     gene            3316..>3923
                     /locus_tag="VF788_05205"
     CDS             3316..>3923
                     /locus_tag="VF788_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005159322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEX8933582.1"
                     /translation="MTTDTTTAPAAQQVAINDVGTEEDFLAAIDKTIKYFNDGDIVEG
                     TIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPADVVAVGDEVEALVLQKEDKEGR
                     LILSKKRAQYERAWGNIETLKENEEPVRGTVIEVVKGGLILDIGLRGFLPASLVEMRR
                     VRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVR"
BASE COUNT          713 a         1277 c         1303 g          630 t
ORIGIN      
        1 atccctgggg tgggtgacaa gaccgcggcg aagtgggtgc gcgagttcgg ctcgctggac
       61 gctctgatcg accgggtgga tgaggtcaag ggcaaggccg gcgatgcgct gcgggagaac
      121 ctcgcctcgg ttttgctcaa ccgccggctt accgagctgg tccggaatgt ggagcttcct
      181 gagcagcccg cagacctggt gctcaaaccg tgggaccgtg acgcggtgca ccggctgttc
      241 gacgagctgg agttccgagt cctgcgggac cggctgttcg ccacgctgag cgcgcctgag
      301 cccgaagctg aggagggctt cgagatccgc ggcacagcga tcgaatcggg agcagtagcc
      361 gactggctcg acgcgcacgc gcgagacggt ggccggttcg ggctcgcctt tcacggcagc
      421 tgggcgcgcg gtgcgggtga tctggacagc cttgccctgg ctgcccctga tggcgaaggt
      481 ggctacctgg acccacgcgc gctcaccccc gacgacgaac gagccctggc gcagtggctg
      541 gccgatccgg atgtgcccaa ggccgcacat gacgccaagc cgctgttgca tgcgttgcgg
      601 gcgcgcggca tcacgctggc cggtctgacc agcgacaccg cgctggccgc ctacctggtc
      661 cggcctgggc agcggtcctt cgacctggcc gacctggtgc tgcgctacct gcagcgggag
      721 ctgcgggtcg aatccagcga catcggccaa ccgagcctgt tcgaggacga ggacaccgcc
      781 gcccgagtgg ccgaagggat cctccgagcc cgggccatca ccgaactggc ggacgccttg
      841 gacgccgagc tggaccggat cgccggccgg gcgctgctca gggacctgga gctgccactg
      901 ctggcggtgc tggccgagct ggaaaccgcc ggtattgccg tcgacggtga tgtactggcc
      961 gagctggaaa ccggctttgc ggccgccgtc aagcaagctg aacaggactg tttcggggtg
     1021 attggccgcg aggtgaacct gggttcgccc aagcagctgc aggtggtgct gttcgacgag
     1081 ctgggtatgc ccaagaccaa gcggaccaag accggttaca ccaccgacgc cgatgcgctg
     1141 cagacgctct atgcctcgac cgggcatccg ttgctggcgc acctgttggc gcaccgcgac
     1201 gcgacacggc tcaagtccac ggtggatggg ttgttgaaga ccgtggccga tgacggacgc
     1261 atccacacca cctacaacca gaccatcgct gccacagggc ggctgtcctc caccgagccg
     1321 aacctgcaga acattccgat ccgcaccgag tccgggcgcc ggatccggca ggctttcgtg
     1381 gtggggcccg gcactggtga cattcgctgg gcggagctga tgacggcgga ctacagccag
     1441 atcgagatgc ggatcatggc ccatctttcc gaggacaccg cgctgatcga ggcgttcacc
     1501 tccgggcatg atttccacgc cgcgaccgct gcgcgggtct tcggggtgga cgcggcggcg
     1561 gtcaccggcg agcagcgggc caaggtcaag gccatgaact acggcttggc ttatggcctg
     1621 tccgcgttcg gcctctctgc acagctgcgg atctccgctg aggaggcacg cgcgctgatg
     1681 gaggagtatt tcgcgcgctt cggtggagtt cgcgattacc tacgctcgat cgtggataag
     1741 gcacggacgg agggttacac cgcgaccatc atgggccgcc ggcgctattt gcccgatctg
     1801 gtgagcgaca accgtcagcg cagggacatg gccgagcgga tggcgctcaa cgcgccaatc
     1861 cagggcagcg ccgcggacat catcaaggtc gcgatgctcg gagtggctca ggcgttgcgt
     1921 ggcgaaggtc tgcgctcccg gatgctgctg caggtgcacg atgaattggt attcgaggta
     1981 gccgaggggg agcgtgccgc gctcgaggca gtggtgcgtc gcgagatggg ttcggcgtac
     2041 gcgctggacg tcccgcttga ggtgtcagta ggagtaggcc atagctggaa cgacgccgcg
     2101 cactgagaat cgcctcgccc aggccgccaa gcggaacttg tcgcggttca agtgaggctg
     2161 ggtgagaccc ttcgcggtga ggcgagacgg caacagaaga ttgcggttcc tgggtacagc
     2221 gcgccacgta acggactcca ttggccccac tggcgatcca agccgggcgg ccactccggt
     2281 tcgagcaggt cctccagcac taacccggcg gcgacgatct ccctgatccg gtcacccaag
     2341 gtccgatggt gttccacata cgtggggttg tccagagcgt ccgtctcgac gtagggggtg
     2401 cggtcgaaat acgactgcgc cactgtcaag ccggcctctc ccggatcgtc ggggaagatc
     2461 cagcgcatcg ggtgggtgac tgcaaagacc caccgcccgt cgggccgtag cacccgcgcg
     2521 acctctcgca tcaccgccgc cgaatctgcg acgaatggca ccgcgccgaa cgccgagcac
     2581 accagatgga aactgccgtc agtgaagggc aatcgagtcg cgtcggcctg caccagagga
     2641 accgagatcc cggtttcccg cgcgccatcc atcgcataac gcagcattcc ggctgacagg
     2701 tcgagaccga cgacttgcgc gccctgctca gccagccagc gcgcgcaggg cgccgacccg
     2761 cagccgacct caagcacgcg gcgaccggtc acctcgccga gcaagccgac gaccgactcg
     2821 cgaagcccct cagggcacca gacgaaatcc gccaggccga ggaagtcacc gtgttcggcc
     2881 aggtagtcct cggcgtcggc gtcccaccag cggcggttgg caaccactgt ctccgtctcg
     2941 ctgaccggcc gcttcaccac accggtggtg cctagcgcgg cctccgcacg ctgatgacga
     3001 ctgccctgcg cggagaactc cgcttgcggc gcgtctgtca ctggggcagt ctctcaccaa
     3061 cacgccgccg cgcgccgggg gtcgagtttg ctgctctgac tcctgcctgg gtaggatcga
     3121 attgcgctgt ggtttcgtgc tgcccaggtt gtcagctagc tcatcgacga gtagtgatct
     3181 accccggtga ggtcaatctg tcgcagtgcg acaatcagcg cagcgccacc agaaatgctg
     3241 cgtcacagaa actccgctac gacagtcaac acaacaccga ccactcgacc ctatcccttc
     3301 ggagcacccc accgcatgac caccgacacc accaccgccc cggccgccca acaggtcgcg
     3361 atcaacgacg tcgggacgga ggaggacttc ctcgccgcca tcgacaagac catcaagtac
     3421 ttcaacgatg gcgatatcgt cgaaggcacc atcgtcaaag tcgaccgtga cgaagtgctg
     3481 ctcgacatcg gctacaagac cgagggcgtt atcccgtccc gcgagctgtc catcaaacat
     3541 gacgtcgacc cagcagacgt cgtcgcagtg ggcgatgagg tcgaggccct ggttctccag
     3601 aaggaggaca aggaaggccg gctcatcctc tccaagaagc gcgcccagta cgagcgcgcc
     3661 tggggcaata tcgaaaccct caaggagaac gaggagccgg tgcgcggcac cgtcatcgag
     3721 gtggtgaagg gcgggttgat cctcgatatc gggttgcgtg gattcctgcc cgcctccctg
     3781 gtcgagatgc gtcgagttcg cgatctccag ccctatgtgg gtcgcgagct ggaagctaag
     3841 atcattgaac tggacaagaa ccgcaacaac gtggtgctct cacgtcgcgc gtggctggag
     3901 cagacccagt ccgaagtgcg cag
//
LOCUS       DASVXZ010000255         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1358007, whole genome shotgun sequence.
ACCESSION   DASVXZ010000255 DASVXZ010000000
VERSION     DASVXZ010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1358007"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..274
                     /locus_tag="VF788_05210"
                     /pseudo
     CDS             1..274
                     /locus_tag="VF788_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005142312.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
     gene            complement(317..1488)
                     /locus_tag="VF788_05215"
     CDS             complement(join(317..1227,1227..1488))
                     /locus_tag="VF788_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612020.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEX8933583.1"
                     /translation="MQEKRRKYSSEFKAEAARLVVETSRPIVDVAREIGVHEGTLGSW
                     VNKYRTEHAGDEPPLTMSERARLRELERENRELRMKTEFLGKAGRLLRAGVSVTDKFA
                     FIDAEKAMFPIVKMCVWLEVSTSGYYEWRDRPASATAQRRQRLAVLIQAIFDESDGTY
                     GYRRVHAALARQGDGCGPELVRDLMRELGLVPCQPRPWRPMTTQPGDGADAVPDLVGR
                     DFRADAPGRKLVGDITYLPTWQGFAYLATVIDCCTKECIGYAIAEHMRAELVIDALRM
                     AARNCDLAPRAIFHTDRGCQYLSRAFAEVAAQLDVRHSMGRKGSCFDNAQAESFNAIL
                     KVERVNRTVYPTREHARKDVTRYIEFRYNTKRLHSALGYRTPREAHADYQNQRSTA"
BASE COUNT          273 a          494 c          446 g          292 t
ORIGIN      
        1 taccacgccg agcgggaggt gaccacggcg gcgggtgcgg tgccggtcaa gcagccgcgg
       61 gtcaaacgac aagcacatcg atgaggccac gggtgagcgg aagcggttct cctcggcgat
      121 cctgccggcc tgagcacgca agtcccaggt gagcgaggtt ttgccactgc tgtacctgca
      181 tggcctctcg acgtcggact tcggcccggc gttggagcag ttcctcggca ccggccacgg
      241 cctgaccgcg agcagcatcg gtcggctcac caccctgggc cgccctacgt tttccggata
      301 gatactattc gtgttgttag gccgtcgatc gctggttctg gtagtcggcg tgagcttccc
      361 gcggggttcg gtagcctagc gccgagtgga gacgttttgt attgtagcgg aactcgatgt
      421 agcgcgtcac gtctttgcgg gcgtgttcac gcgttgggta cacggttcgg ttgacccgct
      481 cgactttcag tatcgcgttg aacgattccg cttgcgcatt atcgaaacac gatccttttc
      541 gtcccataga atgacgcaca tcgagctggg cggccacctc agcgaacgct cggctaagat
      601 actgacaacc ccgatcggta tggaaaatcg ccctcggtgc gaggtcacag ttacgcgcgg
      661 ccatgcgcaa cgcatcgatg acgagctcgg cgcgcatgtg ctcagcgatg gcatacccga
      721 tgcattcttt ggtgcagcag tcgatgaccg tggccagata ggcgaaaccc tgccatgtcg
      781 gcaaataggt gatgtctccg accaatttcc ggcccggcgc gtccgccctg aagtcgcgtc
      841 ccaccaggtc ggggaccgcg tcagcgccgt cacccggctg cgtggtcatc ggccgccacg
      901 gccgtggctg gcacgggacc aagcccagct cccgcatgag gtcacgaacc agctcgggac
      961 cgcagccgtc gccctgacga gccagcgcag cgtgtacgcg gcggtacccg tacgtgccat
     1021 cggactcatc aaaaatcgcc tggatgagaa cggccaagcg ctggcgacgc tgggcggtgg
     1081 ccgaggcggg tcggtcgcgc cactcgtaat agcccgaggt agacacctcg agccaaacac
     1141 acatttttac gatcgggaac atagccttct ccgcgtcgat gaacgcaaac ttatcggtca
     1201 ccgatactcc tgcgcgaaga aggcggcggc tttccccaag aactcggttt tcatccgcaa
     1261 ctcgcggttt tcccgctcaa gttctcgcag ccgcgcccgc tccgacatgg tcaacggcgg
     1321 ctcgtcgccg gcgtgctcgg tccgatactt gttcacccag gatccgagag tcccctcgtg
     1381 aacgcctatc tcccgagcga catcgacaat tggccgcgac gtctcaacca ccaaccgcgc
     1441 cgcctcagcc ttaaactcag agctgtattt tcgccgtttc tcctgcattc atccccctcc
     1501 attcc
//
LOCUS       DASVXZ010000256         1960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_834594, whole genome shotgun sequence.
ACCESSION   DASVXZ010000256 DASVXZ010000000
VERSION     DASVXZ010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_834594"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VF788_05220"
     CDS             complement(<1..552)
                     /locus_tag="VF788_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEX8933584.1"
                     /translation="MIGLGDPTGTPEWAALAKHHDRIKDLHLRELFAADPNRAASLRV
                     HAGDLLVDYSKHRVTEETIQLLVVLAARAGLIQRREAMFRGDHINTTEDRAVLHVALR
                     MPPQERLVADGQDVVGDVHAVLTQMSGLAERIRSGAWTGHTGRRIRTVVNIGIGGSDL
                     GPAMAYQALADYATPQLSCRFVSN"
     gene            complement(575..1300)
                     /locus_tag="VF788_05225"
     CDS             complement(575..1300)
                     /locus_tag="VF788_05225"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HEX8933585.1"
                     /translation="MSWRSDWTPMMGEMAVTVSARREVILFDIDGTLIITGGAGATSW
                     RLAFDELYGIPADIGQFTDAGMTDPEVGRKTFEAVLHRPPERAEFTRLMERRLHYLHT
                     TVAQSRGYHVLDGVETLLPQLIEEGYLLGLVTGNVEASAHIKLHRANLNRFFSFGGYG
                     SDSTDRAELTLVALRRASLVYGEQVNPAQCLAVGDTPHDVAAAHAAGVAFVGVGSHHF
                     TAEQLRQAGADYAIASLREGLPL"
     gene            complement(1755..>1960)
                     /locus_tag="VF788_05230"
     CDS             complement(1755..>1960)
                     /locus_tag="VF788_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933586.1"
                     /translation="RLVRPGSDRARADDLPIQLRWSPLIAGSTTLKASVLRGTGGSNP
                     SASATYEQHERCAEHAVGVSVVR"
BASE COUNT          332 a          685 c          605 g          338 t
ORIGIN      
        1 attggacaca aaccggcagc tcagttgcgg ggtggcgtaa tcggccagcg cctggtaggc
       61 catggccggc cccagatccg agccgccgat gccgatgttg acgaccgtgc ggatgcgccg
      121 cccggtgtga ccggtccacg ccccgctgcg gatccgctcc gccagcccgc tcatctgggt
      181 tagcaccgcg tgcacgtcac cgaccacatc ttggccgtcg gcaaccaagc gctcctgcgg
      241 aggcatccgc agggccacgt gcaacacagc ccggtcctcc gtggtgttga tgtgatcacc
      301 acggaacatg gcttcccggc gctggatcag ccccgctcgg gcggccagaa ccacgagcag
      361 ctggatggtc tcctcggtca cccgatgctt ggagtagtcc accagcaggt caccggcgtg
      421 gacacgcaga ctggccgccc gattcgggtc agcggcgaac agctcacgca gatggaggtc
      481 cttgatccgg tcgtggtgct tggccagcgc cgcccactcc ggcgtgccgg tggggtcacc
      541 taatccgatc atgtcggcct ccggctgttt gcgctcacag gggcagccct tcccgcagcg
      601 aggcgatggc gtagtcggca ccggcctgcc gcaactgctc ggcggtgaag tggtggctgc
      661 ccacccccac gaaggccacc ccggcggcgt gtgccgcggc cacgtcgtgc ggggtgtcac
      721 ccaccgccag gcattgcgcc ggattgacct gctcgccgta aaccaggctg gcccggcgca
      781 gcgcaacgag ggtcagctcg gcccggtcgg tggaatccga gccgtatccc ccgaaggaga
      841 agaaccgatt gaggttcgct cgatgcagct tgatatgcgc ggaggcctcg acgttgccag
      901 tgaccagacc caacaggtaa ccctcctcaa taagctgggg cagcaacgtc tcgactccgt
      961 cgagcacgtg gtagccgcgg gactgcgcca ccgtggtatg caggtagtgc aggcgccgct
     1021 ccatgagacg agtgaactcg gcccgctccg gtggccggtg caacacggcc tcgaaggtct
     1081 tgcggcccac ctccgggtcg gtcatcccgg cgtcggtgaa ctggccgatg tcggccggga
     1141 tgccatacag ctcatcgaag gccaaccgcc atgaggttgc gccggctccc ccggtgatga
     1201 tcagggtgcc atcgatgtcg aataggatga cctctcgcct agctgacacg gtcaccgcca
     1261 tttcccccat catcggcgtc cagtcgctgc gccagctcac ggaccgtgcg ttcagtgacc
     1321 tgcccaacag gcaccatcat ccacatcgct cgtgacggct gcagtcccac catgcccagc
     1381 tgcatcccac ccgcccccca cgcaccacat caaccagccg gctcgctgct tagcgttccc
     1441 cgcctattcc tcaatcacac tcaccagtcc acatccatat cggcatcgtc caaccaagta
     1501 gggctgagca gcacgtagtc cgctagctac ggggcaagcc acactgtcca gcagatgcaa
     1561 ccgctgggcc attggacggc gagccaggcc agcgtgatcc tctccgtctt gtacatctct
     1621 tacctcgcgg tggccattcc gggtggatgg gtcatcgacc ggttcggtta tcggaggttc
     1681 gtgaccagct ctctggcgat cacaaccgct ggtgtggcgg tcacgtcgta tgtccatgag
     1741 tacggtggca gggcctacct gaccacggag acacccacgg cgtgctccgc gcagcgttcg
     1801 tgctgttcat aggtggcgga agcggaggga ttcgaacccc cggtgcctct cagcacgctc
     1861 gctttcaagg tcgtcgaccc ggcgatcagc ggtgaccatc tcagctgtat gggcaggtcg
     1921 tcggcccggg cccggtcact cccgggcctt actaaccgcg
//
LOCUS       DASVXZ010000257         5044 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1268724, whole genome shotgun sequence.
ACCESSION   DASVXZ010000257 DASVXZ010000000
VERSION     DASVXZ010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268724"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VF788_05235"
     CDS             <1..233
                     /locus_tag="VF788_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933587.1"
                     /translation="LLADEPTGNLDTASSLEIMKLLIELNDAGRTVVIITHEEEIARF
                     AKRVVRLRDGRIVSDRAQPTPVNGSSADSYEL"
     gene            357..1625
                     /locus_tag="VF788_05240"
     CDS             357..1625
                     /locus_tag="VF788_05240"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933588.1"
                     /translation="MSLKEALLVALRALRAHRLRSTLTMLGLIIGVSAVVLLSACGLG
                     VKNSVDARIEPVSNNITIVSQAEAVPNGPPAQPLTDADADALQQAPDIASIAPAVTGS
                     PTPGSSTTGTLIATNAVHDLTANVIGTTDNWVTTNNRNLTAGSFFDDAQDREAARVAI
                     LGPTVARTLFGQSSAAMDQTVQINHVPFRVIGVMASYGQQLDNTAVMPLGTARRYVFG
                     YGQGSTTHQLHQITAQATQQANVPAAMAEITRILDTRHHITAPQKRDYQIQTLGSRLQ
                     SFNQIVSILVLFTPAVAGLSLVVGGIGVLNIMLVSVTERTREIGIRKAIGATSRAILE
                     QFLLESTVLASLGGFLGVGVGIGLALLIGTIAPAVDPASGALAGFRPVLSILPVLVAF
                     TITLAIGLIAGGYPAYRAARLRPVEALRFE"
     gene            1635..2783
                     /locus_tag="VF788_05245"
     CDS             1635..2783
                     /locus_tag="VF788_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX8933589.1"
                     /translation="MRRRLFEAEHEGFRESVRTFLAKEVVPHLETWDAAGIVPRELFT
                     TAGAAGFLGMAIPEELGGGGVSDFRFNAVLDEEIMTAGAAGAGLGLSLHNDICLPYFL
                     DLATEEQQRRWLPGIASGKLITAIAMTEPGMGSDLAGMATTAVRQSDHYLVNGSKTFV
                     SSGINADLVITAVKTDPRERHLGMSLLVLERGMAGFERGRNLAKLGQHAQDTAELFFR
                     DVRVPVANLLGTQGRGFAHLVDRLPQERLSMAVSAVAGARAALELTLAYVKDRRAFGV
                     PIGSFQNTKFRLAEMSTEIDIAQTFTDQCIEALGEGELTVADAAKAKWWCTELQGRVV
                     DTCLQLHGGYGYMLEHPISRAFADARVTRIYGGTTEIMKEVISRSLGL"
     gene            2917..3339
                     /locus_tag="VF788_05250"
     CDS             2917..3339
                     /locus_tag="VF788_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsgA family sporulation/cell division regulator"
                     /protein_id="HEX8933590.1"
                     /translation="MTSYDGATVAQDMFALLHEAAAPVVTRWTYCIDDPFAVTIEIQT
                     RGNRFVDWVLARDLVVAGLSAPAGIGDVRVRPANMGEWEVTLVEICSPDGHAVLEVDR
                     DLLRQFVQATIDRVPLGSEGMAVDIDAEIEKLTRSCAD"
     gene            3347..3523
                     /locus_tag="VF788_05255"
     CDS             3347..3523
                     /locus_tag="VF788_05255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933591.1"
                     /translation="MSPKVCRRPAGRGIQRSRGRDEAQKVWGTAAEAGDTEAAFNLGV
                     LLVRRGELEEAANW"
     gene            complement(3682..4575)
                     /locus_tag="VF788_05260"
     CDS             complement(3682..4575)
                     /locus_tag="VF788_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933592.1"
                     /translation="MPVDDKTAPVDDRRAFEAGLDALEAPALPSRPGPGAVFVRSVLP
                     PLVAVAAFIVLWQLAYSSELKPSYALPSPLDVLHTFGQTVGDGRAWDAISISVTRGAA
                     GFLASLAVGTVLGLAMWRSRWLRAALGPFVSGLQSLPSVAWVPAAIIWFGLSDAAIYA
                     VVLLGAVPSIANGLLAGFDQVPPLLDRVGRVLGLGFAGRIRHVLLPAALPGYLAGLKQ
                     GWAFSWRSLMAAELITYSPALGIGLGQQLNIGRELNSMDLVIASIFLILVVGVAIELL
                     VFAPVERRVLQARGLTVARSR"
     gene            complement(4565..>5044)
                     /locus_tag="VF788_05265"
     CDS             complement(4565..>5044)
                     /locus_tag="VF788_05265"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933593.1"
                     /translation="NVELALRLAGVPRSQRRAQALELLTLVRLDNAADRRPHELSGGM
                     RQRVALARALAQDSALLLMDEPFAALDAITRDALHEELIRLWSEQGLSVVFVTHNVRE
                     AVRLGQRVLLMSSRPGRIVREWQVELSQPRTIESPGVSALAAEITHHLRAEICRHAR"
BASE COUNT          909 a         1712 c         1630 g          793 t
ORIGIN      
        1 tgctgctcgc cgatgagccc accggcaacc tcgacacggc ctccagcctc gagatcatga
       61 agttgctcat cgagctcaac gatgccggcc gcacggttgt catcatcact cacgaagagg
      121 agatcgcccg cttcgccaag cgggtcgtgc ggctgcgcga cgggcgcatc gtgagtgacc
      181 gtgcgcagcc gacaccagtc aacggttcgt cagcggatag ctatgaattg tgacgaaatc
      241 cgggaattcg ctgggaattc gccgaactcc ttgcgcccgc cccgatcacc ggttacccgt
      301 gaagtgatgt ccttaccgga cagtgcagta ccgcggagtc ggggaaggac cagtagatga
      361 gcctcaagga ggcgttactc gtcgcgttac gcgcgctgcg cgcccaccgg ctgcgctcca
      421 cgctgaccat gctcggcctg atcatcggag tctcggcggt ggtgctgttg tccgcctgtg
      481 gcctcggggt gaaaaactcg gttgacgcgc gcatcgaacc ggtgtcgaac aacatcacca
      541 tcgtgtcgca agccgaggcc gtgcccaacg ggccgcctgc gcagccgttg accgacgccg
      601 acgccgacgc cctgcaacag gcgcctgaca tcgccagcat cgccccggcc gtcaccggtt
      661 cacccactcc aggatcatcg acgaccggaa cgcttatcgc gaccaacgcc gtccatgacc
      721 tcacggcgaa tgtcatcggc accacggata actgggtcac gaccaacaac cgcaacctca
      781 cggctggatc gttttttgac gacgcccagg atcgcgaggc ggccagggta gcgatcctgg
      841 gtcccaccgt ggcgcgcacg ctgtttggtc aaagctccgc agcgatggac cagaccgtcc
      901 agatcaacca cgtgcccttc cgggtcatcg gggtgatggc cagctacggc cagcaactgg
      961 acaacaccgc ggtcatgccg ctgggcaccg cccgccgcta cgtcttcggc tacgggcagg
     1021 gaagcaccac ccaccaactc caccagatca ccgcgcaagc aacccagcag gccaacgtcc
     1081 cggccgcgat ggccgagatc acccgcattc tcgacacccg ccaccacatc accgcacccc
     1141 aaaagcggga ttaccagatt caaaccttgg ggtcccggct gcaaagcttc aaccagatcg
     1201 tgagcatcct ggtgctgttc accccggccg tcgctgggtt gtcgctggtg gtgggcggga
     1261 ttggagtgtt gaacatcatg ctggtctcgg tgaccgaacg aacccgcgag atcggcatcc
     1321 gcaaagccat cggcgccacc agtcgcgcga tcctggaaca gttcctcctg gaatccaccg
     1381 tgctggccag cctcggcggg ttcctcggcg tgggagtcgg aatcggcctg gccctgctaa
     1441 tcggcacgat cgcaccagcc gtcgaccccg cctccggcgc cctggccggg ttcaggcccg
     1501 tcttgtccat cctgcccgtg ctcgtcgcct tcaccatcac ccttgcgatc gggctcatcg
     1561 ccggcggcta cccggcctac cgcgccgccc ggttacgccc ggtcgaagcc ctcagattcg
     1621 aataaaatcg agatatgcgc cgtcggttgt tcgaggccga gcatgagggc tttcgggaga
     1681 gcgttcgaac cttcctggcc aaggaggtgg tgccgcatct ggagacctgg gacgcggcgg
     1741 gcatcgtgcc ccgggagctg ttcaccaccg ctggcgcggc cggttttctg ggaatggcga
     1801 tccctgagga actcggcggt ggcggggtgt ccgatttccg gttcaacgcg gtgctggacg
     1861 aggagatcat gaccgctggt gccgcgggtg cagggctcgg actgtccttg cacaacgaca
     1921 tctgcctgcc ttatttcctc gacctggcca ccgaggagca acagcgccgg tggctgccgg
     1981 gcatcgcctc cgggaagctg atcacagcga ttgccatgac cgagccgggg atgggctcgg
     2041 acctggcggg catggccacc accgcggtgc gccagtcgga ccactacctg gtcaatggat
     2101 cgaaaacgtt cgtcagcagt ggaatcaatg ctgacctggt gatcaccgcg gtgaagactg
     2161 acccgcggga acggcacctg ggcatgagcc tgctggtcct cgagcgcgga atggcgggct
     2221 tcgaacgcgg ccgcaacctt gccaagctgg gtcagcacgc ccaggacacc gctgagcttt
     2281 tcttccgcga tgtccgcgtg ccggtggcca acctgctcgg cacacaaggc cgcggcttcg
     2341 cccatctcgt ggaccggttg ccccaggagc ggctgtcgat ggctgtctcg gcagtggccg
     2401 gcgctcgagc agcgttggag ctgacgctgg catacgtcaa ggaccgaagg gcattcggag
     2461 ttccgatcgg gtcgttccag aacaccaagt tccggctggc tgagatgtct accgagatcg
     2521 atatagcgca gaccttcacc gaccagtgca tcgaggcgct gggcgagggc gagctgaccg
     2581 tcgccgacgc cgccaaggcc aagtggtggt gcaccgagct gcagggccgg gtggtggaca
     2641 cctgtttgca gctgcatggc ggttacggct acatgctcga gcatcccatc agccgtgcgt
     2701 tcgctgacgc ccgggtgacc cggatctacg gcggcaccac ggagatcatg aaggaggtga
     2761 tcagccggtc actgggcttg tgatccccgg ccggcctcac ccacctcggg tacatcagtt
     2821 ggggtgaatg tcggggtccg gtggtacgta agaccccagt tgcacgatgt ctctaccgag
     2881 cacctcaact ccccccgcac ggagaggcgg cccacgatga ccagctacga cggcgcaacg
     2941 gttgcccagg acatgttcgc gttgctgcac gaggccgcgg cacccgtggt gacccgctgg
     3001 acctactgca tcgacgaccc cttcgcggtg accatcgaga tccagacccg tggcaatcgc
     3061 ttcgtggact gggtgctcgc ccgcgacctg gtggtcgctg gactgtccgc gccggctggc
     3121 atcggggatg tccgggtccg tcccgccaac atgggcgaat gggaggtgac gctggtcgag
     3181 atctgctccc ctgatgggca cgccgtgctc gaggtggacc gcgacctgct gcggcaattc
     3241 gtccaggcca cgatcgaccg cgtcccgctc ggcagcgagg ggatggccgt cgacatcgat
     3301 gcggagatcg aaaaactcac cagaagctgc gcggactgac catgccatga gtccgaaagt
     3361 ctgccgcaga ccagcaggcc gagggattca acgctcccgc ggtcgagatg aggcgcagaa
     3421 agtatggggc accgccgctg aggctggtga caccgaggcc gcgttcaacc taggtgtcct
     3481 gctggtgcgg cgcggcgagc tcgaggaagc ggccaactgg tgacgcaagg ccgcggacgc
     3541 cggtgaccca gatgccgcgg ccgagcttgg catgctgttg gtacagcgcg gtgagctaac
     3601 tagctcctgg acagtgcgcc cctgtgagtg gcattcgttg ctatagctct gtttcccact
     3661 cacaggggca cagccccctt atcagcggct tcgggcgacc gtgaggccgc gcgcctgcag
     3721 gacccgtcgc tccacggggg cgaagaccag cagttcgatc gccactccga ccaccaggat
     3781 gaggaagatc gaggcgatca cgagatccat cgagttcagc tcccggccga tgttgagctg
     3841 ctgcccgagc ccgatgccca gcgccggtga gtaggtgatg agctcagcgg ccatcaacga
     3901 gcgccaggag aacgcccagc cttgcttgag accggccagg tagcccggca gcgccgcggg
     3961 cagcaacaca tgccggatcc gaccggcaaa gcccagcccg agcaccctgc ccaccctgtc
     4021 gagtagtgga ggcacctggt cgaacccggc cagtagcccg ttggcgatgg agggcacggc
     4081 acccagcagc accaccgcat agatggcggc gtcggacagg ccaaaccaga tgatggccgc
     4141 cggcacccac gcgaccgagg gcaggctctg cagcccgctg acgaacggcc cgagagctgc
     4201 ccgtaaccac cggcttcgcc acatcgccag cccgagaacg gtacccaccg ccagggaggc
     4261 gaggaaaccc gctgcgcccc gggtcacgct gatcgagata gcgtcccaag cccggccgtc
     4321 gcctaccgtc tggccgaagg tgtgcagtac atcaagcggg ctgggcaggg cgtaactcgg
     4381 cttgagctcg ctgctgtagg ccagctgcca cagcacgatg aacgccgcca ccgcgaccag
     4441 cggcggcagg acggatcgga cgaacaccgc tccaggcccg ggccgcgagg gcaacgcggg
     4501 cgcctccagg gcgtccaatc ccgcctcgaa ggcccggcgg tcatcaacgg gcgccgtctt
     4561 gtcatcaacg ggcatggcgg cagatctccg ctcgaaggtg atgagtgatc tcggcggcca
     4621 gagcactcac ccccggggac tcgatcgtcc tgggctggct cagctcgacc tgccactccc
     4681 ggacgatccg gccgggtcga gagctcatca gcaggacccg ctgtcctagc cggacggctt
     4741 cccgcacatt gtgggtgacg aagacaacgg agagcccctg ctctgaccac agccggatga
     4801 gctcctcgtg caacgcatcg cgggtgatcg catcgagtgc ggcgaacggc tcatccatca
     4861 acaacaaggc gctgtcctgg gccagcgccc gggccagcgc cacccgctgc cgcatcccgc
     4921 cggacagctc gtgcgggcgg cggtcggcgg cgttgtccag ccggaccagg gtgagcagct
     4981 ccagcgcctg cgcgcggcgc tgcgagcgcg gcaccccagc cagccgcagc gccagctcga
     5041 cgtt
//
LOCUS       DASVXZ010000258         2006 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_834902, whole genome shotgun sequence.
ACCESSION   DASVXZ010000258 DASVXZ010000000
VERSION     DASVXZ010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_834902"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1312)
                     /locus_tag="VF788_05270"
     CDS             complement(<1..1312)
                     /locus_tag="VF788_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933594.1"
                     /translation="MPKLVVACCVMVLIASVVGAAPSPGSPTRSTTQLLDQKRYVAAG
                     DRAYVIGSEDGHFPPMGWHIRGEMGGVWAHPIKLLDGYWFALDGQWIPQATKFTTGAG
                     YAQMQFPTTDGLNVTRTEFSPDGSPVVLVGLTLQNPNGTSKSVELTMDTHSEIMAAYP
                     WSWTKPSAKCFNQKDVASFDTQSRTLTFQESNKPWYATVGASTRPASGSTGDQFWGPV
                     PSDQQRAYYEYENPTDPNRDTSCSDYARGTGGELVWNLNVDSNQERTIWIAVAGSNSS
                     QSEAQGAVKNALKNPANLLTQKVASRQNLLAQTKVSLPDATLQDAFDWGKLNLADLKR
                     TVTNAQIRDVDEGRAYPNPVATIPKLTGIGAGYPDYPWYFGTDGAYTAYPLVASGQWD
                     TAKAHLQSIRDVSRAVNGSTGKVVHEVVTDGSVYWGTNADPGNTN"
     gene            complement(1407..>2006)
                     /locus_tag="VF788_05275"
     CDS             complement(1407..>2006)
                     /locus_tag="VF788_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEX8933595.1"
                     /translation="LTKDGNPNAGTTYNIGDSGPDNVDQRAVVDPSYLELVRLGIKRW
                     DDPVVLNTVGVVDAQLGVGTPNGTFWHRYNFDGYGEQADGSPWDVGFPAGSQATIGRV
                     WPIFAGERGEYELLASGSASSRLQSIANSGNEGYMLPEQVWDGNPPAGQPEGEGTFSA
                     TPLAWTHAQFVRLAWSIQDGRPVEQPQIVACRYTGNCPN"
BASE COUNT          330 a          627 c          635 g          414 t
ORIGIN      
        1 cgttggtatt gcccgggtcg gcattcgtcc cccagtagac ggagccgtcg gtgaccacct
       61 catgaacgac tttcccggtt gatccgttga ccgcacgaga aacgtcacgg atagactgca
      121 ggtgagcctt ggccgtgtcc cactggccgg aggcgaccaa cgggtaggcg gtgtaggctc
      181 cgtcggtgcc gaagtaccac gggtagtccg gatacccggc gccgatccct gtcagcttcg
      241 ggattgtggc gacggggttc ggataggcac ggccctcgtc cacgtctcgg atctgggcgt
      301 tggtcacggt gcgcttgagg tcggccaagt tgagctttcc ccagtcgaag gcatcttgga
      361 gcgtagcatc gggcaagctc accttcgtct gggcgagtag attctggcgg cttgcgacct
      421 tctgggtcaa cagattggcc gggttcttga gtgcgttctt cacggcgccc tgtgcctcgg
      481 attgagacga gttcgagccc gccacggcga tccagatggt cctctcctga ttgctatcca
      541 cgttgaggtt ccacaccagc tccccacccg tgccccttgc gtaatcagag caactggtgt
      601 ccctgtttgg gtcagtcgga ttctcgtact cgtagtaagc tcgctgctgg tccgagggca
      661 cggggcccca gaactgatcg cccgtggatc cactcgccgg tcgtgtggat gcgcctactg
      721 tggcgtacca gggcttattg ctctcctgaa acgtcagcgt ccgtgactgg gtatcgaagg
      781 aggccacatc tttctggttg aaacacttgg cgctgggttt ggtccagctc caagggtaag
      841 cggccataat ctcgctgtga gtgtccatgg tcaactctac cgacttgctg gtaccgttcg
      901 gattctgaag ggtcagcccc acgagcacca cgggagaacc gtccggtgag aactccgtgc
      961 gcgtgacgtt cagaccatcg gttgtaggga actgcatctg cgcgtagccg gcaccggtgg
     1021 tgaacttggt ggcctgcggg atccactggc catcgagggc gaaccaatag ccgtcgagca
     1081 gctttatggg gtgggcccac acccctccca tctcgccccg gatgtgccag cccatgggcg
     1141 gaaagtgacc gtcctctgag cctatgacgt aggcgcggtc ccccgcggcg acgtagcgct
     1201 tctggtctag cagctgcgtt gtcgaacggg ttggactgcc cgggctcggt gctgctccca
     1261 ccacggaggc gatcaagacc atgacgcagc acgcaaccac cagtttaggc acccggtgcc
     1321 atcgaggtcg attcaccatc atctttcctg ttcctcgctc tacgctatgc tgcaatcacc
     1381 acgccatcgt gcagccgctg tggctcctaa ttggggcaat tccccgtgta ccggcaggcg
     1441 actatctggg gttgctcgac cgggcgaccg tcctggatgg accacgccag gcgcacgaac
     1501 tgggcatgcg tccaggccag cggggtggcc gagaacgtgc cctcaccttc tggttgccca
     1561 gccggcgggt taccgtccca tacctgctcg ggcagcatgt agccttcgtt tccggaattc
     1621 gctatcgact ggagccgtga tgaagcagag ccactggcca agagctcgta ctcgccgcgc
     1681 tcgccggcga agatgggcca gacgcgaccg atggttgcct ggctgccggc cgggaagccg
     1741 acgtcccatg gcgacccgtc agcctgctcg ccgtagccgt cgaagttgta ccgatgccag
     1801 aaggtgccgt tcggcgtgcc gaccccgagc tgtgcgtcga cgacgccgac cgtgttgagg
     1861 acgaccggat cgtcccaacg tttgatgcca agacgcacga gctcgaggta gctcgggtcc
     1921 acgacggcgc gctgatcgac gttgtccgga ccactgtcgc cgatgttgta ggtcgtcccc
     1981 gcgttcgggt tgccgtcctt ggtcag
//
LOCUS       DASVXZ010000259         1584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_655072, whole genome shotgun sequence.
ACCESSION   DASVXZ010000259 DASVXZ010000000
VERSION     DASVXZ010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_655072"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..499)
                     /locus_tag="VF788_05280"
     CDS             complement(<1..499)
                     /locus_tag="VF788_05280"
                     /inference="COORDINATES: protein motif:HMM:NF024932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8933596.1"
                     /translation="MERERSAAAAMLGLSGFVVLAVSEVDGELEQAIETTADLVGCPE
                     CGAVAMLHDRRPTWVRDLPAGGRPVTLVWTKRVWRCRYPACAKRTWTETSEVIAPRAS
                     LTERARAEICRRVGQDAASVAAVAREFGIGWRTAMTAVRDYGTPRVDDCDRLAGVQAL
                     GLDETA"
     gene            721..1488
                     /locus_tag="VF788_05285"
     CDS             721..1488
                     /locus_tag="VF788_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005450879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8933597.1"
                     /translation="MPGQATTGLTPEQFDELVNRVGQRLVWDCGQGRSKELTLRQAVK
                     AVVTYFRTNVTQEVIAELLFVDQSTISRTISDLEEIIAEALDEFVPELPEEIEGRVAM
                     VDGSLCPCWSWADAPELYSGKHKTTGHAHQFVCDLSGNLMHISDPLPGNTHDAKAMHQ
                     TGLNELLGYDNAIGDKGYIGTGITTPYRKPAGGELLDWQKEFNTSINKTRYVIERAIA
                     HFKTWQCMHTDYRRPQRTYVTAFNAVRALHFFKLRFA"
BASE COUNT          349 a          564 c          412 g          259 t
ORIGIN      
        1 acgctgtctc atccagccca agggcctgca caccggccag ccgatcgcag tcatcaaccc
       61 gcggtgtccc gtagtcgcgc accgcggtca tcgcggtgcg ccagccgatg ccgaactccc
      121 gagccaccgc cgccactgac gcggcgtcct gaccgacccg gcggcagatc tcggcgcggg
      181 cccgctcggt cagcgacgcc cgcggtgcga tcacctcgct ggtctctgtc caggtccgct
      241 tcgcacacgc cggatacctg catcgccaaa cccgcttggt ccacaccagc gtcaccgggc
      301 gtccaccggc aggcaggtcc cgcacccacg tcggacgccg atcatgcagc atggccaccg
      361 ccccacactc cgggcaaccc accagatcgg ccgtggtctc aatcgcctgc tctagctcgc
      421 cgtcgacctc cgacacggcc agcacaacaa acccggacaa gcccaacatc gccgctgcag
      481 cactacgctc tctttccacc tggggtctcc atctccgtgt ctgtgaacac cacggatcat
      541 gaggccccag gcccgtctcc ggacccaagc taaagatcgt gtcctacagc accgcaccac
      601 gcttaaagac gaagagcctt taaaggggtg aacatttcgg cgtgtcgtaa ccagtagggc
      661 aatggtccca acgggagaat ttgaaggcta cgccaatagt cttcacaccc ggagggacca
      721 ttgcccggcc aggctactac gggactcact cccgagcaat tcgacgagct cgtcaaccgt
      781 gtcggccagc gcctggtttg ggattgcgga cagggcaggt cgaaagaact gacgcttcgc
      841 caagcagtga aggcggtcgt gacctacttc cgcaccaacg tcacacagga agtgatcgcc
      901 gaactgctgt tcgttgatca atccacgatc tccagaacga tcagtgatct agaagaaatc
      961 atcgccgaag cgctcgacga gttcgtgccc gagttacccg aggagatcga gggccgagtc
     1021 gcaatggtcg atggatcgct gtgtccctgc tggtcctggg ccgatgcgcc cgagctgtac
     1081 tccggcaagc acaagaccac cggccacgcc catcagttcg tctgcgacct ctccgggaac
     1141 ctgatgcaca tctccgaccc actgcccggc aacacccacg acgcgaaggc catgcaccag
     1201 accggcctga acgaactcct cggctatgac aacgccatcg gtgacaaagg ctacatcgga
     1261 accggcatca ccaccccgta ccgcaaacca gccggaggag agctcctcga ctggcaaaaa
     1321 gagttcaaca cctcaatcaa taagactcgc tacgtcatcg aacgcgcgat cgcccatttc
     1381 aagacttggc agtgcatgca caccgactac cgcagacctc aacgcaccta cgtcacagcc
     1441 ttcaacgccg tccgagcact ccacttcttc aaactgcgtt ttgcataagc ctctgtatat
     1501 cccgaaagac tggttcaccg atcgacagcg gtgccggaca gcgggaattc ccgatgaggt
     1561 ggaattcgcc accaagccgg atct
//
LOCUS       DASVXZ010000260         1657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_999849, whole genome shotgun sequence.
ACCESSION   DASVXZ010000260 DASVXZ010000000
VERSION     DASVXZ010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_999849"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1256)
                     /locus_tag="VF788_05290"
     CDS             complement(<1..1256)
                     /locus_tag="VF788_05290"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEX8933598.1"
                     /translation="MHGFVGQATFGDGIAAPEGPAGGVALWAGRVSLWVPDKSWHHAQ
                     VRCFAQSGTKLAVFGTCLSSEPAVLAVLARCQADGDYAELAGLPGSFAFVVHNGDRLH
                     LFTDAVGLRSVYYRLHGLVVRFAESSLDLADPSRDLDRAWVATQLMVRIPSLAEQRTP
                     FAEVAEVPSGHCLTVQIPRFLGEEPVARCRPYWAVPAGRKNLSEGAQSLRQALVDAVT
                     SRVELASPTSGDLSGGLDSTSLVALAARAVPDRALVTVTMAGVDAQTKDDLDFALRAS
                     LALPNIISHQVHTEMTCVDGREISGLAPTMEPNMGTTMYPGFKARMQAVAASGSALHL
                     SGQAGDAVLMAPGAYLADLIAAKRFSEFSRHLDRLARQCDLSPARLVRLAYRLSRTRY
                     GRWIDQQAELLARVGDQSDTQDFAIA"
BASE COUNT          353 a          535 c          496 g          273 t
ORIGIN      
        1 caggcgatag caaagtcttg cgtgtcagac tggtcgccga cccgagcgag cagttcggcc
       61 tgctggtcga tccaccgccc gtatcgcgtg cggcttaagc gatacgccaa ccggaccagt
      121 cgcgccggtg aaagatcgca ctgtcgagcc agccggtcca gatgacggct gaattcagaa
      181 aaccttttgg ctgcgatcaa gtcggccaga tacgcgcctg gcgccatcag cacagcgtca
      241 ccagcctgcc cggaaagatg caacgctgaa ccagacgccg ccaccgcctg catccgggcc
      301 ttgaagcctg gatacatggt ggtgcccatg ttcggttcca tggtcggcgc caaaccactg
      361 atttcccgac cgtcgacaca ggtcatttcg gtgtgtacct gatgggagat gatgttcggc
      421 aaggccagcg acgcacgcag ggcgaagtca aggtcgtcct tggtctgggc atcgacaccg
      481 gccatcgtga cagtgacgag agcacggtcc gggaccgccc tggccgcgag cgcgacaagc
      541 gaggttgaat cgagtccccc actgagatca cccgaggtag gcgacgcaag ctcgactctg
      601 ctcgtcaccg cgtcgacaag ggcctggcgc agcgactgcg ctccttcgga aagattcttg
      661 cgcccggccg gaacagccca gtacggccgg caccgcgcca cgggctcctc gccaagaaag
      721 cggggaatct gcaccgtgag gcagtggcca gagggaactt ccgctacctc cgcgaaaggt
      781 gtcctctgct cggcaaggct ggggattcgg accatgagct gggtggctac ccaggcccga
      841 tcgagatctc gggaaggatc ggctagatca agactggact cagcaaaccg cactaccaag
      901 ccatgcagac ggtagtacac ggaacgcagg ccgacagcgt ccgtgaacag atggagccgg
      961 tctccgttgt gtacgacaaa ggcaaagctg cccggcaagc cagccaattc ggcgtagtcg
     1021 ccgtcagcct ggcagcgggc gagtacggcg agcaccgcgg gttctgaact cagacaggtg
     1081 ccgaagacag ccaacttggt gccggactgt gcaaagcagc ggacttgggc gtgatgccag
     1141 ctcttatccg gtacccacaa actgactcgg ccggcccaga gcgccacacc gcccgcaggt
     1201 ccctccggtg cggcaatgcc gtcaccgaag gttgcttgcc cgacgaagcc atgcatcagc
     1261 gacgctttcg gcgcactgtc ctacacacct tcggactgga catccttaaa ggttccgccg
     1321 ggtccgtcca aattcggtcc aacgcctcct agagcgagtt tgacgacgtc gcccactgtc
     1381 tcgaccctca ggagcggtga ttcgtccgag gcgacgccct cggcaatttc gtctgagctg
     1441 ccgctgccgc cgcggaacca acggatgttg aacacaagaa ccccttcccc gatagggttg
     1501 atttgctaaa gagaacaaat actccaccca gtcccatcca ttctagcgaa catcgctcag
     1561 atctgaacca cctcgggttt gccaccagga gccggagcaa gccgcgatca ccacggtctc
     1621 cacgcggttg ggatgagcgc aaagacgctg cacagtg
//
LOCUS       DASVXZ010000261         6342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_207527, whole genome shotgun sequence.
ACCESSION   DASVXZ010000261 DASVXZ010000000
VERSION     DASVXZ010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6342
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207527"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VF788_05295"
     CDS             complement(<1..258)
                     /locus_tag="VF788_05295"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX8933599.1"
                     /translation="MNYPDGDLCGQLAHAGTEAVRAGLVIGSGGNLSARAPGSDRCWI
                     TAAGSWLDRLGAAEFSLISIPGGELLEGQPPSSEWRLHTETY"
     gene            604..1107
                     /locus_tag="VF788_05300"
     CDS             604..1107
                     /locus_tag="VF788_05300"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX8933600.1"
                     /translation="MLNHSGGARGLGRIGLCFAFVSSFVVLAGSTSASAHEVSQAYQD
                     RDGKFAIQLSGREVPEGGDPDGKGSAQLTLNTQQQTACFTINWKGLKGEVTALHLHVA
                     ASGSEGPHWIDFFNGQHLPGAQGESSGCVPTTQDKIRAVIDNPSGYYLNAHSSEFPKG
                     AIRGQLS"
     gene            complement(1756..2127)
                     /locus_tag="VF788_05305"
     CDS             complement(1756..2127)
                     /locus_tag="VF788_05305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933601.1"
                     /translation="MRSGVQVQIELRRVVQDLIDLIPAAINAVGDPVAISIEMPVVEE
                     VNPMPAILVTRGVVQMESGHVTREPIPLDVVADPLMFSVKIKTGDAPTVMISTILELI
                     TAQLNQELPMVLVVRSGDFLR"
     gene            2397..4184
                     /locus_tag="VF788_05310"
     CDS             2397..4184
                     /locus_tag="VF788_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8933602.1"
                     /translation="MGYWLGIDAGSTFTAAAVCRKDGERWGPPEVVALGARSAAVSSV
                     VYLDEGGQVVVGEAAERRVVTDPDRVVRGFKRRIGDEVPIVICGVAYAAPEIAAMMIR
                     WVVEQVAAREGGPAAGIVLTHPAAWGSYKVEVLARALGAAGLPQIRFCTEPEAAAAGY
                     AMQERIEPGSTVAVYDLGGGTFDAAVVRKTGAGGFCVLGQPQGLEQLGGVDFDDAVFG
                     HVLAAVPALAELDTEDPGVLAATAALRRECIDAKEALSADTEVTIPVLAPGIQSQIRL
                     VRAEFEDMIRAQVGETVQALRRTLESAQLEPEELDVVLLVGGSSRVPLVAQLVSAELG
                     RPVAVDADPKAAIALGAALLAAPDVSTTSDPPDHELSTESPAQLTGANLPIPSPVHAP
                     ERPTLLASPGVEPAGSGQRGNNPRRAKQVAFAAVLALGTAAGVVSVPFLIAHSEPNPS
                     RIAGTVSSSTPPPPRTGEGALVGPNAAAPPAASADTTGTTGSGNSSRAGSNGSVRTTL
                     PAAPAQPAGGVAKPNPAGDSTRATAPSWVTSHTWTTSWSSPPPTTPRASVPATTPHPT
                     SKPPSSAPPATTKGVPPSTPPTATPSPRR"
     gene            complement(4229..>6342)
                     /gene="cofH"
                     /locus_tag="VF788_05315"
     CDS             complement(4229..>6342)
                     /gene="cofH"
                     /locus_tag="VF788_05315"
                     /EC_number="2.5.1.147"
                     /inference="COORDINATES: protein motif:HMM:TIGR03551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="5-amino-6-(D-ribitylamino)uracil--L-tyrosine
                     4-hydroxyphenyl transferase CofH"
                     /protein_id="HEX8933603.1"
                     /translation="ERPELRYPSARSWLTEHGYGSTVEYLVAACRAVLEQTGLLPHAN
                     AGALHRDELAALREVTASQGMMIESLRPDLVAHRGAPDKHPDRRLASLHAAGALAIPF
                     TTGILVGIGETEEDRVVALEAIAQAHRRYGHVQEVIVQNFLPKPGTAMRQIPPCPPSE
                     HLRAIALARLVLPPEVHVQAPPNLTDNPGELLAAGIDDWGGVSPCTADHVNPERPWPA
                     LDELRNVTETAGHTLAPRLTIYPEYARQPQCWLDEAVRFGVLDRSDAEALGRDDPGAV
                     LPECAQQAVNVGDGAEVTLAGRRSTAWYSGTGVSPPELLPAPARATGAVREILDGVRD
                     GQTPGLDELVTLLRSRGPEVAAVAGLADELRAAVAGDTVTFVVNRNINYTNVCTFRCR
                     FCGFSKGKLSLNLRGAPYLLELPEIVMRVMEAQRCGATEVCLQGGIHPSFDGEYYLKV
                     CRAIHEAAPEIHIHGFTALEVTEGARRLHEPLADYLTRLRQAGLRSLPGTAAEILDDE
                     IRAVLCPDKITTAEWLEAHRVAHSVGLRSNVTMMFGAIEQPVHWARHLLRARDLQKQT
                     GGFTEFVGLPFVHMATPMYLKRAARRGPTWREVLLVHAVARIALHGLIDHVQASWVKL
                     GGSAARQLLQAGVDDLGGTLMDENISRAAGASHGQCLDEAGFRAIVEPLGRTLAQRTT
                     LYERMTLSQPGDASPAGRTAM"
BASE COUNT         1099 a         2046 c         2090 g         1107 t
ORIGIN      
        1 ataggtctcg gtgtgcagcc gccactcact ggatgggggc tgcccctcga gcaactcacc
       61 ccccggaatg ctgatcagcg agaactcggc ggcccccaac cggtcgagcc agctgcccgc
      121 ggcggtgatc cagcaccggt cagatcccgg cgctcgcgcc gacaggttgc cccctgatcc
      181 gatcaccagc ccggcacgga cagcttccgt gccggcgtgc gcgagctggc cgcacagatc
      241 accgtccggg tagttcacga cctcgagcct agccagcgcc actgggcatg gttcgcatcc
      301 gccacctaca gtgacaaggt atccacaata taactccagt ggatagtaaa ttgttgcctc
      361 gcacgaggtg tcactggcta atttgcgcac ggagagccag cggcaaactg tgaaggtagc
      421 ccgtctgcgt tgagcgtctt cgactatgct gaggagaccg ggggccaagc agccaattct
      481 tcggtggtct cagctgcgcg gacaatcctg accgtttcgt ggttcggttg ggttatccgg
      541 ttgcactgtc gatttctgag agggaacgcg agaatggccg acagcgacaa gaaaggtccc
      601 atcatgctga accacagcgg aggagcccgg ggactgggcc ggattgggct gtgtttcgca
      661 ttcgtctcat cattcgtagt cctcgctggg tcaacctcgg cgtcggcaca cgaggtcagc
      721 caggcgtacc aggatcggga cggcaagttc gctatccagt tgagcggcag agaagtaccc
      781 gagggcggtg acccagacgg gaagggttcg gcccagctca ccctcaacac gcagcagcag
      841 acggcctgct tcacgatcaa ttggaaaggg ctcaaaggtg aggttaccgc tcttcacctt
      901 cacgtggccg ccagcggcag cgagggtccg cattggattg atttcttcaa cggccagcat
      961 ctgcccggcg ctcaaggcga gtcttcgggt tgtgtcccca ccacccaaga caagattcgt
     1021 gcggtcatcg acaatccgtc gggttactat ctcaatgccc actcgtcgga gttccccaag
     1081 ggagctatcc gcggacagct gagttagtag cggtgggcac gcccttgact gtctgagagc
     1141 cggtcaaggg cgtgcccgcg tggtggcgct ctggagagcc acctaggtat gaggtccgag
     1201 ccgtgctccc ttcgaagtgg tggcggtgct cgcgatgcgc cacggacatg actgccccct
     1261 cggaggtagc caccgagtcc gtcacttagc gtaatctgtt acccagagta gcaggccgct
     1321 cacatagttg cccttatggt gttggcaact ttcaaggctc gttcggaatc gaactcgtct
     1381 tgttacgcgt ggcgaggagc agctcgccgt gaatggcccc ggtcggggcg taacgccgtc
     1441 ccaccgaatg acgacagaca gattgacaat ttgccattcg tgctggagtg gtcggagctg
     1501 agttgaaccg ttcggagacg actggtccgt tgagatttcc ggttccggct cgtcttcttg
     1561 tgcacgtttg cctggcaact cacagaagca tcgggttcat gccgcgtacc ttcgcgggaa
     1621 gccgggaatg cccaaacaag gacgagaaag gtcccataga tgcagcacag cacaggaatc
     1681 cggaaaatgg ggagggttgg agcgtgcctg gcgttcgggt cgtcgatcct gctgtttgcc
     1741 gggcctgccg cagcgtcagc gcaggaaatc accactgcgt accaccaaga ccataggcag
     1801 ttcttggttg agttgagcgg tgatgagctc caggatggtg gagatcatca cggtcggggc
     1861 gtcgccggtc ttgattttga cgctgaacat gagagggtct gctactacat ccagtgggat
     1921 gggctcgcgg gtgacgtgac cgctttccat ctgcaccacg cccctcgtca ccaggatggc
     1981 gggcattgga ttgacttctt caacgacagg catttcgatg gagatcgcaa caggatcgcc
     2041 gactgcgttt atagcagccg ggataagatc gatgaggtcc tggacgaccc gtctgagttc
     2101 tatctgaacc tgcacaccac tgcgcacaag gatggagcaa tccgcggcca gctcgactga
     2161 aacgtgagag cgcggggtgg accgaacccg ccccgcgctc tcacgtcgag ccgcaccggg
     2221 ttgcgcagtc ctgcgttaga agagtgacag cgcgccaact ggtcatccca catgatcact
     2281 cgctgtactg ctcaccgagc atgctgtgtt ggcgatacgc tgccaggccc gttcagcttg
     2341 gctcacgctc tgagctaggt gtctgtgggc gcggggacga ggagggcacg cggaggatgg
     2401 gctactggct cgggattgac gcgggtagca cgttcacggc ggcggcggtg tgccggaaag
     2461 acggtgagcg gtgggggccg cccgaggtcg tggcgctggg ggcccgctcg gctgcggtga
     2521 gttcagtggt gtacctggat gagggcggcc aggtggtggt gggggaggcc gccgagcgcc
     2581 gcgtggtcac cgaccctgat cgggtggttc gcgggttcaa gcgtcgcatt ggtgatgagg
     2641 tcccgatcgt catctgtggt gtggcttatg ccgctccaga gatcgccgcc atgatgattc
     2701 ggtgggtcgt cgagcaggtc gctgcccgtg agggtggtcc ggcggcgggg attgtgctca
     2761 cccacccggc tgcatggggt agctacaagg ttgaggtcct ggcacgggcg ctgggtgcag
     2821 ctggtctacc tcagatcagg ttctgcaccg agccggaagc ggccgcggcg ggctatgcga
     2881 tgcaggagcg gatcgagccc ggcagcacgg tagccgtcta cgacctgggc ggaggcacct
     2941 tcgatgcggc ggtggtccgt aagaccggtg cgggcgggtt ctgcgtgctg ggccagcccc
     3001 aaggcctcga gcaactaggc ggggtggact tcgacgacgc ggtgttcggc catgtgctgg
     3061 ccgcggttcc ggctctggcc gagctggata ccgaggatcc cggtgtactg gccgccactg
     3121 cagcgctgcg gcgagagtgc atcgatgcga aagaggcgct gtcggcagat accgaggtga
     3181 cgatcccggt cctcgctccc gggatccagt cccagatacg gctggtccgc gccgagtttg
     3241 aagacatgat tcgtgctcaa gtcggcgaaa ctgtgcaagc gctgcgccgc accctggaat
     3301 ccgctcagct cgaacctgag gagctggatg tggtgctgct ggttggcggt tcctcccggg
     3361 tgccgctggt cgcgcagctc gtctctgctg agctgggccg ccccgtcgcc gttgacgccg
     3421 atcctaaggc cgcgatcgcc ctgggcgccg cgttgctcgc cgccccggat gtatccacca
     3481 caagcgatcc accggatcac gaactttcca ccgagtcccc agcgcagctc accggggcga
     3541 acctgccaat tcctagcccg gtgcacgcgc ccgaacgacc aacgctgctc gcctctcccg
     3601 gtgttgaacc agctgggagc ggacagcgcg gaaacaatcc ccggcgagcg aaacaagttg
     3661 ctttcgccgc cgtgctggca ctcggcaccg cggcaggagt ggtatcagtg ccattcttga
     3721 tcgcccacag cgaaccgaat ccctcgagaa tcgccggaac tgtgtcgtcc agcaccccgc
     3781 caccgcctag gacgggggag ggcgctctcg tcggtcccaa tgcggcggcc ccaccggcag
     3841 cgagtgcaga cacgacaggg acgaccggca gcggaaactc gtccagagcc ggctccaacg
     3901 ggtccgtccg cacgacactc ccggccgcac cggcgcagcc tgccggtgga gtcgccaaac
     3961 cgaatcccgc gggcgactcc acccgggcga cggcgcccag ctgggtcacc agccacacct
     4021 ggacaaccag ctggtcgagc ccccctccga ccacaccccg ggcttcggtc ccggccacga
     4081 cacctcatcc aaccagcaag ccaccgtcct cagcgccccc cgccacgact aagggagtcc
     4141 cgccttccac gcctcccacg gccacaccgt ccccccgtcg ctaaccaagc cgggtgagat
     4201 accacgctgt ggcaggtctc atcgagcgct acatggccgt gcgcccagcg ggcgaagcgt
     4261 cgccgggctg gctgagcgtc atccgctcgt agagggtggt gcgctgggcc agcgtccggc
     4321 ctagcggttc gacgatggca cggaagccgg cctcatcaag gcactgccca tggctggcac
     4381 ccgccgcccg gctgatgttc tcatccatca gcgtgccacc gaggtcgtcg acgccggctt
     4441 gcagcagctg gcgagcagcg gagccgccga gtttgaccca agaggcctgc acgtggtcaa
     4501 tcaacccgtg caaggcgatc cgggcgacgg cgtgcaccag cagcacctcg cgccaggtcg
     4561 ggcccctccg ggcggcccgc ttgaggtaca tcggagtggc catgtgtacg aagggcagcc
     4621 cgacgaactc ggtgaacccc cccgtctgtt tctgcaagtc acgcgcgcgc aacaggtgcc
     4681 gggcccagtg cacgggttgc tcgatcgcgc cgaacatcat cgtcacgttg gagcgcagtc
     4741 ccaccgagtg cgccacccgg tgggcctcca gccactccgc agtggtgatc ttgtcagggc
     4801 acagcaccgc gcggatttca tcgtcgagga tctccgcggc ggtgccaggc agagaccgta
     4861 ggcctgcttg acgaagccgg gtcaaatagt cggcaagcgg ctcatgcagc cgccgggcac
     4921 cttcggtgac ctcgagtgcg gtgaatccgt ggatgtggat ttcgggtgca gcctcgtgaa
     4981 tggccctaca gaccttcagg tagtactcac cgtcgaagct gggatggatc ccgccctgca
     5041 ggcagacctc ggtggccccg caccgctgag cctccattac ccgcatcacg atttcgggaa
     5101 gctccagcaa gtacggcgcg ccgcgcaggt tcagcgacag cttgccctta gaaaacccgc
     5161 agaagcggca ccggaaagtg cacacattgg tgtaattgat gttgcgattg accacaaagg
     5221 tgacggtgtc accagcgact gccgcccgca gctcatcggc cagccccgct acggcggcga
     5281 cctcgggacc acgggatcgc agcaacgtca ccagctcgtc gagccctggt gtttggccgt
     5341 ctcggacgcc gtcgaggatc tcgcgcaccg cgccggttgc ccgtgccggc gcgggcaaca
     5401 attctggggg cgagacgccg gtgccggagt accaagctgt ggagcggcgt ccggccagcg
     5461 tcacctctgc accatcgcca acattgacgg cctgctgcgc gcactcgggc aataccgcgc
     5521 ccggatcgtc ccggccgagt gcctcggcgt cggagcgatc cagcaccccg aagcgcacag
     5581 cttcgtccag ccaacactgt ggttgccggg cgtactccgg gtagatggtc agccgtggtg
     5641 ccagggtgtg gcccgctgtc tcagtcacgt tgcgcagctc gtccagcgcg ggccacggcc
     5701 gttccggatt gacgtggtcc gcggtgcagg gcgacacccc gccccagtcg tcgataccgg
     5761 cggcgagtaa ttcacctgga ttgtcggtga ggttgggggg cgcttgcaca tgtacctcgg
     5821 gtggcagcac caaccgggcc agcgcgatcg cccgcaggtg ctccgacggt gggcagggtg
     5881 ggatctgccg catcgcggtg cctggcttgg gcaggaagtt ctgcacgatc acttcctgca
     5941 cgtgcccata ccggcggtgt gcctgggcga tcgcttccag tgccaccacc cggtcttcct
     6001 cggtctcacc gatgccgacc aggatcccgg tggtaaacgg gatcgccagg gcccccgcgg
     6061 catgcaggct ggcaaggcgc cggtctgggt gcttgtcggg ggcgccccga tgcgccacca
     6121 aatcgggccg taatgattcg atcatcatcc cctggctggc ggtcacctcg cgcaacgcgg
     6181 ccagttcgtc gcggtgcagc gcaccggcgt tggcgtgtgg cagcagcccg gtctgctcaa
     6241 gcaccgcacg gcacgccgcc acgaggtact ccaccgtgga gccgtacccg tgctcggtca
     6301 gccagctccg ggccgacggg tagcgcagtt ctggacgctc gc
//
LOCUS       DASVXZ010000262         6045 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_999997, whole genome shotgun sequence.
ACCESSION   DASVXZ010000262 DASVXZ010000000
VERSION     DASVXZ010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6045
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_999997"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VF788_05320"
     CDS             complement(<1..551)
                     /locus_tag="VF788_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX8933604.1"
                     /translation="MDLRADRGRVAGLAVEVQGQLLRGQPLGVEDEKSEQLHAPCGQR
                     QRAPVEARGRVAARQTFTEVARGTADDVERALDAAHGAAPAWGKTSVAARADILNKIA
                     DRIEANLEKLAVADSWDNGKPIRETLAADLPLIVDHWRYFAGAIRAQEGGLSELDTDT
                     VAYHFHEPIGVVGQIIPWNFPLL"
     gene            568..906
                     /locus_tag="VF788_05325"
     CDS             568..906
                     /locus_tag="VF788_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933605.1"
                     /translation="MDGVVRTKPYRLRAEVDADLNTVRAALHSGHLDVATRLCRGVLL
                     PQSESPTLRAEWDELLVALRHAMLNRGEIGPLWSFGEAEYGRDDLEVFERLVELLPGS
                     DPRHTLAAAH"
     gene            966..2003
                     /locus_tag="VF788_05330"
     CDS             966..2003
                     /locus_tag="VF788_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEX8933606.1"
                     /translation="MPGRPGVPEVTEVPEPEPGEHDLLVEGLAVGVCGTDREIAAGDY
                     GWAPPGHEWLILGHESFGRVHTAPAGSGFAAGDLVAGVVRRPDPVPCGACAHGEFDMC
                     RNGRYTERGIKELDGYASQRWRVEAGYAVPLDPRLTEVGVLMEPTSVVAKAWEQIEQV
                     GRRSWFAPQRVLVTGAGPIGLLAALLGLQRGLDVHVLDVVSSGPKPDLVRALGATYHH
                     DGVASATGAAAPDVIIEATGVSSVVFDAIGATAPYGIVCLTGVSSVGKGITVDGGALN
                     RELVLENDVVLGSVNANLHHYALAATALARADLDWLDRLITRRVPLKRAADAFETQPD
                     DVKVVITLDVG"
     gene            complement(2026..2772)
                     /locus_tag="VF788_05335"
     CDS             complement(2026..2772)
                     /locus_tag="VF788_05335"
                     /inference="COORDINATES: protein motif:HMM:NF020906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1990 family protein"
                     /protein_id="HEX8933607.1"
                     /translation="MRERLLGSIDAAAALHDLRWRRINYDPTAAPLDGQPEGHWHIDS
                     GDTVIGHETPGPPVPGGAWECACLLVRHYEFTDPRILRAVYRYDDELLGRDMLLEGRF
                     FGLRFYLGVRVTKVIDETRGCGTGAERVWGWSYQTLQGHLEQGRLNYEVIKNLASGEV
                     TFRVSGYSRRAPVPDPVIRWGFRIFGRWTQERFYRAVQRRLRHLMQSAQRGEPPPSPT
                     VRADGLALAPSRATPHPLERLTRGSQHPGS"
     gene            complement(2773..2988)
                     /locus_tag="VF788_05340"
     CDS             complement(2773..2988)
                     /locus_tag="VF788_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933608.1"
                     /translation="MTVVGAVRRLGLRSTHLHLASLGSVGLCVVLWIRAKTIDQDERG
                     NAERRALFVGLWPPTLWLIGDSLRKPE"
     gene            3053..3835
                     /locus_tag="VF788_05345"
     CDS             3053..3835
                     /locus_tag="VF788_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010226275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1990 family protein"
                     /protein_id="HEX8933609.1"
                     /translation="MTTASRTARLATVLQWPLAIALVSWRYMWRTTPLHRSDEEGSVA
                     DLPSRWDADNGLGERGQGIAAGVGPLLRRCYSVRIVDSPMDPATLMKAVAANLNRASP
                     EMAVFRKTRGAPGPIRHGDEIVVRMPGPWDGPVRVVSQDATSFRLATLDGHLEAGQIE
                     FRAAQDGDALRFEIESWARAGDRLSHLLYNRLRLAKEIQLNMWSHLCVRAAALAGGRP
                     RGGVTIHTRRLDWPPPESANQSGQAPLQPENKIHSARPSRHA"
     gene            3912..4352
                     /locus_tag="VF788_05350"
     CDS             3912..4352
                     /locus_tag="VF788_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020647011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933610.1"
                     /translation="MPRRHSSMPNAPGFYPFAFAPWFGLVLRVIGVRPDSSGLRVHDG
                     KLDVWFGPWRLVTPLSNVSGAELSGPYQAWKVLGVRLSLADRGLTFGTNAAAGACIRF
                     HRPVPGIEPTGLLRHPALTITVAEPELLVERLRRQLGTGVSAKE"
     gene            4349..5245
                     /locus_tag="VF788_05355"
     CDS             4349..5245
                     /locus_tag="VF788_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX8933611.1"
                     /translation="MKVLVAGSSGFVGRRLCPALEQAGHAVRAMTRRPESYRGAGEAV
                     RGDVHDAGSLSAALAGSDAAYYLVHSLDNADFERRDAEAARTFASAAAEAGLRRIVYL
                     GGLGDDADELSAHLRSRREVEKLLGADGVPVTTLRAGIIVGHGGISWEMTRQLVEHLP
                     IMITPQWVQTRTQPIAVADVVRYLVGVLEVPEAAARAFDIGGPEVLAYIDMMRRVATI
                     QGRPLLVLPVPLLSPHLSSLWLSLVTDVDVQTGRSLIDSMINEVVVREDSIRRLVPFE
                     PMDYDDAVLQALGERAKVKRAS"
     gene            5242..5985
                     /locus_tag="VF788_05360"
     CDS             5242..5985
                     /locus_tag="VF788_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEX8933612.1"
                     /translation="MKGIPWDRGESDTVQPRRRRVVAGVSLVGAALLGTSLSTKPGSP
                     QFYGLTLGVAATWTVGGLGSGPLHLGWVQRSGDYPLRRPVLTPVLTGVGAFAVFYAGA
                     LAARRIPVLNTAISHVLRYAHQGSGPLVMLTTLANGAAEEVFFRGALYAAIGGKHPVA
                     LSTAVYSLATIPTRNPALVLASAAMGALFGLQRRATGGIQAPILTHLTWSTLMVRFLP
                     PLFSAAPAAGHLSTGVRRRVERRLTRRQR"
BASE COUNT          925 a         2028 c         2080 g         1012 t
ORIGIN      
        1 atgagcagcg ggaagttcca cgggatgatc tgcccgacca cgccgatcgg ttcgtggaag
       61 tggtaggcga cggtgtcggt gtcgagctcc gagaggccgc cctcctgcgc tcggatggcc
      121 ccggcgaaat aacgccagtg gtccacgatt agcggcaggt cggcggccag cgtctcgcgg
      181 atcggcttcc cgttgtccca gctgtccgcg acggcgagct tctcgaggtt cgcctcaatc
      241 cggtcggcga tcttgttcag tatgtcggcg cgtgcggcga cggaggtctt gccccaagcg
      301 ggtgcggctc catgggccgc gtccagggct cgctccacgt cgtcggcggt gccgcgagcg
      361 acctcggtga acgtctgcct ggcagccacc cgaccgcgag cctcgacggg cgcccgctgg
      421 cgctgaccac acggcgcgtg gagctgctcg ctcttctcgt cctccacccc gaggggctga
      481 ccgcggagca attggccctg cacctctacg gcgaggccgg caacccgacc acgatccgcg
      541 cggagatcca cccggctacg cagccggatg gacggtgtcg tacggaccaa gccataccgg
      601 ctgcgcgcgg aggtcgacgc cgatctcaac acagtgcgag ccgcgctgca ttcaggtcac
      661 ctggacgtgg cgacgcgatt gtgccggggc gtgttgctgc cgcaatcaga atcgccgaca
      721 ctgcgtgctg aatgggacga actgctggtg gcactgcggc acgcaatgtt gaatcgaggc
      781 gagatcggac cgctgtggtc cttcggcgag gctgagtacg ggcgggatga cctggaggtg
      841 ttcgagcggc tggtcgaatt gctgcccggt agcgacccgc ggcataccct ggcagccgcg
      901 cactgagcgc ggctgcgggc gggatgatga gatgaggggg gcagggcatc aaagcgctga
      961 ccgttgtgcc gggccggccc ggcgtgccgg aggtcaccga ggtacccgag cctgagcccg
     1021 gcgagcacga cctgctcgtc gagggcctgg cagtcggggt gtgcggtact gaccgggaga
     1081 tcgctgcggg ggactacggt tgggcacctc cgggtcacga gtggctaatt ctgggtcacg
     1141 agtcgtttgg ccgggtgcat accgcaccgg ccggctcggg cttcgcggcg ggggacctgg
     1201 tagccggcgt cgtgcgcagg cccgacccgg tgccgtgcgg cgcgtgcgcg cacggcgagt
     1261 tcgatatgtg ccgtaacggc cgctacaccg agcgcggcat caaggagctc gacggctatg
     1321 ccagccagcg ctggcgcgtc gaggcgggct atgcggtgcc ccttgaccca cgcctgactg
     1381 aagtcggtgt gctcatggag ccgaccagcg tcgtcgccaa ggcgtgggag cagatcgagc
     1441 aggtgggccg gcgatcatgg tttgcccccc aacgggttct ggtgaccggt gcgggaccga
     1501 tcggcctgct cgccgcgctg ctcgggctgc agcgcggcct ggacgtgcat gtactcgacg
     1561 tggtgagctc gggccccaag cccgatctgg tgcgcgcgct cggcgcgacc taccaccacg
     1621 acggcgtggc ctcggctacc ggcgcggccg cccctgatgt gatcatcgag gccacggggg
     1681 tatcctccgt ggttttcgac gccatcgggg ccaccgcgcc ctatggcatc gtgtgcctca
     1741 ccggggtttc ctccgtgggt aagggcatca ctgtcgacgg cggcgctctc aaccgggaac
     1801 tcgtgctgga gaacgacgtg gtcctcggat cggtcaacgc gaacctgcat cactatgctc
     1861 tggccgccac cgccctggct cgcgctgatc tcgattggct ggaccgcctg atcacccggc
     1921 gggtcccgct caagcgcgcc gctgatgcgt tcgaaacgca gcccgacgac gtcaaggtcg
     1981 tcatcacgct ggacgtgggc tagcgacatc ggcttggtgt cctgactagc ttcccgggtg
     2041 ctgcgagccg cgggtgagcc gttccagcgg atgtggtgtg gctctggacg gggcgagcgc
     2101 gaggccgtct gcacgcactg tcggtgacgg tggcggttca ccgcgctgtg cggactgcat
     2161 cagatgacgc agtcgccgct gaacagcgcg gtagaagcgt tcctgggtcc accggccgaa
     2221 tatccgaaat ccccaccgga tcaccgggtc tgggacgggc gcgcgccggg agtagccact
     2281 gactctgaat gtgacctcgc ccgacgccag gtttttgatc acctcataat tgagccgccc
     2341 ctgttccaga tggccctgga gcgtttggta gctccagccc caaacccgct cggctccggt
     2401 tccgcagccc cgggtttcat cgatcacctt ggtgacccgt accccgagat agaaccgcag
     2461 cccgaagaac cggccttcca gcagcatgtc acgaccgagc agttcgtcgt cgtagcggta
     2521 caccgcccgg aggatgcgcg ggtcggtgaa ttcgtagtgc cgcaccagca ggcatgcgca
     2581 ttcccaggcc cctccgggca ctggcgggcc gggcgtctcg tgcccgatca ccgtgtcgcc
     2641 ggagtcgatg tgccagtgcc cctccggctg gccgtccagt ggcgccgccg tcgggtcgta
     2701 gttgatccgg cgccagcgaa ggtcgtgcag cgcagctgcg gcatcgatcg aaccgagtag
     2761 ccgctcgcgc acctactcag gcttccgcag ggagtcaccg ataagccaca gcgtgggtgg
     2821 ccagagcccg acgaacagtg cacgccgttc agcgttgccg cgttcatcct gatcgatggt
     2881 cttggcgcgg atccacagaa caacgcacag cccgaccgag cccagcgagg caaggtgcag
     2941 gtgtgtgctg cgcaacccga ggcgccgaac ggctccgacg acggtcaccc gacacctccc
     3001 gatagcacat cgacgacgag cggtagcccc gcttgcatgg tgtcatacag ctatgacgac
     3061 tgcgagccgt acggctcggc tggccactgt cctgcaatgg ccgctggcca tcgcactggt
     3121 cagctggcgc tatatgtggc gaactacgcc gctgcaccgc agcgacgagg aaggcagcgt
     3181 cgcggatctc ccgtcacgct gggacgccga caacgggctc ggcgagcgcg gccaggggat
     3241 tgcagccggc gtcgggcccc tgttgcgccg ctgctacagc gtccggatcg tggacagccc
     3301 gatggacccc gccacgctga tgaaggcggt cgccgccaac ctcaaccgcg cctcacccga
     3361 gatggcggtg ttccgcaaga cccgcggcgc gcctggtccg atacgacacg gcgacgagat
     3421 tgtcgtgcgc atgccaggac cgtgggatgg tccggtgcgc gtggtgagcc aggacgccac
     3481 ctcgttccgg cttgccacct tggacggtca tctggaggca ggacagattg agttccgggc
     3541 agcgcaggac ggtgacgcgc tgcggttcga gatcgagtcc tgggcccgag ccggtgatcg
     3601 gctgtctcac ctgctttaca accggctaag gctggccaag gagatccagc tgaacatgtg
     3661 gtcgcacttg tgcgtccgcg ccgccgcact cgccggcgga cgccctcgag gcggcgtcac
     3721 catccacacc cgacgactcg actggccccc accggaaagt gcgaaccagt ccgggcaggc
     3781 gcctctccag ccagaaaaca agatccactc agcgcggccg agcaggcatg cgtaggctgc
     3841 tcttgcggcc tcaggcctcg gctgtgaggt gaaaatttgc ccgcatgcac gatcgacgag
     3901 gggagtggat tgtgccgcgc cggcatagtt caatgcccaa cgctcccggc ttctacccgt
     3961 ttgccttcgc gccctggttc ggcctcgtac tccgagtgat cggggtccgg ccggattcaa
     4021 gcggcctcag ggtgcacgat ggcaagctgg acgtctggtt cggtccttgg cgactcgtca
     4081 caccgctcag caacgtcagc ggagccgagc tcagtggccc atatcaggcg tggaaggtgc
     4141 tcggagtacg cctttcactg gccgaccggg gactgacctt cggtaccaac gccgccgcag
     4201 gagcctgcat ccggtttcac cgaccggtgc cggggatcga accgactggg ctgctgcgcc
     4261 accccgcgct gactatcacc gtcgccgagc ccgagctgct cgtcgagcga ctacgccgcc
     4321 agctaggaac cggggtatcg gctaaggaat gaaggtactg gtcgcgggct cgtccggatt
     4381 tgtcggccgg cggctgtgtc ccgctttgga gcaggccggt cacgcggtgc gggcgatgac
     4441 tcggcgtccc gagtcctacc gcggcgcggg ggaggccgtg cgcggtgacg tgcacgacgc
     4501 cggatcgctg agcgccgctc tggccggcag cgatgccgct tactacctcg tgcattccct
     4561 cgacaacgct gacttcgagc ggcgcgacgc cgaggcggcg cggaccttcg ccagcgccgc
     4621 ggccgaagca gggctgcgcc ggatcgtcta cctcgggggc ctcggcgatg acgccgatga
     4681 gctgtccgcg cacctgcgca gccgccgtga ggtggagaaa ctgctcggag ccgatggtgt
     4741 gccggtcacc acgctgcgag ctgggatcat cgtgggccac ggcggcatct cctgggagat
     4801 gacccgtcag ctcgtagagc acctaccaat catgatcaca ccgcagtggg ttcagacgcg
     4861 aacccagccg attgcggtgg ccgacgtggt gcgctacctc gtcggcgtgc tcgaggttcc
     4921 cgaagcagcc gcacgcgcct tcgacatcgg cggcccggag gttctggcct acatcgacat
     4981 gatgcgccgg gttgccacga ttcagggccg gccactgctg gtgttgcccg tgccgctgct
     5041 ctcaccgcac ctgtcgtcgc tgtggttgtc actggtcacc gacgtggatg tgcagacggg
     5101 gcggtcgctc atcgactcga tgatcaacga ggtggtggtg cgtgaggaca gcatccggcg
     5161 gctggtcccc ttcgagccga tggattacga cgacgccgtg ctccaggcac tcggtgagcg
     5221 ggccaaggtg aagcgggcgt cgtgaagggg atcccttggg accgcgggga atccgacacc
     5281 gtgcagcccc gacgacgccg ggtcgtcgcc ggggtgtcgc tggttggcgc ggcgctgctg
     5341 ggcacatcgc tgtcgacgaa acctggctca ccacagttct acggcttgac tctgggcgtg
     5401 gccgcgacct ggaccgtggg cgggctggga tccggtccgc tgcacctggg ttgggtacag
     5461 cgcagcggtg attacccgct ccgccgtccc gtgctcaccc cggtactcac cggggtaggc
     5521 gcgtttgcgg tgttctacgc gggtgcactc gccgcccggc gcattccggt gctaaacacc
     5581 gcgatctcgc atgtcttgcg gtacgcccac cagggatcgg gcccactggt catgctcacc
     5641 actctggcca atggcgccgc cgaggaagtc ttcttccgcg gcgccctgta cgccgccatc
     5701 ggcggcaagc atcccgtcgc cctgtccacc gccgtgtact cgctggccac catcccgacg
     5761 cgaaacccgg cactggtcct cgcctcggcc gcgatgggtg cacttttcgg gctgcaacgc
     5821 cgggccaccg gcggcatcca ggcgccgata ctgacccacc tgacctggtc aacgctgatg
     5881 gtgcgtttcc tgcctccgct tttcagcgcc gcaccggcag cgggccacct cagcaccggg
     5941 gtgcgtcgcc gtgtcgaacg acgactcact cgccggcagc gatgactagt gggctcgtcg
     6001 ccacaggcgg gcggcacccg cggtgcggct caaaatggcg tgcca
//
LOCUS       DASVXZ010000263         1605 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_551879, whole genome shotgun sequence.
ACCESSION   DASVXZ010000263 DASVXZ010000000
VERSION     DASVXZ010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551879"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..804
                     /locus_tag="VF788_05365"
     CDS             217..804
                     /locus_tag="VF788_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEX8933613.1"
                     /translation="MRAATAGLNLTDSVYERLLRERIIVLGSQVEENIANQICAQLLL
                     LSAEDPEQDIRLYINSPGGSVTAGMAIYDTMTLIEPDVATYAMGLAASMGQFLLSAGT
                     RGKRYALPHARILMHQPSAGVSGTAADIAIQADMLIKHKREMAELIAEQTGQPVERII
                     VDSDRDRWFTAEEARDYGFVDQVLTRVNSLPDASR"
     gene            821..1474
                     /locus_tag="VF788_05370"
     CDS             821..1474
                     /locus_tag="VF788_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010695831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEX8933614.1"
                     /translation="MYHLPDGTTPHDRMPQSRYVLPSFIERTSYGVKESNPYNKLFEE
                     RIIFLGEQINNTSANDTMAQLLVLESADPDRMITMYINSPGGSFTAMTAIYDTMQFVR
                     PEIMTVCLGQAASAAAVLLAAGTPGKRLAVPNAQILIHQPATEGVYGQVSDLEIQAAE
                     IQRMRRLLESTLAHHTGQTVERVRADIDRDKILTSLEAKEYGIIDDITQIRKLSAVR"
BASE COUNT          314 a          555 c          478 g          258 t
ORIGIN      
        1 cgtctcagcg ctagcggcca cgccgcagga cgccagatcg agcagtggcg taacgctctg
       61 agcgaacctc gggcgcgcca ggaagtagtc cgtggccacc ttcgttaggg tcggcagtgt
      121 tcctcacccg ccaccggcgg atctgatgac agaaggcagg cacccgtgac ctccgaccac
      181 atcgccgcgg ctgtgccgct gcggtacgcc cccacgatgc gggccgccac ggccggcctc
      241 aacctgaccg actccgtcta cgaacggctg ctgcgcgagc gcatcatcgt gctcggctct
      301 caggtcgagg agaacatcgc caaccagatc tgcgcccagc tcttgctgct gtccgccgaa
      361 gatcctgaac aggacatccg gctttacatc aactcgccag gcggctcggt gaccgcgggg
      421 atggccatct acgacacgat gaccctgatc gagcccgatg tggcgaccta cgcgatgggg
      481 ctggccgcct ccatggggca gttcctgctc tcggcaggga cccgcggcaa gcgatacgcc
      541 ctcccgcatg cccggatcct catgcaccag ccctcggctg gcgtgtccgg caccgcggcg
      601 gacatcgcga tccaggccga catgttgatc aaacacaagc gtgagatggc ggagctcatc
      661 gccgagcaga ccggccagcc ggtcgagcgg atcatcgtgg actccgaccg cgaccgctgg
      721 ttcaccgcgg aagaagcccg tgactacggc ttcgtcgacc aagtccttac ccgcgtcaac
      781 tcgctgcctg acgcgagccg ctgagcttcg aggagacccg atgtaccacc ttcctgacgg
      841 caccaccccg cacgaccgga tgcctcaatc gcgatatgtc ctaccctcgt tcatcgagcg
      901 caccagctac ggggtcaaag agtccaaccc gtataacaag ctgttcgaag agcgcatcat
      961 cttcctcggt gagcagatca acaacacctc ggccaacgac accatggcgc agctgctcgt
     1021 cctggagtcc gcggatccag accgcatgat caccatgtac atcaactcac caggtggctc
     1081 gttcaccgcg atgacggcca tctacgacac gatgcagttc gtccggccgg agatcatgac
     1141 ggtttgcctc ggtcaggccg cttcggctgc tgcggtgctg ctcgccgctg gcaccccggg
     1201 taagcggctt gccgtcccca acgcccagat tctcatccac cagccagcta ccgagggcgt
     1261 gtatgggcag gtttcggact tggagatcca agctgccgaa attcagcgga tgcgtcggct
     1321 gttggagagc accctggctc accacaccgg ccagacggtg gagcgtgtcc gcgcggacat
     1381 cgaccgggac aagatcctta cctccctcga ggccaaggag tacgggatca tcgacgacat
     1441 cacacagatc cggaagctct ccgcagtaag gtgatgaccc tacgtgccgc gacacgccga
     1501 gtgagcggcg cagtgcgcaa ggtgaaccaa tatcgggaaa gctaggtcct cccgcacggc
     1561 ggggtcggac gggtaacgtc gagcacacac gcagccaggc gcgct
//
LOCUS       DASVXZ010000264         4189 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_387237, whole genome shotgun sequence.
ACCESSION   DASVXZ010000264 DASVXZ010000000
VERSION     DASVXZ010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387237"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /gene="atpB"
                     /locus_tag="VF788_05375"
     CDS             <1..619
                     /gene="atpB"
                     /locus_tag="VF788_05375"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEX8933615.1"
                     /translation="AIVLGFGLYLSAKSTAKVPSGLQLVFETVTDRVEREVESNMGIR
                     TAPFVVPVAIALFFFILISNWLAVLPHAWEEYVRPPTSDVNLTFALALLVMILVWVTG
                     IRVQGRHYFRHFIEPYPLLLPLNIIEELVKPVTLALRLFGNILAGTVMVGVIALLPSV
                     VSWAPTSAWKLFDLFIGVLQALIFALLTIIYFGMATGGHEEEAAH"
     gene            711..998
                     /locus_tag="VF788_05380"
     CDS             711..998
                     /locus_tag="VF788_05380"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEX8933616.1"
                     /translation="MSFSALLLAQQPGGPTGSVELAGAFIGGGLALAGGAIGAAIGDG
                     LAGGATIEGVARQPEAQGRLFTIFFLTVGLVEAMYFINLAFMAVFVFALAK"
     gene            1021..1623
                     /locus_tag="VF788_05385"
     CDS             1021..1623
                     /locus_tag="VF788_05385"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004412.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEX8933617.1"
                     /translation="MSTYNLAEQGEKNIFLIPNATFFVELVIFLIVLGVIWRYVVPPV
                     KRAMGERQEMVRRQIQESQQASKRLAEAQARYSEALAEARVEAAKIRESARADAQEIK
                     DEMRQQAEQEVERIRERGEEQLANQRDAVVRELRGQIGELAVTLAGRIVGEAVAEDAR
                     RTGTVDRFLDELQDMASTDSAPENGAGDGAVPASGRRKRK"
     gene            1623..2441
                     /locus_tag="VF788_05390"
     CDS             1623..2441
                     /locus_tag="VF788_05390"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF009967.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEX8933618.1"
                     /translation="MQPASRAALSAARERLESRIGGASVQDRERVGEDLGAVAAVLSE
                     QPAIRRHLADSSAPEQTRRQMVEALFGGKVGRTSLRILSDMVRSRWSRPLDLVDGVEE
                     LAWQALLAFAEREGNLDDVEDELFRFGRILAGQPRLAALLGDETAPAARRAELLDTVL
                     GERVRPVTRRLLERAVRTLRRRSLGEIVDELVDRAAARRERSVAYVTAAGPLSTEQEQ
                     RLTDVLNRIYQRPISLKIDVDPALMGGLVIRVGDELIDGSVAARLAQARQWMSR"
     gene            2552..>4189
                     /gene="atpA"
                     /locus_tag="VF788_05395"
     CDS             2552..>4189
                     /gene="atpA"
                     /locus_tag="VF788_05395"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005150349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEX8933619.1"
                     /translation="MAELTISSEEIRSAIENYVTSFSTKTSREEVGVVIYAGDGIARV
                     EGLPSAMTSELLEFPGGVLGLAQDLYEREIGAVILGNFEKIEEGQEVRRTGRVLSAPV
                     GEGFLGRVVDALGLPLDGLGDIDPDEQRVLELQAPTVIDRQPVKEPLQTGIKAIDSQT
                     PIGRGQRQLIIGDRKTGKTAVCIDTIINQKANWETGDPDKQVRCIYVAVGQKGSTIAA
                     VRETLEDAGALAYTTIVAAPASDSAGYKYIAPYTGSAIGQHWMYQGKHVLIIFDDLSK
                     QAEAYRAIALLLRRPPGREAYPGDVFYLHSRLLERCAKLSNELGGGSLTGLPIIETKA
                     NDISAYIPTNVISITDGQCFFESDLFNQGVRPAINVGVSVSRVGGSAQIKAMKAVGGT
                     LRLELSQYRELEAFAAFGAENLDATSRRQLERGARLTELLKQAQYAPVPVEEQVVSIF
                     LGTRGHLDDVAVADVRRFESEFLADIRKHHSDILDAIRESKQFSDDTEEQLVDAVTEF
                     KKQFTTGDGSTLGTEVEADAMDADEVERESVKVNKPAP"
BASE COUNT          751 a         1262 c         1430 g          746 t
ORIGIN      
        1 ggccatcgtc ctcgggttcg gcctgtacct gtcggccaag tcgacggcca aggtgcccag
       61 tggcttgcag ctggtcttcg agacggtgac cgaccgggtg gagcgcgagg tggagagcaa
      121 catgggcatc cgcaccgcgc cctttgtcgt gccggtggcg attgccctgt tcttcttcat
      181 cttgatatcg aactggttgg ccgtcctgcc gcacgcctgg gaggaatatg ttcgaccacc
      241 gacatcagat gtgaacctca ccttcgccct agccctctta gtgatgatcc ttgtgtgggt
      301 gacgggaatc cgggtccagg gcaggcacta cttcagacac ttcattgagc cctacccact
      361 tctgcttccg ctgaacatca ttgaggagct ggtcaagccg gtcaccctcg cgctgcggct
      421 gttcggcaac attctcgcgg gcaccgtgat ggtcggcgtc atcgccctgc tgccgtcggt
      481 ggtgtcgtgg gcgccgacct cagcctggaa gttgttcgac ctgttcatcg gggtgctgca
      541 ggcactgatc tttgcactgt tgacgatcat ttacttcgga atggcgactg gcggtcacga
      601 ggaggaggcg gcccactaac tctggtccca tcgccccggc gatgtcactc gtcgccggga
      661 atcatccgct caggcacaac aaacccagct tcagcactag aggggaagac atgagtttct
      721 ctgcactgct tctcgcccag cagccgggcg gccccaccgg ctcggtcgag ttggccggcg
      781 ccttcatcgg cgggggactg gcgctggccg gcggcgccat cggtgccgca atcggtgacg
      841 gcctggctgg tggcgcgacc attgagggtg tcgctcgcca gccagaggcc cagggccgac
      901 tgttcaccat cttcttcctg acggtgggtc tggtggaggc aatgtacttc atcaatcttg
      961 ccttcatggc ggtgtttgtt ttcgcgctcg ccaagtgatg tgattgttta aggggtattc
     1021 atgagtacgt acaacctggc cgagcagggc gagaagaaca tcttcctgat ccccaacgcg
     1081 acattcttcg tcgagctggt gatcttcctg atcgtgctcg gagtgatctg gcgctacgtg
     1141 gtgcccccgg tgaagcgcgc gatgggcgag cgccaggaga tggttcgccg gcagattcag
     1201 gagagtcagc aggccagtaa gcgcctggcc gaggcgcagg cccgctactc cgaagcattg
     1261 gctgaggcgc gggttgaggc ggccaagatc cgggagagcg cccgggccga tgcgcaggag
     1321 atcaaggatg agatgcgcca gcaggccgag caggaggttg agcggatccg cgagcgtggc
     1381 gaagagcagc tggcgaacca gcgtgacgcg gtcgtgcgcg agctgcgggg ccagatcggc
     1441 gagcttgccg tgacccttgc tggccgcatc gtgggtgagg cagttgccga ggacgcccgg
     1501 cgcaccggca ccgtggaccg cttcctggac gagctccagg acatggcaag caccgacagc
     1561 gctccagaaa atggtgctgg cgatggcgct gtcccggcat ccggccggcg gaagaggaaa
     1621 tgatgcagcc ggccagtagg gcggcattgt ccgcagccag ggaacggctg gaaagccgga
     1681 tcggcggcgc gagcgtgcag gaccgcgagc gggtgggcga agacctgggt gccgtcgcgg
     1741 cggtactcag cgagcagccc gccatcaggc ggcacctcgc cgattcctcg gcgccggagc
     1801 agaccaggcg gcagatggtc gaagcgctgt tcggtggcaa ggtgggccgg accagcctaa
     1861 ggatcctgag cgacatggtt cgctctcgct ggtcccggcc gttggatctg gtcgatggag
     1921 tcgaggagct ggcctggcag gcgctactgg catttgccga gcgggagggc aacctcgatg
     1981 acgtcgagga cgagctgttc cgattcggcc ggatcctggc tggccaaccg cgcctcgcgg
     2041 cgttgctggg ggatgagacc gctccggcgg cacggcgggc agaactgctg gacactgtgc
     2101 tgggcgagcg cgtccgtccg gtgactcgtc ggctgctgga gcgggcggtc cggacgctcc
     2161 ggcggcgttc tctcggtgag atcgtcgatg agctcgtgga ccgggcagcg gcccggaggg
     2221 aacgctcggt tgcctatgtc accgcggccg gcccgttgtc cacggagcaa gaacagcggc
     2281 tcactgacgt gcttaaccgg atctaccagc ggccgatctc gcttaagatc gatgttgacc
     2341 ccgcgctgat gggcggcctg gtgatccggg tgggcgatga gttgatcgac ggcagtgtgg
     2401 ccgcccggct cgctcaggcc cgtcagtgga tgtcccgatg agcgcacggt gtccgatgaa
     2461 ccacggtatg cgatgaacca cggtgtccaa tgagcacagc gcccgactac tgcacgataa
     2521 tcagatcaga cgagagcagg gaccgatagc catggcggag ctgacgatct cttcggagga
     2581 gatccggagt gcgatcgaga actacgtcac ctcattctcg accaagacct cccgcgaaga
     2641 ggtaggcgtt gtcatctacg cgggtgatgg catcgcccgg gtggagggct tgccctcagc
     2701 gatgaccagc gagctgctgg agttcccggg tggtgtgctg ggcctcgcac aggatctcta
     2761 tgagcgagag atcggtgcgg tcatcctggg caacttcgag aaaatcgaag agggccagga
     2821 ggtcagacgt accggcaggg tcctctcggc accggtcgga gaaggcttcc tcggacgggt
     2881 ggtggacgcg ctaggcctcc cgctcgatgg tctgggtgac atcgaccctg atgagcagcg
     2941 tgtcctagag ctccaagcac cgacagtgat cgatcgccag ccggtgaagg aacccctgca
     3001 gaccggcatc aaggcgatcg actcgcagac cccgatcggc cgcggacagc gtcagctcat
     3061 catcggtgac cgaaagaccg gcaagaccgc cgtatgtatc gacaccatca tcaaccagaa
     3121 ggcgaactgg gagaccggcg atccggacaa gcaggtgcgt tgcatctacg tggcggtcgg
     3181 ccagaagggc agcacgatcg ccgcggtgcg cgagaccctg gaggacgccg gcgcgctcgc
     3241 ctataccacc atcgtcgcgg caccggcctc ggattcggcc ggctacaagt acatcgcccc
     3301 ctacaccggt tcggcgatcg gccagcactg gatgtatcag ggcaagcatg tactgatcat
     3361 cttcgatgat ctgtccaagc aggcagaggc ctaccgggcc atcgcgctgc tgctgcgccg
     3421 cccgccaggt cgggaggcct accccggcga tgtgttctac ctgcactcac ggttgctgga
     3481 acgctgcgcg aagctgtcca acgagctggg cgggggatcg ctgaccgggc tgccgatcat
     3541 cgagaccaag gccaacgaca tctccgccta catccctacc aatgtgatct ccatcaccga
     3601 tggtcagtgc ttcttcgagt ccgacttgtt caaccagggt gtccgtccgg cgatcaacgt
     3661 cggtgtgtcg gtctcccggg tcggcggttc agctcagatc aaggccatga aggcggtcgg
     3721 cggcacgctg cggttggagc tatcgcagta tcgcgagctg gaagcgttcg ccgcgttcgg
     3781 agcggagaac ctggacgcca cctcgcggcg tcaactcgag cgcggggccc ggctgactga
     3841 gctgctcaag caggcgcagt acgcaccggt tccggtcgag gagcaggtgg tctcgatctt
     3901 ccttggcacc cgcggtcacc tcgacgacgt ggcggtggct gacgtgcgac gcttcgaatc
     3961 ggaattcctt gccgatatcc gcaagcacca ctcggacatc ctggacgcta tccgggaaag
     4021 taagcagttc agcgacgaca ccgaagagca gttggtggac gcagtgacgg agttcaagaa
     4081 gcagttcact accggcgatg gctcaacgct gggtacggag gtcgaggccg acgcgatgga
     4141 cgccgatgag gtcgagcgcg aatcggtgaa ggtcaacaag ccggccccc
//
LOCUS       DASVXZ010000265         1757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1089939, whole genome shotgun sequence.
ACCESSION   DASVXZ010000265 DASVXZ010000000
VERSION     DASVXZ010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1089939"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(248..424)
                     /locus_tag="VF788_05400"
     CDS             complement(248..424)
                     /locus_tag="VF788_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933620.1"
                     /translation="MPVESGGEVSGERGALPVDTSSRHLDSALELLEHVGGTLLATPI
                     TGQLCKVIDRTVEQ"
     gene            678..959
                     /locus_tag="VF788_05405"
     CDS             678..959
                     /locus_tag="VF788_05405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933621.1"
                     /translation="MIADRGGTTRVSHLRHLVAWLGLLARSSVSKNAEILVLRHEVAV
                     LRRQVKRPRMSWADRAVFSALTRLLPKACQRHLIVTPSTMLRWHQDLVK"
     gene            1143..>1757
                     /locus_tag="VF788_05410"
     CDS             1143..>1757
                     /locus_tag="VF788_05410"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933622.1"
                     /translation="MDPAPRRSGPSWRQFLTAQARGIFAIDFFHVDTVLLQRLYVLFV
                     VEHATRHIHLLGITTHPSGAWVAQQARNLVMNLGDRLATFKFLIRDRDTKFTSAFDAV
                     FTSEVIRILRTPVRAPRANGIAERWVGTVRREILDRILIMNRRHLECVLAEYVAHFTT
                     TGHTAPSAKPHHLNPIRHSRHHPTVASNATTASADSYTSTPRLHD"
BASE COUNT          323 a          609 c          523 g          302 t
ORIGIN      
        1 acacggtgag ggagcgaggc cgacgccgag aggatgcgct ccgcgacgaa ccacaccggc
       61 tggctcggtc acagaaagtc acaggtgccc aatcagggag gcagggagtt ctccctgccg
      121 agtccctgcc ttgccttccc gccctgagct gcgcagaccc tggccaagga ggcagctcgc
      181 ttcgcttgcg gatgcctcgg aaaccccgtt ttccggtcga gacgacacca cggcgcccct
      241 ccctccctca ctgttcgacc gtcctatcga ttaccttgca taactggccg gtgatggggg
      301 tagcgagaag cgttccgccg acgtgctcca gcaattcgag cgcggagtcg aggtgacgag
      361 acgaagtgtc aacgggcagg gcgccgcgct ccccgctgac ctcaccaccg ctctcgacag
      421 gcaacccgcc ccacaatccg gccgatccgc gatgaggcac tagcaccctg ggtgaggcac
      481 atgcctcacc cttcagtcaa gcacctgccc tcgctttgag ctgccgcgag gcagaaacct
      541 cggcgacaca gaccgggcac cgaccaacta aattcggtcg gtttcagtga gctgggcagg
      601 gtgctcgcac cttgtgggtg ccgagcaggt cgtccacgtc cctgacatgc ggcatctctg
      661 gacggtggtt gtcgggcatg atcgctgatc gtggcggtac gactcgtgta tctcatcttc
      721 ggcacctcgt ggcgtggctc ggactgttgg cccgtagctc ggtgtcgaag aacgcggaga
      781 tcctggtact ccggcatgag gtcgccgtgc tgcgccgcca ggtcaagcga ccacgaatgt
      841 cctgggcgga ccgggcggtg ttttcggcgc tgacccggtt gctgcccaag gcctgccagc
      901 gacacttgat cgtcacgccg agcacgatgt tgcgctggca ccaagaccta gtgaaatgac
      961 ggtggaccca gccccgccgc cgccacctgg ccgctcgacg gcaccagagc tacgccggct
     1021 ggtcctacgc ctcgcatcgg agaactcgac ctgggggcta ccggcggatt caaggtgaac
     1081 ttgccgggct cggctacaaa cttgcggcga gcaccgtgta gtcgatcctg aaacgcgcag
     1141 gcgtggaccc agcacctcgt cgcagcgggc ccagctggcg acagttcctg accgcccaag
     1201 cacgcgggat tttcgccata gatttcttcc acgtcgacac ggtgctactc cagcggttgt
     1261 acgtgctgtt cgtcgtggag cacgccaccc gccacattca cctgctcgga atcaccaccc
     1321 accccagcgg tgcgtgggtt gcccagcagg ctcgcaacct cgtgatgaac ctcggcgacc
     1381 gtctggcgac attcaagttc ttgattcgag atcgggacac caagttcacc agcgccttcg
     1441 atgccgtgtt caccagcgag gtcatccgca tccttcgcac accggtacgc gcaccgcggg
     1501 cgaacgggat cgctgagcga tgggtcggca cggtacgccg agagattctc gaccggatac
     1561 tgatcatgaa ccgccgacat ctcgagtgcg tgctagccga gtatgtggcg cacttcacca
     1621 ccaccggcca caccgcgccc tcggccaagc cccaccactt aaacccgatc cgccactcgc
     1681 gccaccatcc aacggtcgcg tccaacgcca cgaccgcctc agcggactca tacacgagta
     1741 cgcccaggtt gcatgac
//
LOCUS       DASVXZ010000266         1517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1090011, whole genome shotgun sequence.
ACCESSION   DASVXZ010000266 DASVXZ010000000
VERSION     DASVXZ010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1090011"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            135..746
                     /locus_tag="VF788_05415"
     CDS             135..746
                     /locus_tag="VF788_05415"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEX8933623.1"
                     /translation="MADYILPDLPYDYAALEPHISGAIMELHHSKHHATYVKGANTAL
                     EQLAEARDRDALTTVNMLEKNLAFNLGGHVNHSVFWPNMSPDGGDKPDGELAAAIDEH
                     FGSFDGFRKHFTANSLGVQGSGWSILAWESMGQRLVLEQVYDHQGNMTPGMIPLLLLD
                     MWEHAFYLQYRNVKPDYVDAWWNVVNWADVDRRLAHARSVVLL"
     gene            779..1042
                     /locus_tag="VF788_05420"
     CDS             779..1042
                     /locus_tag="VF788_05420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933624.1"
                     /translation="MLPPALEVLTAWSIAETEADPAVFRQAMDRAIGDAAGSPDPLRG
                     LAQMMFGLSSLSGILLDELADATGRSRGEVLHAVNLRYLDPTG"
     gene            1218..>1517
                     /locus_tag="VF788_05425"
     CDS             1218..>1517
                     /locus_tag="VF788_05425"
                     /inference="COORDINATES: protein motif:HMM:NF015863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HEX8933625.1"
                     /translation="MTAVAEFREPAGRPRQPVRTHRVTDRTAPGKFLRSVWRIHFYSA
                     IFAAPILIVMALTGLVIMYTEPITGLLYSGTTRVAAQGRVPVSLQTQQAAADRVAP"
BASE COUNT          253 a          511 c          488 g          265 t
ORIGIN      
        1 gttcccgtcg tgacgacgag cgttgcgctg cggaagcaaa ttgcaagata gtggcagcac
       61 tgtgaagcac ccgtgagtgg cgatgcgagc catggctcac atcgccactc acggggtgta
      121 ctggaggtct ccccatggcc gattacatct tgcccgatct gccctacgac tacgccgctc
      181 tggagccaca tatctccggg gcgatcatgg agctgcacca ctccaagcat cacgccacct
      241 acgtcaaggg ggcgaatacc gccctggagc agctggccga ggcgcgcgat cgtgacgcgc
      301 tgaccacggt gaacatgctc gagaagaacc tggccttcaa cctcggcggg cacgtcaacc
      361 actcggtgtt ctggcccaac atgtcccccg acggcggcga taagcccgac ggcgagctcg
      421 ccgcggcgat cgacgagcat ttcggatcat ttgacggatt ccgcaagcac ttcaccgcca
      481 actcgctcgg cgtgcagggg tcggggtggt cgatcctggc ctgggaatcg atggggcagc
      541 gcttggtcct cgagcaggtt tatgaccacc agggcaacat gactcccggc atgatcccgc
      601 tgctgctgct cgacatgtgg gagcacgctt tctacctgca atatcgcaat gtcaaaccgg
      661 actacgtcga tgcgtggtgg aacgtggtga actgggccga cgttgaccgc cggctcgcgc
      721 acgcccgatc ggtggtgctg ctctgagcat cgagagccct gatgagctgc tgcacgcggt
      781 gctgccaccg gcgttggagg tgctcaccgc gtggagcatc gccgagaccg aggcggatcc
      841 cgcagtcttt cggcaggcca tggaccgtgc catcggcgac gccgccggct cgccggatcc
      901 cctgcgcggg ctggcccaga tgatgttcgg gctgtcctcg ctgtccggca tcctgctcga
      961 cgagctggcc gatgccaccg gccggtcccg cggcgaggtc ctgcacgccg tcaatcttcg
     1021 ctatctcgac ccgaccgggt agtcaacgta cgggagtgcc acttgtggtg ctgttggccc
     1081 tgcctgttca gcccgaattg ccgggaactc cggacacccc atggccgact tgtcttctag
     1141 agctggaggt ggccgagcaa gggcccaggg gagctcggac ccgatgaccc acgatcgatg
     1201 cgatcgagga ggcccgcgtg acggctgtcg ccgagttccg cgaacctgct ggccgccccc
     1261 ggcagccggt gcggacacac cgggtcaccg accgcaccgc gccggggaag ttcctccgca
     1321 gcgtctggcg gatccacttc tactctgcca tcttcgccgc ccccatcctg atcgtgatgg
     1381 ccctgaccgg cctagtgatc atgtacaccg agccgatcac cggtctgctg tactccggga
     1441 ccacgcgggt cgccgcccag ggccgggtgc cggtgagctt gcagacccag caggctgcgg
     1501 cggacagggt cgcaccg
//
LOCUS       DASVXZ010000267         1935 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_910778, whole genome shotgun sequence.
ACCESSION   DASVXZ010000267 DASVXZ010000000
VERSION     DASVXZ010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_910778"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VF788_05430"
     CDS             complement(<1..340)
                     /locus_tag="VF788_05430"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933626.1"
                     /translation="MKSIVLGDGHAVFMESLVSVLVGQGFRVPAIARSLTGTVEAVRH
                     HHPDVCLLARRFSDGDGISAIGRIIEASPTTRVIILAADRDAEAMRQAIRLGAAGYVH
                     KTCGIRKLVHA"
     gene            701..>1935
                     /locus_tag="VF788_05435"
     CDS             701..>1935
                     /locus_tag="VF788_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005441042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEX8933627.1"
                     /translation="MPVATALPTTSAHLSGLLEAVLPEPSLRELLARAASPDLELQGP
                     AATRPLVVAALARAGHPVLAVTATDREAGELSAELADVLGAGVIAELPSWETLPHERL
                     SPRADTVGRRLAVLRRLAHPEESPGVLQVVVTGVRSLIQPMLAGLGEIAPVRLRVGEE
                     HDFDEVLARLADLAYTRVDMVDRRGEFAVRGGIIDVFPPTADHPVRVEFWGDEVSEIR
                     SFAVADQRTLVPTDELHAPPCRELLLTEGVRAAAARLVGQAPPGPVAQLLEKVAAGIP
                     AEGMESLIPVLAGSELALLTDAMPAGTHVLLADPERIRTRAADLVRTGQEFLEASWMV
                     AAGGGAAPVDVAALDLSASAYRSLSEVAEHARSTGLPWWTLSPLTTDIRGPLRLGISP
                     AQSYHGDVTRAFTDLRAHTA"
BASE COUNT          298 a          685 c          645 g          307 t
ORIGIN      
        1 gcgcgtgaac cagcttgcgg ataccacagg tcttgtgcac atagccggcg gcgcccaacc
       61 ggatggcctg gcgcatggct tcagcatcac gatccgctgc gagaatgatt acccgggtcg
      121 tcgggctcgc ctcgataatc cggccgatcg cgctgattcc gtcgccatcg gagaaacgtc
      181 gggccagcag gcagacatcg gggtggtgat ggcgtaccgc ctcaaccgtc ccggtcaggc
      241 tccgggcgat cgccggtact cggaatccct gcccgacgag caccgacacc agcgattcca
      301 tgaaaactgc atgaccgtca cccagcacaa tgcttttcat gtcagaccga ccggattgtc
      361 cggatccgtc cacgccccag cggtcaccat tatccccacc ccaaggtacc atttcggccg
      421 aataatgtgt cgtcacgaat taaccgcaga taagcgattg accaccctca gcatacaacg
      481 cagcattgct tatcgattac ggagatcacc gaacacggca cgtaacatgc tgttccagga
      541 ctaccaacct gcctgctcgc agccgctgag gaccaccaac cctgggcgac tcgtggagga
      601 ggccggtcgg tatcatggaa gcacgatccc ggtgcgccgg tcgcatcccc ggccggggtc
      661 cgttctgcgt tagaacgtct gcgcccgaaa ggtccccacg gtgcctgtag cgactgcgct
      721 accaaccaca tcagctcacc tgtccggcct cctcgaagcc gtcctgcctg agccctcgct
      781 gcgcgaactc ctggcccggg cagcctcccc cgacctggag ttgcaggggc cggctgcgac
      841 tcgcccgctg gttgtggccg cgctggctcg agcaggccac ccggtgctgg ccgtcaccgc
      901 taccgaccgg gaggccggcg agctgtccgc cgaactagcc gacgtactgg gcgccggggt
      961 gatcgcggag ctgccctcgt gggagacgct gccgcatgag cggctgtccc cccgggccga
     1021 cacggtgggc cgccgcttgg cggtgctgcg ccggttggcc caccctgagg aatccccagg
     1081 ggtcctgcag gtggtggtca ccggcgtgcg atcgctgatc cagccgatgc tcgccgggtt
     1141 gggcgagatc gccccggtgc ggctgcgcgt cggggaggag cacgacttcg acgaggtgct
     1201 ggcccggctg gcggatctcg cctacacccg cgtcgacatg gtcgatcggc gcggcgagtt
     1261 cgcggtccgg ggcggcatca tcgacgtctt cccacctact gccgaccacc ccgtgcgggt
     1321 ggagttctgg ggcgatgagg tctccgagat ccggtcgttc gcggtcgccg accagcgcac
     1381 cctggtgcct accgacgaac tgcacgcccc gccgtgccgg gagctgctgc tgaccgaggg
     1441 ggtgcgcgcc gccgcggcgc ggctggtcgg tcaggcgcct ccggggccgg tcgcgcagct
     1501 gctggagaag gtcgccgccg gcatcccggc cgaagggatg gagtcgctca tccccgtcct
     1561 ggccggctcg gaactcgcat tgctcaccga cgcgatgccg gcgggcaccc atgtgctcct
     1621 cgccgatccg gaacggatcc ggacccgggc cgccgacctg gtccggaccg ggcaggagtt
     1681 cctggaggca tcgtggatgg tcgccgccgg tgggggagcg gcaccggtgg acgtcgcggc
     1741 actggatcta tccgcctcgg cgtaccgcag cctgagtgag gtcgctgagc acgcccggag
     1801 cacgggactg ccctggtgga cgctgagccc gctgaccacc gacatccggg ggccgctgcg
     1861 gctggggatc agtcccgcgc agtcctacca cggcgacgtg acgcgcgcct tcaccgacct
     1921 gcgcgcgcat accgc
//
LOCUS       DASVXZ010000268         2239 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_297778, whole genome shotgun sequence.
ACCESSION   DASVXZ010000268 DASVXZ010000000
VERSION     DASVXZ010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297778"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..455
                     /locus_tag="VF788_05440"
     CDS             <1..455
                     /locus_tag="VF788_05440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933628.1"
                     /translation="SGANANMAAVLGMDGQYTVTDSVRTDTQWQPLNLYVKVGSQTTI
                     ELTMGLGHFGQLNLGTADFDAVSVTQVSAIPNGATVADLATATAAPAKPDTAAQSTFA
                     QSPNEGIWVVVGVLVAVGIGAAVFLMRRGNTEPTPAGDTEPRAHAESD"
     gene            488..2026
                     /locus_tag="VF788_05445"
     CDS             488..2026
                     /locus_tag="VF788_05445"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX8933629.1"
                     /translation="MPTRPWGSISNLTGYRTMPTEPGDSATPVLDPVGSQASAPQPRP
                     RTVGPALVAASCTTAGTARHVQVVDGLRGIAILLVLLFHYWQLSWWVILIPGLPDHYN
                     LEFVQYAGYLGVELFFFISAFCLFHPHAKAMFSAGPVPTLKHFYYRRAMKIVPSYLFA
                     LFVFGVFFSSLYPITYKHGELVDLGLHLTFLHDLLPETRSSFDGVLWSLAVEVQFYYV
                     FPMLAKAFRRLPWLTAAAMVAVALLFRAWAQHKPLENFSQWDSQLPGFLDLFAFGMLA
                     AYLLVWIRQRAAAALQLRYAFTVLAVAGFVALLMMFRWTYNIRYDAPPPEVWQSNNRQ
                     FLGLLFLCITVASTFAVGLWRKILANRVLLFLSTISYNLYIWHQSIGVLIRDRHWWKA
                     NTPTPMDDPHWRWTYTIVAVTVSIVVASLITYGFERPLLRLGVRGAIRAFLAALHLVP
                     ASQSRRPPRVRIELRRNNQKNRRAAGAANRPRWPTRPHLARDPRSPDAPPASSPGIGP
                     DREN"
BASE COUNT          376 a          701 c          667 g          495 t
ORIGIN      
        1 caagcggcgc gaacgcgaat atggcggctg tgctcgggat ggacgggcag tacaccgtca
       61 ccgactcggt gcgcaccgac acgcaatggc agccgctgaa cctctacgtc aaggtcggtt
      121 cgcagaccac catcgagctg accatggggc tcggccactt cggtcagctc aacctcggca
      181 cggcagattt cgacgctgtg tcagtgaccc aagtcagtgc tatcccgaac ggcgccacgg
      241 tggccgacct cgcgaccgcg actgcggctc cggcgaagcc ggacacagcg gctcagagca
      301 ccttcgctca gagcccgaac gagggcatct gggtggtcgt gggcgtcctg gttgcggtgg
      361 gcataggcgc ggccgtgttc ctcatgcgtc gcggtaacac ggagcccaca cccgcgggag
      421 acacggagcc tcgagcccac gccgagtccg actaggcggg tgcgtttgag ccttgcgctg
      481 aactcccatg ccgacgcggc cctggggatc gatttcgaac ctgaccggat accggaccat
      541 gccaactgaa ccgggggatt ccgccacgcc ggtgcttgac ccggtcggct cgcaggcgtc
      601 tgctccgcag ccgaggccgc gcaccgtggg gccggctctg gtcgcggcct cgtgcactac
      661 tgccggcacg gcccggcatg ttcaggtggt ggatggtctg cgtgggatcg ccatcctgct
      721 ggtactgctg ttccactact ggcagctgtc ctggtgggtg atcctgatcc cggggttgcc
      781 tgaccattac aacctcgaat ttgtgcagta cgccggttat ctcggtgtcg agctgttctt
      841 cttcatcagc gcattttgcc ttttccatcc acatgcaaag gcgatgttca gtgcggggcc
      901 agtgcccaca ctgaagcatt tctactaccg gcgcgccatg aaaatcgtgc cgtcgtacct
      961 gtttgccctg ttcgtcttcg gagtcttctt ctccagcctc tatccgatca cctataaaca
     1021 cggcgagctt gttgatctag gtttgcacct cacctttttg cacgacctcc tacccgagac
     1081 gcgttccagc ttcgacggtg tgctctggtc gctggcggta gaggtgcagt tctattacgt
     1141 cttcccgatg ctggcgaagg cattccgtcg cctcccatgg ttgacggcgg ctgcgatggt
     1201 tgctgtcgcc ttgctttttc gagcatgggc gcagcacaag ccgctggaaa atttctcgca
     1261 gtgggacagc cagctgccgg gttttctcga cctcttcgcg ttcggcatgc tcgctgcgta
     1321 cctgctggtt tggattcggc aacgcgcggc ggcggcactg caactgcgct acgccttcac
     1381 cgtgctggcg gtggcgggct tcgtcgcatt gctgatgatg ttccgatgga catacaatat
     1441 ccgctacgac gcaccgccgc ctgaggtatg gcagtcgaac aaccgccaat ttctcggatt
     1501 gctgttcctc tgcatcacgg tcgcgtccac gttcgccgtc ggcctatggc gaaagatctt
     1561 ggctaaccgg gtgctactgt ttctttccac tatttcctac aacctctaca tctggcatca
     1621 gtccataggt gtgctaattc gtgatcggca ctggtggaag gccaacacac cgacgccgat
     1681 ggatgaccca cattggcgct ggacctacac gatcgttgcg gtcaccgtct cgatagtcgt
     1741 cgccagtctg atcacttacg ggttcgaacg gccactactg cgacttggtg tgcgaggcgc
     1801 gatccgggcc ttcctggcgg cgttgcatct ggtgcctgct agccagtccc ggcgaccgcc
     1861 tcgggttcgg atcgagctgc ggcgcaacaa tcaaaaaaac cggcgagctg caggggcggc
     1921 caatcgacca cggtggccga caaggccgca cctggcgcgc gaccctagat cacctgatgc
     1981 tccaccagca tcatcgccgg ggatcggccc agatcgcgag aattaggccg tcggtgccgc
     2041 cttggccggc ggctactgcg agcttctggc aagagttcga acggcgacta attgcgctat
     2101 gacgtgagtt gtatttcttt gccatgtcga tcgtgcagta gatcaatcac cacaagtagc
     2161 tatcccttgt ggggtttgta gtaagcctac tgtcgattgt cggtcttctt tcgttcacct
     2221 tcgagaggca gcgtcctcc
//
LOCUS       DASVXZ010000269         4963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_297822, whole genome shotgun sequence.
ACCESSION   DASVXZ010000269 DASVXZ010000000
VERSION     DASVXZ010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297822"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..886
                     /gene="dxr"
                     /locus_tag="VF788_05450"
     CDS             <1..886
                     /gene="dxr"
                     /locus_tag="VF788_05450"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEX8933630.1"
                     /translation="TGSRGLAPTLAALRSGATLALANKESLVAGGSLVTSAAAPGQIV
                     PVDSEHSALAQCLRAGSRTEVSRLVLTASGGPFRGRRREQLDGVTAEQALAHPTWRMG
                     PVVTVNSATLMNKGLEVIETHLLFGIPYDRIDVVVHPQSVIHSMVTFVDGSTIAQASP
                     PDMRLPIALALGWPDRVAGAAPACDFASPVSWTFEPVDRETFPAIELAKTAGAAGGCV
                     PAVFNAANEEAVAAFLESRISFRGIVQVVSAVLEESSGWRTDPTTVEDVLAAEDWARS
                     RANELLGGRLTRAVRSPE"
     gene            900..2108
                     /locus_tag="VF788_05455"
     CDS             900..2108
                     /locus_tag="VF788_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEX8933631.1"
                     /translation="MTFVLGVVLFALGIGASLALHEAGHMYTAKAFGMKVRRYFIGFG
                     PTLFSFRRGETEYGLKAIPAGGFCDIAGMTALEELSDPDDRKRAFIRFSVWRRVVVLS
                     AGALTHFVLGIVLIYVMAVSTGLPNLNPAPTPAVVSKVSPCLAVQADGSCQPGSPAPA
                     RDAGLQPGDRVLAVGGIPVRDSDGLITAIRSHAGPTEVRFDRNGQQRTVLIDVVRVPL
                     SSLGDKGDEVVGAIGISPPRRAVVMPRVGPVEAIGQTVAFTGTMFANTGQALKEFPQR
                     VPALLDRIAGKDRPDTPVSVVGASVLGGDAAGVGAWWFFLILLVALNLFLGVFNLLPL
                     LPLDGGHIAVNLYEGIRNAIRRATGRPDGPPVDYTRLMPLTYAIVLVFIGVSLLTLTA
                     DIVNPIRLNR"
     gene            2147..3241
                     /gene="ispG"
                     /locus_tag="VF788_05460"
                     /gene_synonym="gcpE"
     CDS             2147..3241
                     /gene="ispG"
                     /locus_tag="VF788_05460"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEX8933632.1"
                     /translation="MPAVPPPVLAERRKTRQLLLGPVGVGSEHPVSVQSMTTTLTSDI
                     NATLQQIAELTAAGCDIVRVAVPSADDAAALPAIARKSRIPVIADIHFQPKYVFAAID
                     AGCAAVRVNPGNIKKFDDRVAEIAKAAKDAGTPIRIGVNAGSLDPKILARYGKATPEA
                     LVASALWEASLFAEHDFHDIKISVKHHDPVVMVRAYEQLAAQCDYPLHLGVTEAGPAF
                     QGTIKSATAFGALLSQGIGDTIRVSLSAPPVEEVKVGLQILESLNLRTRRLEIVSCPS
                     CGRAQVDVYKLTEEVTAGLEGMEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIF
                     VHGKVIKTVPEAQIVETLIEEAFRLAGEGS"
     gene            3276..4133
                     /locus_tag="VF788_05465"
     CDS             3276..4133
                     /locus_tag="VF788_05465"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8933633.1"
                     /translation="MLKHASAHLLDDRHVRSVRAVLATDPVMSCMVAARIEHGGLEPW
                     RLGGELWGFPGEPGGAREGALDGLCFSGANLVPLYGGRPAMRAFAERAASQTRSCSSM
                     VGPAVHVLALWSQLCDCWGPAREERLNQPLLVLADQPLVLADPLVRMVRPDELDRYLP
                     AAVAMFTEEVGVDPQLPDGGAGYRARVAELIAAGRAFARFEADEVVFKAEIGAMSSTV
                     GQIQGVWVHPDRRGQGLAAAATAAVVVQLQRMGRIASLYVNAYNQPARAAYRRVGFTQ
                     VGSFATVLF"
     gene            4204..>4963
                     /locus_tag="VF788_05470"
     CDS             4204..>4963
                     /locus_tag="VF788_05470"
                     /inference="COORDINATES: protein motif:HMM:NF017073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NTF2-like N-terminal transpeptidase
                     domain-containing protein"
                     /protein_id="HEX8933634.1"
                     /translation="MAAALVAILTVTLTLVGALLAGCGIFGSDPRDAATAFLDAVARG
                     DAAAAGRLTDNPVAATELIRQVRDELKPQRVQLVAGDVHSGDHVASASYVADWDLGRG
                     RQWRYSDTFELVPADNSWSVRWSPAVLHPRLSAEQRLAVREVPVDPPPVADRSGAPLL
                     TWQTVVTVALDRSKTPDLPGVAAQLAAALGQFDPQITQQSIIAGANAAPAGVPSAVAV
                     LRERDYQSVRERIHELPGVSFPSQQQLLGPEHDFA"
BASE COUNT          756 a         1608 c         1742 g          857 t
ORIGIN      
        1 gaccggttcc cggggcctgg cgccgacgct ggccgcgctg cgcagcggcg ccaccctggc
       61 gctggccaat aaggagtccc tggtggcggg gggctcgctg gtgaccagcg ccgccgcacc
      121 cggccagatc gtcccagtgg attccgagca ctccgcgctc gcccagtgcc tgcgcgcggg
      181 cagccgcacc gaggtgtccc ggctcgtgct gactgcctcc ggaggaccgt ttcgcgggcg
      241 acgccgtgag cagctcgacg gggttaccgc tgagcaagcg ctggcgcacc cgacctggcg
      301 gatggggccg gtcgtcacgg tgaactctgc caccctgatg aacaagggcc tggaggtgat
      361 cgagacccac ctgcttttcg gcatccctta tgaccgcatc gacgtcgtgg tgcacccgca
      421 gtcggtgatt cactcgatgg tcactttcgt ggacggttcg acgatcgccc aagccagccc
      481 gccggacatg cgactgccga tcgcgctggc gctgggctgg ccggaccggg tggccggcgc
      541 ggccccggcc tgcgacttcg ccagcccggt cagctggacc ttcgaaccgg tcgacaggga
      601 gactttcccc gctatcgagc tggccaaaac ggcgggtgcc gccggtggct gtgtcccagc
      661 ggtgttcaat gcggcgaacg aggaggccgt ggcggccttc ctcgaaagcc gcatctcctt
      721 ccgtgggatc gtccaggtgg tatcggcagt gctggaggag tcatcgggct ggcgaaccga
      781 tccgactacg gtggaggacg tgttagctgc cgaagattgg gcccggagca gggccaacga
      841 gctgctgggt ggacgactca cccgggccgt aaggagcccc gaatgaggag gaacacagcg
      901 tgacgttcgt gctgggggta gtgctgttcg cgttaggcat cggagcgtcc ctcgcactgc
      961 atgaggccgg tcacatgtac accgcaaagg ccttcgggat gaaggtccgt cgatacttca
     1021 tcggcttcgg tcccaccctg ttctccttcc gccggggtga aaccgagtac ggcctcaaag
     1081 cgatcccggc cggtgggttc tgcgatatcg ccggcatgac cgcgctggaa gagctctccg
     1141 acccggatga ccgcaagcgg gcgttcatcc ggttctccgt ctggcgacgg gtggtggtgc
     1201 tctccgcggg tgcgctgact cacttcgttc tgggcatcgt gctgatctat gtaatggcgg
     1261 tatcgaccgg cctacccaat ctcaacccag caccgacacc cgcggtggtg tcaaaagtca
     1321 gcccgtgcct cgcagtgcaa gccgacggct cctgccagcc gggctccccg gcaccggcca
     1381 gggacgcggg cctccagccc ggtgatcgtg tgctggccgt ggggggcatc ccggtgcgcg
     1441 attccgatgg cctgatcacg gccatccgga gtcatgccgg ccccaccgag gtgcggtttg
     1501 accgtaatgg gcagcagcgc acggtgctga tcgatgtcgt ccgggttccg ctttcgtcac
     1561 tgggtgacaa gggcgacgag gtggtcggcg caatcggaat atcgccgcca cgccgggcgg
     1621 tcgtgatgcc gcgggtaggt ccggtggagg cgatcggtca gacagttgcc ttcaccggca
     1681 ccatgttcgc caataccggg caggcactga aggaattccc ccagcgggta ccggcgctgc
     1741 tggatcggat cgccgggaag gaccggccgg acacgccggt cagcgtggtc ggtgccagcg
     1801 tgctgggggg cgatgccgca ggtgtcggcg cttggtggtt cttcctgatc ctgctggtag
     1861 cactgaacct gtttctcggc gtattcaacc tgttgccgct gctgccactg gacggtgggc
     1921 acatcgccgt caacctctac gaaggcatcc gcaacgccat ccggcgggcc accggccgcc
     1981 cggacggccc tccggtggac tacacccggc tcatgccgtt gacctacgcc atcgtgctcg
     2041 tgttcatcgg ggtgagcctg ctgacgctca ccgcagatat cgtcaatccg atccgcctga
     2101 accgatgagc gctaccgatc acaagaggcc ttcgacgatg atcggtatgc cggccgtgcc
     2161 gccaccggtg ctcgccgaac gccgtaagac ccgccaactg cttcttggtc cggtcggtgt
     2221 gggcagcgag cacccggtgt cggtgcagtc gatgaccacc acgctcacct ccgacatcaa
     2281 cgccacgctg cagcagatcg ccgaactcac cgcggcgggc tgcgacatcg tgcgggtcgc
     2341 ggtccccagc gctgatgacg ccgcggcgct gccggccatc gcgcgcaagt cccggatccc
     2401 ggtgatcgcc gacatccact tccagcccaa atacgtcttc gccgccatcg acgctggttg
     2461 cgctgccgtt cgggtcaatc cgggcaatat caagaaattc gacgaccggg tggccgagat
     2521 cgccaaggcg gccaaggatg ccggcacgcc gatccggatc ggcgtcaatg ccggctcgct
     2581 ggatcccaag atcctggcca ggtacggcaa ggcgaccccg gaggcgctgg tggcctccgc
     2641 gttgtgggag gcgagcctgt tcgccgagca cgatttccac gacatcaaga tctcggtgaa
     2701 acatcacgac ccggtggtga tggtgcgggc ctacgagcag ctcgcggcgc agtgcgacta
     2761 cccgttgcat ctcggcgtca cggaggccgg tccggcgttc caaggcacca tcaagtcagc
     2821 caccgcgttc ggggcgttgc tcagccaggg catcggggac accatccggg tctcgttgtc
     2881 cgcgccgccg gttgaggagg tgaaggtcgg cctgcagatc ctggagtcgc tgaacctgcg
     2941 aacccgcaga ctggagatcg tgtcgtgccc gtcgtgcggg cgagcccaag tggacgtcta
     3001 caagctcaca gaggaggtga ccgccggcct ggagggcatg gaggtgccac tgcgggtggc
     3061 ggtgatgggt tgcgtggtca acgggccggg ggaggcccgc gaagccgacc tcggggtggc
     3121 atcgggtaac ggcaagggcc agatcttcgt ccatggcaag gtgatcaaga ccgtgcccga
     3181 ggcgcagatc gtcgagactc tcatcgagga agccttccgc ttggcggggg agggttccta
     3241 acgcggtcat ccgcggttct ggcaggctag gtagcgtgct caagcacgcg agcgcgcatc
     3301 tgctggacga ccgccatgta cgcagcgtcc gcgcggtgct ggccacagac ccggtgatgt
     3361 cctgcatggt cgccgcgcgg attgaacacg gtggcttgga gccgtggcgg cttggcgggg
     3421 agctgtgggg ctttccgggt gagcccgggg gagcgcgcga gggtgcactg gacggactgt
     3481 gcttttctgg cgcgaacctg gtaccgctct acggtggccg gccggcgatg cgggctttcg
     3541 ccgagcgggc ggcaagccag accaggtcgt gctcatcgat ggttggaccc gctgttcatg
     3601 tgcttgcgct gtggtcacag ctgtgcgact gctgggggcc ggctcgagag gagcgcctga
     3661 accagcccct gctggtactt gccgaccagc ccctggtgct ggctgacccg ctggtgcgga
     3721 tggtgcggcc agacgagctg gaccgctact taccggccgc cgtcgccatg ttcaccgagg
     3781 aggtgggggt cgaccctcag cttcccgacg ggggtgccgg gtaccgggcg cgggtggcgg
     3841 aattgatcgc ggcggggcga gcgttcgccc ggttcgaggc tgacgaggtc gtgttcaagg
     3901 cggagatcgg ggcgatgtcg tccaccgtgg gccagatcca gggcgtctgg gtgcacccgg
     3961 atcggcgtgg gcagggcctc gcggcggccg cgaccgcggc tgtcgtggtg caactacagc
     4021 ggatgggcag gatcgccagc ttgtacgtca acgcctataa ccagccggcc cgcgccgcgt
     4081 atcgtcgagt tggcttcacc caggtgggca gctttgccac ggtgctgttc tgatctgacc
     4141 atgttctgca gccgtgctga tcgatgaagg ggcatactcg ccgccgtgcg ccgacaacgt
     4201 ctggtggctg ccgcattggt agcgatcctg acggtgactc ttaccctggt aggggcgctc
     4261 ctcgctggtt gcgggatctt cgggtctgac ccgcgtgacg cagcgaccgc gtttctggac
     4321 gcggtcgccc gcggggacgc cgccgcagct gggcggctga ccgacaatcc agttgccgcc
     4381 accgagctga tccggcaggt tcgcgatgaa ctgaaaccgc agcgggtgca gctcgtcgcg
     4441 ggtgatgtcc attccggcga ccacgtcgcc tcggcgtcct acgtcgcgga ctgggatctc
     4501 ggccggggcc ggcaatggcg gtactcggac accttcgagc tggttcccgc agacaacagc
     4561 tggtcggtcc ggtggtctcc ggcggtgctg cacccgcgct tgtccgccga gcaacggctg
     4621 gcggtacgtg aggtgccggt cgatccgcct ccagtggccg accgctccgg ggcgcccttg
     4681 ctgacatggc aaaccgtagt caccgtcgcg ctggaccgca gcaagacgcc ggatctgccc
     4741 ggggtggccg cccaactggc ggccgccctg ggacaattcg acccccagat cacccagcag
     4801 tcgatcatcg cgggagccaa cgcggccccg gccggagtgc ccagtgcggt ggccgtgctt
     4861 cgtgaacggg attaccaatc ggtgcgggaa cggatccacg agctgcccgg cgtcagtttc
     4921 cccagccagc agcagttgct gggacccgag cacgactttg cca
//
LOCUS       DASVXZ010000270         1538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_119282, whole genome shotgun sequence.
ACCESSION   DASVXZ010000270 DASVXZ010000000
VERSION     DASVXZ010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119282"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..485)
                     /locus_tag="VF788_05475"
     CDS             complement(114..485)
                     /locus_tag="VF788_05475"
                     /inference="COORDINATES: protein motif:HMM:NF021486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HEX8933635.1"
                     /translation="MRDRQLFDVQRARGLLPEVRRRVDALIEVRADLTELSADLRRFG
                     SSALGGLAEMKALQARLDHMLEWFSAQGIEVKGLAPVLVDFPAELDGESVRLCWLEGE
                     TELAWYHRSDLGLAGRRRLPS"
     gene            complement(521..1006)
                     /gene="bfr"
                     /locus_tag="VF788_05480"
     CDS             complement(521..1006)
                     /gene="bfr"
                     /locus_tag="VF788_05480"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HEX8933636.1"
                     /translation="MRGDDEVIALLNEQLTRELTAINQYFLHAKMQANWGFTKLAEHT
                     RHESIDEMKHAERITERILFLEGLPNYQKLLALNIGQTVKEQFDADLAVEMDAVNALR
                     PAIALCREKGDVTTANIFEDILADEEEHIDYLETNLELMETLGEKLYLSQLVERPPTN
                     G"
     gene            complement(1135..1329)
                     /locus_tag="VF788_05485"
     CDS             complement(1135..1329)
                     /locus_tag="VF788_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX8933637.1"
                     /translation="MYVCICRAVTEAAVRGCIADGARTIKDVVKRCEAGTGCGTCVSK
                     ILDLLGTGASELGHPLQRSA"
BASE COUNT          270 a          490 c          503 g          275 t
ORIGIN      
        1 taagggtgca ctgaagcgcg ctagcaggca gggcgcgcag cgcggtgcgt agccacggcg
       61 ggtcagtgac aggaaggtga cccaaccgcg ttctgcggtg gacgggaagt cggttaggag
      121 gggagccggc ggcgtccggc caggcctagg tcggagcggt ggtaccaggc cagctcggtt
      181 tcgccctcca gccagcacag ccggaccgac tccccatcca gctcagcggg gaaatctacg
      241 aggaccggcg cgaggccctt gacctcgatt ccctgggcgg aaaaccactc gagcatgtgg
      301 tctagccggg cttgcagcgc cttcatctcc gcgaggccgc cgagcgccga cgagccgaag
      361 cggcgcaggt ccgcggacag ctcggtgagg tctgcccgaa cctcgatcag cgcatcgacc
      421 cgccggcgca cctcgggcag cagaccccga gcgcgttgaa cgtcgaacag ttggcgatca
      481 cgcacgctgg caaccgtagt cgcgcccgcg gatgtcccgg tcagccgttg gtgggaggcc
      541 gctccacgag ctggctgaga tacagcttct cgcccagcgt ctccatcaac tcgaggttgg
      601 tctcgaggta gtcgatgtgc tcctcctcgt ccgcaaggat gtcctcgaag atgttggcgg
      661 tggtgacatc acccttctcc cggcacagcg cgatggcggg acgcagcgcg ttcacggcgt
      721 ccatctccac ggccaagtcc gcatcgaact gctccttcac cgtctgcccg atgttcagcg
      781 ctagcagctt ctggtagttc ggcaggcctt ccaggaacag gatgcgctcg gtgatccgct
      841 cggcgtgttt catctcgtcg atggactcgt gccgggtgtg ctcagcgagc ttggtgaacc
      901 cccagttggc ctgcatcttg gcgtgcagga agtactggtt aatggcggta agttcgcggg
      961 tgagttgctc gttgagcagt gcaataacct catcgtcgcc gcgcatgaag cgtcaaaccc
     1021 cctctgggtc agttgtgatg atcacaaccg taccgatgtc cggagggctt gtcattgaag
     1081 gtgaggctcg cctggccagg gcatataaag atcgttgagc ctaaagctcg cgaatcaggc
     1141 gctgcgctgg agggggtggc ccaactcgct cgcgccggtt cccagcagat caaggatctt
     1201 gctgacgcag gtcccgcacc cggtaccggc ttcacagcgc ttgacaacat ccttgatggt
     1261 tcgcgcgccg tcggcgatgc atccgcgcac cgcagcctcg gtcaccgcgc ggcagatgca
     1321 aacgtacatg gcaccgtcgc cctcgatcga gtgattaggc aaggctaagc acaacagatc
     1381 atcggactgg cgtctaggcc ttcacccgtc ctgacgccgc acggtggttg tccgtcgcca
     1441 ggcggttcac tccatccgcc cggagttcag gagtgggtga gtgctcgggt ggggcgacga
     1501 ccgatgccac ggacctcgaa gccgacccgg cgcagcac
//
LOCUS       DASVXZ010000271         4761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_552632, whole genome shotgun sequence.
ACCESSION   DASVXZ010000271 DASVXZ010000000
VERSION     DASVXZ010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4761
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552632"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..837
                     /locus_tag="VF788_05490"
     CDS             <1..837
                     /locus_tag="VF788_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEX8933638.1"
                     /translation="ATISEELDLHRLAVEDAVQERQRPKLDRYDSHLFVTAYAVALDV
                     TTGELETFEVAVFVTHNALVTVRKSDQFDINGVVARWDASADLAKYGVSFLLHGLLDF
                     VVDGHFSAVQTLDDEIEALEDLLFDDKRPEMAVQRRSFELRKSLVQLRRVVLPMREVV
                     NSLMRRDLHIVDEAMAPYYQDVYDHVLRATEWTESLRDLVTTILETNLTIQSNRLNVI
                     TKQVTSWAAIIAVPTAVTGFYGQNVPYPGFGHESGFYASTIVIVVLSVGLYVLFRRRD
                     WI"
     gene            908..4168
                     /locus_tag="VF788_05495"
     CDS             908..4168
                     /locus_tag="VF788_05495"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEX8933639.1"
                     /translation="MAAYVPPPRDPADLFAPLGTQAVAGASAGSEHLERPSIDALLDR
                     AASSRISVVIGAAGWGKTAAVESWSRGRPTAWLRYEDHEGAADRLLSRLSAVLRGHLP
                     APIEDMTVLNTDQVESAAAAISLRLGRFLRKDLVLVLDDLHVLQPEGEAAQAVKILCQ
                     RAPERLHLVLISRGELPFSLQRLRGRGLVKEIYASDLAFDVIDVEALLRRTVGKHPAG
                     LAGRVWRRTGGWPAAVHCAVEMLRVAGWDQRLAAVDRLSHPGERFHAYVAEEVMGAAP
                     GWVQQLLRRLAIVGEVRTTDKATALADLSRQGLVQRSGPDGTWSLLHPLRAYFEHEAA
                     PGADERVALHVTAAKEYVGLGAQADALRHLLAAGDHSACAAILVDHGDAMVERGRLDV
                     VLEATRLPAEYLDDPRIQRVFGLAQQVCGQWTQALVHFQRAGHDGQQLTPALAWRVGW
                     MAFAIGEFTEVHAIAQRTRLDRRDTVDETRVLTLTATAHWMCGDVGSLRKAALQARAA
                     ARQCGDPRARSSAHQALALLAAAEGDWRQADAHCAEALRNAEASEDLLGLTWIRACRA
                     MHHFEAGAPQHALEDAQIALSLSERCENPFLIAHALTTRGRARARLGALDTAAGDFAT
                     AIDLFQRLGSRFLAWALCGLGDLHRNRGQVAQARAAYEEALTLAEPYHDVFGLTCALA
                     GLARIDAADDPQRAWERADRAVELGAALRKVPTLLARGWITLMAGDRAAASADGDRAA
                     VAARQRRDKPGLAEAITLSVLASRDPAMAGNALREAIDIWQETGCRPEEAATRIVAAR
                     IGARIPHLDAFRADQILRDHGIDLDSRRVAGPLSVLVRCAPAVSIQTLGEFRVTRDGQ
                     PIPNTAWQSKKARDLLKILVARRRPAPRDQLMELLWPGVGPTVAGNRLSVLLSTVRDV
                     LQPQLGGETPLAATDGAVSLNRAQVSIDVEDFLARANAAFDAYRTGEPDATTQLLAAI
                     AAHTGDFLENDPYQEWASAIAEEVRAAHIALLRALTTRLRNAGATDDAVRYTLRLLEQ
                     DTYDEEAYRTLIGVLFHAGRLGEARRHYQNYVRRMAEIDVRPHSFSEMTSQEMITR"
     gene            complement(4165..>4761)
                     /locus_tag="VF788_05500"
     CDS             complement(4165..>4761)
                     /locus_tag="VF788_05500"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase domain-containing protein"
                     /protein_id="HEX8933640.1"
                     /translation="NRFNEQPIESMEQLVGLLLDALASYFSRPFALFGHSMGALIAFE
                     LTRALRPSGVAPVHLFASGCQAPHLPSRSPDWHTLPDAEFIAKIESLGGIPPELLVES
                     HFLDLMLPTLRSDCTLAETYVCRPQPPLSCPVSAFGGLLDEEVFPEDVHAWSQHTTGP
                     FRAHLLPGDHFFVNTALVDLLGLVVSELEPASTQRRER"
BASE COUNT          797 a         1525 c         1624 g          815 t
ORIGIN      
        1 gccaccatca gcgaggagct ggatctgcac cgcctcgctg tcgaggatgc cgtccaggaa
       61 cgccagcgcc ccaagcttga ccggtacgac agccatctgt tcgtcaccgc ctacgccgtc
      121 gcgctggacg tgaccaccgg ggaactggag accttcgagg tggcggtttt cgtcacccac
      181 aacgcattgg tcacggtgcg caaatcggat cagttcgaca tcaacggtgt ggtcgctcgc
      241 tgggatgcct cggcagacct ggctaaatat ggggtctcgt tcctgctgca cggcctgctc
      301 gacttcgtgg tcgacggtca cttcagcgcg gttcagaccc tcgatgatga gatcgaagca
      361 ctcgaggact tgctcttcga cgacaagcgc cctgagatgg ccgtgcaacg gcggtcgttc
      421 gagctgcgaa agagcctagt gcagctacgc cgggtcgtgc tgccgatgcg ggaggtcgtg
      481 aactcgttga tgcgccgtga cctgcacatc gttgacgagg cgatggcgcc ctactaccag
      541 gatgtgtacg accatgtgct gcgcgccacc gagtggaccg agagcctgcg ggatctcgtg
      601 acgaccatct tggagacgaa cctgaccatt caaagcaatc gcctcaatgt gattaccaag
      661 caggtcacca gctgggctgc catcatcgcg gtgccgaccg ccgtcaccgg cttctacggg
      721 cagaacgtgc cttacccggg ttttgggcat gagtccggtt tctacgcctc caccatcgtg
      781 attgtggtgc tctcggtggg gctgtatgtg ctgttccgcc ggcgagactg gatctgaccg
      841 tcgcgcagcg gcactgtcag atctttcccg gtgaagaatc gggagatcgg ggtacgttcg
      901 aggggtggtg gccgcctacg ttcctccgcc gagagatccc gctgatctat tcgcaccgtt
      961 gggaacgcag gcggtcgcgg gagcgagcgc gggtagcgag caccttgagc gtccctcgat
     1021 tgacgcccta ctggaccgcg ccgcgagtag ccggatcagc gtggtgatcg gtgcggccgg
     1081 ctggggcaag actgctgcgg tggagagctg gtcccgcgga cgtccgaccg cgtggctgcg
     1141 gtatgaggac catgaaggtg ccgcggaccg cctgttgagc aggctgtctg cggtgttgag
     1201 gggccacctg ccggcaccga tcgaggacat gacagttctc aacaccgacc aggtggaatc
     1261 cgctgccgca gcgatcagtc tcaggctggg aagattcctg cgcaaagatc tcgtgctggt
     1321 cctcgatgat ctgcacgtat tgcagccaga gggcgaggcc gcccaagccg tcaagattct
     1381 ctgccagcgc gcgccggagc gtctgcacct agttctgata tcccgcggcg aactgccgtt
     1441 ctccctgcaa cggctgcggg gacgcggtct cgtcaaggag atctacgcgt cggacctcgc
     1501 cttcgacgtc attgatgtcg aggcactgtt gcgcaggacc gtgggaaagc atccagccgg
     1561 tttggccgga cgagtgtggc gacgcaccgg tgggtggccg gcggccgtgc actgcgccgt
     1621 cgagatgctg cgggtggctg ggtgggatca gcgtttggcg gcggtggacc ggctgtctca
     1681 ccccggagaa cgattccatg cctatgtggc tgaggaggtg atgggcgccg cgcccggctg
     1741 ggttcagcaa ctactgcgca ggctggcgat cgtcggcgag gtccggacaa ccgataaggc
     1801 gaccgcactc gctgacctga gccgtcaggg cctcgtgcag cgcagcggcc cagacggtac
     1861 ttggtcgctg ctacacccgc tgcgtgccta cttcgaacat gaggcggcgc cgggcgccga
     1921 cgagcgagtg gccctgcacg tgacggcagc caaggagtac gtcgggctcg gagcacaggc
     1981 cgatgcccta cgacacctgc tggcggccgg tgatcactca gcgtgcgccg ccatactggt
     2041 tgatcatggt gatgcgatgg tggagcgcgg ccgactcgat gtcgtgctgg aagccacccg
     2101 gttaccggcc gagtacctcg acgacccgcg gatccagcga gttttcgggc tggcgcagca
     2161 agtatgtggc cagtggaccc aggcgctggt gcatttccag cgagccggcc acgacgggca
     2221 gcaactaacg cccgcactgg cctggcgggt cggctggatg gctttcgcca tcggtgagtt
     2281 caccgaggtt cacgcaatcg cccagcggac ccggctggac cgcagggaca ccgttgatga
     2341 gacacgggtg ctgacgttga ctgctaccgc ccactggatg tgcggcgatg taggaagtct
     2401 gcgcaaggcc gcgcttcagg cacgtgccgc ggctcgccag tgtggcgacc cccgcgcgcg
     2461 gtccagcgcc caccaggcct tggccctgct ggccgccgcc gagggtgact ggcggcaagc
     2521 cgacgcccac tgcgccgagg cgctgcgcaa cgccgaggcg agcgaagacc tgctcgggct
     2581 gacctggatc agagcgtgcc gcgcgatgca ccatttcgaa gcgggtgcac cccagcatgc
     2641 gctggaagat gcccagatcg cgttgagcct cagcgagcga tgcgagaacc cgttccttat
     2701 cgcgcatgcg ctcaccaccc gcggccgggc tcgggcacgc ctgggcgcct tggacaccgc
     2761 agcgggtgat ttcgccaccg cgatagacct gttccagcgc ctcggttccc gattcctggc
     2821 ctgggcgctg tgcggcctcg gtgacctgca ccggaaccgg ggtcaggtgg ctcaagcgcg
     2881 ggccgcctac gaggaggcgc tgactctcgc cgagccctat cacgacgtgt tcggtctcac
     2941 ctgcgcgctg gccggtcttg cccgcatcga cgcagccgat gatccacaac gggcttggga
     3001 gcgcgcggac cgcgccgtgg agttgggtgc agcactgcgg aaggttccca ccttgctggc
     3061 ccgcggctgg atcacgttga tggccgggga tcgggcagct gcctcggcgg atggcgatcg
     3121 agctgcggtg gccgcgcggc aacggcggga caagccggga ctggctgagg ccattacctt
     3181 gagcgtgctg gcctctcgcg atccagcgat ggcgggcaac gccctccggg aggctatcga
     3241 tatctggcag gaaacgggct gccgcccgga ggaggccgcg acgagaatcg tggccgcccg
     3301 catcggcgcg cgcattccgc acctcgacgc cttccgtgcc gatcagatac tccgcgacca
     3361 cggcatcgac cttgattcgc ggcgcgtcgc cggaccgctc agcgtgctgg tccgttgcgc
     3421 acccgcagtg tccatccaga cgctggggga attccgggtg actcgtgatg gacagccgat
     3481 tccgaatacc gcatggcagt ccaagaaggc ccgtgacctc ttgaagatcc tggtcgcccg
     3541 acgccggccc gccccccgtg atcagttgat ggagttgttg tggccggggg tgggcccgac
     3601 ggtggccggc aaccgcctgt ccgtactgct gtccacggtc cgcgatgtac tgcaacctca
     3661 acttggcggg gagactccct tggcggccac cgatggcgcg gtgtcgctga accgtgccca
     3721 ggtcagcatc gacgtcgagg atttcctcgc ccgggccaac gccgcgttcg acgcctaccg
     3781 gacgggagag ccggatgcga ccacgcagct ccttgcagcc atcgccgctc acactggcga
     3841 tttcctcgaa aacgacccgt accaggagtg ggccagcgcg atcgctgagg aggtgcgggc
     3901 tgcccacatc gcgctgcttc gggccttgac cactcggcta cgcaacgccg gcgccaccga
     3961 cgacgcggtg cggtacacgt tgcgcctgct cgaacaggac acctacgacg aggaggcgta
     4021 ccgcactctc atcggagtcc tgttccacgc aggtcgcctc ggtgaagcac gcaggcacta
     4081 ccagaactat gtccgccgga tggcggagat cgacgtgcga ccccactcgt tctccgagat
     4141 gacgtcacaa gagatgatca cacgctagcg ttcccgccgc tgggtgctgg ccggctcgag
     4201 ctcggagacg acgagtccga gcaggtccac gagtgcagtg ttgacgaaaa aatggtctcc
     4261 tggcagcagg tgggcccgga atgggcccgt cgtgtgttgt gaccaggcgt gcacatcctc
     4321 gggaaacacc tcttcgtcca gcaggccgcc gaaggcggac accgggcagc tgagcggggg
     4381 ttgtggacgg cacacgtacg tctcagccag ggtgcagtcg ctgcgcagcg tgggcagcat
     4441 gaggtcgaga aagtggctct ccaccagcaa ctccggcggg atcccgccca gtgactcgat
     4501 cttggcgatg aactccgcat ccggcagggt gtgccagtcc ggcgagcggc tgggcaggtg
     4561 cggcgcctgg catccggagg cgaacaggtg caccggcgct acgccgcttg gacgcagcgc
     4621 acgggtcagc tcgaacgcga tcagcgcgcc catgctgtgg ccgaatagcg caaacggtcg
     4681 gctgaaatag ctggccagtg catccagcaa caggccgacg agctgctcca tcgactcgat
     4741 cggttgctcg ttgaagcggt t
//
LOCUS       DASVXZ010000272         1519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_552686, whole genome shotgun sequence.
ACCESSION   DASVXZ010000272 DASVXZ010000000
VERSION     DASVXZ010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552686"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VF788_05505"
     CDS             <1..278
                     /locus_tag="VF788_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933641.1"
                     /translation="AQHTDHELPDALETLISDITRRCAQLTDLGHARVIECADRALAA
                     LITHNRALRALCHPIGERHLAVPLDQELKFRTALLKLGYAFPGQPTS"
     gene            complement(288..>1519)
                     /locus_tag="VF788_05510"
     CDS             complement(288..>1519)
                     /locus_tag="VF788_05510"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX8933642.1"
                     /translation="EQAGSRLEITDERTPGEAQEFVFTATLTGPQHDAVDRLRGYDLS
                     VLVAPPGAGKTVIACALIAEHATSTLVLVDRKTLADQWRTQISELLGVKAGQLGGGRT
                     KTRGVVDVAMLQTLARKDDIASLTSGYGLVVADECHHIPAAAFEHAVKQIPARRWLGL
                     TATPYRRDKLDDLITLQLGPIRHTIVHRPPDTAADDQSPQLEFTQPVLVPQPLPVLHV
                     RDTGFRYTGEADPTAPGGMAAIYRDLIADDARTTQVINDVTAALDHGRHCLVLTQWTA
                     HLERLADELRQRGRDPVILRGGMSTKIRRLALARLQEPTDSAPLLVVATGPFIGEGFD
                     CPMLDALFLAAPIAFKGRLVQYVGRILRPYPGKTTAEVYDYHDIDTRVLASSLAKRAP
                     GYLSLGFPAPRASASRR"
BASE COUNT          236 a          472 c          533 g          278 t
ORIGIN      
        1 tggctcagca caccgatcac gagctacccg acgcgctgga gaccctcatc agcgatatca
       61 cccgccgctg cgcgcaactc actgacctcg gacacgcccg cgtgatcgaa tgcgccgacc
      121 gcgcgctggc cgcgctcatc acccacaatc gcgctcttcg tgccctgtgc catccgattg
      181 gcgaacggca tctggccgtc ccgctcgatc aggaactgaa gtttcgcacg gcgttgctga
      241 aacttggcta cgcgtttccg ggacagccca cgtcctgagc gagttaatca ccgccgtgac
      301 gccgatgcgc gaggggcagg gaagccgagg ctgagatagc ccggcgcacg cttggccagg
      361 gacgaggcga ggacgcgggt gtcgatgtcg tgataatcgt agacctcggc ggtggtcttt
      421 cccggatacg ggcgcaggat gcgtcccacg tactgcacga gacggccctt gaaggcgatc
      481 ggtgcggcga ggaacagggc atccagcatc gggcagtcga atccctcacc gatgaacggg
      541 ccggtggcca cgaccagcag cggtgcgctg tccgtgggct cttgcaggcg ggccaaagcg
      601 aggcgccgga tcttggtgct cattcctccg cgcaggatga ccggatcgcg cccacgttgg
      661 cggagttcgt cggcgagtcg ctcgaggtgc gctgtccact gggtgagcac gagacagtgc
      721 cgaccgtggt ccagcgcggc tgtcacgtcg ttgatcacct gagtggtgcg ggcatcgtcc
      781 gcgatgaggt cccggtagat ggcggccatc cccccgggcg ctgtggggtc ggcttcaccg
      841 gtgtatcgga atccggtgtc gcgcacgtgc agtacaggca acggctgtgg cacgagaact
      901 ggctgcgtga attccagctg tggtgactgg tcatcggcgg cggtgtccgg tgggcggtgg
      961 acgatggtat gccggatcgg gccgagctgg agtgtgatca ggtcgtcgag tttgtcccgg
     1021 cggtagggcg tggcggtcag tccgagccag cggcgcgctg ggatctgttt gacggcgtgt
     1081 tcgaacgccg ctgcggggat gtggtggcat tcatccgcaa ctaccagccc gtagccgctg
     1141 gtgagtgagg cgatgtcgtc cttgcgggcc agggtttgca gcatcgcgac atcgactacg
     1201 ccgcgggttt tcgtgcggcc gccaccgagt tgcccagcct tgacgcccag cagctcgctg
     1261 atctgtgtcc gccattggtc ggcgagggtt ttgcggtcga cgagcacgag ggtcgacgtc
     1321 gcgtgctcag cgatcaacgc acacgcgatc acggtcttgc ccgctcccgg cggagcgacc
     1381 agcacgctca ggtcataccc gcgcaagcga tccacagcgt cgtgctgtgg tccggtcagg
     1441 gtggcggtga atacgaactc ctgtgcctcg ccgggtgtcc gttcgtcggt gatctccagt
     1501 cggctaccgg cctgctcgg
//
LOCUS       DASVXZ010000273         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_477750, whole genome shotgun sequence.
ACCESSION   DASVXZ010000273 DASVXZ010000000
VERSION     DASVXZ010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477750"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            456..1901
                     /locus_tag="VF788_05515"
     CDS             456..1901
                     /locus_tag="VF788_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NF041680 family putative transposase"
                     /protein_id="HEX8933643.1"
                     /translation="MRHRSGLGAHPHPASLDDLRRFREVFYDCLLARADALFEVTDAL
                     LCVEGAVKSLVELTLTAEHRRGHGALYDGLNCGRLDTDRLRTELACLPLPRAGDGRIV
                     LAVDVSPWLRSDASTSAERLFCHVYGRAKSVAQLVPGWPYSFVVALESGRSSWTGVLD
                     ALRLGPTDDATAVTADQLRNVVERLISAGHWQPGDPNILIVMDSGYDVTRLAYVLADL
                     PVVVLGRIRSDRVLLLPKPPRTPGTRGRPSKHGTEFALARPDTWPEPAHTTTTETTRY
                     GTATARGWDRLHPRLTHRSCWLGHEGELPVIEGTLLRLEVDHLPGDRNPDPVWLWSSA
                     TGATAADIDCWWQAYLRRFDLEHTFRLFKQTLGWTRPKIRCPEAADRWTWIVIAAHTQ
                     LRLARPLAEDLRRPWERPAAPDRLTPARVRRAFRNIRPRTALPARAPKPAKPGPGRPP
                     GSRNRRPAARYDVGKTVKRDLTITEHRNRNG"
     gene            2016..2620
                     /locus_tag="VF788_05520"
                     /pseudo
     CDS             2016..2620
                     /locus_tag="VF788_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612285.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT          408 a          859 c          869 g          484 t
ORIGIN      
        1 gccgttggcc actgatttcc acgaatcgac gcgctaacgt ccatgcatga gtgcccgctc
       61 gtctttctgc agtgcttgca ctgattcacc gggagcacgt ccttccacgg tggctattgt
      121 ccagatgggc cggccccgca cacttcaccg tggagatcaa cggggcgccg ctgctgaccg
      181 cgacgaccta cctgtgacct ccggccacat gctgcgcgtg tgctgcagat ctgcaagaca
      241 tgcaacctca ggttgacgct cgggcagcgg atcatgagct gcccgactga ggtttgatca
      301 atgaagccgt ccttagcttg ttctttaacc tccctgatct gggtttttgt gctgatggtg
      361 gcgtgtcggc atgacatggg acggccaccg cttgatcctc ttcgggttcc taccacagat
      421 ctcgaaggcg gagggcggtg gccgaggtgg ccattgtgcg gcacaggagt gggttgggtg
      481 cacacccgca cccggcgagt ttggatgatc tccgccggtt tcgtgaggtg ttctacgact
      541 gtctgcttgc gcgggcggac gcgttgttcg aggtgactga cgcgttgctg tgcgtcgagg
      601 gtgcggtgaa gtcgctggtc gagctgacgc tgacggccga gcaccggcgt ggccatggtg
      661 ccctgtacga cgggctgaac tgtggtcgcc tggacaccga ccggctgcgg accgagctgg
      721 cctgcctgcc gctgcccagg gctggggacg gacggatcgt gttggccgtc gatgtcagtc
      781 cgtggctgcg ctcagacgca tcaaccagcg cggaaaggtt gttctgccat gtctacgggc
      841 gggcgaagag tgttgctcag cttgtccccg gctggccgta ttccttcgtg gttgcgttgg
      901 agtccgggcg cagctcgtgg accggggtac tcgacgccct ccggcttggc ccgaccgatg
      961 acgctacggc ggtgaccgcc gaccagctcc gtaacgtggt cgagcggctg atctccgccg
     1021 ggcattggca gcccggtgat ccaaacatct tgatcgtgat ggactccggt tacgacgtca
     1081 cccggctggc gtacgtgctg gctgacctgc ccgtcgtggt gctcggccgg attcgttccg
     1141 accgagtgct gctgttgccc aagccacccc ggacgcccgg cacccgcggc cgcccgtcca
     1201 agcacggcac cgagttcgcc ctggcccggc ccgacacctg gcccgaaccc gcgcacacca
     1261 cgaccaccga gaccacccgc tacggcaccg caaccgcccg cggctgggac cggctccatc
     1321 cccggctgac tcatcgcagc tgctggctcg gccacgaggg agaactaccg gtcatcgagg
     1381 gcaccctgct gcgtctggag gtcgaccacc tgcccggcga ccgcaatccc gacccggtat
     1441 ggctgtggtc ctcggccacc ggcgccactg ccgccgacat cgactgctgg tggcaagcct
     1501 acctgcgccg attcgaccta gagcacacct ttcggctgtt caagcagacc ctcggctgga
     1561 cccggcccaa gattcgttgc cccgaggcag ccgatcgctg gacctggatc gtcatcgccg
     1621 ctcacaccca actccgcctc gcccgccccc tcgccgagga cctccgccga ccctgggaga
     1681 ggcccgccgc tcccgatcga cttacccccg cccgagtacg acgcgcattc cggaacatcc
     1741 gcccgaggac cgctctgccc gcccgcgccc caaaacccgc caagccaggc cccggacgcc
     1801 cacccggctc cagaaaccgc agacctgcag cccgctacga cgtcgggaag accgttaaac
     1861 gcgacctcac cataaccgag caccgcaatc gcaatggtta aaaatcaagc tgagaacgtg
     1921 tcgggaaagt tgatcggtga cggcgtgtcc tcccgaggat cttgttaagg cgtgatcatg
     1981 ttgggcggat gagtgatcat gctggtcgtc atggttatcc gtcggatctg accgatgcgc
     2041 agtgggcgct ggtggagccg ctgctgccac cggagcgggg cggacgcggg tggggacgac
     2101 cgctgactca tccccgtcgg gagatcgtca acgcgatcct ctatgtggct cgtgcggggt
     2161 gttcctggcg gcagttgccg ggtgacctgc caccttgggc gacggtgtat gactacttcg
     2221 cagcctggag ggccgatggc accgtcgact gcatccatga tcggctgcgg gatgcggtgc
     2281 gggatgaggc gggtcgcgat ccgatgtcct cagcggggtc ggtcgactcc caatcggtga
     2341 agggtgcgga taccgtcggt gcggctagtc gggggtatga cgcaggaaag aagatcaacg
     2401 gtaggaagcg tcatatcgtg gtcgacaccc tcgggttgct gctggtggtg ctggtcaccg
     2461 ctgcgtcggt gcaggatcgc gacggtggtg cccaggtgct ggatcgggca cggatggcga
     2521 tgccctcgct ggcgctggtc ttcgccgacg gcggctacgc cggacggttg gtgcgctggg
     2581 cgcgacgcgt gctgcgcacc gtggtcgaga tcgtgcgcaa
//
LOCUS       DASVXZ010000274         2042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_29803, whole genome shotgun sequence.
ACCESSION   DASVXZ010000274 DASVXZ010000000
VERSION     DASVXZ010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29803"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..448)
                     /locus_tag="VF788_05525"
     CDS             complement(176..448)
                     /locus_tag="VF788_05525"
                     /inference="COORDINATES: protein motif:HMM:NF015522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933644.1"
                     /translation="MDAFVRLPDLASLAVGGAVVDANDDFFADRAALIMPAPTQPRAE
                     FGHRGKVYDGWETRRRQEPGADYAIIRLGVPGIVRGVVVDTAHFRG"
     gene            complement(448..1026)
                     /locus_tag="VF788_05530"
                     /pseudo
     CDS             complement(448..1026)
                     /locus_tag="VF788_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
     gene            complement(1036..1305)
                     /locus_tag="VF788_05535"
                     /pseudo
     CDS             complement(1036..1305)
                     /locus_tag="VF788_05535"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
     gene            complement(1343..2005)
                     /locus_tag="VF788_05540"
     CDS             complement(1343..2005)
                     /locus_tag="VF788_05540"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933645.1"
                     /translation="MHASNPCQQHHHRAEERQCPRGPTRGASNRDRRHRAPGSTPDIA
                     PAVAGSTGSTTIQTNTAQFLSADIIGTTDIWATTNNRNLTAGSFFDQDRANSAAKVVV
                     LGPSVTRALFGRDPSAALNQTVQINHALFQVIGVMASYGQQQDNTAVMRLNTARRSSS
                     AAPAPNSTKSPCKPFDRLTSPQPWQRSPESSTLATTSLTPECGTSKFNPKNPDCKALT
                     RS"
BASE COUNT          327 a          635 c          737 g          343 t
ORIGIN      
        1 tatcgacgac gacgtcgcgc agccgtgccg tcccggccag ccgggccacc acccagtcgt
       61 tgccgccctc gcgtcaccga gcggggcacc agcgtggtcc actccacggt cgccagctcg
      121 acggtgctgg ggaagttctc cagcgcggtc gcgtggccga gatatccggg ggtagttacc
      181 cccggaagtg agcggtgtcc accacgacac cacgcacgat gccggggacg ccgagccgga
      241 tgatcgcgta gtcagccccc ggctcctggc gccggcgggt ctcccacccg tcgtagacct
      301 tcccccggtg gccgaactcc gcccggggct gcgtcggagc cggcatgatc agcgcagccc
      361 ggtcggcgaa gaagtcgtcg ttggcgtcga ccacagcccc gcccaccgcg agggaggcga
      421 gatccggcag ccggacgaac gcgtccatca tgccgacccc ctgctcagca aggcgccgca
      481 cgcaggtccg tcgacgtcga tgcggcgccc gcgcagccac gtctggcgaa ccgctccgcg
      541 cagcacccgg ccgtggtacg gagtgatcgg gtggcggtgg gccagttgcc gggagtccac
      601 gacgaacgcc tgatcggggg cgaggaagca taggtcagcg tcgaagccca cggcgatccg
      661 acccttccgg gccaacccgg ccagccgcgc cggccgatca gccatccagc tgacaacatc
      721 cgaaagctga tgcccgcgcc gccgcgccgc tgaccacact gccggcaagc cgacctgcaa
      781 cgacgcgatc ccgccccatg ccgcgccgaa gtcaccagtg tcacggtgct tgagcggcac
      841 cggggacggc gagtgatccg acacgaccgc gtcgatcacc ccgccggcca accctgccca
      901 cagctgctcg cggttcgccg cctcccgaat cggtgggcag catttgaact cagtggcacc
      961 gtcgggcacc tcctcggcgg tgaaggtcag gtagtgcggg caggtctcca cggtcagccg
     1021 cacccccaca gtgcgttatt gatatcggag ggcctcgatg gggcgtaggc tcgcggcgcg
     1081 ataggccggg tagccgccgg tgatgagccc gatcgcgaga ctgatcgtga aggccaccac
     1141 cccgggaagg gcggataaga cagggctgaa attggccagg gcaccggagg cgggatcgac
     1201 ggccggggcg atgagcctga ctagctcgga tagcccgatc cccactccca caccgaggag
     1261 accactgagg ctggcgagga cagtggattc caggaggaac tgtccgagga cggcgcggct
     1321 ggggtgaaca ggacgagaat tttcacgatc tggttaaagc tttgcagtcg ggatttttgg
     1381 gattgaattt ggaagtcccg cattccgggg tcagcgatgt ggtggcgagt gtcgaggatt
     1441 cgggtgatct ctgccatggc tgcggggacg ttagcctgtc gaaaggcttg cacggtgatt
     1501 tggttgagtt gggtgctggt gctgccgatg aggagcggcg ggcggtgttc aaccgcatga
     1561 ctgcggtgtt gtcttgttgc tgaccgtagc tggccatcac tccgatgact tggaaaagtg
     1621 cgtggttgat ctggactgtc tggttcagcg ctgcgctggg gtctcggccg aacagggcgc
     1681 gcgtgacgct ggggcccagg actaccacct tggcggccga gttggcccgg tcctggtcga
     1741 agaacgatcc cgcggtgagg ttgcggttgt tcgtggtggc ccagatgtcg gtggtgccga
     1801 tgatgtccgc tgagaggaac tgggctgtgt tggtttggat ggtggtggag ccggtggagc
     1861 ctgcgacggc aggggcgatg tcgggtgtgc tccctggagc gcggtggcgt cggtctcggt
     1921 tagaggctcc gcgggtgggg ccccggggac attggcgctc ttcggcacga tggtgatgtt
     1981 gttggcacgg gttcgatgcg tgcatcgacg gagttcttac cccttggccg caggtggcta
     2041 gc
//
LOCUS       DASVXZ010000275         3291 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_298754, whole genome shotgun sequence.
ACCESSION   DASVXZ010000275 DASVXZ010000000
VERSION     DASVXZ010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298754"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VF788_05545"
     CDS             <1..636
                     /locus_tag="VF788_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEX8933646.1"
                     /translation="SFVVIALQSAFNSVWAVPHAQRPGFGAQMRRGLVALGAIALGLV
                     VSTVISSYVTGTGTGTSLDMVARFAGYLIAVALDVGLFFVAFRLLTDRDVSTRDVLPG
                     ALLSGIAFWLLQQLSSLIIFRYLQNAERIYGNFATVITMLSWFYLQSVVTLVGAQLNV
                     VLKERLHPRGLATAPVTEADHRAYDAYVKERTYHPNQRVHTDFHQHDPDEE"
     gene            814..2121
                     /locus_tag="VF788_05550"
     CDS             814..2121
                     /locus_tag="VF788_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX8933647.1"
                     /translation="MDSGNTAFVLGSAALVMLMTPGLAFFYAGMVRARSALNIMMMSM
                     VTLGVVGLIWVLFGFSLSFGDSHAGLIGGFGFAGLRVPGMVVGNGIPLAAFAMFELMF
                     AIITAALVSGAIADRARFWSWTVFIALWTVAVYVPLAHWIFAFDGFSGAHGGWLANQL
                     GVLDFAGGTAVEVNSGMSALALALIVGRRRGWPREPMRPHNLPATLLGAGLLWFGWYG
                     FNAGSALAASAVAANAFLATTVAPAAAVLAWLVVEHRLDGRPTSLGAASAVVAGLVGI
                     TPACGYVDTFGAIVIGLACGVVCQLAIRLKYRLGYDDSLDVVALHGVGGAVGLLLTGL
                     FATTAVNSAGANGLFYGGGGGQLGRQAVGVLVAAGYAFVITVGLAWLVRATMGFRVAP
                     EVEADGIDEAEHAENAYEFSPLTTTGRGTVLPSRPVTHEESAT"
     gene            2118..2456
                     /locus_tag="VF788_05555"
     CDS             2118..2456
                     /locus_tag="VF788_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX8933648.1"
                     /translation="MMLVTAIVKPFVLGDVKVALERLGVLGMTVSEVQGYGRQKGHTE
                     VYRGAEYKVDFVPKIRVEVVVDEARVDKTVDALVEAARTGKIGDGKVWVTPVETVVRV
                     RTGERGLDAL"
     gene            complement(2587..2715)
                     /locus_tag="VF788_05560"
     CDS             complement(2587..2715)
                     /locus_tag="VF788_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933649.1"
                     /translation="MTNDLEVYQRMMDRIDRLRRGEDVSSVPVEEVRAVIRERLGL"
     gene            complement(2731..2898)
                     /locus_tag="VF788_05565"
     CDS             complement(2731..2898)
                     /locus_tag="VF788_05565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6247 family protein"
                     /protein_id="HEX8933650.1"
                     /translation="MARQLRVCVSAALSCRHGHSRRRAHRAEFDHEYKRALVTAAKTM
                     ELAGVHALVEQ"
BASE COUNT          500 a         1075 c         1109 g          607 t
ORIGIN      
        1 tcattcgtgg tcatcgcgct ccagtcagca ttcaactcgg tgtgggcagt ccctcatgcc
       61 cagcgccccg gcttcggtgc gcagatgcgg cgcggcctgg tcgcgctggg cgccatcgcg
      121 ctcggcctgg tcgtcagcac agtgattagc agctacgtca ccggtactgg tactggtacc
      181 agcctcgaca tggtcgctcg cttcgccggg tatctcatcg ccgtcgcact ggacgtgggc
      241 ttgttcttcg tggccttccg tctgctcacc gaccgtgacg tttctacccg tgacgtactg
      301 ccgggtgcac tgctgtcagg cattgccttt tggctgctcc aacagctgtc ctcgctgatc
      361 atctttcgat acctgcagaa cgccgagagg atctacggca atttcgccac tgtcatcact
      421 atgttgtcgt ggttctacct acaaagcgtc gtcaccttgg tcggtgcgca gctcaacgtg
      481 gtgctcaagg aacggctaca cccccgcggc ctggccaccg cccccgtcac cgaggccgat
      541 catcgggctt acgacgccta cgtcaaggaa cgcacctacc atcccaacca acgagtccat
      601 accgacttcc accagcatga tcccgatgag gagtagcagt cccgacagcc ttcaaggtcc
      661 gggaagcact caatccgtat ccgtcatgcc gtacttacgc accggcgcgg aacaccgctg
      721 cgacgtcacc ctagtaggcc gcgaacaccg cacggtcggc gtcgggtgag cagagcgctc
      781 ccattgcggt aaccaacgga cgataatccg gagatggaca gcggaaacac ggcgttcgtg
      841 cttggctctg cggcattggt gatgctcatg acgccgggcc tggctttctt ctacgcaggc
      901 atggtgcggg cccgcagcgc gctcaacatc atgatgatga gcatggtgac gctcggcgtc
      961 gtcgggctga tctgggtgtt gttcggcttc tcgctgtcgt tcggcgactc ccacgccggg
     1021 ctcatcggcg ggttcggctt cgccggcctg cgagtgcccg ggatggtggt cgggaacggt
     1081 atcccgctgg ctgccttcgc catgttcgag ctgatgttcg cgatcatcac cgcggcgctg
     1141 gtgtccgggg ctatcgccga ccgggcgcgg ttctggtcct ggacggtgtt catcgcgctg
     1201 tggacggtgg ctgtctatgt cccgctggcc cactggatct tcgcgttcga cggtttctcc
     1261 ggggcccacg gcggctggct tgcgaatcag ctgggcgtgc ttgacttcgc cggtggcacg
     1321 gcggtagagg tcaactccgg gatgtccgca ctggcgctgg cgctgatcgt gggccggcgc
     1381 cggggctggc cacgcgagcc gatgcgccca cacaatctgc cggccacgct gctcggcgct
     1441 gggttgctgt ggttcggctg gtacggcttc aacgcgggtt cagcgctcgc tgcgagcgcg
     1501 gtcgcggcca acgccttcct cgccaccacg gtcgcgccgg cggccgcagt gctcgcctgg
     1561 ctggtcgtcg agcaccgcct cgacggccgt cccaccagcc tcggcgcggc gtcggccgtg
     1621 gtcgccgggc tggtcggcat caccccggcc tgcggctatg tcgacacgtt cggcgcgatc
     1681 gtcatcgggc tcgcctgcgg cgtggtctgc cagctcgcaa tccggctcaa gtaccggctg
     1741 ggctacgacg actcgctcga cgtggtcgcc ctccacggcg tcggcggagc ggtcgggttg
     1801 ctgctgaccg ggctgttcgc gaccaccgcc gtcaactccg cgggcgcgaa cgggctgttc
     1861 tacgggggcg ggggcggcca gctcggcagg caggccgtcg gggtgctggt ggccgccggg
     1921 tacgcgttcg tgatcaccgt cggactcgcc tggctggtcc gtgccacgat ggggttccgg
     1981 gtcgcccccg aggtcgaggc cgatggcatc gacgaagctg agcacgccga gaacgcgtac
     2041 gagttctcgc cgctcaccac gacgggtcgc ggcacggtgc taccgtcccg cccggtgacg
     2101 cacgaggaga gcgcgacatg atgctggtga ccgcgatcgt caagccgttc gtgctgggcg
     2161 acgtcaaggt cgcgctggag cgcctcggcg tgctggggat gacggtgagc gaggtgcagg
     2221 gctacggccg gcagaaggga cacaccgagg tctaccgggg cgcggagtac aaggtcgact
     2281 tcgtacccaa aatccgggtc gaggtcgtgg tcgacgaggc gcgggtggac aagaccgtcg
     2341 acgcgctggt cgaggcggct cgaaccggaa agatcgggga cgggaaggtc tgggtcactc
     2401 cagtggagac cgtggtccgg gtgcgaaccg gggagcgcgg tctggacgcc ctgtgacgca
     2461 gacccccgcc gcagatctca tcagggcccg cgccgcggcg gtttgcggcc gtactccgat
     2521 ctggacctcg atgggcagag tggcgacttg ctcgagcacg tggtggtcgg aggtgacgcg
     2581 atacacctac agtcccagcc gctcacggat gacagccctg acctcctcca ccggcacact
     2641 cgagacgtcc tcgcctcgcc ggagacggtc aatccggtcc atcatccgct ggtacacctc
     2701 aaggtcgtta gtcacccacg cgcgacgacg tcactgctcc accagcgcgt ggacgccggc
     2761 cagttccatc gtcttggcgg cagtgaccag cgcccgcttg tactcgtggt cgaactcggc
     2821 gcggtgggcg cgccgacggg agtggccatg ccgacacgat agcgccgcgc tgacgcaaac
     2881 tctgagttgc cgcgccaccg gaccaaacca gcgctgaact cgccgtatcc aggggccgag
     2941 agcccacgaa atggcaacag tgcttacccg agcactccac cacccaagcg ctaacaaccg
     3001 gggctctgtt tggtttatgg agttcacacg atcgtcgccg ggcgtcatgt acgtaggtgg
     3061 ctttgctcct cctctttccc agtagtgacg gggccatcgg cccaagcggg ccgtgcgcgg
     3121 gcctcagcag accgtttgtg gatacagaag gagcatgttc atggccatga tcggaggagg
     3181 cagccgtgcc accactggaa tggttgagcg tggtgatgtg ctgggtgcgc tggaacggct
     3241 ccttcaagat gccagggatg gccgaggggg agcgctgttc gtcgtaggac c
//
LOCUS       DASVXZ010000276         2657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_657015, whole genome shotgun sequence.
ACCESSION   DASVXZ010000276 DASVXZ010000000
VERSION     DASVXZ010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657015"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..422)
                     /locus_tag="VF788_05570"
     CDS             complement(171..422)
                     /locus_tag="VF788_05570"
                     /inference="COORDINATES: protein motif:HMM:NF015993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015075 - monoatomic ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation/H+ antiporter complex subunit
                     F"
                     /protein_id="HEX8933651.1"
                     /translation="MNRWLVSAAVLLVVGMLPAVVVAGRGGVLDRLAGLAMAGVVATL
                     EMLLLSEGYQRSSYLDVGLVLATLSLTGSLVFARLVVRQ"
     gene            complement(419..907)
                     /locus_tag="VF788_05575"
     CDS             complement(419..907)
                     /locus_tag="VF788_05575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933652.1"
                     /translation="MAQRRRVLLVEAAVWGVLLWAGYLALVSPLSGGEFILGALLSAI
                     AGGAAVLARRASGSSFAVPRHWVGALLRLPGAVISDTWLLARLVWTRSARRRTIGQLQ
                     RLELAEQPDEFRDTSWQAVAGLLLSLSPGSFVVDSSGHPPTLLVHTIRAEAGPLERVI
                     QR"
     gene            complement(915..1226)
                     /locus_tag="VF788_05580"
     CDS             complement(915..1226)
                     /locus_tag="VF788_05580"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX8933653.1"
                     /translation="MLVTFGTQGWLIALILLGILLVESQLEVHLLQPLIVGRYVRLHP
                     LAIGIAFAVGTVLAGILGAIIAVPTAAIIHQAWPALRGEVPRGEPERTKSRSPHYASV
                     V"
     gene            complement(1222..1489)
                     /locus_tag="VF788_05585"
                     /pseudo
     CDS             complement(1222..1489)
                     /locus_tag="VF788_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003058123.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
     gene            complement(1512..1802)
                     /locus_tag="VF788_05590"
     CDS             complement(1512..1802)
                     /locus_tag="VF788_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933654.1"
                     /translation="MEAPSHDVALLPTSCRPERLGDAETYLDDDRYLHGAKTVAGALL
                     ALALTAVLITSLAGAPNVAWTVLLAVVVAGLIVVNRMPAVRRRGDRRAPTDP"
     gene            complement(1885..>2657)
                     /locus_tag="VF788_05595"
     CDS             complement(1885..>2657)
                     /locus_tag="VF788_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEX8933655.1"
                     /translation="HALAEIANLAPDTHQAYVGRSAFAHKAGLHASAIKVAPELYNHL
                     DPVVVGNSQRVLVTEMAGRASIELKAGELGLDLAGRSAEVGVITARVKDLEARGWSFE
                     AADASFELLLRHEVDEVPPAPPFQLESYRVIVDHTIDAAVVAQATVTVHVAGKRVLAT
                     AEGNGPINALDGALRQALGAHVPWLGSVSLSDYKVRILPGTSGTDAVTRVLVDTSDGT
                     DSWTTVGVHGNVVEASWLALLDAMTYAALRHHGVASTA"
BASE COUNT          517 a          958 c          812 g          370 t
ORIGIN      
        1 gctcagccct tcatgcacca ccagcgcacc gatgatcagc ggagctccca gggacgacgc
       61 cggaccgaga tagtgcaacc gcaggtagga gtcgcgggca accagaagac ccaggctgcc
      121 gaaagccacc ccagcgatcc ccacgatgag caacatgctc tctacgagga tcactgccgc
      181 accaccaggc gggcgaacac aagtgacccg gtcaacgaca gcgtcgccag gaccaaacca
      241 acgtcgagat aggagctgcg ctggtatccc tcggaaagca gcagcatctc caaggtggcc
      301 accacccctg ccatcgccag accggccaac cgatccagaa cccctcctcg accggctact
      361 accaccgctg gcaacatccc gaccaccagc agcaccgccg cactcacgag ccaccggttc
      421 accgctgaat cacccgttcc agcggacccg cttcagcgcg aattgtgtgc accagcaggg
      481 tcggagggtg accgctgctg tcgaccacga agctacccgg gctcagactc agcaacagac
      541 cggcaaccgc ctgccagctc gtgtcgcgga actcgtcggg ctgctcggcc agctccagcc
      601 gctgcagctg ccctatggtc ctccgccgtg ccgaccgggt ccagaccagc cgggccagga
      661 gccaggtgtc agagatcacc gcgccaggca accggagcag tgccccgacc cagtgtcgcg
      721 ggaccgcgaa cgacgatccg ctcgctcgac gcgccagcac cgctgcgccg cctgcgatag
      781 cactcagcaa cgcgcccagg atgaactctc caccggataa tggggagacc agcgccagat
      841 atcccgccca gagcagtact ccccacaccg ccgcctcaac gagcagaacg cgcctccgct
      901 gcgccacccc acgatcaaac cacgctggca tagtgaggtg accgcgattt agtgcgctct
      961 ggctcccctc gcggcacctc accgcgtagt gcgggccacg cctggtggat gatggcggcg
     1021 gtgggtacgg cgatgatcgc tccaagaatt ccggcgagca cagtgccgac ggcgaaagcg
     1081 atcccgatgg cgagtgggtg cagccggacg tagcgcccga cgatcaatgg ctggagcaag
     1141 tgaacctcga gctggctttc cacgagcagg attcccagca ggatcagcgc gatcagccat
     1201 ccctgggtgc cgaaagtgac cagcaccgct aagccgccgg aatatcgaca cagcagcgat
     1261 gaaggaacca gtcagcgggt cgctgtgatc ggcgcagcgc agccagcagc aatccctctg
     1321 tggtcgtgtc agccaccgaa tgcgcggcct cggcgagcat cgccgccgat ccggtcagcg
     1381 ctccggcaac cgccttcatc accgcgatca aggcgttgac cacgagggca acgatgacgg
     1441 tcaacgtgct ctcaccggtg ccgctctcgc caacgtgcca cgagggcaag ccggctgcgc
     1501 ctgcgcgctt gtcacgggtc ggttggcgct cgccggtcgc cgcggcgacg gaccgccggc
     1561 atcctgttca ccacgatgag tccggctacc accaccgcca gcaggacggt ccacgcaaca
     1621 ttcggtgcac cggccagcga ggtgatcagt acggcagtca gggccaacgc caacagcgca
     1681 ccggcaacgg tcttcgcccc atgcaggtaa cggtcatcgt caaggtatgt ctcggcgtcc
     1741 ccgaggcgct cgggacggca actggtgggc agcaacgcta catcgtgaga aggcgcttcc
     1801 acggctctgt ctccttgagg cgaccgtcgt cgggaaacaa cagattcccc cggacaagtc
     1861 gctccaaacc cgacgagcca ccgattaggc ggtactggcg actccgtggt ggcgaagtgc
     1921 cgcgtaggtc atcgcgtcca gcagcgcaag ccaggaggct tccaccacgt tgccgtgcac
     1981 gccgacggtg gtccaggaat cggtcccgtc gctggtgtcc accagcaccc gggtgaccgc
     2041 gtccgtaccg gatgtgccag gcaggatccg caccttgtag tcggagagcg aaacgctccc
     2101 cagccacggc acgtgggcac ccaacgcctg gcgcaatgca ccatccagcg cgttgatcgg
     2161 cccgttgccc tccgcggtgg cgagcacccg cttccccgcc acgtgcaccg tcacagtcgc
     2221 ctgagcgacc accgccgcgt caatggtgtg gtccacgatc acccggtagg actccagctg
     2281 gaatggcggc gcgggaggga cctcgtcaac ctcgtggcgc aacagcagct cgaaagaggc
     2341 gtcggcggcc tcgaacgacc atccccgggc ttcgagatcc ttgacccggg cagtgatcac
     2401 gccgacctcg gccgagcggc cggccaggtc cagcccgagc tcgcctgcct tgagctcgat
     2461 gctggcccga ccggccatct cggttaccag cacgcgctgc gagttgccga ccaccaccgg
     2521 gtccaggtgg ttgtacaact ccggagccac tttgatcgca ctcgcgtgca gccccgcctt
     2581 gtgagcgaag gccgacctcc cgacgtaggc ctggtgggtg tcgggagcga ggttggcgat
     2641 ctcggccagc gcatgcg
//
LOCUS       DASVXZ010000277         4707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_388798, whole genome shotgun sequence.
ACCESSION   DASVXZ010000277 DASVXZ010000000
VERSION     DASVXZ010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4707
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388798"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..932)
                     /locus_tag="VF788_05600"
     CDS             complement(<1..932)
                     /locus_tag="VF788_05600"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEX8933656.1"
                     /translation="MTALKSPIPTTTTARNSATVAGWTLVSRVTGLLRVVVIGAVLGP
                     TYFANAFQTGYVVPNMVFTMIAGPVLAMVVVPGLVHAVAAGGVERAREVLSRVSGWLL
                     AVSAAVVALLMVLSPVVAWTLTFGIPDAGAHARGLWITTLLVLLVAPQVPLYVLLHLG
                     MAAQQARGRFALAAGAQVVENGVLILTVLLAGWYYGTGLDVGQVPVELVIVLGLGSTV
                     AVALHAALQLFGTARVGLLSWPSTRWRHDPETREITRRLLRSVGVAAWPTAAMYVLLA
                     LAGTVPGGTFVVQLSYSVFFALSYISARAVSTAAL"
     gene            complement(958..1875)
                     /locus_tag="VF788_05605"
     CDS             complement(958..1875)
                     /locus_tag="VF788_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933657.1"
                     /translation="MTNPSNVFQYGASESNGRSAAYDETLQVSPGAGEVPPQRSGDRA
                     DSPTEDRGVGPLTTRLALLALTIILLGTAAGLAGALVLPKTYGARAEILYSIGRDQGG
                     DPLKQDRQLSTQLVYLKSRAVLGPVAQKQGRQFKDLDKDVSVQVVDNSNVIQVEAHGA
                     TKLAALQTLQSVMDGYLTLIGQPTGVSRNLDTQLADAKANTAAAETRIQQLTPAVTAG
                     TATQVALNEARAQLVASQDREKAVQARIDELNLTGQTGPDAQLLTPPYSLPDAVFPQP
                     LIAAGTGALIGLIVAGVAVAVSSRRRSRP"
     gene            complement(1872..2987)
                     /locus_tag="VF788_05610"
     CDS             complement(1872..2987)
                     /locus_tag="VF788_05610"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEX8933658.1"
                     /translation="MTGRVPFLDLQSVNNDLREEFDLAWKTVLDHGHFVGGPEVERFE
                     REFATYCGAKACIGVANGTDALELILRGVGIGPGDEVIIPTNTFIATAEAVCAVGARP
                     RFVDVCADTLLIDPDAAAAAINGSTAAIIAVHLYGQMVDPGPISAIAAAHGLALIEDA
                     AQAHGARHQDHKAGSVGIAAGFSFYPGKNLGALGDGGAVITSDLALAEAIRSMANHGR
                     SSTDRYLHDLAGRNSRLDTLQAALLSAKLPRLDADNSLRASAMAAYREMLPPGCTPVL
                     VQPGAEPVYHLAVVQVDDRRKVGDALTAAGIGWGVHYPIPCHEQPALAAVHESVPNAE
                     KMPVAQHAASRILSLPMSPTLSVEQVARVCDVLGGAL"
     gene            complement(2984..4054)
                     /locus_tag="VF788_05615"
     CDS             complement(2984..4054)
                     /locus_tag="VF788_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX8933659.1"
                     /translation="MTFDPDVRVAVVGYGYWGSKHMRVLSSMPGVQVTIVDQDPERIA
                     EARRAYPSAEAAHDLDEVLGRVDAVVVATPPTAHADVALRALRSGRHALVEKPLATTV
                     EDAQQMVDAAAANGVHLMAGHTFEYNAAVWKLKEIIDSGELGRVLYIDAARLSLGKYQ
                     RDCNVIWDLAPHDISIASFLLDEVPRTTWVWAKRHVGNRHADVAYLRLDFEKAATHAF
                     VHVSWLDPCKVRRVTVVGDRKMAVYDDMSDNERVRVYDIGVDPGDPDDHGESHAMPVS
                     YRTGDIVSPFIQFNEPLLVQDSHFIECIRTGAKPNTSGERGLDIVRVLAATDVAEATG
                     RPAFVSGSIDSAGPERVRGVAS"
     gene            complement(4486..>4707)
                     /locus_tag="VF788_05620"
     CDS             complement(4486..>4707)
                     /locus_tag="VF788_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HEX8933660.1"
                     /translation="RDKAANFWPMAILSAGESWHNLHHADPTSARHGVLRGQIDISAR
                     VIWLFEKLGWVWNVRWPTPQRLAKMAIRP"
BASE COUNT          830 a         1558 c         1525 g          794 t
ORIGIN      
        1 agcgcggccg tcgacaccgc ccgagcactg atgtaggaca gcgcgaagaa cacggagtag
       61 gacagctgca ccacgaaggt gccccccgga actgtcccgg ccagcgcgag tagcacgtac
      121 atcgcagcgg tgggccaggc ggcgacaccg accgagcgca gcagcctgcg ggtgatctcg
      181 cgagtctcgg ggtcatgccg ccagcgcgtt gatggccagc tcagcaaacc cacccgggcg
      241 gtgccgaaaa gctgcagcgc ggcgtgcagg gcgacggcga cggtgctgcc cagcccgagc
      301 acgatcacca gctcgaccgg cacctgcccg acgtccagac ccgtcccgta gtaccaaccg
      361 gccagcaaca ccgtcaggat caggaccccg ttctccacca cctgtgcgcc cgccgccagc
      421 gcgaaccggc cgcgagcctg ctgtgcggcc atcccgaggt gcaacagaac gtacagcgga
      481 acctgcggtg cgacgagcag gaccagcagc gtggtaatcc acaggcctcg ggcgtgcgca
      541 ccggcgtcgg ggataccgaa ggtcagcgtc caggccacca ccggggaaag caccatcagc
      601 aatgcgacga ctgccgccga gacggcaagc agccatccac tcacccggct cagtacctcc
      661 ctggcccgct ccacgccgcc ggctgcgacg gcgtggacca ggccgggtac taccaccatt
      721 gccaagaccg gcccggcaat catcgtgaac accatgttcg ggacgacgta gccggtctgg
      781 aaggcgttgg cgaagtaggt cgggccgagt accgccccga tcaccacgac tcgtagcagc
      841 ccagtgactc tgctgaccag cgtccagccc gcgacggtgg ctgagttccg agcggttgtg
      901 gtggtgggta tggggctctt gagtgctgtc accgttgcgg tggccacgtc cggcgcctca
      961 cggcctcgac cggcgccgcg aactcaccgc taccgctaca ccggccacga tcaaaccgat
     1021 caaggcacca gttccggccg cgatcaacgg ctgcgggaag accgcatcgg gcagcgagta
     1081 gggcggcgtc aacaactggg cgtccggtcc ggtctggcca gtgaggttca gctcatcgat
     1141 ccgggcctga accgccttct cgcggtcctg ggatgcgacc agctgcgccc gagcctcgtt
     1201 gagggcgacc tgggtggcgg ttccggccgt caccgcagga gtgagttgct gtatgcgcgt
     1261 ttcggccgcg gcggtgttcg ccttcgcatc tgcgagctgg gtgtcgaggt tgcgggacac
     1321 accggtgggc tggccgatca gcgtcaggta accgtccatc accgactgca gcgtctgcag
     1381 cgcggccagc ttggtagcgc cgtgggcctc gacctggatg acgttgctgt tgtccacgac
     1441 ctgcacgctg acgtccttgt cgaggtcctt gaactgccgg ccctgcttct gggcgaccgg
     1501 tccgaggact gcccggctct tcagatacac cagctgggtg gagagttgcc gatcctgctt
     1561 gagcgggtcg ccgccctggt cccggccgat ggagtagagg atctccgcgc gtgccccgta
     1621 ggttttgggc aaaacgagcg caccggccag gccggcagca gtgccgagca ggatgatcgt
     1681 caacgccagc agtgccaggc gggtcgtcaa agggccgaca ccgcggtctt cggtggggct
     1741 gtcggctcga tcccccgaac gctgcggtgg tacttcaccg gcccccggag acacctgaag
     1801 tgtctcgtcg taggcggccg aacgtccatt cgactcgctg gccccgtact gaaagacatt
     1861 ggatgggttc gtcacagcgc acctccgagc acatcgcaga cccgcgcgac ctgctcaacg
     1921 ctcagggtcg gggacatggg aagggatagg atccggctgg ccgcgtgttg cgccaccggc
     1981 attttttcgg cattcgggac cgactcgtgg acagcggcca gggccggttg ctcgtggcac
     2041 ggtatcgggt agtgcacacc ccacccgata ccggccgcag taagcgcgtc accaaccttg
     2101 cgtcggtcgt cgacctggac gaccgccagg tggtacaccg gttcggcgcc aggctgtacc
     2161 aacaccggtg tacaacccgg tggcagcatc tcgcggtatg cggccatcgc cgatgcgcga
     2221 agcgaattgt cggcgtccag ccggggcaac ttggcggaca gcagcgccgc ttgcagcgta
     2281 tccagcctgc tgttgcgtcc ggccagatca tgcaggtagc gatcggtgga tgaccgcccg
     2341 tggttggcca tgctgcggat ggcttcggcc agcgcgagat cactggtgat caccgcaccc
     2401 ccgtcgccga gggcgccgag gttcttgccg gggtagaagc tgaacccggc cgcgatgccg
     2461 acgctgcccg ccttgtggtc ctggtggcgg gcgccgtggg cttgggcggc gtcctcgatg
     2521 agagcgagcc catgcgcggc ggcgatcgcc gagatcggtc cggggtcgac catctggcca
     2581 taaaggtgca cggcgatgat cgccgccgtc gagccgttga tcgcggccgc ggccgcgtcc
     2641 ggatcgatca gcagggtgtc ggcgcagacg tcgacgaacc tgggccgcgc gccgacggcg
     2701 cagaccgcct cggcggtggc gatgaaggtg ttcgtgggaa tgatgacctc gtcgccaggc
     2761 ccgatcccca caccgcggag aatgagttcc agggcgtcgg ttccgttggc caccccgatg
     2821 caggccttgg ctccgcagta ggtcgcgaac tcgcgctcaa agcgctcgac ctcggggccg
     2881 ccgacgaagt gaccgtggtc cagcacggtc ttccacgcga ggtcgaactc ctcacgcaag
     2941 tcgttgttca cgctctgcag gtcgagaaac ggaaccctgc cggtcatgag gccacccccc
     3001 gcacgcgttc cggtccggcc gaatcgatgc tgccggagac gaaggcgggg cgcccggtgg
     3061 cttccgcaac gtcagtggcc gcgaggactc gcacgatgtc cagtccacgc tcgccggatg
     3121 tgttgggctt ggcaccggtg cgaatgcatt caatgaaatg actgtcctgg accaggagcg
     3181 gctcattgaa ctggataaat ggcgaaacga tgtctccggt acggtaggaa acgggcatcg
     3241 cgtgcgattc accatggtcg tcgggatcac ccgggtctac accgatatca taaactcgga
     3301 cacgctcatt gtccgacata tcgtcataga cagccatttt gcggtccccg acgacggtaa
     3361 cccgccgaac cttgcatgga tccaaccaac tcacgtgcac gaatgcgtgg gtagctgcct
     3421 tttcgaagtc cagtcggagg taagccacgt cggcgtggcg gtttcccacg tgccgtttgg
     3481 cccataccca ggtggttctg gggacctcgt cgagcagaaa cgacgcgatc gagatgtcgt
     3541 gcggagcgag atcccagatg acgttgcagt cgcgctggta cttgcccagg ctcaaccggg
     3601 cggcgtcgat atagaggacc ctgccgagct cgccggaatc gatgatctcc ttgagcttcc
     3661 ataccgcggc gttgtactcg aaggtatgtc ccgccatgag gtgcacgccg ttcgccgcgg
     3721 ccgcgtcaac catctgctgc gcgtcctcga ccgtggtggc cagcggcttt tccaccagag
     3781 cgtgtcgccc gcttctcagc gctcgcaacg caacatcggc gtgcgcggtc ggcggggtcg
     3841 cgacgaccac tgcgtcaacc cgccccaaga cctcgtcgag atcgtgtgcc gcttccgccg
     3901 acgggtaggc cctcctggcc tctgcgatcc gctcgggatc ctggtcgacg atggtcacct
     3961 gcacacccgg catgctgctg agcacccgca tatgcttaga gccccagtag ccatagccca
     4021 ccaccgcgac gcgaacatct ggatcaaagg tcataagacc tccggattcg cgagcgaggt
     4081 ttgctgcggg ttgggtggta cctgcaacga acttcatcga gacgggcccc ctgccgtgac
     4141 tcgagatgtc tgccgataac ggaatgttgc gaaacacaca cggagagtga gcaggcggac
     4201 gaccttcatc ggtctgccgc gagccgtact caccctctcg tacagtgggt tcgcccctcc
     4261 ccacagtgcg tatatctact gcccactgcc agtcgttact cggttactgt aacacctacg
     4321 tctttcaccc gaacggcgta atcaatgcac tcagcgtgtt ggatacgtaa agttaccgag
     4381 cgaatacgca gcgaagtaac cggtgctgaa ggttcctccg ccgatccagt tctatcgcag
     4441 agatcgcgtt cgcgacaggc atgtcaggag atccacagtg acggctcagg gtcggatcgc
     4501 catctttgcc agccgctgcg gcgtcggcca gcggacgttc catacccaac ccagcttctc
     4561 gaacagccag atcacccggg ctgagatgtc aatctgtccc cggagcacgc cgtgccgggc
     4621 cgacgtcgga tcggcgtgat gcaggttgtg ccaggactcc cccgcggaca ggatcgccat
     4681 cggccagaag ttcgcggcct tgtcgcg
//
LOCUS       DASVXZ010000278         6340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_209647, whole genome shotgun sequence.
ACCESSION   DASVXZ010000278 DASVXZ010000000
VERSION     DASVXZ010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6340
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209647"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..1232
                     /locus_tag="VF788_05625"
     CDS             237..1232
                     /locus_tag="VF788_05625"
                     /inference="COORDINATES: protein motif:HMM:NF012606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase C"
                     /protein_id="HEX8933661.1"
                     /translation="MDEFVSHSSWMRDIPDNARVLSLSIPGSHNSCSVGGILGFSKTQ
                     NLDLSDQLNAGIRFFDIRLSHYQDNIFVHHDVVHMGKCYADVLSICSTFLTLYPSETI
                     LLSVKDEGRHDSMLGRFAPSRVFGKSRGDPMNWVIRSNSFEDAFKARTWEHVEDPSLF
                     YNLASPLPGDSLVNANLTFKTTLGEVRGKIILLRRFEAGQGVGFDLSYWPENMRFRSL
                     TNPAYAVEDHWRGPGEDDKYHFVITHIDEARRRDPRDLYITFSSAVNLNAHSYSKTIN
                     PRLSNYLEKSPRGRVGIIAMDYFEEPRGLVSNVIRMNFATEAIAGHGSHGGRPGR"
     gene            1372..1545
                     /locus_tag="VF788_05630"
     CDS             1372..1545
                     /locus_tag="VF788_05630"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX8933662.1"
                     /translation="MTSSIIANIGDGDWITYESELNRFVPRFPQVLLCLYDLNDFSGQ
                     LFVDIMRTHPTIL"
     gene            1815..2018
                     /locus_tag="VF788_05635"
     CDS             1815..2018
                     /locus_tag="VF788_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014144190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEX8933663.1"
                     /translation="MATGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINAAGFRSLEE
                     NQQVNFDVTQGPKGPQAENVTPV"
     gene            2144..3658
                     /locus_tag="VF788_05640"
     CDS             2144..3658
                     /locus_tag="VF788_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933664.1"
                     /translation="MLTRTATGAAERVDQTQVVPRAEWDVTSWWAAGGGAVAGALLFL
                     VAHHGILDDGYITLSYARTLAFHGSWGLTEFRTANTATSPLNVWLLALGTLVTRRPVV
                     ALGLVLVASTAVTAGWLSTIAARVGVGRWLLPALGLGLLVVNPLFASTVGMEIWLGVA
                     VLVGVGRYALDGRSVATGVLCGLAVLTRPDLVVPAGMLVVGLLALGAPRRLRVTGMVA
                     GVAALVALPWHVFSWFVLGGFVPDTFAIKTAAGQFGPGESFATGPYFIAHTWTRAFLL
                     IAVPVVVGLAAMLAWAVAWCRGVSTLVGRATLVFGAAGAAHYGAYALVGVPPHHWYYT
                     PSVGLLTICAAITVAAIAHRAFSLILVSAGLLVGLSAGTQLAVALPWDKPILYGNWAT
                     SQQYAAVGQGVGRLVPRGETVGGFGEIGTVAFFCDCDIIDPFTDRSKALEVEREREAK
                     AGPVMRALLAVNYAHLDQPPPTRIDHQLEYAQGEGPGWRTVGPTRGVGHIWLSR"
     gene            3814..5031
                     /locus_tag="VF788_05645"
     CDS             3814..5031
                     /locus_tag="VF788_05645"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing SpoIIE family protein
                     phosphatase"
                     /protein_id="HEX8933665.1"
                     /translation="MAAAEYDQLCRIESATDAAVGHLEVEDLLDELLDRVRELLQVDT
                     ATVLLVDPSSQQLVVTAARGIEAALRQGIRVPMGKGFAGRVAAEKQPVIIEQVDHTNV
                     LYSVLMEYGICSLLGVPLLSSGAVIGVLHVGTLVPRRFTDDDVELLQIVADRVAFATE
                     SRRAEVERASAAVFQRSLLPVQLPLVQGLELAARYVPAENGGVSGDWYDVFTLPSGWL
                     GIVIGDVVGRGLVAADMMSRLRSALRAYALLGDDPAEVLGRLDRQVQHFEPETMATVL
                     LAMFEPSFERLHLSSAGHPPPVLALPHQPAALLDVPSDHPVGVPGGLPRRATMINLSP
                     GALLCFYTNGLVERRGTSLDSNLQRLCESVMADPVDSVCAKVMAQLVSSDPPADDVVV
                     LAVRRQDSGEGGG"
     gene            5530..6171
                     /gene="bluB"
                     /locus_tag="VF788_05650"
     CDS             5530..6171
                     /gene="bluB"
                     /locus_tag="VF788_05650"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020635488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HEX8933666.1"
                     /translation="MDGDGFYEVVHRRRDVRGEFTGASVPPEVLRRILEAAHAAPSVG
                     LSQPWDFVLVRDVRTRRAFREHVLRERAIFADQLDAQQAATFSRIRVEGVLESSLGIV
                     VTYDPQRGSPAVLGRHAIAETGLYSVCLAIENLWLAATAEGLGVGWVSFYREEFLRQL
                     LHIPPRIRPVAWLCLGPIRHLQTTPDLERRGWRHRTPLEKVLHQERFREPLIP"
BASE COUNT         1055 a         1931 c         2062 g         1292 t
ORIGIN      
        1 cgcccctgcc gccccgaccc tgaacatgct cctcttgggg gacgaccggg aggcgatgag
       61 cgggaggcgt aaaccaaagt ggtgccgtcg tcgaatagct gatcggctcg atcttccgac
      121 gagcgagaac cgaatacgac agggccgact cgacccggct gtcaacggac cagtcagcgc
      181 cggcgccgct cacgggcaag gtgacggcgt ccggagccga accaccggag ggagcgatgg
      241 acgagtttgt ttcgcacagt tcgtggatgc gtgacatacc tgacaatgct cgagtattat
      301 cactgagcat tcctgggtca cataattcct gcagcgtcgg tggaatcctc ggattcagca
      361 agactcaaaa tctggatctg tccgaccagc tcaatgcagg gatacgtttt ttcgatatca
      421 ggctttcgca ctaccaggat aacattttcg tccatcacga tgttgtgcac atggggaagt
      481 gctacgcaga tgttctgtct atctgctcca ccttcctcac actttaccca tccgaaacaa
      541 ttttgctgtc agtcaaagac gaaggtcggc acgacagcat gcttggccga tttgctcctt
      601 ccagggtctt cgggaagtcc agaggcgacc cgatgaactg ggtgatccga tcgaactcgt
      661 tcgaagatgc ctttaaagcg cggacatggg aacatgtaga ggatccgtcg ctattctaca
      721 atcttgcttc cccccttcct ggtgacagct tggtgaacgc caatctcaca ttcaagacga
      781 cattgggaga agttcgcggt aagattattc tgctgcgaag attcgaagca ggtcagggcg
      841 tcggattcga tctctcctac tggcccgaaa atatgcgatt cagaagcctg acaaatccgg
      901 cctacgctgt cgaggatcac tggcggggtc ccggggagga cgacaaatac cacttcgtca
      961 tcacccacat agacgaagct aggcgtcgtg accctagaga tctttatatt acgttttcca
     1021 gcgccgtgaa cctgaatgcc cacagctact cgaaaacgat aaatccacgc ctcagcaact
     1081 accttgaaaa atcccctcga ggacgcgtcg gaatcattgc gatggactat ttcgaagagc
     1141 ctcgaggact ggtctcaaac gtgataagga tgaactttgc aactgaagct atcgccggtc
     1201 acggcagcca tggtgggcgt cccggccggt gactctgtgg ctggggatct ggttacgtgc
     1261 ggtacgcgtg ccgcgcccac atgtctatcg gcgcagcggg cctgctggga taatggcggt
     1321 gcggcctcgc catcaagagg cgatcatggc atcgaaggtt gcgccggtga gatgaccagc
     1381 agcatcatcg caaacatcgg tgacggtgat tggataactt acgagtcgga gctaaaccgg
     1441 ttcgtgccgc ggtttccgca ggtcctgctg tgtttgtacg acctcaacga cttcagcggt
     1501 cagctgttcg ttgacatcat gcggacacat ccgacgatct tgtgaaggtc gacggtcctg
     1561 gagaaccagt actacgtcgg cccctgatga gttcctcgcc acccgacggt gaccgatccc
     1621 agcggcggtg cgctggtgcc gcatggacga cgcccccgct tcctcgacca gcctgactgt
     1681 cccggcgatt gtcccggttg gagggctggc tggcagatga ggttgatagg atctgccagt
     1741 aattgcaagc ctggtccaag atgccgagag cccctggcgg gccccttggc tgaacaacgc
     1801 agggggtcgg tcgcatggct acgggtaccg tcaagtggtt caatgcggag aagggtttcg
     1861 gatttatcgc ccaggacggt ggtggtccgg acgtgttcgt gcactactcg gcgatcaacg
     1921 cagctggttt cagaagtttg gaagagaacc aacaggtcaa cttcgacgtc acccagggac
     1981 ccaaggggcc acaagcggag aacgttacgc ctgtctgatc agcacgcacc aactcctgag
     2041 gccagctcgg cgtccgcgac gcgccaaccg gctgacgact gccgtcgagc agtgtggcta
     2101 gggcgccccc ctcgcacgag gttgccctag ccatactctg cggatgctga ccaggacggc
     2161 aaccggcgcc gcggagcggg tagaccagac gcaggtagtc ccgcgggcag aatgggacgt
     2221 gacgtcgtgg tgggcggctg gcgggggtgc ggtcgctggc gcgttgttgt tcctcgttgc
     2281 ccaccacggg atcctcgatg atggctatat cacgctgtcg tacgcgcgga cgctggcctt
     2341 tcacggatcg tgggggctga ccgagttccg tacagcgaac accgccacgt cgccgctgaa
     2401 cgtatggctg ctcgctctgg gcacgctggt gacccgccgc ccggtcgtcg cgcttgggct
     2461 ggtgctggtc gcgtcgacgg cggtgacggc tggctggctg tcgaccattg ccgcgcgcgt
     2521 cggcgtcggt cggtggctgt tgcccgctct ggggctcggg ttgctggtgg tcaacccttt
     2581 gttcgcgtcg accgtgggga tggagatctg gctgggcgtg gcggtgctcg tcggtgttgg
     2641 gcggtatgcg ctggatgggc gctcggtggc cacgggcgtg ctgtgcgggt tggcagtgtt
     2701 gacccggccg gaccttgtgg tgcctgccgg gatgctcgtt gtcgggctgc tcgcgctggg
     2761 ggcaccgcgg cggctgcgtg tgacgggcat ggtcgctggt gttgccgcgt tggtggcgct
     2821 gccgtggcat gtgttttcgt ggtttgtgct cggtgggttt gttcccgaca ctttcgcgat
     2881 caagaccgct gctggtcagt tcgggcctgg tgaatcgttc gcgactgggc cgtatttcat
     2941 agcgcacacc tggacgcggg cgttcttgct tattgcggtt ccggtggtcg ttgggctcgc
     3001 cgccatgctc gcgtgggcgg tggcgtggtg ccgcggcgtc tccacgctag tggggcgggc
     3061 gacgcttgta ttcggggcgg ccggggccgc gcattacggt gcctacgcgc tcgtcggcgt
     3121 cccgcctcac cactggtact acacaccatc ggtagggctg ctgaccatct gcgctgccat
     3181 caccgtggct gccatcgcgc accgcgcgtt ctcgttaatc ctggtcagtg ctggtctgct
     3241 cgttggtctg agtgccggaa cccagcttgc cgttgcgcta ccgtgggaca aacccatcct
     3301 ctatggcaac tgggcgacct cccagcagta cgccgcagta ggccaaggtg ttggtcggtt
     3361 ggtgccccgc ggggagacgg tcggcggatt cggtgaaatt ggcacggtcg cgttcttttg
     3421 tgactgtgac atcatcgatc cgttcaccga ccggtcgaag gccctggagg tcgaacgaga
     3481 gcgagaagcc aaggcggggc cggtaatgcg ggcgttgctc gcggtgaact atgcgcacct
     3541 cgatcagccg ccgccgacgc ggattgatca tcagctcgag tatgcgcagg gcgaaggtcc
     3601 ggggtggcgc acggtcgggc cgacgcgggg tgtcggccac atctggctga gccgctagcc
     3661 tccgtccgat gcgcggccga tgatggccgg cgccaccgct gacccggccg cgtgaggctc
     3721 atcgcgggca gcggcgctgg cgctagggcc gcccgtcgcg cgccaaacgt gagttaggct
     3781 tggatcgtgt caacgccggg cgagcgggac cgaatggccg ccgccgagta tgatcaattg
     3841 tgtcggattg agtccgcaac cgacgcggca gttggccacc tcgaagtcga ggacctgctg
     3901 gacgagctgc tcgaccgggt gcgagaactc ctccaggtcg acacagccac cgtgcttttg
     3961 gtcgacccct cttcccagca gcttgtcgtt accgctgcca gagggattga agcggcgctt
     4021 cgtcagggga ttcgcgtccc gatggggaag ggttttgccg gtcgcgtcgc ggcggagaag
     4081 cagccggtga tcattgagca ggttgatcac accaacgtgc tctattcggt ccttatggag
     4141 tatgggatct gctctctgct cggggtgcca ctgctaagca gcggggcggt catcggtgtc
     4201 cttcacgtcg gtacactcgt tccccgccgg ttcactgacg atgacgtcga actgctccag
     4261 attgtggccg accgggtcgc tttcgctacc gaatcccggc gcgccgaagt cgaacgggct
     4321 agtgcggcgg tgtttcagcg cagcctactt ccagtccagc tgccgctggt gcaaggcctt
     4381 gaattagccg cccgctacgt tccggctgag aatggcgggg tcagcgggga ctggtatgac
     4441 gtattcaccc ttccgtccgg ctggttgggc atcgtaatcg gagatgtggt cgggcgtggc
     4501 ctggttgccg cggacatgat gagtcggctg cgcagcgcgc tgcgcgccta tgcactgctg
     4561 ggtgatgatc cggctgaggt gcttggcaga ctcgaccggc aggtgcagca tttcgagccc
     4621 gagacgatgg ccacggtgct cttggcgatg ttcgaaccgt cgtttgagcg cctgcaccta
     4681 tcctcggcag gccatccgcc accggtgctt gcccttcccc atcaacctgc ggccctgctc
     4741 gacgtgccca gcgatcatcc ggtgggcgtg cccggtgggc tgccccgtcg ggccacgatg
     4801 atcaacctgt cgccgggcgc gctgctctgc ttctatacca acggtttggt ggagcgccga
     4861 ggcacctcgc ttgactccaa cctgcagcgg ctgtgtgagt cggttatggc tgacccggtg
     4921 gactccgtct gtgcgaaggt gatggctcag ctggtgagta gcgacccccc tgctgatgat
     4981 gttgttgtac ttgcggtacg ccgccaagac agcggcgagg gtggcggtta gacctaattc
     5041 ttctcggcgc tgccctgatc actgagagac atccgcatgg agtacatgga aacggtcccc
     5101 gggggtgtct accggggacc gttacctggt agcggacgta ggatttgaac ctacgacctc
     5161 tgggttatga ggcgaatggc acccgtccca tgtatcccac cggggcctgc ggcgtcccgc
     5221 ctggccagga ccgatcatcc atgatatctc accacgtcca gcctgcccta ccgctgctca
     5281 tcgcgtcctt actaccgttt ctactaccac catccgatga tcgtcgtgca cgacggcggt
     5341 cgccttcctc ccgtcggggg cgcctgcggc tgctctcggg tccgggcgtt ttcagcgggg
     5401 catcggagag cccgtgtgca ccgagggtct catggccggt gtggcccgca acgggatgat
     5461 cacccgctga cgcggcgacg cctggtcggg tgggtgatgt tgtcatggtg cggtgggcag
     5521 actgcccaga tggatgggga tggcttttac gaggtcgtgc accgccgccg cgatgtccgg
     5581 ggtgagttca ccggcgcctc cgtgcctccc gaggtgctgc gccggattct tgaggccgcg
     5641 cacgcagcac ccagtgtcgg gctcagccag ccctgggact tcgtcctcgt ccgcgacgtg
     5701 cggacccggc gcgcgttccg tgagcacgtg ctgcgagaac gcgcgatctt cgcagaccag
     5761 ctggacgctc agcaggccgc gaccttctcc cggatcaggg tcgagggagt actggagtcg
     5821 agcttgggca ttgtggtcac ctacgacccc cagcgagggt cccccgccgt gctcgggcgc
     5881 cacgccatcg ctgaaaccgg cctgtactcg gtgtgcctgg cgatcgagaa cctgtggctc
     5941 gccgcgaccg ccgagggcct cggagtgggc tgggtcagct tctaccggga ggagttcctg
     6001 cgacagttgt tgcacatccc acctcgcata cgcccggtgg cctggctctg cttaggcccc
     6061 atccgccacc tccagaccac ccccgacctc gaacgccgcg gctggcgcca ccgcacaccc
     6121 ctggagaaag tcctgcacca agaacgattc agagaaccgc tgatcccttg accccaggca
     6181 tcttgcagca ttgatctgcc aacatcacca atggttccaa cctgcacagg cagtccgcca
     6241 acgtccgtgg acatccacct gaatacacag acgttgtcat tcagctagtc actcacccag
     6301 cggccagcag tgcccccgcg ggcgatccgg cccgcatctc
//
LOCUS       DASVXZ010000279         1581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1000984, whole genome shotgun sequence.
ACCESSION   DASVXZ010000279 DASVXZ010000000
VERSION     DASVXZ010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1000984"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VF788_05655"
     CDS             complement(<1..866)
                     /locus_tag="VF788_05655"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8933667.1"
                     /translation="MSLPFLGRSRELAALRVLVEHAGHGVGQAAVLQGEAGIGKTRLL
                     AEIATHAAQKGFQVLAGTTDELSRDRPLGALIEAFELEAGSPDPERAEIGQLIIGEFP
                     VSQSPPFHSSVADLSFRVIDASVALLERLATERPVMVTFEDLHWADPATLRAVRAIGR
                     ALFQLPVVLLVTLRPFPERPELARLIEDLSSHGAVHLSLAALDDPAVTALATAVAGAP
                     PGAALSGQLSWAAGNPLFVIELLKALGDQEILTVQQGRAEVTELLLPSTLPMTILRRM
                     SFLPTTTLEVLKV"
     gene            complement(920..>1581)
                     /locus_tag="VF788_05660"
     CDS             complement(920..>1581)
                     /locus_tag="VF788_05660"
                     /inference="COORDINATES: protein motif:HMM:NF014132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HEX8933668.1"
                     /translation="VVPSLAGTAGDSLIRDIGDLGETTILGVRSDAERDPQVLAHRID
                     TRAQEYFSECVGADPNAPRSWLVQGATVRQSTLTYHLLNETVMHGDDIAQAAGRPWQI
                     ESTHAAMVLGRFLVPVLQALDSRAMLDAEQAAGLQATYDIRIRGGDRFHFIFNDGALT
                     VEEPSLRKVDCHISADPVAFLKVAWSRQSQWSAIAKGKLLAWGRKPWLGPRFKGLIWN
                     P"
BASE COUNT          280 a          520 c          526 g          255 t
ORIGIN      
        1 accttgagaa cctccaacgt cgtagtcggc aggaagctca tccgccgcag gatggtcatc
       61 ggcagggtgc tcgggagcag gagctcggtg acctcggctc gtccttgctg cactgtgagg
      121 atttcctggt cgcccaaggc cttgagcagt tcgatgacga acagggggtt gcctgcagcc
      181 cacgacagct gcccggatag cgccgccccg ggtggggcac cggccaccgc tgtggccagg
      241 gcggtcacgg cagggtcgtc cagagccgcc aggctcaggt gcaccgcgcc gtggctcgac
      301 agatcctcga tcaaccgcgc cagctcgggg cgttccggaa agggccgcag ggtgacgagc
      361 agaacgaccg gaagctggaa cagagcgcgc ccgatggcgc gaacagcccg cagcgtagcg
      421 ggatcggccc agtggaggtc ttcgaaggtc accatgaccg gccgttccgt ggccagccgc
      481 tcgagtaacg ccaccgacgc gtcgatgacg cgaaaactga gatcagcgac gctggaatgg
      541 aatggaggcg actgggatac cgggaactcg ccgatgatga gctgaccgat ctcggcccgt
      601 tccggatcgg gggagcccgc ttccagctcg aaggcctcga tcagtgcccc gagcgggcga
      661 tcccggctca gctcgtcggt ggtacccgct agtacctgga agcctttctg ggcggcgtgg
      721 gtcgcgatct cggcgagtag ccgggtcttt ccgatcccag cttcaccctg caggacggcg
      781 gcctggccaa ctccgtgacc ggcatgctca acgagcactc gcaatgccgc caactcccgg
      841 gaccggccaa ggaacgggag tgacacaccg ggaacgttac gcctgccggc gcccggcctt
      901 taccggttcg gatcagccgc tacgggttcc aaatcaagcc cttgaaccgc ggtcctaacc
      961 acggtttgcg gccccaggcg agcagcttgc ccttggcgat cgccgaccat tgactctgcc
     1021 ggctccacgc caccttgagg aacgccaccg gatcggctga gatgtgacag tcgacctttc
     1081 gtaaggacgg ctcttcgacg gtgagcgcgc cgtcgttgaa gatgaaatgg aaacgatcac
     1141 cgccccggat gcggatgtcg taagtggcct gcagtcctgc cgcctgctca gcgtccagca
     1201 tggcccgcga atcgagagct tgcagcactg gcaccaggaa ccgtcccagc accatggctg
     1261 cgtgcgttga ctcgatctgc cacgggcgcc cggcggcctg cgcgatatcg tctccgtgca
     1321 tgacggtctc gttcagcagg tggtaggtca aggtcgactg gcggacggtg gcgccttgca
     1381 ccaaccagga acgcggggca ttggggtctg cacccacgca ttcgctgaag tactcctgag
     1441 cccgggtatc gatgcggtgg gccagcacct gcggatcccg ctcggcgtcg gagcgcaccc
     1501 cgagaatggt ggtctcgcca aggtccccga tatccctgat cagcgagtcg ccggccgtgc
     1561 cggcgaggct gggcaccacc t
//
LOCUS       DASVXZ010000280         1657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_657886, whole genome shotgun sequence.
ACCESSION   DASVXZ010000280 DASVXZ010000000
VERSION     DASVXZ010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657886"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VF788_05665"
     CDS             <1..197
                     /locus_tag="VF788_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933669.1"
                     /translation="QDVRAFVLELVETLSAADALDNPAPVVQVIAAWQHTAEVHADPG
                     LAARIHLLEGDLGSVSEPIA"
     gene            194..556
                     /locus_tag="VF788_05670"
     CDS             194..556
                     /locus_tag="VF788_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933670.1"
                     /translation="MSPKRGGRVAFPAGAREWEVRFGNTTAAKGWENPCQQAPGNTRE
                     AWHQMRTNPAPAPPTPRHHQLKGTLAFAEHGSKQLACWHIEVTGGGRIWYLLDPDRRT
                     VWITEAGTARPKKPTRSV"
     gene            complement(788..1138)
                     /locus_tag="VF788_05675"
     CDS             complement(788..1138)
                     /locus_tag="VF788_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933671.1"
                     /translation="MAILALFTVGSFWWIQTRRGRLQTFPPLSSAGAFTEQDVIVSLD
                     LVLHNTGPAPIAVLDFRLRTGPATPTDATFPGKSLGVDYSSKHHGTDRDELAGDASGS
                     HPSPPSGKDPHASC"
BASE COUNT          301 a          538 c          525 g          293 t
ORIGIN      
        1 cccaggacgt ccgtgcgttc gtgctggagt tggtggaaac gctgagtgcg gccgacgccc
       61 tcgacaaccc tgcgcccgtc gtgcaggtca tcgccgcctg gcaacacacc gccgaggttc
      121 acgccgaccc aggtctcgcc gcgcgaatcc atctgctcga gggcgacctc ggatcggttt
      181 ctgaacccat cgcgtgagtc ccaaacgcgg cgggcgggtg gctttccctg ccggtgctcg
      241 tgagtgggag gtccgcttcg gcaacaccac cgcggccaaa ggctgggaaa acccttgtca
      301 gcaagctccc ggcaacaccc gcgaggcctg gcaccagatg cggaccaatc ctgctcctgc
      361 gccgccgacg ccccgtcacc accagctcaa aggcactctg gcgttcgccg aacacggcag
      421 caagcaactg gcctgctggc atatcgaagt caccggcggt ggtcgaatct ggtacctcct
      481 cgatccagac cgccgcacgg tctggatcac cgaagccggc accgcacgcc ccaagaaacc
      541 gactagaagc gtctgaccta cgagtccgca gcgccacgag cagtgcatgc ggcgggcccc
      601 ccgctgtgcg cagggggccc gccgattcga gctggtcagt gtctagtcat cccagcacca
      661 gcggcggtag cggtcgtagt gcccgcggcg gtgttcgtgg tgctcgtggc gtttctcgcg
      721 accgtgtttc ttgcggtcgt cgcctttgcc tttgccatga tcgccagctg agaatggtgt
      781 gaacacttca gcaactcgca tgcggatcct tcccacttgg tggggacgga tggctccccg
      841 acgcgtcccc tgccagctca tcacggtcgg taccgtgatg tttcgagctg tagtcaactc
      901 ccaggctttt tccaggaaaa gtcgcgtcag tgggtgttgc tggtcccgtc cgcagccgga
      961 agtccagcac agcaatcggt gccggaccgg tattgtgcag caccagatcc agcgacacga
     1021 tcacgtcctg ttcggtgaac gctcctgcag aggagagcgg cgggaaggtc tgtaatcggc
     1081 ctcgtcgtgt ctgaatccac caaaacgagc cgacggtgaa cagcgcgagg atggccataa
     1141 ccacggctgg cgtcaaccat ggtgtggggc aggagcaggc tggggagctc acagcgtatg
     1201 tgttcacgac accggactac caggttgcac tcgatcgccg gccaaacaaa tcgacggcca
     1261 ggtcaacgcg gcgcatcagt tgaggtcccc ggcgcggcgg caaccgcgag acagccaacc
     1321 acttgacccc agtcggtctt cgacggtccg gcacctaccg cgacctgccg tccagcgttc
     1381 ggacccgtcc gtcggtggat gcgcaaatcc aggggcgttg ctgtcaggct ccgctgtcat
     1441 cgagggcctt cggcttgtag tccccggcgg accgtggggt cgcggtatgc cgcaagacgt
     1501 ctgcgtgaat agcctgcaga cttgccgtgg tctgggtgag cttggacgct gagtcgatgg
     1561 atgaagtcga gggcaacgtc cagcgtcagc accacttgag gttgatgaac tgcaacaacg
     1621 aacggatcac gctcgatgaa gcgctagggc gcatgcg
//
LOCUS       DASVXZ010000281         2044 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_479012, whole genome shotgun sequence.
ACCESSION   DASVXZ010000281 DASVXZ010000000
VERSION     DASVXZ010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479012"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..98)
                     /locus_tag="VF788_05680"
     CDS             complement(<1..98)
                     /locus_tag="VF788_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEX8933672.1"
                     /translation="MAKKDGAIEVEGRVVEPLPNAMFRVELENGHRV"
     gene            complement(303..815)
                     /locus_tag="VF788_05685"
     CDS             complement(303..815)
                     /locus_tag="VF788_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1707 domain-containing protein"
                     /protein_id="HEX8933673.1"
                     /translation="MGRITGMMDMVDDQPPRNQMRAADSDRERVAERLRSAHAEGRLD
                     LTEYDERVQQAWAARTYGELEVLTADLPPAQSSAAPVARGEVQPSGRQQRHGRGRHGA
                     VAAWASASAINLVIWAIVSLTTLSWVYPWWVWVAGPWGAMLLAGRLSRRGDRGGRRGR
                     QGDQRYGAGL"
     gene            complement(897..1280)
                     /locus_tag="VF788_05690"
     CDS             complement(897..1280)
                     /locus_tag="VF788_05690"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX8933674.1"
                     /translation="MSRRLATSGSPFEKAFGFSRAVRVGERVVVAGTAPVWPDGSCPK
                     DAGDQARRCFEIIADALGEVGASLTDVVRCRMFVIDSSDADAVGAVHGQLFTEIRPAA
                     TMVVVAGLLDPRWKVEIEAEAIIAS"
     gene            complement(1310..2044)
                     /locus_tag="VF788_05695"
                     /pseudo
     CDS             complement(1310..2044)
                     /locus_tag="VF788_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015785672.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
BASE COUNT          345 a          750 c          612 g          337 t
ORIGIN      
        1 acccgatgac cgttttccaa ctcgacccga aacatcgcgt tgggcagtgg ttccaccacc
       61 cggccctcga cctcgatcgc cccgtccttc ttggccatgt cctccgcgtt cctgctcact
      121 tcaccctgcc gccggctggc ggctctgcct cgacgcgggc accccggatc cacgacgtgc
      181 ggaaggtcac gtgcgggaga cgcactgctg agcagggaga cctgcgcaga tacctgcaaa
      241 cacgctgaga accagcgcag tgctcgcgcc gacagcacag tttacgtcgc ggtgacgccc
      301 ggctacaaac cggccccgta ccgctggtca ccttgcctac cccggcgacc cccacggtca
      361 ccccgtcggg acagccggcc cgcaagcagc atcgcgcccc atggccccgc aacccacacc
      421 caccagggat acacccagct cagggtggtc agcgatacaa tggcccagat caccaagttg
      481 atcgcgctcg cgctggccca cgcggcaacg gctccgtgcc tgccacgtcc atggcgttgt
      541 tgccgcccag acggttgcac ctcgccgcgg gctaccggag cggccgagga ttgagccggc
      601 ggcaggtcgg cggtgagcac ctccagctcg ccataggtcc gggccgccca ggcctgctgg
      661 acgcgctcgt cgtactcggt gagatccagc cggccctcgg catgcgccga tcgcaaccgc
      721 tccgctaccc gttcccggtc gctgtccgcg gcacgcatct ggttgcgagg gggttggtcg
      781 tccaccatgt ccatcatgcc cgtaatacga cccatgggta cctccactga ctgcccacac
      841 ctaactataa caccgttata ataagggtac caagggtcgt tccagctcct gggccctcag
      901 ctggcgatga tggcttcagc ttcgatctcg accttccagc gcggatcgag cagcccggcg
      961 acgaccacca tggtggccgc cgggcgaatc tcagtaaaca gttgcccgtg cactgcgccg
     1021 accgcgtcgg cgtccgatga atcgatcacg aacattctgc aacgcacgac atctgtcagg
     1081 ctggcgccga cctcgcccaa tgcatcagcg atgatctcga agcaacggcg cgcctgatca
     1141 cccgcgtcct tcgggcagga gccgtccggc cacaccggcg cggtgcctgc caccacgact
     1201 cgctcaccaa cccggacagc ccgcgaaaac ccgaaagcct tctcaaacgg cgaccccgat
     1261 gttgccaacc gccgcgacac cagtcctccc ctgccgttca gcttggggct caggccttga
     1321 cgggctccgg ttcggcgatg gggttcgcgc cgtggatggg gccctcggca ttggccaacc
     1381 gggtagcacc gcctccggta gcaccaccgc cccaacgcag cgagatgatc tcagcggcga
     1441 tggatatcgc ggtctcctcg ggggtgcgcg cacccaggtc gaggccgatc ggcgaggcta
     1501 tcttcttgag ctccccgtcg gtcacgcccg cctcgcgcag ccgagattcc cggttcttgt
     1561 gagtcttgcg cgatcccatc gcgcccagat aggcgagatc cagcttcagt gcttcgatga
     1621 tgaccggaac atcgaacttc ggatcatggg tcagcacggt gacgacggtc cgcgagtcga
     1681 tccgcccggc ctcggcctcc tctttgaggt accggtgcgg ccagttcacg acgacctcgt
     1741 gcgcgtcggg gaagcggctc ttggtggcga acaccggtcg cgcatcgcac accgtcgtgt
     1801 ggtacccgag gagcactcct acccgggcca tcgcggcagc gaagtcgatc gcgccgaaca
     1861 ccagcatccg aggcggcggc tgcatggagt tcacgaacac atccatgcct tcgccgcggc
     1921 gctccccttc ggggccgtag tgcagggtga ccacccggcc ggcggcgagc gcgccgcgga
     1981 catcttccaa aatagcttcg tctgcgcggg atgagcctgt ggtcccggtg tgccggtcag
     2041 gcta
//
LOCUS       DASVXZ010000282         6302 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_30826, whole genome shotgun sequence.
ACCESSION   DASVXZ010000282 DASVXZ010000000
VERSION     DASVXZ010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6302
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30826"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VF788_05700"
     CDS             <1..346
                     /locus_tag="VF788_05700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HEX8933675.1"
                     /translation="ARYVDAFERYDITRLVTLLHDDAVMSMPPYDLWLRGPVEMGRWF
                     LGQGCGCQGSRLVPTAANGCAAFGSYRPDGTGGYQPFALQVIEISGDRIVGHHNFLDT
                     TLFAAFGLPAHL"
     gene            385..654
                     /locus_tag="VF788_05705"
     CDS             385..654
                     /locus_tag="VF788_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2277 domain-containing protein"
                     /protein_id="HEX8933676.1"
                     /translation="MCRNIRPLHNFDPPATQDEVYSAALQYVRKISGFTNPSRTNAEA
                     FHRAVDAVAEVSMRLLNELVTAAPPKDREVEAAKARERAAVRFTR"
     gene            complement(701..1663)
                     /locus_tag="VF788_05710"
     CDS             complement(701..1663)
                     /locus_tag="VF788_05710"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEX8933677.1"
                     /translation="MVVTSTVQAPIYSRGRRRASILRGYFALTKPRVIELLLVTTIPA
                     MLLAARGVPSLWLILATLLGGTMAAGSANVLNCVADADIDAQMKRTRARPLVTQEVPI
                     GHALIFGIALGMASFGWLWATTNLLSALLAVATILFYVFVYTLLLKRRTAQNIIWGGA
                     AGCMPVVIGWSAVTGTVGWPALVMFGVIFFWTPPHTWALAMKFREDYQRVGVPMLPAV
                     ASPLSVARRIVLFSWLMVAWSLLLVGATSWVYAVVAVLAGGWFVAMAHRLHLAVRRGH
                     TVNPMRLFHLSNTYLSLVFVAIAVDSVLGWPPLAVVSGWPAFGH"
     gene            1933..4038
                     /gene="tkt"
                     /locus_tag="VF788_05715"
     CDS             1933..4038
                     /gene="tkt"
                     /locus_tag="VF788_05715"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEX8933678.1"
                     /translation="MSVTDELTQLTTPRLPDDWTDVDTRAVNTIRVLAADAVQHVGNG
                     HPGTAMSLAPLAYTLFQRVLRHDPSDPAWTGRDRFVLSCGHSSLTLYLQLFLSGYGLE
                     LEDIEQLRTWGSKTPGHPEYGHTVGVEITTGPLGQGLASAVGMAMAARRERGLFDPDT
                     PQGKSPFDHYIYVIASDGDIQEGVTSEASSLAGTQELGNLVMIYDDNEISIEDDTKIA
                     LSENTAARYEAYGWHVQTVCGGEDVVGILDALNAAKAETGRPSLIVLRTVIAYPAPNK
                     MNTGPAHGSALGADEVAAVKERLNFDPERSFAVEPEVIEHTRQVVARGQAAHAQWQQA
                     FDSWRRDNPSRAALFDRLINRELPAGWAEKLPTWEPDAKGIATRKASGEVLSAIGEEL
                     PELWGGSADLGESNLTTIKGADSFGPEKISTKVWTAQPYGRTLHFGVREHAMGAILNG
                     IALHGPTRPYGGTFLIFSDYMRPAVRLAALMKTPVTYIWTHDSIGLGEDGPTHQPVEH
                     LAALRAIPGLDIVRPADANETAAAWKALLEKGTRPTGLALTRQSVPVLEGTDAIGVSR
                     GGYVLSDTATEVGNGLPDVLLIATGSEVQLAVAAQQILAAEGIGTRVVSMPCVEWFDE
                     QEPSYRDQMLPPAVKARVAVEAGIAMPWHRFVGDHGEVISLEHFGASADWQTLFREFG
                     FTGEAVAAAARRSLGRIKP"
     gene            4058..5185
                     /gene="tal"
                     /locus_tag="VF788_05720"
     CDS             4058..5185
                     /gene="tal"
                     /locus_tag="VF788_05720"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEX8933679.1"
                     /translation="MSSTDTLLALSEAGVSIWLDDLSRHRITSGNLTQLITEQHVVGV
                     TSNPTIFAHAVEHAEDYDEQIRALAARGASVEDAVREITVTDVQRACDVFSGTWETTG
                     GVDGRVSLEVDPRLAHDTDGTLAQASELWKMVDRPNLMIKIPATAEGLAAISGALADG
                     ISVNVTLVFSVERYREVMGAFFAGLEQASANGHDLAAIASVASFFVSRVDTEVDKRLE
                     AIGTERALALRGQAAVANARLAYAAYQQEFATPRWARLHQAGARPQRPLWASTGVKNP
                     AYPDTKYVTELIAPGVVNTMPENTLLALADHGTVPGDQVSGTAEQAQRTFDELVDVGI
                     DLDDTFVVLEREGAEKFEASWAELAETVRGQLAKAAPPAAG"
     gene            5193..>6302
                     /locus_tag="VF788_05725"
     CDS             5193..>6302
                     /locus_tag="VF788_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEX8933680.1"
                     /translation="MSQLNVDILATALAGAAESWVDKLAAERVASALADQDPTLWGPQ
                     AQPEAARRLAWVALPQTSRSLVPTVEALRAELHAEGIDRVVLAGMGGSSLAPEVICAT
                     DQVALTVLDTTDPGQVADALAGELARTVLVVSSKSGTTVETDSHRRVFAAAFAAAGLD
                     PAAHLVVVTDPGSPLQQIAEAEGYRAVITAEPDVGGRYSALTAFGLVPAGLAGANITQ
                     LLDEAAELVPSLALDDPANPALQLAAALAAGHAAGAEKVVLADTGSGMLGFADWAEQL
                     IAESTGKQGTGLLPVVVENPAAPGFADAGPDAVPVAIGPGVAAAALAVDGTVGGQLLL
                     WEHAVALVGRLLGINPFDQPDVEAAKVAARAQLENS"
BASE COUNT         1090 a         2104 c         2131 g          977 t
ORIGIN      
        1 cgcccggtac gtggatgcct tcgagcgcta tgacatcacc cggttggtca cgctcctgca
       61 cgacgacgcc gtgatgtcga tgccgcccta tgacctctgg ctgcgcggac ccgtcgagat
      121 gggtcggtgg ttcctcggcc agggctgcgg gtgccagggc tcacgcctgg tgccgacggc
      181 ggccaacggc tgcgccgcct tcggctcata ccgcccggac ggcacgggtg gctaccagcc
      241 gttcgccctg caggtcatcg agatctcagg tgaccggatc gtcgggcatc acaacttcct
      301 ggacaccacc ctgttcgcgg ccttcggcct gcccgcccat ctctagatct ccggcaggac
      361 agctatcgcc cttacgattt gggcatgtgc cggaacatcc gcccgctaca caacttcgac
      421 ccgcctgcga cgcaggacga ggtatacagc gcggcgctgc agtatgtacg gaagatcagc
      481 ggattcacca acccgtcgcg aaccaacgcg gaggccttcc accgagcggt ggatgcggtc
      541 gccgaggtct cgatgcggtt actgaacgag ctggtgaccg ctgcgccacc gaaagatcga
      601 gaagtcgaag ccgccaaggc gcgcgagcgc gccgccgtcc ggttcacccg ctgaccggcc
      661 cctgacgcat cagctgattt ccacccctag cgctctcgag ctaatgaccg aacgccggcc
      721 atccggatac gacggccaag gggggccacc cgaggacgga atcgacggcg atcgctacga
      781 acaccagcga taggtaagtg ttggacaggt ggaacaggcg catggggttg accgtatggc
      841 cgcgccgaac cgcgaggtgc agccggtgcg ccatcgcgac gaaccatccg ccggcgagca
      901 ccgctacaac ggcgtagacc cagctggtgg caccgaccag gagcaggctc caagccacca
      961 tgagccagct gaacagcacg atccttcgtg ccaccgaaag cggggatgcc actgcgggca
     1021 gcatcggtac accgacccgt tggtagtcct cgcggaactt catcgccagc gcccaggtat
     1081 gcggcggcgt ccagaagaag atcaccccga acatcaccag cgctggccaa cccaccgtgc
     1141 cggtgacggc cgaccagccg atcaccaccg gcatgcagcc ggcggcacca ccccagatga
     1201 tgttctgcgc ggtgcggcgc ttgagtagca gcgtgtagac gaagacgtag aacaggatgg
     1261 tcgccactgc caggagcgca gaaagcagat tggtggtggc ccacaaccag ccgaacgacg
     1321 ccatccccaa cgcaattccg aagatcagcg catggccaat gggcacctcc tgggtgacca
     1381 gcggccgggc tcgggttcgc ttcatctggg cgtcgatatc ggcgtcggcg acgcagttca
     1441 ggacgttcgc gctgcctgcg gccatcgtgc cgcccagcag ggtggccagg atcaaccaca
     1501 gcgagggtac tccccgcgcc gcgagcaaca tcgccgggat ggtggtgacc agaagcagct
     1561 cgattacccg cggcttggtc aatgcgaagt acccgcgcag gatactggcg cgacggcgcc
     1621 ctcgcgaata gatcggagcc tgaacggtac tggtcacaac gatcccgtgg gctgggacgc
     1681 tgcgctcacc gtggctcctc ccgaccgccg gatccggacg gcgcaggcat gaatggccct
     1741 ccggcgggta ctcccttgct ctagatggta gctgcgtggc aggcacgttc ccccccgggg
     1801 ccgctctggc gggggagatc acaactagcc ctctctcgct agggtgggta tggaccaggg
     1861 atcagccccc cgaggttggg cccaagcaca caagcctcgc ggcgccgacc gagcacagtc
     1921 aggagcacga tcgtgtccgt caccgacgag ctgacccagc tcaccacccc ccgccttccc
     1981 gatgactgga ccgacgtgga cacccgcgcg gtgaacacca tccgggtact ggccgccgac
     2041 gctgtgcaac acgtcggcaa cggccacccg ggaaccgcta tgagccttgc cccgctggca
     2101 tacacgttgt tccagcgggt cctccggcac gatcccagcg atcccgcctg gaccgggcga
     2161 gaccggttcg tgctctcttg cggccattcc agcctgacgt tgtacctgca gctgttcctg
     2221 tccggatacg ggctggaact ggaagacatc gagcaactgc gcacctgggg atccaagacg
     2281 ccggggcacc ccgagtacgg gcacacagtc ggcgtggaga tcaccaccgg gccgttgggc
     2341 cagggcttgg cctctgcggt gggaatggcc atggcggcgc gccgggaacg cggcctgttt
     2401 gatcccgaca caccgcaggg caagagcccc ttcgatcact acatctacgt catcgcctcc
     2461 gatggagaca ttcaggaagg cgtcacctcg gaggcctcct cgctggccgg cacgcaggag
     2521 ctcggcaacc ttgtgatgat ctacgacgac aacgagatct ccatcgagga cgacaccaag
     2581 atcgcactgt cggagaacac cgccgcccgg tacgaggcct acgggtggca tgtgcagacc
     2641 gtgtgcggtg gtgaggacgt ggtcgggatc ctggacgcgc tgaatgcggc caaggccgag
     2701 accggccggc cctccctcat cgtgctgcgc accgtgatcg cctaccctgc gcccaacaag
     2761 atgaacaccg ggcccgcgca tggatccgcg ctgggtgccg atgaggtagc ggccgtgaag
     2821 gagaggctga atttcgaccc ggaacgctcc ttcgccgtag agccggaagt catcgagcac
     2881 acccgccagg tggtggcccg cggccaggct gcgcacgccc agtggcagca ggccttcgat
     2941 tcctggcgcc gggacaaccc atccagggct gctctgttcg atcgtctgat caaccgcgag
     3001 ctacctgccg gctgggcgga gaagctgccc acctgggagc ccgacgcgaa gggcatagca
     3061 actcggaagg catccgggga ggtgctctca gccatcggcg aggaactccc ggagctatgg
     3121 ggtggctctg ccgacctcgg ggaaagcaac ctcaccacga tcaagggtgc cgactcgttc
     3181 ggccctgaga agatctccac caaggtgtgg accgcgcagc cctacgggcg gaccctgcac
     3241 tttggggtac gtgagcacgc catgggtgcg atcctcaacg gcatcgcgct gcacgggccg
     3301 actcgcccct acggcggcac attcctgatc ttcagtgact acatgcgtcc cgcggtgcgg
     3361 ctggctgcgc tgatgaagac accggtcacc tatatctgga ctcatgactc gatcgggctc
     3421 ggcgaggatg gccccacgca tcagccggtc gagcatttgg ccgcgttgcg ggccattccc
     3481 gggttggaca tagtgcggcc cgcggatgcc aatgagaccg cggcggcgtg gaaggcattg
     3541 ctggagaagg gcactcgccc gaccggccta gcactaaccc ggcagagcgt gccggtgctg
     3601 gaaggcaccg acgccatcgg tgtctctcgt ggcggttacg tgctctccga caccgcaaca
     3661 gaggtcggca acggcttgcc tgatgtgctg ttgatcgcca ccgggtccga ggtgcagctc
     3721 gccgtcgccg cacagcagat cttggcggcg gagggaatcg ggacccgggt ggtgtccatg
     3781 ccatgcgtgg aatggttcga cgagcaggag ccgtcctacc gcgatcagat gttgccaccg
     3841 gcggtgaagg ccagggtggc tgtcgaggcg gggatcgcga tgccctggca ccgcttcgtc
     3901 ggcgaccacg gcgaggtgat ctcgctggaa catttcggcg catccgccga ctggcaaacc
     3961 ctgttccggg aattcggctt taccggtgaa gcggtcgccg ccgcggcccg ccgcagtctc
     4021 ggacgcatca agccttaagc tttcgggagg tacccctgtg agcagcaccg ataccttact
     4081 agccctgtcc gaggccggtg tgtcgatctg gctggacgat ctgtctcgcc accggatcac
     4141 ctcaggcaat ctgactcagt tgatcactga gcagcatgtg gtgggggtga cgagtaatcc
     4201 gacgatcttc gcccatgcgg tggagcacgc cgaggactac gacgagcaga tccgggcgct
     4261 ggctgctcgc ggcgcctcag tcgaggatgc cgtacgggag atcaccgtca cggacgtcca
     4321 gcgggcctgc gatgtgttca gcgggacctg ggagaccacc ggcggtgtgg acggccgggt
     4381 gtcgctggag gtcgatcccc ggctggcaca cgacaccgat ggcaccctcg cgcaggccag
     4441 tgagctgtgg aagatggtcg atcggcccaa cctgatgatc aaaattccgg cgacggcaga
     4501 aggcctggcg gccatcagcg gcgcgctggc cgacgggatc agcgtgaacg tcacgctggt
     4561 cttctccgtt gagcgctacc gcgaggtgat gggcgccttt ttcgccggtc tcgaacaggc
     4621 cagcgccaac ggccacgacc tggccgcgat cgcgtcggtc gcgtcgttct tcgtctcccg
     4681 ggtcgacacc gaggtggaca agcggctgga ggcgatcggc accgagcgcg cactggcgct
     4741 gcgcgggcag gccgcggtgg cgaacgcccg gctggcgtac gcggcgtacc agcaggagtt
     4801 cgcgacgccg cggtgggccc ggctacacca ggccggagcg cggccgcaac ggccactgtg
     4861 ggcgtccacc ggggtgaaga atccggccta cccggatacc aagtacgtca ccgagttgat
     4921 cgcgccagga gtggtgaaca cgatgccgga gaacaccctg ctcgccctcg ccgatcatgg
     4981 cacggtgccc ggtgaccagg tgtcggggac tgccgagcag gcccagcgca ccttcgatga
     5041 gctggtcgat gtcggcatcg atctcgacga cacgttcgtc gtgctcgagc gcgagggggc
     5101 ggaaaagttc gaagcatcct gggccgagct ggctgagacg gtccgcggcc agctggccaa
     5161 ggccgcaccg ccggcggcgg gctgaggcgt cgatgtcgca gctcaacgtc gacattctcg
     5221 cgacggccct ggccggtgcg gccgagtcgt gggtggacaa acttgccgcg gagcgggtcg
     5281 catcagcgct ggccgatcag gatccgacac tgtggggacc gcaggctcag cccgaggccg
     5341 ctcgacggct cgcctgggtg gcgttgccgc aaacctcccg ttccctggtg cccaccgtcg
     5401 aggcgctgcg ggccgaactg cacgccgagg gaatcgatcg ggtggtgctg gccgggatgg
     5461 gcggttcctc gctggccccc gaggtgatct gcgccaccga ccaggtagcg ctgacagtgc
     5521 tggacaccac agaccccggt caggtggccg acgcgctggc tggcgaactc gcgcgcactg
     5581 tgctggtcgt gtcgtccaag tcgggcacca cggtggaaac cgacagccac cggcgggttt
     5641 tcgctgccgc gttcgccgcc gccgggctgg acccggcggc gcacctcgtg gtggtcaccg
     5701 acccgggatc gccgctccag cagatcgccg aagcggaggg ttaccgcgcg gtgatcaccg
     5761 ccgaaccgga tgtgggcggg cgctactccg cgctgactgc cttcggcctg gtgccagccg
     5821 gcttggccgg ggcgaacatc acccagctgc tcgacgaggc cgcggagctt gtcccgtcgc
     5881 tggccctcga cgacccggcg aacccggcat tgcagctggc cgccgctctg gctgctgggc
     5941 atgccgccgg tgcggagaag gtggtgctcg ccgacaccgg ctcggggatg ctcggtttcg
     6001 ccgactgggc cgagcagctc atcgccgaat ccactggtaa gcaaggcacc ggtctgctgc
     6061 cggtcgtggt ggagaatccg gccgcaccgg ggttcgccga cgccgggccg gacgcagtcc
     6121 cggtcgcaat cggcccaggc gtagcggcgg ccgcactagc ggtcgacggc accgtgggtg
     6181 ggcagttact gctctgggaa catgccgtgg cgctggtggg acggctgctc ggaatcaatc
     6241 cgttcgatca gcccgacgtc gaagccgcga aggtcgccgc gcgcgctcaa ctcgagaatt
     6301 cc
//
LOCUS       DASVXZ010000283         5589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1449836, whole genome shotgun sequence.
ACCESSION   DASVXZ010000283 DASVXZ010000000
VERSION     DASVXZ010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5589
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1449836"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VF788_05730"
     CDS             <1..504
                     /locus_tag="VF788_05730"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HEX8933681.1"
                     /translation="GEGPCLEAMRTSQTIEVTDATSETRWSSYMTTAVNQGLGASLST
                     PITAAGATIGVTNLYALKPHTFTAEERARATAYTEQAAAAIAIATRLAHHTQLTDDLR
                     AALVSRATIDQALGIIMGDLHCSADDAFAVLRKASQDTNTKLRDVATTVITHTTGQPP
                     RPTPPIN"
     gene            complement(774..1304)
                     /locus_tag="VF788_05735"
     CDS             complement(774..1304)
                     /locus_tag="VF788_05735"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933682.1"
                     /translation="MVTDHQRAQRDAEPSGLSSHSSSAVSHAGGAVAAPNAAVTTEDV
                     DWLVGRLRAMVTASPAVWAGRGMTLLQLIALHFISALAPVTPTDLARVLDTKPPATSA
                     MIDRLARAGLVSRRSDPQNRRRVELTITAAAEPIVGDTDAQTAQRLKAVLHAMSSQTR
                     RPLIDILIDTVRRSAK"
     gene            1512..1931
                     /locus_tag="VF788_05740"
     CDS             1512..1931
                     /locus_tag="VF788_05740"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933683.1"
                     /translation="MVTVDDACWLADHLRKMVTSRPAAWAGSEITLAQLMALHVISAR
                     APITLMSLSEALGIRSPATSALVDRLARAGLVCRMPDPQDHRRVLLAVTGKTRAMIGK
                     IDVETARRLQGVLSSMGSAAQRCLTEVLKDTARRLAD"
     gene            complement(2287..2451)
                     /locus_tag="VF788_05745"
     CDS             complement(2287..2451)
                     /locus_tag="VF788_05745"
                     /inference="COORDINATES: protein motif:HMM:TIGR03544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8933684.1"
                     /translation="MWLSPAEVRDVVFSRPPVGELGYHTDEVDELLGVVHAELTRLVE
                     EKFNAPECVR"
     gene            complement(2442..3665)
                     /locus_tag="VF788_05750"
     CDS             complement(2442..3665)
                     /locus_tag="VF788_05750"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8933685.1"
                     /translation="MGHHSLDESLGMSNSAGYRSLMRAIDGAAAISLQHTRTWPVIRV
                     LAVAGYLVGFAAQCLWWGWPTDTLLIFGWLSAGALCCNAGQSWCRALQWVRDWGPVLG
                     LLVGYDYSRGIAAHGLAPHVTAMIRADELLAGGRLPTLWLQRHLYDPLRVHWWDVLAS
                     VVYLSHFVAVPGVAGVLWLRRRETWSAFVRRWLCLAIAGVATYLAYPAAPPWWASLHG
                     YLGEHVERLSARGWSALSLDSTGPLFDQGAALANPVAAMPSLHAAFSMFLAVFFLPRV
                     SRRWRPLLFAYPLVMMFTVLYCGEHYLIDVLAGWGYVLATFALVGVVERWWRPKIGIT
                     DQGRHRRRTRRVPGHHRRVVLTGSRSLSPVLTRRSALPPRRDQTGRGVGGAAVGLGTP
                     VEKVVEERPEVILCG"
     gene            complement(4006..4416)
                     /locus_tag="VF788_05755"
     CDS             complement(4006..4416)
                     /locus_tag="VF788_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933686.1"
                     /translation="MHLGRTVRRGSALALGAASAVTLGVGSASASTLTPVPQVAAISS
                     SQPGYRMDWDYCDDWNHRGEGPCRGDRWNWDGRNWNHDRWDGRQWNRRGDFWSAYCDD
                     WNHRSDAHCRGDRWTWDGHRWNHDRWDGRQWSRR"
     gene            complement(4698..4970)
                     /locus_tag="VF788_05760"
     CDS             complement(4698..4970)
                     /locus_tag="VF788_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933687.1"
                     /translation="MTTRVDEPPLPGDEVLRLDAAANRTSVLASTGRSLRQTLAFEYG
                     ADGAASLLVAAAAYQRLARAADTMAAAGGLLVCVDDGRLHISYGRS"
BASE COUNT         1026 a         1906 c         1763 g          894 t
ORIGIN      
        1 ggcgagggac cctgcttaga agcgatgcgc accagccaga ccatcgaggt caccgacgcg
       61 accagcgaga cccgctggag ctcttacatg accaccgccg ttaaccaggg tctcggcgcc
      121 tctttgtcca caccgatcac cgcagctggc gccacgatcg gtgtcacgaa cctgtacgcc
      181 ctcaagccgc acaccttcac cgccgaggaa cgcgcccgag ccacggctta caccgaacaa
      241 gccgccgccg ccatcgcgat agccacccga ctcgcacacc acactcagct caccgacgat
      301 ctacgcgccg ccctggtttc ccgtgccacc atcgaccaag cactgggcat tatcatgggt
      361 gacctgcact gcagcgcaga cgacgccttc gccgtcctgc gaaaggcctc ccaagacacc
      421 aataccaaac tccgagacgt ggccaccacc gtcatcaccc acaccaccgg acaaccccca
      481 cgccccacac cgccgatcaa ctagccaacc ggtcaccgag gtgcataagg acggcgtccc
      541 gtggcagagc tagattacgt acgcgccggt ttcgtcgagg aatgcctggc tgcccgtgtt
      601 gtcggagcct ggtcagatag accgactcgg aagctcctga ccctagaatc aggtgctcgg
      661 cgaccggaca ctagccgatc cgagcccacg aacgaagagc ccctcgccta catcagttgc
      721 cgcaacgggc ttcactacga gtcagtgatg ggctcgatca acgtggtcga gaattacttc
      781 gccgagcgtc ttacggtgtc aatgaggatg tcgatgaggg ggcggcgggt ctgggagctc
      841 atggcgtgca gcactgcctt gaggcgttgg gcggtctgcg cgtcagtgtc gccgactatc
      901 ggttcggcgg cggcggtgat ggttagctcg acgcgtcgcc ggttctgcgg atcggaccta
      961 cgggagacta gtccggcccg ggccagtcga tcgatcatcg cggaggtagc cggtggctta
     1021 gtgtcaagaa cgcgggccag gtcggtgggg gtgaccggtg cgagcgcgct gatgaagtgc
     1081 agcgcgatga gttgcagcag cgtcatcccg cggcccgccc agaccgccgg gctagcagtg
     1141 accattgccc gtagccgccc cacgagccaa tcgacatctt cggtcgtcac cgccgcgttg
     1201 ggggccgcca ccgcaccacc agcgtgggag acggcactgc tgctgtggga ggacaggccg
     1261 ctgggttcag cgtcgcgctg tgcgcgttga tgatcagtca ccatgtgatc tcctgagccg
     1321 gcaccgactc tcgtcggcca ccactgtaag ggattgggac ccgatctttc cgcttgctga
     1381 cggcaagcgc tatctccacc agcacacgcg aagccgactg ctgccgtcgg gtgtacaggc
     1441 aaggttcagg aattcgttgg gatacctcgg tgtttgcata cgacggaact gagggaagag
     1501 gccagcggtc aatggtgacg gtcgatgatg cctgctggct tgccgatcat ctgcggaaga
     1561 tggtgacgtc ccggcccgct gcctgggcgg gtagcgagat caccctggcc cagttgatgg
     1621 cgttgcatgt catcagcgcc cgagccccga tcacgctgat gtcgctgtcg gaggccttgg
     1681 gcattcgctc gccggccacc tcagcgttgg ttgatcgact ggctcgggct ggattggtct
     1741 gccggatgcc ggacccacag gaccaccgac gcgtcctgct ggccgtcacg ggtaaaacgc
     1801 gagcaatgat cggtaaaatc gacgtggaga ccgcacggcg cctgcagggt gtgctcagca
     1861 gcatgggctc ggcagcccag cgctgcctca ccgaggtcct caaggacacc gcgcgccgcc
     1921 tcgccgactg actacgcggg tgttgcgcca agcggtgcgc acaggcggcg gccccactag
     1981 ctacaggccg aaccggtggg gccttggttc aagccgtgcc cgggcgcacc agctgaaccc
     2041 agggcgttca taccatatct acacgcggtg ttccgcttga tacggccgcg cagctcttga
     2101 gccttgaccc tggccttgtc cgcgaggctc acaacagtct cctcctcggg tatcccgccg
     2161 cgtcggctcc gaaaggggta gtaggtacac gcgtcgaggt ccttcagcca tcgggtgttc
     2221 cgccctcgac acccgcacct gacctattgg ttcgcaccta ttttccgggg aggacggcgt
     2281 gcggcattac cgcacgcact ctggtgcgtt gaatttctcc tcaaccaacc tggtcaactc
     2341 agcgtgaaca acaccaagga gttcgtccac ctcatccgtg tgatacccca gctcacccac
     2401 tggcggccgg ctgaaaacaa catcacgaac ctcagcagga ctcaaccaca caggatcacc
     2461 tcaggtctct cctccacgac tttctccact ggcgtcccga gcccgaccgc cgcgccaccc
     2521 acaccacggc ccgtctggtc tcggcgtgga ggtagagcgg agcggcgggt tagcacggga
     2581 gataacgatc gggatccggt gagaacaaca cgacggtggt ggccgggaac gcggcgagtt
     2641 cggcggcggt ggcgtccctg atcggtaata ccgatcttgg gccgccacca ccgctcgacg
     2701 acgcccacca gcgcgaaggt cgccagcacg taaccccagc ccgcgagcac gtcgatgaga
     2761 taatgctcgc cgcagtagag cacggtgaac atcatcacca gcgggtaggc gaacagcaga
     2821 ggtcgccacc gccgggacac cctcggtagg aagaacaccg cgaggaacat cgagaacgcg
     2881 gcgtgcagcg aaggcatcgc agcgaccggg ttggccagcg ccgcaccctg gtcgaacagg
     2941 gggccagtgc tatccaggct cagggcggac caacctcggg cggagagccg ctcgacgtgc
     3001 tcaccgaggt agccatgtag cgacgcccac cacggtggcg ccgcggggta ggcgaggtag
     3061 gtcgctacgc cggcgatggc caggcacagc caacgccgca caaacgccga ccacgtctcc
     3121 cgtcggcgca accacagcac gcccgccact cccggcaccg cgacgaaatg tgacaagtag
     3181 accaccgacg caaggacatc ccaccaatgc actcgcaggg ggtcatagag atgccgctgt
     3241 aaccacagcg tcggtaaccg gccgcccgca aggagctcgt cggccctgat catcgctgtg
     3301 acgtgcggcg ccagcccgtg cgcggcgatt ccccggctgt agtcatagcc caccagcagg
     3361 cccaggacag ggccccagtc gcgcacccat tgcagtgccc tacaccacga ctggccagcg
     3421 ttgcagcaca gcgctccggc gctgagccac ccgaagatga gcagcgtgtc ggtcggccac
     3481 ccccaccaca ggcactgtgc cgcgaagccc accaggtagc ccgccaccgc gagtacccgg
     3541 atcaccggcc acgtcctcgt gtgctgtagc gagatcgcgg cagctccgtc gatagcacgc
     3601 atcagagacc ggtagccagc ggagttggac atgccgagac tctcgtccag ggagtggtga
     3661 cccacctacc gcccgtccct ccctggcgcc gactgcttgc tcattcgcct gctggatccg
     3721 tcacacctct ggtgccgcga ccactatcgc cgaagcccca ccgtcctcaa cctggcccgt
     3781 aacgaggtcg aggagtccgt gctcgacgtc caacgaatca ccaaggcaca cgtgaccgat
     3841 actgtcgttt cgacaagatc gcgcgacggc cctctccgcg acgacgagca cgacctgagt
     3901 gacgccggag ctgatcaacc ggtcgggctg gcctggtcac agtggcccga ccggcttgcg
     3961 gcgcccctca agtgagaatt atccggcgct cgtggcgaaa tatgctcacc gacggctcca
     4021 ctggcggcca tcccaacggt cgtggttcca gcggtggcca tcccaggtcc accggtcccc
     4081 acgacagtgc gcgtcgctac ggtggttcca gtcgtcgcag tacgcggacc agaagtcccc
     4141 ccgacggttc cactggcggc catcccaacg gtcgtggttc cagttgcgac catcccaatt
     4201 ccaccggtcc ccacgacaag gcccctcgcc acggtggttc cagtcatcgc agtagtccca
     4261 gtccatgcgg taccccggtt ggctggagct gatggcagcc acctgcggga ccggggtgag
     4321 cgtgctggct gacgccgagc ccaccccgag cgtcacagcg ctggcggcac cgagcgccag
     4381 cgcgctcccc cgacgtactg tccggcctaa atgcatgatg aaccctcctc gatcaagcgg
     4441 gtatagacct tagaagggac gtttcggtac aaatgtggtt gcgtgaggtg gctgagagtt
     4501 cactgagagt aattgaaggt cctggggaac gtccgatcac tgccgccccg agtgaagacg
     4561 cacagtcgtt gacgcggtga acgcgctggc ccgcaggttg tacgtgaccg tcgccccagt
     4621 gccacggccg gcctcccgtt cggcgtgagc agcgccgacg agctacgcgc agcggtcagc
     4681 tacctgtgcc tggccgctca cgagcggccg taggagatgt gcagacgacc atcatcgacg
     4741 cagaccagga gtccgcctgc cgcggccatg gtgtcggccg cccgcgccag ccgttggtag
     4801 gcggccgctg cgacgagcag gctggcggca ccgtcggcgc cgtactcgaa ggcgagtgtc
     4861 tgacgcagcg agcgacccgt cgaggccagg accgacgtgc ggttggcggc cgcgtcgaga
     4921 cgcagcacct cgtcaccggg tagcggcggc tcgtcgacac gcgtagtcac caccgcagcg
     4981 cgggagcggc taccggtccc gaaggcagcg gtaccggttc cgtctgcgct cgcttgcgcc
     5041 gtgacgcccg ggccgccgcg cgcggcatga gatcatgctc ttcgtttggg cgcatcgtcg
     5101 tcccacgcaa cacgacaacc gcctctggcg ggtgagcggc agcgaagctg ccgagccagc
     5161 gccagggtaa cggccgcgta cgtctcgggg ctggcgggtc tcctcgggcg cggtccagcg
     5221 ccagccaaag catcgtgcca cagcgcggtc cccatccgcg agcacgttct caggggattc
     5281 agttgctgat caccgctgag accattgagc cgctaacatg gtgggcagcg gttatacagc
     5341 tagccgcttt ccacagcaat tgctggatgg ggagctctgc taccgcgtat gtgggtgcta
     5401 ccccgccgcg tttgtcgggg cgtgagtgca tcagtggctc ccggtcgtcg gcattctggg
     5461 aggcctgagc gcatgatcga gtatcagcag gctggtggct ggtcgccgat gaggtcggaa
     5521 acggcgctga tcgagcccgg ttccctggtg gacaaatggt tgacggtggt ggcggcgcct
     5581 tccgaacag
//
LOCUS       DASVXZ010000284         4061 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_299895, whole genome shotgun sequence.
ACCESSION   DASVXZ010000284 DASVXZ010000000
VERSION     DASVXZ010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299895"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..256)
                     /locus_tag="VF788_05765"
                     /pseudo
     CDS             complement(138..256)
                     /locus_tag="VF788_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949312.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
     gene            complement(2671..3690)
                     /locus_tag="VF788_05770"
     CDS             complement(2671..3690)
                     /locus_tag="VF788_05770"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8933688.1"
                     /translation="MIFSLVYLLARRLVELLVLRARTDVSKDVEILVLRHEVSVLRRQ
                     VSRPRPRPADRAVLAALSAALPRMRWSVFFVQPKTLLRWHRELVAHKWTYPATKPPGR
                     PPTAQVVRELVRRFATENPDWGYRRIHGELTGLGHRVAPSTVWQILHRAGFDPAPRRA
                     GLTWSEFLTAQATTIVACDFFTIDTVFLRRLYVLFFIELGSRTVHLAGITAHPTGSWV
                     TQQARNLLMDLGDRVERLRFLIRDRDTKFVAGFDTVFTSEQIEIIRTPIRAPRANAIA
                     ERWIGSVRRECTDRILILGRRHLTAVLMTYLRHYNTVLKLSTLSSASGGMETAGLIRL
                     TAKKV"
BASE COUNT          828 a         1223 c         1251 g          759 t
ORIGIN      
        1 gtcgcgaatt gctgcgtcgg tagcccttcc agccaatgca ggacctccgg ttccagctcg
       61 acggtacccc acgtcatacc gtcaacgcta tagatccacg cgattcgtac tgcgacgcca
      121 cgccgcggct gaacggctca gcttgactca gactccgtcg tcaagccaac accgacggga
      181 caagtaaccc ccgtgccgcc aatcccacaa tacccgttcg ggttttttca caatcactca
      241 aatactgttg gtggtagtac tgttgctgtc gcaataatac ttgcgggagg gtgacatgga
      301 cggccaggcg gtaccggtgg tgtcgtacgg ccggatcagc gcggacactg ccggagacga
      361 gcacgacgtg gctgagcagc acaaagacaa ccgggagacg gcagcgcgga tgggttggac
      421 ggtcgtgcac gagatcaccg acaacgaccg gtcagcgggg accgggtcgg acgggcttga
      481 acggcatgca actgcaaccc tgcgtgcaac ccttggagcc tggtcgggat cttggtggct
      541 ccggcagtgt gggatccgat tggcgagtat gtgggcgtat acaacaaacg ctatacaacc
      601 ggttaaggtc gaaacgtgac ctcttcggta actgtcggca acaaggttcg atggagtctg
      661 atgcgctgct cgaagggctg ctgcgtcggt cggccccggt tcgggttcca cggttgctgt
      721 actcactgct gtacgtggcc ggtaggcggt tgatcaatca gagatcgtat gcgtggtggt
      781 ccgctgacgc cacgcttgct gcagatccgt tgctctccgg ctcgggagtg tggaagctcg
      841 gagggcatgc tgtctcaggc aacctgccgt gctcggaggc agcttctaat tgatcgctcc
      901 tcaggtcgct cacgattgac agcaactcct gagctcgcag gagctctgcg tgagggcacc
      961 aacgagatgg tgaatcggta gtggtgcgga aaagttaggt gaaatgcacg ttggcatgaa
     1021 cgcccgttct cggccatggt ggagatcacc tcacggcaat ccgttgatga ggtgatgtgc
     1081 ccggcccact cgggcctcgg taaggaggat aggatgtttg ctgcattgag ttcggtggag
     1141 atcggccgtc agcacgcgga gctgctcgca gcacgtaccg tcctgtctct gtttagcacc
     1201 ggcctgatag atggcagctt gaataatgcg cacgcggcgg accaatcgaa tgttctcggt
     1261 gcgctaatta attcggtact gccagactca caagcaaata atggccccac ggggtaattg
     1321 ctaggagtcc gagctgctgg cgcgggagtg ctcacgctag agccaccgaa tccgcagacc
     1381 ccgtggcccc caaagattgg cagcgcggcc gggtgaggtt ccctgcgcag gtcaacgatg
     1441 gttacagggt tcggcatcat ctggctggtg gggcacggtt gctgtacttc tcagctgtac
     1501 atgtggagac gatcagttca gatcaggatt gatcatcttg tgccgctggt ggggcaagtc
     1561 acctctgaag ttgcaccccg ggacagacgt cctggatcgc cccgatccac ctcgaagcat
     1621 tccaacgctg gtgtcaagca ccgaccgcgc tcccgccacc accgaagcac gctcgggcta
     1681 cgccgcccac cgagctcgca ccggcgcctc tgatctaatc acctggccat caccacgcaa
     1741 cgcgccctgc tggtgcggca ccggccgcaa atacaaaaat gctgcagcga tcccagcgcc
     1801 ggccaaacca cccagaactg actgaccaac tacccttcac gcaaagtgcg ccagagctcg
     1861 ttccctgtcg ctccacacat ggcggctggc ggaaccgctg gtcagatgag cagtccaaac
     1921 atatatccca ctactaatac cccgacgacc aaggctattc ccggaacagt gatcactctt
     1981 tcctggaccg acagctcgac accggctcat tctatctcaa acttagtcac tgcaactgtt
     2041 gcaattccga caaccaagag gaggaaacca agaatcggca gggagccaaa aaggaagaaa
     2101 ctcgtgatga ttgcaaacag tcctgacgcc aacaaccgta ggtggcgatt ccggtggagc
     2161 acatccgccg gtctcagtat gtctgcaact gcaggggcca cgtaacgcct gtaccagttc
     2221 tgacagtcgg tcgaccgctg gtgccagtcg ttatcttcca gctcgttgac gacagaacta
     2281 accgtggtat aagtactctt cgatcccgct gcggaagcct ggagcgtggt tctggttgcc
     2341 gagcttacgc gctggctctc gcgctcaacg ctgcccgtct caacccgccg agtagcaagg
     2401 ccttctttcg atacggcgcg cgcagtccca caatccgcgc agaaccgggc accctcccac
     2461 attttacttc cacagttcgt gcagtacatg atctgctcct cgcgtaccgc agtgtcgcac
     2521 gtgaccgcat cgtcataaaa gatatcgtga tatcgacgaa tgtggtaccg agatcacaca
     2581 gtgtgcccgc gtcatcaccg acccgatgct cctgctctgc ctaaagaatc caagacggag
     2641 gcggggaaca cccataccac ccatatctcc ctaaaccttc ttggctgtta gccggataag
     2701 accggcagtc tccatcccgc cagaggccga ggacagggtc gaaagcttca gcacggtgtt
     2761 gtagtgcctg aggtaggtca tcaggactgc ggttagatgt cggcggccga ggatgaggat
     2821 ccggtcggtg cattcgcggc ggacggagcc gatccagcgt tcggcgatgg cgttcgcgcg
     2881 gggtgcacgt atcggcgtgc ggatgatttc tatctgttct gaggtgaaca cggtatcgaa
     2941 accggcaacg aacttcgtgt cgcgatcgcg gatcaggaaa cgcagccgct cgacccgatc
     3001 gccaaggtcc atgagcagat tgcgggcttg ctgggtcacc cacgatccgg tcgggtgggc
     3061 cgtgatgccc gcgagatgca ccgtgcggga gccgagctcg atgaagaaca ggacgtagag
     3121 ccggcggagg aataccgtgt cgatggtgaa gaaatcgcag gccacgatcg tggtggcctg
     3181 ggcggtgaga aactcgctcc atgtcaggcc cgcccggcgc ggcgccgggt cgaacccagc
     3241 ccggtgcagg atttgccata cggtggaggg tgccactcgg tgtccgagcc cggtgagttc
     3301 gccgtggatg cggcggtaac cccagtcagg attctcggtc gcgaagcggc gcaccagctc
     3361 tcgcactacc tgggccgtgg gtggtcggcc tggtggtttg gtggccgggt atgtccactt
     3421 gtgggcgacc agttcgcggt gccagcgcag gagcgtcttg ggttgcacga agaacaccga
     3481 ccaacgcatc cgggggagtg cagccgacag cgcggccagt acggcccggt cggctgggcg
     3541 cggtcgcgga cggctgacct ggcggcgtag cacgctgact tcatggcgga gcaccaagat
     3601 ttcgacatcc ttgctcacgt cagtccgagc gcggagcacc agcagctcga ctaaccgacg
     3661 tgccagtaga tacaccagcg aaaagatcac gacgggcatc ctgccggatc actccgaccg
     3721 cgtggccgtc acctgcaccg caggtcaacg acacggaacc gaggttttcg gcacccacag
     3781 ggctgactgc ccaccgcgaa tgtgagtccg acccggttcg gggggtagcg ggttagatac
     3841 cccccgaacg atcacgtcta acggccggct gtcgctgtcc ttacagacca ccgacagccc
     3901 tccaccgtag cgaattgagc ccgcgtgacg ggagatgtgt aggtcgggtc tgccgtgcac
     3961 gctgtcgtgg ccgaaccgca atgtgcggtc gtagcctcgc ccgaaggtga aggggctggc
     4021 cagggcgcaa cgcggcgacc tggtggccca ggaaacggac c
//
LOCUS       DASVXZ010000285         1644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_390007, whole genome shotgun sequence.
ACCESSION   DASVXZ010000285 DASVXZ010000000
VERSION     DASVXZ010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390007"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..1523
                     /locus_tag="VF788_05775"
     CDS             222..1523
                     /locus_tag="VF788_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011895475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8933689.1"
                     /translation="MGKNYQSDKRETSVPAVSEQVSVALGELVGEVREGLLALAVGTG
                     LQVLTAMMEADVIAACGPKGRHDPARTATRHGHEAGSVSLGGRRVPVQRPRMRATDGS
                     GELAVPTYELFAGTEVLGRMAMERMLAGLSTRRYPVGLEPVGSRVEEAAVATSKSAVS
                     RRFVAATETALAELLAADLSGLDLVALMVDGVHFGEHCCVVALGIDIDGTKHPLSLVE
                     GSTENATLVRELLVGLRERGLNVTRPILVVIDGSKALRRGVVDVFDHPVIARCQLHKI
                     RNVEDRLPKKLRSVVAKRMRAAYRAGTALAAQAQLQALAGELEPTHPSAAASLREGLE
                     ETLTVLRLGVSPTLARSLRSTNCVESMIRIARDHSRNVKRWRNGQMALRWCAAGLVEA
                     RAQFRRVNGHLHLRALRAALKRHVAAENVGSPGNNETVTAA"
BASE COUNT          273 a          548 c          565 g          258 t
ORIGIN      
        1 cgaccgggcc gcctaccgtt cctacgcgaa caccgaacgc cacacactct ccgggcacgt
       61 gcacaccacg ttcgaccgcc agtcctcgcc ccacgacaaa cactgatcaa cgaggttgtc
      121 cccgggctcg tagatttcag gcggcggtcc cccgtctggt gcctgccgtg cggtaggcac
      181 tcgggtggtc gaccaagaac acctcgaaga aggggaccgc cgtgggaaag aactaccaga
      241 gcgacaagcg tgagacgagc gtgcccgctg tgtcggagca ggtgagcgtg gcgttgggtg
      301 agttggtcgg tgaggttcgc gaggggttgc ttgccctcgc ggtcggcacc ggcctgcagg
      361 tattgaccgc gatgatggag gccgacgtca tcgcggcgtg tgggccgaag ggccgtcacg
      421 atccagcgcg cacagcgacg cgccacggcc acgaggccgg ctcggtaagt ctgggcggac
      481 gccgggtgcc cgtgcagcgg cctaggatgc gcgccaccga cgggtctggg gagttggcgg
      541 tgccgaccta tgagctgttt gccggtaccg aggtgctcgg gcggatggcc atggagcgga
      601 tgctggccgg gttgtccacg cggcgctacc cggtggggct cgaaccggtc ggttcccgtg
      661 tcgaggaagc cgcggtggct acctcgaagt cggcggtctc gcgccggttc gtcgcggcca
      721 ccgagaccgc cctggccgag ctgctggccg ctgatctatc cgggctggat ctggtggcgc
      781 tgatggtcga cggggtgcac ttcggcgagc actgctgcgt ggtcgccctg ggcatcgaca
      841 tcgacggaac taagcacccg ttatcgctgg tcgaaggctc caccgagaac gccaccctgg
      901 tccgcgagct gctggtcggg ctgcgcgagc gcggcttaaa cgtcacccgc cccatcctgg
      961 ttgtcatcga cggatccaag gcgctgcgcc gcggtgttgt cgatgtgttc gaccacccgg
     1021 tgatcgcccg gtgccagcta cacaagatcc gcaacgtgga agaccggcta ccgaagaagc
     1081 tacgctcggt tgtcgccaag cggatgcggg ccgcctaccg cgccgggacc gccctggccg
     1141 cccaggccca gctgcaggcg ctggccggtg agctagagcc cacccatccc agcgcggcgg
     1201 cgtcgttgcg cgagggattg gaggagacgc tgaccgtgct gcgcttaggg gtgtcgccaa
     1261 ccctggcccg atccttgcgc agcaccaact gcgtggagag catgatcagg atcgctcggg
     1321 accactcccg caacgtcaaa cgctggcgaa acgggcagat ggccctgcgc tggtgcgccg
     1381 ccggcctagt cgaagcccgc gcccagttcc gccgagtcaa cggtcacctc cacctgcggg
     1441 cgctgcgggc agccctcaaa cggcatgtcg cagccgagaa tgtcggcagc ccaggcaaca
     1501 atgagaccgt gaccgccgcc taacgatcaa cggatcgccg tcgaaatcta cgacggtcgg
     1561 gacatcctcc aagtcctccg cgtccggccg gttgccaacc ttggcgaaca tcagccgata
     1621 aatccgcgcg acgttgtccc ggta
//
LOCUS       DASVXZ010000286         9718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_210866, whole genome shotgun sequence.
ACCESSION   DASVXZ010000286 DASVXZ010000000
VERSION     DASVXZ010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9718
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210866"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /locus_tag="VF788_05780"
     CDS             complement(<1..430)
                     /locus_tag="VF788_05780"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEX8933690.1"
                     /translation="MWSDLERPPLRESELRRALVTPVGPYAALDVVESVPSTNTVLAA
                     AARAGAPDRTVLVAEHQSAGRGRAARNWVAPPRSGLTLSVLLRPTEVPRTRWSWLPLL
                     VGVALCRTVSTLSELPAVLKWPNDLLLGAHRRKAAGILAEV"
     gene            464..2059
                     /locus_tag="VF788_05785"
     CDS             464..2059
                     /locus_tag="VF788_05785"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005443579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEX8933691.1"
                     /translation="MEPDVHTTTGKLADLLRRHEEAVDAGSSRAAARQHVKGRKTARE
                     RIDLLLDAGSFIELDELARHRCTTFGQQGNRPYGDGVITGYGTIDNRPVCVFSQDASV
                     FGGSLGEVYGEKIVKVMDLAMRTGCPIIGINEGGGARIQEGVVSLALYGEIFLRNTHA
                     SGVIPQISLIMGFCAGGHVYSPALTDFTVMVDQTSAMFITGPDVIRTVTGEEVGFEEL
                     GGGRTHNTKSGNAHYLGTDEEDALSYVKELLSFLPSNNLSEPPVFDAADISHGPIADT
                     LTDSDRELDTLIPDSAKAPYDIHEVITRVVDDGEFLEVHELFAPNIVVGFGRIEGRSV
                     GIVANQPTQLAGCLDIDASEKAARFVRTCDAFNVPVLTFVDVPGFLPGTGQEWNGIIR
                     RGAKLIYAYAEATVPTVTVITRKAYGGAYDVMGSKHLGADVNLAWPSAQIAVMGASGA
                     ANILHRKELASAAADEVDALRARRQQDYEDALLNPYVAADRGYVDSVIPPSHTRAYVA
                     RALRMLKDKRQTLPPKKHGNIPL"
     gene            2117..2305
                     /locus_tag="VF788_05790"
     CDS             2117..2305
                     /locus_tag="VF788_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007031933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit epsilon"
                     /protein_id="HEX8933692.1"
                     /translation="MLGIVRGEPSDEELAALTVALAALADIAVPEPPGRPSAWLDRAY
                     QLRRPVHPGTGAWRQFKT"
     gene            complement(2295..3407)
                     /locus_tag="VF788_05795"
     CDS             complement(2295..3407)
                     /locus_tag="VF788_05795"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF010041.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEX8933693.1"
                     /translation="MSQSLTIGVEEEFFAIDPSGRRLLGDTRLLLESAYTRQADRENP
                     SYGEEIRPCMIESRTGICRNLGQVRTEISNLRGGLVQAADETGSWIAAAGTFPLADWR
                     TQGFVPKPRYEHTAKTYAQLAGEHVICACHVHVGVEDREAAIHVMNQVRPWLPVLAAL
                     SSSSPFWMGEDTGYASYRSMIWERWPMAGMPPTFRSYDEYKKRVAALIDTGTIADAGQ
                     AFWDIRPGTRYQTVEFRIADSCTTVDEIVVQAGLSRALVQTCLNELEHGVINPDACPE
                     LLRAAKWRAARFGLTGSLLDPISAELVPAHSLVDRLLKYVRPALDETRDWGEMTALVE
                     RTKRLGSSAERQRRVLSETNRLEDVVDLLVKETATF"
     gene            complement(3434..4387)
                     /locus_tag="VF788_05800"
     CDS             complement(3434..4387)
                     /locus_tag="VF788_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX8933694.1"
                     /translation="MEVMIGAPQPALESGLFSLSDMDSTEIHHLVDRSTELFRDPHAH
                     SRPLAGTDIGVLFTKTSTRTRTAFSVGARRLGASLVSYGPGDLQLNTGESLRDTGRIL
                     GAMLDGLVARTAGPLDELRELSRHGRIPVVNAMAAEEHPSQGICDLATMRLHLGELTG
                     VTVLYIGEGNNTAVALAHGLARISGSTLTLATPPGYSITEREIHTARTAGKSVGATIT
                     TVLSMDELPSCVDIVYTTRWQTTGTAKPDPDWREVFRPFHVSEELLARWPAALFMHDL
                     PAHRGDEVSGSVLDGMRSIAWNQAAMKLTSAMAILEWCMSG"
     gene            complement(4471..5494)
                     /locus_tag="VF788_05805"
                     /pseudo
     CDS             complement(4471..5494)
                     /locus_tag="VF788_05805"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
     gene            complement(5617..6582)
                     /locus_tag="VF788_05810"
     CDS             complement(5617..6582)
                     /locus_tag="VF788_05810"
                     /inference="COORDINATES: protein motif:HMM:NF025033.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8933695.1"
                     /translation="MPNVSRVYDYEHLTERDLIPPTSPRVFFEPADTEIGVWVARDLI
                     TECCSVLDLGSGSGAAAAAMARAGAGRVHGVDAGAETVAWATEHYASRDGDCRVTFAH
                     ADFVRLSANDLLATAPAPLPRPLVVTSNPPYVPLAAQAGSLRHSISGGVDGLRLAPAI
                     IGHGSALGCDLGLTIGSYSSPGKAVRLLESAGYWIHAVTLCPLPLGEFTLRNLEQTLA
                     LEERGEAVLWRTAQDTPSYFIVGLACRWMDMAGRGARRRQDPGGVQPPERLTGEGLLH
                     LLQTAARSHTVELEALDGLVRLDSDGWSGSLRILVLPGATARHHW"
     gene            complement(6765..7682)
                     /locus_tag="VF788_05815"
     CDS             complement(6765..7682)
                     /locus_tag="VF788_05815"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEX8933696.1"
                     /translation="MKSPLEGWHDKAGVRVDPRRVLNAEMADGRTLFPEKLIPYLAHP
                     HMRSLDLDEHRRVVARHLYQYLQFTTHFETRVVNRATERIANGTTGLDLDPSVRLDAY
                     KIYCDEAYHALYSYDVVAQVEAVTRIKVPEYDFTPFLNRLDDVGRQAMPGETLLVQLL
                     QVVVFETLVTALLKDIPSDPQVVDVVRETVRDHAEDEGRHHIYFSRFFRELWTDLDAG
                     MRRKTAHCLPELIHRSLAPELAPVRRSLELTSLAREEIDSVLADSYPAARVSAGIRSS
                     ARHSIRLFESVGVLDVPGAREAFEGAGLR"
     gene            7950..8393
                     /locus_tag="VF788_05820"
     CDS             7950..8393
                     /locus_tag="VF788_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX8933697.1"
                     /translation="MGTIAFEDLSPGTMIDLGEIKVDREEMLAFNQRFDPQPFHLDED
                     AAKRSVLGGLCASGWFTVCLWMRTYVETVLADSTSQGSPGGRDLSWPAPVFPGDLLRM
                     RLEVLGARRSRSRPGLGLVEIAGSALRGDDYVLRMTFTGMFSTRG"
     gene            8386..9012
                     /locus_tag="VF788_05825"
     CDS             8386..9012
                     /locus_tag="VF788_05825"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012796087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEX8933698.1"
                     /translation="MADRRLILASASQGRLGVLRSAGIDPVVRVSGVDEDALAATLTG
                     ATPAEVVTALASAKADAVAADIAGEHPDAVIVGCDSMLHIGGELIGKPGCVDAARRRW
                     QAMAGGTGELLTGHAVVRLHEGVVSATASGAQTTMIHFSNPATEEIDAYVGTGEPLQV
                     AGGFTLDGRGGWFVNSINGDPSSVIGISLPLTRRLLAEVGVSVTSLWS"
     gene            9121..9294
                     /locus_tag="VF788_05830"
     CDS             9121..9294
                     /locus_tag="VF788_05830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933699.1"
                     /translation="MALLANAGRRAEEAAQEKLNVIAEALAELMSSGARQDPDLRGAA
                     DRLREAVGLEGRH"
     gene            9441..>9718
                     /locus_tag="VF788_05835"
     CDS             9441..>9718
                     /locus_tag="VF788_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933700.1"
                     /translation="MRVLAATGDTWGISGPVFLELYAALAIITGIITVLARRSLARSH
                     APAPAPGTDLVDPDYVAYLHDGPELTVLAALSALHVAGRLTSAGPRRV"
BASE COUNT         1755 a         3146 c         3110 g         1707 t
ORIGIN      
        1 cgacctcagc caagatccca gctgccttgc gccggtgggc tcccagcagc aggtcattgg
       61 gccatttcag caccgcgggc agctcgctta gcgtgctgac ggtccggcac agagccactc
      121 ccaccaggag tgggagccaa ctccagcgag tcctcggcac ctcggtgggc cgcagcagca
      181 ctgagagcgt gagccccgag cggggcggcg ccacccagtt gcgcgcggcc cggccacgcc
      241 ccgcactctg gtgctcggcg accagcacag tgcgatctgg cgcaccagct cgtgccgccg
      301 cggccagcac ggtgttcgtc gagggcaccg actcgacgac atccagcgcg gcatagggcc
      361 ccaccggcgt taccagagca cgacgaagct cgctctcgcg caggggcggt cgctcaagat
      421 cggaccacat gatctccaga cgctacctct agggtcggca gccatggagc cggacgtcca
      481 caccaccaca ggcaagctgg ctgatctgct gcgtcggcac gaagaggcgg tggacgcggg
      541 gtcgagtcgg gcggcggcgc gccagcacgt caagggccgc aagaccgccc gggagcggat
      601 cgacctgtta ctggatgcgg gatcgttcat cgagctcgac gagctggccc ggcatcgctg
      661 caccaccttc ggccagcagg gcaaccggcc ttatggcgac ggcgtgatca ccggctacgg
      721 gaccatcgac aaccgcccgg tgtgcgtatt cagtcaggat gcgtcggtgt tcggcggcag
      781 cctgggcgag gtgtacggcg agaagatcgt caaggtgatg gacctagcga tgcggaccgg
      841 ctgcccgatc atcggaatca acgagggcgg tggcgcccgg attcaggagg gagtcgtctc
      901 gctggccctc tacggcgaga tcttcctgcg caatacccac gcgtccggcg tgatcccgca
      961 gatctcactg atcatgggtt tctgcgcggg cgggcacgtc tactccccag cgctgaccga
     1021 cttcaccgtg atggtggacc agacctcggc catgttcatc accggtccag acgtgatcag
     1081 gacggtgacc ggtgaggagg tcggcttcga ggagctcggc ggcgggcgga cgcacaacac
     1141 caagtccggc aacgcgcact acctcggcac cgatgaggag gacgcgctgt cctacgtcaa
     1201 ggaactgctg tcattcctgc cgtcgaacaa cctctccgag ccgccggtgt tcgacgctgc
     1261 ggacatcagc cacggaccga tcgccgatac cctcacggat tccgaccggg agctggacac
     1321 gctcatcccg gactcggcga aagctcccta cgacatccac gaagtgatca ctcgcgtcgt
     1381 cgatgacggc gagttcctcg aggtgcacga gttgttcgcg ccgaacatcg tcgtcggctt
     1441 cggccgcatc gagggccgca gcgtggggat cgtggcgaac cagcccaccc agctggcggg
     1501 ttgcctggat atcgacgcca gcgagaaggc cgcccgcttc gtccggacct gcgacgcgtt
     1561 caacgtgccg gtgctcacct tcgtggacgt gcccggcttc ctgcccggca ccggccagga
     1621 gtggaacggc atcatccggc gcggcgccaa actgatctat gcctacgccg aggccaccgt
     1681 gcccacggtg acggtgatca cccgcaaggc ttacgggggc gcttacgacg tgatgggctc
     1741 caaacacctg ggtgcggacg tcaacctggc ctggccctcg gcacagatcg cggtgatggg
     1801 cgcctcaggc gcggccaaca tcctgcaccg caaggaactt gccagcgctg cggccgacga
     1861 ggtcgacgcg ctgcgggccc ggcggcaaca ggactacgag gacgccctgc tcaaccccta
     1921 cgtcgccgcc gaccgcggct acgtcgactc agtgatcccg ccatcccaca cccgtgccta
     1981 cgtcgcccgg gcgctgcgca tgctcaaaga caagcgccag accctgcccc cgaagaagca
     2041 tgggaacatt cccctgtgag tggtgttgcg agctatccct cgtgttgcca ctcacgggtt
     2101 acggaggtgg gtcgcgatgc tggggatcgt gcggggtgaa ccatcggatg aggagcttgc
     2161 cgcgctgacg gtggcgctcg ccgcactggc agatattgcg gttcccgagc cgccagggcg
     2221 gccttcggcc tggctcgatc gtgcctacca actgcggcgc ccggtgcatc ccggtaccgg
     2281 cgcatggcgt caatttaaaa cgtagctgtt tcttttacca ggaggtcgac cacatcctcc
     2341 agacggtttg tttcggacag gactcgccgc tggcgctcgg ccgaggatcc gagacgtttc
     2401 gtacgctcga cgagtgcggt catctcgccc cagtccctgg tttcatccag agccggacgc
     2461 acatatttca atagccgatc cactagcgaa tgagccggta cgagttcggc tgaaattgga
     2521 tccagcaggc tgccggtgag gccgaaccgg gcggcgcgcc acttcgccgc gcgcagcagt
     2581 tccgggcaag cgtccgggtt gatgactccg tgctcgagtt cattcaggca cgtttgcaca
     2641 agtgcgcgag acagcccggc ttggacgacg atctcgtcaa cggtggtaca cgaatcagca
     2701 atgcggaatt cgacggtctg gtaccgggtg ccgggacgga tgtcccagaa agcctgaccg
     2761 gcatcagcaa ttgttccagt atcgatgagc gcggcgaccc gcttcttgta ctcgtcgtat
     2821 gatcggaatg tgggaggcat ccctgccatc ggccatcgct cccagatcat gctgcgatag
     2881 ctagcgtagc cggtgtcctc gcccatccag aacggggagc tggacgacaa tgcggcgagg
     2941 acaggtagcc agggacggac ctggttcatc acgtgaatgg ctgcttcgcg atcctcgact
     3001 ccgacgtgta cgtggcaggc gcagatcaca tgttcgccgg ccagctgtgc gtaggttttg
     3061 gcggtgtgct cgtaccgcgg tttcggcacg aagccctgtg tacgccagtc agcaagcgga
     3121 aaagtgccag ctgcggcgat ccagctgccc gtttcgtcag ctgcttggac caagccaccg
     3181 cggagattac tgatttcagt ccgcacctgg cccagattcc ggcaaattcc cgttcggctt
     3241 tcgatcatgc atggtcgtat ctcctcgccg tagctggggt tctcgcgatc ggcctgtcgt
     3301 gtgtaagcgg attcgagaag taatcgcgtg tcccccagta gtcggcggcc gctgggatca
     3361 atcgcgaaga attcctcctc tactccgatc gtcaatgatt gactcacggc tcaggaatcc
     3421 ctttcttcat gcgctaaccg gacatgcacc actccaggat cgccatcgcg ctggtgagct
     3481 tcatggcagc ctggttccag gctatcgaac gcatcccgtc cagcacgctt ccggacactt
     3541 cgtcccctcg atgggcggga aggtcatgca tgaacagcgc tgcgggccac cgagccagta
     3601 gttcctcgct gacatggaat gggcgaaaca cctcgcgcca gtcaggatcg ggtttcgcgg
     3661 tcccggtggt ctgccaccgg gttgtgtaga cgatgtcgac gcaggacggc agttcgtcca
     3721 tggagagcac tgtcgttatc gttgcaccga ccgactttcc cgccgtcctg gcggtgtgta
     3781 tttcgcgctc ggtgatgctg tagccagggg gggtggcgag agtgagtgtg ctcccgctga
     3841 tcctggccag accgtgggcc aaggccactg ccgtgttgtt accctcaccg atatacagaa
     3901 ccgtcacccc ggtcagctcg ccgaggtgca accgcatggt cgccaggtca cagatgccct
     3961 ggctggggtg ttcctcggcc gccatggcgt tcacaaccgg gatacggcca tgccgggata
     4021 actcgcgcag ctcgtcgagc ggccccgccg ttcttgccac cagcccatcg agcatggccc
     4081 cgagaatccg tccggtatcc cgcagcgact ccccggtatt cagctgcagg tctccgggac
     4141 cgtagctgac cagcgaggct cccaggcgac gggcgccgac ggaaaaggcg gtgcgggttc
     4201 gggtagaggt cttcgtgaaa agcaccccga tatcggtacc cgccagtggg cggctgtgcg
     4261 cgtgggggtc gcgaaacaat tcagtggatc ggtccacgag atggtggatc tcggtggaat
     4321 ccatatcact gagcgagaat agaccggact cgagtgcggg ctgcggggca ccaatcatca
     4381 cttccatgac tctcctcgat tcaatgcgct tccagtaact gccagccggg ccggtcgacg
     4441 gcggatcggc tctgaaagga cgctccggcg tcatcgggcg ccactcgctt cccgagttcc
     4501 gccgtgcacc cgcagcaccc ttgcgttcgg tgtaagtgat cgggtagcga tgttctcctc
     4561 tcgccactgc gccgagtaca ccgttccctg ataacggtca cccccgtcag ggcacaccac
     4621 agcgatatcg gagtcgtcat aagggttgag gtgaaaccac cgtaacgcgg ccgctatcaa
     4681 cgctccagag ctgcccccca gggtgatccc tgtctcatct aagatccata ggcaggcggc
     4741 cacggcgtcc gcagctgaaa cgatgacccg cggcgccgct acagagtgcg caaaagccga
     4801 ccgctggctg gacccgatgc cagccaggat tcgttttccc ggtatatcat cggcgagcgc
     4861 cagggatccc tcgacatcca ctcccaccac ggtccatgga accccgtgta accggacgaa
     4921 ctggtgaaaa cccgctaacg tgccacctgt ggagaccgcc agcaacaccg tggccggacg
     4981 gtgaagttga tcccacaact ccggtgcggt gtgctcaaga tgtgcccgcg gattcgcgac
     5041 gttctcgtac tggttggtcc agaccagctt gggccgcatc cgaatctgct cacggacgta
     5101 cgctaaacgg ttgagtagat aaccaccttt ggagtccgca cgatcaatca taacgactcg
     5161 ccccataaca gcgcatcgtg tcgatcgacg tccggctagt gcgtggttca acgactgcgg
     5221 taaacggtac gccgtgctcc gcgcaccggg cagccagcgc gacgcctaga tttccggacg
     5281 tggactcgat gaccccttct gccggataca cctgttctcg aacagattcc cagagcgtcg
     5341 ccgccgtacg gtccttgagc gaaccatggg gattatggca ttccagcttc agccagatcc
     5401 tgcgatgaac tccggccact tccagatcga gcgttacaac gggagtccgg ccgggaaaga
     5461 ccttctgaga tgccgaagag tgcagaaccg ccatgatact ccttcgatcg cgtggtcagg
     5521 aatcgaatct ctttgcagga cgacgctgat agcgtccacc gatgaccgtc aactgccgag
     5581 ggatgaagcc gacaccgtgc agcatccgca cggcgcttac cagtggtggc gcgcagtcgc
     5641 gcctggcagg acaagaatcc gcaacgatcc ggaccagcca tccgagtcca gcctgaccag
     5701 gccgtccagc gcttccagtt cgacagtgtg cgagcgcgcc gcggtctgta acagatgcag
     5761 caacccttcg ccggtgaggc gctcaggggg ctgtactcca cccggatctt gccgacgccg
     5821 tgccccccgc ccggccatgt ccatccaccg gcatgcaagg ccgacgatga agtaggacgg
     5881 cgtgtcctgg gcggtccgcc acaggaccgc ctcaccccgc tcctccaggg ccaaggtctg
     5941 ctccaggtta cggagagtga actcccccaa cggcagcggg cacaatgtca ccgcgtggat
     6001 ccagtacccg gccgattcca gtagcctgac cgccttgccc gggctggagt agctcccaat
     6061 ggtgagcccc aggtcgcagc ccagcgcgct accgtgcccg atgattgccg gagctagtct
     6121 cagcccgtca acccccccgc tgatcgagtg gcgtagcgag ccggcttgtg cagcgagggg
     6181 gacatagggc gggttactgg tgacgaccaa tggccgcggc agcggggcag gcgcggtggc
     6241 cagcaagtca ttggcagata gccggacgaa gtccgcatgg gcgaaggtga ctcggcagtc
     6301 accgtcgcgg gacgcgtagt gctcagttgc ccatgccacc gtctccgcgc ccgcgtcgac
     6361 gccatggacc cgccccgctc cagcgcgggc catcgcagcc gccgcagcgc cgctgcccga
     6421 gcccaagtcc agcaccgagc agcactcggt gatgagatcg cgggctaccc acacgccgat
     6481 ttcggtgtcg gccggctcga agaatacccg gggggacgtc ggcgggatga gatcacgttc
     6541 tgtcaggtgc tcgtaatcgt agacgcggga aacattcggc acggagacct cgatccgtga
     6601 gaggggcagg gcaggatctg gaccggtgtc atttggcacc gtgggaaagg gacggtggct
     6661 ggtcgtgcac caggaactaa ccggccattc acgtctgtgt gtcgtggacc tccacgatgt
     6721 tttcgtgttg attgcttcac ctttcccgat tccctatcgg ttgttcatcg aagcccagcg
     6781 ccttcgaacg cctctcgggc gcccggaacg tcgagtaccc caacagactc gaacaggcga
     6841 atgctgtgcc tcgccgaact cctgataccc gcgctcaccc gagcggctgg gtaggaatcg
     6901 gcgagtacgg agtcgatctc ctcgcgcgcc agggaagtca gttcgagtga ccggcgcact
     6961 ggcgcgagct ccggagcgag gctgcggtgg atcagttccg gcaagcagtg tgcggtcttt
     7021 cgccgcattc cggcgtcgag gtcggtccag agctcccgga aaaaccggga gaagtagatg
     7081 tggtggcgac cctcgtcttc agcatgatcc cgcacggtct cgcggacgac gtcaaccacc
     7141 tgtggatcgc tgggtatgtc cttgagaagc gctgtcacca gggtttcgaa gaccaccacc
     7201 tggaggagtt gaaccagtaa ggtctcccct ggcatggcct gccgcccgac gtcgtcgagc
     7261 cggttcagaa acggcgtgaa gtcatattcc ggaaccttga tccgggtgac cgcttcgacc
     7321 tgagcgacca cgtcgtagct gtacagcgcg tggtaggcct cgtcacaata gattttgtaa
     7381 gcatcaagcc gaacgctggg atccaggtcg agcccggtgg tcccgttggc gatgcgttcg
     7441 gtcgcccggt tcaccacccg cgtctcgaaa tgagtggtga actgcaggta ctggtagagg
     7501 tgacgggcaa caacccgccg gtgctcgtcg aggtcgagcg agcgcatgtg cggatgggcc
     7561 aggtagggaa tcagtttctc agggaacagg gtgcgcccat ccgccatctc ggcgttgagc
     7621 actcggcggg gatcaactcg tacgccggcc ttgtcgtgcc atccttccaa tggtgatttc
     7681 atatcgttgc cccgaggtca gatgtgctca cctggcgcga caaagacaaa aggaaaggga
     7741 ccgtgagagc gatcacgacc tagccgtgat cgacgtctga atagctttaa taacccgacc
     7801 agcgtcgccg gcatagcacc actcccttgt aggccgaatc aacagtaacc cagcatgagc
     7861 agctctgcga gttgtgggaa ttccggctgg aaggagtgcc gggtggatca ccgcaccgcg
     7921 ggtgccacgc tgatggcagg atcggcggta tgggcacgat cgcgttcgag gacctgagcc
     7981 cgggaaccat gatcgatctg ggggaaatca aggtcgatcg ggaggagatg ctcgcgttca
     8041 accagcggtt cgatccgcaa ccattccacc tggacgagga tgcagcgaag cgctcggtgc
     8101 tcggcgggct gtgcgcgtcg ggctggttca ccgtgtgcct gtggatgcgc acgtacgtgg
     8161 agaccgtgct ggccgattcc acctcacagg gctcgccggg tgggcgagac ctgtcctggc
     8221 cggcaccggt gtttcccggt gacctgctgc gcatgcgcct ggaggtgctc ggtgcccgcc
     8281 gctcccggag ccgtcctgga ctcggcctgg tggagatcgc cggctcggca ctgcgtggcg
     8341 acgactacgt gctacggatg accttcaccg gcatgttctc cactcgtggc tgaccgtcgc
     8401 ctgatcctgg catcagcctc ccaaggccga ctcggcgtgc tccgcagcgc cgggatcgat
     8461 ccagtggtac gggtgtccgg agtggacgag gacgcgctag ccgccaccct gaccggcgcg
     8521 actccagcgg aagtggtaac cgcgctggcc tcggcgaagg ctgacgcggt tgcagcggat
     8581 atcgccggcg agcaccccga cgcggtgatc gtcggatgcg actcgatgct gcacatcggt
     8641 ggcgaactga tcggtaagcc cggctgtgtg gacgcggcgc ggcggcgctg gcaagcgatg
     8701 gccggcggca ccggcgagct gctcaccggg cacgccgtgg tgcgcctgca cgagggcgtc
     8761 gtcagcgcga ccgcgagcgg cgcccagaca actatgatcc acttcagcaa cccggctacg
     8821 gaggaaatcg acgcctatgt cggcaccggg gagccgctgc aggtcgccgg cgggttcacg
     8881 ctggacggcc ggggcggctg gttcgtgaac agcatcaacg gcgacccgtc cagcgtgata
     8941 ggcatcagcc tgccgctgac ccggcggctg ctcgccgagg tcggcgtgtc cgtcacctct
     9001 ctctggtcct gacgccggca tcggtgctct tccatccggc gacccggtcc tctgcgggat
     9061 gacttcaagg aatggcagac ggtcattcac acagtcacga gtgtccttac cctgttgctg
     9121 gtggcgctgc tcgcgaacgc cggtcgccgc gcggaggaag ccgcccagga gaagctcaac
     9181 gtcatcgcgg aggcgctggc cgagctgatg agttcgggag cgcgtcagga tcctgatctc
     9241 cggggagccg cggaccgcct acgcgaggcc gttggcctcg aagggcgcca ttgaggtctg
     9301 ggcgcgacag aaattgatca ggtggggtgc acctcccgtg ctgagggctg ccctcgcaat
     9361 cgatagacag aaaccggcat tcactcacac gatgtaccgc gatcgcacag gttttcacgg
     9421 cacagcgtaa ggaggccggg atgcgcgtac tcgccgccac cggcgacacc tgggggatca
     9481 gcgggccggt ttttctcgag ctctatgccg cgctggccat catcaccggc atcatcacgg
     9541 tcctggctcg tcgctccctg gcccgcagtc acgcaccagc gccggcacca ggaaccgacc
     9601 tggtcgaccc cgattatgtc gcataccttc acgacgggcc agaactgacc gtgctcgcgg
     9661 cgctgagcgc cctgcacgta gctggtcgtc tcacctcagc aggcccgcga cgcgtcca
//
LOCUS       DASVXZ010000287         1931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1555569, whole genome shotgun sequence.
ACCESSION   DASVXZ010000287 DASVXZ010000000
VERSION     DASVXZ010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1555569"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            262..>1931
                     /locus_tag="VF788_05840"
     CDS             262..>1931
                     /locus_tag="VF788_05840"
                     /inference="COORDINATES: protein motif:HMM:NF025182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4185 domain-containing protein"
                     /protein_id="HEX8933701.1"
                     /translation="MDLGAAGPRPAGRHDLRRGGERAAAHSSAVTPRVYVSLIQSDFG
                     RARHGNFEAVIVEGNQLWHWSRDNSTNDFGPWVRGQRITGAHDEVAGPGCIIQSTSLP
                     GKHGNFEVVVPLRRADGALELHHFYRDNSDARLPWIRGQRITGEQDEVAGAGCIIQSA
                     PRIGQHGDFEVVVPLRRADGALELCHFYRDNSDAHLPSPLRQRLTMSLHVPWLRGRRI
                     TGEQDNVAGPGCIIQSAASTGQHSRFEVVVPLHLNDDSIELRHFFQNSSDADTPWTST
                     QFITQSCAGLGGIIQSSFDSLAQGNFEVLVDERASSVVHYWHPNAQADEVWIRTDRFT
                     ILEPHPLLAHRAQKIVQLTGEFDREGWNGKGTPRHAFNRTESRFGIIGTDLGVSFAHH
                     DRLYFLFGDTWRVGHSTPNDDLDSIAFSTDRDADDGIELTFLPRPPLVPGITLSAFEV
                     PLDGISCNGQMYVFFSTDHRRAGIYTLMGRSVLARSDNDGLDFTFLYELSRFKFINVS
                     TMIVDPHEHGLPGDGPQLVVFGSGRYRSSDVYLAVKPVAQLEEPGGFL"
BASE COUNT          365 a          643 c          559 g          364 t
ORIGIN      
        1 ctggcggtgg tcgcgatgtt cgccgtcggc gccggcatcg ggatcctcaa cggccgctcc
       61 gcgctacgct ccggaatacg ccagctcatc gccggtggtc tcgccgccgc tgtcaccttc
      121 ggcgtcgggc acctcatcgg caccgccgtt tcctgaggcg ctggagatca tccgggccgc
      181 tccgggccgt cgccagctag ctcgataagg taccgagatg ctggtggaga ggcggctcgg
      241 gagtcagttt gctcataccg ggtggatctt ggtgcagcgg gtccacgccc ggcaggtcgt
      301 cacgacctgc gcagaggcgg cgagcgggca gctgcccact ccagcgctgt gacgcccagg
      361 gtttatgtca gtctcatcca atccgacttc ggacgcgctc gccacggtaa tttcgaggcc
      421 gttatcgtcg agggcaacca gctgtggcat tggtcgcgcg acaactccac caatgacttc
      481 gggccctggg ttcgcgggca acggatcacg ggtgcgcacg acgaggtggc cggacccggc
      541 tgcatcatcc aatccacttc cctgccgggc aagcacggca acttcgaagt ggtcgtaccc
      601 ttacgacgcg ccgacggcgc tctggaactg caccacttct accgcgacaa cagcgacgcc
      661 cgactgccct ggattcgcgg ccagcgaatc accggcgaac aagacgaggt ggccggagcc
      721 ggctgcatca tccaatccgc gccccgcata ggacagcacg gcgacttcga agtggtcgta
      781 cccttacgac gcgccgacgg cgctctggaa ctgtgccact tctaccgcga caacagcgac
      841 gcgcacctac cttcaccgct gcgacagaga ctgacgatga gcctgcacgt tccctggctg
      901 cgcgggcgac gaatcaccgg tgaacaggac aatgtggccg gacccggctg catcatccaa
      961 tccgctgcca gtacagggca acactctcga ttcgaggtcg tggtgcccct acacctcaat
     1021 gatgattcga ttgagctccg tcatttcttc cagaacagta gcgacgccga cacgccctgg
     1081 accagtactc aattcatcac ccaatcttgc gccgggctcg gcggcatcat ccagtccagt
     1141 ttcgactcgc tggcgcaagg aaatttcgag gttctcgtcg acgagcgtgc cagctcagtc
     1201 gtccattact ggcatccgaa cgcccaagcc gacgaggtgt ggatcaggac ggatcgtttc
     1261 accatcctcg agccgcatcc gctacttgcc caccgtgccc agaaaattgt tcaactcacc
     1321 ggcgagttcg atcgcgaggg ttggaacggc aagggaacgc cgagacatgc attcaatcgg
     1381 accgaaagca ggttcggcat tatcggcaca gatctcggcg tctccttcgc ccaccatgat
     1441 cgcctctact tcttgttcgg tgacacctgg cgcgtgggcc acagcacccc gaacgatgat
     1501 ctcgattcca tcgctttctc taccgatagg gacgccgacg acggcatcga gttgacgttc
     1561 ctgccacggc cgccgttggt gcccggcatc accctcagcg ccttcgaggt accgctcgat
     1621 gggatcagct gcaacggcca gatgtacgta ttcttcagca ccgatcaccg gcgggctgga
     1681 atctacaccc tgatgggcag atcagtactg gcccggtcgg acaacgatgg ccttgacttc
     1741 actttcctgt acgagttatc acgcttcaag ttcatcaacg tgtcgacaat gatcgtggac
     1801 ccccacgaac acggcctccc cggggacggg ccacagctcg tcgtattcgg cagcggccgc
     1861 taccgctcga gtgatgtcta tcttgcagtc aagccggtag cgcaactcga ggaaccggga
     1921 gggttcctgt t
//
LOCUS       DASVXZ010000288         1600 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_732317, whole genome shotgun sequence.
ACCESSION   DASVXZ010000288 DASVXZ010000000
VERSION     DASVXZ010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_732317"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(263..>1600)
                     /locus_tag="VF788_05845"
     CDS             complement(263..>1600)
                     /locus_tag="VF788_05845"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEX8933702.1"
                     /translation="AHIIDRVLEELDRQGITRARLAEGGGRILTTIDPRAQQLARDAV
                     RTELRGQPSNLHSSLVAIDPRSGAVIAYYGGSDGNGFDLAGGLAWSPGSAFKPFTMLA
                     ALERGIGMYSVYAGQSPLVIDGRSYSNSESINYPKLTLKQAMTQSVNTAFLRLAQDVG
                     AQAVRDAAIQAGIPEQINGKRAMAEPDSGAPGIGITLGQYPVQTIDMAGGYATFAADG
                     MRHEPFLVREYDNSHGSVAYQHLDKPQPAFDETDPARNAQLARNVTATLTDVARSSQI
                     PLAGGRQVAAKTGTSQLGDTGHNSAAWTIGYTPSISTAVWVGDPANSAIKSANGTDIF
                     GRSLPGKTWQRFMNSYLQGTRMEVFPPSKLIGPRPPTTRSPRWRTHDRRNTDPFAPQR
                     DFQGIDPFAPPQLDFRDTEPTPAERSTRPARPQRSNCYPFCQDPVPDNEGLGR"
BASE COUNT          263 a          479 c          537 g          321 t
ORIGIN      
        1 accccagcga ggtgaccggc tagccggtgg gtgttcctga ccggggcggc cggtccatcc
       61 ggtcaggaac acagcacggt cctcgtcggt ccattcccgg ccagccccga acgctgatgt
      121 gcttgctgct cgggacgcac cggcgaacta accggctagt cggcggccgt gttggctgcc
      181 gccgactaca agctgcgcga aggtcttgga tgcctgagtt tgtcatgatg gaactggtaa
      241 tcacgatggc cgctttcaca agtcagcggc ccaagccctc gttgtctgga accgggtcct
      301 ggcaaaacgg gtagcaatta ctgcgctgcg gtctggctgg cctcgttgag cgttccgccg
      361 gcgtgggttc agtgtcccgg aagtcgagtt gtggtggtgc gaagggatca atgccctgga
      421 aatcgcgttg tggcgcgaag ggatcagtgt tgcgccggtc atgggtacgc catctggggg
      481 accgggtagt cggcgggcgc ggaccgatca gcttagatgg agggaacact tccatacgag
      541 tgccttgcag gtacgaattc ataaatcgct gccaggtctt tccgggcagg ctgcgtccaa
      601 agatgtcggt tccgttggcg ctcttgatcg ctgagttggc cggatcgcct acccagaccg
      661 cggtggaaat cgagggggta tagccgattg tccatgcagc ggagttgtgg ccagtgtcac
      721 caagctggct ggttccggtc ttggcggcca cctggcggcc gcctgccaag gggatctgcg
      781 agctgcgcgc cacgtcggtg agggtggcgg tgacgttgcg ggccagctgc gcattgcgag
      841 cgggatcggt ctcgtcgaag gcgggttgcg gcttgtcgag gtgctggtat gcgacgctgc
      901 cgtgcgagtt gtcgtactcc cgtactaaaa agggctcgtg ccgcatgccg tcagccgcga
      961 aggtcgcata cccgccagcc atgtcgatgg tctgcaccgg gtactggccg agggtgatac
     1021 cgattccggg tgccccactg tccggctctg ccatggcgcg cttgccgttg atctgttctg
     1081 ggattccggc ctgaatcgcg gcgtcccgga cggcctgggc tcccacgtct tgggcgagcc
     1141 gcaggaaggc tgtgttgacc gactgcgtca tcgcttgttt caacgtcaac ttcggatagt
     1201 taatgctttc cgagttggaa tacgagcggc catcaatgac cagcggggac tgaccggcgt
     1261 acaccgagta catgccgatg ccgcgctcca acgccgccag catggtgaac ggtttgaacg
     1321 ccgatcctgg actccacgct agcccaccgg ctaaatcgaa cccattgccg tccgatccac
     1381 cgtaataggc gatcacagct ccgctgcgcg gatcgatcgc gaccagcgag gagtgaaggt
     1441 tgctgggctg cccgcgcagc tcggtgcgga ctgcatcgcg cgccagctgc tgggcgcggg
     1501 gatcaatggt cgtcaggatc cggccacccc cttcggccag ccgcgctcgg gtaatgcctt
     1561 gcctgtccaa ctcctccagc acccgatcaa taatgtgcgc
//
LOCUS       DASVXZ010000289         4093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_300327, whole genome shotgun sequence.
ACCESSION   DASVXZ010000289 DASVXZ010000000
VERSION     DASVXZ010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4093
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300327"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..331)
                     /locus_tag="VF788_05850"
     CDS             complement(44..331)
                     /locus_tag="VF788_05850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933703.1"
                     /translation="MGGLLALLSATGLLDENSWCLATWARDGHPDHEAAGRSAASATG
                     HTGAQRLSFPVWAWHWAQPADPRVPWTAARPPDPAASSGRPGQEVRRGRIR"
     gene            complement(345..1160)
                     /locus_tag="VF788_05855"
     CDS             complement(345..1160)
                     /locus_tag="VF788_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933704.1"
                     /translation="MTHLDALAILQELREPPTAGSPAPPVRSGQRWAVWAAEPPNGLV
                     QAEQGSDGGWRLTGIKRWCSGAHACTHALVTAHAPDSGRLFAVDLSGGGVCAGSGGWK
                     GPGMAGSGTEGVEFTAAPAAAVGAPRAYLNRVGFWYGGAVAIGRPLWESARGSALDPH
                     AQAYLGAVDSVLAGAAAMLPAAAEEADRVSDPEADDDASVQLWQRHALWVRAVMEAAA
                     TSTIERVGRALGPRPLRWDTRVELAGLVRIGRSGHLPPAPATGQGRRRRPPSR"
     gene            1211..2092
                     /locus_tag="VF788_05860"
     CDS             1211..2092
                     /locus_tag="VF788_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX8933705.1"
                     /translation="MRPFDDILRLERAEALDRLAAAVRAVVQRVLHNRTLKDALHGVW
                     LGHPLHPALAQIALGSFTSASLIEAVGGGRRESSGLIAVGLASTVPTVAAGWADWSES
                     HEGQQRVGLVHAALNAAAVACFAAALLQRRGGRGTGGLLSLVGGTLSGAGAALGGHLW
                     YRQATGANHGNEVPHVGPGNWQPLGPLAESPLGQPVRRLAGDVPVFVLRNGTAAEVTV
                     LSNRCPHLSAPLHQGQLSTIDGEVCVTCPWHASVFRVRDGVVVHGPATAPVPGFESRG
                     EGVLQVRVRALPGIEAS"
     gene            2098..2763
                     /locus_tag="VF788_05865"
     CDS             2098..2763
                     /locus_tag="VF788_05865"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX8933706.1"
                     /translation="MTGAVLFDIDGTLVDSNYLHVIAWLRAFHEVNHPVDAWRIHRGM
                     GMGSSQLLADLLGEEADRIGSQAKQRHSEHYLRAAPLLRAFDGARELVTAVAQRGARV
                     VLASSAAPDELERLRSVLELEDAVAEITGGGDVEAAKPAPDLIGVALQRAGVPADRAI
                     FVGDTVWDVQACSKAGVRCVCVLSGGISAEELIEAGAVAVYEDCQTLLRELDASLLAS
                     VWS"
     gene            complement(2767..3600)
                     /locus_tag="VF788_05870"
     CDS             complement(2767..3600)
                     /locus_tag="VF788_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEX8933707.1"
                     /translation="MARAIWSGSINFGLVSIPVRLYSATEDHTMHFHQLQRGTADRIR
                     YQRVNERTGREVEYADIVKGRDVGGGDYVIVEPEELDAIAPGRSRTIDITSFVDLDEI
                     DPVYFQKTYWLAPQDEQYARPYALLVEAMARTNRAGIATFVMRGKEYLTAIRADDGVL
                     ALETLFFAAEIRNPAEQLDTLPHDKPARGKELDMAEALIKSMSGSWHPEDYRDTYTER
                     VERLIDDKYRGREIVTAAEPPEPTEMSDLLEALQRSVTTAREGERQPQRQQKVSSPAK
                     A"
     gene            complement(3658..>4093)
                     /locus_tag="VF788_05875"
     CDS             complement(3658..>4093)
                     /locus_tag="VF788_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933708.1"
                     /translation="SSAAAQALAGGRLTSALDPAEGTAELFAGAGALDRNERLPDGSA
                     RGREQLRQDLEQFRSEATDAAAIRDDAQRALTDADQAAQNAVTALQELRVRLEAAERA
                     EHEARRCAQSAQHDFEAADRRAREAQRRVHDLERRLAQHQNR"
BASE COUNT          609 a         1382 c         1400 g          702 t
ORIGIN      
        1 aatcgcttgg tcgccgggat gggtcgacag cggcctgagc tggctaccga atgcgtccac
       61 ggcgtacctc ttggcctggg cgaccgctgg aggcagcggg atccggcggg cgggcggccg
      121 tccacggcac tcgcgggtcc gcgggctgtg cccagtgcca ggcccacacg gggaacgaga
      181 gccgctgggc tccggtgtgg ccagtcgcgc tcgcggcgga gcgcccagcg gcctcgtgat
      241 cgggatgacc gtcccgggcc catgtggcca gacaccaact gttctcgtcg agtaaaccgg
      301 tggcgctgag cagcgccagg aggccaccca cgccgagtac ttcatcatcg ggatgggggg
      361 cgacgacgac ggccctggcc ggtagcgggt gcagggggaa ggtgtccaga gcggccaatc
      421 cggaccaggc ctgccagctc gactcgagtg tcccaacgca acggcctggg tcccaaggcg
      481 cgcccgaccc gctcgatagt cgaagtcgcg gcggcttcca tcactgctcg tacccacagt
      541 gcatgccgct gccacagctg cacgctcgcg tcatcgtcgg cttccggatc actcacgcga
      601 tccgcctcct ccgccgccgc cggcaacatg gcagcggctc cggctagcac actatcgacc
      661 gcgccaaggt aggcctgggc atgcggatcg agcgcgctgc cacgagccga ctcccacagc
      721 ggccgaccga ttgccacagc gccgccgtac cagaaaccaa cccggttcag gtatgcgcgt
      781 ggggctccga ccgccgccgc cggtgccgcg gtgaactcca caccttccgt tccactgccg
      841 gccatccccg gtcccttcca accacccgaa ccggcgcata ccccgccgcc ggaaagatcg
      901 accgcgaaca accgaccgct atcgggagca tgtgcggtga ccagcgcatg agtgcacgca
      961 tgggcccccg agcaccaccg tttaatcccc gtgagccgcc acccaccatc cgaaccctgc
     1021 tcggcctgca ccaggccatt gggcggttcg gccgcccaca cggcccatcg ctgcccggac
     1081 cgcaccggag gcgctggtga accagccgtt gggggctcac gtagctcctg gaggatggcc
     1141 agcgcgtcga gatgcgtcaa tcggtcacca gcggcgtttg atttcgccgt ggcgtgccta
     1201 ctctgcgcgg atgagaccct tcgacgacat tctccgcttg gagcgggccg aggcattgga
     1261 tcggctcgca gccgcggtgc gggccgttgt gcaacgagtg ctgcacaacc ggacgctcaa
     1321 ggacgcgctg cacggggtgt ggctggggca tccgctgcac ccggcgctgg cgcagatcgc
     1381 gctcggctcg ttcacctccg cctccttgat tgaggcggtc ggcggcgggc gtcgtgaatc
     1441 ctccggtctg atcgcggtcg ggttggccag cactgtgccg acggtcgccg cgggttgggc
     1501 ggactggtcg gaaagtcacg agggtcagca gcgggtcggc ctcgtgcacg ctgcgttgaa
     1561 cgcggcagcg gtggcttgct tcgccgccgc gctgctacag cggcgtggtg gccgcggcac
     1621 cggagggctg ctctcgctgg tgggaggaac gttgagcggg gcgggagcgg cgctgggcgg
     1681 ccacttatgg taccgacagg caacgggtgc caaccacggc aatgaggttc cgcatgtcgg
     1741 gccggggaac tggcagccgc tgggcccgct tgcggaatcc cccctcggcc agccagtgcg
     1801 caggctcgct ggcgatgtgc cggtattcgt gcttcgcaat ggcaccgccg ccgaggtcac
     1861 ggtgctgtcc aaccgctgcc cgcacctgtc cgcgccgttg caccaaggcc agctgtccac
     1921 aatcgacgga gaggtgtgcg tcacctgccc ctggcacgcg agcgtgttcc gggtccgcga
     1981 tggtgtggtc gtgcacggtc cggcgacggc accggtgccc ggcttcgaat cccggggcga
     2041 gggcgtgctt caggtgcggg tacgtgctct gccgggcatc gaggcgagtt gactgacatg
     2101 acaggcgctg tgctgttcga tatcgatggc accctggtcg attccaacta cttgcacgtc
     2161 atcgcatggc tgcgcgcgtt ccacgaggtg aaccatcccg ttgatgcctg gcggattcat
     2221 cgcgggatgg ggatgggttc gtcgcaactg ttggccgatc tgctcggtga agaggccgat
     2281 cggattggct cgcaggccaa gcaacgtcac agtgagcact acctgcgggc cgcccccctg
     2341 ctgcgggcct tcgacggtgc gcgggaactg gtgactgcgg tggcgcagcg tggggcaagg
     2401 gttgtcctgg cctcctccgc cgcccccgac gagctcgagc gcctgcgatc ggtcctggag
     2461 ctcgaggacg ccgtcgcgga gatcactggc ggtggagatg tcgaggcggc caaaccggca
     2521 cctgacctga tcggcgtcgc cctgcaacgc gcgggagtac ccgcggaccg agcgatcttc
     2581 gtcggcgaca cggtctggga cgtgcaggcc tgcagcaaag ccggagtccg ttgtgtctgt
     2641 gtgctcagcg gaggaatcag cgccgaggag ctgatcgaag ccggtgcggt cgcggtgtat
     2701 gaggactgcc agacgctgtt gcgcgagctg gacgccagcc ttctggccag cgtctggtcc
     2761 tgacgttcag gccttcgccg gtgaggacac cttctgctgg cgctgcggct gtcgctcacc
     2821 ctcgcgagcc gtagtgacgc tgcgctgcag cgcctcgagc aggtccgaca tctcagtagg
     2881 ctcgggaggc tcggccgcgg tgacgatctc gcggccacgg tacttgtcgt cgatcagccg
     2941 ctctacccgt tcggtatagg tgtcgcggta gtcctccgga tgccaggacc cgctcatcga
     3001 cttgatcaac gcttcggcca tatccagctc cttgccccgg gccggtttat cgtgcggcag
     3061 ggtgtccagt tgctcggctg ggttgcggat ctcggcggcg aagaacaggg tttccaaggc
     3121 gagcacgcca tcgtcggcac ggatcgcggt gaggtactcc ttgccgcgca tgacgaaggt
     3181 ggcgataccg gcgcggttgg tccgcgccat ggcctcaacc agcagcgcat agggcctggc
     3241 gtattgctca tcttgggggg ccagccagta agtcttctgg aaatagacag gatcgatctc
     3301 atccaggtcg acgaagctgg tgatgtcgat agtccgcgag cggccggggg caatggcgtc
     3361 cagctcctcc ggctcgacga tcacgtagtc gccgccgccc acgtctcttc ccttgacgat
     3421 gtcggcgtac tcgacctccc tgccggtccg ctcgttgacc cgctggtagc ggatgcggtc
     3481 ggcggtgccg cgctgtaact ggtgaaagtg catggtgtga tcctcggtcg cgctgtagag
     3541 cctcaccggg atcgacacca gaccgaaatt gatcgacccg ctccagatag ctcgtgccat
     3601 caccattcat ctccttgtcg aattcctgag aaggagtacc ccctcgagct ccacctctca
     3661 ccggttctgg tgctgggcga gccgccgctc cagatcgtgc acccgccgct gcgcctccct
     3721 cgctctgcga tctgcggcct cgaaatcgtg ctgagccgac tgggcgcagc ggcgcgcctc
     3781 atgctcagct cgctcggccg cctcaaggcg gacccgcagc tcctggagcg cagtgaccgc
     3841 gttctgtgcc gcctgatcag cgtcggtcag cgcgcgctgc gcgtcgtcgc ggatggcggc
     3901 agcatcggtc gcctcgctgc ggaattgttc cagatcctgg cgaagttgct cgcgcccacg
     3961 agcactgccg tccggaaggc gttcattcct gtcgagcgcg cccgctccgg cgaacagttc
     4021 ggctgtaccc tcggccgggt caagggccga ggtgagccgc ccaccggcca gggcctgtgc
     4081 cgcagcggaa ctg
//
LOCUS       DASVXZ010000290         3965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_300378, whole genome shotgun sequence.
ACCESSION   DASVXZ010000290 DASVXZ010000000
VERSION     DASVXZ010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300378"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..406)
                     /locus_tag="VF788_05880"
     CDS             complement(92..406)
                     /locus_tag="VF788_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015785886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933709.1"
                     /translation="MDSRRVTQESDKRTVPGTGGPGPDEASVEGQRALRLHAGIAAIA
                     VALSAFVTWIFVVRLGSVPLAIGFAVVAVTSLVILGWALYRKRRGEQEASVALTDDGR
                     IR"
     gene            complement(963..3014)
                     /locus_tag="VF788_05885"
     CDS             complement(963..3014)
                     /locus_tag="VF788_05885"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEX8933710.1"
                     /translation="MSEQRSVHGLRAAAIRWCWPLVGGATLAGGLVIVVSALAGARPY
                     TAVGNPDPGPIVTVGTPLLRLLAELAATVCLGALAFTALCTRPQPSGLVSPQAYDELR
                     IATRAALIWGISALLLVPFSAADTVGLGLSRVITPEHLLAQLDALEQPKAWLITAAAA
                     AIVTVGCRTVLFWQTVFALTGLAILALVPPLVTAHGSSDSGHDFTLAAIIIHVPVAAL
                     WIGTALAILRQARRGGPTVAQLMTRYARLARWCWVVLVTSGLVLGVVLVPRETLLTSA
                     YGVLLLIKAGMVVVLVVAGEILRRRALRDLDAAPLGWPGLSRFGAADVLLLLGVLGMS
                     VELTHLSVPNVLSRAFTTTQTLLGYDLSGPPTPWRLITDWRIDMLFGPAAVLLAVAYL
                     VGVRHMRRCGQRWPVARTAAWLAGCLTLLLATSSGLSRYAAAMFSLHMASHMLISMLI
                     PALLVLGAPLTLLGTVTPEANSGPLPSLGDWLEILRASRLTRALMHPMVTLVLFTGSP
                     FALYFSGLFDTAVRFHWAHLAINAYFLLIGYFFFWAVIGVDGVPGSLPNLARLGILLA
                     AMPADIVFATALINTHRVIGNGIAAANMYQALKLPWVPNLLADQRLAGMLALAIGELT
                     LFVVMGALLLRWNQLDDMFDESGLSDHQVTLADLQTRAAASPPLPGTIDQHGQSPDRT
                     A"
     gene            complement(3121..3606)
                     /locus_tag="VF788_05890"
     CDS             complement(3121..3606)
                     /locus_tag="VF788_05890"
                     /inference="COORDINATES: protein motif:HMM:TIGR00026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HEX8933711.1"
                     /translation="MGLIDRRLTGWRRTLVRAPILLYRAGLGRLLGHRFVYLVHQGRR
                     SGLRREAVLEVVHYDPCTPEVFVIAAWGQRSNWYRNIAAAPAIEIRIGNQRWLRPRHR
                     FLTAEETVPLLNQYRHHHPLAWKIVAPMLGLPTDPTEPTWQARVATIRPVAFTPRRDS
                     P"
     gene            complement(3609..3797)
                     /locus_tag="VF788_05895"
     CDS             complement(3609..3797)
                     /locus_tag="VF788_05895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX8933712.1"
                     /translation="MTAPGVAELPPLVTRDSTLSDALSALTSMLGTGLPVLVPGNQLI
                     GWITHQAILNFLNLTTSP"
BASE COUNT          765 a         1258 c         1302 g          640 t
ORIGIN      
        1 ctgtcgtcat gggtgatgcc gggtgacgtg ggtcggtacg agttccaaag ttcggcgcag
       61 cgcctagtct ccaaccgctg cttccgtcag ctcaccggat gcgcccgtcg tcggtcaatg
      121 caacagacgc ctcctgctca ccgcggcgct tgcggtacag cgcccaccca aggatcacca
      181 gcgatgtcac cgcgacgaca gcgaacccta tggccaacgg gaccgaccca agcctgacca
      241 cgaatatcca tgtgacgaac gcactgaggg ccactgcgat ggctgcaatc ccggcatgta
      301 gtcgaagtgc tctctgcccc tcgaccgacg cctcatcggg acccggacca ccggtgcccg
      361 ggacagtgcg cttatcactc tcctgcgtaa cacgcctgct atccatgcct tctgggtacc
      421 cggcgagcgc ctgctcaacg cgcccgtttg ggccggacga cgtgcaactt cgcgatgccg
      481 gaagtgctcg tgcggttagg cggatcgggc ccttatcagc gcgctcgccc gactactccc
      541 cgagaccggg caaccgccag actagccaag gtcagtccag cgaagccccg cgagctgtac
      601 ccgcgagccc ggcctccacg attgtgctgt ccgggccggc gtcctcccgc acgatcgtca
      661 ggccgccagt ggcttcgtag ggcacatacc ggctccgatc gcgacggcga caacgaagtc
      721 aatgatcgat tattgtccca gcgtgcgcct tttccctagg cgcaagcagg tcaacgcggt
      781 ggaatacatt gatgcgtcct tgccagccat gattccgagt tgcggccagt caccgatgat
      841 ccacgatatg tgagctcctc acatccgatc gcgcaactag agccgtcatc cataccggaa
      901 ctgtgataag cccgcctggc ggtgaccctg tcttggtttc aaccttccgg gctgggttcg
      961 cattaagcgg ttcgatccgg cgactgcccg tgctgatcaa tcgtgccggg cagagggggt
     1021 gaggccgccg cgcgcgtctg tagatctgcc aaggtgacct ggtggtcgct cagaccggat
     1081 tcatcgaaca tgtcgtcaag ctggttccag cgcagcagca gcgcccccat taccacgaat
     1141 aaagtgagct cgccaatggc tagcgcaagc attccggcaa gccgttggtc agctaacagg
     1201 ttgggcaccc agggcagctt cagcgcctgg tacatgtttg ctgcggcaat gccgttaccg
     1261 atcactcggt gggtgttgat gagtgccgtg gcaaagacga tgtccgcggg catcgcggcc
     1321 aacaggatgc ccaaccgagc gaggttgggc agcgatccag gcacgccatc cacgccgatc
     1381 accgcccaga agaagaaata accgataagc aggaagtagg cgttgatggc caggtgtgcc
     1441 cagtgaaacc gcacggcagt gtcgaaaagg ccgctgaaat agagcgcgaa gggagatccc
     1501 gtgaatagca ccagagttac catcggatgc atcagtgccc gcgtcaaccg tgacgcgcgc
     1561 aggatttcta accagtcccc caggctgggt agaggccctg aattagcctc tggggtcact
     1621 gttcccagca gggtcagcgg agctcccagc acgagcaagg ccggaatcag catggagatc
     1681 agcatgtggc tggccatgtg caggctgaac atcgcggcgg cataccggct gagacccgaa
     1741 gaggtcgcca gcagtagcgt caggcaccct gccagccatg cggccgtcct ggcaaccggc
     1801 cagcgctggc cacaccggcg catgtggcga acgcctacga ggtatgcgac tgcaagcagc
     1861 accgccgctg gaccgaacag catgtcgatc cgccagtcag tgatcagtcg ccacggtgtc
     1921 ggcggtccgg agaggtcata gccaagcagg gtttgggtcg tggtgaaggc acggctgagc
     1981 acattgggca cggacaggtg tgtcagttcg accgacatac ccaacacgcc cagcagaagc
     2041 aggacgtcgg cagcaccaaa ccggctcaat cctggccaac caagcggtgc ggcatcgagg
     2101 tcgcgcagag cgcgccgacg caaaatctcc ccggcgacga ccagcacgac caccatgccc
     2161 gccttgatca gcaacagcac accgtatgcg ctggtgagca gcgtctcccg ggggacgagc
     2221 accacgccaa ggactaaccc agaggtgacc aacacgaccc agcaccaccg ggctaaccgc
     2281 gcatatcgcg tcatcaactg cgcgaccgtg ggcccgccgc gacgtgcctg gcgcaggatg
     2341 gcgagtgctg tcccaatcca taatgcggcg acggggacgt ggatgatgat ggcggccaag
     2401 gtgaaatcgt gtccgctgtc ggaggagccg tgcgcggtca ccaatggcgg caccagggcc
     2461 aggatcgcca acccggtgag ggcgaacacc gtctgccaga acagcacggt tcggcagccg
     2521 accgtgacaa tcgctgcggc cgccgcggtg atcagccatg ctttcggttg ttccagcgca
     2581 tccagttgag caaggaggtg ttcgggcgtg atgacccggg acagcccgag ccctacggtg
     2641 tctgcggcgg agaaaggaac gagcagcagc gcgctgatcc cccagatcag tgctgcgcgg
     2701 gtagcgatgc gcagctcgtc gtaggcctgc ggtgagacca gccctgaggg ctgcgggcgc
     2761 gtgcacaacg cggtgaaggc caacgccccg agacacacgg tcgcggccag ctcggccagc
     2821 agccgcagca gcggggtgcc caccgtcacg atgggacccg gatccggatt tccgaccgcc
     2881 gtgtacggcc gcgcgccggc cagcgcgctg accacgatga ccaggccgcc ggccagcgtc
     2941 gcaccaccga ccagcggcca gcaccacctt attgcggcag ccctgagccc gtggacggaa
     3001 cgttgttcgc tcacgaccgc agcctcgcgt gcagccaccc cgccagtagg gatgaatgtg
     3061 tcctcgaggt catggttcca tggttcgctt ctccaatccg gtggcggtgc gccgccgggg
     3121 ctagggactg tcccggcgtg gggtgaaggc gactggccgg attgtggcta cacgcgcctg
     3181 ccaggtcggc tcagtgggat cggtgggaag gcccagcatc ggtgccacga tcttccaggc
     3241 gagggggtgg tggtggcggt actggttcaa cagtggcacc gtctcctcgg ccgtgagaaa
     3301 ccgatggcgg ggacgcagcc accgctggtt tccgatgcgg atctcgatcg cgggtgcggc
     3361 ggcgatgttg cgataccagt tgctgcgttg tccccaggct gcgatgacga acacttcggg
     3421 ggtgcaggga tcatagtgca cgacttccaa aacggcctcg cgtcgcagac cactgcgtcg
     3481 tccctggtgg acgaggtaaa caaaccggtg cccgagcagt cttccgagcc cggcgcggta
     3541 gagcaggatc ggtgcgcgga ccagcgttcg tcgccagcca gtgagtcgtc ggtcgatgag
     3601 ccccatgatc atggcgatgt ggtcaggttg aggaaattga ggatggcctg gtgggtgatc
     3661 cagccgatga gttggttgcc ggggacgaga acgggcaagc cggtgcctag catgctggtg
     3721 agcgcgctca gcgcgtcgga gagggtggag tcacgggtca ccaggggcgg cagttcggcg
     3781 acgccgggtg cggtcacaca gctgtggtga gcaatgtttg cgtaaacgca accagcgcgg
     3841 ggacactgcc gggatgaatg ccatcccgcc tgaggcggat gccactcggc cctccgccga
     3901 gcagatcgac gccgtgatgc tcgccgctcg ggtactcgtc gcggtgtcgg cacagtcagt
     3961 ggcga
//
LOCUS       DASVXZ010000291         5751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1270758, whole genome shotgun sequence.
ACCESSION   DASVXZ010000291 DASVXZ010000000
VERSION     DASVXZ010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5751
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1270758"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VF788_05900"
     CDS             <1..693
                     /locus_tag="VF788_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEX8933713.1"
                     /translation="LVQLAAAPSSLATTIRLMAGHELVTEGFQPGQVGSSAMPHKMNT
                     RSCERVNGLAVVLRGYASMVAELAGSQWNEGDVSDSVVRRVALPDAFFAFDGLAETFL
                     TVLDEFGAYPAVIDREVERYLPFLATTKILVAAVRAGMGRESAHAVIREHAVAVAVAM
                     REKGADNDLLDRLADDSRLPLHRADLDALLADRLPFTGAAAEQVAAVLAQVQTVVARH
                     PEAATYRPASIL"
     gene            complement(724..1398)
                     /locus_tag="VF788_05905"
     CDS             complement(724..1398)
                     /locus_tag="VF788_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933714.1"
                     /translation="MTGVLDAVRKRRVAVIAVGAVLAVGLGTSAAIWGPELFASSLPG
                     KATNTANSASTGNTTDKAAGTPAKALPAGFSQFRSDHAGFEMGYPSNWTKLNPKDPQV
                     LLLLAQGTQDSLLVRESELPEPVGPQQLPSARQVTDKLVTSNKSVQMITEPKQIELGG
                     LPGFFYFYSFKDATSGQEGAHSHFFLFNGKTMISMVFQTLPRERFASTAPTFDKVAGS
                     FHALKK"
     gene            1753..2217
                     /locus_tag="VF788_05910"
     CDS             1753..2217
                     /locus_tag="VF788_05910"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HEX8933715.1"
                     /translation="MVTPEQKFGIQLQSRGAPRTFEQNFSMVLGSIYIVGGIIGFFVS
                     GFDNITEMTNHELFGVFLINPYHNIVHIGIGAFWLLGAFALTPAGNEGLNIAIGGIYA
                     LATVIGFLGYLSLLSIPAGPVGDNWLHLVTALVTLVLGTGLISAGRRQPSTA"
     gene            2377..3639
                     /locus_tag="VF788_05915"
     CDS             2377..3639
                     /locus_tag="VF788_05915"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX8933716.1"
                     /translation="MALVVQKYGGSSVNSAERIKKVAERIVETRNGGNEVVVVVSAMG
                     DTSDELLDLAAQVAAQPHQRELDMLLTAGERISNALVAMAIHDLGVDARSFTGSQAGV
                     ITTAAHGRARIIDVTPSRVRRALDQDAVALVAGFQGVSQDTKDVTTLGRGGSDVTAVA
                     LAAALRADVCEIYTDVDGVYSADPRIVPDARKLDTITYEEMLEMAACGARVLMLRCVE
                     YARRNGVAVHVRSSYSRNRGTMVAGSVEDRTMEQAMLTGVAHDRSESKITVIGVPDEL
                     GKAAHIFRVIADVEINIDMVLQNISHSDNRTDVTFTLPKLDAPVAVRALRMMQAEIGF
                     QDVLCDNRVGKVSLIGAGMRSHPGVTARFCEALAQAGVNIETINTSEIRISVLVRAEQ
                     LDEAVRAIHEAFDLGGDEQAVVYAGTGR"
     gene            3639..4733
                     /locus_tag="VF788_05920"
     CDS             3639..4733
                     /locus_tag="VF788_05920"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEX8933717.1"
                     /translation="MRPGAGAPQDIVLAIVGATGAVGTVMLDIIDSRPSVPWGEIRLV
                     ASARSAGKQLTVRGVQHVVIPLTPEAFDGVDIAMFDVPDEVSQLWAPIAVQRGAVVVD
                     NSGAFRMDPDVPLVVPEINAARAAVRPKGIISNPNCTTLSMMTAVGALHREFGLTELV
                     VASYQAASGAGRGGVDRLYAEIAAVAGKDVGVRGGDVAEALAAAGLPAQSPFPAPLAM
                     NVVPWAGSLKDDGWTSEELKVRNESRKILGIPGLKVSATCVRVPVVTTHALAVHAVFA
                     RPVTVEAAWRVFAAAPTIVLADDPAAGIWPAPAAVVGADPTYVGRIRQALDFANTLDF
                     FVCGDNLRKGAALNTYEIAETLAGDRFSER"
     gene            4828..>5751
                     /locus_tag="VF788_05925"
     CDS             4828..>5751
                     /locus_tag="VF788_05925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933718.1"
                     /translation="MSILSRRVARAFRLAALTAALTVLLALINPVPAAAHIVGTGGSP
                     TNYRATVTAIRPALPAVAATVGLGGQFVRITNQGAATIVILGYRGEPFLRLSPHLVEV
                     NQLSGTAAQTGLIPVAPPPESSASEPRWVRSSDADSVAWTDARIAPPPQSQPASESWT
                     LPLIVDGQQVSVVGTRDRTPPPSPWPWVAVLVLLTAAVAAIGWMRNWQRPMAAVVAAG
                     ILAFVLHVLGTGFAPQQNGPVFGWVSVGLVAGFALLVGAVCALSALRGSESAPDRAVT
                     AGGIVLILAAADISVLWDSQLPFPGPGVLDRG"
BASE COUNT          950 a         1802 c         1950 g         1049 t
ORIGIN      
        1 ctggtgcagc tagctgcggc gccgtcgtcg ctagcgacca cgatccgact gatggccggc
       61 cacgaactgg tcaccgaggg gttccagccc gggcaggtcg ggtccagcgc catgccgcac
      121 aagatgaaca cccgctcctg cgagcgcgtc aacggtctgg ctgtggtgct gcgcggctac
      181 gcctcgatgg tcgccgagtt ggccggctcg cagtggaacg agggcgatgt gtcggactcg
      241 gtggtgcgcc gggtcgcctt gccggacgca ttcttcgcct tcgacgggtt ggccgagaca
      301 ttcctcacgg ttcttgacga gttcggcgcc taccccgcag tgatcgaccg cgaggtggag
      361 cggtacctgc cgttcctggc gaccacgaag atcctcgtcg ccgccgtgcg cgccggcatg
      421 ggacgggaga gcgcgcacgc ggtgatccgg gagcacgcgg ttgcggtcgc tgtggcgatg
      481 cgagagaaag gtgccgacaa cgacctgctc gaccggctgg ccgacgacag caggttaccg
      541 ctgcaccgcg ccgatctgga cgccctgctc gccgaccggc tcccgttcac cggggcggcc
      601 gccgagcagg tggccgcagt cctcgcccag gtccagacgg tggtggcccg gcacccggaa
      661 gctgccacct accgccccgc ctcgatcttg tagatcaatc cgaccctggg tgcaggggga
      721 gcgtcacttc ttcagcgcgt ggaacgagcc cgcgaccttg tcgaaggtcg gtgcggtgga
      781 ggcgaaacgt tccctgggta gggtctggaa gaccatgctg atcatggtct tgccgttgaa
      841 caggaagaag tgcgagtgcg cgccctcctg gccgctggtg gcgtccttga aggaataaaa
      901 gtagaagaaa ccgggcaatc cgccgagttc gatctgcttc ggttcagtga tcatctgaac
      961 ggacttgtta gatgtcacga gcttgtccgt aacctgacgg gcactcggaa gctgttgagg
     1021 tcctaccggc tcgggaagtt cgctttcccg taccagcagg gaatcctggg ttccctgcgc
     1081 caggagcagg agaacctggg ggtcctttgg gttcagcttg gtccagttgg aggggtaccc
     1141 catctcgaag cccgcgtgat cactccggaa ctggctgaag ccagctggca aggccttcgc
     1201 gggggtaccc gctgccttgt ccgtagtgtt cccggtactt gcagaattag cggtatttgt
     1261 cgcttttccg ggaaggctcg aagcgaagag ctcaggcccc cagatagctg cggatgttcc
     1321 gagtccgacc gccagcaccg ccccgacggc gatgactgcc acgcgtcgct tgcgtaccgc
     1381 atccaacacg cctgtcatgg tgcccacttc catccatcag agcgtaagct ttcgcttact
     1441 gtgcgtgaac aatggatcgc cgttcagcat gccatttcct gggtcccccg tcacggaggg
     1501 cagcatcgta ctagcggcgt gtcaccatcg atcgcgcacc cctgggggtg tcgtgatatt
     1561 tagcctgcgc agcgcggacg ctgtcccaac gatctaattg atcttcgaca tccattaggg
     1621 tggtccgtcg gtcaggggat gaaccgtggg ctgccgtacg ccgaagtccg tactagggcc
     1681 aggcggtggc gccgcgacgc aaggtttacg cgcctcgcag ctgagccgtc ggagtcgtgg
     1741 aaagggacag gcatggtaac tccagagcag aagttcggga ttcagcttca gagcagggga
     1801 gcgcccagga cgttcgagca gaacttctcg atggtcctcg ggtccattta cattgtgggc
     1861 gggatcatcg ggttcttcgt ctcgggcttc gacaacatta ccgagatgac gaaccacgaa
     1921 ctttttgggg tcttcctcat aaatccgtat cacaacatcg tgcacatcgg gatcggcgcg
     1981 ttctggctgc tcggggcgtt tgcgctcact cccgccggca acgaggggct gaacatcgcc
     2041 atcggtggca tctatgcgtt ggccacggtg atcggattcc tcggttacct ttctttgctg
     2101 tccatcccgg ctggcccagt cggagacaac tggctgcatc tggtgaccgc gctggtcaca
     2161 ctggtactcg gtaccggcct gatcagtgcg ggccggcgtc aaccttctac cgcctaggcg
     2221 gagcgaaatc cttgtgtgcc gtgtcccctg atcatcaggg gacacggcac acacttgtgt
     2281 ctccgtgcag atcccgatag ggagacatat cgaggcgaag aggagccggc actagctccg
     2341 acatgtctcc aagccgtgtc ggagcgggag gtgggagtgg cgctcgtcgt ccagaagtac
     2401 ggtggctcgt cggtgaacag cgccgagcgg atcaagaagg ttgccgaacg gatcgtcgag
     2461 acgcgcaacg gtggtaacga ggtcgtcgtg gtggtgtcgg cgatgggcga tacctccgat
     2521 gaactgctcg atctggccgc tcaagtggct gcccagccgc accagcgtga gctggacatg
     2581 ctgcttaccg cgggcgagcg gatttccaat gcgctggtcg cgatggcgat tcatgatcta
     2641 ggcgtagacg cgcgctcatt caccggttca caagccggag tgatcacgac cgccgcgcac
     2701 ggccgggccc ggattatcga cgtgacgccg agccgcgtgc gtcgggcctt ggatcaggac
     2761 gcggtggcgc tggtagccgg atttcaggga gtgtcccaag acaccaagga cgtcaccaca
     2821 ttgggacgcg gcggctccga tgtcaccgcg gtcgcgctgg ccgctgccct gcgggcggac
     2881 gtctgcgaga tctacaccga tgtcgacggg gtgtattccg ccgacccgcg gatcgtgccc
     2941 gacgcccgca agttggacac gatcacctac gaggaaatgc tggaaatggc ggcgtgcggg
     3001 gctcgggtgc tcatgctgcg ttgtgtcgaa tatgcccgac gcaacggcgt tgcggttcac
     3061 gtccgctcgt cctacagccg caaccgcggc accatggtgg ctggatcagt ggaggatcgc
     3121 accatggaac aggccatgct caccggcgtc gcgcacgacc ggtccgaatc gaagatcacc
     3181 gtgattgggg tgcccgacga gctcggcaag gccgcccata tcttccgcgt gatcgccgat
     3241 gtagagatca acatcgacat ggtgctgcag aacatctcgc acagcgacaa ccgcaccgat
     3301 gtgaccttca cgttgcccaa gctcgacgca cctgtcgcgg tcagggctct gcggatgatg
     3361 caggcagaga tcggcttcca ggatgtgctg tgcgacaatc gggtcggaaa ggtgtcgctg
     3421 atcggtgcgg gtatgcgctc gcatccgggt gtcaccgcgc ggttctgtga ggccctcgcc
     3481 caggcgggtg tgaacatcga gaccatcaac acctcggaga tccggatctc ggttctggtc
     3541 cgcgccgagc agctggacga agcagtacgc gcgatccacg aggcgttcga cctgggcggc
     3601 gatgagcagg ccgtcgtcta tgcggggacc ggaaggtgat gcgcccgggt gcgggtgccc
     3661 cgcaggacat agtcctcgcc atcgtcggcg cgactggcgc cgtcgggacc gtcatgctcg
     3721 acatcatcga ctcacgaccg tcggtgccct ggggtgagat ccggttagtc gcctcggctc
     3781 gctcggccgg caagcagctc accgtgcggg gcgtccagca cgttgtcata ccgctcaccc
     3841 cggaggcgtt cgacggggtg gacatcgcga tgttcgatgt cccggacgag gtctcgcagc
     3901 tgtgggcccc gatcgccgtg cagcgtggcg cggtggtggt ggacaactcc ggggccttcc
     3961 ggatggatcc cgacgtgcca ttggtggtcc ccgaaatcaa cgccgcgcgt gcggccgtac
     4021 ggccgaaggg gatcatttcc aacccgaact gcacgacgct gtccatgatg accgcggtgg
     4081 gtgcgttgca cagggaattc ggcctcaccg agctggtggt ggccagctat caggccgctt
     4141 ccggtgccgg gcgtggtggg gtcgaccggc tgtacgccga gatcgccgcg gtggctggga
     4201 aggatgtcgg ggtgcggggc ggggatgtcg ccgaggcgct ggccgcggcc gggttgcccg
     4261 ctcagtcacc gttcccggcg ccactggcca tgaacgtggt gccctgggct gggtcgctca
     4321 aggacgacgg ctggacttcc gaggaactca aggtccgtaa cgagtcccgc aagatcctcg
     4381 gcatcccggg actgaaggtc tcggccacct gcgtgcgggt cccggtggtc accacccacg
     4441 cgcttgccgt acacgcggta ttcgcccgac cggtcaccgt cgaggcggct tggagggtct
     4501 tcgccgcggc accgaccatc gtgcttgccg acgacccggc tgccggaatc tggccggccc
     4561 cggcagcggt ggtgggcgca gacccaacct atgtcggccg gattcgacaa gccctggact
     4621 ttgcaaacac gctggatttc ttcgtctgcg gggacaacct gcgcaagggt gcggccctga
     4681 acacctacga gatcgctgaa accctcgccg gtgaccggtt ctcagagcga tagcaaatcc
     4741 cggttcatcc gaacgggact gctcagtgcg cgcatccgaa ccggccgggc acccggagcg
     4801 aaccaatcag ggggtgatgg cgtcgaggtg agcatactga gtagaagggt tgcgcgcgca
     4861 ttccggttgg ccgcgctgac ggcggcgttg accgttctgc tggcactgat caatccggtt
     4921 ccggcagcgg cgcacatcgt cggaacgggc ggatcgccca ccaactatcg ggccacggtc
     4981 accgcgatcc gtccggcgct accagccgtc gcggccaccg tcgggctcgg cggccaattc
     5041 gtgcgcatca ccaaccaggg cgcggcgacg atcgtgattc tcgggtaccg cggggaacca
     5101 ttcctgcggt tgtctcctca cctggtagag gtcaatcagc tcagcggcac ggcggctcag
     5161 accggcctga tcccggtcgc gcccccgccg gagagttcgg cgtccgagcc gcgatgggtg
     5221 cgcagcagcg acgcagacag cgtcgcgtgg accgacgccc ggatcgcacc accgccgcaa
     5281 tcacaaccgg catccgaatc ctggacgctg ccgctgatcg tggacgggca gcaggtcagc
     5341 gtcgtcggca cccgggatcg gacaccgccg ccttcccctt ggccctgggt agcggtcttg
     5401 gtcctcctca ccgcggcggt agcagccatc gggtggatgc gaaactggca gcggcccatg
     5461 gctgctgttg tcgcagcggg gatcctggcc ttcgtgctgc acgtactcgg taccggcttc
     5521 gccccgcagc aaaatgggcc ggtattcggt tgggtcagcg tcggcctggt ggccggattc
     5581 gccttgctgg tcggcgccgt ttgcgcgctc agcgcgttgc gcggaagcga atcggcgccc
     5641 gaccgggccg ttacggctgg gggaatagtg ctgatcctgg ctgcggcgga tatcagtgtg
     5701 ctgtgggact cccagctgcc cttcccgggc ccgggggtgc tggaccgcgg a
//
LOCUS       DASVXZ010000292         5588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1270795, whole genome shotgun sequence.
ACCESSION   DASVXZ010000292 DASVXZ010000000
VERSION     DASVXZ010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5588
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1270795"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..251)
                     /locus_tag="VF788_05930"
                     /pseudo
     CDS             complement(125..251)
                     /locus_tag="VF788_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558180.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(561..1748)
                     /locus_tag="VF788_05935"
     CDS             complement(561..1748)
                     /locus_tag="VF788_05935"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX8933719.1"
                     /translation="MKIVVIGGSGLIGAKLVTRLGEHGHEAVSASPSTGVNTLTGEGL
                     AEALTGASVVIDVSNSPSWEDAAVLRFFETSTHNLLAAEAAAGVGHHVALSVVGTDRL
                     AESGYFRAKIAQEKLIENSSIPYSIVRATQFFEFVKSIAAEATDGDTVRLPPVLVQPI
                     AADDVAKAIGRISVGSPVNGITEVAGPEQFQLDELIRQGLAVRNDPRTVLTDPHARYF
                     GIDGVGERTLIPGDGAVIGDIRFSDWLSQSGRGSAMIDTLPVAETRSTAWQTALTMLQ
                     EAKPPFIPAGADVMTVVIEFPPGDPGTPPHRHSGPAFGYMLEGEMLFELEGEPPRVIR
                     AGEAFWEPGGDIIHYQDGNNRADIRSCFVVTMMGVPGQPMLTLVCDEELALRKDRRAP
                     RSS"
     gene            complement(2555..2866)
                     /locus_tag="VF788_05940"
     CDS             complement(2555..2866)
                     /locus_tag="VF788_05940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933720.1"
                     /translation="MDGGARYRSSGFLAPPWVGSGDAYFSGNAALGTCSVPAEKVLYR
                     QRGPALAGFDPVLVEVQHGLDALHAGAADAGKQVAAQTPDVAAGAWGRILFWKSAKWR
                     V"
     gene            complement(3002..3430)
                     /locus_tag="VF788_05945"
     CDS             complement(3002..3430)
                     /locus_tag="VF788_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEX8933721.1"
                     /translation="MIVAIEPLAHANRSAAQNISGTAGKRSMPMDAYRDGDQLIVQLE
                     LPGIERDSIELNVENNVLTVKAHRPRLEIEDSQWLVSERLHGTFSCQLHLGNQLDLDE
                     IRASYDQGVLTITVPVAKESEARRIEIGGSQSSGAESAAP"
     gene            complement(3693..4622)
                     /locus_tag="VF788_05950"
     CDS             complement(3693..4622)
                     /locus_tag="VF788_05950"
                     /inference="COORDINATES: protein motif:HMM:NF016013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF389 domain-containing protein"
                     /protein_id="HEX8933722.1"
                     /translation="MHHTIEIAVPTETTETLLTELEALEGVLALSVVRGASVKPAGDV
                     VTVHALNREVDAVLAVAEKVQRFGPMSVSTGELQSLIEPQATRAIDDDIDESPWEEFE
                     RGLRHHGRLNHNYLVLMVLGATIAVAGLFSSPVPQALALAAAGIIAPAFEPVAKLTLG
                     LVRGSWYAISRAFIAVAGGYVVMALVGALAYLLFHRLGVGGPESWAESEGVKTVIHPT
                     AADWFISAGGATAGLVIITAYRRAVLAGALIALALVPAAALIGVGVAAGEVDMALQAL
                     RRVGLDMLMVIVLGGAVVVLKQRIIHRNRRPLT"
     gene            complement(4999..>5588)
                     /locus_tag="VF788_05955"
     CDS             complement(4999..>5588)
                     /locus_tag="VF788_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933723.1"
                     /translation="AYTADKPALAESSDELRARIPGWGVDLDPKDRPSVPRERFDPNL
                     SGAHWDFPEKQPEKWPRERSIEHKFLTPVFGTSCPPKGVSGIMRKYAYRRFSEGRAAH
                     WLILMAADRVDSLGSHLQSLLTLRPDNPITETGVLSEFTRHGIASRMGKKRADLTHQP
                     LDVIIIAAPWVVAVGAVYQALKRLRKIVMRQAATA"
BASE COUNT          962 a         1802 c         1786 g         1038 t
ORIGIN      
        1 actccttcgg cacagaagac ggctcgacaa agcataagaa cccggcttgc atccaccgag
       61 tatggcagcc agccaccgcc tggatcggca ctagggcctg tcctgtggac cacggaacgg
      121 agtcgcggag ccagatgcgg atcgaggcaa cgtcgatcgt cggcgaagat gtcgacgcgt
      181 ttgtcgtagc gagtggctac agtgcggaat tgtttgagcg tgttgatggc gcgttcgacg
      241 gtgttgcgct gggtgcagtc ggtggcgtcg aagccgcaag taatgttcgt tagccgttgg
      301 cggtttcaga cggaggttgc tggtgtcggt cggtgtgtcg agtcccttgt gcaggtgggt
      361 gggggcggcg aggatcagcg attgtgttga tgccgcagga ggaggtctgt ggtggctgat
      421 gatgcgcggc ggggtcatgg tgttgacggc gatgaccccg gttgtgacgg ccgacacccg
      481 gcgtggcgtc tcgccaggat cagcccgggg ttgctctggc gggtggctgt tctcctccgt
      541 cgacggcatg ggcctaccgg tcaggacgac cgtggtgcgc gccggtcttt gcgcagggca
      601 agctcttcgt cgcagacgag ggtgagcatc ggctggccgg gaacgcccat catcgtgacg
      661 acgaagcagc tccggatgtc cgcccggttg ttgccgtcct ggtagtggat gatgtcgcca
      721 cccggctccc agaacgcttc tccggcccga atcacccggg gcggctcacc ctccaactca
      781 aagagcatct cgccctccag catgtagccg aaggcgggtc cggagtgccg gtgcggtggc
      841 gtgcctgggt caccgggcgg gaactcgatg accacagtca tcacatctgc tccggccgga
      901 atgaagggtg gcttcgcttc ctgcagcatc gtgagtgctg tctgccaggc ggtggatctg
      961 gtctccgcca ccggcagggt gtcgatcatg gcactacccc tgccggactg gctgagccag
     1021 tcgctgaagc ggatgtcgcc gatgacggcg ccatcgcctg ggatcagggt gcgctcgcct
     1081 acgccgtcga tgccgaagta ccgggcgtgc ggatcggtga gcaccgtccg cgggtcgttg
     1141 cgcacggcaa ggccctgccg gatgagctcg tcgagctgaa actgctcggg gccggcgacc
     1201 tcggtgatgc cgtttactgg tgagcccacg gagattcggc caattgcctt ggcgacgtcg
     1261 tcggccgcga tcggctggac cagcaccggc ggcaaccgga ctgtatcgcc gtcggtggct
     1321 tcagcggcga tgctcttgac gaattcgaag aactgcgtcg cgcgcacgat cgagtaaggg
     1381 atcgacgagt tctcgatcag cttctcctgg gcgatcttcg cgcggaagta gccgctctcg
     1441 gccaaccggt cggtgccgac caccgacagc gcgacgtgat gccccacgcc ggcggcggcc
     1501 tccgcggcga gcaggttgtg ggtggaggtt tcgaagaacc tcaagacggc tgcatcctcc
     1561 caggaaggcg agttcgacac gtcgatcacc accgacgcgc cggtaagagc ttcggcgagg
     1621 ccttcgccag tgagggtgtt gacgcccgtg ctgggtgagg ccgacaccgc ctcgtggccg
     1681 tgctcaccga gcctcgtgac gagcttcgcg ccgatgagcc cacttccacc aatgacaacg
     1741 atcttcatcg agggatcctt cctgtccgcc ggcggcaccc gtccgtccgg tcgtagagct
     1801 aagacagggc agccccgcgc tgtgacagat ccaccgaaac agcgacgcca caacgcaggc
     1861 agctgtctgg tccttcttca tagaagcact cccggcagac aaggaacccg ctcgtgagca
     1921 agcacatctt cgagctgatc tccctgtggg tcgcaccgtt cgcccacggc cacggtgccg
     1981 gtgactccgc cgttcgtcgg gtcccggcat gggcaccaat cgagcacggc cgaaagccag
     2041 ttgtcctgtc cgtgaaaatc aacaccaatc cagctgtacc ggcgccacga attcactggc
     2101 gtcgaccctt caccggatgc atacaacgtc cccttctgcc gctgaccgcg cgtcgtccgc
     2161 gcggctacga cccgccgtca cagcacattc gagtaactaa cgttgctatt cctgctgtcc
     2221 gtgcctgctg cgtgggtacg cgttgtcctg ctcgctgtga ctgtgatgcg ggttgcgctg
     2281 accgggtggt cttttggtat tgacccgctg ctgggcatcc gtgcgcagtt gcgctgctcg
     2341 tgatccgtcg agaggtcgcc gcggtcggcg gcaggaagac cagagcgacg cagataggac
     2401 tatctagcac cgctaccggc acccatggat ccggcgccgc tgccgggtga cgcgctgcca
     2461 cgggccgatg tggcgttatt acctggaccg tggacgagct ggccggacta gcacaggtac
     2521 tcaccccggt gtaagccctg cagcgttggc atcgctacac ccgccatttc gcggatttcc
     2581 aaaacaagat ccggccccat gcgccggcgg ccacgtccgg cgtctgggca gctacttgct
     2641 tacccgcgtc ggcagcacca gcgtgtagtg catcaagtcc gtgctgcact tcaacgagga
     2701 cgggatcaaa accggcgagg gcagggccac gctgccggta aaggactttt tcagcaggga
     2761 cactgcaggt tccgagcgcc gcgttaccgg agaaataggc atcccccgat ccaacccacg
     2821 gcggcgccag aaaacctgag ctacgatacc ttgcgccacc atccataggg gcagcccggt
     2881 gtcggcggcc gacgtctcgc accaactgcg ccggtgtgat cggctcggtc tcggtacatc
     2941 gatagcaaac tcggtgccga cttctggtgt cggctctgtg gacgaatcgt ggaacggtag
     3001 gtcagggcgc ggccgactcg gcgccactgc tctgggagcc gccaatctcg atccggcggg
     3061 cctcggattc cttggctacc ggaacagtga tggtcaacac gccctggtcg tagctggcgc
     3121 ggatctcgtc caggtcgagc tggttgccca gatggagctg gcacgaaaag gtgccgtgca
     3181 gccgttcgga caccaaccac tgtgagtctt cgatctctag ccggggccgg tgcgccttca
     3241 cggtcaagac gttgttctcc acgttcagct cgatcgagtc gcgctcgatg cccgggagct
     3301 caagctgcac gatcagctga tccccgtccc gataagcgtc catcggcatg ctccgcttcc
     3361 cagcggtgcc cgagatattc tgagcagcag agcgattggc gtgggccaag ggctcgattg
     3421 ccacgatcat ccgagttcac ctcactattc tcaatcgctg ccggcgcagc gctagctgcg
     3481 atggtgttcc ccgtttagcc ccggcctaac gcaaacggtc aggtcagctg gcataaatcc
     3541 ccggccgcgc tagcgtcggc aatggacctt gatgtgcgtc gtctgcgtcg tgcaccaccg
     3601 gagcccacca ccgactggac catcccggcc cctcccacca gccttcgaac aggcacgcgg
     3661 cggtgttcta caaaccccgt cctgcggtgc tactaggtca aggggcggcg gttgcggtgg
     3721 atgatgcgct gcttgagcac aaccaccgcg ccaccgagca ctatcaccat gagcatgtcc
     3781 agtcccaccc ggcgcagtgc ttgtagtgcc atgtcgacct cccccgcggc cacgcccaca
     3841 ccgattaggg ctgcggcggg aaccaacgcc aacgcgatga gggcaccagc gaggaccgca
     3901 cgccggtaag cggtgatgat caccaggccg gcagttgctc caccggccga gatgaaccaa
     3961 tccgcggcgg tcggatggat cactgtcttg actccctcgc tttcggccca cgactccggt
     4021 cctcccactc ctagccgatg gaatagcagg taagccagcg ctcccacgag cgccatcacc
     4081 acgtatccac cagccacggc gatgaacgcg cggctgatgg cgtaccagct accgcggacc
     4141 agtccaaggg tcagtttggc caccggctca aatgctggcg cgatgatgcc ggccgcggcc
     4201 agtgccaatg cctgcgggac agggctagaa aagagccccg ctaccgcgat ggtcgctccc
     4261 agcaccatca gcaccagata attgtggttc agccgaccgt ggtggcgaag gccccgctcg
     4321 aactcctccc agggcgactc gtcgatgtcg tcgtcgattg cccgcgtggc ctggggctcg
     4381 atgaggctct gaagctcacc ggtgctcacc gacatcggtc cgaatcgctg gaccttctct
     4441 gcaaccgcca gcaccgcgtc gacctctcga ttcagggcat gcactgtgac aacgtcgcct
     4501 gccggcttca ccgacgcccc acgcacaacg gagagggcta gcacaccttc cagcgcctca
     4561 agctcggtca gcagagtctc agtggtctcg gtcgggaccg cgatctcgat cgtgtgatgc
     4621 accgctgccc cccgctgcct cagacccagg ccacgacgaa ggcctgccct tcggtgccca
     4681 agggcatcca tacccgatac cgcgctgacc agacattatc gggagataga gctcaagaat
     4741 cactcgatcg cgtcgcgtaa gtagggcgca aaattgccac gtagttactc acgggctgcc
     4801 gtgctccgcg aactggccaa gccgccgcgc accaggctct tatgggcatc gtcaacttgt
     4861 ttcacttcga gctgccgatg tgcgtgtgga tctgattggg ggttcggttg gtctcccgtg
     4921 cactcactta agcagctgtc gccgtggtcg cgtcggtgcc tggttgcaag tggtgaagcg
     4981 gcgctggagg ttggttggtt atgcggtagc agcctgcctc ataacgatct tccgcagacg
     5041 tttgagcgcc tggtagaccg ccccaacggc gactacccaa ggagccgcga tgatgattac
     5101 gtcgagcggc tggtgggtga ggtcggcgcg cttcttgccc atccgcgagg cgattccgtg
     5161 gcgggtgaac tcgctgagta cgccggtctc ggtgatggga ttatccgggc gtagggttag
     5221 cagcgactgg agatggcttc ctagtgagtc cacccggtcg gccgccatca ggatcaacca
     5281 gtgcgctgca cgcccctcgc tgaacctcct gtatgcgtat ttgcgcataa tcccggacac
     5341 gcctttcggc gggcaggacg tgccaaagac tggggtgagg aacttgtgct cgatcgacct
     5401 ctcgcgcggc cacttctccg gctgcttctc ggggaagtcc cagtgcgcgc cgctcaggtt
     5461 ggggtcgaac cgctcccgcg gcaccgacgg gcggtccttc ggatccaggt cgacgcccca
     5521 accggggatg cgagcgcgga gctcgtcgct tgattccgca agtgcgggct tgtctgccgt
     5581 gtaggcca
//
LOCUS       DASVXZ010000293         4905 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1197136, whole genome shotgun sequence.
ACCESSION   DASVXZ010000293 DASVXZ010000000
VERSION     DASVXZ010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4905
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1197136"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>4905
                     /locus_tag="VF788_05960"
     CDS             <1..>4905
                     /locus_tag="VF788_05960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8933724.1"
                     /translation="AWYSETDGSDGTPPGDQPPPIGRPIANTQVYVLDGWLRLTPIGV
                     PGELYLSGRGLARGYLHQPGLTATRFVANPFGGPGSRMYRTGDVVRWNVQGQLEYLGR
                     SDLQVKIRGFRIELGEIEAAVARHEHVAEAVAMVRTDDAGRTRLVAYLVSRGQAELST
                     TALREFLARSLPDYMLPSVFVTMAALPLNANGKLDRRRLPDPDWPNAHAGYLAPRGSL
                     ERTLAQIWAEVLGVDQVGITDDFFALGGDSILSIQVVSRARAAGWNLTPRDVFRQPTV
                     AGLAACATVATPVLAEQGPVTGVVPLTPIQRWFFAEVRVAEHFDQSVTLELADDVDPI
                     ALAGALTMVVEHHDALRMRFEQREGRWLQYNAPVAPVRLLQRRDLRDARLPGVLNELS
                     AEVQHSFDLARGPLLSAVLFDWRGRRRPVLVLAVHHLVVDGVSWRILLEDLARAYAQA
                     RAGQRVVLGAKTTSFQQWAHALTEHAAAGGFDAELDHWRQLCQHTGRVLPVDGTGPNT
                     VGAMRSLRVTLDAERTSALLAQVPEVYRTQINDVLLTALVAVMGSWTGQQQVIIDLEG
                     HGREDLFAGMDLSRTVGWFTTLFPLALPVTQGQDWGVRLRAVKEYLRAVPGRGLGYGA
                     LRYLTNTPELSGQTPQISFNYLGQFVWSAAAEGSFGSVCGGLAADAAPDTIRGHLLDV
                     VGAIETGCLQLTWYYAPDTHRRSTVQALAEATLHALEEIVEHCAQPGAGGCSPSDFPL
                     ARLDQTTIDHIAGNGQGIEDIYPLTPMQAGMVFHGLVQEERGLYVEQITFVLDGVTDP
                     QQLGAAWQQVVDRTPALRSRISWDGSAGPLHVVRRDVSLPVSYADWRHLSQQELRDEL
                     RMSLDCDRAEGLELSAAPLMRVALARLSDTEVQVIWTFHHVLLDGWSVFQVLSDVFAC
                     HHAKAELPSRRPFRDYLHWLSEQDPADAEQYWRRMLAGFEGRTPLPYQQPPAQTHSTG
                     SSQWHGRQFSAEDTAALAAFAQRHGLTLNAVVQGAWALLLSRYSGERDVCFGATVSDR
                     PADLPGVEDITGMFLNTLPVRVEVTDDADALEWMRELQDAQTESRRFGFVPLPQIQAW
                     SELPSGDHLFDSIVVFENYPINDEEAAAHGLALRELQAIESTNYPLTVVVSPRRQLSV
                     EFGFDAGAFDAALIERISGHFLRVLTVLSAEPGVRCGDIDMLTERQRSQVLVEWNDTA
                     WDVPVATLAELVQAAVARTPDAPALVSDGGMISFAELDARANRLARLLIAHGAGPERI
                     VALALPRSVDIMIAQLAVSKAGAAFLPIDPAYPRERIGFMLTDACPILVLTLAQLAAG
                     LPLAADATVLVLDDPVTVAAVAAMPAQPPTDADRWAPLSVAHPAYVIYTSGSTGAPKG
                     VVVSSAGLANFAAAEAEHFTVGPGDRVLQFSSPSFDASVLELCMSLPAGAALVVPPPG
                     PLLGEALAEVLARHRVTHALIPPVALATVPVDLAATGLTEFSTVIVGGEACTAELVAR
                     WAPGRRMINAYGPTESTVVATWSQALVPGRTPSIGAPIPNTCAYVLDGALRPVPVGIP
                     GELYVAGAGLARGYLRRSGLTAARFVANPYGSPGSRMYRTGDRVRWTAQGELEFLGRA
                     DDQVKIRGFRVEPGEIEAALRRHP"
BASE COUNT          720 a         1587 c         1719 g          879 t
ORIGIN      
        1 agcgtggtac tccgagacgg acggatccga cgggacaccg cccggtgacc aaccgccgcc
       61 gatcgggcgg ccgatcgcca acacccaggt ctacgtgctg gatggctggt tgcgactgac
      121 gccgatcgga gtgccgggtg agctgtacct cagtggtcgt ggcctcgccc gaggttatct
      181 ccaccagccg ggactgaccg cgacgcggtt tgtggcgaat ccattcggtg gtccgggttc
      241 ccggatgtat cgcaccgggg acgtggtgcg ctggaatgtc caggggcagc tggagtatct
      301 gggccggtcg gatcttcagg tgaagatccg gggattccgc atcgagctcg gggagattga
      361 ggcagccgta gctcgccacg agcacgtggc cgaggccgtc gcgatggtgc ggaccgacga
      421 tgctgggcgc acgcgcctgg tcgcctatct ggtatcgcgg ggtcaggctg aactcagcac
      481 cacggccctg cgggagttcc tggcccgatc gttgcccgac tacatgctgc cctcggtgtt
      541 cgtgaccatg gcggcattac cgttgaatgc caacggcaaa ttggaccggc gcaggctgcc
      601 cgacccggac tggccgaacg cacacgctgg ttacctcgct ccccgaggct ccctggaacg
      661 gacattggcc cagatctggg ccgaggtact cggagtggat caggtcggga tcaccgatga
      721 cttcttcgcc ctcggtgggg actccattct gagcatccag gtcgtctccc gggcgcgggc
      781 ggccgggtgg aacctgacac cccgggacgt gttccggcag cccaccgtgg cggggttggc
      841 ggcctgcgcc actgtcgcga cgccggtcct ggcggagcag ggaccggtga ccggggtggt
      901 gccgttgact ccgatccagc gctggttctt cgccgaggtg cgggttgccg aacattttga
      961 tcagtcggtg accctcgagt tggctgatga tgtcgatccg attgcgctgg ctggtgcgtt
     1021 gacgatggtg gttgagcacc acgatgccct gcggatgcgg ttcgagcagc gggaagggcg
     1081 ctggttgcag tacaacgccc cggtggcgcc ggtgcggttg ctccagcggc gcgatctgcg
     1141 ggacgcgcgg ctgcctggtg tgctgaacga gctgagtgct gaggttcagc acagctttga
     1201 tctggctcgt ggtccgttgc tgtcagcggt gctgttcgac tggcgtggcc gccggcgccc
     1261 ggtgttggtg cttgcagtgc atcacctggt ggtagacggg gtgtcctggc ggatcctgct
     1321 ggaggatctg gcccgcgcct acgcccaggc ccgggccggg cagcgggtgg tgttgggcgc
     1381 caagacgacc tcgttccagc agtgggcgca tgcgctgacc gagcatgccg ccgccggggg
     1441 tttcgatgcc gagctggatc actggcgcca gctgtgccag cacaccgggc gggtgctgcc
     1501 ggtggacggt accggcccca acacggtggg ggcgatgcgc tcgctgcggg tcaccctgga
     1561 cgccgagcgc accagcgcgc ttctggctca ggtacccgag gtctaccgga cccagatcaa
     1621 cgacgtgctg ctgaccgcgc tggtcgcggt tatgggttcc tggaccggcc agcagcaggt
     1681 gattatcgat ctggagggtc acggccggga ggacctcttc gcggggatgg atttatcccg
     1741 cacggtgggc tggttcacca cgctgttccc cctagcgctg cccgtcaccc aggggcagga
     1801 ctggggcgtc cggctgcggg cggtcaagga gtacctgcgc gccgtccctg gccgcggcct
     1861 gggttacggc gcactgcgct acctcaccaa cacccctgag ctgagtggcc aaactcctca
     1921 gatcagtttc aactacctgg gtcaattcgt ctggtctgcc gcggcggaag gctccttcgg
     1981 cagcgtctgc ggtgggctgg ccgccgacgc cgctcctgac accatccggg ggcacttgct
     2041 cgatgtcgtc ggagccatcg aaaccgggtg tctgcaatta acctggtact acgcgccgga
     2101 cacgcacaga cgctccaccg tgcaggccct tgcggaggcc acgctgcatg cactggagga
     2161 gatcgttgag cactgcgccc aacccggcgc ggggggctgc agcccttcgg acttccccct
     2221 cgcgcgcctc gaccaaacca ccatcgatca catcgccggc aacggccagg gcatcgaaga
     2281 catctacccc cttactccca tgcaggccgg catggtcttc cacgggctcg tgcaggagga
     2341 acggggcctc tacgtcgagc agatcacctt tgtgctggac ggcgtcaccg atccccagca
     2401 gctcggtgct gcctggcagc aggtcgtgga ccggacaccg gcgttgcgga gccgcatcag
     2461 ctgggacggg tcagccggac cgctgcacgt ggtacgccgg gacgtcagcc tcccggtcag
     2521 ctacgccgac tggcggcacc tgtcccagca ggaattgcgc gacgagctgc gcatgtcgct
     2581 cgactgcgac cgcgccgagg gtttggagct gtctgcggcg ccgctgatgc gggtggcgct
     2641 ggcgagactg tccgacaccg aggtgcaggt gatctggacc ttccatcacg tgttgctgga
     2701 cgggtggagc gtcttccagg tgctctcgga tgtcttcgcc tgccaccacg ccaaagctga
     2761 gttgcccagc cggcgcccgt tccgcgacta ccttcactgg ctcagcgaac aggatccggc
     2821 ggacgccgag cagtactggc ggcgcatgct cgctggtttc gaaggccgca cgccgctgcc
     2881 ctaccagcag ccaccagccc aaacgcacag caccggctca tcgcaatggc acggcaggca
     2941 gttcagtgcg gaggacaccg ccgcgcttgc cgcgttcgcc caacgccacg gcctcacgct
     3001 caatgccgtt gtgcagggcg cgtgggcgtt gctgctgtcg cgctacagcg gcgagcgcga
     3061 tgtttgtttc ggagcgacgg tatccgaccg accggctgat ctgcccggag tggaagacat
     3121 caccggcatg ttcctcaaca ctttgccggt gcgcgtggag gtgaccgacg acgccgacgc
     3181 acttgagtgg atgcgggagc tgcaggacgc tcagacagag tcccggcggt tcggtttcgt
     3241 accgctgcct cagatccagg cctggagtga attacccagc ggcgatcacc tgttcgacag
     3301 catcgtggta ttcgagaact acccgatcaa tgacgaggaa gccgccgcgc acggccttgc
     3361 ccttcgcgaa cttcaggcca tcgaatccac gaactacccg ctcaccgtcg tcgtgtcccc
     3421 ccggcgccag ctgtccgtcg aattcggctt cgacgccggc gctttcgatg cggccctgat
     3481 cgaacggata tccggacatt tcctgcgggt attgacggtg ctgtcagccg agcctggcgt
     3541 gcgctgcggc gacatcgaca tgctgacgga gcggcagcga tcccaggtgt tggtggagtg
     3601 gaacgacacc gcctgggacg tgccggtagc cacgttggcc gagctggtgc aggcggcggt
     3661 ggcccgaaca ccagacgcac cggcccttgt gtccgacggc gggatgatca gcttcgcgga
     3721 gctggatgcc cgggcgaacc ggttggcgcg gttgttgatc gctcatgggg ccggcccgga
     3781 gcgcatcgtg gcgctggcat taccgcgatc ggtggacatc atgatcgcgc agctggcggt
     3841 gtcgaaggcc ggggcggcgt tcctgccgat cgatccggcg tacccgcgcg agcggatcgg
     3901 cttcatgctg accgatgcct gcccgatcct ggtcttgact ctggcgcagc tggcggctgg
     3961 gttgccgctg gccgccgacg ccacagtgct ggttctcgat gatccagtca cggtggccgc
     4021 ggtggcggcg atgcccgctc agccaccgac cgatgccgat cgctgggcac cgttatcagt
     4081 ggcgcatccg gcttacgtca tctacacctc agggtccacc ggagcgccga agggtgtggt
     4141 ggtctcctcc gctgggctgg cgaatttcgc cgccgccgaa gccgagcact tcacggtggg
     4201 tcccggtgat cgggtcctgc aattctcctc gcccagcttc gatgcctcgg tgttggagtt
     4261 gtgcatgtcg ttgcctgccg gtgcggcgtt agtggtgcca ccgcccggtc cgctgctcgg
     4321 cgaggcgctg gcggaggtgc tcgctcggca ccgggtcact cacgcgttga tcccgccggt
     4381 cgcgttggcc acggtgccgg tcgacctcgc agccaccggg ttaacggaat tctccacggt
     4441 gatcgtaggt ggggaggcct gcaccgcgga gttggtggcg cggtgggcac cgggccggcg
     4501 gatgatcaat gcttacggac cgacggaatc cacggtggtg gcgacctgga gccaggccct
     4561 ggtcccgggc aggacaccgt cgatcggcgc gccgatcccc aacacgtgcg cctatgtact
     4621 tgacggagcg ctacgcccgg tcccggtggg gatacccggt gagctttacg tcgccggcgc
     4681 cgggctggcg cggggatacc tgcgccgttc ggggctgacc gcggcgcggt tcgtcgccaa
     4741 cccgtacggt tccccgggct cccggatgta ccggaccggg gaccgggtgc gctggacggc
     4801 gcagggtgag ctggagttcc ttggccgcgc tgatgaccag gtcaagatcc ggggtttccg
     4861 cgttgagccc ggagagatcg aagccgcgct gcgcaggcac cccga
//
LOCUS       DASVXZ010000294         1847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_480027, whole genome shotgun sequence.
ACCESSION   DASVXZ010000294 DASVXZ010000000
VERSION     DASVXZ010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480027"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VF788_05965"
     CDS             <1..236
                     /locus_tag="VF788_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016701265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEX8933725.1"
                     /translation="LGGDVRETLDGLEIRPRPLRGDPVRPWATYADHRMATAGAILGL
                     VVPGIAVDDIAATSKTLPEFPASWSAMLAGGGL"
     gene            377..1243
                     /gene="rsgA"
                     /locus_tag="VF788_05970"
     CDS             377..1243
                     /gene="rsgA"
                     /locus_tag="VF788_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEX8933726.1"
                     /translation="MDRGRWTCAPDEDPEVRISAMRARELGRTPVVVGDRVGLVGDVS
                     GAPDALARIVRFDARTSVLRRTADDDDPYERIVVANAEQLLIVSSLADPPPSLGLIDR
                     CLVASYAGGLEPVLCLTKRDLAGPETVLERYAALELPVLVTSPELGVEAVRSRLAGRV
                     SALVGHSGVGKSTLVNRLVPDALRATAAVSGVGKGRHTSSSAVALPLPGGGWVVDTPG
                     IRSFGLAHVTPDDVVRAFGDLAQAIADCPRGCTHLGPPADPECALDELNGAPYRRAMS
                     VRVLLTALTESS"
     gene            1276..1731
                     /locus_tag="VF788_05975"
     CDS             1276..1731
                     /locus_tag="VF788_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933727.1"
                     /translation="MLVDQTVTYLEMTSADQLLPGKVPTGEITLDRVDRGELDLIRST
                     IGRIGTPHHWSSLAWPEQQWLDVLARPSVRSWIARVGIDVIGMVQMETHHRGDVEIWD
                     LGAVNRVWLHTSSFDHPHALPNYCNRGFRPFRLEHRPRELPTGPPQRCR"
BASE COUNT          268 a          609 c          670 g          300 t
ORIGIN      
        1 cgctgggcgg cgatgtccgg gaaaccctcg atggcctgga gatccgtccc cggccgttgc
       61 gcggggatcc cgtgcgtccc tgggccacct atgccgatca ccgaatggcc accgcaggcg
      121 cgatcctggg cctggtggtg ccgggaatcg ccgtcgatga cattgccgcg acgtccaaga
      181 cgctgccgga gttcccagcc agctggtcgg cgatgctcgc cggtggtggc ctctgagcag
      241 gccgaggagt gggcccggtg gggggcacgg tctcgacgaa tccgacgtcc ggatccggcc
      301 gggacgccga ggttcgcggc ctcgcaccaa gcgccgcccc gagcacgcag atgcgaccga
      361 cgcgatggtg gtggcggtgg accgcggccg atggacctgc gcacccgacg aggatccaga
      421 ggttcggatc agcgcgatgc gagcccgcga gcttgggcgc accccggtgg tggtcggtga
      481 tcgggtcggg ctggtcggcg acgtcagcgg cgcgccggat gcgctggcca ggatcgttcg
      541 gttcgacgcg cgcaccagcg tgcttcgccg tacggccgat gacgacgatc cctacgagcg
      601 gatcgtggtc gccaacgccg aacagctgct catcgtgtcc tcactcgccg acccaccgcc
      661 aagcctcggc ctgatcgacc gctgtctggt ggcgagctac gccggcggtc tggaaccggt
      721 gctctgcctg accaagcggg atctggctgg gccggagacc gtgctggagc gctacgcggc
      781 gctggagttg ccggtgctgg tcaccagccc ggagctcggt gtggaggcgg tgcggtcgcg
      841 gctggcgggt cgggtgtcgg cgctggtagg gcactccggg gtgggcaagt cgacgctggt
      901 gaaccggctg gtgccggacg ctctccgcgc cacagcggcg gtcagcgggg tgggcaaggg
      961 acggcacacc tcgtcctcag cggtggctct gccgctacca ggcggcggat gggtggtgga
     1021 taccccgggg atccgctcct tcgggttggc gcatgtgacg cccgacgatg tggtgcgcgc
     1081 cttcggtgac ctggcccagg cgatcgcgga ctgcccccgg ggctgcaccc atctcggccc
     1141 gcccgccgac ccggagtgcg cactggacga gctcaacggt gctccctacc gccgggcgat
     1201 gtccgtccgg gtcctgctca ccgcgctgac cgaatcaagt tgacccgccc cgtggcctgt
     1261 tgagatcgtc agaaggtgct cgtcgatcag accgtcactt acctggagat gacctccgcc
     1321 gaccagctcc tgccgggcaa ggtgccgacc ggtgagatca ccctcgacag agtcgaccgg
     1381 ggcgagctgg acctgatccg ctcgaccatc ggccggatcg gaactccaca tcactggtcg
     1441 agtctcgcct ggccggagca gcaatggttg gacgtgctgg cccgtcccag cgtgcggagc
     1501 tggatagcgc gcgtcggcat cgacgtcatc ggcatggtac agatggagac gcatcaccgg
     1561 ggagatgtcg agatatggga tctcggtgcg gtgaaccggg tgtggctgca cacctcgtct
     1621 ttcgaccacc cgcatgccct gcctaactac tgcaaccgag gatttcgacc gttccggctc
     1681 gaacacagac cgcgcgaact gcctaccggt cctccgcagc gctgccgttg agttcgccga
     1741 cagtgagcgc acccacgaga cggctgggtg ccctacctga tcatgtgggg gtaggtgtga
     1801 tcggtgggcg ggacgaaggt ctccttgagc gcccgggggc tggtcca
//
LOCUS       DASVXZ010000295         4361 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1734444, whole genome shotgun sequence.
ACCESSION   DASVXZ010000295 DASVXZ010000000
VERSION     DASVXZ010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4361
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1734444"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VF788_05980"
     CDS             <1..191
                     /locus_tag="VF788_05980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933728.1"
                     /translation="RTARENGRPGQGAQQRHRAATDRRFTTEGAAVALVVRAATSSRT
                     SHRPSAATAGPRSRYRST"
     gene            510..1652
                     /locus_tag="VF788_05985"
     CDS             510..1652
                     /locus_tag="VF788_05985"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEX8933729.1"
                     /translation="MTASFHLGRIGGIRIGVHWSVLVIFALIAWGLATSRFPAVSPQY
                     GTAAYVTAAVLTAVVFFASLLAHEISHALVARRNGVRVQDITLWLFGGVARLSGESPN
                     PGAELRIAGIGPLVSLLLGVVFFGVAGVLKASGYEGLVLAGFAWLGGINIALAVFNVI
                     PAAPLDGGRLLRSIIWWRTGDRLKATRWSSRTGQIFGWVLVALGLVTFFTGGDFGGLW
                     LALIGWFLAGAATAESQQATVRGQLGELAIRDIMTLNPVTAPASMTVQDLLNSDLIRH
                     RHSTFPLVENGGMPIGLVTFNQIRRVAPQARATTRLRDIACPLEQVAQARPEEPAADL
                     LPRLSECAEGRALVLSDGVLVGIVSPSDVSRVLRWMGVPGNDPQRV"
     gene            complement(2277..2633)
                     /locus_tag="VF788_05990"
     CDS             complement(2277..2633)
                     /locus_tag="VF788_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsr2 family protein"
                     /protein_id="HEX8933730.1"
                     /translation="MAQKVITEFIDDIDGSPAERTFTFAVDGTTYEIDLSTENIAEFT
                     SAVGGFIESARKVKGSRSSNGRRAHNAGANGGRQSREQTQAVRDWARQQGHNISNRGR
                     IPSSIQQAFDEAHAAA"
     gene            complement(3505..4083)
                     /locus_tag="VF788_05995"
     CDS             complement(3505..4083)
                     /locus_tag="VF788_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933731.1"
                     /translation="MILPALLGDYSGMGRAGMVGDVITGQSTGLLIGLVFGLIFVEVN
                     SGDVASHWSFGLRVTGVMIAVILFVGLLRRRRSLDRAGKAAGRFDRRYWVVMVVEVVA
                     LLGGLVIINRVLDADRFTVAWVAVVVGVHFFGLGSIWRDRVLYLVGAVLTLLGLAGFL
                     VGVAGGSAGAIALVSGVGSGVALFLVVGLALL"
     gene            4181..>4361
                     /locus_tag="VF788_06000"
     CDS             4181..>4361
                     /locus_tag="VF788_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933732.1"
                     /translation="MLRVAINSQRWRAARLLEHQTGLAVCASDPLKLHYSWCLSRIGA
                     GPRERLSMNAGCGSRI"
BASE COUNT          783 a         1485 c         1338 g          755 t
ORIGIN      
        1 agcggaccgc tcgagagaac ggtcgccctg gtcaaggggc ccagcagcgg catcgggccg
       61 cgaccgaccg ccgatttacc accgagggcg cggcggtggc gctggtggtc cgcgccgcaa
      121 ccagctcgag aacctcgcat cggccatccg cagcgacggc gggaccgcgc tcgcgctaca
      181 ggtcgacgtg accgagcagc ggaaagcccg ggacgcggtc gagccaacct caggacgtcc
      241 actggacaga tacggcactc accgagaaag caaagatcac catggtgaag tcatccccct
      301 ggccttcagc aaacacgcgg actccgattg gcgagccacc ttcgcagttg tccttcaaac
      361 gcgcctgatg gggactgccg tttgcctcgg cgtgcgccgt tgcccttcca tgtccccgat
      421 ctcaccgtgg aggccgcgcc ggggcctcgt accggtgacg cgctgtaact tcgggtcagg
      481 aactcaaccg tcggatattt ttgacgagca tgacagcaag ttttcatctc gggcggatcg
      541 gcggtatccg gatcggcgta cactggagcg ttctggtgat cttcgcgttg atcgcttggg
      601 gcctggcgac gtcgcgcttc ccggctgttt ccccgcagta cggcaccgcc gcttacgtca
      661 ccgcggcggt gctgaccgcg gtggtgttct ttgcgtcgct gcttgcccac gagatctcgc
      721 atgcgctggt ggcgcgccgc aacggcgtgc gcgtacaaga catcacgctg tggctgttcg
      781 gcggggtggc ccgattgtcc ggagaatccc ccaaccctgg tgcggagctg cgcatcgccg
      841 ggatcggccc gttggtaagt ctgctcctcg gggtggtgtt cttcggagtg gccggcgtgc
      901 tcaaggcgag tggctacgaa ggtctcgtgc tggccggctt cgcgtggctg ggcggtatca
      961 acatcgcact tgcggtgttc aacgtgatcc cggcggcccc gctagacggc ggccggctgc
     1021 tccgctcgat catctggtgg cgtaccggtg accggctcaa ggccacacgg tggtccagcc
     1081 ggaccggtca gatcttcggc tgggtgctcg tggcgctggg cctggtcacg tttttcaccg
     1141 gtggcgactt cggtggtctg tggctcgcgc tcatcggctg gttcctggcc ggtgcggcca
     1201 ccgcggaaag ccagcaagcc accgtccgtg gccaactcgg cgagctagcc atccgggaca
     1261 tcatgaccct gaacccggtg accgcaccgg catcgatgac ggtccaggat ctgctgaaca
     1321 gcgacctgat ccggcatcgg cactcgacat tcccgttggt cgagaacggc ggaatgccga
     1381 tcggcctggt caccttcaac cagatccggc gagtcgcacc gcaggcacgg gccaccaccc
     1441 ggctgcgcga catcgcctgc ccgctggagc aggtggccca ggcccgaccg gaggaaccgg
     1501 cggccgacct actgccgcgg ctaagcgagt gcgccgaggg gcgcgccctg gtcctctccg
     1561 acggcgtact ggtcggcatc gtttcgccgt cggacgtgag ccgcgtcctg cgctggatgg
     1621 gtgttcccgg caacgacccc cagcgggtgt agtgagtggg accgcacggt ccggtcctgc
     1681 gacggcagta gagacccgcc agtcccgccc tgccgtttca tcgcagccga cgaggtcgca
     1741 ctcccacgac ggcgaactag atcagctgcc tgcagtacgc tcaggagctc gtttattcct
     1801 ccgtccaatc tggcggcagg atgtgagatc acgcgcagca tgcagacacc cgcccgcgcc
     1861 gtaccgcact agcggctaat ttgccgcttg gacggccttg gcagcggtct cgataagctg
     1921 aactaggcca accggtacgt cgttgcaacc tgcaagccat gcaactcaac aagaataagg
     1981 ctctgctgat tgtgtgccga accggagggg ggtggtgcca atatgcctgg agtctccgtg
     2041 catcgtggcg cagaagccac agccaacctg aagcccggtc acgcggatac ttcacgaggt
     2101 attgaccggc tctttggacc tggcagacgc agatggaaca gctgaactga gctccacttc
     2161 caccgagcga cgcgctcggc ccagcatctg catgagctgg tgcctggaca gtgtggaggt
     2221 gagttacggc gggctgttcg gcgccgccgt aactcacctc gatggttggt tatcgactac
     2281 gcggctgcgt gtgcctcatc gaacgcctgc tggatcgagg acgggatcct gccccgattg
     2341 ctaatgttgt gaccctgctg gcgggcccag tcccgcacag cttgagtttg ctcgcgggac
     2401 tgccgaccgc cattagctcc ggcgttatgg gcgcggcgac cgttgctgct tctgctgccc
     2461 ttgaccttcc gggcgctttc gatgaatccg ccgacggcag aggtgaactc tgcgatgttc
     2521 tcagtggata ggtcgatctc gtaggtggtg ccatcgacag cgaaggtgaa tgtccgctcg
     2581 gcgggtgatc cgtcgatgtc gtcgatgaac tcagtgatta ccttctgcgc catgttgggg
     2641 ttctctcctt ggaaacacta cgtcgggtta ccgcgcgact ggggcgccct tgcgctgcgg
     2701 tacccctgtt ctatcacaac acgcacactg ggtgttaatt ccccaccgtt gcggctgcgg
     2761 ggtgcgctgc ggctggtgca atgccagctg cgacgtatgc tgccctcgtc gctgcgactt
     2821 ccacctctga tctggcgaac gaccgatgat agccgctgcg ttggttagcg tacgttgggg
     2881 tataggtagt tttgcccacc cagtaaccga cttgccggtc ggtgagccct gctgggtgga
     2941 tgagagcttc gctgtggcat agccgggtcg gatgcacatc ggtaccacat cccacgcgaa
     3001 ccgtaacgcg gaacccgatc cgcgccgaca cgcaaccgta accactgtgg aggattcgcc
     3061 acccggttgc ggcccttagc ctgcgttacc ccccttggaa agggtgtccg gcccgcttcc
     3121 gatcctctga gcggggccgg accatccaga tggtcaagga acatcagccg ggctcgcacc
     3181 acgtcggcgg ctactccccg ctcgacgcgc tccgcccgat cagcccccat gcccgcgagt
     3241 tacctgatct agctccgaca gtcgtcaccc gacccacttg atgatccagt agcagcccac
     3301 gcacgactcc tccccagcaa cctagccata ctgctcggcg cgcgggactg gccttttcgt
     3361 cagcgccgaa accgtggcgg cgttcatcac caccgcacaa actcagggcg cattcccgga
     3421 agtcatcgat gtgaccagcg ccctacagcc tagacagaga ccgcctggct caagggctcc
     3481 ctcaccggtt gacgctgacc ggcctcacag cagtgccagg ccgacgacca ggaatagcgc
     3541 cacgcccgac ccgaccccgg acaccagcgc aatcgccccg gcggacccac cggccacgcc
     3601 gacgagaaaa cccgccagcc cgagcaaggt cagcaccgca cccaccagat aaagcaccct
     3661 gtcccgccag atcgagccca ggccaaagaa atgcacaccg acgacgacag cgacccaggc
     3721 cacggtgaac cggtcagcat ccagcacccg attgatgatc accagacccc cgagcagggc
     3781 caccacctca acgaccatca ccacccagta acgacgatca aaacgacccg cagccttccc
     3841 ggcccggtcc aacgagcgcc gtcgccggag caggccgacg aacaggatca ctgcgatcat
     3901 cacaccggtg actcgcagcc cgaatgacca gtgagacgcc acatcaccgc tgttcacttc
     3961 gacgaagatc aacccaaaca ccagaccgat cagcagcccc gtggactggc cggtgatgac
     4021 atcccccacc atccccgcac gccccatccc ggaatagtca cccagcaacg ccggcaggat
     4081 caactacagc cgaatcagca ggcgcggatc cccgccacca accagctggc attgatgtac
     4141 ggatagggat ccgccaaccg ttacccccga ggggcgccga gtgctccggg tcgccatcaa
     4201 ttcccagcgc tggcgggccg cgcggctgct ggagcaccaa accggtctcg cggtgtgcgc
     4261 cagtgatccc ctcaagctgc actacagctg gtgcctcagc aggatcggcg ccgggccacg
     4321 agagcggttg agcatgaatg ctggttgcgg gtcaaggatt c
//
LOCUS       DASVXZ010000296        12421 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_553903, whole genome shotgun sequence.
ACCESSION   DASVXZ010000296 DASVXZ010000000
VERSION     DASVXZ010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12421
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553903"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            230..994
                     /locus_tag="VF788_06005"
     CDS             230..994
                     /locus_tag="VF788_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933733.1"
                     /translation="MDGVGVRRGASTLLELVNWQVELDEKWVVLGPNGAGKTTLLRLA
                     ATELHPSYGTVHVLGERLGRTDVFELRPRIGFSSASLAGRIPGDEVVSDLVVSAGYAV
                     LGRWRERYEALDNARAAGLLAALGVERMAGRRFGTLSEGERKRVLIARALMTDPELLL
                     LDEPAAGLDLGGREELVARLATLAADPDSPATVLVTHHVEEIPPGFTHAMLMRDGTVV
                     ALGLLEAVLNEENLSKTFGLDLVLRRSGTRYFAYRR"
     gene            1052..1621
                     /locus_tag="VF788_06010"
     CDS             1052..1621
                     /locus_tag="VF788_06010"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEX8933734.1"
                     /translation="MSGGVDLNPHNLLNIFLHHLEVPAAFIPGSLILGGAAWWLAPRR
                     GWDRAPAVLGGCSLALVLALTVVRPGGHFPGGGLNPLLTLRLCTVGSFSLTHLYEQLN
                     VALFVPFAIFGTLATRRPALVAISCALISAFAEFVQGTTGGGECQVRDIAHNALGGVL
                     GALLAMALLRLRTRRTPDIKAEVGAGSGR"
     gene            complement(1651..2487)
                     /locus_tag="VF788_06015"
     CDS             complement(1651..2487)
                     /locus_tag="VF788_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009079102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX8933735.1"
                     /translation="MNVTVVGSVNLDLVAAVPRLPEAGETLTATGLTRIPGGKGANQA
                     LAVRRCGLPVQLVAAVGTDPQADTALKLLSREGVSLDRLQRVTEPTGLALIAVDPAGE
                     TTIVVVPGANAALQVDAEDVAGADAVLTVLEVPDQAVTAAARHAAGLFVLNAAPARPV
                     PPEVLHRADLVVVNRAEYAALPGLGTARAVAITDGPRGAVLLRNGSQVAAAVPPQVSA
                     VDGAGAGDAFIGAAVAGLLHGLPDDHLLSRACAAGALAATRPGAQPSMPTAAEIDEVL
                     AQ"
     gene            2758..3198
                     /locus_tag="VF788_06020"
     CDS             2758..3198
                     /locus_tag="VF788_06020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933736.1"
                     /translation="MLAASPPPCMVLHCSDEPSDLRDELHIEGSDGTWPAYVCATHKS
                     RIDQGEPWLWVPWNRLKGVGSDMSEGCILMGEELAGFGLVVDADVRMGTSLVFSPDRA
                     EGRETTTLAIDGRLFGANQHVSLELILNPEIVARLKEALRFLRP"
     gene            complement(3211..3975)
                     /locus_tag="VF788_06025"
     CDS             complement(3211..3975)
                     /locus_tag="VF788_06025"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX8933737.1"
                     /translation="MMMIGPAQQAVSALACVAATFAFQADQQQLAPAGSVVSHGPTAS
                     PRIALTFDSNMTDVMLRKLNSGQVKSYANVAVIDELQRSGTPATFFLAGKWVERYPDL
                     TRRIAADPSFELASHSYAHLGFTPHCYGLGTMPTEQMAADVERSFQILVPFAGRHTRY
                     FRFPGGCYDANALRAIGPAHCTVIQYDIVGGDPFNNNAAAISDNVLQGAHNGGIVVLH
                     ITEANAPRTADALPAIITGLRDRGYRLVRLSELLKE"
     gene            4057..4839
                     /locus_tag="VF788_06030"
     CDS             4057..4839
                     /locus_tag="VF788_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEX8933738.1"
                     /translation="MNIIVLIKQVPDTWSERRLADSDHTLDRGAADVVLDEINERAVE
                     EALKIKESSSGDVTAVTMGPPRATEAIRKALSMGADKAVHLSDEGLHGSCAVGTAKAL
                     AKVIDTLGDVDLIIAGNEATDGTMGAIPAMVADLLGLPELTHARKVTVEGRTVTVERE
                     TDDGVTILRADLPAVISVNEKINEPRYPSFKGIMAAKKKPVSTLSLADVGVDRSAVGL
                     ASATSTVTESKPRPPREAGHVVTDGGDGAAELAQYLISQKLI"
     gene            4851..5810
                     /locus_tag="VF788_06035"
     CDS             4851..5810
                     /locus_tag="VF788_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEX8933739.1"
                     /translation="MAELLILVEHSGGEVKKVTNELLTAAAKLGEPSAVVVGVPGTAD
                     KIADRLAAYGAAKIYVAESDQVDQYLTAPAVGVLAALVASAQPAAVLISASPDGKEIA
                     GKLAVRTNSGLLSDAVELAEDGTATHSVFGGSYLAKSKATTPVAVITVRAGAIEPVEV
                     PGAAVKQAVEVPAVSATRTAKIIERQPAKGGDRPELTEASVVVSGGRGVGSADNFAVV
                     EKLADALSAAVGASRAAVDSGYYPHQFQVGQTGKTVSPQLYVALGISGAIQHRAGMQT
                     SKTIVAVNKDPEAPIFEIADFGVVGDLFTIAPKLAEIVAKRKT"
     gene            6175..6990
                     /locus_tag="VF788_06040"
     CDS             6175..6990
                     /locus_tag="VF788_06040"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="HEX8933740.1"
                     /translation="MSTPSLLVTASASTDSAHYTLLIAEQQADIRAAQRLRHRVFAGE
                     MGAVLHTPEPGLDIDHYDAHCDHLVVREDSTGEIVGTYRMLSPKGARRAGGLYCETEF
                     LVATLSGLRETLVETGRSCVHPEHRTGAVVNLIWTGIARYLLLTGYRWLVGCASVPLR
                     TAGAPEGALARSVWDTVRARHLAPEQYRVIPRRPWHADLSSRPQRAGLPPLLRGYLRL
                     GAWVCGPPAHDPGFGVADFLVLLALDRVDPRYLRHFLGHTVGNSGGDSRGVEA"
     gene            6987..7856
                     /locus_tag="VF788_06045"
     CDS             6987..7856
                     /locus_tag="VF788_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX8933741.1"
                     /translation="MRGQHLWMPVSPCGKSCLPPAESVPAVARGRQLLRLLATATMLV
                     AGVVLAAVLPLLGPARRERALRAWHQAVLRALRIQLEISGGDRFSAPAVGILVVSNHV
                     SWLDLVVLSAVQPLRMVAKCEVRGWPVIGPLARRTGTIFVDRERLSTLPRTVEAISRE
                     LAGGAAIGVFPEGTTRCGLATGRFRPAVFQAALDSATPVRPVALRYCLAGAGATTVAS
                     FVGSTTLWEAVLRVSGVHGVVVKVHLLPPLPTAGLDRRTLATRAEAAVTAVTMPAVTL
                     PALTSVLETNRTH"
     gene            7922..9124
                     /locus_tag="VF788_06050"
     CDS             7922..9124
                     /locus_tag="VF788_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HEX8933742.1"
                     /translation="MTYLDHAATTPMLPEAVAAMSHALSTLGNASSLHGSGRRARRTV
                     EECRESIAEALGARPSEVVFTGGGTEGDNLAVKGLFWQRRTADPRRTRVLASAIEHHA
                     VLDAVSWLADHEGAEVEWLEVDGYGRVHPETLRAALTRDPGSVTLVTLMWANNEVGTV
                     APIREVAELAAEYEVPLHTDAVQAVGQLPVHFGRSGAAALTLTGHKLGGPYGAGALLL
                     GREVVATPLLHGGGQERDVRSGTLDVPSIVGLATAIRYAEAAQPRTTVELAALRDELV
                     DGILAKVPDAVLNGDPGDGVIDGGPSRLPGNAHVTFPGCEGDSLLMLLDARGIECSTG
                     AACTAGVAQPSHVLLAMGATAAAARGSLRFSLGRTSTAADVAEVLGAIEPVVARSRSA
                     ANRRTRAS"
     gene            9132..10217
                     /gene="mnmA"
                     /locus_tag="VF788_06055"
     CDS             9132..10217
                     /gene="mnmA"
                     /locus_tag="VF788_06055"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEX8933743.1"
                     /translation="MKILAAMSGGVDSSVAAARAVDAGHEVVGVHLALSAQPGTLRTG
                     ARGCCTKEDAADARRVADVLDVPFYVWDFAEQFSADVVDDFVAEYAAGRTPNPCLRCN
                     ERIKFTALLERACALGFDAVCTGHYARLSWIDGRGVLRRAVDADKDQSYVLAGLSADQ
                     LAHALFPVGDTTKAGIRAEATVRGLAVAGKPDSHDICFIPSGDTRAFLAQRLGDRPGE
                     LVDGQTGEVLGSHSGVHGFTVGQRRGLGLARPASDGRPRFVLGLEPVTGTVRVGSAAH
                     LDVAVIEAENPVWAAGAPHGPLECVAQVRAHGGCAGAVAEPVGNGLLVQLRKPLRGVA
                     PGQAVVLYRPDPAGDIVLGSATITATR"
     gene            complement(10287..10490)
                     /locus_tag="VF788_06060"
     CDS             complement(10287..10490)
                     /locus_tag="VF788_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933744.1"
                     /translation="MSDALNSAELDRQSVELLPARTVLSTFTQAANGHDAWGGIGFGI
                     PILDKIFPGSGNAVGGAGQSANG"
     gene            complement(10731..10952)
                     /locus_tag="VF788_06065"
     CDS             complement(10731..10952)
                     /locus_tag="VF788_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933745.1"
                     /translation="MSRVLTLANLAEQHVELLPARTVLSTFPAQGGGGKGGGVGDVGG
                     AITTLLGMSPGGNSTAGPDGADGHPNHND"
     gene            11271..12299
                     /locus_tag="VF788_06070"
     CDS             11271..12299
                     /locus_tag="VF788_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HEX8933746.1"
                     /translation="MTDLPLWPPGTATGIGSMPGTDIHEAARTMIGELPQLPYLPELP
                     GRGAGADLIGRTAALLVDLAVELVPSGYRVAARPGRDHRRAVDLLRGDLDALEEAMDS
                     AGARPDMLKLQAAGPWTLAAEVELRTGHKVLTDAGALREFTASLAEGLRMHAAEVSRR
                     IGVATVVQLDEPGLPAVLAGAVPTPSGYGTVPAVPESDAVDLLRGVLGALPAPRIVHC
                     CAPRPPLALLRRAGADALAVDAELLAGAPRATVDALGEAWDAGATVLLGLVPALQPAV
                     PPTLGGLARPALDLVDRLGFNRELLAERCVPTPSCGLAGATAVWARQALTLARELGEA
                     FLDPPDSW"
BASE COUNT         1939 a         3978 c         4307 g         2197 t
ORIGIN      
        1 ctcgccatcg gccgagagca ggcacacctc gacggcctca gcgatcgagg acgccactgc
       61 gaagcgcacc ccgccacctt cggcgtgcga accgagcggg aatggtcggc cgacctgtgg
      121 gcgcgtcaca gacacccatt ctgccgaccc gcacaatgat tgggtgaacg cgcggcatag
      181 gcagctagcc gggagtaccg cacttgatct cactgatctc gtggtgcgga tggacggcgt
      241 gggcgtccgg cgcggcgcga gcacgttgct ggagctggtg aactggcagg tggagctcga
      301 cgagaaatgg gtcgtcctgg ggcccaatgg cgctggcaag accaccctgc tgcggctggc
      361 cgcgaccgag ctgcatccaa gctatggcac ggtccacgtg ctcggggagc ggctgggtcg
      421 caccgatgtg ttcgagctgc gcccgcggat cggcttttcc tcagcgtcac tggccggccg
      481 gatccccggt gacgaggtgg tgtccgacct ggtcgtcagc gccggctacg cggtgctcgg
      541 ccggtggcgg gaacgctacg aggcgctcga caacgcgcga gctgccgggt tgctggccgc
      601 cctcggcgtc gagaggatgg ccgggcggcg tttcggcacg ctgtctgagg gcgaacgcaa
      661 gcgggtgctg atcgccaggg cgttgatgac cgatccggag ctgctcctac tcgacgagcc
      721 cgcggccggg ctggatctgg gtggccggga ggaactggtg gcccggctgg ccacgctggc
      781 cgccgatccg gattccccag cgacggtgct ggtgacccat cacgtggagg agatcccacc
      841 gggcttcacg cacgccatgc tgatgcggga cgggacggta gtcgccctgg gactgctcga
      901 ggcggtactc aacgaggaga acttgtcgaa gaccttcggt ctggacctcg tgctccggcg
      961 gtccgggacg cgttacttcg cctaccgccg ctgagcggtg cccggcaggc gacgttcatg
     1021 ggacatcgag cgaggcgcta gcgtgctccg cgtgtccggc ggagtagacc tcaatcccca
     1081 caaccttctc aacatcttcc tgcaccactt ggaggtgccg gccgccttca tccctggatc
     1141 gttgatcctc ggtggtgccg cttggtggct ggcgccgcgt cgcggctggg accgggcgcc
     1201 cgcggtgctc ggtgggtgca gcttggcgct ggtactggcg ctcaccgtgg tcaggccggg
     1261 ggggcatttt cctgggggcg gtctcaaccc cctgttgacc ctgcgtctgt gtacggtcgg
     1321 cagcttctcg ctgacccatc tctatgagca gctcaacgtg gcactatttg tcccgttcgc
     1381 catcttcggc actcttgcaa cccgccgtcc ggcgctcgtc gcgatctcct gcgccctcat
     1441 cagcgccttc gcggagttcg tgcagggcac taccggcggc ggcgaatgcc aggtccgtga
     1501 tatcgcccat aacgcgctgg gtggcgtcct tggtgcgttg ctggcgatgg cactgctgcg
     1561 gctgcggacg cgacggaccc ccgatatcaa ggcagaagtc ggagccggct caggacgttg
     1621 aggcaccggt atcgatgatc attcgcacga tcactgagcc aacacctcgt cgatctcggc
     1681 cgcggtgggc atggacggtt gggcaccggg ccgggtggcc gccagcgcac ccgccgcgca
     1741 ggccctggag agcaggtgat cgtcgggcag cccgtgcagc aaacctgcta ccgcggcacc
     1801 gatgaacgcg tcaccggcac cggcgccatc cacggcgctg acctgcgggg gtaccgcggc
     1861 tgccacctgc gagccgttgc gcaacagcac tgctccgcgc ggcccgtcag tgatggcgac
     1921 agcacgggcg gtacccaggc caggcagcgc ggcatattcg gcccggttga ccaccaccag
     1981 gtcggcacgg tgcagcacct ccggtggcac cgggcgggcg ggggctgcgt tgagcacgaa
     2041 cagcccggcg gcgtgccggg cggctgcggt gacggcctgg tcgggcacct ccagcacggt
     2101 gaggaccgca tcggcaccgg ccacgtcctc ggcgtccacc tgcagggccg cgttcgcgcc
     2161 gggtaccacc acaattgttg tctcgcccgc gggatcgacc gcgatcagcg ccagaccggt
     2221 cggctcggtg acgcgttgca ggcggtccag actgacgccc tcgcgactga gcagtttcag
     2281 cgcggtatcg gcctggggat cggtgccgac cgcggcgacg agctggaccg gtagtccgca
     2341 ccgccggacg gccagcgcct ggttggcccc tttgccgccg gggatgcggg tcaagccggt
     2401 tgcggtcagg gtctcgccgg cctcgggcag ccgcggcacc gcagctacca ggtcaaggtt
     2461 gacgctgccg accacggtca cattcacgag gccatctcac cacgacgccg gatggtcacc
     2521 cacgtcatca tccgccgagc gtggtcggct gctcggctcc ggtgggtcca ccgatcaact
     2581 gtgctgaaac aaagccgcag gtagtgggta ttcaccaccc gcagtattcg ctcctcggtg
     2641 atgacgctga gtcagaacag cccggcagcc accccggctg cgagatcgat ccggtggaag
     2701 ccatcattcg ccgcatgtga tggccgacgc ggggccagcc cgctaccgtc ttgaagaatg
     2761 ctggccgcct cgccaccgcc gtgcatggtg ctgcactgct ctgatgagcc gagcgacctg
     2821 cgggatgagc tgcacatcga gggaagcgat gggacttggc ccgcgtatgt gtgtgcgacc
     2881 cacaagagcc gaatcgacca gggcgaaccc tggctgtggg tgccgtggaa ccggttgaag
     2941 ggtgtcggct ctgatatgtc ggagggttgc atcctgatgg gtgaggagtt ggccggcttt
     3001 ggtctcgttg ttgacgccga tgtccgaatg ggcactagct tggttttcag tcctgaccgc
     3061 gccgagggcc gggagacgac cacgttggcg atcgatggcc ggctgttcgg ggccaatcag
     3121 catgtctccc tcgaactgat cctcaatccg gagatcgtgg cgcgcctcaa ggaggcattg
     3181 cgttttctcc gcccataagg tttttgcgct ttactctttc agcagttcag acagcctgac
     3241 caatcggtat ccgcgatccc gaagtccggt gatgatggcg ggcagcgcat cagcagtccg
     3301 tggtgcgttg gcttcggtga tgtgcagaac gactattcca ccgttgtgcg ccccttgtag
     3361 tacattgtca ctgatggcgg ccgcgttatt gttgaaagga tcaccaccga cgatgtcgta
     3421 ctggatcact gtgcaatggg ccggcccgat cgcccgcaag gcgttcgcgt cgtagcagcc
     3481 acccgggaat cggaaataac gggtgtgtcg accggcgaag ggcacaagga tctggaacga
     3541 gcgttcgacg tccgcggcca tctgttcggt gggcatcgtc cccaggccat aacaatgggg
     3601 agtgaagccg agatgggcgt atgaatggct ggccagctcg aaactgggat cggcggcgat
     3661 cctgcgggtg agatcgggat aacgctcgac ccatttgccg gccaggaaga acgtcgcggg
     3721 tgtgccgctc cgctgcagct cgtcaatcac cgcgacgttg gcgtaggact tgacctgtcc
     3781 actgttcagt tttctgagca tcacatcagt catgttggag tcgaaggtca aggcgatgcg
     3841 gggcgacgcg gtcggaccgt ggctgaccac cgatccggca ggtgcgagct gctgctggtc
     3901 cgcctggaag gcgaatgtgg cggctacgca cgccagtgcg cttactgcct gctgcgcagg
     3961 cccgatcatc atcatccggg tagcttgcca ctgaacccag tgagcgcaat cacccttcgg
     4021 taggctgagg ggctactcgc cggtaacgtt gcgggcatga acatcatagt tctgatcaag
     4081 caggtgccgg atacctggtc agagcgcagg ctggccgatt ccgaccacac tcttgatcgt
     4141 ggcgcggcgg acgtcgtcct cgatgagatc aacgagcgcg cggtcgagga ggcactcaag
     4201 atcaaagagt cgagtagtgg ggacgtcacc gccgtcacga tgggtccgcc acgagccacc
     4261 gaagccatcc gcaaggcgct gtcgatggga gcggacaagg cggtgcacct gtccgacgag
     4321 ggcctgcacg ggtcgtgcgc agtgggcacc gccaaggcgc tggccaaggt catcgacacg
     4381 ctcggcgatg tcgatctcat catcgccggc aacgaagcca ccgatggcac catgggcgcc
     4441 atcccagcga tggtcgccga cctcctcggg ctgccggagc taactcacgc ccgcaaggtt
     4501 accgtcgagg gacgcaccgt aaccgtggag cgggagaccg acgatggagt cactatcctg
     4561 cgggcggatc ttcctgcggt gatcagcgtg aacgagaaga tcaacgagcc ccgttacccg
     4621 tcgttcaagg gcatcatggc ggccaagaag aagccggtaa gcacgttgtc gctggctgac
     4681 gtgggcgtcg atcgcagcgc cgtcgggctc gccagcgcca cctcgacggt gactgaatcc
     4741 aagccacgcc ctccccgcga ggctggacat gtcgtcaccg acgggggaga cggcgcggct
     4801 gagctggctc agtatctcat cagccagaag ttgatctgag gagaaccgtc atggcagagc
     4861 tcctgatcct cgtcgagcat tcaggcggcg aggtgaagaa ggtgaccaac gaactgctca
     4921 ccgctgccgc gaagctgggc gagccctcag cggtcgtggt cggtgtgcct ggcaccgcgg
     4981 acaagatcgc cgaccggctg gcggcctacg gcgcagcgaa aatctacgtt gcggagtccg
     5041 accaggtgga tcagtacctc accgcgccag ccgtgggcgt gctcgcggcg ttggtggcgt
     5101 cggcccagcc ggccgcggta ctcatctctg cctcgccgga cggcaaggag atcgccggca
     5161 agcttgccgt gcgcaccaac tctggcctgc tctccgacgc cgtcgagctg gccgaagatg
     5221 gcaccgctac gcactctgtg ttcggcggct cctatctcgc caaatccaag gccaccacgc
     5281 cggtcgcggt gatcactgtt cgagccggag ccatcgagcc ggtcgaggtc ccgggcgcag
     5341 ccgtaaagca ggccgtggag gtcccggcgg tgagcgccac cagaacagcg aagatcatcg
     5401 aacgacagcc ggcgaagggc ggtgaccggc cagagctcac cgaggccagc gtggttgtct
     5461 ccggtggtcg cggcgtcggc tcggcggaca atttcgctgt ggtggagaag ctcgccgacg
     5521 cactcagtgc cgcggtcggg gcatcccggg ccgcggtcga ctccggctac taccctcacc
     5581 agttccaggt cgggcagacc ggcaagacgg tttccccgca gctctacgtc gcgctcggca
     5641 tctccggtgc tatccagcat cgagcaggga tgcagacgtc caagacgatc gtcgcggtca
     5701 acaaggaccc ggaggctccg attttcgaga tcgccgactt cggcgtggtc ggcgacctgt
     5761 tcaccatcgc tccgaagctc gccgagatcg tcgccaagcg caagacctaa acctcggcgt
     5821 gtcgtgctct ggtgcccggt gattctgcat tcatgaccgt gtcatcgatt gatgatatgg
     5881 caacgttgga aggcgcgcct tttgcgtgag agggcgcggt gcgggaaccc gacggcttct
     5941 gatctcgaca gtcggcgtga gctgagatcg tgagaatcat atgggcgaag aagaaaacga
     6001 ttagctcgac gaattcgtgc ggggtcagga cgccatgtga agggatccac aacggccggg
     6061 aaccgttgtg tgctcgtatc gtgacggttg gttacccagg gattcacaga cattccatcg
     6121 gctggtcacg gcggtgttgt tcgcacaacg tgcaggaccg atatacccag cgctatgagc
     6181 acaccctcgc tgttggtgac cgcttctgct tccactgact ccgctcacta cacgctgctg
     6241 atagctgagc agcaggccga catccgcgct gcccaacggc tccgtcaccg ggtgttcgcc
     6301 ggcgagatgg gcgctgtgtt gcacaccccg gagcccggcc tggacatcga tcactacgac
     6361 gcacactgcg accacctggt ggtccgtgag gactcgaccg gcgagatcgt cggcacctac
     6421 cggatgctct cccccaaggg cgcccggcgt gccgggggat tgtactgcga gaccgagttc
     6481 cttgttgcca cgctcagcgg cctgcgcgag accctggtgg aaaccggccg ctcttgcgta
     6541 cacccggagc accgcactgg agccgtggtg aacctgatct ggacggggat tgcgcgttac
     6601 ctgctactca ccggttaccg ctggctggtg ggttgcgcct cggtgccact gcgtactgct
     6661 ggcgccccgg agggcgcgct tgcccgcagt gtctgggaca ccgtgcgtgc ccggcatctc
     6721 gcgcccgagc agtaccgggt gataccgcgt cggccgtggc atgccgacct gtcgtcacgg
     6781 ccccaacgcg ccggcctgcc tccgctgctg cgcggctacc tccgcttggg tgcgtgggtg
     6841 tgcgggccgc ctgcgcatga tcccgggttc ggggtggccg acttcttggt gttactggcc
     6901 ctggaccggg tggatccccg ttacctgcgc cattttctgg gccacacagt gggtaattca
     6961 gggggcgact cacggggcgt cgaagcatga ggggccagca tctgtggatg ccggtgtcac
     7021 cgtgcgggaa gagttgcctt ccaccggccg agtcggtgcc ggcggtggcg cggggccgcc
     7081 agctgctgcg gttgctggcc accgcaacga tgctggtagc tggagtggtg ctggctgccg
     7141 tgctcccgct gctcggtcca gcgcggcggg agcgggcgct gcgagcctgg caccaggcgg
     7201 tgctccgggc gctgcggatt caactggaga tttccggtgg cgaccggttc tccgccccag
     7261 ccgtcggcat cctggtggtc agcaaccacg tgtcctggct cgacctggta gtgctgagcg
     7321 cggtgcagcc actgcggatg gtggccaaat gcgaggttcg aggatggccg gtgatcggcc
     7381 cgctggctcg ccggacgggc acgatcttcg tggaccggga gcggctttcc acactgcccc
     7441 gcacggtgga agcgatctcc cgtgaactcg cggggggcgc ggccatcggc gtgttcccgg
     7501 agggcactac ccggtgcggc cttgccactg gacggtttcg gccggcggta ttccaagcgg
     7561 ctctcgacag tgcgactcca gtccggccgg tggcgctgcg ctactgcttg gcgggtgcag
     7621 gcgctacgac ggtggcatcc ttcgtcggtt ccaccacact gtgggaggcg gtgctgcggg
     7681 tgtctggagt ccatggcgtc gtggtgaagg tgcacctgct cccgccattg cccaccgccg
     7741 gcctcgaccg ccgcaccctt gcgacccgcg ccgaggccgc cgtcacagca gtcaccatgc
     7801 cagcggtgac actgcccgcg ctcaccagcg tcttggagac gaaccgcact cattgacagc
     7861 atgcctaggc attctgtccg ctccaacgca gacactgcgg gcccattagg ctgggagcgc
     7921 gatgacttac cttgatcacg ctgctacgac gccgatgctg ccggaggcgg tggcggcgat
     7981 gagccacgcg ctgtcaacct tgggcaacgc ctcctccttg cacggttcgg ggcgccgcgc
     8041 ccggcgcact gttgaggagt gccgggagag catcgcggag gcattaggcg cccgcccgtc
     8101 cgaggtggta ttcaccggag gtggcaccga gggcgacaac ctcgccgtga agggcctgtt
     8161 ctggcagcgg cgcactgccg acccgcgccg tactcgcgtg cttgcctccg caatcgagca
     8221 tcatgcggtg cttgacgcgg tgtcctggct ggctgatcat gagggcgccg aggtggagtg
     8281 gctcgaggtg gacggctacg gtcgggtgca ccccgagacg ctgcgtgccg cgctgacccg
     8341 tgatccgggc tcagtgaccc tggtgacctt gatgtgggcg aacaacgagg taggcaccgt
     8401 tgcgccgatc cgcgaggtgg ccgagctcgc cgccgagtat gaggtgccgc tgcacaccga
     8461 tgcagtccag gcggtaggcc agctgccggt gcacttcggc cgctctggcg ccgcggcgct
     8521 cactttgacc gggcacaagc tgggcggacc ctatggggcc ggcgcgctgc tgctgggtcg
     8581 tgaggtggtg gccactccgc tgttgcacgg tggcggccag gagcgcgatg tccgttccgg
     8641 caccttggac gtgccctcga tcgttgggct ggccaccgcg attcgatatg cagaggctgc
     8701 gcagccgcgt accacggtgg agctcgccgc gctgcgagac gagctggtgg atggaattct
     8761 ggccaaggtg cccgatgcgg tgctgaacgg ggatccgggc gacggcgtga ttgacggcgg
     8821 gccctcgcgg ttgccgggta acgcccatgt caccttcccc ggctgcgagg gcgactcgtt
     8881 gctgatgctg ctcgacgcac gcggtatcga gtgctcgacg ggtgcggcgt gcactgccgg
     8941 cgtggcgcag ccctcgcacg tgctgctagc gatgggtgct accgcggccg cagcgcgtgg
     9001 atcgcttcgt ttctcccttg ggcgtacctc cacggcagcg gacgtggccg aggtgctcgg
     9061 cgctatcgag ccggtggtcg cccggtcccg tagcgcggca aaccggcgga ccagggcgtc
     9121 gtgaaatgcc gatgaagatc ttggcggcga tgagcggtgg ggtcgactcc tcggtggcgg
     9181 ctgcccgggc ggtggacgcc ggacacgagg tggtgggggt acacctggcc ctgtcggcgc
     9241 aaccgggaac gctgcgtacg ggagcccgcg ggtgctgcac gaaggaggat gccgccgacg
     9301 cgcgccgggt cgccgacgtc ctcgatgtcc cgttctacgt gtgggacttc gctgagcagt
     9361 tcagcgctga cgtggtggat gacttcgtcg cggaatacgc cgccggtcgc acccctaacc
     9421 cgtgccttcg atgcaacgaa cggatcaaat tcaccgcgct gctcgagcgc gcctgtgccc
     9481 tgggtttcga cgcggtctgc accggtcact acgcacgact gtcctggatt gatggacgcg
     9541 gtgtattgcg ccgggccgtg gacgccgaca aggaccagtc ttacgtgctg gcggggctca
     9601 gcgccgacca gttggcccat gccctgtttc cagtcggtga caccaccaag gccggcatcc
     9661 gggccgaggc gacggttcgc ggcctggccg tcgcgggcaa gccggacagc cacgacatct
     9721 gcttcatccc ctccggcgat acccgggcgt tccttgcaca gcggctggga gaccggccgg
     9781 gtgagctggt cgatgggcag accggagagg tcctggggag ccattccgga gtgcacggct
     9841 tcaccgtcgg ccagcgccgc gggttggggt tggcgcggcc ggcctccgat ggccgcccgc
     9901 ggttcgttct ggggctggaa cctgtgactg gaaccgtgcg ggtgggatct gctgcgcatc
     9961 tggacgtcgc cgtgatcgag gccgagaatc ccgtgtgggc ggccggtgcc ccgcacggtc
    10021 cgcttgagtg cgtcgcgcag gttcgagcgc acggcggttg tgccggcgcc gtcgcggagc
    10081 ctgtgggcaa cggcctgctg gtgcagctga gaaaaccgct gcgaggggta gctcccgggc
    10141 aagccgtcgt cctctaccga cccgaccccg ctggcgacat cgttctcggc agcgccacca
    10201 tcaccgccac ccgataatcc gacatggagc catatcgggg tcagccatag ctgataaacc
    10261 ccgatatggc tccatgtcgg gcggggttag ccattggcgc tctggccagc gcccccgaca
    10321 gcgttaccgg agccggggaa gatcttgtcc aggatgggga tcccaaagcc gatgccaccc
    10381 caagcgtcat ggccgttggc ggcttgggtg aacgttgata ggacggtacg ggccggcagc
    10441 agctccacag actgcctgtc caactcagca gagttcagtg catcagacat cgaatcctcc
    10501 tagggatttc ctggcccggg ggctccaggc atggaaaata tctcatcgtc gcctgcgcag
    10561 aggcggactt acataccgtg ccgaacgatg atggtcatga caattggtgg tcgcacctag
    10621 tttatcgagg gatgctaccg agtcgcgaag ttacttttcg aatacgtagg cagcggcgag
    10681 ggctacggaa tcaggccgct ggtgttcgtc acccgcgatt cgggctgagt tcagtcgttg
    10741 tggttgggat gaccatcggc gccatcggga cccgcggtgc tgtttccacc tggggacatg
    10801 ccgagtaggg tggtgatcgc tccgccgaca tcgccgactc caccgccttt gccgccgcct
    10861 ccctgggcgg ggaacgtcga caagacggtt cgagcgggta gcagctctac gtgctgctcg
    10921 gccaggttgg cgagggtcag tacacgggac atcgaatcct cctaggaacg cctggtgggg
    10981 ggctggccga acacgtcagt gccagcgcag cacacatatc gtgcccaata gaaatccacc
    11041 gtggcaattc gtagtcgcac gtaattgagt ggatgtgcta cttagccggt tcggattatt
    11101 gtccccgaag tgggcatgga gctgccgtcg atccgattcg tagtattcgg ttacattctt
    11161 ggtggtatgg aggttgacac agcgtcgtga gattccagtg tcttcgggac ccgctggtca
    11221 ttgcgggacg ccgacgggtg gccggttgcg tctcttgata gacattcccg gtgaccgacc
    11281 taccactttg gcccccaggt accgcgaccg gtatcggctc gatgcccggt accgacatcc
    11341 atgaagccgc ccgcaccatg atcggtgaac taccccaatt gccgtacctg cccgaactgc
    11401 ccggccgggg agctggtgcc gacctcatcg gtcgcaccgc ggcgctgctg gtcgacctcg
    11461 ccgttgagct ggttccctcc ggatatcggg tcgccgcccg gcccggccgt gatcaccgcc
    11521 gcgctgtcga cctgttacgt ggtgatctgg acgcccttga ggaagcgatg gactccgctg
    11581 gagcccgacc cgacatgctc aagctgcagg cggccgggcc atggacgctc gccgcggagg
    11641 tggaactgcg taccggtcac aaggtgctga ccgacgccgg tgcgttgcgg gagttcacgg
    11701 cgtccctggc ggagggattg cggatgcacg cggcggaggt ctctcgccgg atcggggtgg
    11761 caaccgtggt gcagctagac gaaccggggc tccccgcggt gctcgcaggc gctgtgccca
    11821 ctccgtcggg gtacggcacc gtgcccgcgg tgcccgagag cgacgcggtc gatctcctgc
    11881 gcggcgtgct cggggcgctg ccggcgcccc ggattgtgca ctgttgcgcg ccgcggcccc
    11941 cgttggcgtt gctgcggcga gcgggagctg acgcactcgc tgtcgatgcc gaactgctcg
    12001 ccggcgcccc ccgggccacc gtcgacgccc tcggtgaagc gtgggacgcc ggggcgacgg
    12061 tgctgctcgg tctggtgccg gcgctacagc ctgcggtacc acccacactg gggggcctgg
    12121 cccggcccgc gctggacctg gtcgaccggc tcggcttcaa tcgagagttg ctcgcggagc
    12181 gctgcgtgcc cactccctcg tgtggactgg caggcgccac cgcggtttgg gcccggcaag
    12241 ctttgaccct ggccagggaa ctgggggagg cgttcctcga cccacccgac tcctggtagg
    12301 gatgagccgg aaatccggtg gcgtcattcg ccggatcgtg gcgtgattgc gggatgacca
    12361 cgcttagcgc cagccggctg tcccttgcac cggtcgatcc gtccgatgag gacgccatcc
    12421 g
//
LOCUS       DASVXZ010000297         2874 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_211765, whole genome shotgun sequence.
ACCESSION   DASVXZ010000297 DASVXZ010000000
VERSION     DASVXZ010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211765"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VF788_06075"
     CDS             complement(<1..366)
                     /locus_tag="VF788_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8933747.1"
                     /translation="MTTASTVAVRVPVISLRHEARAASVVWQRELIRFTKDRARIVST
                     LVQPLLFLFVLGVGLSSIVRSGTGSVDFTTFLFPGVLATSVLFTASFSGISMVWDREF
                     GFLREMLVAPVSTTAILTGK"
     gene            complement(372..1394)
                     /locus_tag="VF788_06080"
     CDS             complement(372..1394)
                     /locus_tag="VF788_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8933748.1"
                     /translation="MGELRVAAETKETETGLESAVHVRGLVKRYAEVEAVRGIDLDIA
                     HGETFGFLGPNGAGKSTTIKILCTLVAATSGTARVAGWDVATDRAAVRRHIGLVFQEP
                     TLDSYLTGEQNLRFHGELYGVDRSGAAARREEVLRMFGLWERRGDEVHTFSGGMRRRL
                     EIARGLLHSPKVLFLDEPTIGLDPQSRASIWEYLRELHRSEEITVFVTTHYMDEAENC
                     DRIAIINEGRIVALGTPERLKAAVGKDRVQITTDDDRAAIGALRERFDLDVAVREGMI
                     TFAVSDGASFVPRLFAGLDVSIRSVTVNRPSLDDVFLAHTGTTIRDAENAGGMLHPLV
                     MQARGR"
     gene            1479..2135
                     /locus_tag="VF788_06085"
     CDS             1479..2135
                     /locus_tag="VF788_06085"
                     /inference="COORDINATES: protein motif:HMM:NF014906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEX8933749.1"
                     /translation="MAITQEDVVRTAVRLLDEVGLEGLTLRRLGCELGVSAPTLYWHV
                     RDKRALLDLVAEAIAVDYRSPVRPAHGQPWWEWLGDRAWEQYRALTAHRDAALVVAGN
                     RPTQNSLPVIEQLIGTLAEVGFPPREALESILALGHFVLGSALEHQAELARGTATEAD
                     AEMAVRLRDAADLPNLAGALRCGTAFDCDSTFQDSTFQYGLALIVAGLRARHTELTGG
                     "
     gene            complement(2132..>2874)
                     /locus_tag="VF788_06090"
     CDS             complement(2132..>2874)
                     /locus_tag="VF788_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933750.1"
                     /translation="AIAVMGISAAAVMVAAPTFILGTDLPAPTQSLQLTWLQLNLDLG
                     KIVGGLLLGVMATKKLSYHTQFLVGGIVLSLRGTRVWMTSRRAANRIRRPEVDLGAGH
                     DHADTVVPWRTLLLALFGVPVIAQLLGSMTMVEVQISTMLTVSGVVGIGLYFLAGRWM
                     HQSGPGLVWAIGHTLRGAGGVVLGVLGLLRGMPFLVVFAAFLILESTPAIVWIVQARS
                     AAQSAPETTVRPGGTRKASPRAALSRFA"
BASE COUNT          529 a          990 c          887 g          468 t
ORIGIN      
        1 cttgccggtc aggatggccg tcgtactcac cggcgcgacg agcatctcgc gcagaaagcc
       61 gaactcccga tcccacacca tcgagatccc cgagaacgac gcggtgaaca ggaccgaagt
      121 cgccagcact cctgggaaca ggaaggtcgt gaagtccacc gagccggtac cggaacggac
      181 gatcgaggac agcccgaccc cgaggacgaa caggaacagc agtggctgca ccagcgtgga
      241 cactatgcga gcccggtcct tggtgaagcg gatcaactca cgctgccaga ccacggacgc
      301 ggctctggcc tcgtggcgca ggctgatcac cggcacccgc accgcgacag tgctcgccgt
      361 ggtcatggcg ctcaccgtcc ccgggcctgc atgaccaacg gatgcagcat gccaccagcg
      421 ttttcggcgt cccggatcgt ggtgccggtg tgtgccagga agacgtcgtc caggctgggg
      481 cggttgaccg tcaccgaccg gatcgacacg tcgagcccag cgaacagccg aggtacgaag
      541 gacgcgccat cgctcacggc gaaggtgatc attccttcgc gcactgccac gtcgaggtcg
      601 aagcgctcgc gcagcgcgcc gatcgcggcg cggtcatcgt cggtggtgat ctgtacccga
      661 tccttgccca cggcggcctt gagccgttcg ggcgtgccga gcgccacgat cctgccctcg
      721 ttgatgatcg ctatccgatc acaattctcg gcttcgtcca tgtagtgcgt agtgacaaac
      781 acggtgatct cctcgctgcg gtgcagctca cggaggtact cccagatcga cgcccgactc
      841 tgcgggtcca gcccgatcgt cggctcgtcg agaaacagca ccttcggcga gtgcaacagc
      901 ccgcgggcga tctccaaccg ccgacgcatg ccgccggaaa aggtgtggac ctcgtcaccg
      961 cgccgttccc acaagccgaa catccgcagc acttcctccc gccgtgccgc agcccccgag
     1021 cggtccacac cgtagagctc accgtggaac cgcaggtttt gctcaccggt cagatagctg
     1081 tccagcgtcg gctcctgaaa caccagcccg atgtgccggc ggaccgcggc ccgatcggtg
     1141 gccacgtccc agcctgccac ccgggccgtg ccactggtcg ccgcgacgag cgtgcagagg
     1201 atcttgatcg tggttgactt gcccgctccg ttcgggccca ggaagccgaa tgtttcgccg
     1261 tgcgcgatat cgaggtctat cccgcgcacg gcttcgacct ctgcgtaacg cttgaccaat
     1321 ccgcgcacgt gtactgctga ttccagcccg gtttcagtct ccttcgtctc tgctgccact
     1381 cgcagctctc ccatgggcca cctcccttct ctaacaacgt tagagacgct actctaacgg
     1441 cgttcgagaa accatcgctt tacgacgggg gccttgcgat ggcgattacc caggaggacg
     1501 tggtgcggac tgccgtccgg ctgctggacg aggtcgggct cgaagggctc accttgcgca
     1561 ggttgggctg cgagttgggc gtctcagctc cgacgctcta ctggcacgtg cgagacaagc
     1621 gtgcgctgct cgacctggtt gccgaggcca tcgcggtgga ctaccggtct cccgttcgcc
     1681 cggcgcatgg ccaaccgtgg tgggaatggc tcggcgatcg cgcgtgggag caataccggg
     1741 cgctgaccgc ccatcgcgac gccgccctgg tcgtggccgg caaccggccg acgcagaact
     1801 cgctgccggt gatcgaacag ctcatcggca cactcgccga ggtcggtttc ccgccccggg
     1861 aggcactgga gtcgattctc gctctcgggc acttcgtcct gggatcggcg ctggaacacc
     1921 aggctgagtt agcacggggg acggctaccg aagcggacgc cgagatggcc gtccggctgc
     1981 gcgacgcagc ggacttaccc aatctcgccg gggcacttcg ctgcggaacc gcattcgact
     2041 gcgactcgac tttccaggac tcgaccttcc agtacggtct cgccctgatc gtagcggggc
     2101 tacgcgcacg tcataccgag ctgactggcg gctaagcgaa ccgtgataac gccgccctcg
     2161 gcgaagcctt cctcgtgccg ccgggccgta ccgtcgtttc cggtgcagac tgtgctgccg
     2221 agcgtgcctg gacaatccag acaatggcgg gagtcgattc caggatcagg aatgcagcga
     2281 aaacgacgag aaaaggcatc ccgcgtaaga gacccagtac gccgaggacg acacccccag
     2341 cgccgcgcag ggtgtgcccg atcgcccaca ccaggccggg gccggattgg tgcatccagc
     2401 gcccggcgag gaagtacagg ccaatgccga cgaccccgga caccgtcaac atcgtcgaga
     2461 tctgcacttc aaccatggtc atgctgccca gcagctgcgc gatcaccggg acgccgaaca
     2521 gcgccaaaag cagcgtccgc cacggcacca cagtgtccgc atggtcgtgc cctgccccga
     2581 gatccacctc cggtctgcga atgcggttgg ccgcacgacg gctcgtcatc cacacccgcg
     2641 tgccgcgcag actcaaaaca atccccccca ccaagaactg ggtgtggtag gacagtttct
     2701 tcgttgccat cacaccgagt agcagaccac ccacaatctt gcccaggtcc aggttgagct
     2761 gcagccaggt cagctgcagg gattgggtcg gagcaggcag atcggtgccc aggatgaaag
     2821 tgggagctgc caccatcacc gcggcagcac tgattcccat cacggcgatg gcga
//
LOCUS       DASVXZ010000298         2810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_211836, whole genome shotgun sequence.
ACCESSION   DASVXZ010000298 DASVXZ010000000
VERSION     DASVXZ010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211836"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..629
                     /locus_tag="VF788_06095"
     CDS             201..629
                     /locus_tag="VF788_06095"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEX8933751.1"
                     /translation="MKARIIAEQTEQLSATHTDAVQDRVLARAAGQTPGQLRRGAAGG
                     EPRRSGRGTPPPRGRKRERGVSFWELPDGMAMISACLPAEEAVGVYGVLDEYARATGG
                     ADDDRTLSARRADALVHLVCGSAGYLSTGSRTSGNHDVSI"
     gene            696..980
                     /locus_tag="VF788_06100"
     CDS             696..980
                     /locus_tag="VF788_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933752.1"
                     /translation="MLFGLDRWALVWIIPWLTGLTVISYLGQYGGTKVIPEGVDLGVV
                     AAFSLLICYVAVALRLPAHRVAATIAADQRDTPDQLNATSHTGRPELMGT"
     gene            complement(1000..>2810)
                     /locus_tag="VF788_06105"
     CDS             complement(1000..>2810)
                     /locus_tag="VF788_06105"
                     /inference="COORDINATES: protein motif:HMM:NF025011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-associated domain-containing protein"
                     /protein_id="HEX8933753.1"
                     /translation="LPLLATVIAGLPRSAKDRLGEYRRGYYDRYSARLRAGDRDPTQL
                     LIAAGLLLPVNYGLELPREVAVAGWLAERELTLTGRPEIPVVGADEAVVRRAAQAAAQ
                     EALRGVTTLLDEARATPITALKKGGVGPRERTRLAKRLSIPEDILVLWIDLAYAAGLL
                     GRVDAGYAPTQSYAEWRAAEPARRWAVLVEAWFSLEHAPTSREVQGDKELPPPLPLGS
                     AAGLLRRALLPAAHAGASVWAAGKEIDWFFPLHGYDAGQRTSKVTATIREAELLGVVA
                     SDVLSELGEHLLAVAGSGLEDAVDELARRCTVLLPETPCSVILQSDLTAVISGQPSAL
                     VSGLLNDSAVAETHGAARTWRFTPASVRAALDAGWRAQDLLSELAAVSDRPVPQPLQY
                     LITDAARRHGLVRVRGMRSCVVADEVLITEILHTRSLSKLHFSQLAPTVLSSPSSLDD
                     VLARLRETGLSPVAEDAQGTVIVEARHDHQAPAIKRSIITQSRAALSATELARRLLAD
                     PHGLTGVAPVDSETFELLAQLNCHLDDAELELLSDAVDHHNDVLITYRDKNGSRSTRA
                     IRPHQLYDRWLDSWCHLRNAQRDFTIANIEAVSPVS"
BASE COUNT          476 a          948 c          941 g          445 t
ORIGIN      
        1 ttagggttcg gcctcaagac accgcgtgat cgatcgttgt gacagcgcgt gagacagatc
       61 actccaccgg cgtgggctcg gcacgcggag tcctcacggt cggagctgat gaccgcagga
      121 tcccggttgg atgacgcgct cactctcacc gaacgctacc cggccaccgt ggctgcgatg
      181 gccgccagac ggatcacctt gtgaaggcac ggatcatcgc cgagcagacc gagcaactgt
      241 cggccacaca taccgatgca gtgcaagatc gagtgttggc ccgggccgct gggcagaccc
      301 cggggcagct gcggcggggg gcggcgggtg gtgaaccgcg ccgatccggc cgcggtacac
      361 caccgccacg aggccgcaaa cgggagcgcg gcgtcagttt ctgggaacta cctgacggga
      421 tggcgatgat ctcagcgtgc ctgcccgccg aggaagcggt cggggtctac ggagtgctcg
      481 atgagtacgc ccgggccact ggcggcgcgg acgacgaccg gactctgtcc gcgcgacggg
      541 ccgatgcctt ggtgcacctg gtctgcggat cggcgggcta cctcagcacc ggcagccgca
      601 ccagcggaaa ccacgatgtc tcgatctgag cttcgccgcg tcaggcgtcg ccggtcccgg
      661 tccgggttca ggtacgggtc acggtgcctt tcagcgtgct cttcggactg gaccggtggg
      721 cgctggtctg gatcattccc tggctcaccg gtctgaccgt gatctcctat ctcggacaat
      781 acggcgggac aaaagtcatc cccgagggcg tcgaccttgg cgtggtagcc gcgttcagcc
      841 tcctgatctg ctacgtcgcc gttgcgctcc ggcttcctgc ccaccgagtc gccgccacca
      901 tcgcggcgga tcaacgtgac acacctgacc agctgaacgc cacaagccac accggacgac
      961 ctgagctcat gggtacatga gcccttcgga gaatgccggt cagctcacgg ggctgacggc
     1021 ctcgatgttg gcgatcgtga agtcccgttg tgcgttgcgg agatggcacc acgagtcgag
     1081 ccaccggtca tagagctgat gtggccggat cgcccgggta ctgcggctgc cgttcttgtc
     1141 gcgataggtg atgagcacgt cgttgtggtg atccacggcg tcggacagga gttccagttc
     1201 ggcgtcatcg agatggcagt tgagctgtgc cagcaactcg aatgtctccg agtccacggg
     1261 ggcgaccccg gtcagtccgt ggggatcggc cagcaggcgt cgagccagct ccgtggcaga
     1321 cagcgctgcc cgcgactgag tgatgatcga ccgcttgatt gccggcgcct ggtggtcgtg
     1381 acgggcctcc acgatcaccg tgccctgcgc atcttcggcc accggagaca agcccgtctc
     1441 gcgcaggcgc gccagcacgt catcgagact ggatgggctg gacaacaccg tgggagcgag
     1501 ctggctgaag tgcagcttgc tgagcgatcg ggtgtgcagg atctcggtga tcaagacctc
     1561 gtcggcgacg acgcaggagc gcatgccacg cacgcgaacg agtccgtgtc ggcgagccgc
     1621 gtcggtgatc agatactgca gtggctgcgg aacagggcgg tccgagactg cggccagctc
     1681 ggaaagcagg tcctgagcgc gccagccagc gtcgagcgct gcccgcacgc tggccggagt
     1741 gaatcgccag gttctggccg ccccgtgagt ctcggccacg gccgagtcgt tcaacaggcc
     1801 cgatacgagc gcgctcggct ggccggagat cactgcagtg agatccgact gcaagatcac
     1861 gctgcatggg gtctccggaa gcagcacggt gcaacgccgc gccagctcgt ccaccgcatc
     1921 ctccaggccg gacccggcca ccgccagcaa gtgctctccg agttccgaga gcacatcgga
     1981 cgccaccacc ccgagcagtt ccgcctcgcg gatcgtcgcc gttaccttgc tcgttcgctg
     2041 gccggcgtcg tagccgtgca gcggaaagaa ccagtcgatc tccttgcccg ctgcccacac
     2101 cgaggcgccc gcgtgggcag cgggcagcag agcgcgacgt agcagcccag cggcagaacc
     2161 cagcggcaac ggcggtggaa gctccttgtc tccctggacc tcccggctgg tcggcgcgtg
     2221 ctccaacgag aaccatgcct cgacgagcac ggcccaccgc ctggccggtt ccgcggcgcg
     2281 ccattccgcg taggactggg tgggtgcata cccggcgtcg actctgccca gcagaccggc
     2341 ggcgtacgcc agatcgatcc acaacaccag aatgtcttcg gggatcgaga gccgcttggc
     2401 cagccgagtc cgttcccgag gcccgacacc acctttcttc aaggccgtga tcggcgtcgc
     2461 gcgggcctca tcgagcaggg tcgtcactcc ccgcagtgcc tcctgggcgg cggcctgcgc
     2521 ggcccggcgc accactgcct catcagcacc aacgacgggg atctccggcc gtccggtcaa
     2581 ggtgagctca cgttcggcca gccaaccggc taccgccacc tcccgaggta gctcaagccc
     2641 ataattgacg ggcaggagca gtccagccgc gatcagcagt tgggtgggat cccgatcgcc
     2701 ggcgcgcagc cgggccgagt agcggtcgta gtagccacgc cggtactcgc cgagccgatc
     2761 cttggccgat cgcggcagcc cagcgatcac tgtggccagc aaaggcagat
//
LOCUS       DASVXZ010000299         4432 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_554010, whole genome shotgun sequence.
ACCESSION   DASVXZ010000299 DASVXZ010000000
VERSION     DASVXZ010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4432
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554010"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..754)
                     /locus_tag="VF788_06110"
     CDS             complement(107..754)
                     /locus_tag="VF788_06110"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8933754.1"
                     /translation="MSDSPGLDPDLFDLSSMRVALAERDITKVYKILTRQGVPQRSIA
                     ALTGQSQSEVSEILSGRQVMGYDVLVRIANGLGIPRGMMGLAYDGDSTEPAAEEVDED
                     VERRNFLAIAGAIIFGTPVFGDPRPLTLRDVALQPPARVGPSDVVAFEQTVARLDVLD
                     REAGGMAAREALAATAKTGETLLSAQASPDVHQQLRYAVSEAHRLAGWASACWPG"
     gene            complement(936..2612)
                     /locus_tag="VF788_06115"
     CDS             complement(936..2612)
                     /locus_tag="VF788_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acyl-AMP ligase"
                     /protein_id="HEX8933755.1"
                     /translation="MSRFLDTLVAHCAPHSPVRSDRGITTGEPDQPRRSSWTEVHEQA
                     LRAAGTLIGTAAPGVQHGDAVAVLAGDPALIAPAVQAVWLAGGSVTMLHQPTPRADLA
                     SWAADTVRVLGMIDAKLVLLGAPFDQLAPVLDQRGISYLMLADLDDPAVRPLAAPVPV
                     DEDDTALLQLTSGSSAEPKAVRITHGNLYANMTAMAQSAALDPATDVMVSWLPLFHDM
                     GMVGFLTIPMALGLELVKVTPADFISRPLLWADLISRHGGTITAAPNFGYALLARRLA
                     NTDEHFDLSSLRFSLNGAEPIEPAAVRAFTAAGARFGLPETCMVCAYGMAETTLGVSF
                     APWGVGMQVDTVDADALETRRRAVVADPSEPQVRAFPRLGPPLPGMQVQVVAEDGRRL
                     GEREVGRIQLRGESVTREYLTTAGPLATQDADGWLDTGDEGYLAEGDVVVCGRRKDVI
                     IMGGRNIYPIDIERAAQQVDGVRPGNVAAVRIDADGRRESFAVAVESMQAGDAEAERT
                     LRKDVAARVVDAIGLRPGAVVVLPPTSLPKTPSGKLRRAAVRDRIAGYLP"
     gene            complement(2662..4422)
                     /locus_tag="VF788_06120"
     CDS             complement(2662..4422)
                     /locus_tag="VF788_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEX8933756.1"
                     /translation="MANLVNLEAVSKSYGVRPLLAGVSLGIDAGDRIGVVGLNGGGKT
                     TLLEVLAGLQPPDAGRVSHARGLRAAVLTQRTELPAGATVGHAVLSGLGVSAEHEWAA
                     DPRVRGVLDGLGIQALGLDRPVAGLSGGERRRVALAAALVGELDLVMLDEPTNHLDVE
                     GVQWLAEHLVARRCAVVVVTHDRWFLDTVCTRTWEVTDGRVDGYDGGYADWVYARAER
                     LRLAAAADDRRRNLARKELAWLRRGPPARSSKPRYRIEAAEALISDVPPPRDTVELLA
                     FARRRLGRTVLELEDVTVTIGGRRLLDAETWRIGPGERIGLVGVNGSGKTTLLRLLAG
                     ELEPDAGRRVQGQTVRLAHLTQELADLPESLRVLEAVQEVANRIVFGRHEMSASQLAE
                     RLGFPPARQWTPVAELSGGERRRLQLTRLLMAEPNVLLLDEPTNDLDIDTLQQLEDLL
                     DGWPGSMVVVSHDRYLVERVCDTVVALLGDGRITHLPGGIEEYLTRRQPAPAPLPAPP
                     ATGGSTPAADQRAARKELARLERQLERLAGREAELQEQILQRAADPGAFRELDSELRT
                     VLAAKDDLETRWLHVADAVG"
BASE COUNT          736 a         1585 c         1468 g          643 t
ORIGIN      
        1 aagggctgcg aatctgcagg attcgcgtct gcgaacagct cccgggaccg agccacctgg
       61 cgtctcgcca cgtcagcatg tcccacgctg aggtacgcgg aggcactcag cccggccaac
      121 acgcggacgc ccacccggcc agccgatgcg cctccgagac cgcgtagcgg agctgctgat
      181 ggacgtcagg actggcctgg gcagacaaca gcgtctcccc cgtcttggcc gtcgctgcca
      241 acgcctcgcg agcagccatc ccgccagcct cacggtccag cacatcgagt cttgccaccg
      301 tctgctcgaa tgcgacgacg tcagatgggc cgacccgggc agggggttgc aaagccacat
      361 cccgcaacgt cagggggcga gggtcgccga agaccggcgt gccgaagatg atcgctccag
      421 cgatagctag gaagttgcgc ctctccacgt cctcatccac ctcctctgcg gcaggttcgg
      481 tggagtcacc atcgtacgca agacccatca tcccgcgagg gatacctaac ccgttcgcga
      541 tccgcaccag cacgtcgtag cccatgacct ggcgaccgga caggatctcc gagacctcac
      601 tctgcgactg acccgtgagc gctgcgatcg agcgctgcgg gacgccctgc cgcgtgagga
      661 tcttgtagac cttggtgatg tcacgctcag cgagagcgac tcgcatgctg gacagatcga
      721 acagatcagg gtccagaccc ggcgaatcag acatgggaga gagcgtagct cgtcagttga
      781 tcacgtaatc gctgtggctg tgtaaatagc caaccggcgc gctgcaggat cacatatctt
      841 tccacggcag tcccctgccc ttgcgcagcg aagcaccatt cttcgcggca ggcagcagag
      901 tccgactgcg gcaatccggc gacgcttccg aacggttagg gcaggtaacc ggctatgcgg
      961 tcgcgaactg cggcgcggcg gagcttgcct gagggcgtct tgggtaagga ggtcgggggc
     1021 agaaccacga cagcccccgg ccggaggccg atcgcatcga ccacccgtgc ggcgacatcc
     1081 ttgcgcaggg tgcgctccgc ctcagcgtct ccggcttgca tggactccac tgctaccgcg
     1141 aaggactctc gccgcccgtc ggcgtcgata cggaccgccg ccacgttgcc cggccgaaca
     1201 ccgtccacct gctgcgcggc gcgctcgata tcgatgggat agatattgcg cccgcccatg
     1261 atgatgacgt ctttgcgccg tccgcagacc accacgtcac cctcagcgag ataaccctca
     1321 tcgccggtgt ccaaccaccc atcggcatcc tgagtcgcca ggggccccgc ggtggtcagg
     1381 tactccctgg tcaccgactc gccgcgcagc tggatccggc cgacttctcg ctcccccagc
     1441 cggcgaccgt cctcggcgac cacctgcacc tgcatgcccg gcaacggcgg tcccagccgg
     1501 ggaaaggctc gcacctgggg ctcagacggg tcggccacga cggcccggcg ccgggtctcc
     1561 agggcgtcgg cgtccacggt gtccacctgc atgcccacac cccacggcgc gaaggagacc
     1621 ccgagcgtgg tctcggccat cccgtaggcg cacaccatgc aggtctccgg caacccgaaa
     1681 cgggctccgg ccgcggtgaa ggcccgcacc gcggccggtt cgatcggctc agcaccgttg
     1741 agcgagaagc gcaggctgga caggtcgaaa tgctcatcgg tgttggccag ccggcgagcc
     1801 aacagggcgt agccgaagtt cggcgccgcg gtgatggtac cgccgtgcct gctgatcaga
     1861 tccgcccaca gcagcggacg ggagatgaaa tccgctggag tgaccttgac cagctccagc
     1921 cccagcgcca tcgggatggt gaggaacccg accatcccca tgtcgtggaa cagcggcaac
     1981 caggacacca tcacgtcggt ggccggatcc agggccgccg actgcgccat cgcggtcatg
     2041 ttggcgtaga gattgccgtg ggtgatccgg acggccttag gttcagcact cgagccggag
     2101 gtgagctgca gcagagcggt gtcgtcctcg tccaccggca ccggcgcggc gagtggccgg
     2161 acggcgggat catcgaggtc ggcgagcatc aagtagctga tcccgcgttg atccagcacc
     2221 ggagcgagct ggtcgaaggg cgcaccgagc aacaccagct tcgcgtcgat catgcccagc
     2281 acccggacgg tgtcggctgc ccagctggcc agatcggcac gaggagtggg ttggtgcagc
     2341 atggtcacgc tcccaccagc aagccagacc gcttgcacgg cgggcgcgat cagcgcgggg
     2401 tcgccggcga gcaccgcgac cgcgtcaccg tgctggacac caggcgcggc ggtgccgatc
     2461 agggtcccgg cggcccggag agcctgctcg tggacctcgg tccacgagct gcgacgcggc
     2521 tggtcgggtt caccggtggt gatgccccgg tccgaccgaa ccggggaatg cggcgcgcag
     2581 tgggccacga gggtgtcgag gaacctgctc acaattggcc accttaaggc tgcaatgcgg
     2641 gaacgcgctc gtcgatggcc gttaaccgac ggcgtcggcg acgtgcagcc agcgcgtctc
     2701 cagatcatcc ttcgcagcga gtaccgtgcg cagttcgctg tccagctccc ggaacgcgcc
     2761 gggatccgcg gcccgctgga ggatctgctc ctgcagttcg gcttcccggc cggctaggcg
     2821 ctcgagctga cgttccaggc gggccaactc cttgcgggca gcccgctggt cggcggcggg
     2881 ggtcgacccc ccggttgctg gtggggccgg gagcggcgca ggcgctggct ggcgtctggt
     2941 cagatactcc tcgatgccgc cgggcaggtg agtgatccgc ccgtcaccga gcagcgccac
     3001 cacggtgtcg cagacccgtt cgaccaggta gcgatcgtgc gacacgacga ccatggagcc
     3061 tggccagccg tcgagcagat cctccagctg ctgcagggtg tcgatgtcca gatcgttggt
     3121 gggctcatcg agcagcagta cgttcggctc ggccatcaac agccgggtca gctgcagccg
     3181 gcgccgctct ccaccggaga gctccgccac cggtgtccac tgccgcgccg gtgggaagcc
     3241 gaggcgttca gcaagctgcg aggcggacat ttcgtgacga ccgaacacga tccggttggc
     3301 gacctcctgc accgcctcca gcacgcgcaa ggactccggt agatcggcca gttcctgggt
     3361 caggtgcgcc aggcgcactg tctgaccctg cacccgacgg cccgcatccg gctccagctc
     3421 tcccgcgagc agccgcagca gcgtggtctt gcccgatccg ttgaccccga ccagcccgat
     3481 gcgctcaccg ggcccgatcc gccacgtctc ggcgtcgagc agccggcggc cgccgatcgt
     3541 caccgtgacg tcctcgagct ccagcacggt acggcccagc cggcgtcggg cgaaggcgag
     3601 cagctcgacg gtatcccgcg gtgggggcac gtcgctgatc agcgcctcgg cggcctcgat
     3661 gcggtagcgc ggcttggagc tgcgcgcggg tgggccccgg cgaagccagg cgagttcctt
     3721 acgggccaga ttgcgccgcc gatcatcggc ggccgcggcg aggcggagcc gttcagccct
     3781 ggcgtagacc cagtccgcgt agccgccgtc gtagccatcc acccggccgt cggtgacctc
     3841 ccaggtccgg gtgcacacgg tgtccaggaa ccaccggtcg tgggtcacca ctaccaccgc
     3901 gcaacggcga gcgaccaggt gctcggcgag ccactgcaca ccctcgacgt ccaggtggtt
     3961 ggtcggctcg tcgagcatca ccagatccag ctcgcctacc agtgcggcgg ccagcgcgac
     4021 ccggcgccgt tccccaccgg acagaccggc caccggccgg tccaggccca acgcctggat
     4081 acccagccca tcgagcactc cgcgcacccg ggggtcggcg gcccactcat gctcggcgct
     4141 cactcccagc ccagagagca ccgcgtgacc aacggtggcc cccgcaggca gctcggtgcg
     4201 ctgggtgagc accgcggccc gcagtcctct ggcgtggctc acccggcccg catccggcgg
     4261 ctggagaccg gcgagcacct ccagcagggt ggtcttgcca cccccgttga ggcccacgac
     4321 accgatccga tcgcccgcgt cgatgccaag cgacacaccg gcgagcaacg ggcggacccc
     4381 ataggacttc gagaccgcct ccaggttgac caggttggcc atcaggcgcg cg
//
LOCUS       DASVXZ010000300         6553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_391167, whole genome shotgun sequence.
ACCESSION   DASVXZ010000300 DASVXZ010000000
VERSION     DASVXZ010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6553
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391167"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VF788_06125"
     CDS             <1..200
                     /locus_tag="VF788_06125"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8933757.1"
                     /translation="LDGVEFLGSAGLSALFEANELAARERRALRLVCHSRIANRALEA
                     TELRDHFTFADTVPDALQNSP"
     gene            377..850
                     /locus_tag="VF788_06130"
     CDS             377..850
                     /locus_tag="VF788_06130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8933758.1"
                     /translation="MTYVDKDYSSSNGGAPPQGTFHAGVALSLELRAAASTVVIPTIR
                     TVAADLAARADFDLDSIDDLRMAVDDLCAMLVRIAAAGATLRCRFTVSPERIEVAADI
                     EVEDPTEPLSTRTFGWRVLECLADDVRAMSLPGAVGERDRFCITVAKDAATAPQL"
     gene            859..1638
                     /locus_tag="VF788_06135"
     CDS             859..1638
                     /locus_tag="VF788_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018687213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigB/SigF/SigG family RNA polymerase sigma
                     factor"
                     /protein_id="HEX8933759.1"
                     /translation="MSSVGTEHNEYAHLVPLQRRYAELAENDPERQALREQLISGYLP
                     VAEHIARRFAGRGEPIEDLVQVATVGLINAIDRFEPIRGSDFFSFAVPTITGEVRRYF
                     RDHGWSTRVPRRLKDLHIAIRGTLAELSQQLGRAPRPSEIADRLGLPISEVIEGLQAG
                     EAYRSSSLDEMLGSGDGKATLGEFIGGLDNELALIDDRATLRPLLAELAPREQKIIEL
                     RFFRQLTQTQIAEQVGISQMHVSRVLRQTLAVLQERMAGRD"
     gene            1817..2242
                     /locus_tag="VF788_06140"
     CDS             1817..2242
                     /locus_tag="VF788_06140"
                     /inference="COORDINATES: protein motif:HMM:NF021536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2267 domain-containing protein"
                     /protein_id="HEX8933760.1"
                     /translation="MDPEHRSASGNSRRSVLALIAEQENQMRDEEFITEVQARADLAA
                     RGDVERAIWATLTVLGEQLPDNVVGPVAAALPERLGEQLWGGRPRSRVTAAQAGRLSR
                     GVAQGEASWPGDNTVADADIDSLSPQRGRHEPAGVDTSP"
     gene            3521..3706
                     /locus_tag="VF788_06145"
     CDS             3521..3706
                     /locus_tag="VF788_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8933761.1"
                     /translation="MSLQDKIANKAQVLKGKVKETAGKITRDPELEGEGKLEQGTGHI
                     KQAGEKVKDAGKSVFDS"
     gene            complement(3781..4164)
                     /locus_tag="VF788_06150"
     CDS             complement(3781..4164)
                     /locus_tag="VF788_06150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933762.1"
                     /translation="MPASAAARAYLITSGQFADIVAQEMHRTPGEDLDLATVLAKRRV
                     KLGPGRYETLLHVDDLDGYPLLTFTAPWRAADVSWAPPSASYLRVIMAGLRETHGWDN
                     HRIAHYLARLPGARGYWTPAGIAAL"
     gene            4941..5759
                     /locus_tag="VF788_06155"
     CDS             4941..5759
                     /locus_tag="VF788_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEX8933763.1"
                     /translation="MTDVASRASLESLLMSRSLSDPELMAASGMAPDYAILPNVNVIK
                     IGGQSLIDRGRAAVYPVVEELAAVKRSHQVLIGTGAGTRARHVYALAAELGLPTGVLT
                     DVGSAVADQNAQILGYLMARHGVPVVGGSAFGAIPLYLAECGAAIFSGMPPYDMWQRV
                     PSEGVIPPYRTDAGCYLVAEVYGCANMIFVKDEDGLYTANPKTDSSAKLIPEITVEEL
                     IAADLPDLIIERPVLELMRRARHVKSIQVINGLRPGLIRRALAGEHVGTIISAA"
     gene            5786..>6553
                     /locus_tag="VF788_06160"
     CDS             5786..>6553
                     /locus_tag="VF788_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum storage protein subunit alpha"
                     /protein_id="HEX8933764.1"
                     /translation="MTDTLSDSTSSFAAKDVPSALMRQTLLDRELVRPLDRPVIPLLP
                     WLSVVVIGGRSIMDRGRDAVAPVVEELRAALPEHRLLILTGPGIRGRHVLGVGLDLGL
                     PTGVLAALASSEAEQNGHLVAALLAEHGVSYLPHEAIAHQLAVHLTASRAVVSNGYPP
                     YGIYEFPPDVGKIPPHRTDTGAFLLADAYGAARIMYVKDVDGVFTSDPADVNGSRPEL
                     IRRVGAAELLARNLETLPIDPLVLELMAHAKHQKEIQI"
BASE COUNT         1154 a         1996 c         2204 g         1199 t
ORIGIN      
        1 acctcgacgg tgtcgagttc ctgggatccg ccgggctgtc cgcgctattc gaggccaacg
       61 agctggcggc ccgcgagcgg cgcgccctgc ggttggtgtg ccattccaga atcgccaacc
      121 gagcgctgga ggcgaccgag ctgcgggatc acttcacctt cgccgacacg gtgccggatg
      181 ccctgcagaa ttcgccttga gcccgcttcg gaggcctgaa caacggggtt tgacacagac
      241 ggagctcggg aacaccccgg gcatgaacgg gtccgccgca acatagcgta actgggaaat
      301 ataaggagac gacgatggcc gctggagccc tgagcgtcgc ggcacacggc gccatcacgg
      361 atgcgggacg atcaaggtga cgtacgtgga caaggactac tcgagttcca atggtggcgc
      421 tccaccgcaa ggcaccttcc atgcgggtgt cgccttgtcc ctggagctgc gggccgcggc
      481 cagcaccgtc gtgatcccca ctatccgtac ggtcgccgcc gacctggccg cccgcgccga
      541 tttcgatctc gactcgatcg atgatctgcg gatggcagtc gacgatctgt gcgccatgct
      601 ggtccggatc gccgctgctg gcgcgacgtt gcggtgcagg ttcaccgtat cgcccgagcg
      661 gatcgaggtg gcggcggaca tcgaggtcga ggatccgacc gagccgctgt ccacccgcac
      721 gttcggctgg cgtgtgctgg aatgtctcgc cgatgacgtc cgtgctatgt cgctgcctgg
      781 tgcggtcggc gagcgtgacc ggttttgcat caccgtggcc aaagacgccg cgacggcgcc
      841 acagttgtga cgccgtccgt gtcgtcggtc gggaccgaac acaacgagta cgcgcatctt
      901 gttccgctgc agcgccggta tgccgagctg gctgaaaacg acccggaacg gcaggcgttg
      961 cgcgagcagc tgatcagcgg ttatctgccg gtggccgaac acatcgcgcg ccggttcgcc
     1021 ggccgcggcg agcccattga ggacctggtc caggttgcca ccgtggggtt gatcaatgcc
     1081 atcgaccgct tcgaacccat ccgcggctct gacttcttct ccttcgcggt gccgacgatc
     1141 accggtgagg tacgtcgata tttccgggat cacggctggt cgacgcgggt gccgcggcgg
     1201 ctgaaagacc ttcacatcgc tatccggggc acgctggctg aactgtccca gcagctcgga
     1261 cgggctcccc gacccagtga gatcgctgat cgcctgggac tgccgatctc tgaggtcatt
     1321 gaaggcctgc aggccgggga ggcgtaccgg agctcgtcgc tggatgagat gctcggttcc
     1381 ggtgacggca aggccactct aggcgagttc atcggtggac tggataacga gctggctctc
     1441 atcgacgatc gggcaacgct gcgccccctg ctggcggaac tggcgcctcg tgagcagaag
     1501 atcatcgagc tgcggttctt ccggcaactg acgcagaccc agatcgccga acaggtcggc
     1561 atctcgcaaa tgcacgtctc gcgagtactc cgtcaaacgt tggcggtatt gcaggagcgc
     1621 atggccggcc gcgattgacc cgccgcgaac ccgtcgggtc cagtgatcac cagctaaccg
     1681 tgtcccgatt gccgtttcgt cgcgcgagtg ccgggtaccc ttggggtatg acggcttccg
     1741 ccacgccagc tgacgtggtc acggtcccca cctagccggt tcaatagacg ctaccgcggg
     1801 ctcgcagctg ccgtccgtgg atcctgagca ccggtcggcc agcggaaatt cgcgccgatc
     1861 ggtgctcgcc ctcatagcgg agcaggagaa tcagatgcgc gacgaggagt tcatcaccga
     1921 ggtgcaggct cgcgctgact tggccgctcg gggtgatgtc gaacgcgcca tctgggccac
     1981 cctgaccgtt cttggtgagc aattgccgga caacgtggtt ggccccgttg ccgctgcgct
     2041 cccggagcga ctcggggaac aactgtgggg cgggagaccc cgatcgcgcg tgactgcggc
     2101 acaggccggt cggctgagtc ggggagtagc tcagggtgag gcgagctggc ctggggacaa
     2161 caccgtcgcc gacgctgata tcgatagtct ttctccccag cgtggccggc acgagccagc
     2221 cggtgtggac acttccccgt gatctagctg atcgagccgc cggtaactac cgtgtcacct
     2281 ggcgcttgat cgggaggtct ggctggagcc gaccgacccg gtgtgtgggc gagattcgat
     2341 cccgagccgg gcgttgagcg caggggtgag aggggcaacc cgtcagcgcc atcgcttcga
     2401 cggcggtgcg caccgggaac ggtcaaggta acaggatcgc gctgatgagc gggatcgtaa
     2461 gcagcatcct ggtgatctga cacagcggga ttggccgact ctgcagaatc cgatgttccg
     2521 tgctcgattg gcgcgtcatg gtcaccgggc ccgctgtcga ccagcagagt atgcgcgtca
     2581 cttgatgtgc cggtgtcacc ggagtttcca gaatcggtgg gtttgccggc agcaaccgtc
     2641 tcaacctgag ccaccggctt accggagtta ctcggcttat cgatgtggcg ggaggagatc
     2701 gcggccaccg gagcgggggt cggggtgggg cttacgttcc ccggtggact gctgaggtga
     2761 cgaccagtcg ctggttcaac aattttcgct gcggggggga ccgtaatcga gggggagccg
     2821 gcccgctcca cgagcatggg tgctatgtca gccgggaccg gagacacctc tgatcccttc
     2881 gtcggaaggg ccagggatgc ctctgggttg tgggtcggtg cgccgccctg accgaacaag
     2941 ggtggcgtag cgatcttgtg ctgcgcggtg gcgcgcccgt ggctgatgat tgcgttaatg
     3001 ccaagggcag cggtgcaagt cagcgcgaag caggtgacta cggctgccgc ggccgagcgg
     3061 gtactcgaag gcatcggcaa cgccatccag cgtcgataac tggccgtagc agccgcatcg
     3121 cgcagatagg tgtcagtgcc gatccaggca atcagcgcat tggccggagg gccagaaccc
     3181 gccttccgac gatggcgggg tatcgatctg tgcactgtag gtctccgagt gcgttagccc
     3241 cacctcgtct ccctggatac gccgcttcgg ctgcgagacg gcagcgctgt tcttgcggcc
     3301 gaatgaactc tgggcgctgc ctgtagtgat tggaacccct gacctctctt cgtcggccgg
     3361 tcgcccaggc cgccaggtca tcctcgcgga gaggctccga cgcggctggt gccgagtatc
     3421 cacgctgctc gtcagccggc aggtttcggc gagatcccgc cggggtaacc cggcgccacg
     3481 tgacgcgccc ggactggcgc aaatggaaag gtggttggtg atgagtttgc aggacaagat
     3541 cgcgaataag gcccaggtgc tgaaaggcaa agtcaaggaa acagcgggca agatcacccg
     3601 cgacccggag ttggaaggcg agggcaagct ggagcagggc acgggacaca tcaagcaggc
     3661 cggcgagaag gtcaaagacg cgggtaagag cgtttttgac tcctaagcag tgtggaactc
     3721 ggcgacaatg cgcaggctcg ggtgagccgc gagctcgacg cgttcaccac gtttgggggt
     3781 ttacaacgcg gcgatacccg ccggagtcca gtagcctcgt gctcccggca agcgggcgag
     3841 ataatgggcg attcggtggt tatcccatcc atgggtctcc cgcaagccgg ccatgattac
     3901 ccgcaaatag gatgcggaag gcggcgccca cgacacgtct gctgcacgcc agggagcggt
     3961 gaaggtgagc aacggatatc cgtcgaggtc atcgacatgc agcagggttt cgtagcggcc
     4021 agggcccagc ttgacccggc gcttcgccag gaccgtcgcg agatcgaggt cttcgcccgg
     4081 ggtccggtgc atctcctgcg cgacgatatc ggcgaattgc ccggaagtga tcaagtaggc
     4141 gcgcgcggct gctgaggctg gcaattcagg atcgtagaag gctcgtccac caccccaagc
     4201 cgcggactcg gtggcgaagt agacgcttcc ggcaagcttg tatccgatcg ctcgtagcgg
     4261 cgctcgatga tcgcgacaac ctgggtacgc cagccgtgcg cctgatggtg cgccacccga
     4321 gagataacag gtaaatcgat caatacacat gtttgaccca tagcacgcat accacaccag
     4381 caacggttgg tctgttgact tacacttctc tggcgcgccc ctgttggcac tctccgcacg
     4441 acctttggcg cgcagcaagt tgcgggggtc cttggtggtc atcgcccggt aagtctaggt
     4501 atgtgacacc gccaagcaaa tgactcgggt aaagctgcga cagaactggc cggctccacg
     4561 ggcgggctgc tggggctccg tcccggatgt gcccggtgtg ggcgcgagag gatcgcccaa
     4621 gcgtagtcag tacatccagc ccgaaaatga tgatcggaca tactgtggtt cggcgcggcg
     4681 tcgtggtccc gaaagggata tatggcgccg cccgccagat ttccgggtac acgaacgtgg
     4741 ctaagtccac ccttctggct tatagggccg ctggggcggg tgttctcatg tcccgttcat
     4801 cgcccgtgcg gtgaatgcgc atcctcggtc tccgcacttt cgggaggact gatgtgcatc
     4861 gggcctcgcg gccgacgttc cggaggtcta tggtcgatca tcagtgcata gattcgacaa
     4921 cgtggcgtgg ggatgatcag atgacggatg tcgcgagtag ggcctcgttg gaatcattgc
     4981 taatgagccg atcgctcagc gatccggagc tgatggcggc gagcggaatg gcacccgatt
     5041 acgccattct tcccaacgtg aacgtgatca aaatcggtgg tcagagcttg atcgaccggg
     5101 gtagggcggc ggtctatcca gtggttgagg aattggcggc ggtcaagcga agtcatcagg
     5161 ttctcatcgg tacgggggct ggaacccggg ctcgacatgt gtatgccttg gctgccgagc
     5221 ttgggttacc gacgggtgtg ctaaccgatg tcggatccgc ggttgcggat cagaacgccc
     5281 aaatactggg gtatttgatg gcccgtcatg gagtaccggt ggtcggcggc tccgcgttcg
     5341 gggcgattcc gctgtacctc gccgaatgcg gcgccgcgat cttctcggga atgcctccat
     5401 acgacatgtg gcagcgcgtt cccagcgagg gagtcatccc gccctaccgt acggacgccg
     5461 ggtgttatct cgtggcagaa gtttatggtt gcgccaacat gatattcgtc aaggacgagg
     5521 acgggctcta tacagccaat ccaaagaccg actcgagcgc caagctgatc ccggagatca
     5581 ccgtcgaaga gttgatcgcc gccgatctgc ccgatctcat catcgagcgg ccggtcctgg
     5641 agctcatgcg tcgtgcccgg cacgtgaagt cgatccaggt catcaatggg ttacggccgg
     5701 gactgatcag gcgggcgctc gccggcgagc acgtcggcac gatcatctct gcggcgtgag
     5761 cgccgctgtc accgaggaga aggccatgac agataccctt tcggattcca cgtcctcctt
     5821 cgcggccaaa gacgtgccct cggcgttgat gcgccagacc ttgctcgacc gggaacttgt
     5881 ccggccactg gatcgcccgg tgatcccgct gctgccgtgg ctcagcgtgg tcgtgatcgg
     5941 gggccgctcg atcatggaca gaggccgtga cgcggtagct ccagtcgtgg aggagctgcg
     6001 tgcggcgttg ccggagcatc ggttgttgat cctcaccggt cccggcatcc ggggccgtca
     6061 cgtgctgggt gtcgggctcg atctcggtct ccccaccggg gtgctggccg cgttggcctc
     6121 ctccgaagca gagcagaacg ggcacctcgt tgcggcgctg ctcgccgagc acggcgtgtc
     6181 gtacctgccg cacgaggcga tcgcgcacca gcttgctgtg cacctgaccg caagccgcgc
     6241 cgtggtgtcc aacggatacc ccccttacgg gatctatgag ttccctcctg atgtgggcaa
     6301 gatcccaccg caccgcacgg acaccggtgc attcctcctc gccgacgcct acggcgccgc
     6361 gaggatcatg tacgtcaagg acgtcgacgg cgtgttcacg agcgatccgg cggatgtcaa
     6421 cgggagccga cccgaactca tccggcgggt aggggccgcg gagttgctgg cccgcaatct
     6481 cgagactctc cccatcgacc cgctagtgct cgagctgatg gcacacgcca agcatcagaa
     6541 ggagatccag atc
//
LOCUS       DASVXZ010000301         1726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1629649, whole genome shotgun sequence.
ACCESSION   DASVXZ010000301 DASVXZ010000000
VERSION     DASVXZ010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1629649"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(259..>1726)
                     /locus_tag="VF788_06165"
     CDS             complement(259..>1726)
                     /locus_tag="VF788_06165"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HEX8933765.1"
                     /translation="TNHERATAGLWSWAGGHAMPHYHVTIHGADRAAMADLVRSHDVT
                     VLRQTLAEHDDGYTVSAIADQATIDRLGTVGYQVERHEDVDDTAVASFAEVGPDNRFR
                     DQADGGSTYLNVEEVETALALAAGPAHADFTELITLPQLTWDGRTCTAIRVHQGGQAS
                     TGGVYFLGGIHAREWGSPDICINFVRLLTNAYQAGIGISQGGTSFSAADIRAIVERLD
                     IIVFPQANPDGRHHSMTADHMWRKNRRPAAAGEHVCTSGGGNGSGVDVNRNYDFLWDF
                     PVKFSPSAAVATSTNPCKETYRGPSAASEPETRNVEWLLRNSPNVGYFIDIHSFGEDI
                     LYNWGDDDDQTSDPTMNFHNPVYDGKRGILDSDPGGDSKKYREYLPKADLDTLIALGN
                     TMRDAIKATHGRVYTVKSSANLYPTSGTSDDFAYSQGFLNGSKRRVLGFTIEWGPERS
                     TIPESFHPNYVDMVPIIEEVTAGLLAFCLACVNQAPAA"
BASE COUNT          319 a          528 c          508 g          371 t
ORIGIN      
        1 ttcaccagga gccgcgcggg gagaaccttc ggcgtacaga tgccggtgag cgcctgacca
       61 ttatcatagt taccattcgg atgatcatcg cttccagcca cgtcgttcgc catcttggcg
      121 atcattgcga gtgtctcgcg caaccgttcc tcattgctta ccatcatcac tcctttagcg
      181 ttcattaact gatacagagc cgcacgctat ccatcgcgag catgattgat ccgctcgcgg
      241 cccggcccca cttccccgtc aagcggcagg cgcctgattg acacacgcca ggcagaacgc
      301 cagcaggccg gccgtgacct cctcgatgat cggcaccatg tcgacgtagt tcgggtgaaa
      361 actctcaggg atggtcgaac gttctggacc ccactcgatc gtgaaaccga gcactctgcg
      421 cttgctcccg ttaagaaagc cttgcgaata tgcaaagtcg tccgaggtgc cggaagtcgg
      481 gtagagattc gcggatgact tcaccgtata gacccggccg tgggtggcct taatcgcatc
      541 gcgcatcgta ttgcccagcg cgatcaaggt gtcgagatcg gcttttggaa ggtactcacg
      601 gtactttttt gaatcaccgc ccggatcgct gtccaggatc ccacgcttac catcgtagac
      661 tgggttgtgg aagttcatcg tggggtcgct ggtctggtcg tcgtcgtcac cccagttgta
      721 gaggatgtcc tcgccgaatg agtggatatc gatgaagtaa ccgacattcg gggaatttct
      781 cagcaaccac tcgacattgc gggtctccgg ctcggatgcc gcgctcggac cacgataggt
      841 ctccttgcac ggattggtcg aggtagccac cgccgctgat gggctgaact tcactgggaa
      901 atcccacaag aagtcgtaat ttcggttgac atcgacgccg gagccgttgc ccccgccgct
      961 tgtgcagacg tgctcccctg ctgccgctgg acgacggttc ttgcgccaca tatggtccgc
     1021 cgtcatcgag tggtgccgcc cgtctggatt ggcctgcgga aagacgatga tatccaggcg
     1081 ctctacgatc gcgcggatgt cggcagcgct gaatgacgtt ccgccctggc tgatgccgat
     1141 cccggcctgg taagcattgg tgagaagccg tacgaaattg atgcagatgt ctgggctacc
     1201 ccactcccgg gcgtgaattc cacctaagaa atacacgccg ccagtgcttg cctgccctcc
     1261 ctggtggact cggatcgcgg tgcaggtccg gccgtcccag gtcaattgcg ggagggtgat
     1321 caactcagtg aaatcagcat gggctggacc ggcagcgaga gcaagcgcgg tctcgacctc
     1381 ctcgacgttg aggtaagttg acccaccatc ggcctggtca cggaatcggt tgtccggacc
     1441 aacctcggcg aaactggcca cggccgtgtc gtcgacatct tcgtgccgct cgacctggta
     1501 accaacagtg cccaaccggt cgatcgtggc ctggtcggcg atcgcgctga ccgtgtagcc
     1561 gtcgtcgtgc tcggcaagcg tttgccgcag cacggtgacg tcgtgtgatc ggaccaggtc
     1621 ggccatcgcc gctcggtcgg ccccgtgaat tgtgacgtgg tagtgcggca tcgcatgccc
     1681 tccagcccag gaccagagtc ccgctgttgc tctctcgtga tttgtc
//
LOCUS       DASVXZ010000302         1992 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_659495, whole genome shotgun sequence.
ACCESSION   DASVXZ010000302 DASVXZ010000000
VERSION     DASVXZ010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659495"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(227..1030)
                     /locus_tag="VF788_06170"
     CDS             complement(227..1030)
                     /locus_tag="VF788_06170"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEX8933766.1"
                     /translation="MGTNPRQLQFEFSLWTREIVREVIRREFGVALSAVSVGRLLRTL
                     GLSPQRPLSRAYQQDPDAVERWKAQEYPAIRAEANRLGATIYFAEEASVRSDYHAETT
                     WAPLGQTPVVATTGARLSVNMISAVTASGSFKYDIVPGRLNAAKFIDFCDKLLADTPG
                     PVFLIVEGHPVHRSNAVKEYVATTNGRLRLFRLPSYSPELNPDEGVWKTSNTTPSAAA
                     PPPVSTTSLPPSSLHLSDSPSYLNSSEHSSATPTSITSPPEQSTYLRSP"
     gene            complement(1033..1281)
                     /locus_tag="VF788_06175"
     CDS             complement(1033..1281)
                     /locus_tag="VF788_06175"
                     /inference="COORDINATES: protein motif:HMM:NF024940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933767.1"
                     /translation="MRENDGRKLDHQTLEAIRIRAVKQIQAGAHPEDVAQSLGMDRST
                     VFAWMAKFREGGLEALRAKPVPGRPPNYPGRSCGSCTR"
     gene            complement(1440..>1992)
                     /locus_tag="VF788_06180"
     CDS             complement(1440..>1992)
                     /locus_tag="VF788_06180"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEX8933768.1"
                     /translation="SSNGKYSLIMQGDGNLVLYTESNTPVWATKTQGKGAVRASLQDD
                     GNLVLYTKEVERRFHRDVPVAVWASHTSGENVRLILQDDRNLVIYTADGRALWASGTA
                     LAGGAEAPAAPTQAPAAPAAAPAAPIEAPAKRIYTVVSGDTLWAIAERFYGDGSEYPK
                     ITSANGIANPDLIMVGQNLTIPE"
BASE COUNT          369 a          593 c          625 g          405 t
ORIGIN      
        1 tcgctgtcat acggccgctt ggagatcatc gcccacagcg gtcacctacc gcacgtggag
       61 aggccagaaa agttcatggc tgcgctatcg ggctttttgg cgggattgca aagttgaacg
      121 cggtttctgt gactccgaac tacgtcgtcg caaacggtga cgcactccag aaggtgagtc
      181 atctgcgacc taatctaacc ctgcgacagg gcgtcctagc tagttactaa ggagaacgta
      241 agtatgtaga ctgctcaggc ggtgatgtaa tagaggtggg ggtcgccgaa gaatgctcgg
      301 atgagttgag gtagctgggt gagtcgctca agtgcagtga tgatggtggc agtgaagtcg
      361 tcgagactgg tggtggcgcg gcggccgacg gtgtcgtgtt tgacgttttc cagacccctt
      421 catcagggtt gagctcgggc gagtaggagg gcagacggaa cagccgcagc cgcccgttgg
      481 tagtggccac gtattctttc accgcgttgg agcggtggac gggatgcccc tcgacgatga
      541 gaaagaccgg gccgggcgtg tcagcgagca gtttgtcgca gaaatcgatg aacttggctg
      601 cgttcagcct gcccggcaca atgtcgtatt tgaaggatcc gctggcggtg accgcggaga
      661 tcatgttgac cgacaaccgg gccccggtgg tggccaccac gggagtctgg ccgagtgggg
      721 cccaggtggt ttcggcgtgg taatccgagc gcaccgaggc ttcctcagcg aagtagatgg
      781 tggcgccgag tctgttggct tcggcgcgga tggccgggta ctcctgggct ttccagcgct
      841 cgacagcgtc ggggtcttgt tggtaggccc gagacaaggg ccgctgcggg gacaacccga
      901 gggtgcgcag cagccggccc acgctgaccg ccgagagcgc cacgccgaac tcccgacgga
      961 tcacctcccg cacgatctcc cgggtccaga gggagaactc aaactgcaac tgccgtgggt
     1021 tggtgcccac gatcaacgtg tacaacttcc gcaactgcgc cccggataat ttgggggtcg
     1081 cccgggcact ggcttggcgc gtaatgcctc aagaccacct tcacggaatt tcgccatcca
     1141 cgcgaacacc gtggagcggt ccatgcccag cgactgggca acgtcctcgg gatgagcacc
     1201 cgcctggatc tgtttcaccg cccggatccg aatagcctcc agagtctggt gatccagctt
     1261 ccgcccgtca ttctcccgca caccgacatt caaccacaat taacgccgaa agtctagcta
     1321 cttacgttct ccttggtaag tgttctcacc ggcgcggcca gactcccgat gctcttcaca
     1381 tctgcccgat aggcgcggat accattttta accgagccaa cccaaaggcg ctttttgagt
     1441 cactcgggta tggtgagatt ttgcccgacc attatgagat ccgggttggc gatgccgttg
     1501 gcagaggtga tcttaggata ttcgctaccg tcaccgtaga acctctcggc gatcgcccaa
     1561 agggtgtccc cgctcaccac cgtatagatc cgctttgccg gggcctcaat cggcgctgcc
     1621 ggagctgccg ccggtgcagc cggggcctga gtcggtgcag ccggggcctc ggctccccca
     1681 gccagggccg tgcccgacgc ccacagcgca cgaccgtcag cggtgtaaat gaccaggtta
     1741 cggtcgtcct gcagtatgag cctgacattc tcaccgctgg tgtgggaggc ccagactgcg
     1801 acgggtacat ctctgtgaaa tctcctttcc acctccttcg tgtagagcac caggttgccg
     1861 tcatcttgca agctggcacg gaccgcgccc ttgccctggg ttttggtcgc ccagaccgga
     1921 gtgttcgact ccgtgtagag caccaggttg ccgtcgccct gcatgatcag gctgtacttg
     1981 ccgttgctag ag
//
LOCUS       DASVXZ010000303        10726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_480619, whole genome shotgun sequence.
ACCESSION   DASVXZ010000303 DASVXZ010000000
VERSION     DASVXZ010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10726
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480619"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VF788_06185"
     CDS             <1..297
                     /locus_tag="VF788_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol maleylpyruvate isomerase"
                     /protein_id="HEX8933769.1"
                     /translation="FAADGIDEVLTWWIQRNSGVWANSQASGTVLYHAADAGRAWTVR
                     LVPGQFPQTTPDAVTEPDGSVVGLADAVYRAAWGRPSGAVTTGDTTLIEVTRAR"
     gene            1432..1782
                     /locus_tag="VF788_06190"
     CDS             1432..1782
                     /locus_tag="VF788_06190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933770.1"
                     /translation="MGGEVLIIGGDPRGVLAGATRAAADLLLLSAAVTSLVAMGFLLA
                     RAAQNEGSGMQLLRVGLGSPLWCCHGSLSTPFSPCAMPASTTTPTDGGGGLQPAGVVR
                     GGQASQRRSRRGTR"
     gene            complement(1794..3059)
                     /locus_tag="VF788_06195"
     CDS             complement(1794..3059)
                     /locus_tag="VF788_06195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005164028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing SpoIIE family protein
                     phosphatase"
                     /protein_id="HEX8933771.1"
                     /translation="MSAPDELRAVSTADELLCRIESVTDVTLAHLAVEDLLAELLDRM
                     QGLLEVDTAAVLLLDPSSEYLVATAAKGIEEEVRQGVRIPLGKGFAGRIAAEKKPVLL
                     KHVDHTNVLNPILQQRRIRSLLGVPLLINREVIGVLHVGTLGARQFTGEDVSLLQIAA
                     DRIGFAIQSRRVEIERAAATVLQRSLLPARLPAVPGVEIAARYVSAEQGGVGGDWYDV
                     FTLPSNQLCVVIGDVVGRGLAAAEVMGRLRSTLRAHALYSNDPAEVLSRLDQQVQHFD
                     RCGMIATVQLAIFELSLDRLHLSSAGHPPPVFAVPDRPATLIDVAKDLPVGMCGEARR
                     RHVTTINVPQGALICFYTDGLIERRDLLLDVGLERLCEAVTADSVESVCTTVMGQLVG
                     NHPPGDDVAVLALRRQLPGESGAVADVNA"
     gene            complement(3338..4141)
                     /locus_tag="VF788_06200"
     CDS             complement(3338..4141)
                     /locus_tag="VF788_06200"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8933772.1"
                     /translation="MSTQLSWDRAGSGEPLLLLHGIGTTRDDFSALRAALETEYDVLA
                     VDLPGHGGSPALSERPTIDALTETIEEDLDALGMGRVHVLGNSLGARIALELARRDRA
                     LSVVSIAPSGLNVLPERIYQSAAMSTFRLLMFILHPAIGPLARFPLGRAALLTGLRSQ
                     PWLATEVEALALREGFGECEDFGRLLFWGIFADVPIGLGKVRCPVILAQGTADVISSG
                     QTPRYLLAVPGATFQPLFGAGHAPQSDAPASILRLVREVNRRADALRTS"
     gene            complement(4367..4822)
                     /locus_tag="VF788_06205"
     CDS             complement(4367..4822)
                     /locus_tag="VF788_06205"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX8933773.1"
                     /translation="MSSIQNDGPMNTAQTRRYSSVDPQTLGRLRILRIGDVELDLDGH
                     RIVVRGTPVHLPRKEFLILRQLMDNAGRVVTRRELLDNAWGPDQAADRNYLEVYIRRL
                     RTKIESDGDQPTRIRTVRGVGYIFDLPPDDSVRHPVAGPSTGILSPRQP"
     gene            complement(4932..5072)
                     /locus_tag="VF788_06210"
     CDS             complement(4932..5072)
                     /locus_tag="VF788_06210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933774.1"
                     /translation="MAARSGTGTAAGPAPSPSPSPSPSPDNYYRQINLAATLFGKLQI
                     AH"
     gene            complement(5595..5891)
                     /locus_tag="VF788_06215"
     CDS             complement(5595..5891)
                     /locus_tag="VF788_06215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933775.1"
                     /translation="MGSGLSPVAPVYEGASLSGGTSVVWKVRAVVVSGGAQGTTRPTF
                     GSGASPTSAVTPNGEIRTLAGNLPPPAGERSSAWTTDGLPGAGAGWVPAGTGPA"
     gene            complement(6424..6753)
                     /locus_tag="VF788_06220"
     CDS             complement(6424..6753)
                     /locus_tag="VF788_06220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933776.1"
                     /translation="MEEDLLDVSYQRRTGPGAGRPAKLYRRSPHQVAVSLPQRRYGLA
                     GQLLFSALEHAERSGYSLRAILNQRAYQLAKNSAKRRTMLLVVMTPGTPLCGYLRSTA
                     FKHASKE"
     gene            complement(7228..7515)
                     /locus_tag="VF788_06225"
     CDS             complement(7228..7515)
                     /locus_tag="VF788_06225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933777.1"
                     /translation="MGLADKAKNMVEDLTDKVKEATGMATDDNREGVSDTDMAPAGPH
                     GVGGSTSTQGNEPSLSGSEASHSSDRLDTGVSSEPNVDPQSPPMGSGDQGG"
     gene            8277..8474
                     /locus_tag="VF788_06230"
     CDS             8277..8474
                     /locus_tag="VF788_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933778.1"
                     /translation="MTTSSEPAQWMLLACEKCGCEREVQLPHEDGTFMTAERYMALHK
                     VAGMVLLCEECAPAGSLRLGE"
     gene            10360..>10726
                     /locus_tag="VF788_06235"
     CDS             10360..>10726
                     /locus_tag="VF788_06235"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8933779.1"
                     /translation="MKLLEWDAQTYDVLPLPHTRWGSGTIRRLRLAGDETVMDLGCGT
                     GRDAERLLDALPDGRVVAVDGSEQMLAQLHQRLRDRMDRVTVVHADLRQPLTLDETVD
                     AAVSVATLHWLPDHDVVFQT"
BASE COUNT         2017 a         3303 c         3509 g         1897 t
ORIGIN      
        1 ttcgccgccg acgggatcga cgaggtgctc acctggtgga tccagcgcaa cagcggcgtg
       61 tgggcgaact cccaagccag cggaacggtg ctctaccacg ccgcggacgc cggacgagcc
      121 tggacggtcc gcctcgtgcc cggccagttc ccgcagacca caccggatgc ggtgaccgag
      181 ccggacgggt cggtggtggg gctcgccgac gcggtctacc gtgccgcgtg gggcaggccg
      241 tcaggtgcgg tcaccaccgg tgacacgacc ctcatcgagg tcaccagagc caggtgaatc
      301 acgcccgcgc caggccaccg cgggtggcag actccgcagc gtggccgaac agcagtgaca
      361 taagtaatgc gtgtcgtgta ctcggctagg tcacgcgcgc gggagggcga tcagctcgtc
      421 gtcacgaagc tcgatcggct tggccgttcg ctggagcatc agatcgagct gtccaagagc
      481 tgcagtcccg cagggtggat ctggtgtgct gaaccaggga atcgacaccc tcaccctcct
      541 ggctcgctac ctgtccggcg gcgcggatga agtcggcgag tagcccgggc gcgtcggcgg
      601 ccagggcgag cgtgtcctca tggtgttctc gcgggatgat gagcacgtgc gtggccgcct
      661 gtgaggcgat gtttcaggtc gtgatgcggt gggggcgcca gcggtgctgg cgcagccggt
      721 gttgacgagt ccgcgatcac agcaggtggc ccagcgaaaa cgcaacggtg gcagggtgtc
      781 gctcatgtca atcctcgagt gctggtcata gcgttgctgc gccgggtacc cggacaggta
      841 gcacctgacc ggggtttcgg cggccggggc cgatttacat gtccggaaag aatgctctga
      901 ccccaggtct tccgtctgaa caagtagggt taggaaagcg ggtcacacca ctcgcccggg
      961 cgacaccgat gaaatactcg attcctgtac tgttttggcc acagcgcatt tgaccgtgca
     1021 acgtaacggt tgaatttgtg gtgttgtcac actcaagccc gtcacatgtg acgcctggcg
     1081 ctggggttgt cctaggtgat gccatggcac tgccggggac aaaagcgctg gaggttgcta
     1141 tcagcgcggc tgtcagaata ccgaggccaa ctgctcgttg ctggttcatg acaacgactg
     1201 taagggggaa ggtaggtgtc cccggccgtg gtaccggctg gtgtgtgcct tgaccccagg
     1261 gactgcatag tcatgcggga cgggtcgcat aatcaggcgt ttggggcgct ggccgggtga
     1321 taggcgaatg gaactgcaac tagaaccaga acgcacccta ggccggttag ggcaagtcgg
     1381 agttagtgtt cggccggtcg gggtcgacgt cgagcgctgc ggggcgtcgc gttgggcggt
     1441 gaggtactga tcatcggtgg agacccgaga ggggtactgg cgggggcgac tcgcgccgcc
     1501 gccgacttgc tgctgctcag cgccgcggtc accagcctcg tggcgatggg cttcctgctt
     1561 gcccgtgcgg cgcagaatga gggcagcggc atgcaactgc tacgggtcgg actcggctcg
     1621 cctctgtggt gctgtcatgg ttcgttgtcc acaccgtttt cgccgtgcgc catgcccgcc
     1681 tctactacca cgccgacgga cggtgggggt ggacttcaac cagcaggagt ggtccgcggc
     1741 ggccaagctt ctcagagacg cagccggcgg ggaacgaggt gattgtggcg gcatcaagcg
     1801 ttgacgtcgg ctaccgcgcc gctctcgcca gggagttgac gccgaagggc cagcactgca
     1861 acatcatcgc ccggcggatg attccccacg agctggccca tgacagttgt acagaccgac
     1921 tctactgagt cagccgtgac agcctcacac aagcgttcca ggccaacgtc aagcaagagg
     1981 tctcgacgct caatcagacc atcggtgtag aaacagatca gcgcaccctg tggcacgttg
     2041 atagtcgtca cgtgtcggcg ccgtgcctca ccgcacatgc ccaccggaag gtcctttgct
     2101 acgtcaatca aggtggcagg tcgatcaggc acggcaaaca ccgggggagg atggcctgct
     2161 gaggacaggt gcaaccggtc aagtgatagc tcgaagatcg ccagctgcac ggtggctatc
     2221 attccgcacc gatcgaagtg ctgtacctgc tggtccagtc gggaaagtac ctcggcagga
     2281 tcattgctgt agagggcatg agcgcgcagc gtgctccgca ggcgtcccat cacctccgcg
     2341 gcagcaaggc cgcgcccgac cacgtctccg atcacgacgc ataactggtt ggagggaagg
     2401 gtgaatacgt cataccagtc cccgccgacg ccgccctgct cggcggaaac gtagcgggcc
     2461 gctatctcca caccgggtac ggcgggtaga cgcgccggta gcaggctgcg ttgcagcacc
     2521 gttgccgccg ctcgctcgat ttcgacgcgt cgggattgga ttgcgaaacc gatccggtca
     2581 gcggcgatct gtagcaagct gacgtcttcc ccggtgaact ggcgagcacc gagcgtgccg
     2641 acatgcagta ccccgataac ttcccggttg atcaacagcg gcacaccgag cagggaacgg
     2701 atcctccgct gctgcaagat gggattgagc acattggtat gatcgacgtg cttaagaagt
     2761 accggtttct tctctgccgc gatgcgaccg gcaaagccct ttcccagtgg aattcgaact
     2821 ccctgacgaa cttcttcctc gatccctttc gcagcggtgg caacaaggta ctcggaggag
     2881 ggatccagca agagcaccgc cgccgtatca acctcaagaa gtccttgcat ccgatctagc
     2941 agctcagcca aaaggtcctc gacagcgagg tgggccagcg tcacatcggt taccgactcg
     3001 atccggcaca acagctcatc agccgtcgat acggcgcgca gctcatccgg cgctgacatg
     3061 atccgcctag cctaacgcac aagcaccacg cagcaactcc ccgccagcgg tgcttggtgc
     3121 tccagcgccg catcgcagcg ggagtgacaa aatggaactt ccacaccggc ggtaagacgc
     3181 cagatcgact tgtttcccag ttcttgccgt tcaagactcc ccctcgcata agatcatcgg
     3241 ttacgccacc ggacatggtc gcgtaactgc gggagaacga tcagacccag atcagggtca
     3301 acgcaaaggc cggcacttgc agcgtctcag gcttccttca gctggtgcgg agagcgtcgg
     3361 cgcgccggtt cacctcgcgc actaatctca ggatgctcgc aggggcgtcg gactgcggcg
     3421 cgtggcccgc gccgaatagc ggctggaacg tcgcgcccgg cacggccagc aagtagcggg
     3481 gcgtctgccc gctgctgatg acgtcggcgg tgccctgggc gagaatcacc ggacagcgca
     3541 ccttcccgag cccgatcggg acgtcagcga agattcccca gaacagcagg cgcccgaagt
     3601 cctcgcactc gccgaacccc tcccgcagcg caagggcctc cacctcagtg gccaaccacg
     3661 gctgtgaccg caggcccgtg agcaacgcgg cacggccgag gggaaagcgc gccaaaggtc
     3721 caatcgctgg gtgcaggatg aacatgagca accggaaggt actcatcgca gcgctctggt
     3781 agatccgctc gggcaacacg ttgaggcccg atggcgcgat cgacacgacg gacaaggccc
     3841 ggtcacgtcg agcgagttcc agcgcaatac gggcgccgag ggagttgccc aggacatgca
     3901 cacggcccat gcccagggca tccaggtcct cctcgatagt ctcggtaagg gcatcgatcg
     3961 tcggccgctc cgatagcgcg ggtgagccgc cgtgtcccgg cagatccacg gccagcacgt
     4021 cgtactcggt ctccagcgca gctcgcagcg ccgagaagtc atcgcgggtc gtgccgatgc
     4081 cgtgcagcag caacagaggt tcgccggatc cggcacggtc ccaggagagt tgagtgctca
     4141 cacctcgttg gtacccgctc gcggaccaac gaggcacgat tctctactca gggtgtccac
     4201 cgtcacgccg actcgtacag ccatggcagg aggctctcag tagggatcat cacgaacacg
     4261 caacacacgc gatcctgagc gagaccttgc ctccagccca tctgaccgca gttataagtt
     4321 gtaatcgcaa cgagcaccac gaaccgcatt ccatcgagcc gcaggttcaa ggctgacgcg
     4381 gcgagagaat gccggtggag ggtccggcaa cggggtgccg gaccgaatcg tctggtggta
     4441 ggtcgaaaat gtagccaacc ccgcggactg tccggatgcg ggttggttgg tccccgtcac
     4501 tctcgatctt cgtgcgaagc cgacgaatgt agacctccag gtagttccgg tcggccgcct
     4561 gatctggtcc ccatgcgttg tccagtaact cacgccgggt gacgactcga ccggcgttgt
     4621 ccatcagttg ccggagaatc aggaactctt tgcggggcag gtgaacgggc gttcctcgga
     4681 caacgatcct gtgcccatcg aggtctagct ccacgtcacc gattctcagg atccgcagcc
     4741 gcccgagagt ttggggatcg accgatgagt aacggcgtgt ctgggctgtg ttcatcgggc
     4801 cgtcgttctg gatcgatgac atcagccaca ccgcctcgag aggctggggg tgaacatggg
     4861 tgagcgacgt gggcagccgg ccaggaagga ctgcagagat gggtcggtcc agaattgcac
     4921 cacgagccgc ctcagtgagc gatctgcaat ttgccgaaga gggtggccgc cagattgatc
     4981 tggcggtagt aattgtccgg cgacggcgac ggcgacggcg acggcgacgg cgccgggcca
     5041 gcggcggtgc cggtgccact gcgcgcggcc acaccgacga cggcggggcg cacatcgctc
     5101 cgacgaacca gcccggcacg tccatgatgg gacataaagc tccaagtcag ctgagccaac
     5161 cctaaataag aataaggcta ggcttcctag ccggggagaa tcaaccacga tagtcgctgc
     5221 gtaaccaagc gggcaccgac tgcggaccac tcagacacta tccagtaatt gtccgatcgc
     5281 tggctgcagt cgaacttgtt ctggcacttg atgatgacca cgaaattcct gggagcaccc
     5341 tagacgtccg cgttggatta agttagcctt ccctaactta cagaggtttg taccatttgt
     5401 ggagcggcta tggagaggcg tcgagcgatc gcctgggctg gttcgatcac cgtgacgggg
     5461 tgtgtcagcg ccctcatgct gggctcgctc gtcggtgcgt acgacctggg gccatcacct
     5521 acagtggaga cgccagtgga cagcctccgg ccaaaaccgg ggaccattgc gcctggaggg
     5581 ttaccgggag gtgctcaagc cgggccggta ccggcaggta cccaacccgc gccggcaccg
     5641 ggaagtccgt cggtggtcca ggcagagctg cgctccccgg ctggcggagg gaggttcccg
     5701 gcgagcgttc tgatctcgcc gttcggcgtg acggccgacg tgggtgatgc tcccgagccg
     5761 aaggtcggcc tcgtggtccc ctgcgccccg ccagatacca ccacggcgcg caccttccac
     5821 accaccgagg tgcccccgga cagggacgcg ccttcgtaca caggcgcgac cggcgacagg
     5881 cccgagccca ccagtgcggt ctctctaccg cggaagaccc ccactacgcc ctcgaaggtt
     5941 gatgcccccc agcccggcgg tggtgcccgg cggcagggtc gcgtccagca ggggatacct
     6001 gggatggcat caagggttga tctttccggg ccatcggttg cacgtggcaa ggcatctggg
     6061 tcgggccggt caccgggtgg tgaaggcagg catggagcgg ggagccgcgt catggatggc
     6121 atgggtcatc ggggcggcta agtcgattcg gtgccgcgcg aagaaaatcg aggtccgttc
     6181 gctggactga gccctgcatg cgggatgacg tgctcggcac gaggtggacg gtcagccggg
     6241 gtccctcatt cggagatagc gggctcgaga cggacacaac agggaggtga ggcgcaggtg
     6301 gccggtgagc cccgtgttgg cgaggccctc aaggagccct taaacaggga caggttcatt
     6361 ccgcacacga gctcggtgcg ttgctgcgcc aggatgtgaa aaggacaatt tccgagcaca
     6421 acatcattcc ttcgatgcgt gtttgaaagc cgtactcctc aagtatccgc agagcggtgt
     6481 cccgggcgtc atgactacca gcagcatcgt gcgccgtttc gccgagttct ttgccagttg
     6541 ataggcgcgc tggttgagaa tcgcccgcag tgagtacccc gagcgctcgg cgtgctccaa
     6601 agcgctgaac aataactgcc cggccaggcc gtagcggcgc tggggcagcg atacggccac
     6661 ttgatggggc gagcgcctgt acagcttggc cgggcggcca gcgccggggc cggtgcggcg
     6721 ctggtaactc acgtcgagca ggtcctcttc cactagccga tcgagatgaa aggccgcggt
     6781 cgcacgcggc agccccaccg gcggtgaaag gaggcggttg aagtcaagca gatacgcgac
     6841 tgcttgagtc ggggtacagg tcaatgtcca cggacggcac tatatcggct ggaacgtgcg
     6901 ggcgatgatc accaactccg tgcccctgac gcttccgaca acgcgggagg tcggtcgcgg
     6961 gtgtgtccgc ggtcgttgat cagtcggatg gtggggagtg tctcaggtcg atggtgcgga
     7021 tggtccccac tgcccgtagc ccttggcgag ggtaaacgtg ccaagggcta cggtagagcc
     7081 gtcccggtga ccaactcgca gctcgcgatg atcgatgcag tcatgctcgc ccagagtctc
     7141 tacaaacacg agccggggcc cgcaccaaca tggcctggtt cgaagcccaa ctcccacgag
     7201 cgaggcgcca actgctcaaa aattgtgtca gccgccttga tcccctgaac ccatgggtgg
     7261 gctttgtgga tcgacgttcg gctcactcga aacaccagtg tcgagccgat ccgaactgtg
     7321 tgacgcctcg gaacccgaca gtgatggctc atttccctgc gtgctggtcg agcctccgac
     7381 accgtgagga cctgctggcg ccatatcagt gtcagagaca ccttcgcggt tgtcatccgt
     7441 cgccataccg gtggcctctt tgaccttatc cgttagatct tcaaccatgt tcttggcctt
     7501 atcagcaaga cccatgacat tctcccttca ccgaagcgcc gctcgccgct tcttgttcaa
     7561 gaggacctgc gcctggacta ccacctcaga agcggccgta aacatcacga atgcacacgc
     7621 gcctcacctg ctgagatgtt taatcgcaag ccttccgccc accgggaacc gagacctacg
     7681 tgcgtggccc agcggtcact cacgggatca tgccggggac cggatccatt ccgcggcgac
     7741 cgcccggtct acaacggatc aaccgccgca gcgccaacca gcttcctttt gccgcaccgt
     7801 gcgttcggag tgctcggacg gcgtagtccg agcaggtggg gaaaaccggc agcaagccga
     7861 tcggcgagca ctgatgtcac gttgatagac ctggatgaga gcgactaggt gctccgccgg
     7921 ccggaggcga cgactggtcg caggcgacag taacggcccc ccgccagtca ccgcagtcac
     7981 aaattgcggc gcagcgaaaa gtcccaggat caggcagttg ccgtccaggc tctcggcaat
     8041 gcagcaaccc gattcgagga gacacgcatc gcggaggcag gacccaccgc gcctttggcg
     8101 gtaggaccag cgcgaaggcc tcggtccgta acgccagttt tgatcaaatt gtgatgacgc
     8161 gcgaccttgg cgatcaaccc cacttcaagc ggctgggaac gggatgggtg ggtggcgcag
     8221 ctgggccaac gccagccggt cacgtcgccg cgccaggttc ttgaaacgat gtgggcatga
     8281 cgacgagctc tgaacctgcc caatggatgt tgctggcgtg tgagaagtgc ggatgcgaac
     8341 gggaggtgca gctgccccac gaggacggca ccttcatgac ggccgagagg tacatggcct
     8401 tgcacaaggt ggccggcatg gtgctgctct gcgaggagtg tgcacccgcc ggatcactca
     8461 gactcgggga gtgacttcct agcagctcaa tacgcgtggg ttcgaccggc tggcagtcgc
     8521 ttgggccgac ggccgacgcc cttacctgcg ccggcccgcg acgaccgcga ggcttgaccg
     8581 ccctgatcga ctatgcccgc tgcggcggaa tcggtgggtt acgcgagcgg cagccgagcg
     8641 gctcggtcag gcaccgacag ggtgcacagg aaaggggccc gaccgaatgg ccgggcccct
     8701 gcgagggaat gaacctgtct tgattccgat gcacgccaaa acgtcgcggc gaccacctcc
     8761 atctcgaccg ttcctcaacc tcctgcgttc atttgtgtac tagccttgcg ctgcctctgc
     8821 aaacgcttac tgggccatcc gctgatgtta tcggcacatg ttttaacacc cgcagccagc
     8881 gttgtcaagc cgcgaaccac agctcacttg cacttgtggg cggccgaacc catgccggtt
     8941 gccgacgccg atgaccaagc gtgcagatgg agctgactta tccgctattg agagtcatct
     9001 tcatcgaagg ggaaccgcag cgaccgcatc gccgcttcgt cacgtagagt agtaggacgc
     9061 tgaagctccg ctgctccgtg gtcggcagcg tgagggaaca gattccggga cggtcgcgtc
     9121 gttggtctaa ccccagtgac gtctgacgcc agttgctgtt cgtctgcttg accagccgtg
     9181 cggaacaacc cgtcgtcctg gttgtgcggt gtcatgtgat cagtcaattc gttccttttc
     9241 ttggtcatgg atgctgcgtg cttgcgtcct ctttcctgac ccgaggacgg cacagcacaa
     9301 gcgggctact cactcaatgt cccgcgacgt ggccagcagt ctgatccgag gacaccggtc
     9361 cactctgtgc caactggctc gcgagcgcgg tcagcccccc tctgggtcag tctagctggt
     9421 gacgatccag gtacccgaac gccaccgtcg gtgatgcggc tgggtacagc cacctgcacc
     9481 tggatatcac gttcaacttt ggggcggatc ccaatgcgtg cggacctgcc gcatcttgcc
     9541 gtcgcaggcg caaggttctg cgttcatcgt ccgcgacttc gaatcgcgtg cgggcgaggc
     9601 cgatgagggc ggcggagaaa cggtctggtg atctttagca ggtgcatctt gcgcgggagg
     9661 cagggccacc gggacgggct gcgcgttcac tggcgcctgc cggtcggcta cggggtgcac
     9721 gacgggatcc cgatgtacgg gggtggagcg cgcgaccacc acagaatgat ccaccgggtt
     9781 gggccggggc ggggcgggcg gcggaccggg gttgggttgt ggggcggtga ctggtggtga
     9841 taccgggttg ggctgcgggg ccatgatggg cggacctacc ggactgtgct gctgtgcagt
     9901 gacctgctgg tcagccggat caatggctgg gtcttgggac ggggcggtga actccgcggt
     9961 cgtcacacct attagcactc cgaggatcgc ggcgcttgcc accagggcaa ttgccgcgct
    10021 acgcagactg accacaggct cccccaaggc tcgctaactg atgatgtctt gctgagttag
    10081 cgatacaaga ccacattccg ttagcgaaca tctcatattc cccccacgag agttggttcc
    10141 accgacgcat ctaagcgccc aggcagatgg accaggacgg cgctggtcgc ggtgagcgtc
    10201 atgatgacga gccgaaggct gcccagccgg gcgagcgtgc tcacggtgga actgtacgcg
    10261 gatttcccgc tgaccagtcg ttgtgggagg acaacacgct ctctcatgat atgagaaaat
    10321 tgtcccgatt aatgagagcg ctcgagtacg atcgacgtcg tgaagttact cgagtgggac
    10381 gctcagactt acgacgtgct gccgctgccg cacacgcggt ggggcagcgg cacgatccgc
    10441 cggctgcggc tagccggtga tgagaccgtc atggacctcg gttgcgggac gggtcgtgat
    10501 gctgagcgcc tactcgacgc gttacccgac gggcgggtag tcgccgtcga tgggtccgaa
    10561 cagatgttgg cgcagctcca tcaaagactg cgcgaccgga tggaccgggt caccgtggtg
    10621 catgcggatc ttcgtcagcc gttgaccctc gatgagacgg tggacgccgc agtgagcgtg
    10681 gcaaccctgc actggctgcc tgatcacgac gtggtgttcc agacgg
//
LOCUS       DASVXZ010000304         3366 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_301384, whole genome shotgun sequence.
ACCESSION   DASVXZ010000304 DASVXZ010000000
VERSION     DASVXZ010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301384"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..361
                     /locus_tag="VF788_06240"
     CDS             47..361
                     /locus_tag="VF788_06240"
                     /inference="COORDINATES: protein motif:HMM:NF022280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion target"
                     /protein_id="HEX8933780.1"
                     /translation="MADRYEVLTEALRAHAARIDGFADRLAQAVDAAHEVSLPSDAYG
                     VCCLDLPLMLNPLQYLGVAALGNGQKRLSTTVANVENTANDYAEIDGRNALALHRAME
                     VR"
     gene            362..1156
                     /locus_tag="VF788_06245"
     CDS             362..1156
                     /locus_tag="VF788_06245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933781.1"
                     /translation="MSDPLIAQANHDTTGYAGIGILDSTTQCVDAIASGDWIEAGIGV
                     ASTIVDGFSLYEDPAAALASYGVGWLIEHVHALSEPLDWLAGNSGAIDAHAQTWGNVA
                     DAVSAVRQDYADAVAGDLTTWQGAAADAYRGRATDTAHLLDALAVAADGIRVAITLSG
                     KVVSDVRGKIQTIITNVVGALISWIAELVCSGGLATPVVAEQAITFIAKWAVKIAELV
                     AKLLRTIKTLMPLLRHLDDIFSTLREALHSQPALSPSALSRALDAR"
     gene            complement(1181..>3366)
                     /gene="mfd"
                     /locus_tag="VF788_06250"
     CDS             complement(1181..>3366)
                     /gene="mfd"
                     /locus_tag="VF788_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEX8933782.1"
                     /translation="FSVPALALAVLTESDITGARGGTGSRDMSKMPVRRRNAVDPLAL
                     RPGDHVVHEQHGIGRFLEMVERTVGGSTREYLLVEYAPSKRGHPGDRLYIPTDQLDQV
                     TRYVGGELPTLNKLGGSDWAKTKGRARKAVKEIAAELVQLYAARQSSPGHAFGPDTPW
                     QAELEDAFAYTETPDQLAAINEVKTDMRRSVPMDRVVCGDVGYGKTEIAVRAAFKAVQ
                     DGKQVAVLVPTTLLAQQHLQTFADRMHSYPVTVRGLSRFSSPAEATEVLRGLADGSVD
                     IVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKALRTAVDVLTMSATPIPRTL
                     EMSLAGIREMSTILTPPEDRHPVLTYVGTYDDKQVGAAIRRELLRDGQVFYVHNRVSS
                     IEKAARRIRELVPEARIAVAHGQMNEDQLERTVAGFWHREFDVLVCTTIVETGLDISN
                     ANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPPETPLTETAHDRLSTIAQHT
                     ELGAGMAVAMKDLEIRGAGNILGGEQSGHIAGVGFDLYIRLVGEAVEAFRSAAGAAPS
                     DGLPEATPVRVELPVDAHLPHDYIPGERLRLEAYRKIAEALDADALTAITDELRDRYG
                     PLPPPVVTLLDVARFRQVCRAHGVSEVTVQGSRLRFAPVTLRDSQLVRLNRLYPQAAY
                     KSTVKTLSVPRPTEGSNRIGAPPLRDRDLLDWCTRLVTSVLTLEG"
BASE COUNT          525 a         1111 c         1175 g          555 t
ORIGIN      
        1 ggagtacttc gccgaccgcg gttacctgcg ctaaggaaca cagacgatgg ctgaccgcta
       61 tgaggtgctc accgaggcgt tacgggcaca tgcggcaaga atcgacggct tcgccgacag
      121 gctggcccag gcagtggacg cggcgcacga agtgagcctg ccctccgacg cttacggggt
      181 ctgctgcctg gatctaccgc tgatgctcaa cccattgcag tacctgggag tggccgcgct
      241 gggcaacggt cagaaacggc tgagtaccac cgtggccaat gtcgagaaca ctgcaaacga
      301 ctacgcggaa attgacggcc gcaatgcgct ggctttgcac cgggccatgg aagttcggta
      361 gatgtcggat ccgctaatcg cccaggcgaa tcacgacacc accggctacg ccggaatcgg
      421 aatcctcgat tcgaccacgc aatgcgtcga cgccattgcc agcggggact ggatcgaggc
      481 cgggatcggt gtggcctcga ccattgtgga cgggttcagc ctctacgagg acccggccgc
      541 cgcgctggct tcctacggcg tcggctggct gatcgagcat gtccacgcac tgtccgagcc
      601 gcttgattgg ctggccggca actccggtgc aatcgacgcc catgcccaga cctggggcaa
      661 cgtcgcggat gccgtgtccg cggtgcgcca ggattacgcc gacgccgtgg cgggcgacct
      721 gaccacgtgg cagggcgcgg ctgctgatgc ctaccggggc agggccaccg acaccgccca
      781 cctcctcgac gccctcgccg ttgccgcgga cggtatccgg gtcgccatca cgctgagcgg
      841 gaaggtcgtc tccgatgtgc gtggcaagat tcagacgatc atcaccaacg tcgtcggtgc
      901 tctgatctcc tggatcgccg agctggtctg tagcggtggg ctcgccacgc ccgtggtggc
      961 cgagcaggcc atcactttca tcgccaagtg ggcagtcaag atcgccgaac tggtcgcgaa
     1021 gttgctccgg acgatcaaga ccttgatgcc gctgctgcgc cacttggacg acatcttcag
     1081 caccctcagg gaggccctgc actcccagcc cgcgctcagc ccatccgctc tatcccgcgc
     1141 actggatgca cgctgatcgc gacatggatg tttcccgctg ctagccctcg agggtgagga
     1201 ccgaggtgac caggcgggtg caccagtcga ggaggtcccg atcgcgcagt gggggggcgc
     1261 cgatgcggtt ggaaccctcg gtgggccggg gaacggaaag ggtcttcacg gtggacttgt
     1321 acgccgcttg cgggtagagc cggttcagtc ggacgagctg ggagtcccgc agcgtgaccg
     1381 gggcgaagcg caggcgggag ccttgcacgg tcacctctga caccccgtgc gcccggcaca
     1441 cctggcgaaa ccgggcgacg tccagcagag tcaccaccgg aggtggcagg gggccatagc
     1501 gatcgcgcag ctcgtcggtg atggcagtca gcgcgtcggc gtccagggct tcggcgatct
     1561 tgcggtaggc ctccaagcgc aaccgctcgc cagggatgta gtcgtgcggc aggtgggcgt
     1621 ccaccggcag ctcgacccgc accggcgtgg cctcgggcag gccatcagat ggggccgcgc
     1681 cagccgcgct gcggaaggcc tcgacggcct caccgaccag ccggatgtag aggtcgaagc
     1741 cgaccccggc gatgtgtccg gattgctcgc cacccaggat gttgcccgcg ccgcggatct
     1801 ccaggtcctt catcgcgacg gccatgccgg cgcccagctc ggtgtgctgg gcgatggtgg
     1861 agagccggtc atgcgccgtc tcggtcagcg gcgtctcggg ggggtagagg aaataggcgt
     1921 agccacgttc ccggccacgc ccgacccgcc cgcgcagctg gtgcagctgg gccaggccga
     1981 gcagatcccc gcgctccacg atcagggtgt tggcgttgga gatgtccagc ccggtctcga
     2041 cgatcgtggt gcacaccagc acgtcgaact cgcggtgcca gaatccggca acggtgcgtt
     2101 cgagctggtc ctcgttcatc tggccgtgcg ccaccgcgat gcgcgcctcg gggaccagct
     2161 cgcggatccg gcgggcggcc ttctcgatgg aggacacccg gttgtgcacg tagaagacct
     2221 gcccgtcgcg cagcagctcg cggcggatcg cggcacccac ctgcttgtcg tcgtaggttc
     2281 cgacgtaggt cagcaccggg tggcggtcct cgggtggggt gaggatggtc gacatctcgc
     2341 ggatgcctgc gagtgacatc tccagagtcc gcgggatcgg ggtggcagac atggtgagca
     2401 cgtcgacggc ggtgcgcagg gccttgatgt gctctttgtg ctcgacgccg aagcgttgtt
     2461 cctcatcgac caccaccagc ccgaggtcct tccagcgcac tccggtctgc agcagccggt
     2521 gggtgccgat cacgatgtcg actgatccat cggcaagccc gcgcaacacc tccgtggcct
     2581 cggcggggct gctgaaccgg gacagcccgc gcacggtcac cgggtaggag tgcatccggt
     2641 cggcgaaggt ctgcaggtgt tgctgggcga gcagcgtggt ggggaccagc acggccacct
     2701 gcttgccgtc ctgaacggct ttgaaggcgg cccgcacggc gatctcggtc ttgccgtagc
     2761 cgacgtcgcc gcagaccacc cggtccatcg ggacgctgcg gcgcatgtcc gtcttaacct
     2821 cgttgatcgc ggcgagctgg tcgggcgtct cggtgtaggc gaaggcgtcc tccagctcgg
     2881 cctgccacgg ggtgtccggg ccgaaggcgt gccctgggga ggactgccgg gccgcgtaga
     2941 gctgcaccag ctcagcggcg atctccttga ccgctttgcg ggcccggccc ttggtcttgg
     3001 cccagtccga gccgccgagc ttgttcagcg tcggcagttc accgccgacg tagcgggtga
     3061 cctggtcgag ctggtcggtg gggatgtaga gccggtctcc cgggtgaccc cgcttgctgg
     3121 gcgcgtactc caccagcagg tactcgcggg tagagccgcc gacggtgcgc tcgaccattt
     3181 ccaggaaccg gccgatgccg tgctgctcgt gcaccacgtg atcgcctggc cgcagcgcca
     3241 gcggatcgac ggcgttgcgg cggcggaccg gcatcttcga catgtcccgg ctgccggtgc
     3301 cgcctcgcgc cccggtgatg tcgctctcgg tgaggaccgc cagcgccaac gcgggaacgg
     3361 agaaac
//
LOCUS       DASVXZ010000305         3196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_122620, whole genome shotgun sequence.
ACCESSION   DASVXZ010000305 DASVXZ010000000
VERSION     DASVXZ010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122620"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..691
                     /locus_tag="VF788_06255"
     CDS             <1..691
                     /locus_tag="VF788_06255"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933783.1"
                     /translation="RGAAPCSVLSWRLWVVSVLLVDDHAAFREPLSFMFDREPEFTVV
                     AQAGSLAEAREMLNGVDVAVVDLNLPDGDGTELIGELRAANPQVTVLILTASADQSTH
                     ARAVEAGAAGVLHKSVGIWDIIDAVRRLEIGEMLLSPDEVGELLRLASQQRTQDREAR
                     LAIESLTPREREVLQGLAGGLNDKEIAERLYLGLGTVRSHVVSILKKLGVHSRLQALV
                     FAVRYGAVKIG"
     gene            808..1158
                     /locus_tag="VF788_06260"
     CDS             808..1158
                     /locus_tag="VF788_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933784.1"
                     /translation="MEKMRVLVANEMCAYREVIAAVFQELRPHHEIRCVEPDDLDDEI
                     SRHHPHLVVCSRLTAAVESLMSWVMLYPNGENQAVIKTAGEQVAVANVGFNDLLSVMD
                     KTELLHSGSWFETA"
     gene            1275..>3196
                     /locus_tag="VF788_06265"
     CDS             1275..>3196
                     /locus_tag="VF788_06265"
                     /inference="COORDINATES: protein motif:HMM:NF037144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEX8933785.1"
                     /translation="MFLAALVVAVVSIALANNTAQAPTFKQDWSNTGLITANNNWGSV
                     PGIIGYNGTGLALSAGTDPQTILLDGSLTPVTVLANQTNTGLNTGGVAEFQLANPTIA
                     LQGDNTASAPHIVLNLDTTGRSNIHVGYNLRDIDGSTDNAAQQVALQYRVGSVGNYTN
                     IPAGYVADATTGPSQATQVTPVSVTLPAAADNQSLVQLRIITSRATTNQKDEWVGVDD
                     IAVTSTPTASSQSVATNAAKTITLSGTDADGDNLTFAVASAPTNGTLGAIGTPTCTGT
                     APKTCQANVTYTPNAGFNGSDSFQFRVNDGTVNSANATVSITVDTVAPSAPLITSPAN
                     NSYDNDGAFTVSGTAEANSSVEIFEGVQSKGTTTADGSGSWSINLSGVSEGDHTYTAR
                     ATDAAGNTSPSSTTAVTVKVDTTAPNAPVIASPANNTITNDATPTFSGTAEGSSTVEI
                     FDGGSSLGTTTADGSGDWSFTPSASLSGAVHSITAKTADAAGNISSASTAINLTVDTA
                     ASGAPSITNPANDAITNDNTPTFGGTAEANSTVELFDGSTSLGTTTADGSGDWSFTPG
                     ASLNEGTHSITATAEDAAGNTSTASTALSMTIDTVAPSAPQITAPANAAVTNDATPTF
                     SGTAEANSTVEIFDGST"
BASE COUNT          671 a          996 c          949 g          580 t
ORIGIN      
        1 ccggggggcg gctccgtgtt cggttttgag ctggaggttg tgggtggtta gcgttctgct
       61 cgttgacgat catgcggctt tccgggagcc gctttcgttc atgttcgacc gggagccgga
      121 gtttacggtg gtcgcccagg cgggatcgct ggccgaggcg cgcgagatgc taaatggcgt
      181 tgacgtagcg gtcgtcgacc tgaatctgcc cgatggtgac ggcacggagc tgatcggcga
      241 gctacgcgcc gccaacccgc aagtcacggt gttgatcctg actgctagcg ccgaccagag
      301 tacacacgct cgggcggttg aggcgggcgc agccggggtg ctgcacaagt cggtgggtat
      361 ctgggacata atcgatgcgg ttcgccgtct ggagataggt gagatgctgc tttcaccgga
      421 cgaagtaggt gaactgctcc ggctcgccag ccaacaacgt acgcaggatc gagaggcccg
      481 gctggccatc gaatcgctca ccccccgtga acgggaggtg ctccaggggc tagccggcgg
      541 tctgaacgac aaggagatcg ccgagcggct gtacctgggt ctcggaacag tacgtagtca
      601 cgtcgtgagc atcctcaaaa agctaggggt gcattcacgg ctgcaggcgc tcgtgttcgc
      661 ggtgcgctac ggggccgtta agatcggctg aactccctct actctgggag aattcaagct
      721 cgttattgcc aaaaaagttg gcggatactc gaaaaatcca tcaaatgcta gaggcgtgca
      781 gagcagcgga actttacgat cactcacatg gaaaagatgc gcgtcttggt ggccaacgaa
      841 atgtgcgcgt accgcgaggt tatcgccgcg gtctttcaag agcttcgtcc gcaccatgag
      901 atacgctgcg tagaacctga cgacctcgac gacgagatct cacgccacca tccgcatctg
      961 gtggtgtgca gtcgtcttac cgctgcggtg gagtctctca tgtcgtgggt catgctctac
     1021 cctaacggtg agaaccaggc ggtgatcaag accgccggag agcaggttgc ggtggccaac
     1081 gtcggtttca acgatctact ctcagttatg gataaaacgg agcttctgca cagcgggagc
     1141 tggtttgaga cggcgtgatg ctttttatat ttagaaattt tgttagcgtc gttgtcagcc
     1201 tcttgcagga ggcgtctcgc ggggtaagca aggggctcgc gaagcccttc cgtcgcagag
     1261 tgctgttggc aggcgtgttc ctggctgctc tcgtcgtcgc tgtcgtatcc atcgctcttg
     1321 ccaacaacac ggcgcaggcg cctactttta agcaggactg gtcaaacacg ggcctcatca
     1381 cggctaacaa caactggggc agtgtgccgg ggattatcgg gtacaacggc accggcctgg
     1441 cactaagcgc cggaacggat cctcaaacga tcctactaga cggttcgctc acgccggtaa
     1501 ccgtcctcgc caaccagacg aataccggtc tgaacacggg cggcgtcgca gagtttcagt
     1561 tagcgaaccc gacgatagct cttcaaggtg ataacaccgc aagcgcgccg cacatcgtcc
     1621 tcaacctcga cacgactggc cggtcgaaca tccacgttgg ctacaacctg cgcgacatag
     1681 acggatcgac cgataacgcg gcgcaacagg tagcgctgca gtaccgcgtc ggcagcgtgg
     1741 gcaactacac gaacatcccc gccggttatg tcgcggacgc cacgacggga ccgagccagg
     1801 cgacacaggt gacccccgtc agcgtgaccc tgccggcagc tgccgacaac cagtcgctcg
     1861 ttcagttgcg catcataacc agcagggcca ccaccaacca gaaggacgag tgggtcgggg
     1921 tcgacgacat cgcggtcacc tctacgccga ccgccagctc ccagtcggtt gcgaccaacg
     1981 ccgccaagac gatcaccttg agcggcaccg acgccgacgg cgacaactta accttcgcgg
     2041 tagccagcgc tcctaccaac ggaaccctgg gtgccatcgg cacgccgacg tgtacgggga
     2101 cggcgccgaa gacctgccag gcgaacgtca cctatacgcc caacgccggc ttcaacggtt
     2161 ctgactcctt ccagttccgc gtcaacgacg ggaccgttaa cagcgccaat gctaccgttt
     2221 cgatcacggt tgacaccgta gccccgagcg cccctttgat cacgagcccg gccaacaaca
     2281 gctacgacaa cgacggcgcc ttcacggtct cgggcacggc tgaggctaac agcagtgtag
     2341 agatctttga gggagtgcag tcaaagggca ctacgactgc tgacggctct ggcagctgga
     2401 gcataaacct aagtggcgtc tccgagggag accacaccta cacggccagg gccaccgacg
     2461 ccgcgggcaa cacctctcct tcgtccacta ctgcggtgac tgtgaaggta gacacaaccg
     2521 cgcccaacgc tcccgtaatc gctagccctg ccaacaacac gatcaccaac gatgctaccc
     2581 cgaccttcag cggcaccgcg gaaggcagca gcacggtaga gatcttcgac ggtggcagtt
     2641 cgcttggcac gaccacggct gatggctcgg gtgactggag cttcacccct agtgcctctc
     2701 tgagcggtgc agtgcactca attaccgcta agaccgcgga tgcggcgggc aatatctctt
     2761 ctgcctccac agcgataaac ctgacggttg acaccgctgc gtccggtgct ccttcgatca
     2821 cgaaccccgc caacgacgcc attaccaacg acaatactcc gaccttcggc ggcaccgctg
     2881 aagccaacag cactgtggag ctcttcgatg gcagcacgtc gctgggtacg acgacggctg
     2941 atggctcggg cgactggagc tttacgcccg gggcttcttt gaacgaggga acacactcga
     3001 ttacggccac cgcagaagat gcggcgggta atacttcgac cgcctctaca gcgctcagca
     3061 tgaccatcga tacggtagct cccagcgctc cccagatcac ggctcccgcc aatgccgccg
     3121 ttaccaacga cgccactccc accttcagcg gcacggctga ggctaacagc acggtagaga
     3181 tcttcgacgg cagcac
//
LOCUS       DASVXZ010000306        15228 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_839921, whole genome shotgun sequence.
ACCESSION   DASVXZ010000306 DASVXZ010000000
VERSION     DASVXZ010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 15228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15228
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839921"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1302
                     /locus_tag="VF788_06270"
     CDS             <1..1302
                     /locus_tag="VF788_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017982571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_0567/sll0787 family protein"
                     /protein_id="HEX8933786.1"
                     /translation="DRAAYHRLRTRAFVHRQGLFAKHDHDDRDDDPRTLVLVARNAEG
                     AVLGGVRLGPVDGGPDLGWWFGGRLVVDPDCRIRGVGGALVRAACAYAENAGVLRFEA
                     TVQARNEVFFRRLGWTSVRPVTVAGTPHMLMRWPIDRIAALVNTTKAELGGLLSGLGP
                     GGVGYRGDDGAPVPGSDLVAACDAVLPSMVQRDPEWAGWCAVLVNVNDLAAMGATPVG
                     LLDALGARDRSFAARVLAGLRRASQAYDVAVLGGHTQLGVPAALSVTALGRAADPIRG
                     GGGRPGHRLRFTVDTAGGWRPGYAASQWDSTSHRRTPELQAMLGSVAAARPAGAKDVS
                     MAGLVGTAGMLAEASGCRAVLEVAAVPRPAAATVGDWFTCFPGFGMLTADEPSRPPPP
                     AAPAVSADCGELVAGRGVALRWPDGELTEVITDAATGLGAA"
     gene            1299..2192
                     /locus_tag="VF788_06275"
     CDS             1299..2192
                     /locus_tag="VF788_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017982573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEX8933787.1"
                     /translation="MSPLQMAAVAANFARDLEADFIQIERLINIARAEGVRLLALPEA
                     ALGGYLADLDGAAGAPPALDPNGPEIRRLARLAGDMVVAVGYCEQGPDQLFNSAVCVT
                     GDGVLGHHRKVHQPLREDASYGAGDSFSAFDTPVGRLGMMICYDKAFPESARTLALDG
                     ADVVMCLSAWPASRTNPTPTLEEDRWKRRFDLFDRARALENQIVWLSANQSGEFGSLR
                     FVASAKIVDPGGEILADTGVRAGLAVTKLDVQQALDSARRSMAHLRDRRPAAYTEPTL
                     RAWRAPDSVRQLRDHAQTRHR"
     gene            2194..3024
                     /locus_tag="VF788_06280"
     CDS             2194..3024
                     /locus_tag="VF788_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020638175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEX8933788.1"
                     /translation="MVAIRIGAVAAKFGRDLDFDLQRIATLIEHARQSGISLLVLPDA
                     ALGGYLGDLHRPDPAALPPALALDDAHVRKVAALAAEMVVCFGFCEADGDQRYNTALC
                     VHGGEVLGSHRKVHQPAGESIAYSAGDRFSAFDTPVGRIGMLIDYDKTFPESARTLTL
                     EGAEVLTCLSAWPTSLTNRAQRMAQDRQARLFDLYDQARAAENQVVLISSNQTGVLGE
                     LRFLGQAKVVGPGGEILARTWAKPGIAKAELDVPAEIAKARRVLRHLDERKPGIYRIG
                     "
     gene            3024..4118
                     /locus_tag="VF788_06285"
     CDS             3024..4118
                     /locus_tag="VF788_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_0565 family glycosyltransferase"
                     /protein_id="HEX8933789.1"
                     /translation="MSELSIALLTYSTKPRGSVVHALSLAEALAQAGQRVTVWALGRG
                     GDDAFFRPVDSLVEVRIVPFPDIAGEAVGPRIVRSIQVMAKAFDPAGYDVVHAQDCIS
                     ANAADRCVRTVHHLDHFTTPELAACHERAIVAPHAHICVSAAVAGELLDGWGITATVI
                     PNGVDAQRFSHAAGPAGAVVRATWRSRLDCYVLTVGGIEPRKGSLELLEAYALLHANL
                     PDVRLVIAGGETLFDYRNYRARWELRATQLGIEPVVLGPVDHDTMPALVAAAGVFAFP
                     STKEGFGLAAMEALAAEVPLVMSNLPVLREIFTGTARFADGTVELAAQLNAALTEPAT
                     GAQEAGRLLAARHTWSAAAQRHLDLYQRFG"
     gene            complement(4207..5190)
                     /locus_tag="VF788_06290"
     CDS             complement(4207..5190)
                     /locus_tag="VF788_06290"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8933790.1"
                     /translation="MPCDQLTQSDRHTPPGRHVLLTGATGFIGSAVARALVGQLDIEL
                     SVLVRCPARIPRTRQLLGDLTQPDSLVGSCQGIDTLLHTASCVGTDLEQCTAVNDRGT
                     TALLHEATRSGVRRIIYISTAAVYGQGPHRNVEPEQLTPAPRSPASRSRLAAEETIRA
                     AGGVVLRPHLIYGTGDRWFVPELIKLIKLLGDLPNADHVKVSTIAVDDLARALTGLVT
                     RSDALPPGTVLHANHPAPTVLRTMIDTVTRNVGLYGINRCTSRRQANKQIRANGNNEW
                     HLVRICTDHWYASQRIWQLAGQDPGPGFAETFPRYAPWYRIQLSKHQQEPP"
     gene            5356..6012
                     /locus_tag="VF788_06295"
     CDS             5356..6012
                     /locus_tag="VF788_06295"
                     /inference="COORDINATES: protein motif:HMM:NF041196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ScbR family autoregulator-binding transcription
                     factor"
                     /protein_id="HEX8933791.1"
                     /translation="MKQARAAVTREQILRGAAEVFDRYGYGAATLSDVIAQAGVTKGA
                     LYFHFSSKEDLARTVIEQQHALSVEPARQRLDEHAPGLESVIRLSQGLAGQLMNDVVV
                     RAGIRLTLEHGTFGASAANPYRDWVAVTEQLLRRAIDEGDLRDSIKPVALARLVVGAF
                     TGVQLLSEVLSGRQDLYQRVEEMWDILLPSLVSARKLPYFRGVAVTGPSRQGGKFGSP
                     "
     gene            complement(6004..7011)
                     /locus_tag="VF788_06300"
     CDS             complement(6004..7011)
                     /locus_tag="VF788_06300"
                     /inference="COORDINATES: protein motif:HMM:NF041195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ScbA/BarX family gamma-butyrolactone
                     biosynthesis protein"
                     /protein_id="HEX8933792.1"
                     /translation="MANMDTITVRGRRDGLGSQRARLSFSATVARHLVHRLAVSEVLL
                     TDWCRMGADAFVCAAQWSRSHSFYRVRDGRHDPLLLAETIRQVGLLLCHEAYQVPPEH
                     RFLMDRMTYVADLDGLAAGAVPAEIVLAVRAQELRRRTRSASAARFDVEFLRDETPIG
                     RGTGWVRCVGPLLYQRIRSPQCPPARVRDQQPPPVSPAQVGVVVADDVVLGQCRQPGQ
                     WPLRILTEHPVLFDHPLDHVPGMLVLEGMRQASRVALGWPDAQLTTCDIAFSRFIELA
                     EPSSVRATVGRRSAASASVMMVLAQAGHAAARGTVTVANISCAPAPDVPSCPALTGRS
                     R"
     gene            complement(7322..7678)
                     /locus_tag="VF788_06305"
     CDS             complement(7322..7678)
                     /locus_tag="VF788_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017982019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HEX8933793.1"
                     /translation="MEIWINPNCSKCHSALALLDAEGASYTLRHYLEAPPTALEIEDV
                     LRRLGLEPWDIARVTEPVAVELDLAAWPRQETDRTRWIEALVAHPILIQRPIITADDG
                     TAVVGRSPESVRSVLP"
     gene            7882..8841
                     /locus_tag="VF788_06310"
     CDS             7882..8841
                     /locus_tag="VF788_06310"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX8933794.1"
                     /translation="MTDVQHYLVGEHIEDFNSGLISRRELLRRVTLITGSIASALVWL
                     EVTGCQSEPSRQPPSPASRQASTPQPFATPPAEPAADGVTVQPDDPRITIAPMTVTGA
                     DGASLISYHARPASTEPAGGILVVHENRGLVPHIKDVVRRVATAGFSAVAVDLLSRQG
                     GADKLSDPAQYAAVLSKQDPGAMVSDLQRTLSALSAAGPGDRLGMTGFCFGGGMTWNA
                     LAAGTAVQAAVPFYGPPPKNLAGLASTKAAVLAIYAERDTRITSTKDEIAKQLSRTGR
                     PYQIKIYPGVDHAFHNDTGPRYNATQAEAAWIATINWFRDYVR"
     gene            8935..11124
                     /locus_tag="VF788_06315"
     CDS             8935..11124
                     /locus_tag="VF788_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8933795.1"
                     /translation="MSAPQITLTARLTTSALDARRGVVRLHQEVLDALGLRPWDAVRL
                     TGARSSAALAAAGQTAPGTALVDDLTLSNLGLTDGSEVVLAPVHVPAARSITFAGSAL
                     VSLAVSPETLRLALAGKVLTTGDAVSLLPQDVAPGSDATAVRSRLATAIGMTWTTELL
                     TVTATDPAGPVAPHPSTVVGWRDGQRTGEHRVQQAMPPSGPSSTTTEIPVLAVADLVG
                     AQDAAQRLAEWFELTFRRPELLRRLGASTRLGVAVHGPEGVGKATLVRAVARETGIHV
                     VELAAPSVAAVEPAAAAARVRDAVVAAGKQQPSVLLITDVEALLPATNPPPLATVVLD
                     SLSATVDGVALVVTTAHPESVDPRLGAPELVDRELSLGLPTARTRAEILRVLLSTVPL
                     ATDVDLAAVGERTPGFVATDLVALRREAAVHAALRHAADAGTDLTVTQRDLIDALDTV
                     RPISMSTSDTINTGGLTLDEVGDMTQTKQALTEAVLWPLRYPDSFTRLGVDPPRGVLL
                     YGPPGCGKTFLVRALAGSGGLNVFSVKGAELLDKWVGESERAVRELFRRARDAAPALI
                     FLDEVDALAPRRGGSSDAGVADRVVAALLTELDGVEPMRDVVVLGATNRPDLIDPALL
                     RPGRLERLVYVPPPDSPARAAILRSTARNTPLAADVDLDILATELEGYSAADCAALVR
                     EAALTAMRESLEATEVTAAQLAVAREAVRPSLDPRQLAELAGYAARR"
     gene            complement(11121..12197)
                     /locus_tag="VF788_06320"
     CDS             complement(11121..12197)
                     /locus_tag="VF788_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018687070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase"
                     /protein_id="HEX8933796.1"
                     /translation="MTDTPRLWMRHEVRLSERRAPIAPADARLLAEQGVAVTVEDTLQ
                     RIFPTSDYAAAGCRIAAPGSWVSAPGEDFIIGLKELPEEPAALVHRHVFFGHAYKAQG
                     GSRQLLRRFTEGGGTLLDVEYLVDARGHRLAAFGYWAGYVGAALAVLQHDGRLSAPLE
                     PSSKQSLDAQLAQSRSARSPRVLVIGAFGRCGRGAQAALAVAGITPTCWGLEQTWQLD
                     RTALLGHDILVNAVLITTPVPPFLTPADLEDPARRLTLVSDVTCDVTSACNMLPVNDS
                     TTSWSEPARRLHEGRRPLDIIAIDNLPSLLPREASIAFSADLMPHLTSLGSSARHWQR
                     CLRSFRTACHHAGLDSTGDRTALA"
     gene            complement(12230..12814)
                     /locus_tag="VF788_06325"
     CDS             complement(12230..12814)
                     /locus_tag="VF788_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytR C-terminal domain-containing protein"
                     /protein_id="HEX8933797.1"
                     /translation="MGTPRNPGGGRRLRTGGLALFGLAAIAAVIGLALAVHRAEQTTA
                     AQPPAVTPVYAPASPRPSVIAFPPPVVSSPAEAPALPVPAPPPDASEPVQSGGTNDRR
                     GDVRIYNNSTIRGLAARASSDLRAAGWTVVEVGNFARGTIPTTTVYYQEGTNERAAAE
                     AIAAQFGMRAEPRFPGISSVGPGVIVIVTNDYAH"
     gene            complement(12818..13114)
                     /locus_tag="VF788_06330"
     CDS             complement(12818..13114)
                     /locus_tag="VF788_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3263 domain-containing protein"
                     /protein_id="HEX8933798.1"
                     /translation="MDAAAALHPIEDQTGGLSCREGEMLVFERQWWRYAGAKEQAIRE
                     QFGCSATRYYQDLNNLIDRPEALAADPMLVKRLRRLRSGRQRARAARRLGAGSK"
     gene            13270..13869
                     /locus_tag="VF788_06335"
     CDS             13270..13869
                     /locus_tag="VF788_06335"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009084018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEX8933799.1"
                     /translation="MTVCPIRIVGDPVLHTPTRLVTEFDEALHSLVADMFDTMAAAQG
                     VGLAANQIGVDLRLFVYDCMGPQDVRYRGVVVNPVLETSERPETMPDPDDDWEGCLSV
                     PGESFPTGRASWAKVTGVDAEGAPVTVEGTGLLARCLQHETDHLDGILYLNRLVGRHA
                     REAKKMLKAQGWGVPGLAWDPAKQPAKQSDKQSDKQPTD"
     gene            14008..14928
                     /locus_tag="VF788_06340"
     CDS             14008..14928
                     /locus_tag="VF788_06340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX8933800.1"
                     /translation="MGVVDPLDSYSCTVSSVAAAITPHVASLRIGPGAGSAVIFADDG
                     LLLTNAHVVGGAHNGVAAFADGTESRFDVVGADPLSDLAVLRARGVTPAAAVLGDADE
                     LVVGQLVVAVGNPLGLAGSVTAGVVSGLGRSLPVRSGRAIRVIEDVIQTDAALNPGNS
                     GGALADADAKVVGINTAVAGFGLGMAVPINATSRRIIGALLADGRVRRGYLGVVGVPT
                     PLPTPVAQRTGQKSGLRLVEVIPGSPADRAGLRAGDLVLSAGRRPVTDAQGIQRQLFS
                     EAIGSRLPITVLRNGAMVDVITVPTELVAT"
     gene            15012..>15228
                     /locus_tag="VF788_06345"
     CDS             15012..>15228
                     /locus_tag="VF788_06345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933801.1"
                     /translation="MITPSQRGRFDWPWRGGPTFLTPDGSQVVLRSTVLHHTVLDTSR
                     PWSCNFVAMVRGARRTFTIAEAGAFDWH"
BASE COUNT         2377 a         5071 c         5244 g         2536 t
ORIGIN      
        1 gaccgagctg cctaccaccg tttgcgaacc cgggcgttcg tgcaccggca gggcctcttc
       61 gccaagcacg accacgacga ccgcgacgat gacccgcgca ccctggtgct cgtcgcgcga
      121 aacgctgagg gcgccgtgct cggcggggtg cgactcgggc cggtcgacgg cggacccgat
      181 ctgggctggt ggttcggcgg ccgcctcgtg gtggacccgg actgccggat ccggggcgtc
      241 ggtggagccc tggtccgggc cgcctgcgcg tatgcggaaa acgccggggt gctgcgtttc
      301 gaggcgaccg tgcaggcccg caacgaggtg ttcttccgcc ggttgggctg gacctcggta
      361 cgcccggtca ccgtggcggg caccccgcac atgctgatgc gctggccgat cgaccggatc
      421 gccgcgctgg tcaacaccac caaggcagag ctcggcgggt tactgtccgg cctgggtcca
      481 ggcggcgttg gctatcgcgg ggacgatggc gcgccggtgc ccggcagcga cctggtggcc
      541 gcctgcgacg cggtcctgcc ctcgatggtg cagcgggatc cggaatgggc gggatggtgc
      601 gcggtgctgg tcaatgtcaa cgacctggcg gccatgggcg cgacaccggt cggcctgctc
      661 gacgcgctgg gagcgcggga ccgctctttc gccgcccggg tgctagcggg attgcgccgg
      721 gccagccagg cctatgacgt cgccgtgctc ggcggccaca cccagttggg cgtacccgcc
      781 gcgctgtcgg tgaccgcgct gggccgcgcc gcggacccga tccgaggcgg tggtggccgt
      841 ccgggtcatc gcctgcggtt caccgtggat accgccggtg gatggcggcc cgggtatgcc
      901 gccagccagt gggactccac gtcacaccgc cgcaccccgg aattgcaggc gatgttgggc
      961 tcggtggcgg ctgcccgccc ggccggcgcc aaggacgtct cgatggcagg tctggtgggc
     1021 accgcgggca tgctcgccga agccagcggc tgccgggcgg tgctcgaggt agccgcagtg
     1081 cccaggccgg cagcggccac cgtcggtgac tggttcacct gcttcccggg cttcgggatg
     1141 ctcaccgccg acgaacccag ccgtccgccg ccgcccgcgg caccggcggt cagcgcggat
     1201 tgtggtgagc tggtggccgg ccgcggtgtg gcgctgcgct ggccggacgg ggagctgact
     1261 gaggtgatca cagacgcggc gaccgggctg ggagcggcat gagcccgctg cagatggccg
     1321 ccgtcgccgc gaacttcgcc cgggacctgg aggccgactt catccagatc gagcggctca
     1381 tcaacatcgc tcgtgcagag ggggtgcgcc tgctcgcctt gcccgaagct gccttaggcg
     1441 ggtacctggc ggatctggat ggcgcggccg gggcaccacc cgcattggac ccaaatggcc
     1501 cggagatccg caggctggct cgactggccg gcgacatggt cgtcgcggtc ggctactgcg
     1561 agcaggggcc ggatcagctg ttcaacagcg ccgtgtgcgt gacgggggat ggggtgttgg
     1621 ggcaccatcg caaggtgcac cagccgcttc gcgaggacgc cagctacggc gcgggcgaca
     1681 gcttctccgc cttcgacacc cccgtgggcc ggctcggcat gatgatctgt tacgacaagg
     1741 cgtttccgga atcagctcgg acgctggcgc tggatggggc ggacgtcgtg atgtgcctgt
     1801 cggcgtggcc ggccagccgc acgaacccca cgccgacgct ggaagaggac cgctggaagc
     1861 gccggttcga tctgttcgac cgggcgcgag cgctggagaa ccagatcgtc tggctgtcgg
     1921 cgaaccagtc cggggagttc ggctcgctgc ggttcgtggc cagcgccaaa atcgtcgacc
     1981 ctggcggtga aatcctggcc gacaccggcg tgcgggccgg cctagcagtc accaagctgg
     2041 acgtgcagca ggcgcttgat agcgcccgtc gctcgatggc ccacctccgc gaccgacgcc
     2101 cagcggccta taccgaaccc actctcaggg cgtggagagc acccgattcc gtacgacagc
     2161 tgcgggatca cgcccagaca cgccaccgtt gagatggtcg ctatccggat tggggcggtg
     2221 gcggcgaagt tcgggcggga tctcgacttc gatctgcagc ggatcgccac gctgatcgag
     2281 catgcacgcc agtcggggat ctcgctgctg gtgctcccag acgccgccct cggtggctac
     2341 ctcggcgatc tgcaccggcc cgatccagct gcgttgccgc ccgcgctggc actcgatgat
     2401 gcgcatgtcc gtaaggtcgc ggcgctggca gcggaaatgg ttgtctgctt cggtttctgc
     2461 gaagccgacg gggatcagcg ttacaacacc gcgctgtgcg tgcacggcgg cgaggtgctg
     2521 ggcagccacc gcaaggtgca tcagcccgcc ggcgaatcga tcgcatactc ggcgggtgac
     2581 cgtttctccg ccttcgacac cccggtcggt cggatcggca tgttgatcga ctacgacaag
     2641 acgttcccgg agtcggcccg cactctcacg ctggagggcg ctgaggtgct gacctgcctg
     2701 tccgcctggc ctaccagcct taccaaccgc gcgcagcgga tggcccagga ccggcaagcc
     2761 cgcctgttcg acctctatga ccaggccaga gcggcggaga accaggtcgt actgatctcg
     2821 tccaaccaga ccggggtact gggtgaacta cgtttcctcg ggcaggcgaa ggtggtcggg
     2881 cctggcgggg agatcctggc ccgcacctgg gccaagcccg gcatcgcaaa ggccgagctg
     2941 gacgtgccag ccgagatcgc caaggctcgc cgggtactgc ggcacctcga tgagcgcaag
     3001 cccggcatct accggatcgg ctgatgtcag aactgtcgat tgcgctcctc acctactcga
     3061 ccaaaccgcg gggcagcgtg gtgcacgcgc tctcgctggc cgaggcgctc gcccaggcgg
     3121 gccagcgggt gacggtgtgg gctctgggcc gcggcgggga tgatgccttc ttccgtcccg
     3181 tcgattccct ggtcgaagtg cggatcgtgc cctttccgga tattgccggg gaagccgtcg
     3241 gaccccgcat cgtgcgctcc atccaggtaa tggccaaggc cttcgacccg gcaggttacg
     3301 acgtggtgca cgcgcaggac tgcatcagcg ccaacgccgc cgatcggtgc gtgcgcaccg
     3361 tgcatcacct cgaccacttc accacgccgg agctggccgc ctgccacgag cgcgccatcg
     3421 tcgcgccgca cgcacatatc tgcgtgtccg ccgcggtcgc cggtgagttg ctcgacggct
     3481 ggggaatcac cgccacagtc atcccgaacg gcgtggacgc gcaacgcttc tctcacgcag
     3541 ctggcccggc cggcgcggtc gtccgggcca cgtggcgatc gcgcttggac tgctacgtgc
     3601 tgacggttgg tggaatcgag ccccgcaagg ggtcattgga gctgctcgag gcctacgcgc
     3661 tgctgcacgc gaacctcccc gacgtgcggc tggtgatcgc cggcggggag accctgttcg
     3721 actatcggaa ctatcgggcc cgctgggagc tcagggctac ccagcttggg atcgagccgg
     3781 tggtgctcgg gccggtggac cacgacacga tgcccgcgct ggtcgccgca gctggggtat
     3841 tcgcctttcc atcgaccaag gaaggcttcg ggctggccgc gatggaagcg ctggccgccg
     3901 aagtcccgct ggtcatgtcc aatctgccag tgctgcgtga aatcttcacc ggcaccgccc
     3961 gtttcgccga cggcacggtg gagctggcgg cacagctgaa cgctgcgctc accgaaccgg
     4021 ccacgggtgc gcaggaagcc ggccgcttgc tggccgcccg ccacacctgg tcagccgcgg
     4081 cacaacgcca cctggacctc taccaacgct ttggctgacc ccgcgtgggc gcttctcata
     4141 tcgcggcatg tgtcctcgga ccgatgctgc cgcaaggcct tatcttcggt gtcagtattg
     4201 gccagattag ggcggctcct gctgatgttt tgatagttgt attcggtacc acggcgcata
     4261 acgtgggaag gtctcggcga atccagggcc gggatcctgg ccggctaact gccagatgcg
     4321 ctgcgaggcg taccagtggt ccgtgcagat cctgacgagg tgccattcgt tattcccgtt
     4381 cgcgcgaatt tgtttgttgg cctgtctgcg ggaggtgcat cggtttatcc cgtacaggcc
     4441 gacattccgc gttactgtgt cgatcatggt gcggagtacg gttggggccg ggtggttggc
     4501 gtgcagcacc gtacccggtg gcagagcgtc ggagcgggta accagtccgg tcaatgcgcg
     4561 ggccaggtcg tcgaccgcga tggtggacac cttcacgtgg tcggcgtttg gcaggtcacc
     4621 gagcagcttg atgagtttaa tcagctcggg cacgaaccag cgatcgcccg tgccatagat
     4681 gaggtgcggt cgcaggacga ctccgccggc ggcccggatg gtctcttcgg ccgcgagccg
     4741 gctgcggctg gcgggtgatc gtggtgctgg cgtgagctgc tcgggttcga cattgcggtg
     4801 cggaccttgg ccgtacacgg ccgcggtgct gatgtagatg attcgccgca cgccgcttcg
     4861 ggttgcttcg tgtaacaggg cggtggtgcc ccggtcgttg accgcggtgc attgctccag
     4921 gtcagtcccg acgcaggagg ccgtgtgcag gagcgtgtcg atgccctggc aactcccaac
     4981 cagtgaatcg ggctgggtca gatcaccgag cagctgtcgt gttcgtggta ttcgggccgg
     5041 acagcgtacg agcacgctca gctcgatatc cagctgacca actagcgcgc gagccaccgc
     5101 gctgccgatg aatcccgtcg cgccggtgag caagacatgc cggcccggcg gagtgtgccg
     5161 atctgattgg gtgagttgat cgcacggcat cggtggtcgc acctggtgca cgcttacggg
     5221 tgtcccttcc gggactgata aggcagtccg cacgcgtacg gatgagagca agctttgtgc
     5281 tgttcgaaac aaacccgtcc ggtcccgtga tatcgtgcgc ccgtaattgt tattgcggcg
     5341 tggggacatc gtgtggtgaa gcaggctcgt gcagcggtaa cgagggaaca gattttgcga
     5401 ggcgcggccg aggtgttcga tcggtatgga tatggcgctg cgacactgag cgatgtgatt
     5461 gcccaggccg gcgtgaccaa gggggcgttg tacttccatt tcagttctaa agaggacctt
     5521 gcgcggactg tgattgagca gcaacacgcg ctgtcggtcg agccggcgcg ccaacgtctt
     5581 gacgagcacg cgcctgggct ggagtcggtg atccgcctgt cccagggctt ggccggccag
     5641 ctgatgaatg atgtcgtcgt tcgggctggt atccggctta cccttgaaca cggcacgttc
     5701 ggcgcatcgg ccgccaaccc gtatcgagat tgggtcgcgg tgactgagca attgctgcgc
     5761 cgcgccatcg acgaaggtga ccttcgcgat tcgatcaagc cggtggcgct ggccaggttg
     5821 gtggtcggcg cgttcaccgg cgtgcagttg ctctccgagg tcctgagcgg tcgccaggac
     5881 ctgtaccagc gggttgagga gatgtgggac atcctgctgc cctctttggt gtcggcccgc
     5941 aagctgccct actttcgggg tgtggcggtt accgggccct ccagacaggg tggcaagttc
     6001 ggttcaccgt gagcggcctg tcaaggccgg gcaggatggg acatccggtg ccggggcgca
     6061 gctgatgttg gcgacggtca cagtgccccg ggcggcggcg tggccagctt gggcgagcac
     6121 catcatcacg ctggcgctgg ccgcggatct ccgccccacc gtggcccgca ccgagctggg
     6181 ctcggcgagc tcgataaacc gggagaaggc gatatcgcag gtcgtgagtt gcgcgtccgg
     6241 ccagcccagg gccacccggc tggcctgacg catcccttcg aggaccagca ttcccggtac
     6301 atggtcaagt ggatggtcga atagcaccgg gtgctcagtg agaatccgca atggccattg
     6361 ccctggctgc cggcactgac cgagtaccac gtcgtcggcg acgaccacgc cgacctgcgc
     6421 cggtgacact ggtgggggct gctggtctcg caccctcgct ggtgggcact gtggcgatcg
     6481 gatgcgctgg tacagcagcg gcccgacgca gcggacccaa ccagtgcccc gtccgatcgg
     6541 ggtctcgtcg cgaagaaact ccacatcgaa ccgcgcagca ctggctgatc gcgtgcggcg
     6601 acgcaactcc tgagcccgca ccgcaagcac gatctctgca ggtacagcac cggccgccag
     6661 gccatcgaga tcggcaacgt aggtcatccg gtccatcaag aatcgatgct ccggtggcac
     6721 ctgataggcc tcgtggcaca gcagcaggcc aacttgccgg atcgtctcgg ccagcaacaa
     6781 cggatcatgt ctgccatcgc ggacccggta gaaactgtgg ctacgcgacc attgagccgc
     6841 gcacacaaac gcgtccgcgc ccatccggca ccaatcggtg agcagcacct ccgacaccgc
     6901 aagccgatgc acgagatgcc gcgcaacagt ggcgctgaac gacagtcgag cgcgctgtga
     6961 ccccaggcca tctctcctgc cgcgcacggt gatcgtgtcc atattcgcca tgccgcctcc
     7021 ctcagacaac gcgcctcaga ccacgtaaac agcatcaggg tgtcagaaat aaaaccgacc
     7081 accatgttct ttagtgtgat ctgcacctca cctggtcgac ctaacgatga gatttcgggc
     7141 ctagcctggc ctcaccgacc cgagaactta gctttgttgg tgttgacaaa acggggcgtt
     7201 tggtttgata tagagagggg atcaggaggg ggccgtgagg ttgggctggc ggtgcaccgc
     7261 cagcccaaca tgagttctgc cgcccaaaga tgattcttcg ttcaaggatg ggcgtggtcg
     7321 cctatggcag gacagagcgg accgattccg gtgagcggcc caccaccgcg gtcccgtcgt
     7381 ctgcggtgat gattgggcgc tggatcaaaa tcggatgggc gaccaaggcc tcgatccagc
     7441 gcgtgcggtc agtctcctgg cgcggccacg ccgccagatc cagttcgacc gccacgggtt
     7501 ctgtgacgcg ggcgatgtcc cagggctcca agccaagccg ccgtagtacg tcttcgatct
     7561 ccagggcagt gggcggtgct tccaggtagt gccgcagcgt gtacgaagcg ccttccgcgt
     7621 ccagcagagc taacgcggag tgacacttgg aacagttcgg attgatccaa atttccataa
     7681 tccttagtct ttcgattcac ctgccgcacc gttatggccg ctaccgcgac gttgccatcc
     7741 tcccagatca gcttgatctc atgctctcct gccgatgacc agaccttcgg cctactgtgg
     7801 gacatcgacg accccccgaa gcccgggttt caatgtggag caccacagtc cagcaggcgg
     7861 tgccgctgtg agaggtatct gatgaccgac gtccagcact acctggtcgg ggagcacatc
     7921 gaagatttca attctggatt gatcagccgg cgggagttgc ttcgccgggt gaccctgatc
     7981 accgggagca tcgccagcgc cttggtgtgg ctggaagtga caggttgcca gagcgagccc
     8041 tccagacagc cgccctcgcc agcatcccgg caagccagca cgccgcaacc attcgccacg
     8101 ccgcccgccg aacccgctgc ggacggggtg accgtgcaac ccgacgatcc ccgcatcacc
     8161 atcgcgccga tgacggtgac cggtgcagat ggtgcatccc tgatcagcta ccacgcccgg
     8221 ccggccagca ccgaaccagc gggtggcatc ctcgtggtcc acgagaatcg tggtctcgtt
     8281 ccgcacatca aagacgtggt ccggcgggtg gccactgccg gtttcagtgc cgtcgccgtt
     8341 gatcttctgt ctcgtcaagg cggagccgat aagctcagcg acccagccca atatgccgcc
     8401 gtgctgagta agcaggatcc cggggcgatg gtgtcggatc tgcagcggac gttatccgcg
     8461 ttgtcagcag ccggcccggg agaccggctt ggcatgactg gtttctgttt cggtggtggt
     8521 atgacctgga atgcgctagc agcggggacc gccgtccagg ctgcggtgcc cttctacgga
     8581 ccaccgccaa agaatttggc cggactggca agcaccaagg ccgcagtgct cgccatctac
     8641 gccgagcggg acacccgaat taccagcaca aaagacgaga tcgcgaagca gctaagccgc
     8701 accggccgtc cgtaccagat caagatctat cccggagtag accacgcgtt tcacaacgac
     8761 accggtccgc gctacaacgc gacccaggcg gaagctgctt ggatcgccac catcaactgg
     8821 ttccgcgact acgtgcgcta aggcatcctg ccccgtgagt ggcattacga cctatagctc
     8881 gtaatgccac tcacggggcg aggacggcgt cgacgtggca ttaggctcgg cggcgtgagc
     8941 gcgccgcaga tcacccttac cgccaggctc accacctcgg cgctggacgc gcggcgaggc
     9001 gtcgtgcggc tgcaccagga ggtgctcgac gcgctgggct tgcgaccgtg ggacgccgtg
     9061 cggctgaccg gggctcggtc cagcgccgcg ctggccgcag ctgggcagac cgcacccggc
     9121 acggcgctgg tcgatgacct gacgttgtcc aatctggggc tgaccgacgg atccgaggtg
     9181 gtgctcgcgc ccgtgcatgt gccggcggcc cgctcgatca ccttcgccgg atccgcgctg
     9241 gtcagcctgg cggtgagccc cgagacactg cggctcgcgc tggccggcaa ggtgctgacc
     9301 accggagacg cagtatccct gctgccgcag gacgtggccc caggatcgga tgccaccgcc
     9361 gtgcgtagcc ggctcgccac cgcgatcggg atgacctgga ccaccgagct actcaccgtg
     9421 acggccaccg accctgccgg tcccgttgcc ccgcacccct ccacggtggt cggctggcgg
     9481 gacggccagc gcaccggtga gcatcgggtg cagcaggcca tgcctccgtc cgggcccagc
     9541 agcacgacga ccgagattcc cgtgcttgcc gtggcggacc tggtgggtgc gcaggacgcc
     9601 gctcagcggc tggccgagtg gttcgagctc acctttcgcc gccctgaact actccgcagg
     9661 ctcggggcaa gcacccgcct cggggtggcg gtgcatggtc ctgagggcgt agggaaggcc
     9721 accctggtgc gggcggtggc ccgcgagacc ggaatccatg tcgtcgagct ggcagcaccc
     9781 agcgtagcgg cagtggagcc agcggccgcc gctgcgcggg tgcgcgacgc ggtggtggcc
     9841 gccggcaagc agcagcccag cgtactgctg atcaccgacg tcgaggcgct gctgccggcc
     9901 accaacccgc cgccgctggc cacggtcgtg ctcgactcgc tgagtgccac ggtggacggc
     9961 gtcgcgctgg tggtgaccac cgcgcacccc gaatcggttg atccgcggct gggcgcgccg
    10021 gagctggtcg atcgcgaact gtcgctggga ctgcccactg cccgcacgcg tgcggagatc
    10081 ctccgggtgc tgctcagcac ggtgccgctg gccaccgacg tcgacctggc ggccgtcggc
    10141 gagcgcaccc cagggttcgt ggccaccgat cttgtcgcgc tgcgccgcga ggcagcggtg
    10201 cacgccgcgc tgcgccacgc ggccgatgcc gggaccgacc tcacggtcac ccagcgggac
    10261 ctgatcgacg cgctggacac cgtccgaccc atctccatgt cgacgtcgga caccatcaac
    10321 accggtgggc tgaccctgga cgaggtcggc gacatgaccc agaccaagca agcgctcacc
    10381 gaggcggtgc tgtggccgct gcgctacccc gattcgttca cccggctcgg cgtcgatcca
    10441 ccgcgcgggg tgctgctcta cggcccgccc ggctgcggca agaccttcct ggtccgggcc
    10501 ctggccgggt cgggtgggct caacgtgttc tccgtgaagg gggccgagct gctggacaaa
    10561 tgggtcggcg agtcggaacg ggccgtgcgg gagctgttcc ggcgggcccg cgacgcggca
    10621 cctgcgctga tcttcctcga cgaggtcgac gcgctggctc cccgccgcgg cggctcctcc
    10681 gacgccggcg tcgccgaccg ggtggtggcc gcactgctca ccgagctgga cggggtggag
    10741 ccgatgcgcg atgtggtcgt gctcggcgcc accaaccgtc ccgacctcat cgacccggca
    10801 ctgttacgcc ccggccggct ggaacgcctg gtgtacgtgc cacccccgga ttcgccggcc
    10861 cgcgcggcaa tcctccgctc gacggcgcgc aacaccccat tagccgctga cgtcgacctt
    10921 gacatactgg ccacagagct ggagggctac tccgcggccg actgcgcagc gctggtacgc
    10981 gaggccgcgc tgaccgccat gcgggagtcc ctggaggcca ccgaggtgac ggcggcacag
    11041 ctggccgtcg cccgcgaggc cgttcgcccg tccctggacc cgcggcaact cgctgagctg
    11101 gccggctacg ccgcacgacg ttaagccaac gccgtgcgat cgccggtgga gtcaagtccg
    11161 gcgtggtggc aggcggtgcg gaaggagcgc aggcaacgct gccagtgccg ggcagagctg
    11221 cccaacgagg tcaggtgcgg catgaggtcg gccgagaagg cgatgctcgc ctcgcgcggc
    11281 agcagcgagg gcaggttgtc gatggcgatg atgtccagcg gccgccgacc ttcatgaagt
    11341 cgccgcgcgg gctcagacca gctcgtggtg ctgtcgttga cgggcagcat gttgcaggcc
    11401 gacgtgacgt cgcaggtgac gtcggagacg agcgtcaggc ggcgagcggg atcctcaagg
    11461 tccgcagggg tgaggaatgg cggtactggt gtggtgatca gcacagcgtt gacgaggatg
    11521 tcgtgcccga gcagggcagt ccggtccagc tgccaggttt gctcaaggcc ccagcaggtc
    11581 ggcgtgatgc cggccacggc gagtgcggcc tgcgcgccgc ggccacaccg cccgaaggcg
    11641 ccgatgacca gcactcgggg tgacctcgca ctgcgcgact gcgctaactg cgcgtccagc
    11701 gattgcttcg atgagggctc cagcggcgcg cttagccggc catcgtgctg tagcactgcg
    11761 agtgcggcgc cgacatagcc cgcccagtac ccgaaggcgg cgagccggtg tcccctggcg
    11821 tccaccagat actccacgtc gagcagggtg ccgccgcctt cggtgaaccg gcgcaacagc
    11881 tgccgggaac cgccctgcgc cttgtaggca tgcccgaaaa acacgtgccg atgaacgagc
    11941 gccgccggtt cttccgggag ctccttcaaa ccgatgatga agtcttcacc gggcgcgctg
    12001 acccagctgc ccggcgcggc gatccggcat ccggccgcgg catagtccga ggtcgggaag
    12061 atccgttgca acgtgtcctc aaccgtgacc gcgacaccct gctcggccag gagccgggca
    12121 tcggcaggcg cgatcggcgc gcgacgttcg cttaagcgca cctcgtggcg catccatagc
    12181 cgcggggtat cggtcatgtc gtctcgttct cttcagccca ccgcgatgat cagtgggcgt
    12241 agtcgttcgt cacgatcacg ataacgccgg ggcctacact ggaaatgccc gggaatcggg
    12301 gctcggcacg catgccgaac tgggcagcga tcgcctccgc cgcggcgcgc tcgttggtgc
    12361 cttcctggta gtagaccgtg gtcgtcggga tcgtcccccg ggcgaagttg ccgacctcga
    12421 ccaccgtcca gccggcggcg cggagatcac tcgaggcccg cgcggccaaa ccgcggatgg
    12481 tgctgttgtt gtagatccgc acatcaccgc gccggtcgtt ggtacctccg gactgcactg
    12541 gctcgctagc gtccggcggt ggtgcgggca ccggtagtgc aggagcttcg gccgggctcg
    12601 acaccaccgg gggtgggaag gcaatgacgg atgggcgcgg cgacgcgggc gcgtagaccg
    12661 gggtgacagc gggaggctga gcggccgtgg tctgttctgc acggtggacg gccagcgcca
    12721 atccgatcac agcagcgatc gcggccagac cgaacagagc taacccaccg gtgcgcaacc
    12781 ggcgaccgcc tccggggttt ctcggcgtgc ccatgaccta cttcgagccg gcaccgagtc
    12841 ggcgagctgc ccgtgctcgt tgccggccgg agcgcaaccg ccgcaaccgt ttgaccagca
    12901 tcggatccgc ggcaagcgcc tctggccggt cgatcaggtt attgaggtcc tggtaatacc
    12961 gcgtggcaga gcagccgaac tgctcgcgga tcgcctgctc cttggctccg gcatagcgcc
    13021 accactgccg ctcgaagacc agcatctcgc cctctcggca actcaggccc ccggtctgat
    13081 cctcgatcgg gtgcagggcc gctgcggcgt ccattgcgct cctcgggcat ctctcaaatc
    13141 ttaggcgtcc cgcaaatcac agtcgtgtga ttcttccagg cattgaacca cgcgcctgcc
    13201 ccgggggtgg cggcgacgca ccctccccag cgctcgcggc ggcgtcggcc acgattactg
    13261 ttgagcatca tgactgtctg tccgatccgc atcgtcggtg acccggtgct gcacactcca
    13321 accaggctcg ttactgaatt cgacgaggcg ctgcactccc tggtcgcgga catgttcgac
    13381 acgatggcgg cggctcaggg cgtcgggctc gccgcgaacc agatcggtgt cgatctgcgc
    13441 ctgttcgtct acgactgcat gggtccgcag gacgtccgat accggggtgt ggtcgtcaac
    13501 ccggtgctgg aaaccagcga acgtccagag accatgcctg acccggatga tgactgggaa
    13561 ggttgccttt cggtgcccgg tgagtccttt cccactggcc gggccagctg ggcgaaggtc
    13621 accggtgtcg acgccgaggg cgcaccggtg accgtggagg gcaccggctt gctggcccgg
    13681 tgcctccagc acgagaccga tcacctcgac gggatcctct acctcaacag gctggtcggt
    13741 cggcacgccc gtgaggcgaa aaagatgctc aaggcccaag gttggggcgt gcccgggctg
    13801 gcctgggatc cggccaagca acccgccaag caatccgaca agcaatccga caaacaaccc
    13861 actgactgag cacacctgcc ggccggctcg gccggagctc ccgggagctg tttcgagcgg
    13921 gcgtgcgggg cgctcgccac tggaacaccg gccattgttg caacgttgct agttcagcaa
    13981 cggtgtaatt ctgttaggtc agaggcggtg ggcgtcgtgg accccttgga ctcctactcg
    14041 tgcacggtca gctcggtggc ggcagcgatc accccgcacg tcgccagcct gcggatcggg
    14101 ccgggcgccg gatcggccgt gatcttcgcc gatgacggat tgctgctgac caacgcgcac
    14161 gtcgtgggcg gcgcgcacaa tggcgtcgcg gcgtttgccg atggcaccga gagccgcttc
    14221 gacgtggtgg gcgccgaccc tctgtccgac ctcgccgtcc tccgtgcccg cggcgtgacg
    14281 ccggctgcgg ctgtcctcgg cgacgccgac gagctggtcg tcgggcagtt ggtggtcgcc
    14341 gtcggcaatc ccctggggct cgccggatcg gtgaccgccg gggttgtcag tgggctgggt
    14401 cgctccctac cggtgcgctc gggccgggcc atccgggtga tcgaggacgt gatccagacc
    14461 gacgccgcgc tgaaccccgg caattccggt ggcgcgctcg ccgacgcgga cgcgaaggtg
    14521 gtcgggatca acaccgcggt cgccggcttc gggctcggca tggcagtgcc gatcaacgcg
    14581 acgagccgcc ggatcatcgg cgcgttgctg gctgacggcc gggtgcgccg cggttacctc
    14641 ggggtggtcg gagtgcccac cccgttgccc acgccggtcg cgcagcggac cggccagaaa
    14701 tcgggccttc gcctggtgga ggtcatccca ggcagccccg ccgaccgggc cgggctgcgc
    14761 gctggggacc tcgtgttgag cgcgggacgc cggccggtca ccgatgcgca gggcatccag
    14821 cgtcagctgt tctccgaggc catcggttcc cggttgccta tcacggtgct ccgcaacggc
    14881 gcgatggtgg atgtgatcac ggtgccgacc gagctggtcg cgacctgagg acacgccgta
    14941 actgaccgct ggcacgcagc taaggcgcat gtgcgagtat cgcccgcagt gtccgggctc
    15001 aggagtcgca tgtgatcaca ccctcacaac gcgggcggtt tgactggccg tggcggggcg
    15061 gtcccacgtt cctcaccccg gacggctctc aggtggtgct gcgtagcacg gtgctacacc
    15121 acaccgtgct cgacacgtcc cggccatggt cgtgcaactt cgtcgccatg gtgcgcggtg
    15181 cccgccggac cttcaccatc gcagaagccg gtgccttcga ctggcaca
//
LOCUS       DASVXZ010000307         9564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_480928, whole genome shotgun sequence.
ACCESSION   DASVXZ010000307 DASVXZ010000000
VERSION     DASVXZ010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9564
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480928"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VF788_06350"
     CDS             complement(<1..769)
                     /locus_tag="VF788_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933802.1"
                     /translation="MASRRQELSQRRKAVGFTQESLAEYLGVERSTVIRWEAGDSEPL
                     PSIRPNLARALQVSIDQLAELLTTSEIAATTQTLSTDLEVAIPAPLLEIQPPGRLDEA
                     EFENSMHPQVAETVEALRRALRSAGVSAEDLAAMLLVGGSSQVPLVVPGPDVSEPPHT
                     GSLNGPSIPGVRSKKTKRLLAAGAFALALPVFWWSAPFVISHSSAVPRVVAETPEHAD
                     PVGAIRAPNHGAGRDNNAGSADSAGARFTPSPAIVDTS"
     gene            complement(1717..3072)
                     /locus_tag="VF788_06355"
     CDS             complement(1717..3072)
                     /locus_tag="VF788_06355"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8933803.1"
                     /translation="MLSGAHPCDQPASGTTAPGSRAGGGPGASDPGSVTFDCATLTVP
                     LDHAGLRTGPKSDGQLTLQIAMADNADAPRGVLVFLTGGPGQPAVPFAASVASGLVDP
                     AVLRDYRLVLIDQRGTGEGALQCPQLQQVMGSSDLTVPPASAVQACAEAIGEIRRFFT
                     TADTVADLDALRQALGVEKLSLDGVSYGTFVAARYAVTHPDRVSRLVLDSVVPHDDVD
                     PLELAGIRRTAEVLRMVCAETGCPTDPAQDLSEVVRARHDGPELFDTLTDLSIGGPRL
                     DDIPAALHDAVRGNYTKLDEIVATEHRNQAATAFELSQGLHASTLCEDLRGPWGDAAT
                     PVAGRAAATQKAVAALPDAAVFPYDRATAAGNGISVTCQEWPATPVVPFPAGRNLPAV
                     PVLLLAGDHDLSTPLQWAQQEAAHAPLGHLVVIPGAGHSTQSSSNGPMGRAAVTEFLT
                     H"
     gene            complement(3066..3212)
                     /locus_tag="VF788_06360"
     CDS             complement(3066..3212)
                     /locus_tag="VF788_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933804.1"
                     /translation="MGGQVTIRVCNFDVGSSWLFSPHSSVAAARRTKDLLRTKDLLRT
                     RLRC"
     gene            3315..3758
                     /locus_tag="VF788_06365"
     CDS             3315..3758
                     /locus_tag="VF788_06365"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX8933805.1"
                     /translation="MKVEEILKSKGRSVETIEADASIAEAIGRMNGPPQIGALVVPDE
                     LGQRPFTGTLTERDIIRALGKYGAKLLTMRVTDVMSRNVPTCSPQDSIARLMQQMTTS
                     RYRHLPVVDRGTLTGLVSIGDVVKARIADMELETGLLRDLYIARG"
     gene            complement(3787..5244)
                     /locus_tag="VF788_06370"
     CDS             complement(3787..5244)
                     /locus_tag="VF788_06370"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose/sorbosone family PQQ-dependent
                     dehydrogenase"
                     /protein_id="HEX8933806.1"
                     /translation="MPRQSCSRHFLQAKRLVAIAALLALTVTGCASARQQQPPGAVGP
                     GEPFTFRVLTTGLADPYEITMGPDGFLWVTEKTGKRVTRVNPSDGSKSTVATIADVYS
                     TESQDGLLGMAFQGNFLKGSNDVYLAYTYDADPGTAVDRRAKIARYTYDPAAHTLSQP
                     MDLITGLPASTDHNSGRLLVGADQKLYYSIGDQGNNQFQRFCNPIRAQDLPTADDVRT
                     KNWATYVGKTLRLNFDGSIPPDNPTIRGVQSHIYSYGHRNPQGLVVGPGGRLFSAEHG
                     PKADDEINLIQAGKNYGWPYVSGFRDDQSYVYGNWSASTAGPCASLHYDNFAIPPFIP
                     QQRETAWNSPDYTEPLKTLYTVPNGYNFKDPACGDQAYICWPSIAPSSMDYMPADKGG
                     FDGWRNSLLVTSLKNGALYCLRLTQDGGSVQGDITQFFKTTNRYRDLALSPDYRTVYI
                     ATDSMGLSGPKFGPPTEKLADPGAILAFTFTGPSR"
     gene            complement(5326..6144)
                     /locus_tag="VF788_06375"
     CDS             complement(5326..6144)
                     /locus_tag="VF788_06375"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX8933807.1"
                     /translation="MSGQASEMVIPVRDVNPVLRTPWVTYALIMANVVVFLLTPGAAT
                     TVTGASSLAQSCQQQAFFDRYAAIPAELTSNRPLELVADGRIGADEQGPGCVIAEPSY
                     HKNPVLSALTSLFLHGSWLHLLGNMLFLWIFGNNIEDRFGRLRYLLFYLACGMVATYG
                     FALANPQSSEALIGASGAIAGVLGAYLILYPRARVWSLVPVLLFLPLRLPAWLVLGLW
                     FLLQWAYTAGYAISQGGSVAYLAHVLGFLVGALVALVVRGSEGSRDALASHPYR"
     gene            6284..8185
                     /locus_tag="VF788_06380"
     CDS             6284..8185
                     /locus_tag="VF788_06380"
                     /inference="COORDINATES: protein motif:HMM:NF012242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8933808.1"
                     /translation="MGYSLGVDLGTTFVAAAIATATRVTMVKLGNQSVVIPATVYLRE
                     DGTLVTGEAASLQAVSNPDRIGIEMKRRLGNPTPVELGGEPYNVTALLGALLQDVIQK
                     VIDTEGAPPERLMLTHPANWGPFRRTLFEEVPQFAGLDNPPAVTEPEAVTAHYATSRT
                     LADGATMAVYDLGGGTFDATILRTQPGGIEILGIPDGIDRLGGVDFDEAILSYVDYVA
                     DGALSGLDMRDPQAGTALSRLRQECMLAKEALSAQSETVIPVSLPDRQFDVRFTRSTF
                     EEMVRGPIESTIAALTRTLESAQVKPAELSAVLLVGGSARIPLIARMLSAELGRPTVV
                     DKEPKCAVALGAATLAAKVPVPTVGTIFSTRYQRSGAVPPAPEPLPADVVTEPPATAL
                     RPLAEETDPSLTTPAHRAPTPIGRQRRPWLLIVFTAALAITLGGLGFVLLKPVTVGAS
                     IKAPGLMLSTCQVKIDETYTAIASGFEPGENVRFSWTGPTIGVMGAFPADSGGNRSPG
                     GIVEKDPPGTYAIIATGLRSGRTTSAGLVVADADAARLKLSSCQAKIGDRYTATASGF
                     EPGENIRFSWTGPTNGVMGIFLADAAGAGSHGETLTKNPTGTYTITATGLRSGRIASA
                     GLQVLPGGR"
     gene            8333..8833
                     /locus_tag="VF788_06385"
     CDS             8333..8833
                     /locus_tag="VF788_06385"
                     /inference="COORDINATES: protein motif:HMM:NF039977.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6069 family protein"
                     /protein_id="HEX8933809.1"
                     /translation="MFTSRQPFYARFGYARSGSDRSGGVVDGRRLWTSGAVTAVIVFG
                     LAIAAFLLVHGMLNYPLLGVRGGGAVVYASMFGYAGGAALVAMLATAAMRFLLLSTPR
                     PRWFFGWLGGVGTAIAVLLPLALSQDAAARLATAMVNLVLGLVIIGLVRSTAASLRLD
                     GSAELP"
     gene            complement(8867..>9564)
                     /locus_tag="VF788_06390"
     CDS             complement(8867..>9564)
                     /locus_tag="VF788_06390"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR03557 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEX8933810.1"
                     /translation="LGLGSGENLNEHVVGRGWPSVTVRHEMLVEALRIIHALFDGGYV
                     TRRSHYYQVDSAKLWDLPTQRVPIAVAVSGAQSCELFGPLADHMIAVEPNAELATMWD
                     AARPGKGTSRRIGQLPVCFDADRETAIARAHEQFRWFGGGWKVNAELPSTAGFAAANQ
                     FVRPDDISESISCGPDVDMHVAAARPFAEAGFTDLALVQIGGAPKHQQPFLDYARDQL
                     LPTMRAEFTTGQP"
BASE COUNT         1676 a         3108 c         3119 g         1661 t
ORIGIN      
        1 cagatgtgtc aactatggcg ggggatgggg taaacctggc tccggcggag tctgcgctgc
       61 cagcgttgtt gtcccggccg gcgccatggt tgggtgcccg gatggcgccc accggatctg
      121 catgctccgg ggtctcggcg acgacgcggg gaacagcgct gctgtgcgaa atcacgaacg
      181 gtgcggacca ccagaacact gggagagcaa gagcgaaggc gcctgcagcc agcaaccgct
      241 tcgtcttttt cgacctgacc ccgggtatag atggcccgtt cagcgaccca gtgtggggag
      301 gctcggagac gtcgggtccg ggcacgacga gcggcacctg ggacgagcca ccgaccagga
      361 gcatcgcggc gagatcctcg gcactgacgc cggcggatcg cagcgcccgg cgcaacgcct
      421 ccacggtctc ggctacctgc gggtgcatcg agttctcgaa ctcggcctcg tccagccgtc
      481 ccggcggctg aatctcgaga agaggcgccg ggatcgccac ttcgagatcg gtcgaaaggg
      541 tttgcgtcgt agccgcaatc tcagacgtgg tgagtagctc ggcgagctgg tctatcgaca
      601 cctgaagggc gcgggccaga ttcgggcgta tcgatggaag cggttcgcta tctccggcct
      661 cccaccggat gaccgtcgag cgttctactc ccagatactc agcgagcgac tcttgagtga
      721 acccgaccgc tttgcggcgc tgagaaagct cctgccgtct agatgccatg tcgccacctc
      781 tcgctgagag cgtttccgca gttcaacaca cctcatgcgg cactgatgcg tcagtgatgc
      841 gcctgtcgcg ctctggttgc ggcccgctac gcacggttgt ctgaagaaca cgttccgcac
      901 tctacgcacc gcaacggagg caccgccatt gcccgatgga ggacggtaat gagcggccgc
      961 cgcggcagcg actgagctgc gccgaactag gccggtccgg cgacaggcct cctcacaagt
     1021 cgtcgcgcgc cggccttcca ccctgcacgg ggctgcgctg cggccccgtg caggggctca
     1081 cagtcacccc acaaatgtag ctgtcctccc ggagtacctc attcagctca gcgagagtgc
     1141 atggctgaga tatgtggaaa atgagctgtg aagctgacga ttaatcccca gtccaccagg
     1201 gatcctgaat aggacgagac ctccttcgcg aaacatggag gcgaggtagg gaatgtgata
     1261 gtcgagaatt tactagtgca gagctaatgt tgcatccgcc tagccagggt ggccaccgta
     1321 aattgatcac gctatccggt gcagttgctc tagcgggcgc tatgttcctt tcaccggtcc
     1381 tgaccccgca ggccgctgcg tcaccactgc cagcttcgga ggcgggctca ccgatcagct
     1441 ctgcacaggt gagcaattac cacagcactt ggccaccggg ttcatgggaa tatcggcagg
     1501 gttaccgcaa cagataccgc gacggcagcc gagacgggtg ggccgagggc aagcgggact
     1561 gcaagcaggg acaccggcac agtttttgag atagatcaac cggctctgat tacgatcgcg
     1621 gttacgccga aggctacgat cgcgggttcg tgctgggctt cgatcgagcc atcaggcagt
     1681 tctgcaggta atccggccag cgcatcagcg ctgcgttcag tgggtcaaga actcggtgac
     1741 ggcggctcga cccatcggac cgttgctgct ggactgggtc gagtggccgg caccggggat
     1801 gacaacgagg tgacccagcg gagcatgcgc ggcctcctgc tgggcccact gcaacggggt
     1861 ggacaggtca tggtccccgg cgagcagcag caccggaacc gcaggcaggt ttcgaccggc
     1921 cgggaacggc accaccggcg tggccggcca ctcctggcag gtcaccgaga ttccgttgcc
     1981 ggccgcggtg gcccggtcgt aggggaacac tgccgcgtcc ggtagcgcgg cgaccgcctt
     2041 ctgggtcgcc gcggcccggc cggccaccgg ggtggcggca tcgccccatg gcccacgcag
     2101 gtcctcgcat aacgtgctgg catgcaggcc ttggctgagc tcgaaagccg tagcggcctg
     2161 attgcggtgc tcggtggcga cgatctcgtc cagcttggtg tagttgcccc gcaccgcgtc
     2221 gtgtagtgca gctggaatgt cgtccagcct cggcccgccg atgctcaggt cggtcagggt
     2281 gtcgaacaac tcaggcccgt catggcgggc ccgcacgacc tcggacaagt cctgcgcagg
     2341 atcggtcgga catccggttt ccgcacagac catccgcagc acctccgcgg tgcgtctgat
     2401 cccggccaac tccagcggat ccacatcgtc gtgtggcacg accgagtcca gcaccaggcg
     2461 ggacacccgg tcggggtgag tgaccgcgta acgtgcggcg acgaacgtgc cgtacgagac
     2521 gccgtcgagg ctgagctttt ccacgcccag cgcctggcgt agcgcatcga ggtccgcgac
     2581 ggtgtcggcc gtggtgaaaa accgccggat ctccccgatc gcctcggcac aggcctgcac
     2641 cgcgctggct ggtggcacag tcaggtcgga gctacccatc acctgctgca gttgcggaca
     2701 ctgcaacgcc ccctcgccgg tgccacgctg gtcgatgagg accagccggt aatcgcgcag
     2761 tactgccgga tcgaccagcc cgctggccac gctggcggcg aacggcaccg ccggttggcc
     2821 aggaccaccg gtgaggaaga ccagcacacc gcgcggagcg tccgcgttgt cagccatcgc
     2881 gatctgcaac gtcagctgac catcggattt cggtccggta cgcagcccgg catggtccag
     2941 cggcacggtc aacgtcgcgc agtcgaacgt gacgctgcca ggatcgctgg cgccggggcc
     3001 gccaccggca cgggaaccgg gtgcggtggt gccggatgcc ggctgatcgc aggggtgggc
     3061 accgctcagc accggagccg ggtccgcagc aggtccttgg tgcgcagcag atccttggtg
     3121 cgccgtgctg cagccactga ggagtgcggc gagaacagcc aggatgaccc gacgtcgaag
     3181 ttgcacaccc ggattgtgac ctgacccccc accagcggtg aggtcggtat cacacggatg
     3241 cccgggcatc ttccctgttg ggctgcttcc ccgcgaggga cgatacaagg acctgcgtca
     3301 tcgggagggg actaatgaag gtcgaggaga tcctgaagtc gaagggccga tcggtcgaga
     3361 ccattgaggc cgatgccagc atcgctgaag cgataggccg gatgaacggc ccaccacaga
     3421 tcggagcgtt ggtcgttcct gacgagctgg ggcagcggcc atttaccggc acgctgactg
     3481 agcgcgacat cattcgcgct cttggcaagt acggtgccaa gcttctgacc atgcgcgtca
     3541 ccgacgtgat gtcgcgcaac gttccgacct gttctccgca ggacagcatc gcgcggttga
     3601 tgcagcagat gaccacttcc cgttaccggc acctgccggt tgtggatcgg ggcacgctga
     3661 ccggcctggt gagcatcggc gacgtggtga aggcccgcat cgcggacatg gaactggaga
     3721 ccgggctgct ccgcgacctg tacatcgccc gcggatgacg tcggcctgac ggcaccagac
     3781 atctccttat cggctgggac cggtgaatgt gaacgcgaga atggctcctg gatcggcgag
     3841 cttctcggtc gggggtccga acttcggtcc cgataggccc atgctgtcag tggcgatgta
     3901 gacagtccgg tagtcggggc tcagcgcgag atcccggtac cggttcgtgg tcttgaagaa
     3961 ctgggtgatg tcaccctgta ctgagccgcc gtcctgggtg agccgcaagc agtagagtgc
     4021 gccgttcttc aggctcgtca ccagcaacga gttgcgccag ccatcgaatc cacccttgtc
     4081 agctggcatg taatccatgc tggaaggcgc gatcgatggc caacagatgt atgcctggtc
     4141 accgcaggct ggatccttga aattgtaccc gttaggtacg gtatagaggg tcttcaaggg
     4201 ctcggtgtag tcggggctgt tccaggctgt ctcccgctgc tgggggatga acggaggaat
     4261 cgcaaagttg tcgtagtgca ggctggcaca gggtccggcg gtagacgcgg accagttccc
     4321 gtatacgtac gactggtcgt cgcggaaacc ggacacgtag ggccaaccgt agttctttcc
     4381 ggcttggatc agattgatct catcgtcggc tttcggaccg tgttccgctg agaacaggcg
     4441 acctcccggg ccgacgacca ggccctgcgg gttccggtgc ccgtaggagt agatatggct
     4501 ctgcactccc ctgatcgtcg ggttgtccgg tggaatgctg ccgtcaaaat tgagccgcag
     4561 agtcttgccg acgtaggtgg cccaattttt ggtccgaaca tcgtcggcgg tgggtaggtc
     4621 ctgcgcgcgt atcgggttac agaagcgctg gaactggttg ttcccctggt ctccgataga
     4681 atagtagagc ttctgatcgg cgccgaccag caggcgcccc gaattgtgat ccgtactcgc
     4741 cggcagaccg gtgatcagat ccatcggctg actcaatgta tgtgccgctg gatcgtaagt
     4801 gtaacgggct atcttggctc ttcgatcgac cgcggttccc gggtcggcgt cgtaggtgta
     4861 tgcgaggtag acgtcattac tgcccttgag aaagttgcct tgaaaagcca tgccgagcag
     4921 gccgtcttga ctctcggtgg agtacacgtc agcgatggtt gccaccgtgc tcttcgaccc
     4981 gtccgatggg ttcacccggg tcacccgctt gcctgtcttc tcggtgaccc agagaaagcc
     5041 atcggggccc attgtgatct cgtacggatc cgccaggcct gtggtcagga cgcgaaaggt
     5101 gaacggttca cctggaccca ccgcgcccgg gggctgctgc tgccgggcgc tcgcgcatcc
     5161 ggtgaccgtc aacgcgagca gggcggcaat ggccacgagc cgcttggcct gcaggaagtg
     5221 tcgagaacat gactggcgag gcatctcgtc atcgtgcccg catccgtact cgtccagcta
     5281 cgcggggtga ccgctagcct cacatgctca tcgctgggtc acgatctacc ggtacggatg
     5341 ggacgccagt gcatcccggc tgccttcgct gccgcgaacg accagggcga ccagggcgcc
     5401 aaccaggaag cccagtacat gagccaggta ggcgactgat cccccttgag aaattgcgta
     5461 tcccgcggtg taggcccatt gcagcaggaa ccacaggcca agcaccagcc aggcgggcag
     5521 tcgcagcggc aggaacaaca acaccggtac cagactccag acgcgcgccc gcgggtacag
     5581 gatgaggtac gcacccaaca ctcccgcgat agcgccggag gcaccgatga gcgcctcgga
     5641 ggattgcggg ttggccagcg cgaagccgta ggtggccacc atcccgcacg ccaggtagaa
     5701 cagcaggtac cggagccggc cgaaccggtc ctcgatgttg tttccaaaga tccacaggaa
     5761 cagcatgttg ccgagcaggt gcagccaact accgtgcagg aatagagatg tcagcgccga
     5821 tagcaccggg ttcttgtggt agctgggctc ggcgatgacg cagccgggac cttgctcgtc
     5881 cgccccgatc cgtccgtccg cgacgagctc cagcggccgg ttgctcgtca actcggcggg
     5941 gatcgcggcg taacggtcga agaacgcctg ctgctggcag ctctgcgcca ggctggaggc
     6001 acccgtcacc gtggttgccg cacccggcgt gagcaggaag acaaccacgt tcgccatgat
     6061 cagcgcgtag gtgacccacg gcgtgcgaag caccggattg acgtcgcgga cgggaatgac
     6121 catctcacta gcttgcccgc tcacctgccg caacggtgag ggtgggcgac ccctattgtt
     6181 ccccttgctg tgcccgtgca atggctcaca gttgtccgat tcgcgaactt cctcgtctca
     6241 tgtgccaccg atcagtctct agccctcatc caggggaggc gttgtgggct acagccttgg
     6301 agtggacctc ggcacgacat tcgtcgcggc cgcgattgcc accgccaccc gagtcacgat
     6361 ggtcaagctc ggcaatcagt cggtcgtgat accggcgacg gtgtacctcc gggaggacgg
     6421 cacactcgtg accggggagg ccgccagcct acaagcggtc agcaacccgg accggatcgg
     6481 catcgagatg aagcgccggt tgggcaaccc aacacccgtg gaactcggcg gtgagccata
     6541 caacgtcacc gctctgctcg gtgccctctt gcaggacgtc atccagaagg tgatcgacac
     6601 cgaaggtgcc cctcccgagc ggctcatgct gacccacccg gccaactggg gccccttccg
     6661 ccggacgctg ttcgaggagg tgccgcagtt cgcgggcctg gacaacccac ccgcggtgac
     6721 cgaacccgag gcggtcacgg cgcactacgc cacgtcgcgg acgctggccg atggcgcgac
     6781 aatggcggtg tacgacctgg gcggcggcac cttcgatgcc acgatcctgc ggactcaacc
     6841 cggcggtatc gagatcctcg gcattccgga cggcatcgac cggctaggcg gcgtcgattt
     6901 cgacgaggcg atcctgtcct acgtcgacta tgtcgccgac ggagcactca gcggactgga
     6961 tatgcgggat cctcaggccg gtaccgcgct gtcccggctg cggcaggagt gcatgctggc
     7021 gaaggaggct ctctcggcgc agagcgagac ggtcatcccc gtctcgctgc ccgatcggca
     7081 attcgacgtg cgcttcacca gatctacctt cgaggagatg gtgcggggtc cgatcgagtc
     7141 caccatcgca gcgctgaccc ggacccttga gtcagctcag gtgaaacccg ctgaactcag
     7201 cgctgtgcta ctggtaggcg gatccgcacg gattcccttg atcgcgcgga tgctgtcagc
     7261 cgagctggga cgacccaccg tggtggacaa agagcccaaa tgcgccgttg ccctcggcgc
     7321 cgcgacgttg gctgccaaag tccctgtgcc gacggtgggc accatcttca gtacccgcta
     7381 tcaacgcagc ggggccgtcc cacccgcacc cgaacccctc ccggccgacg tggtcaccga
     7441 gccgccggca actgccctcc gcccgctcgc cgaggagaca gatccatcac tcaccacacc
     7501 ggcccaccgc gcgcctacgc ccattggtcg tcaacgtcgg ccctggctac tcatcgtctt
     7561 caccgccgca ctggcgatca ctctaggtgg cctgggattc gtattgctga agcccgtgac
     7621 ggttggggcg agcatcaagg caccggggtt gatgctgtca acctgtcaag tcaagatcga
     7681 cgagacctac acggccattg cctcagggtt cgagcccggg gagaacgtcc ggttctcctg
     7741 gaccggtcca accatcggcg tgatgggtgc ctttcctgcc gactccggtg gcaacaggtc
     7801 acccgggggg atcgtggaaa aggatcctcc ggggacctac gccatcatcg ccaccgggct
     7861 gagatcggga cgcaccacct cggcaggact ggtcgtggcc gacgccgacg cggcacggct
     7921 gaagctgtca tcctgtcagg ccaagatcgg cgatcgctac accgccaccg cctcgggatt
     7981 cgagcccgga gagaacatcc ggttctcctg gaccggcccg accaacggcg tcatgggcat
     8041 cttcctcgcc gacgccgctg gggctggctc gcacggagaa accctgacca agaaccctac
     8101 ggggacctat acaatcaccg ccaccggact gagatcggga cgcatcgcct cggccgggct
     8161 acaggtcctc cccggcggtc gctgagcgtc gacggccgtg gcccagaccc ggcggccgcg
     8221 atcctgattc gccgatttct gcccgttgcc tttccggccc cagatccgcc agctgtgaat
     8281 gtctcggcga gtcggtgcgt ctccgcagtg gtttccgggc accatatgcg ccatgttcac
     8341 ctcccgacag cccttttacg cgcgattcgg ttacgcgcga tccggcagcg accggtccgg
     8401 cggtgtcgtc gacggacgca ggttgtggac gagtggcgca gtcacggcgg tgattgtatt
     8461 cggcctggcg atcgccgcgt ttctcctcgt ccacggcatg ctgaactacc cgcttcttgg
     8521 cgtcaggggc ggtggcgcgg tcgtctacgc gagcatgttc ggctacgcgg gtggtgcggc
     8581 gctggtggcg atgctggcca ctgccgcgat gcgcttcctg ctgttgagca ctccacggcc
     8641 aaggtggttc ttcggctggc tcggtggggt cggcacggcc atcgcggtac tgctccccct
     8701 ggcactgtcc caagacgcag cggcccggct ggccaccgcg atggtcaatc tggtcctagg
     8761 gctggtgatc atcggcctgg tccgcagcac tgccgccagc ctccgcctgg acggctcggc
     8821 ggagctgcca taaaccctcc gcgggccggc ggcggccagc cttcgcctat ggctggcctg
     8881 tggtgaactc ggcgcgcatc gtgggcagca gctggtcccg ggcatagtcg agaaatggtt
     8941 gctggtgctt cggagcaccg ccgatctgca ccagcgcgag atctgtgaac cccgcctcgg
     9001 cgaagggccg tgctgccgcg acatgcatgt cgacgtcggg tccgcaagag atgctctcgg
     9061 aaatatcgtc cggccggacg aactggttcg cggcggcgaa cccggcagtg gagggcagct
     9121 ccgcgttaac cttccagccc ccaccgaacc agcggaactg ctcatgtgcc cgggcgatcg
     9181 cggtctcccg atcagcgtcg aagcagaccg gcaactggcc gatccggcgg ctggtgccct
     9241 ttccgggccg cgcggcgtcc cacatcgtgg ccaactcggc gttcggctcg accgcgatca
     9301 tgtggtcggc gagcgggccg aacaactcgc acgattgggc gcccgacacc gccaccgcga
     9361 tcggcacccg ctgcgtcggc aggtcccaca gcttcgccga gtcgacttgg tagtagtggc
     9421 tgcgccgggt cacgtatccg ccatcgaaga gcgcatggat gatcctcaac gcctcgacga
     9481 gcatctcgtg gcgcaccgtg accgacggcc agccacgtcc caccacatgt tcattgaggt
     9541 tctccccaga ccccaggccc aggg
//
LOCUS       DASVXZ010000308         3316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1198429, whole genome shotgun sequence.
ACCESSION   DASVXZ010000308 DASVXZ010000000
VERSION     DASVXZ010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198429"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VF788_06395"
     CDS             <1..375
                     /locus_tag="VF788_06395"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEX8933811.1"
                     /translation="DDNSPPTFDVVIAGNACRNVGAQCLIATGDQHSNSAAPTGGPSI
                     TFVDNTCASNGAQAVNLRRWPNVEIRNNKLSGPNVTRGIIIIEGSTGCVVIGNTTDGG
                     RPTVDIDRSSQPGSQLEHNNPG"
     gene            526..717
                     /locus_tag="VF788_06400"
     CDS             526..717
                     /locus_tag="VF788_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933812.1"
                     /translation="MFTTVMIEAYCPECAEFGAFEQPPCVDGHGPDCPEWLCLTCGIA
                     LLIDVPVEQLPDTFHARAA"
     gene            951..1121
                     /locus_tag="VF788_06405"
     CDS             951..1121
                     /locus_tag="VF788_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933813.1"
                     /translation="MAEDRTNAPSADELKQRFEKIGTESNLGAGEEEPDPATSDSPPS
                     DIKAGDQKREQN"
     gene            complement(1385..1714)
                     /locus_tag="VF788_06410"
     CDS             complement(1385..1714)
                     /locus_tag="VF788_06410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933814.1"
                     /translation="MTAIHIIDQGGVSGLKEPEYIRVLYYVLEAAGVVAATLLLTRYG
                     KSGWFLALGVAAGPILGYVLSRGPGLPNYDDIGNWTEPLGVISLVVEGILLIIAAAVL
                     ATARRST"
     gene            1948..>3316
                     /gene="proS"
                     /locus_tag="VF788_06415"
     CDS             1948..>3316
                     /gene="proS"
                     /locus_tag="VF788_06415"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEX8933815.1"
                     /translation="MPKPALLTPRSTDFPRWYQDVIARAELADNGPVRGTMVIRPTGY
                     ALWERMQREVDNRIKAVGGQNAYFPLFIPESYLKREAEHVEGFSPELAVVTHAGGKQL
                     EEPVVVRPTSETIINSFFAKWVQSYRDLPMKLNNWSNVVRWEMRPRTFLRTTEFLWQE
                     GHTCHATEADARIHAREVLDDVYGTFMTDVLAIPVVKGRKTARERFAGATNTLTCEAM
                     MGDGKALQMGTSHELGQNFARAFDVQFLAASGQREYVWQTSWGVSTRMIGGLIMCHGD
                     DAGLRVPPRLAPVQAIVLVVRDDADVRARAHQVVRELHDAGARAVLDEQTDVSFGRRA
                     IDAELKGIPVRVELGPRELAEDKAILVRRIPGTKQPVAPAALVPEIKAALRTDQQMLY
                     DQALARREAASPLVESLDQAREAASRGWARIPWSVLGEHGEAALAEHAVTVRCLTSPD
                     GDVPDS"
BASE COUNT          629 a         1073 c         1058 g          556 t
ORIGIN      
        1 gacgacaaca gcccgcccac cttcgacgtc gtgatcgcgg gcaacgcctg tcgcaacgtc
       61 ggcgcgcaat gcctgatcgc caccggagac cagcactcga acagcgccgc cccgaccggg
      121 ggcccgtcga tcaccttcgt cgacaacacc tgtgcgtcta acggcgcgca agcggtgaac
      181 ctgcgccgct ggcccaacgt cgagatacgc aacaacaagc tctccgggcc caacgtgacc
      241 cgcgggatca tcattatcga gggctcgacc ggttgcgtgg tgatcggcaa caccaccgac
      301 ggcggccgcc caacggtgga tatcgacaga tcctcacagc ccggttccca gttggaacac
      361 aacaaccctg gctgagactt gttatccctt cgcaagccgg ctgcgtgatc gacgccgcct
      421 ggacgatccc ggaggccgaa cgccgcgcga gctgagacac gcccggctca cctccaccac
      481 tttcgctgct gcgggtggca ccgtcggtag ctggaggtga accgagtgtt tacaacagtg
      541 atgatcgagg cgtactgccc ggaatgcgcc gagttcgggg cgttcgaaca accgccgtgt
      601 gtcgacgggc acggcccgga ctgtcccgaa tggctctgcc tgacctgcgg catcgcgttg
      661 ctgattgacg tgccggtgga gcaactgccg gacacgtttc acgcacgcgc cgcgtaagcc
      721 ttacagatcc ggaatcttct gataatactc ggcgatcatg gttcacagtc ctggttcttc
      781 gtcgcgaccg agatgggcag tccccgcttc atccgatgcg gtcttggccg atgcagggcg
      841 tcacagcggt ggcgctcatg cgtcgctggg cccctggcgg ttttaagttt acgaccaagc
      901 ttgttgggca ctctgtgtgt agtggtttcc cccaacgtag aggagcgatc atggctgagg
      961 accggacgaa tgcgccgtcg gcagacgagt tgaagcagcg cttcgagaag atcgggacgg
     1021 agtcgaatct aggtgctggt gaggaggagc ccgaccccgc aaccagtgac agccctccca
     1081 gcgacatcaa ggccggagac cagaagaggg aacaaaactg agacgccaag cggaacatag
     1141 agttcgaccc ccgaccgtga agtcctggtc gggggtcgaa ctctatgttc acccgaacgg
     1201 ttaggtgaat tctttgatcc tcgccggtca gcgcaagatc ctcaaccagt tgatgagaac
     1261 cgatgtccaa tggcgcgagg ccgatgcccg ctttgggggc tagcgtttgg ctcactcgtt
     1321 gccgttggcc cgcagccacc gcgcaggagt aagaccctga ccgaggcaat cgtagagatc
     1381 agccttaggt acttcggcgc gctgtcgcca ggactgccgc ggcgatgatc aggaggatgc
     1441 cctcaacaac aaggctgatg acgcccagtg gctcggtcca gttgccgatg tcgtcgtagt
     1501 taggcaaccc gggcccccgg gagagcacgt agccgaggat gggaccagct gcgactccca
     1561 gtgcgagaaa ccaacctgac ttcccgtaac gggtcagcag cagtgttgct gccacgacac
     1621 ctgcggcttc gagaacgtaa tagagaaccc ggatgtattc cggctctttg agcccggaca
     1681 cgccaccttg gtcgatgatg tgaatagcag tcacggccaa acaccccacg acgccgagcg
     1741 cctgcggaat cacactccta cctgtggccg gaccgggggc ggtagtcgtc cgcaccatac
     1801 tgacactgat cctctctccg tggcgcacac caacggtgcc gagcgggacc gtcatctgtt
     1861 tgttctcacg cgatttccgc tgaacaccgc cacagcaccc cttggagcgc cagaaccccg
     1921 gattcggtag cgagctaggc tccggccatg cccaagccgg ccctgctcac cccgcggagc
     1981 accgacttcc cgcgctggta ccaggatgtc attgcccgtg ccgagcttgc cgataacggt
     2041 ccggtgcggg gcaccatggt gatcagaccg accgggtatg cgttgtggga gcggatgcag
     2101 cgcgaggtcg ataaccggat caaggctgtc ggtgggcaga atgcttactt cccactgttc
     2161 atcccggagt cctacctcaa gcgcgaggcc gagcacgtcg agggattcag ccccgagctc
     2221 gccgtggtga cccacgccgg aggcaagcag ctcgaagaac cggtagtggt ccggccgacc
     2281 agcgagacga tcatcaactc gttcttcgcc aaatgggtgc agtcctaccg agatctgccg
     2341 atgaagttga acaactggtc caacgtggtg cgctgggaaa tgcgtccccg aacctttctt
     2401 cgcaccacgg aattcttgtg gcaggagggg cacacctgcc atgcgaccga ggccgacgcg
     2461 cggatccacg cccgggaagt gctcgacgac gtctatggca cgttcatgac agatgtgctg
     2521 gcaatcccgg tcgtgaaggg ccgcaagacc gcgcgggaac gcttcgccgg tgccaccaac
     2581 accctgactt gcgaggcgat gatgggtgat ggcaaggcgc tgcaaatggg caccagccac
     2641 gagctcgggc agaacttcgc ccgcgccttc gacgtgcagt tcctcgctgc gtcggggcag
     2701 cgtgagtacg tctggcagac gtcctggggc gtgtccaccc ggatgatcgg cggcctgatc
     2761 atgtgccacg gtgacgacgc cgggctgcgg gtgccgcccc ggctcgcccc ggtgcaggcg
     2821 atcgtcctcg tggtgagaga cgacgcggac gtccgcgctc gggcgcatca ggtcgtgcgc
     2881 gaactgcacg acgctggtgc ccgggcggtg ctggatgagc agaccgacgt cagcttcggg
     2941 cggcgggcca tcgacgccga gctcaaaggg atcccggtgc gggtcgaact cggacctcgg
     3001 gaactcgccg aggacaaggc catcctggtc aggcgaattc cggggacgaa gcaaccggta
     3061 gcgccggccg ccttggtccc cgagatcaaa gctgctcttc gcaccgacca gcagatgctg
     3121 tacgaccagg cgctggcccg tcgcgaggct gcgtcgccgc tcgtcgagtc tctcgaccag
     3181 gcccgggaag cggcctcccg aggctgggcg cgtatcccct ggtcggtgct cggcgagcac
     3241 ggagaggccg cgctcgctga gcacgccgtc accgtgcgct gcctcaccag tcccgacggg
     3301 gacgtccccg acagcg
//
LOCUS       DASVXZ010000309         1875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1002264, whole genome shotgun sequence.
ACCESSION   DASVXZ010000309 DASVXZ010000000
VERSION     DASVXZ010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1002264"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..950)
                     /locus_tag="VF788_06420"
     CDS             complement(108..950)
                     /locus_tag="VF788_06420"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007025792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX8933816.1"
                     /translation="MSRENVLVTADWAEQNLNTDGIVFVEVDEDTTAYDAGHIPGAVK
                     INWKTELQDPVIRDFVDKGAFEKLLSDKGISNDDTVVLYGGNNNWFAAYAYWYFKLYG
                     HENVKLLDGGRKKWELDGRPLTTDEVSRPATSYTAKQDQDTTIRAFRQEVVDAIGNKN
                     LVDVRSPDEFAGKILAPAHLPQEVAQRPGHIPSALNVPWSKAANEDGTFKSDDELREL
                     YKAAGLEESKPTIAYCRIGERSSHTWFVLHELLGYSDVKNYDGSWTEYGSLVGAPIEL
                     GSKG"
     gene            complement(1233..>1875)
                     /locus_tag="VF788_06425"
     CDS             complement(1233..>1875)
                     /locus_tag="VF788_06425"
                     /inference="COORDINATES: protein motif:HMM:NF022655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2993 domain-containing protein"
                     /protein_id="HEX8933817.1"
                     /translation="HYTAIDVRATGATVDPLHDLDVEATLHDVDAPLAEVTSGDMHSV
                     RAARVDGRVRIKDTDLGRAIGIEDLRIQQPSDQEIKQLLPAGIPTGESPHGDRAPVRM
                     VATTDLLGHRTEIVGIGLIQLTGGVVRITVSGVRLARDGIGTASLPRPVRQTMLNTLS
                     TTVKPGELPFAVTPTRVWVETGSVVVEGTASNVSFAGVSRSSARCVTLLCPLT"
BASE COUNT          282 a          601 c          627 g          365 t
ORIGIN      
        1 gacgggttcc tcggctgtgc gcaccgtgcc ggccaccacg gtctgcttgg acagatccgt
       61 ccccggtggc aattccgggg tctgttccgg tgccccgcac acggcgatca gcccttgctg
      121 ccgagctcga tcggtgcgcc caccagggag ccgtactcgg tccaggaacc gtcgtagttc
      181 ttgacgtcgg agtatcccag cagctcgtgc agcacgaacc aggtgtggct ggagcgttca
      241 ccgatccggc agtaggcgat ggtcggtttg ctctcttcca gtccggccgc tttgtagagc
      301 tcgcgcagct cgtcgtcgga cttgaaggtg ccgtcctcgt tcgctgcctt ggaccagggc
      361 acgttcagcg ctgaggggat gtggccagga cgctgcgcca cctcttgcgg taggtgcgca
      421 ggcgccagga tcttgccggc gaactcatcc ggcgagcgaa cgtcgaccag gttcttgttc
      481 ccgatcgcgt cgaccacctc ctggcggaac gcccggatcg tggtgtcctg atcctgcttg
      541 gcggtgtagc tggtggccgg ccggctcacc tcgtcggtgg tcagggggcg accgtcgagc
      601 tcccacttct tgcgcccgcc gtcaagcagc ttgacgttct cgtgcccgta gagcttgaag
      661 taccagtagg cgtacgcagc gaaccagttg ttgttgccgc cgtagagcac caccgtgtcg
      721 tcgttgctga tgcccttgtc ggacagcagc ttctcgaagg cgcccttgtc cacgaagtcg
      781 cggatcaccg ggtcctgcag ctcggtcttc cagttgatct tcactgcgcc ggggatgtgc
      841 cccgcgtcgt aggcggtggt gtcctcgtcg acctcgacga aaacgatacc gtcggtgttc
      901 aggttctgtt ccgcccaatc ggccgtgacc aggacgtttt cgcggctcat gcgacagctc
      961 ctcgttttgt atttgatctt gttcacaact tcaggggaca tttcccgggt gccgctgctc
     1021 tgtgacatgc cgcaggggtg gcgaggggta tcgccggaac tcacccgcga tcaggtggga
     1081 gtcgccgccc ggtcagggca ggcaacacag gctgctgtgc aggcggcaga aatcaactgc
     1141 ccggcgcttg gtcagcagcg ggtgcacgcg atcgacacta cctgacagtt ccgctctacg
     1201 ggaccgtcat tccacgaagg tgcaagtcgc cgtcaggtga gcggacacag gagcgtgaca
     1261 caccgggcac tggagcgtga cacgccggca aacgagacgt tggaggcggt gccctccacg
     1321 accaccgagc cggtctccac ccagaccctg gtgggggtca cggcgaacgg cagctcgccg
     1381 ggtttgacgg tggtgctcag cgtgttgagc atggtctggc ggacgggtcg cggcaggctc
     1441 gccgtgccaa tcccgtcgcg tgccagccgg acgccgctga cggtgatccg caccacgcca
     1501 ccggtgagct ggatcaaccc gatcccgacg atctcggtgc gatggcccag caggtcagtg
     1561 gtggccacca tccgcaccgg cgcgcggtcg ccgtgcgggg attcgccggt cgggatcccg
     1621 gcgggaagga gttgcttgat ctcctggtca gagggctgct ggatgcgcag atcttcaatc
     1681 ccgatcgcgc ggccgaggtc agtgtctttg atccggaccc gaccatccac ccgagccgcc
     1741 cgtaccgagt gcatgtcgcc tgaggtcacc tcggccagcg gtgcgtcgac gtcgtgcagc
     1801 gtggcttcca cgtcgaggtc gtgcagcgga tccacggtgg ctccagtggc ccgtacatcg
     1861 atggcggtgt agtgg
//
LOCUS       DASVXZ010000310         3016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_660219, whole genome shotgun sequence.
ACCESSION   DASVXZ010000310 DASVXZ010000000
VERSION     DASVXZ010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3016
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660219"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /locus_tag="VF788_06430"
     CDS             <1..567
                     /locus_tag="VF788_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX8933818.1"
                     /translation="SATGRKFLRGPRGTGFLYVRRSILDRLEPPFLDLHAATWTEPDR
                     YEIRFDARRFESWETNVAGKIGLGVAADYALSWGLDAIAARVTALAEDLRERLRALGG
                     VQVHDQGLHRCGIVTFTVDGVPAGDVQGRLTESGVNTSVSHAGSARLDLPRRGLPELV
                     RASVHYYNTHDELDRLVTALPAGDNQIG"
     gene            complement(575..844)
                     /locus_tag="VF788_06435"
     CDS             complement(575..844)
                     /locus_tag="VF788_06435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933819.1"
                     /translation="MSTSLQLAHQWWAGLDHTDRQRVWNARHSYLAGDLVESMAKAGV
                     PVVSDGRWSCVSVGPTGFTVPVAVEQLLDGLSRASDGAHPLGSFP"
     gene            complement(1101..1469)
                     /locus_tag="VF788_06440"
     CDS             complement(1101..1469)
                     /locus_tag="VF788_06440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933820.1"
                     /translation="MSTQITGNRWGIDARDDIITGQTRIAADPTTQRAQDSMAQLVRQ
                     GQDTSLRSLQVWADLARRFGSTEASSSVGSTMFSLAHDPFEKLLEAQRQVVDELVATQ
                     RELARQIFDATAAFGVNPHR"
     gene            2082..2405
                     /gene="cutA"
                     /locus_tag="VF788_06445"
     CDS             2082..2405
                     /gene="cutA"
                     /locus_tag="VF788_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020638528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HEX8933821.1"
                     /translation="MSAEHVIVTSTTDSEQAARALAAGVIGAKLGACAQVLGPITSLF
                     RWEGEVQTEQEWRVEIKTAADRVATLTEHIKANHSYDVPEVIATPITGGSAEYLAWLV
                     DETRS"
     gene            complement(2412..2996)
                     /locus_tag="VF788_06450"
                     /pseudo
     CDS             complement(2412..2996)
                     /locus_tag="VF788_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020631956.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
BASE COUNT          557 a          971 c          977 g          511 t
ORIGIN      
        1 tccgccaccg ggcgtaaatt cctgcgcggc ccgcgaggca cgggtttcct ctacgtacgt
       61 cgctcgattc tcgaccgcct cgagccaccc tttctcgacc tgcacgctgc aacgtggacc
      121 gagccggatc gttatgagat ccggttcgat gcacgccggt tcgagagttg ggagaccaat
      181 gtcgccggca agatcggcct gggggtcgcc gccgattacg ctctgtcatg gggtctcgat
      241 gccatcgcgg cccgcgtcac cgctctcgcc gaggatctac gggaacggct gcgagccctt
      301 ggcggtgtgc aggtgcacga ccagggcctg caccgttgcg gcatcgtcac cttcaccgtc
      361 gacggggtac ccgccgggga cgtccagggc cgcctgaccg aatcgggcgt gaataccagc
      421 gtctctcacg ccggctccgc ccgcctggat ctgccccgcc gagggctgcc cgaactggtg
      481 cgagcctcgg tgcactacta caacacccac gacgagctgg accggctggt caccgccctc
      541 cccgccggcg acaaccagat cggttgaccg agcgctacgg gaaactaccc agtgggtggg
      601 caccgtcaga tgctcgggaa agcccgtcga ggagttgctc gacggcaacg ggcacggtga
      661 agccggtcgg cccgacgctg acgcaggacc agcggccatc gctgacaacg ggcactccgg
      721 ctttggccat gctctcgacg aggtcgccgg cgaggtagct atggcgggcg ttccagaccc
      781 gttgacggtc cgtgtgatca aggccggccc accattgatg ggcaagctgc aaggaggtac
      841 tcatcgcgta accaccttct gggtagtcgt cgttgcgatc ggtggacgga gctcgcaggg
      901 cgtggatttc cagctcacct gcgagtctcg ctcgctgtgc gcgggatcac accggcgcca
      961 tcgccgcctg aggacggctg tcttcggcgg aggggccggc tcgctccgca gcaagcacag
     1021 gcactggaca cggctagatc atgagcgcag ttacgcgcag tccgtatcct gcggtgtggg
     1081 agtgtcctcc gccggaggtg ttaccggtgg ggattgacgc cgaaggcggc agtggcatcg
     1141 aagatttgtc gtgcgagttc acgctgagtg gcaacgagct cgtcaaccac ctgacgctga
     1201 gcttcaagca acttctcaaa cgggtcgtgc gcgagggaga acatcgtaga gcctaccgat
     1261 gagctcgcct cggtggagcc gaacctgcgg gccaggtctg cccacacctg aagcgatctg
     1321 agcgaggtgt cctgtccctg gcgcacaagc tgagccatcg agtcctgcgc acgctgcgtg
     1381 gtcgggtccg cggcgatgcg ggtctgccca gtgatgatgt catcgcgggc gtcgatgccc
     1441 catcgattac ctgtgatctg agtggacatg ctagggctcc cgggtctcgg ggatgctgga
     1501 gatgccgtcc acctcccacc gtgcccaccg tcagctccgc gcgcaaccac ctgcacaata
     1561 aatcgaggta acgacctgat tggctcaagc tgcactgccg gtgcgctaca cagggaagcg
     1621 ggttgcttct ccccgggtac tactgtcgat catgactcgt gcacgctggc ggcgtgccat
     1681 gggggctgcc ctctagccac gatagctaga gaacatttta ctgattggta acgaaaatct
     1741 gcgctagacc acgtcgaccc gagggggtgc gatgatttga acgttagtct gattattcta
     1801 gtgataactt tcttggccgg tgtgctgatc gggtacacat ccactgaacg gctgctggaa
     1861 gtgcggacca agcgacaagc agcagcacag cgctccctca acagtcaaca gcacgcactt
     1921 gcgattgaat ggcaggaact tgaggccgct cggcgagaga ttgcggagcg gctagaggaa
     1981 gaactgcggc ggccgaccac atactgactt gcggcaaggt tcattgaagc cggtagctga
     2041 tcggcagcga cgttgtgcgg tccagcccta cgatcctcgg tatgtcggct gagcatgtga
     2101 tcgtcacctc gaccacggac agtgaacaag ccgctcgcgc cctcgcggcc ggagtgatcg
     2161 gcgccaaatt gggggcctgc gcccaggtcc tcggaccgat cacgagcctg tttcgctggg
     2221 aaggtgaggt gcaaaccgag caggaatggc gggtggagat caagacggct gccgatcgag
     2281 tggcgacgtt gaccgagcac atcaaggcca accacagcta cgacgtgccg gaggtcatcg
     2341 caacaccaat caccggcggc agtgccgagt acctcgcgtg gctggtcgac gagacgcgca
     2401 gctagtgcct tctatcgtga ccgcgtcgct tcgggtacac actcggcggc gcgcttcagg
     2461 agcagcgttc gttcccgggc attccgggtg agcgatgccg cgcgctcgaa ctccccacgt
     2521 gcttcctcgc gccgaccgag attggcgaga aaatcgccgc gcacgctcgg cagcaggtgg
     2581 tagccggcca gcgacggctc agaggtcagg gcatcaacca gccccagacc tgcggccggc
     2641 ccgaacgcca tcgccaccgc gaccgcacga ttcagctcca cgaccggcga gggcaccagc
     2701 tgggcaagag cctcgtaaag agccgcaatg cgtatccagt ccgtctgctc cgcggtagtg
     2761 gcgcgcgcgt gacaagccgc gatcatggcc tgcaccgcgt aaggaccagg ctggccgccg
     2821 agctcagcgg agcgttcaac cgccgcgaga ccacgatgga tgagcagctg atcccagcgc
     2881 gcccgatcct ggtcgagaag caggaccggc tctccaccag ggccagtccg gctcgccagt
     2941 cgcgaggcct gaatctccat gagcccaacc aggccgtgca cctccggctc acgcggccga
     3001 gctcagccag gatacg
//
LOCUS       DASVXZ010000311         3122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1198921, whole genome shotgun sequence.
ACCESSION   DASVXZ010000311 DASVXZ010000000
VERSION     DASVXZ010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198921"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VF788_06455"
     CDS             complement(<1..681)
                     /locus_tag="VF788_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8933822.1"
                     /translation="MRYRLLGNSGLRVAQLFLGAMTFGEQGGAGAPVKECARMLDAYA
                     DAGGNMIDTAVNYGSGASEEVLGELLIGRRDRFVLATKYTLTRDGTDPNAAGGHRKNL
                     RHSLETSLRRLRTDYIDLYWVHIWDRRTPLEETMRALDDQVRAGKILYVGISDAPAWV
                     VSRANTLAELRGWSPFVGLQVPYSLLHRDIERELLPMATGLGLSVAAWGPLAGGVLSG
                     KFTAGAQPS"
     gene            complement(727..1206)
                     /locus_tag="VF788_06460"
     CDS             complement(727..1206)
                     /locus_tag="VF788_06460"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase N-terminal
                     domain-containing protein"
                     /protein_id="HEX8933823.1"
                     /translation="MLLRHVGGGHRWAEEMVRTRATGFLADDQVRKLDGDDSADVPAT
                     WLMDGATRLAHTLRTAGPGTKVWTPLDLDGTASFWARRFAHETLIHRADATLAVDTEF
                     TVAEDVALDAIEWMELDSLPKHFEYKPQKRDLLGPGRTLGLAGFVAGPRRLRLISHG"
     gene            1698..1967
                     /locus_tag="VF788_06465"
     CDS             1698..1967
                     /locus_tag="VF788_06465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933824.1"
                     /translation="MNGSHQPINEVIIKEWLDRTIAGPFDGDLAAFLRRISHLPGREV
                     TFPGVQVALSPQLTLALTAWVQGQILTALGETSTWPPPRPPGQPG"
     gene            1964..2413
                     /locus_tag="VF788_06470"
     CDS             1964..2413
                     /locus_tag="VF788_06470"
                     /inference="COORDINATES: protein motif:HMM:NF022995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoglobin domain-containing protein"
                     /protein_id="HEX8933825.1"
                     /translation="MNQFMLQLGIILEPCLTNPDGPLGRHDVAAFHPYAEFADFGGEE
                     ASILSKTGPLLEPAAGGVITLPYGYLLSRPESAGYFQDTSHLAQRKMTLKGRWAKTTT
                     SPKDGDLHSYMSRVADAHVKGGGMYPIWSSRLRCVTNIPNSSDVTGV"
     gene            2816..>3122
                     /locus_tag="VF788_06475"
     CDS             2816..>3122
                     /locus_tag="VF788_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002545919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8933826.1"
                     /translation="MTVGVLAVLGALLDRPDTELYGLEIVRASGLEPGTIYPILQRLR
                     GAGWVRDRWEDPEAGRTESRPPRRYYRLTMEGRARAVHTLQHGRDRSGLSRLLARPHF
                     "
BASE COUNT          530 a         1009 c         1020 g          563 t
ORIGIN      
        1 actgggctgg gcgccggccg tgaacttgcc ggagagcaca ccgccagcca gcggtcccca
       61 ggcggcaacg ctcaggccga gcccggtcgc catcggcagc agctcgcgtt cgatatctcg
      121 gtggagcagg ctgtagggca cttgtaatcc gacaaacggg ctccacccgc gaagctcggc
      181 gagggtgttc gcgcgggaaa ccacccaggc cggggcgtcg gagatcccga cgtagaggat
      241 cttgcccgcg cggacctggt catcgagggc ccgcatggtc tcctcaagcg gggtgcggcg
      301 gtcccagatg tgcacccagt agaggtcgat gtaatcggtg cgcaaccggc gcaggctggt
      361 ctcgagcgag tggcgcaggt tcttgcggtg accgccagcc gcgttgggat cggtgccatc
      421 gcgggtcagt gtgtacttgg tggccagcac gaaccgatcc cgccgaccga tcaggagctc
      481 gccgaggacc tcctcgctcg ccccgctccc gtagttcacc gccgtgtcga tcatgttgcc
      541 gccggcgtcg gcgtaggcat caagcatgcg tgcgcattcc ttcaccggcg cgccggcgcc
      601 gccctgctca ccgaaggtca tcgcacccag aaacagctgc gcaacccgta acccgctgtt
      661 acccagcagc cggtaccgca tccaccgcct ccataccatc cacggtgtcg gcctgcccct
      721 cgactgtcaa ccgtggctga tcaggcgaag ccgacgtggc ccagccacaa atccagcaag
      781 cccgagggtt cggccagggc cgaggaggtc ccgcttctgc ggcttgtact cgaagtgctt
      841 cggtagcgag tcgagctcca tccactcgat ggcatcgagt gcgacatcct ctgcgacggt
      901 gaactccgta tccactgcca gggtggcatc ggcgcggtgg atgagggtct cgtgagcgaa
      961 gcgtcgggcc cagaacgacg ccgtgccgtc gagatcaaga ggggtccaga ccttcgtgcc
     1021 ggggcctgcc gtgcgcaggg tgtgcgccag gcgggtggcg ccgtccatga gccaggtggc
     1081 ggggacgtcg gccgagtcgt caccgtcgag cttgcggacc tggtcgtccg ccaggaaccc
     1141 cgtcgcgcgg gtccggacca tctcctcggc ccagcggtgc cccccgccga cgtgtcgcaa
     1201 caacatcccg agggtccagt ccgggcagga cggcacgggt gcgcgcagat ccgcccctcg
     1261 atgccggtgc tcagcagctc ggcctgggtg acgatctcgg tgcagcggcg gtcgtagtcc
     1321 aagaggtcta acttcaagac gttgagccta ccggccgccg cgcacgttca ccggcgccga
     1381 tggcatctcg tcacgctgtc cacccgccgc ggcggtgtac gtgccgatcc agcgcaccgg
     1441 ctcccggtgg ccttcggcga actcgccttc gctatcgggg gatgttaccg agcgtcacga
     1501 gctggtaacg ggagttaact ccccttttgt ggttagtcac gtaacccgaa ttttctccac
     1561 tccccgaatt cgccgggttc aggaggtacg aggctgccgc tgttcaagac accggcaaga
     1621 acatcccggc actttccgag tggatcacac aggaaatatc cgggtactta atgacgcgcc
     1681 cggaatccaa gcctctgatg aatggatcgc accagccgat caacgaggtg atcatcaagg
     1741 agtggttgga ccgaacgatc gccgggccct tcgatggtga cctggccgcg ttcctgcgaa
     1801 ggatcagtca tctccccgga cgagaggtga ccttcccggg tgtgcaggta gcgctctccc
     1861 cgcagctgac tctcgctctc accgcgtggg tgcagggaca gatcctcacg gcactgggtg
     1921 agacttcgac gtggccaccg cctcggccgc cggggcagcc tggatgaacc agttcatgct
     1981 gcagctgggc atcatccttg agccctgcct gaccaacccc gatggtcccc tcggccggca
     2041 cgacgtcgcc gcattccatc cctacgcaga gttcgcggat tttggcggcg aggaggcatc
     2101 aatcctgagc aagaccggac cgctgctgga accagccgcc ggtggtgtga tcaccctccc
     2161 ctacggttac ctgctttccc ggccggaatc tgccggatac ttccaggaca cctcacacct
     2221 agcgcaacgc aagatgacgc tcaagggacg gtgggcaaag acaaccacgt caccgaagga
     2281 cggtgacctc cactcttaca tgtcccgagt cgccgatgcc cacgtcaagg gcggcggaat
     2341 gtatcccatc tggtcatccc ggctgagatg cgtgacgaat ataccgaact ctagcgatgt
     2401 gaccggcgtg tgaatcggga aagtgccttc gacttgggat gctcgggttt gtctaggact
     2461 cgatgatccg cattacaggg gcactttcgg tgagatcttc gcatggatgg tcggtgtcgt
     2521 gcgttgtgcc ggtgccggtg ctgtcgctgg ccgaccagac cggactgggg gcgctgctgg
     2581 gcgcgtccgg ttcagggcgt cgaaggttcg atcaggagcg gtgatccgat cttgctgcgt
     2641 gagctcacct tcggtcgagc gtcggggtgg tgtgggttgg ggggcgccga gggtgagacg
     2701 cgctacccct ccctccattc gtaccctgct gaatatgagc ccgacgggat gaacactcgc
     2761 tatcgacaag ataaacgcta gctatgtaga gtaagtatct atggcgggtt tgcggatgac
     2821 ggtgggtgtc ttggcggtat tgggggcact tctcgatcgt cccgacaccg agctatatgg
     2881 gttggagatc gtgcgcgcca gcggattgga gccgggcacg atctacccga tcctgcaacg
     2941 gctgcggggc gccgggtggg tccgtgaccg atgggaggac cctgaggctg gtcgtaccga
     3001 gagtcggccc ccgcggcgct actaccggct gaccatggag ggccgagccc gcgctgtcca
     3061 cactctccag cacggtcgtg accgcagtgg tctgagccgc ctgctcgcgc gccctcactt
     3121 tc
//
LOCUS       DASVXZ010000312         3743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_392144, whole genome shotgun sequence.
ACCESSION   DASVXZ010000312 DASVXZ010000000
VERSION     DASVXZ010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3743
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392144"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VF788_06480"
     CDS             <1..311
                     /locus_tag="VF788_06480"
                     /inference="COORDINATES: protein motif:HMM:NF014310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEX8933827.1"
                     /translation="LAIERAACTDRDPLLRALLRTLDTELRQWCEHDGDPVASGVREV
                     YQQHCATLGEQVRVELPSELTLAGTAEQIDAEGRLVVLSDGHRRPLSVGDVTHVHADR
                     "
     gene            395..628
                     /locus_tag="VF788_06485"
     CDS             395..628
                     /locus_tag="VF788_06485"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX8933828.1"
                     /translation="MVDPALAVAAWDGADPMTDRERDVLRLAADGLPNTDIAARLHLA
                     EVTVRNYLSTAISKLGTRNRIEAARVARDRGWL"
     gene            complement(633..1184)
                     /locus_tag="VF788_06490"
     CDS             complement(633..1184)
                     /locus_tag="VF788_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005458873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HEX8933829.1"
                     /translation="MPLFTFGHGTADRGRLMELLDAAGIAELVDVRTAPGSRRNPDVA
                     REEMARWLPEHGIEYRWERRLGGWRKPPPDSPDIGLHNRAFTGYAAHMRTPEFLDAVR
                     DLLVTVGNRPTTVLCSESLWWRCHRRMVADFVVLSAGIPVLHLMHDGQVYEHRPTDVA
                     RIRDDGLLVYDGDQRPRSAVPLF"
     gene            1265..2368
                     /locus_tag="VF788_06495"
     CDS             1265..2368
                     /locus_tag="VF788_06495"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8933830.1"
                     /translation="MHARVSVTGTFLLHGAVFSSWYARLPAIQQRLELSPAELGFALF
                     GAPAGLLVAMPVIAALVARKGSRFVVAAAPLYLGTVVLPALAIDMVTLLVALVLVGAA
                     SGVLDVAMNAQGIAVERASGGALFSSLHAAFSFGALAGAAVAVAAGAVAALPYLAMNA
                     VVGAVLAAVLAPGLLDDRGNPDAPLFARPDRRLAALGMIAFCAVLAEGAVFDWSGVYL
                     TTQTGTTTRLAPLGLAAFSLFMGVGRLGGDRAATSAGSSRTACGGALLAALGLGVTLV
                     LATPAAAVTGFALMGLGLSVVFPLTLRAAALGSPGPAAPSLAAVSTVGYGGLLLGPPV
                     IGVLADAAGLRAALGLACLLCAGAAALASRCLR"
     gene            complement(2378..2830)
                     /locus_tag="VF788_06500"
     CDS             complement(2378..2830)
                     /locus_tag="VF788_06500"
                     /inference="COORDINATES: protein motif:HMM:NF014616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEX8933831.1"
                     /translation="MRNPSPEGAGMDPGQASQALIGWAEQLQRKADAYRGLHHQMSQL
                     TVTEMSADGMVRVSVDAQGVPTELTLTDRARGTDPARLSAELMTCLRRAHSTLATQVQ
                     DLVTASVPDSEEDAAAQIVASYLNRFGHPTGDPGTRHRRQTRPPGDGR"
     gene            2944..3465
                     /locus_tag="VF788_06505"
     CDS             2944..3465
                     /locus_tag="VF788_06505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX8933832.1"
                     /translation="MISGDEEESLPYPEDLLRDDERVVLHKHPHWKMLFVPVVTLLLI
                     VGLGSYAAALINGTSWQLYGWIGLAVLGGLGVVWLTVTPVLRWRTTHFVLTTRRVLVR
                     EGILSRSGIDIPINRINTVQFRRSLIDRLLGCGTLIIESASDEPLEFDDIPQVERVHS
                     LLYYEVNPAPEPG"
     gene            3462..>3743
                     /locus_tag="VF788_06510"
     CDS             3462..>3743
                     /locus_tag="VF788_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HEX8933833.1"
                     /translation="MTARAVGLPDRHPVSGLPARVTIWEVGARDGLQNEPVVLPVEAK
                     VEFLDRLATAGLQVLEATSFAHPRWVPQLADATELFGRLARRAGVRYPVL"
BASE COUNT          502 a         1222 c         1332 g          687 t
ORIGIN      
        1 cattggccat cgagcgggcg gcgtgcactg accgcgaccc gctgctgcga gcgctgctgc
       61 gcaccctgga caccgagctc cggcagtggt gcgaacacga tggtgatccg gttgcctccg
      121 gtgtgcgcga ggtttaccag caacattgcg cgaccctggg tgagcaggtc cgggttgagc
      181 taccgagcga gctcacgttg gccggcaccg cggagcagat cgacgccgag ggccgtctgg
      241 tggtgctctc cgatggccac cggcgcccgc tgtcggtcgg tgacgtgaca cacgtgcacg
      301 ctgaccgcta gccgagcctg ctccggccgc gacacggatg cttgtcgcag tcgtggggcc
      361 tgggttgaca tctgtcaccg gagggtggga gcgggtggtc gacccggcgc tggccgtcgc
      421 ggcctgggac ggtgccgacc cgatgaccga ccgggagcgt gatgtgctgc ggctggcggc
      481 cgatgggctg cccaacaccg acatcgctgc ccggctgcac ctcgccgaag tcaccgtacg
      541 caactacctc tcgaccgcga tcagcaagct cggcacccgc aaccgcatcg aggccgcccg
      601 ggtggctcgg gatcgcggct ggctctgaac ggtcagaaca gcggtaccgc agaccgtggc
      661 cgctggtccc cgtcgtagac gagaaggccg tcgtcgcgga tgcgtgccac atccgtggga
      721 cggtgttcat acacctgccc atcgtgcatg aggtggagca ccggtatccc ggcgctcagc
      781 accacgaaat cggcgaccat acggcggtgg cagcgccacc acagcgactc tgagcacagg
      841 accgtcgtag gacgatttcc taccgtgaca aggaggtcgc ggaccgcgtc gaggaactcc
      901 ggagtccgca tgtgggccgc gtatccggta aaggcgcggt tgtgcagccc gatgtccggt
      961 gagtcgggcg gcggcttgcg ccaaccacct aaccgccgct cccagcggta ctcgatgccg
     1021 tgttcgggta gccagcgcgc catttcctcg cgcgccacat cgggattgcg ccggctgccc
     1081 ggagcggtcc gtacatccac cagctcggcg atccccgctg cgtccagcaa ctccatcagc
     1141 cggccgcggt ccgccgtgcc gtggccgaag gtgaacaacg gcatctgcac agcatgggcg
     1201 agattgtctt caggcgcagt ggcggcagga ggatagaggg tcacgtgttg agttcggggt
     1261 gggagtgcac gctcgggtct cagttacggg aacatttctt ctccacggtg cggtgttcag
     1321 ctcctggtac gcgcgcctgc ccgcaattca gcagcggttg gagctctcgc ccgcagagct
     1381 gggatttgct ctgttcggtg ctccggccgg tctgctcgtg gccatgccgg tgatcgccgc
     1441 gctggtggcc cgtaaggggt cacgctttgt cgtggccgcg gccccgctct atctcgggac
     1501 ggtggtatta cccgcgctcg cgatcgacat ggtgacgctg ctggtggctc tcgtactggt
     1561 aggtgcggcg agcggagtgc tggacgttgc gatgaacgcc cagggcatcg cggtggagcg
     1621 ggcgtctggc ggtgcgttgt tcagctcgct tcatgccgcg ttctccttcg gcgcgctggc
     1681 cggcgccgca gtcgcggtgg ccgcgggtgc cgtggctgcg ctgccgtatc tggcgatgaa
     1741 tgccgtcgta ggtgcggtac tcgccgcggt gttggcaccg ggactgctcg acgaccgggg
     1801 gaatcccgat gcgccgctgt tcgcccggcc ggaccgccgc ctcgctgcgt tggggatgat
     1861 cgcgttctgc gcggtgctgg ccgagggggc ggtcttcgac tggagcggtg tctacctcac
     1921 cacgcagaca ggtaccacca ctcggcttgc gccgcttggg ctggccgcat tctcactgtt
     1981 catgggagtg ggccgactcg gcggtgacag agcggccacc agcgcgggct cgtctcgtac
     2041 ggcgtgcggc ggcgcgctgc ttgccgcgct tggcctcggc gtcacgctcg tactggcgac
     2101 acccgccgcg gccgtcaccg ggttcgcgct catgggcctg ggtctgtccg tcgtcttccc
     2161 gctcaccctg cgtgctgccg cgttggggag cccaggccca gcagctccga gcctggctgc
     2221 tgtctccacg gtcggctacg gcggtctgct cctcgggccg ccagtgatcg gggtgctggc
     2281 cgatgccgcc ggtctgcgag cggccctcgg gctggcttgc ctgctgtgcg cgggagctgc
     2341 ggcactcgcc agtcgatgcc tgcgctgaat cgcgggttta gcgaccgtcg ccgggtggtc
     2401 gggtctggcg acggtgcctt gtgccagggt ccccggtggg gtggccgaag cggttgaggt
     2461 agctggccac gatctgcgcg gcggcatctt cctcgctgtc cggaaccgat gcagtgacga
     2521 ggtcctgtac ctgcgtggcc agggtactgt gggctcgccg gaggcaggtc atcaactcgg
     2581 cggatagccg ggccgggtcc gttccccggg cccggtcggt cagagtcagc tcggtgggca
     2641 cgccctgggc gtccacactg acccgtacca tgccgtctgc tgacatctcg gtcaccgtga
     2701 gttgggacat ctggtgatgc aggccgcggt aggcgtcagc cttgcgctgc agctgctcgg
     2761 cccacccgat cagagcttgg cttgcctgcc cggggtccat gccagcgccc tccgggctcg
     2821 ggttgcgcat gattgatctc aactttctgc gacgccgatc cgcggcccgc gtgaacatgt
     2881 ccggcgtaac cacgcgcgcc gccggactgt accttcccgt cgcgtcgccc acgcaacggt
     2941 accgtgatca gtggcgatga ggaggagtct ttgccctatc cagaggacct gctgagggac
     3001 gacgagcggg tggtgctgca caagcatccg cactggaaga tgctgtttgt gccggtggtg
     3061 acgttactgc tcatcgtggg gctcggctcc tacgcggccg cattgatcaa tggaacatcg
     3121 tggcagctgt acgggtggat cggattggcc gtgctcggcg gccttggcgt ggtctggctc
     3181 accgtgacgc cagtgctgcg ctggcgcacc acgcatttcg tgctcaccac caggcgggtg
     3241 ctggtccgcg aaggcatcct gtcccgcagc gggatcgaca tccccatcaa ccggatcaac
     3301 actgtgcaat tccggcgttc cctcatcgac cggctcctgg gctgtggcac gctgatcatc
     3361 gagtcggcct ccgatgagcc gctggagttc gacgacattc cccaggtaga gagggtgcac
     3421 tcgctgctgt actacgaggt aaacccggca ccggagcccg gatgaccgca agggccgtcg
     3481 ggctgcctga ccggcatccg gtgtccgggc tgcctgcacg ggtgacgatc tgggaggtcg
     3541 gggcccgtga cggcctgcag aacgagccgg tggtccttcc ggtcgaggcc aaggtcgagt
     3601 tccttgatcg gctcgccacg gcgggattgc aggtgcttga ggcgaccagc ttcgcgcacc
     3661 cgcgctgggt accgcagcta gctgatgcca cggagttgtt cgggcggctc gcccggcgcg
     3721 ccggggtgcg gtatcccgtg ctg
//
LOCUS       DASVXZ010000313         2679 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1092373, whole genome shotgun sequence.
ACCESSION   DASVXZ010000313 DASVXZ010000000
VERSION     DASVXZ010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1092373"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VF788_06515"
     CDS             complement(<1..248)
                     /locus_tag="VF788_06515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEX8933834.1"
                     /translation="MTAPPGQVVSVNVGAPRIVRWRDRDVWTSFFKDPVAGRVAVQGI
                     NVAGDEQSDRSVHGGPDKAVYAYAQEDLGWWSDRLGVP"
     gene            complement(245..910)
                     /locus_tag="VF788_06520"
     CDS             complement(245..910)
                     /locus_tag="VF788_06520"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEX8933835.1"
                     /translation="MTSGFRLGIYVCKDAEIVDFAAPHGVFAVARRFDPELEAFLVAD
                     ALRPVQTQAGFTMLPNYSFTDRPAMDAFLIPGGFGLRQEVRNARLHEFIRSLPGETLL
                     TSVCTGSWVYGQMGLLDGLPATSRKEPDRVESKAPGKVPIDRLADIAPACRISRARIV
                     DAGRMVTAGGITSGMEMGFHLLRRAGYTEEFIEEVARVMEYSQAYQLYRDDVEVLQPA
                     VAG"
     gene            1011..1631
                     /locus_tag="VF788_06525"
     CDS             1011..1631
                     /locus_tag="VF788_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933836.1"
                     /translation="MPMSPETPDSSVAVRVLDAAERLFYARGVQAVGVDMVVAEAGVG
                     VKTLYAHFGSKDRLVEAYLRRRDRRWLDRLQARMAQSQGRDRVLAVFDALNDWFAEPG
                     FSGCAFINVAGELHTNPALRAIARKHKVALRTLLHVATREAEVADPETLADWLMLLVE
                     GAIVTAHVEGDQLAATRARSAAAALLNCSDHPADRNEANRLADRFQ"
     gene            complement(1580..2197)
                     /locus_tag="VF788_06530"
     CDS             complement(1580..2197)
                     /locus_tag="VF788_06530"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011211110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX8933837.1"
                     /translation="MSELVLVRHGETEWSASGHHTGVTDIPLTRAGELQVSQLRPLLD
                     GRRLGLVLTSPNLRARRTAELLGWANHEVDPDLAEWDYGGYEGRTTAEISVELGRPWW
                     IWTDPVPPGATPGETIDQIAQRADRVLARVAPLLSAGQDVALVGHGHHLRVLAARWLG
                     LDPQAGALLALSAGSMSGLGYEHDRPVILYWNLSANRLASFRSAG"
     gene            2337..>2679
                     /locus_tag="VF788_06535"
     CDS             2337..>2679
                     /locus_tag="VF788_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010306605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit alpha"
                     /protein_id="HEX8933838.1"
                     /translation="MFDALRVTSSQDQTGTRVGVPRESKDGERRVALVPKTVERLAGR
                     GLEVVVESGAGVGALMPDELFIEAGATIDDPWKADVVVKVAPPTDEEIARLRRGSVLI
                     GFLAPRSDPEIA"
BASE COUNT          440 a          936 c          873 g          430 t
ORIGIN      
        1 tgcggcacac cgagccgatc ggaccaccag ccaagatcct cctgagcgta ggcgtacacg
       61 gctttgtccg gcccgccgtg cacgctgcga tcggactgct cgtcgccggc gacgttgatt
      121 ccctgcaccg caacgcgtcc cgccacggga tccttgaaga acgatgtcca cacgtcccga
      181 tcacgccagc gcactatccg gggcgcgccc acgttgactg acacgacctg gcctggcggc
      241 gcggtcaccc ggccaccgcc ggttgcagca cctcgacgtc gtcgcggtag agctggtagg
      301 cctgcgagta ctccatcacc cgggccacct cctcgatgaa ctcctcggtg tagccggcac
      361 ggcgcagcag gtggaatccc atctccatgc cggaggtgat cccaccggcg gtaaccatgc
      421 ggccggcatc gacgatccgg gcgcggctga tccggcaggc cggggcgata tcggccagcc
      481 ggtcgatcgg caccttgccc ggcgccttcg actcgacccg gtccggttcc ttgcggctgg
      541 tggccggcag cccgtcgagc agtcccatct gcccgtagac ccacgagccg gtgcagacgc
      601 tggtgagcag agtctccccg ggcagggagc ggatgaattc atgcaatcgg gcgttacgga
      661 cctcttggcg cagcccgaag ccaccgggga tgaggaaggc atccatcgcg ggtcgatcgg
      721 tgaagctgta attggggagc atcgtgaacc cggcctgtgt ctgcaccggg cgaagcgcgt
      781 cggcgacgag gaacgcttcc agctcggggt cgaagcggcg agcgaccgcg aatacaccgt
      841 gcggtgccgc gaagtcgacg atctcggcgt ccttgcacac atagatcccg agccggaagc
      901 cactggtcat cgcacactcc tcagcctgaa ggaaaacgat cgttctccca ctggagtcta
      961 gagaacgatc gtttcccgtc aagccctccg ggcatctatg ctcgtcaccg atgccgatgt
     1021 caccggagac acccgactcg agcgtggcgg tgcgtgtgct ggacgccgct gagcggttgt
     1081 tctacgcccg cggcgtccaa gctgtgggag tcgacatggt cgtcgccgag gccggagtcg
     1141 gggtcaagac gctctacgcc cacttcgggt ccaaggaccg cctcgtcgag gcctacctcc
     1201 ggcggcgcga ccggcgctgg ctggaccggc tgcaggcccg gatggcgcag agccagggcc
     1261 gcgaccgggt gcttgccgtg ttcgacgctc tcaatgactg gttcgccgag ccgggtttca
     1321 gcgggtgcgc attcatcaac gtggccgggg agctgcacac gaacccggcc ttgcgggcga
     1381 tcgcccgcaa gcacaaggtc gcactgcgca ccctgctgca tgtagcaacc cgcgaggctg
     1441 aggtggccga ccccgaaacg ctggccgact ggctgatgtt gctggtggag ggggcgatcg
     1501 tcaccgccca cgtcgagggc gatcagctcg ccgcgactcg ggcccgatct gcggccgcgg
     1561 ccctgttgaa ctgttccgat caccctgctg atcggaatga ggccaaccgg ttggcggaca
     1621 ggttccagta gaggatcacc ggccggtcgt gctcgtagcc cagccccgac atcgaacccg
     1681 ctgagagcgc caggagcgct cctgcttgcg gatccagccc gagccaccgg gcagccagca
     1741 cccgtagatg atgcccgtgt ccgacgagcg ccacgtcctg tcccgccgat agcagggggg
     1801 caacccgagc cagcacccgg tccgcccgct gcgcgatctg gtcgatcgtc tcgcccgggg
     1861 ttgccccggg cggcaccgga tccgtccaga tccaccaggg ccggcccaat tcgacactga
     1921 tttcggccgt agtccgcccc tcgtaaccgc cgtagtccca ttcggcgaga tccggatcca
     1981 cctcatggtt ggcccaaccc agcagctcag cagtgcgcct ggcgcgcagg ttcggactgg
     2041 tcaacaccag tccgagcctg cgcccatcga gcagcggccg gagctggctg acctgtagtt
     2101 cacccgcgcg tgtcagcggg atgtcggtca ccccagtgtg gtggccgctc gcactccact
     2161 ctgtctcgcc gtgccgaacc agcaccaact cgctcatccc gccccctcgc gatccgacac
     2221 gctggatgca tcagctcacc acgcagacgt gggctgcttc gacagcacca ccgagtgagc
     2281 agtctcgcag tgtgttgcgc actgtttgca tcgctgcact ggacgtcgcc cggatcatgt
     2341 tcgatgctct gcgagtgacc tcatcgcagg accaaacggg tacccgagtc ggggtacccc
     2401 gtgaatccaa ggacggcgag cgccgggttg ccctggtgcc caagacggtc gagaggctgg
     2461 ccggccgtgg attggaggtc gtcgtcgagt ccggcgccgg cgtgggcgcc ctcatgcccg
     2521 atgagctgtt catcgaagcc ggtgcaacca tcgacgaccc ctggaaggcc gacgtcgtgg
     2581 tcaaagtggc cccaccgacc gacgaggaga tcgcccgcct gcgacggggc tcggtcctga
     2641 tcggattcct ggccccgcgg tccgacccgg agatcgccg
//
LOCUS       DASVXZ010000314         3018 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1557766, whole genome shotgun sequence.
ACCESSION   DASVXZ010000314 DASVXZ010000000
VERSION     DASVXZ010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1557766"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VF788_06540"
     CDS             complement(<1..186)
                     /locus_tag="VF788_06540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933839.1"
                     /translation="MKLEVHDIVLSSSLWSRLRDHLLPAQDDPVKWASNEQLAFILAA
                     PNVSASRIRLVGHELLLA"
     gene            complement(189..647)
                     /locus_tag="VF788_06545"
     CDS             complement(189..647)
                     /locus_tag="VF788_06545"
                     /inference="COORDINATES: protein motif:HMM:NF025817.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E2/UBC family protein"
                     /protein_id="HEX8933840.1"
                     /translation="MANDLETRRRLSRLKTEALMLSQQVGDVRFDTQSGTWFYVERFA
                     ISPGWNKAHIELLIDIPHGTPGYPSVPPEWFWTDHDLRTSEGQPINHFFTRGPGSDRE
                     HHDHGWGHFCVHLIGWRPAGGADLMRGHSLATYLNLIAAIFRDQRTLSGA"
     gene            complement(656..883)
                     /locus_tag="VF788_06550"
     CDS             complement(656..883)
                     /locus_tag="VF788_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933841.1"
                     /translation="MGNYIVNGEVVDVREDRPTAADLKRHSKSVLSDWVMASMPDGQI
                     VKLEDHKPLPAHAVDYSVVTPFTYGCADRSG"
     gene            complement(1398..2555)
                     /locus_tag="VF788_06555"
     CDS             complement(1398..2555)
                     /locus_tag="VF788_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEX8933842.1"
                     /translation="MRRVLMLLGLAILLTACSGGPTEPFGRSAPPRPQAQVSVLPGDK
                     ATNISPTLPVSVRVTGGVLQQVTLANPDGRPVAGALSSDRSSWTSTEPLGYGRTYTWS
                     GTAAGPDRLSVPVTGSFTTVKPKQQLHATLNIGDGDTVGIAAPIILQFDDHVSDKAAV
                     ERALQVQASVPTEGSWAWLPDDNGGSRAHYRPKDYWQTGTKVGVTAKLYGVALGGGSY
                     GRADISTQFTIGRAQIVKADVNSHRMIVIRDGQEAMNFPASYGLSSDPNRNTTSGIHV
                     VMNKAQTVLMSNRAYGYVNIPEHWAVRISNNGEFIHANPETTGVQGASNVTHGCVNLS
                     TGNAQAYYETAIFGDPVEVTNSPTPLTGADGDIYDWTVPWDSWLAMSALHS"
     gene            complement(2678..>3018)
                     /locus_tag="VF788_06560"
     CDS             complement(2678..>3018)
                     /locus_tag="VF788_06560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933843.1"
                     /translation="AVLPSGVRDFATEIRVHGDTFQSGGAGPDTETVLSAGRARAKAL
                     GLATGDRLLCTANWDSTVPGELLIAVLAADASLVQCTGVDLAALPHRCATERVTVTFG
                     VEVPSMRRAG"
BASE COUNT          535 a          918 c          940 g          625 t
ORIGIN      
        1 tgcgagaagg agctcgtgac ctaccaaacg tatcctgctc gcggagacat tgggggctgc
       61 caggatgaac gccaactgtt cattgcttgc ccattttacg gggtcatctt gggcgggtag
      121 aagatggtcg cgcagccttg accagagact tgaactcagc acgatatcgt gcacctcaag
      181 cttcatgatc atgctccact cagggtccgc tgatcgcgaa agatcgccgc gatcaggttc
      241 aggtaagttg ccagactgtg gccgcgcatt aaatcggccc cgcccgctgg tcgccacccg
      301 atgaggtgca cgcagaagtg gccccatccg tgatcatggt gttccctatc gctgcccggg
      361 cctcgggtga agaagtggtt gatcggctga ccctcgctgg tgcggagatc gtggtccgtc
      421 cagaaccact ccggtggcac cgacggatag cccggagtgc cgtgcggaat atcgatcaat
      481 agttcgatat gagccttgtt ccaacccgga gagatggcaa agcgctcgac atagaaccat
      541 gtgccgctct gggtatcgaa gcggacatca ccgacctgtt gcgaaagcat caacgcctcg
      601 gtcttgagtc ggctgagtcg gcgtcgagtt tcgaggtcgt tggccatcga cggcattacc
      661 cagacctgtc agcacacccg taggtgaacg gtgtcactac cgagtagtcg actgcatgag
      721 cgggtagcgg cttgtggtct tcgagcttga cgatctgacc gtcgggcatg ctggccatta
      781 cccagtctga cagcacgctc ttgctgtggc gcttgagatc agcggcggtg ggcctgtcct
      841 cacgcacgtc gacgacctcg ccattaacta tgtaattgcc catctcagcc tccgtttcgg
      901 tcagtcgatt tcaagtttgt cgctgcagcg gtaaacgcca gtaacggaga gcactcggtt
      961 gactcacgcg tgacgttgcg ggcacggatt gtcaccgatc tcgccccgga tgtgtccgct
     1021 cctgacggtg tgggaaaacc cctcagggtc ccggccaatt ttcgaggggg tgcccagtgc
     1081 attcgtgtcc tcatgatccc ttgcagtgtc ttccgtatgg tgttcatcgc gtcgatgcaa
     1141 gggcacgtta cgtttctcgc tgtcgaaagc acaaagttat ggcatgcaca cagagtgaat
     1201 tcgactctga cttcggtgca cggtttgcct tatttgcatt cgtcaattca cagctgggag
     1261 ccgactgtga ccaccctgga cctcgtccag ccggacggtc gctggggtca gcctggatgg
     1321 ctagcttggg gtgcccacag tgcggtggcg gtgctgaccg atgtgctcgt caccgcatgt
     1381 gctcggctct cccgacctca ggagtggaga gccgacatcg cgagccagct atcccatggc
     1441 acagtccagt cgtagatgtc cccatcggcc ccggtcagcg gagttgggct gttggtgacc
     1501 tcgaccgggt ctccgaagat tgcagtttcg tagtatgcct gagcgttccc ggtggataga
     1561 tttacgcagc cgtgggtgac gttggaggcg ccttgcacgc cggtggtttc cggattggcg
     1621 tggatgaatt ccccattatt ggaaatccgc accgcccaat gctcaggtat gttgacgtat
     1681 ccgtaagccc ggttggacat cagcacggtc tgggccttat tcatcactac gtgaatccca
     1741 ctggtggtgt tgcgatttgg gtcggagctc agaccgtagc tggctgggaa gttcatcgcc
     1801 tcctgtccgt cccgaatgac gatcatacga tggctgttga cgtcagcctt gacgatctgg
     1861 gcgcggccga tggtgaactg cgtgctgatg tctgctctgc cgtaggagcc gccgcccaag
     1921 gccacgccgt acagcttggc ggtcacgccg accttggtgc cggtctgcca atagtctttc
     1981 ggccggtagt gtgcccggga accgccatta tcatcgggta gccaggccca cgatccttcc
     2041 gtaggcaccg aagcctgtac ttgcagagcg cgctcaacgg ccgccttgtc agacacgtga
     2101 tcgtcgaatt gcaagatgat cggagcggcg atgccgacgg tgtccccgtc gccgatgttc
     2161 agcgttgcgt gcagttgctg tttcggcttc acggtagtga atgagcctgt gaccggtacg
     2221 gacaggcgat caggaccggc cgcggtgccg ctccaggtgt aggtcctccc gtagcccaat
     2281 ggctccgtac tggtccagct actccggtcc gagctcagcg cgccggcgac gggcctaccg
     2341 tccgggttgg ccagcgtcac ttgctgcaag acgcctccgg tgacccgcac cgagacgggc
     2401 agcgtcggac tgatgttcgt ggccttatcg cccggtagga cgctgacctg cgcctgcggg
     2461 cgcggagggg cactccgccc gaatggttcg gtcggtcccc ctgagcacgc cgtaagcaag
     2521 atcgccaagc caagcaacat caacacgcgc cgcatggttc cccaccgaat ctgcccgatt
     2581 gcccctccgg gacagggtat cgctcctgcc tgtcaggtcg gtgacaatcc agggtggtgg
     2641 cgaagaattg tcggtggcgc ccgacacacc gcgttgatca gccggctcga cgcattgacg
     2701 gcacctcaac gccgaaggtc accgtcaccc gctcggtcgc gcagcggtga ggaagcgccg
     2761 cgagatcgac gccggtgcat tgcaccaacg aggcgtctgc ggcgagcacc gcgatcagta
     2821 gctcacccgg gaccgtcgag tcccagttgg cggtgcacag caagcggtca ccggtggcca
     2881 gacccagcgc cttggcgcgg gcccggcccg cggagaggac ggtctcggtg tccggccccg
     2941 ctccgccgga ctggaaggtg tcgccgtgca ctcgaatctc ggtggcgaag tcccgcacac
     3001 ctgatggcaa taccgcta
//
LOCUS       DASVXZ010000315         2511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_841026, whole genome shotgun sequence.
ACCESSION   DASVXZ010000315 DASVXZ010000000
VERSION     DASVXZ010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_841026"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1357)
                     /locus_tag="VF788_06565"
     CDS             complement(<1..1357)
                     /locus_tag="VF788_06565"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HEX8933844.1"
                     /translation="MTVHGRQGRSRLARTVPLAGLAGRTAGEAVVAALRKRLTGEDSA
                     EFHERTSERYAAMLGHSKGVLMKAGQVLSFVALGALVPPERQRVYQAAMARLQADAPP
                     MAPELASAVVEAELGAPPEEVYAEFDPHAFAAASIGQVHAARLADGRRVAVKVQYPGV
                     DQAIRADLDNTELLATFLQLVGAIMPGSNRLDVRAVAREVAARIGEEIDYRIEASHQT
                     AFVDAYRDHPFIRIPEVVPQLSTRRVLTMDLVDGMRWSQAVAADQQLRDRWGEVIYRF
                     ALGSLRMVGMFHADPHPGNYLFHDDGAVTFLDFGCVNRFSAQQVTLMQRIVAAAIADD
                     AAALWDTFVEIGFLTASDAPTPAELLEWYRDKLQPLVAEQPFTYTPAFAASVVQGYFD
                     RRGATGSVIRRVELPREYVFLTRIDLGLTALLAQLEATGPWAAIRSEWDENGPPATEI
                     GQ"
     gene            1408..2013
                     /locus_tag="VF788_06570"
     CDS             1408..2013
                     /locus_tag="VF788_06570"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8933845.1"
                     /translation="MGDLSTAATRDRIIDAAMELFSEHGYRGTSITRIEQAAGLSPGA
                     GGIYHHFPSKEALLTAGVERQLSRLAALRHIRRLFADLGDLHTELTIAARYVLAELDQ
                     EAQLLRLLASEARHGPRILTDAVVQVVDLTYREFAEWLIDRSGSAVSAQQADAIATIA
                     LGALISARLLPNLLGTAHSKVDDNAIVETWVNALEHLLTTA"
     gene            2100..2414
                     /locus_tag="VF788_06575"
     CDS             2100..2414
                     /locus_tag="VF788_06575"
                     /inference="COORDINATES: protein motif:HMM:NF013499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEX8933846.1"
                     /translation="MRKRTLSDALVGHEGERVVLRGWVHRRRRLSSVSFLILRDRRDL
                     AQIVIRDEIGLRQLDALPEETVVEVEGTVVANLQAVRGFELLYPHITVLSSIADPPPV
                     EL"
BASE COUNT          424 a          851 c          816 g          420 t
ORIGIN      
        1 tctggccgat ctcggtggcg ggagggccgt tctcgtccca ttcactgcgg atcgctgccc
       61 acggaccggt ggcttccagt tgggccagca gggcggtgag tccgaggtcg atgcgggtga
      121 ggaatacgta ctcgcggggg agctcgacgc ggcggatcac cgagccggtc gcgccccggc
      181 ggtcgaagta gccctgcacc acggacgcgg cgaacgccgg cgtgtaggtg aatggctgct
      241 cggccacgag tggttgcagc ttgtcgcggt accactcgag cagttctgcc ggcgtgggtg
      301 cgtcggaggc ggtcaggaag ccgatctcga cgaaggtgtc ccacaaggct gcggcgtcgt
      361 cggcgatcgc ggcggccacg atccgttgca tcagcgtgac ctgttgtgcg gagaaccggt
      421 tgacgcaacc gaaatccaag aacgtcaccg cgccgtcatc gtggaacagg tagttgcccg
      481 ggtgggggtc ggcgtggaac atgcccacca ttcgcaggct gcccagagcg aaccggtaga
      541 tcacctcgcc ccaccggtcc cgcaattgtt gatccgctgc caccgcctgc gaccagcgca
      601 tgccgtccac gaggtccatg gtgagcaccc ggcgggtcga cagctgcggc actacctcgg
      661 ggatgcggat gaatggatgg tcccggtacg cgtcaacgaa ggcggtctgg tggctggcct
      721 cgatgcggta gtcgatctct tcaccgatcc gggctgccac ttcccgggcg accgcgcgca
      781 catcgaggcg attggagccg ggcattatcg ctccgaccag ctgcagaaag gtagcgagca
      841 gctcggtgtt gtccaggtcc gcccgaatgg cctgatcgac accgggatac tgcaccttga
      901 ccgccactcg ccgcccgtcg gccagccgcg ccgcgtggac ctgcccgatc gaggccgccg
      961 cgaacgcatg cgggtcgaac tccgcgtaga cctcctcggg gggcgcgccc agctcagcct
     1021 ccactaccgc cgaggccagt tcaggggcca tcggcggcgc atcggcctgg agccgggcca
     1081 tcgcggcctg gtagacgcgc tggcgctccg gggggaccaa cgcgccgagc gcgacgaagg
     1141 acagcacctg cccggccttc atcagcacac ccttggagtg gccgagcatg gccgcgtaac
     1201 gctcgctcgt ccgctcgtgg aactcggcgc tgtcctcgcc ggtcaaccgc ttgcgcaggg
     1261 cggcgaccac cgcttcacca gcagtccggc cggccagccc ggccagcgga acggtgcggg
     1321 ccagccgact tcggccttgc cgaccatgca cagtcatcac cgctcctcag ttgacgcttg
     1381 acatgcctaa gtaaatactt tggtgccatg ggcgatctgt caaccgcggc gacccgggat
     1441 cgcatcatcg acgcggcgat ggagctgttc agcgagcacg gctaccgcgg taccagcatc
     1501 acccggatcg aacaagctgc cgggctcagc cctggcgccg gcggcatcta ccaccacttt
     1561 ccgtccaagg aagcactcct gaccgccgga gtcgagcggc agctgagccg gctcgccgcc
     1621 ctgcgccaca ttcgccggct cttcgccgac ctcggagatc tgcacaccga actcaccatc
     1681 gccgctcgat atgtgctcgc cgagctcgac caggaagccc aactactgcg gctgctcgcc
     1741 agcgaggctc ggcacggacc aagaatcctc accgacgccg tcgtccaggt cgtcgacctg
     1801 acctaccgtg agttcgctga gtggctcatc gaccgatctg gctcggcggt atccgcccaa
     1861 caggctgatg ccatcgcgac gatcgcgctc ggcgctctga tctctgcacg actacttcct
     1921 aacctgctgg gcaccgcgca cagcaaggtc gatgacaacg ccatcgtgga aacctgggtg
     1981 aacgcgctcg agcacctgct gacaacggct tagaccccgc tggccgatga aggtgtgggg
     2041 gcaccgcgag cacccgatcg cccacactcc ccggggccta aagcggggag gtggcattca
     2101 tgcgaaaacg tacgttgagc gacgcgttgg tcgggcacga gggcgagcgg gtggtgcttc
     2161 gcgggtgggt tcaccgtcgg agacggctgt cgtcggtatc gtttctcatt cttcgagatc
     2221 gccgtgatct ggcgcaaatc gtcatccgcg atgagatagg tctccggcaa ttggatgccc
     2281 ttcccgaaga gaccgtcgtc gaggtggaag gcaccgtggt ggccaacctt caggcggtgc
     2341 gtggcttcga gctgctttat ccccatatca ccgttctgag ctcgatcgcc gaccctccgc
     2401 cagtggaact gtgacggccc acactgaacg ccacactgcc tgtactactt gatcacgctc
     2461 cggtgctgtg gcgccatccg gtccagcaga ctgtgtggca actggccgcc g
//
LOCUS       DASVXZ010000316         3267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_302892, whole genome shotgun sequence.
ACCESSION   DASVXZ010000316 DASVXZ010000000
VERSION     DASVXZ010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302892"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /gene="cbiQ"
                     /locus_tag="VF788_06580"
     CDS             complement(<1..534)
                     /gene="cbiQ"
                     /locus_tag="VF788_06580"
                     /inference="COORDINATES: protein motif:HMM:NF014420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0032778 - P-type cobalt transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt ECF transporter T component CbiQ"
                     /protein_id="HEX8933847.1"
                     /translation="MLALDAIAYTNRWRPRHPGEKALLSLGLLICAVVLPAWPGALVV
                     GGVATVVLFGPAGLSVRQAAHALRVPLGFVTVGSVPLLFAIGGPTGVRIDPHGLPLAA
                     QLAGRATAALLCLLLFAATTPLADVLPRLARLGVPPAVTEIAALMYRMLFLLLDTVRA
                     VREAQASRLGFRDWSTSY"
     gene            complement(534..854)
                     /locus_tag="VF788_06585"
     CDS             complement(534..854)
                     /locus_tag="VF788_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX8933848.1"
                     /translation="MSRFSVVNMLLFLGVIVLVAVPLIFVSGEFAGSDDQGQAQIEKS
                     HPHYKPWFSSIYEPPSGEVSSGLFAIQAAIGGGALGYYFGVARTRRRIAGGGPAGDSG
                     SRNG"
     gene            complement(859..1563)
                     /locus_tag="VF788_06590"
     CDS             complement(859..1563)
                     /locus_tag="VF788_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0000041 - transition metal ion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HEX8933849.1"
                     /translation="MHIAEGYLPPLHAAAWTVAAAPFVVHGCRALVQQVRADPESKLL
                     LGAAGAFTFVLSALKLPSVTGSCSHPTGTGLGAILFKPPIMSVLGCIVLFFQAVILAH
                     GGLTTLGANTFSMAIVGPWIGYGVYALLRKLGSGQEVAVFFAAALADLSTYCVTSVQL
                     ALAFPDTDSGVLGAALKFGSIFAVTQIPLAISEGLLTVLVMRLLIKTSPGELSRLGVV
                     GDPVRGTRAPAAGLGR"
     gene            1828..2439
                     /locus_tag="VF788_06595"
     CDS             1828..2439
                     /locus_tag="VF788_06595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933850.1"
                     /translation="MGGLKQAAGAFLAVYIVAEIGTATTVEPVQQFSTTFLLATGVSW
                     AAYFEAFGSGAKSFSPLIALVIALVATPVIALATKGKYYLRRPDLQPEARFTPDGTPT
                     TITLDCAVCHLDCERPDMVDCAFHEARLCSLCCTTEQNCKTVCHESQTFLGLLAGAPA
                     NPPVPASRGYPASGHTSRPPLCTVNRFRARMGRGSGRCSVGAR"
     gene            complement(2378..2710)
                     /locus_tag="VF788_06600"
     CDS             complement(2378..2710)
                     /locus_tag="VF788_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8933851.1"
                     /translation="MQDKLDDQDYPAYTMGLAADLLGVQPAFLRSLDAAGLLTPGRSA
                     GGQRRYSRADLTLATRVRELLDENMPLAAAIRIVSLEHQVAAAHQRITELQQSTDRTP
                     DPCEPGTG"
BASE COUNT          585 a         1079 c         1086 g          517 t
ORIGIN      
        1 gtaagaggta gaccagtcgc ggaagccgag ccggctggct tgggcttcgc gcaccgcgcg
       61 gaccgtatcg agtagcagga acagcatccg gtacatcagg gcggcgattt cggtgaccgc
      121 cggagggacg ccgaggcggg ccaggcgggg cagcacgtcg gccagcgggg tggtggccgc
      181 gaacagcagc aggcacaaca gcgccgcggt ggcgcggccg gcgagttggg ccgcaagcgg
      241 tagcccatgc gggtcgatcc gcactccggt gggccctccg atggcgaaca gcagcggcac
      301 cgaaccgacc gtgacgaagc ccagtggcac ccgaagcgcg tgcgccgcct gacggacgct
      361 cagccccgcg ggtccgaaca agaccaccgt ggcgactccg ccgaccacca gcgcgcccgg
      421 ccatgctggc aacaccactg cgcagatcag caacccgaga gacagcagag ccttctcacc
      481 gggatgccgt ggacgccacc gattggtgta ggcgatcgcg tcgagtgcaa gcatcagccg
      541 ttccggctcc cgctatcccc ggcagggccg ccaccagcaa tgcgccggcg ggtccgggct
      601 accccgaagt agtagccgag ggcaccgccg ccgatcgcgg cctggatcgc gaacagcccg
      661 ctggagacct cacccgaggg cggttcgtag atcgaggaga accacggctt gtagtggggg
      721 tgactcttct cgatctgcgc ttggccttga tcatccgagc ccgcgaattc cccggagacg
      781 aagatcagcg gcactgcgac cagcacgatc acgccgagga acagcagcat gttgaccacg
      841 ctgaacctgc tcatgcccct acctccccag tcccgccgcg ggtgcccgcg tgccgcgcac
      901 tgggtcaccg accaccccga gacgactcaa ctcgcccggg ctcgtcttga tcagcagacg
      961 catcaccagc acagtgagaa gtccctcgct gatcgccagc gggatttggg tgactgcgaa
     1021 gatggatccg aacttcagcg ccgccccgag caccccggaa tcggtgtcgg ggaaggccag
     1081 ggcgagctgg acgctggtca cacagtaagt ggacaggtcg gctagggccg cagcgaagaa
     1141 caccgcgact tcctggccgc tgccgagctt gcggagcaag gcgtacaccc cgtagccgat
     1201 ccacggcccc acaatcgcca tcgagaacgt gttcgctccg agcgtggtca agccaccgtg
     1261 ggccaggatc accgcctgaa agaacagcac gatgcaacca agcacactca tgatcggagg
     1321 tttgaacaag atcgccccga gtcctgtccc ggtggggtgg gaacatgacc cggtcaccga
     1381 gggcagcttc agcgcggaca gcacaaaggt gaacgcccct gccgcgccga gtagcagttt
     1441 cgactccgga tcggcccgga cctgctgcac cagggcacgg caaccgtgga cgacgaacgg
     1501 cgccgcagcc accgtccagg cggcggcgtg cagcggtggg agatacccct cggcgatgtg
     1561 catgacccgc ctcctcggtc aaccgcggtg cgtcgcgcgc ctgcggcctg gtttcggctt
     1621 gccggacctc ccaccgctcc ggtctgccag aaactttcca tttgacattg ttccattagg
     1681 aaaatctgat cgtacaagca gatatcgtgt catcgagtcc aagggacgtc tagatgccct
     1741 cgtgttcact tccgcgtcac atcacgcgac cgcgtacgga acatgcacct ttcacgatcg
     1801 gggagcacga ctggaggggt gactgcgatg ggcggcctca aacaagcggc cggtgcgttc
     1861 ctggccgtct acatcgtcgc ggagatcggg acggccacca ccgtggagcc ggtacagcag
     1921 ttcagcacca cgttcctgct ggccaccggg gtgtcatggg cggcgtactt cgaggcgttc
     1981 ggctccggtg ccaagtcctt ctcgccgctg atcgcgctgg tgatcgcgct cgtcgcgacg
     2041 cccgtgatcg cgctggccac gaagggcaag tactacctga ggcgtccgga cctgcagccc
     2101 gaagcccggt tcacgcccga cggcacgccc acgaccatca ccctcgactg cgcggtatgc
     2161 cacctggact gcgagcggcc ggacatggtt gactgcgcct tccacgaggc gcgcctgtgc
     2221 tcgctgtgct gcaccaccga gcagaactgc aagaccgtgt gccacgagag ccaaacgttc
     2281 ctgggcctcc tagcaggcgc tcctgctaac ccacccgtac cggcgtcccg cggttacccc
     2341 gcgtctggtc acacatcccg gccaccgctg tgcaccgtca accggttccg ggctcgcatg
     2401 ggtcgggggt ccggtcggtg ctctgttgga gctcggtgat gcgttggtgg gcggcggcga
     2461 cttgatgttc gaggctgacg atgcggatgg cggcggccag gggcatgttc tcatcgagca
     2521 gttcacgtac ccgggtggcg agagtgaggt cggcgcggct gtagcggcgc tgcccaccgg
     2581 cggagcgacc tggggttaag agcccggcgg cgtcgaggct gcgcaggaag gccggttgca
     2641 cgccgaggag gtcggcggcc aggcccatgg tgtaggcggg gtagtcctgg tcatcgagtt
     2701 tgtcctgcat gccccgtggt ggtgtcacct aatccccgga atcgcgaacg ggtccctggc
     2761 cgccgtcctg ttcgcggcgg ccagggacca gcgtttggat ggctccgtcc cggtgctgtt
     2821 accaagacgg agagcgctct ccggtggacg gcggtaaacc ccttagggag tatcgccgcg
     2881 cggtccggtt agtcccgggc cgggtgatct cggtgcgaga gcgcaacgca ccgtcgccac
     2941 cagtgtcaca gtccgcggct atcacctcct tgcgaaggaa caacatcgtg ctgtgtgcga
     3001 gagcgatcct agcgtagctt agctcaggtt gtctagctgc cggtgctgtg tcggtgtcgc
     3061 ggccaccgtg ggcaagcgac cgccgggacc gaggcgtggg cagcgtcgga agcgcccatg
     3121 acatcgccta cccgcgtcac atgtctagtg aaccggtctt tcaggtagcg atcggtaact
     3181 cctgagtctg aggatggcaa gaacaatcag gtgaggggaa catcttcact gccatgcaca
     3241 ttggcagtag taccgaagca ctgctac
//
LOCUS       DASVXZ010000317         2231 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_841169, whole genome shotgun sequence.
ACCESSION   DASVXZ010000317 DASVXZ010000000
VERSION     DASVXZ010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_841169"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1591..1893
                     /locus_tag="VF788_06605"
     CDS             1591..1893
                     /locus_tag="VF788_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933852.1"
                     /translation="MLLLTFLTTIRAIYYFSHDFSGEQGAVMQPYMIELYIKALHEKR
                     EREAEYERLVALANRSRRQRRLADRPRWLIRFLHPRQTRNHDETPWKPTLDMNSHR"
BASE COUNT          412 a          672 c          696 g          451 t
ORIGIN      
        1 cgctgggctg accgcaccct gcacttgaac accaccggcc gcctctcgcg gcacagctag
       61 cccgcattca gcggtgggtg ccacggcgct gcgagggtcc atcaccccga aagatcactg
      121 cgggcggatg agggcgcctc ccgacggcat ggccgccgtg atcgtccgcg gccggcaggc
      181 ctcatcgggg cggcgctagc ctgatttgcg taccccttcg ccggatggag tggtggtgct
      241 ccttcgtgga ccttggtgac gcacgcacga tcgaccggcg gccgcgtgag gtccgacact
      301 ggcggggatg gcttcctgta tcacctgcca cgttctctca accggctcac gtagtacccc
      361 gcgtactgag attgatgttg cccagcggga caagatagac gtgctgtcat cggcaaagag
      421 ggcaagacgc tcgtgtctgc gccacctgcc atgaccacat ctatcaccgg cgatccaccg
      481 tgacacccaa cacggagtaa tcaccggaga actggacgat tggaaagatc acttccggtt
      541 cgggggaggg ttgtcgggag ctggaccacg caagtgggac ctcacctgac ggcctacctc
      601 gcgctatggg ttctgctacc gagacgtcga ggtgctgctg gttgagcgcg gcatccaagt
      661 tgaccatcca accggtgggt ccttgtggat ggggatcatg cggtaaccgc cgtgggggat
      721 tgggccaagc ttgtgagggg cttcttggcg ggcggctacc acgcaccgtt cggggggccg
      781 ccggtcaggt gagcgaccag ggcccggggg tttctatcgg tacacgaaat tcggttgctg
      841 gtgtatcagc agggacttat tctttgtttt aatttcctgg aagcggtcgt tgcctgtggc
      901 cgaccagggc ggatcacccg gtgattgtgc ctgggcggag cgggaaggag gtgtcccgat
      961 ggaggcacgc atggccatcg gagttcgtta cgtcccgcgg ttcgggtcgc tcgctgtggt
     1021 tgaggatcta gtcgcgagcg tttgcggacg tgccgtttgg tgcggtccgg ctgtgcgctg
     1081 agcgcacttt ccgtcgcacc gtcatcgacc cgactggtat tgatttttcg gtgaccgcgg
     1141 catgcctcta cccgcatcgg tggtcttgat tttcgggcta gcagtgtccg gctcaaaggc
     1201 cgccaaccct ccacggaatc cacggccttg atgcgtttgc aaggttcatc tgcgtcggtc
     1261 agtgccagcg agctccacgg gcaccctgat cggcattaaa cctcgcgctt aacacattct
     1321 ctgaagagga gtgatggaca tgactgtcgt ccgaactggt ttggtggtca ctttcttgct
     1381 gagcgtgctc attggcggcg cgctcaccga gcaggcacta gagtcgcgaa cgcgacgaca
     1441 agcagccatg cagcgcgccc tcatcaatca gagacaagaa cttgaggctc agtcacaggt
     1501 gattgccgtc aacggcagcc ggagaattcg atcttcccta cacgtaggca gcctgccgat
     1561 gccatggtac gacgatctca ccgaccttga gtgttgcttc tcacctttct cacaactatt
     1621 cgcgcgatct actacttcag ccacgacttt tctggcgaac aaggtgccgt tatgcaacca
     1681 tacatgatcg aactctacat caaggcgtta cacgagaaac gtgaacgcga agctgaatac
     1741 gaacgactag tggcgttggc caatcgatca cgccgccagc gtcggctcgc tgacagacca
     1801 cgctggctca tccgtttcct gcatccccgt caaaccagaa atcacgatga aacgccctgg
     1861 aaacctacgc tcgacatgaa cagccaccgt tgacacgcgt ccgagtcgag gtcgatcgca
     1921 cccggaccaa gccgttgcga taccactgac cagggagcgg gcaaacgacg gcgaggccac
     1981 tcgtcgcctc aatccaacga cgctcgacca gcggtttagg ggcgggtgga gcgccggccc
     2041 tcaacggccg gcgggtgacg accgatcgag cctggtcggg tcacccgggg ctcgatgagt
     2101 tgcggactgc gccaacgcaa cggtcccagg ttgatcggtg ccaccaatca acctgtgccg
     2161 tttctagctg ttctggcgtg ttcgatcggc ggtgggtagg tccatggagg gtgtcgttgg
     2221 ccccattctg g
//
LOCUS       DASVXZ010000318         2094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_392849, whole genome shotgun sequence.
ACCESSION   DASVXZ010000318 DASVXZ010000000
VERSION     DASVXZ010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392849"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /locus_tag="VF788_06610"
     CDS             <1..498
                     /locus_tag="VF788_06610"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8933853.1"
                     /translation="GLAGRQDNDLRAAHHGYRIPTKCHRLATIAGSVVSLRRISPTVR
                     SVSTGFSVDIMGLQVTDHGPDMRVVTVTGEIDVVTAPDLADCLTTQLARSQVVVVDLD
                     GVRFLGSAGVAALFEANELATRQGRDLQLVSHSRTANLALTVTGLGRCFTFADSVRDA
                     LEHVL"
     gene            complement(572..655)
                     /locus_tag="VF788_06615"
     tRNA            complement(572..655)
                     /locus_tag="VF788_06615"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(619..621),aa:Leu,seq:caa)
     gene            867..1490
                     /locus_tag="VF788_06620"
     CDS             867..1490
                     /locus_tag="VF788_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005157321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8933854.1"
                     /translation="MNQQTNTTVLATEAERSVTARRVLVAEDEALIRLDLIEMLSEEG
                     YVVVGEAADGQEAVEQAEALRPDLVIMDVKMPKMDGIDAASIIAERRIAPVVILTAFS
                     QRELVVRARDAGAMAYLVKPFGRRDLLPAVELAVSRFRELVTLESEVAGLTDRLETRK
                     TVERAKGLLMARHGLTEPEAFRWIQRSAMDRRTTMKVVAQAILESLS"
     gene            1621..>2094
                     /locus_tag="VF788_06625"
     CDS             1621..>2094
                     /locus_tag="VF788_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8933855.1"
                     /translation="MAQRTVVRAAALVGALSIALAGCGRANTTAQGPASGSPAAKKCE
                     PAQAKASGQPSTTPLKIGTLLPETGSLSFLGPPEFAAVDVAIKEINASGGVLGNPVAN
                     IRGDSGDDKTDTANQTVDRELGQGAQVIIGAAASGVTKLVIDKITGAGVVEFSPAN"
BASE COUNT          368 a          684 c          698 g          344 t
ORIGIN      
        1 gggctggctg ggaggcaaga caacgatctg cgggcggccc atcatggtta ccgcataccg
       61 accaaatgcc accgcttagc gacgatcgcc ggctctgtgg tatctctgcg tcgcatcagt
      121 cctaccgtgc ggagcgtgag cactggcttc tcggtcgaca tcatgggtct acaggtgacc
      181 gaccacggtc ccgatatgcg cgtggtgacc gtcaccggtg agattgacgt ggtgactgcg
      241 ccggacctgg ctgactgcct gaccacgcag ctggccagga gccaggtggt ggtggtggac
      301 cttgatggtg ttcgattcct gggatctgct ggcgtggctg ctctcttcga ggccaacgaa
      361 ctcgccaccc gccaaggccg cgacctgcag ttggtatctc actcccgaac cgccaatctg
      421 gccttgacgg tcaccggcct cggcaggtgc ttcaccttcg ccgacagtgt gcgggacgcc
      481 ctggagcacg tcctctgacg catgcgcctg ccgtcgagca cgcccgcgac ggattggcgt
      541 acccatctgc ccggtatacc catccgcacg gtgccgggag cgggactcga acccgcatgt
      601 ccgtgaggac agacgctttt gaggcgcccg cgtatgccta ttccgccacc ccggccagca
      661 attactcagc gtcaaaccac ccgcatgcta gcagtgcccg agcgtcgtgc ctccgcagcc
      721 tcatggccgc gggcggcggt cccttcaccg ggcaggtgtt ggcgggatca cggttcgagc
      781 tagcgggaac ggcaccgttg ggcccccgac atggctatcg tgcgaaatct aggggccgca
      841 gccgcaaggg acggaggtct ccaggcgtga accagcaaac caacacaact gtgctagcca
      901 ccgaggcgga gcggtcagtg accgcgcgcc gggtgctggt cgccgaggat gaggcactga
      961 tccggctgga cctgatcgag atgctctccg aggagggcta cgtcgtggtc ggtgaggccg
     1021 ctgacggcca ggaggctgtc gagcaggccg aggcgctccg ccccgatctg gtgatcatgg
     1081 acgtgaagat gccgaagatg gacggcatcg acgcggcgtc gatcatcgcg gagcgccgca
     1141 tcgcccccgt ggtgatcctc actgcgttca gccagcgtga gctggtggta cgggcccgcg
     1201 acgcgggcgc catggcctac ctggtgaagc ctttcggccg ccgggatctg ctaccggcag
     1261 tcgaactagc cgtgtcgcgc tttcgcgagt tggtcacgtt ggagtcggag gtagcaggtc
     1321 tgaccgatcg gttggagacc cgcaaaacgg tggaacgcgc caaggggctg ctgatggctc
     1381 gccacgggct caccgagccc gaggcgttcc gctggatcca gcgcagcgca atggaccgcc
     1441 ggaccaccat gaaggtggtg gcccaggcca tcctcgaaag cctctcctga gcatcacatc
     1501 ttcgtcacga caaccgctcg atcctgccta tcggacaccg gcggcattac ggtctgacga
     1561 tcacatcgcg ggacgctgta tccaggcgcc cgcaccaggt gtctgtcctg aggagagagc
     1621 atggcccagc gcaccgttgt ccgtgcggcg gccctcgtcg gcgcgctgtc gattgcgctg
     1681 gcgggttgcg gtcgagcaaa caccaccgcc caaggcccgg ccagtggcag tccagcggcc
     1741 aagaagtgtg aacccgcgca ggccaaggcc agcgggcaac cgagcaccac accgttgaag
     1801 atcggcacgc tgctcccgga gaccggcagc ctgtcattcc tgggcccacc cgagttcgcg
     1861 gcggttgacg tggcgatcaa ggagatcaac gcgtccggcg gggtgctggg caatccggtc
     1921 gccaacatca gaggtgattc cggcgacgac aagaccgaca ccgcgaacca gacggtggat
     1981 cgtgaactcg ggcagggcgc ccaggtgatc atcggagctg ccgcatccgg cgtgaccaag
     2041 ctggtcatcg acaagatcac cggcgccggc gtggtcgagt tctcaccggc caac
//
LOCUS       DASVXZ010000319         1722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_661236, whole genome shotgun sequence.
ACCESSION   DASVXZ010000319 DASVXZ010000000
VERSION     DASVXZ010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661236"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..1396)
                     /locus_tag="VF788_06630"
     CDS             complement(143..1396)
                     /locus_tag="VF788_06630"
                     /inference="COORDINATES: protein motif:HMM:NF033550.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEX8933856.1"
                     /translation="MDERGLFTAALGLSEPWRVTRSEFDAEATQLDLYLDFERGARFA
                     CPAKDCAHGFCPVHDTVDKTWRHLDFFQHRALLHARLPRVRCPEHGVRLVSVPWARPG
                     SGFTLLFEALVLSFAAAMPMAKVAKMTREQDTRIWRVVEHHVHAARDQLDYSGVTRVG
                     MDETSAAKGQDYISIFADLEARRVVFATEGRSAETVARFAADLAEHGGDPEKVTDTSS
                     DMSTAFISGITAHLPNATMTFDRYHLAAKLSEAVDAVRRAEVGIRPELKHTRWLWLKN
                     WANLSATQRRDLYHLMRPSAQLATARALRWREDFQAFYDQHPSYAPEYLRRWCYGAKR
                     SRLQPIKDVVTLIEKHFDGIIAWHKNHLSNGLLEGINSLVQAAKARARGYRSKTKMIT
                     IVYLTAAKLQLPSLTNPTPAYMSSR"
BASE COUNT          301 a          532 c          583 g          306 t
ORIGIN      
        1 ctgttcggca agtcgcgatc aggccgccta aacggagaga ggaggacagc tatggacgag
       61 tcaaagccgg agaagagagg acctgtgaac gtcgtggtct ataccgtcga ggaagggctc
      121 ttcgctgttt taagtgggtt actcagcgtg aggacatgta ggcgggtgtg gggttggtga
      181 ggctgggtag ctggagcttg gccgcggtga ggtagacgat ggtgatcatc ttggtcttgc
      241 tgcggtagcc ccgggctcgg gccttggcgg cttggaccag agagttgatc ccttcgagca
      301 ggccattgct gaggtggttt ttgtgccagg cgatgatgcc gtcgaagtgc ttctcgatga
      361 gagtgacgac atctttgatc ggttgcaggc gggagcgttt cgcgccgtag caccagcgtc
      421 gcaggtactc gggtgcgtag ctggggtgct ggtcataaaa ggcttggaaa tcctcgcgcc
      481 agcgcagcgc tcgggcggtg gccagctgcg ctgaggggcg catgaggtga tataggtcgc
      541 ggcgttgcgt ggccgagagg ttcgcccagt tcttcagcca cagccagcgg gtgtgcttga
      601 gctccgggcg gatgccaacc tcggcgcggc gtactgcgtc aactgcttcg ctgagcttgg
      661 cggccaggtg gtagcggtcg aaggtcatgg tcgcgttcgg caggtgcgcc gtgattccgg
      721 agatgaatgc ggtgctcatg tcggagctgg tgtcggtgac cttctccgga tcgcccccgt
      781 gctcggccaa atcagcggcg aagcgggcga cggtctcggc ggagcgtccc tccgtggcaa
      841 agaccacccg ccgggcctca aggtcggcga agatgctgat gtagtcctgg cccttggccg
      901 cggaggtctc gtccatcccg acccgggtca cccccgagta gtccagctgg tcgcgggcgg
      961 cgtgtacgtg gtgttccacc actcgccaga tcctggtgtc ctgctcccgg gtcatcttcg
     1021 cgaccttcgc catcggcatc gccgcggcga agctgagcac cagggcctcg aacaacagcg
     1081 taaaccccga ccccgggcgc gcccagggca cgctcaccag ccgcacccca tgctctggac
     1141 agcgcacccg cggtagccgg gcatgcagca acgcccggtg ctggaagaag tccagatgcc
     1201 gccacgtctt gtccacggtg tcatgcaccg ggcagaaacc gtgcgcacag tccttggccg
     1261 ggcaggcgaa tcgggcgccc cgctcgaagt ccaaatacag gtccagctgg gtggcctcgg
     1321 cgtcgaactc gctgcgggtg acccgccacg gctcgcttag ccccagcgcc gccgtgaaca
     1381 acccccgctc atccataccc cccgcaaacc ccctgctacg tgaccatcac gaacagtcac
     1441 gcacccaacg aaaccatcac cccctcgtca acccgccacg ccgggatcac acccacttga
     1501 tcaccaaacc cacttgatac agcgaggaac cattacccgg cgtaaagatc cgctggatgg
     1561 tcaacgtgtg cgggtgctgg gccggttgcg ccggcatggt caggcagaac tgctggtgat
     1621 gctgccggat ggcagcaagc gaatgatccc gcgcgcgtgg actgacgccg atgaggccaa
     1681 gtcggcggac gcgagtggcc aggccgcgac gctgggcatg ct
//
LOCUS       DASVXZ010000320         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_34140, whole genome shotgun sequence.
ACCESSION   DASVXZ010000320 DASVXZ010000000
VERSION     DASVXZ010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34140"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..624)
                     /locus_tag="VF788_06635"
     CDS             complement(19..624)
                     /locus_tag="VF788_06635"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEX8933857.1"
                     /translation="MTTALNVAYPGTTLCFNGGDLTGTDLNLTRSGAANTPITLMTDG
                     ATVRSIHITADHVVVEGFTVTGGDGIVLKGGDLAIRHNTVHDTRQGGITCESCENSLI
                     EANTVQHVDTVGIRISGQRIEVSHNTVSGTVAVDNGDADGIRFFGSGHRITGNTIADI
                     SDHGYANPPHPDCFQTYDDNSPPTFDVLIAGNICRNLGRNA"
     gene            complement(978..>1523)
                     /locus_tag="VF788_06640"
     CDS             complement(978..>1523)
                     /locus_tag="VF788_06640"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX8933858.1"
                     /translation="PAAEIQVTSILSDRHRIKDPGQRDFEVQSLGSRLKSFNEILRIL
                     TLFTAAVAAISLIVGGIGVLNIMLVTVTERTREIGIRKALGATRRAILQQFLIESIVL
                     TSIGGMLGILVGVGLSFLGGAIAPNFDSSSGAFSSFSPVVSIPSVIVAFTVSLGIGLV
                     AGGYPANRASRLRPVEALRYE"
BASE COUNT          254 a          448 c          531 g          290 t
ORIGIN      
        1 gctggtcgcc ggtggcgatc aggcattgcg cccgaggttg cggcagatgt tgcccgcgat
       61 gaggacgtcg aaggtcggcg ggctgttgtc gtcgtaggtc tggaagcaat ccgggtgtgg
      121 cgggttggcg tagccgtgat cggagatgtc cgcgatggtg ttgccggtga tccggtggcc
      181 gctgccgaaa aaccggatgc cgtcggcgtc gccattgtca acggcgacgg tcccgctcac
      241 ggtgttgtgg ctcacctcga tccgctgccc actgatcctg ataccgaccg tgtcgacgtg
      301 ctgcaccgtg ttggcttcga tgagcgaatt ttcgcaggat tcgcaggtga tcccaccctg
      361 ccgggtgtcg tgcaccgtgt tgtggcggat cgccagatca ccgcctttga ggacgatccc
      421 gtcaccaccg gtgactgtga agccttcgac cacgacatgg tcggcggtga tgtggatgct
      481 gcgcacagtg gccccgtcgg tcatcagtgt gatcggggtg ttcgccgctc ccgagcgagt
      541 caagttcagg tcggtgccgg tgagatcgcc gccgttgaag cacagggtgg tccccggata
      601 ggcaacattc agggcggtcg tcacctcgtc agctcgggtg actgtgcgat tgcaggtagg
      661 cggctgggcc cggtccgggc ccgtggagga gctccgacca ggcggcgggt tctggctgag
      721 ccccgggttc tggttgaacc ccgggttctg ggccggcgag gcgctctgac ccccgcagcc
      781 ggcgataagc accgcgctaa ctgcagcgat cccgacctgc agtgttctcc gcggcgccct
      841 caccggtacc gctgctcgac gtccccggtg aaagatgttc accggtgcag ggtatggccc
      901 cattcaatgt cgccctcact cagcgtcagg gatgcgggat tcaagctggt agagccccgg
      961 acgggagggc tgccgggtta ttcgtatcgc agcgcttcga caggtcgtag ccgggaagcg
     1021 cggttggccg gatacccccc ggcgacgagt ccgatgccga gactcaccgt gaacgcgacg
     1081 atgacagacg gtatagacac gacggggctg aatgaggaga aggcgccgga cgaggaatcg
     1141 aagtttggcg cgatggcgcc gccgaggaac gacagcccta ccccaacgag aatgccgagc
     1201 atgcccccga tgctggtcaa gacgatggac tcgatgagga actgctgaag gatcgcacgg
     1261 cgggtggcgc ccagcgcttt ccgtatgccg atctctcggg ttcgctcggt gaccgtgacc
     1321 agcatgatgt tcaaaacccc gataccgccg acgatcagtg agatcgccgc tacggctgct
     1381 gtgaacaggg tgaggatgcg caggatctcg ttgaacgatt ttaggcggct gcccagggat
     1441 tggacttcga agtcccgctg cccgggatcc ttgatccggt gccggtcgct gaggatgctg
     1501 gtcacttgga tctcagcagc tgg
//
LOCUS       DASVXZ010000321         1500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_393070, whole genome shotgun sequence.
ACCESSION   DASVXZ010000321 DASVXZ010000000
VERSION     DASVXZ010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393070"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            191..1363
                     /locus_tag="VF788_06645"
     CDS             191..1363
                     /locus_tag="VF788_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015765791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISAzo13 family transposase"
                     /protein_id="HEX8933859.1"
                     /translation="MAPFLDERGRRLFTASEARAAGRGGVTAVATATRVARSTIGRGL
                     AELRLGRDDLGSRIRRPGGGRKPAVETQPGLLEALGELVQSAIRGDPEAALLWVSKSQ
                     RHLARALTERGFAAGQKLVGRLLRRLGFSLQANSKTREGTSHPDRDAQFEYINARVKA
                     WQTAGQPAISVDTKKKELVGDFKNGGRELRPKGQPEAVRVHDFALPDLGKVAPYGVYD
                     IAANAGWVKLGIDHDTAAFAVESIRRWWRDLGRPRYPTATRLLITADCGGSNGVRVRL
                     WKRELQGFADETGLSVTVAHLPPGTSKWNRIEHRLFAFITQNWRGKPLLTHQVIVQLI
                     ASTTTRTGLTVRCRLDRSAYAKGVRVSDAEMATLNLQPAAFHGEWNYTIRPRQPTD"
BASE COUNT          269 a          519 c          495 g          217 t
ORIGIN      
        1 tgtccctcgc ggaaccgccc ggtccagaat ggggctaagg gcttgagccc gaacaaccga
       61 atcgatgcga ggagaacggg tgagccagca agccagggct tggagccggg cagcggtgtg
      121 atttggagcc cggagtgtct aggctgctgg ggtgatcgat atctctggca ttcgaacacg
      181 cttcgaggcg atggcgccat tcctggacga acgggggcgg cgcctgttca cggcgagcga
      241 ggcgcgggca gcaggccgcg gcggtgtaac ggcagtggct acggcgaccc gtgtcgcgcg
      301 gagcaccatc ggccgcggcc tggccgaact gcgcctcggg cgggacgacc tcggcagccg
      361 catccgccgc cctggcggtg gacgcaagcc ggcggtggag acgcaacccg gcctgctgga
      421 ggctttaggc gagctggtgc aatcggccat ccgcggcgat cccgaggccg ccttgctgtg
      481 ggtcagcaag agccaacgcc acctcgctcg cgcgctgacc gagcgcggct tcgccgccgg
      541 ccagaagctg gtcggccgac tgctgcgccg gctcggcttc agcctgcagg ccaacagcaa
      601 gacccgcgag ggcacaagcc accccgaccg cgacgcccaa ttcgaataca tcaacgcgcg
      661 ggtgaaggcc tggcagaccg ccggccagcc ggcgatctca gtcgatacga agaagaaaga
      721 gctcgtcgga gacttcaaga atggcggccg tgagctgcgc cccaagggcc agcccgaagc
      781 ggttcgggtg cacgatttcg ctctccccga cctgggcaag gtggcgccct acggtgtcta
      841 cgacatcgcc gcgaatgcgg gatgggtcaa gctcggcatc gatcacgaca ctgccgcctt
      901 cgccgtcgag agcatccggc gctggtggcg ggacctcggc cggccacgct atcccaccgc
      961 cacacggttg ctgatcaccg ccgactgcgg cggcagcaac ggcgtacggg tccggctgtg
     1021 gaagcgcgag ttgcagggct tcgccgacga gaccgggctg tcggtcacgg tggcccacct
     1081 gccgccgggc accagcaagt ggaaccggat cgagcatcgg ctgttcgcct tcatcaccca
     1141 gaactggcgc ggcaagccac tgctgaccca ccaggtgatc gtccaattga tcgccagcac
     1201 caccacccgc accggcctca ccgtccggtg ccgcctcgac cgcagcgcct acgccaaggg
     1261 cgtcagggtg tccgatgccg agatggccac cctcaatctt cagcccgccg cctttcacgg
     1321 cgaatggaac tacaccatca ggccacgaca gcccacagac tgacgcggtt gttcgggctc
     1381 aggccctaag catcctcacc gacgtcgaaa cctgccgctt cttcacaact ggtccgcatt
     1441 cctaatcgca tattgcggtt cgcgggctcc gcgatcgcaa agccgaacga tcccgtggcc
//
LOCUS       DASVXZ010000322         2536 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_214117, whole genome shotgun sequence.
ACCESSION   DASVXZ010000322 DASVXZ010000000
VERSION     DASVXZ010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214117"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1299)
                     /locus_tag="VF788_06650"
     CDS             complement(<1..1299)
                     /locus_tag="VF788_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933860.1"
                     /translation="MKHVTPDQWLYVLAPFLIYGVIVAVLSVLGWESSLRANLHRNPL
                     VIFFKSISAGLERTTGYPGWAMAGALSGLCALGTAAVGLYWDVAWHIDFGRDKELFTP
                     PHTMIVIGLAGIVYSACIAVLFATLDDAPVGRYLLDLRIPYSAIPMAALGIGALISFP
                     LDALWHQAYGLDVTLWSPTHLILVGGGGLATIATWLMLIEGRPAGRATLLGRGIAALT
                     LGAILVGLSCFEGEFDFGVPQFQVLYFPVLITAAAGFTLVLARVALGPWGAIKAVVAY
                     LIVRGSVALIVWGALHHTFPRFPLYLASALMVEAVAAWLGTDNRLRYALVSGVAIATL
                     GIAGELAWVKLSGWGDLPANDARIFLVVPAAAIAAAVLGGALSRPVLGRSGKAQRAVP
                     GLTAGLAGLVLAGTLLALLPRNVGNVNATIRLTPVGQQATV"
     gene            complement(1296..2066)
                     /locus_tag="VF788_06655"
     CDS             complement(1296..2066)
                     /locus_tag="VF788_06655"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8933861.1"
                     /translation="MEQSAGMTVDELARQARTTTRNIRNYQTLGLLPPPSLVGRVGYY
                     HEGHLGRLRLIARLQEQGFTLAGIRELVEAWEQGRSLGDLLGFEQVLTIPWSVEEPEY
                     LTAEELLELFPQAAQDSSLGLRAIDLGLIQPEAERFRVPSPTMLRAGAELVAAGIPLA
                     ATQDEFAALRADMERVAARFVELFERYVWQPFAEAGMPSERLPEVTEALRRMRPLAAT
                     SVQAMLARAMEHQSAASTAAQVKLISNGGPAPGQEVQQ"
     gene            2345..>2536
                     /locus_tag="VF788_06660"
     CDS             2345..>2536
                     /locus_tag="VF788_06660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933862.1"
                     /translation="MTDQPFDASPERIRALQELVLATDTLQDFLGHVARQAASIGPDL
                     CCGITVSTDPRRPLTVGTSD"
BASE COUNT          488 a          825 c          841 g          382 t
ORIGIN      
        1 gacggtggcc tgctggccca ccggggtcag ccggatagtt gcgttgacgt tgcccacgtt
       61 acggggcagc agggcgagca gggtgccggc caggaccagg ccggccagtc cggcggtcag
      121 cccgggtacc gcccgctggg ccttgccgga ccggcccaac actggtcggc tcagtgcacc
      181 accgagcacg gcggcggcta tcgccgcggc cgggacgacg aggaagatcc gggcgtcgtt
      241 ggcgggcagg tcgccccagc cggacagctt cacccaagcc agctcgccgg ctatgcccag
      301 ggtggcgata gccactccgg agaccagggc gtagcgcagg cgattgtcag tgcccagcca
      361 tgcggccacg gcttccacca tcaaggcgct ggccaggtac agcgggaacc tggggaaggt
      421 gtggtgcaaa gcaccccaga cgatgagggc gacgctaccg cgcacgatga ggtacgccac
      481 taccgccttg atcgctcccc acggtccgag ggcaactcga gcgaggacga gggtgaaacc
      541 ggcggcggcg gtgatcagta ccgggaaata gagcacttgg aactggggca caccgaagtc
      601 gaactcgcct tcgaagcagg acaggcccac caggatggcg cccaaagtca aggctgcaat
      661 gccccggccg agtagggtgg cgcgcccggc tgggcggccc tcgatgagca tcagccaggt
      721 cgcgatggtg gccaggccac caccgcccac cagtatcaga tgagtcgggc tccacagggt
      781 gacgtcgagg ccgtacgcct ggtgccataa cgcgtctagc gggaaactga tcaatgcgcc
      841 gatgcccagc gcggccatgg ggatcgccga gtaggggata cgtaggtcaa ggaggtacct
      901 cccgaccggt gcgtcgtcga gggtggcgaa cagcacggcg atacacgcgc tgtagacgat
      961 gccggccagc ccgataacga tcatggtgtg gggcggggtg aacagctcct tgtcccgccc
     1021 gaagtcgatg tgccaggcga cgtcccagta cagaccgaca gcggcagtgc ccagcgcgca
     1081 taggccgctc agcgcgccgg ccatggccca gcccgggtag ccggtcgtcc gttccaaccc
     1141 ggcggaaata ctcttgaaaa agatcaccag gggattgcgg tgaaggtttg cccgcaggct
     1201 ggattcccag cccaggacag acaggaccgc cacgatgacg ccatatatca aaaagggtgc
     1261 taacacgtac agccactggt ctggggtcac gtgtttcatt gctgcacctc ctggcccggc
     1321 gcaggaccac cgttggagat caacttgacc tgagcggcgg tggacgcagc cgactggtgt
     1381 tccatggccc gagcgagcat cgcctgaact gacgtggcag ccagtggacg catgcgccga
     1441 agcgcttcgg ttacctcggg gagtcgctcg gacggcatcc ccgcctcggc aaagggctgc
     1501 cacacgtagc gctcgaacag ctcgacaaag cgagctgcga cgcgctccat gtcagcgcgc
     1561 aatgccgcga actcgtcctg ggtagcggcc agtggaatgc ccgcggcgac cagctcggcc
     1621 ccagcccgga gcatggtggg actgggcacc cggaaccgtt ccgcctcggg ctggataaga
     1681 cccaggtcga tagctcgcaa cccgagcgag gagtcctgtg ccgcttgcgg gaacagctca
     1741 aggagttcct cggcggtcag gtactcaggc tcctccacgc tccaggggat ggtcaggacc
     1801 tgctcgaaac cgagaagatc gcctagactc cggccctgct cccacgcttc aaccagttcg
     1861 cggatgcctg ccaaggtgaa gccctgctct tggagccgcg caattagccg cagcctgccc
     1921 aaatgcccct cgtggtaata cccgacccgc cccaccagcg agggtggcgg gagcaggccg
     1981 agagtctggt agttgcggat gttgcgggtt gtcgtgcggg cctggcgggc cagctcgtct
     2041 accgtcatcc ctgcggactg ttccaccaca ggacgagcat aagacgagtt taccatagcc
     2101 acaagttaca tgagatgatg taaaagtggc gccgcggacc tgtgcgcgca ccttgaccag
     2161 caagctctac acgatgcctc acgtcgtgcg gtcgaccacc aagcggcgcg gtttgcgttc
     2221 gtgaggtgac aaggagcaca gtgagtgcag gtcgaaggcc ccttgagtgc gccatcatgt
     2281 gacgttccgt cttcgaagcg atgctctcca cggggactca gggctccccc ggaaagtcga
     2341 catcatgacg gaccagccgt tcgatgcctc ccctgagcgg atcagggcct tacaggagct
     2401 ggtgttagcc accgacaccc tgcaggactt cctcggtcac gtcgccaggc aggccgcctc
     2461 catcggtccc gacctgtgct gcgggatcac cgtgagcacc gacccgcgac gccctctgac
     2521 cgtgggcacc agcgac
//
LOCUS       DASVXZ010000323         7555 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1199915, whole genome shotgun sequence.
ACCESSION   DASVXZ010000323 DASVXZ010000000
VERSION     DASVXZ010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7555
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1199915"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VF788_06665"
     CDS             <1..657
                     /locus_tag="VF788_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5947 family protein"
                     /protein_id="HEX8933863.1"
                     /translation="ARGSTARFQWDITVTTGALQRVIRRSSTRAGVAGERCDMCSAAV
                     QEQHRHVLDEQRGELLCACQACALLFQHDAAGRGHYRLVPNQRVRLPELAPQELGVPV
                     GLAFFVTRVDGSVSAHYPSPIGATQWKVEREVWEGMQKRCPQLRDLTPGVQGLLVNTA
                     RGAREHWIVPIDDCYRLVALVRREWRGLSGGSQVWPAIERFFADLDRRPGSPLRAAHV
                     "
     gene            673..882
                     /locus_tag="VF788_06670"
     CDS             673..882
                     /locus_tag="VF788_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933864.1"
                     /translation="MAEIRVGKPDVKIDAPSHTKGVDQGNAKGSYDKQVGHHKDGTAD
                     ARRSTGVSPKKHNPILPIMPNLPPG"
     gene            1069..2133
                     /locus_tag="VF788_06675"
     CDS             1069..2133
                     /locus_tag="VF788_06675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933865.1"
                     /translation="MSLEHLARAVRKAIVLAVVGMPVLAACSGAGGGPGPTASIVVLR
                     INAPVHKPTWSDHTGALFALTDDHRIAKIDPSGQPSAPPTARTILSAPFPDVAENLVT
                     GSTEAVVYLPQPKLGRIAILSEEDLRQVGTVQAGPAPSFLALDSGSDHLLALSEDRST
                     VTPIDLHDNSVLPFQEVDAGPDAELDGAKRGRLIDYHTAGPMGITHHKGSPGSVENKG
                     GIGISAEKTAGDLTKSSRVYVAESDTGRLLAVDSKRSGDGLEVVAQANLGEPVRYVGV
                     DETRIYAVTEHTLVVLKTNSFEGYHEQTFPVVTRIDFRSALQGEAKNAPLSGLATGPD
                     RVYLTLKGQPCMVSVAKPSI"
     gene            2148..2480
                     /locus_tag="VF788_06680"
     CDS             2148..2480
                     /locus_tag="VF788_06680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933866.1"
                     /translation="MTDETVTSRVVGADADLDLMFAQIKALRKLAMDPDAAQGSARVY
                     DFSIRWGTLLHGRLERLAYYHSRGELAPDEQGRYQVLRSELREALPLVKRLGLASPTV
                     PLDDANPR"
     gene            complement(2503..2772)
                     /locus_tag="VF788_06685"
     CDS             complement(2503..2772)
                     /locus_tag="VF788_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019810785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933867.1"
                     /translation="MGTSDTLRPESTVLTVEHKNRVLQQIQRRRGTCRHCGGEHFLVG
                     DALYLGFLFISEHQDAYMAALTCTNPACPAPHTGIRLRAPEFLDP"
     gene            complement(2772..4235)
                     /locus_tag="VF788_06690"
     CDS             complement(2772..4235)
                     /locus_tag="VF788_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019810783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8933868.1"
                     /translation="MRIEHWVNVLFVTLLIRSGIEILGTHPKLYWRDDSRPGTEWARF
                     TRKTMPTDKLYDTLDEEESYSSIVSLPGHKHLGMGRHWHFVTVMGWILTGIVYYILLF
                     ATGQWHRYIPYSWSIFSDAWNDVLTYLSFKLPALLPGQPLDAVQKLAYAFVIFILAPF
                     QILTGAAQSPAVEAHFPWYVRLWGGRQGARSLHFFGLLAFIGFIAVHLMMVGLWGWPQ
                     LNALMIFGGVRDLGWALAASLVIIAAIVLVHVAATVWSLKSPRMVQRALGFVISQGRL
                     FFLRPMASRQNYSPSQLSPEHRVNGKPPDSDDYKVMAVHNFVSWKLEVGGLVENPMTF
                     TLADLRALGEKQTQRVLHNCVQGWSSIGEWSGVPFRNVVEMVKPLPQARHICFLTMQD
                     TGRDEPAAEGEGQFYEVIDMSLARHPQCLLAYEMNGRPLPIKHGAPLRLRIENQVGFK
                     MAKWIERIEFISDYKGIGDGMGGWREDNVYYDKDVEV"
     gene            complement(4306..4791)
                     /locus_tag="VF788_06695"
     CDS             complement(4306..4791)
                     /locus_tag="VF788_06695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933869.1"
                     /translation="MSAVLRWTGSGKLISFYRYFSFNVPRVTTASGIVLLLGVGAIRL
                     YWLTGGFLVSNFPVYLTACVVLLVIAALLASAAMVVGRRPGLVRIGWALGSVVSAASI
                     AMYVVSRILGLPGLPQLVQRWDYALGTFSMALAAMYLMLHFSVLTGMNVAYPERRQWH
                     D"
     gene            complement(5596..6432)
                     /locus_tag="VF788_06700"
     CDS             complement(5596..6432)
                     /locus_tag="VF788_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigB/SigF/SigG family RNA polymerase sigma
                     factor"
                     /protein_id="HEX8933870.1"
                     /translation="MHRSGEGPRDPATAVASSRSSVDAEHGEYAHLVALHRRHAALVS
                     EDSARQELREQLIKGYLPMAEHIARRFTGRGEPLEDLVQVATVGLINAVDRFEPDHGA
                     HFFSFAVPTITGELRRYFRDHGWSTRVPRRLKDLVVAIRATQRELSQQLGHAPRPSEI
                     AEHLGLSAAEVIEGLQAGEAYQSSSLDEIVSSEDSSTAARGDFLGGLDAELDVIDDRE
                     VLRPLLTQLPSRERTILALRFFRGLTQTQIAEQVGLSQMHVSRVLRQTLTSLQRSMAS
                     SD"
     gene            complement(6387..6815)
                     /locus_tag="VF788_06705"
     CDS             complement(6387..6815)
                     /locus_tag="VF788_06705"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8933871.1"
                     /translation="MAGGAGDVTSAAVTDLRTTASPLAIPTIRTIAADLAARAGFDLD
                     SVDELRIAVDEACALLVQVAAPKAKLKCRFTVRLARVELAAEVGIDDIADPLPVGSVG
                     WELLNCLADEVNALVLPAEPREHGRVCIALVKDRVTPQRP"
     gene            complement(7219..>7555)
                     /locus_tag="VF788_06710"
     CDS             complement(7219..>7555)
                     /locus_tag="VF788_06710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8933872.1"
                     /translation="THRNCEVLHRDLTVLTTPTLSPPMFGVTANGRHRPGPTILSRSG
                     HRRLAGAGQRERHESCGQSKEQVEELQGKSKETTGPTGDNELKAEDKKDQAKAKLKKT
                     GETIKDVFK"
BASE COUNT         1485 a         2448 c         2338 g         1284 t
ORIGIN      
        1 gctcgaggct ctactgcgcg cttccagtgg gacatcaccg tgactaccgg tgcgctgcaa
       61 cgggtcatcc gccggtcctc cacccgcgct ggcgtcgccg gggagcgctg cgatatgtgt
      121 agcgccgctg tgcaggaaca gcaccggcat gtacttgacg agcagcgcgg tgagctgctg
      181 tgcgcctgcc aggcctgcgc cttgctgttc cagcacgacg cggcgggtcg tgggcactac
      241 cggctcgtcc cgaaccagcg ggtgcggttg ccagagcttg ctccgcagga gctcggggtt
      301 ccggtgggcc tggcgttttt cgtcacccgg gtcgacggat cggtcagcgc gcactatccc
      361 agcccgatag gagccaccca gtggaaggtt gagcgtgagg tttgggaggg gatgcagaag
      421 cgctgccctc agttgcggga cttgacgccg ggggtccagg ggctgctcgt gaacaccgcc
      481 cggggtgccc gtgagcactg gatcgtgcct atcgatgact gctaccggct ggtggccctg
      541 gtccggcggg agtggagggg gctctccggc ggcagccagg tgtggccggc gatcgagcga
      601 ttcttcgccg acctcgatcg ccgtcccggc agcccgctgc gggcagctca cgtctgagga
      661 atggaggaac agatggccga gatccgagtc ggcaagcccg acgtcaagat agacgccccg
      721 tcacacacca agggcgtcga ccagggcaac gccaagggct cctacgacaa gcaggtgggg
      781 caccacaagg acggcaccgc cgacgcgcgg cgatccaccg gcgtgagccc caaaaagcac
      841 aacccgatcc tgccgatcat gccgaacctg ccgccgggct gatccgacga tcggccaccg
      901 gaagaactgc agacccgagc tgaaaggaga acggttgtga actggaataa acttatgttg
      961 ttcatcgcgg gagcaggtct tgccgcgttg ttttggaagg agttccccgc gatggtccgc
     1021 tacatcaaaa tggagcggat gtaacaatac ggcgccaaat cttgtggtat gagcctcgaa
     1081 cacctggcgc gtgcggtccg taaggcgatc gtgctcgcgg tcgtgggaat gcccgttctc
     1141 gctgcgtgtt cgggcgcagg tggcgggcct gggcccacgg cctccatcgt cgtcctgcgg
     1201 atcaacgcgc ccgtgcacaa gccgacctgg tccgaccaca cgggagcgct tttcgccctc
     1261 accgacgacc accggatcgc gaaaatcgac ccgtctggac agcccagcgc accacccaca
     1321 gcgcggacca tcctgtcagc gcccttccct gacgtcgcag agaacctcgt taccgggagc
     1381 accgaagcag tggtgtacct cccccagccc aagctcggtc ggattgccat cctcagcgag
     1441 gaggatttgc gccaggtagg aaccgtgcag gccgggccgg cgccatcctt cctcgccctg
     1501 gactccggtt ccgatcacct gcttgccctg tccgaggacc gctcgaccgt gaccccgatc
     1561 gacctgcatg acaacagtgt cctgccgttc caggaagtgg atgcggggcc ggatgcggag
     1621 ctcgacggcg ccaagcgagg acgacttatc gactaccata cggctggccc catgggcatc
     1681 actcaccaca agggcagtcc gggctcggta gagaacaagg gcggaatcgg catcagtgcc
     1741 gagaagaccg ccggtgacct gaccaagtcc tcgcgcgttt acgtcgcaga aagcgacacc
     1801 ggccgtctgc tggctgtgga ttcgaagcgc tcgggggatg gcttggaggt ggtggcgcag
     1861 gccaacctgg gcgagccggt gcgctacgtc ggtgtggacg agacgcggat ctacgcggtg
     1921 accgaacaca cgctggtggt gctcaaaaca aacagcttcg agggctacca cgagcagacg
     1981 ttcccggtcg tcaccaggat cgatttcaga agcgctctgc agggcgaggc caaaaacgca
     2041 ccactgtcgg gcttggccac cggccccgac cgggtgtatc tgaccctcaa gggacagccc
     2101 tgcatggtga gcgtggccaa accgagtatc tgactgggag gggcggggtg accgacgaga
     2161 cggtgaccag ccgcgtggtg ggcgcggacg ctgaccttga tttgatgttc gcccagatca
     2221 aggcgctgcg taagctcgcg atggacccgg atgcggcgca gggcagcgcg cgggtctatg
     2281 acttcagcat ccggtggggg acgctgctgc acggccggct ggagcgcctg gcctactacc
     2341 acagccgcgg tgagctcgcg cccgacgagc aggggcgcta ccaagtgctc cgcagcgagc
     2401 tgcgggaggc gctgccgctg gttaagcggc tggggttggc gtccccgacc gtgccgctcg
     2461 acgacgccaa cccccgataa ccagccccca acggctttgc cctcagggat cgaggaactc
     2521 aggcgcgcgc agccggatgc cggtgtgtgg agcggggcag gcagggttgg tgcaggtcag
     2581 ggcggccatg taggcgtcct gatgttcgct gatgaacaga aaccccaaat acagcgcgtc
     2641 tccgaccagg aagtgctcgc caccacagtg gcggcaggtc ccgcgcctgc gctgaatttg
     2701 ctggaggacc cggtttttgt gctccacggt gagcaccgtg ctctccgggc ggagggtgtc
     2761 gctagtgccc atcagacttc gacgtccttg tcgtaataca cattgtcctc gcgccaaccg
     2821 cccatgccat caccgatgcc cttgtagtcg gagatgaact cgatgcgctc aatccacttg
     2881 gccatcttga aaccgacttg attctcgatc cgcaaccgca gcggggcgcc gtgcttgatg
     2941 ggcagcgggc ggccgttcat ctcataggcc agcaggcact gcgggtggcg cgccaggctc
     3001 atgtcgatga cctcatagaa ctgtccctcg ccttccgcgg ctggctcatc tcgtccggtg
     3061 tcctgcattg tcagaaagca gatgtggcgg gcctgcggga gcggcttaac catctcgacc
     3121 acgttccgga acggcacgcc gctccactcg ccgatgctcg accagccctg aacgcagtta
     3181 tgcagcaccc gctgagtctg cttctcaccc aacgcgcgca ggtccgccag ggtgaaggtc
     3241 atgggattct ccaccaggcc accgacctct agcttccagc tgacaaagtt gtgcacggcc
     3301 atgaccttgt agtcgtcgct gtccggcggc ttgccgttga cccggtgctc aggggacagc
     3361 tgcgatggcg agtagttctg cctggaggcc atggggcgca ggaagaacag ccgaccctga
     3421 ctgatgacga agcctagcgc ccgctgcacc atgcgtggac tcttcaagct ccacaccgtg
     3481 gccgcgacgt gcaccagcac gatcgcggcg atgatgacca aagacgccgc cagcgcccaa
     3541 cccaaatcgc gtacaccacc gaaaatcatc agagcgttga gctggggcca gccccacagg
     3601 ccgaccatca tcaagtgcac ggcgatgaac ccgatgaagg cgagcagacc aaaaaagtgc
     3661 aggctgcgcg ccccttgccg gcctccccac agccgcacgt accacgggaa gtgcgcctca
     3721 accgccggcg actgcgcagc gccggtcagg atctgaaacg gtgccaagat gaatatcacg
     3781 aaggcatagg ccagcttctg gaccgcgtcc aggggctgac ctggcagcag cgccggcagc
     3841 ttgaaactca gataggtaag aacgtcgttc cacgcatcag aaaaaatcga ccatgagtat
     3901 gggatatagc ggtgccactg gccagtcgcg aatagcagga tatagtacac aatcccggtg
     3961 agaatccagc ccatcacggt gacaaagtgc cagtgccgac ccatcccgag atgcttgtgc
     4021 ccgggcaggg acacgatgga agagtaggac tcctcctcat ccagtgtgtc gtagagcttg
     4081 tcagtaggca tggtcttgcg ggtaaacctg gcccattcgg tgccaggcct gctgtcatcg
     4141 cgccagtaaa gcttagggtg ggtgcccagg atctctatcc cactacggat gagcaaggtg
     4201 acgaacaaaa cattcaccca gtgctcgatg cgcaaccaga cgggataatc cagctgaacc
     4261 atggccgcct cctccgcgcc tcgacacctc gtcagtcatg gtttctcagt catgccactg
     4321 ccgccgctcg ggataagcga cattcatccc agtgaggacc gaaaagtgca gcattaggta
     4381 catcgccgcg agcgccatcg agaacgtgcc cagcgcgtag tcccaccgct gcaccaactg
     4441 cggcaacccc ggtagaccta ggatgcgact gacgacatac atcgcgatgg acgctgccga
     4501 taccacgctg cctaacgccc atccgatcct gaccaatcca ggccttcgcc cgaccaccat
     4561 ggcagccgaa gccagcaacg cagcgatcac gagcagcacg acgcacgccg tcaggtaaac
     4621 cggaaagtta gacacgagga aaccaccggt cagccagtac agccggattg ccccgacacc
     4681 gagcaggagc acgattcccg acgctgtcgt cacccgcggg acgttgaacg agaaataccg
     4741 ataaaaggaa atgagctttc ccgaccccgt ccaccggagc accgcagaca tcgaccaccc
     4801 cccaccgtcg cactcatcgg cgctccccga gcacaatgac tcggcttaag aaggataggg
     4861 ccaccgccac cggcacgatc agccccggca gaatcttcac acccagtgcc atcgccacca
     4921 tcctcaataa ccggctgccc gaggatgctt cacctctacc tcaaccacac tgccgccaac
     4981 aatcatcaga ccaacaccgc accatccacc gtcagctgcc accagcagct cggtgcaccc
     5041 gccgctccac cactcccgga gcgctcgccg tcggaccagt caactgaagc tcagcacccc
     5101 gcacaacaac cgagtctacc gcgcaacgtt tgctctgacg caaccaccgc ggccggatca
     5161 tgtccgggcc aggctccggg cgcgcgtgat catcgcaacg cactctaatc tcatgagcga
     5221 aagtggatct gctgcacgta cgtgcctgcg gcctcggact gccggattcg gacagcggtg
     5281 atcgagagcc actatcctgc gggtatgagt cttgacgcgg tggcgcggca tccggtcgcc
     5341 ctggtgggat ttcccgcctc cggcggacct ccgctccgag atgatccacg gtcaagccac
     5401 gagtgggtaa taggcacccg ggaatgcggg catcccgtca cgtcggccca cggcgtagca
     5461 aggcaggggc agctcaccga cgcgatggga tacccacggt ggtgcccctg cctgcggcag
     5521 ccgagacgat gcctgtccgc aatgcagcac cggtctcgac gagccgatgc atacccaacg
     5581 cggttagcag gcaggttaat ctgagctggc catactgcgt tgtaaagatg tcagcgtttg
     5641 gcggagcact cgggagacgt gcatctgtga cagaccgacc tgctcggcaa tctgcgtttg
     5701 cgtaaggcca cggaaaaacc gcagcgctaa gatcgtccgt tcccgggacg gcagctgggt
     5761 cagcaggggg cggagcacct cacggtcgtc aatcacatcg agctcggcgt cgaggccgcc
     5821 gaggaaatcg ccccgcgccg cggtactgct gtcttcggag ctgacgattt catccagcga
     5881 tgagctctgg tatgcctccc cggcttgcag cccttcgatc acctctgcgg ccgataaacc
     5941 caagtgctca gcgatctcgc tgggacgggg agcgtggcct aactgttgcg acagctcccg
     6001 ctgcgtggcc ctaatcgcca cgaccaaatc tttcaaccga cgcggtaccc gggttgacca
     6061 gccatgatcg cggaagtacc ggcgtagctc gccagtgatg gtcggtaccg cgaaggagaa
     6121 aaaatgcgca ccgtggtcgg gttcaaaccg gtccacggca ttgatcagac ccaccgtggc
     6181 gacctgaaca aggtcctcta gcggctctcc ccggccggtg aagcggcgag cgatgtgctc
     6241 ggccatcgga agatagccct tgatcagctg ctcccgtagc tcttgccgtg ctgaatcctc
     6301 cgaaacaaga gcggcatggc ggcggtgcag cgcaaccagg tgtgcgtact caccgtgctc
     6361 ggcgtcgact gacgacctag acgaagctac ggccgttgcg gggtcacgcg gtccttcacc
     6421 agagcgatgc atacccggcc atgctcgcga ggttcagcgg gcaggacaag agcgttaacc
     6481 tcatcagcga ggcaattcaa cagctcccaa ccaaccgaac cgaccggtag cggatcagcg
     6541 atgtcgtcaa tgcccacctc ggcggccagc tcaacccgcg caagccgaac cgtgaacctg
     6601 cacttcagct tcgccttcgg ggcggctacc tgtaccaaca gggcgcaagc ctcatcgact
     6661 gcaatccgca gctcgtcaac cgagtccaga tcgaaaccag cgcgcgcggc cagatcagca
     6721 gcgatcgtgc gaatggtcgg gatcgcgagg ggactggccg tggtccgaag gtcggtgacg
     6781 gcagctgagg tgacatcccc agctccacct gccatcgtca cctccctccc gtatagcggt
     6841 cagggctata gccggttcgg ctgccgggcg cacctcacgg tgattcccgt cattggtggc
     6901 tgccaaacca atggccagcg aaagacaaga atcaggctgg cggggccacc taaaagacgg
     6961 cctccgtgat atgcggcgat gggcggtggc cacaagattc tcgatactaa ccgtcgcatc
     7021 ccaattcgac aggccggtcc ttcgaagctg cgccgctcga accggcgcca ccctcaggtt
     7081 taagctgggg ccttgaccac gacggttggt ggtgtcgaag tcgcgacggc tgcggatacg
     7141 gtcgtgggca gtgggctggg gcgcctgcgg aatgactaga acactcacga gcttgggccg
     7201 ccctgggacg tagtagggct acttgaagac gtccttgata gtttcaccgg ttttcttgag
     7261 tttggctttg gcttgatcct tcttgtcctc agctttgagt tcgttgtcgc cggttggacc
     7321 cgtggtttct ttgctcttgc cctggagttc ttcgacttgt tctttgcttt gtccgcaaga
     7381 ctcatggcgt tctcgctggc ctgcacccgc caggcggcgg tgcccgctcc ggctaagaat
     7441 agtcgggccg ggacggtggc gcccgttggc cgttacgccg aacatcggcg gtgacagggt
     7501 cggagtggtt aagacggtca agtctctgtg cagcacctcg cagtttcggt gggtg
//
LOCUS       DASVXZ010000324         5327 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1092958, whole genome shotgun sequence.
ACCESSION   DASVXZ010000324 DASVXZ010000000
VERSION     DASVXZ010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5327
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1092958"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2852)
                     /gene="rpoC"
                     /locus_tag="VF788_06715"
     CDS             complement(<1..2852)
                     /gene="rpoC"
                     /locus_tag="VF788_06715"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEX8933873.1"
                     /translation="MLDVNFFDELRIGLATAEDIRQWSFGEVKKPETINYRTLKPEKD
                     GLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVT
                     HIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYAITAVNTEERHNDLPTLESEIGVQRK
                     RLEDRRDADIEARAQKLEADLAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQREIDR
                     LDEIWQTFTKLEVGQLIVDELLYREIYDRYGDYFTGAMGAEAIQKLMENFDIDAESEN
                     LRETIRSGKGQKKLRALKRLKVVAAFQITRNNPMGMVLDCVPVIPPDLRPMVQLDGGR
                     FATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVT
                     GPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALE
                     LFKPFVMKRLVDLNHAQNIKSAKRMVERQRPQVWDVLEEVITEHPVLLNRAPTLHRLG
                     IQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARVLMLSSNNIL
                     SPASGRPLAMPRLDMVTGLFHLTKLREGDTGEGRSFSSPAEAMMALDRGTIGLQAKIR
                     VRLRNVVPATGDEDRLRESQGWEPGSPWIADTTVGRVMFNDLLPDDYPFVNDVLPKKR
                     QAAIVNDLAERYPMVSVAQTLDKLKDAGFHWATRSGVTLSSSDVVVPASKQEILDQYE
                     ARADQVEKRYQRGVLSHDERNGELVKIWSQATDEVAKAMEANFPEDNPVFTIVSSGAA
                     GNMTQVRSLAGMRGLVSNPKGEYIPRPIKHNFREGLSVLEYFIATHGARKGLADTALR
                     TADSGYLTRRLVDVSQDVIVREHDCGTERGIQMPVIEPGPDGRPLRHRYVQTSVYARC
                     TAEDVLDDSGLMVMPRGSDLGDPAIDALLTAGVRRV"
     gene            complement(3023..>5327)
                     /locus_tag="VF788_06720"
     CDS             complement(3023..>5327)
                     /locus_tag="VF788_06720"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0032549 - ribonucleoside binding [Evidence
                     IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEX8933874.1"
                     /translation="EKISLDDLVNARTVSAVIQAFFGSSQLSQFMDQTNPLAGLTHKR
                     RLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGSLSSYARVNPFGF
                     IETPYRKVVDGQVTEQIDYLTADEEDRHVIAQANAVLDDDGSFAEERVLVRRKGVEVD
                     YIDPLGVDYMDVSPRQMVSVATAMIPFVEHDDANRALMGANMQRQAVPLLRSEAPLVG
                     TGMELRAAVDAGDVVVADKAGVVEELCADYVTVMADDGSRLTYRMHKFHRSNQGTCNN
                     QRPIVAEGDRVEVGQVIADGPCTDTGEMALGKNLLVAIMPWEGHNYEDAIILSQRLVQ
                     DDVLTSIHIDEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIIRIGAEVQAGDI
                     LVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVFSREDDD
                     ELSPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIIL
                     NTHGVPRRMNIGQILETHLGWIAKRGWKINGDPDWASRLPEDLQQAEPGTVVATPVFD
                     GAQEEEITGLLSSTLPNRDGQQMVGPDGKAQLFDGRTGEPYPYPVAVGYMYIIKLLHL
                     VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSD
                     DVLGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDD
                     EDLERAAANLGINLSRNESPSVDDVVQ"
BASE COUNT          875 a         1780 c         1644 g         1028 t
ORIGIN      
        1 ttgacccgcc ggacgccggc ggtcagcagc gcgtcgatcg ccgggtcacc cagatccgaa
       61 ccccgaggca tgaccatcaa accggagtca tccagcacgt cctccgccgt gcagcgggcg
      121 tagacgctgg tctggacgta acggtgccgc aagggccgcc cgtccggtcc cggctcaatc
      181 accggcatct ggatcccgcg ctcggtgccg caatcgtgct cccgcacgat gacgtcctgc
      241 gagacgtcca ccagacgcct ggtcaggtac ccggagtcag ccgtccgcaa cgccgtgtcg
      301 gctagaccct tgcgggcgcc gtgcgtggcg atgaagtact ccaggacaga cagaccttcg
      361 cggaagttgt gcttgatcgg ccgcgggatg tactcgccct tggggttgga gaccagaccg
      421 cgcatcccgg ccagcgaccg gacctgcgtc atgttcccgg ccgccccgga ggacacgatc
      481 gtgaagaccg ggttgtcctc agggaagttg gcctccatcg ccttggcgac ctcgtcggta
      541 gcctgcgacc agatcttcac cagctcgccg ttgcgctcgt cgtgcgagag cacaccacgc
      601 tggtagcgct tctccacctg atcggccctg gcctcgtatt gatcaagaat ttcctgcttg
      661 gaggccggca ccaccacatc cgagctggac agcgtcacgc cggagcgggt ggcccagtgg
      721 aaaccggcgt ccttgagctt gtccagcgtc tgagcgacgg aaaccatcgg gtagcgctcg
      781 gcgaggtcat tgacgatcgc cgcctggcgc ttcttgggca gcacgtcgtt gacgaagggg
      841 tagtcatccg gcaacaggtc gttgaacatg acccggccca cagtggtatc cgcgatccac
      901 ggcgatcccg gttcccatcc ctggctctcc cgcagccgat cctcgtcgcc ggtcgctggg
      961 accacgttcc gcaaccggac ccggatcttg gcctgcaatc cgatcgtgcc gcgatccagc
     1021 gccatcatgg cctcggccgg tgaggagaat gaacggccct ctccggtatc accttcgcgg
     1081 agcttggtga gatggaacag gccggtgacc atgtccagtc ggggcatggc cagcggccgg
     1141 cccgacgccg gggacaggat gttgttgctg gagagcatca acacccgcgc ctcggcctgg
     1201 gcctcggccg acagcggcag gtgcaccgcc atctggtcac cgtcgaagtc cgcgttgaac
     1261 gcctcgcaga ccagtgggtg cagctggatc gccttgccct cgaccagttg cggctcgaag
     1321 gcctggatgc ccagacggtg cagggtcggc gcccggttca gcagcaccgg atgttcggtg
     1381 atgacctcct cgagcacatc ccacacctgc gggcgctgcc gctccaccat ccgcttggcc
     1441 gacttgatgt tctgcgcatg gttgagatcc accaggcgct tcatcacgaa cggcttgaac
     1501 agctccagcg ccatctgctt aggcaggccg cactggtgca acttcagctg tggaccgacc
     1561 acgatgaccg aacggccgga gtagtcaacc cgcttgccga gcaggttctg ccggaaccgg
     1621 ccctgcttgc ccttgagcag gtcggacagc gacttcagcg ggcgatttcc gggtcccgtc
     1681 accggccgac cgcgccggcc gttgtcgaac agcgcgtcga cggcctcctg cagcatccgc
     1741 ttctcgttgt tgacgatgat ctccggcgca cccagatcga tgagccgctt gagccggttg
     1801 ttccggttga tcacccggcg gtacagatcg ttgagatcgg aagtcgcgaa ccggccgcca
     1861 tcgagctgca ccatgggacg cagatccggc ggaatcaccg gcacgcagtc caggaccatg
     1921 cccatcggat tgttgcgggt gatctggaaa gccgcgacaa ccttgaggcg cttgagcgcc
     1981 cggagcttct tctggccttt accgctgcgg atggtttcgc gcaggttctc cgactcggcg
     2041 tcgatgtcga agttctccat caatttctgg atcgcttcgg cacccatggc gccggtgaag
     2101 tagtcgccgt agcggtcgta gatctcccgg tagagcaact catcgacgat gagctggccg
     2161 acctccagct tggtgaatgt ctgccagatc tcgtcgagcc ggtcaatctc gcgctgagcg
     2221 cgatcccgga gctggcgcat ctcgcgctcg ccgccctctt tgaccttgcg ccgcacgtcg
     2281 ctcttggcgc cttcggcctc cagctcggcc agatcggctt ccagcttctg cgcgcgtgcc
     2341 tcgatatcgg cgtcgcgacg gtcttcgaga cgcttgcgct gaaccccgat ctcgctttcc
     2401 aaggtaggca ggtcgttgtg ccgttcctcg gtgttcaccg ctgtgatggc gtaggcagcg
     2461 aagtaaatga ttttctcaag gtctttggga gccaggtcca gcaggtagcc cagccggctc
     2521 ggaacgccct tgaagtacca gatgtgggtc accggcgcgg ccagctcgat gtggcccatc
     2581 cgctcccggc gaaccttggc gcgagtcacc tcaacgccac aacgctcaca aataatgccc
     2641 ttgaagcgga cacgcttgta cttgccgcag taacactccc agtcccgggt gggaccgaag
     2701 attttctcgc agaaaagccc gtccttctcc ggcttcagcg tgcgatagtt gatggtctcc
     2761 ggcttcttga cctcgccgaa ggaccactgg cgaatgtcct ctgcggtcgc taggccgatg
     2821 cgaagctcat cgaagaaatt gacgtcgagc acgtctggtt ccttctcccc tgtgttgtcg
     2881 aaaccctgat gccgtccgaa aacgatgttg atgaagcaga atcagggtgg ggtccgtgcg
     2941 gggtttctct ttctggtctg gtgcggccgg cacgagggtg ggcgggagga ccacccccgc
     3001 gccggccaca gtctgggagc cgttactgca cgacgtcatc taccgacggg gactcgttcc
     3061 gggacaggtt gatgccaagg ttggcggccg cccgctccag gtcctcatcg tcggagtccc
     3121 gcatctcgat tgccgctccg tcgctggaga gcacctcaac gttgagacac agcgactgca
     3181 gctctttgag taacactttg aacgattcgg gaattccggg ctcgggaata ttctcgccct
     3241 tgacgatggc ctcgtacacc ttcacccggc cgagcacatc gtcggacttg atcgtcagca
     3301 gttcctgcag ggtgtacgcc gccccgtagg cctgcatcgc ccaacattcc atctcaccga
     3361 agcgctggcc gccgaactgc gccttaccac ccagtggttg ctgtgtgatc atcgagtacg
     3421 gcccggtcga ccgagcgtgg atcttgtcat cgaccaggtg cagtagcttg atgatgtaca
     3481 tgtagccgac cgcgacaggg tagggatacg gctcaccggt gcggccgtcg aacagctgag
     3541 ccttaccgtc cggcccgacc atctgctggc cgtcccggtt gggcagagtc gagctgagca
     3601 gcccggtgat ctcctcctcc tgggcaccgt cgaagaccgg cgtggcgacc acggtgcccg
     3661 gctcggcctg ctgcaggtcc tcaggcagcc gggaagccca gtccggatca ccgttgatct
     3721 tccacccgcg cttggctatc cagccgaggt gggtctccag gatctgcccg atattcatcc
     3781 ggcggggcac accgtgggta ttcaggatga tgtccactgg cgtcccgtcc ggcaggaagg
     3841 gcatgtcctc caccggaagg atctttccga tgacgccctt gttaccgtgc cgaccggcga
     3901 gcttgtcacc gtcctggatc ttgcgcttct gcgcgacgta gacccggacc agctcattga
     3961 cgccaggtga gagctcgtca tcgtcctcgc gggagaacac ccggatgccg atgaccttgc
     4021 cggtctcgcc gtgtggcacc ttgagactgg tgtcccggac ctcccgggcc ttctcgccga
     4081 agatggcgcg cagcagtcgc tcttcggggg tcagctcggt ttcacccttg ggggtgacct
     4141 tgccgaccag gatgtcgccg gcctgcacct cggcaccgat ccggatgatg cctcgttcgt
     4201 ccagatccgc cagtacttct tcggagacgt tcgggatgtc ccgggtgatc tcctctgcgc
     4261 ctagcttggt gtcgcgggca tcgatctcgt gctcgtcaat gtggatcgag gtgagcacgt
     4321 cgtcctgcac caggcgctgg ctgaggatga tcgcgtcttc gtagttgtgg ccttcccacg
     4381 gcatgatcgc cacgagcagg ttcttgccca gcgccatctc accggtgtcg gtgcatggcc
     4441 cgtcggcgat tacctggccg acctccaccc ggtcaccctc ggccacgatg ggtcgctggt
     4501 tgttgcaggt gccctggttg gagcgatgga acttgtgcat ccggtaggtc aaccggctgc
     4561 cgtcgtcggc catcacggtg acgtagtcgg cgcacagctc ctcgaccacg ccggccttgt
     4621 cggccaccac gacatcgccc gcatcgaccg ccgcgcgcaa ctccatgccg gttcccacca
     4681 atggcgcctc gctacgcagc agcggcaccg cctggcgctg catgttggcg cccatcagag
     4741 cccggttggc gtcgtcgtgc tcgacgaacg ggatcatcgc ggtggccacc gaaaccatct
     4801 gccgggggga gacgtccatg tagtccacgc ccagcgggtc gatgtaatcc acctcgacgc
     4861 ccttgcgccg gaccaacacc cgctcctcgg cgaagctgcc gtcatcgtcg agcaccgcgt
     4921 tggcctgcgc gatgacgtgc cggtcttcct catcggcagt cagatagtcg atctgctcgg
     4981 tgacctgacc gtcgaccacc ttccggtagg gcgtctcgat gaacccgaac ggattgaccc
     5041 gcgcgtagga agacagtgac ccgatcaatc caatgttcgg accttccggg gtttcgatcg
     5101 ggcacatccg gccgtagtgg gacgagtgca cgtcccggac ctcgaacccg gcccgctcac
     5161 gggacaagcc gccgggaccc agcgcggaca gccgccgctt gtgggtcaac ccggccagcg
     5221 ggttggtctg gtccatgaac tgggacagct gggacgaacc gaagaacgcc tggatcaccg
     5281 cactgaccgt tcgggcgttg actagatcgt ccagcgagat cttctcc
//
LOCUS       DASVXZ010000325         1520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_661662, whole genome shotgun sequence.
ACCESSION   DASVXZ010000325 DASVXZ010000000
VERSION     DASVXZ010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661662"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VF788_06725"
     CDS             complement(<1..183)
                     /locus_tag="VF788_06725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933875.1"
                     /translation="MAAALALGLLTVGTLSTPAIAGASGSTLVNICSNTGTGGHKDVT
                     CNGLINGNPVTVTIGDV"
     gene            596..1135
                     /locus_tag="VF788_06730"
     CDS             596..1135
                     /locus_tag="VF788_06730"
                     /inference="COORDINATES: protein motif:HMM:NF024752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8933876.1"
                     /translation="MVVRDKVCLVDGTLVTVVNWRHRADLYSGKHRRYGMNLQVVVDL
                     HGRLLGISRPRPGSWHDSHCLAASGLAEALAGSGGWIGDAGYQGCDGISPIKKKPGTD
                     RATADQEFNTVLAKLRAPGEWANAHLKNWRILATRYRGDLGRLDNVTAAVCGLQILNE
                     QFSEHRLSFDRVHSVLISE"
     gene            1132..>1520
                     /locus_tag="VF788_06735"
     CDS             1132..>1520
                     /locus_tag="VF788_06735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933877.1"
                     /translation="MTSKHNIDATRPREIEYAWAKALAYGAAMSLETHYDDLRGNGRT
                     TEILSLIRRWEELRLSNYFSDTVRDQLKVLGKEFTLKPSTEGNWKVLPITYHENKGGN
                     DWTFHNPYATQHAFISIDTGPSAAPII"
BASE COUNT          318 a          439 c          472 g          291 t
ORIGIN      
        1 gacgtcgccg atcgtcacgg taacggggtt gccgttgatc aatccattac acgtaacgtc
       61 cttgtgcccg ccagttccgg tgttggagca gatattgacc agggtagaac cgctggcgcc
      121 agcgatcgcg ggggtgctga gcgtccccac cgtgagcaga ccgagcgcca atgcggcagc
      181 catgagataa ccaatgaagc cattcgaaat tgacctgaaa agcacttgat gccgctcggc
      241 gcgcctcctt tgaggtgggg tccttcttgg tgatgctgga tctgccaaga tctcagtaac
      301 caagaagggc gagtatcagt gtatcgactg ccgggtttga gtaacagggc aaccagcgtc
      361 gtggtgaaga tggctgagga tgcttttcct gattggcatc gtccgcgcgg gcggcataag
      421 gcagtggatc tggtcggtgc gctgcggtta gccataaccc ctctgcgccg caacagcacc
      481 tacgaggagt tgggtgagga caacgccatg gcggcctcga ccgcctggtc gcacgtgcag
      541 accatgactg ctttcctggc cgacggccct cggcgtggac gcagcctggt gggccgtggt
      601 ggtccgggac aaggtctgtc tggtcgatgg caccctggtg accgtggtca actggcgtca
      661 ccgcgctgac ctgtactcgg gcaagcatcg ccgctatggc atgaacctgc aggtggtcgt
      721 tgatctgcac ggccggctcc tcgggatcag ccggccgcgg cccggcagct ggcatgactc
      781 gcactgtctg gccgcgtccg gtctggccga ggcgctggcc ggttcgggag gctggatcgg
      841 tgacgccggc taccagggct gtgacggcat cagcccgatc aagaagaaac ccggtaccga
      901 ccgcgccaca gcagaccagg aattcaacac cgtcctggcg aagctccgcg ccccgggaga
      961 atgggccaac gcccacctaa aaaactggag aattctggca actcgctacc gcggagacct
     1021 gggcaggctt gacaacgtta ccgcggcggt gtgcggtctg cagatcctga acgaacagtt
     1081 cagcgaacac cggctctcct tcgaccgagt ccactcggtt ctcatttccg aatgacttca
     1141 aagcataaca tcgacgcgac acgtccgcgt gaaatcgagt atgcatgggc caaggccttg
     1201 gcttacggcg cggccatgtc gttggagact cactacgatg acctgagggg aaacggtcgc
     1261 acgaccgaga tcttgtccct tatccgccga tgggaagagc tgcggctcag taattacttc
     1321 tcggacaccg tccgggatca attgaaggtg ttaggcaaag agtttaccct caagccgagc
     1381 accgagggga actggaaggt gctgccgata acgtatcacg aaaataaggg tggcaatgac
     1441 tggacattcc ataatccgta tgctacgcag cacgccttta ttagcatcga tacaggacca
     1501 tcggcggcgc caattattaa
//
LOCUS       DASVXZ010000326         1534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_214359, whole genome shotgun sequence.
ACCESSION   DASVXZ010000326 DASVXZ010000000
VERSION     DASVXZ010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214359"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..835
                     /locus_tag="VF788_06740"
                     /pseudo
     CDS             125..835
                     /locus_tag="VF788_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(873..1379)
                     /locus_tag="VF788_06745"
     CDS             complement(873..1379)
                     /locus_tag="VF788_06745"
                     /inference="COORDINATES: protein motif:HMM:NF020419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="HEX8933878.1"
                     /translation="MARTPSCGVLKGATAILARLAGDARHTRDIDLYRQDEDLPTAEN
                     SLRTAAATNAGDFFRFTLDPGQRITQEKHTLRVSVTAYLGLREFARFHVDLVTDLIMT
                     APPEEVTPLVPISIAGITTTTYRAYPITDHIADKVCAMIEIHHRSDGQPQSSSRYHDL
                     ADLAALLR"
BASE COUNT          274 a          458 c          512 g          290 t
ORIGIN      
        1 agcccagaaa tggacctatc cccaccaccc cgggcgtcca cctgtcgaga cgctgtggtc
       61 tcgttgatcg agcgcatggg gcactgttgc gtccaccgat gggaggctcg ggcaggctgt
      121 gttgatgtgt cgtagccgtt cccggccgcc agcgccaagg tcaagcttta gcggatttca
      181 attcccgccg gaggtgatca cggtcgctgt gcgctggtac ttgcgctatg ggctctccta
      241 ccgcgacgtc gaagagctgc tggccgaacg gggcatcgag gtcgaccatg tgagcatcta
      301 ccgctgggtg cagcggttca ctccgtcgtt gatcgacgcg gcacgaccct gccgacacgt
      361 tcccggtgat cggtggtgtg tcgacgaaac gtaggtgaaa gtcgccgggc gctgggtcta
      421 cttgtaccgg gcgatcgacc aatatggcca ggtcatcgac gtactggtgt cggaaaagcg
      481 ggacttggcg gccacccgcc gattcttcac ccaggctctc gatcacggca cccaccccaa
      541 cgcggtgacc acggacaaag caccgaccta tcctcgggtg ctcgacgagc tagtacccgc
      601 tgcctaccat ctcaccgagc agcacggcaa taacctcatc gaagcagatc atggacgact
      661 caaggcccga ctgcggccga tgcgcggcct cgaacagctt cgctccaccc gagtgatcag
      721 caccggacac gccttcatcc aaaacgtgcg ccgcggccac tacgaactcg gctcggatgc
      781 cgacccgaag cgacaactcc cggcggcctt cgccgaactc gccctcgcca tctaattgtg
      841 gcgcgatagc ggctcatctc acccattttc cgtcaacgca acagggccgc caggtcggct
      901 aggtcgtggt agcggctgct ggactggggt tgcccgtcag aacgatggtg aatttcgatc
      961 atcgcgcaca ctttgtcggc gatgtggtcc gtgatcgggt aggcgcggta ggtggtggtg
     1021 gtgattccgg cgatggagat cggcaccagg ggtgtgactt cctcgggtgg tgcagtcatg
     1081 atgagatcgg tgacgaggtc gacgtggaag cgagcgaatt ctcgcaggcc caggtaggcg
     1141 gtgacggata cccgcagcgt gtgtttttcc tgggtaatgc gctggccagg gtcgagggtg
     1201 aagcggaaga agtctcctgc attggtggcg gcggccgtgc gcagcgaatt ttcggcagtg
     1261 ggcaggtctt catcttgccg atagaggtcg atgtcgcggg tgtgccgggc gtcgccggcg
     1321 agccgagcca ggatagccgt agcacctttg aggaccccac agcttggcgt ccgggccagt
     1381 gaagatacga gtcaggagcc ggtcgtaggc aaattgccgg cgcaacgagt caagcgtcac
     1441 gcctggccgg ccatgggcgt gggcgcgtag caagtcggtg agtgcccggt tcatcgcctg
     1501 cggattcgca taggggcgat gcgctgtggg gctc
//
LOCUS       DASVXZ010000327         3637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1737048, whole genome shotgun sequence.
ACCESSION   DASVXZ010000327 DASVXZ010000000
VERSION     DASVXZ010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1737048"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..677
                     /locus_tag="VF788_06750"
     CDS             <1..677
                     /locus_tag="VF788_06750"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HEX8933879.1"
                     /translation="GVVLLTASTPAIAGCGTRVSPTSAENSYTVTEPVTSLKIDNPVG
                     NTQIEGTDANAISVTEQLHYTGNPPQTSYPITGSQLVLSYTCPGVFDVNSCSVTYVVK
                     VPRRLAVEIDDNVGSTTLTGLAGQLTLTSSTGNVNATGLTSATVTARANAGTINLGFT
                     APPTTVDAQAQVGSITIRLPAGTAYAVDTGSQVGVADVKVKQDPGAPHRITAHSQVGS
                     VSIYNG"
     gene            847..1512
                     /locus_tag="VF788_06755"
     CDS             847..1512
                     /locus_tag="VF788_06755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933880.1"
                     /translation="MGERLRAVLAMVCIRGFGDYDRGACARNSHLDPDGDPGCAIRCT
                     DDSVDQPACLTIELSPGPPVGKPVPDPTVEAIAGFPAEPTRFVGRAEAMAAAGTALAP
                     ACGRSAVVFHGMAGAGKTTCAVELAYRHQRGFGRVAFWSAPTEPDQCGDALRLLAMEL
                     EAQLGDHGVAMVEEIVTLERLEKFLPTSPPSSATRACCWSWTISKPCSPRMASGVIVD
                     GRS"
     gene            1434..3350
                     /locus_tag="VF788_06760"
     CDS             1434..3350
                     /locus_tag="VF788_06760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933881.1"
                     /translation="MLLVLDNLETLLTPDGQWRDRRWALLISALTGHQGPSRVILTCR
                     IVPSGLNPDTVLIWPVQALSRDESLSLIGQLPNLRALLHSVALGRCVLTLTQGHPTLL
                     ELADAAAADPPRLAYQLAEIEAAVDGAAPLIAFLTDGRTRLDAEQLSQTFTTWVLNVA
                     ATLPTRARLLLQALCRIEETDRNTTVVGANWAALWRRWEQPGEPPPLASPLAALVGAA
                     LIATDPIGDPADPYGPVRYRIHPGIARVIHGVTPESVTAAVDAQLAAWRTAVVGGWGI
                     EQPPSGKDASQFMVRASLAAARYLLRQRDWNVASCLLERALIREDYSPATSLAVTALL
                     AHRRGHRRAQRPRRARRRSPEGGCWRGRNPAAPRLPPSHDRRPKYQLASTTAGELVTL
                     LRDQGRLREALTLAGQKIEHTGHAGFGFWTQLSDKGRRLQILNLLGDHEQVLNDLPVL
                     RAHMADLSDQRARNDRVNPRNVREGVLDIGRMSAVALERWDDALDLNDEITSTKRRSG
                     ATPYEIACTRFNNYLPLLHLGRLTDADQLLRECHDAFDTAADITQLAVVHGARADLKD
                     KRNHPVDAVELQRTSLQLWYVHPDPREIAIAHHNLANYLARAAGIPAEQRAHRLTAAF
                     LNLACLPDFGWRTQ"
     gene            3378..>3637
                     /locus_tag="VF788_06765"
     CDS             3378..>3637
                     /locus_tag="VF788_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8933882.1"
                     /translation="MREKRRKYSPEYKSEAVRLVIETSRPITEVAREIGVHEGTLGAW
                     VNKYRTEHAGDEPPLTMSERARLRELEREVRELRMKTEFLGKA"
BASE COUNT          667 a         1279 c         1105 g          586 t
ORIGIN      
        1 taggagtcgt cctgctgacg gcttcaacgc cggccatcgc cggctgcggt acccgagtca
       61 gccctaccag tgcggaaaac tcctatacgg tcaccgagcc ggtcacgtct ctcaagatcg
      121 acaatccggt gggaaacacc cagatcgagg gcaccgacgc gaatgcgatc tcggtcaccg
      181 aacagctcca ctacaccggc aacccgccac agaccagcta cccgatcacc ggcagccagc
      241 tcgtcctgag ctacacctgc ccgggtgtct tcgacgtcaa ctcgtgcagc gtgacctacg
      301 tggtcaaggt accccgacga ctcgcggtag agatcgacga caatgtcggc agcaccacgc
      361 tgaccgggct ggccggccag ctgaccctca cctccagcac cggaaacgtc aacgctaccg
      421 ggctcaccag cgcaacagtg actgctcgtg ccaatgccgg cacgatcaac ctgggattca
      481 ccgcgccacc gacgaccgtg gacgcgcagg cccaggtcgg ctcgatcaca atacggctac
      541 ctgcaggtac cgcctacgcc gtcgacaccg gcagtcaggt cggcgttgcc gacgtgaagg
      601 ttaagcagga tcccggcgcc cctcaccgca tcaccgccca ctcgcaggtg ggctcggtga
      661 gcatttacaa cggctgacca ccacccaaat gcagccgagt cgatctcgac gaccaagtct
      721 gcgcatcgaa cgataagtct gcagaccatt accatcacga ccatatctag ccatacgagt
      781 ggcttttgtc atggcgagtc gtccgctcgt ttctgtgtga ggctcaacct cgagatagca
      841 gttctgatgg gtgagcgtct cagggcggtg ctcgcgatgg tgtgtatccg aggcttcggt
      901 gactacgacc gcggtgcttg cgctcggaat tctcatctgg atcctgatgg cgatcccggt
      961 tgcgctattc gttgcacgga tgactcggtt gaccagcccg cgtgccttac gatcgaactg
     1021 tccccgggcc ctccggttgg gaaaccggtc cctgacccca cggtcgaggc gatagctggg
     1081 ttcccggccg agccgacgcg ctttgtcggc cgtgccgagg cgatggctgc ggccggtacc
     1141 gcactggccc cggcctgcgg gcgcagcgcg gtggtgtttc atgggatggc cggtgcgggc
     1201 aagaccacct gcgcggtgga gctggcctac cgccaccagc gtgggttcgg cagggtggcg
     1261 ttttggtccg cgcccaccga gccggatcag tgcggtgatg cgctgcgcct gctggcgatg
     1321 gagttggagg cgcagctggg tgatcatggg gtcgcgatgg tcgaggagat tgtcaccctg
     1381 gagcgtctgg agaaattcct gcccacctca ccgccgtcct cggcgacacg ggcttgctgc
     1441 tggtcctgga caatctcgaa accctgctca ccccggatgg ccagtggcgt gatcgtcgat
     1501 gggcgctcct gatcagcgcg ctcaccggcc atcaggggcc ctcgcgagtg atcctgacct
     1561 gccgaatcgt gccgtctggg ctgaacccgg acacggtgct gatctggccg gtgcaggcgc
     1621 tgtcccggga cgagtcccta tcgctgatcg ggcagctgcc caacctgcgc gcgttgctgc
     1681 acagtgtcgc gctgggccgc tgtgtgctca ccctgaccca ggggcatccc acactgctcg
     1741 agctcgccga cgcggccgca gccgacccac cccggctcgc ctaccagctg gctgaaatcg
     1801 aagcagcggt ggacggggcg gcgccgctga tagcgttcct gaccgatggc cgcaccaggc
     1861 tggacgccga gcagctatca cagaccttca ccacgtgggt cctcaacgtc gcagcaacgc
     1921 tgcccacccg ggcgcggctg ctgttgcaag cactgtgccg aatcgaggaa accgaccgga
     1981 acacgaccgt cgtcggcgcg aactgggctg ccctgtggcg gcgctgggag cagcccggtg
     2041 aaccgccacc actggcctcg ccactcgctg cgctggtagg cgccgcactg atcgccaccg
     2101 acccgatcgg tgatcccgcc gatccgtacg ggcccgtgcg ctaccggatc caccccggca
     2161 tcgcccgggt catccacgga gtgaccccgg agtcggtcac agccgcggtc gacgcgcaac
     2221 tcgccgcgtg gcggaccgcc gtcgtcggcg gctggggaat cgagcagccc ccatccggta
     2281 aggacgctag tcaattcatg gtgcgagcca gcctggccgc cgcccgctac ctcctgcgtc
     2341 aacgcgactg gaacgtcgcc agttgcctgc tcgaacgcgc gctgatccgg gaggactact
     2401 ccccggccac ctcgcttgct gtcactgcct tgctggcgca tcgccgaggc caccggcgcg
     2461 ctcaaagacc tcgtcgtgct cgccgccgct ctccggaagg tggatgctgg agaggccgaa
     2521 accctgctgc gccgcgctta ccaccaagcc acgaccgacg gccaaaatac cagctggcct
     2581 ccaccaccgc cggtgaactg gtcaccctgc tacgtgacca gggcaggctc cgcgaggcgc
     2641 tgaccctggc cggccagaaa atcgagcaca ccggccacgc cgggttcggc ttctggaccc
     2701 aactaagcga caaaggccgg cggctgcaga tactcaatct gctcggcgac catgagcagg
     2761 tcctcaacga cttgccggta ttgcgggccc acatggccga cctgtccgac cagcgcgccc
     2821 gtaacgaccg cgtgaacccg agaaacgtcc gggagggcgt tctcgatatc ggccgcatgt
     2881 ccgcagtggc cttggaacgc tgggacgacg cgcttgacct caacgacgag atcaccagca
     2941 ccaagcgacg gagcggcgcc accccctacg agatcgcctg cacccggttc aacaactacc
     3001 tacccctgct tcacctcggt cggctcacag acgctgacca actcctccgt gaatgccacg
     3061 acgccttcga caccgccgcg gacatcaccc agctcgccgt ggtccatggc gcccgcgccg
     3121 acctgaaaga caaacgcaac cacccggtag acgccgttga actccagcgc acctcgctcc
     3181 aactctggta cgtacacccc gatccccgcg agatcgccat agcgcaccac aacctcgcca
     3241 actacctggc ccgcgccgcc gggatccccg ccgagcaacg cgcccaccgc ctcaccgccg
     3301 cgttcctcaa cctggcgtgc ctcccagatt tcggatggcg gacccaataa ggtcccgtcc
     3361 ggaatggagg atgatacatg cgggagaagc gccggaaata tagtccggag tacaaatctg
     3421 aagcagtacg gttggtgatc gaaacatctc gtcctatcac cgaggtcgct cgtgaaatcg
     3481 gggtgcatga ggggaccctc ggcgcttggg taaacaagta ccgaaccgag catgccggcg
     3541 acgaaccacc cttgactatg tcggagcgag cccgcctccg ggaacttgag cgtgaggtcc
     3601 gggagttgcg gatgaaaacc gagttcctgg gaaaggc
//
LOCUS       DASVXZ010000328         2293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1003111, whole genome shotgun sequence.
ACCESSION   DASVXZ010000328 DASVXZ010000000
VERSION     DASVXZ010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003111"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..262)
                     /locus_tag="VF788_06770"
     tRNA            complement(179..262)
                     /locus_tag="VF788_06770"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(225..227),aa:Tyr,seq:gta)
     gene            713..1777
                     /locus_tag="VF788_06775"
     CDS             713..1777
                     /locus_tag="VF788_06775"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933883.1"
                     /translation="MGSLSSPVLLVLFVASAGVIWIAGVKLSDNTDVLAERLHLGSAL
                     GGLILLAIATNLPEIAITGSAALAGQLDVAVGNILGGIAIQTVVLVALDGAGVRPRAP
                     LTRLAASLVLVLEGALVVVVLAVVVMGTQLSPSLGFARLAPASVVIAALWVAGLVLLN
                     RAGKGLPWREGGDAPDSQPEPRGHSRGKKEQAASDQGISTSRAALVFGVAAIATLVAG
                     VVIERSGEEFFRRLGLSGIIFGATVLAAATSLPELSTGLTSTRLGDYKLAISDIFGGN
                     AFLPVLFLLASLLSGKPVLPTAHNTDIYLTALGIVLTIVYMAGLIFRPRRQYLRMGID
                     SITVLIIYLVGIVGLATIGS"
     gene            1779..>2293
                     /locus_tag="VF788_06780"
     CDS             1779..>2293
                     /locus_tag="VF788_06780"
                     /inference="COORDINATES: protein motif:HMM:NF016154.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
                     /protein_id="HEX8933884.1"
                     /translation="MSWLVGNGAVLLHTVVKSVLLFVTAVVGFRLGERRTLAELAAFD
                     FVAVISVGAIIGRTATAADSAFLTGAIALATILLTHRLITRLRYRPKIARLVDQQLRL
                     LVVDGELRHDELRKTGLTEADVLAVLRQRGVHRLADVRYLVYEAKGAFSVVGPEAPAD
                     GEPLATALRTAR"
BASE COUNT          350 a          734 c          771 g          438 t
ORIGIN      
        1 gtcctggtgc caagatcaca gcaaaccctc gacctgacca gctgccgcct gggtcagcac
       61 tacggcgcga atagggcgcg aacagcagta gatacccgga tacgaccgga cagcgccgga
      121 tatgacaaag atcgaccccc gacctgatcg gtgctggtcg tgggccgttc ctgctgcgtg
      181 gcgggtcaag gattcgaacc ttggaaggca tcagccgacg gatttacagt ccgctttatt
      241 tggtgggttg accagtgata atgcgtctcc gggcgggaat agggcgggcg cttcatgtga
      301 gcccgagggc ccggctgatt tggtcgcgcg ccgtgagccc ttgtccggtg atgcacttgg
      361 cgtagacccg cagcagtccg tatgcgttcg tctacgttca ttagtgttcg gattctcgtg
      421 gcgatgcagg tgacggacgt gcacggtatt tggcgaacta tcatccagac ttctggccgg
      481 tgtcaccgcg cgaggctcag ccggagccta caagttcctg ctgggtgtgc atcgggtctg
      541 ctggtgcggg acaggaagtg ccaataatca gcggttgggt ctcctaggac ccaaatcgtc
      601 cacgccgggc cagatcgagg tgttctccac caccgaggcc gataactgcg acggctcggg
      661 ctcgctgtcg gtgcggcgag tgactcgcgc gatcctgggg tagttccggg ccatgggatc
      721 attgagctcg ccggtgctgc tggtgctgtt cgtcgcgagc gctggagtca tctggattgc
      781 cggtgtcaag ctgtcggaca acaccgacgt gctcgccgag cggctgcatc taggcagcgc
      841 cctgggtggg ctgatcctgc tggcgatcgc caccaacctg ccggagatcg cgatcacggg
      901 cagcgccgcg ttggctggcc agcttgatgt cgcggtcggc aacattctcg gcgggatcgc
      961 gatccagacg gtggtgttgg tcgcgctgga cggcgctggg gtacggcccc gggcgccgct
     1021 gacccggctg gcggccagcc tggtgttggt gttggagggc gccctggtgg tcgtcgtgct
     1081 ggcggtggtc gtgatgggca cccagctatc gcccagtctg ggctttgccc ggctcgcccc
     1141 ggcatcggtg gtcatcgccg cgctgtgggt cgccgggctg gtattgctca atcgtgctgg
     1201 caagggtctg ccctggcggg aaggcggcga cgctccggat agccaacctg aaccccgcgg
     1261 gcactctcgc ggcaagaagg aacaggcggc cagcgaccag ggcataagca catcccgcgc
     1321 cgctctggtc ttcggtgtcg cggcgatcgc gacgctggtc gcgggagtag tcatcgaacg
     1381 cagcggcgag gagttcttca gacgacttgg gctcagcggg atcatcttcg gtgccaccgt
     1441 gctcgccgcc gccacctcgc tgcccgagtt gagcaccggg ctgacctcca cccggctcgg
     1501 tgactacaag ctggcgatca gcgacatctt cggcggcaac gcgttcctgc cggtgctgtt
     1561 cctgctagcc agcctgctgt ccggtaagcc ggtgctgccc accgcgcaca acaccgacat
     1621 ctacctcact gccttgggca ttgtcctgac aatcgtgtac atggccgggc tgatcttccg
     1681 ccctcgccgc cagtacctgc ggatgggcat cgacagcatc accgtgctga tcatttacct
     1741 ggtcggcatt gtgggcctgg ccacgatcgg aagctagcgt gtcgtggcta gtcggtaacg
     1801 gcgcggtgct gctgcacacc gtggttaagt cggtgctgct gtttgtcacc gcggtcgtcg
     1861 gctttcgcct cggggagcgg cgcaccctcg ctgagctcgc cgcgttcgac ttcgtggcgg
     1921 tcatcagtgt cggggcgatc atcggtcgga ccgccaccgc ggccgactcg gcattcctca
     1981 ccggagcgat cgcactggcg acgatcctgc tgacccaccg cctgattact cggctgcgct
     2041 accgcccgaa aatcgcgcgg ctggttgacc aacagctgcg gctgctggtg gtcgacggcg
     2101 agctacgcca cgacgaacta cgcaagaccg gcctcaccga ggccgacgtg ctcgccgtac
     2161 tccgccagcg cggcgtgcac cggctagccg acgtccgcta cctcgtctat gaggccaaag
     2221 gcgccttctc ggtggtcgga cccgaagcgc cagccgacgg cgagccactc gccaccgcac
     2281 tgcggaccgc ccg
//
LOCUS       DASVXZ010000329         2102 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1200180, whole genome shotgun sequence.
ACCESSION   DASVXZ010000329 DASVXZ010000000
VERSION     DASVXZ010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1200180"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..711
                     /locus_tag="VF788_06785"
     CDS             <1..711
                     /locus_tag="VF788_06785"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEX8933885.1"
                     /translation="QRPVIVCAQAGEVNTGAFDPFPQIVAWARDRDAWVHVDGAFGLW
                     ALADPTRQHLVDGLTEADSWATDAHKWLNVTYDSGIVLLRNAEHLRHSFASVAGYLPP
                     QDGFEAMHHTPQSSQRARQIEVWAVLRCLGRAGIANLVATTCRQARRISDALAEAGLE
                     ILNDVVLNQVLISTGCDDTTKRLIAAIQTDGTCWCGPTTWNGRVAMRISVCGWNTTDE
                     DADRSIEAILHQRDLTLA"
     gene            complement(873..1250)
                     /locus_tag="VF788_06790"
     CDS             complement(873..1250)
                     /locus_tag="VF788_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3054 domain-containing protein"
                     /protein_id="HEX8933886.1"
                     /translation="MSTQTVHPTTVTLAAGADVLGVLVFAAVGRSSHAEVPDAVGVLT
                     TAAPFLFGLLLSWLVVRVWRAPLRLPVGVAVWAGVVIVGLGVRASFTHRLPLTFVLIA
                     AASLAVLLLGWRAVAHFIARKAP"
     gene            complement(1301..1774)
                     /locus_tag="VF788_06795"
     CDS             complement(1301..1774)
                     /locus_tag="VF788_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF664 domain-containing protein"
                     /protein_id="HEX8933887.1"
                     /translation="MISVDDFLYYVDDALDGMVRIVSELGDTLANRRPDIPNANSPFA
                     ILFHCLGVMEYWGGEIVAGRSIIRDRPAEFRAIGRVTELTDATERGRQQLRADVAALD
                     PWGSPRGVPHAEYSTLPMARTQGGALLHIYEELAQHRGQMEITRDLLWAPWAQFG"
     gene            complement(1921..>2102)
                     /locus_tag="VF788_06800"
     CDS             complement(1921..>2102)
                     /locus_tag="VF788_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8933888.1"
                     /translation="VVFGTADTIVPPAQSAAVAAAAGGPARAVPVVGADHNDTALVEG
                     NVLIAAVLELARSLA"
BASE COUNT          383 a          708 c          686 g          325 t
ORIGIN      
        1 cagcgaccgg tcatcgtctg cgcacaggca ggggaggtca acaccggggc gttcgatccg
       61 ttcccacaga tcgtggcctg ggcgcgggac cgtgatgcgt gggtgcacgt cgacggtgct
      121 ttcggtctgt gggcgttggc cgaccccacc cgccaacacc tggtggacgg cctgaccgag
      181 gccgactcat gggccaccga cgcgcacaag tggctcaatg tcacctatga cagcgggatc
      241 gtcctgctcc gcaacgctga gcacctccgc cacagtttcg cctccgtggc cggctatctc
      301 ccgccgcaag acggttttga ggcgatgcac cacacacccc agtcctcgca gcgcgcccgc
      361 cagatcgagg tatgggcagt actgcgctgc ctcggccgcg ccggaatcgc gaatctggtg
      421 gccaccacat gccggcaggc ccgccgcatc agcgacgcgc tggccgaggc cgggttggaa
      481 attctcaacg acgtagtgct caaccaagtc ctgatcagca ccggctgcga tgacaccacc
      541 aaacgcctga tcgccgccat ccagacggac ggcacctgct ggtgcgggcc caccacctgg
      601 aacggtcgag tggcaatgcg aatcagcgtc tgcggatgga acaccaccga cgaggacgcc
      661 gaccgcagca tcgaagcgat actgcaccag cgtgacctca cactggcctg aggtgatggc
      721 taccgtacgg acaatcggtt actctgcgta gtgaacggag agcgcgtcca tactgactag
      781 tgaatcgtcg gaatatctgc aacatcgccg taggccgctg cgatgacatg agtagagccc
      841 cgtgatgctg ttggaccccc gacccggcag cgtcacgggg cttttcgcgc gatgaagtgc
      901 gctacagccc gccagccgag gaggagcacc gccaggctcg cggcggcgat cagtacgaac
      961 gtcagtggca atcggtgggt gaacgacgcg cgcacgccga gaccaacgat cacgacgcca
     1021 gcccacaccg ccactccgac cggcagccgt aacggcgcgc gccacacccg gacgaccagc
     1081 cagctgagga ggagcccgaa caggaatggc gccgcagtag tcaacacccc gaccgcatcc
     1141 ggcacctcgg catgcgagct gcgccccacg gcggcgaaca ccaacacccc aagcacatcg
     1201 gctccagccg cgagggtgac ggtcgtcggg tggacggtct gtgtgctcac atcagcagcc
     1261 tatgctggct ggcccctgcc ctggtcagga caaatcggcg tcagccgaac tgcgcccatg
     1321 gtgcccagag caggtctcgc gtgatctcca tctggccgcg gtgctgggcg agctcctcgt
     1381 agatgtgcag cagtgcaccg ccctgagtgc gggccatcgg cagcgtggag tactcggcgt
     1441 gcggcacccc gcggggtgat ccccagggat cgagtgctgc tacgtcggcg cgcaactgtt
     1501 gccggcctcg ctccgttgca tcggtgagtt cggtaacgcg gccgatggcc cggaattcgg
     1561 cgggccggtc gcggatgatg ctgcggccgg cgacgatctc gccgccccag tactccatga
     1621 cgccgagaca gtgaaagagg atcgcgaacg gtgagtttgc gtttggtatg tcgggccggc
     1681 gattggcgag ggtgtcgccg agttcgctga cgatgcgcac catgccatcg agcgcatcgt
     1741 ccacgtagta cagaaagtca tcaactgaga tcatctgcca gcctcgcaac cggatcgatg
     1801 tcgagagatg cgagaccact ctcgtggtcg ggcccctcct ccaaacgatc tgatcctggc
     1861 tgtgttggat cgtgcagcgg atatcggggg gtcgcccggt ggtcgctgtc gcgcaacgct
     1921 tcaagcgagt gaccgggcga gctcgagcac ggcagcgatc aggacgttcc cctccaccag
     1981 ggcggtgtcg ttgtggtctg ccccgaccac cgggaccgcc cgggccgggc cgcccgcggc
     2041 ggccgctacc gccgcactct gcgcgggcgg cacaatcgtg tcggcggtgc cgaagacgac
     2101 ca
//
LOCUS       DASVXZ010000330         5230 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1737626, whole genome shotgun sequence.
ACCESSION   DASVXZ010000330 DASVXZ010000000
VERSION     DASVXZ010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5230
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1737626"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..703)
                     /locus_tag="VF788_06805"
     CDS             complement(<1..703)
                     /locus_tag="VF788_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8933889.1"
                     /translation="MTGFATRAIHAGQDPDPHTGSVIVPIHATSTFVQDGVGGLREGY
                     EYARTGNPTRTALEICLAALERGRYGRAFASGMAASDVLIRATCRPGDHIVIPDDAYG
                     GTFRLIDKVFRHWGIEHTAVPQSDLDAVRTAMRPTTRLVWCETPTNPLLTIADIAALA
                     GIAHEAGARLVVDNTFATPYLQTPLGLGADVVLHSTTKYLGGHSDVVGGALVVRDEEL
                     HRQVRFVQMSVGAVPG"
     gene            complement(700..1152)
                     /locus_tag="VF788_06810"
     CDS             complement(700..1152)
                     /locus_tag="VF788_06810"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEX8933890.1"
                     /translation="MPGPPLADFGARVVSFSIDFVIPAIVLNLLLAIGSMTVTPEWSQ
                     ILAVVGYLGLLGFGLWNSGYLQGTTGRSLGRRVANSRLVMMQTGQPVGFGRAVVRQIC
                     HLLEFGIGYLWPLWDVKHQTFADKIVGTVVVRAGGSAGSPVDRRRVGE"
     gene            complement(1643..3013)
                     /locus_tag="VF788_06815"
     CDS             complement(1643..3013)
                     /locus_tag="VF788_06815"
                     /EC_number="4.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004122 - cystathionine beta-synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019344 - cysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-synthase"
                     /protein_id="HEX8933891.1"
                     /translation="MHYAEHIIDLVGNTPLVRLNAVAQNVAPLVLAKVEYLNPGGSVK
                     DRIALRMVEAAERSGQLQPGGTIVEPTSGNTGIGLALVAQRKGYRCLFVCPDKVGEDK
                     RDVLKAYGAEVLVCPTAVPADHPDSYYSVSDRVATEIDGAWKPDQYSNPENSTSHYHS
                     TGPELWAQTEGRITHFVAGIGTGGTISGTGRYLKEVSDGRVQVVGIDPEGSVYSGGSG
                     RPYLVEGVGEDFWPRTFDRTICDEVIPISDADSFTMTRRLAREEGLLLGGSCGMAVVG
                     ALQLAERAAPESVIVVLLPDGGRGYLGKVFNDAWMASHGFLPPDSSGATVSDVLVGKD
                     GAIPKLVHTHPNETVAEVVMILREFGVSQLPVVAAEPPVMAAEVIGAVNERTLLQDLF
                     AGDAQLADRIEAHMAAPLPTIGGGESIGSLMRALAEADGAMVLIDGKPAGVVTRQDVL
                     GFLAGR"
     gene            3133..4014
                     /locus_tag="VF788_06820"
     CDS             3133..4014
                     /locus_tag="VF788_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEX8933892.1"
                     /translation="MQRLLRTTAVMVGATGATVGAAYGVLTQQGRRARRNIVIPGWCP
                     FRADGVYLPDGTGPHPPSAVALPAPALDVVHLAMLGDSLAAGLGVDGPEHLPGAVLAR
                     GLAKDADRPVQLDTLASCGCTSRRLSGQVDLALSDPPRVAVIMIGANDVTRRVPPWES
                     AKLLGEAVSRLRAIGTTVIVGTCPDLGTIRPIPQPLRALAHTSSLTLARLQRDAVYRA
                     GGLVVPLAQLLAHDFLTQPETMFSQDHYHPSSAGYDAACTVLLPALCSALRASALPDE
                     GGNTETDPATPAGRPGP"
     gene            complement(4030..4851)
                     /locus_tag="VF788_06825"
     CDS             complement(4030..4851)
                     /locus_tag="VF788_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEX8933893.1"
                     /translation="MRSTSNPAFRNLPVGGGGYAGFNSAPARFPGSGYSESDTQSRYG
                     GALPTTSRPMTVDDVVTKTSITLAVLIATGAATYFSGLWGLALPAALIGFVLALVVIF
                     KKVVSPPLILAYAAVEGVFLGGISGAMSSTVARYTGSSSLVLEAITGTVLVFAGMLVV
                     YKTGAVKVTPRFTKWITGALIGAVGLMLVNLIASFFLPGGLGLRSGGPLAIVFSLVVI
                     GIAAFSLLLDFDAADEAIRAGAPEKTAWYIAFGLTVTLVWLYLEILRLLSYFQSE"
     gene            5037..5189
                     /locus_tag="VF788_06830"
     CDS             5037..5189
                     /locus_tag="VF788_06830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933894.1"
                     /translation="MDWWGWVIVAVVVVLLLITLAVLVQRKRRRGGVIGLGRSGSGDS
                     SRRKRR"
BASE COUNT          902 a         1747 c         1736 g          845 t
ORIGIN      
        1 ggccgggcac ggcgccgacc gacatctgca cgaagcggac ctggcggtgc agctcctcgt
       61 cgcggacgac cagcgccccg ccgacgacgt cggagtgccc accgaggtac ttcgtggtcg
      121 agtgcagcac cacgtccgca ccgagtccga gcggagtttg caggtagggc gtggcgaagg
      181 tgttgtccac caccagccgg gcaccggcct cgtgcgcgat accggccaac gccgcgatat
      241 cggcgatcgt gagcagcggg ttcgttggcg tctcgcacca caccagccgg gtcgtcggac
      301 gcatcgcggt acggacggcg tcgagatcgg actgcggcac ggcggtgtgc tcgattcccc
      361 agtgccggaa gaccttgtcg atcaggcgga acgtaccgcc gtaagcgtcg tcggggatga
      421 cgatgtgatc cccgggtcgg caggtcgccc ggatcagcac atcactggcc gccatcccgg
      481 acgcgaaggc gcgcccgtac cggcctctct ccagcgcggc caggcagatc tccaacgccg
      541 tgcgggtggg gttgccggtg cgcgcgtact cgtacccctc acgcaggcca cccacgccgt
      601 cctggacgaa ggtcgatgtg gcatggatcg gcacgatcac cgatccggtg tggggatccg
      661 gatcctgacc agcatggatc gcgcgagtgg cgaagcctgt cactctccca ccctacggcg
      721 atcgactgga ctgcctgcgg acccgccagc ccgtaccaca accgttccga cgatcttgtc
      781 tgcgaaggtc tgatgcttga cgtcccacag cggccacaga tagccgatcc cgaactccag
      841 caagtggcag atctggcgaa cgacggctcg tccgaagccc actggctgac cggtctgcat
      901 catgaccaac ctgctattgg ctacccggcg accgaggctt cggcctgtgg tgccctgcaa
      961 gtagccggag ttccagagcc cgaagcccag caaacctagg taacccacca ccgcgagtat
     1021 ctggctccac tccggggtga ctgtcatgga gccgatagcc aggagcaggt tcagcacgat
     1081 ggccgggatc acgaagtcga tcgaaaagct gaccactctg gcaccgaaat ccgccagcgg
     1141 aggccctggc acgggaacag cattcgccag cgatacggat ggtggcgctg atcgggcgcc
     1201 ggtgtcattc tctggtgtca ccggagtggc aagcctcgct tgatggccga gggcctggag
     1261 gtgaaggccc ggatcaggat caaggacccc cgctccggcg atctccggtg atcgtgtacc
     1321 gtgcggcaat cgtccgaatc gcggtggcgg gacgggttgt ggcggttgcc cgaagtgcgg
     1381 cactcgtacg acctgcggcg attgcacgca cggggctggc cagcccggtg gtgggggtac
     1441 gggtggtggc ggtaccggtg ccgggagccg agtcggtcgc ttcgcggacg acggtgcggc
     1501 aggtggttgg tcgacggaag ggctgtcgac ctgggccaag ggatcctcat accgcggctg
     1561 ggaactcgtc atcgattcga acccctcgct ggcctgacgc gtttgtgggc gatcacgcta
     1621 gcggaatacg gtccatcggc cgtcaccgcc cagccaggaa ccccagcacg tcttgccggg
     1681 tgaccactcc cgccggttta ccgtcgatca ggaccatggc gccatcggcc tcagccaacg
     1741 cccgcatgag tgatccgatc gactcacccc caccaatcgt cggcagcggt gccgccatat
     1801 gagcctcgat gcggtcggcg agctgagcat ccccggcgaa caggtcctgg agcagggttc
     1861 gttcgttaac agcgccaatc acctcggccg ccatcaccgg tggttcggcc gcgaccaccg
     1921 gcagctggga gaccccgaac tcgcgcagaa tcatcacgac ctcggcgacc gtctcattcg
     1981 gatgggtgtg caccagcttg gggatcgccc catccttacc gaccagcacg tccgagaccg
     2041 tcgcgcccga ggagtccggg ggaaggaaac cgtgtgaagc catccacgcg tcgttgaata
     2101 ccttgcccag gtagccgcgt ccgccgtcgg gcagcagcac gacgatcact gactcgggag
     2161 cagcccgctc cgccagctgc agcgcgccca ccaccgccat cccgcaggat ccgccgagga
     2221 gcaatccctc ctcccgggcc agccgccggg tcatggtgaa ggagtcggcg tcggagatcg
     2281 ggatcacctc atcgcagatg gtccggtcaa aggtccgggg ccagaagtcc tcccccaccc
     2341 cctccaccag gtaaggtcgg ccgctgccgc ccgagtacac cgagccctcc ggatcgattc
     2401 cgacgacctg aacccggccg tcgctgacct ctttgaggta gcgcccggtg ccggagatgg
     2461 tcccgccggt gccgattccg gcgacgaagt gcgtgatccg gccctcagtc tgagcccaca
     2521 gctcggggcc ggtgctgtgg tagtggctgg tcgagttctc cgggttggag tactgatcgg
     2581 gcttccatgc tccgtcgatc tcggtggcga cccggtcgga caccgagtaa tacgagtctg
     2641 gatggtcagc cggaacggcc gtggggcaca ccaggacctc cgccccgtat gccttgagca
     2701 catcgcgctt gtcctccccc accttgtcgg ggcagacgaa caggcaccgg tagcccttac
     2761 gttgagcgac cagcgccagt cctatcccgg tgttgcccga ggtcggctcc acgatggtgc
     2821 cacccggttg cagctgcccg gatcgctccg ccgcctccac catccgcagc gcgatccggt
     2881 ccttcacgct gcccccaggg ttgaggtatt ccaccttcgc caggacgagc ggcgccacgt
     2941 tctgggccac ggcatttagc cgcaccagcg gagtattacc gacgagatcg atgatgtgct
     3001 cggcgtagtg caccggagcc tcctggtggg aatagagcgg atcgcgctca cgcagcacgc
     3061 tgccgaacct gaggcgtata tcagagtatg ggggtcaccc cgcacggatc ggcgtcgagg
     3121 aggtcttcaa cgatgcagcg tctgctgcga actaccgccg tcatggtcgg tgccaccggc
     3181 gcgacggtcg gtgccgcgta cggggtgctc acccagcaag gacggcgggc tcgccgcaac
     3241 atcgtgatac cgggctggtg cccgttccgg gcggacgggg tgtacctacc ggacgggacc
     3301 ggcccgcacc caccatcagc tgtggcgctc cctgcgcctg ccctggatgt ggtccacttg
     3361 gcgatgctgg gtgattccct ggcggccggc ctgggtgtgg atgggcccga acacctaccc
     3421 ggggcggtgc tggctcgcgg actcgccaag gacgctgacc ggccggtcca gctggacacg
     3481 ctggcgagct gcggctgcac cagccgccgg ctgagcgggc aggtggacct cgccctgagt
     3541 gatccgcccc gagtggccgt catcatgatc ggggctaatg acgtgacccg gcgggtgccg
     3601 ccgtgggagt cagcgaaact gctcggcgag gcggtgtccc gactgcgagc catcggcacc
     3661 acggtgatcg tcggtacctg tccggatctc ggcacgatcc gaccgatccc gcaaccactg
     3721 cgcgcccttg cgcatacttc tagcctgacc cttgcccgct tgcagcgcga cgcggtatac
     3781 cgcgccggtg gcctggtggt cccgctggcc caactgctcg ctcacgactt cctcacccag
     3841 cccgagacca tgttcagcca ggaccactat cacccgtcct ctgccggtta tgacgccgcc
     3901 tgcacggtgt tgctcccggc attgtgttcg gcactgcggg cctcagcgct gccggatgaa
     3961 ggaggcaaca cagaaacgga cccggccact cctgcaggga gaccgggtcc gtgagagccg
     4021 ggtggttggc tactcgcttt ggaaatacga caacagccgc aggatctcca ggtacagcca
     4081 gaccagggtg acggtgagac cgaaagcgat gtaccacgcg gtcttctccg gcgcgccagc
     4141 ccggatcgcc tcgtcggcgg cgtcgaagtc aagcaggagg ctgaacgccg cgatcccgat
     4201 gacgacgagg ctgaagacga tcgccagcgg gccgccgctg cgcagcccca gtccaccggg
     4261 caggaaaaag ctcgcgatga ggttcaccag catcagaccg acggcaccga tcagtgcacc
     4321 ggtgatccac ttggtgaagc gcggagtgac cttcaccgcc ccggtcttgt agacgaccag
     4381 catcccggcg aacaccagca ccgtgccggt gatcgcctcc agcacgaggg agctgctacc
     4441 tgtgtagcgt gcgaccgtgg agctcatcgc cccgctgatg ccaccgagga agacgccctc
     4501 aacagccgcg taagccagga tcagcggtgg gctcaccacc ttcttgaaga tcaccaccag
     4561 ggcgagaacg aacccgatca gcgcagcagg aagggctagt ccccacaggc cgctgaagta
     4621 ggtagccgca ccggtggcga tcagcactgc caaggtgatg ctcgtcttgg tgaccacatc
     4681 gtcgaccgtc atcggtcggc tggtagtcgg cagagcgccg ccatagcgag actgagtatc
     4741 cgattcggaa tacccagatc ccgggaagcg tgcgggggcc gagttgaaac ccgcgtagcc
     4801 gccgccccct acgggaagat tgcggaatgc ggggttgctg gtggagcgca ccgtgttcct
     4861 tcctaagtgg gcgatgccga ccgtcaaagg gttaacgcgc ctgaggcagg tccggttccc
     4921 gatcggtttt tggactgtac ctccgcctgg tgaggtgccg acaagcgagc gcgatcgtgg
     4981 cgcgttactg tgcgcgataa gaaggacccg gacccggaca cggcgcggag gtagcgatgg
     5041 attggtgggg ctgggtgatc gttgcggtgg tcgtcgtact gctgctgatc acgctcgccg
     5101 tgctggttca gcgcaagaga cggcgcggtg gcgtgatcgg gctgggacgc tcgggctcgg
     5161 gcgactcgag ccggaggaaa cgacggtgac cacaccaact cccgcgctcc tgctgcgggc
     5221 cagtgagctg
//
LOCUS       DASVXZ010000331         2489 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_304203, whole genome shotgun sequence.
ACCESSION   DASVXZ010000331 DASVXZ010000000
VERSION     DASVXZ010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304203"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..1668
                     /locus_tag="VF788_06835"
     CDS             238..1668
                     /locus_tag="VF788_06835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019811630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEX8933895.1"
                     /translation="MLALLGAHAVITDRQRLRTYECDGLAQYRVVPGLVVLPESAEQI
                     AGVVRACAAAGVPFVARGSGTGLSGGALPHAEGVLVVTSRMRRILEVDIANERAIVEP
                     GVINLDVTRAAAPHGWYFAPDPSSQQICSVGGNVAENSGGAHCQKYGFTTHHVLGAEV
                     VTPDGELVWLGGTTRDTPGYDLLGAFVGSEGTLGIATKIVVRLLREPESVRCLLAAFP
                     GVDEAGTAVSGIIADGVTPAAIEMMDALAIEAAEAAVACGYPEGAGAVLIVELDGPTA
                     EVEHTFAAVHRHCTDAGASEIRVARDAAQRALFWKGRKSAFAAVGRISPDYIVQDGVI
                     PRTALPQVLRRIAELSAGTGVRVANVFHAGDGNLHPLVLFDEAKPGEAQLAEQVSGAI
                     LDLCIEYGGSITGEHGVGMDKARYMPRMFSDDDLDTMQRMRCAFDPAGVCNPGKVFPT
                     PRLCGEVPGKRKGAHPLQAAGLAEQF"
     gene            1668..>2489
                     /locus_tag="VF788_06840"
     CDS             1668..>2489
                     /locus_tag="VF788_06840"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8933896.1"
                     /translation="MVAPSLDVLRVACADVAHATPDDTVDGVPARWVARPSSTEEVSA
                     VLQAAAGGGLRVAARGSGTRLSWGNPPTDLDLIVDISRMSAVLAYAAGDLVVTVQAGL
                     RMGDLLTTLAGHRQRLALDGSDVLGGTIGGTIATAASGPLRYRYGSVRDLLIGITVVL
                     ADGTVARSGGTVVKNVAGYDLGKLYTGSLGTLGIITEAVFRLHPLPETCRWITVLATD
                     ATRAAAAIAAIRASQHDPVALEVNGSARGGPVTVGVAIEGVTGGIDARAAALATLL"
BASE COUNT          390 a          783 c          912 g          404 t
ORIGIN      
        1 caccgagatg ccagccgcgg tgcgcgaacg cgcgggggaa gggcccatcg aggaatgggt
       61 gtgcgggcag ggtcaccccg gcagtctccg gaacttacgc tggaatcgct accagcatcc
      121 atgtgactct agacaggtgc cctgtgaccg cgacaagcat ccatgtgacc gttcgcgagc
      181 tgggaggagg tggtgacgac gagcgagagt ggcgtgctgg gggtgctcac tgcggagatg
      241 ctcgcgctgc tcggggctca tgcggtgatc accgatcggc agcggttgcg tacgtacgag
      301 tgtgacgggc tggcgcagta ccgggtggtg ccgggcctgg tggtgctgcc ggagtcagcc
      361 gagcagatcg ccggggtggt acgggcctgt gccgccgcgg gggtgccgtt cgtggcccgc
      421 ggctcgggta ccgggctgtc cggaggggca ctaccgcatg ccgagggagt ccttgtcgtg
      481 acctcccgca tgcgccgcat cctggaggtt gacatcgcca acgagcgcgc gatcgtcgag
      541 ccgggcgtga tcaacttaga cgtgaccagg gccgccgctc cacacggctg gtacttcgca
      601 cccgacccgt ccagccagca gatctgttcg gtgggcggca acgtggcaga gaactccggt
      661 ggggcgcact gccagaagta cgggttcacc acccaccatg tgctaggcgc cgaggtcgtc
      721 actcccgatg gcgagctggt gtggctcggc ggtacgacgc gcgatacccc cggttacgac
      781 ctgctcggcg cgttcgtcgg cagcgaggga accctcggaa ttgccaccaa gatcgtggtt
      841 cggctgttgc gggagccgga gtcggtgcga tgcctgctcg ccgctttccc cggagtggat
      901 gaggccggga ccgcagtgtc cgggatcatc gccgatggcg tcaccccggc ggcgatcgag
      961 atgatggatg cgctggcgat cgaggctgcg gaggccgccg tggcctgcgg ttatcccgag
     1021 ggcgccggtg ccgtgctgat tgtggagttg gatggcccaa ccgccgaggt ggaacacaca
     1081 ttcgccgcgg tacaccggca ctgcacagac gcaggcgcct ccgaaatccg ggtcgcccgg
     1141 gatgccgcgc agcgcgcatt gttctggaag ggtcgcaagt ccgcgtttgc cgcggtgggg
     1201 cggatcagcc cggactacat cgtgcaggat ggcgtgatcc cccggactgc actgcctcag
     1261 gtgctacgcc gcatcgccga gctgtcagcc ggcaccggcg tgcgcgtggc caacgtgttc
     1321 cacgccggcg atggcaacct gcacccgctg gtgctgttcg atgaggcgaa accgggggag
     1381 gcgcagctgg cggagcaggt ctccggcgcg attctggact tgtgtatcga atacggaggc
     1441 tcgatcaccg gggagcatgg cgtgggaatg gacaaggcgc ggtacatgcc gcggatgttc
     1501 agcgacgacg atctggacac catgcagcgg atgcgctgtg ccttcgatcc cgctggggta
     1561 tgcaacccgg gcaaggtgtt tcccacaccc cggttgtgcg gcgaagtccc cggaaaacgc
     1621 aagggtgcgc acccgctgca ggccgctggc ttggccgaac aattctaatg gtcgccccaa
     1681 gccttgacgt actgcgcgtg gcctgcgctg atgtagctca cgccacgccc gatgacaccg
     1741 tggacggggt gccggcgcgc tgggtggcgc ggccgagcag caccgaagag gtgtcagcag
     1801 tgctgcaggc ggcggctggt gggggattgc gggtagccgc ccgaggcagc ggcacccggc
     1861 tgtcctgggg taacccccca acggatctgg atctgatcgt ggacatcagc cggatgagcg
     1921 cggtgctcgc ctatgccgcc ggagacctgg tggtcacggt gcaagccggc ctacgcatgg
     1981 gggacctcct gacaacgctg gcggggcacc ggcagcggct ggcgttagac ggcagcgacg
     2041 tcctcggagg caccatcgga ggcaccatcg ccacggccgc atcgggtccg ctgcgctacc
     2101 ggtatggctc ggtgcgagac cttctcatcg gcatcaccgt ggtactcgcc gacgggaccg
     2161 tcgcccgttc tggcgggacc gtggtcaaga acgtcgccgg ttacgatcta ggcaagctct
     2221 acaccggctc gctgggcacc ctgggaatca tcaccgaggc ggtcttccgg ctgcacccgc
     2281 tgcccgagac gtgtcgctgg atcaccgtgc tggccaccga tgccacccgt gcggcggcag
     2341 ccatcgctgc gatcagggca tcgcagcacg acccggttgc gctcgaggtg aacgggagcg
     2401 cgcggggagg tcccgtgacc gtcggggtcg ccatagaggg tgtcactggg ggaatcgatg
     2461 cccgcgccgc tgcactggcg accctgctc
//
LOCUS       DASVXZ010000332         9015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1631370, whole genome shotgun sequence.
ACCESSION   DASVXZ010000332 DASVXZ010000000
VERSION     DASVXZ010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9015
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1631370"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(251..1156)
                     /locus_tag="VF788_06845"
     CDS             complement(251..1156)
                     /locus_tag="VF788_06845"
                     /inference="COORDINATES: protein motif:HMM:NF033634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4231 domain-containing protein"
                     /protein_id="HEX8933897.1"
                     /translation="MSAPDLVEELWREQSLWSRTANRMKKRIERARFTALAATVTAAV
                     LSAAVGLMMTSPAAWAADASRVLAVLAGLGVGILPLLRPYWSGQRLRDWTRARSMSEA
                     LKSDVYLWLARAGQYRGDAQAARLRDETDKVRADGADLLRYRNGVVAEERPLPAVHDL
                     ISYFAVRVTGQVDGYYRRRARELQQRLRWFRSVGIALGATGVVVGAFVAAGGGTSFAP
                     WIAVITTVSTALAVHVAAGRYDFQLIEFLRTAERLDQLRRKAATTVDQTELGALAVEA
                     EGVISIQNEGWMAKLAEDPAEQKAS"
     gene            1317..1814
                     /locus_tag="VF788_06850"
     CDS             1317..1814
                     /locus_tag="VF788_06850"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEX8933898.1"
                     /translation="MERKVDVSRDEGVIVRGARPPATTNLVEAAGQPIGGGLIKPGYD
                     TRLTNEDLAPLRIQSWGSYNIFAFWMSDVHSVGGYVTAGSLFALGLGSWQVLVALLIG
                     IGIVNVFCNPVAKPSQQIGVPYPVICRSVFGVLGRERADLRHRHRRHSTSWPTSSHRP
                     STSPT"
     gene            complement(2053..2685)
                     /locus_tag="VF788_06855"
     CDS             complement(2053..2685)
                     /locus_tag="VF788_06855"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8933899.1"
                     /translation="MPQALSSFRQHPPSLPQVHNVIVHRSAFGELSDIGTASLITVNP
                     WAVVLSLRRTLVSLTLNLMAAVRATRAALPLMLAAGNGAIVNVVSVNAFLPDPAVMDY
                     SAAKAALANFSKSLSKEVGPQGIRVNTVSPGPVATDLWLGTDGVAATAARASGVPPEE
                     VADSAVRSTATGRFTQPNEVADLVLLLVSQRAKNVTGTNITIDGGLTTTL"
     gene            2667..4592
                     /gene="nhaA"
                     /locus_tag="VF788_06860"
     CDS             2667..4592
                     /gene="nhaA"
                     /locus_tag="VF788_06860"
                     /inference="COORDINATES: protein motif:HMM:NF018648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEX8933900.1"
                     /translation="MTEPEASAAPFVRRTAWVRGLETPLRRFLRTESGSAAVLLAATL
                     TALVWANIDVASYESVWRVPLSIRLGGSAVSQTLREWVNTGLMTFFFFVVGLEARREF
                     DMGELRERQRVVLPLVAGIGGMVVPVAIYLVANAGRPSAHGWGIAMSTDTAFALGLLA
                     LVGRRLPDTVRAFLLTVVVVDDVVALVVIATVYSRHVAPQPLVITLVIFGLILLVRAS
                     RIRHGLVYAVLGAAAWVALFFSGVEPVVVGLVMGLLTFAYAPARDDLERATGLFRLFR
                     EQPTPELARSASSGLTAALSPNERLLQLYHPWTSYLIVPLFALANAGIAISGEFLSRA
                     FTSPIALGILLGYVVGKPVGIVGSSWLVTLLNRNQLRPPVGWAAIAGGGAIAGIGFTV
                     SLLIATLAFDGVELQEAKLGVLSAALCASLAAWVIFGVTALLPPRRRIQALLGTAEPI
                     IDLAVPVDPDHDHIRGPGEALVTVVEYGDFECPYCGQAEPVVRELLADFGDVRYVWRH
                     LPLTDVHPRAELAAEAAEAAASQGAFWPMHDLLLDHQQDLRPADLTRYAGDLGLDVER
                     FRAGLREHVHAPRIAEDVDSASLSSVSGTPTFFINGRRHHGAYDIATLTTAVKTAKAR
                     ATITTQPGLVDNTVDET"
     gene            4655..5260
                     /locus_tag="VF788_06865"
     CDS             4655..5260
                     /locus_tag="VF788_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003083129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8933901.1"
                     /translation="MSFVSRGFAGRRRAAPPGRLPPGQYDVGDGFPVLSAGPTPHTSR
                     ASWDFRIRGQVDEVRRWSWTEFQGLSRESVSVDVHCVTSWSKFDTRWEGVSVDTLLAD
                     VVTAAEYAVAFSDGGYTTNLPLADLTDRQAWVVDTYDGQPREPEHGGPARLLVPHLYF
                     WKSAKWIRGLELTLHDEPGFWETFGYHNYGDPWREQRYAGD"
     gene            5230..5979
                     /locus_tag="VF788_06870"
     CDS             5230..5979
                     /locus_tag="VF788_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin reductase"
                     /protein_id="HEX8933902.1"
                     /translation="MAGTALRRRLSWQRAEVLALHRETRRACRLSLRPPDWPGHLPGQ
                     HVDVRLTAADGYTAQRSYSISSPPERPEIELIVERLEDGEVSPYLTDVLRRGDLLELR
                     GPVGGYFIWPTGTNEPVQLIAGGSGVVPFLSMLGHHRATGGSRSVRLLYSARTVDDLI
                     GRDELDHQPATVEVNLTLTRGVPAGWPGLTGRIDAVLLAGHTIPPAQAPHLLVCGPTG
                     FVETVAGALIELGHDPGRIKTERFGASGGPS"
     gene            5976..6263
                     /locus_tag="VF788_06875"
     CDS             5976..6263
                     /locus_tag="VF788_06875"
                     /inference="COORDINATES: protein motif:HMM:NF040451.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6510 family protein"
                     /protein_id="HEX8933903.1"
                     /translation="MTDPDGVADRRLDANAAAGPLAELFTVDLTAAVTTCAGCGNRAP
                     LAAHPLYADAPALVVRCPNCAGVVLRYASNGSRLRLDLTGARLLTVTLGLD"
     gene            6420..6821
                     /locus_tag="VF788_06880"
     CDS             6420..6821
                     /locus_tag="VF788_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8933904.1"
                     /translation="MAFPGLQHVAITVSDLDRSTQWYSTLFGAEPVLDEDEDSGTFHH
                     TVFALEGGMLFGLHTHMGAETKDQADERRTGLDHVAFALAGTAELEQWQTRLDELGIA
                     HGGIKKAHYGSGISFRDPDNIGLEFFIAPGS"
     gene            7503..>9015
                     /locus_tag="VF788_06885"
     CDS             7503..>9015
                     /locus_tag="VF788_06885"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX8933905.1"
                     /translation="MVSLSASEDVAGFACLALRPELLHALAELGYEEPTPIQREAIPP
                     LLLGRDLLGQAATGTGKTAAFALPVLQRMPGDGRGAVPVALVLVPTRELAMQVSQAFH
                     RYGRGLGVRVLPIYGGQPIGRQLRVLERGVDVVVATPGRAIDHIGRGTLRLHGVETVV
                     LDEADEMLDMGFAEDIEAILDGIPEDRQTVLFSATMPSRVDRIARRHLRDPVRIEMGR
                     EATAAGTGPLVRQSAYVVTRAQKPAALGRVLDVEAPSAAIVFCRTRDEVDQLTETLNG
                     RGYRAEALHGGMGQEQRDRVMGRLRNGTADLLIATDLAARGLDIEQLTHVVNYNVPSA
                     PDAYVHRIGRVGRAGRGGVAITLAEPREHRMLKAIERVTKQRITVEKVPTVADLRARR
                     FELTRAALRESLLTDDLERFRVVVETLADEFDDMEVALAAVKLAHESLAGEVDEEEFP
                     DVAEVPGRKRPDPRGADGRRGRARTAELTRVFFGVGRSTGIRPQDLVGAITGES"
BASE COUNT         1452 a         2992 c         3026 g         1545 t
ORIGIN      
        1 ccagggcagt aagccggcga ccgagtaaaa cgatgcgact tattcggcga agcggggaga
       61 atgctgggat gaggcgcgta catttaccgg aaaagccgga agaaccggaa gaagtagggg
      121 gagcagcgag tcgcaacgtc acctccatgg cgcggacata gcggggcctt aggtgagggc
      181 ttcgatgcgt agtcgcgatc gtcaccgcag gccgcctccc gagcagagac acatcgtcgc
      241 ttgatcagcg ctacgacgcc ttctgctcgg ctggatcctc agcgagcttg gccatccagc
      301 cctcgttctg gatggagatg acgccctcgg cctcgacagc gagcgcacca agctccgtct
      361 ggtcgaccgt ggtggcggcc ttgcgacgca gctggtcgag gcgttccgcg gtgcgcagaa
      421 actcgatcag ctggaagtcg taccggcccg ccgcgacgtg cacggccagc gcggtgctga
      481 cggtcgtgat cacggcgatc cagggggcga atgacgtgcc cccacccgcg gccacgaacg
      541 caccgacgac gacaccggtg gccccgagcg cgatccccac gctgcgaaac catcgcagcc
      601 gctgttgcag ctcccgggcc cggcgccggt agtagccgtc aacctgcccg gtcacgcgca
      661 ccgcgaagta tgagatcagg tcatgcaccg ccggcagcgg ccgctcctcg gcgacgacgc
      721 cgttccggta gcggagcagg tcggcgccgt cggcgcggac cttgtcggtc tcgtcccgca
      781 gccgagcggc ctgggcgtcg ccacggtact gcccggcgcg cgccagccat aggtacacat
      841 cactcttgag cgcctcggac atcgaacgag cccgagtcca atcccgcagc cgttgtccgc
      901 tccagtacgg tcgaagcaac gggagaatcc ctacgcccaa ccccgcgaga acggccagca
      961 cccggctggc gtcggccgcc caggcagccg gcgaggtcat catcagccca acggcagcgc
     1021 tcagaactgc cgcggtcacg gtggccgcca gggcagtgaa gcgggcgcgt tcgatgcgct
     1081 tcttcatccg gttggcggtg cgcgaccaca gcgactgctc gcgccacagc tcttcgacga
     1141 gatcaggagc cgacatgatc accagcctcc cactcacctg gccgcactcc caaccatcgt
     1201 catcccaaac cacgtcacaa atgccaaggg gccacgctcg atacactcga tccaggtgcc
     1261 tggccgtctg tgagtgtcac ggcagtccgg ccgtctacta ttccgacaaa cgggtgatgg
     1321 agcgcaaggt agatgtttcg cgtgatgagg gcgtaatagt ccgcggggcg cgaccgccgg
     1381 ccacgacgaa cctcgtcgaa gccgccggtc agccgatcgg tggcggcctg atcaagcccg
     1441 gctacgacac ccggctgacc aatgaggacc tcgcgccgtt gcgcatacag tcctggggtt
     1501 cgtacaacat cttcgcgttc tggatgtccg atgtgcacag cgtcggcgga tacgtcactg
     1561 ccggaagttt gttcgccctc gggctgggca gctggcaggt cctcgtcgcc ttgctgatcg
     1621 ggatcggcat cgtgaacgtg ttctgcaacc cggtggccaa acccagccag cagatcggcg
     1681 tgccgtaccc ggtgatctgt cgcagcgtgt ttggggtgct ggggcgcgaa cgtgctgacc
     1741 ttcgccatcg ccaccgtcgg cattcaacat cgtggccaac atcatctcac cggccttcga
     1801 cttctccaac gtgaacccgc gaaagatcag ctggcgggcc ggcgggatga tcgcggcggt
     1861 cggctcggtg ctgatcactc tgtggaaacc tgtacaacaa cccccgaggt gatccactac
     1921 accctggaga ccctgggcgc gttcataggc ccgctgtgct gatcgggctg ggcgtctacc
     1981 tggccgtcca gaaggtcacc ccactgcgca aggttccggc gaaggtagcc gcctaggggg
     2041 agctagcacg ggtcacagcg tcgtggtcag gccgccgtcg atggtgatgt tcgtgccggt
     2101 gacattcttc gcacgctggc tcaccaggag caagacgaga tctgccacct cgttcggttg
     2161 agtgaacctg ccggtcgccg tactcctcac ggcactgtcg gcgacctcct cgggcggcac
     2221 accgctcgcg cgcgcagccg tggccgcgac gccgtcggtt cccagccaca ggtctgtcgc
     2281 gacggggccg ggactgaccg tgttcactcg gatgccttgc gggccgactt ccttggacag
     2341 tgacttcgag aagttcgcga gcgcagcttt agcggcgctg tagtccatga cggcgggatc
     2401 gggcaggaag gcgttcacgg agacgacatt cacgatcgcg ccgttgcccg ccgccagcat
     2461 gagaggcagc gcagcccggg tggcgcgaac ggcagccatc aggttgaggg tgagagaaac
     2521 tagtgtgcgt cgcaagctca ggaccacagc ccacggattt accgtaatga ggctcgctgt
     2581 tccgatatcg ctgagctcac cgaaagcgga acggtggacg atcacgttgt gtacctgcgg
     2641 gagactaggg gggtgctgcc tgaacgatga cagagcctga ggcatcggct gcgcccttcg
     2701 tcaggcggac ggcgtgggtg cgcggtcttg agacaccgct gcgtaggttc ctgcgcaccg
     2761 agtcgggcag cgccgcagtc ctgctggccg ccaccctaac cgcgctggtc tgggcgaaca
     2821 tcgatgtggc gtcgtatgag tcggtgtggc gggtgccgct gtcgatccgc ctcgggggtt
     2881 ctgccgtgtc gcagaccctt cgcgagtggg tgaacaccgg tctgatgacg ttcttctttt
     2941 tcgtcgtcgg gctggaagca cgccgtgagt tcgacatggg cgagttgcgc gagcggcagc
     3001 gggtcgtcct cccgctggtg gcgggtatcg gggggatggt cgtgccggtt gcgatctacc
     3061 tggtcgcgaa tgcggggcgc ccgtcagcac atggctgggg tatcgcgatg tcgacggaca
     3121 cggctttcgc gctcgggctt ctcgcgctgg tcgggcggcg cctcccggac accgtgcggg
     3181 ccttcctgct caccgtcgtt gtcgtcgacg atgtcgtggc gcttgtcgtg atcgcgacgg
     3241 tctacagcag gcacgtggcg ccgcagccgc tcgtcatcac gctggtgatc ttcgggttga
     3301 tcctcctcgt ccgcgctagc cggatccggc acggcctggt ctatgccgta cttggcgcgg
     3361 ccgcctgggt ggcgctgttt ttctccggtg tcgaacccgt tgttgtcggt ctggtgatgg
     3421 ggctgctgac cttcgcctat gcacccgcgc gcgacgacct cgagcgcgcg acggggctgt
     3481 tccggctctt ccgggagcag ccgactcccg agctcgcgcg ctcggcgagt agcggcctga
     3541 cggcggcgct gtcgcccaac gagcgtttgc tgcagctcta ccacccctgg accagctacc
     3601 tgatcgtgcc actgttcgcg ctggccaacg ccggcatcgc gatcagcggc gagttcctct
     3661 cccgcgcctt cacctcgccg atcgccctcg gaatcctgct gggctatgtc gtaggaaagc
     3721 cggtcggcat cgtcggcagc tcgtggctcg tcaccctgtt gaaccgcaac cagctgcgtc
     3781 ccccggtcgg ctgggccgcc attgccggtg gtggtgcgat cgccggtatc ggcttcaccg
     3841 tgtccctgct gatcgcaacc ctcgcctttg acggcgtcga gctgcaggaa gccaagctgg
     3901 gtgtgctatc cgcggcgttg tgcgcctccc tcgcagcgtg ggtcatcttc ggcgtcaccg
     3961 cgctgctccc gccacggcgg cggatacaag ccctgctggg taccgcggag cccattatcg
     4021 accttgccgt gccggtcgat ccggaccatg accacatccg cggcccgggc gaggctttgg
     4081 tcaccgtggt cgagtacggc gacttcgaat gcccctactg cggccaggca gaacccgtcg
     4141 tccgcgagct gctcgccgac ttcggggacg tgcgctatgt ctggcgccac cttcccctca
     4201 ccgacgtcca cccacgtgcc gaactcgcgg ctgaagccgc cgaggccgca gccagccaag
     4261 gtgcattctg gccaatgcac gacctgctcc tggaccatca gcaggatctg cggccggccg
     4321 atctgacccg ttacgcgggc gatctcggcc tcgacgtcga acggttccgc gccgggctac
     4381 gtgagcacgt ccatgcaccc cgaatcgccg aagacgtcga ctccgccagc ctcagcagcg
     4441 tatccggcac ccccacgttc ttcatcaacg gacggcgaca tcacggcgcc tacgacatcg
     4501 ccactctcac caccgccgtc aagaccgcca aggcacgcgc gacgatcaca acccagccag
     4561 gactcgtcga caacaccgtg gacgagacct gactgctggt gccggcttcc tcccggtggg
     4621 atgctcgcac cggatgctga cgggaggtgc cggcatgtcg ttcgtgtccc gcgggttcgc
     4681 cggtcgacgc cgtgctgctc cacccggccg gttgccgccg gggcaatacg acgttgggga
     4741 cgggtttccc gtgctgtccg ccggtccgac cccgcatacc tcgcgggcca gctgggactt
     4801 ccgaatccgg gggcaggtcg atgaggtgcg ccgctggagt tggacagagt tccaggggtt
     4861 gtcccgcgaa tcggtttccg ttgatgtgca ttgcgtgacc agctggtcga agttcgacac
     4921 ccggtgggag ggggtctcgg tggacacctt gctcgctgac gtcgtcacgg ccgccgagta
     4981 cgcggtcgca ttcagcgacg gtggctacac gaccaacctg ccgttggccg acctcaccga
     5041 caggcaggcc tgggtggtcg acacctacga cggtcaacca cgcgagcccg agcatggtgg
     5101 accggcacgg ctgctcgtcc cgcacctgta cttctggaaa tccgcaaagt ggatccgcgg
     5161 actcgagctg accctgcacg acgagcccgg gttctgggaa acattcggct accacaacta
     5221 cggggacccg tggcgggaac agcgctacgc cggagactga gctggcaacg cgcagaggtc
     5281 ctcgcgctgc accgagagac ccgacgcgcg tgccggctca gccttcgccc tccagactgg
     5341 ccggggcacc tgccgggcca gcacgtcgac gtgcgcctga ccgccgccga cggctacacc
     5401 gcgcagcgca gctactcaat ctcgtctccg ccggagcgac ccgagatcga actgatcgtg
     5461 gagcgcttgg aggacgggga ggtctcgccg tatctcaccg acgtcctgcg cagaggtgac
     5521 cttctcgagc tccgcggccc ggtcggcggc tacttcatct ggcccaccgg caccaacgag
     5581 ccagtgcagt tgatcgccgg cggctccggt gtggtgccct tcctgtcgat gctcggccat
     5641 caccgtgcta ccggaggctc gaggtccgtg cggctgctgt actccgcacg gaccgtcgac
     5701 gacctcatcg gccgggatga gctggatcac caaccggcca ccgtcgaggt gaatctgacg
     5761 ctcacccgcg gggtgcccgc tggttggcct gggttgaccg gacgaatcga cgcggtgctg
     5821 ctggcagggc acaccattcc gccggcacag gcaccgcatc tgctggtgtg cggcccgacc
     5881 ggcttcgtcg agaccgtcgc cggcgcgttg atcgagctcg gtcacgaccc aggccggatt
     5941 aagaccgaac gattcggagc gagcggaggc ccatcatgac cgatcccgac ggggtggcag
     6001 accggcggct ggacgccaac gcggctgccg gtccgctcgc cgaactgttc accgtggacc
     6061 tgacggcggc tgtaaccacc tgcgccgggt gcgggaaccg tgcgccgctg gccgcgcacc
     6121 cgctctacgc tgatgcccca gccctggtgg tgcgctgccc caactgcgcc ggtgtcgtgc
     6181 tgcgctacgc cagcaacggg agccggttgc ggctcgatct gaccggggcg aggctgctca
     6241 ccgtcacgct tgggttggac tgatcagcgg gcggagctga gccgcaccgt cgcggtctgg
     6301 gctagctcag ccgtgctggc gccggacccc gccgacccga ctattgccgt cgctagcggc
     6361 cgtcgccatg ctgacctcaa ccggcacccg gccgccgccc gaccaagagg agtccttcga
     6421 tggccttccc cggccttcag cacgtcgcga tcaccgtctc agacctcgat cgcagtaccc
     6481 agtggtactc aacgctgttc ggcgccgaac ccgtcctcga tgaagacgag gactcaggaa
     6541 cgttccacca tactgtcttc gcgctcgagg gcggcatgct ctttgggctg catacccaca
     6601 tgggagccga gaccaaggac caagccgacg agcggcgaac gggcctcgat cacgtcgcct
     6661 tcgcactggc tggaaccgct gagctcgagc agtggcaaac tcgcctcgac gagctcggca
     6721 tcgcccacgg cgggatcaag aaggcccact acggcagcgg catctccttc cgcgaccccg
     6781 acaacatcgg gctcgaattc ttcatcgcac ccggcagctg atcctccaca gacgcacaca
     6841 gtcaagagtg gcgctccggc ggtattcaaa ccctgccacg cagggtgcag gtcagtcccg
     6901 tagcgggcag gggcgccccg cggccgtgct gccaggctgg atcgtccgtc gcgaatggtg
     6961 ctatcaggcc gacgcggctc tgcgtggcct tgtcgcacac tccgtctggt ggcggccccg
     7021 gtcgccagga tctcctcgag gaggccagca tggccagggc ggtgagcagg acggtgcggc
     7081 aaccgctcat tggccgcgta accaccgcca gcctccgccc ggacggctcg tctgaggtgc
     7141 catgaaccct ccgcatgcca cggacgacgt aggaattaac ctctcgtcgc actcggactc
     7201 accggcgctc gtccttttaa gcagctcgcc gaaacgcgcc ggggcactgt tggattgagg
     7261 cggagagcgc cctcgtcctg gaccaagcag ggtgccaaga cccttcaatc gccgtggcag
     7321 acccctacga gaccggacat ctgaaggctt ctcgcatggc tttggggcga gcggatggag
     7381 caggtcgggc ggcccgatcg cgcaatgcaa ctgtgcctcg cggctcccta gcgggcacgg
     7441 ggggtgctgg ttaggtgagc atggatggga cccggacggg gagcaggatg atcaggaggg
     7501 cgatggtgag tttgagcgcg tctgaggatg tggcgggttt tgcttgtctg gcgctgcggc
     7561 ccgagttgtt gcatgccttg gctgagcttg gctatgagga gcctacgcca atccagcggg
     7621 aggcgatccc gccgttgctg ttggggcgtg atctgctcgg tcaggctgcg acgggaacgg
     7681 gaaagacggc ggcgttcgcg ttgccggtgt tgcagcgaat gcccggtgac gggcgaggtg
     7741 cggtgccggt ggcgctggtg ctcgtaccta cacgtgagct ggccatgcag gtctcacaag
     7801 cgttccatcg ctacgggcgc ggtcttggtg ttcgggtcct tccgatctat ggcgggcagc
     7861 cgattggccg gcagctacgg gtgctggaac gcggggttga tgtcgtggtc gccacacctg
     7921 gccgcgcaat tgaccatatc ggtcgtggaa cccttcgtct gcacggcgtg gagacggtcg
     7981 tgctcgatga ggcggatgag atgctcgata tgggattcgc cgaggacatc gaggcaatcc
     8041 tcgacggcat tcctgaggat aggcagaccg tgctgttctc cgccacgatg ccgtctcgcg
     8101 tcgacaggat cgctcgccgc cacctgcgtg atccggtccg gattgagatg ggccgcgagg
     8161 cgacggccgc gggtaccggc ccgctggtgc ggcagagcgc gtatgtggtc acccgcgcgc
     8221 aaaagcctgc tgctctcgga cgggtgttag acgtggaggc gccctcggca gcgattgttt
     8281 tctgccggac ccgggacgag gtcgaccagc tcaccgagac cttgaacgga cgcggctacc
     8341 gcgccgaggc actacacggt gggatgggcc aagagcaacg cgacagggta atggggcgcc
     8401 tgcgcaacgg gaccgccgac ctgctcatcg ccaccgacct ggccgctcgt gggcttgaca
     8461 tcgagcaact gacccacgtg gtcaactaca acgttccgtc agcgccggac gcgtacgtac
     8521 atcgcattgg ccgggtaggc cgtgccggcc gcgggggtgt ggcaatcact ttggccgagc
     8581 cgcgggagca ccggatgctc aaggcgatcg agcgggtgac gaagcagcgg atcacggtgg
     8641 aaaaggtgcc cacggtcgcc gatctgcgcg cacgacgctt tgagctaacc cgcgcggcgt
     8701 tgcgggaaag cctcctcacc gacgatctgg agcgattccg cgtcgtggtc gagacgctcg
     8761 ctgacgagtt cgatgacatg gaggtagcgc tggctgcggt gaagttggct cacgagtccc
     8821 ttgcgggcga agtcgacgaa gaggagttcc cagatgtcgc ggaggtgccc gggcgcaagc
     8881 gaccagatcc gcgtggtgcc gatgggcggc gcggccgtgc ccggacagct gagctgacgc
     8941 gcgtgttctt cggtgtcggg cgtagcaccg gaatccggcc acaggacctg gtcggtgcaa
     9001 taaccgggga gtcgc
//
LOCUS       DASVXZ010000333         2729 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_843142, whole genome shotgun sequence.
ACCESSION   DASVXZ010000333 DASVXZ010000000
VERSION     DASVXZ010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_843142"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..758)
                     /locus_tag="VF788_06890"
     CDS             complement(6..758)
                     /locus_tag="VF788_06890"
                     /inference="COORDINATES: protein motif:HMM:NF024752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8933906.1"
                     /translation="MQELVLRVQAALPGPWHKKVGRPKSCGLYRAVEVACMYLRQNGT
                     EEFLGDLRGVSQSTVSRIVCQLVPVVKAVLEEFVPTAKEAIEMVNGRVCLVDGTITPC
                     WSYAEHRELWSRKHATTGFNAQLVSLLNGGAVYISDPLPGRTHDAAAFTETPVADIVQ
                     HSGGGIADKGYQGCGLITPRKTPPGGELSRGDKENNAVISALRAPVEMLIAHFKSWRI
                     LHTDYRRPYHTYRDAYDAARGLFFFSITWGFE"
     gene            1146..1556
                     /locus_tag="VF788_06895"
     CDS             1146..1556
                     /locus_tag="VF788_06895"
                     /inference="COORDINATES: protein motif:HMM:NF024407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HEX8933907.1"
                     /translation="MLQSAMSEDARWESSSGSAVTPQRLREAVLAGPGAKVGDELRAG
                     VLQWLADPNAIRAALAAEGHVDARRRMLPGEVTVTAVLGLCLFSGEGYDSVLSRVVPA
                     VAPGAAVPTASALSQARARLSGQPLEGVVRGHRC"
     gene            1534..2625
                     /locus_tag="VF788_06900"
     CDS             1534..2625
                     /locus_tag="VF788_06900"
                     /inference="COORDINATES: protein motif:HMM:NF033592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEX8933908.1"
                     /translation="MFEATAVKEVAGVVPGCEAFGLELTAFDGTCLDLAATDAVEKEF
                     AVPTGGRYPQARLVTLTGCGTRRMRAAALGSYATSEQKLFDQIVGALTPGTLNLADRN
                     FFSMPRWVTAAATGAQLAWRVKNGAHSLPAKVIAVLSDGSRLVRLRESNSMLSARRTA
                     TGDPGLPRLPEAIARLVEFDVLVTDEAGRTRTSQFRVLTTLTDHHACPARQIAAVYAE
                     RWQVELAYFRLKVSLRGAGVVLRGQTPALARQEIWGLLVVYNALCDLATCAAVELGID
                     PDEISFIAVLRRTRAHLDAEAHHCHCTRPRAGTDTIKALATAIGAHPRNRTGRQRTSP
                     RTASQRRTERTHQVTYTINIVTSNLPKED"
BASE COUNT          456 a          909 c          893 g          471 t
ORIGIN      
        1 gagtcttatt caaaacccca tgtaattgag aagaagaaca gtcctcgggc ggcgtcatac
       61 gcatcgcggt aggtgtggta cgggcggcgg tagtcggtgt ggaggatccg ccaggacttg
      121 aaatgcgcta tgagcatctc gacgggtgct cgcagtgccg agatgacggc gttgttctcc
      181 ttgtctcctc tgctgagctc tccccccggc ggtgtcttgc gtggggtgat gagcccacat
      241 ccctggtagc ccttgtcagc gatcccacca ccggaatgtt ggacgatgtc ggccaccggt
      301 gtctcggtga acgcggccgc gtcgtgggtc ctgccgggga gaggatcgga gatgtagacg
      361 gctccgccgt tgagcagact gaccagctgt gcgttgaacc ctgtcgtggc gtgcttgcgg
      421 ctccacagct cccggtgctc ggcgtaggac cagcacggcg tgatggtgcc gtctaccagg
      481 cagaccctgc cgttgaccat ctcgatggcc tccttggcgg tcggcacgaa ctcctccagc
      541 accgccttga cgaccggcac cagctggcag acgatccgcg acaccgtcga ctgggagaca
      601 cctcgtaggt cgcccaggaa ctcttctgtg ccgttctggc gcagatacat gcaggcgacc
      661 tccaccgccc ggtacagccc gcatgacttg ggccggccga ccttcttgtg ccacggaccg
      721 ggcaacgccg cctggacacg cagcacgagc tcctgcatct gggagagcat caggcctgta
      781 gtacgatggt atcgcaacgg tctttcctcg ctgatgtcga ttccggtgtg gtgaccgcat
      841 cgatatacca gttggaaaga ccgttgcctc gacgacacgc cgggcaacga ttagatgtga
      901 tcaaactagt tttgaataac gcactctata tcggcaaccg acgtttcgcc ttcatactgg
      961 aagagcagac cctctacacc actgccctta agttaaggac agtatgtggg cttctgccct
     1021 gctttcgatc ttcgttgtaa cgatcatgtc acggtccggc gacacgctca acgctgggat
     1081 caacgtagtg aagctcctgg taggacacgg gttgctacgg tccgacgtcc acaccaggag
     1141 cttcgttgtt gcagtctgcc atgtccgagg atgcgcggtg ggagtcgagc tcgggcagcg
     1201 cggtcacgcc gcaacggctg cgcgaggcgg tgctggccgg gccgggcgcg aaggtcggcg
     1261 acgaactgcg cgccggggtc ctgcagtggc tggcggaccc gaacgcgatc agggcggcgc
     1321 tggccgccga aggccacgtc gatgcccgcc ggcggatgct gcctggtgag gtgaccgtga
     1381 cggcggtgct ggggttgtgc ctgttcagcg gcgaaggcta cgactcggtg ctgtcccggg
     1441 tggtgccggc ggtggccccg ggcgcggctg tgccgacagc ctcagcgttg tcccaggccc
     1501 gggcccggct gagtgggcag ccccttgagg gtgttgttcg aggccaccgc tgttaaggag
     1561 gtggccgggg tggtgcctgg ctgtgaggcg ttcgggttgg agctgaccgc attcgacggc
     1621 acctgtttgg acttggccgc gaccgacgcc gtggagaagg agttcgctgt gcccaccggg
     1681 ggccgctacc cgcaggcccg gctggtcacc ttgaccggct gcgggacccg gcgcatgcgc
     1741 gcggccgcgc tgggctcgta cgccaccagc gagcagaagc tgttcgacca gatcgtcggc
     1801 gcactgacgc cgggcacgct gaacctggcc gacaggaact ttttcagcat gccccgctgg
     1861 gttaccgccg ccgcgaccgg cgcacagctg gcctggcggg tgaaaaacgg cgcccacagc
     1921 ctgccagcca aggtcatcgc ggtgctgtcc gacgggtcca ggctggtccg gctgcgcgag
     1981 tcgaacagca tgctgtcggc ccgccggacc gcgaccggcg acccgggtct gccccggctg
     2041 ccggaggcca tcgcccggct ggtcgagttc gacgtgctgg tcaccgacga ggccggcagg
     2101 acccgcacca gccagtttcg ggtgctgacc accctgaccg accaccacgc ctgcccggcc
     2161 cggcagatcg ccgccgtcta cgccgaacgc tggcaagtgg agctggccta ctttcgtctg
     2221 aaggtcagtc tccgcggcgc tggtgtggtc cttcgtggcc agacccccgc gctggcccgc
     2281 caggagatct ggggtctgct ggtcgtctac aacgccctgt gcgacctggc cacctgcgcc
     2341 gccgtcgagc tgggcatcga cccggacgag atctccttca tcgccgtgct gcggcgcacc
     2401 cgcgcccacc tcgacgccga ggcccaccac tgccattgca cacgcccccg tgccggcacc
     2461 gacaccatca aggccctggc caccgctatc ggcgcgcatc cccgcaaccg gaccggccgg
     2521 caacgcacca gcccccgaac agccagccag cgacgaaccg agcgaaccca ccaggtcaca
     2581 tacaccatca acatcgtcac gtcgaatcta cccaaagagg actgagaatt cttaacttaa
     2641 gggcagtggg tcaaagccgc gcagatccag gtacaggcat ccgtccggga aacgaccgcg
     2701 cacctgatgc gcccagtgca ccgccaacg
//
LOCUS       DASVXZ010000334         5987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1273098, whole genome shotgun sequence.
ACCESSION   DASVXZ010000334 DASVXZ010000000
VERSION     DASVXZ010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5987
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273098"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VF788_06905"
     CDS             complement(<1..228)
                     /locus_tag="VF788_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003414864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HEX8933909.1"
                     /translation="MLSVEDWAEIRRLYRSEGLPIKEIVRVLGVARNTVRAALASDGP
                     PRYERAPAGSIVDEVEPRIRELLAVYPTMPAT"
     gene            complement(404..1744)
                     /locus_tag="VF788_06910"
     CDS             complement(404..1744)
                     /locus_tag="VF788_06910"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005461176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEX8933910.1"
                     /translation="MSLLVVGLSHRSAPIPVLERAAVPLAETGKTVCELLKCEQLAEV
                     LLLSTCNRVEVYAVVTSFHGGLADITNVLARQSAIALDQLSDHLYVHYAEAGVQHLFS
                     VAAGLDSMVVGEPQILGQLRTAYASAEQAGTVGRALHEVVQRALRVGKRVHAETEIDA
                     AGASVVSEALADAAAALAHANRPGLAGRRAMVLGAGSMGTLVAAQLRRAGVGEIVLAN
                     RTKVSAQRLAALCQAEGTPARAVGLDDTAAVLATADLVVCCTGADGVVLGVEQVTDAR
                     RHRRTPLVVCDLGLPRDVEPAVGDLPGVTLLDLTSLVRRLEQSPTKSNAISAAHRLVA
                     QEVRSYLVAQRTAKVIPTVTALRKRAAEVVDAELLRLDDRLPTLSIDVRDELARTVRR
                     VVDKLLHTPTVRIKQLADTGCSEAYADALRELFELAPQAAAVIAATIPSSIARH"
     gene            complement(1744..2115)
                     /locus_tag="VF788_06915"
     CDS             complement(1744..2115)
                     /locus_tag="VF788_06915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933911.1"
                     /translation="MTVTRPSRDGELRTFPLIDYVFEHAQRWPDKSAVTDGETTATRI
                     YREQTATARRAAAGLAGRGVTTVTPTGVTPFTWLLKRHPASTTNLDTDDVDIEVRRAG
                     LVTKSQLLMFRIEPVNGIVVH"
     gene            2851..3462
                     /locus_tag="VF788_06920"
     CDS             2851..3462
                     /locus_tag="VF788_06920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933912.1"
                     /translation="MPTKIYLDGSTPSVRPSTPAEDTYTGVVQEKERAALKRFVAVDA
                     GEAVIHHWLMRYSLPALRISMGAVVFGFGILKYFPGMSPAQDLVLATTHLLSFGLVPA
                     VVPSGVAMALVATLECAIGVLLLSGRWLRLAVCLLTVWLTGIMSPVVLLPERLFAGPH
                     HMPTLEGQYVLKDAILLAAAMVIATAVRGATLTEGENHSPKKK"
     gene            complement(3528..>5987)
                     /locus_tag="VF788_06925"
     CDS             complement(3528..>5987)
                     /locus_tag="VF788_06925"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX8933913.1"
                     /translation="DTVPEARFYGILRGIREAAVGPLLLALDDLHWSDLDSLTAIHLI
                     CRRLTSLPVALVATARPWPEEALASAQNLAAQGLAEIQPLAPLSADAARTLLRSRVSE
                     QISAEVIDQTITLCAGNPLLVEQVALELCRSGRLPDGRISFTRFAGVGPAGRRYLQAA
                     SVLGTRFRVAVATEVAGLATPEAAAEIDGLFQGGLLCEADNGWSRFTHALIRQGVYEA
                     IAPPRRRDLHAASFRALVTSGAYPAEAAEHAMAAHLAGDPEAVATVARAGREALRAGA
                     VRAARQHLDNAMLLAGETASTELLFDLGAALVADGCSEEAVAVYERMLHLPELQTADR
                     VAVLRQLGQASFFAGQVERSSACYESAADLAEQDHPVLAVGALLDLACHHLTLSGPRV
                     ALPWANRAMDLAVARGALQASAQATWGTITYRSGNLNGLGAARAAAIRVEINPTSRAM
                     DRHTYQNPALNYAILAVQAELFADAEQLLTEILNSAERRCEPTTLVYAAFAWVDGLCR
                     LGRLNEANVISDRLIELAELLFPHWSPLANTYRALVLLEQGQLEQAALCCERLPERTN
                     RHDSLLHRTDGLALYVRGALARRQGDAEIACSLFAQLEQWAEHTGEVDPSHLPWAYDA
                     VAAYLACGRSADMRHVLDWVTQRAATLPSRWPKIVVAAGQAALAEHTGDLARADDYFT
                     QALDLHAELPMPLSRSQVLTDYGAFLTRAGETVRARPLLAEALRIAEACEAGWHASRA
                     RAEWRRAGGRTGTLKPDELSPQEASVSRLAQAGRSNRQIAQQLHLSIKTVETHLGHVY
                     QKLGIRSRWQLSERTVPNGEE"
BASE COUNT         1114 a         1983 c         1878 g         1012 t
ORIGIN      
        1 cgtggccggc atcgtcggat acaccgccaa caactcccgg atccgcggct ccacctcatc
       61 cacaatcgaa cccgccggcg cccgctcgta gcgcggcggc ccatccgaag ccaacgccgc
      121 ccgcaccgtg ttccgcgcca cccccaacac ccggacgatc tccttgatcg gcaacccctc
      181 cgaccgatac aacctgcgaa tctcagccca atcctccacc gacaacaccc cttcatccct
      241 cccccgctcg acaatgcgag ccaggctcac cggagaaggg gtcaaaattc ggatgccacg
      301 ccggggtcag ttttcacgtg ccgtcgacat cgaatcttga ctgtcgggcg cgttctcgga
      361 ttcgacctat cgcttggacg ttctgggggt gattcgtcac gcatcagtgc ctagcgatgg
      421 acgagggaat agtcgctgcg atgacggcgg cggcttgcgg ggccagttca aacaattctc
      481 gcagagcgtc ggcgtaggcc tcgctacaac cggtgtcggc aagctgcttg atccgcactg
      541 tgggggtgtg caagagtttg tccactaccc gccgcacggt gcgggccagc tcatcacgca
      601 cgtcgatgct gagtgtgggt agccggtcat ccagccgcag tagctccgcg tccactacct
      661 ccgcggcccg cttgcgcagt gcggtgactg tcgggatgac ctttgcggtg cgctgtgcga
      721 ccaggtagct gcgcacctcc tgcgcgacaa gacgatgggc cgcgctgatc gcgttggact
      781 tggtcgggct ttgttccagc cggcgcacca ggctggtcag atccagcagg gtcacgccgg
      841 gcaggtcacc caccgcgggc tcgacgtcgc ggggcaggcc taggtcacac actacgagcg
      901 gggtccgacg gtgcctgcgg gcgtcggtga cttgctcgac accgaggacc acgccgtcgg
      961 cgccagtgca gcagaccacc agatctgcgg tggccaatac cgcggccgtg tcatccaggc
     1021 caacggcccg ggcgggggtg ccctcggctt ggcacaacgc cgcgagtcgc tgcgcgctga
     1081 ccttggtgcg gttggccagg acgatttcgc ccaccccggc tcggcgcaac tgtgccgcga
     1141 cgagggtgcc cattgaacca gcgccgagca ccatcgctcg ccgaccggcc aggcctggcc
     1201 tgttggcatg ggcaagcgcc gccgcggcat cggcgagagc ttcggacacc accgacgcac
     1261 ccgcagcgtc gatttcggtc tcggcgtgca cccgtttgcc gacccgcagt gcccgctgca
     1321 ccacctcgtg cagagcgcgc cctacggtac ccgcttgctc ggcgctcgcg tacgcggtac
     1381 gcagctgacc aagaatctgc ggctcgccga cgaccatcga gtcgagcccg gcagccaccg
     1441 agaacaagtg ctgcacacca gcctccgcgt agtgcacgta aaggtggtcc gacagctggt
     1501 ccagcgcaat cgcggactgg cgcgccagca cattggtgat gtcggccaga ccgccatgaa
     1561 aggacgtcac caccgcgtaa acttcgaccc ggttgcaggt ggacagcaac agcacctctg
     1621 cgagctgctc acacttgagc agctcgcaga cagttttgcc ggtctcagcc aggggcaccg
     1681 cagcgcgctc cagaaccgga atcggtgcgc tgcgatgaga cagcccgaca accaacagac
     1741 tcatcagtgc accacgatcc cgttgaccgg ttcgatgcga aacatcagaa gctgcgactt
     1801 cgttacaagg cccgctctgc gcacttcgat atcgacgtca tcggtgtcga gattggtggt
     1861 cgacgcagga tgccgcttaa gcagccaggt gaacggggtt acaccggtgg gggtaaccgt
     1921 ggtcacacca cgcccggcca gcccagcggc ggctcgccgc gccgtggcag tctgctcccg
     1981 gtagatgcgt gtcgcagtgg tctcgccgtc ggtcaccgcc gacttgtccg gccagcgttg
     2041 cgcatgctcg aaaacataat cgatcagcgg gaaggtgcgg agttcaccgt cgcgcgaggg
     2101 cctggtaacc gtcatcatcc tctacttttc ttcgttgtga gctccggatt cgacacccgg
     2161 tgggtcaccg tgacccgagt gtgcgtgccg aaacacgacg gaaacgttgc aaccttgctg
     2221 acttgagctc cactacgacg aggctgaggg atgcagaata aataccgcag cgcggcggta
     2281 ccggccctcc gggtgaaaca cagacaaaca gttactgacg gacgctgatg cattaacgga
     2341 tcatcagctc agggccgtcc cggcttgtgc atcagctcag cctgcccgag cgcccgtctt
     2401 gatccacgac caccacgaga gctacctcgg ccgactacct ggcaacgaag caagctggcc
     2461 gctaatcgca ccaacactgg cgtcccggcc accgcgcgaa ggaccggcac tgtgccaagg
     2521 gatcaccacc tttgggtcct gcggggaccg atgcgcaccg actaccaccg accagcggcc
     2581 ttcgtacgaa tgttcgcgcc gcgccgatgg gctcaccacc caacctgccg atccatcgcc
     2641 gcgcccaccg tgtggtcttc ttattttcag ggattccccg gcaacaccat cgccagcacc
     2701 ttttaggtgc catctatgtt cagggctcgc cccgacgacg gcggctgaac gtccgccgac
     2761 actagatacc gatggacaac cgggcgtcat gatccgcgcc actcaccatc cagacaatta
     2821 tcggatctca tttcggcaag gaggatgagc atgccgacca aaatctatct cgacggatca
     2881 acaccatcgg tacgcccaag cacgcctgct gaagacacct acaccggggt tgtgcaggaa
     2941 aaggaacggg ccgcgctcaa gaggtttgtt gccgtcgatg ccggggaagc cgtaattcac
     3001 cattggctga tgcgttacag cttacctgca ttgcgcatta gcatgggagc ggtggtattc
     3061 gggttcggta ttctgaagta cttccccggg atgagtccgg cacaggacct cgtgctggcg
     3121 acgacgcatc tgctgagctt cggtctggtg cccgccgtgg tgcccagcgg ggtggcgatg
     3181 gcattggtcg cgaccctcga gtgcgccatc ggagtgttgc tactcagtgg acggtggcta
     3241 cggctggccg tgtgcctact gacagtttgg ctgaccggca tcatgtcacc ggtggtgctg
     3301 ctgccagagc ggctgtttgc cggtccgcac cacatgccca ccttggaagg ccagtatgtc
     3361 ttgaaagacg cgatcctgct ggccgccgcg atggtgatcg ctaccgcggt ccgcggtgct
     3421 accctcaccg agggtgaaaa tcattccccc aagaagaagt agtttgtgag ggcggcttat
     3481 ccgcccccac aaaccgtaaa caattgcgcg tccatcgcaa atttatgcta ttcttcaccg
     3541 ttcggtaccg tacgttcgga cagctgccag cgactacgga tgccgagctt ctgatagacg
     3601 tggccgaggt gggtttccac ggtcttgatg gagagatgga gttgctgggc gatctgccgg
     3661 tttgatctgc cggcctgggc tagccgggag acactggcct cctgggggct gagctcgtct
     3721 ggtttcaggg tgccggtgcg cccaccggct cgccgccact cggcccgggc gcggctggcg
     3781 tgccagcccg cttcgcaagc ttccgcgata cgcagcgcct cagcaagcaa cggacgcgcc
     3841 cgcacagtct caccggcacg ggtcaagaag gcgccgtagt cggtcagtac ctgacttcgg
     3901 ctgagcggca tcggtagctc ggcgtgcaag tcgagcgctt gcgtgaagta atcgtcggcc
     3961 cgtgccagat ctcccgtgtg ctcagcgagg gcagcctggc cagcggcgac aacgattttc
     4021 ggccaccggc tgggcaaggt cgccgcgcgc tgggtgaccc agtcgaggac atgccgcatg
     4081 tcggcggacc gaccacaggc gaggtaggcc gcgaccgcgt cgtaggccca cggcaggtgc
     4141 gagggatcga cctcgccggt atgctcagcc cactgctcga gctgggcgaa cagcgagcat
     4201 gcgatttcag cgtcgccttg gcgacgggcg agggccccac gcacatagag cgccaaacca
     4261 tccgtgcgat gcaggaggct gtcatggcgg ttggttctct ccggaagtcg ctcacaacac
     4321 agcgctgcct gctccagctg tccttgctcg agcaagacca acgcccggta ggtgttggcg
     4381 agcggagacc agtgtgggaa taacagctca gcgagctcga tgaggcggtc cgaaataacg
     4441 tttgcctcat tcagtcggcc gaggcgacaa aggccgtcaa cccacgcgaa cgcggcatac
     4501 acaagggtag tcggctcgca ccggcgttcc gcagagttga ggatttcggt gaggagctgc
     4561 tcggcgtcgg caaacagctc cgcctgcaca gcaaggatag cgtagttgag ggctggattt
     4621 tggtatgtgt gccggtccat ggcacgcgaa gtgggattga tttccacgcg tatggcagcg
     4681 gccctcgccg ccccgagacc attgaggttg ccgctccgat aggtgatcgt accccaggtg
     4741 gcttgcgctg aagcctgcaa tgcgccgcgt gccacggcca ggtccatggc acggtttgcc
     4801 cacggtagcg cgacccgagg accggacaag gtcagatggt gacaagccag atcaagcaga
     4861 gctccgacgg cgagcacggg atgatcctgt tcagcaagat ccgcagccga ctcgtaacaa
     4921 gccgacgagc gctccacctg gccggcgaag aagctggcct gtcctaattg acgcaatacc
     4981 gcgacacggt ccgcagtctg caactccggg aggtgcaaca tccgctcgta gacggccaca
     5041 gcctcctcgc tgcaaccatc ggcgaccagc gccgcaccca gatcgaagag cagttctgtg
     5101 gacgcggtct cacccgcgag cagcatcgca ttgtccagat gctggcgggc ggcgcggacc
     5161 gcgcccgccc gtaacgcctc gcgcccggct cgggccaccg tggccaccgc ctcggggtcg
     5221 ccggcgagat gagcggccat cgcgtgctcc gcggcctcgg ccggataggc gccggaggtg
     5281 acgagggcgc ggaacgaggc cgcatgcaga tcccggcgcc gcggaggtgc aatagcctcg
     5341 tacacgcctt gtctgatcag cgcgtgggtg aaccgcgacc atccgttgtc ggcctcgcac
     5401 agcaggccgc cttgaaacag gccatcgatt tcagcagcgg cctcgggagt ggccagcccg
     5461 gcgacctccg tcgccacggc aacccggaat cgggtaccga gcacgctcgc ggcctgcaga
     5521 tagcgccgtc cagccgggcc gaccccagcg aaacgagtga acgagatccg accatccggc
     5581 agccggccgc ttcggcatag ctcaagcgcg acctgttcga ccagcaacgg atttcccgcg
     5641 cacagcgtga tggtctgatc tatcacttcg gccgaaatct gctcactcac ccgggaacgt
     5701 agcaacgtgc gagcggcatc agcgctcagc ggagccagcg gctggatctc ggccagccct
     5761 tgagcggcaa gattctgtgc cgacgccaac gcctcctctg gccatggcct ggcagtggcg
     5821 acgagcgcca ctggcaggga ggtcaggcga cggcaaatca ggtgaatggc ggtcagcgag
     5881 tccagatccg accagtgcag gtcatcgagg gccagtaaga gcggaccaac cgccgcctcc
     5941 cgtatcccgc gcaggatgcc atagaaacgg gcctccggta cggtatc
//
LOCUS       DASVXZ010000335         1827 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_216017, whole genome shotgun sequence.
ACCESSION   DASVXZ010000335 DASVXZ010000000
VERSION     DASVXZ010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216017"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..706)
                     /locus_tag="VF788_06930"
     CDS             complement(83..706)
                     /locus_tag="VF788_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8933914.1"
                     /translation="MPNLSEGPSDADLVRRIGEADGAALSQLYQRFGRPCYSLARRIC
                     ADEGLAEDVVQEVFLTLWRDPSRFDPSRGGFATWLLTLIHHKAVDAVRRESTIRRRMV
                     AAPEAGEDWSPTPVPGADQAAMARVEAGQVRAALHRLPLEQRQVLALAYFDGHTQREI
                     AVLTGVPLGTVKSRMFTAVQRLRSLLADQLGPDDLVTEARMVREVNR"
     gene            1023..1448
                     /locus_tag="VF788_06935"
     CDS             1023..1448
                     /locus_tag="VF788_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsgA family sporulation/cell division regulator"
                     /protein_id="HEX8933915.1"
                     /translation="MRNDHVTLRSSAVFDLLAPRTPAVPVQVALRYDTRDPYAIVAAF
                     RTGRAGWVEWVFSRDLLADGLIAEAGDGDVRIRPGTGDPEIVVVELNSPSGHAVFEAS
                     AQRLAEFLDASYDIVLPGDETLWMNVDHALGRMIANELP"
     gene            1538..1610
                     /locus_tag="VF788_06940"
     tRNA            1538..1610
                     /locus_tag="VF788_06940"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1571..1573,aa:Gly,seq:gcc)
     gene            1710..1781
                     /locus_tag="VF788_06945"
     tRNA            1710..1781
                     /locus_tag="VF788_06945"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1743..1745,aa:Cys,seq:gca)
BASE COUNT          308 a          609 c          578 g          332 t
ORIGIN      
        1 tcctcggcgg gctccagaga gtgtaacgcc cacccgaccg ccaactcgcg gtgcaggcga
       61 tgcgcaacgt cgcgctggtc gttcatcggt tcacttccct caccatgcga gcctcagtga
      121 ccaggtcgtc cggtcccaat tgatcggcca gcagcgagcg aagccgttgt acagcggtga
      181 acatgcgtga cttcaccgtg cccagcggca ctccagtcaa cactgcgatc tcacgttgag
      241 tatgtccgtc gaaataggcc agcgcgagca cctgccgctg ctccagcggc aatcgatgca
      301 gcgccgcgcg cacctgaccg gcctcgaccc gtgccattgc cgcctggtcg gcgcccggta
      361 ccggcgttgg cgaccagtcc tcgcctgcct ctggggcagc gaccatgcgc cggcggatag
      421 tgctttcccg acgcaccgca tccaccgctt tgtggtggat tagcgtgagc agccatgtgg
      481 cgaaaccccc ccgcgacggg tcgaaccggg atgggtcacg ccacagcgtc aggaacacct
      541 cctgcaccac atcctcagcc agcccctcat ctgcacagat ccggcgggcc agtgagtagc
      601 agggccggcc gaagcgctga tagagctgag acagtgcagc accgtcggct tccccgatgc
      661 gtcgcacgag atcggcgtcg gaaggtccct cggacagatt gggcaccggt gctgccggtc
      721 ctggagtgcc ttgccatcgg tcaggccgcg gggcgcttga tcgagcctca tcggccacca
      781 gacagatcct cacgtcgtac ctacgccggg catcacctgc cggttcaggc tagttgcccc
      841 agagtattcc cgcagacggc ggcaggcagc caccgcgagc gacgaccctc ccgcttcggt
      901 gagcgtttct gccccgtccg ggtggtctgc cttaggcatc cgggcgtagc tcaaccgttt
      961 ccgcgtcaca acagccaaag tcaatcgttt caggtccgaa ggcgcagaaa ggggcgataa
     1021 caatgcgtaa cgaccatgtg accctgcgtt cgtcagcggt cttcgatctg ttggcgccac
     1081 gcactcctgc ggttccggta caggttgctc tgcgttacga cactcgtgac ccatatgcaa
     1141 tcgttgccgc tttccgcacc gggcgggccg gctgggtcga gtgggtgttc tcccgcgatc
     1201 tcctcgccga cggcctgatc gccgaagcag gagacggtga tgtgcgcatc cggccaggca
     1261 ccggtgatcc ggagatcgtc gtggtggagc tcaactcccc ctccggtcac gccgtcttcg
     1321 aggccagcgc tcagcggcta gccgagtttc tcgatgccag ctacgacatc gtgctgcccg
     1381 gagacgaaac tttgtggatg aacgttgacc acgcgctcgg ccggatgatc gccaacgaac
     1441 taccctgagt ccgggggtgg cttgatcctg acttcccgag tcggctagag tcctgtcacg
     1501 catccgggcg ggggcaagtg catccagtcg ggagcatgcg gacgtagcgc agctggtagc
     1561 gcatcacctt gccaaggtga gggtcgcggg ttcgaatccc gtcgtccgct ctggggcgtc
     1621 cccccacgtc ggtcggccct ccggggcgga tcttcggggc gacgagcatt agaccgtcgg
     1681 ccgtgaaaat tctttcggtt acgagacgcg gcggagtggc cgagtggctt aggcaagggc
     1741 ctgcaaagcc ctgtacgcgg gttcgattcc cgcctccgcc tcgggcgatt agctcagtgg
     1801 gagagcgcta ccttgacacg gtagagg
//
LOCUS       DASVXZ010000336         5392 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_395075, whole genome shotgun sequence.
ACCESSION   DASVXZ010000336 DASVXZ010000000
VERSION     DASVXZ010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5392
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395075"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VF788_06950"
     CDS             complement(<1..732)
                     /locus_tag="VF788_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933916.1"
                     /translation="MATEKHEHDHDHDHALIDDLARIEALRTEGVHRAGEHEGPFSLH
                     VLGLGGTGAAVITTLLRERPEGLLADPTTRFSALAVDIGDEDLGPVREAGADLPPERS
                     HIRTVALPIPGNAELRTSLNRYREFLKMEFPRYYWNPNYEPWLPADVELPGPGEHFPR
                     ALAKAVYGSEYYQNREITQALDAFAESVLASQATPLVVVVFSLAGGVGSGIVVEIARH
                     LSTIKLGRRPWVVGVGVLPCEGDPPE"
     gene            complement(817..987)
                     /locus_tag="VF788_06955"
     CDS             complement(817..987)
                     /locus_tag="VF788_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933917.1"
                     /translation="MSEPAGQSPAKSPPDQGERDEQRQEHLDALGKRADDLPDMADPK
                     QWREAPKEGGGA"
     gene            complement(1102..2217)
                     /locus_tag="VF788_06960"
     CDS             complement(1102..2217)
                     /locus_tag="VF788_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009081400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic amidase"
                     /protein_id="HEX8933918.1"
                     /translation="MRHGDISSSNDAVGVAVVNYKMPRLHTREDVRDNCMKIADMVVG
                     IKQGLPGMDLIVFPEYSTHGIMYDRDEMFNTASRIPGEETKIFAEACRAAKTWGVFSL
                     TGEQHEEHPRKNPYNTLILMNAEGEIVQRYRKILPWVPIEGWYPGDKTYVVDGPKGLK
                     VSLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYPAKDQQIIVAKAMAWMNNCYVAVA
                     NAAGFDGVYSYFGHSSIIGFDGRTLGETGEEEYGIQYAELSTSLIRDARANWQSQNQM
                     FKLLHRGYTGVLASGDGDKGVAECPFDFYRTWVTDPAAAQRQVEAFTRSTIGTAESPI
                     PGLPNQNSNGARGDVAGGRLPDEPSDRQADQPSPSRT"
     gene            complement(2337..3404)
                     /locus_tag="VF788_06965"
     CDS             complement(2337..3404)
                     /locus_tag="VF788_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX8933919.1"
                     /translation="MPTHRGHRGTFTIGLVIPIQGPAGIFGPSCELCAQLAVEETNAG
                     GGVLGRELRLLTVDGGASPVRVADEVDRLISAGRVHAIVGWHISAVREVLAPRIAQRV
                     PYVYTALYEGGERRPGVFLTGETPQRQILPAMRWMAREIGVRRWCIVGNDYVWPRRSA
                     AVSRGFARLCGAEVRDEIFVGLGAHDFRKAIGRLERSECEGVLMFLVGEDAVHFNRQF
                     ARAELDRRCVRLSPLMDENMLLATGAANAGGVFVAAGYFECLPTAESLDFNARYTRRF
                     GAEAPMLNSLGESCYEGLLLLTELVRRARSSDVRQICAVAQVARYGGPRGELGMRDAH
                     VEQRIYLARAAGLDFDIVSSL"
     gene            3578..4003
                     /locus_tag="VF788_06970"
     CDS             3578..4003
                     /locus_tag="VF788_06970"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8933920.1"
                     /translation="MKADSALGLAHLLSQVESRVTRRLVAVLRAHDCELAEWRVLRLL
                     SDRHGRPMSEIKDFVLLPGPTLTKLIDRMVANNLVYRRGDLEDRRRVLVLLAPRGVTK
                     YEAIRAAVDSDQMELAERIGDEQLEELTRVLSHVAEALR"
     gene            complement(3974..4363)
                     /locus_tag="VF788_06975"
     CDS             complement(3974..4363)
                     /locus_tag="VF788_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019813901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX8933921.1"
                     /translation="MHLVGDNRGGRRVIDEDHRVCDAIAAVSDQLALERWAQVFALLG
                     DPSRLALLVSIRRAGPICVSDLAAATALKEATVSQALRLLRSRGAVVADRDGRMVRYA
                     LADEHLAALVDRVAEGDGSPQGLRDVR"
     gene            complement(4347..5225)
                     /locus_tag="VF788_06980"
     CDS             complement(4347..5225)
                     /locus_tag="VF788_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8933922.1"
                     /translation="MSGHHDPTSVPIVSVHNLHFSYEPQRPVLVDAGLALYAGHRLAV
                     LGPNGGGKTTLFRLIVGALKPDAGEIRVDGTPLQRTRKGLLELRRQVQLVLQDPDDQL
                     FAASVYQDVSFGPVNLGLPPPEVRARVGVALAALGITELADRPTHLLSFGQKKRTAIA
                     GAVAMRPRVLVLDEPTAGLDPAGVEALLATLGDLHAAGTTLVISTHDVDLAYRWSDEV
                     AVVADGTIHRAPVDVALADRDLLTRARLGPAWAPAVHALLEGTGGHTGARPQTAAELY
                     ALLAAPDQDGSHASGW"
BASE COUNT          911 a         1829 c         1729 g          923 t
ORIGIN      
        1 ctcgggaggg tcaccctcgc agggcagcac gccaacgccg acgacccacg gtcggcgccc
       61 gagcttgatg gtggacaggt gccgggcgat ctccacgacg atgccgctgc cgaccccgcc
      121 cgccaggctg aagaccacca cgaccagcgg ggtggcttgg ctcgccagca cactctcggc
      181 aaaggcgtcc aatgcctggg tgatctcgcg gttctggtag tactccgagc cgtacaccgc
      241 tttggcgagc gcccgcggga agtgctcacc cgggccgggc agctccacgt ccgcgggcag
      301 ccacggctcg tagttggggt tccagtaata ccgggggaac tccattttca agaactcgcg
      361 gtagcggttg aggctggtcc gcaactcggc gttgccgggg atgggcaacg ccacggtccg
      421 gatgtggctg cgctccggtg ggaggtccgc cccggcctcg cggaccgggc ccaggtcctc
      481 gtcgccgatg tccactgcca gtgctgagaa gcgggtggtg gggtcggcga gaaggccctc
      541 cggtcgctcg cgcagcaagg tcgtgatgac cgccgccccg gtgccaccca agccgaggac
      601 gtgcaatgag aacgggcctt catgctcacc ggcgcgatgg acgccctcgg tgcgcagcgc
      661 ttcgatccgg gccagatcgt caatcaacgc atggtcatga tcgtggtcgt gttcatgttt
      721 ttcggtagcc atgcctggtt tcttctttct tacgatggtc gatctggcag ggcttacact
      781 ccccggccgt tgctatggac agctcgcctg gagaattcag gcgcctccgc cctctttagg
      841 cgcctcccgc cactgcttcg ggtcagccat gtcaggcaaa tcatcggccc tttttcctag
      901 ggcgtccaaa tgctcctgac gctgctcatc gcgctcaccc tgatcaggag gactcttggc
      961 tggtgactgc ccggcgggct cactcatgat gctccttctc gatgcataga gttattggtg
     1021 tcgggggccg acaatcgacg tgacattcgc gcactgccta aacggcgtca cgcaccggag
     1081 cagcgcttcg gccggttggg ctcaggtccg ggacggtgac ggctggtcgg cctgccggtc
     1141 ggatggctca tcggggaggc gaccgccggc aacgtcgccc cgtgcaccgt tcgagttctg
     1201 attgggcagt cccgggatgg ggctctccgc ggtcccgatc gtcgagcggg tgaaggcttc
     1261 cacctgtcgc tgagctgcgg ctgggtcggt cacccaggtg cgatagaagt cgaatgggca
     1321 ctccgccacg cccttgtccc cgtctcctga ggccagcaca ccggtgtaac cgcggtgcag
     1381 cagcttgaac atctgattct gcgactgcca gttggcccgc gcgtcccgaa tcaacgacgt
     1441 ggacagctca gcgtattgga tcccgtactc ctcctcgccg gtctcaccca acgtgcgacc
     1501 gtcgaacccg atgatcgagg aatggccgaa gtacgagtac acgccgtcga acccggctgc
     1561 attggccacc gcgacatagc agttgttcat ccaggccatt gccttggcaa cgatgatctg
     1621 ctgatccttg gcgggataca tatagccctg gcagcgcact atgagctcgg cgcctttcat
     1681 cgcgcagtct cgccagatct cgggatagtt accatcgtcg caaatgatga ggctgacctt
     1741 cagccccttg ggtccatcga cgacgtaggt cttgtccccg ggataccacc cctcgatcgg
     1801 gacccagggc aggatcttgc ggtagcgctg cacgatctcg ccctcggcgt tcatgaggat
     1861 caaggtgttg tacgggttct tgcgcgggtg ctcctcgtgt tgctcaccgg tcagtgaaaa
     1921 gacaccccac gtcttcgccg cacgacacgc ctcggcgaag atcttcgttt cctctcccgg
     1981 gatgcgcgag gccgtgttga acatctcatc ccggtcgtac atgatcccgt gggtgctgta
     2041 ctccgggaag acgatcagat ccattcccgg tagaccctgc ttgatcccga cgaccatgtc
     2101 cgcgatcttc atgcagttgt ctctgacgtc ctcgcgggtg tgcaggcgag gcatcttgta
     2161 gttcacgacc gcgacgccca cggcgtcgtt gctgctgctg atgtctccat gccgcatggg
     2221 ctaactcctc cgcagcgctg tagtggacca gccaccatcg atcagcaatt tgttccgtta
     2281 gaaactattc tgcgaggaac caacgctgtc aagaggctcc tggcccggcg cgcacgtcag
     2341 agtgacgaga cgatgtcgaa gtcgagcccg gccgcacgag ccaggtagat gcgctgctcg
     2401 acgtgggcgt ctcgcatccc cagttcaccg cgcggcccgc catagcgggc cacctgcgcc
     2461 acggcgcaga tctgccgaac gtcggaggaa cgagcccgcc ggaccagctc ggtaagcagc
     2521 agcaacccct cgtagcacga ttcgccgagg ctgttgagca tcggagcctc cgcaccgaaa
     2581 cgccgggtat agcgggcgtt gaagtcgaga ctctccgcag tgggcaggca ctcgaagtaa
     2641 cccgccgcca cgaacacccc tcccgcgttg gcggcccccg tggcgagcaa catgttctcg
     2701 tccatcaggg ggctcaggcg cacgcatcgc cggtccagct cagcgcgcgc gaattgccgg
     2761 ttgaagtgca ccgcgtcctc accgacgagg aacatgagca cgccctcgca ttcgctgcgt
     2821 tcgagccgcc cgatggcctt ccggaaatcg tgggcaccca acccgacgaa gatctcgtca
     2881 cggacctcgg caccgcagag cctggcgaaa ccccggctca ccgctgctga gcggcggggc
     2941 cagacatagt cattaccgac gatgcaccac cgccgcacac ctatctcgcg cgccatccag
     3001 cgcatagccg gcaggatctg gcgctgcggc gtctcaccgg tcagaaagac accgggacgg
     3061 cgctccccgc cctcgtacag tgcggtgtac acgtagggca cccgctgggc aatgcggggc
     3121 gccagtacct ctcgcaccgc agagatgtgc caacccacga tcgcatgcac ccggccggcc
     3181 gagatcagcc gatcgacctc gtcagcgacc cggacggggg aagcaccacc gtcgacggtc
     3241 agcaggcgca gctcacgacc gagcacaccg ccaccggcat tggtctcttc caccgcgagc
     3301 tgagcgcaca gctcgcagga cgggccaaag atcccggcgg ggccctggat agggatcacc
     3361 aggccaatgg tgaacgttcc tcgatgccct cgatgcgtcg gcattgcagt ccctcgcgtc
     3421 gggaccgcct acatcgccag atcctccgat ggcgccccgt cgtccgacat ggtaggcccg
     3481 ccctggtcgt tcagacaccc cgtattcgga taccccctgc cactccgtgt tattttctgg
     3541 ttaatcagtt tctctcgaca tctcttggga gtcgctcgtg aaagcagact ccgcgctggg
     3601 cttggcccat ctgctcagcc aagtggagag tcgcgtgact cggcgcttgg tggccgtgct
     3661 gcgcgcgcac gactgcgaac ttgcggagtg gcgggtactg cgcttgctgt cagaccgcca
     3721 cggccggccg atgagcgaga tcaaggactt cgtcctgcta cccggcccca cactcaccaa
     3781 gttgatcgac cgcatggtcg ccaacaacct cgtttaccgg cgcggtgacc tcgaggaccg
     3841 ccgccgcgtg ctggtgctcc tcgccccgcg cggtgtcacg aagtacgaag ccatccgtgc
     3901 ggctgtcgac tccgatcaga tggaactggc cgagcgcatc ggcgacgagc agctcgagga
     3961 actgacccgc gtgctatcgc acgtcgcgga ggccctgcgg tgagccgtca ccctcggcca
     4021 cccggtcgac cagcgccgcg aggtgctcgt cggcgagcgc gtagcgcacc atccgaccat
     4081 cccgatcagc cacgaccgca ccgcggctgc gcagcagccg gagagcctgc gacacggtcg
     4141 cctccttcag cgcagtcgcc gccgcgaggt ccgagacaca gatcggaccg gcgcggcgga
     4201 tggatacgag caaggccagc ctgctggggt caccgagcag ggcgaacacc tgagcccagc
     4261 gttcgagcgc gagttggtca ctcactgctg caatggcgtc gcagacccgg tggtcctcat
     4321 cgatgacccg gcgacctccc cggttatcac caaccagatg catggcttcc atcctggtcc
     4381 ggtgcggcga gcaaggcata gagctcggcg gcagtctgcg ggcgcgcgcc ggtgtgtccg
     4441 ccggtgccct cgagcagggc atgcacggcg ggtgcccagg cggggcccag ccgggcccgg
     4501 gtgagcaggt cccgatcggc gagcgcgaca tcaacggggg cccggtggat tgtgccgtcg
     4561 gcgaccacgg ccacctcatc ggaccatcgg taggcgagat cgacgtcgtg agtcgagatc
     4621 accagcgtgg tccccgccgc gtgcagatcc cccaacgtgg ccagcaacgc ttcgacgccg
     4681 gccggatcga ggcctgcggt gggttcgtcg agcacgagca cgcggggccg catcgcgacc
     4741 gcgcccgcga tcgcggtgcg tttcttctga ccgaaggaga gcaggtgagt ggggcgatcg
     4801 gcgagctcgg tgatgccgag cgcggcgagc gcgaccccga cccgggctcg tacctcgggt
     4861 gggggcaggc ccagattcac cggcccgaag gacacgtcct ggtagacgct ggcagcgaaa
     4921 agctgatcat cgggatcttg cagaacgagc tggacctgcc ggcgcaactc gagcaggccc
     4981 ttgcgggtac gttgcagcgg cgtgccgtcg acgcgtatct ctccggcatc tggtttcaac
     5041 gcgcccacga tcagccggaa cagcgtcgtc ttcccgccac cgttggggcc gagtacggcg
     5101 agccggtgcc cggcatacag ggcgagtccg gcgtcgacga gcaccgggcg ctgtggctcg
     5161 tagctgaagt gcaggttgtg cactgagacg atgggcaccg acgtcggatc gtggtgaccg
     5221 ctcatcgccg ctcgctcatc gcagctccag ccggatcgtc agggtcgccg cgaccacggc
     5281 gagcagcacc gtcgtggtga gcaggacgaa ggtccgggag actgggcggg actcgatgtc
     5341 cacgcgcagc gacccggtgt agccacgcag cgcgagaccc tcttccatcc gg
//
LOCUS       DASVXZ010000337         4244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_36367, whole genome shotgun sequence.
ACCESSION   DASVXZ010000337 DASVXZ010000000
VERSION     DASVXZ010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36367"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1878)
                     /gene="valS"
                     /locus_tag="VF788_06985"
     CDS             complement(<1..1878)
                     /gene="valS"
                     /locus_tag="VF788_06985"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX8933923.1"
                     /translation="MASPLSTLDNLEARWGERWERDGTYRFDRTRVRAEIYSIDTPPP
                     TVSGSLHVGHVFSYTHTDAIARFQRMRGREVFYPMGWDDNGLPTERRVENYFGVRCDP
                     SVAYQEDFVPPAKAPSKRQDYVPVSRRNFIELCERLTETDEKAFETLWRLLGLSVDWS
                     LTYSTVSQRSQRVSQRAFLHNLARGEAYSSEAPCLWDTTFQTAVAQAELEDRDRPGAY
                     HDLRFHGAAGRDDVVISTTRPELLVSCVALVAHPDDERYQPLFGSTVSTPVFGVEVPV
                     LAHHRAEPDKGTGIAMVCTFGDLADVMWWRELELDTRAVIGKNGRLSAETLSWLTTEP
                     AREAYARLAGKSTFGAQQAMVELLRESGDLLGEPRPITHPVKFYEKGERPLEIVTTRQ
                     WYIRNGGRSPELRAELIARGRELSWHPEHMRHRYENWVEGLNGDWLVSRQRFFGVPIP
                     LWYRLDEQGRPDYEHPIVPDEATLPIDPQSHVAPGYTAQQRDQPGGFTGEPDIMDTWA
                     TSSLTPQIACGWEDDPDLFARTFPMDLRPQGHDIIRTWLFSTVVRSHLEHGSLPWSDA
                     ALSGWILDPDRKKMSKSKGNVVTPLPLLEEYGADGVRYWASRGAPGTDTAADFGQMKI
                     GR"
     gene            2150..2464
                     /locus_tag="VF788_06990"
     CDS             2150..2464
                     /locus_tag="VF788_06990"
                     /inference="COORDINATES: protein motif:HMM:TIGR03930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion target"
                     /protein_id="HEX8933924.1"
                     /translation="MAGQFGAQFEQMQAAANHVAEVNQSVQGQLSALRNQLAPLAGAW
                     KGQAATAFGVLMERWDNDARNLNEALDSIGEQIRGSGSTYAQADEAENQTYTRISQAL
                     GS"
     gene            2524..2811
                     /locus_tag="VF788_06995"
     CDS             2524..2811
                     /locus_tag="VF788_06995"
                     /inference="COORDINATES: protein motif:HMM:TIGR03930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion target"
                     /protein_id="HEX8933925.1"
                     /translation="MSEILVTFGELESARSSIQTTWTNINREMEDLKRYLQPMVETWT
                     GDASSAYQAHQAKWDRSAADLNQVLNQIGVALGTSNENYQAGESANRARWS"
     gene            3029..3472
                     /gene="rplM"
                     /locus_tag="VF788_07000"
     CDS             3029..3472
                     /gene="rplM"
                     /locus_tag="VF788_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEX8933926.1"
                     /translation="MRTYNPKPGEVERAWHVIDATDVVLGRLASQAAVLLRGKHKPTY
                     APHVDTGDFVVIVNAGKVALTGNKGDRSFVYRHSGHPGGLKRRSFTEMLATRPERLIE
                     KSIKGMLPKNTLGRAMARKLKVYASAEHPHAAQKPQPFQITQVAQ"
     gene            3469..4047
                     /gene="rpsI"
                     /locus_tag="VF788_07005"
     CDS             3469..4047
                     /gene="rpsI"
                     /locus_tag="VF788_07005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEX8933927.1"
                     /translation="MTAPEPVSSAEPVNTDHVNTASEDLNEAVTTPQTSQPDTGPDTS
                     AVAPAAAAPAPLVSVMPVPSGQATQAVGRRKEAVVRVRLVPGTGVFRLNGTTLERYFP
                     NKVHQQLIREPLLTVNKPESYDVLGNLSGGGTSGQAGALRLAIARALVEINIDDRPAL
                     KKAGFLTRDARAKERKKYGLKKARKAPQYSKR"
     gene            4086..>4244
                     /locus_tag="VF788_07010"
     CDS             4086..>4244
                     /locus_tag="VF788_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005443346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEX8933928.1"
                     /translation="MPRLFGTDGVRGLANSELTPELALAVSSAAARVLADRGLGHRPV
                     AIVGRDPRA"
BASE COUNT          747 a         1357 c         1453 g          687 t
ORIGIN      
        1 gcggccgatc ttcatctggc cgaagtcggc ggccgtgtcg gtgcccggcg cgccgcgcga
       61 cgcccagtag cgcacgccgt cggcgccgta ctcctccagc aacggcagcg gcgtgaccac
      121 gttgcccttc gacttcgaca tcttcttgcg gtcggggtcg aggatccatc cggagagggc
      181 ggcgtccgac cacgggagcg acccgtgctc gaggtgcgat cgcaccacgg tggagaacag
      241 ccaggtgcgg atgatgtcgt ggccctgcgg gcgcagatcc atcgggaagg ttcgcgcaaa
      301 caggtcgggg tcatcttccc agccgcaggc gatctggggg gtcagcgacg acgtcgccca
      361 agtgtccatg atgtctggct caccggtgaa accgccgggc tggtcccgtt gctgcgcggt
      421 gtagcccggt gcaacgtggg actgggggtc gatgggcagc gtggcttcgt ccggcacgat
      481 cgggtgctcg taatcgggac ggccctgctc gtcgagccgg taccacagcg ggatcggcac
      541 gccgaagaac cgttggcggg agaccagcca gtcaccattg agcccctcca cccagttctc
      601 gtagcggtgc cgcatgtgct ccgggtgcca gctcagctcg cggccccggg cgatcagctc
      661 ggcccgcagt tccggggagc ggccgccgtt gcggatgtac cactgcctgg ttgtgacgat
      721 ctccagcggc cgttcgccct tctcgtagaa cttgaccggg tgggtgatcg gccgtggttc
      781 gccgagcaga tccccggact cgcgcagcag ctcgaccatc gcctgttgag cgccaaaggt
      841 ggacttgccg gccagccggg cgtaggcctc ccgggccggt tcggtcgtca accaggagag
      901 cgtttccgcg ctaagccggc cgttcttacc gatcacggca cgggtgtcca actcaagctc
      961 ccgccaccac atcacatctg cgaggtcccc gaaggtgcag accatggcga tgccggtgcc
     1021 cttgtccggc tccgcccggt ggtgcgccag caccgggacc tccacgccga acaccggggt
     1081 ggacacggtc gatccgaaca gcggttggta acgctcatcg tcgggatgcg caacgagtgc
     1141 gacgcaggac accagcagct cgggtctcgt ggtagagatg acgacgtcat cgcgcccggc
     1201 agcgccgtgg aagcgcaggt cgtgataggc gcctgggcgg tctcggtcct ccaactcggc
     1261 ctgtgccacc gctgtctgga aggtggtgtc ccacaggcag ggtgcctcgg acgagtacgc
     1321 ctcaccgcgg gccaggttgt ggagaaatgc ccgttggctg acccgttggg agcgctgcga
     1381 cacggtggag tacgtcagcg accagtccac cgacagaccc agcaggcgcc acagcgtctc
     1441 gaaggctttc tcgtcggtct cggtcagacg ctcgcagagc tcgatgaagt tgcggcggct
     1501 gaccgggaca tagtcctgtc gcttcgacgg ggctttggcg ggtgggacga agtcctcctg
     1561 ataggcgacc gaggggtcgc agcgcacacc gaaatagttc tccactcgac gctcggtggg
     1621 caacccgttg tcgtcccagc ccatcggata gaacacctcg cggccacgca tccgctgaaa
     1681 ccgtgcgatc gcgtcggtat gcgtgtagct gaagacatgg cccacatgca gcgagcccga
     1741 cacggtcggg ggcggcgtat caatcgagta aatctcggcg cgaacgcgag tgcggtcgaa
     1801 gcggtaggta ccgtcgcgtt cccaccgctc gccccagcgg gcttcgagat tgtcgagggt
     1861 tgatagcggg ctggccatgc cttgactcta tcggccccgc ccaggacgga tttctcgtgg
     1921 cgcggggtgt gcctatgccg acatgaggga ggcgagccgg gtgaggttgg aggtggcgtg
     1981 gctgggggga actgcgactg gcggtcgtcg aaggcgcatt cgcgcttgca acgttctgcg
     2041 accggatgct cacgtcgtgg aaccggctct ggcagtgtga cgtcccctgg tggtcacgat
     2101 cggcgaacca tcctcaccaa ccttctctga cccaaggaga tcaccgcaga tggcagggca
     2161 attcggtgcg cagtttgagc agatgcaggc ggcggcgaat cacgttgctg aggtgaacca
     2221 gagcgtccag gggcagctct cggccctacg caatcagctg gcaccgctgg cgggggcgtg
     2281 gaagggccag gccgcgaccg ccttcggagt actgatggaa cggtgggaca acgacgcgcg
     2341 caatctcaac gaggcgctcg acagcatcgg tgagcagatc cggggttcgg gcagcaccta
     2401 cgcgcaggct gacgaagccg agaaccagac ctacacgcgg atcagccagg cgctgggcag
     2461 ctgagctcgt cagacccggt agacgtcaga cccggcaaac acagacacga aggagacaca
     2521 ggcgtgagcg agatcctggt cacgttcggc gagctggaaa gcgcgcggag ctccatccag
     2581 acgacctgga cgaatatcaa ccgggagatg gaggacctca agaggtacct gcagccgatg
     2641 gtggagacct ggaccggaga cgcgtccagc gcctaccagg cgcaccaagc gaagtgggat
     2701 cgatcggcgg cggatctgaa ccaggtgctg aaccagattg gggtcgcact ggggacgtcg
     2761 aacgagaact accaggcggg agaatcagcg aaccgggcgc gttggtcgta gccgccaacg
     2821 ggtccggggt cgccgctgga ggttgtggcc gcgtcagcgg cgaccccgtt ttgaccttct
     2881 tgggccccga ccggtatcgt ttcccgctgc tgtgcggatg tgcgcggcgc tcagctgacg
     2941 actgtgttta gttggctctg tgctccaggc gcaccggcac cgccgaagac gttcgatgac
     3001 cctgcgaacc gtgataatga ggtagtccgt gcgcacgtac aaccccaagc caggcgaggt
     3061 cgagcgtgcc tggcatgtca tcgatgccac ggatgtggtg ctaggccggc ttgccagcca
     3121 ggccgccgtg ctgctgcgcg gcaagcacaa accgacctac gctccgcatg ttgacaccgg
     3181 cgacttcgtg gtgatcgtca acgccggcaa ggtggcgttg acgggtaaca aaggtgatcg
     3241 gagctttgtc taccggcaca gcggtcaccc gggcggtctc aagcggcgct cgttcaccga
     3301 gatgctcgcc actcgccccg agcgattgat cgagaagtcc atcaagggca tgctcccgaa
     3361 gaacacactg ggccgggcga tggcacgtaa gctgaaggtt tacgcgagcg ccgagcatcc
     3421 gcacgcggcg cagaaaccgc agccattcca gatcacccag gttgcccaat gaccgccccc
     3481 gagccggtga gctccgccga gcccgtgaac actgaccacg tgaacaccgc cagtgaggac
     3541 ctgaacgagg ccgtgaccac tccccagaca tcgcaacccg acaccggccc cgacaccagc
     3601 gcagtcgcgc cggctgctgc cgccccggcc ccactcgttt cggtgatgcc ggtacccagc
     3661 ggtcaggcga cacaggccgt tggtcgtcgt aaggaggccg tggtgcgggt gcgcctggtc
     3721 ccgggcaccg gtgtattccg gctcaacggc acgaccttgg agcggtactt tccgaacaag
     3781 gtgcaccagc agctgattcg ggaacccctg ctgaccgtca acaaaccaga gtcctacgac
     3841 gttttgggca acctttccgg tggcggcacc tcgggccagg ccggcgcgct gcggctggcc
     3901 attgcgcggg cgctggtgga gatcaacatc gatgaccgtc cggcgctgaa gaaggccggc
     3961 ttcctcaccc gggacgcccg ggcgaaggag cgcaagaagt acgggttgaa gaaggcgcgc
     4021 aaggctcctc agtactcgaa gcgttaatcc tgccggcccc ggtattggtc gacgcgtcct
     4081 catcgatgcc ccgcctgttc ggcaccgacg gggtacgtgg gctggccaac tccgagctca
     4141 cgcccgagct ggccctggcc gtgtcgagtg cggcggcccg ggtgctcgcc gatcgtggtc
     4201 tgggacaccg accggttgcc atcgtgggtc gggatccccg ggcc
//
LOCUS       DASVXZ010000338         2593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_734878, whole genome shotgun sequence.
ACCESSION   DASVXZ010000338 DASVXZ010000000
VERSION     DASVXZ010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_734878"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..898
                     /locus_tag="VF788_07015"
     CDS             185..898
                     /locus_tag="VF788_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011084489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HEX8933929.1"
                     /translation="MTVGAPSSKGFRFPAEIISHCVWLYHRFPLSFREVEEMMLERGS
                     VVSHETIRQWCAKFGQTYANELRRRRARPGDKWHVDEVFLTINGQRRSLWRAVDQQGT
                     VLEILVPSRRDAKAATRFFRKLLTGLRYVPRVLITDKLASYGAARRRVLRSVEHRQST
                     YLNNRAENSHQPTRARERAMKRFASARHAQRFLSAFSGISPHFRPGRHRLSAQEYRRE
                     MTDRFTTWNQVTGTATAAA"
     gene            complement(991..2211)
                     /locus_tag="VF788_07020"
     CDS             complement(991..2211)
                     /locus_tag="VF788_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8933930.1"
                     /translation="MLFVGDDWAETHHDVEVMDAAGRRLAKARLPEGVAGMARLHAMI
                     AEALGEDAEEAQVLVGIETDRGPWVAALIAAGYTVFAINPLQVARYRERHSVSGAKSD
                     AADAHTLADMVRTDSHQLRPVAADTPQAEAVKVVTRAHKTLIWERTRHTQRLRHALRE
                     YFPAALDAFEDLDAPDVLELLAKAPDPDSAAKLTIAQISAALRRARRRHVAEKAARIQ
                     AVLRGEHLGQPKVLTTAYAATTRAAVAVLQTLDEQVKVLQGQVDAYFGQHPDAEIIVS
                     QPGLGPVLGARVLAEFGDDPERYTDARARKNYAGTSPITRASGKKKIVIARYVHNDRL
                     IDALMTQAFSALNASPGARAYYDQLKARGTEHNAALRQLANRLVGILHGCLKTRTCYD
                     EATAWSHRVEQAAA"
BASE COUNT          447 a          901 c          810 g          435 t
ORIGIN      
        1 agcatataga ttatcttccc tgccagcgcg tggcttctgg gtaagcagac acgcgctggc
       61 atcaagctcg acgaactgcg gcagcgcggt caagctcgca ggctgtcggc aaaggcaccg
      121 tcaacttggt cgcctacctc cggctgggag gatcgccggg ttgcttgcgg gatgaggagg
      181 ttgggtgacc gtcggtgcgc cgtcctctaa ggggtttcgc ttcccggcgg agatcatcag
      241 ccactgtgtc tggctctacc accgcttccc actgagcttc cgtgaggtcg aagagatgat
      301 gttggaacgc gggagcgtgg tcagccacga gaccatccgg caatggtgtg cgaagttcgg
      361 ccaaacctac gctaacgagc tgcgccggcg tcgggctcgc ccgggggaca agtggcatgt
      421 cgatgaggtg ttcctcacga tcaacggcca gcggcgctcc ctgtggcggg cggtggacca
      481 gcagggcacc gtactggaga ttctggttcc ctcccgacgc gacgccaagg ccgcgaccag
      541 gttctttcgt aagctgctca cggggctgcg gtacgtgccc cgggtgctga tcaccgacaa
      601 actggccagc tacggcgctg cccggcgccg ggtgctgcgc tcggtcgagc accgccagtc
      661 gacgtatctg aacaaccggg cggagaattc gcatcaaccg acccgggctc gggaacgagc
      721 gatgaaacgg ttcgcctcag cccggcacgc ccagcgattc ttatctgcct tcagcggcat
      781 ctccccacac ttccggcccg gccgtcaccg gctctccgcc caggagtacc gccgtgaaat
      841 gaccgaccgg ttcaccacct ggaaccaggt caccggcacg gccacagcag ccgcctgaca
      901 cagcaccagg gaccacccaa gccgaccccg accctgcctc cacaaccagg caagctcacc
      961 aagttgacag acatcccagg agcttaaatg tcaagcggca gcctgctcga cgcggtgcga
     1021 ccatgcggtc gcttcgtcgt agcaggtgcg ggtcttgagg cagccgtgca ggatgcccac
     1081 gagccggtta gcgagttgcc gcagggcggc gttgtgttcg gtgccgcggg ctttgagctg
     1141 gtcgtagtag gcacgagcgc ccggtgaggc gttcagtgcg ctgaaggcct gggtcataag
     1201 agcatcaatg agccggtcat tgtgcacata tcgggcgatc acgatcttct ttttgccgga
     1261 ggcacgggtg atcgggctgg taccggcgta gttcttgcgt gcccgagcgt cggtgtagcg
     1321 ctcggggtca tccccgaact cggcgagcac ccgggcaccc agaaccggtc ccagaccagg
     1381 ctgggacacg atgatctcag cgtccgggtg ctgcccaaaa tacgcatcca cctgcccttg
     1441 cagaaccttg acttgctcat caagagtctg cagcaccgcg acggcggcac gggtcgtggc
     1501 cgcgtaggcc gtggtgagta ccttgggctg acccagatgc tcaccacgca gcaccgcctg
     1561 gattcgggcg gccttctccg cgacgtgacg gcggcgggcg cgcctgagcg cggcactgat
     1621 ctgggcgatc gtcagcttcg ccgccgagtc cgggtccggc gccttggcca gcagctccag
     1681 gacatcgggg gcatcgaggt cctcgaacgc gtccagcgcg gccgggaaat actcccgcag
     1741 tgcgtgacgc agccgctggg tgtggcgggt gcgttcccag atcaacgtct tgtgcgcccg
     1801 cgtcaccacc ttcaccgcct ccgcctgcgg tgtgtccgca gccaccggac gcagctggtg
     1861 ggaatcagtg cgcaccatgt ccgccagggt gtgcgcgtca gcggcatcgc ttttggcccc
     1921 cgagacgcta tgccgttccc ggtagcgggc cacctgcaac gggttgatcg cgaacaccgt
     1981 gtacccagcg gcgatcaacg ccgccaccca cggcccccgg tcggtctcga tcccgaccag
     2041 cacctgcgcc tcctcagcgt cctcgccgag cgcctcggcg atcatcgcgt gcaaccgggc
     2101 cattcccgct accccctccg gcagccgggc tttggccaac cgccgccccg cagcgtccat
     2161 cacctccaca tcgtgatgcg tctcggccca gtcatccccc acgaacagca acgcctctcc
     2221 cctcctcgtt ctcgatcacc tcacacagcc agcgggagaa ccatcagcga cctaatgaac
     2281 cagtgctcac accacaccac agcgggcacg acatcccatt agcgatcaac tctcccgacc
     2341 caccagcagg ggcacgatct gtcaacagga ctcccggtcc agtgccatac agtgctcacc
     2401 taccagcggc ctggcgcgag tctgccggat ggccaacccg ctagctctca ttagtgccat
     2461 gctgggtcct tggtcgatgt gctgtgccgc ccggaggcac cgcaggggct ggtggccgcg
     2521 gggacggtgc aaccacatcg cctggcgcac ccctggcgag gccgagcagg tccagtggcg
     2581 caacaccggc act
//
LOCUS       DASVXZ010000339         2588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_395326, whole genome shotgun sequence.
ACCESSION   DASVXZ010000339 DASVXZ010000000
VERSION     DASVXZ010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395326"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1527)
                     /gene="ligA"
                     /locus_tag="VF788_07025"
     CDS             complement(<1..1527)
                     /gene="ligA"
                     /locus_tag="VF788_07025"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEX8933931.1"
                     /translation="MDEDLLAESSMTAQPPAEIRAEHGELVETVRGHQFRYYVLDAPT
                     VSDAEFDRLFRRLQELEEHWSALRAPDSPTQLVGGGFSTEFAAHDHLERMLSLDNAFD
                     TDALRAWADRVAREVGADVHYLAELKIDGLAVNLLYENGRLVRGLTRGDGRTGEDVTL
                     NLRTVRDIPDRLTPSAEYPVPELLEVRGEVFFRLADFAELNAALVEAGKAAFANPRNS
                     AAGSLRQKDPRVTATRPLRMLCHGLGRRRGFEPALQSQSYDALAAWGLPVSEHTRLLS
                     TVDQLIEYITYWGEHRHDVNHEIDGVVVKIDEVAAQRRLGSTSRAPRWAIAFKYPPEE
                     ATTRLLDIRVNVGRTGRVTPFAFMEPVTVAGSTVSLATLHNADEVRRKGVLIGDTVTI
                     RKAGDVIPEVLGPVVDLRSGDEREFVMPTQCPECGTPLRRERENDVDIRCPNARSCPA
                     QLRERIFHMAGRGAFDIEMLGYEAAVALLAAGVVHDEGDLFALDDSKLLAVDLFRTKA
                     G"
     gene            complement(1621..1824)
                     /locus_tag="VF788_07030"
     CDS             complement(1621..1824)
                     /locus_tag="VF788_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005441988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEX8933932.1"
                     /translation="MAQGVVKWFNAEKGFGFISVDGGGPDVFVHFSAIQGDGYRTLEE
                     NQRVEFESSQGPKGPQADLVRAL"
     gene            complement(2060..>2588)
                     /locus_tag="VF788_07035"
     CDS             complement(2060..>2588)
                     /locus_tag="VF788_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933933.1"
                     /translation="AVLARLDAQARARSGDYSLAQWVGATPSQWLDDVAYLTGRMSTD
                     APLDDLQWDPEVYDAARIQERDACWLARGLHMVTTAAVDVTGRLVAFTQIGGDTTSHW
                     FAGQWDTIVAPEHRGHRLGALIKVANLDLARTQRPELRIIDTCNADSNPYMVAINEAM
                     GFRPHRRAVDWQLEL"
BASE COUNT          445 a          898 c          844 g          401 t
ORIGIN      
        1 ccccgccttg gtgcggaaca ggtccaccgc cagcagcttc gagtcatcga gggcgaatag
       61 gtcaccctcg tcgtgcacca cacccgcagc gagcagtgcc accgcggcct cgtaacccag
      121 catctcgatg tcgaaagcac cacgcccagc catgtggaag atccgttccc ggagctgagc
      181 cgggcaggag cgggcgttag ggcagcggat gtcgacgtcg ttctcccgct ctcgacgcag
      241 tggcgtgccg cactccggac actgcgtagg catgacgaac tcgcgctcgt caccactgcg
      301 cagatccacc accgggccga gtacttcggg gatgacgtcg cctgccttgc ggatcgtcac
      361 ggtgtccccg atcagcaccc ccttccggcg tacctcatcg gcattgtgca gcgtggccaa
      421 tgagaccgtg gaacccgcga cggtgactgg ctccatgaac gcgaaggggg tgacccgccc
      481 ggtgcgcccg acgttgaccc ggatatccag cagccgggtg gtggcctcct ctggcgggta
      541 tttgaaggcg atcgcccagc gcggcgcccg ggatgtggag cccagccggc gttgcgccgc
      601 cacctcatcg atcttcacca ccacgccgtc gatctcgtga tttacgtcgt ggcgatgctc
      661 gccccagtag gtgatgtact cgatcagctg gtcgactgtg gacagcagcc gggtgtgctc
      721 ggagaccggc agcccccagg ccgccaaggc gtcgtaggac tgcgactgaa gagccggctc
      781 gaaaccgcgc cggcgaccca ggccgtgaca gagcatccgc agcggccggg tcgcggtcac
      841 ccgcggatcc ttctgccgca acgagcccgc agcggagtta cgcgggttgg cgaaagccgc
      901 cttgccagcc tcgaccagtg cggcattgag ctcagcgaag tcggcgagcc ggaagaacac
      961 ctcgccgcgc acctcgagta gctccggcac cgggtactcg gccgagggag tcaaccggtc
     1021 tgggatgtcc cgcaccgtgc gcaggttgag ggtgacgtcc tcaccggtgc gaccatcgcc
     1081 ccgggtcagg ccacggacca gtcgcccgtt ctcgtagagc aggttcaccg ccagcccgtc
     1141 gatcttcagc tcagccaggt aatgcacatc ggcacccacc tcgcgagcga cccggtcagc
     1201 ccaggcccgc agcgcatcgg tgtcgaaggc gttgtccagg ctgagcatcc gctccaggtg
     1261 atcgtgggcg gcgaactcgg tgctgaagcc gccgccgacc agctgggtcg gagagtccgg
     1321 tgcccgcagc gcggaccagt gttcctcgag ctcctggagc cgtcggaaga gccgatcgaa
     1381 ctcggcgtcg gagactgtcg gtgcgtccag cacgtaatag cggaactggt gcccgcgcac
     1441 ggtctccacg agctcgccgt gttcggctcg gatctccgca ggcggctgcg ccgtcatgct
     1501 cgactcggca agcaggtcct cgtccatcac gcaagggaga ctagctccgg accccgacac
     1561 cgtgcgcaca gcgcgctgcc ccgcaccggt gaccggtgcg gggcagcgga tgaaacgctg
     1621 ttagagggcg cgaaccaagt cagcctgcgg ccccttgggg ccctggctcg actcgaactc
     1681 cacgcgctgg ttctcttcca aggtgcggta gccgtcaccc tggatggcgg agaagtggac
     1741 gaacacgtcg gggccacccc cgtcgacgga gatgaagccg aagcccttct ccgcgttgaa
     1801 ccacttcact acgccctgtg ccatgtgctc tccctgtgga atctgatgct gcagccagca
     1861 ccgtgccagc cgcacggttg cgcggaccac gcgccccggt aggaggcgtc cctgagggaa
     1921 gcgcgagccc gtagtcagac attccacgga cgcttcacaa cgatcgggga actacacgac
     1981 cacaacctgg cgtcacgtta tcacctcccg cacccggggc cagcactgga cattcgtcag
     2041 atcggttgta aagcagggac tacagctcga gctgccagtc aaccgccctg cggtgcggcc
     2101 ggaaccccat cgcctcgttg atggcgacca tgtacgggtt ggaatcagca ttgcaggtgt
     2161 cgatgatccg cagctcgggg cgctgggtcc gggcgagatc cagattggcc accttgatca
     2221 gggcgcccag ccgatgaccg cggtgctccg gtgcgacgat ggtgtcccac tgaccggcga
     2281 accagtgcga tgtggtgtca ccaccgatct gggtgaaggc aaccagccga ccggtgacat
     2341 ccacggccgc ggtggtgacc atgtgcagtc cgcgggcgag ccagcaggcg tcccgctcct
     2401 gaatccgcgc cgcgtcgtac acctccgggt cccactgcag gtcatccagc ggggcatcgg
     2461 tggacatccg gccggtgagg taagcgacgt catccagcca ctgcgacggc gtcgcgccca
     2521 cccactgggc cagcgagtaa tccccggagc gggcccgcgc ctgcgcgtcg agccgggcca
     2581 gcacggcc
//
LOCUS       DASVXZ010000340         1782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_735030, whole genome shotgun sequence.
ACCESSION   DASVXZ010000340 DASVXZ010000000
VERSION     DASVXZ010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735030"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VF788_07040"
     CDS             complement(<1..351)
                     /locus_tag="VF788_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX8933934.1"
                     /translation="MQLGLVGLGRMGANMRDRLRAAGIEVFGYSRTSPARDVTSLAEL
                     VDRLVAPRTVWVMVPAGTATRETVMQLAQLLDDGDLVVDGGNSRYTDDQAHAALLANH
                     GIGYLDCGVSGGIWG"
     gene            753..>1782
                     /locus_tag="VF788_07045"
     CDS             753..>1782
                     /locus_tag="VF788_07045"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8933935.1"
                     /translation="MTVERRRWLALLVLCLGDLMIVLDSTIINVALPSIRADLGFSDT
                     SLAWVVNVYMLTFGGFLLLGGRMGDLFGHRRLFLIGVTVFTCASLACGLAGSPAALIG
                     ARALQGLGGAVVSVVALSLIMMLFTEPAERAKAMGVVGFVIAGGGSLGVLLGGVLTAR
                     DWHWVFLVNIPIGIAVIVLCLVLLPASAGQDGARRLDVAGSVTVTAALLIAVYAIMDG
                     NHAGWGSVRTIGLLIAAAALLAVFLRIETRVDSPLMPLGLFRLRSVSTANIVGVLWAA
                     AMFGWFFLSALYLQLVFGFGPLGVGLAFLPGNLIMGALSLGLSERIVLRFGIRAPLVT
                     GMLLVAAGL"
BASE COUNT          244 a          570 c          597 g          371 t
ORIGIN      
        1 gccccagatc ccgcccgaga ccccgcagtc caggtacccg atgccgtggt tggccagcaa
       61 cgctgcgtgc gcctgatcat ccgtataccg cgagttcccg ccgtcgacga ccagatctcc
      121 atcatctagt agttgcgcca gctgcatcac ggtctcccgg gtcgctgtcc cggccggcac
      181 catgacccac accgtgcggg gtgccaccaa ccgatcgacc agctcggcca atgatgtgac
      241 atcgcgggcc ggcgaggtgc gggagtagcc gaagacctcg atgccagcgg cccgtagccg
      301 gtcgcgcatg ttggcgccca tccgacccaa tccgacgaga ccaagctgca cggccagtcc
      361 ttcccgtggt gcgtgtgctt accgtagcgg cgacggattc atccactgcc cgagtagtgg
      421 gtgttgtctc tatatagaga gacatcagta gcagtaatag gtgctgtggg cagtgtggat
      481 gcctgccata cccgcaggcc cgggagcgcg gcgcggatgg acctcagctg agcgcaggtg
      541 gtagagcgca ccggcccgcg gtggacggtg gcgcggcggt gggtgcggtg cacagcgttg
      601 gccacttatc cacagagttg tcctcagatg tgggtggatc gattacgcaa agtgtcaccc
      661 gctgcagcct ggccgcaggt accagcgcgt gagcgccggt acctgccgat aaatcaatca
      721 cttctgtcag accggtcagc catgatgctg acgtgactgt ggagcggaga cgctggctgg
      781 cactgctcgt gctgtgcctg ggtgacttga tgatcgtgct cgacagcacg atcatcaacg
      841 ttgcgctgcc gtcgatccgc gcagatctcg ggttctccga cacctcgctg gcctgggtgg
      901 tcaacgtcta catgctcacc ttcggtggct tcctgctgtt gggtgggcgg atgggcgacc
      961 tgttcggcca ccgtcggctg ttcctgatcg gcgtgacggt gttcacctgc gcctcgttgg
     1021 cgtgcggcct ggccggatca ccggcagccc tgatcggtgc gcgggcgctg cagggactcg
     1081 gcggcgcagt cgtgtccgtg gtcgccctgt cgttgatcat gatgctgttc actgagccgg
     1141 ccgagcgcgc caaggcgatg ggcgtcgtcg gattcgtcat cgccggcggc ggcagtttgg
     1201 gtgtgctcct cggcggggtg ttgaccgccc gcgactggca ctgggtcttc ctggtcaaca
     1261 tcccgatcgg gatcgcggtc atcgtgctgt gcctggtcct gctgcctgcg agtgctggtc
     1321 aagatggggc gcggcggctc gatgtcgccg ggtccgtcac ggtcactgca gccctgctga
     1381 tcgccgtcta cgccatcatg gatggcaacc atgcgggttg gggatcggtc cggacgatcg
     1441 gcctgctcat tgccgccgcc gcgctgctcg cggtgttcct ccgcatcgag acccgtgtcg
     1501 actccccgct catgccgctc ggactgttcc gtctgcgcag tgtcagcacc gcgaacatcg
     1561 tcggtgtgct gtgggcggct gccatgttcg gctggttctt cctgtccgcg ctgtacctgc
     1621 agctggtctt cggcttcggc ccgctcgggg ttgggctcgc gttcctgccc gggaatctga
     1681 tcatgggtgc cttgtcactc ggcctgtccg agcgaatcgt cctgcgcttt gggatcaggg
     1741 caccacttgt caccgggatg cttctcgtag ccgcgggtct cg
//
LOCUS       DASVXZ010000341         2380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_844035, whole genome shotgun sequence.
ACCESSION   DASVXZ010000341 DASVXZ010000000
VERSION     DASVXZ010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844035"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VF788_07050"
     CDS             <1..192
                     /locus_tag="VF788_07050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933936.1"
                     /translation="NQGVNIALGGSLLLVVIWGFLGYMSLLSIPPGINGDNLLHLVVA
                     LATLIVGGGLLSGRERDTA"
     gene            complement(326..1261)
                     /locus_tag="VF788_07055"
     CDS             complement(326..1261)
                     /locus_tag="VF788_07055"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEX8933937.1"
                     /translation="MTSWTSAPVVDVLAVLAVAGYLTAVFRRARTSEPRWPLRATASW
                     LAGVVVLLVSVHSSIEVYGHVLLWVHMIQHLLLIMVVPVLLIWGQPVRLALRRAPSSR
                     LARWLTFPVVTLGFYTAVLVITHLTGFPEAMATQSGVHYLEQVLYLVSGYLLFWPLVG
                     SELSPWPIPHIVRFALLGLAMGADTLVGVALMLTGYPLAPSTGLMRAGWGPSLLEDQN
                     WSGAIMWVGGDGLMMLLMLAVVAQWSAIGSGARLGDWLESARRQSLAKIGSTSGDDHN
                     TVGASADVDDDEEARQAYNRMLAELNRRSSPGSGG"
     gene            1425..1904
                     /locus_tag="VF788_07060"
     CDS             1425..1904
                     /locus_tag="VF788_07060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933938.1"
                     /translation="MSVHQVQIEVILLSVADDLGLRWRVARGNLPSGCRPDTRARELA
                     GLTAAVPTATVVHSTSWRPAPDGLILTYAVLPDPAPAEGTVRAVPADAKVVSSSNAAN
                     PTPPVVTVEHVLAHALRHLSMVARTSHTVAKAVDVYPGLWHAVVTHTPDVAGQLVGT"
     gene            2005..>2380
                     /locus_tag="VF788_07065"
     CDS             2005..>2380
                     /locus_tag="VF788_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933939.1"
                     /translation="MHRALVERLGAPPVDAVLLDSPYGFQENADEISQRTVSYFRNLR
                     ITLDVASWRTANDVLPRERALARIDAADYVFSGPGSPTYALGVWENSNLCDVLGDKLA
                     GGGCVTFASAAAATLGAVTVPVY"
BASE COUNT          433 a          803 c          741 g          403 t
ORIGIN      
        1 aatcagggcg tgaatatcgc actcggtggc tccttactgt tggtcgtcat ctggggcttt
       61 ttgggttaca tgtctttgct gtctatcccc cccgggatca acggagacaa tctcctgcac
      121 ctggtggtcg ctctggcgac cctgatagtt ggtggtggcc tgctcagcgg tcgcgaacgc
      181 gataccgcat aggcgtggga cggtgagctc tcgggtcgtg ttccctggcc gcagggaaca
      241 cgacgagccc ggcgagcgat tgcccaaagc gccggtcatg aaacgacttg cggcctgggt
      301 cagacagctc cgctgctgat tcgagtcatc caccgctgcc gggggacgac cgccggttca
      361 gttccgccag catccggttg taggcctgcc gagcctcttc gtcgtcgtcg acgtccgcgc
      421 tggctccgac ggtgttgtgg tcgtctccag aggtagagcc gatcttggcc aacgactggc
      481 ggcgagcgga ctccagccag tcgccgagcc gggccccgga tccgattgcg ctccactggg
      541 caacgacggc gagcatcagc agcatcatca gaccgtcacc acctacccac atgatcgctc
      601 ctgaccagtt ctggtcctcg agcagggagg ggccccagcc tgctcgcatc agcccggtgc
      661 tcggcgcgag cgggtatccg gtgagcatca gtgcgacgcc caccagggtg tccgcaccca
      721 tcgccaatcc gagcagcgca aaccggacga tgtgcgggat cggccaggga ctcagctccg
      781 agcccaccaa cggccagaac agcaggtaac cactgacgag gtagaggacc tgctctaggt
      841 agtgcacccc agactgggtg gccatcgcct ctgggaaacc ggtcaaatgc gtgatcacca
      901 gcaccgcggt gtagaagccc agcgtcacga cgggaaacgt cagccatcgc gccaggcggc
      961 tactcggggc ccggcgcaac gcgagccgga ccggttgtcc ccagatcagc aacaccggca
     1021 caaccatgat caacaataga tgctggatca tgtgcaccca cagcagcaca tgcccgtaca
     1081 cctcgatgct gctgtgcacc gaaaccagca gcaccaccac accagccagc cacgatgcgg
     1141 tggcccgcag tggccagcgc ggctcgctcg tccgtgcccg gcgaaacaca gcggtgaggt
     1201 agccggctac cgcgagcacc gccagcacat cgacgacggg cgccgacgtc cagcttgtca
     1261 cggcaacctg ccaggtcagc ggcgggatgt ccggcctccc ttcatgaatt gccagtcacc
     1321 ccgagcgtaa cgccgagggc aatcctgtgg ttggtgtacc aggatcgccg aagatccgac
     1381 catgccctaa tctcgcagtt gcattattac ggcaactgct gggggtgtcc gtgcaccagg
     1441 tgcagatcga agtgatcctg ctgtccgttg ctgacgacct tgggctgaga tggcgggttg
     1501 cgagggggaa tctgccatcg gggtgccggc ccgatacccg ggcgcgagag ctcgccggat
     1561 taaccgccgc cgtgcccacc gcaacagtcg tgcactcgac atcatggcga cccgccccag
     1621 acggtctgat tctcacctat gcggtgctgc ccgacccggc ccccgccgag ggcaccgtgc
     1681 gtgcggttcc agccgacgcc aaagtcgtct cctcctcgaa cgcagccaac cccaccccac
     1741 cggtcgtgac ggtcgaacac gttctggccc acgcactacg gcacctgtcg atggtcgctc
     1801 gcaccagcca tactgtggca aaggcagtcg atgtgtatcc cgggctgtgg cacgctgtgg
     1861 tcacgcacac ccccgatgtg gcaggtcagc tcgtcggcac gtgagcctga aacgtgagca
     1921 gaggggtgat ctcctttcgt gatagcccgc ccccggctac tggccatcat gggatcggga
     1981 gagaccgccc cgacgatggc gaaggtgcat cgcgcgctcg tggagcgcct cggcgcgcct
     2041 cccgtcgacg cagtattgct tgacagcccc tacggattcc aggaaaacgc cgacgagatc
     2101 tcccaacgca cggtcagtta cttccggaac ctccggatta ccctcgatgt ggcatcgtgg
     2161 cgcacggcga acgatgtcct accgcgcgaa cgagcattag cgcggatcga cgccgccgat
     2221 tatgtcttct ccggcccggg cagccctacc tatgccctcg gagtgtggga gaacagcaac
     2281 ctgtgtgacg tcctgggtga caagctcgcg ggcggcggtt gcgtgacatt cgccagcgcg
     2341 gcggcggcga ctctgggcgc cgtcaccgtg ccggtgtacg
//
LOCUS       DASVXZ010000342         8255 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1094116, whole genome shotgun sequence.
ACCESSION   DASVXZ010000342 DASVXZ010000000
VERSION     DASVXZ010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8255
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1094116"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(447..1583)
                     /gene="ugpC"
                     /locus_tag="VF788_07070"
     CDS             complement(447..1583)
                     /gene="ugpC"
                     /locus_tag="VF788_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007025501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEX8933940.1"
                     /translation="MDRPDTNSTSGIVLECVRKEFPGGVVAVRDISLEVAPGEFVVLV
                     GPSGCGKSTTLRIVAGLEAVTAGQVRIAGRVVTGLPPRHRNVAMVFQNYALYAHMTVR
                     ANISFGLKMAGTPKREIRARVDQAADILGITGLLGRKPRELSGGQRQRVAMGRAIVRE
                     PAAFLMDEPLSNLDAKLRVEMRAEITNVHRRIGAPTLYVTHDQTEAMTMGDRVAILRD
                     GALEQIGTPHELYERPVNVFVAGFIGSPAMNLQLAQLDSSGDTWCASIGGSRLPIPPK
                     ARAALRPYADREVLLGLRPEDFVSTEDVHNGKHGIIEATVARAESLGSELLVYLSING
                     AAGSRPLTARLDRRAAVREGAPARIGIDLQRLYFFNPQSGAAIR"
     gene            complement(1570..2430)
                     /locus_tag="VF788_07075"
     CDS             complement(1570..2430)
                     /locus_tag="VF788_07075"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEX8933941.1"
                     /translation="MTRGPATQLVRAGVIAAIALWSLVPIGLGVATSLSTQADVRAVP
                     ARWLPHHPTLDAYRSLLGGTGDSRAGGTVSESGAFAHAIGNSTSITLMSTLAILCVAI
                     SAGYAFARLRFPGRSALFWAIVATIIVPVFTVVIALFGLMADAHLIDRKVGLVLVFAG
                     TTTPLAMWLVHNHVKQLPPEPEEAALIDGCTRWQAFWHVALPQMRSGIAALSAIVMLS
                     IWGEFLIPLLLTSTNASKPVAVLIPEYVGKYTTNYPLLAAAGVLAMLPPALVVLVLNR
                     HIRGMISGSS"
     gene            complement(2427..3371)
                     /locus_tag="VF788_07080"
     CDS             complement(2427..3371)
                     /locus_tag="VF788_07080"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEX8933942.1"
                     /translation="MGLDIHKRETPTGGASSSPCSRVDVAAREASRVGMLMVAPAVII
                     TAVLVIYPLIKGFRRSLESGDAAIGGQPRFVGLGNYAEVLSSATARDAIGHTLIYVAL
                     AVTLELTLGLIIAVALHRFFRGRGIVLAILILPWALPSVVSGVLWRRVFDPEGGLLNS
                     MLAQLHVVSHPHVWMASRGWALVFITLVHVWGVVPLISLILVAGLQSLPEEVFSASAV
                     DGATPLRQFRHITLPLLRPSIVVALSIGTVGALKIFDEIYVLNGTALNTRSILMEVYN
                     TTFVNADFAHGTALAFLLTALTALFAAVCAVAFGRSRT"
     gene            complement(3378..4556)
                     /locus_tag="VF788_07085"
     CDS             complement(3378..4556)
                     /locus_tag="VF788_07085"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX8933943.1"
                     /translation="MIEGQEINVLLPYKVPGRLLDEFTRETGVKVNVNVTSWDAVHSK
                     LIVANTAKTYVADVTELDWSFTGQFAAAGWYEPLEKVLDPVLITDLSQADAALTVGGH
                     TYGACYSNDYRLSLYNGRMFRAAGVSEFPKTFAELGPVVAKLKASGVRYPLGIPMAAT
                     EGGVTPWYLLTLAMGGELFDKDYKPLFTDPGSAGYRALQFEVDALKNGWVSPGSVTLD
                     NGPVFDQFAAGSSAILFASSPGNLSTANDPKESSIAPEAQPALVPGVRGPGTTFGLPE
                     GLAIPVTAKHKDAARAFIEWWMQPATLRVLYKEAGMLPCRSSVLTSMAHSGEIEGGTV
                     VGDELAHVVPLFGQGAPKWYGQFSSTAQGLLNAAVKGDVSVGAALTQLAAKATELAGS
                     "
     gene            complement(5101..6123)
                     /locus_tag="VF788_07090"
     CDS             complement(5101..6123)
                     /locus_tag="VF788_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEX8933944.1"
                     /translation="MRGAVLHAPGDVRVEEREDPRILVPTDAVIRLSATCVCGSDLWP
                     YRGIEKITGPSPVGHEYVGIVEEVGSEVSNVRPGQFVVGSFFASDNTCEICRAGYQSS
                     CTHREGMGALGAQAQYLRVPLADGTLVATPDVPSDDLVPGILAASDVLGTGWFGAVAA
                     EAGPGKTVAVVGDGAVGLLGVLAAKQLGADRIIAMSRHEPRQKLALEYGATDIVTERG
                     DEGVARIKDLTNGLGAHSVIEAVGTQESMMQAIRSTRPGGHVGYVGVAHDVELPGEEL
                     FFSHVHLHGGPAPVRRFLPELIDLIWNRQIDPGKVFDLSLPLEQAAEGYKAMDERRAI
                     KALLHV"
     gene            6192..6842
                     /locus_tag="VF788_07095"
     CDS             6192..6842
                     /locus_tag="VF788_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933945.1"
                     /translation="MAAGGVEQRGQRHPANPDARRDGEFLLKRCTCPPGPTAASPGCG
                     RTEVAARAGVSIEYYCALGGVSASVLDAIARTPQLDDDERAHLFDLARAADGSSALLR
                     PRHRRQKLLQEPGCSTTPQHAARARPRRQPPNRRHPRDHAHRPRHAAEPDARVTAIAR
                     LLGSAPAPSTTTSPTCANYAPPAERAASRRPLIAERVLVRGCSTSGDESVDQQEDQ"
     gene            complement(6783..7052)
                     /locus_tag="VF788_07100"
     CDS             complement(6783..7052)
                     /locus_tag="VF788_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEX8933946.1"
                     /translation="MGILGWIVLGLIAGAIAKLIMPGDDPGGIIVTMLLGIVGAVIGG
                     FLGSRIFGTGLQTFWNLQTWIVAIIGSLILLLIYRLIAGRRAASH"
     gene            complement(7171..>8255)
                     /locus_tag="VF788_07105"
     CDS             complement(7171..>8255)
                     /locus_tag="VF788_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8933947.1"
                     /translation="HRRELQVHCYRMLGSFQDAEDALQDTLLAAWQGLGEFGGRASIR
                     TWLYRIATNRCLNALRSASRRPAKEWDVPTVEPPEPTRLGEVVWLEPIPDALLEGMIN
                     VPLGPEARYERTESISLAFVTALQVLPPRQLAVLILRDVLGFHANEVADMLDSTVESV
                     NSALKRARASLQRGRPPSAESEPAPAHGSPSEDAIVAKFVSAWESADLDALVALLTDD
                     VFVSMPPMPFEYEGRDVVARFCASLFGAGRRFDLVPTRANGQPAFGAYLRASSGIRHG
                     TGLYVLTLTGDVICAMTRFDNSVLPWFGLPRSLPSDSHHTPNRTSRGRARDGTAARAR
                     RSVSQKHAIQMASIYKPIEPAAQRQH"
BASE COUNT         1435 a         2746 c         2750 g         1324 t
ORIGIN      
        1 tatgcggtca gtaggtcgcg tcgacccggc gcgcgagcca gcgtgtcgga gtcgcacagc
       61 tacgcataca acgttcctaa tctttacact cggccgggtg gaaacgtatt cctatatcca
      121 agttccggcg gcaggcaaag ccagtccagt ctaggtctcg cggcgcagcg tcgtgctgag
      181 tcttgacgca tgacagtatg atgcaccccg cttttattgg gggtcatgcc gggtttagca
      241 gagccagttg ggatctattg ttagtcctag ggcggttatc tcagcgcgac cgtatgccca
      301 ttgctcaagt agtcggtact gatgttcgca catagggcac catgcggttg ggtccttatg
      361 aattcggcga attatagggt ccagtggtta taccacatcc tgggcagcct tcgagtctga
      421 tcaaccagaa caccaacggg acgtgctcat ctgatggcgg cgccgctttg gggattgaag
      481 aagtacagcc gctggaggtc tatgccgatc cgggcgggtg cgccctctcg taccgcggcc
      541 cggcgatcca ggcgcgccgt gagcggccgc gagccggcgg cgccattgat ggagaggtac
      601 acgagaagct cggagcctag cgattcggct cgcgccaccg ttgcctcgat gattccgtgc
      661 ttgccgttgt gcacgtcttc ggtggacacg aagtcttccg ggcgcagtcc cagcaggacc
      721 tcgcggtcgg cgtatggccg cagtgctgcg cgcgccttcg gggggatcgg caggcgggaa
      781 ccgccgatcg aggcgcacca ggtgtcgccg gagctgtcga gttgtgccag ctggaggttc
      841 atcgctggtg agccgatgaa tccggcaacg aacacgttga cgggccgttc gtatagctcg
      901 tgcggtgtgc cgatctgctc gagcgctccg tcgcgaagga tcgcgacgcg gtcccccatt
      961 gtcatggcct cggtctggtc atgggtgaca tagagcgtcg gtgcaccgat gcgccggtgg
     1021 acgttggtga tttctgcgcg catttcgacg cgcagtttcg cgtcgaggtt cgacagtggc
     1081 tcgtccatca ggaacgccgc tggctcgcgg acgatggctc gtcccatggc cacccgctga
     1141 cgctgacccc ccgaaagctc gcgcggcttg cggccgagca agccggtgat gccgaggatg
     1201 tccgccgctt ggtccacccg ggcgcggatc tcacgcttgg gcgtgcccgc cattttcaat
     1261 ccgaagctta tgtttgcccg cacggtcatg tgcgcataca gcgcgtagtt ctggaagacc
     1321 atcgcgacgt tgcgatgccg tgggggcaga ccggtcacca ctcggcccgc aattcgcacc
     1381 tgtcctgcgg tcaccgcctc aagtccggcg acgatgcgca gcgtggtgct ctttccgcag
     1441 cctgaggggc ccacgagcac gacgaactcg cccggcgcta cctccaggct gatgtcgcgt
     1501 accgcgacga cgccgcccgg gaattccttg cggacgcact cgagaacaat gccgctcgtc
     1561 gagttggtgt caggacgatc cactgatcat cccccggatg tggcgattca ggacgaggac
     1621 gacgagggcg ggcggcagca tcgcgagcac gcccgccgcc gccagcagtg ggtagttcgt
     1681 cgtgtacttg ccgacatact ccgggatgag cacggccacg ggcttgctgg cgttggtcga
     1741 ggtcaacagc agcgggatca ggaactcgcc ccagatcgag agcatgacga tcgcgctgag
     1801 cgcggcgatg cccgagcgca tctgcggcaa cgccacgtgc cagaacgctt gccagcgcgt
     1861 gcagccatcg atcagcgcag cctcttcggg ctcggggggc agctgcttga cgtggttgtg
     1921 cactaaccac atcgccagcg gcgtggtcgt gccagcgaac accaacacca gtcctacctt
     1981 gcggtcgatg aggtgagcgt cagccatgag cccgaacaac gcgatgacga cggtgaacac
     2041 cgggacgatg atcgtcgcga cgatcgccca gaacagcgca ctgcggccag ggaaacgcag
     2101 gcgggcgaac gcgtaaccgg cgctgatcgc gacacacagg atcgccagcg tcgacatcag
     2161 cgtgatcgat gtgctattcc cgatggcgtg ggcgaacgca ccgctctccg agacggtgcc
     2221 gccagcccgt gagtcaccgg tgccgccgag cagcgagcgg taggcgtcga gcgtcgggtg
     2281 atgaggcagc cagcgggccg gtaccgcccg cacgtcggcc tgggtcgaca ggctcgtggc
     2341 cacgccgagc ccgatcggca ccagggacca cagggcgatc gcggcgatca ccccagctcg
     2401 caccagctgc gtagcggggc cgcgtgtcac gtcctcgacc tcccgaaagc gaccgcgcag
     2461 acggctgcga acagcgcggt gagggcggtg agcagaaacg cgagcgccgt accgtgggcg
     2521 aagtcagcgt tgacgaaggt ggtgttgtag acctccatga ggatcgagcg ggtgttgagt
     2581 gccgtgccat tgagcacgta gatctcgtcg aagatcttga gtgccccgac ggtgccgatg
     2641 ctcagcgcga ccacgatcga gggccgaagc agtggcagcg tgatgtggcg gaactggcgc
     2701 agcggcgtgg ccccatcaac cgccgaggcg ctgaagacct cctcggggag gctctggagt
     2761 cccgcgacga ggatgaggct gatgagcggc acgacgcccc acacgtgcac gagtgtgatg
     2821 aacaccagcg cccagccgcg actggccatc cagacgtgtg ggtggctcac gacgtgcagc
     2881 tgcgcaagca tgctgttgag cagcccgccc tccgggtcga agacacgccg ccagagcacg
     2941 ccgctgacca cggagggcag cgcccacggc aggatcagga tcgccagcac gatgccacgt
     3001 ccacggaaga accgatgcaa cgccacggcg atgatcagcc cgagcgtgag ctcgagtgtc
     3061 accgccagcg ccacgtagat gagcgtgtgc ccgatcgcgt cgcgcgcggt cgcggagctc
     3121 aggacctcag cgtagttgcc taggccgacg aagcgcggtt gcccaccgat ggccgcgtcc
     3181 ccggactcca ggcttctccg gaagcccttg atcagcgggt agatgaccag caccgcggtg
     3241 atgatcaccg cgggtgccac catcagcatc ccgacccgac tcgcctcccg cgcggccaca
     3301 tcgacccggc tgcagggact cgaggatgca cctccggtgg gagtctcccg cttgtggatg
     3361 tccaatccca tcaccgccta cgaacccgcc agctccgtgg ccttcgcggc gagctgcgtg
     3421 agcgccgcac cgacgctcac gtcgcccttt acggcggcgt tgagcaggcc ctgcgcggtg
     3481 gagctgaact ggccatacca cttcggcgcg ccttggccga acagcggcac aacgtgggcg
     3541 agctcgtcgc ccacgacggt gccaccctca atctccccgc tgtgggccat ggacgtgaga
     3601 accgagctgc ggcagggcag catgcccgct tccttataga gcacgcggag ggtggccggc
     3661 tgcatccacc actcgatgaa ggcgcgggcc gcgtccttat gcttggctgt caccgggatc
     3721 gccaggccct caggcaaacc gaacgtcgtg cccgggccgc ggacgccggg gaccagcgcg
     3781 ggctgagcct caggggcgat gctcgactcc ttcgggtcgt tggcggtcga caggttgccg
     3841 gggctcgagg cgaagaggat cgcgcttgag ccggcggcga actggtcaaa caccggtccg
     3901 ttgtccagcg tgacgctgcc cggggagacc caaccgttct tgagcgcatc gacctcgaac
     3961 tgcagggccc ggtagccggc tgatccaggg tcggtgaata ggggcttgta gtccttgtcg
     4021 aagagctcgc cgcccatcgc cagagtgagc agataccacg gcgtgacacc gccttccgtg
     4081 gccgccatgg gtatgccgag cggataacgc acgcccgatg ccttcagctt ggccaccacc
     4141 ggaccgagtt cggcgaacgt cttcgggaac tcgctcacac cggccgccct gaacattctg
     4201 ccgttgtaca gcgacaagcg atagtcattc gaatagcagg ccccgtaggt gtggccgccc
     4261 acggtcaaag ccgcgtcagc ctgggaaaga tccgttatca gcaccggatc gagcaccttc
     4321 tccagcggct cgtaccaccc ggcggcggcg aactgaccgg tgaaggacca gtcgagctcc
     4381 gtcacgtccg cgacataggt cttcgccgtg ttggcgacga tcaacttgga gtgcaccgcg
     4441 tcccagctag tgacgttgac attcaccttc acaccggtct cgcgcgtgaa ctcgtccagg
     4501 agccgcccag ggaccttgta tggcagcagg acgttgatct cctgaccctc gatcaacacc
     4561 ttgccgcgcg gcgcgaaccc cgaacgtccc tcgccatatc caccatcaca cgcagcgatg
     4621 accaacacgg ccgcgcagac caccatcgag agaacaccac acctcgcgcg cttcatcgcc
     4681 cactgcctca ctgagcacca ccaccggctg aggtgccgcg atcgttggta tctgaacccg
     4741 ccggtgacta ccgccgcccc ctggacaacc cgccaacgtg cccatcagag cccgcccagc
     4801 gtggcactgt tgtacggcaa aggagcatcc tcgccgcgca ccaaagtggt aagacaggcc
     4861 cctcagccgc gctagacgaa ccgggcgaca atgggggtct cgatggtggg gctgagcgcg
     4921 cacagcgccg aggtgaggac gtacgcgacg acgccgacca gcagcgggcg acggcgccga
     4981 accggtcgga caggggcccg gcgttcgtga gcgtggccat cacgctggtt ccttccctgt
     5041 gcaaaaggcg ccgcccggcc cagcttccgc agagcggggc aggcggcgtc gcagtggggt
     5101 ttacacgtgc agcagggcct tgatggcgcg gcgctcgtcc atggccttgt agccttcggc
     5161 ggcctgctca agcgggaggc tgaggtcgaa caccttgccc gggtcgatct gccggttcca
     5221 gatcaaatcg atcagctcgg gcaggaagcg gcgcacgggt gcggggccgc cgtgcaggtg
     5281 cacgtgggag aagaacagct cctcgccggg cagctcgacg tcgtgggcga caccgacgta
     5341 gccgacgtgt ccgccgggcc gggtggagcg gatggcctgc atcatcgact cctgggtgcc
     5401 gaccgcctcg atgaccgagt gcgcgccgag cccgttcgtg aggtccttaa tccgggccac
     5461 gccctcgtcg ccgcgctcgg tgacgatgtc cgtggccccg tactcgaggg cgagcttctg
     5521 gcggggctcg tgccggctca tcgcgatgat gcggtctgcg ccgagctgct tggccgccag
     5581 cacgccgagc agcccgacgg cgccgtcacc gaccaccgcg acggtcttgc ccggaccggc
     5641 ctcggcggcc accgcaccaa accacccagt gcccagcaca tcagaggccg cgagaatgcc
     5701 cgggaccagg tcgtccgacg ggacatcagg cgtggcgacc agggtgccgt cggcaagggg
     5761 gacgcgcagg tactgcgcct gggcgcccag cgctcccatg ccctcgcggt gagtgcacga
     5821 gctctggtag ccggctcggc agatctcgca ggtgttgtcg gaggcaaaga acgagccgac
     5881 cacgaactgc cctggtcgca cgttgctgac ctcgctaccg acctcctcga cgatgccgac
     5941 gtactcgtgg cctaccggtg agggcccggt gatcttctcg atcccgcgat acggccacag
     6001 gtccgagccg cagacacagg tggcggacag cctgatgacc gcgtcggtcg ggacgaggat
     6061 ccgcggatcc tcgcgttcct ccacccggac gtcaccgggg gcgtgcagga cagcaccacg
     6121 catgatggtt ctcctctgat cagggcaagg tctggcagcg caactgggct agcgtcggct
     6181 cgctgctcga catggccgcc ggcggcgtcg agcagcgagg ccaacgacat ccagcaaacc
     6241 ccgacgcacg acgcgatggg gagttcctgc tgaaaagatg tacctgcccg ccgggaccaa
     6301 ccgccgcgtc ccccggctgc ggccgcacgg aagtcgccgc gcgggccggc gtgagcatcg
     6361 agtactactg cgccctgggc ggggtgtcag ccagcgtgct cgacgcgatc gcccgcaccc
     6421 cgcagcttga cgacgacgaa cgcgcacacc tgttcgacct cgcccgggcc gccgacggca
     6481 gcagcgcact cctgcggccc cggcaccgca ggcaaaaact tcttcaggaa ccagggtgtt
     6541 caacaacgcc ccaacacgcc gcccgcgcgc ggccgcgtcg gcagccgccc aaccgtcgtc
     6601 accccagaga tcatgcgcac cgcccgcgac atgctgccga acctgacgct cgcgtcaccg
     6661 ccatcgcccg gctgctcggc tcagccccgg caccctctac aaccacatcc ccgacctgcg
     6721 cgaactacgc gccgccggcc gaacgcgcag cttcccgccg tccgctcatc gccgagcggg
     6781 tattagtgcg aggctgctct acgtccggcg atgagtcggt agatcagcag gaggatcagt
     6841 gatccgatga tcgcgacgat ccacgtctgg aggttccaga acgtttgcag tcctgtgccg
     6901 aagatgcggc tgccgaggaa cccgccgatc acggctccga cgatgcccaa aagcatggtg
     6961 acgatgatgc cgccggggtc atcacccggc atgatcagtt tggcgatggc gcccgcgatc
     7021 agtcccagca caatccatcc gagaatgccc atgccttttg ctccctccgt gcctggaggg
     7081 tcagtgtgat ccttcttggg gcgcctcgca cgcattgtca caccgtggcc ggagacaacg
     7141 acctgaatgg acctgccaca ctggttacgc tcagtgctgc cgctgggcag ccggctcaat
     7201 cggtttgtag attgacgcca tctgaatcgc gtgcttttgg gagactgagc gacgtgctcg
     7261 cgcggcggtt ccgtccctgg cacggccccg gcttgtccgg ttcggcgtgt gatgtgaatc
     7321 gcttgggagc gatcgtggca gcccgaacca tgggagcacg ctgttgtcga agcgggtcat
     7381 ggcgcagatc acgtcaccgg tgagggtgag gacgtacagg ccggttccat ggcggatgcc
     7441 ggaagaggcg cgcaggtaag ctccgaacgc cggttgcccg ttggcccgcg tcggcacgag
     7501 gtcgaacctc cggcccgcgc cgaagaggct agcgcagaag cgggccacga catctcggcc
     7561 ctcgtattca aagggcatcg gcggcatcga gacgaagaca tcgtccgtca gcagggctac
     7621 cagcgcgtcc agatccgcgg actcccacgc gctgacgaac ttcgccacga tcgcatcctc
     7681 ggagggtgag ccgtgggcgg gagccggttc gctctcagcg ctcggtggtc gtcctcgctg
     7741 caggctggcg cgggctcgtt tgagggcgct gttgactgat tcgactgttg agtcgagcat
     7801 gtcggccacc tcgttcgcgt ggaatccgag aacgtcgcgc aagatgagca cggccagctg
     7861 gcggggcggc aggacctgaa gtgcggtcac gaaggccagg gagatggatt ccgtccgctc
     7921 gtagcgggcc tcggggccga gcggcacgtt gatcatcccc tcgagcaggg cgtcggggat
     7981 tggctcgagc catacgacct cgccgagccg ggtcggctcg ggcggttcaa cagtgggcac
     8041 gtcccactcc ttggcgggtc gccggctggc cgagcgaagc gcgttgaggc atcggttggt
     8101 ggcgatccgg tagagccagg tgcggatcga ggcgcgtccc ccgaactcgc cgaggccttg
     8161 ccaggcggcc agcagcgtgt cctggagggc gtcctcggcg tcctgaaagg atccgagcat
     8221 ccggtaacag tgcacctgta gctctcggcg gtgca
//
LOCUS       DASVXZ010000343         3252 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_664033, whole genome shotgun sequence.
ACCESSION   DASVXZ010000343 DASVXZ010000000
VERSION     DASVXZ010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3252
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_664033"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..818
                     /locus_tag="VF788_07110"
     CDS             <1..818
                     /locus_tag="VF788_07110"
                     /inference="COORDINATES: protein motif:HMM:NF019984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HEX8933948.1"
                     /translation="RLGALGLELHPEKTKVVFCKDTNRPGEAQHTSFDFLGYTFRGRL
                     VRGPRGNFVGFTPAMSGKAKKTVGRKIRAWHLRRRSGSDLTDLAEDINPQVRGWFSYY
                     GAFYRSELGSLAWRIDQHLVRWAMHKFKRLRGRPARAWAWLDAVRQREPMLFAYWHLL
                     PVTRGGLWEPYDGRLSRTVCAVRRFVVSPTQLGGTWRNVPGSDGLPGRESARGQEHVR
                     KAADGRRRPTVALRDPRDTVKAGLLEAQSPAMKVSIHRNDACNRCHAVLRHEP"
     gene            1072..2859
                     /locus_tag="VF788_07115"
     CDS             1072..2859
                     /locus_tag="VF788_07115"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8933949.1"
                     /translation="MRSATTVLDVIRERGRRGLPLERLYRYLFNPQLFLLAYGRIYAN
                     AGAMTPGVTGETVDGMSLAKIETIIDTLRNERYRWRPVKRVHIPKKNGKTRPLGLPTW
                     SDKLLAEVVRLLLEAYYDVQFSDRSHGFRPGRGCHTALSEVAGVWKGTHWFIEGDISD
                     CFGSLDHQVMASILAEKIHDGRFLHLVSRMLQAGYLEDWRWHATLSEAPQGGVASPIL
                     SNIYLDRLDQFIEQSVLPEHNHGTRRRPNPAYETVEDSLARARRRGNRPAVRLLQRNR
                     RRLPSQDPNDPGFRRLRYVRYADDWLLGFTGPKHEAEVITSRVAAFLREELKLELSQP
                     KTLITHATSQAARFLGYQVRAQHADTKITRNRRAVNGAIGLFVPKDVIRQRCARYMSK
                     GKPAQRGPLLHDEDFTIVAKYQAEYAGLVQYYLLAQDVFRLGRLRWVMETSMLKTLAG
                     KHKSTVTKMAAKHKTVIETPDGPRRCFQVTVQRDRGRKPLVARFGGIALKRQRTAVLT
                     DLSPTMASTKRNELIHRLLAECCEVCASRSHIEVHHVRKLADLNRPGRPDRPPWVHLM
                     AMRRRKTLVVCRACHENIHAGRSSTSTRN"
BASE COUNT          639 a         1036 c         1060 g          517 t
ORIGIN      
        1 cccggctcgg ggctcttggc ctggagctgc acccggagaa gacgaaggtc gtgttctgca
       61 aggacacgaa ccggccgggg gaggcgcagc acaccagctt cgacttcctc ggctacacct
      121 tccgaggacg cctggtccgg ggaccgcgag gcaacttcgt gggattcacc ccggccatga
      181 gcggcaaagc gaagaaaacg gtcggccgca agatacgggc ctggcacctc aggcgtcgca
      241 gtgggtcaga cctgaccgac ctcgccgagg acatcaaccc tcaggtgcgg ggctggttca
      301 gctattacgg agccttctac cgctccgagc tgggctccct tgcctggcgc atcgaccagc
      361 acctggtgcg atgggccatg cacaagttca agcggctacg gggcagaccg gccagagcct
      421 gggcatggct ggacgctgtt cgtcagcgtg agcccatgct gttcgcgtac tggcacctgc
      481 tccctgtcac ccggggcggc ctgtgggagc cgtatgacgg gcgactgtca cgtacggtgt
      541 gcgccgtgag gcgcttcgtc gtatccccga cgcagttggg aggaacttgg aggaacgttc
      601 ctgggtctga tggcttacct ggacgcgaaa gcgcgagggg acaagagcat gtcaggaaag
      661 cagcggacgg gcggaggcgt ccaaccgttg cgctgcggga cccgcgcgat acggtcaagg
      721 ctggattgct tgaagcccaa tccccagcga tgaaagtgag catccatcgg aatgacgcct
      781 gtaaccgatg ccacgccgtg ctccggcatg aaccgtgagg ctggcgcaac ctccacggcg
      841 cggggcaccg tccagtgagg acgggtaagg ggatgagtgg gcggcctacg tcgcgctcga
      901 tacgtacgac gaagacgtac cacgggatcg cctacgggac gcgagtccta aggcgacgga
      961 gtgccggtag tagtcgtggg ggtcacgtcc caccaaggag cccgggaaag ccggaaacag
     1021 ggcgaagcgg cacaggtggt caatgatgtc cggcgatggg aggtacgcgt gatgcggagc
     1081 gccacaacgg tgctggacgt catccgggag cgcggcagac gaggtctgcc gctggaaagg
     1141 ctgtatcgat acctgttcaa cccgcagttg ttcctcttgg cctacgggcg catctacgca
     1201 aacgctggtg cgatgacgcc cggagtcacc ggggagaccg tggacggcat gtctttggcg
     1261 aagatcgaga cgatcatcga tacgctgcgc aacgagcgtt accggtggcg tccggtcaag
     1321 cgggtgcaca tcccgaagaa gaacgggaag acgcgcccgc tagggctgcc gacctggtcg
     1381 gacaaactcc tcgccgaggt ggtccgcctg ctgttggagg cgtactacga cgttcagttc
     1441 tctgaccgct cccacgggtt ccgtcccggc cggggctgcc acaccgcgct gagcgaggtg
     1501 gcaggcgtct ggaaggggac acactggttc atcgagggcg acatctctga ctgcttcggc
     1561 agcctagacc atcaggtcat ggcctcgatc ctggcagaga agatccacga tggccggttt
     1621 ctgcacctgg tcagccggat gctgcaggcc ggatacctgg aggactggcg gtggcacgcc
     1681 acgctcagcg aagcaccgca gggcggagtg gcatcaccaa tcttatccaa catctacctg
     1741 gaccggctcg accagttcat tgaacagtct gtcctgcctg agcacaacca cggcaccaga
     1801 cgccggccca accctgccta cgagaccgtc gaggactccc tcgcgcgggc ccgacgacgc
     1861 ggtaaccgcc cggcggtacg gctgcttcag cgaaaccgcc ggaggctgcc gagccaggac
     1921 cccaacgacc cgggtttccg gcggcttcgc tatgtcaggt acgctgatga ctggctgctg
     1981 gggttcaccg gtcccaagca cgaagccgaa gtgatcacat cgagggttgc ggcgttccta
     2041 cgcgaggagc tcaagctgga gctgtcgcag cccaagacgc tgatcacaca cgccaccagc
     2101 caggcggcgc ggttcctcgg ctaccaggtc cgagcccaac acgccgacac gaagatcacc
     2161 cggaaccgtc gggcggtcaa cggcgcgatc ggcctgttcg tgcccaaaga cgtgatcagg
     2221 cagcggtgcg cccgttacat gagcaaaggg aaaccggcgc aacgcggccc gctgctgcac
     2281 gacgaggact tcaccatcgt cgcgaagtac caggccgagt acgccggcct cgtccagtac
     2341 tacctcctcg cccaggacgt cttccgcctg ggcaggctgc gctgggtcat ggagacctcg
     2401 atgctcaaga ccctggccgg caagcacaag tccacggtca ccaagatggc cgccaagcac
     2461 aaaacggtca tcgaaacacc agacggacca cggaggtgct tccaggtcac cgtgcagcgc
     2521 gaccggggaa ggaagccact ggtcgcccgc ttcggcggga tcgcgctcaa acggcaacgc
     2581 acagcagtcc tgaccgacct gtcaccgacc atggccagca ccaagcgtaa cgagctgatc
     2641 caccggctcc tcgccgaatg ctgtgaggtc tgcgcctcgc ggagccacat cgaggtccac
     2701 cacgtccgca agctcgccga tctcaaccgc ccaggccggc ccgacaggcc accgtgggta
     2761 catctcatgg caatgcggcg acgcaagacc ctcgtggtct gccgagcctg ccacgagaac
     2821 atccacgcag gacgatccag cacatccacc cggaactgac cactggagag ccgtgtgtcg
     2881 ggaaaccgac cagcacggtt cgggaagggg ccgacggaaa cggacctcca ccagaggcac
     2941 ctcgccggcg gcctacttca cgctcagggt cgagggtttc tatgccctct tggtcgggct
     3001 atggatgaac acaaagccct ccgtcgtgat cagcgggtcg ctgttcgcga gggtgtttct
     3061 atgccctctt ggtcgggctg tggatggaca ccggtgaaca actaccaggg catcgtccag
     3121 aatcatatcg tttctatgcc ctcttggtcg ggctgtggat ggacacgctc caagccctgc
     3181 gacgcatggg ggacgaatgt ttggtttcta tgccctcttg gtcgggctgt ggatggacac
     3241 cggcaccagc gg
//
LOCUS       DASVXZ010000344         5429 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_395692, whole genome shotgun sequence.
ACCESSION   DASVXZ010000344 DASVXZ010000000
VERSION     DASVXZ010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395692"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VF788_07120"
     CDS             <1..326
                     /locus_tag="VF788_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012782780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8933950.1"
                     /translation="TFSVNSLAQIAALASLDVADELLGRCRDITVERARVRTELLAMG
                     YPVADSQANFVWLPLGEQTVAFTEHCLDHKIVIRPFPGDGARVTISDPSDNDAFLAAA
                     RSFQP"
     gene            complement(420..1433)
                     /gene="moaA"
                     /locus_tag="VF788_07125"
     CDS             complement(420..1433)
                     /gene="moaA"
                     /locus_tag="VF788_07125"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005451411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEX8933951.1"
                     /translation="MNAVRDEFRRGLRDLRISVTDRCNFRCCYCMPRDVFGTDFPFMK
                     SSELLSFEEIVRLTKIFAGLGVQKVRLTGGEPLLRHGIEQLIEQLVEIDGIDDVAMTT
                     NGSLLAKKAQSLRDAGLNRVTVSLDSLDPETFRAMSDVKIPLSRVIEGIAAAAEAGLT
                     PVKVNTVVKRGANDGQGLLDLAAFGREHGYVVRFIEFMDVGVTNGWCLDEVVPAAEVV
                     ETIGAVWPAEPLDPDYVGEVAARYRYLDGSGEFGVITSISQPFCGTCTRARLSAKGEV
                     YTCLFAGVGHDLRAPLRDGATDEELEKRVTGIWKARTDRYSAQRTTATLGLPKVEMSY
                     IGG"
     gene            1622..2314
                     /locus_tag="VF788_07130"
     CDS             1622..2314
                     /locus_tag="VF788_07130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933952.1"
                     /translation="MTGTSGDQRGGRSWQLFHPTRSEVGVSVTAQPYGSFAPRPTSLR
                     GGMGVVNFALGLLVVFGLVLYGAWLVVAAISAITGSDQPSAAAHAGDSVADSTQSTAA
                     LAPVGTPEPTPTGSTLPFDQLWISGDGNTIVAGAPMAGISPLTGESLIQIPVTLTNNS
                     EQNWIPESTAFLGTLDRAPVAESTEGDWMYRSPIVPHTSVTLNKVFVGTPGQFTLTIN
                     TPHGTASFAGRV"
     gene            complement(2343..3896)
                     /gene="ligD"
                     /locus_tag="VF788_07135"
     CDS             complement(2343..3896)
                     /gene="ligD"
                     /locus_tag="VF788_07135"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEX8933953.1"
                     /translation="MRPMLPVAGPLPVGPGWAFEFNWDGIRSLACAEQGRLGLFSGTH
                     RSITAAYPELEAFTGRRRMLLDGKIVALDSCGRPSFMQLQRRMNVQRPTSTVLRRAPV
                     SYYVFDLLSLDGESTVALPYQRRRELLAELEFPGTVVLPPTFLDTDGQTVLDTAVQHG
                     LHGVIAKRLDSTYRSGRSRSWVQTTLRQTQEVIIGGWVSERRRVASIGALLVGVPTGA
                     GLRYVGQVGTGFTDATRQQLHERLIELVAPESPFAEEVPSEPDRVVHWVAPRLLGEVS
                     YRQWTAHGRLGHPTWRGLRPAKHVAAVQAPIVVKSREPEREDQRLLAELDRAVAQVRG
                     ELRTLRDQISPHFLHNTISTIVAMVTTDPSRARDLLILFAEFARYSLRSASETTLDEE
                     LENIERYLTLQRARFGARLRVEFEVAPAMLAVVVPFLAVQQLVDNAVRNVERQQLGGT
                     VTLSARPDGDDCLITVEDDGPGKLDPDVAATLRSIDNQLRERFGERYRLISDLVPGTG
                     TTITLRVPT"
     gene            complement(3952..4806)
                     /locus_tag="VF788_07140"
     CDS             complement(3952..4806)
                     /locus_tag="VF788_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020500645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEX8933954.1"
                     /translation="MSQCGVMRAIWKGALAFGMVSIPVRLYSATEDRDVSFHQVHEED
                     AGRVRYRRVCEVCDEEVAYADLAKGYELPSGETVLLTDEDFANLPLPTTKVVELVAFV
                     PADQVDPLALARGYYLEPEASGRKPYELLRAALERTQRVGLAKIAVRSKESLAVLRPR
                     GEVLALQTMVWPDEVRKAQFDVLDREVAVNDAEERMADTLIEAMSGDFAPEQYSDGYR
                     EALLSVIEAKTAGAEITPRAAPAEPAPSVDLITALQASVEAAKAARGKPVNVPTQRET
                     SEKPSRSR"
     gene            4895..>5429
                     /locus_tag="VF788_07145"
     CDS             4895..>5429
                     /locus_tag="VF788_07145"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8933955.1"
                     /translation="MVSGFDADPEHLMRINQANWDARTPIHVDSAFYGLDGTVSSADW
                     FADFEWTDLGELAGRDVVHLQCHLGTETVVFAERGARTVGLDISAESIRQARRIAAEQ
                     CADVEYVQSNVYDASAALGGRTFDVVYTGKGALCYLPDLDRWAGVVAGLLRPGGVLYV
                     VEFHPLLNALGVVPPPDG"
BASE COUNT          906 a         1869 c         1723 g          931 t
ORIGIN      
        1 tgaccttcag cgtcaactca ttggcccaga tcgccgcgtt ggccagcctc gacgtcgccg
       61 atgagctgct gggccgctgc cgggacatca ccgttgagcg ggcgcgggtc cgcaccgagc
      121 tgctcgcgat gggctacccg gtggcggatt cgcaggccaa cttcgtctgg ctaccactgg
      181 gggagcagac cgtcgcgttc accgagcact gcctggacca caagatcgtg atccgcccgt
      241 tccccggcga tggcgcccgc gtcaccatca gcgaccccag cgacaacgac gcgttcctcg
      301 ccgcagcccg aagcttccag ccataaccca agatcagccc gatatggagc catgtcgggg
      361 tttccgaggc cccactgacc tcgacatggc tccatatcgg ggaaggggtg gggcggcggt
      421 cagccgccta tgtagctcat ttcgaccttg ggcaggccta gggtggcggt ggtgcgctgg
      481 gcggagtagc ggtcggttcg ggccttccag atgccggtga cccgcttttc gagctcctcg
      541 tcggtggcgc cgtcccgcag cggggcgcgc aggtcgtggc ccacgccggc gaacaggcag
      601 gtgtacacct cacccttggc ggacagccgg gcccgggtgc aggtgccgca gaacggttga
      661 gagatcgagg tgatcacgcc gaactccccg gagccgtcca ggtaccggta ccgggcggca
      721 acctcaccca cgtagtccgg atccaacggc tcggccggcc acacagcacc aatggtttcg
      781 acgacctccg cggctgggac gacctcgtcc aggcaccagc cgttggtgac gcccacgtcc
      841 atgaactcga tgaaccgcac gacatagccg tgctcgcggc cgaacgcggc aagatccaga
      901 aggccctggc catcgttcgc tccccgcttg accaccgtat tgaccttcac cggggtcagc
      961 ccggcctcag cagccgcggc gatcccctcg atgacgcggg agaggggaat cttcacgtcg
     1021 ctcatggccc ggaatgtctc cggatccagg gagtccaggc ttaccgtgac tcggttcagg
     1081 ccagcgtccc gcaggctttg tgccttcttc gccagcaacg acccgttggt cgtcatggcc
     1141 acatcgtcga taccatcgat ctcaactagc tgctcgatca gctgttcgat gccatggcgc
     1201 agcagcggct cgccgccggt gagtcgcacc ttctggacac ccaggccagc aaagatcttg
     1261 gtcagccgga cgatctcttc aaacgacagc agttccgagg acttcatgaa cggaaagtcg
     1321 gtgccgaaga cgtctctggg catgcagtag cagcagcgga agttgcaccg atcggtaacc
     1381 gagatacgca gatcccgcag gccgcgcctg aactcgtcgc gcacagcgtt catggcttcc
     1441 attcgatcag tctactcttg cttaccctga tgtacttatt cgttggcgcg gccgcggcgg
     1501 ttcaccaccc ggcgtgatca gctcggtgac gtccacattg tggacgtcac ttcccatcac
     1561 tatatgtaac tggtcactct ttcaggctgt taacagatcg agcacgccga gcgaaaacta
     1621 gatgaccggt acgtcaggtg accagcgtgg tggtcggtcg tggcaactgt tccaccccac
     1681 tcgctcggag gttggcgtgt ccgtaactgc gcagccctac ggttctttcg cgccgcgacc
     1741 gacgtcgttg cggggtggca tgggcgtcgt gaacttcgca ctcggtttgc tcgtcgtgtt
     1801 cggtctggtg ctctacggcg catggttggt cgtcgcggcg atctccgcaa tcaccggttc
     1861 cgaccagccc agcgccgctg cacacgccgg tgactccgtg gccgattcca cccaaagtac
     1921 cgccgccctt gcgccggtgg gaacgcccga gcccactcca accggctcca ctcttccctt
     1981 tgaccagctg tggatctccg gtgacggcaa cacgatcgtc gccggcgcac ccatggcggg
     2041 catctcaccg ttgaccggcg agtcgctgat ccagatcccg gtgaccctca ccaacaacag
     2101 cgaacagaac tggatccccg agtccaccgc cttcctcgga actctcgacc gcgcgccggt
     2161 agccgagtcg accgagggcg actggatgta ccggtccccg atcgtcccgc acacttcggt
     2221 gaccctgaac aaggtgttcg tcggcacccc cggccagttc accctgacca tcaatacacc
     2281 gcacggcacc gcatccttcg ccggtcgggt ctgacgcttt caagctcccg gagtgggggg
     2341 aatcaggtcg gcacgcggag ggtgatggtg gtgccggtgc cgggcacgag atctgagatc
     2401 agccggtagc gctcaccgaa ccgctcacgt aactgattat cgatcgagcg cagagtcgcc
     2461 gcgacgtcgg gatccagctt gccaggcccg tcgtcctcga ccgtgatcag gcagtcgtca
     2521 ccatcgggtc gagccgagag agtgacggtg ccgccgagct gctggcgttc tacgttgcgg
     2581 acggcgttgt cgaccaattg ctgaaccgcc aggaacggca ccacgaccgc cagcatggca
     2641 ggcgcgacct cgaactccac ccgcaggcgt gcaccgaaac gtgcccgttg cagcgtcagg
     2701 taacgctcga tgttctccaa ctcctcgtcg agcgtggtct cgctggccga gcgcagcgag
     2761 taccgggcga actcggcgaa aaggatcagc aggtcgcggg cccgggacgg atcggtggtg
     2821 accatcgcga cgatggtgct gatcgtgttg tgcaggaagt gcggggagat ctggtcccgg
     2881 agtgtcctta actcgccgcg gacttgcgcg acggcacggt cgagctcggc gagcaatcgc
     2941 tgatcttctc gttcgggctc ccgggacttc accacaatcg gtgcctggac cgccgccaca
     3001 tgtttggcgg gtcgcagacc tcgccaggtg ggatggccga gccggccgtg ggcggtccat
     3061 tgccggtagg acacctcgcc gagcagccgc ggcgctaccc agtgcaccac ccggtcgggc
     3121 tcgctgggca cctcctcggc gaatgggctc tccggagcca ccagctcgat caaccgctca
     3181 tgcaactgct ggcgggtcgc gtcggtgaaa cccgtaccga cctggccgac gtagcgcaaa
     3241 cccgccccgg tgggcacccc caccagcaac gcaccgatcg acgcaacgcg gcgacgttca
     3301 gagacccatc cgccgatgat cacttcctgg gtctgccgca gggtcgtctg cacccagctg
     3361 cgggatcggc cggaccggta ggtcgaatcg agccgcttgg cgatcacccc gtgcaggccg
     3421 tgctggacgg cggtgtccag caccgtctgg ccgtcggtgt ccaggaaggt cggcggcagc
     3481 acgaccgtgc cggggaattc cagttccgcc agcagctccc gccggcgctg gtagggcagc
     3541 gcgacagtgg attcgccgtc cagcgacagc agatcgaaca cgtagtagct caccggcgcc
     3601 cggcgcagga ccgtcgatgt cgggcgctgc acgttcatcc gccgctgtag ctgcatgaag
     3661 ctgggtcggc cgcaggaatc cagcgcgacg atcttcccgt ccagcagcat ccggcgtcgc
     3721 cccgtgaacg cttcgagctc cggatacgcc gcggtgatgc tgcggtgggt gccgctgaac
     3781 aatcccaacc gcccctgctc cgcgcaggcc agcgaccgga tcccatccca attgaactcg
     3841 aacgcccacc ccggccccac cggtaacggc cccgccaccg gcaacatcgg acgcatgagc
     3901 tcggacatca tctccccgcg ttctagaagg ctgatctcac cgccaacgcc gtcaacggct
     3961 ccgactgggc ttttccgagg tctcgcgttg agtggggacg ttcacgggct tgccgcgggc
     4021 ggccttggcg gcctcgacgg aggcctgcaa ggcagtgatc agatccaccg acggggccgg
     4081 ttccgctggt gcagctcgcg gcgtgatctc cgcgcccgct gtcttggcct cgatcacgga
     4141 caacagcgcc tcgcggtagc cgtcgctgta ctgctcgggc gcgaagtcac cggacatcgc
     4201 ctcgatgagg gtgtcggcca tcctctcctc agcgtcgttg acggcgacct cccggtccag
     4261 cacgtcgaac tgggccttgc gaacctcatc cggccacacc atcgtctgca gcgccaggac
     4321 ctcgccccgc ggtcgcagca ccgcgagcga ttccttgctc cgcaccgcga tcttggccag
     4381 acccacccgt tgggtgcgct ccagcgcggc tcgaagcagc tcgtagggct tgcggccgga
     4441 tgcctcgggc tccaggtagt acccccgcgc cagcgcaagc ggatcgacct ggtcggccgg
     4501 cacgaaggcg accaactcga cgaccttggt ggtgggcaac ggaagattcg caaaatcctc
     4561 gtcggtgagc aggaccgtct ccccggacgg cagctcgtag cccttggcca ggtcggcgta
     4621 ggcgacctcc tcgtcacaca cctcgcacac ccggcggtag cgcacccggc cggcgtcctc
     4681 ctcgtgcacc tgatggaagg acacatcgcg gtcctcggta gccgaataca gccgaacggg
     4741 gatgctgacc atcccgaagg ccagtgcgcc cttccatatc gcccgcatca caccacactg
     4801 cgacactccg ggctccgtgt ccaccccatg cgaacagcgg cagccatcct caaggtgatg
     4861 gggccgattt ccgcgtcata cccggcacga tgacatggtg agcggtttcg atgctgaccc
     4921 cgagcacctg atgcggatca accaggctaa ctgggatgcg cgcaccccga tccatgtgga
     4981 cagcgcgttc tacggtctgg acggcaccgt gagctccgcg gactggttcg ccgactttga
     5041 gtggacggat ctgggcgagt tggccgggcg ggacgtggtg cacctgcagt gccacctcgg
     5101 cacggagacc gtcgtgttcg ccgagcgcgg tgctcgcacg gtcggtctcg acatctctgc
     5161 ggagtcgatc aggcaggcga ggcgcatcgc ggcggaacag tgcgccgacg tggagtacgt
     5221 ccagtccaat gtgtacgacg cgtcagcggc gctcggtggg cggacgttcg acgtcgtcta
     5281 cacgggcaag ggcgcgctgt gctacctgcc cgacctggac cgctgggccg gtgtggtggc
     5341 cgggctgttg cgtcccggtg gggtgctcta cgtcgttgag ttccatccgc tgctcaacgc
     5401 gctcggcgtg gtgccgccgc cggatggca
//
LOCUS       DASVXZ010000345         3553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1202399, whole genome shotgun sequence.
ACCESSION   DASVXZ010000345 DASVXZ010000000
VERSION     DASVXZ010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1202399"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..825
                     /locus_tag="VF788_07150"
     CDS             <1..825
                     /locus_tag="VF788_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HEX8933956.1"
                     /translation="CEGTVASMSQRAADGLDGFLTQVGDRIAESEVAGFDETGLRVAG
                     KLHWVHCARTGKHTLITCHRKRGREGIDDAGVLNRFRGIAVHDAWAPYDAYVDAEHQL
                     CCAHALRELAGVVDTAPQAEWCWATQAADALVAIQTLVTEAIAAGALDPAAIDEQIRR
                     YRSAAQIGITSTTARATTLMRQHNALARRLLNRQDDYLRFTRDWRIPPDNNGSERDIR
                     MIKLRQKISGCLRTLTGAQQFCAIRSYLSTAAKHGKHFLEVLIMLTEGRPWLPTHQ"
     gene            1320..2123
                     /locus_tag="VF788_07155"
     CDS             1320..2123
                     /locus_tag="VF788_07155"
                     /inference="COORDINATES: protein motif:HMM:NF016925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese catalase family protein"
                     /protein_id="HEX8933957.1"
                     /translation="MFLHNPKMMYTVRVDQPNPAFAKMLLEQFGGPNGELAAAMRYFT
                     QGWNEPDGPRRSMLLDIATEELSHLEMVAQTLSMLLKGSPSQLVDQVEGSYLGELLDD
                     KMPDYVNLSLNSGPNVLGGGGPRLTDSMGTPWTAAYIDTIGQPVADLHSDIAAEARAK
                     IVYERLIKQCDDAGCKDTLTFLMTREIAHQKMFQAALDAIVENFPPGTLPGDQALGHA
                     YVADSGDFSGDGKADGFELSQANSDWGFELDTNPVSHAADQQVGPPPAS"
     gene            complement(2495..2773)
                     /locus_tag="VF788_07160"
     CDS             complement(2495..2773)
                     /locus_tag="VF788_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933958.1"
                     /translation="MPGQERGGSDRKDLGPAAARQEPGHGGQPHPIGGWVAHPGNLSA
                     QYGVLVPQDQQFGILAQVSPHQHHGQTEQTTRQPVQDRQQQHPTIIHD"
     gene            3054..3425
                     /locus_tag="VF788_07165"
     CDS             3054..3425
                     /locus_tag="VF788_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933959.1"
                     /translation="MDFVQVDTVLLRRIYALIAVEHGSRRAHLVGVSAYPTGEWTTQA
                     ARNLLMDLGERATSVKFLLRDRDSRFTRAFDAVFAADNIRILTSPSRAPRANAICERM
                     IGALPRELLDRILIVNERHLR"
BASE COUNT          661 a         1169 c         1077 g          646 t
ORIGIN      
        1 tgcgagggca ccgtcgcgtc catgtctcag cgcgccgccg acggactgga cggcttcctc
       61 acccaggtcg gcgaccgcat cgccgagtcc gaggtggctg ggttcgacga aaccggcctg
      121 cgcgtggccg gcaagctgca ctgggtgcac tgcgcccgca ccggcaagca caccctgatc
      181 acctgccacc gcaaacgcgg ccgtgagggt atcgacgacg ccggcgtgct caaccggttc
      241 cgcggtatcg cggtccacga tgcgtgggca ccctacgacg cctatgttga tgccgaacat
      301 caactctgct gtgcccacgc cctgcgcgaa ctggccggcg tggtcgatac cgcacctcag
      361 gccgaatggt gctgggccac ccaggctgct gacgcgctcg tcgcgatcca gacgctggtg
      421 accgaagcga tcgccgctgg cgccctcgat ccggcggcga tcgatgagca gatccggcgc
      481 taccgctcgg ccgcacagat cggcatcacc tccaccaccg cccgcgccac cacgctgatg
      541 cgccagcaca acgcgcttgc ccgccgactg cttaaccggc aagacgacta cctccgcttc
      601 acccgagatt ggcgaatacc cccagacaac aacggctccg aacgcgacat ccgcatgatc
      661 aaactcagac agaagatttc cggatgcctg cgaaccctca ccggagccca gcaattctgc
      721 gcgatccgca gctacctctc caccgccgcc aaacacggca aacacttcct cgaagtcctc
      781 atcatgctca ccgaaggccg accctggctg cccacacatc aataatcaca ccgcggtcac
      841 ctgaccagtt actctctgct gtgccgggtg gttgccgcta acctgtggtt ggcctgtacc
      901 gcggtgtacc gcagtcgacc gctattgacc tctccttaga gcacgcggac agcacggcgg
      961 tgatagttct cctcgcagaa caggcaagca aggacccgtg tcgcctgatt cgtggtaata
     1021 gccagcgcgg gggttcgagg tgaacatcca caggttgacg cggtgggacg atccttggtt
     1081 gatcagtcct gggaggtatg cagccggtgg ttaggaggtt acgttctgtg accgtctgga
     1141 atgccgtgtg gtacggctgt gatatgaggt gcgaaatgtg agtcgtccgc agggggttca
     1201 tccttgtgtg catcgatggt gtgggagcgg tcaggggggg tactccgagg ttcgtgccgg
     1261 cgcctgttgt gttctagtgc ccgtggctgt ccagtatgcg aggaaaggaa gcctgtctga
     1321 tgtttttgca caacccgaaa atgatgtaca cggtgcgggt tgaccagccg aatcccgctt
     1381 tcgccaagat gctcctggag cagtttggcg gccccaacgg tgaactcgct gcggcgatgc
     1441 gctacttcac tcagggctgg aacgagcccg acgggccgcg ccgcagcatg ttgctcgaca
     1501 tcgcaaccga ggagctgtca cacctagaga tggtcgccca gaccctttct atgctgctca
     1561 aggggtcccc atcccaactt gttgatcagg tggaaggctc ctacctcggt gagctgctgg
     1621 acgacaagat gcccgactac gtcaacttgt ccctgaacag tggacccaac gtgctaggtg
     1681 gcggaggtcc gcggctgacc gactcgatgg gtactccgtg gactgctgcc tacatcgata
     1741 cgatcggcca gccggtcgct gacctgcact ccgacatcgc cgccgaagcc cgcgcgaaga
     1801 tcgtctacga gcggctgatc aagcaatgtg acgacgccgg ctgcaaggac actttaacct
     1861 tcctcatgac ccgggagatc gcccaccaga agatgttcca ggccgcgctg gacgcgatcg
     1921 tggagaattt cccacccggt accctgccgg gcgatcaggc gctaggtcac gcttacgtcg
     1981 ccgactcggg tgatttcagt ggcgacggta aggccgacgg cttcgagctg tcccaagcta
     2041 acagtgattg gggtttcgaa ctcgacacca atcccgtcag tcacgccgcc gaccaacaag
     2101 tcggacctcc accagcaagc tagctagaac aagtcgcgtt cagcaacgcc gctggttgca
     2161 atcaagggaa cagcgtgtgg gggtgccagg acgccggcgc ccccacccct caacaagcaa
     2221 taacttgttg ctgtgatcga ctcatccgct attcggagat ccgggttttg ggcagcgaat
     2281 gtgccggttg agtcaacagg gtccagcggg aatgtgttaa atcagcggtg ggtcttgaat
     2341 ggctccgcga taatttggca aagttgatca ccgagctgga ggaggctgcg ccaaaggggt
     2401 tggacagcag gcgtaccgcc tttaagaagc agggtcagat cgtgtgggct cggcaacacg
     2461 atgcagcggc tgacctgggc tgttcgtttg ctggtcagtc gtggatgatc gtcggatgct
     2521 gctgctgccg atcttgtacc ggttggcgtg ttgtctgttc ggtctgacca tggtgctgat
     2581 gcggcgagac ctgggcaagg atgccgaact gctggtcttg cggcacgaga acgccatact
     2641 gcgccgacag attgcccggg tgcgctaccc acccgccgat cgggtgtggc tggccgccgt
     2701 gtcccggctc ctgccgcgcc gccgctgggc cgaggtcttt gcggtcactc ccgccacgct
     2761 cctggcctgg caccgcagga ctggtctcgc gaaaatggga ctacaccgca cgccgtcggc
     2821 cgggacgttc cccgaccacg gcggcgatca cgaaacttgt gaggcgcatg gcaacagaga
     2881 accccgcctc gggccaccgg cgcgtgcagg gcgagctggt ccggctcggc catcgcatcg
     2941 ccgcctccac cgtgtggtag atcctccacg acgccggcat cgaccccgcc cctcggcggt
     3001 ccggttcgac ctggagacag ttccccctca cccaagccaa ggctgtcctg gccgtggact
     3061 tcgtgcaggt ggacaccgtg ttgctcaggc ggatttacgc actgatcgca gtcgagcatg
     3121 gttctcgccg ggcacatctg gtcggggtaa gcgcgtaccc gaccggagag tggaccaccc
     3181 aagccgctcg caacctgctg atggacctcg gcgagcgtgc cacctctgtc aagttcctgc
     3241 tccgggaccg ggattcccgg ttcaccaggg cattcgacgc ggtcttcgcc gcggacaaca
     3301 tccggatcct caccagccca tcccgagcgc cgcgggcgaa cgccatctgc gaacgcatga
     3361 tcggagcact gccccgcgag ctgctcgacc ggatcttgat cgtcaacgaa cgccacttac
     3421 gctgaatcct ctcgacctac ctgcaccatg tcaacaccgc gcggccacac cggacgctcg
     3481 ggcaacttgc cccagcccag gccgagaccc attccccgcg agtaatcaac ctcgccgacc
     3541 acaaagttcg ccg
//
LOCUS       DASVXZ010000346         3376 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_127086, whole genome shotgun sequence.
ACCESSION   DASVXZ010000346 DASVXZ010000000
VERSION     DASVXZ010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127086"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VF788_07170"
     CDS             complement(<1..274)
                     /locus_tag="VF788_07170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX8933960.1"
                     /translation="MNHSRGARDAEAAVPYPLRVAAALAWRVVVVAGMAVVVGYVVIA
                     LRQVVIPVAVALLLTALLGPVVDWLTGHRVPRGLATLVVLVAGLVLI"
     gene            complement(339..1874)
                     /locus_tag="VF788_07175"
     CDS             complement(339..1874)
                     /locus_tag="VF788_07175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933961.1"
                     /translation="MSQLPPEYLDSKTPPDVVVTDTLRPPIDDPTLGEPLGPPSPDAP
                     PLAASPDHLLVTVGDSITHGLTSGAVFRTDLSWPSLVAGGLGIPGFTVPSYGGPLGGL
                     PLNLEGLLRRLQEQFGDQLNFLEKLELPVILQRRCDENEDYWERGDGRKLPRVDLRYE
                     NLGIYGWDVRDAISYTAVRAAQRAALTPHDDLRGAKPENDNDIAASSVLAPFGIAATQ
                     IAAAQWHGDNGGIGTLVVALGANNALGSVVDKQPTWSDAGFDDLDRKGAYNVWRPVHF
                     AVEYAELVKALRSISAHRVVLATVPHVTIAPIAKGVNPQDPGQKWREGYRYFPYYIDP
                     WIEEKDFNPAKHRYLTHQQARAIDSAIDQFNETITDAVRHARREGRDWLVLDLCGVLD
                     GLGFRRFIQDPAARARNDWERFILPEPIADLDTRFFLSDKNGRQQGGLFGLDGVHPTT
                     SGYGVIAQAALDVLAGAGVPTTAIDFTSLRGKDTLNARAPALLTSVLGLLAPFLTVFV
                     SRR"
     gene            complement(2085..2795)
                     /locus_tag="VF788_07180"
     CDS             complement(2085..2795)
                     /locus_tag="VF788_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HEX8933962.1"
                     /translation="MVDRATFQAELDRLRVREKAHTREGDAISAARRRLPMVEVDPTI
                     TLIGPHGPLSLLEAFEGRRQLIAYYFMWHAGRPAPAQCEGCTWCTTQVAELSYLHSRD
                     VTYAVFCQGPYDESIRYRDFMGWDMPWYSAQDSADALLVGRHIGMMHLVCYVRDGDRV
                     FETYWTTYRGVEVMDYSYALMDLTVYGRQEPQEDSPPGWPQQWQVDGSNTRTNGRPIA
                     QWSRLNAGRSDDLGTAGR"
     gene            complement(3067..>3376)
                     /locus_tag="VF788_07185"
     CDS             complement(3067..>3376)
                     /locus_tag="VF788_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010235669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8933963.1"
                     /translation="IDPQWADTTVLSGDVAAAVGELKAKPGGELQVVGSLSLVRWLLD
                     NDLVDEITLFTYPVVVGQGARLFPDSGRDTALELVESRATTSGVTMQVYRTAGRPQYG
                     "
BASE COUNT          559 a         1090 c         1140 g          587 t
ORIGIN      
        1 ctatcagcac caacccggct accaggacca ccaatgtggc cagcccccgg ggtacgcgat
       61 gtccggtcag ccagtccacc accggcccca gcagcgcagt gagcagcagc gccacggcca
      121 ccgggatcac gacctgccgc agggcgatca ccacataacc caccaccacg gccatcccgg
      181 ccaccaccac cactcgccag gccagcgcag ccgccacccg cagtgggtaa ggcacggcgg
      241 cctcagcgtc acgcgcaccc cggctgtggt tcacaacgtc acgctatccg ctgcgcccag
      301 cgtggccgcg cgtcggcacc cggcgcactg gttccgcgtc agcggcgtga cacgaagacc
      361 gtgaggaagg gtgcgagtaa cccaagtacc gacgtcaaaa gcgctggggc tcgcgcattc
      421 aaggtgtctt tcccgcgcag ggaggtgaag tcgatcgcgg ttgtgggtac gccagcacca
      481 gcgagtacgt ccaaggcagc ctgggcgatg acgccgtatc cgctggttgt ggggtggacg
      541 ccgtcgagcc cgaatagacc cccttgctgg cggccgttct tatcggagag aaagaaccgg
      601 gtgtcaagat cagcgatggg ctcagggagg atgaagcgtt cccagtcgtt gcgcgcccgc
      661 gccgcggggt cctgaatgaa gcggcggaag ccgagcccgt cgagtacccc gcacaggtcg
      721 agcactagcc aatctcggcc ttcgcgacgg gcgtggcgga cggcatcggt gatggtttcg
      781 ttgaactgat cgatggctga atcaatcgcc cgcgcctgct ggtgcgtgag gtaacggtgc
      841 ttggccggat tgaagtcttt ctcctcgatc cacgggtcga tgtagtacgg gaagtaacgg
      901 taaccttctc gccacttctg cccggggtcc tgtgggttca cgcccttggc gatcggcgcg
      961 atcgtgacgt gcggcacggt ggccagcaca acgcgatggg ccgagatcga ccgtagggcc
     1021 ttcaccagtt cagcgtattc gacggcgaag tgaaccggcc gccacacgtt gtaggcgcct
     1081 ttgcggtcga gatcgtcgaa acccgcgtcc gaccatgtgg gttgcttgtc gacgacggag
     1141 cccagagcgt tgttagcacc gagcgcgacg accagtgtgc cgatgccacc gttgtcgcca
     1201 tgccattgcg cggccgcgat ctgggtggct gcgatgccga acggggcgag cacgctgctg
     1261 gcagcgatgt cgttgtcgtt ctcgggcttg gcaccccgta ggtcgtcgtg tggtgtgaga
     1321 gctgcccgct gcgccgcgcg cacggcggtg taggagatgg cgtcgcgcac atcccagccg
     1381 tagatgccga gattctcgta acggaggtcc actcggggca gctttcgacc atcaccgcgt
     1441 tcccagtaat cctcgttttc gtcgcatcgg cgttgcagga tcacgggcaa ctcgagcttt
     1501 tccaagaagt tgagttgatc accgaactgc tcctggagcc ggcgcagcag gccttccaga
     1561 ttgagcggta atccacccaa tggaccgccg tagctcggta ccgtaaagcc agggatgcca
     1621 aggccaccag ccactaatga aggccacgac aggtcagtcc ggaagacggc tccgctggtc
     1681 aggccgtggg taatcgaatc tccaacggtc accagaagat gatcgggaga cgctgccaga
     1741 ggcggggcat ccggtgacgg tggcccgagc ggctcaccca gcgtcgggtc atcgatgggc
     1801 gggcgcagcg tgtcggtgac gaccacatcc ggcggggtct tcgagtccag gtattccggc
     1861 ggaagttggg acatcagctg ccctccgtgg ggtccgtcag tgggatcgtt cgccgacttc
     1921 ggccttcatg atcagcgaac ttggtgagtg aaccgtacgc cgccgatcag ggatgtcggt
     1981 aagaaccgtg tcaggcgctg cgcaagccgt tggacccggc ggatcgcgat cgagatcgcc
     2041 acgcgacctt cgccgcccgc catcagacgg tgtggggctt ccgctcagcg cccggcggtg
     2101 ccgaggtcgt cggatcgtcc ggcgttcaga cgggaccact gggcgatggg gcgtccgtta
     2161 gtccgcgtgt tggagccgtc gacttgccac tgttgtggcc agccgggggg cgagtcctcc
     2221 tgcggctcct ggcgtccgta cacggtgagg tccatgagcg cgtagctgta gtccattacc
     2281 tctacgccgc ggtaggtcgt ccagtaggtt tcgaagaccc ggtcgccgtc ccgtacgtag
     2341 cacacgagat gcatcatgcc gatgtggcgc ccgacgagga gcgcgtcggc ggagtcttgc
     2401 gcggagtacc agggcatgtc ccagcccatg aagtcgcggt accggatgct ttcgtcgtag
     2461 ggaccctgac agaagaccgc gtaggtgacg tcgcgggaat gcaggtagga cagctccgcg
     2521 acctgggtgg tgcaccacgt gcagccttcg cactgggcgg gcgcgggtcg gccggcgtgc
     2581 cacatgaagt agtaggcgat gagctgtcgg cgcccttcga acgcttcgag caggctgagc
     2641 ggcccgtgtg ggccgatcag tgtgatggtg ggatccacct ccaccatcgg cagccgccga
     2701 cgggccgccg agatcgcgtc accttcccgg gtgtgcgcct tctcccgaac ccgcagcctg
     2761 tccagttcgg cctggaaggt ggcccggtcg accaccgccg gcaacgccgg gtgcgtcgtc
     2821 ggacatcgtg ccctgatggt cagtcatgcc cttctccaat cgtcggttcg ttcacttctc
     2881 ttcgagcgcg tcgggctgtg accggtctcc ctcagagagt tcagcgtatc tgtcccgttc
     2941 gacgatcggt cattgagtcg agacgcggca ccgctggcgg cccaccggac ggggtcagtc
     3001 ggtcgccgca gtcgtccggt tccctcgacg aggtgcctaa gtcacgcgct tcatgtcggg
     3061 cgtggcctac ccgtactgcg gacgcccggc ggtacggtag acctgcatcg tcaccccgct
     3121 ggtggtggcg cgcgactcca ccagctcgag cgccgtgtcc cggccggagt cggggaacag
     3181 ccgcgcgccc tggccgacca ccacggggta ggtgaacagg gtgatctcgt cgacgaggtc
     3241 gttgtcgagc agccaccgga ccaggctgag gctgccgacc acctgcagct cgccccccgg
     3301 cttggccttc agctcgccga cggcggccgc gacgtccccg gagaggacgg tcgtgtccgc
     3361 ccattgcggg tcgatg
//
LOCUS       DASVXZ010000347         1723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1202563, whole genome shotgun sequence.
ACCESSION   DASVXZ010000347 DASVXZ010000000
VERSION     DASVXZ010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1202563"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VF788_07190"
     CDS             <1..184
                     /locus_tag="VF788_07190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933964.1"
                     /translation="TWAGCGRKSGSSRGAAEISPGEAHGASRRGGVQSRAHIAGSDDR
                     GGAVGWEALVVLARAG"
     gene            complement(333..1040)
                     /locus_tag="VF788_07195"
     CDS             complement(333..1040)
                     /locus_tag="VF788_07195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933965.1"
                     /translation="MATVSNGRVPSRAAQSALRPPGVMFTSLTEQLGNIRRWNEERHW
                     GFTAADLHSVDLTPRARDDALVVDLIAVYLADTTEHNGVQRTCHELWTVAAEQQPHSW
                     SWDWYRDKWEHRPKPVRLAEGLLHRIGIRRVTVDLGAHFVPGRHVRPSALRGPDSAHA
                     EVLAAAAHFPRWVRAMDGASVPYTWLPGYEVMIRGRPTPWRLPALSWSHLRKTMSLTA
                     AWLNHSFSGWAAPVCVS"
     gene            complement(1126..1605)
                     /locus_tag="VF788_07200"
     CDS             complement(1126..1605)
                     /locus_tag="VF788_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010697047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX8933966.1"
                     /translation="MIRTLILVRHAKSAWPPETPDALRPLAERGRRDAPAIGQWLRAH
                     IDTIDLVVYSPAVRAAQTWELAAAQLATTPSMRYDERIYAASAAELLAVVQELPEQAS
                     TAALVGHNPGLEDLLALLTGAEEPLKTSAIAVITTPVDWESARPDSWTLEILATPRG"
BASE COUNT          282 a          527 c          610 g          304 t
ORIGIN      
        1 tacgtgggcg ggttgtggtc gaaagtctgg aagcagtcgg ggtgcggcgg agatttcccc
       61 cggtgaagca cacggtgctt cccggcgtgg cggcgtccag agccgggcgc acatcgctgg
      121 atcggatgac cgtggcggtg cagtcggatg ggaggccctg gttgtcttgg cgcgggccgg
      181 atgaggccgt gcacccggcg gcgagcagca cgctcagccc gatgggccag actgacggtg
      241 ttggataccc ccgggactgt cactctgcca gaatagatgc ccttctgatc cggtggtggc
      301 aagaagtagt gatcagcagc gtttcgtcac cgtcagctca cacagaccgg tgcggcccaa
      361 ccgctgaagg agtggttcag ccaagcggcg gtcaggctca tggtcttgcg caggtggctc
      421 cagctcaggg ccggcaggcg ccacggggtc gggcgtcccc ggatcatcac ctcgtagcca
      481 ggaagccagg tgtagggcac cgaggcgccg tccatagccc ggacccagcg tgggaaatgt
      541 gcggcggcgg cgagaacctc ggcgtgcgcc gagtcggggc ctcgtaaggc actgggtcgg
      601 acgtggcgtc ccggcacgaa gtgcgcaccg agatcgacgg ttacccgccg gataccaatg
      661 cggtgcagga ggccttcggc gagtcgcacc ggcttggggc ggtgttccca cttgtcgcgg
      721 taccaatccc aggaccagct gtggggctgc tgttcggcag cgacggtcca cagttcgtga
      781 caagttcgct ggacaccgtt gtgctcggtg gtgtcagcga gatagaccgc gatgagatcg
      841 acgacgagcg catcatccct ggcgcgaggc gtgagatcga ccgagtgcag gtcggcggcg
      901 gtgaagcccc aatgccgctc ctcgttccac cgtcggatgt tgccgagttg ctcggtgagc
      961 gaggtgaaca tgacccctgg cggtctgagc gcactctgcg ccgcgcgcga cggcacccgg
     1021 ccgttactca cggtggccat ttatccgctc gctttcccgt cgactgacct gtgaccagtg
     1081 atctaagcgc gagcgtacgg tttctgacac tgttcacgca tcccctcagc cgcgaggggt
     1141 tgccagtatc tccaatgtcc atgaatcggg gcgggccgat tcccaatcga ccggcgtcgt
     1201 gatgacggcg atggcggagg tcttgagcgg ctcttcggca ccagtcagca gagccaaaag
     1261 gtcctcgagg ccgggattgt ggcccactag agcggctgtc gatgcctgtt ccggaagctc
     1321 ttgaacgacc gctaaaagct ccgccgctga ggcggcatag atccgttcgt cgtaccgcat
     1381 gcttggcgtt gtggctaact gggcggccgc aagttcccag gtctgcgctg cccgaaccgc
     1441 gggggagtac accaccaggt cgatcgtgtc gatatgcgcg cgcagccatt gaccgatggc
     1501 tggggcatcg cggcgtccgc gttcggccag ggggcggagg gcatcgggag tctccggcgg
     1561 ccatgccgac ttcgcgtgcc ggaccaggat cagcgtgcgg atcatgtcat gccagggcga
     1621 gcgttcggag caccaaccgg gccgtgtcgc caccggactc ctctccgatt gcgagggcgg
     1681 ttggcacgtc gaggtcgtcc accagcgcag cgatgatcgc ctc
//
LOCUS       DASVXZ010000348         4516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1362881, whole genome shotgun sequence.
ACCESSION   DASVXZ010000348 DASVXZ010000000
VERSION     DASVXZ010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4516
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1362881"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>4516)
                     /locus_tag="VF788_07205"
     CDS             complement(<1..>4516)
                     /locus_tag="VF788_07205"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8933967.1"
                     /translation="WYSEPDTPVDQPPPIGRPIANTQVFVLDSRLRPVPVGVMGELYL
                     AGAGLARGYLHRPGLTAARFVANPFGAPGERMYRSGDLVRWSAAGELEYLGRVDEQVK
                     IRGFRIELGEIEVVLANHPGISEVVVTARDDQPPGLNSSGKRLVAYVVPADGVTPTSA
                     ELRAHLLQTLPDYMVPALFVALAELPLGPTGKLDRKALPAPDQPAEPVAEFVAPRTEI
                     ERILADIWAQVLRVERVGVEDNFFELGGDSILSIQVVSRARAAGVPVSTREVFSAQTV
                     SGLAAGVGLEPVSVPAGEVAGPAPLTPIQHWFFTTYGPLTHFNQSFVIELTEDLDRHA
                     LSAAVDAVVAQHPVLRMRFSQLEGQWRQEPVPTGGVVVERCELAGVAEADRPAVMKRA
                     AWAAQSGLDITEGPVLRVVLFETGPGSQPRLFLAAHHLVIDGVSWRILLGDLETAYQQ
                     ARAGGPIELEPVGTAFTQWAHRWVAHVQAGGLDEDLGYWSTLAQDVMSQDAVAHLPVT
                     GSGPNTAESARAVMVNLSRDETDALLHRVPGVYRTQINDVLLSALARVLAAWTGQQRV
                     LVALEGHGREEIVPGVDLSRTVGWFTSLFPVALRVEPAGWGELLKSVKEQLRAIPHRG
                     VSYGALRYLNPDSALGDALSPQISVNYLGQWDATTEADGLYRGWGEGLAPDQASESIR
                     PYLLDVIGAVADGQLQLSWTYSENIHERATIEDLAAQTVQALRAIVAHCAEPGAGGCT
                     PSDFPLARVSQAQLDALVGAGREVEDLYPLTPLQAGMVFHTLLDPGAAAYVDQTQLRV
                     SGIGDPETLGRAWQRVLERTPILRSAVVWEGIDEPVQIVHRQPSLPITHRDWRGHSEP
                     EQQLELARLAETERAAIDLGTPPLLRLVIARVSSDELVMMWTHHHVILDGWSIGAVFA
                     EVCEHYAAITQARAPELVARRPFRDYLHWLAEQDPQAAEQHWRTVLSGFDTRTVLPYD
                     RPPRQAHRSESTESLDTQLSSQDTIRLQQVAQQHGLTVNTLVQGAWATLLSRYSGQHD
                     VLFGTTVSGRPAELPGVESMVGMFINTIPSRVHLEETQDLVSWLRELQTAQIDSRRFD
                     FCSLAQIQAYSQLPPGSALFDSMVIFENYPFDSATITHAGLHIHHAQLHETTNYPLTL
                     QAFLSEHLRLRLAYDPHLFDASTVQRILGHLHVLLDGITTHPDQPLAHLPLLTQDEHR
                     QLMVDWNDTHAPVPATTLAELFTAQVRRTPDAVALVVEGDALTYSELDERVNRLARVL
                     IGRGVGPEQFVGLVLPRSAELIVALLAVTKAGAAYLPIDPSYPPARIGFMCADANPVI
                     VLCTQHSAGCLPDGVDRLVIDDPWTSQQIAVQPGNEVTDADRVAPLSPAHPAYAIYTS
                     GSTGIPKGVVVAQHSVVDLVGWAAGEFGLPDLSRVVASTSLSFDVSVFEIFCPLLVGG
                     CIELVRDVLVLGEPGADDRVASLISGVPSALSQGLALNGRVRADVVVLAGEALSVRVA
                     REIQAATSCRR"
BASE COUNT          855 a         1564 c         1395 g          702 t
ORIGIN      
        1 tccgccggca cgacgttgct gcctgaatct cccgagccac ccgaaccgaa agagcctccc
       61 cggccaacac caccacgtcg gcccgcaccc gaccgttcag agccaaaccc tgggataatg
      121 ccgagggcac cccactgatc aaactcgcta cccggtcatc cgccccgggc tcgcccagca
      181 cgagcacgtc acggaccaac tcgatgcagc cacccaccag caacgggcag aaaatttcga
      241 ataccgacac atcaaaagaa agcgacgtcg acgccactac tcgcgacaaa tccggcagcc
      301 cgaactctcc agccgcccat cccaccaaat ccaccacact gtgctgagcg accaccacgc
      361 ccttcggaat cccggtcgat cccgatgtgt agatcgcata cgcgggatga gcaggggaaa
      421 gtggtgccac gcggtcggcg tcggtaacct cgttcccagg ctggacagcg atctgctggc
      481 tagtccaggg atcatcaatc accaaacggt ccacaccatc cgggagacag cccgcgctgt
      541 gctgagtgca cagcacgatg accggattgg catcagcaca catgaaccca atgcgcgccg
      601 gcggataact cgggtcgatc ggcagatagg ccgcacccgc cttggtcacc gccaacaacg
      661 ccacaatcaa ctcggccgac cgcggcaaca ccagcccgac gaactgctcc gggcccactc
      721 ctcgcccgat caacacccgc gccaaccgat tcacccgctc atcgagctcg gaataagtca
      781 acgcgtcacc ctcgaccacc agggcgactg catctggggt gcggcggacc tgtgcggtga
      841 acaactccgc cagagtggtc gccggtaccg gagcgtgggt gtcgttccag tccaccatga
      901 gctggcggtg ttcatcctgg gtcagcaggg ggaggtgggc tagtggctgg tcggggtggg
      961 tggtgatgcc gtccagcagg acgtggaggt gtccgaggat gcgttggact gtcgaggcat
     1021 cgaacaggtg ggggtcatag gccaggcgga ggcggaggtg ttcgctgagg aaggcttgca
     1081 gggtgagggg gtagttggtc gtttcgtgga gttgggcatg atggatgtgc aggcccgcgt
     1141 gggtgatggt ggcggagtcg aaggggtagt tctcgaagat gaccatgctg tcgaacaggg
     1201 cgctgccggg gggtagctgg ctgtaggcct ggatttgcgc cagggaacag aaatcgaacc
     1261 gccgggagtc gatctgcgcg gtttgcagct cgcgcagcca ggacaccagg tcctgggtct
     1321 cctcgagatg gacccggctg gggatggtgt tgatgaacat gcccaccatg gactccacgc
     1381 cgggcagctc ggctggccgc ccggacacgg tggtcccgaa cagcacatcg tgttgaccgc
     1441 tgtagcggga gagcagcgtc gcccacgcgc cttggaccag ggtgttcacg gtcaggccgt
     1501 gctgctgggc gacctgctgc aaccggatgg tgtcctggct gctgagctgg gtgtcaagtg
     1561 attcggtgga ctccgaccgg tgcgcctggc gaggtggccg gtcgtagggc agcacggtgc
     1621 gggtgtcgaa cccggacagc acggtgcgcc aatgctgctc ggctgcctgg ggatcctgct
     1681 cggccagcca gtgcaggtag tcccggaacg ggcgtcgggc caccagctcg ggtgcgcgag
     1741 cctgggtgat cgccgcgtag tgctcgcaga cctcggcgaa caccgcgccg atgctccacc
     1801 cgtcgaggat cacgtggtga tgggtccaca tcatcacgag ctcgtcgctg gacactcgcg
     1861 cgatcaccaa ccgcagcagc ggtggggtac ccaggtcgat cgcggcccgt tcggtctcgg
     1921 cgagccgggc cagctccagc tgctgctctg gctcggagtg cccccgccag tcgcgatggg
     1981 tgatcggcag gctgggctgg cggtgcacga tctgcaccgg ttcatcaatg ccttcccaga
     2041 cgaccgcgct gcgcaggatc ggggtacgct ccagcacccg ctgccacgcc ctgcccagcg
     2101 tctcggggtc accgatcccg gagacccgaa gctgggtttg gtccacatag gccgccgcgc
     2161 cgggatcgag cagggtgtgg aaaaccatcc cggcctgcaa tggggtcagc gggtagaggt
     2221 cttccacctc ccgaccggca cccaccagcg catcgagctg ggcctgggac actcgggcaa
     2281 gggggaagtc agagggagtg caccctcccg caccgggctc ggcgcagtgc gccacgatcg
     2341 cccgcagcgc ctgcaccgtc tgggcggcca agtcctcaat ggtggcccgc tcgtgaatgt
     2401 tttccgagta cgtccagctc aactgcagct gaccgtcggc gactgccccg atcacgtcga
     2461 gcaggtaggg ccggatgctc tcggatgcct ggtccggcgc caagccctca ccccagcccc
     2521 gataaagccc gtcagcctcg gtcgtggcat cccactgacc cagatagttc acactgatct
     2581 gtggcgaaag ggcgtcaccc agcgcactat ccgggttcag gtaccgcaac gccccgtaac
     2641 tcacaccccg gtgtgggatg gcccgcaact gctccttcac cgacttgagc aactctcccc
     2701 agccggcggg ttccaccctc agtgccactg ggaacagcga ggtgaaccag cccactgtgc
     2761 gggacagatc caccccgggc acgatctctt cgcgaccgtg cccctccaga gcgaccagca
     2821 ctcgttgctg cccggtccag gcggcgagga cgcgagccag cgcgctgagc agcacgtcgt
     2881 tgatctgagt gcgatacacc cccggcaccc gatgcaacaa cgcatcggtc tcgtcccggc
     2941 tcaagttcac catgaccgcg cgggccgact cagcggtgtt gggtccagac ccggtcaccg
     3001 gcaagtgggc aaccgcgtcc tgagacatga cgtcctgggc cagcgtggac caatatccca
     3061 ggtcttcatc gagcccaccg gcctggacat gggccaccca ccggtgcgcc cattgcgtga
     3121 acgcggtgcc gacgggctcc agctcgatcg gccccccagc gcgagcctgc tggtaggcgg
     3181 tttcgaggtc acccaacagg atccgccagg acaccccatc tatcaccagg tggtgcgctg
     3241 cgaggaacaa ccggggttgt gaacccggcc cggtctcgaa gagcaccacc cgcaacaccg
     3301 gaccttcggt gatgtccaac ccggactgcg ctgcccacgc tgcccgcttc atcaccgctg
     3361 gccgatccgc ctccgccacc ccggccagct cacaacgctc caccaccaca ccaccggtcg
     3421 gtacaggctc ctggcgccac tggccctcaa gctgggagaa acgcatccgc agcaccgggt
     3481 gctgcgccac caccgcatcc accgcagccg ataatgcatg tctatcgagg tcctcggtca
     3541 actcaataac gaaggactgg ttgaaatgcg tcagcggtcc ataggtggtg aaaaaccagt
     3601 gctggatcgg cgtcaacggc gccggacccg cgacctcacc ggccggcacc gagaccggtt
     3661 ccaatcccac acccgcagca agacccgaca ccgtttgagc ggagaacacc tctcgcgtgc
     3721 tgaccggcac tcccgctgcg cgggcccggg ataccacctg aatgctcagg atcgagtctc
     3781 cgccgagctc gaagaaattg tcttcgacac cgacccgttc cacccgcagc acctgcgccc
     3841 aaatatcagc aagaatgcgc tcgatctccg tccggggggc cacaaattcc gccaccggct
     3901 cagcgggctg atccggagca ggcaacgcct tacggtccag tttccccgtc ggacccaggg
     3961 gaagttccgc aagtgcgacg aataatgcgg gcaccatgta atccggcagg gtctgcaaga
     4021 gatgcgcgcg caactccgcg ctggtcggcg ttacgccatc agcgggcacc acatacgcca
     4081 ccagccgctt gccgctgctg ttgagacctg ggggctggtc atcccgggcg gtcaccacga
     4141 cctcacttat cccggggtgg ttggctagca cgacctcgat ttcacccaat tcgatccgga
     4201 aaccccgaat cttgacctgc tcatcaaccc ggcccagata ctccaactct ccagcggcgc
     4261 tccagcgcac cagatccccg ctgcgataca tccgctcacc cggtgcacca aatgggttag
     4321 ccacaaaccg cgccgcggtc agtccggggc ggtgcaggta accccgggcc agcccagctc
     4381 cagcgaggta caactccccc atcaccccga ccggcaccgg ccgtaaccgg gaatccagca
     4441 caaagacctg ggtattggcg atcggacgcc cgatcggggg tggctgatca accggtgtgt
     4501 ccggctcgga atacca
//
LOCUS       DASVXZ010000349         3396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_306322, whole genome shotgun sequence.
ACCESSION   DASVXZ010000349 DASVXZ010000000
VERSION     DASVXZ010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306322"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..851
                     /locus_tag="VF788_07210"
                     /pseudo
     CDS             96..851
                     /locus_tag="VF788_07210"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            complement(1011..1083)
                     /locus_tag="VF788_07215"
     tRNA            complement(1011..1083)
                     /locus_tag="VF788_07215"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1048..1050),aa:Lys,seq:ttt)
     gene            1624..1908
                     /locus_tag="VF788_07220"
     CDS             1624..1908
                     /locus_tag="VF788_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933968.1"
                     /translation="MRTFLAGLEVALNEYGDNLSGWWTGLIIGLVVVVVVVVVVSVLL
                     VLAARINAHARAATRELEGAQPTTQPLAELARTNATLQSILRSARAARQA"
     gene            1920..2195
                     /locus_tag="VF788_07225"
     CDS             1920..2195
                     /locus_tag="VF788_07225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933969.1"
                     /translation="MTLALSAQETTFWQVILVIGAIVLVAVIALLTLLLSLVRSIEGT
                     VYRLGDVAQGIAGNTANIKVALAVADSLDEIMDEMRNHARLLGVGAR"
     gene            2192..2545
                     /locus_tag="VF788_07230"
     CDS             2192..2545
                     /locus_tag="VF788_07230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933970.1"
                     /translation="MSPTLLVVLTVIEIVALVAVLALFVIWITRRLRSIADALGQVSG
                     VAIGAIQGDVFLVGAGAAILNRKLNAIAGALPAIAEKAESLPSQTHAHIPQQTQAQNS
                     WRPAVSQQDPMIQRG"
     gene            2561..2809
                     /locus_tag="VF788_07235"
     CDS             2561..2809
                     /locus_tag="VF788_07235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933971.1"
                     /translation="MALWWIGNAIFIFVVIPVVVVLLQRLAGSAVEVGRRVDTIHDQA
                     GGIVIAVDDVKALVPTRDAVRKVGAGLTRYVKAVDRLL"
     gene            2822..3058
                     /locus_tag="VF788_07240"
     CDS             2822..3058
                     /locus_tag="VF788_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933972.1"
                     /translation="MPAAAIVTIILAALTVLVLAAYLIRIALVLRRVDAKLQAVTAGL
                     HLVPERTEPVGSIIGEINNDLAGVDKALRAVLAK"
BASE COUNT          625 a         1085 c         1079 g          607 t
ORIGIN      
        1 agcctgccgg ggtgagagga aagtgcggga tttcgactcg caggcgccgc cggcgacccg
       61 gtgatcggtc actggtatca cccatcggag gaaacatgac cagcgcgact actcctcttt
      121 ccacccagcg cgaaccggaa ctggtcgggc agaccgtcgt cgtgatcggc ggcagcgcag
      181 gcatcgggct cgagacggct cgacgtgccc gggctgaggg cgccgatgtc atcctcaccg
      241 gccgcaatcc cgaccggctc aagcaagcgg cgctggaact cggcgtgcaa cgcaccgcgg
      301 ccttcgacgc caatgacgcg gcttccctgg agaggttctt tcaggatttg ccaacaccga
      361 tcgatcatgt gatggttacg gctggcggcc cgcgatacgg gcccctgctg gagatggact
      421 cagctcaggt gcgtcaggcg agcaccagca cgcggtgctg gtgctcgatg tcgcgcgcaa
      481 cgccgccggc aagatgaggc ctgagggcag gctgctgctc atgggcggca ccggcggctg
      541 gcgcatcggt cacggcctcg ggatcgcctc cgcccaccgc tgcgctgcct ccgttcacgg
      601 cggccctcgc gcttgagctc gcgccggttc gcgtcaacct catcgccgca ggcttcgtcg
      661 acaccccgtt gtcggcatcg ttgctcggag atcaactcga ggagcgccgg aatgagctgc
      721 ggacgacgct cccgatcggc cgcgtcgtca cccccgccga cgtcgccacg ctcgccgtcc
      781 acatcatgac cgacacggcg ctcaccagcg cggcgtacga catcgacggt gggcagcagt
      841 tcgtctcatg aacacacgac cctgaacgga ggccgagacg gagcaagaag cagccgagtg
      901 cgagcgggat atccgtccac tgttccacga ggacgccagc tcgatgccaa tggcgttaga
      961 tctcgcgtcc tacaacgacg tgcgtaccaa cgccgagacc tgggattttg tgggccgcct
     1021 ggggatcgaa cccagaaccc aaggattaaa agtcctttgc tctgccagtt gagctaacgg
     1081 ccccgcgcgc tgatggtagc caaacgcgac atcacggctg gtggtaggta ggcgctacag
     1141 catcagcatc gagcaggtgg cgatcctcgt agggatgtgg ggtccggcgc aggcgacgca
     1201 gctctggctg tggctggctg gccatgcgga gttgtcgggt gggcatcgcg cgccgcgccg
     1261 actgggtagg tgccggcgta cgcgcgctac tgataacgag gaggccgtca ggttaagcac
     1321 gccgcccagg tcgcccacgc accccgacgc ggaactggtc ctgtcgctga gggccggact
     1381 cgcggttagc caggacaggt gcgtcacaat agccccacca gtcacgccag tcacgcgcgc
     1441 gggatctttc tccacgttct ccgactccgg gcgccacccg ctccccgctc tcatattgcc
     1501 acttacctta gctcgtgatc gagggtaaac tccctgtaaa ccccaattcc gctgcttagc
     1561 cgacccacgc aagctagtta cgtggccaat agggaaaagg tcgcgtaccg agcttgatcg
     1621 agcgtgagaa cgtttctcgc aggcctggag gtcgcattga atgagtacgg agataacctc
     1681 agtggctggt ggactggcct gatcatcgga ttggtggtcg tggtagtcgt ggtggtcgtg
     1741 gtaagcgtgc tcctggtgct tgccgcccgg atcaacgcgc acgcacgcgc agcgactcgt
     1801 gagctcgagg gggcacagcc gaccacgcaa ccgctcgcag aattggcccg cacgaacgcc
     1861 acgctccaga gcatcctccg gagcgctcgg gccgcccgac aagcataggg gggataacga
     1921 tgaccttagc tctctccgcc caggagacca cgttctggca ggtaatcctg gttatcgggg
     1981 cgatcgtgct agttgccgtg atcgcgctgc tcactttgct cctctccctt gtccgttcca
     2041 tcgaaggcac cgtgtaccga ctgggcgacg tggcgcaggg aattgccggc aacacggcca
     2101 acatcaaggt cgcgctcgcc gtcgcagaca gtctggatga gatcatggac gagatgcgca
     2161 accacgctcg acttctgggg gtgggcgcgc gatgagcccg acactgctcg tagtcctcac
     2221 cgtcatcgag atcgtggcct tggtggctgt gctggcgctg ttcgttatct ggatcacccg
     2281 ccggctgcgc tccatcgccg acgccctcgg gcaggtgagt ggggtagcca tcggggcgat
     2341 ccaaggggac gtgttcctgg ttggcgccgg cgccgcgatc ctgaaccgga agctgaacgc
     2401 gatcgccggc gcgctgccgg caatcgcgga gaaggctgag tcgctgcctt cgcagaccca
     2461 tgcccacatc ccgcagcaga cgcaggccca gaactcctgg cgacccgcag tatctcagca
     2521 ggaccccatg atacagcgag ggtaagacaa ggaggcgatg atggcactgt ggtggatcgg
     2581 caacgcaatc tttatcttcg tggtcatacc cgtcgtggtg gtactcctgc agcgcctggc
     2641 gggatccgcc gtcgaggtcg gtagacgcgt tgacaccatt cacgatcagg ccgggggcat
     2701 cgtcatcgca gtcgacgatg tgaaggcgct ggtacccacc cgggacgctg tgagaaaggt
     2761 gggggctggc ctcacccgct atgtgaaggc ggttgaccgc ctcctgtgag gagcgattac
     2821 catgccggca gcagctatag tcacgatcat cctcgcagcg ctcaccgtgc tggtgctcgc
     2881 tgcctatctg atcagaattg cgctcgttct ccggcgcgtc gacgccaagc tccaggcagt
     2941 caccgcaggc ctccacctgg ttcccgagag gaccgagcca gtcggatcga tcatcgggga
     3001 gattaacaac gaccttgccg gagtggacaa agccttgcgg gccgtgctgg ccaaataaca
     3061 aggagcgtcg ttttcggcat ccgcatcctt caacgtcgac tacggcgcac gcatccgcag
     3121 ctgctatgag ggctgggtcg cctaccttcc tggcgaccca gcaatcagta gcttctctcg
     3181 ccaagtatct gcgggaggag caccatgcac gtatgggaaa aatttcaatt agtcatcaat
     3241 gttatctaat gggcacatgc gagagactat ctgaacagcc agggatcgtt cgcaccttga
     3301 tgcaccgccg attcacagtt gttatcgtca ccgccgtcgc ggcgctgatg cccaccgcgt
     3361 gcgcgtacaa gggcctcagc atgcccgcgg taacgg
//
LOCUS       DASVXZ010000350         1757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_127574, whole genome shotgun sequence.
ACCESSION   DASVXZ010000350 DASVXZ010000000
VERSION     DASVXZ010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127574"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            309..1562
                     /locus_tag="VF788_07245"
     CDS             309..1562
                     /locus_tag="VF788_07245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEX8933973.1"
                     /translation="MRTTRVWRGVLGVEHTVIESVELESDGRGGEVLIAAVRPKAGAA
                     RRCSRCQRRCPGYDTSPTPRRWRGLDLGTTQVYLQGRTRRVSCPEHGVVVAAVPWARP
                     GSRFTAAFEDTCAWLVCHAALSVVAILLRVAWRSVSDIIARVVAERAGQLDRLAGLRR
                     IGIDEISYRKGQRYLLVVVDHNSGRLVWAGKNRTKQTLGRFFDDLGADRAAQLTHVSA
                     DGAEWIHDVVTLRAPKALVCLDAFHVVAWATEALDNVRRQMVNRLRAGGHHDEAAAMK
                     GSRWALLKNPPNLTGDQRTTLASIAKANGGLYRAYLLKEQLREIFTCRDSAVARALLT
                     GWIAWAQRCRLEPFVNLAKTIKRYRQLILNAVDHTLSNARSEATNTHLRLLTRRAYGY
                     RSPDSLIAMAELTRGGLCPPLPGRS"
     gene            complement(1566..>1757)
                     /locus_tag="VF788_07250"
     CDS             complement(1566..>1757)
                     /locus_tag="VF788_07250"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8933974.1"
                     /translation="LLPQENGRPLDRRTVTRLINKAAVSAGLGHIHPHQLRHTLATLD
                     RPGDSVDSALRGSTDVSVG"
BASE COUNT          284 a          597 c          582 g          294 t
ORIGIN      
        1 tgcgtgtaat gcagatacgg cgcgttgggg gcgaccggtg ttggatacgc gtactgcggc
       61 ttctcgttgt accaaaactg cactcccgca tcgactgtgc cgaagtcggc aatgttctcg
      121 ccttgtcctg acccccacga cccgctgtgg cgttcagaat gctttgcagg tccgatgata
      181 ttcgcccaac cctgcgcggc actactgacg ttcccgtggg tgccatttca tgatcgagta
      241 gggcgcacgc cgtccctgtc tagggtttct ggcctaccac agtcagagac gatcaagacg
      301 ggaatggcgt gcgcacgacg agggtatggc gaggtgtgct cggagtcgag cacacggtga
      361 tcgagtcggt ggagctggag tcggatggcc gcggcgggga ggtactcatc gccgcggtgc
      421 ggccgaaggc cggagcagcc cggcgatgct cacgctgtca gcgtcgctgc ccgggttatg
      481 acaccagccc gacgccgcgc cgctggcgag gtctggatct cggcacgacg caggtgtacc
      541 tgcagggcag gactcgtcgg gtgtcgtgtc ccgagcatgg ggtggtggtc gccgcggtgc
      601 cctgggcgcg gcccgggtcg cggttcaccg ccgcgttcga ggacacctgc gcgtggctgg
      661 tctgccacgc tgcgctgtcg gtggtggcga tcttgttgcg ggtcgcgtgg cgctcggtgt
      721 ccgacatcat cgcccgggtg gtcgccgagc gggccgggca gctcgaccgc ctcgccgggt
      781 tgcgccggat cgggatcgac gagatctcct accgcaaggg ccagcgctac ctgctggtcg
      841 tcgttgatca caactcgggt cgcctggtgt gggccgggaa gaaccgcaca aagcagaccc
      901 tgggccggtt cttcgatgac ctcggcgccg accgggccgc acagctcacc cacgtctccg
      961 ctgacggagc ggagtggatc cacgacgtcg tcacgcttcg cgcccccaag gcgctggtgt
     1021 gcctggacgc cttccacgtc gtcgcctggg ccaccgaggc cctggacaac gtccgccgcc
     1081 agatggtcaa ccggctgcgc gcaggcgggc accacgacga ggccgccgcc atgaagggca
     1141 gccggtgggc gcttctgaaa aacccgccga acctgaccgg tgaccagcgc accaccctcg
     1201 cctcgatcgc caaagccaac ggcgggctct accgcgccta cctgctcaaa gaacaactac
     1261 gggagatctt cacctgccga gactcggccg tggcccgagc actgctgacc ggctggatcg
     1321 cctgggctca acggtgccgc ctcgaaccct tcgtcaatct cgccaagacg atcaagcgct
     1381 accggcagct gatcctcaac gccgtcgacc acaccctgtc caacgcccgg tccgaggcca
     1441 ccaacaccca cctgcgcctg ctgacccgcc gcgcctacgg ctaccgcagc cccgactcgc
     1501 tgatcgccat ggccgaactc acccgcggcg gactctgccc acctctcccc ggacgatcat
     1561 gaggatcaac ccacggaaac gtcagtagag cccctcaaag ccgagtctac ggaatcgccg
     1621 gggcggtcca gcgtggcaag ggtgtgccgt agttggtgtg gatggatgtg gcccagcccg
     1681 gcggagaccg ccgccttgtt gattaagcgg gtgacggtgc gccggtccag cggacgaccg
     1741 ttttcttggg gcagcaa
//
LOCUS       DASVXZ010000351         4654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_306524, whole genome shotgun sequence.
ACCESSION   DASVXZ010000351 DASVXZ010000000
VERSION     DASVXZ010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4654
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306524"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..237)
                     /locus_tag="VF788_07255"
     CDS             complement(<1..237)
                     /locus_tag="VF788_07255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019049467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEX8933975.1"
                     /translation="MAAADSIRVALSTASVWPESISVAFELAAELGYDGVEVMVWVDP
                     ASQDTAAVAALAARYRMPVLALHAPCLLITQRVWA"
     gene            complement(241..624)
                     /locus_tag="VF788_07260"
     CDS             complement(241..624)
                     /locus_tag="VF788_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933976.1"
                     /translation="MSAPPASAQPPAGLGTATRAVAEQNANTDFDHDIEDAESASPLW
                     EWAAMVSQIGIGVVGGATLWLICEWLWQRIPVLALVVALAVITGLVWIVRRVRRAEDL
                     QTTVIAVLVGLFVTVSPAALLLVGR"
     gene            complement(1159..2169)
                     /locus_tag="VF788_07265"
     CDS             complement(1159..2169)
                     /locus_tag="VF788_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005453025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HEX8933977.1"
                     /translation="MRLGVLDVGSNTVHLLVVDAHHGAHPLPQISEKSVLRLAEQMDS
                     RGKITREGADHLIRTVRDAVASASAMGCEDLMAFATSAVRDASNAGAVLRRVHAETGV
                     KLAVLSGEEEAIFTFLAVRRWCGWSAGRVLMVDVGGGSLEIASGMDEEPEVAVSLPLG
                     AGRLTRSWLSHDPPRRRELEALHEHIVDQLEKPARKLLEPGVPDRVVGTSKTIRSLAR
                     LSGAAPSSAGPRVRRTLTDAGLRQVIAFISRMSAEDLAELEGVSASRSHQLVAGALVV
                     QAAMRALNVEEMDLCPWALREGVILRQLDLLDGLAGIDRTAQLTCRPTRRTGRAAVRG
                     AR"
     gene            complement(2198..2902)
                     /locus_tag="VF788_07270"
     CDS             complement(2198..2902)
                     /locus_tag="VF788_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013222396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933978.1"
                     /translation="MIRVLIVEDEEDFADPLAFLLRKEGFSPAVAATGSEALEEFDRN
                     GADIVLLDLMLPGMSGTDVCKQLRARSAVPVIMVTARDSEIDKVVGLELGADDYVTKP
                     YSARELIARIRAVLRRGAEGADGQVSSVATLGPSVLEAGPVRMDVERHIVTVAGQEVG
                     LPLKEFDLLEYLLRNVGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEQDPSS
                     PRHLLTVRGLGYKYDT"
     gene            complement(2899..4080)
                     /locus_tag="VF788_07275"
     CDS             complement(2899..4080)
                     /locus_tag="VF788_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8933979.1"
                     /translation="MTVAAVVFIATGTLIIGLVAGILISRRAGRSAIQSSPDGATVAD
                     LVQRVVLSSHNGVVLLDRSGDVVLANPPAVELGLVVGSRPDERARAAAEQVRASGEVV
                     HVDLSPLERGGRAGRGPTAVRGEVRPLGDEFTVIDASDESDAVRLEATRRDFVANVSH
                     ELKTPVGAMALLAEAVLDAADDPHEVRRFGTKILNEANRLGTLVTELIALSRLQGAER
                     LPELGTIPVDHIVRQALERCRLAAESANIRITADPPSGLLLHGDATLLITALSNLLDN
                     AVSYSPPGSPVSISRRLDEGYVEIAVTDRGLGIEPEHHDRVFERFFRIDQARSRSTGG
                     TGLGLAIVKHVAANHGGDVQLWSKPGTGSTFTLRIPAHPDNPPAALRPLATPEYVGGS
                     P"
     gene            complement(4226..>4654)
                     /locus_tag="VF788_07280"
     CDS             complement(4226..>4654)
                     /locus_tag="VF788_07280"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020419576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004619 - phosphoglycerate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HEX8933980.1"
                     /translation="VREEYGDEQFAVWRRSYDTPPPPIAPGSEFSQDGDPRYAKSPTT
                     ECLADVIARMLPYWESSIVPDLRAGRTVLVAAHGNSLRALVKYLDGIDEQTIVGVNIP
                     TGIPLRYDLDDQLRPCTPGGAYLDPDAASDAIAMVAQQGR"
BASE COUNT          800 a         1571 c         1563 g          720 t
ORIGIN      
        1 cgcccatacc cgctgcgtga tcagcaagca gggagcgtgt aaggcaagca ccggcatccg
       61 gtaacgcgcc gccaacgccg cgacggctgc agtgtcctgg ctggctggat cgacccagac
      121 catcacctca acaccgtcgt agccaagctc agcagccagc tcgaaggcca ccgagatcga
      181 ttcaggccac accgaggcgg tggaaagggc cacccggatc gagtcggccg cagccaccgg
      241 ctatcggccg acaagcagca gcgccgccgg ggagaccgtg acgaaaaggc cgacgagcac
      301 tgcgatcacc gtcgtctgca gatcctccgc gcgccgaacc cgtcgcacga tccagaccag
      361 cccggtgatc acagcaagtg ccacaacaag cgccagcacc gggatacgtt gccagagcca
      421 ctcacaaatc aaccacaacg tggcgccgcc gaccacaccg atcccgatct ggctgaccat
      481 cgcggcccat tcccacagtg gagaagccga ctcagcatcc tcgatgtcgt gatcgaagtc
      541 ggtgttcgcg ttctgctcag ctacggcccg ggtcgcggta cccagaccag ccggaggctg
      601 ggcacttgca ggtggcgcgc tcacgggtgg ggtgctcacc gcaggacggc tcggccagga
      661 cgtggggtag gcaggcaccg gatcaaaccg cggtagctgg tcagtgccag acccgtccgg
      721 aaacatggtt ctggtgagcg gcgcccgtct ggcgaccacc ggagacgcga gcggcgctct
      781 tgttgccgca gccggcggcg accccaccgc gggggcccag tcacggcggg ggccaccgcc
      841 cagactccgc tgggtcgatg tcgactcatt tcgagtcgta tcactcaggg tcggcgaact
      901 ccgcgtcggc tcagttcggg acgaaccctg acggacaggc gcgtccgtgg ccagcagcga
      961 gcctgacggt cggagagtcg gctcgcgacg gtcgattccg ttcggctggg cggcggtctc
     1021 cgcaattggg tcggcgtcat cggcggcgcg acgatgccgg cgcccagcgg tcggggccga
     1081 atcaccgtat cgggccagca gctcagccac ggtgaactgc gcccgctctt caggctcgct
     1141 actacgcctc atcgttgcct accgtgcacc tcggaccgcc gcgcgtccag tccgccgagt
     1201 tgggcggcag gtcagctgcg ccgtccggtc gattcccgct agcccgtcta gtaagtccag
     1261 ctgtcgcaag atgacacctt cccgcaacgc ccaggggcac agatccatct cctcgacgtt
     1321 cagagcacgc atcgcggcct ggaccacgag ggctccggcg acgagctggt gggaccggct
     1381 ggcgctgacg ccttccaatt cggccaggtc ctcggcactc atccgggaga tgaatgcgat
     1441 cacctggcgc agtccggcat cggtgagcgt ccgtcgaacc cgaggaccgg ccgaggacgg
     1501 cgcggcacca ctgagcctgg ccagcgaccg gatcgtcttc gaggtgccca ctacccggtc
     1561 cggaacgccg ggctcaagca gcttccgggc cggtttctcg agctgatcga caatgtgctc
     1621 gtgtaaggct tccagctcgc ggcggcgcgg cgggtcgtga ctcagccagg accgggtgag
     1681 ccgaccggcg cccaggggca gcgacaccgc cacctcgggc tcctcgtcca tcccgctggc
     1741 gatctccagt gaccccccgc cgacgtccac catcagcact cggccggccg accagccgca
     1801 ccatcggcgg accgccagga acgtgaagat cgcctcttcc tcgccggaga ggaccgccag
     1861 cttgaccccg gtctcagcgt gcacccgcct caacaccgcg ccggcgttgg aggcatcgcg
     1921 cacggctgag gtggcgaagg ccatcagatc ctcgcagccc atcgccgatg ccgacgcgac
     1981 ggcgtcgcgc acggtgcgga tcaggtgatc ggcaccctca cgggtgattt tcccgcgtga
     2041 gtccatctgc tcggcgagcc tcagcaccga tttctccgag atctggggca acgggtgggc
     2101 gccatgatgg gcgtccacca ccagcaggtg gacggtattg gaacccacgt cgagcacgcc
     2161 gagccgcatg agaggcgagg ctacgccggg ggcgaactca ggtgtcgtac ttgtagccaa
     2221 ggccgcggac ggtgagcagg tgcctgggtg aggaggggtc ctgctcgatc ttggagcgca
     2281 gtcgcttgac gtgcacgtcc agtgtcttgg tgtcgccgac gtagtccgct ccccagactc
     2341 gatcgatgag ctggccacgg gtgagcaccc ggcccacgtt gcgcaggaga tactccaaca
     2401 ggtcgaattc cttgagcggc aggcccacct cctgccccgc cacggtgacg atgtgccgct
     2461 cgacgtccat ccgaaccggt ccagcctcca acaccgaggg tccaagggta gccacgctgg
     2521 agacctgacc gtcggcgcct tccgcaccgc ggcgcagcac cgcacggatc cgcgcgatca
     2581 actcgcgggc tgagtacggc ttggtgacat agtcgtccgc gccgagctcc agccccacaa
     2641 ccttgtcgat ctcgctgtcc ctggcggtta ccatgatcac cggaaccgcg gaacgggcac
     2701 gcagttgctt gcagacgtcg gtgccgctca tcccgggcag catcaaatca agcagcacga
     2761 tgtcagcacc gttgcggtcg aactcctcca gtgcctctga gccggtggcg gccaccgccg
     2821 gggagaagcc ctccttgcgc agcaggaagg ccagcgggtc agcgaagtct tcctcgtctt
     2881 cgacgatcaa tactctgatc atggtgaccc tcccacgtat tcgggtgtgg ctagcgggcg
     2941 caacgctgct ggtgggttgt cggggtgggc ggggatgcgc agggtgaagg tggagccggt
     3001 gccgggtttg ctccagagtt ggacgtcgcc gccgtggttg gcggcgacgt gtttgacgat
     3061 ggccaggcct aggccggtgc cgccggtgga gcggctgcgg gcttggtcga tgcggaagaa
     3121 gcgttcgaag acgcggtcgt ggtgttcggg ctcgatgccc aggccgcggt cggtgacggc
     3181 gatttcgacg tagccctcat cgaggcggcg gctgatggag accggactgc cgggtgggga
     3241 gtaggacacg gcgttgtcga gcaggttgga cagagcggtg atcagcaggg tcgcgtcgcc
     3301 gtgcagcagc agcccggagg gagggtcggc ggtgatgcgg atgttggcgg attcagcggc
     3361 cagccggcag cgttccaggg cttggcgcac gatgtggtcg acgggaatgg tgcccagctc
     3421 ggggagtcgt tcggcacctt ggagccggga aagagcgatg agttcggtga ccagggtgcc
     3481 cagccggttg gcttcgttga ggattttggt gccgaagcgg cggacctcgt gggggtcatc
     3541 ggcggcgtcg agcaccgcct cggctagcag ggccatcgcc ccgacggggg ttttgagttc
     3601 gtggctgacg ttggccacga aatcccgccg ggtggcctcc agacggaccg cgtcggactc
     3661 gtccgaggcg tcgatcacgg tgaactcatc gcccaagggc cggacctcgc cccgcaccgc
     3721 ggtcggaccg cgtccggccc gcccaccccg ctccagcggg gacagatcga catgcaccac
     3781 ctcaccggag gcccggacct gctcagcagc cgcacgggcc cgctcatccg gccgggaccc
     3841 gaccaccagc cccaactcca ccgccggcgg attggccaac accacatcac cggaccggtc
     3901 cagcaacacc acaccgttgt gggaggagag caccacgcgc tgaaccagat cggcgacggt
     3961 cgctccgtcg ggcgacgact ggattgccga tctcccggca cgccggctga tcagaatgcc
     4021 ggccaccagc ccgattatca gcgtgccggt cgcgatgaaa acgacggctg caacggtcac
     4081 gccacaatcg taagcacctc aggagggtgt atccctagtc ccgacgcacc ccgagtcacc
     4141 agaactaccc acaatagggc gaatcttctt ccttcgttca ccctcggttc attcccggca
     4201 atcgggacgc gtctcgaccg acgggttacc gaccctgctg agcgaccatg gcgatggcgt
     4261 cagacgcggc atcgggatcg agataagcgc cgccaggagt gcacggccgc agctgatcgt
     4321 cgaggtcgta gcgcagcggg attcccgtgg ggatgttgac gccgacgatg gtctgctcgt
     4381 cgataccgtc caggtacttg accagggctc gcagcgagtt gccgtgggcg gccaccagca
     4441 cggtgcgccc ggcccgcaga tcgggcacga tcgaggattc ccagtacggc aacatccggg
     4501 cgatcacatc ggccaggcac tcggtggtcg gtgacttggc gtacctcggg tcaccgtcct
     4561 ggctgaattc gctgccgggc gctatcggcg gtggtggggt gtcgtaggag cgacgccaca
     4621 cggcgaactg ctcatcacca tactcctcgc gaac
//
LOCUS       DASVXZ010000352         2955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_664884, whole genome shotgun sequence.
ACCESSION   DASVXZ010000352 DASVXZ010000000
VERSION     DASVXZ010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_664884"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..495)
                     /locus_tag="VF788_07285"
     CDS             complement(142..495)
                     /locus_tag="VF788_07285"
                     /inference="COORDINATES: protein motif:HMM:NF039689.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6209 family protein"
                     /protein_id="HEX8933981.1"
                     /translation="MKFLSDWSQEQSGDIRPGESLSIEYAIERLPGCRASRYGRDAWS
                     ITAGMRFHPTGQEESGAVTAREQSGAVVAAPLTVGVPIDATRIELWFQNTDNTGCVAW
                     DSRYGQNYWFDVNSV"
     gene            complement(678..890)
                     /locus_tag="VF788_07290"
     CDS             complement(678..890)
                     /locus_tag="VF788_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017132437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEX8933982.1"
                     /translation="MSDRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKS
                     LKEGQTVSFVAEKGQKGMQAAQVRPE"
     gene            complement(1849..2283)
                     /locus_tag="VF788_07295"
     CDS             complement(1849..2283)
                     /locus_tag="VF788_07295"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8933983.1"
                     /translation="MARCSPLVRAGMIPTVEQRISLVTLGVTDLSRARSFYEALGWSG
                     AQQPDDEVCFFQSGGIVFGLWTALGGHGAPGVELAHNVRTPEEVGAVLIEAERAGGTI
                     VRPAARAEWGGTSGAFADPDGYVWEVAHNPGWTITEDGSIRI"
     gene            complement(2416..>2955)
                     /locus_tag="VF788_07300"
     CDS             complement(2416..>2955)
                     /locus_tag="VF788_07300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933984.1"
                     /translation="TNQSHSVSPVMTSTAHRHRLPSDQRIHHRKVPRRLTRKRGTVPP
                     CAAAHGKDPPEPVSAGMGKWRAGRTALARLADHICEPGWAPTLEPAAARVRTNLNALR
                     QLMHGRQTGEIPPAEDAVDAAEAYAARTPDPDRWAALLSAARLLRRIDQAVVRLATDL
                     GHPGEAIQPQTVAHPPRSL"
BASE COUNT          502 a          936 c          927 g          590 t
ORIGIN      
        1 gtgcccgctc cacatctgca gactcgttgt ctgaccagcc acttcggcgt ggcacggccg
       61 gtcatcagca tgatcggact tcggtgcagc gggtggcgac ggtctgccga tcatgaccgc
      121 aggtccctgc gtgagcttgt attaaactga attgacgtca aaccagtagt tctgtccgta
      181 tcgactatcc caagcaacac accccgtgtt gtcggtgttc tgaaaccata attcgattcg
      241 tgtcgcgtcg atgggcaccc ccactgttag cggcgccgct accaccgcgc cgctttgctc
      301 tcgggctgtc accgcaccgc tttcctcctg gccggtcggg tgaaagcgca taccggcggt
      361 aatgctccaa gcgtcccgtc cgtagcggct ggcgcggcag cccgggagcc gctcgatagc
      421 gtactcgatt gacagcgact ctcctggacg aatatcgccg ctctgctcct gcgaccaatc
      481 ggatagaaac ttcaagcttc ccacgcttac ccccagtagt agataaactt cttttccgtc
      541 agtcataaaa acggggacca actgcttctg ggcagcgtat cgtactccga agagttgaac
      601 aaatatctca acattaaaca acttggcagc ggctaggcca gccgtccagc tcggcgcggg
      661 gcccagctgt cagctggtca ttcgggccga acctgcgccg cctgcatgcc cttttgtccc
      721 ttctctgcga caaatgacac ggtctgtccc tccttgaggg acttgaaacc gtccgattcg
      781 atcgccttga agtgcacgaa gaggtcgtct cctccgcctt gaggagtgat gaaaccgaac
      841 cctttctcgt cgttaaacca cttcactgtc ccggtctgcc tatcggacat gtccgctcca
      901 ggagttcttg cgtctgacgc gtgaccatga caaccccgca gatctgatca tgccgcacac
      961 gaagcagcgt gtacaggagt gcctgcagac gtaggactag ccggtcatgc gcataaggcc
     1021 cgaccctgga caaattgcag gtagtcgcgg gatgctgcct gtgaccacgg atcagaaggc
     1081 cagttgccac gttctcgggc ttggagccag tcgcatggtg cacccgcggg tttgaatcct
     1141 ggccgatccc ccgttgggta ggcccaccgc cacgggcgag ggtctccgcg aggcaaccga
     1201 gccctagtgg tctcatcttt ggtctcgttc gtcctcgttc gcctacgttc attggtgttc
     1261 ggattaatgc ggcgatgcag gtcgcggacg taacggcatt cggcgaacta ttatcccgag
     1321 tcctgaaaat cggaaggtcg acggttcgac gccgccccgg ccacgtgcac cgtgggcctg
     1381 tagatcggca gctacaagga aggagggcac tgttgcgtcc gccgatggtg ggctcgggca
     1441 cgctgtgctg atgcttcgtc gccactcttg gctgccagct ccgcggtcca gcttcgctgg
     1501 cttccggttc ccgccggagg tgatcacagt ggctgtgcgc tggtacttgc gctatgggct
     1561 ctcgtaccgc gacatcgagg agttgctggc cgagcggggc atcgagatgg atcacgtgac
     1621 tgtttacggg ccgcattgat cagcagcgga gtgaaccgct gcacccaccg gtacacactc
     1681 acgcggcttg gcgaccttca taccccaccg gtcgacgcac ttgtcgagtt gcgccggtgc
     1741 accgcgtgcg cttcggctta cggttatggg tatcggttcc cgaagggtga ggagtcagat
     1801 cggcgagacc cagctggaat ggcgctcaca ggacagccgt cgcggacctc agatacggat
     1861 ggatccgtcc tcggtgatcg tccagccggg gttgtgggca acctcccaca cgtacccgtc
     1921 gggatcggcg aaagcaccgg aggttccgcc ccattccgcg cgagccgcgg gccgcacgat
     1981 ggtcccaccg gcgcgctcgg cttcgatgag cacggcccca acttcttcgg gggtccgcac
     2041 gttatgggca agctcgacgc ccggcgcgcc gtgaccacct agcgctgtcc ataacccgaa
     2101 gacaatgccg ccggactgaa aaaaacatac ctcgtcgtct ggttgttgag cgccactcca
     2161 gcccagcgcc tcgtaaaagg accgggcccg ggataagtcc gtgacgccaa gcgtcacaag
     2221 actgattcgc tgctccaccg tcgggatcat gccagcccgc acgaggggcg agcagcgtgc
     2281 cacttgagga tcccagtgca gtgcatgtct cacctcatct tcaagccaga gcatcgtcca
     2341 cggcgctggt ctcaactaca gcggctcgcc ggcgtgggca gcagtgcccg aactgtcgct
     2401 gctgtgccgc agcggtcaca gcgatcgtgg agggtgagca acggtctgtg gttgtatggc
     2461 ctcgccgggg tggccgaggt cggtcgccaa cctgacgacc gcctggtcga tgcggcgcag
     2521 cagccgggcc gcgctgagca gggcggccca acggtcgggg tcgggggtgc gggcggcgta
     2581 ggcctccgct gcgtcgacgg cgtcctcggc ggggggaatc tctccggtct ggcggccatg
     2641 catcagctgg cgcagcgcgt tgaggttggt tcggacgcgg gcggcggcgg gttcgagtgt
     2701 cggcgcccac cccggctcgc agatgtggtc ggcaagccga gccagagctg tccgtcccgc
     2761 acgccatttg cccatcccgg ctgacactgg ctcgggtggg tcctttccgt gggcagctgc
     2821 gcagggcggt accgtccccc gtttcctggt gagccttcgc ggtacttttc ggtgatggat
     2881 acgctggtcc gacggcaacc tgtgtcggtg cgcggtgctg gtcatgaccg gggaaacgct
     2941 gtgggattgg tttgt
//
LOCUS       DASVXZ010000353         4481 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1562198, whole genome shotgun sequence.
ACCESSION   DASVXZ010000353 DASVXZ010000000
VERSION     DASVXZ010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1562198"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..2060)
                     /locus_tag="VF788_07305"
     CDS             complement(87..2060)
                     /locus_tag="VF788_07305"
                     /inference="COORDINATES: protein motif:HMM:NF016070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8933985.1"
                     /translation="MTTANRLAWRTSSRSSNGENCVEVAPAADGVVIRHSKHPSTDTI
                     TFPGYAWRAFIHDARDGVANTNGVATITKIGTDTLVKSLHTTVALRFDAEEWSAFLVG
                     AADGEFDFTSQLAAAQSSAALVEPTSQFFATADIPYRATVNTASNGDLWASCWANDGA
                     LYSANGDGRGFSANAKDFADIVVNRITGTPPTGISGVRLSGGNQVGKIWTAGNYNRKP
                     TGMVAVDGNGDGRDELYLAVQDLCTGPGALVFNDAPAASVSVSTDYGRTWRTTNAPMF
                     TDHVFTTIFFLDFGQSNRNASVLGPGGTAYVYAYGLDNNWRDSFSNTVADPQNLYLAR
                     VPKGSIQNRASWQFFTGTDGSGAPTWSSDIGRRVAVLHDERREYPGTVTSDGCSVLSQ
                     GGVVYNAPLRRYLYTSWTEYTHEFYEAPNPWGPWKLFLHKDFGPYPWWGDGSAIGPKN
                     GGYATTLPSKFISADGRRMWMQCNWFVGLGGGSDNYKFSLRPLTVSPYQAGTPSNSGN
                     PAVNLARAGDAVPIDKTSHYGKLAYLNDGNPSASEDSWDGSPKDADRWGITWSRPYNV
                     DRVVYTTGAMFPDGGWFASGLTVQVRNNFVWTPVTGLAVNPAYPYDANAGPFRRFTLT
                     FANTSGDGVRIVGSPGGSAHFTSISELEVYFDG"
     gene            complement(2817..3422)
                     /locus_tag="VF788_07310"
     CDS             complement(2817..3422)
                     /locus_tag="VF788_07310"
                     /inference="COORDINATES: protein motif:HMM:NF026183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEX8933986.1"
                     /translation="MANQGCGYVAAPVFGRPDRAESAELIVLSAGASQERERARPLLE
                     AIGSVFELGDDPASANAVKLAGNFLLMSAMESMAEAFAFAEKHDVPRAWAAEMLTTTP
                     VMANGYRGYGAAIAAGKFSSPGFGLRLGHKDARLLLEAASALDVPMPVANLIMDRFTA
                     SVNKGRGTWTARRWRSRCSSQPAWSDPIAPNEFCWFYFGVP"
     gene            complement(3873..>4481)
                     /locus_tag="VF788_07315"
     CDS             complement(3873..>4481)
                     /locus_tag="VF788_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8933987.1"
                     /translation="VALSADWGFDEILLPTAGPAEVDARLRLLVARRVTEPGTGRPGA
                     LSLGELVIDEATYTVRLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYDFF
                     GGTRTVDVHVRRLRAKLGLEHEQLIGTVRNVGYKFVRPVRGISARDRAKQEHAVNAES
                     TDADRADRRSSRAASLQAIDSGPTGIAPAAASYLRVPKHQVT"
BASE COUNT          761 a         1459 c         1453 g          808 t
ORIGIN      
        1 cctgcgcagc gcccgctgaa ctggcgtcaa ttcgcggacg ccgagtcgcc gtgcctcgat
       61 acgtgggcgg gtgtcccagc atccgctcaa ccgtcgaagt agacctcgag ctcgctgatc
      121 gacgtgaagt gcgcgctgcc gcccgggctg ccgacgatgc ggacgccatc gccggaggtg
      181 ttggcgaagg tcagcgtgaa ccgtcggaag ggacccgcgt tggcgtcgta ggggtaggcg
      241 gggttgaccg cgaggccggt gacgggtgtc cagacgaagt tgttcctgac ctggacggtc
      301 aacccgctgg cgaaccagcc tccgtcaggg aacatcgctc cggtcgtgta gacgacccgg
      361 tcgacgttgt acggccttga ccacgtgatg ccccagcggt cggcatcctt gggcgagcca
      421 tcccagctgt cctcgctggc cgacggattg ccatcgttga gataggccag cttcccgtag
      481 tgggaggtct tgtcgatcgg taccgcgtcc ccggctcgtg ccaggttcac cgctgggttt
      541 cctgagttac tcggagtgcc cgcttgatag gggctgaccg tcagtggacg cagcgagaac
      601 ttgtagttgt cgctccctcc gccgagaccg acgaaccagt tgcactgcat ccacatccgc
      661 cggccgtcgg cgctgatgaa cttcgacggc agggtggtgg cgtacccgcc gttcttcggc
      721 ccaatggccg atccatcgcc ccaccatgga tatggcccga agtccttgtg caggaacagc
      781 ttccacgggc cccacggatt cggtgcctcg tagaactcgt gggtgtactc ggtccaggac
      841 gtgtagaggt agcggcgcag cggggcgttg tagacgacac cgccctgcga gaggaccgaa
      901 cagccgtccg aagttaccgt gcccggatat tcccgacgct cgtcatgcag caccgcgacc
      961 ctgcggccga tgtcactgct ccaggtgggg gcaccggagc cgtcggtgcc ggtgaagaac
     1021 tgccagctcg cgcggttctg aatagagcct ttcggtactc gtgccaaata gaggttctgc
     1081 ggatcagcaa cggtgttgct gaacgagtcg cgccagttgt tgtccagtcc ataggcgtag
     1141 acgtaggccg tgccgcccgg gccgagcacc gaagcgttgc ggttgctctg gccgaagtcg
     1201 aggaagaaga tcgtggtgaa gacgtggtcg gtgaacatcg gcgcattggt ggtccgccaa
     1261 gtcctgccgt agtcggtgga gaccgacacg ctcgcggccg gggcgtcgtt gaacacgagg
     1321 gcacccggtc cggtgcacag gtcctgtacg gccaggtaca gctcatcacg gccgtcgcca
     1381 ttgccgtcaa cggcgaccat tccagtgggc ttgcggttgt agttgccggc ggtccagatc
     1441 tttcccacct ggttcccacc gctgagccgg acgccgctga tgccggtcgg tggagtaccg
     1501 gtgatcctgt tcacgacgat gtcggcgaag tccttcgcgt tcgctgagaa gccgcggcca
     1561 tccccgttgg ccgagtagag cgcgccatcg ttagcccagc agcttgccca gaggtcgccg
     1621 ttactggcgg tgttgacggt ggcccgatat ggaatatcgg ccgtagcgaa gaactggctg
     1681 gtgggctcga ccaatgcggc ggaactctgt gctgccgcga gttggctggt gaagtcgaat
     1741 tcgccgtcgg cggctccgac gaggaaggca gaccactcct ctgcgtcgaa gcgcagcgcg
     1801 actgtggtgt ggagtgactt cacgagggtg tcggtgccga tcttggtgat ggtggctacg
     1861 ccgttcgtgt tcgctacacc atcgcgagcg tcatggatga acgccctcca tgcgtagccg
     1921 gggaaggtga tcgtgtcggt ggaggggtgc ttgctgtgtc ggatcaccac gccgtctgct
     1981 gccggggcca cctcgacaca gttctcgccg ttactgctgc ggctggaggt ccgccacgcg
     2041 aggcggttgg cggtggtcat ctcagtcctc ccaactcgtc taaggtcgag cagcatacgc
     2101 cccgacctga tcttgatcct ggatatagat gacaccaggg ggtactcgat catcggcgga
     2161 aacacgcagg tttgcctacg agaagcgcgg cggctgcagt tggcccggca gcagtagtct
     2221 catcggcgtc gacggccgac cgagccaagg atcgaaaacg gcacgaacgg agcacaaaac
     2281 gccgggccat ccagcagcgc gtccaccgcg ccagctcctc cggtcgagcg gttcagccgc
     2341 aagttaagca ttcggtgcgg tggttatttc tggccgcctc tacccggtga agggcgttgg
     2401 gtgacgtctg tggcaatcct gcgcacgcgt tcgggttgag cctgagcacg cgggatggtc
     2461 cgtccagctg cgtggagccg gctcacggtg gcgagcaggt cgcgtatctc gggggaccaa
     2521 tggaattcgt ctgtggggat gtgccactcc caggaaccga cgcagatttg ttcgtcctcg
     2581 gggcgcgcgt cgctgatgtc gacgccaatg gtcatagacc cggacgccac ccaggatacg
     2641 cgcggcctgt cggatagcca tggcgcgcaa gccctgaagc cacgaccggg agatctcaac
     2701 cggcgcttcg cgcgccccac ctacgccatc tccaccgctg acttcaccag ccgcaagctc
     2761 acgtccctat ataacctcct ccacggtaga tccacatcat cagcagagtc cgtcacctag
     2821 ggcacgccga agtagaacca acagaattcg ttcggtgcga tcgggtcact ccaagccggc
     2881 tgactcgaac acctcgatcg ccagcgccga gcagtccagg tccctcgacc cttgttgacc
     2941 gacgcggtga agcggtccat gatcaggttg gcgaccggca tcggcacatc cagagccgat
     3001 gcggcctcta acagcaaccg cgcgtcctta tgacccagcc gcaggccgaa tccaggcgag
     3061 ctgaacttcc cggcggcgat ggcggcgccg taacccctgt agccgttcgc catcaccgga
     3121 gtcgtcgtca acatctccgc agcccacgcc cgtggcacgt cgtgcttctc ggcgaacgca
     3181 aacgcctcag ccatcgactc catcgcactc atcagcagga agttgccggc cagcttgacc
     3241 gcgttcgcgc tggccggatc gtcacctaat tcgaacaccg agccaatcgc ctccaacaac
     3301 ggcctggcgc gctcacgctc ctgcgacgct cccgctgaca gcacgatcaa ttcggcggat
     3361 tcggcccgat ccggccggcc gaacaccggt gcggcgacgt acccgcagcc ttggttggcc
     3421 agtcaagtgc tggtcgtcgg cgcgatggtg ctcagagaga tatgcagccc gtccgcaccg
     3481 agcttgtccg ccagcccggc agtggcttgc cactaccgcg tgatcatcgg caagcatgct
     3541 cagtggccat atccgcggtg gcgtgggcat ggtcaatggt ggtgtccgca gtgtcgccgg
     3601 ccggacgagg gcctgggtcg tcccgagcgt cgacgatcag ctggccgttt ctcatcttag
     3661 tggattcagt ctgagggcca tgtatctgat cccctgggcg cctcggcggg gattgtggaa
     3721 aagccatcca cttcctacgt tcccaccgcc ggcgcagtgc gcaagcgttg tggtgctgtg
     3781 cttccacgac cgggtaccga cggatcagcg gccgatcaac gcagattgcc tgacgtgccc
     3841 ccccgcagct tcggctactg cccacgaccc ggtcaggtca cttggtgctt aggcaccctc
     3901 aggtaactcg ccgctgccgg tgcgatgccg gtggggccgc tgtcgatggc ctgcagggag
     3961 gccgcccgtg aggatctacg gtcggcccga tctgcgtcgg tgctctccgc gttaaccgcg
     4021 tgctcctgtt tagcccggtc ccgggcactt atgccccgca ccgggcggac gaacttgtaa
     4081 cccacgttgc ggaccgtgcc gatgagctgc tcgtgctcca gaccgagctt ggcccgcagc
     4141 cgccgcacat ggacatcgac ggtgcgggtg ccgccgaaga aatcatagcc ccacacctcc
     4201 tgcagcaact gcgcccgggt gaacacccgc ccggcgtgct gcgcgaggta cttgagcagc
     4261 tcgaactcct tataggtcag atccagcggc cggccgcgca gccggacggt gtaggtcgcc
     4321 tcatcgatca ccagctcacc caacgacagg gcgccggggc ggccggtgcc cggctcggtg
     4381 acgcgccggg cgaccagcag ccgaaggcga gcgtcgacct cggccggacc cgcggtgggc
     4441 aataggatct cgtcgaaacc ccaatccgcg gacagcgcca c
//
LOCUS       DASVXZ010000354         1726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_735584, whole genome shotgun sequence.
ACCESSION   DASVXZ010000354 DASVXZ010000000
VERSION     DASVXZ010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735584"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(410..1285)
                     /locus_tag="VF788_07320"
     CDS             complement(410..1285)
                     /locus_tag="VF788_07320"
                     /inference="COORDINATES: protein motif:HMM:NF033564.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEX8933988.1"
                     /translation="MHTVDAHALDTAVSSWLVERSAGERPASQTVRAVAVDGKTARGS
                     RAPHQPARHLFAAFEHASGVVLGQMQVDDKSNEITAFAPLLDRIDLTNTVITADALHT
                     QDRHATYLHQRGGHYVFIVKNNRPKLRTQLAGLPWRDIPAVDLRRDKRHGRVESRTLK
                     LAAIDSGIIFPHAQLAAQIVRRRRPNTSTATGTGHTETVYAVTDLGFGDIRTDHLAEI
                     IREHWSIENKLHWIRDVTFAEDHSQIRTGNGPAVMATLRNFAVSRHRLGGHTNIAAAC
                     RYTSRHPIRAADLLT"
BASE COUNT          287 a          537 c          599 g          303 t
ORIGIN      
        1 gaatcgaact cgcatggcca gcttggaaga ctgcgcatgg tgccatgccc acgggcgtgg
       61 acctgcagct ggtcgcgtcc cggtgccccg ctattgaccg tggtttaccg cggctaatag
      121 cacggtaata gtacgccgcg ctttgtcgct aagcatggag gcgagggcgg aagcgggtat
      181 cccgtcgcgt cggcgagctc gtctcggggc gggttggggg tggggggtca tcgcatcaag
      241 atggagacac cccacggctg aacgatcttg acgccgactc gaagcggcta cgtcttcggc
      301 accgacgtaa caggataccc ctggtgaccc gccactatcc gaggtagtcg ctcgttcacg
      361 catccctgag cgaggcccgc ccagggcgcc ggcatagttg atctgtcatt tatgtgagca
      421 ggtcagcggc tcgaatggga tggcggctgg tgtatcggca ggcggcggcg atattggtgt
      481 ggccgcctag gcggtgacgg ctgacggcga agttgcgcag cgtagccatg accgcgggtc
      541 cgttgccggt gcgtatctgg gaatggtcct cggcgaaggt cacgtctcgg atccagtgca
      601 gcttgttttc gatcgaccag tgttcgcgga tgatttcggc cagatggtcg gtgcggatgt
      661 cgccgaagcc gaggtcggtg accgcgtaca cggtttcggt atgcccggtt cccgtcgcgg
      721 tgctggtgtt ggggcgtcgg cggcgcacga tctgagcggc gagttgggcg tgggggaaga
      781 tgatcccgga gtcgatggcg gcgagtttga gggtgcgtga ctccactcgg ccatgccttt
      841 tgtcccggcg caggtccacg gccgggatgt cgcgccaggg cagcccggcc agttgggtgc
      901 gcagtttcgg gcggttgttt ttgacgatga atacatagtg gccgccgcgt tggtgcaggt
      961 aggtcgcgtg gcggtcctgg gtgtgcaggg catcggcggt aatcacggtg ttggtgaggt
     1021 cgatccgatc cagcagcggc gcaaaagcgg tgatctcgtt gcttttgtca tcgacctgca
     1081 tctggcccaa cacgacaccg ctggcatgct caaaggcggc gaacaggtgg cgtgctggct
     1141 ggtgaggggc gcgggagccg cgcgcggtct tgccgtccac cgcgaccgct cgcaccgtct
     1201 ggctcgccgg acgctcgccg gccgaccgct cgaccagcca ggacgatacc gccgtgtcca
     1261 gggcgtgcgc gtcgacggtg tgcaggaccg acgaaacgtc gactcactcg gggcccgccg
     1321 gccgatcccg agccgcagtc gcaccgacac cggcaggtca tgagcccatt ccgcgatccc
     1381 cacatagctg cgcgcgccgg ccagcaccgc acacaccgcc gccgccaaca ccctcaccaa
     1441 ccggtgccgc acgccccgac tatcccgagg gtcggggacc cgggacagcg caaccagcag
     1501 atccggcccc cacggatccg cagccacgca gcccgaacca gcctgcgttc gaccgtgaca
     1561 gacatcgcga agaggtatcg gcaaggatgg acaagcggac acggcaacac tccgatgatc
     1621 aaggctgggg ttagagccgc catgatcact cgtgctgccg tgtccgcccc actacctcat
     1681 caccggcgtg tcgccgtgta gacacgccga ataatcggac tatgcc
//
LOCUS       DASVXZ010000355         2043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1453348, whole genome shotgun sequence.
ACCESSION   DASVXZ010000355 DASVXZ010000000
VERSION     DASVXZ010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1453348"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1442
                     /locus_tag="VF788_07325"
     CDS             3..1442
                     /locus_tag="VF788_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEX8933989.1"
                     /translation="MGLLVSGLIAGGVLVAEPAVAAPTLVPLSPSLAGQLLSAASGRL
                     PVMVHGATLADADRAVTATGMRRITSFRKIGVVVASATKQQIAAARTQPGVTYLEGDQ
                     PIAGLAATSQVATRGLEARKTLIGANGAALEGSGVSIAVIDSGIDPTHPSFAGGKVVR
                     SLKSVCPDESSTDTNCIVDMPNGVDTDTLALGGHGSHVSSIAAGRSVTLSDGTIVSGA
                     APDAKIVSLSTGAAVAILSADTSLNWVLEHHNAPCGDSVVATQCPAIKVVNNSYGPQG
                     GGKFDPNSVTVKLQRQLVKEGVVVVWAAGNDGGDGSTSLTNPPSQDPTGGIISVASYN
                     DKGTGTRSGPVSAFSSRGAKTDPSTWPDISAPGENIVGACRAYLPICSTGLKPQSGPG
                     LLDVGSYNTLSGTSMAAPQIVGIVALLFQANPHATPAEIEKALKSTALRYSNGAPYQQ
                     VGGYMTSFDKGTGLVDTMAASQALGAHSH"
     gene            1580..>2043
                     /locus_tag="VF788_07330"
     CDS             1580..>2043
                     /locus_tag="VF788_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012796511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3145 domain-containing protein"
                     /protein_id="HEX8933990.1"
                     /translation="MSTGGIIYVHSSPSAVCPHVEWAIAGVLQVKVDLLWTAQAAAPG
                     QLRAECEWSGAPGTAAALVSVLRAWPMLRFEVTEEPSPGLDGERFCFVPGLGLWRSRT
                     SANGDIVVGEDQLRTLATTARDAESFTHQLEQLLGATWDDALEPFRRAADGAP"
BASE COUNT          364 a          665 c          659 g          355 t
ORIGIN      
        1 tgatcggcct gctggtcagt ggactgatcg ctggaggtgt gctggtcgcc gagccggctg
       61 tcgcggcacc gacgctggtg ccgctgtcgc cttcgctggc cggtcaattg ttgtcggcag
      121 cctccgggcg cctgccggtg atggtgcacg gggcaaccct ggcggacgct gaccgggcgg
      181 tcaccgccac cgggatgcgg cggatcacct cctttcgcaa gatcggcgtg gtggtcgcat
      241 cggcgaccaa gcaacaaatc gcagcggcgc gcacccaacc tggcgtcaca taccttgagg
      301 gtgaccagcc catcgcaggt ctcgccgcca cctctcaggt ggccacccgt ggcctggagg
      361 cgaggaagac cctgatcggc gcgaacggcg ctgcgctgga aggcagcggc gtcagcatcg
      421 cggtgatcga ttccgggatc gaccccacac atccctcgtt cgccggtggc aaggtcgtgc
      481 gcagcttgaa gagtgtctgc ccggacgagt ccagcacgga caccaactgc atcgtggata
      541 tgcccaacgg tgtggacacc gacaccttgg cgctgggcgg ccacggtagc catgtgtcca
      601 gcatcgccgc aggtcgcagc gtcactctca gcgacggcac catagtgtcc ggcgccgcgc
      661 ccgatgcgaa gatcgtctcc ttgtccaccg gcgcagcggt ggcgattctc agtgcagaca
      721 cttcgttgaa ctgggtgctg gagcaccaca atgcaccatg tggtgattca gtggtggcca
      781 cgcaatgccc ggcgatcaag gtggtcaaca attcttacgg tccgcaaggc gggggcaagt
      841 tcgatcccaa ttcggtgacc gtcaagcttc agcgccagct ggtcaaggaa ggcgtggtcg
      901 tagtatgggc cgccggtaat gacggtgggg atggctccac gagcctcacc aacccaccct
      961 cccaggaccc gaccggcggg atcatttcgg tggcctcata caacgacaaa ggcaccggaa
     1021 ctcgcagtgg accggtatcc gccttctcat cgcgcggtgc gaagaccgac ccttcgacct
     1081 ggccggacat ctccgctccc ggagagaaca tcgtcggtgc ttgccgcgct tacttgccga
     1141 tctgctccac cgggctcaaa ccgcaaagcg gtccgggcct tctcgacgtg ggcagctaca
     1201 acaccctcag cgggacgtcg atggctgcac cgcagatcgt cgggatcgtc gcgttgttgt
     1261 tccaagccaa tccgcacgcg acgcccgcag agatcgagaa agcgttgaag tcgactgcgc
     1321 tgcgttattc gaacggcgcg ccctaccagc aggtgggcgg gtacatgaca tccttcgaca
     1381 agggcactgg attagtcgac acgatggccg cctcgcaagc gctgggggca catagccact
     1441 aaacctcttc tcagccgcga cacacacgcc gtccactggc gcgtcagcgg tcctgcaggc
     1501 acaatgtgtg atgatggtcc cgtcgatgat cacgaggacg taggggaaga cgctccacgt
     1561 cgatcagcgg aggcaccaca tgagcaccgg tgggataatt tacgtccact cgtcgccgtc
     1621 tgcggtatgc ccgcacgtcg aatgggcgat agcgggagtc ttacaggtca aggtggacct
     1681 cctgtggact gcgcaggcgg ccgctcctgg ccagttacgg gccgaatgcg aatggtccgg
     1741 cgcacccggt accgcggcgg cgttggtcag cgtgttgcga gcgtggccga tgctccgttt
     1801 cgaggtcacc gaggaaccga gcccggggtt ggacggagaa cggttctgtt tcgtccccgg
     1861 actcggtttg tggcgatccc gcacgagcgc caacggtgac atcgtggtgg gtgaagatca
     1921 gctacgcacc ctggcgacca ctgctcgcga cgcggagtcc ttcacccatc agctcgagca
     1981 gctcctcggc gccacctggg acgacgctct cgaacctttc cgccgcgccg ccgacggcgc
     2041 ccc
//
LOCUS       DASVXZ010000356         2273 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_915379, whole genome shotgun sequence.
ACCESSION   DASVXZ010000356 DASVXZ010000000
VERSION     DASVXZ010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915379"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VF788_07335"
     CDS             <1..414
                     /locus_tag="VF788_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8933991.1"
                     /translation="LDKLHGAIRYLGETPATRKEPDPVETITTPGTPWWDPGADASVD
                     PDTDSVTIAGVEVAKGSRVLLMPGLRRSDAQDMFLEGRTATVAAVLLDVDGNTHVAVT
                     IDDDPGAEISAQHGRFRYFAPDELKPLEASSGSES"
     gene            411..968
                     /locus_tag="VF788_07340"
     CDS             411..968
                     /locus_tag="VF788_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protease"
                     /protein_id="HEX8933992.1"
                     /translation="MTTTMVAGIGNIFLGDDAFGVELARRLTAETLPDGVKVADYGIR
                     GMHLAYDLLEMAPDTTILLDAVSRGGDPGTLYVLEIGSGDVPGIEPSAVDAHGMTPDA
                     VLALLDNLGGSAGRTLLVGCEPVSTEEGIGLSTTVAEAVDRAVGVVLDLLTDKEGSEG
                     NVPSAASAGLLGVGDRPGHGSGPGV"
     gene            1034..1315
                     /locus_tag="VF788_07345"
     CDS             1034..1315
                     /locus_tag="VF788_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEX8933993.1"
                     /translation="MCLGIPGEVIEILPDQPDLAMVEVSGVKRAINIGLLTDDPPVPG
                     DWILIHVGFALSKIDEQEAKAAMDFLIGIGQAYDDEIAALLESRIDERQ"
     gene            1321..>2273
                     /gene="hypD"
                     /locus_tag="VF788_07350"
     CDS             1321..>2273
                     /gene="hypD"
                     /locus_tag="VF788_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEX8933994.1"
                     /translation="MRFVDEYRDAEKARALAAKIAALCEPGRHYKFMEVCGGHTHTIY
                     KHGLEDYLPESVNLVHGPGCPVCVLPMGRVDDAIALAEQPDVIMTSFGDMMRVPGGRG
                     SFFDSSAAGTDIRMVYSPLDALKIARQNPDKHVIFMAIGMETTTPSTAMTVLRAAAEG
                     IENFSIFCNHVMIVPAIKAILDSPDLRLDGFIGPGHVSTVIGCRPYEYIPAEYGKPIV
                     TAGFEPLDILQSVYMLLQQLAEGRCEVENQYSRVVPWDGNTVALRAVSEVMELRPYFE
                     WRGLGFISHSALQVREKYAAFDAERHFALPGVRVADPKACQ"
BASE COUNT          406 a          687 c          755 g          425 t
ORIGIN      
        1 ctcgacaagc tacacggcgc aatccggtat ctcggggaga cccctgcgac ccggaaagag
       61 ccggacccag tcgagacgat caccactccc ggcaccccgt ggtgggatcc cggcgccgat
      121 gcctcggtag acccggacac cgacagtgtg accatcgccg gggtcgaggt ggccaagggc
      181 agccgagtgc tgctcatgcc ggggctgcgc cggtcagacg cccaggacat gttcctcgag
      241 gggcgcactg ccactgtcgc cgcggtgctg ctcgatgtgg acgggaacac tcacgtcgcg
      301 gttaccattg acgacgatcc aggcgccgag atctccgcgc agcatggtcg cttccgctac
      361 ttcgcccccg acgagctcaa gccgctcgag gcctcgtcag gatccgagtc atgaccacca
      421 ccatggtggc cggaatcggc aacatcttcc tcggtgacga cgcattcggc gtcgagctgg
      481 ctcgccggct cactgccgag acgcttccag acggtgtaaa ggtcgctgat tacggtatcc
      541 gtgggatgca cctggcgtac gatcttctcg agatggctcc ggacaccacg atcctgctcg
      601 acgccgtctc acggggcggc gatccgggaa cgctctacgt gctcgagatc ggatccggtg
      661 atgtgccggg catcgagccg tcagctgtcg acgcgcacgg gatgactccc gacgcggtgc
      721 tcgcgctgct ggacaacctc ggcggcagcg cggggcgcac tttgctggtt ggatgtgaac
      781 cggtcagtac cgaggaaggt atcgggttgt ccacgaccgt cgccgaagcc gtcgacaggg
      841 cggtcggtgt ggttctggat ttgctcaccg acaaggaagg aagtgaaggg aatgttccgt
      901 ctgctgcgtc ggctggtctt ctgggggtcg gcgatcggcc tggtcacggt agcggtccag
      961 gtgtctaagg acgtggcccg ctacaagcag atcagcgaga tgtaaccaac tcccaccacg
     1021 gagggaatag ctcatgtgcc tcggcatccc gggcgaggtg atcgagatcc tccccgacca
     1081 gcccgatctg gccatggtcg aggtcagcgg ggtcaagcgc gcgatcaata tcggtctgtt
     1141 gaccgatgat ccgcctgttc ccggtgactg gatcttgatt catgtcggct ttgcactatc
     1201 caagatcgac gagcaagagg ccaaggcagc gatggacttc ttgataggca tcggtcaggc
     1261 ctacgatgat gaaatcgccg ccctgctcga atcgcggatt gacgaaaggc agtgagcggt
     1321 atgcgattcg tcgatgagta ccgggatgcc gaaaaggctc gtgccctagc cgccaagatc
     1381 gcggcgctgt gtgagccggg gcggcattac aagttcatgg aggtgtgcgg tgggcacacg
     1441 cacaccatct acaaacacgg gctggaggac taccttccgg agtctgtcaa cctggtgcat
     1501 gggccaggct gcccggtgtg cgtgctcccg atgggtcggg tggacgatgc gatcgcgctg
     1561 gccgagcagc cagatgtgat catgacgtcc ttcggcgaca tgatgcgggt gcccggcggg
     1621 cgcgggtcgt tcttcgactc ctcggccgcc ggcaccgaca ttcggatggt ctattccccg
     1681 ctcgacgcgc tgaagatcgc ccggcagaat ccggacaagc acgtgatctt tatggcgatc
     1741 gggatggaga ctaccacgcc gtctaccgcg atgaccgtgc taagggcggc agcggagggt
     1801 atcgagaact tctcgatctt ctgcaaccac gtcatgatcg tcccggcgat caaggccatc
     1861 ctggactccc ccgacctgcg attggacggg tttatcggcc ccggccatgt ctccaccgtc
     1921 atcggctgcc ggccttatga gtacatccca gcggagtacg gcaagccgat cgtgacggcg
     1981 ggattcgagc cgctggatat cctgcagtcg gtgtacatgc tgttgcagca gttggccgag
     2041 ggccgttgcg aggtggaaaa ccagtactcc cgggtggtgc cgtgggacgg caacacggtg
     2101 gcgttgcggg cggtgagcga ggtgatggag ttgcgtccct acttcgagtg gcgcggtctc
     2161 ggcttcatct cccactccgc gttgcaggtc agggaaaagt atgcggcctt tgatgccgag
     2221 cggcatttcg ccctacccgg ggtgcgagtc gccgacccga aggcctgcca atg
//
LOCUS       DASVXZ010000357         2739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_486208, whole genome shotgun sequence.
ACCESSION   DASVXZ010000357 DASVXZ010000000
VERSION     DASVXZ010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486208"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VF788_07355"
     CDS             complement(<1..380)
                     /locus_tag="VF788_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003102690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEX8933995.1"
                     /translation="MSRQPLRLAVREAERVLTDAGVASPKVDAELLAAHVLGVPRGRL
                     PMVPLVDPPVVDALRVLVSRRADRVPLQYLTGSAALGALEVAVGPGVFIPRPETEVLL
                     AWGLTALEGVEHPLVVDLCTGSGAL"
     gene            complement(377..1432)
                     /gene="prfA"
                     /locus_tag="VF788_07360"
     CDS             complement(377..1432)
                     /gene="prfA"
                     /locus_tag="VF788_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010305214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEX8933996.1"
                     /translation="MDTAAVQALLDQHAELEYRLADPSLHADPAAARKVGRRYGELSR
                     IVRVVRELDRARNDISAARELAAEDPAFATEADTLADRIPHLETELADLLLPRDPHDD
                     SDVVMEIKSGEGGAESALFASDLLRMYLRYAERRGWKAEVLDATESDLGGYKDVTVSL
                     KSTQSGVWERLKFEGGVHRVQRVPVTESSGRIHTSAAGVLAYPEPDDVEIELDDKDLR
                     IDVYRSSGPGGQSVNTTDSAVRITHLPTGVVVSCQNEKSQIQNRIRATAVLRARLQAL
                     AEEKAQQEASEQRRSQVRTVDRSERVRTYNFPENRISDHRVNYKAYNLDAVLDGDLDG
                     VLDALIAADRELRLRAT"
     gene            complement(1468..1680)
                     /gene="rpmE"
                     /locus_tag="VF788_07365"
     CDS             complement(1468..1680)
                     /gene="rpmE"
                     /locus_tag="VF788_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEX8933997.1"
                     /translation="MKQGIHPEYVETQVTCGCGNSFATHSTKRDGQIHVEVCSNCHPF
                     YTGKQKILDTGGRVARFEKRYGKRQK"
     gene            complement(1848..>2739)
                     /locus_tag="VF788_07370"
     CDS             complement(1848..>2739)
                     /locus_tag="VF788_07370"
                     /inference="COORDINATES: protein motif:HMM:NF006734.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV family protein"
                     /protein_id="HEX8933998.1"
                     /translation="RASVPGMSRAPVRCVAFRCPACWAFRAGMAVKTSGLVMELNGVP
                     ADVNQITALALMNYGHYTSMRVDDLRVRGLSLHLDRLVRDCRRVFDADLDPNQIRRLV
                     RHALARAPRSVVVRVTVFDPHLELGHPGANAEPHVLVTLRPPTLRPYSPLRFQSAVYR
                     RELPAIKHVGLFGALWRRRIAQRNGFDDVLFTDADSTISEAATSNIGLLDGEEIVWPQ
                     APCLEGTTKRLINQILDGRTTTRPVTLSQLVEADAVFATNAAVGVRPIGAVDGFRWPG
                     PHPTLNALSMHYAGISPEQV"
BASE COUNT          462 a          897 c          905 g          475 t
ORIGIN      
        1 agcgcgccgg atcccgtaca gagatcgacc accagtgggt gctcgacgcc ctctaacgcc
       61 gttaaacccc atgccaggag cacctcggtc tctgggcgcg ggatgaacac accgggaccg
      121 accgccacct cgagcgcacc cagggcagca ctgccggtga ggtactgcaa gggcacccga
      181 tcggcgcgcc gggacaccag aacgcgcaat gcgtccacga cgggtgggtc gaccagcgga
      241 accatcggca gccgaccccg cggcacgccg agcacgtgcg ccgcgaggag ttccgcgtcc
      301 accttcgggg aagccacccc ggcgtcggtg aggacccgtt ccgcctcgcg tacggcgagt
      361 cgtagcggct gcctgctcat gtggcgcgca ggcgcagctc acggtccgcg gcgatcagtg
      421 cgtcgagtac cccgtcgagg tcaccgtcta gcaccgcatc gaggttgtag gccttgtagt
      481 tgacgcgatg atcggagatg cggttctccg ggaagttgta ggtgcgcacc cgttcggatc
      541 gatccactgt gcgcacctgg gaccggcgct gctcagaggc ctcctgctgg gctttctcct
      601 cggcgagggc ctgcagccga gctcgcagca ccgcagtcgc ccggatcctg ttctggatct
      661 gtgacttctc attctggcac gacacgacga cgccggtcgg caagtgggtg atgcgcacgg
      721 ccgagtcggt ggtgttgaca ctctgcccgc cggggcccga ggaacggtag acgtcgatac
      781 gcaggtcctt gtcatcgagt tcaatctcga cgtcgtccgg ctccgggtag gccagcaccc
      841 ctgccgctga ggtgtgaatg cgccctgagg actcggtgac gggtacccgt tgcacccggt
      901 ggactccacc ttcgaatttc agccgctccc agacgcccga ttgcgtggac ttcaggctga
      961 cggtgacgtc cttgtacccg cccaggtcag attcggtggc gtcgaggacc tcagccttcc
     1021 agccgcgccg ctcggcatag cgcaggtaca ttcggagcag atcgctcgcg aacagcgcgg
     1081 actccgcacc gccctccccc gacttgatct ccatgaccac gtcggagtcg tcgtgtgggt
     1141 cgcgcggcag cagcaagtcg gcgagctcgg tttccaggtg cgggatccga tcggcgaggg
     1201 tgtccgcctc ggtggcgaag gcaggatcct cggccgctag ctcgcgggcc gcggagatgt
     1261 cattacgcgc ccgatccagc tcccggacca ctcgcacaat ccgcgacaac tccccgtagc
     1321 gccgccctac cttgcgtgcc gcggcgggat cagcgtgcag cgaaggatcg gcgagccgat
     1381 actccagctc ggcgtgctga tccagcaacg cctgaactgc cgctgtgtcc actggcgact
     1441 caccgattct ccactagata ctgcgtctta cttctgtcgt ttgccgtagc gcttttcgaa
     1501 gcgcgcgacg cggccaccgg tgtccagaat cttctgcttg ccggtgtaga agggatggca
     1561 gttggagcac acctcgacgt ggatctgacc gtcacgcttg gtgctgtggg tggcgaagga
     1621 gttgccacaa ccgcaggtga cctgcgtctc gacgtactcc ggatgaatgc cctgcttcat
     1681 ggatgtcctc tcttcatggc cgccgggtcc ccaggttggt acgcggggtg aaccggagcc
     1741 ggactgcgtg ggcagccgcc gggttgggca acgctgcgct ggcacagtgt gccagatccg
     1801 cccaactgaa acatggaaca cctcgccatg ccgcgatgtt cccgcgccta cacctgctcc
     1861 gggctaatac cggcgtagtg catggatagc gcgttgagcg tgggatgtgg gcccggccac
     1921 cggaaaccgt cgacggcacc gatagggcgg acgccgacgg cggcgttggt ggcgaacacg
     1981 gcgtccgcct cgaccagctg gctgagggtc accggcctgg tggtggtgcg cccgtcgagg
     2041 atctggttga tcagtctctt cgtggtgccc tcgaggcagg gcgcctgcgg ccagacgatc
     2101 tcctcaccgt ccagaagtcc gatattggat gtggccgctt cggaaatggt ggagtcggcg
     2161 tcggtgaaca gcacatcgtc gaagccgttg cgttgcgcga tgcgccgtcg ccacaatgcg
     2221 ccgaatagtc ccacgtgttt gatggcaggc aactcccggc ggtaaacggc cgattgaaac
     2281 cgcagcgggc tatacggtct gagagtgggc ggtcgaagag tgacgagcac gtggggctcg
     2341 gcattcgcgc cggggtggcc gagctcgaga tgggggtcaa acacggtcac tcgcaccacg
     2401 accgatcgag gggccctggc gagcgcgtgc cggactaggc gccggatctg gttgggatcc
     2461 aggtcagcat cgaatactcg ccgacagtcc cgcaccaggc ggtccaggtg tagtgacagg
     2521 cctcgaaccc gcaggtcgtc gactcgcatc gaggtgtaat gaccatagtt catcaacgcc
     2581 agcgcggtga tctggtttac gtcggctggg accccgttca gctccatcac gagccctgac
     2641 gtcttcactg ccatcccagc ccggaacgcc caacacgccg ggcaccggaa cgcgacacac
     2701 cttaccgggg cgcgcgacat gccgggcacg gatgcacga
//
LOCUS       DASVXZ010000358         6002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1094810, whole genome shotgun sequence.
ACCESSION   DASVXZ010000358 DASVXZ010000000
VERSION     DASVXZ010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6002
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1094810"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..553
                     /locus_tag="VF788_07375"
     CDS             <1..553
                     /locus_tag="VF788_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX8933999.1"
                     /translation="DSCPHTYSSGNLGQQLIGAGRTFIGYSEIMPSDGYTGCTSGQYA
                     RKHSPWVNFTNVPSSSNLRFSHFPTTYSTLPSVSFVIPNLCNDMHDCSISTGDIWLKN
                     NINSYAQWAKANNSLLILTFDEDDSSQRNQIATVLYGQHVKVGSYPGYITHYNVLRMV
                     EDAFGLPCVANSCSAAPITDIWQ"
     gene            1423..1923
                     /locus_tag="VF788_07380"
     CDS             1423..1923
                     /locus_tag="VF788_07380"
                     /inference="COORDINATES: protein motif:HMM:NF016119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class F sortase"
                     /protein_id="HEX8934000.1"
                     /translation="MSGSAFDIKANVCQMNYVRPLNPPGDQKHTVCWVRKGFGVAPGS
                     DSGGTSYILGHAWAKTPLIFNPLSELAMQEVTGQNPEMQSGVPTFPVKVINGYNIVLR
                     TPTGILTYTVTRAFAVPKSQAGNVKSLTANTPNRLVLITCGVKRGVDVDYNIIVDAYL
                     MSSTAG"
     gene            complement(1962..2183)
                     /locus_tag="VF788_07385"
     CDS             complement(1962..2183)
                     /locus_tag="VF788_07385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934001.1"
                     /translation="MNRADPLDAVPRPVSVPDGPVKRVGNRSAAPALGGYAATWAVTR
                     SPPRALGMLLAGVPRAAKAGRDAFAAPNR"
     gene            complement(2180..2521)
                     /locus_tag="VF788_07390"
     CDS             complement(2180..2521)
                     /locus_tag="VF788_07390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934002.1"
                     /translation="MLRELLGLSVSVAGLGLSATRAVLPLPRLSPLVPGLVSLVDAAP
                     GLRTAVQTMLGRPAADVSLVLGGAVGHALASGPVALLTPAGQRLCLYRKAAVRRQAWD
                     RFDDATAGIPG"
     gene            complement(2719..3573)
                     /locus_tag="VF788_07395"
     CDS             complement(2719..3573)
                     /locus_tag="VF788_07395"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8934003.1"
                     /translation="MVIHALLPYTRSRLVTRDFRETPVAGRWTGVRKGRSHRDTPTEF
                     LRTGPDPGRGGGRLPSGIRTVPAGTDEKAVTHEYLKALVEQLPRRTLFLDVGAGDGVT
                     TRHVGQYIERTIAIEPSVPMRQALRRSCPGAVVLDEPIDEVKLDARADLVLRSHVFYY
                     APDSAWLGTARRILNWVAPGGVLVLMLQNPENDCMRMVGHFTGVRFDLSDLASILEQN
                     GYRSTNLADAIDVAELMINLPALRSRRRPSRQKLVGYVVRNFSDPEGAIYIAHTHDIL
                     TVRRAPIA"
     gene            complement(3626..5185)
                     /gene="fxsT"
                     /locus_tag="VF788_07400"
     CDS             complement(3626..5185)
                     /gene="fxsT"
                     /locus_tag="VF788_07400"
                     /inference="COORDINATES: protein motif:HMM:NF040586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxSxx-COOH system tetratricopeptide repeat
                     protein"
                     /protein_id="HEX8934004.1"
                     /translation="MPDPDQGVFSDELIERVGQLCREMLGEGFPGAVGSAQPFAVDLS
                     ALSDFKRVYGEKALAQSRQELGDDHVDTLTLAHELAIGLRASGDYERARLHDEDTLSR
                     RRRVLGEDHPDTLTSARSLVIDSSALGDYPKARRLGEDTLTRYRQVLGADAPLTLRSA
                     HQLATDLRALGEHEQARLLDEDTLSQRRRVLGEDHPATLRSANNLAVDLRALGEYQQA
                     HALNEETLTRCRRVMGEDHSQTLTSAHNLADDLRALHDYQQACVLGEDTLTRCRRVLG
                     EDHPHTLTSAHNLANDLRALGEHEQACRLGEDTVNRRRLVLGPDHPDTLTSAHNFAVD
                     LRSSGEYEQARALDEDNLSRCRRVLGVDHPHTLASAHNLANDLRALGEHRQACQLGED
                     TMSRRRRVLGSDHPDTLISANNHALDLRTVGHYQQARALDEDTLSRCRRVLGPGHPNT
                     LTSAYNLARDLSALGEHQQASELNKDILTWCQIASSGNRVDTVAVTDTASPDDIVDDS
                     QTPHGNRERAN"
     gene            5419..>6002
                     /locus_tag="VF788_07405"
     CDS             5419..>6002
                     /locus_tag="VF788_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fucose isomerase"
                     /protein_id="HEX8934005.1"
                     /translation="MARVGLLTFSDGRDFVHTDIKAFTLDVEGRIAQALEHAGHEVVR
                     AAEPIWTNTLATAEARRVADARPDLTVFNYPVWAFPHFSMLAAEATPGPLLLFSNIDP
                     QFPGMVGMLAAGGGLDQIGRSHTRAWGDVSDPTVRDRVLQTVRAATAVSRLSGSTFGR
                     IGGRPMGMYTAVADTDQWMSTFGVDVEEIDQWEIV"
BASE COUNT         1081 a         1984 c         1861 g         1076 t
ORIGIN      
        1 cgactcctgc ccgcatactt attccagtgg taacctcggg cagcagctaa tcggcgccgg
       61 tcgcactttt atcggctatt cggaaatcat gccatccgat ggctacaccg gctgtaccag
      121 cggccagtac gcccgcaagc atagcccctg ggtaaacttc acgaacgtcc catcgtctag
      181 taacttacga ttcagtcact tccccaccac ctacagcacg ctaccgagcg tgtcattcgt
      241 catccccaac ctctgcaacg acatgcacga ctgcagcatc tcgaccggtg acatctggtt
      301 gaaaaataac atcaacagct atgcacagtg ggccaaagcc aacaatagcc tcctgatcct
      361 cacctttgat gaggacgaca gcagccaaag aaaccagatc gcaactgtcc tctacggcca
      421 gcacgtcaag gtcgggagtt accctgggta catcacgcac tacaacgtgc tgcgcatggt
      481 cgaggatgcg ttcggtcttc cttgtgtggc gaacagttgc agcgccgctc cgatcaccga
      541 catctggcag taacgcaagg tgtcggctat gtgtcggccg aagagttggt ggatctgctc
      601 ccgtcagccc acctttcggc ttccgcagcg cgagccttga aggccttctc ggcgagttcg
      661 gccgcagccg aaccgagcag gaggcgaagc ggcggaccag cgcgtacgcc cgtcctccca
      721 gacgtcgtgc ggaaggcctt cgaatatcca gttcgtcaca tttcgagggg gctgcggcat
      781 ggcgacgatg ttcgtcgtct taatgcaact gtgctgtgtt gtttggccag tggttgcgaa
      841 tctatcgggc gaaaccgagc gcctcggatg atccaaactg tttcagatcc gtagaactgg
      901 gctttctgcc gttgctgtcg caactggtat aggaggtgat ggccagacct tgaatccagg
      961 ttcggcaagc ggcccgctgg cacccagagt cacgccacag cgagctcgat cctgtggtta
     1021 gtgggcgagt cccctccaac gactgccacc gctgccatgc ctcaacctaa tcctgttttc
     1081 gagcgggccc ggagcagtgg taacacacgc cgatccgtgt cgtcgcgcgc gcgttcggcc
     1141 gatccagctg ctatggtcca ccgctccgct gagggacgga gaagcttgga tcgcttgcgc
     1201 tgtcgcacga aggtcgctct taccgtcgcg gtcgtcctga ccttgggcgt caccggctgc
     1261 ggtccgtctg agtcgtcgtc tggtcgcaaa gccacggtca tgccggctgc cgtcccggct
     1321 ccaactctgc ctgtgctgcc ccccgatcca cctgcgtcgc cctccgatcc cccatctgtg
     1381 cctcacgagt tcgtcgcgcc tgccgcacca accgggttcg agatgtccgg ttcggcgttc
     1441 gacatcaagg ccaacgtctg ccagatgaac tacgtccgac cgctcaatcc gcctggcgat
     1501 cagaagcaca ctgtgtgctg ggtgcgaaag ggcttcggcg tcgcacccgg cagcgactcc
     1561 ggcggcacga gctacatcct cggccacgcg tgggcgaaga ccccgctgat cttcaacccg
     1621 ttgtccgaac tcgcgatgca ggaagtcacc gggcagaacc ccgagatgca aagcggcgtc
     1681 ccgactttcc cggtaaaggt gatcaacggg tataacatcg ttctccgcac cccgaccggc
     1741 atcctcactt atacagtcac acgggcgttc gccgtcccga aatcacaagc tggaaacgtg
     1801 aagtccctca cggccaacac cccgaaccgg ctggtcctca tcacctgcgg cgtcaagagg
     1861 ggcgtcgacg tcgactacaa catcatcgta gacgcttacc tgatgtcctc gacggcagga
     1921 tgaaccggtg ggcgtgataa gtcatttggt tttccggctg ctcacctgtt cggggcggcg
     1981 aaggcgtccc gcccggcctt cgcggcacgc ggcacccccg ccagcagcat gccgagcgcg
     2041 cgtggggggc tgcgggtcac cgcccaagtc gccgcgtacc cgccgagagc cggcgctgcg
     2101 gagcggttac ccacccgctt caccggtccg tcggggacgg acaccggcct cggcacagca
     2161 tccaacggat cggcccggtt cacccgggaa tccccgccgt cgcatcgtcg aagcggtccc
     2221 atgcctgccg ccggaccgcc gccttgcgat acaggcacag ccgctgcccc gcgggcgtca
     2281 gcagggccac cggtcccgac gccagcgcgt ggccgacagc acctcccagc acgagcgaca
     2341 cgtcggcggc cggtcgtccc agcatcgtct gtaccgccgt gcgcagccct ggcgcggcgt
     2401 cgacgagcga caccaacccg ggcaccaacg gggacagccg cgggagcggg aggaccgcgc
     2461 gcgtcgcgga caggcccaga cccgccacgc tcacgctcaa ccccagcagc tcgcgcagca
     2521 ccaggtctgc gttggcggat gctgcacgct cgccggcgcg acgtccccac ccagccgatg
     2581 ctcccgctcg acctccttga ccacgcggac cgagccgggg acaagttgca gcagccggcg
     2641 accaaggata gctagggcgg aatcggagac cggatgcagc ggtgaccgtg ccgtgctcgc
     2701 cgaacgtgcg ctaccccgtt aggcgatcgg ggcccgccga acggtcagga tgtcgtgagt
     2761 gtgggcgatg tagatcgccc cctcgggatc ggagaagttt cgcaccacgt agcccaccag
     2821 tttctgcctg ctcggtcggc gcctgctgcg cagcgcggga agattgatca ttaattccgc
     2881 cacgtcgata gcatcggcga gattggtgct ccggtagcca ttctgctcca ggatgctggc
     2941 caggtcggac agatcgaaac gcacgccggt gaagtgcccc accatccgca tgcaatcgtt
     3001 ctcaggattc tgcagcatga gaacgagcac accgccgggc gccacccaat tcaggatgcg
     3061 ccgcgcggtg cccaaccaag cagaatccgg cgcgtagtaa aacacgtgtg agcgcaagac
     3121 cagatcagcg cgggcatcca gcttgacctc atcgatcggt tcgtctaaca cgacagcgcc
     3181 gggacatgag cgccgaagcg cctgccgcat gggcacactg ggctcgatgg cgatggtgcg
     3241 ctcgatgtat tgacccacgt gtcgcgtggt caccccgtca cctgcaccga catcgaggaa
     3301 cagcgtgcga cgagggagct gctcaacgag tgccttcagg tactcatggg ttacggcttt
     3361 ctcgtccgtg cccgcaggaa cagttcgaat gcccgacggt aatcttcccc cgccacgtcc
     3421 aggatccgga ccggttcgga gaaattcggt cggagtgtca cgatgcgaac gacctttcct
     3481 caccccggtc caccgtcccg cgaccggcgt ttcacggaag tcccgtgtca ccaaccttga
     3541 tcgagtgtaa ggcagcaacg catggatcac catcaggtga gaaattgatc agctcatggc
     3601 tgatactggg acttaatcca ctctgtcagt tggcgcgttc gcggtttcca tgcggcgttt
     3661 gcgaatcgtc gacgatgtcg tcgggtgatg ccgtgtcggt tacagccaca gtgtcgactc
     3721 ggtttccgct ggatgctatt tgacaccagg tcaggatgtc tttgttgagt tcgctggcct
     3781 gttgatgttc gcctaacgcg ctcaggtcgc gggcgagatt gtaggccgaa gtcagggtgt
     3841 tgggatggcc ggggcccagt acccggcggc agcgggacaa ggtgtcctcg tcgagagctc
     3901 gggcctgctg gtagtggccc acagtccgca ggtccagggc gtggttgttc gcggagatca
     3961 atgtatcggg gtgatcggag cccaggactc ggcggcgacg actcatcgtg tcctccccga
     4021 gctggcaggc ttgcctgtgc tcaccgagtg cgcgcaggtc gttggcgaga ttgtgggccg
     4081 aagccaacgt gtgaggatga tccacgccca atacccggcg gcagcgggac aagttgtcct
     4141 cgtcgagagc ccgggcctgc tcgtactcac ccgagctccg caggtccaca gcaaagttgt
     4201 gcgccgaggt cagcgtgtcg gggtggtcgg ggcccaatac aaggcggcga cgattcaccg
     4261 tgtcctcgcc gagccggcag gcttgctcgt gctcacccag cgcgcgcagg tcgttggcga
     4321 gattgtgggc cgaggtcagg gtatgcggat gatcctcgcc cagcactcgg cggcatcggg
     4381 tcaacgtgtc ctcgccgagc acacaggcct gctggtagtc atgcaatgcg cgcaggtcat
     4441 cagcgagatt gtgagctgag gtcagggttt gggaatgatc ctcgcccatt acgcgccggc
     4501 accgggtcaa cgtctcctcg ttgagcgcat gggcctgctg gtactcaccc aatgcgcgca
     4561 aatccaccgc gaggttgttc gctgagcgca gcgtggcggg gtgatcctca cccagtaccc
     4621 ggcggcgctg gctcagggtg tcctcgtcaa gcagacgggc ttgctcgtgt tcacccagtg
     4681 cccgtaaatc ggtggcgagc tgatgagccg aacgcaacgt gaggggggca tcggcaccca
     4741 acacctggcg gtagcgggtc aaggtgtcct cgccgagccg gcgggccttc gggtagtcac
     4801 cgagcgcact cgaatcgatc acgaggctgc gggccgaggt cagcgtgtca ggatggtcct
     4861 cacccaacac ccgacggcgc cggctcagcg tgtcctcgtc gtgcagccgt gcccgctcgt
     4921 aatcgcccga cgcgcgcagt ccgatagcca gctcatgagc caacgtcaag gtgtccacgt
     4981 gatcgtcgcc cagctcctgg cggctttggg ccaatgcctt ttcaccgtag acgcgcttga
     5041 agtcactcag tgcactcaga tcgacagcga aaggctgggc cgaacccacg gcgccgggaa
     5101 agccctcccc aagcatctct cggcacagct gaccgacccg ttcaatcaac tcgtccgaaa
     5161 acaccccctg gtccgggtca ggcatgactc ccagcatccc accaacttgt cccgatcccg
     5221 aagcggcgca gcatcacaac atcatccctc gggatcgaga ttgggacgca cagccaggtg
     5281 acgcccggga cattgctctg gtacgtcgaa tcccggcagg ttgctgggcg atgacctggt
     5341 ggcccttccg ttgggtgata ccttcgtcac gcagtggaat cccggcgaca ctgaccgtcc
     5401 cagcgggcag gaggagatat ggcacgggtt ggactgttga ccttctccga cggacgtgac
     5461 ttcgttcaca ccgacatcaa ggcgttcacg ctcgacgtcg aaggccgcat cgctcaggcg
     5521 ctggagcatg ccggacacga agtcgtccgc gcggcggagc cgatctggac caacacgctg
     5581 gccaccgctg aggcgcgccg ggtggccgac gcgcggccgg acctcaccgt cttcaactac
     5641 ccggtgtggg ccttcccgca cttctcgatg ctcgctgcgg aggccacccc gggccccctg
     5701 ctgctgtttt ccaacatcga cccgcagttt cccgggatgg tcggcatgct ggccgccggt
     5761 ggggggctcg accagatcgg ccggtcacac actcgggcgt ggggcgacgt gtcggacccg
     5821 accgtgcggg accgcgtcct gcagaccgtt cgagccgcca ctgcggtgtc ccggctgtcg
     5881 ggcagcacgt ttggccgcat cggcgggcgc cccatgggga tgtacaccgc ggtcgcggac
     5941 accgaccagt ggatgagcac gttcggggtt gacgtcgagg agatcgacca gtgggagatc
     6001 gt
//
LOCUS       DASVXZ010000359         2580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_38159, whole genome shotgun sequence.
ACCESSION   DASVXZ010000359 DASVXZ010000000
VERSION     DASVXZ010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38159"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..619)
                     /locus_tag="VF788_07410"
     CDS             complement(<1..619)
                     /locus_tag="VF788_07410"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX8934006.1"
                     /translation="MPQSTGVEAGLFAAGKDGKIAWVPGIGSGRLLCTIPNVRSDSDA
                     GLLAVTPAVDYATSGVVYVLYVRQASSTSNVGALEAWKVNSTSQPTSIAFVRAVVDGS
                     QGLTNNSLSHMVGDLLVAPDGSLFFSQGDDASSTTVDTAALRAQDVSDPHGKIFHVLP
                     DGRGATNNQYYDSANPNSWKTRVCMRMVSAIGCGATKTSAKLMPQL"
     gene            1250..2236
                     /locus_tag="VF788_07415"
     CDS             1250..2236
                     /locus_tag="VF788_07415"
                     /inference="COORDINATES: protein motif:HMM:NF026010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HEX8934007.1"
                     /translation="MSSVNDCEIRCLGDDGKQMGPRCPRLHRKDGTWNPRHGTWYFLV
                     SYPGPNSKGNRHSRGGFTSEADAQAELDRVKTKLSQGVQVTGITAELYFNEWLTAKRD
                     IRSNTRRSHAGHIEHHLIPHLGHHRLEALRVEHVAEMLAKVAGSDATRQQVRATLRSA
                     LSDAMRQGLVSVNVASLVKLPAGKRPKALVWTAEREARWREAVAAHLGRDTSPAEARE
                     LAVRPSAVMVWRPDQLGTFLDTAAGDRLYPLFHVIAYRGLRRGEAAGVAWEDVDLDGG
                     VLAVRRQRVQLGWEVIEDDPKSEAGVRTLALDAGSVAALRVHRRAQLTERMG"
BASE COUNT          506 a          727 c          865 g          482 t
ORIGIN      
        1 acagctgcgg catcaatttt gccgatgttt tggtcgcgcc acagccgatt gcggaaacca
       61 tacgcataca cacgcgggtt ttccaactgt tcgggttcgc actgtcgtaa tattggttgt
      121 tggtggcgcc tcgaccgtca ggcaagacgt ggaagatctt tccgtgcgga tcactcacat
      181 cctgggctcg tagagccgct gtatccacgg tcgtagagct tgcatcgtct ccctgactga
      241 aaaagagtga gccatctgga gcgacaagaa ggtcgccgac catgtgcgag aggctgttat
      301 tggtgagtcc ttgacttccg tcgaccacgg cccgaacaaa cgcgatgctc gtaggttgcg
      361 acgtgctatt taccttccac gcctcgagtg ccccaacgtt gcttgtggac gatgcttggc
      421 gcacatagag tacgtacaca acgccagatg tcgcgtaatc cactgcggga gtgactgcga
      481 ggaggccggc gtctgagtct gaacgaacgt tggggattgt gcagagcaga cgaccactcc
      541 caatgccagg aacccaagcg atctttccat ctttgcctgc ggcaaagagg ccagcttcga
      601 cgccggttga ctggggcacg tatttgatgt cagtgaggtt gtacgagctg gctccaccga
      661 gcggcgtcga tgtgtagacg agcgagaacc cgtctggcag gcccggcgcg cctcctgcgg
      721 gaatggaagt tgcatagccg aaccataacg gcagggtgat agctatcgcg atggctgccg
      781 cgcgaccagc gcgacggcgt aaaactagat gttgagcgag ttggtgccac catgaagggt
      841 gaccgccggg ccgaattgga cgctactctt ttcagcgctc gctcgaagcg gatcaccgag
      901 ccaatgagct tctggtcgtt tagcacacgt gagtccgtaa gaatcgggga gtgacaatta
      961 gccccgaccg gactgggatc ctcgcgcgcg tacaccttgc tcagctgaac atgcagagat
     1021 gaagagcacg tgctatccag gttcacgtcg aactgcgttg tgttgggcta cgggtatccg
     1081 gacagcacct ggccgtttgc gcgttcccct ccgctcacgt tcgttggctg cagcgggagc
     1141 ttctgggact caggaagatc gtttgacacc tgggtctatt gacggggctg atgcgttgtt
     1201 gtggggtggg ctgggtcggg tgctgcggtg cgtagcttag atggcgtggg tgagttccgt
     1261 gaacgattgc gagatccggt gtctcggcga cgacggcaag cagatggggc cgcggtgccc
     1321 aaggttgcac cgtaaggacg gcacctggaa cccgcggcac ggtacctggt atttcctggt
     1381 gagctaccca gggcctaata gcaaagggaa ccggcatagc cgtggcgggt tcacgtcaga
     1441 ggcagacgcg caggcggaac ttgaccgagt caagacgaag ctcagccaag gcgtgcaagt
     1501 gaccgggatc accgctgagt tgtacttcaa cgagtggcta acagcaaaga gggatatccg
     1561 gtcgaatacc cgccgctccc acgcagggca tatcgagcac cacctgatcc cgcacctggg
     1621 gcaccaccgc ttggaagcgc tgcgggtgga acacgtcgcc gagatgctcg ccaaggtagc
     1681 tggcagtgat gcaacccggc agcaggtacg cgccacactg cgctcggcac tgtccgacgc
     1741 gatgcgccag gggcttgtgt cggtcaacgt ggcgtcgctg gtgaagctcc cagcggggaa
     1801 gcggccgaag gccctggtgt ggacggctga gcgggaggcc cggtggcgtg aggccgtggc
     1861 cgcgcaccta ggcagagata catcgcctgc tgaggcacgg gagcttgcgg tgcggccgtc
     1921 ggcggtgatg gtgtggcgac cggaccagct tggcacgttc ctggacaccg ccgccggcga
     1981 ccggctctac cccttgttcc atgtgatcgc ttaccgtggg ctgcgccggg gtgaagcggc
     2041 gggggttgcg tgggaggacg ttgatctgga cgggggagtg ctggccgtgc ggagacagcg
     2101 ggtgcaactg gggtgggaag tcattgagga tgacccgaag tccgaggccg gcgtgcgaac
     2161 gctggcgctg gacgccggct cggtcgccgc tctgcgcgtg cacaggcgag cccagctaac
     2221 cgaacggatg gggtagtgca agagaccctc gggcactcgt ccatcacccc caccagcgac
     2281 acctacacgt cggtgtatcc ggcggtcgcg gcggcagcag cggaagccgc agcatcgctc
     2341 gtaccgaggt ccggtcggaa ctaatgtcat caccacgtca tcacatcagg acgcagatcc
     2401 ccgcttggtg aaggaaccgc tggcccgatg gtgcgccgcc agggactcga accccgaacc
     2461 ccctgattaa gagatggaac ggcttgagcg ctgtgctgac gtgcggtttt gcagatcgac
     2521 agaaagcaca ctcgcaagaa tcagacgctg ggaagacgat caatcgacat ttcgtatgtg
//
LOCUS       DASVXZ010000360         1856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1740659, whole genome shotgun sequence.
ACCESSION   DASVXZ010000360 DASVXZ010000000
VERSION     DASVXZ010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1740659"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="VF788_07420"
     CDS             complement(<1..732)
                     /locus_tag="VF788_07420"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677864.1"
                     /note="catalyzes the formation of D-glucono-1,5-lactone
                     6-phosphate from D-glucose 6-phosphate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEX8934008.1"
                     /translation="MADSRLQTIAYPSPSSRPFRRHLDPLAPHVIVLFGATGDLSKRK
                     LLPGLAYLAESALAPDIRVVGTAMEEFSSDEFRALARSAVESFGLHAIDADAWRRFSE
                     RLTYVPQGGGPDGLRAAVKEAETLLGPQVRRLHYLSVPPRAANAVITMLRDADLVDNA
                     RVVMEKPFGDDLASAIRLNNFVHEVFDESQIFRIDHFLGKEAALNILAFRFANGLFEP
                     IWNRNFIDHVQIDIPESLGLDQRASF"
     gene            complement(1087..>1856)
                     /locus_tag="VF788_07425"
     CDS             complement(1087..>1856)
                     /locus_tag="VF788_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HEX8934009.1"
                     /translation="YAGWPVAVSSPQGRFAEAAAELNGRVLHRAEAHGKHLFHVYRPD
                     LMVHVHLGLYGSFTEATLPVQPPQGQVRMRLVGPTHWTDLRGPAACELLTVTEVDAVR
                     ARLGPDPLRRDADPDRAWVRISRSRAPLATLLMDQAVISGIGNIYRAELLFRHRLDPL
                     RPGCKLREDQWAALWSDLVELMHDGVRRGRIDTVRPEHDPVAMDRAPRQDRHGGEVYV
                     YRRAGEPCLVCGTVVRATRHVGRNLYWCPRCQGRPEI"
BASE COUNT          349 a          618 c          589 g          300 t
ORIGIN      
        1 gaaggaggcg cgctggtcga gcccgaggga ctccgggatg tcgatctgca cgtggtcgat
       61 gaagttgcgg ttccagatcg gctcgaacag gccattggcg aaccggaacg ccaggatgtt
      121 cagcgccgct tccttgccca ggaagtggtc gatccggaag atctgcgact cgtcgaacac
      181 ctcgtggacg aagttgttga gccggattgc actggcgagg tcgtctccga agggcttttc
      241 catcaccacc cgggcgttgt cgaccaggtc ggcgtcgcgc agcatggtga tcacggcgtt
      301 ggcggccctg ggtggtacgg acaggtagtg caaccgccgc acttgcggac caagcagcgt
      361 ctcggcctcc ttcaccgccg ccctcagacc gtccggtccg ccaccctggg gcacataggt
      421 aagtcgctcc gagaacctcc gccacgcgtc ggcgtcaatc gcgtgcagcc cgaagctctc
      481 gacagccgac cgggcgagag cgcggaactc gtcactgctg aactcctcca tcgccgtgcc
      541 caccacgcgg atgtccggcg cgagcgccga ctccgcgagg tatgcaagac ccggcaacaa
      601 ctttcgcttg gacaggtcac ccgtcgcccc gaacaagacg atgacgtggg gggccagcgg
      661 gtcaaggtga cgccggaacg gacgcgaact cggcgaggga taagcgatgg tctggagacg
      721 agaatcagcc acgctgaggc ctctcgggac gaacctggtg ggtgcgatat cacccggaat
      781 cttagcgtct cggcccttag ctagccgaga cggtgatcag ttccgcctcc accgggctgc
      841 ccggcaggcg ctcacgcttc cgtgtcccgc cacggatctc aaggcgatca ccgttgaagg
      901 ggtcttgtcg gacggcaccg ccagtaccga cggtgaagag gtaatcgatc tcgtctaata
      961 ttgtggtcag aagtcctgaa aatgcagatc gcgtcattca ccggtaacct cgaacactta
     1021 acgccgagag aagttcagac gaattcgatc cgagtttcca gggtccgaat ttagaaccat
     1081 cggctgctag atctctggcc gcccctggca gcgagggcac cagtagaggt tgcgtccgac
     1141 gtgccgcgta gcgcgcacca ccgtgccaca caccagacac ggttctccgg cgcgacggta
     1201 gacgtagact tcgccgccat gccggtcctg ccgtggagca cggtccatcg ccaccgggtc
     1261 gtgttccggc cggacggtat cgatccggcc gcgacgcacc ccgtcgtgca tcagctcgac
     1321 gagatctgac cacagggccg cccactgatc ctcgcgcagc ttgcaacccg gccgcagtgg
     1381 atccagccga tggcggaaca acagctcagc ccggtaaatg ttgccgattc ccgagatcac
     1441 cgcctgatcc attagcaatg tggccagcgg cgcccgagac cgggagatgc ggacccaggc
     1501 gcggtccggg tcggcgtcgc ggcgcagcgg atccggcccc agccgggccc gcaccgcgtc
     1561 cacctcggtc accgtgagca gttcacaggc cgccggcccg cgcagatctg tccagtgcgt
     1621 ggggccaacc agccgcatgc gcacctgccc ttgcggcggc tgcacgggca acgtcgcttc
     1681 ggtgaacgaa ccgtaaagac caaggtgcac gtgcaccatc aggtcaggcc tgtagacgtg
     1741 aaacaggtgc ttgccgtgcg cttcggcgcg gtgcaacacc cgaccgttga gctccgcagc
     1801 ggcctcagcg aagcgaccct gcggactgga cactgcgact ggccaccctg cgtaac
//
LOCUS       DASVXZ010000361         3848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1203748, whole genome shotgun sequence.
ACCESSION   DASVXZ010000361 DASVXZ010000000
VERSION     DASVXZ010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3848
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1203748"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..313
                     /locus_tag="VF788_07430"
     CDS             <1..313
                     /locus_tag="VF788_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003079443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX8934010.1"
                     /translation="TWLAQRAVGPQTAAAIALFGEPLDAQEAVRTGLAYRLIDGNGAG
                     HEAVVTAAVALAQRTAAAPRNLVIATKAALRITARMPEHADAVTYESAPQLASLRAIK
                     R"
     gene            complement(348..1361)
                     /locus_tag="VF788_07435"
     CDS             complement(348..1361)
                     /locus_tag="VF788_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX8934011.1"
                     /translation="MSRSTSEQLAGVELADPELRAFLERGLQQVEELLHREVQSEFRF
                     LTETSLHLVDAGGKRFRPLFTLLAGQFGPDKDRTQEVVRAAAVVELVHLATLYHDDVM
                     DEATMRRGAVSANARWDNTVAILTGDFLFAHASRLVADLGPDAVRIIACTFAELVTGQ
                     MRETLGPVGDTDPVAHYLAVVSEKTGSLIATAGRYGAMFSGASTERIEALRRFGETIG
                     TAFQISDDIIDIASPAAQSGKTPGTDLREGVRTLPMLYALAEQGPGVDRLRALLAGPL
                     TDDALIAEALWRLRESPGLDRAVRTLRSYTDSARSALAFLPPCSARDALASVTDYLAA
                     RTG"
     gene            complement(1369..2976)
                     /gene="nuoN"
                     /locus_tag="VF788_07440"
     CDS             complement(1369..2976)
                     /gene="nuoN"
                     /locus_tag="VF788_07440"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HEX8934012.1"
                     /translation="MLCGAVLGGSVLGVWRAQVEHLQAPAVDYGAIAPILLVLGGACL
                     SVLVEAFVSRPARWLAQVALTLLTLGAAGAALGMHLYSHGVGSELTLAGTIAVDGPSL
                     FLWGTLLALGLAAMLLIADRTVEPGGAFTADAALRPGTAADRALMVGTRTETVMQTEV
                     FPLFLFSLGGMMVFVAANDLLTMFIALEVLSLPLYLMAGMARRRRLLSQEAAVKYFLL
                     GAFSSAFFLYGVALLYGYAGSVQLSRIAEASAGTDRSDTLLFGGLALLIIGLLFKGSV
                     GPFHTWTPDVYQGAATPVTAFMAACTKVAAFGAILRVLTVAFAGTRWEWRGLLWGIAI
                     VSMVIGAVLGLTQTDIKRMIAYSSVAHAGFLLVGAIALTAQGLSGTMFYLLAYGFTTL
                     AAFGVVTLVRDADGEATHLSQWAGLAKRSPLTAAVFAFLLFALAGIPLTSGFTGKFAV
                     FSAALADGMAPLVVVALVASAVAAFFYLRVVVLMYFSEPAADGPTVSVPGAFTTAAIT
                     LGVVVTLLLGVLPTFALDWAALGAFAS"
     gene            complement(2978..>3848)
                     /locus_tag="VF788_07445"
     CDS             complement(2978..>3848)
                     /locus_tag="VF788_07445"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEX8934013.1"
                     /translation="LPDAGAEAPVGAGVLLVGVMDKVAIYGFLRYCLPLFPGASRALA
                     PLVLVLAVAGIIYGALLAVGQSDMKRFVAYTSVAHFGFIALGVFAFSTQAQAGAVLYM
                     INHGISTGMLFIVIGMLMARGGSRLVSDYGGVAVLAPVLAGMTLVAGLSSLALPGTNS
                     FVSEFLVLIGAYPRQPVFTIIATAGMILAALYVLWFYQRVMHGPVRGTAVVGALDGPG
                     TATAPEASAQRSRARFPDLSVREVAVLAPLVALILLLGFFPQPVLNVISPSVGATLTE
                     VGMSDPVVGQGGN"
BASE COUNT          758 a         1332 c         1283 g          475 t
ORIGIN      
        1 gacgtggctg gctcaacgcg ccgtcggccc gcagaccgct gccgcgatag ccctgttcgg
       61 tgagccactg gacgcccagg aggcggtgcg caccgggctg gcgtaccgct tgatcgacgg
      121 caacggcgcc ggtcacgagg ccgtggtaac cgccgcagtg gctctcgctc agcgaaccgc
      181 ggcggctccc cgaaacctcg tgatcgccac caaggcggcc ctgcggatca ccgcgagaat
      241 gcccgagcac gccgacgcag tcacctacga gagcgccccc cagctcgcct cactccgcgc
      301 aatcaagcgc tgacagcagg acgggagtgc accgcggtgg gcagggctta gccggtgcgg
      361 gcggccaggt agtcggtgac cgaagccaac gcatcgcggg ctgagcaggg cggtaggaag
      421 gcgagtgcgg agcgcgcgga gtcggtgtag gagcgcaggg tgcgcaccgc ccggtccagg
      481 ccaggcgatt cgcgcagccg ccacagcgcc tcggcgatga gcgcatcgtc ggtcaacggg
      541 ccagccagca gagcgcggag ccggtcgacg ccaggacctt gttcggccag cgcgtagagc
      601 atcggcaggg tgcggacacc ctcgcgcaga tcagtgccgg gcgtcttgcc ggattgggcg
      661 gcaggggagg cgatgtcgat gatgtcgtcg gagatctgga acgccgtgcc gatggtctca
      721 ccgaagcggc gcagcgcctc gatccgctcg gtagatgcgc cggagaacat cgcgccatag
      781 cgacccgcgg tggcgatcag cgaaccggtc ttctccgaca ccacggccag gtagtgagcc
      841 accggatcgg tatcaccgac gggaccgaga gtttcccgca tctggccggt gaccagctcg
      901 gcgaaggtgc aggcgatgat ccgcaccgcg tccggtccga gatcggcgac cagtcgggag
      961 gcgtgtgcga acaggaaatc gccggtgagt atcgcgacgg tgttgtccca gcgggcgttg
     1021 gcgctgaccg cgccccggcg catggtggcc tcatccatca cgtcgtcgtg gtagagcgtg
     1081 gccaggtgca ccaactccac gactgccgca gcccgcacca cttcctgcgt ccgatcctta
     1141 tccggcccga actggcccgc gagcaaggtg aacagcggac ggaaccgctt gccaccggcg
     1201 tcgaccaggt gcagcgaggt ttcggtgagg aagcggaact cgctttgcac ctctcggtgc
     1261 agtagctcct ccacctgttg caagccccgc tccaagaagg cgcgcagctc cggatcggcc
     1321 agctccacac cggcgagctg ctctgatgtt gatctgctca ttaccacgtc aggaggcgaa
     1381 cgcgccgagc gcggcccagt cgagggcgaa ggtgggcagc accccgagca gcagggtgac
     1441 cacgacaccg agggtgatgg cagcggtggt gaaggcaccg ggcacgctca ccgtcggacc
     1501 gtcggcggcg ggttcgctga agtacatcag caccaccacc cgcaggtaga agaacgcggc
     1561 aaccgcgctg gccactagcg cgaccacgac aagcggcgcc atcccatccg ccaacgctgc
     1621 actgaatacc gcgaacttcc cggtgaaccc actggtcagc ggtataccgg cgagtgcgaa
     1681 cagcaggaag gcgaacaccg cggcggtcaa cggagatcgc ttggccagtc cggcccactg
     1741 ggacagatgg gtcgcctcgc cgtccgcgtc tcgcaccagg gtcaccaccc cgaacgcggc
     1801 caatgtggtg aagccgtagg cgagcaggta gaacatcgtg ccggacaggc cctgcgcggt
     1861 cagcgcgatc gcccccacca gcaggaaccc ggcgtgcgcc accgatgagt aggcgatcat
     1921 ccgtttgatg tcggtctgcg tcaggccgag caccgcgccg atcaccatgg aaacgatcgc
     1981 gataccccag agcaggccgc gccactccca acgggtgccc gcgaacgcca ccgtcagcac
     2041 ccgcaggatg gcaccgaacg cagcgacctt ggtgcaggct gccatgaacg ccgtcaccgg
     2101 cgtcgccgcg ccctggtaga catccggggt ccaggtgtgg aaggggccga ccgagccctt
     2161 gaacagcagc ccaatgatca acagcgccaa gcctccgaac aacagggtgt ccgaacgatc
     2221 ggtgcccgcc gaggcctcgg cgatccggga cagctgcacc gagcctgcgt agccgtacag
     2281 cagtgccacc ccgtaaagaa agaaggcaga agaaaacgct cctaagagga aatacttgac
     2341 cgctgcttcc tgggacaaca gcctgcgccg ccgggccatc ccggccatca gatacagcgg
     2401 caggctgagc acctccagtg cgatgaacat ggtgagcaga tcgttggccg cgacgaagac
     2461 catcatcccg ccgagggaga acaggaacag cgggaagacc tcggtttgca tgacggtttc
     2521 ggttctggtg cccaccatca acgcgcggtc ggctgcggtg cccggccgca acgccgcgtc
     2581 ggcggtgaac gcacctccgg gctcgacggt tcgatcagcg atgagcagca tcgcggccaa
     2641 acccagcgcc agcagggtgc cccacaagaa cagtgagggt ccatcgacgg cgatcgtccc
     2701 ggcgagagtc agctcgctgc ccacaccgtg ggagtacagg tgcataccca gcgcggcacc
     2761 cgccgcgccc aaggtgagca aggtcaaagc gacctgggcc aaccaccgtg ccggacggga
     2821 cacgaacgct tccaccagca ccgaaaggca ggcacccccg agcaccagca ggatcggggc
     2881 gatcgctccg tagtccaccg ctggcgcttg caggtgctcg acctgcgctc gccatactcc
     2941 gaggaccgag cccccaagaa ctgcaccgca gagcacctca gttgcctccc tgcccgacga
     3001 ccggatcgga catgccgacc tcggtgagcg tggccccgac cgacgggctg atcacattca
     3061 gcaccggctg cgggaagaac ccgagcagca ggatcagcgc caccaacggt gccagcaccg
     3121 caacctcgcg gaccgacagg tcggggaacc tggcgcgcga gcgttgcgcg gaagcttccg
     3181 gcgccgtcgc ggtgcccggt ccatcgagcg cacccaccac tgccgtaccg cgcacgggac
     3241 cgtgcatgac gcgctggtag aaccacaaca cgtacaacgc ggccaggatc atgccagcgg
     3301 tcgcgatgat cgtgaacacc ggctggcgcg ggtacgcgcc gatcagcacc aggaactccg
     3361 agacaaacga gttggtgccg ggcaacgcca gcgaggataa cccggccacc agcgtcatcc
     3421 cggccaggac cggagccagt accgccaccc cgccgtagtc gctgaccagc cgggagccac
     3481 cgcgggccat cagcatgccg atcacgatga acagcatccc ggtggagatg ccgtggttga
     3541 tcatgtagag caccgcgccg gcctgggcct gggtggagaa cgcgaacacg cccagcgcga
     3601 tgaagccgaa gtgggccacc gaggtgtagg ccacgaaccg cttcatgtcg gactggccca
     3661 cggccagcag cgcgccgtag atgatcccgg cgacggccag caccagcacc agcggggcca
     3721 gcgcccgcga ggccccgggg aacagcggca ggcagtagcg caggaagccg tagatggcga
     3781 ccttgtccat cacgccgacc agcagcacac cggcgcccac cggggcctcc gcaccggcgt
     3841 cgggcagc
//
LOCUS       DASVXZ010000362         2690 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_128475, whole genome shotgun sequence.
ACCESSION   DASVXZ010000362 DASVXZ010000000
VERSION     DASVXZ010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128475"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /locus_tag="VF788_07450"
     CDS             complement(<1..479)
                     /locus_tag="VF788_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934014.1"
                     /translation="MQQAARNQPIVASPGQLGPAQRTADWQRLRDEQFDVVVIGGGVV
                     GSGAALDAATRGLKVALVEARDLASGTSSRSSKLFHGGLRYLEQLEFGLVREALHERE
                     LMLTRLAPHLVKPVSFLYPLAHRVWERPYVAAGLALYQTLGGRRSVPGQRHLTRAGAL
                     "
     gene            642..2132
                     /gene="glpK"
                     /locus_tag="VF788_07455"
     CDS             642..2132
                     /gene="glpK"
                     /locus_tag="VF788_07455"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005453596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEX8934015.1"
                     /translation="MSQYVVAIDQGTTSTRCLVFDHGGRVVSADQREHQQQLPRPGWV
                     EHDPLEIWANTREVVAGALASADLTARDIAAVGIANQRETTVVWDRRSGKPVHNAIVW
                     QDTRTDRLCTELGGDVGPGRYQARTGLPLSTYFSGPKIRWILDQVDGARQARAGELCF
                     GTVDTWLLWNMTGGRHITDATNASRTLLMDLNMLRWDEAIADEMGVPIPMLPRIRSSS
                     EAYGTVQEPAVLAGVPIAGILGDQQAATFGQACLSVGEAKNTYGTGNFMLLNTGTELI
                     PSRHGLLTTVCYQLGSQDPVYALEGSIAVTGSLVQWLRDNLGMISSAAEIEPLAGSVQ
                     DNGGVYFVPAFSGLFAPHWRSDARGAIVGLTRYVNRGHLARAVLEATAFQTREVLEAM
                     NADSGAELTSLKVDGGMVGNDLLMQFQADILGVRVIRPVISETTALGAAYAAGLAVQF
                     WSDEKEIRHNWAADRQWDPMMDPQRREELYAQWRKAVTRTLGWVDG"
     gene            complement(2101..2346)
                     /locus_tag="VF788_07460"
     CDS             complement(2101..2346)
                     /locus_tag="VF788_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934016.1"
                     /translation="MRIVTCGLIAGAALLGPVPMAMADTPVSTANTDSQAVPQTEVSM
                     LAVSLTVGGAVATAGSGMALVLTRRRALSRPPTQASG"
     gene            2505..>2690
                     /locus_tag="VF788_07465"
     CDS             2505..>2690
                     /locus_tag="VF788_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase family protein"
                     /protein_id="HEX8934017.1"
                     /translation="MPLYAAYGSNMDPAQMMQRAPHSPMAMTGWLIGWRLTFGGEDLL
                     WEGALATVVEDPESQVFV"
BASE COUNT          458 a          897 c          894 g          441 t
ORIGIN      
        1 agcgctccgg cccgggtgag atgccgttga cccggcactg atcgtctccc gccgagtgtc
       61 tggtagagcg ccaacccggc ggcgacgtag gggcgttccc agacccggtg cgccagcgga
      121 tacaagaagc tcaccggctt gaccagatgc ggcgcgagcc gggtcagcat cagctcccgc
      181 tcgtgcaggg cctctcggac cagcccgaac tccagttgct ccaggtaacg caggccgccg
      241 tggaacagct tggacgaccg gctggacgta ccggaggcga ggtctcgggc ttccaccagg
      301 gccaccttga gacccctggt ggcggcatcc aacgcagcac cggagccaac gacaccgccc
      361 ccgatgacca cgacgtcgaa ctgctcgtcg cgcaaccgct gccagtccgc cgtgcgctgc
      421 gccggaccga gctgcccggg cgacgcgaca atgggctgat tgcgcgcggc ctgctgcatc
      481 ggtcccaccc cctgcgtcgt gccgatcgcc tcatgcacgc taccgcgtgg ggacaccgcc
      541 ctgtggcctg aaactccgct ccccacctgg gcgatcaacc cgctcggcgt tgtcccggtc
      601 aggaggtaat tcgccgaagt acccgctagc gtccaggatc gatgagccag tacgtcgtag
      661 cgatcgacca gggcaccacc tccacccgct gcctggtgtt cgaccacggt ggccgagtcg
      721 tctcagccga ccagcgtgaa caccagcagc agcttcccag acctggctgg gtggaacacg
      781 acccgctgga gatctgggcg aataccaggg aggtagtggc cggagcgctg gccagtgccg
      841 acctgacagc gcgcgacatc gccgcagtcg gcatcgccaa ccagcgcgag acgacggtgg
      901 tgtgggaccg gcgaagcggg aagccggtgc acaacgcgat cgtctggcag gacacccgca
      961 ccgatcggtt gtgcaccgaa ctcggcggtg acgtgggccc gggccgttac caggctcgca
     1021 ctgggttgcc gctgtcgacc tacttctccg gcccgaagat ccgttggatt ctggatcagg
     1081 tagatggcgc ccggcaggcg cgggccggcg aactgtgctt cgggaccgtc gatacctggt
     1141 tgttgtggaa catgaccggc ggccggcaca tcaccgacgc caccaacgca tcgcggaccc
     1201 tgctgatgga tctcaacatg ctgcgctggg atgaggccat cgccgatgag atgggcgtcc
     1261 cgataccgat gctgccgcgg atccgctcgt cgtcagaggc gtatggcacc gtccaggagc
     1321 cggctgtgct ggccggggtg ccgatcgccg gcattctggg tgaccagcag gcggccacct
     1381 tcggtcaggc ctgcctgtcc gtcggggagg ccaagaacac ctacggcacc ggtaacttca
     1441 tgctgctcaa taccggcact gagctgatcc ccagccgcca cgggctgctc accacggtct
     1501 gctaccagct cggctcgcaa gatccggtgt acgcattgga gggctcgatc gcggtcaccg
     1561 gttcactggt gcagtggctg cgggacaacc tgggcatgat ctcctcagcc gcggagatcg
     1621 aaccgctggc agggagtgtc caggacaacg gtggcgtcta tttcgtcccc gcgttttctg
     1681 ggctgttcgc tccgcattgg cgctccgacg cgcggggcgc gatcgtcggc ctgacccgct
     1741 acgtcaaccg gggacatctg gccagggcgg tgcttgaagc gaccgcattc cagacccgtg
     1801 aggtactcga ggcgatgaac gccgactccg gggccgagct gacctcgctc aaggtcgatg
     1861 gaggaatggt cggaaacgat ctgctgatgc agttccaggc ggacatactg ggcgtccggg
     1921 tgatccgccc ggtgatcagc gagacgaccg cattgggcgc ggcctacgcc gctggtctcg
     1981 ctgtgcagtt ctggtctgac gagaaagaga ttcggcataa ctgggcggct gatcggcagt
     2041 gggacccgat gatggatcca cagcggcgcg aggagctcta cgcccagtgg cgtaaggcgg
     2101 ttacccggac gcttgggtgg gtggacggct gagggcccgg cgccgggtca ataccagcgc
     2161 catgcctgat ccagctgtgg cgaccgcgcc gccgacggtg agcgacaccg ccaacatgct
     2221 cacctcggtc tgcggcacag cttggctgtc cgtattggca gtgctgaccg gcgtgtcggc
     2281 catcgccatc ggaaccggac ccagcagagc cgcgccagcg atcaacccgc aggtaacgat
     2341 ccgcattcgc aacctcctta tgccagctct ccaccctcat agacgcgtgg acacgcctga
     2401 ggttgcctga cggcaacacg ctcagtaccc actcttgaac agggcgtagc cgacggcgat
     2461 ggcggaacgt cggaacacat cgtgcggcgg ctacgctatc gcgcgtgccg ctctacgccg
     2521 cctatgggtc caacatggat cccgctcaga tgatgcagcg cgcgccgcac tccccgatgg
     2581 cgatgaccgg ctggctgatc gggtggcggc tgacctttgg tggcgaggac ctcctctggg
     2641 agggcgcact ggccactgtc gttgaggatc ccgagtccca ggtgtttgtc
//
LOCUS       DASVXZ010000363         4974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_735851, whole genome shotgun sequence.
ACCESSION   DASVXZ010000363 DASVXZ010000000
VERSION     DASVXZ010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4974
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_735851"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VF788_07470"
     CDS             complement(<1..398)
                     /locus_tag="VF788_07470"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934018.1"
                     /translation="MSLNSPLGIVDGLDVIELGCGTAYISAWLAKRGARPVGVDPTPA
                     QLASAKRAQAATGIEFPLIEAPAEQVPLLDAMFDLAVSEYGASLWADPVLWVPEAARL
                     LRPGGRLVFLTNSTLVYLCSPDEGWSARHC"
     gene            complement(514..678)
                     /locus_tag="VF788_07475"
                     /pseudo
     CDS             complement(514..678)
                     /locus_tag="VF788_07475"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
     gene            complement(675..986)
                     /locus_tag="VF788_07480"
     CDS             complement(675..986)
                     /locus_tag="VF788_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934019.1"
                     /translation="MRSRAARCALRARTAYRRIALSPLGRSAALVIGRREEDGRFSLT
                     VTAATERPYQFQFPTVAHREDLQAALAGIPRWFADEHGAPDWREHITGLLAEEIRVEL
                     S"
     gene            complement(1001..1465)
                     /locus_tag="VF788_07485"
     CDS             complement(1001..1465)
                     /locus_tag="VF788_07485"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HEX8934020.1"
                     /translation="MDLHTITALRRPGSRAELALRPGEAVLGGGTWLFAEPQPDLHTI
                     VDLHGLGWTPLELTSAGLTIAATCTLHQLSAWAALPFLHQCCAALAGSFKIWHEATVG
                     GNICLELPAGPMIRDGCGSGRGSRGVARWWRRGTDARRRAHHRGTAHRARTL"
     gene            complement(1466..1936)
                     /locus_tag="VF788_07490"
     CDS             complement(1466..1936)
                     /locus_tag="VF788_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEX8934021.1"
                     /translation="MSPDETWLATVIELAVRNVHEGGGPFSAVIVAEGGLVGTGQNRV
                     TRDNDPTAHAEVVAIRAACTASDHFSLAGATLYTSCEPCPLCLSAALWARVDRVAYAA
                     DRHDAARGGFDDREFHELFARDRASWPMTVDALAMPNRTEPFDTWLANPDRVEY"
     gene            complement(1944..2291)
                     /gene="uraH"
                     /locus_tag="VF788_07495"
     CDS             complement(1944..2291)
                     /gene="uraH"
                     /locus_tag="VF788_07495"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEX8934022.1"
                     /translation="MGSGWDGWWAGDRDQHSTHVLDAALGRPAAGVPVRLEGPSGVLA
                     TATTDGDGRISAMAAGSVGIHRLVFDTAAYFTATSQRGFYPEVIIAFTVEEGNYHVPL
                     LLSPFAYSTYRGS"
     gene            complement(2257..2730)
                     /gene="uraD"
                     /locus_tag="VF788_07500"
     CDS             complement(2257..2730)
                     /gene="uraD"
                     /locus_tag="VF788_07500"
                     /EC_number="4.1.1.97"
                     /inference="COORDINATES: protein motif:HMM:NF010372.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEX8934023.1"
                     /translation="MDLETFNVLPSHRAVAELMSCCSSLNWAQRLARSRPYGTVGDLI
                     RCADQVLAELDEDEVAAALAGHPRLGADPMRASSRREQGGIPAGMCTALAQANREYEA
                     RFGHIYLVCADGRSGQELLRMLHERLGNDMTIERTVLRDELVKINRLRLGRLVGG"
     gene            3045..3941
                     /gene="pucL"
                     /locus_tag="VF788_07505"
     CDS             3045..3941
                     /gene="pucL"
                     /locus_tag="VF788_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003103002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004846 - urate oxidase activity [Evidence
                     IEA];
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urate oxidase"
                     /protein_id="HEX8934024.1"
                     /translation="MTISLGYHQYGKAEVRLVHIDRSTAVHQIKDVNVTSQLIDDFAA
                     THYTGDNSAVIATDTQKNTVYALARLHGVGPIEEFALRMARHFVDKYSQVNGSRQEVE
                     EFSWSRITTSDSGPHDHAFTRGCAEVRTTVVTNHAADEVVISGLRDLTVLKSTGSEFH
                     GFPQVEYTSLAETSDRILATVVHARWRYVGVGHDWDHIFTGVRQLMLDRFASTHSLSL
                     QQTLYAMGESVLCAYPEIAEIRFSMPNKHHFLVDLSQWGLDNPNEVWYAADRPYGLIE
                     AAIGRDDAPPAGVAWEGINGFV"
     gene            complement(3964..4119)
                     /locus_tag="VF788_07510"
     CDS             complement(3964..4119)
                     /locus_tag="VF788_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6131 family protein"
                     /protein_id="HEX8934025.1"
                     /translation="MIVLGVILLVVGYLLGIPILWTIGIILLVVGAILLLLGSVGRGI
                     GGRRHYY"
     gene            complement(4171..>4974)
                     /locus_tag="VF788_07515"
     CDS             complement(4171..>4974)
                     /locus_tag="VF788_07515"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8934026.1"
                     /translation="PGPVARRVADWANARMAASYDTVVCTTAFAREEFDRIGSPNVVQ
                     VPLGVDLTTFAPSHRDTALRAELSQGAEALLVHCGRLSPEKHVERSVDTVAELHESGA
                     RVRLVIAGDGPRRAALQRRARGLPVTFLGFVQGRSEVARLLATSDVSLAPGPHETFGL
                     AALEALASGTPVVVSRSSALREIIGPTCGAAVADHAPAFAGAVSRLLDAPEPFRRAAA
                     RTRAEEFTWPAAVTGMLAALRGCSAQARDLDLTSRRGSPSVTQVQVQNG"
BASE COUNT          853 a         1723 c         1664 g          734 t
ORIGIN      
        1 ctgcagtgcc gcgctgacca gccctcgtca ggcgagcaga ggtagaccag cgtcgagttg
       61 gtcaggaaca cgaggcggcc accaggccgc aggagcctgg ccgcctcggg gacccagagc
      121 acgggatcgg cccacagcga cgcgccgtac tcggacacgg ccaggtcgaa catggcgtcc
      181 aggagcggga cctgctcagc tggcgcctcg atgagtggga actcgatgcc ggtggcggcc
      241 tgcgcccgct tcgcggacgc caactgggcg ggcgtcgggt ccacgccaac cggtctcgcg
      301 ccgcgcttgg ccagccatgc ggagatgtag gccgtgccgc aacccagctc gatcacgtcc
      361 aggccgtcga cgatgccgag cggcgagttc agggacacct cgctgacatt cgtcgatgaa
      421 gctgcgctgc atcggatgca ggtcatcagg ggtgcccagg ccgacggcgg tgatgatcaa
      481 ccggtcctgt gcgcggaacg ccgggtagac acacgagtgc actggcacac catcgagcag
      541 gaccgaacac gcgccgcagt caccggtgtc gcagcccatc ttcacgtccg tgtggccgag
      601 ctggcgcaac agggtgcgca ggcactggcc agcgactggc tgcgcgtcga ccggagtgcc
      661 gttgacctcg aacctcatga cagctcgacc ctgatctctt cggccagtag gccggtgatg
      721 tgctcgcgcc agtcaggggc gccgtgctcg tcggcgaacc agcgcgggat cccggccagc
      781 gcggcctgca ggtcctcccg atgagcaacg gtcgggaact ggaactggta gggccgctca
      841 gtggcggcgg tcaccgtcag cgagaaccgg ccgtcctcct cgcgccgccc gatcaccagc
      901 gcggccgagc ggcccagcgg tgagagcgcg atccgccggt atgcggtgcg agcgcgcagc
      961 gcgcagcgcg ctgcccggga tctcaaccgc acgcagcacg tcacagggtc ctagcgcggt
     1021 gcgccgtacc ccggtgatga gctcggcgac gggcatccgt gcctcgccgc caccagcggg
     1081 ccacaccacg gctaccccgt ccagagccac agccatcgcg aatcatcggt ccggcgggga
     1141 gttcgagaca gatgttcccg ccgacggtgg cctcgtgcca gatcttgaac gacccggcca
     1201 gcgccgcgca gcactggtgc aggaacggga gtgcggccca cgccgatagc tggtgcaggg
     1261 tgcaggtggc ggcgatggtc aggcccgccg aggtgagctc cagcggcgtc cagcccagac
     1321 catgcagatc gacgatggtg tgcagatcgg gctgcggctc ggcgaacagc caggtgccgc
     1381 cgccgagcac cgcttcacct ggtctcaggg ccagctctgc ccgggacccg gggcgacgca
     1441 gcgcagtgat cgtgtgcaga tccacttagt actcgacccg gtcaggattg gccagccagg
     1501 tgtcgaacgg ctcggtccgg ttgggcattg cgagcgcatc taccgtcata ggccagctcg
     1561 cccggtcgcg ggcgaagagc tcgtggaatt cccggtcatc gaacccgccg cgggcggcgt
     1621 cgtgccggtc cgcggcgtag gcaacccggt ctacccgggc ccagagcgcg gcggacaggc
     1681 acagtgggca cggttcgcag gaggtataga gggttgcgcc ggccagggag aagtggtcgc
     1741 tcgccgtgca cgccgcgcgg attgccacta cctcggcgtg cgcggtggga tcgttgtcac
     1801 gagtgacacg gttctgaccg gtgcccacga gcccgccctc ggcgacgatc accgcgctga
     1861 acggtccgcc tccctcgtgc acgttccgga cggcgagctc gatcaccgtg gccaaccatg
     1921 tctcgtctgg cgacatcggc tcctcaactc cctcggtagg tggagtacgc gaacggggac
     1981 agcagcaggg ggacgtggta gttcccctcc tcgacggtga acgcgatgat cacctcggga
     2041 tagaaacccc gctggctggt cgcggtaaag tacgcggcag tgtcgaatac cagccggtga
     2101 atgcccaccg acccggcggc catggcgctg atccgaccgt caccgtcggt ggtcgcggtg
     2161 gccagcacac cggagggccc ttccagacgg accggcacgc cggctgccgg gcggccgagc
     2221 gcggcatcca ggacgtgcgt gctgtgttga tcccggtcac ccgcccacca gccgtcccag
     2281 ccggagccga ttgatcttga cgagttcgtc ccgcagcacg gtccgctcga tcgtcatgtc
     2341 gttgcccagt cgctcgtgca acatgcggag cagttcctgg cccgagcgcc catccgcgca
     2401 gaccaggtag atgtgcccga atcgagcctc gtattcgcgg ttggcctgcg ccagcgcggt
     2461 gcacatcccc gccgggatgc cgccctgctc acgcctggag gacgcccgca tcgggtccgc
     2521 accgagacgg ggatgcccgg ccagtgcggc ggctacctca tcctcgtcaa gctcggccag
     2581 gacctgatcg gcgcaccgga tcagatcgcc aaccgtgccg tagggcctgc tgcgcgccaa
     2641 ccgctgcgcc cagttcagcg acgagcagca ggacatcagc tcggctactg cgcggtggct
     2701 gggcaatacg ttgaatgtct cgagatccat ccctggattc ttaactgttg agctgtttag
     2761 tcgaaggggc ccgggtcgtc cctgaaatga ctacccgggc atgccctcga atcgcccgat
     2821 cgcgcagttc cgctacgtgc gcactgcggg cactcggtgt gctggctggg cgtcccggcg
     2881 ctggcgtcca gctgttgtga ccgacaatcc atacgatgcc gcagcgcgcc gcgcgacaca
     2941 tgagggtttc ccccgacgcg aaccctgatt gaaacccgag tcctgcctgg caccagcggc
     3001 ttctacgctg accggcactg catgtcggga ggacgaaggc ggctatgacc atctcgctgg
     3061 gctaccacca gtacggcaag gccgaggtcc ggctcgtgca catcgaccgg tccaccgcag
     3121 tgcaccagat caaagacgtc aacgtcacca gccagctgat cgacgacttc gcggccaccc
     3181 actacaccgg cgacaacagc gcggtcatcg ccaccgacac gcagaagaac accgtctacg
     3241 cactggcccg gctccatggt gtcggaccga tcgaggagtt cgcgctgcgc atggcgcgcc
     3301 acttcgtcga caaatactca caggtcaacg gctcgcgaca ggaggtggaa gaattctcct
     3361 ggagccggat caccacatcg gattccggtc cgcacgatca cgcattcacc cgcggctgcg
     3421 ccgaggtacg aaccactgtc gtcaccaacc acgccgcgga cgaggtggtg atctcagggc
     3481 tacgggatct gaccgtgctc aagagcactg gaagcgagtt ccacgggttc ccccaagtcg
     3541 agtacacctc gctggccgag acctccgacc ggattctggc cacggtggta cacgcgcggt
     3601 ggcgctatgt gggcgtcggg cacgactggg accacatttt taccggcgtc cgccagctga
     3661 tgcttgatcg cttcgcgtcg acgcacagcc tgtccctgca gcagacgctg tacgcgatgg
     3721 gagagagcgt gctctgcgcg taccccgaga tcgccgagat ccggttctca atgcccaaca
     3781 agcaccattt cctcgtcgac ctttcacagt ggggactcga taaccccaac gaggtctggt
     3841 acgccgccga ccgaccctac ggactcatcg aggccgcgat cgggcgcgac gacgcaccac
     3901 ccgccggcgt tgcgtgggaa ggcatcaacg gcttcgtgtg aagccgcgcg ctcctggcaa
     3961 tgtctagtaa taatgccgcc ggccgccgat gccacgcccg acggaaccca gcagcagcag
     4021 gatcgctccg actaccagca gaatgatccc gatcgtccac aagatcggga ttccgagcaa
     4081 atacccaact accagtaaga tcacacctag aacgatcacg acgcctcccc cagctccgtt
     4141 gggtcactcg cagattattt tacatcacct ttacccgttt tgtacctgca cttgggtgac
     4201 actgggtgac ccccgccgtg aagtcaggtc aagatcgcgg gcttgggctg agcagcctcg
     4261 aagggcggcc agcatgccgg tgacggcggc gggccaggtg aactcctcgg cgcgggtccg
     4321 ggcagcggcg cgccggaacg gctccggcgc atcgaggagc ctgctgaccg ccccggcgaa
     4381 ggcgggcgca tgatcggcca cagcggcccc gcacgtcggg ccgatgatct cgcgcagcgc
     4441 cgaggatcgg gacaccacca cgggggtgcc ggaggccagc gcctccaggg cggccagccc
     4501 gaaggtctcg tgcggcccgg gcgccagcga gacgtcggag gtggccagca gcctggccac
     4561 ctcgcttcgc ccctgcacga agccgaggaa ggtgaccggc agcccgcggg cccgccgctg
     4621 cagggccgcg cggcgcggcc cgtccccggc gatgaccagc cggacccgcg cgccggactc
     4681 atgcagctcg gcgacggtgt cgacggagcg ttccacgtgc ttttccgggg acagccggcc
     4741 gcagtgcacc agcagcgcct cggctccctg ggacagctcg gcgcgcagcg cggtatcgcg
     4801 gtgtgagggc gcgaaggtgg tcaggtcaac cccgagcggg acctggacga cgttcggcga
     4861 gccgatccgg tcgaactcct cgcgggcgaa cgcggtggtg cacaccacgg tgtcgtagga
     4921 cgccgccatc cgggcgttgg cccagtcggc cacccgccgg gcgaccggac ccgg
//
LOCUS       DASVXZ010000364         4865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_38369, whole genome shotgun sequence.
ACCESSION   DASVXZ010000364 DASVXZ010000000
VERSION     DASVXZ010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4865
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38369"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VF788_07520"
     CDS             <1..472
                     /locus_tag="VF788_07520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934027.1"
                     /translation="LLTRRANSLGATSGQLALPGRRTGRWESASRAACGQLAEDFGIY
                     LSPQSVLGSLDDCLIRGGVVITPVVVWAGSGGMEQELLAVPFTDLDVEPVFVASAGSD
                     PMIRLPLRGEWLLAPTAAILHQFREVVFHRRRTRVTHLSPLPHSAGSARLSGRR"
     gene            521..1357
                     /locus_tag="VF788_07525"
     CDS             521..1357
                     /locus_tag="VF788_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEX8934028.1"
                     /translation="MRLATWNVNSVRSRMPRLLPWLDQRRPDVVCLQETKLPAAAFDE
                     LVRPALTERGYAVAHHGDGRWNGVAIASRVGLDDVVRGLRDEPINPVGVGPEPEARAV
                     SAICAGLLITSVYVPNGRAPDDPHYRYKLEWLAALRDTVAAGNPALSLVCGDMNVAPG
                     DHDVYDPAAYATSTHVTPPERDALKALGLRDVVRERWPDERIFTYWDYRAGMFHQDRG
                     MRIDLVLAGEDVAPRTRAAWVDRAARKGSAPSDHAPVIVDLDEAPDGDCGPVVPPPSA
                     RR"
     gene            complement(1385..2491)
                     /locus_tag="VF788_07530"
     CDS             complement(1385..2491)
                     /locus_tag="VF788_07530"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007028825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934029.1"
                     /translation="MTSHTGYGHLLGTREDPHAQACEARSQPLLLHSMSVFREFFEII
                     FVHHNISTVVEVGVESGQASGLYTSLGASAVYCIEPHPTEEIRAGIAAHQALHLIEKP
                     SPEALAEAPIADLYVLDGDHNYAVVRQELDWILTHAPDTVVVLHDLLWPCARRDLYYE
                     PSHLPAEAKHPASHDGATVWHDDLTPAGLVGLGAYTTAVHAGGERNGVLTAVEDAIAH
                     TADKRWRFALIPAVFGMGVLIRETSSAAADLVHRLRPYCQSHLLATMENNRIALYTRV
                     LQLQYEAVAHADNTDRLAEGRLAQRQEIERLESALSAATAAHIAEKQRLHHENAWLAQ
                     LLQEKSSLLPIGTVLATLRQHAAAYLRKLQLRSR"
     gene            complement(2491..>4865)
                     /locus_tag="VF788_07535"
     CDS             complement(2491..>4865)
                     /locus_tag="VF788_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX8934030.1"
                     /translation="GEVSLFDIWRAMPLSVFEPAVLEELVEAEVDLERRLTVVDLDIA
                     STAALAKKNDIPVVLVSDTYFTEDQLSYLLDRPQLEDLHGARVFRSHQHGADKASGLW
                     RIVLNDLQLSPEQLVHIGDNEVADHSVPAKLGIRTVHYRRVDDGFARVLEREQECVDP
                     FGPFGAGLNAASGDFGLTSLRAKTLQSCTRTTNSPIDVAWRYGASVLGPVLTGFAEWV
                     AHRAHTCGTPVVWCPMREGELLARLVNDAARARGWAVEAKPIWLSRQVTSLAALDRVD
                     QETISGFVRRSYRPTVRHLLGLLRLRPGDVPCLADQLDTLLDQEEIVDRVTLALTETP
                     HLRNRLAVTVTGARERLLRALRRSGAMESPELTLVDLGWGGTIQFQLARALRIARTEI
                     VPSGLYLALDERSARLYQAGLRAEGYLGQSGHPSAVVTACTRSPEVIEQCVNAVCGSL
                     IDFTEDGCPVLGPGTGAPSQDVERRAVQEGILAFQQHWNRYVVESQGDWPDLTGLAHH
                     RLANILTSALRSPTPEEAALFGNWQHEDNFGSTVVTRIIPDDLVAAIPYLSPNDLEDL
                     HMRDAFWPALLAASDTHLSAAAHALATGKVDPMMFDPSGDPFESSLHVRTVDNQWHSG
                     PRRRVRINHNGLSFARMKIDVPAIAEAALAIPGRPAIVRIDWIEATVIADGNPVPQVL
                     RWDEPEDFAGLACSGCVWLGAKLVGFAAPRSALVLPLAARAGSPVSSAQVSVAFAMLP
                     QSVSQLDPRMPAAPWLARLSGRIWAEYRTRGVAGVAGGAARLAARQIAGR"
BASE COUNT          800 a         1542 c         1661 g          862 t
ORIGIN      
        1 gctgctcact cggcgcgcca actcgctggg cgcgacgtct ggacagctag cgctgcccgg
       61 ccggcggacc ggccgctggg agtcggcatc ccgcgcggct tgcggccagc tcgcggaaga
      121 cttcgggatt tacctatcac cgcagtcggt gctcgggtcg cttgacgact gcctcatccg
      181 cggcggagtt gtgatcacgc ccgtggtggt ctgggccgga tccggtggga tggagcagga
      241 attgctagct gtcccgttca ccgatctcga cgtcgagccg gtattcgtgg cgagtgcggg
      301 atcggacccc atgatccgct taccgttgcg cggcgagtgg ctactcgccc ccaccgccgc
      361 aatcctgcac cagttccgtg aggtcgtttt ccaccgccgg cgcacccgcg tcacccacct
      421 ctcccccctc ccgcattccg cgggctcagc gaggttatcc gggcgtcggt agccccgctg
      481 agcccgctga acgcgactcg ggacgcgata gcgtggtccg gtgcggttgg cgacgtggaa
      541 tgtgaactcg gtgcggtcgc ggatgccccg gttgctgccg tggctggatc agcggcgccc
      601 ggacgtggtg tgcttgcagg agacgaagtt gcccgcggct gccttcgacg aactggttcg
      661 ccctgcgctg accgagcgtg ggtacgcggt ggcccaccat ggcgacggtc ggtggaacgg
      721 ggtcgcgatt gcttcccggg tcggcctgga cgatgtcgtc aggggattgc gtgacgagcc
      781 catcaatcca gtgggtgtgg gtccggaacc cgaggccagg gcggtgtctg ccatctgcgc
      841 cgggttgctg atcacctcgg tatacgtacc taacggccgg gctcccgacg acccgcacta
      901 ccgctacaaa ctggagtggc tggccgcgct gcgggacacc gtggccgccg ggaatcccgc
      961 cttgagcctg gtctgtggcg acatgaacgt ggcacctggc gaccatgacg tctacgaccc
     1021 ggccgcctac gccacctcca ctcacgtcac acccccggag cgcgacgccc tgaaagccct
     1081 cggcttgcgc gatgtggtcc gagaacgctg gcccgacgag cggatcttca cctactggga
     1141 ctaccgcgcc ggcatgttcc accaagaccg cgggatgcga atcgacctgg tacttgccgg
     1201 tgaggatgtc gccccacgga cgcgcgcggc ctgggtggac cgggcggcgc gcaagggcag
     1261 cgcccccagc gaccatgcgc cggtgatcgt cgatttggac gaggccccgg acggcgactg
     1321 tggccctgtc gtgccacccc cgtcagcccg acgctgagcg gagcaccgca tcactgttgg
     1381 attcctatcg cgaacgaagc tgcagcttcc ggaggtatgc cgcagcgtgc tggcgcaggg
     1441 ttgccaggac ggttccgatg ggtaagagag agcttttttc ctggagtagt tgtgcgagcc
     1501 atgcgttctc gtggtgcagg cgttgttttt cggctatgtg cgcagcggtc gccgccgaga
     1561 gtgcgctttc tagacgttcg atttcctggc gctgggcgag cctgccttct gccagtctgt
     1621 cggtgttgtc ggcgtgggcg acggcctcgt attgcagctg cagaacccgc gtgtagaggg
     1681 cgatgcggtt gttctccatc gtggccagta ggtgggactg gcagtaggga cggaggcggt
     1741 gcacgaggtc cgcagcggcc gaggacgttt cccggatgag cactcccatc ccgaatactg
     1801 cggggatcag tgcgaatcgc caacgcttgt ccgcggtgtg ggcgatcgcg tcctcgacgg
     1861 cagtgagcac gccgttgcgt tccccgccgg catggacagc ggtggtatag gcacccagcc
     1921 cgacgaggcc cgccggagtg aggtcgtcgt gccacacggt cgctccgtcg tggctggcgg
     1981 gatgcttggc ctcggcgggc aggtgcgagg gttcgtagta gaggtctcgc cgggcacatg
     2041 gccagagcag gtcgtgcagg accaccacgg tgtccggggc gtgggtaagg atccagtcga
     2101 gctcttggcg gacgacggca tagttgtggt cgccgtcgag cacatagagg tccgcgatcg
     2161 gtgcctcggc gagtgcctcg ggtgagggct tctcgatgag atgaagtgcc tggtgtgcgg
     2221 cgatgccagc gcggatctcc tcagtggggt gcggctcgat gcagtacacg gccgaggcac
     2281 cgaggctggt gtacagcccg ctggcctgtc ccgattccac tccgacctcg acgacggtgg
     2341 agatgttgtg gtgcacgaag atgatttcga agaactctcg gaagaccgac atcgagtgca
     2401 gcaggagtgg ctggctgcgt gcttcgcagg cctgggcgtg cgggtcttcg cgggtgccga
     2461 gcagatggcc gtagccggta tgtgacgtca tcaccggcct gcgatctgcc gagcggccag
     2521 gcgggcggcc ccacccgcga caccggcgac accgcgagtt cggtattcgg cccatatccg
     2581 acctgacagc cgcgcaagcc acggagcggc aggcatccgc ggatcgagtt gtgagacaga
     2641 ctgcggcagc atggcgaacg cgacgctgac ctgagccgag ctgaccgggg aaccggcccg
     2701 cgcggccagt ggcagcacca acgccgagcg aggtgccgcg aacccgacca gcttcgcccc
     2761 caaccagacg cagcctgagc aggccaggcc ggcgaaatct tcgggctcgt cccagcgcag
     2821 gacttgcgga accgggttcc cgtcagcaat cacggtggcc tcgatccaat cgatccgcac
     2881 gatcgccggc cgtcctggga tggcgagagc ggcctcggcg atcgctggaa catcgatttt
     2941 cattctggca aagcttaagc cgttgtgatt gatcctgacc cggcggcgag gtccgctgtg
     3001 ccactgattg tctacggtgc ggacatgcag gctggattcg aacgggtccc ccgaggggtc
     3061 gaacatcatc gggtcgactt ttcccgtggc cagtgcatgt gccgccgcgc tcaggtgagt
     3121 atcggatgcg gcgagcagcg ccggccagaa tgcgtcacgc atgtggaggt cttcgagatc
     3181 gttgggcgac aggtaaggaa tagcggcaac gagatcgtcg ggaatgatcc gggtgacaac
     3241 cgtggagccg aagttgtcct catgctgcca gttaccgaac aacgcggctt cctccggtgt
     3301 cggcgatctc agcgcggacg tgaggatgtt ggccagtcgg tggtgagcca atccggtgag
     3361 gtcgggccag tcgccctggg actccacgac gtaacgattc caatgctgct gaaacgccag
     3421 gattccctcc tggaccgccc ggcgttccac gtcttgcgaa ggggctccag tgccaggacc
     3481 cagcacgggg cagccgtcct cggtgaaatc tatgagcgag ccgcacaccg cgttgacgca
     3541 ctgctcgatg acctcggggc tgcgcgtgca ggccgtgacc acggcactgg gatgcccgga
     3601 ctgaccgagg taaccctcgg cccgcaaccc cgcttgatag agccgagccg accgctcgtc
     3661 cagtgccagg taaagccctg acggcacgat ttcggttcga gcgatgcgca gggcccgtgc
     3721 tagctgaaac tgaatcgtcc cgccccatcc caggtcgacc agcgtcaact caggactctc
     3781 catcgctccg ctgcgccgga gagctctcag aagtcgctcc cgagccccgg tgaccgtgac
     3841 cgccagccgg tttcgcaggt gcggagtctc ggtcaacgcc agggtgaccc ggtcgacgat
     3901 ctcctcctga tcaaggaggg tgtcgagctg atcagccagg cacggcacgt cacccggccg
     3961 cagccgcagc agcccgagga ggtgccgcac ggtgggacgg taactgcgtc gaacgaatcc
     4021 ggaaattgtc tcctggtcga cgcggtccag cgcggcgagt gaggtcactt gtcgggatag
     4081 ccagatcggt ttggcttcca ccgcccatcc gcgcgctcgc gccgcgtcat taacaagccg
     4141 ggcgagtaac tctccttccc gcatcgggca ccacaccacc ggggtcccgc acgtgtgcgc
     4201 ccggtgagcc acccattcgg cgaacccggt cagtaccggg cccaacaccg atgcgccgta
     4261 tcgccatgcc acatcgatcg gggaattggt ggtgcgcgtg caggactgga gggtcttggc
     4321 acgcaggctg gtcagtccga agtcaccgct ggcggcattg aggcctgcac cgaagggacc
     4381 gaagggatcg acgcattcct gctcgcgttc caagacgcga gcgaagccat cgtcgactct
     4441 ccggtagtgg acggtgcgga tgcctagctt tgctgggacg ctgtgatcgg cgacctcgtt
     4501 gtccccgatg tgcaccagtt gctcggggct cagctgaaga tcattgagta cgatccgcca
     4561 caggccggat gccttatccg caccgtgctg gtgcgagcgg aacacgcgtg caccatgtaa
     4621 gtcctcgagc tggggccggt cgagcaggta ggagagctgg tcctcggtga aataggtgtc
     4681 cgacaccagg acgaccggaa tgtcgttttt cttggccaat gcggctgtgc tcgcgatatc
     4741 tagatcgaca acggtgagtc ggcgttcaag gtcgacctct gcttccacca gctcttcgag
     4801 gactgctggt tcgaacaccg acaacggcat cgcccgccag atgtcgaata gcgagacttc
     4861 gccgc
//
LOCUS       DASVXZ010000365         3626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1363528, whole genome shotgun sequence.
ACCESSION   DASVXZ010000365 DASVXZ010000000
VERSION     DASVXZ010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1363528"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..581)
                     /locus_tag="VF788_07540"
     CDS             complement(<1..581)
                     /locus_tag="VF788_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020659479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018784 - (S)-2-haloacid dehalogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006805 - xenobiotic metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase type II"
                     /protein_id="HEX8934031.1"
                     /translation="MSQQIDDQVVVLAFDIFGTTVDWRTGVTDQVAEIAAERGVQFDA
                     GTFADEWRDCYLPAMARVRTGEREWAYLDTLHRESLDQLLERHGVSDAFDERARRQLV
                     LAWHRLPAWDDALAGLTRLHARYILAALSNGGFALLTHLVRSAGLPFDCILSAELART
                     YKPDPRVYHTAADLLDLVPAQVMMVAAHGWDLDG"
     gene            837..2465
                     /gene="groL"
                     /locus_tag="VF788_07545"
     CDS             837..2465
                     /gene="groL"
                     /locus_tag="VF788_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014143191.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEX8934032.1"
                     /translation="MAKMIAFDEEARRGLERGMNQLADAVRVTLGPRGRNVVLEKKWG
                     APTITNDGVSIAKEIELEDPWEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREG
                     LRNVAAGANPMALKRGIEKAVEAVSAQLLNSAKEVETKEQIAATAGISAADPSIGELI
                     AEAMDKVGKEGVITVEESQTFGLELELTEGMRFDKGYISPYFVTDPERMETVLDDPYI
                     LLAATKISAVKDLLPILEKVMQSSKPLVIISEDVEGEALATLVVNKIRGIFRSAAVKA
                     PGFGDRRKAMLGDIAILTGAEVISEEVGLKLENTDVSLLGRARKVVITKDETTIVEGA
                     GDPDQIQGRVNQIRSEIDNSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKH
                     RIEDAVRNAKAAVEEGIVAGGGVSLIQAGALAFEKLELTGDEATGANIVRVALEAPLK
                     QIAINAGLEGGVVAEKVRGLKPGWGLNAASGEYEDLIKAGIIDPAKVTRSALQNAASI
                     AALFLTTEAVIADKPEKNPAPAGGGMPDGGGMDF"
     gene            2618..2890
                     /locus_tag="VF788_07550"
     CDS             2618..2890
                     /locus_tag="VF788_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934033.1"
                     /translation="MAESNTILVVAWRAPVAWDGMTEVGGVSLSGAMTGGFALNELIL
                     HGWDLARATDQAFGCDPVLGQAALSFTTRIIEQGFPPLRRPRQRSR"
     gene            3137..>3626
                     /locus_tag="VF788_07555"
     CDS             3137..>3626
                     /locus_tag="VF788_07555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX8934034.1"
                     /translation="MLGAGVFATFGPAAAAAGAGLLIALGIAALVAYCNGIASAQLAA
                     RYPESGGTYRYGRYRLGPVWGFLAGWGFVIGKTASCAAMAMTFGAYTWPAHPTPPAIA
                     AVVILTSVNYLGITKTTRLTRLLVGLTLLALAAVVVAALGGGHADPANLTGWASGGLA
                     GII"
BASE COUNT          634 a         1168 c         1236 g          588 t
ORIGIN      
        1 ccatcgaggt cccagccatg cgcagcgacc atcatcacct gagctgggac gaggtcgagc
       61 aggtccgcgg cggtgtggta cacacgcgga tcgggcttgt aggtccgggc gagttcggcg
      121 gacaggatgc agtcgaaggg cagcccggca gacctgacca gatgggtgag cagcgcgaag
      181 cctccgttgg acagcgcggc caggatgtag cgcgcgtgca accgggtgag cccggcgagc
      241 gcatcgtccc aagccggaag ccggtgccag gcgagcacga gctggcggcg ggctcgctcg
      301 tcgaaggcgt cgctgacgcc gtgacgttcg aggagctggt cgagggactc gcggtgcagc
      361 gtgtcgagat aggcccactc ccgttcgccg gtgcgcaccc gagccatggc tggcaggtag
      421 caatcgcgcc actcgtcggc gaaagtacct gcgtcgaact gcacgccgcg ttctgcagct
      481 atctcggcga cctggtcggt aaccccggtt cgccagtcca ccgtggtgcc gaagatgtcg
      541 aaggcgagca ccacgacttg atcatcaatc tgctgtgaca tcacgagcgt ccttcagtgc
      601 cggaagacag ctgtgcgggg ccgcctcagc aggcgcgcca gcttgcactc gacgggctcg
      661 agtgctaaac acgggttagc actcgaccct atcgagtgcc agctgcatcc acaccgaggt
      721 cgggacggtg agtccggcga aatgctggac gtccgtcgcg ggcaccgagc ctggccgagc
      781 actgtgtcct tgccgcggac aacccgcggc gcccatgacc ggaggaccac accgcaatgg
      841 ccaaaatgat cgcgttcgac gaggaagccc gtcgcggtct tgagcgcggg atgaaccagc
      901 tcgccgacgc cgtcagagtg acgctcggcc ccaggggccg caacgtcgtc ctggagaaga
      961 agtggggtgc ccccaccatc accaacgatg gtgtgagcat cgccaaggag atcgagctcg
     1021 aagacccgtg ggagaagatc ggggccgagc tcgtcaagga agttgccaag aagaccgatg
     1081 acgtcgccgg tgacggcacc acgaccgcca ctgtgctggc ccaggcgctg gtgcgcgagg
     1141 gtctgcgcaa cgtcgccgcc ggcgccaacc cgatggcgct caagcgcggt atcgagaagg
     1201 ccgtcgaggc cgtgtctgcc cagctgctga actcggccaa ggaggtcgag accaaggagc
     1261 agatcgcggc taccgctggc atctccgctg ctgacccctc gatcggcgag ctcatcgccg
     1321 aggcgatgga caaggtcggc aaggaaggtg tcatcaccgt cgaggagagc cagaccttcg
     1381 gcctcgagct cgagctcacc gagggcatgc gcttcgacaa gggctacatc tcgccctatt
     1441 tcgttaccga ccctgagcgt atggagaccg tcctcgacga tccgtacatt ctgctggccg
     1501 ctaccaagat ctcagcggtc aaggacctgc tcccgatcct ggagaaggtc atgcagtcca
     1561 gcaagccgct ggtgatcatc tccgaggatg tcgagggcga ggcactggcc accctggtcg
     1621 tcaacaagat ccgagggatt ttcaggtcgg ccgccgtcaa ggcgcccggc ttcggtgacc
     1681 gccgcaaggc aatgctgggc gacatcgcca tcctcactgg tgccgaggtg atcagcgagg
     1741 aggtcgggct caagctggag aacacagacg tgtcgctgct gggtcgggcc cgcaaggtcg
     1801 tcatcaccaa ggacgagacc accatcgtcg agggtgcggg tgaccccgac cagatccagg
     1861 gccgggtcaa ccagatccgc tccgagatcg acaactcgga ctccgactac gaccgcgaga
     1921 agctgcagga gcggctggcc aagctggccg gcggcgtcgc agtgatcaag gccggagcgg
     1981 ccaccgaggt ggagctcaag gagcgcaagc accgcatcga ggacgcggtg cgcaatgcca
     2041 aggctgcggt cgaggagggc atcgtcgccg gtggtggcgt ctcgctgatt caggcgggcg
     2101 cgctggcgtt cgagaagctc gagctgaccg gtgacgaggc gaccggcgcc aacatcgtcc
     2161 gcgtggcgct ggaggctccg ctgaagcaga tcgctatcaa cgctggtctc gagggtggcg
     2221 tggtggccga gaaggtccgc ggcctcaagc ccggatgggg cctcaacgcc gccagtggcg
     2281 agtacgagga cctgatcaaa gccggcatca tcgacccggc caaggtcacc cgctcggcgc
     2341 tgcagaacgc ggcgtcgatc gcggccctgt tcctcactac tgaggctgtg atcgctgaca
     2401 agccggagaa gaacccggca ccggcgggcg gcggtatgcc cgacggcggc ggcatggact
     2461 tctgagtcca gcacgttgta cccgaaacgg ggccggtccc actctcgcca gggaccggcc
     2521 ccgtttctct gtttgctctg tctgcgcact ggatgcagcc gatgagttct cgtcagccac
     2581 gaggtctacc gaaggagaac cagacgagga gaccatcgtg gcggaaagca acaccatcct
     2641 tgttgtcgcc tggcgggctc ctgtggcctg ggacgggatg actgaggtcg ggggagtctc
     2701 gctgtctggt gcgatgacgg gtggattcgc cctgaacgag ctgatcctgc acggttggga
     2761 tctggcccga gccacggatc aggcattcgg ctgcgatccg gtcttagggc aggcggcact
     2821 gagcttcact acaagaatta tcgagcaggg attcccaccc ttacggcgtc cccgtcagcg
     2881 ttcccgatga tgcgcggacc atcgaccgcc tcctcgcatt ggccggccgc gacccatcgt
     2941 ggacgccctg acaaccgctc tgcgccaacc cccactagcc gttttgttgc cctcgctcga
     3001 gcctcgagat aggcaggtat cgcttctcga tcgcacttag ttgaatttcg gcgtgcaaac
     3061 atcccgggag gattcacatc caccgctggc ccgtcggctg ggtctgaccg acgcggtcgc
     3121 gctgggcctg ggctcgatgc tcggcgctgg ggtgttcgct accttcggac ccgccgcggc
     3181 ggccgccggt gctgggctgc tgatcgcgct gggcatcgct gccctcgtgg cgtactgcaa
     3241 cggcattgcc tcggcgcagc tcgccgcccg ctatccggag tccggcggca cctaccgcta
     3301 cggtcggtat cggttaggac cggtctgggg cttcctggcg ggctgggggt tcgtgatcgg
     3361 caagacggcc agctgtgcgg cgatggcgat gaccttcggc gcttatacct ggcccgccca
     3421 tccgacgcca ccggcgatcg ccgctgtggt gatcctgacc tcggtgaact atctcgggat
     3481 caccaagacc acccggctga cccggcttct ggtcgggctg acgctgcttg ctctggccgc
     3541 ggtcgtggtg gccgcgctgg gcggcggcca cgccgatccg gccaacctca ccggctgggc
     3601 cagcggtggg ctggctggca tcatcc
//
LOCUS       DASVXZ010000366         2689 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_128848, whole genome shotgun sequence.
ACCESSION   DASVXZ010000366 DASVXZ010000000
VERSION     DASVXZ010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128848"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VF788_07560"
     CDS             complement(<1..344)
                     /locus_tag="VF788_07560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEX8934035.1"
                     /translation="MAAMRAAEVLRPLMAEDETETVAVYGALLLIGAVAAARQGDAWT
                     ARSRLREVAPLAERTGECNTLWTAFGPTNVAMYAVTVEIEAGEVVEGLRLAEQIDQRY
                     SPSIERRVAFLV"
     gene            complement(424..2181)
                     /locus_tag="VF788_07565"
     CDS             complement(424..2181)
                     /locus_tag="VF788_07565"
                     /inference="COORDINATES: protein motif:HMM:NF013752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934036.1"
                     /translation="MTAGSPQRDGADFFTAPERVNQRRYEALRAFFVDGLSHAEAGAR
                     YGYTRWAMVNLVREHRAGRLELFAPPRKPGPPPGVAPAKDRARGRVIELRRQGLSTYE
                     ISTRLAGEGIPLNRTSVAEILTEEGFGRLLRRPAEQVSTAAATPGRDTRLPRTAALDF
                     TTWPARLDSAKAGLLLLVPDLVALDLAALVSQAGYPGTRVVPAASWLLSLLALKLTRT
                     RRVSHIDDLLLSDPAAALLAGLATLPKKSALTDYSYRTNHDHQRAFLAALDRKMIAGG
                     LATSDEAIFDLDFHAVMHGGTDPALDKHYVPTRSQRSRSVLTFFAQDCGTHNLVYANA
                     DVSKATQNREVIAFCDHWKAVSGKDPHMLVMDQRVTTQPVLAELDHRGVKFRTLRMRS
                     PALLRHIATLRPADYKTITLDRPSPHNRPHVHESIVRFSNYPTTLRQYIITGLGRDAP
                     TVTITNDTTSTARQLITRYARRMTIEQRLAEIIRAFHADALSSAVNLNVDLDIMLCVL
                     AQALLAALRARLPGYTTVTPDVLQRRFLETPGQIITTADTITVRLDRRAYSPVLRQAA
                     LPQTAVPWWGNRALRYEFA"
     gene            2244..2495
                     /locus_tag="VF788_07570"
     CDS             2244..2495
                     /locus_tag="VF788_07570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934037.1"
                     /translation="MATTRRLFPQLAEAQLDSGHVRHDTITNITDVVPQLDHSNHYLA
                     HSAVSRRRSPHVNPAITPANGWPIQAAKVVSNGLRGNPR"
BASE COUNT          416 a          805 c         1010 g          458 t
ORIGIN      
        1 tctaccaaga aggccactcg tcgctcaatg gacggggaat atcgttggtc gatctgttcg
       61 gccagtcgca ggccctccac gacttcacca gcctcaatct cgacggtcac ggcgtacatg
      121 gcgacgttgg ttggcccgaa cgcagtccac aacgtgttgc actcgccagt tcgttcggcc
      181 agcggggcga cctcacgtaa ccggctacga gcagtccacg cgtcaccctg acgagcggct
      241 gccaccgccc caatcaacaa caaagcgccg tagaccgcca ccgtctcggt ttcgtcctca
      301 gccatgaggg ggcggaggac ctcggcagcc cgcattgccg ccatctccgc tccttcgggc
      361 tggccatcgg cgagcagcac ttgggctaac gcggatttcc atgcagctgg ttcggggcaa
      421 gggtcaggcg aactcgtagc ggagggcgcg gttgccccac caggggacgg cggtctgggg
      481 tagggcggct tggcgcagga cgggtgagta ggcgcgtcgg tcgagtcgga cggtgatggt
      541 gtctgcggtg gtgatgatct ggccgggggt ttcgaggaag cggcgttgca ggacgtcggg
      601 ggtgacggtt gtgtagccgg gcaggcgggc gcgcagggcg gcgaggaggg cttgggccag
      661 cacgcagagc atgatgtcga ggtcgacgtt gaggttgacg gcggaggaga gcgcgtcggc
      721 gtggaacgct ctgatgatct cggcgaggcg ttgctcgatg gtcatccggc gggcgtagcg
      781 ggtgatgagc tgcctggcgg tgctggtggt gtcgttggtg atggtgacgg tgggcgcgtc
      841 gcggcccagg ccggtgatga tgtactgccg cagcgtggtg gggtagttcg agaaccggac
      901 gatcgattcg tgcacgtggg gccggttgtg ggggctgggc cggtctaggg tgatcgtctt
      961 gtagtccgct gggcgcaggg tggcgatgtg gcgcagcagc gccggtgagc gcatccgcag
     1021 ggtgcggaac ttgacaccgc ggtggtcgag ttcggcgagc acgggctggg tggtgacgcg
     1081 ctggtccatg acgagcatgt gcgggtcttt cccgctgacg gctttccagt ggtcgcagaa
     1141 ggcgatgacc tcacggttct gggtggcctt ggacacatca gcgttggcgt agacgaggtt
     1201 gtgggtgccg cagtcttggg cgaagaaggt cagcacggag cgggagcgct gcgagcgggt
     1261 gggcacgtag tgtttgtcca gggcggggtc ggtgcccccg tgcatgacgg cgtggaagtc
     1321 caggtcgaag atcgcttcgt cgctggtggc cagcccgccg gcgatcatct tgcggtccag
     1381 ggcggcgagg aaggcgcgct ggtggtcgtg gttggtgcgg taggagtagt cggtgagcgc
     1441 gcttttcttc ggcagggtgg ccaacccggc cagcagcgcc gcggccgggt cggacagcag
     1501 caggtcatcg atgtgggaaa cccgccgggt gcgggtcagc ttcaacgcca gcagcgagag
     1561 cagccagctc gcggcgggta cgacccgggt gccgggatag cccgcctggg agaccagggc
     1621 ggccagatcg agcgcgacca ggtcgggcac cagcagcaac agtccggcct tggccgagtc
     1681 cagccgggcg ggccaggtgg tgaagtccaa tgccgcggtg cggggcaggc gggtgtcgcg
     1741 gccgggggtg gccgccgcgg tggagacctg ctcggcgggc cggcgcagca gccggccgaa
     1801 gccttcctcg gtgaggatct cggcgacgct ggtgcggttg agcgggatac cttcaccggc
     1861 cagccgcgtg gagatctcgt aggtggacag gccttggcgg cgtagttcga tcacccggcc
     1921 gcgggcgcgg tctttggccg gagccacccc gggcggcggg ccgggcttgc ggggtggggc
     1981 gaacagctcc aggcgcccgg cccggtgctc gcgcaccagg ttcaccatcg cccaccgggt
     2041 atagccgtag cgcgccccgg cttcggcgtg gctgagcccg tcgacgaaaa acgcgcgcag
     2101 cgcctcgtaa cggcgctggt tgacccgctc cggcgcggtg aagaaatccg caccgtctcg
     2161 ttgtggtgat cctgctgtca cggtgggagt tgtaccagga caccagcctc cgtttgcgga
     2221 tctccaggtg cctcaggtcc ccaatggcca ccacgcgccg gctgtttccg cagcttgctg
     2281 aggcgcagct ggactccggc cacgttcgtc acgacacgat aacgaatatc accgatgtcg
     2341 ttccacagct ggaccacagc aatcactacc tggcgcacag cgcagtcagc cgcagacgat
     2401 ccccgcacgt caaccccgct atcacaccag ccaacgggtg gccgatccaa gccgccaagg
     2461 ttgtgtcgaa cggcctgcgc ggaaatccgc gctaactatt taggctaact atttatcggc
     2521 gcggacgcgg ccgctaacta ttggcgcgga cgcggccgct aagcatgaga tggccgaccc
     2581 cggtgtccat ccggtaggcc gcacgcaact ctggtgcacc agcttgctca ggttgtccag
     2641 atcctggctg atccccggcc agtcccgcac cggcagctgt gggtccatc
//
LOCUS       DASVXZ010000367         6046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_557575, whole genome shotgun sequence.
ACCESSION   DASVXZ010000367 DASVXZ010000000
VERSION     DASVXZ010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6046
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_557575"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VF788_07575"
     CDS             <1..219
                     /locus_tag="VF788_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934038.1"
                     /translation="VPVAWIQPVHVLAAEQADQLVGQLRIRCEQQLSRVKRPVEYRIV
                     AGLPRTATGKVLRRQLREDAAHRGVSSR"
     gene            216..1430
                     /locus_tag="VF788_07580"
     CDS             216..1430
                     /locus_tag="VF788_07580"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX8934039.1"
                     /translation="MTVAPEAAVRVNSQDHIYAVDLVRVLTFACVTAVHTVATINPAD
                     SVPAGGAAMLLHFTREAFFALTAFVLVHRYRNRLRLRPFWRRRFLLVGVPYVIWSVIY
                     SGLALITTPLPPTAALIQLARNLLTGTASYHLYFLVVTMQFYLLFPLFLRLLRASAVR
                     RGGQCALLVIGAALQLGINAVLHWAQPNWAHPSGIAAKLLQYDGSFVGSYMFYLLLGG
                     LAALHSDRVQAWVRGHPVVVLGALLFTGVAAEGWFLRSVHHGIPALWASDVFQPVMVP
                     WCAAVITALFALGVAWAARRGTGLGSRVVEISSDRSFGVFLIHPMALWAWTLGPSEWL
                     SLRVPALSSTVIAFLAVVLASVLVVELLRCSPLSLMLTGKRRTRVSAPAHSDRSESSV
                     PTEPIRLGAGRT"
     gene            1441..2205
                     /locus_tag="VF788_07585"
     CDS             1441..2205
                     /locus_tag="VF788_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HEX8934040.1"
                     /translation="MIDTQLRLPDLDTKPRQRGLTMVIDPGMFTGQFEDAVDSIGEFV
                     DLVKFGWGTCLVTKDIKRKIDILHSAGIDFYFGGTLFERYALEGLVSEWLALCRGLGA
                     THVEVSNGAIPLDNTAKARWVARLAGEFVVISEVGFKDAARSDALAPGHWISFIEEDF
                     AAGAHLVTTEARESAQSRICRSDGEPRHELVGEIVGSGIDLDRLLFEAPNKALQTYFL
                     RRIGSSANLGNVRADDVIALETLRRGLRSDTLPVTL"
     gene            2205..2603
                     /locus_tag="VF788_07590"
     CDS             2205..2603
                     /locus_tag="VF788_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8934041.1"
                     /translation="MRNSVTVFHLAIPARNLDEARRFYVDGLGCTLARRYADRITLNF
                     FGDQVVCHLSDHVDTAPTLYPRHFGVTFREREDWEGLLDVARARNLPFFVYPFRRFEH
                     RPEGHDTFVLRDPSNNLLEFKYYDNPQMIY"
     gene            complement(2620..3879)
                     /locus_tag="VF788_07595"
     CDS             complement(2620..3879)
                     /locus_tag="VF788_07595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008832 - dGTPase activity [Evidence IEA];
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA];
                     GO_process: GO:0006203 - dGTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEX8934042.1"
                     /translation="MGDPYTTHDWARALPEPAKRATLPGSGPERRSPFARDRARVLHS
                     AALRRLAGKTQVVGPGEGDVPRTRLTHSLEVAQIGRGIAVELGCDPDVVETAGLAHDI
                     GHPPFGHNGEQLLNEVAATCGGFEGNAQTLRILTRLEPKLLEPATGRSYGLNLTRASL
                     DATVKYPWSRNGTVKFGFYADDAEVFHWLRDRAPEGTRCLEAQVMDWADDVAYSVHDV
                     EDGILAGRISLDTLGDPIERALLAELAAKHFSVLPSAESEAAAVGLLALPVLDALRHY
                     DGSLGAQVALKELTSELVGRYVSAVVSATVAQFGLGPLGRYRADLVIPSQAAAEVALL
                     KAMALRFVMSDPHRLALQGAQREMLAELCAALVQRAPDPLDPALALAWLRARDDSARL
                     RVIVDQVSALTDAQAVRWHAALLPGNS"
     gene            complement(3886..4509)
                     /locus_tag="VF788_07600"
     CDS             complement(3886..4509)
                     /locus_tag="VF788_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEX8934043.1"
                     /translation="MLPVALARLAFGAVLVGALVVGGTAFRVWQVARGDDRDKADVVV
                     VLGAAQYDGTPSAVLGSRLDHAARLWRSGVAPVIVTVGGRRIGDNHTEAEAGRNYLAS
                     YGVPKDAVVPIGEGRDTLESLQAVARRAGTAGWHTAVIVSDPWHSLRARTMADDLGFA
                     SWTSPTRSGPIVQTRTIQAQYIVRESAALLHYRFTHAPAESFGTDLG"
     gene            complement(4556..5587)
                     /locus_tag="VF788_07605"
     CDS             complement(4556..5587)
                     /locus_tag="VF788_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEX8934044.1"
                     /translation="MDTVNTEETRQRRQAGDALRRWAAQGRPAGVVRVLERHGFGTVA
                     TGQLLAGTGDGDRAGAVFEGTMDTVALPLLSSAVATPGTAKGHVTEPDALAAGLACSG
                     GAQLLGHPLPVPAAAALGTSLADGEPCALASTVDGSAVLVAAGSGLTDVVGTLGGPEV
                     DEVVLARLRELARIGATATEQGDAAGTPVLIDVWVPVTTMLIVGAGAIGAALSAQCAL
                     LGWAVRTETELEPAIAAAKEFTAVDVLALLDHGPAFDAVLVELLRSGRGFCGALGSRH
                     TQEVRRRRLRAAGITEEELARLHGPLGLDLGAASPAETAVSVVAEVLAVRRGRSGGPL
                     AAAAGRIGG"
     gene            complement(5618..>6046)
                     /locus_tag="VF788_07610"
     CDS             complement(5618..>6046)
                     /locus_tag="VF788_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010695640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEX8934045.1"
                     /translation="VIEPAAGVARSMMAFLLDAYAEDEAPNAKGGVDRRVVLRLDRRL
                     APVKVAVLPLSRNADLSPKARDLAAALRRHWNVEFDDSGAIGRRYRRQDEIGTPFCVT
                     VDFDSLNDHAVTVRERDAMTQERVAMDQVEAYLAARLVGC"
BASE COUNT          987 a         2125 c         1932 g         1002 t
ORIGIN      
        1 gtgccggtgg cgtggataca gccggtgcac gtgctggccg ccgagcaagc cgatcagctc
       61 gtggggcagc tgcgtattcg gtgtgagcaa cagctcagcc gggttaaacg cccggtagag
      121 taccggatcg tcgcaggtct gcctcggaca gccactggca aggtgctgcg ccgccagctg
      181 cgggaggacg ctgcgcatcg cggggtgtcc tcccggtgac ggtggctccc gaagcagccg
      241 tgcgcgtcaa cagccaggac cacatctacg cggtggacct ggttcgggta ctgaccttcg
      301 cctgtgtcac cgcagtgcac accgtggcta ccatcaatcc agccgacagc gtgccggcgg
      361 gtggcgccgc gatgctgttg catttcaccc gtgaggcgtt cttcgccctc accgcattcg
      421 tgctcgtgca ccgctaccgg aaccggcttc gcctccggcc attctggcga cgccggttcc
      481 tgctggtcgg tgtgccctac gtgatctggt cggtgatcta cagcgggctg gcgctgatca
      541 cgacgccgct gccacccacc gcggcactca tccagctcgc ccgcaacctg ctcaccggca
      601 cggcctcgta ccacctgtac ttcttggtcg tcaccatgca gttctacctg ctgttcccgc
      661 tgttcctccg gttgctgcgg gcatccgcgg tacggcgagg tgggcagtgc gcgctgctgg
      721 tgatcggtgc ggctctccag ctcggcatca atgcagtgct gcactgggcc caaccgaact
      781 gggcacaccc gagcgggatc gccgcgaagc tgttgcaata cgacgggtca ttcgtcggca
      841 gctacatgtt ctacctgctg ctcggcgggc tggcggcgct gcactccgac cgggtgcagg
      901 cctgggtccg cgggcatccg gtggtggtgc tcggggcact gctgttcacc ggtgtcgcgg
      961 ccgagggctg gttcctcagg tcggtacacc acggcatccc cgcgttgtgg gcgtcggatg
     1021 tgttccagcc ggtgatggtg ccctggtgcg cggccgtcat caccgcattg ttcgcgctcg
     1081 gcgtggcgtg ggccgcacgt cggggaaccg gcctgggttc acgggtcgtc gagatcagct
     1141 ctgaccgctc attcggggta ttcctgatac atccgatggc gctgtgggcg tggacgttgg
     1201 gtccttcgga gtggctatcc ctgcgggtgc ccgcgctctc gtcgaccgtc atcgcattcc
     1261 tcgccgtcgt cctggcgtct gtgctggtag tcgagttgct gaggtgcagc ccgctcagcc
     1321 tgatgctcac cggaaagcgc cgtacccgag tgagtgcacc cgcccattcc gatagatccg
     1381 agtcttccgt cccgaccgag ccgatcaggc tcggcgcggg gcggacatga ggaggcagtc
     1441 gtgatcgaca cccaactacg tttaccggac ctcgatacca agccgcggca acgtgggctc
     1501 acgatggtga tcgatcccgg aatgttcacc ggtcaattcg aggacgccgt ggacagcatc
     1561 ggggaattcg tggacctcgt gaagttcggc tggggtacct gcctggtcac caaggacatc
     1621 aaacggaaga tcgacatact gcacagcgct ggaatcgact tctacttcgg tggcacgctg
     1681 ttcgagcgct acgcgctgga ggggctggta tcagagtggc tcgccctatg ccgtggcctg
     1741 ggcgccacgc acgtcgaggt gtccaacggc gcgatccctc tcgacaacac agcgaaggcc
     1801 cgatgggtgg cccggctcgc cggcgaattc gtcgtgatca gcgaggtcgg cttcaaggat
     1861 gccgcgcgtt ccgacgccct ggcaccaggg cactggatct ctttcatcga ggaagacttc
     1921 gccgccggcg cccacctcgt caccaccgag gcgagggaga gcgcccaaag caggatctgc
     1981 cgctccgacg gcgaaccacg ccatgagttg gttggcgaga tcgtcggctc cggtatcgat
     2041 ctcgatcgac tgctcttcga ggctccgaac aaagccctgc agacctattt cctccgccgg
     2101 attggttctt cggccaactt gggcaatgtg cgggccgacg acgtgatagc gctcgagacg
     2161 ctgcggcgtg gtttgcgctc ggacaccttg ccggtgacgc tgtgatgcgg aattccgtga
     2221 ccgtgttcca cttggccatc ccggcccgga acctggatga ggcacgacga ttctacgtcg
     2281 atggccttgg ctgcacgctg gcccgacgct acgcagatcg catcaccctt aacttcttcg
     2341 gtgaccaggt cgtctgtcac ctttccgacc acgtcgatac agcccccacc ctttatccca
     2401 ggcacttcgg agtcacattc cgggaacggg aagactggga agggctgctc gacgtggcca
     2461 gggcacgcaa cctgccgttt ttcgtctatc ccttccgccg tttcgagcac agacccgaag
     2521 gtcacgatac gttcgtactg cgagatccct cgaacaacct gctcgagttc aagtactacg
     2581 acaatccgca gatgatttac tgaccagcac cgtggttggt cacgagttgc caggcagcag
     2641 tgccgcgtgc cagcgcaccg cctgcgcgtc ggtcagagcg gaaacctgat cgacgatcac
     2701 ccgcagccgc gcgctgtcgt cgcgagcccg cagccacgcc agagccagcg ccgggtccag
     2761 cgggtccggc gcccgttgca ccagggccgc gcacagctca gccagcattt cccgttgagc
     2821 gccttgcagc gccagccgat gcggatcact catcacgaac cgcagtgcca tggctttcag
     2881 caacgccacc tctgcggctg cttgactcgg aatgacgaga tccgcccggt aacgccccaa
     2941 cggaccaagg ccgaactggg caactgtggc agaaacgacg gccgagacgt agcgccccac
     3001 cagctcgctg gtgagctcct tgagcgcgac ttgggcgcct aacgatccgt cgtagtggcg
     3061 cagggcatcg agcaccggga gggccagcag gcccaccgcg gcggcctccg actccgcgct
     3121 gggcaggaca ctgaaatgct ttgcggcgag ctcagcgagc agtgctcgct cgatcggatc
     3181 gcccagggta tccagggaga tgcgaccggc caggatccca tcctccacgt cgtgtaccga
     3241 gtaggcgacg tcgtcggccc agtccatcac ctgcgcttcc aggcatcgcg tcccctcagg
     3301 cgcgcgatcc cgcaaccagt ggaacacctc cgcgtcatcg gcgtagaagc cgaacttgac
     3361 cgtcccgttg cgcgaccacg gatacttgac ggtggcgtcc agcgatgctc tcgtgaggtt
     3421 gagtccgtag cttcggccag tcgcgggttc aagcagcttg ggctccaacc gggtgagaat
     3481 tcgcagcgtt tgtgcgttgc cctcgaaccc gccacaagtc gcggcgacct cgttgaggag
     3541 ctgttccccg ttgtggccga agggaggatg gccgatgtcg tgcgccaatc ccgcggtctc
     3601 caccacgtcg ggatcacaac cgagttcaac ggcgattccg cggccgatct gggcgacttc
     3661 cagcgagtgg gtcagccggg ttctgggtac gtccccttcc cccgggccaa ccacctgagt
     3721 cttgcctgcc agccgccgca gcgccgcgga gtgcagcacg cgggctcggt cccgggcgaa
     3781 ggggctgcgg cgttccgggc ccgagcccgg cagcgtcgcc cgtttggccg gctccgggag
     3841 ggcccgagcc cagtcatgtg tggtgtaggg gtcacccacc gggtctcacc ccagatcggt
     3901 gccgaacgac tcagcagggg catgtgtgaa gcggtaatgc agcagcgcag cactctcgcg
     3961 cacgatatat tgcgcctgga tggtgcgggt ctgcacgatc ggaccacttc gggtgggcga
     4021 cgtccacgag gcgaaaccca gatcgtcggc catcgtgcgg gcccgcagcg aatgccaagg
     4081 atcgctgacg atcaccgcag tgtgccagcc cgcagtcccc gctcggcgcg ccaccgcttg
     4141 gaggctctcc agggtgtccc ggccttctcc gattggtacc acggcgtctt tggggacgcc
     4201 gtaggacgcg aggtagttac ggccggcctc ggcttcggtg tggttatcgc cgatccgccg
     4261 accaccgact gtgacgatca ccggcgcgac cccgctgcgc cacagccgcg cggcgtgatc
     4321 caaccgggag cccagcaccg ccgacggtgt cccgtcgtac tgggccgcgc ctagcaccac
     4381 cacgacgtcg gccttgtccc gatcatcgcc ccgagccacc tgccaaaccc ggaacgcggt
     4441 gccgccgaca acgagagctc ccaccagcac cgctccgaag gcgagccggg ccagcgccac
     4501 gggtagcatg gagcccacgg accggtagcc cgattgctgg cttcgccggc ggtggtcagc
     4561 caccaatgcg gcccgccgcg gcggccagcg gaccaccgga acggccccgt cgcacggcga
     4621 ggacctccgc gaccacggat accgccgtct ccgctgggct ggccgcgccc aagtccagac
     4681 ccaacggtcc gtgcagccgc gccagctcct cctcggtgat cccggcggca cgtaaccggc
     4741 gtcgccggac ctcctgggta tgccgggatc ccagcgcacc acagaaacca cgcccggacc
     4801 gcaacagctc caccagcacc gcatcgaagg ccgggccgtg gtcgagcagc gccagcacgt
     4861 cgacggcggt gaactccttc gccgcggcga tcgcaggctc caactcagtc tcagttcgca
     4921 ccgcccagcc cagcaacgca cactgtgccg agagcgcagc cccgattgcc ccggcgccca
     4981 cgatcagcat ggtcgtcacc ggcacccaca catcgatcaa caccggggta ccggcggcgt
     5041 caccctgttc ggtggccgtc gcgccgatcc gggcgagctc acgcagccgc gccaggacca
     5101 cctcgtcgac ctccggtccg ccaagagtgc cgacgacatc ggtcagccca gacccggccg
     5161 cgaccagcac cgccgacccg tcgactgtcg acgccaatgc gcacggctct ccatcagcga
     5221 gcgaggtacc caacgcagcc gcagccggca ccggcagtgg gtggcccagc agctgcgcgc
     5281 ctccgctgca ggccagcccg gcggccagcg cgtcgggttc ggtgacatgt cctttcgcag
     5341 tgccgggcgt ggccaccgca gagctcagca acgggagcgc cacggtgtcc atcgtgcctt
     5401 cgaacaccgc acccgcccgg tccccatcgc cggtgccggc cagcagttgc ccagtggcca
     5461 cagtgccgaa accgtgccgc tccaacaccc gcaccacgcc tgcggggcgg ccctgggcag
     5521 cccagcggcg aagcgcgtca ccggcctgcc gacgctggcg ggtttcttca gtgttcaccg
     5581 tgtccatacc gaccatgctt ccagaatgaa ccgcgattca gcagcccacc aagcgagccg
     5641 cgagataggc ctcgacctgg tccatcgcaa cccgctcctg agtcatggcg tcacgctcgc
     5701 gcaccgtgac cgcatggtcg ttcagcgagt cgaagtccac cgtcacacag aacggggtgc
     5761 cgatctcgtc ttgacggcgg tagcggcggc cgatcgcacc ggagtcgtcg aattccacat
     5821 tccagtgccg ccgcaacgcc gcggcaaggt cccgggcctt gggagacagg tcggcgttgc
     5881 gagacagcgg gagcaccgcc accttcaccg gggcgagccg ccggtccagc cgcagcacga
     5941 cgcggcggtc caccccaccc ttggcgttgg gcgcttcatc ttcggcgtag gcgtcgagca
     6001 ggaaggccat catggaccgg gcgacgccag cggcaggctc gatcac
//
LOCUS       DASVXZ010000368         6900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_39358, whole genome shotgun sequence.
ACCESSION   DASVXZ010000368 DASVXZ010000000
VERSION     DASVXZ010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6900
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39358"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VF788_07615"
     CDS             <1..472
                     /locus_tag="VF788_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934046.1"
                     /translation="LLDIPQAKAEELMDTLVDLHLLDVAGRDASGRLRYRFHDLLRAY
                     ARELVAVAEPENCRFAALDRAFGGWLALAEEAGRTLADSSFAGTPVTVTCWRPEESVV
                     RSVLTDPAGWFEAEWAALMLATARRTRNDGREGMAPRDLGMALVPVRAGAIPTG"
     gene            complement(494..1828)
                     /locus_tag="VF788_07620"
     CDS             complement(494..1828)
                     /locus_tag="VF788_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEX8934047.1"
                     /translation="MIASRSPHSTTPGTRTYVLDTSVLLSDPWALSRFDEHEVVLPLV
                     VIGELEGKRYHAELGWFAREALRLLDDLRRSNGRLDAPVPIGELGGTLQVELNHCDPA
                     VLPSGFRTDTNDSRILACALNLVADGRNVTLVTKDMPLRVKAGAVGLTADEYHAQDVV
                     PSGWTGTTDIEVGSAVLDELYKDGVADLTEHPDAASLPCHTGLRLLAGTATALGRITA
                     DKRVKLVRGDREAFGLRGRSAEQRIALDLLLDPEVGIVSLGGRAGTGKSALALCAGLE
                     AVMERGAHRRVIVFRPLYAVGGQELGYLPGSENEKMQPWAQAVFDTLGAIVSPNVIDE
                     VIDRGMLEVMPLTHIRGRSLHDAFVIVDEAQSLERNVLLTVLSRLGTGSRVVLTHDVA
                     QRDNLRVGRHDGVAAVIEKLKGHPLFAHVTLTRSERSPIAALVTEMLEDYAH"
     gene            complement(2239..3459)
                     /locus_tag="VF788_07625"
     CDS             complement(2239..3459)
                     /locus_tag="VF788_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEX8934048.1"
                     /translation="MDVVREYLLLGLRFDRLIEGFVDSYTGDPALRRAVDNEPRPDPA
                     ILARRAGELRAELPAAGLSEPRARFLDSHLAALECSGRVLAGQQVGFMAEVAAYFDVV
                     IEPGDTDAYRQAHAEIGRLLPGADPLADRLAAYRARDEIPPERLEAAVHALSSALRDR
                     VRADYGLHPQETVQYEVVTDKPWSGFNYYLGDFRSRVAINADLGHRMAQLPHLVAHES
                     YPGHHTEHCRKEAGLVRTQHQAEQTIFLVNTPACLMAEGLADLGLRVAVGAGWGPWAA
                     EILDDLGLRMDGELAERLELATAGLLGVRQDAALMLHDQGADPADVLTYLQRWLLVPE
                     PRAKQMVRFLTDPLWRAYTTTYVEGYRLLRSWLDARPPAQPLSQRYLRLLDEPLIPSA
                     LRAEGIVSGESCVH"
     gene            complement(3524..4288)
                     /locus_tag="VF788_07630"
     CDS             complement(3524..4288)
                     /locus_tag="VF788_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020631442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEX8934049.1"
                     /translation="MQDLVYALYERRLARQLGSANRPRHVAVIMDGNRRWAKEVGFAD
                     VSDGHRVGAAKLVELLGWCRETDVEIATFWLLSPDNLRNRPPDQLQPLLEIIADVVDE
                     LCAPDTPWRVRVVGALDLLPSDMAQRLTSAAARTRDRPGLTVNIAVGYGGRQEIADAL
                     RKLLLKHAEAGTTMEELAEVLDVEQIAEHLYTSGQPDPDLVIRTSGEQRLSGFLLWQS
                     AHSEFWFCDAYWPAFRKVDFLRALRDYTARHRRFGS"
     gene            complement(4353..5039)
                     /locus_tag="VF788_07635"
     CDS             complement(4353..5039)
                     /locus_tag="VF788_07635"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016336362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEX8934050.1"
                     /translation="MSQQQWTAVDNYITDTLVGTDEELAAALAASDAGGLPAIAVSPA
                     QGKLLNLLATLTNARRILEFGALGGYSTIWLARALPPDGHLVTLEHQQKHADVARANI
                     ARAGLADLVDVRVGAALDALPRLAEELETGHAEPFDLVFIDADKEHNAEYFAASVRLT
                     RPGGVIIVDNVVRGGEVVDARSENTAVLGTRRLIESISAEPLVSATVIQTVGMKGYDG
                     FAIAIVGKPA"
     gene            complement(5118..5705)
                     /locus_tag="VF788_07640"
     CDS             complement(5118..5705)
                     /locus_tag="VF788_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005168182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934051.1"
                     /translation="MVGRGRPHGGRAGGRWHGRGGWQQADLPPADDAKAWFAGRLPDG
                     WFTGDVEVTVDREEIHVMGELPALREEFADDAERAAAEAGRISRFREDSRDERIEIAR
                     QAEHRYGRKVAWGARLGGTQEMFTTLSVPVMTRLRQPERLVLDTLVDAGVARSRSEAL
                     AWAVRLVGEHAQQWLGELQQAMATVDDLRARGPEL"
     gene            complement(5979..>6900)
                     /locus_tag="VF788_07645"
     CDS             complement(5979..>6900)
                     /locus_tag="VF788_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acylglucosamine 2-epimerase"
                     /protein_id="HEX8934052.1"
                     /translation="VLQLPAEPDDADRWERVRTALLATRADRPQPGRDDKVVTEWNGM
                     AITTLAEAGGVLGRPEWIAAAVAAAELMLGTHVVDGRLRRSSRDGVAGTAAGVLADHA
                     WLVEGLLALHQVTGEDRWLNEALPVLELAQKHFADPDHPGAWFDTAADAEVLFRRPTN
                     MTDNATPAGASALAAALVTAAALTGSEPYRVAAEASVARAGLVPAKAPQAAGHWLTTA
                     EALAHGPVQIAVMGAAGDRARTALEAQARWAAPGGAVVLGGEPGAEHPMLAGRDLIAG
                     VPAAYVCHGFVCDRPVTSAEELRTQLRQPR"
BASE COUNT         1130 a         2453 c         2203 g         1114 t
ORIGIN      
        1 actacttgac attcctcagg ccaaggcaga agagctgatg gacactctgg tcgatctcca
       61 tctgcttgac gtggcggggc gcgacgcgtc cggacggttg cgttaccgct tccacgatct
      121 gctgcgcgcc tacgcccgtg aactagtcgc cgttgcggag ccggaaaact gccgattcgc
      181 tgcgctggat cgtgcgttcg gcggctggct ggctctggcc gaggaggccg gacggaccct
      241 ggccgattcc tccttcgccg ggacacctgt caccgtgacc tgctggcgcc cggaggagtc
      301 agtcgtcaga tccgtactca ccgacccagc cggctggttc gaggctgagt gggccgccct
      361 catgctcgcc accgcgcggc gaacgcgcaa tgacgggcga gaaggtatgg caccacgcga
      421 tctcggcatg gcgctggtgc cggtccgggc cggtgcgatc cctaccgggt agggggatca
      481 ggttggtcgc tgctcagtgc gcgtagtcct ccagcatctc ggtgaccagc gctgcgatcg
      541 gcgagcgttc cgagcgggtg agagtgacgt gcgcgaacag cgggtgcccc ttcaacttct
      601 cgatcaccgc agcgacgccg tcatgccggc cgacccgaag gttgtcccgt tgcgccacat
      661 cgtgcgtgag caccacccgc gaaccggtgc ccagtcggga gagcaccgtg agcagcacgt
      721 tgcgttccag ggactgcgcc tcgtcgacga tgacgaaggc atcgtgcagg gatctgccgc
      781 ggatgtgggt caacggcatc acttcgagca ttccgcggtc gatcacctcg tcgatgacat
      841 tcggcgagac gatcgcgccg agggtgtcga acaccgcctg cgcccagggc tgcatcttct
      901 cgttctcgct acccggcagg taccccagct cctggccacc cacggcgtac aagggccgga
      961 aaacgatcac tcgccggtgc gcgccgcgct ccatcaccgc ttccagcccc gcgcacagcg
     1021 cgagggccga cttgccggtc ccggcccggc cgccgaggga gacgatgccc acctcagggt
     1081 cgagcagcag atccagtgcg atgcgctgct ccgctgagcg cccgcgcagt ccgaatgcct
     1141 cgcggtcccc gcggaccagc tttacccgct tgtccgcggt gatccgtcct aacgcggtcg
     1201 ccgttccggc gagcagccgc aatccggtgt ggcagggcag gctcgcggca tccgggtgct
     1261 cggttaggtc ggcaacaccg tccttgtaga gctcgtcgag caccgctgac ccgacctcga
     1321 tatcggtggt tccagtccag cccgagggca ccacgtcctg cgcgtggtac tcgtcggcgg
     1381 ttaatccaac agcgcctgcc ttgactcgca gcggcatgtc cttggtgacc agcgtgacgt
     1441 tgcgaccgtc agcgaccagg ttcagcgcgc aagccaggat ccttgagtcg ttagtgtcgg
     1501 tacggaatcc cgacggcagc accgccgggt cacagtggtt gagctcgacc tgcaaggtgc
     1561 cgcccagttc accgatcggt accggcgcgt ccaaccggcc gttcgaccgc cgcagatcat
     1621 ccagcaaccg cagcgcttcc cgggcgaacc agcccagttc cgcgtgatac cgcttgcctt
     1681 ccagttcccc gatgaccacg agtggaagta ccacctcgtg ctcgtcgaat cggctgagtg
     1741 cccacgggtc ggacaacagt actgacgtat ccagcacgta ggtacgggta ccgggggtgg
     1801 tggagtgagg cgagcgagaa gcgatcacgg cagctccctg gcgtgcgcgg cacccacgcc
     1861 cgctactcgg tgggccggcc ggcctctggt tgatcgccac cgcagcgccc cggtcgggct
     1921 cagcgggacc gaccacaagg gccgggtgcc gaccctcccg tgcttgccgt gagcggttta
     1981 cccgcccgat cgacatcagc cacgaccagg gcctcccgta gcgagacgcg tcgaacacgt
     2041 cccactgcca ccgcacggta cccgtctgtg acccatcctg gcaggtatcc gcacaggtga
     2101 ttcgccaaga ggtcgtgagc gctgaataca ccgtccaaat accacgaacg tccgcgagcg
     2161 tgcacagccc ccctctggtg atcaacagtg gagtcgctcg ggccttacgg gacagctctg
     2221 ctgtcgatct cggaaggctc agtgcacgca gctctcacca ctcacgatcc cctcagcgcg
     2281 cagcgctgaa gggatcagcg gctcgtcgag cagccgcagg taacgctggc tcagcggctg
     2341 cgctggcggg cgggcatcca gccagctgcg cagcagtcgg tatccctcga cgtaggtagt
     2401 ggtgtaggca cgccacaacg gatctgtgag aaagcgcacc atctgtttgg cccgcggttc
     2461 gggcaccagt agccaccgct gtaggtaggt cagcacgtcc gccggatcgg cgccctggtc
     2521 gtgcaacatc agcgcggcat cctggcgtac accgagcagg cccgccgtcg ccaactcaag
     2581 tcgctcagct agctcaccat ccatccgcaa tcccagatcg tccaggatct ccgcggccca
     2641 gggcccccat ccggccccga ccgcgacgcg caatcccagg tcagccagtc cctccgccat
     2701 caggcacgcc ggggtgttca ccagaaagat cgtttgctcc gcctggtgct gtgtccggac
     2761 caagccggcc tccttgcggc agtgctcggt gtggtgcccg ggataggact cgtgtgcgac
     2821 caggtgcggc agctgcgcca tccggtgccc gagatccgcg ttgatcgcca cccgggagcg
     2881 gaagtcaccg aggtagtagt tgaacccgct ccacggcttg tcggtgacca cctcgtactg
     2941 cacggtctcc tgcgggtgga gcccgtagtc tgcgcgtacc cgatcccgta acgcgctgga
     3001 tagcgcgtgc accgccgctt ccagccgctc cggcgggatc tcgtcccggg cgcggtaggc
     3061 ggccagccga tcagccagtg ggtcggcgcc gggaagcaac cggccgatct cggcatgtgc
     3121 ctggcggtag gcatcagtat cccccggttc gatcacaaca tcgaagtacg ctgccacttc
     3181 cgccatgaag cccacctgct ggccggccag cacgcgcccg ctgcactcca aggcggccaa
     3241 gtggctgtcc aggaaacggg ctcgcggctc ggataaacca gccgccggca actcggcccg
     3301 cagctcgcca gcccggcgag ccagtatcgc cgggtccggc cttggttcgt tgtccaccgc
     3361 gcggcgcagc gccggatcac cggtgtagga atcaacaaag ccctcgataa ggcggtcaaa
     3421 cctcaggccc agcagcaggt actcgcgaac cacatccatg gatggggagt atccccccgt
     3481 gagtggcgat gcgggctctg acccgcatcg ccactcacgg ggctcacgag ccgaaccggc
     3541 ggtggcgggc ggtgtagtcg cgcagcgcgc gcaggaagtc cactttgcgg aaggccggcc
     3601 agtaggcatc gcagaaccag aactcggagt gcgccgactg ccaaagcagg aaacccgaca
     3661 accgctgctc ccccgaggtg cggatgacca ggtcgggatc aggctggccg gaggtataca
     3721 ggtgctcggc gatctgttcg acgtcgagca cctcggcgag ctcctccatg gtggttcccg
     3781 cctcggcgtg cttgagcagc agtttgcgca acgcgtcagc gatctcctgc cgcccaccgt
     3841 agcccaccgc gatgttgacc gtcagccccg gccgatcccg cgtccgggcc gcggcgctgg
     3901 tcagccgctg tgccatatcc gatggcaaca gatcgagcgc gccgacgact cgcactcgcc
     3961 atggcgtatc gggcgcgcac agctcgtcga ccacgtcggc gatgatctcc agtaacggct
     4021 gcagctggtc cggcggtcgg ttgcgcaggt tatccgggga cagcagccag aacgtggcga
     4081 tctcgacatc ggtctcgcgg caccagccga gcaactcgac caacttggca gcaccaaccc
     4141 ggtggccgtc gctgacgtcg gcaaacccaa cctccttcgc ccaacgccgg ttgccgtcca
     4201 tgatcaccgc aacgtgccgg gggcggttgg cggaaccgag ctggcgggcc agccggcgct
     4261 cgtaaagcgc gtagacgagg tcctgcagcc tcacaagtcg ggaaggctac gcccggtgcc
     4321 gcaggagaaa gcctacggtc tgggacagcg cgtcacgctg gctttccgac gatcgcgatg
     4381 gcgaaaccgt cgtagccctt cataccgacg gtctggatga cggtcgcgct gaccaacggt
     4441 tcagcggaga tcgactcgat gagccgccgt gtacccagca cagcggtgtt ctcgctgcgc
     4501 gcgtcaacca cttcgccacc ccgcaccacg ttatccacga tgatcacgcc gcccggccgg
     4561 gtcaggcgca ccgaggcggc gaagtactcg gcgttgtgct ccttgtccgc gtcgatgaag
     4621 acgagatcga acggctcggc atgcccggtc tcgagttcct cagccagccg cggcagcgcg
     4681 tccagcgccg cgccgacccg cacatccacg aggtctgcga ggcctgccct ggcgatgttg
     4741 gcgcgcgcca cgtcggcgtg tttctgctgg tgttccaagg tgaccaagtg gccgtccggt
     4801 ggcagcgccc tggccagcca aatcgtgctg tatccaccaa gcgcgccgaa ctcgagaatc
     4861 ctgcgggcat tcgtcagcgt ggcgaggagg ttgagcaact ttccctgtgc gggtgagacg
     4921 gcaatggctg gcagccctcc cgcatcgctg gccgcgagcg cagccgccaa ctcctcatcc
     4981 gttccgacga gtgtgtcggt gatgtagttg tcgaccgccg tccactgctg ctggctcatc
     5041 gcttcctcac tgtcgtctgg gctacctggt aaccatgctg ccgttatccg gcgcccctcg
     5101 gccacgtctg cggatcgtta cagctcgggg cctcgggcgc gcaggtcgtc gacagtggcc
     5161 atagcctgct ggagctcccc gagccattgc tgggcgtgct cacctaccag ccgtacggcc
     5221 caggccaggg cttccgaccg ggaacgtgcc accccagcat cgacgagggt gtcgagcacc
     5281 aggcgctcgg gttgccgcaa ccgggtcatc accggcaccg acagcgtggt gaacatctcc
     5341 tgggtgccac ccagccgggc gccccaggcg accttgcgcc cgtagcggtg ctcggcctgg
     5401 cgggcgatct cgatccgctc gtcgcgggag tcctcccgga acctgctgat ccgacccgcc
     5461 tcagccgccg cgcgctcggc gtcgtcggcg aactcttcgc gcaacgcggg cagctcaccc
     5521 atcacgtgga tttcctcgcg atccacggtc acctcgacgt caccggtgaa ccagccgtcc
     5581 ggcaatcgcc cggcgaacca ggccttggcg tcgtcagctg gtgggaggtc agcttgctgc
     5641 caaccaccac gcccgtgcca ccggccaccc gctcgcccgc cgtgcggtcg tccccgtccc
     5701 accatgtcgt caccccttca ccgtttccgt gcgttgcatt aattacaaca ttaccaaata
     5761 tcgggctagc ggcaggcctt cagttggact gctaccccag cgccatgggc ggttgcatag
     5821 gccatacccc tggggtcagc caccggggcc tgtggcgcgt gcgcaaccgc ccagcgccag
     5881 atccgtccag gggtacgctc aggtggcgag cgtgctcatc ggtagcggtc gacgatccgg
     5941 atcgctgcgc atcctggcta agccgtcgcc gcagatagtc atcgcggctg gcgtaattgg
     6001 gtgcgcagct cctcagcgga ggtcactggc cggtcacaga cgaatccgtg gcagacatag
     6061 gcagccggga cgcccgcgat cagatcccgg ccggcgagca tcggatgctc cgcacccggt
     6121 tccccgccca gcacgacagc tccaccaggg gctgcccacc gggcttgggc ctccagcgct
     6181 gtccgcgcac gatcaccagc ggcgcccatc acagcgatct gtactggccc gtgcgccagc
     6241 gcctcggcag tggtcagcca gtggccagcg gcctgcggcg ccttggccgg taccagcccc
     6301 gctcgcgcca ccgatgcctc agccgccact cgatagggtt ccgacccggt cagcgccgcg
     6361 gccgtgacca gcgcggcggc gagagcagat gcacctgctg gtgtggcgtt gtcagtcatg
     6421 ttggtgggac ggcggaacag cacctcggca tcagcagcgg tatcgaacca ggccccgggg
     6481 tgatcaggat cagcgaaatg tttctgcgcc agttccagca cgggcaatgc ctcattcagc
     6541 cagcggtcct caccggtgac ctggtgcagc gccagcaaac cttcgacgag ccaggcgtgg
     6601 tcggccaaca ccccggcagc ggtccctgcc acgccgtccc gggaactgcg ccgcagccgg
     6661 ccatcgacca catgggtgcc cagcatcagc tccgccgcgg cgacagccgc ggcaatccac
     6721 tccggacggc ccagcacacc ccccgcctcg gccagggtgg tgatcgccat cccgttccac
     6781 tcggtgacga ccttgtcgtc ccgaccgggc tgcgggcgat cggcccgggt cgcgagcagc
     6841 gcggtacgca cccgttccca gcgatcggcg tcatcaggct cggcaggcag ttgcaacacc
//
LOCUS       DASVXZ010000369         3406 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1005749, whole genome shotgun sequence.
ACCESSION   DASVXZ010000369 DASVXZ010000000
VERSION     DASVXZ010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3406
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005749"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VF788_07650"
     CDS             <1..222
                     /locus_tag="VF788_07650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934053.1"
                     /translation="SLVTNGTNRAAASRRVISATCAIHPGTPGFCNLEVRRDGDDLLL
                     NPHVTGACQILLTKAQAAALHAAIGEMLG"
     gene            541..942
                     /locus_tag="VF788_07655"
     CDS             541..942
                     /locus_tag="VF788_07655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934054.1"
                     /translation="MGSGLPCDRDASWLVRVAVLLGSGLAVTAGPADVELVASAEPKE
                     MTTDDVLQAREIIWICLDRQVESVRCAGQFGASVRKLDPAALVAVGPVASTMATEMRD
                     ELLAIARRSIRDYQSFASTGHRPRLLVSLPL"
     gene            complement(1164..1937)
                     /locus_tag="VF788_07660"
     CDS             complement(1164..1937)
                     /locus_tag="VF788_07660"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934055.1"
                     /translation="MPGAALYDAVGGGYAVTRGTDPKIAQVIWAGLGDARSVLNVGAG
                     TGAYEPPDREVLAVEPSSVMITQRPADAARVVRAVAEALPFADDRVDAVMAILTDHLW
                     VDRRQGLRELRRVARRRVVLFNADPTAAGRFWLTRDYLPGVMSLIPRRFHQPGVWVED
                     YLSRELGPVRLVPVPIPHDCRDGFYGAFWRRPAAYLRPEVRAGISLFMRLPPRDVTRA
                     LERLRTDLASGVWQARYAELMQQQELDLGYYLVVAELSN"
     gene            2204..2332
                     /locus_tag="VF788_07665"
                     /pseudo
     CDS             2204..2332
                     /locus_tag="VF788_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230947.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alkylhydroperoxidase"
     gene            complement(2329..>3406)
                     /locus_tag="VF788_07670"
     CDS             complement(2329..>3406)
                     /locus_tag="VF788_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005437645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0070726 - cell wall assembly [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEX8934056.1"
                     /translation="EPTLRYQEPSWRPTQRLPVTRLPAAPPPAGRRAPALRPRRRRRR
                     PGRVVMAILSVLVLMVLGFAVYIDRSLQRTGALADYPGRIAATAGTNWLIVGSDSRAG
                     LTADQEARLTTGDEAAAGGSRTDTIMLMHIPALIGGGQPTLVSLPRDSSVPLAGHGRV
                     KLNSTFALGGPTLLVQTVEKVTGVHIDHYAEIGFAGFANLVDDVGGVQMCPTDPIDDP
                     LAGLNIPAGCQMLDGPQALGYVRTRHSPRGDLDRVVRQREFLGALIARAGSPGVLLNP
                     FRAVPLAADAPDTVTVDDGDHVWSLARLGWAMRSLSHGDAVTTTVPFSGFGPVSDGSS
                     GVLWDRAKAAQLFNALAQDRPVPR"
BASE COUNT          619 a         1112 c         1118 g          557 t
ORIGIN      
        1 agcctggtga ccaacggcac caaccgggcg gccgcgagcc gccgagttat cagcgccacg
       61 tgcgccatcc accccggcac gccaggcttc tgcaacttag aagtccgcag agacggcgat
      121 gacctgctgc tgaacccgca cgtcacgggc gcatgccaga tcttgctgac caaggcgcag
      181 gcggccgcgc tgcacgctgc gattggggag atgctcggct gatggccatc aagtgggggt
      241 tgagcgtgct tgaccggcgt cggcacgccg tggacgagca tgcctcccat ccgatcgggt
      301 cctcaaagcg cagtgcggcc acttgctgtt gatggtgact gagctggacc ctgagccgct
      361 cggtagccgg tgtaagtcgt atgccgcaat gcagccagcg ggggctcggc gagtgacctc
      421 ggcgtcggtg agcagatgat gttgctgcgg cgtcgggtcc acaaggggct atcacccgct
      481 tcccacgggt tctacttcga cgccggtcag cggatctagt ggacatcggc cgctgccgcg
      541 ttgggctctg gcctgccctg cgaccgggat gcgtcctggt tagtccgcgt cgctgtgttg
      601 ctcggttccg ggctggccgt cactgcggga ccagcggacg tggagctggt cgcgagtgcc
      661 gaaccgaagg agatgacgac cgacgacgtc ctccaggcgc gcgagatcat ctggatttgc
      721 ctggatcgcc aggtggagtc cgtcaggtgc gcaggacagt tcggcgcgtc cgttcgcaaa
      781 ctcgatccag ccgcgttggt cgctgtcgga ccagtggcca gcactatggc gactgagatg
      841 cgcgacgagc tgcttgccat agcgcgccgg tcgatccgtg actaccagag cttcgcttcg
      901 accgggcatc gaccgcgcct cctcgtctcg ttgccccttt gatagggaca cacttaatgc
      961 tgccgctgtc atcggctctc gatcacgttg atgtgctcct tcgcaagaca cattctccct
     1021 gaccagggca tttgatgtta atggcgtgcg ccgacactcg tcgcatgcaa gaggaggtgt
     1081 gggtgatggt ggtggcacgg cgctggtcgt gggtgctggt gctggtggtc ggtctggcgt
     1141 tgttcgaagc ggcggcgatc cactcagttg ctgagctcgg cgacgactag gtagtacccg
     1201 aggtcgagct cttgttgttg catcagttct gcgtaccgag cctgccagac accagaagcg
     1261 aggtccgtac gcagcctttc cagtgcccgg gtgacgtcgc gaggaggcaa ccgcatgaac
     1321 agcgaaatac ccgcccgtac ttccgggcgc aggtaggcag caggccgccg ccaaaacgca
     1381 ccataaaaac cgtcgcggca gtcatgcgga atcggcaccg gcaccaggcg caccggaccg
     1441 agctcgcggc tcaagtagtc ctcgacccag acaccgggct gatgaaaccg ccgcggaatc
     1501 aagctcatca ccccgggcag atagtcccga gtcaaccaaa accgcccagc ggcagtggga
     1561 tcggcattga acagcacaac gcgacgccgc gcaacacggc gaagctcacg cagaccctga
     1621 cgacggtcaa cccaaagatg atcagtaagg atagccatca ccgcatcgac ccggtcatcg
     1681 gcgaagggca gcgcctcggc caccgcgcgc actaccctcg ctgcgtccgc cggccgctgg
     1741 gtgatcatca ccgacgacgg ctccaccgcg agcacctcgc gatcaggcgg ctcgtatgcc
     1801 cccgtcccgg ctcccacatt gagcaccgag cgggcatcac ccaacccggc ccaaatcacc
     1861 tgggcgatct tcggatccgt tccacgcgtg acggcgtagc caccaccaac agcgtcatac
     1921 agtgcggcac caggcacgca taccagtcaa gcgcaggcgg accgacgtcc acactgcact
     1981 cggcggttga cgcttcacct ggcgccccac ctcaacactt gccaggacaa agcgctctga
     2041 tgccgcgaag gaagtgaaga acgctgctgg ccgacatgcc gcgggctgag gtctggattc
     2101 cggacgaggt tctcccgcag gtcctcttca gcgcggtaga aggattcgag cgcggtgtgg
     2161 agctcagggc ggtcggactt gccagtagga cgactggcgt aacgtctcat cagacgagat
     2221 ttgggatgtc ggggcgatca ccgcgctgtt cgcgatgtcc aaccggctcg cacacctgat
     2281 ggctctgcga cccaacgacg agttcttcac gatgggccgc gtggcgcgct agcggggcac
     2341 cggccggtcc tgagccagcg cgttgaacag ctgagcggcc ttcgcgcggt cccacagcac
     2401 gccggaagag ccgtcgctga ccgggccgaa accagagaag ggaaccgtcg tggtcaccgc
     2461 gtcgccatgg gacagcgagc gcatcgccca gccgagcctg gccaggctcc agacgtgatc
     2521 accgtcatcg accgtgaccg tgtccggcgc atcggcggcc agtggcacag cgcgaaatgg
     2581 attgagcagc acgcccgggc tgccggcccg ggcgatcaag gcgccgagga actctcgctg
     2641 gcgcaccacc cggtccagat ccccccgtgg cgagtgccgg gtccggacat agcccagcgc
     2701 ctggggcccg tccagcatct ggcagccggc cgggatgttc aggccggcaa gcggatcgtc
     2761 gatcggatcg gtaggacaca tctgcactcc gccgacgtcg tcaacgaggt tggcgaagcc
     2821 ggcgaaaccg atctcggcgt aatgatctat gtgtactccg gtgactttct ccacggtttg
     2881 tactagcagg gtgggaccac ccaatgcgaa tgtggagttg agcttgacgc ggccgtgacc
     2941 ggcaagcggg acggaggagt cccggggcag actcaccaac gtcggctgcc cgccaccgat
     3001 caatgccgga atgtgcataa gcatgatcgt gtccgtgcgg ctgccacccg ctgccgcttc
     3061 atcgccggta gtcagccgag cttcctggtc ggcagtgaga ccggcccgac tgtccgaccc
     3121 gacgatcagc cagttagtgc ctgcagtcgc tgcgatccgt cccggatagt cggccagagc
     3181 gccggtgcgc tgcaacgacc gatcgatgta gaccgcgaac ccgagcacca tcagcaccaa
     3241 cacgctgagg atcgccatga ccacgcgacc ggggcgacgt cggcgtcggc ggggccgaag
     3301 ggcgggtgcc cggcgacccg ctggtggcgg tgctgcagga agcctggtga cgggcaggcg
     3361 ttgggtcgga cgccaggatg gctcctgata tctcagcgtg ggctcc
//
LOCUS       DASVXZ010000370         4238 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1205480, whole genome shotgun sequence.
ACCESSION   DASVXZ010000370 DASVXZ010000000
VERSION     DASVXZ010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4238
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1205480"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..464
                     /locus_tag="VF788_07675"
     CDS             <1..464
                     /locus_tag="VF788_07675"
                     /inference="COORDINATES: protein motif:HMM:NF039601.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5940 domain-containing protein"
                     /protein_id="HEX8934057.1"
                     /translation="LRLDAVGRHRVSSGGSGAQILHDLAVRPLETIGARMLDVDDYAT
                     ELHNPEITEPQGSGDVAARNYRTIAALAVRRKEIGREEIDPFVTARGMPGYAPTQGHL
                     ASAVCYLPHALNRLVTGTADRVLLLAKGSLFLGRMSQRSDGMSILLERNGG"
     gene            470..811
                     /locus_tag="VF788_07680"
     CDS             470..811
                     /locus_tag="VF788_07680"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX8934058.1"
                     /translation="MGQLVDATKENFDELVGSGLVLVDVWAQSCHPCVALAPHMASIA
                     SANPELTVVKLDASKARRLCMSLQVRGLPTILLFSEGQEVARISEPSLVADQVDAWLA
                     TALTRLATKEA"
     gene            813..1274
                     /gene="grdA"
                     /locus_tag="VF788_07685"
     CDS             813..1274
                     /gene="grdA"
                     /locus_tag="VF788_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_085916664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:936..938,aa:Sec)
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase complex
                     selenoprotein A"
                     /protein_id="HEX8934059.1"
                     /translation="MFDGKQVIVIGERDGVAGPAIAACVQAAGAAIAFAATECFVUTA
                     AGAMDLSTQETIKRLVDEHGADALLVLLGAPDAESAGIAAETVVLGDPSWAGPLAGVQ
                     LGLPVYHILEDEARSAVPAEVWEEQVGLMVDVLEVDAIAEAVREFREQAPS"
     gene            1563..2570
                     /locus_tag="VF788_07690"
     CDS             1563..2570
                     /locus_tag="VF788_07690"
                     /inference="COORDINATES: protein motif:HMM:NF014869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HEX8934060.1"
                     /translation="MPPNLLDRLARSDDEALRDAALNGLALDGRFRLARAESARSLIR
                     APKSVTFARIGGQPQRTIYDQQGSEAQTPGVPIRMEGQPSVKDKAVNQAYDGLGATYA
                     FYWSVFERDSIDGAGMPLLGLVHYGRRYPNAFWDGAGHMFFGDGDGQILTQTTAGIDV
                     IGHELTHGVTQNEANLTYSGQSGALNESVSDVFGIQVKQQALGQDVHTSDWLIGADIV
                     GPALRPALRSMKQPGTANAHDDQPADMNGYVPGGDVHTNSGIPNRAFYVVATTLGGHA
                     WDAAGPIWYAALRDPQLRPNATFRDFARITVKQAGQIYGADSDQAHAVRQGWEAVKVS
                     L"
     gene            2640..2939
                     /locus_tag="VF788_07695"
     CDS             2640..2939
                     /locus_tag="VF788_07695"
                     /inference="COORDINATES: protein motif:HMM:NF042532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protealysin inhibitor emfourin"
                     /protein_id="HEX8934061.1"
                     /translation="MRVDVTRRGGFAGVALHAALDTAQLPAADASRAEAALRDLPWDR
                     PPAEPTGADRFRYELATAEGGHERHVQLSEDEISDALRPLLDLLSDQGQLRAASG"
     gene            3151..3843
                     /locus_tag="VF788_07700"
     CDS             3151..3843
                     /locus_tag="VF788_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003081912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934062.1"
                     /translation="MIQIEDVTKVYRMGKVEVRALSGVDLTIDDGELVAIMGPSGSGK
                     TTLMNILGCLDVPTGGRYLLDGTDVSRLSDNRLAKIRSRKIGFVFQSFNLVSRTSAIR
                     NVELPLVYAGVRARRHPARVALEQVGLGDRQKHMPNELSGGQQQRVAIARALINDPAL
                     LLADEPTGNLDTAASAEILKLLGALNDAGRTVVIITHEEEVSRFAKRIVRMRDGRIVS
                     DQVQRSRTEVTA"
     gene            3840..>4238
                     /locus_tag="VF788_07705"
     CDS             3840..>4238
                     /locus_tag="VF788_07705"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934063.1"
                     /translation="MNLKEAIRIALRGLRANRLRSGLTMLGIIIGVASVILLVALGNG
                     VQTSVNEKIQPLANLITVVPSVGNVPGGAAPKDLIDADVAALQDKALSRDIASVTPAT
                     SGKALVEGDSYRYRANVVGSTDQWLQVNNQD"
BASE COUNT          751 a         1325 c         1419 g          743 t
ORIGIN      
        1 ggctaaggct cgacgccgtc gggcgtcatc gggtgtcctc aggcggctcc ggcgcgcaga
       61 tcctgcacga cctggcggtg cggccgctgg agacgatcgg cgcccggatg ctggatgtcg
      121 acgactacgc caccgagctg cacaatcccg agatcaccga gccgcagggc tcgggagacg
      181 tcgcggcccg caactaccgc accatcgcag cgctggccgt ccgccgcaag gagatcgggc
      241 gcgaggagat cgacccgttc gtcaccgcgc gtggcatgcc gggttacgcc ccgacccagg
      301 gccatctcgc atccgcggtg tgctacctgc cgcatgcgct caaccggttg gtgacgggaa
      361 ccgcggaccg ggtgttgctg ctcgccaagg gcagcctgtt cctcgggcgg atgagccagc
      421 gctccgacgg aatgagcatc ctgctggaac gcaacggagg ctgaaatata tgggccagct
      481 agttgatgcc accaaggaga acttcgacga gctcgtcgga tcgggcctgg tactggtcga
      541 cgtgtgggcg cagagctgcc acccgtgtgt ggcgctggca ccgcacatgg ccagtatcgc
      601 gagtgccaac ccggaactga ccgtggtcaa gttggacgcc agcaaggcgc ggcggctgtg
      661 catgtcgcta caggtgcgcg gtctgccaac catcctgttg ttctccgagg gccaggaggt
      721 ggcccggatc tctgagccga gtctcgtggc agatcaagtc gatgcctggc tggctaccgc
      781 gttaacccgg ttagcaacga aggaggcgtg aaatgttcga cggtaagcag gtcatcgtga
      841 tcggcgaacg tgacggggtc gcagggcccg cgatcgcggc ctgtgtccag gcagccggtg
      901 ccgcgatcgc gttcgcggcc actgaatgct tcgtttgaac ggctgccgga gccatggacc
      961 tgtccaccca ggagacgatc aagcgcctgg tcgacgagca cggtgcggac gcactgctcg
     1021 tcctgctcgg cgcgccggac gcggagagcg ccgggatcgc cgccgagacg gtggtgctcg
     1081 gtgatccgag ctgggcagga ccattggcgg gggtccagtt gggcctcccc gtgtaccaca
     1141 tcctcgaaga tgaggcgcgt agcgccgttc ccgccgaggt gtgggaggaa caagtcggat
     1201 tgatggtcga cgtcctggag gtggatgcca tcgctgaggc cgtacgcgag ttccgtgagc
     1261 aagcccccag ctagccgcac ttgcgacgac cacaagcatc catgtcgctc cctggcgtgg
     1321 tgcagccaca gcgataagcg tccatatgac tgtttggggc gaggtcgggt acggctaggc
     1381 tgtccggatc ttggctgggg gccgatctcg gctggaaacc catcttggcg gggcttccgg
     1441 cggtgcgtcg gtatctatcg cccgtgcccg atgctctctt atcggcacga tgcccgcccc
     1501 agcttccttg gacgaagagg agatcttcag tcatgactgc tcattgtgct cagcactgca
     1561 ttttgccgcc caatctgttg gaccgcttgg cccgctctga tgacgaagcg ctgcgggatg
     1621 ccgcgctgaa tgggctggct ctcgatggcc gcttccggtt ggcccgagcc gagtccgcga
     1681 ggagcctgat tcgggcaccc aagtcggtca ccttcgcccg gatcggcggc cagccccagc
     1741 ggaccatcta cgatcagcag ggaagcgagg cccagacccc cggcgttccc atccggatgg
     1801 agggacaacc gtcggtcaag gacaaggcgg tcaatcaagc ttatgacggc ctcggtgcca
     1861 cgtacgcgtt ctattggtcg gtgttcgagc gagactccat cgacggcgcc gggatgcctc
     1921 tgctcggcct ggtgcactac gggcggaggt atcccaacgc attctgggac ggcgccggcc
     1981 acatgttctt cggcgacggc gacggtcaga tcctcaccca gaccacggca gggatcgacg
     2041 tcatcggtca tgagctcacc cacggagtca cccagaacga ggcgaacctg acgtattcag
     2101 ggcagtccgg cgcgttgaac gagtcggtat ccgacgtgtt cggaattcag gtcaagcagc
     2161 aggccctcgg ccaggatgtg cacacctccg actggctcat cggggcggac atcgtcggtc
     2221 cggccttacg cccagcgttg cggtcgatga agcaacccgg caccgccaat gcccacgatg
     2281 atcaacccgc ggacatgaac ggctatgtac cgggcggaga cgtgcacacc aactcgggca
     2341 tccccaaccg cgccttctac gtcgtggcca ccacccttgg cgggcatgcc tgggacgccg
     2401 ccggaccgat ctggtacgcc gcgctaagag acccgcagtt gcggcccaac gccacgttcc
     2461 gtgacttcgc gcggatcacc gtgaagcagg ccgggcagat ctacggcgca gacagcgacc
     2521 aagcacacgc tgtgcggcaa ggatgggaag ccgtcaaggt ctccttgtga gcagtaacgg
     2581 gtaaacccca tcggtgtgac cggtttcgct gctgccggtg gagctggaca ctggtttcta
     2641 tgcgcgtaga cgtgactcgt cggggcggct tcgccggggt tgccttgcac gccgccctcg
     2701 atactgccca actccctgcc gccgatgcct cccgggccga ggcggcgctg cgagatctgc
     2761 cttgggatcg gcctccggct gaacctactg gggcggatcg cttccgctat gagctggcca
     2821 ctgccgaagg cggccacgag cggcacgtac agctttcgga agacgagatc tccgatgctc
     2881 tgcgcccgct gttggaccta ctgagcgatc agggacagct tcgcgcggct tcgggctgag
     2941 cggaaagtaa ccgaaacagt caaacgtgtg tgtttctgta ctttccgtga cgtccacgac
     3001 acggtagcgt ctggtgtaga tcgcgttcgg tgggtgacgt ccacatccac ctcgaggtcc
     3061 ggaccggaag gtcggcgagc actgctcgcc tgctagccgc cggaacccga gcgcggtcga
     3121 tatccggctg aggtatgggg ggccagcggc atgatccaga ttgaggacgt caccaaagtc
     3181 taccggatgg gcaaggtcga ggtgcgggca ctgtccggcg tcgacctgac catcgatgat
     3241 ggtgaactgg tcgccatcat gggcccatcc ggatccggca agaccacgct catgaacatt
     3301 ctgggctgtc ttgatgttcc gaccggtggc cggtacctgc tcgacggtac cgacgtcagc
     3361 cggctgtcgg acaaccggct ggcgaagatc cgcagccgca agatcggatt cgtgttccag
     3421 tcgttcaacc tggtatctcg cacgagcgcg attcgtaacg tcgagcttcc tttggtctac
     3481 gcgggggtgc gggctcggcg gcaccccgcg cgcgtggcgc tggagcaagt ggggctgggc
     3541 gatcgccaaa aacacatgcc caatgagctg tccggtggtc agcagcagcg ggtcgcgatc
     3601 gcgagggcgc tgatcaatga tcccgcactg ctgctcgccg atgagccgac cggcaacctc
     3661 gacaccgccg ccagcgcgga gatcttgaag ttactcggtg cgctcaacga tgccggtcgc
     3721 acggtggtga tcatcactca cgaggaagag gtctcccggt tcgcgaagcg gatcgtgcgg
     3781 atgcgcgatg ggcgcatcgt gagtgatcag gtgcagcgta gccggacgga ggtcaccgcg
     3841 tgaacctgaa ggaggcaatt cgtatcgcgc tacgtggctt gcgcgccaac cggctgcggt
     3901 cggggctgac catgctcggc atcatcatcg gtgtcgcatc ggtgatcctg ctggtagccc
     3961 tgggcaacgg cgtacagacg tcagtcaacg agaagatcca gccgctggcc aacttgatca
     4021 ctgtggtgcc atcagtcggc aacgtccccg ggggcgccgc gccgaaagac ctgatcgacg
     4081 cggacgtcgc ggcgctgcaa gataaggcgc tttctcgcga catcgcgtcg gtgactcctg
     4141 ccaccagtgg caaagctctg gtagagggcg attcgtaccg ctaccgagcg aatgtggtgg
     4201 gcagcacgga tcagtggctc caggtcaaca accaagat
//
LOCUS       DASVXZ010000371         2594 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1742369, whole genome shotgun sequence.
ACCESSION   DASVXZ010000371 DASVXZ010000000
VERSION     DASVXZ010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1742369"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..475
                     /locus_tag="VF788_07710"
     CDS             137..475
                     /locus_tag="VF788_07710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934064.1"
                     /translation="MAIDDVRAVIAALAEPETLLVFGVLAVRTSRLGVSASERSRSTP
                     YVTPFGLMRETSLSREVVEAAAARLNRAGLLEVLVDDEGGYESWRISEAALAAATTAS
                     VGVFSPLRRA"
     gene            566..2092
                     /locus_tag="VF788_07715"
     CDS             566..2092
                     /locus_tag="VF788_07715"
                     /inference="COORDINATES: protein motif:HMM:NF033517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HEX8934065.1"
                     /translation="MAAPEDTPREELIRLLTERDARIAAQDGQITTLSTQVADLLEVN
                     EALAGKLARLEHWLSRNSSNSSMPPSRDDDPGKTPPVEKPKPCAGGGPKRKRGKQPGA
                     SGANLAWVTRPDGQVDRFPQGRCECGHDLTGATDLGVVDRYQQHEIPQISVRITQYDQ
                     HQVRCGCGRLHTAARPEGARPGIVGYGPNLAAFAVYLMVVHFVPAKRCVELLESLTGA
                     APSVGFVHGMLSRAAGLLAEVDKRIRALITLTHAVCCDETPLRVGAKTPRPGRKKADK
                     YLLVACTELYTHYLLGDRDLDTFKAFVLTELTESVVVHDRYHLYDSARLGELTHQLCC
                     QHLLRDLAGVAETYPGAHWPIQIADALRGLIHQANLARGAGRDTIAAAVRDELIKQFT
                     NGVLVGLSDTTSPGGRPGERKARLLLEVLRDRPTDVLRFAHDLRVPPTSNQAERDLRP
                     SKIQQKISGRLTSEQRTTDRYRIRGYLSTAAKHGRNMIDALRDAILGHPWMPPDPAPA
                     "
     gene            complement(2129..>2594)
                     /locus_tag="VF788_07720"
     CDS             complement(2129..>2594)
                     /locus_tag="VF788_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934066.1"
                     /translation="LAVVTDVAMRRLSFQSQLTEAVEGFSDWDLDAFLWGDWHGNEVG
                     GKRIERPPIAVLGRLRRRRFLSAEEFAYARGRTKRIVKVTLPSPSLFANFYDPQRSRS
                     TYPTLESFLADVAEILREEVDELVRLGCEYVNIQSQCWSVVLPVVAWRRTRR"
BASE COUNT          437 a          842 c          879 g          436 t
ORIGIN      
        1 cgaccgcgat tttgggtttt tatcgacata cacgatccgg cgtaaatatt cagccgttgg
       61 acgttggttg atgcgttgat ccgcggctgc ggcggggccg gtcggctggc gtcgggtcgc
      121 cgctatggtg atcgatatgg ccattgacga cgttcgtgct gtgatcgctg cgttggctga
      181 gccggagacg ttgctggtgt tcggggtgct cgcggtgagg acgtcgaggc ttggggtgag
      241 cgcgtcggag cggtcgcggt cgacgccgta tgtgacaccg tttggtctga tgagggagac
      301 gtcgctgtcg cgggaggtgg ttgaggcggc ggccgcgcgt ctgaaccggg ccggcctgct
      361 cgaagtcctg gtcgacgacg agggcgggta cgaaagctgg cggatcagcg aggccgctct
      421 ggctgccgcg acgactgcat cggtcggtgt cttctcgccg ttgcgtcgtg catgacccgg
      481 ggaacagagt agttgccggg acgaatgtga cgatctcagc gtgttgatca cggatgcggt
      541 ggcctggtcg tagtgtgatc ttcgggtggc cgcgccggag gacacgccgc gtgaggagct
      601 gatcaggctc ctcacggagc gggatgcgcg gatcgcggcc caggatgggc agatcacgac
      661 gctctccacg caggtcgcgg atttgttgga ggtcaacgag gcgttggcgg ggaagctggc
      721 cagactggag cactggctct cgcgtaactc gtcgaactcg tcgatgccgc catccaggga
      781 cgacgatccg ggtaagacgc cgccggtgga gaagccgaaa ccatgtgctg gcggtggccc
      841 gaagcgcaag cggggcaagc agcccggcgc atcgggtgcg aaccttgcct gggtgacgcg
      901 gcctgatggc caggtagacc ggtttccgca ggggcggtgc gagtgcggcc atgatctgac
      961 cggggcgacg gatctggggg tcgtggatcg ctatcagcag cacgagatcc cgcagatcag
     1021 cgtgcgtatc acgcagtacg accagcatca ggtgcggtgt ggctgcggcc ggctccacac
     1081 cgcggcccgc ccggagggcg cccgccctgg gatcgtgggg tatggcccga acctggcggc
     1141 cttcgcggtg tacctgatgg tcgtgcactt cgtgcccgcg aagcggtgtg tcgagttgtt
     1201 ggagtcgctg accggtgccg cgcccagcgt gggcttcgtg cacggcatgc tctcccgtgc
     1261 tgcgggcctg ttggccgagg tggacaagcg gatccgcgcc ctgatcaccc tgacgcatgc
     1321 ggtctgctgc gacgagaccc cgctgcgggt aggcgcgaaa acgcccaggc cggggcgcaa
     1381 gaaggccgac aagtacctgc tggtcgcctg cactgagctc tacacccact acctgctcgg
     1441 tgaccgtgac ctggacacct tcaaagcctt cgtgctcaca gagttgaccg agtcggtggt
     1501 ggtgcatgac cgttaccacc tctacgactc agcccggctc ggtgaactga cccatcagtt
     1561 gtgctgccag caccttcttc gtgatcttgc cggagtggcc gagacctatc ccggcgcgca
     1621 ctggcccatc cagatcgccg acgcgctgcg cggcctgatc caccaggcca accttgcccg
     1681 cggcgctggc cgtgacacca tcgcggccgc cgtccgcgat gagttgatca agcagttcac
     1741 caacggggta ctggtcgggc tgtcggacac caccagcccc ggtgggcgcc ccggcgaacg
     1801 caaggcccgc ctgctgctag aagtgctgcg cgaccgccca accgacgtcc tgcgcttcgc
     1861 ccacgacctg cgggtgccgc ccacctccaa tcaggccgaa cgtgacctgc gacccagcaa
     1921 gatccagcag aagatctccg gccgactcac cagcgagcaa cgcaccaccg accgctaccg
     1981 catccgcgga tacctctcca ccgccgcaaa gcacggccgc aacatgatcg acgccctacg
     2041 cgacgcgatc cttggccacc cctggatgcc acccgacccc gcccctgcct gacctatcaa
     2101 atcggataca gccccgccta ccgcgcagct accggcgggt ccttcgccac gccaccacgg
     2161 gcaaaaccac agaccaacat tgggactgaa tgtttacgta ctcgcagccc agccgcacga
     2221 gctcgtcgac ctcctcgcgc aggatctcgg caacgtcggc caggaagctc tctagggtcg
     2281 gataggtgct gcgtgagcgc tggggatcgt aaaagttggc gaacaggctc gggctcggca
     2341 acgtgacctt gacgatccgc ttcgtccgcc cgcgggcgta cgcgaactcc tcggcagaaa
     2401 ggaagcggcg acgccggagc cgaccgagga ccgcgatcgg cgggcgctcg atgcgcttgc
     2461 ccccgacctc gttcccgtgc cagtcacccc acaggaacgc gtcgagatcc cagtcactga
     2521 agccctcgac cgcttcggtg agctggctct ggaacgaaag acgacgcatc gcgacatcgg
     2581 tgaccacggc gagg
//
LOCUS       DASVXZ010000372         3958 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1454379, whole genome shotgun sequence.
ACCESSION   DASVXZ010000372 DASVXZ010000000
VERSION     DASVXZ010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1454379"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2471
                     /gene="aceE"
                     /locus_tag="VF788_07725"
     CDS             <1..2471
                     /gene="aceE"
                     /locus_tag="VF788_07725"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEX8934067.1"
                     /translation="NAAMMVHRAQRPGVGVGGHISTYASSAALYEVGFNHFFRGKDHP
                     GGGDQVFIQGHASPGIYARAFLEGRLSADQLDGFRQEFSHAGPGGGLPSYPHPRLMPD
                     FWEFPTVSMGLGPINAIFQARLNRYLQARGVKDTSDQHVWAFLGDGEMDEPESRGQIQ
                     VAAIEGLDNLTFVVNCNLQRLDGPVRGNGKIIQELESFFRGAGWNVIKVIWGREWDAL
                     LHADRQGALVNLMNITADGDYQTYKANDGGYVREHFFGRDPRTKELVKDLSDADIWHL
                     KRGGHDYRKVYAAYQAATQHHGQPTVILAKTIKGYGLGPHFEARNATHQMKKLALEDL
                     KLLRDAQRIPITDAQLEENPTLPPYYHPGPDAPEIGYMCERRRALGGFVPERRTKSTS
                     LVLPGDKVYEVLRRGSGKQEVATTMAFVRQLRELIKDPEIGPRFVPIIPDEARTFGMD
                     SMFPTQKIYNPHGQLYTSVDAELMLAYRESEQGQILHEGINEAGSAASFTAAGTSYAT
                     HNEPLIPVYVFYSMFGFQRTGDALWAAGDQMARGFLLGATAGRTTLVGEGLQHNDGHS
                     LLLAASNPAVVAYDPAWGYEIAHIVRDGLRRMYGDCDDSAARDPNVFYYLTIYNEPYR
                     QPAEPAELDVDALLRGLYRYAPAPGTTGPRVQLAASGVALPWALQAQDMLAQEWGVQA
                     DVWSATSWTELRREAVEVDRHNLLHPDAEPRVPHVTRVLHDAEGPLVAVSDWMRAVPD
                     LIRPWVPIDLVTLGTDGFGFSDTRPAARRHFLIDAESITVAALAALARRGEVDQSVVA
                     EATHHYRIDDPQSAGPQTSDPGVA"
     gene            complement(2495..3286)
                     /locus_tag="VF788_07730"
     CDS             complement(2495..3286)
                     /locus_tag="VF788_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX8934068.1"
                     /translation="MISSPPKLVRQVDVRRAQDRRHTALGWLNSRHSFSFGRHYDPAN
                     THFGLLLVSNDDVVQAGMGFETHPHRDMEIVTWVLDGSLVHEDSQGNTGVIYPGLAQR
                     MSAGSGIQHSEKNDSWQLDSEPHDQDVHFVQMWVPPDTRSIEPSYQQLDINDELGTVE
                     AGSGQLVVVASGMGTHRDRRAISIQQQGAALYAARLQPGASVELPAAAFVHVFIARGT
                     VDLEDTGMLDTGDAARMTAAGGQRITAGPTGAEILVWEMTARLAG"
     gene            3423..>3958
                     /locus_tag="VF788_07735"
     CDS             3423..>3958
                     /locus_tag="VF788_07735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HEX8934069.1"
                     /translation="MTVQTSTRPLSASTLRQLALASGGLATASVAEMELRYPWFRRLP
                     ADQRAGILLITQTSVANFVEWLKDPQHSSRLTFGAFRMAPRDLSRWVSLRQTVELVRV
                     ATLVFEQQLPEFAADDAERAVLTEASLRYSREVAFAAASTYAGAAEARGAWDARLEAL
                     VVDGIMRGDGEESLLSRAA"
BASE COUNT          659 a         1360 c         1254 g          685 t
ORIGIN      
        1 ggaacgcggc gatgatggtg catcgggccc agcgtcccgg ggtcggtgtc ggcggtcaca
       61 tctccaccta tgcctcctcg gccgcactct acgaggtggg cttcaaccac ttcttccggg
      121 gaaaggacca ccccggcggc ggggaccagg tgttcattca gggccacgcg tctcccggca
      181 tctacgcccg ggcgttcctg gaaggccggc tttcggctga ccagctagac ggattccgcc
      241 aggaattttc ccacgcgggc cctggtggcg gcctgccgtc atacccgcac cctcggttga
      301 tgccagactt ctgggagttc ccgaccgtct cgatggggct gggaccgatc aatgcgatct
      361 tccaggctcg gctcaaccgt tacctgcagg cccgcggtgt caaagacacc tccgaccagc
      421 atgtctgggc ctttctcggc gacggtgaga tggacgagcc ggagtcccgc gggcagatcc
      481 aggtcgcggc catcgaaggg ctggacaacc tcaccttcgt ggtgaactgc aacctgcaac
      541 gtctcgacgg cccggtccgg ggcaacggca agatcatcca ggagctggaa tcattcttcc
      601 gcggcgccgg ctggaatgtc atcaaagtga tctggggccg cgagtgggac gccttgctgc
      661 acgctgaccg ccaaggtgcg ctggtgaacc tgatgaatat cacggctgat ggtgattacc
      721 agacttacaa ggccaacgac ggcggctacg ttcgggaaca cttcttcggc cgcgatccgc
      781 ggactaagga actcgtcaaa gatctttccg acgccgatat ctggcacctc aagcgcggtg
      841 ggcacgacta ccgcaaggtc tacgccgcct accaggctgc cacccagcac catggccagc
      901 ccacggtgat cctggccaag accatcaagg gctacggtct tgggccgcac ttcgaggccc
      961 gcaatgccac tcaccagatg aagaaactcg ccttggagga cctcaagctg ctccgggacg
     1021 cccagcgcat cccgatcacc gacgcacagc tggaggagaa ccctacgctc ccgccgtact
     1081 accacccggg accggacgcg cccgagatcg ggtacatgtg cgagcgtcgc cgggcactcg
     1141 gcgggttcgt gcccgagcga cggacaaagt ccacgagcct ggtgctgccc ggcgacaagg
     1201 tctacgaagt cctgcgccgc gggtcgggca agcaggaggt cgccaccacg atggccttcg
     1261 tccggcaact ccgcgagctg atcaaggatc cggagattgg gccgcgattc gtcccgatca
     1321 ttccggatga ggcgcgcacc ttcggcatgg actcgatgtt tcccacgcag aagatctaca
     1381 acccgcacgg gcagctctac acctcggtcg acgccgagct gatgctggcc taccgggaaa
     1441 gtgagcaggg tcagattttg cacgagggca tcaatgaggc gggttcggcc gcgtcgttca
     1501 ccgcggcagg tacctcgtac gctacgcaca acgagccgct gatccctgtt tacgtcttct
     1561 attcgatgtt cggcttccag cgcaccggcg acgccctgtg ggccgcgggc gaccagatgg
     1621 ctcgcgggtt cctgctcggc gcgaccgccg gacgcaccac gctggtcggc gaggggttac
     1681 agcacaatga cgggcactcc ctgttgctcg ccgcgtccaa tcccgccgtg gtggcctacg
     1741 acccggcttg gggctatgag attgctcaca tcgtccgcga tgggctgcgc cggatgtacg
     1801 gcgactgtga cgattccgct gcgcgggacc cgaacgtctt ctactacctc accatctaca
     1861 acgagcccta ccggcaacca gcggagcccg ccgagctcga cgtggatgcc ctgctgcgcg
     1921 gcctctaccg gtatgcgcct gccccgggca ccaccggccc acgcgtgcag ctcgctgcct
     1981 caggggttgc gctgccgtgg gctctacagg cccaggacat gctggcccag gagtggggcg
     2041 tgcaagccga tgtgtggtcg gcaacatcgt ggacggagct gcgtcgcgaa gccgtcgagg
     2101 tcgatcgcca caacctgctg caccccgacg ccgagccgcg ggtaccgcac gtgacgcggg
     2161 tgttgcacga cgcggagggt ccgctggtcg cggtttcgga ctggatgcgc gcagtgcccg
     2221 acctcatccg gccgtgggta ccgatcgacc tggtaactct gggtaccgac ggcttcggct
     2281 tctccgacac ccgccccgcg gcgcggcggc acttcctcat cgacgccgag tcgatcacgg
     2341 tagccgcgct ggccgcgctg gcccgccgcg gcgaggtgga ccagtccgtc gtcgctgagg
     2401 cgacccacca ctaccgcata gacgaccccc agtccgccgg tccacaaacc tctgaccccg
     2461 gcgtggcctg acgacggtcg ctgagctgtg ggggctagcc agcgagacgg gcggtcatct
     2521 cccagacgag gatttctgcg ccggttggtc cagcggtgat ccgctggcca ccggcggcgg
     2581 tcatccgcgc ggcgtcgccg gtatcgagca tgccggtgtc ttccaggtcg accgtgccgc
     2641 gggcaatgaa aacgtgcacg aacgcggcgg ccggcagctc aacgctggcg ccgggttgca
     2701 accgtgccgc gtacagggcc gcgccttgct gctggatgga gatcgctctc cggtcgcggt
     2761 gcgtccccat cccggatgcc accaccacga gttgtcccga gcccgcctcg accgtgccca
     2821 gctcgtcatt gatgtccagt tgctggtagc tcggttcaat cgagcgggta tccggaggca
     2881 cccacatctg cacgaaatgc acatcctgat cgtgcggctc gctatccaac tgccacgaat
     2941 cgttcttttc ggaatgctgg atcccggagc ccgcgctcat ccgctgggcc agcccggggt
     3001 agatcactcc ggtgttgccc tgggaatcct cgtgcaccag ggaaccgtcc aggacccagg
     3061 tgacgatctc catatcgcgg tgcgggtggg tctcaaaccc catgccagcc tgcacgacgt
     3121 cgtcattgct taccagtagc aacccgaagt gggtgtttgc cggatcgtaa tggcgtccga
     3181 aggagaaact atgccgggag ttcagccagc caagcgcggt gtgcctacgg tcttgggccc
     3241 ggcgcacatc gacctgacgc acgagcttcg gtggcgaact gatcatacgt ctctcctcga
     3301 ccctgctaac ctggacttcg ctccggccaa accctatcgc gcgtagccat ttcccgttgc
     3361 cctcaagtta tcgccgtgtt cttctcccgt tatctccagc gtcgccgtgc catgctggcg
     3421 gcatgaccgt ccagacgagc acccgcccgc tctcggccag cacactgcgc cagctggcgc
     3481 tggcctccgg tgggctcgcc acggccagcg tggccgagat ggagctacgt tacccctggt
     3541 tccgccggct acccgccgac cagcgcgccg gaatcctgct gatcacgcag accagcgtgg
     3601 caaacttcgt cgaatggctc aaggatccgc agcattccag ccggctcacc ttcggagcgt
     3661 tccgaatggc cccccgtgac ctgagtcgct gggtcagcct gcgccagact gtcgagctgg
     3721 tccgggtcgc aaccctggtc ttcgagcagc agctacccga gttcgccgcc gacgatgccg
     3781 agcgcgccgt gctgaccgag gcgtcgctac gctacagccg cgaggtagcc ttcgccgccg
     3841 ccagtaccta cgccggtgcc gccgaggccc gtggcgcttg ggatgcccgg ctggaagcgc
     3901 tggtggtgga cggcatcatg cgtggggacg gcgaggaatc actgctgtca cgggcggc
//
LOCUS       DASVXZ010000373         5113 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1564315, whole genome shotgun sequence.
ACCESSION   DASVXZ010000373 DASVXZ010000000
VERSION     DASVXZ010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5113
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1564315"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..384)
                     /locus_tag="VF788_07740"
     CDS             complement(76..384)
                     /locus_tag="VF788_07740"
                     /inference="COORDINATES: protein motif:HMM:NF014505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEX8934070.1"
                     /translation="MSLRRGAVHPYKPVLQRPGQSLQRLIVSADPLNESPLPVVLGLQ
                     VVDRDPDSLLSVRLEGHGWAVITTIEQVIKSRLDEPSGVISPDEQQAVDNALRAALDI
                     "
     gene            complement(1101..1307)
                     /locus_tag="VF788_07745"
     CDS             complement(1101..1307)
                     /locus_tag="VF788_07745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934071.1"
                     /translation="MTYYGAFYKSALYCLLTRINAYLLRWVRNKYRRLRGRTKAQKAW
                     IGVTQRHPRFFAHWTWINMPPTAG"
     gene            complement(1314..1760)
                     /locus_tag="VF788_07750"
                     /pseudo
     CDS             complement(1314..1760)
                     /locus_tag="VF788_07750"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
     gene            complement(1814..2899)
                     /locus_tag="VF788_07755"
     CDS             complement(1814..2899)
                     /locus_tag="VF788_07755"
                     /inference="COORDINATES: protein motif:HMM:NF033564.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEX8934072.1"
                     /translation="MPGGLLAALGSVEDPRSRRGVRHRLFTVLAIGICAVLAGAQTFT
                     AIAEWAQDLTPAVCIRLGIGRRAPSESTIRRVLQAVDAEALDGAVSAWLVTRSAPLAA
                     ALRMITIDGKSVCGARRADGRAVHLLAAFDQVSGIVLHQSVVEGKTNEITAFAPLLNR
                     IDITGAIITADALHTQHRHADYLIGPGAHYVLTVKRNQPSLHRQLTALPWAQIPTVER
                     THDKGHGRIESRSLKLAAVPAGIGFPHAQLAIQLTRRRQSMTSGKRHTETVYAITDLT
                     WPQIRANHLADAIRGHRSIENRLHWIRDVVFTEDHSQIHTGTRPTVMATLRNLTDSLH
                     PLSGATNIAAACRHVNHHPNRVLPLLT"
     gene            complement(3046..3510)
                     /locus_tag="VF788_07760"
     CDS             complement(3046..3510)
                     /locus_tag="VF788_07760"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8934073.1"
                     /translation="MRTHGADSLYETHPGILDAATTFPSVGDRIAQTVVATELERKVE
                     PIFHPDSYGYRPNRSALDAVAFCCRRCWKTDWVIDLDIQKFFDSVAWELMIKAVEANT
                     DLLWVVLYVRRWLHAQLQLPEATLQQCDRGTPRAPAKSSAAACLRLDTPVVR"
     gene            complement(3564..3716)
                     /locus_tag="VF788_07765"
     CDS             complement(3564..3716)
                     /locus_tag="VF788_07765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934074.1"
                     /translation="MTSQPLGTPRRTVTTSTAVPGFIASPALAASLQAVLVDLIELHP
                     QAKQAR"
     gene            complement(3713..4351)
                     /locus_tag="VF788_07770"
     CDS             complement(3713..4351)
                     /locus_tag="VF788_07770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX8934075.1"
                     /translation="MTVTIAGIDIPDTELARETTELVRKASPPLLFDHSRRVFLFASL
                     KGRYRKIEADPELLYVGAMFHDLGLTEHYRRTDQRFEVDGADLARDFLLDHGRSAAEA
                     RAVWLGIALHTTPGIPNHLEPETALVSLGVETDVLGMDLDQITAEEVAAVVAAHPRPD
                     FKNNILRAFYDGMKDRPDTTFGTMNDDVLAHFAPGFTRADFVDIIISSAWPE"
     gene            4480..>5113
                     /locus_tag="VF788_07775"
     CDS             4480..>5113
                     /locus_tag="VF788_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX8934076.1"
                     /translation="MARTTVHRIGIVVYDGVKLLDVAGPSEVFSEANRMGAHYELTLC
                     AVGGRPVSSSTGMTIPADADATGPQLRFDTLLVTGGDVFPAHPVDPELREAVTSVAAR
                     SGRVCSICTGAFILAAAGLLDGRRATTHWRHTGVLSRGYPDIIVEPDAIFVRDGTTFT
                     SAGVTAGIDLALALLEDDHGEQLARQVAQSLVVFLQRPGGQSQFSPTLSGP"
BASE COUNT          845 a         1589 c         1756 g          923 t
ORIGIN      
        1 cctgatcgac ccgccgtcgc accgcgactg cccagccccg ccgggcccgg aaagcgcgct
       61 agtcaccgcg gtggttcaga tatcaagcgc ggcgcggaga gcgttgtcga cggcctgctg
      121 ttcgtctggg ctgatgacgc cagatggttc gtcgagacgg gatttgatca cttgttcgat
      181 ggttgtgatg accgcccagc cgtgaccttc aagtctcacg gacagcaggg agtcagggtc
      241 gcgatcgacg acctgcagcc cgagcaccac aggtaggggt gactcgttga gcgggtcagc
      301 ggagacgatc aagcgctgta gcgattggcc gggtcgttga aggactggtt tgtaggggtg
      361 gacggccccc cggcggaggg acactcagtc ggcctcgtca agtgcagcgg cagtttcagc
      421 cagcgagtct tcaacatagc tgggattggc cgcgtaccag cgcgccatac tgttggctgc
      481 ttcgcgcagg gcatcagctc gaacgaggcg ctcaaggtag cccgatgcgc ctccacgggt
      541 acgagcgccg cactggcgga ccctggcggc cacgggcggg tccagagaga tcgttaagcg
      601 ctcacgctgg tgcatacgcg ggagagtacc gtgatgcgta agggaatgcc ctgggagtcg
      661 cgtactcgcc cattgacgtg cacttccgtc gagcgcccgc ttctccgagg tctacgggcc
      721 cctcgccggc ggcgacacat cgcgcggctg gttcctcacc atcgtcagtt accaggcccg
      781 cgatcaccgt cgtgcacgtt cgcgctgtcg tgaaaagaat cactttctgg atctgccgag
      841 gagctaaatc tgacgtcgag gggactgtca cctgggaatt ccagatgctg cgcgctggcc
      901 gcgagttcct gaacacgttg cctgaaaaga gtgcgtggct tacctgcttg agcacttcaa
      961 agagctcgat cgaaaagagg tggtggaagt gctggaatgc tcgccgaaga ccgtgtcggg
     1021 tggccggagg gggttttacc ctccggcttc cgcagatccg ggcgtaacag tctcccgtta
     1081 cccggctctt gtgatcctgg tcatccggcg gtggggggca tgttgatcca ggtccagtgg
     1141 gcgaagaacc gaggatgcct ttgggtgacc ccgatccatg ccttttgggc ttttgtgcgt
     1201 cctcgtaacc gtcgatactt gttgcggacc caccgcaaca ggtaggcatt gatgcgtgtc
     1261 aggaggcagt acagcgccga tttgtagaag gcgccgtagt aggtcatccc gcctcacacg
     1321 aggggattga tgtctcgggc gaggtcggcg aaggatcgac cggtgcggtg atgcagccgc
     1381 caggaccgca cccgtgcact gattttcctc aaggcgtcct tgctgatcgc gggcaggaac
     1441 gagaggaaca ttttcccgtt tttgttccgt gccccgcgcg cccggaacgt ggagcccagg
     1501 aacgtgaacg cggtgtgctc gtggcagccg cgccgcctgc cgtcgtggca gtagacgatc
     1561 ctggtcttct ccggacgcaa cctcagcccg acctggtcca ttcgctccgc gatcgccgtg
     1621 agcacgacgt gcgcctggcg tttgctgagg cagtgcacga ccgcatcatc gacgtagcgt
     1681 tcaaaccaga ccccgaggaa ctcccgggcc atccaggcat cgaacgcgta gtggaggaac
     1741 aggttggcca ccacaggcga gaccgcagaa ccctatgggg taccccaggg cctcggcaaa
     1801 gttggtctcc ttgttatgtg agtagtggca ggacgcggtt ggggtggtgg ttgacgtggc
     1861 ggcaggcggc ggcgatgttg gtggcgccgc tgagagggtg caggctgtcg gtgaggtttc
     1921 ggagggtggc catgacggtg ggtctggttc cggtgtggat ctgggagtgg tcttcggtga
     1981 agacgacgtc gcggatccag tgcaagcggt tctcgatgct ccggtgcccg cggatggcgt
     2041 cggcgaggtg attcgcgcgg atctggggcc aagtcaggtc ggtgattgcg tagacggtct
     2101 cggtgtgccg cttgccgctg gtcattgatt ggcgtcggcg agtgagctgg atagcgagtt
     2161 gagcgtgggg gaatccgata ccagcgggca ctgcggccag tttgaggctg cgggattcga
     2221 ttcggccgtg gcctttgtcg tgagtgcgct cgacggtggg gatctgggcc cagggcaggg
     2281 ccgtgagttg gcgatgcagg ctgggttggt tgcgcttgac cgtgagcaca taatgcgcac
     2341 ccgggccgat gaggtagtcg gcgtggcggt gttgagtgtg cagcgcatca gccgtgatga
     2401 tcgcgccggt gatatcgatg cggttcagca acggcgcgaa tgcggtgatc tcattcgtct
     2461 tgccctccac cacgctctga tgcaggacaa tgccgctgac ctggtcgaac gctgcgagta
     2521 ggtgcaccgc gcgaccatcg gcccggcgcg ccccacaaac gctcttgccg tcgatggtga
     2581 tcatcctcaa cgccgcggcc aagggggcgg atcgggtcac caaccaggcc gagacggccc
     2641 cgtccagagc ctccgcgtcg acggcctgca aaacacgacg gatcgttgac tcgctcggcg
     2701 ctctgcggcc aatcccaagc cggatacaca ccgcaggagt caggtcctgc gcccattccg
     2761 cgatcgcggt gaacgtttgc gccccggcga gcaccgcgca gatgccaatc gccaggacag
     2821 tgaacagcct gtgccgcacc ccgcggcgcg accggggatc ctcgaccgag cccaacgcgg
     2881 caagcagacc acccggcacc ggatcagaac cgacccacgc ctccccagac tgactcgcag
     2941 caacggagat cggcaaagat aggcaggcgg acacggcagc cgctccggtg atcgtgttgg
     3001 cgtaggaacc gtcatgatca ccagcggtgc cgtgtccgcg cggccttacc tcaccaccgg
     3061 cgtgtcaagc cgcagacacg ccgcagcgga cgactttgcc ggggccctgg gggtaccccg
     3121 gtcacactgc tgcaaggtcg cttcaggcag ttgcagttga gcgtgcagcc accgccgcac
     3181 atacagcacc acccatagca ggtcggtatt cgcttccacc gccttgatca tcagctccca
     3241 cgcgacgctg tcgaagaact tctggatgtc caaatcaatc acccagtcgg tcttccagca
     3301 cctcctgcag cagaaggcca ccgcgtccag cgcggaacgg ttcgggcgat agccatagga
     3361 gtccggatga aagatcggct cgaccttccg ctccagctct gtggccacta ccgtctgcgc
     3421 gatccgatcg cctacgctcg ggaaagtggt tgcagcatca aggatgcctg ggtgggtttc
     3481 gtaaagtgag tcggccccat gtgtcctcac ggatcttggc tcggttgcag gtgcaagtcg
     3541 cggaagtggt ggccgacgac gtttcagcgg gcctgcttgg cctgcgggtg cagctcgatc
     3601 aggtcaacga gcacggcctg caagctcgcc gcgagcgcgg gcgaggcgat gaagccggga
     3661 acggcggtgc tggtcgtgac ggttctcctc ggtgtgccca gtggctgaga ggtcactcgg
     3721 gccatgccga gctaatgatg atgtccacga agtccgcacg cgtgaagccg ggcgcgaagt
     3781 gggcgagcac gtcatcgttc atcgttccga aggtggtgtc ggggcggtcc ttcataccgt
     3841 cgtagaaagc ccgcaggatg ttgttcttga agtccggtcg cgggtgcgcc gccacgacgg
     3901 ccgcgacctc ctcggcagtg atctggtcga ggtccatccc tagcacgtcg gtctcgacgc
     3961 cgaggctgac gagcgccgtc tccggctcta ggtggttggg gatgcccggg gtggtgtgca
     4021 gcgcgatgcc cagccacacg gcgcgggcct cggcggcact gcggccatgg tcgagcagga
     4081 agtcccgcgc caggtcggcg ccgtcgacct cgaagcgctg gtcagtgcgc cggtagtgct
     4141 cggtcaggcc gaggtcgtgg aacatcgcgc cgacgtagag cagctcgggg tcggcctcga
     4201 tcttgcggta acggcccttc aggctcgcga agaggaacac ccggcgggag tggtcaaaca
     4261 acagtggggg gctggccttg cggaccagct cggtggtctc gcgggccagc tcagtgtccg
     4321 ggatgtcgat cccggcgatc gtcacggtca tgtcctgcgc ctttcacgta gagtttcgtt
     4381 ctacgtccag cgtgctcccg ccaccggcgt tgtgccccgc gtgggcggcc atacttcaca
     4441 cgattacgga cggaccgctc gcgcctcggg aggacggtcg tggctcgcac caccgtgcac
     4501 cgtatcggca tcgtggtcta cgacggcgtg aagctgctcg acgtcgccgg gcccagcgag
     4561 gtgttcagcg aggcgaaccg gatgggcgcc cactacgaac tgacgctgtg cgcggtgggc
     4621 ggccggccgg tgtcgtcctc caccggcatg acgatcccgg ccgacgccga cgccaccggc
     4681 ccgcagctgc ggttcgacac gctcctggtc accggcggtg acgtgttccc ggctcacccc
     4741 gtcgacccgg agctgcgcga ggccgtcacg agcgttgcgg cacggtcggg ccgggtctgc
     4801 tcgatctgca ccggggcctt catcctcgcc gcggccgggc tgctcgacgg ccgccgcgcc
     4861 accacgcact ggcgtcacac cggggtgctg agcaggggtt atccggacat catcgtggaa
     4921 cctgacgcga tcttcgtccg cgacggcacg acgttcacct cagcgggcgt gacggcgggt
     4981 atcgacctcg ccctcgcctt gctcgaggac gaccacggcg agcagctggc gcggcaggtc
     5041 gcgcagtcgc tggtggtgtt cctgcaacgc ccaggcggac agtcgcagtt ctcccccacg
     5101 ctgagcggcc ccc
//
LOCUS       DASVXZ010000374         5298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1742467, whole genome shotgun sequence.
ACCESSION   DASVXZ010000374 DASVXZ010000000
VERSION     DASVXZ010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5298
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1742467"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..769
                     /locus_tag="VF788_07780"
     CDS             <1..769
                     /locus_tag="VF788_07780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934077.1"
                     /translation="DHDNSLAAARGGVAALCLGGHDKDTTASYECNGILSLGVAEGLG
                     IAERDKEHGHTKADSANELLNLCIGKREKLTTPCEGLGLEAVHSDSKSKSDKPDTERH
                     SFLLGIDSNGHSSYLLDAPFALALPDHCGDSAILCLLLNQGRSVIFHNPKGAGSAQEA
                     LRLDVLNRTLLVVLGQAESLAHETEGRDHHKKEEEHGNKGEEQGKGENNGGEKGPELA
                     ETGADVAGLLAGGFLLTGLGALTVAASRRRVGRHHTL"
     gene            913..1449
                     /locus_tag="VF788_07785"
     CDS             913..1449
                     /locus_tag="VF788_07785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934078.1"
                     /translation="MRSRPIPSLIGAAALVLAITCGVIAWALSGTDSRVVDTHAVVNT
                     AGKYSFEAPTGWSSTQQGRTTTLTSPDQSTVITLGVGRIGPLPVAGTLFFQQVAGNYK
                     NVQVLPPEAKEVGSRPALIYGGVGNNAQNTSIRFLAITVQNNPTNYAIAVFTAAGSDP
                     NIVLPQVNRVVDTFRPVP"
     gene            complement(1469..3235)
                     /locus_tag="VF788_07790"
     CDS             complement(1469..3235)
                     /locus_tag="VF788_07790"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HEX8934079.1"
                     /translation="MCYRRALRACAVMVVCAVLGLLIGTRSASAHATLISTNPAQGAV
                     LATIPTAVSLAFSEPVVVAEDGLRVFGPDGAKVDNGRTAHLGRSSAVGVGLVGGGSQR
                     GTYTVSWRAISADSHPVAGAFTFSVGHPSLGRPPADAQRGGSAAVGVIYAITRAVAFA
                     SYALLVGSVAFVLLCWSGAIADRGVRRIMLVGWAALLATTVATLLLQGPYGNGLGLDR
                     ALDSMVVSETLASRLGTALTARLILLAFAGGYLVLLCAWFVQLARRGRIWFSVLGVAL
                     ALGLAATWAGADHAAVGVQPELALGVDVVHLVTMGVWLGGLTTLATLLRSPDTPHTGS
                     SAVPHPAVHRFSTVATGSIVVLIGTGSYQSWRQLGSWAAFGSTDYGRLLLVKLGAVAL
                     MLGVASLSHRWVTRHRRVLIGVGAARPAVNSPPGGTVPHHDVLERGELRRSVAAEAAL
                     GAFVLAVTALLVNAEPGRTVASTPHGPAHQVISYDTGGPGGRGQLIVDVDPATTGPNT
                     IRVTVEGPSGTRHDVAELRIELTLTKRQLGPFSIPLQHPEPGEYDASGVQLPYPGTWQ
                     LRMIVRTSEIDETGVTVPLDIR"
     gene            complement(3243..3938)
                     /locus_tag="VF788_07795"
     CDS             complement(3243..3938)
                     /locus_tag="VF788_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1775 domain-containing protein"
                     /protein_id="HEX8934080.1"
                     /translation="MAKVSQRWASRLAGLGAVCVLALLTLVGTASAHVTANAGTAQQG
                     GYTKVSFRVPNERDTASTTQLEINFPTDHPMASVSTRAVPGWTSTVQKTKLDKPIRTD
                     DGEVSEVVSKITWTGGKVAPGTFEEFDVSMGPLPTDTDELIFKALQTYDNGEVVRWID
                     TAPEGAPEPEHPAPVLKLTPANPGQAATVTTTGEAPSATGTWGVVLGIAGIVLGLVGI
                     ILSLLNRRSAAAG"
     gene            complement(3968..4585)
                     /locus_tag="VF788_07800"
     CDS             complement(3968..4585)
                     /locus_tag="VF788_07800"
                     /inference="COORDINATES: protein motif:HMM:NF028506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5134 domain-containing protein"
                     /protein_id="HEX8934081.1"
                     /translation="MAGAEWARWVFAGMFAALTVFYVVRLLTPRQDASAHSSGDRTVD
                     LSRGVMSLGMVAMLVPWLDPLPRLCWQVLFGLVAGHIAVRLIQRGARAARASRRGPRT
                     HHELHLVVGALAMVYMFAVMPVGQHMAHGMNMAGVGSTGLAVPALTWVLVAYFLVFVV
                     RLSARLTLPGNTLTPGDGVVVSPHLLGSSEVVMGIGMSYMLMTML"
     gene            4706..5227
                     /locus_tag="VF788_07805"
     CDS             4706..5227
                     /locus_tag="VF788_07805"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX8934082.1"
                     /translation="MKPIDAGELLLRPIHRPVARMLLAGGIPRGLSFAPGYPSPFTHE
                     VMEMVAEALQPGRFGPYFMVRKADDAIVGEIGCSVEDASATGKVGYTVVELCWGRGYA
                     TEALRALLGHVLAEPDMRRVVAETMVENIASRRVMEKAGMTFCGKRVDVDGSEPVDLV
                     VYEALAVSGVTTR"
BASE COUNT          967 a         1771 c         1730 g          830 t
ORIGIN      
        1 ggaccacgac aactcgcttg ccgcagcccg cggtggtgtc gcggcgttgt gcctgggcgg
       61 tcacgacaag gacaccaccg cctcctatga gtgcaacggc atcctgtcct tgggcgtcgc
      121 cgagggtctc ggtatcgcag agcgggacaa ggagcacggc cacaccaagg ccgattccgc
      181 caatgaattg ctgaacctct gcatcggtaa gcgcgagaag ctgaccactc cgtgcgaggg
      241 tctcggtctc gaagcggtgc actccgactc caagtcgaag tccgacaagc cggacaccga
      301 gcgtcactcg ttcctgctcg ggatcgacag caacggtcat tcctcctacc tgctggatgc
      361 gccgttcgcg ttggccctgc cggaccactg tggtgattcc gcgatcctgt gcctgctgct
      421 caaccagggc aggtcggtca tcttccacaa ccccaagggc gctggtagcg cgcaggaggc
      481 tctgcgcctc gatgtgctca accgcaccct gctggtggtc ctcggtcagg ccgagagcct
      541 ggcgcacgag actgaaggcc gtgaccacca caagaaggaa gaagagcacg gcaacaaggg
      601 tgaagagcag ggcaagggcg agaacaacgg tggcgagaag ggtccggagc tggctgagac
      661 cggtgccgat gtcgccggac tgctggccgg aggattcctg ctcaccgggt tgggcgcgct
      721 gaccgtggcc gccagccgcc gtcgggttgg taggcaccac actctgtagg agttcacagc
      781 agtacctgag tagatcgtct gtgggggtcg gtgatttagt cgccggcccc cacagccatg
      841 tccgcccacc acctcgctac gatcggcgcc ctcatgaata cttcgatctc taggctcccc
      901 tggatttcca ggatgcgcag ccgaccgatc ccgtcgctta tcggtgctgc cgctttggtg
      961 ctcgccatca cctgcggggt gatcgcttgg gcgttgagcg gcaccgatag ccgcgtagtc
     1021 gatacccatg cggtggtcaa cacagctggc aagtacagct tcgaggcccc caccggctgg
     1081 tcgagtaccc aacagggtcg caccacgacg ctcaccagcc cagatcagag caccgtgatc
     1141 actctcggag tgggtcgcat cggaccgttg ccggtggccg gcaccctgtt cttccagcag
     1201 gttgccggta attacaagaa cgtccaggtg ctcccgccgg aggccaagga ggtgggctcc
     1261 cggccggctc tgatctatgg cggagtcggc aacaatgccc agaacaccag catccgtttc
     1321 ctggcgatca ccgtccagaa caatcccacc aactacgcca tcgcggtgtt cacggcagcc
     1381 ggctcggacc ccaatatcgt ccttccgcag gtgaaccggg tagtcgacac cttccggcca
     1441 gtgccgtaac gccgatcatc gccctagctc accggatgtc gagggggacg gtcacccctg
     1501 tctcatcgat ctccgaagtg cgcacgatca ttctcagttg ccaggttccg gggtagggca
     1561 gctgaacccc gctggcgtcg tactcgccag gctcagggtg ctggagcggt atcgagaatg
     1621 gaccgagctg gcgtttagtg agcgtcagct cgatccgcag ctcggccacg tcatgccggg
     1681 tgccggaggg accctcgacg gtgacgcgga ttgtgttcgg gccggtggtg gccggatcga
     1741 cgtctacgat gagttgccct cggccgcccg gaccgccggt gtcgtagctg atcacctggt
     1801 gggccggacc gtgcggcgtg ctcgccacgg tgcgaccagg ttcggcgttg accagtagtg
     1861 cggtgaccgc gagcacgaat gcgccgagcg ccgcttccgc cgcaacgctg cgtcgcagct
     1921 caccgcgttc cagcacatca tggtggggca cagtgccacc tggcggcgaa ttgacggccg
     1981 gccttgctgc gccaacgccg atcagcactc gccgatgccg ggtgacccat ctgtgggata
     2041 acgaggcgac gccgagcatc agcgcgacgg ctccgagctt caccagcagc agccggccgt
     2101 agtcagtaga accgaacgcc gcccagctgc cgagttggcg ccatgactgg tagctcccgg
     2161 tgccgatgag gaccacgatc gaaccggttg cgacggtgga gaaccggtgt accgcgggat
     2221 ggggaaccgc tgacgagccg gtatggggag tgtcgggcga tcgcagcagg gtcgccagcg
     2281 tggtcagccc accgagccac acacccatcg tcaccagatg cacgacgtcg acgcctaatg
     2341 ccagttctgg ctggacgccc acggcggcat ggtcggcacc agcccaggtg gcggcgaggc
     2401 ccagcgccaa ggccacgccg agaacgctga accagattcg cccccgccgc gcgagctgca
     2461 cgaaccacgc gcacaacaag acgaggtaac cgcccgcaaa cgccagcaga atcagccggg
     2521 cggtcaaggc agttcccagc cggctggcca aggtctctga gacgaccatc gagtccagag
     2581 cccgatcgag ccccaggccg ttgccgtagg gcccttgcaa gagcagggtt gccaccgtgg
     2641 tcgccaacag cgcggcccag ccgaccagca tgatgcggcg gacgccccga tcggcgatag
     2701 caccggacca gcacagcaac acgaacgcaa ccgatcccac gagcaatgcg taagacgcga
     2761 aagcgacggc ccgggtgatg gcgtagatca cccccacggc tgcgctaccg ccgcgttgcg
     2821 catccgccgg cggccgaccc agcgaggggt gacccaccga gaaggtgaag gcgccggcca
     2881 ccgggtgtga atcggccgag atcgcccgcc acgagacggt gtaggtgccc cgctgcgacc
     2941 cgccgccgac caatccgaca cccacggccg aggaacggcc aaggtgcgca gtacggccgt
     3001 tgtcgacctt ggcgccatct ggtccgaaga cccgaagacc gtcctcggcc acgaccaccg
     3061 gttcgctgaa cgccagcgag acggcggtag ggatggtggc gagcacggcg ccctgcgccg
     3121 gattggtcga gatcagcgtc gcgtgggccg aggctgaacg ggtgccgatg agcagcccga
     3181 gcaccgcgca gaccaccatc actgcgcagg cccgcagcgc tcgccggtag cacactggca
     3241 gctcagccag cggcggcgct acgccggttc aacaggctca ggatgatccc gaccaatccc
     3301 aacacgattc cggcgatgcc gagcacgaca ccccaggtgc ccgtcgcgga cggtgcctca
     3361 ccggtggtgg tcacagtcgc cgcctggccc gggttggccg gtgtcagctt gagtactggc
     3421 gcaggatgct ccggctccgg ggcgccctcg ggggcggtgt cgatccaacg cacgacctcg
     3481 ccattgtcgt aggtttgcag ggccttgaag atcaactcat cggtgtcggt gggcaatggg
     3541 cccatggaca cgtcgaactc ctcgaacgtt ccgggtgcca ccttgccacc ggtccaggtg
     3601 atcttcgaaa cgacctcgct cacctccccg tcgtcggttc tgatcggctt gtccaacttg
     3661 gttttctgca cggtcgaggt ccagccgggc accgcacggg tcgacaccga cgccattggg
     3721 tggtcggtag ggaaattgat ctccaactgg gtggtcgagg cggtgtcccg ttcattggga
     3781 acccggaaag agactttcgt gtaaccgccc tgctgggcgg tcccggcgtt ggcggtgacg
     3841 tgcgccgagg cggtgccgac cagggtgagc agcgccaaca cgcagacggc gccgagaccg
     3901 gcaagccgac tggcccaccg ctgactgacc ttcgccatca tgagactcca tagggtgtgc
     3961 acggccctca gagcatcgtc atgagcatgt agctcatccc gatacccatg acgacctcgg
     4021 aggaaccgag aagatgaggc gagacgacca cgccgtcccc gggcgtcagc gtgttccccg
     4081 gcagggtgag ccgcgcgctc agccgcacca cgaacaccag gaaatatgcg accagtaccc
     4141 aggtcagtgc gggcaccgcc aagccggtgg agcccacccc cgccatgttc ataccatgcg
     4201 ccatgtgctg gccgactggc atcaccgcga acatgtacac catcgccaga gcgccgacta
     4261 ccaggtgcag ctcatggtgc gtgcgcggcc cacgccgcga tgccctagcc gcacgcgctc
     4321 cgcgctggat caggcgcacg gcgatgtgcc cggccactag accgaagagc acctgccagc
     4381 acagccgagg cagtggatcg agccacggca cgagcatggc taccatgccc agactcatca
     4441 caccgcgaga gagatccacg gtccggtcac cgctgctgtg cgctgaggcg tcctggcgag
     4501 gggtgagcag gcggaccacg tagaagacgg tcagcgcggc gaacatcccc gcgaacaccc
     4561 aacgcgccca ctccgcgccg gccaccactc acctcctctg gcgatcgccc gaataatccc
     4621 ttcctcaagc catagtcgtc tcgcgccccc acttagttcc cgccgggctc agcgctttgg
     4681 tgctctgtgg tgggaccctc gaaccgtgaa gccgatcgac gctggcgagc tgttgttacg
     4741 accgatccac cggccggtgg cgcgcatgct tctcgctggc gggataccgc gagggttgag
     4801 cttcgcgccg gggtacccgt ccccattcac ccatgaggtg atggaaatgg tggctgaggc
     4861 actgcagccc ggccggttcg gaccttactt catggtccgc aaggccgacg atgcaatcgt
     4921 tggcgaaata ggctgcagcg tcgaggacgc ctcggccacc ggcaaggtcg gctataccgt
     4981 ggtcgagctg tgttggggcc gtgggtacgc caccgaggca ttgcgggcgt tgctgggcca
     5041 tgtgctcgcc gagccggaca tgcgccgggt ggtggccgaa acgatggtgg agaacatcgc
     5101 cagccgccgt gtgatggaga aggccggcat gaccttctgc ggaaagcggg tcgacgtcga
     5161 tggcagtgag cctgtggatc tggtcgtcta cgaggcgctc gctgtttcag gagtcactac
     5221 caggtaaggg gtagttggct gaccgcgccg gccaccgcct cgcggaccgg ctgaatctcc
     5281 tgcaggggca cggcgagc
//
LOCUS       DASVXZ010000375         2832 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_399137, whole genome shotgun sequence.
ACCESSION   DASVXZ010000375 DASVXZ010000000
VERSION     DASVXZ010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399137"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..147
                     /locus_tag="VF788_07810"
     CDS             <1..147
                     /locus_tag="VF788_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005157072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2630 family protein"
                     /protein_id="HEX8934083.1"
                     /translation="ERAQLTSLEQQLDQCWDLLRQRRARAAAGQDPDDSQVRPVGEVE
                     GYLS"
     gene            489..1334
                     /locus_tag="VF788_07815"
     CDS             489..1334
                     /locus_tag="VF788_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934084.1"
                     /translation="MVSRGDPAPLRWLIGVELARYRNAVKLSLTEASDLSGISRAKLG
                     HLETGRQQQDPEDIARLLTTYQAEQRDIARLTSLTSRADEATWWAPWAQVVPDWLKTF
                     VGLEGLAESEFVFEPIIIPGLLQTAQYAAAVTANTPRVRADHSDRFVGFRIARTRRLT
                     DPERPLKLHAILTEGALRLAVGDPGLRQAQLRHLLAVAELPTVTIQVIRPEDGPHTAL
                     TGQFVVLGFETVRSIGYVELHDGAVYLQDADQVRTYTMVANDLQRAALAPERSIALIQ
                     SMITS"
     gene            1351..1563
                     /locus_tag="VF788_07820"
     CDS             1351..1563
                     /locus_tag="VF788_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8934085.1"
                     /translation="MAPSNTYITHWRTSSFSGNNGTCVEVAPLPDGHIAVRNSNRPHD
                     GMVLFTRAEMDAWVSGVKAGEFDDLT"
     gene            1931..2527
                     /locus_tag="VF788_07825"
     CDS             1931..2527
                     /locus_tag="VF788_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX8934086.1"
                     /translation="MSTTPVTTAAAKNMCVRALQMMADGTLEDFRAVVHPHARNREDV
                     AEPPASRGRGPAAFYATALWLRDAYAELRWVVHQGAAEGDLVVLHATMSGRHVGTFVK
                     YNDATRPVQAFPPTGKRFATTQTHWFRIADDKIIEHWANRDDLGTAMQLGWAPPSPRY
                     LARMLLATRRVRREAAPSRGVADPESNAAHRSIPDSRD"
     gene            complement(2524..>2832)
                     /locus_tag="VF788_07830"
     CDS             complement(2524..>2832)
                     /locus_tag="VF788_07830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934087.1"
                     /translation="RAALRTISENGGAQWWNFAGIEETTHRLQRAGFTDIEVALVADS
                     AVLERGAQFEAFLATVMLGAQLRELPAHQRHPFVRAVAEQLNEPVIDYVRLQIDATRA
                     "
BASE COUNT          511 a          911 c          927 g          483 t
ORIGIN      
        1 gagcgggctc agctgaccag tcttgaacaa cagctggacc agtgctggga tctgctgagg
       61 caacgtcgag cgcgcgccgc ggccggacag gatccggatg actcccaggt tcgcccggtc
      121 ggcgaggtcg agggctacct cagctgaacc gccaacggcg ggccatcatg atgtgaccaa
      181 gggttgctgg tggagaaggc gacggctccg cccgaatttg gggaggcccg ggcggggccg
      241 tcgccgctct tcaaccctct tgacagtgtc agccgcgagc cttgcagggt ttccaggacc
      301 gggccggtac cctcacccgc gactgccccg accgcaggct cggtgaggtc cgactccgca
      361 cccacagtgg gaacggctcg gtcttgctgc gctccgtcaa tcgggtccgt tcgtactcat
      421 cgaagataga cgtgtatcag ttcgggggac tatacatgat acgtctcatg acagaaccgg
      481 cggcatgaat ggtgtcgcgg ggagatccag cgccgctgcg ctggctgatc ggtgtggaat
      541 tggccaggta tcgcaacgcg gtcaagctgt cgcttaccga ggccagtgat ctgagtggca
      601 tcagccgggc gaagcttggc catttagaga ccggacgcca gcagcaggac ccggaagaca
      661 tcgcccggct gctgaccacc tatcaggccg agcaacgtga cattgcccgg cttacctcgc
      721 tcaccagccg agctgacgag gccacctggt gggcgccgtg ggcccaggtc gtgccggact
      781 ggttgaagac cttcgtcggc ctggaaggct tggccgaaag cgagttcgtc ttcgagccga
      841 tcatcattcc tggcctgttg cagaccgcgc agtatgccgc cgcagtcacg gccaataccc
      901 cgcgggttcg cgccgatcac agcgatcggt tcgtcggctt ccggatcgcg cgcactcgtc
      961 ggctcaccga tccggagcgg ccactcaagt tgcacgccat cctcacggag ggagcattac
     1021 ggcttgccgt gggtgacccg gggctgcgtc aggcgcagct ccgtcacctg ctggccgtgg
     1081 cggagctacc gaccgtcacc attcaggtga tccgaccgga ggacgggcca cacacggcgc
     1141 tcaccgggca gttcgtggta ctcgggttcg agaccgtgcg ctcgatcggg tacgtggagc
     1201 tgcatgatgg cgccgtttac ttacaagatg cagaccaggt ccggacgtat accatggttg
     1261 cgaacgacct gcagcgggct gctctcgctc ccgagcggtc cattgccctg atccaatcga
     1321 tgattacatc ctgaatgtcg gagacacacc gtggccccct caaacactta catcactcac
     1381 tggcgcacca gcagcttcag cggtaacaac ggaacctgtg tggaggtcgc gccgttaccg
     1441 gacgggcaca ttgcggttcg caacagcaac cgaccacacg atgggatggt tctgttcacc
     1501 cgggccgaga tggacgcctg ggtcagcggc gtcaaggctg gggagtttga cgacctcacc
     1561 tagtgaggtc gtcaaattct gagaccgccc agcgggtggc caacatggct aggtcgtcag
     1621 cggaggcgtc gaccagcaaa tgctcgccca gtggctcgat cggctgaggc gtgcggcagc
     1681 ggcgcgggca actaggcagt gacgttgtcc ggctaggtgg tgctgcgcat tcgatcagcc
     1741 cgtccgtggg aagcgacgag gtctgactgg ccgattcggc gcccgtacga cggcgatctc
     1801 caagccgccg gacaggggta tcagagaggt ggtgtaccac ctctcctcct ccgaagaacg
     1861 ctgtcacgcg aggtccgggg ccaggtgctc gaccgctgac cacgcgtgag aggggaactt
     1921 ggaggtgatc atgagtacca cacctgtcac gaccgccgca gccaagaaca tgtgcgtgcg
     1981 agccctacag atgatggccg acgggacact cgaagacttc cgtgcagtgg tgcatcccca
     2041 tgctcgcaac cgcgaggacg tcgccgagcc tccagctagc cggggccggg gaccggccgc
     2101 cttctacgct actgcgctat ggcttcgtga cgcttacgcc gagctgcgat gggtcgtcca
     2161 tcagggggcg gccgaggggg acctcgtcgt gctgcacgcc acgatgtcgg gtcgccacgt
     2221 agggaccttc gtgaagtaca acgacgccac acgtcccgtg caggcgttcc caccgaccgg
     2281 taagcggttc gcgaccaccc agacgcactg gttccgcatc gccgatgaca agatcatcga
     2341 gcattgggcc aatcgggacg acctgggcac cgcgatgcaa ctcggctggg ctcccccatc
     2401 accgcggtac ctggcccgga tgctgctcgc gacccgccgg gttcgccggg aggcggcccc
     2461 gtcacgcgga gtggcagatc cggaatccaa tgccgcacac cgatctattc cggatagccg
     2521 tgactaggct cgggtggcgt cgatttgcag gcgtacatag tcaatgaccg gctcattcag
     2581 ctgctcagcg accgcgcgca caaacggatg gcgctgatgt gccgggagct cgcgcagttg
     2641 agcacccagc atcacggtgg ccaggaacgc ctcgaattgt gccccgcgct ccaggaccgc
     2701 agaatccgcc acgagcgcga cttcgatgtc ggtgaagccg gcccgctgca gccggtgggt
     2761 ggtctcctcg atcccggcga agttccacca ctgcgcgcca ccattctcgc tgatggtgcg
     2821 cagggccgcg cg
//
LOCUS       DASVXZ010000376         4396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1564442, whole genome shotgun sequence.
ACCESSION   DASVXZ010000376 DASVXZ010000000
VERSION     DASVXZ010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4396
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1564442"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VF788_07835"
     CDS             complement(<1..665)
                     /locus_tag="VF788_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8934088.1"
                     /translation="MTSRPYVLLSVAMSLDGYLDDTRAARLMLSNEEDFDRVDEVRAS
                     VDAILVGANTIRRDNPRLLIRSATRQQERARRGQVAHPMKVTLTNRGDLDVMAQFFTA
                     GDSQKLVYTRDPVVPALREALDNAGTVVGAGDPIDLAVVLDDLADRKVVRLMVEGGGT
                     VHTQLLLAGLVDEIHLVIAPFFVGDAGAPRFVHPGRFPQNPERPMTLAETRQIDNLIL
                     LRYL"
     gene            772..1224
                     /locus_tag="VF788_07840"
     CDS             772..1224
                     /locus_tag="VF788_07840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HEX8934089.1"
                     /translation="MSVPGDPQQRYGQKPVEPGPEYRPGAGYDGPPAGPRNGFGVAAL
                     VLGVLALLLSWTIIGGVVFGILALIFGVLGRGRASRGEATNGGLSVAGAVLGVIGLLI
                     AIGLIALGVSLINSPAGQSFQQCLERAGGDSTMMQHCADELSRQAGGG"
     gene            1650..2474
                     /locus_tag="VF788_07845"
     CDS             1650..2474
                     /locus_tag="VF788_07845"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005460928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX8934090.1"
                     /translation="MDRPRLVASDVDGTLLDPTDQLSERTRAAVHRVVAAGVPFVLVT
                     GRPPRWIPPIVELLGYAGLAVCANGAVRYDAATDQVSHSVTLDPTQLRDAAEVVATAL
                     PGAKLAVELPTSSAAVNGVDQFLAEPGYTHPWPGADSETAPRDLLLGRPAIKMLVRQP
                     EASSDMMAAAVRELLGAQSEVPLGVTYSTGYGLIELSAPGITKGTGLARLAGELGIAP
                     ADVLAVGDMPNDLSMLRWAGHGVAMANAHPTVLEAADEITAGNSQDGLALILERWF"
     gene            2639..3442
                     /locus_tag="VF788_07850"
     CDS             2639..3442
                     /locus_tag="VF788_07850"
                     /inference="COORDINATES: protein motif:HMM:NF025049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX8934091.1"
                     /translation="MRNKIDEGRFRELLEESDDLHSDALRSARAGLDDYVEAAREARL
                     AARRETSRWGPVAAAAGVTGAATLLASGTAWAAGDDIAALQTAAGIENLAVQTYKTAL
                     TLPFIGGSSANPVVKAFAEKTMGQHNEHATAFNAAAQRLGGKPQTAPDPKYAEVVKQT
                     VPKIKGAADVVGLAITLEDVAAQTYVKNVGLVSTAELRQLFASVAGVESQHKAILLAV
                     QALVKGGTPELIALPPDLTKLPAEAGSVGFPDTFYPTAMAAPVEEGAVK"
     gene            3439..4248
                     /locus_tag="VF788_07855"
     CDS             3439..4248
                     /locus_tag="VF788_07855"
                     /inference="COORDINATES: protein motif:HMM:NF025049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX8934092.1"
                     /translation="MSVFPRRGKRAEMAISERELSQMTRELDQLHESTFSQVRTTLDE
                     LTANLGQVVRHSSTRRSFFLGAAGAVALGTVAACSSGSTPPAGQSSPAAPPQPPKETY
                     TGDLKVVALATALENLAVTAYGGALKKAGAGELGTVPPAVATFVQTAMKQHADHAQAW
                     NAVLAKAGKPTVTDAPLSITQDQVAMLAAAKSVPDVAKLALNLENIAAQTYTFATANV
                     TDPGGIITAATIQPVETMHAAILNFVLGQYPIPDTFIGVSNALKPDALTVK"
     gene            4253..4396
                     /locus_tag="VF788_07860"
     CDS             4253..4396
                     /locus_tag="VF788_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: GeneMarkS-2+.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX8934093.1"
                     /translation="MMNPPAAVTRLRLVAVARLEPTTILLTMLVGVLGLVLGCRGRAG
                     SDA"
BASE COUNT          766 a         1413 c         1494 g          723 t
ORIGIN      
        1 agatagcgga gcaggatcag gttgtcgatc tggcgagtct ccgcgagtgt catcggacgc
       61 tcggggttct gcgggaaccg accgggatgc acgaagcgag gggcaccggc gtcaccaacg
      121 aaaaacggcg cgatcacaag gtggatctcg tccacgagcc cggcaaggag gagctgggta
      181 tgaacggtgc cgccaccctc gaccatcaga cgcacgacct tgcggtcggc aagatcgtcc
      241 agtacgacag ctagatcgat cggatctccg gcgccgacca cggtcccggc attatccaac
      301 gcctcacgaa gcgctggtac caccggatca cgggtataga caagcttctg gctgtcccca
      361 gccgtgaaaa actgtgccat gacgtcgaga tcaccgcgat tggtcaacgt caccttcatg
      421 gggtgcgcaa cctggccgcg ccgcgcccgt tcctgctggc gcgtcgcgga gcggataagc
      481 aaccgcggat tgtcacggcg gatcgtgttc gcccctacca gaatggcatc gacgctggcc
      541 cgtacttcgt cgacccgatc aaagtcctcc tcgttggaca acatcaagcg ggcagcacgc
      601 gtgtcgtcga ggtagccgtc gagggacatc gccactgaca aaaggacgta cgggcgtgat
      661 gtcacgaggc cactccttgc cgatctggcg accaaccgca gcagggctgc aacctgactc
      721 ggtcggtgcc atgatggcgg gagaggctgc cgacgaggtg aggtgagccc aatgagcgtg
      781 cctggggatc cgcagcagcg ttacggacag aagccggtgg agcccgggcc agagtaccgc
      841 cccggcgccg ggtacgacgg gccccctgcg gggccccgca acggcttcgg cgtcgccgct
      901 ctggtgctgg gtgtgctcgc gctgttgctg tcctggacga ttatcggcgg tgtcgtcttc
      961 ggcatcctcg cgctgatctt cggtgtgctc ggccgtgggc gtgccagccg cggtgaagcg
     1021 accaacggtg gcctgtcggt ggccggcgcc gtactcggcg ttatcggttt actcatcgcg
     1081 atcgggctga tcgcgctcgg ggtgtcgctg atcaactcac cggccggcca gagcttccag
     1141 cagtgccttg agcgagcggg tggggatagc acgatgatgc agcactgcgc cgacgaactc
     1201 agccgccagg ccggcggtgg ctgagttcgt cgaacacttt cgacgatcaa cgtcagcggt
     1261 tgctccctgc ccgacgggcc caggcgtgcg gctgtagggc cagcttccaa ggatgaagat
     1321 cgtggatgcg cagtcactgt ggtctgctga accgggttgg ctgaacacag cgagctacgg
     1381 tttgccgcca acagcgcagg cagtgctggc cgattgacgg tcggcgcctc ggggtagcgc
     1441 gtttctcgtc gtcagcgatc agccgcgccc actgaatgcc tggttatctg agggcctcct
     1501 tccacgtcta ttccaccgaa ggtgatgtcg acctggtctt gagcgcgctc accgactaag
     1561 tacccgaggc acgggagcgc gacacaccgt gcaccggagc gcgacacgcg ggaatcctgg
     1621 atccatccac gaaaacgtag ggtcgagaca tggacaggcc gcggctggtc gcctccgatg
     1681 ttgacggcac cttgctggat ccgaccgatc agctctccga gcgcacccgg gcggcggtgc
     1741 atcgggtggt ggccgccggg gtgccattcg tgctggtcac cggacggccg ccgcggtgga
     1801 tcccaccgat cgtcgagtta ctcgggtatg ccgggctcgc ggtctgcgcc aacggtgcgg
     1861 tgcgctatga cgcagcgacc gaccaggtca gtcactcggt gacgctggat ccgacgcagc
     1921 tacgagatgc ggcggaggtg gtggctaccg ccttgcccgg tgcgaagctc gccgtggagc
     1981 tgcccaccag cagtgccgct gtgaacggcg tcgatcagtt cctcgccgag cccggctaca
     2041 cccacccctg gcccggtgcg gactccgaga ccgccccgcg ggacctgcta ctcgggcgtc
     2101 ccgcgatcaa gatgctggtc cgccagccgg aggcgagtag tgacatgatg gctgctgcgg
     2161 tgcgcgaact tctcggcgcc caatcggagg tgccgctggg cgtcacgtac tcgaccggct
     2221 acggcctgat tgagctctcc gcgccaggca tcaccaaggg caccgggctg gcccggctgg
     2281 ccggggagtt gggcatcgcg ccggctgatg tgcttgccgt tggcgatatg cccaacgacc
     2341 tgtcgatgct gcggtgggcg ggccacggtg tggcgatggc caacgcgcat cccaccgtcc
     2401 tcgaggccgc tgatgagatc acagcgggta actcccagga cggcctcgcg ctcatactcg
     2461 aaagatggtt ctgagcggtc gcgtccacgt gtcaatcgcg tgaagtgctg aaatgtaatc
     2521 ggatcgtgac cggttcgcgc cgaactgtta agggtagaag gtcgaagatc tggctacttg
     2581 ttcccgcggc attgtgacgc cgcgtgaccg gcctacccac cacaggcttg gaggctttgt
     2641 gcgaaacaag atcgatgagg gcaggttcag agagctgctg gaagagtccg acgatctgca
     2701 ctccgatgcg ttgcgtagcg ctcgggcggg gctggacgac tacgtggagg cggcccgaga
     2761 ggcccgcctg gccgctcgcc gggagacctc ccgctgggga ccggtcgcgg ctgcagcggg
     2821 ggtcaccgga gcagcgacat tgctggcgag cgggacggcg tgggcggccg gcgacgacat
     2881 cgccgcgttg cagaccgcgg ccggtattga gaatctcgcg gtgcagacct acaagacggc
     2941 attgaccttg ccatttatcg gcggcagctc agccaacccg gtcgtcaagg cgttcgctga
     3001 gaagaccatg ggccagcaca acgagcatgc gacggcgttc aacgccgccg cgcagcggct
     3061 cggtggcaag ccccagaccg ccccggatcc gaagtacgcc gaagtggtca agcaaacggt
     3121 acccaagatc aagggtgccg ctgacgtggt cgggctggcg atcacgctgg aggacgtggc
     3181 cgcgcagacc tacgtcaaga acgtcgggtt ggtgtccacc gccgagctgc ggcagttgtt
     3241 cgccagcgtc gccggggtgg aatcccagca caaggcgatc ctgctggcgg tccaggcgct
     3301 ggtcaagggc ggcactccgg agctgatcgc actgcccccg gatctgacca agctgcccgc
     3361 tgaggccggc agcgtgggct tccctgacac gttctacccc accgcgatgg ccgcaccggt
     3421 tgaggaagga gccgtgaaat gagcgtcttc ccccgccgcg gcaagcgcgc agagatggcg
     3481 atcagtgagc gcgagctgtc ccagatgacc cgcgagctcg accagctgca cgaatcgacc
     3541 ttttctcagg tccgcacgac cctcgacgag ctgaccgcga acctcggcca ggttgtgcgt
     3601 cactcctcaa cccggcgcag cttcttcctg ggcgccgccg gtgcggttgc gctgggcacg
     3661 gtcgcggcct gctccagcgg gtcaacgccg ccggcaggac agtccagccc cgcggcgcca
     3721 ccgcagccac cgaaagagac ctacaccggc gatctcaagg tagtggcgct ggccacggcg
     3781 ttggagaatc tggccgtcac cgcctatggc ggggcgttga agaaggcagg tgccggtgag
     3841 ctgggcacgg tgccaccggc ggtagccacc ttcgtccaga cggcgatgaa gcaacacgcc
     3901 gaccacgcgc aggcctggaa tgcggtgctg gccaaggcag ggaaaccgac cgtcaccgat
     3961 gcgccgctgt cgatcaccca ggatcaggtg gccatgctcg ccgcggcgaa gtcggtgccc
     4021 gacgtggcca agcttgcgtt gaacctggag aacatcgctg cgcagactta caccttcgcc
     4081 accgcgaacg tgaccgaccc tggcgggatc atcaccgcgg ccacgatcca accggtggag
     4141 accatgcacg ctgcgatctt gaatttcgtc ttaggtcagt acccgattcc ggacaccttc
     4201 atcggagtca gcaacgcgct caagcccgac gccctgacgg tgaagtgatc tgatgatgaa
     4261 cccgcccgcc gccgtaaccc ggttgcggct ggtcgcagtc gcccggttgg aaccgacgac
     4321 gatcctgctc acgatgctgg ttggcgtgct agggctcgtg ctgggctgtc gcgggcgcgc
     4381 gggcagcgac gcctga
//
LOCUS       DASVXZ010000377         2345 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1742924, whole genome shotgun sequence.
ACCESSION   DASVXZ010000377 DASVXZ010000000
VERSION     DASVXZ010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1742924"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(488..805)
                     /locus_tag="VF788_07865"
     CDS             complement(488..805)
                     /locus_tag="VF788_07865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934094.1"
                     /translation="MSTSRTSVRARRSRVASALAALLRIVGGLFVLILVAHIVLTLGD
                     ANPANSITRLVAYWADRFQLGFRGLFTPQDAKTRVIVDYGLPAAVWLIATWVLVRLVR
                     RFG"
     gene            1079..>2345
                     /locus_tag="VF788_07870"
     CDS             1079..>2345
                     /locus_tag="VF788_07870"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEX8934095.1"
                     /translation="MTPQSTNVGRSTFAAGNTSRIRLPEASPLGDQASWNPQRGSAMP
                     IHRYRAFSQTVEPVSLPDRTWPDVTISRAPLWCAVDLRDGNQALIDPMSPVRKRRMFE
                     LLVRMGFKEIEVGFPSASQADFDFVREIIIEDAIPEDVRIQVLSQCRPELIERTFEAL
                     HGARQAIVHIYNSTSILQRRVVFREEREGIKKIATSAAEMVLEYAGKYSDTDFRFQYS
                     PESYTGTELSYAAEVCNAVTEIWQPTPEAPVILNLPATVEMATPNVYADSIEWMHRNL
                     ERRDAVVLSLHPHNDRGTAVAAAELGYQAGAQRIEGCLFGNGERTGNVCLVTLGMNMF
                     SQGIDPQLDFSDIDEIRRTVEYCNQLPVSERHPYGGDLVYTAFSGSHQDAINKGLQAM
                     QVDAARAGVTVDEHRWEVPYLPIDPKDVGR"
BASE COUNT          479 a          745 c          715 g          406 t
ORIGIN      
        1 caagaaagca agtgggtgac gcccagagac ggagcgtagt ggcgtcttcc atctctacga
       61 ccattcatac ccgtcaatgg tggcggctaa gcgtcttttg caccactacg cttcgctgcc
      121 aaccaccgct ttgatgatca caatactggg gctgagctgc gcaaacacca agcggggtcg
      181 taacggagag tagccagcag tctcgttgat cagccctata tttcgactga tcaacggtct
      241 tgggactcgc taggggcggt tacccaacgt taccctcacg aggaacaacc cggctgttac
      301 ataccgaggt tgagcgtcgt ttctggctga taatcacagt aagttatgca ttcactctag
      361 tgggtggaga ttgcctcatt cacccggaat agtcgccgat cagcgcgctg agagccggac
      421 cacagccggt aatcagcgcc cggaggacag cgagctgagc taccgcgtga ccgacgtggt
      481 gacttgctca gccgaagcgt cgcaccagtc gtaccagtac ccatgttgcg ataagccaaa
      541 cggcagcggg caggccgtag tcgacaatga cgcgcgtctt ggcgtcttgc ggtgtgaaca
      601 gaccgcggaa gcccaactgg aaccgatccg cccagtacgc caccagcctg gtgatgctgt
      661 tagccgggtt cgcatcgccg agcgtgagca caatgtgcgc aaccaagatc aagacaaaca
      721 acccgcccac gatccggagc agggccgcaa gtgctgaggc gaccctgctg cgcctggcgc
      781 ggaccgacgt gcggctagtg ctcatgacag aaagtctgcc acggctgaca ccgtgcgtgc
      841 acggcactca ccggtgacgc ccgccgcacc aatgggcacc gtctctccca ccatccggga
      901 gaccggttgc ataccggact gtctccgggg ttacggtgat cgcgtggcac gcgctctcct
      961 gcttcgctgc cgcgacgggg tctgaagcga ccggcccccc gtcgcggagt cgcccgcgcg
     1021 cgcatctgcc ggtcggattc ccgactcgcc gagagctcag agagcgtaga agcagaagat
     1081 gactcctcag tccaccaacg ttggtcgcag tacattcgcc gcaggcaata ccagccgtat
     1141 ccgactgccc gaggcgtccc ctctgggtga ccaggccagc tggaatcccc agcgcggcag
     1201 cgcgatgccc atacaccgct accgagcctt ctcccaaacg gtggaaccgg tatccctacc
     1261 ggaccggacc tggccagacg tgacgatcag ccgggcaccg ttgtggtgcg cggtcgacct
     1321 acgagatggc aatcaagccc tgatcgatcc aatgagcccg gtgcgcaagc gacggatgtt
     1381 cgagctattg gtacgaatgg gcttcaagga aatcgaggtc ggcttcccct ccgccagcca
     1441 ggccgacttc gacttcgtcc gcgagatcat catcgaggac gcgatacccg aggacgtacg
     1501 tatccaggtg ctctcccagt gccggcctga gctgatcgag cgcaccttcg aggcgctgca
     1561 cggcgcccgg caggcaatag tgcacatcta caattcgacg tcgatcttgc agcgccgagt
     1621 ggtgttccgg gaggagcgcg aagggatcaa gaaaatcgcc acgtcggcgg ccgagatggt
     1681 actggagtac gcgggtaagt attccgatac cgacttccgg ttccaatatt ctccggagtc
     1741 ctacaccggc accgaactga gttacgccgc agaggtctgc aacgcggtca ccgagatctg
     1801 gcagcccacg ccggaggcgc cggtgatcct gaacctaccg gccacggtag agatggccac
     1861 cccgaacgtc tacgccgact cgatcgaatg gatgcatcgc aacctggaac gccgcgatgc
     1921 ggtggtgctc tcgctccatc cacacaatga ccgtggcacc gcggtggccg ccgcggagtt
     1981 gggctaccag gccggtgccc aacgcatcga gggctgcttg ttcggcaacg gggagcgcac
     2041 cggcaacgtg tgcctggtca cgctggggat gaacatgttc agccagggca tcgatcccca
     2101 gctcgatttc tccgatatcg acgagatccg ccgcacggtg gagtactgca accagctgcc
     2161 ggtgtccgag cggcatccct atggtggtga cctggtttac accgcgttct ccggcagcca
     2221 tcaggatgcg atcaacaagg ggttgcaggc gatgcaggtc gatgccgctc gggccggggt
     2281 cacggtagac gagcaccgct gggaggtgcc gtacctgcca atcgacccca aggatgtcgg
     2341 acgca
//
LOCUS       DASVXZ010000378         2357 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_736938, whole genome shotgun sequence.
ACCESSION   DASVXZ010000378 DASVXZ010000000
VERSION     DASVXZ010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736938"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VF788_07875"
     CDS             <1..196
                     /locus_tag="VF788_07875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016337011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934096.1"
                     /translation="DEGVITSVPDANIGSIMGIGFPPWTGGVVQYVHGYPGGVAGFVA
                     RAKELTDRYGDRFTPPSSLA"
     gene            complement(1525..1989)
                     /locus_tag="VF788_07880"
     CDS             complement(1525..1989)
                     /locus_tag="VF788_07880"
                     /inference="COORDINATES: protein motif:HMM:NF045049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934097.1"
                     /translation="MTSMLKTLAAKHKSSVSKMAARHKAKITTPHGPRTCFEARVERN
                     QGKQPLVARFGGIPLKRQKRAIPVDLAPVQITYPHTELARRLRKGKCELCQRADNAQV
                     HQIRKLAELPTSGPNRPEWMKLMAGKRRKTLVVCPPCHSLIHDGQRTTAFTA"
BASE COUNT          372 a          710 c          776 g          499 t
ORIGIN      
        1 cgacgagggc gtcatcacct cggtgcccga cgccaatatc ggctccatca tgggcatcgg
       61 gttcccgccc tggaccggtg gcgtggtgca gtacgtgcac ggctaccccg gtggggtggc
      121 cgggttcgtc gcccgcgcca aggagctcac cgaccgctac ggcgaccgct tcaccccacc
      181 gtcttctttg gcctagcggc cccgtgagtg gcgatgcgag ctatagctcg catcgccact
      241 cacgggttat ccacaggtgg acctgcagcg gcagtgctaa cggggctgcg ccccagcccg
      301 acgaggtatg ccgtggctgg ttggggtgag ggggctccgg tcggcggggt gacgaccgtg
      361 accgggtgtg ccggtccggt gtatgaaacc gctcgcagcg gttagctggc ctgctggccg
      421 cccgtccgac cggagcccac tatgacggga gcgcgcacgg tggctgatgt cttggctgat
      481 catgtggtgt tcgaggtgga gtgtagcgac cggatgtatc tcaatgtctt cggtccgcag
      541 ctgcagtacg ctggtgggtt gatcgggttt ctccagcgcc agctggggtg ttcgatcacg
      601 tcgaccgcgc cgctggggaa gatcactgat gcattcggtg cggcgatgcg ccgtttcgtg
      661 gccgagccgg gggtgccgtg ggtggacttc gtgaagggtc agcgcaagga cgatgtgatg
      721 cacgagtatc tggccgcttt cactggtacc gagggagtgt tgttcatcgg gcgggcgcag
      781 gagaagacct cgctgttccg caccgaaaaa cgccgagacg caagcgggga tgcctacccg
      841 tggatcgtga agaccactgg gatggtcaac cacttctacg tgtatgcggt ggatgcggac
      901 ttcggcccgt tcttcctcaa ggtctgttcc tattttccgt acaacgcccg actatgcctc
      961 aatggcaacg agtgggccaa acgccaggcc gtcaaagcgg ggattggctt cacgccgctg
     1021 gacaacgggt tcgcctcctg cgcggacgtg cccacgttgc aggccatctg tgatggttta
     1081 ggtccgcagc atatcgaggc gttgctggac aagtggctgg cggtcctgcc ccaccccttc
     1141 accgacgccg accacacagc cggctaccgg tatgagatct cgatcctgca agccgagttc
     1201 tccctgaccc agatgctcga caagcccgcc tcgggacgga tcttcttcga gcaggtcatc
     1261 cgggataacc tcgatattgg acgccccgac caggtcagcc tggtcttcga ccgccggctc
     1321 atgcgcaccg gcccgcgcgc cacccccggc cgattccgca cccgggtgat caccgtgggg
     1381 gtcaccccga gcctgcacgt cgactaccaa cacaccacga actgggtggg ctgcgcggcg
     1441 aggtgtctgc gagcaggtcc ttttccgcgc agcctcccgc cgaaccctgt gggcatcttt
     1501 cgatgcgcaa ggctctccag cgacctacgc cgtgaacgcc gtggtgcgtt gtccgtcgtg
     1561 gatgagggaa tggcagggcg ggcagaccac gagggtcttg cgccgcttcc cagccatgag
     1621 tttcatccat tcgggacggt ttggtcctga tgttgggagt tcagccagtt tgcggatttg
     1681 gtgcacctgc gcgttgtccg cgcgctggca gagctcgcat ttacccttgc ggagccgtct
     1741 ggcgagttcc gtgtgtgggt aggtgatctg gaccggcgcg agatcgacgg ggatcgcgcg
     1801 cttctgccgt ttgagtggga ttcctccgaa ccgtgccacc agtggttgct tgccttggtt
     1861 gcgttcgacg cgtgcttcga agcacgtgcg cggtccgtgt ggtgtcgtga tcttggcctt
     1921 gtgacgggcc gccatcttcg ataccgagga cttgtgcttc gccgccagcg tcttcagcat
     1981 tgatgtcatc gtgacccatt ccagccggtt gagctgtgag acattgtggg caggcaggta
     2041 atactggacg atgccgcgat actcggcccc gtagattcgg acgatgtcgt agtcgtccag
     2101 gttctgcaga gagcctcggt gccatggtgt gccgtatcgc aggtagggag cacatttcgt
     2161 cttgatcaca tcggctggca cccgcagcgc gatcgtcccg ttggtcgcac ggcgaccccg
     2221 ggttatcttg ccgtcacagt gctcctatga ttgtcaagcg gcaaggtgct catctttggt
     2281 cttgtgcgaa gcgacgagta tctgatagac ttctcgaacg aggagccgtt tcaaacaacg
     2341 catgatctcg cgtttag
//
LOCUS       DASVXZ010000379         3994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1633836, whole genome shotgun sequence.
ACCESSION   DASVXZ010000379 DASVXZ010000000
VERSION     DASVXZ010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3994
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1633836"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            756..929
                     /locus_tag="VF788_07885"
     CDS             756..929
                     /locus_tag="VF788_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934098.1"
                     /translation="MLAQGVSIKELAEYLGHTDPGFTSRTYTHLVASSFERARLAIDG
                     VFGLKSADGLKAA"
     gene            complement(972..2126)
                     /locus_tag="VF788_07890"
     CDS             complement(972..2126)
                     /locus_tag="VF788_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX8934099.1"
                     /translation="MNPEFEIYRLGADYAALREAVRALAEKEIAPYAAEVDELERFPH
                     EAQTALMSSGFHAVHIPEAYGGQGADSVATCMVIEEVARVCASSSLIPAVNKLGTMGL
                     LLAGSEELRHQVLPSVAAGSIASYALSEREAGSDAAAMRTRGRRDGAHWVLNGTKCWI
                     TNAGQATWYTVMAVTDPDKGASGISAFVVHKDDPGFSIGPKERKLGIRGSPTREIYFE
                     DCTIPADRIIGEPGTGFKTALATLEHTRPTIGAQAVGIAQGALDAAIAYIKQRKQFGK
                     PIADFQGVQFMLADMAMKTEAARQLVYLAAARAERGESRLGFISSASKCFASDVAMEV
                     TTDAVQLFGGYGYTRDFPVERMMRDAKITQIYEGTNQIQRLVMARALLNN"
     gene            complement(2155..2679)
                     /gene="purE"
                     /locus_tag="VF788_07895"
     CDS             complement(2155..2679)
                     /gene="purE"
                     /locus_tag="VF788_07895"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEX8934100.1"
                     /translation="MTLVGVIMGSDSDWPVMRPAAQALDEFSVPHEVSVVSAHRTPDR
                     MLDYARNAARRGLKVIIAGAGGAAHLPGMVASASVLPVIGVPVPLAHLDGLDSLLSIV
                     QMPAGVPVATVSIGGARNAGLLAIRILATSDPTLAQRMATFQQGLAQQVLAKDSALRA
                     DITRGGDADCGKPV"
     gene            complement(2676..3884)
                     /locus_tag="VF788_07900"
     CDS             complement(2676..3884)
                     /locus_tag="VF788_07900"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEX8934101.1"
                     /translation="MDPRTGLPVVGMVGAGQLARMTHQAAVALGQSLRVLAGGPDDSA
                     ALVARDVVVGSHDDLSALRRLAAGCDAVTFDHEHVPTEHLRALVAEGVVVHPGPDALA
                     HAQDKLLMRRALAGMGVLVPPFREVTGPADVVSFAAEYGWPCVLKATRGGYDGRGLWM
                     LTTPTDARQVVTRLLDAGTPLLVEQRVAMRRELAALVARSPFGQGAAWPVVQTVQREG
                     ICVEVLAPAPGLDTELAQAAQQLALHVAAALDVVGVLAVELFEMASGQLLVNELAMRP
                     HNSGHWTIEGAATSQFEQHLRAVLDYPLGSTEPRAPACVMANVLGAPTSPMMGIDERV
                     HHMMARYPQVKMHLYAKHERPGRKIGHVTVLGEALAGVRQVAVTSAAFLATGSWPDGY
                     PVHGQERGRA"
BASE COUNT          711 a         1400 c         1254 g          629 t
ORIGIN      
        1 cgccgacaca aggcctacgg acacaccacc aaccacacaa ccgcctaggc accgttaccc
       61 atcacccgaa gccaaaacgg cacccatcac gtggaaccag acaatccggc acccaatatg
      121 gcacaccaga ccaggaggcg cgagtcttgc catagagtat gccattgcca atgccacgca
      181 tgggcggctg cagaccgaaa ttgtggatat gcgcgatgcc atccttcctc tacgccgatg
      241 tatgcgggcg agagaagggc ggtggcggcc gccgcaaaaa gaagaagacc cactggcgaa
      301 agatggcaag gacaacaaga gctacaggaa gaaaagcagg gagaagggga atgacggttc
      361 ctaatacggt ttgcccaagt ccaccagacg ccgccatggt ggtggccgtg gtcgtgtcat
      421 agttaccaat gatgatgagt cgagatccgg atgcgagcag aactataaat ggtgataacg
      481 cgagggccat cagatgctca ggttttcggg ctcgtcgatc tccgcagacc ccgcgcgcgg
      541 ggtgcggcgt actaaccgga ggcgcggggg tgaccccgct tgatgacacg cacccgaccg
      601 tcgagcgccg cgccacgatc ggcaccacca cctaagcccc ggccgggctg ctggttggag
      661 cgtaatcccc cgtgcgcttc cgggcggtcc ggccggtacc acctagccga ggttggcggg
      721 accttgggcc gggttgcggc ggttacgctt cgacgttgct ggcacagggt gtgtccatca
      781 aggaactggc cgagtacctg ggtcacaccg accccggttt cacctcgcga acgtacaccc
      841 acctcgtggc gtccagcttc gagcgggccc ggctggcaat cgacggcgtg ttcgggctga
      901 aatcggctga cggcctgaag gcggcctgat catgaatcga gtaccattgg accgctatca
      961 agattgttga tctagttgtt gagcagggcg cgagccatca cgaggcgttg gatctggttg
     1021 gtgccctcgt agatctgggt gatcttcgcg tcgcgcatca tccgctcaac ggggaaatcc
     1081 cgcgtgtagc cgtaaccacc gaaaagctgc accgcgtcgg tcgtcacctc catggccacg
     1141 tcggaagcga agcatttcga cgctgaggaa ataaacccga gccggctctc gccgcgctca
     1201 gcacgggctg cggcgaggta gaccaactgc cgggcggctt cggttttcat cgccatgtcg
     1261 gcaagcatga actggacacc ttggaagtcg gcgatcggct tgccgaattg cttgcgctgc
     1321 ttgatgtagg cgattgcagc gtctaacgcc ccttgcgcga tgcccaccgc ctgcgctccg
     1381 atggtcgggc gggtgtgctc cagcgtcgct agagcagtct tgaaaccggt accgggttcg
     1441 ccgatgatcc gatccgccgg aatcgtgcaa tcctcgaagt agatctcccg ggtcgggctg
     1501 cctcggattc ccagcttgcg ttctttaggt ccgatcgaaa atccgggatc atctttgtgg
     1561 acgacaaacg cgctgatccc gctggcaccc ttgtccgggt cggtcaccgc catcaccgtg
     1621 taccaggtgg cctgcccggc attggtgatc caacatttgg tgccgttgag gacccagtgg
     1681 gcgccgtccc gccggccccg ggtccgcatc gccgccgcgt cactgcccgc ctcccgctcg
     1741 gacagcgcgt aagaggctat cgagccggcg gccaccgagg gcagcacctg atgacgcagc
     1801 tcctccgaac cggccagcag cagccccatg gtgcccagct tgttgaccgc cgggatcagc
     1861 gaggatgacg cgcacacccg cgccacctct tcgatcacca tgcaggtcgc cactgagtcc
     1921 gcgccttggc caccgtaggc ctcgggtatg tgcaccgcgt ggaagcctga gctcatcagg
     1981 gccgtctgcg cctcgtgcgg gaaccgctcc agctcgtcga cctccgcggc gtagggggcg
     2041 atctccttct cggccagcgc ccgcaccgcc tcgcgcagcg ccgcatagtc ggcaccaagc
     2101 cggtagatct cgaactccgg gttcacgggc tccccgcttc cgccacgttc tgtactaaac
     2161 cggtttaccg cagtctgcat ccccaccgcg ggtgatgtcg gcacgtagag cggaatcctt
     2221 agcgaggact tgctgggcca ggccttgctg gaaggtggcc atgcgctggg cgagggttgg
     2281 atccgacgtg gccaggatgc ggatcgccag caggccggcg ttgcgcgccc caccgatcga
     2341 gaccgtcgcg accggtaccc cagcaggcat ctgcacgatc gacagcagcg agtccagccc
     2401 gtccaggtgc gccagcggca ccggcacgcc gatcaccggt aacacactcg ccgaagccac
     2461 catgccgggt aggtgcgccg ccccgccggc cccggcgatg atcaccttca agccacggcg
     2521 cgcggcgttg cgagcatagt cgagcatgcg gtccggggtg cggtgcgcgg aaaccaccga
     2581 cacctcgtgc ggcacgctga actcgtcgag ggcctgcgcc gcgggccgca tcaccggcca
     2641 gtccgagtca ctgcccatga tcacaccgac cagggtcatg cccttccccg ttcctgcccg
     2701 tgcaccgggt acccgtccgg ccatgacccg gtggccagga aagccgccga ggtgaccgct
     2761 acctggcgca ctcccgccag ggcttcaccg agcaccgtga cgtgcccgat cttgcgtccg
     2821 ggccgctcgt gcttggcgta caagtgcatc ttcacctgcg ggtagcgggc catcatgtgg
     2881 tgcacccgct cgtcgatccc catcatcggt gacgtggggg cccccagcac gttggccatc
     2941 acgcaggccg gcgcgcgcgg ttcggtggat cccaacgggt aatccagcac cgcgcgcagg
     3001 tgctgctcga actgcgacgt cgccgcgcct tcgatggtcc agtgcccgct gttgtgtggc
     3061 cgcatcgcca gctcattgac gagcaactgc ccagaagcca tctcgaacag ctcgacggcc
     3121 agcaccccga ccacatccag cgccgccgcc acgtgcagcg ccagctgctg ggcggcctgc
     3181 gcgagctcgg tgtccaggcc cggcgctggc gccagcacct cgacacagat cccctctcgt
     3241 tgaaccgtct gcaccaccgg ccacgccgcg ccctggccga acggtgagcg ggctaccagc
     3301 gcggccagtt cccggcgcat cgccacgcgc tgctccacca gcagcggtgt gcctgcgtcg
     3361 agcagccgtg tcaccacctg gcgtgcgtcg gtgggagtgg tgagcatcca cagaccccgc
     3421 ccgtcataac caccccgagt tgccttgagc acgcatggcc agccgtactc ggcagcgaaa
     3481 gacaccacgt ccgccggccc ggtcacctcc cgaaacggcg ggaccagcac acccatgcca
     3541 gccagtgccc ggcgcatcag cagcttgtcc tgggcatgag ccagcgcgtc cggccccggg
     3601 tggaccacca ccccctcggc aaccagagcc cggagatgct cggtggggac gtgctcatgg
     3661 tcgaaggtca ccgcgtcaca gccggccgcc aaccggcgca gcgcgctcag atcgtcatgg
     3721 gagcccacca ccacgtcacg ggccaccagc gcggccgagt cgtccggacc tcccgccagc
     3781 acgcgcagag actgaccgag cgccaccgca gcctggtggg tcatccgggc cagctgccca
     3841 gcgcctacca tgccgacgac gggtaagccg gtgcgcgggt ccacgagcca gtgatcgtat
     3901 cgccttggct gcgaccagcc ggacgcggag gccgcacggg tgcaccacac gagcgtcacg
     3961 gcaacgatcc gtacactcgc ggccgtgtcc ctgg
//
LOCUS       DASVXZ010000380         2115 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1096026, whole genome shotgun sequence.
ACCESSION   DASVXZ010000380 DASVXZ010000000
VERSION     DASVXZ010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1096026"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(312..737)
                     /locus_tag="VF788_07905"
     CDS             complement(312..737)
                     /locus_tag="VF788_07905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934102.1"
                     /translation="MLKNIGVRLNIRQIPSSEYSVIVTGKRFDMFYFGISQTDPCGIA
                     YICQNYCSDSTLIKSGLNSPTLDAQLRAVNQLPTRKSSTPRLTRWKPRRSRPTGSCRD
                     QPAGHRRRQAGPGQLRRRTVLRGYAGNHRLAEVASGPAV"
     gene            complement(969..1283)
                     /locus_tag="VF788_07910"
     CDS             complement(969..1283)
                     /locus_tag="VF788_07910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934103.1"
                     /translation="MRTPFGPTSCAALSIGEFSQIMHLSVKTLRRYHEALVACGGSGN
                     RGGDTAQSMSEQAQFNPQPYENVRDGGTLTTALPEITPQFNTFEGIDRQQLREIQFQG
                     ST"
     gene            1274..1534
                     /locus_tag="VF788_07915"
     CDS             1274..1534
                     /locus_tag="VF788_07915"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8934104.1"
                     /translation="MYASTASPPVRPDRGRRRPRRRTSRGAGINRDAALQRVMDPRSG
                     IPIGRPAQPTGAAELVAFLVSDRAKAINGAEYVIDGGTVPII"
     gene            complement(1793..>2115)
                     /locus_tag="VF788_07920"
     CDS             complement(1793..>2115)
                     /locus_tag="VF788_07920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934105.1"
                     /translation="QLSPPAPGQPGPFSLGDPGVIEEAFRAAGFREVGSQPVPAPLRM
                     AHAQDYVRFARESFGALHQMLAGLTPTQREQAWQEISTELTCFEGPEGFQGPCELIIA
                     WGLK"
BASE COUNT          344 a          680 c          707 g          384 t
ORIGIN      
        1 gatgtcgccc acaccgtctg ccccgctgtc ggtgaggctg cgtaggtaaa cctcatagac
       61 gaccgcgtcg cgccaccagg gggtcttcac agccacgtgc tggttctctc ctctcggccc
      121 tcggttcagg tgctcgtgcc gccgacatgt cactcgcatt cctcaacaca gacacggcag
      181 gtctgttccc acaacgtaag cacgccgggt aggaactcca tcacggcggg acacacccgc
      241 gcggtcatgc cgcagacgcc cacgcaagtg cttgtgcgct tcacgagcgg cccgcaggct
      301 cgtatgggtg ctcataccgc cggacccgac gctacttctg ccagccgatg gtttccggcg
      361 tagccacgga gaaccgtccg gcgccgtagt tggccaggcc ctgcttgtcg gcgacgatgg
      421 ccggccggtt gatcgcggca tgaccccgta ggtcttgaac gcctcggttt ccacctcgtt
      481 agccttggcg tactgctctt gcgggtgggc agctggttga cggctcgcag ctgtgcgtcc
      541 agcgtcgggc tgttcagccc ggacttgatg agcgtgctgt ccgagcagta attctggcag
      601 atgtaggcga tgccgcacgg gtcggtctgg gagatcccga agtagaacat gtcgaaccgc
      661 ttgccggtga cgatcaccga gtactcgctg gatgggatct gccggatgtt cagccgcacg
      721 ccgatgttct tgagcatggc ggcggtgcac ccgcgactgc cttgccaacc gggtcgtcgc
      781 cagtgttgac gtaggtgaac tccaggggct tgtcatcctt gatccggatc ccgtccgggc
      841 cgggtgtcca acccgccgct tggaggcctt gctgggctgc tccgggttga aggtggtcac
      901 cttggcgaag ttgtcctggt agccgtcctg gaatggcagc aggaccatcg acccgggcag
      961 ccgtgcggtc aggtcgagcc ctggaactgg atctcccgca gctgctggcg gtcgatcccc
     1021 tcgaacgtgt tgaactgcgg ggtgatctcc ggcaaggcgg tggtgagcgt gccgccgtcc
     1081 ctgacgttct cgtacggctg ggggttgaac tgggcctgtt cggacatcga ctgcgcggtg
     1141 tcgccgccgc ggtttccgga gccaccgcag gcgaccagcg cctcgtggta acgacggagc
     1201 gtcttcacgc tcaggtgcat gatctgcgag aactcaccaa tgctcaaggc cgcgcacgag
     1261 gtcggcccga agggtgtacg catcaacagc atcacccccg gttcgtccag accgagggcg
     1321 ccgacggcct cgtcgacgca cctcccgtgg cgcggggatc aaccgtgacg cggctctaca
     1381 gcgagtcatg gatccccgca gcggcatacc gatcggccga cccgcccagc ccaccggagc
     1441 cgccgagctg gtcgcgtttc tggtgtccga ccgcgcgaag gcgatcaacg gcgccgagta
     1501 cgtcatcgac ggcggcaccg tccccatcat ctgagacaga gaggcgtgac gactcgtgcg
     1561 agctgctacc catcgaagat tgattccgag cagccatgag cggactgacc ggcggcgaac
     1621 agcctgaaac atgcgtccct tggatacgtg tcctagcggg gcctgaattg gcaccatatg
     1681 ctgacgctcc aaggtgggga agccgcgccg atgaagatcc ccatgaccgt ctcgatggtg
     1741 gcgtcgcggt tcacgaatac tggggtgccc gcggccgcga ccacgagttg ggtcatttga
     1801 gaccccaggc gatgatcaat tcgcaggggc cctgaaaacc ctcgggtcct tcgaagcagg
     1861 tcagctcggt gctgatttcc tgccaggcct gctcgcgctg ggtgggcgtg aggccggcca
     1921 gcatctggtg cagcgcgccg aaggattccc gcgcgaagcg gacgtagtcc tgggcatgcg
     1981 ccatgcgcag tggggccggt accggctgcg agccaacttc gcggaagccg gccgcccgga
     2041 aggcctcttc gatcacaccg ggatcaccga ggctgaaggg tccgggttgg ccgggtgcgg
     2101 gtggcgacag ctggg
//
LOCUS       DASVXZ010000381         4338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_309702, whole genome shotgun sequence.
ACCESSION   DASVXZ010000381 DASVXZ010000000
VERSION     DASVXZ010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4338
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309702"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..448
                     /locus_tag="VF788_07925"
                     /pseudo
     CDS             89..448
                     /locus_tag="VF788_07925"
                     /inference="COORDINATES: protein motif:HMM:NF016550.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
     gene            complement(1126..1350)
                     /locus_tag="VF788_07930"
     CDS             complement(1126..1350)
                     /locus_tag="VF788_07930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934106.1"
                     /translation="MSDAMSCAEFGDQSIELLPARTVLSLFTADPLGGGEAGKAGANG
                     QGMHGLSFLGMFGWGGSDPAPSTTDPGSQA"
     gene            complement(1494..>4338)
                     /locus_tag="VF788_07935"
     CDS             complement(1494..>4338)
                     /locus_tag="VF788_07935"
                     /inference="COORDINATES: protein motif:HMM:NF016484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052636 - arabinosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0071766 - Actinobacterium-type cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arabinosyltransferase domain-containing protein"
                     /protein_id="HEX8934107.1"
                     /translation="TVPCATLQALDARPSGGEALRTLPAEVGTTPGQGLVVATTGAIA
                     TITASGAEVLRQPLPPGDCTYQIIADAGGLRVSRDGAEIANRTDLLTPQVAELQTDAL
                     ARTAGLSVQLHTDARYQSVPTLLKTVLLIAHGLTLVALLVLAWRWWRGDGPGLVRPRP
                     SWADAVVAAVSVAWVVIGPLNIDDSWYLLMARNAMQSGYIGNVIYQFNVTENPFSASQ
                     YVMQAWGGLGQFFGPGNWSLAWMRLLPLGYGLASYALLRVLIATVLGRVARRQNTGHL
                     NTVAWAIAAAHLLWWLPYGMTLRPEPLIALGTAAVFVLAELARQRRSVGVFATAAALA
                     ALTVTASPTGAVAAAPLVLCLPWLWRWWRATTVRDRLATVLLAGAATSIVIPVAFADA
                     TLGDVLESVAVHRWYYKQNAWYDEYLHYANLLVGDERGAWGKRLPVLLTLAALFAVAL
                     RAGRRTGTAGRSGQLLGTAAAITALSLVTLAFTPTKWVNHFGAIAAPATVLLAAALIR
                     SPLPRRVGATPLAISTGALVAAASVAFAGPNLWRPFSDWGQPFGDHALVDTPYVQSLL
                     APALGPLALRNPLLWLAVAAVGWWWLRRWGPDRAVLATATCLGVTLMLLVFTIAPLRQ
                     YPGTSLTLMNLRALTGRPCGLATSVQVLTDVRSGLGPAAGSAVLAGDMRATPLPEPSR
                     LPDWAPAPIGSIWHDDVSGGSGTGTVRTPWYPMGQVNSAKTWIVVPLRGTLTAGQRLA
                     VQVGAGSPSAPDQVRTVELPALGNKPDWTEASIALADVDLAAPTALRVVVNDLVASPD
                     SWLAVGQPRLATPRPVTDVIAGRPVFADQVSAGLWPCQDQIVIRNGMAQAPALRLRAG
                     DGLEDSIIHNSVFADNGGTLLQVDRVTKVVELPARLLPPGATTLGWGHVDELVYAHPP
                     GVVDLHVQTVRRAGWVRLPTLIGERYTGRAYIG"
BASE COUNT          765 a         1508 c         1416 g          649 t
ORIGIN      
        1 aaccggtctg acagcctaaa ccggtgtcaa taaatcgggg cattccaggc atccctcacc
       61 ttggtgaggt acaaacgcca acaacaccca ccaggtcgcc cagcgggtgg ccccggactc
      121 gcgcatcgtc tacgtcgaca acgaccccct ggtgctgacc acgcccgcgt cctgctcacc
      181 agcacacccc cgagggcacg tgtcagtaca tcaacgcaga cctgcgcgaa cccaacacga
      241 tcctgcaagc ggccgccaga cgcaggactt cggccaaccc gtcgcactca tgctgaacgg
      301 gatcctgggt cacatcaccg acgacgccga ggcgtccacc atcgtaaacc gccgcgtgcc
      361 ctggagccac ctcctcaccg aggtgtaccg ccgccccggg gccgctttcc ggggtccggg
      421 gcggagctgg ttttctgatg attgctgagg aagtgcggtc aatcggcgcg cgcgctcgca
      481 tgatccgccg tcgccgcggg tggagcttgg acgtagcgga gagggctcgc cggaatcttc
      541 ccaccgtatc tatcaatact cgagaccggg cggcgcggat ttaaccggcg gagcctgctt
      601 gaggacctct ctaacgcgct ggcctgctcg gtagcggacc tcgccgccag ctcagctcgc
      661 gcgacgcggt cgccaccgtg gcgactcatt tcgtgttgca gataccggtt tgttcggctg
      721 cacaattccg ggctgacggg atggacaaca agcacccgtc agctacggga gcgactgcac
      781 ggtgtcgcag cctccccccg cggcagccgg cgctcaggtt gcgaacggca cggttgggcc
      841 ggcttccccg atcgtgccgc tcgcggtgca gcttacaaat tagacctcac cctccgagcg
      901 atgcgtttga ggcaccgccc cttgcggtag atgccgaata tgtcgtccac gtctacgacc
      961 cggtgtactc gtgtatcagg ccgccgagtc gatcgtgggc aatgcagcca tctccattcc
     1021 agaccttgtt aagtccgcta tccggaatct gggagacacg ccaccccaga tgtatgccgg
     1081 atcttggaca gccctggtgt cgaactcggc gacagttggg gttgctcagg cttggctgcc
     1141 ggggtcagtg gtgctggggg ctggatcgga tccgccccac ccgaacatcc ccaagaagga
     1201 gaggccgtgc ataccctggc cattggcacc ggccttaccc gcctcgcccc cgccaagtgg
     1261 gtcggcggtg aacagcgaca ggacggtacg tgcgggcagc agctctatgg attggtcgcc
     1321 gaactcggca cagctcatgg cgtctgacat cgagatcccc ctaggacagg caaacgaaag
     1381 gcatatcacc ggcggcagag ccggctcgtc cgtcacatac ggtgcccatc tagccacgac
     1441 gttgcaatca gtagtgctac gtaattcctt cgtcagcact actgatgccg aggtcatcct
     1501 atgtaggcgc ggccggtgta gcgctccccg atgagtgtgg ggagacggac ccacccagcg
     1561 cgccgcaccg tctggacgtg gagatcgacc acaccgggag ggtgggcgta caccagttcg
     1621 tcaacgtggc cccaacccag cgtggttgcg cccggaggca acagtcgcgc gggcagctcg
     1681 acgaccttgg taacacggtc aacctgcagc aacgtgccgc cgttgtccgc gaacaccgag
     1741 ttgtggatga tcgagtcttc cagcccatcc cccgcccgca accgtagcgc aggggcttgg
     1801 gccataccgt tccggatgac gatctggtcc tggcagggcc acaatcctgc ggatacctga
     1861 tcagcgaaca ccggtcggcc cgcgatcaca tcggtgaccg gccgtggcgt ggctagccta
     1921 ggttgcccga cggccagcca actgtcggga ctcgcgacga ggtcgttgac caccacccgt
     1981 agcgcggtcg gcgcggccag gtcgacatcg gccagcgcga tgctcgcctc ggtccagtcc
     2041 ggtttgttgc cgagtgcggg cagctccacc gtgcggacct ggtctggagc gctcgggcta
     2101 cccgctccga cctgcaccgc gagtcgctgc cccgcggtga gcgtgccgcg cagcggcacg
     2161 actatccagg tctttgccga attgacctgg cccatcgggt accagggtgt ccggacggtg
     2221 ccggtaccac tgccgccgga cacgtcgtca tgccagatcg aaccgatcgg cgccggcgcc
     2281 caatccggca gtcgggacgg ttcggggagt ggtgtcgccc gcatatcacc ggcgagtaca
     2341 gcactcccgg cggccggccc gagaccagac cgaacatcgg tgagtacctg caccgacgtg
     2401 gccagaccgc acggccgacc ggtgagggct cgcaggttca tcagcgttag cgacgtgccc
     2461 gggtactggc gcagcggcgc gatggtgaac accagcagca tcagcgtcac ccccaggcag
     2521 gtcgcggtgg ccagcacggc ccgatccggg ccccatcgcc gcagccacca ccagcccacc
     2581 gcggcgacgg ccagccacag cagtgggttg cgcaacgcca ggggccccag ggccggcgcg
     2641 agcaggctct gcacgtacgg ggtgtcgacg agggcgtggt cgccgaaggg ctggccccag
     2701 tccgagaagg gacgccacag gttggggccg gcaaaggcca ccgatgcggc ggccaccaga
     2761 gcgcctgtgc tgatagccag cggcgtggcg ccgacccgtc gcggtagcgg ggatcggatc
     2821 agcgctgcgg cgagcagcac ggtggccggc gcggcgatcg ctccgaaatg gttcacccat
     2881 ttcgtcgggg tgaacgccaa ggtgaccagg ctcaacgcgg tgatggctgc tgcggtgccg
     2941 agcagttggc cactgcgtcc tgcggtgccg gtccgccgcc ccgcccgcag ggctaccgcg
     3001 aagagcgcgg ccagggtgag gagtaccggc aatcgcttgc cccaggcccc ccgctcatca
     3061 cccaccagca ggttcgcgta atgcaggtat tcgtcgtacc aggcgttctg cttgtagtac
     3121 cagcggtgca ccgcgaccga ttccagcacg tcacccaggg tggcgtcggc gaaggcgacc
     3181 gggatcacga tcgaggtggc cgcacctgcc agcagcaccg tggcgagccg gtcgcgcacc
     3241 gttgtggccc gccaccaccg ccataaccac ggcaggcaca gcaccaaggg cgcagcggcc
     3301 accgcgccgg tgggggaggc cgtgacggtg agcgcggcga gcgcggcggc agtggcgaac
     3361 actcccaccg agcggcgctg ccgggccagc tcggccagca cgaacaccgc cgcggtaccc
     3421 agcgcgatca gcggttcagg gcgcagtgtc atgccgtagg gcagccacca cagcaggtgc
     3481 gccgccgcta tcgcccacgc aacggtgttc aggtgaccgg tgttctggcg ccgcgccacc
     3541 cggcccaaca ccgtggcgat cagcacccgc agcagcgcgt agctcgccaa cccgtagccc
     3601 aacggcaaca gccgcatcca cgccaggctc cagttgccag gcccaaaaaa ttgaccgagg
     3661 ccaccccagg cttgcatgac gtactgactt gcggaaaacg ggttttcggt gacgttgaac
     3721 tggtagatga cgttgccgat gtagcccgac tgcatcgcgt tgcgggccat cagcaggtac
     3781 cacgagtcgt cgatattgag cggccctatg accacccagg ccacggacac cgccgccacc
     3841 acagcatcag cccacgatgg gcgtggccgg accaggccgg gcccatcacc ccgccaccat
     3901 cgccaggcca gcacgagcag cgccaccagc gtgagaccgt gcgcgatcag caacaccgtc
     3961 ttcagcaacg tggggaccga ctggtagcgc gcgtcggtgt gcagctgtac cgacaagcca
     4021 gcggttcgcg cgagggcatc ggtctgcaat tcagcgactt gcggcgtcag caggtccgtg
     4081 cggttcgcga tttcagcgcc gtcacgcgac acccgcagac caccggcatc ggcgatgatc
     4141 tgataggtgc agtctcctgg tggcagcggc tggcgcaaca cctcggcacc ggaggcggtg
     4201 atcgtcgcga ttgccccggt cgtggccacc accaggccct ggcccggggt ggtgcccacc
     4261 tcggcgggca acgtgcgcag cgcctccccg ccggacgggc gggcatccag agcctgcagc
     4321 gtggcgcatg ggaccgtc
//
LOCUS       DASVXZ010000382         2295 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1364590, whole genome shotgun sequence.
ACCESSION   DASVXZ010000382 DASVXZ010000000
VERSION     DASVXZ010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1364590"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..405
                     /locus_tag="VF788_07940"
     CDS             <1..405
                     /locus_tag="VF788_07940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934108.1"
                     /translation="PASHTLLLYADDVTQLPVFTEVAQLADALAGGRMKAYLIGAATS
                     TQLDGSSVPLIVDGVGEFQGVYGATGGTGYLVRPDGYVGFRAAPLTCAGLHRHLEGVF
                     AAQPSPGQVGHDPGQRWSTIGSNDLGRSATQS"
     gene            426..1727
                     /locus_tag="VF788_07945"
     CDS             426..1727
                     /locus_tag="VF788_07945"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEX8934109.1"
                     /translation="MRRFGFMIVLSLLLAGCSSSPANTPTTGAAVAGDSPFDAPPAGI
                     TVKDAYTPVLVQVNNPPTVPVAGTDGRFHVAYNLLLQNASQVAASIRKLDVVDATNTS
                     KVLATFSNKQLVDPACNFGDCNRLRALPAMPVTDTVIPPQQARVLFVDYSFSSPREAP
                     KYVMHHLHFDGAVSPVTTTAGPVDYTVTPYRISASGPIIIGPPLKGNNWVALNGCCEP
                     GWPHRSSPVAMNGNLVGGQLFAIDWKQTNNQGAFYTGDKTKNESYVDYGSEILAVADG
                     TVTSILDGQDANAPGVLPADDPVLGPKLTVENVEGNHIVLDIGNGTYAFYAHLIKGSL
                     RVKLGDKVTKGQVIAKLGNTGNANASHLHLQIMNGPSAIASPSIPYVIDSFDYQGPIS
                     PQRIYEADNYLTGNFFGPDRHQTPEPRTNQLPMAWAIINFP"
     gene            complement(1714..1980)
                     /locus_tag="VF788_07950"
     CDS             complement(1714..1980)
                     /locus_tag="VF788_07950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934110.1"
                     /translation="MTLDVVGAERGHYFIAGDAAHGDSPTGNITGNPGGNGGEATGIL
                     VRAPDPGLPAVSAPGLWELVGVIAWPPVPGGRLWPTGDSGFMGS"
BASE COUNT          475 a          769 c          658 g          393 t
ORIGIN      
        1 cccgcatcac acacgctgct gctgtatgcc gacgacgtca cgcagttgcc ggtcttcacc
       61 gaggtcgcgc agcttgccga cgccctggcc gggggtcgga tgaaggccta tctgatcggt
      121 gcggccacgt cgacgcaact tgacggtagc tcggtgccgt tgatcgtcga tggggtgggc
      181 gagttccagg gcgtctacgg cgctactggg ggaactggct atctcgtgcg acctgacggc
      241 tatgtcggct tccgcgcggc acctctcacc tgcgccggtt tgcacagaca tctcgaaggc
      301 gtattcgccg cccagccgtc cccggggcaa gtgggtcatg acccgggcca gcggtggtcg
      361 accataggca gcaacgatct tggaagatca gcgacccaat cttaaggcat caagaagggg
      421 gcagtatgcg gcgattcggg ttcatgattg ttttatccct gctgctcgct ggctgtagtt
      481 catctccggc caatacgccg acaacaggtg cagccgtcgc tggcgactct cccttcgatg
      541 cgccgccggc tgggatcacc gtcaaggacg catatacccc cgtgctggtg caggtgaaca
      601 acccaccgac ggtcccggtc gccggaaccg atggcaggtt ccacgttgct tacaacctct
      661 tgttgcagaa cgcttctcaa gtcgctgcga gcatccgcaa gctcgacgtc gtcgatgcaa
      721 ccaataccag caaggtcctc gccacgttca gcaacaagca actggtggac cccgcctgca
      781 acttcggtga ctgcaaccgt ctccgcgccc ttccagctat gccggtaacg gacacggtga
      841 tcccgcccca acaggcacgg gtgttgttcg tcgactactc cttcagctct ccccgcgagg
      901 caccgaaata cgtgatgcac cacctgcact tcgacggggc agtcagcccg gtgacgacga
      961 ccgcgggtcc ggtggactac accgtgacgc cctaccgcat ctcagcgagt ggcccgatca
     1021 tcatcggtcc acccctgaag ggcaacaact gggtcgcgct caacgggtgt tgtgaaccag
     1081 gctggcccca tcgaagctcg ccagtggcga tgaacggcaa ccttgtcggc ggccagctgt
     1141 tcgccatcga ctggaaacaa accaacaacc aaggtgcctt ctacaccggg gacaagacga
     1201 aaaatgagag ctatgtggac tacggatcgg agatcctcgc ggtagccgac ggcacggtga
     1261 ccagcatcct ggatgggcag gacgccaacg ctccaggggt gctaccggcc gacgatccag
     1321 tgctcgggcc gaaattgact gtagagaacg tggagggcaa tcacatcgtg ctcgatatcg
     1381 gcaacggcac ctacgccttc tacgcgcacc tgatcaaggg cagcctgcgg gtcaagctag
     1441 gtgacaaggt caccaagggc caggtgatcg ccaagctggg caacaccggc aacgcgaacg
     1501 catcacacct gcatctccag atcatgaacg gtccatcggc catcgccagc cccagcattc
     1561 cgtatgtgat cgactccttt gattaccagg gcccgatctc tccccaaagg atctacgagg
     1621 ccgataacta cctcaccgga aacttcttcg gccctgaccg tcaccaaaca cccgagcccc
     1681 gcacgaacca gctgcccatg gcgtgggcaa tcatcaactt cccatgaagc ccgaatcccc
     1741 cgtcggccag agccgaccgc cggggactgg aggccacgca atgacgccga ccagttccca
     1801 cagacctggc gctgacacgg cgggcagccc cgggtcggga gcgcggacga ggatgccggt
     1861 ggcctcgccg ccattgccgc cggggttacc ggtgatattc cccgtgggtg agtcgccgtg
     1921 ggcagcatca ccagcaatga agtaatgccc acgctcagcc cccaccacat ccagggtcac
     1981 cgagctgacc ccatcgggca cggtgaacga gtccgagctg cgggtggtgt aggtacataa
     2041 ggcccgcggc attatgcacc cgctggtgac acgttcctta acgacacccc cactaagcgc
     2101 tcacccgcac aacacccgtg caggcccaac ggacccaccc gtcacccaag ccagaaagta
     2161 ccgacaggtc agttgacccc cggccgtagc tacaggagtg gtgggccgaa tacggaaccc
     2221 caccggacac tccgatcttg gtcctcattg agcagtgacc tgacactttg ttgacctgcg
     2281 aattctcaga tacct
//
LOCUS       DASVXZ010000383         3563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_40781, whole genome shotgun sequence.
ACCESSION   DASVXZ010000383 DASVXZ010000000
VERSION     DASVXZ010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40781"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VF788_07955"
     CDS             <1..597
                     /locus_tag="VF788_07955"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEX8934111.1"
                     /translation="LVGVLERAGVELLPNTAGCFTARDAVLTAKLARDAFETDWIKLE
                     VIGDDRTLLPDATELLDAAETLVADGFTVLPYTNDDPVLARRLADVGCAAVMPLGAPI
                     GTGLGIRNPHNIEMIVAQATVPVILDAGIGIASEAAQAMELGCDAVLLATAVTRADDP
                     PRMADAMRLAVQAGRHARLAGRIPQRFWAQASSPHRES"
     gene            722..1732
                     /locus_tag="VF788_07960"
     CDS             722..1732
                     /locus_tag="VF788_07960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tat pathway signal sequence"
                     /protein_id="HEX8934112.1"
                     /translation="MPRRLRLAVATVTACTALGVVGCARSRVDPPSAPEALAQPLVAG
                     PLAGTDVTPPPTPDAAPASTQSAPPPAGCPNDSGWSCAQQERFAAASAYISRNSSGKS
                     YLSVVFTDRQTGRAWRFGPTQHAGWTASTIKLAIATDLLRRQRAGQTALTVADRRDMA
                     AMLHSSDNAASDRLWAKYGGEDMLARFRNQYGMTGLHFVPGFTAKTYWGFVKCTTDDL
                     AALSNYLFSQVSPDDRAYLVSAMRGVAPNQQWGVWAAGSAQRPGNKDGWSYETDSYGK
                     HWVTNTVGFAGPDERYLVAVMYQLDPQGTLAGGAHAVSDVVALLFGVPIPAHITVPAP
                     DG"
     gene            1844..>3563
                     /locus_tag="VF788_07965"
     CDS             1844..>3563
                     /locus_tag="VF788_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX8934113.1"
                     /translation="MTRADRPPSGTDVRPVGVRLTKFRDPLHIPPVLHPSPSQQLTVR
                     MRAVHAQLHSELPLTQVWAYDGQFPGPTIEVHRDQRLRVAWENELTGSYPVTAVEVSN
                     GVPGATPGPGREGVEPLPTVAALPPWTVVHLHGSRTGGGNDGWPENAVLPGNAQLSEY
                     SNDQRATALWYHDHAMAITALNVMTGLAGMYLIRDAEESELRLPHGDHEVPLIIADRN
                     LDTDVGGTLTGRLLHKVGIVSTQPEKVTLPFLGPFTLVNGVIWPYFDVDARWYRFRVL
                     NASNSRFYTLALHDEKGATVAGALHQIGTDGGLLPAPLALDEIILAPAERADVLVDFS
                     ALQGRSLTLVNTLSPPLDPGTGGPNPDLLQFRVRARPAHDDFRLPAKLSASFVRLTHD
                     TVPEHMHRWLVLTLPAGGHPEMWEMVEIDQPPAKLPTDGIVQVTMSSGAVKTLRRVSR
                     DFKDAPNFYVDYNGWEQWSILNASPVTHPIHVHLIQFQALSRDGYDITGFDPAKGGTS
                     TPLVPKGPLPVDSNEQGWKDVIRVGGGQLVRVAGQFGGANGRYVYHCHILEHEDEGMM
                     RAFVVMP"
BASE COUNT          598 a         1257 c         1154 g          554 t
ORIGIN      
        1 ctcgtcggcg tcctcgagcg cgccggcgtc gagttgctcc ccaataccgc cggctgcttc
       61 accgcccgcg acgcggtgct gactgcgaag ctcgcgcgcg acgcgttcga gacggactgg
      121 atcaagctcg aggtgatagg cgacgaccgc acgctgctcc cggacgcgac cgagctcctc
      181 gacgcggcgg agaccctggt cgcggacggg ttcacggtgc tgccgtacac caacgacgac
      241 cctgtgctgg cccgccggct cgctgatgtg ggatgtgcag cggtgatgcc cctgggtgca
      301 ccgattggca ccggactggg tatccgcaac ccacacaaca tcgagatgat cgtggcgcag
      361 gccaccgtgc cagtcatcct cgacgccggg atcggcatcg cctcggaggc tgcccaagcg
      421 atggagctgg gctgcgacgc ggtgctgctg gccaccgccg tgacccgagc cgacgaccca
      481 ccgcggatgg ccgacgcgat gcggctggcg gtgcaggcgg gccggcacgc aaggctggcc
      541 ggccggatcc cgcaacgctt ctgggcccaa gcctccagcc cccaccggga atcttgagga
      601 gtcacagcgt ggtacccggc ctgccagagc tggcggctgt tcccccgcgt tgagctgatc
      661 atcgcgaggg gtgactggtc ggccaacaca tctcaggtag taccgtcccg ccatcacgaa
      721 catgccccgc aggctccgcc tcgccgtcgc gacggtcacc gcatgtacgg cactcggcgt
      781 ggtcggctgc gctcgatccc gcgtcgatcc gcccagtgcc ccggaggctc tggctcagcc
      841 gcttgtcgcc ggtccgttgg ctggcactga cgtgacacca ccgccgacgc cggacgcggc
      901 accagcgtca acccagtcag caccaccacc ggcgggatgc cctaatgact ccggctggag
      961 ttgcgcccag caggagcgat tcgccgccgc cagcgcttac atcagccgca attccagcgg
     1021 caagagttat ctgagcgtgg tgttcaccga tcggcagacc gggcgggcct ggcgattcgg
     1081 gcccacacag cacgccggtt ggaccgcctc gacgatcaag ctcgccatcg ccaccgacct
     1141 gctgcgcagg caacgcgccg gccagaccgc cctgaccgtc gcggaccggc gggacatggc
     1201 cgccatgctc cattcctcgg acaatgcggc ctctgaccgg ctgtgggcga agtatggcgg
     1261 ggaggacatg ctggcccggt tccgcaacca gtacggcatg accggcctgc acttcgtgcc
     1321 cggattcacc gccaagacct attggggctt cgtcaagtgc accaccgatg acctggccgc
     1381 cctgtcgaat tacctcttca gccaggtcag tcccgacgac cgcgcatacc tggtcagcgc
     1441 gatgcgcggc gtcgcgccca accagcagtg gggggtctgg gcggccggct ccgcgcaacg
     1501 gccggggaac aaggacggct ggtcctacga gaccgattct tacggcaagc actgggtgac
     1561 gaacaccgtc ggattcgccg gacccgacga gcgctacctc gtcgccgtca tgtaccagct
     1621 agatccccag ggcacgttgg ccggcggtgc gcacgccgtc agcgacgtcg tcgccctgct
     1681 cttcggtgtt cccatccctg cccacatcac ggtgccggcc cccgatggat aggcagcagc
     1741 ctcgatgact cactcccgag ctcaacagca gacctgccag agcccgatca aaccagctct
     1801 gttgtgaggc accggcacgt acggacacga cgagaggagt ctcatgaccc gcgccgaccg
     1861 gcccccgtcc gggaccgatg tcaggcctgt gggcgtgcgc ctgaccaagt tccgtgaccc
     1921 gctccacatc ccgccggtgc tgcaccccag cccgagccag cagctcaccg tccgcatgcg
     1981 cgctgtgcac gcgcaactgc attccgagct gccgctgacc caggtctggg cctacgacgg
     2041 gcagttcccg gggccgacca tcgaagttca ccgtgaccag cgcctgcggg tggcctggga
     2101 gaacgagctc accggtagct atccggtcac cgcggtggag gtatccaacg gggtgccggg
     2161 cgccactccg gggccggggc gtgagggagt agagccccta ccgaccgtcg cggcgctgcc
     2221 accctggacg gtggtgcacc tgcatggcag ccgcaccggc ggtggcaacg atggctggcc
     2281 ggagaacgct gtcctgcccg gcaacgccca gctgtcggag tactcgaacg accagcgggc
     2341 gacagcgctg tggtaccacg accacgccat ggcgatcacc gcgctgaacg tcatgaccgg
     2401 gctggccggc atgtacctga tccgggatgc cgaggagagc gagctgcggt taccccacgg
     2461 cgaccacgaa gtgccgctga tcatcgccga ccgtaacctc gacaccgatg tggggggcac
     2521 cctcaccggc cggcttctac ataaggtggg catcgtctcc acccagccgg agaaggtgac
     2581 gctgcctttc ctggggccct tcacgttagt caacggggtg atctggccgt atttcgacgt
     2641 cgacgcccgc tggtaccgct tccgggtact caacgcctcc aactcgcggt tctacacact
     2701 ggcgttgcac gacgagaagg gtgccaccgt tgctggcgcg ctgcaccaga tcggcaccga
     2761 tggcggcctg ctcccggcgc cgctggcgct ggacgagatc atcctggcgc ccgcggagcg
     2821 tgccgatgtg ctcgtcgatt tcagcgccct ccagggccgg tcgctgaccc tggtgaacac
     2881 gctgagcccg ccgctggatc cgggcactgg tgggcctaac ccggacctcc tccagttccg
     2941 ggtcagggct cgccccgcgc acgacgactt caggttgccg gccaagctct ccgcgtcgtt
     3001 cgtccggctg acccacgaca cggtgcccga acacatgcac cggtggttag tactcaccct
     3061 gcccgccggg gggcacccgg agatgtggga gatggtggag atcgatcaac caccggcgaa
     3121 gttgcccaca gacggcatcg tccaggtcac catgtccagc ggtgcggtaa agacgctgcg
     3181 gcgggtgagc cgggacttca aggacgctcc gaatttctat gtggactaca acgggtggga
     3241 gcagtggtcc atcctcaacg ccagcccggt aacccacccg atccacgtcc acctcatcca
     3301 gttccaggcc ctgagccgag acggctatga catcacgggc ttcgatcccg ccaagggcgg
     3361 caccagcaca ccgctcgtcc cgaaaggccc gttgccggtg gattccaatg agcaaggttg
     3421 gaaggacgtg ataagggtcg gtggtggcca gctggtccgc gtcgcggggc agttcggtgg
     3481 ggcgaatggg cgctatgtct atcactgcca catcctcgaa catgaggacg aaggaatgat
     3541 gcgggccttc gtcgtcatgc cca
//
LOCUS       DASVXZ010000384         2497 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1206550, whole genome shotgun sequence.
ACCESSION   DASVXZ010000384 DASVXZ010000000
VERSION     DASVXZ010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1206550"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..746)
                     /locus_tag="VF788_07970"
     CDS             complement(102..746)
                     /locus_tag="VF788_07970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934114.1"
                     /translation="MTITDIESVSARRERLHDQLVGLQFQHEQLIADARLAQSEWATA
                     VVNGEGTALLADRSRHCRVAADDCAAAIAVVSGQLAEVDGQLAELHAHADLDAQLRAH
                     ATAVETFTERLATVTGVHEVAVDGLIQLASELHELHNQVHTALREGQALNAQAAAIRA
                     QAAELQRSEQVQDAPDSKASPGRISVPACPGLSSNGTAVSGEIDLVSFGRTLPW"
     gene            complement(1949..>2497)
                     /locus_tag="VF788_07975"
     CDS             complement(1949..>2497)
                     /locus_tag="VF788_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8934115.1"
                     /translation="DVADEVAVCAVFDAAEATFGGVDVVVHAAGIMALGMVADMDLDV
                     FDRQLRTNLRGTFVVDQQAARRVRCGGAIINFSSSVLALQAPTYAGYAATKGGVEAMT
                     LILARELRGRDITVNAVAPGPTATALFLEGKDDETIQRLASQAPLERLGAPGDIAEVV
                     AFLAGPARWINGQVLRANGGIV"
BASE COUNT          477 a          780 c          775 g          465 t
ORIGIN      
        1 gacatggtgc agggcaggat cgatgcggtt gcccagttcc tcgcgccagc ggcatgtgaa
       61 gtccactctc cgcagattcg aaccctgcag agcatagacg atcaccaagg cagggtccgc
      121 ccaaagctaa caagatcgat ctcgccgcta acggctgtac cgttactact caatcccgga
      181 cacgctggca cagaaatgcg accgggtgat gccttcgaat ccggagcatc ttggacctgt
      241 tcgctacgct gcaactcggc agcctgagca cgaatcgcgg cagcttgggc gttgagagcc
      301 tggccttcgc ggagtgccgt gtggacctgg ttgtgcagct cgtgcagctc gctggctagc
      361 tgaatcagcc catcgactgc aacctcgtga acccctgtga cagttgctaa ccgctcggtg
      421 aaagtttcca ctgcggtggc gtgtgcccgc agctgagcgt ccaggtcggc gtgcgcgtga
      481 agctctgcta gctgcccgtc gacctcggcg agttgaccac tcacgaccgc gatcgctgcg
      541 gcgcaatcgt cagcggcgac ccggcaatgt cggctccggt cggcaaggag agccgtcccc
      601 tcaccattga ccacagccgt cgcccactcg ctttgtgcga gccgggcgtc agcaatcagt
      661 tgctcatgct ggaattgtag gcccacgagc tggtcatgca acctttcccg gcgagcagaa
      721 acggactcta tgtcggtgat cgtcataacc tcgcccttcg ctgctgtctc taaaaagatg
      781 acccctagcg cctttaatta ggaggtcact cggcgcgcac agcgccgtct tcaccaggtg
      841 gggggcgtgg tggtcaagat aacttaaaaa ttagcatata tgaaattagc ggatggtcag
      901 cacagccgga cccccagctc gtcagttacg ccatcagcta ccccgcaaag cgggggtact
      961 gatcgtcgac cgggtatccc ccatcctccg atgcccggat gacggtcctt tagtagttca
     1021 cggccgatgg ggaccggaaa caagttgcca ctcccgacaa tacgggctcc ctgcacccac
     1081 caaaacaccc tgtcaggcaa ccctgacact ccagggcact gtcgcattaa gcgatcgacc
     1141 cacctggcct gttccatccc cccgcagaag ccgcgcgtcg ggccttcaca tgcccggttt
     1201 gtcacgtttt tcaaacacgc tcggggtgcg gtccatacac tggtagcaat agatctttgg
     1261 tagggcatac agggggcatg ccagctcgga atagggcagc aaccgttcgc aagcgccggc
     1321 aggtgtcctg cctggtcagg ggggttttga tctgctcggt ggtcagagga ccatacgagc
     1381 ttggcccggc ttgctgaccg tccggacgcg cgagcgagag ggccggctcg gtaaaaccag
     1441 aaagcttcgt cgagagttca cccgtaggta ctcggtccct gggacttcgt agctggtcac
     1501 tgtcgcctag acacaatcag tatgacaatt acgtagtggc tgacaaaata ctacggagcg
     1561 tcatacgccg tctggcgaac ttcttctggc tataatgggg ttgccgactg gatggtgccg
     1621 tcgcaggacc atccagttaa cgagggggga ctgcaaatga gcatgctcgg ggaaagcatt
     1681 cgacgtggct cgattgtact ggcagggacg tgcctggccc tggacttgac cggtttcagc
     1741 accacggccg ggggtggacg aaatagtgcg gcaatttctg cggctgcgag caggctggcg
     1801 gagccgtcgg aacacgtccg caagtgtcca aacgggctgg tatccgcctc cgctagggac
     1861 acctgcgacc ccgagggccg cagcaacggt tagcacgtcc acatgatttg tttgcatcac
     1921 ttgctggccc aacccttaga tggatgggtt agacgatgcc gccgttggcg cgcaggacct
     1981 gaccgttgat ccagcgggcc ggaccggcga ggaatgccac aacctcggcg atgtcgccgg
     2041 gggcacccag gcgctccagc ggggcctgcg aggccagtcg ctggattgtt tcgtcgtcct
     2101 ttccctcgag gaacagcgcg gttgcggtgg ggccgggggc cacggcgttg acggtgatgt
     2161 cgcggccgcg cagctcacgg gccaggatca gcgtcatggc ctcgacaccg cccttggtgg
     2221 cggcgtagcc cgcgtaggtg ggtgcctgca gggccagcac ggagctggag aagttgatga
     2281 tcgcgccacc gcagcgcacc cggcgcgcgg cctgctggtc gaccacgaac gtgccgcgca
     2341 ggttcgtgcg cagctgccgg tcgaacacgt cgaggtccat atcggcgacc atacccaggg
     2401 ccatgattcc ggcggcgtgc acaaccacgt ccaccccgcc gaaggtggcc tccgccgcgt
     2461 cgaacactgc acagacggcc acctcgtcgg ccacgtc
//
LOCUS       DASVXZ010000385         2306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1565302, whole genome shotgun sequence.
ACCESSION   DASVXZ010000385 DASVXZ010000000
VERSION     DASVXZ010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1565302"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(227..1345)
                     /locus_tag="VF788_07980"
     CDS             complement(227..1345)
                     /locus_tag="VF788_07980"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX8934116.1"
                     /translation="MSIERIMRREGPRKLLALDGGGIRGLITVEVLAAIEREFRRGRG
                     EDFRLADEFDYVAGTSTGAIIATCVALGMSVAEIRDFYLESGREMFDRASLLRRFRTK
                     YEDDKLADKLKSVIGEDTTLGSDKLRTLLLIVMRNATTDSPWPLSNNPKAKYNLASRR
                     SEGKACNLDLPLWQLVRASSAAPTYFPPEVIDAGGPGPFLMVDGGITMYNNPAFLVFL
                     MATLEPYKLCWATGAGKMLVTSIGTGTSPKANQELEPDDMNIIYNVSSIPSALMFAAL
                     NEQDLLCRVFGNCLHGDVLDREVGDLKDGQGPVDAKLFTYVRYNAELTREWLDAHSLG
                     HIEPRHIQPLDSTKHMDQLREVGVKVAEQVKGQHFAGF"
     gene            complement(1570..2166)
                     /locus_tag="VF788_07985"
     CDS             complement(1570..2166)
                     /locus_tag="VF788_07985"
                     /inference="COORDINATES: protein motif:HMM:NF024673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEX8934117.1"
                     /translation="MSLRLLFDLPEATEPAVLLGRSSASKDVELLALRHEVAVLRRAN
                     PKPRLDWADRAVFAALVRKLPRILRKHRLVTPGTILRWHRHLVAKKWTYPNGLGRPPV
                     EDAVAVLIERLATENPTWGYRRIQGELLKLGHRVGSSTIRRIQQRLRIPPAPVRSRAL
                     SGCLSARRTSASFRTLRRPTDGTNFGCCPWSSAGPGNR"
BASE COUNT          438 a          753 c          693 g          422 t
ORIGIN      
        1 gccgaggcat caccgatctg ctggctcata tcactcctcg ctgcctcggc gaccaatcga
       61 cccgacgacc ggtgcgtctc ggatcatgat cgggcgatgt gcgggaaggc tatcggacaa
      121 agccggtccc tgcgggaacc agtgggcgtc tatcggccgt gaaagttgag ttcggccaca
      181 ccggcgagag gtgcccccgg acgtcgtacg acacccgcgc gccggctcag aagcctgcga
      241 agtgctgacc cttgacctgt tcggcgacct tgacgccgac ctcccgcaat tggtccatgt
      301 gcttggttga gtcgagcggt tggatgtgtc gcggctcgat gtggcccagt gaatgggcat
      361 ccagccactc gcgcgtcaac tcagcgttgt accgcacata ggtgaacagc ttcgcgtcca
      421 cgggcccctg gccgtccttt agatcaccaa cttcgcgatc aagcacgtca ccatggagac
      481 agttaccgaa cacacggcag agaagatcct gctcgttaag ggcagcgaac attaacgccg
      541 agggaatgga gctcacattg tagatgatgt tcatgtcgtc gggctcgagc tcctggttgg
      601 ccttcgggct cgtccccgtg ccgatcgagg tgaccaacat tttacccgca ccagtcgccc
      661 agcacagttt gtacggctcc aatgtggcca tcaggaacac caggaaggcg ggattgttat
      721 acatcgtgat gccgccgtcg accatcagga acggccccgg gccaccagcg tcgattacct
      781 ccggtgggaa gtaggtcggt gcggcgctac tcgcccggac gagctgccac aacgggagat
      841 caaggttgca cgctttcccc tccgaccgac gcgatgcgag gttgtacttg gccttcgggt
      901 tgttcgacag cggccatggc gaatccgtgg tcgcgttgcg catgacgatc agcaagagag
      961 tgcgcagctt gtcgctgccg agcgtcgtgt cctcgccgat cacgctcttg agcttgtccg
     1021 cgagcttgtc atcctcgtac ttcgttcgga atcgccgtag caggctcgcc ctatcgaaca
     1081 tctcgcggcc gctctcgagg tagaaatccc ggatctccgc gacgctcatg ccgagcgcga
     1141 cacaggtcgc gataatcgca cccgtgctcg tacccgcgac gtagtcgaac tcgtccgcaa
     1201 gcctgaaatc ctcgccgcga ccgcgacgga attcccgctc gatcgccgca agcacctcga
     1261 ctgtgatcaa cccccggata ccgcccccat ccagcgcgag cagcttgcgc ggcccttccc
     1321 gtcgcatgat tctctcgatc gacatgacca gtctcctcac acctgaaggc ccgcgatcct
     1381 cgcccgccga tgttcccgca aaacggacgt cacccgcagg ctcggcgcgt gatcctcgct
     1441 tacgccggac cgacggcgca aggggatggt ttgcgttgcg cgaaacgggg cagatgacat
     1501 cctttcctga ttagtcagat cgctgggcca gctcgtcgaa ggcagcgagt acctgcaagt
     1561 tcgactgtcc tatctgttgc ccggacctgc cgatgaccat ggacagcatc cgaaattggt
     1621 gccatctgtg ggccgtctca gcgtacgaaa cgacgcagat gttcgacgag cagacaggca
     1681 accgctcaga gcccgcgacc ggactggcgc tggagggatg cgcaaccgct gctggatgcg
     1741 gcggatcgtc gacgacccga cacgatggcc gagtttgagc agctcgccct ggattctccg
     1801 gtatccccag gtgggattct ccgtggccag gcgctcgatc agcacggcca cagcgtcttc
     1861 gacgggtgga cgcccgagac cgttgggata ggtccatttc ttggcgacca ggtgacggtg
     1921 ccagcgcagg atcgtgcccg gcgtgaccag tcggtgtttc cgcaggatcc gcggcagttt
     1981 gcggaccagc gcggcgaaca ccgctcgatc cgcccagtcc aggcggggct ttgggttggc
     2041 tcggcgcagc acggcaactt catgtcgcaa cgccaggagt tcgacatcct tggacgccga
     2101 cgagcggccc agcagcacag caggttcagt agcctcagga agatcaaata gaagacgcag
     2161 cgacacaacc cctgatcatg ccctgacggc cgagcgaacc gatcacccag gtcagagacg
     2221 ccggccgact tctggaaccc cacaggctcg gaggtctgcc agtgccatca agatcccacc
     2281 gcggctacac tctcggcggt acttgc
//
LOCUS       DASVXZ010000386         2124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_310055, whole genome shotgun sequence.
ACCESSION   DASVXZ010000386 DASVXZ010000000
VERSION     DASVXZ010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310055"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2111)
                     /locus_tag="VF788_07990"
     CDS             complement(<1..2111)
                     /locus_tag="VF788_07990"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8934118.1"
                     /translation="MDRTPVLRSSMMWDGIDEPLQVVYRRVEVPVTYGDWRGLGAQDR
                     DREVQRLLIGDRAQGFDLALAPLLRVHLARLSDTEVQVVLIFHHVLLDGWSLAQVLSD
                     VFACHAALTRADNTAATDLTLPSRRPFRDYVEWLRRQDSRLAEEHWRGALAGMERRTP
                     LPYDQAPTQAYSTTSSQWLSTGLSDKDSAGLIGFAQRHGLTLNAVVQGAWAVLLSRYS
                     GERDVCFGATVSGRPAELPGVEDITGIFINTLPVRVDVGGETRTADWLQKLHAAQAEF
                     RRFEHLPLPQLQAWTDVPGGVHLFDSIVVFENYPINDEAAATHGLAIRNLEAVETTNY
                     PLTVVVSPGRQLSIELGYDPALFNTQTITRLATHLQALLQGIADNGDLPVRDLPMLTQ
                     AEIQQILVEWTDTGHEVEVATLPKLLEAQTARTPDAMAVICEDVSLTYAHLNARVNRL
                     ARLLIERGAGPEQFVALALPRSLEMIIAMLAVLKSGAAYVPIDLNYPFDRITFMLADT
                     RPVLVVTTSEVVDRLPVGNQLVLDQADVIAAQANYADTNLTDGDRLWLLSVDSPAYVI
                     YTSGSTGQPKGVVVTHRSVCNYLLWAAQAYPSLQGCAVLHSPVSFDLTVTTLYGPLLV
                     GGSIRVTELVEEQSDLNSTPVTPCTFLKATPSHLALLKALPDAFSPTGDLVVGGEQLV
                     GEILDGWRRTHPSATVINEYGP"
BASE COUNT          447 a          663 c          625 g          389 t
ORIGIN      
        1 ggtccgtact cattgattac ggtcgcgctg ggatgggttc gccgccagcc gtcaaggatc
       61 tcaccaacca gctgctcccc cccgaccaca agatcaccgg tcggggagaa tgcatccggc
      121 aaagctttga gcagcgccag atgactgggc gttgccttga ggaaagtgca gggtgtcacc
      181 ggggtgctgt taagatcgga ctgttcctcg accaactcgg tcacccgtat ggacccgccc
      241 accagcaacg gcccgtacaa cgtcgtcacc gtcaagtcga aggacaccgg cgagtgcagg
      301 acggcgcagc cctgcaggct gggataggcc tgagcggccc acagcaagta attgcacact
      361 gaacggtgag taaccaccac acccttgggc tggcctgtcg atcccgaggt gtagatcaca
      421 taagcaggac tatccaccga caacaaccaa agccggtcac cgtcggtgag attggtgtca
      481 gcgtagttgg cttgcgccgc gataacatcg gcttgatcga gtaccaattg attccccacg
      541 ggcaatcgat caacaacctc gctcgtcgtc accaccagca ccggccgggt atcggcaagc
      601 atgaaggtga tgcgatcgaa cggatagttg agatcaatcg gcacataagc cgctcctgat
      661 ttcaacaccg ccaacattgc gatgatcatt tctaatgacc gtggtagcgc taacgccaca
      721 aattgttcag gaccggcacc ccgttcgatc aacaaccgcg ccaaccggtt cactcgtgcg
      781 tttaaatgcg catacgtcaa gctgacgtct tcacaaatta ccgccatcgc atccggcgta
      841 cgtgctgtct gggcctctag caacttcggc agggtcgcta cttctacctc atgaccagtg
      901 tcagtccatt ccaccagaat ctgctggatt tctgcctggg tgagcatggg cagatcgcgt
      961 accggtaggt cgccgttgtc ggcgatgcct tggagcagtg cctgcagatg ggtggctagg
     1021 cgagtgatgg tctgggtgtt gaacagggcg gggtcgtaac cgagttcaat ggatagctgc
     1081 cgtcccgggg atacgacgac cgtcagcggg tagttggtgg tctcgacagc ctcaagattg
     1141 cggatggcca ggccatgcgt ggcagcggcc tcatcgttga tcgggtagtt ctcgaacacc
     1201 acaatgctgt caaaaaggtg cactccaccc gggacgtcgg tccaggcctg tagctggggt
     1261 agcgggaggt gttcgaagcg gcgaaactcc gcctgagcag cgtgcagctt ctgcagccaa
     1321 tcggctgtcc ttgtttcgcc gcccacatca acacgcaccg gcagggtgtt gatgaagatg
     1381 ccggtgatgt cctccacccc gggcaactcg gccgggcgcc cggacacggt cgcaccaaaa
     1441 cacacatcgc gctcgccgct gtaacgcgag agcagcaccg cccacgcccc ctgcacgaca
     1501 gcgttgagcg tgagtccgtg gcgctgggcg aacccgatca gcccagcgga atccttatca
     1561 ctcagcccag tggacagcca ctgcgacgag gttgtgctgt acgcctgggt cggcgcttga
     1621 tcgtagggta acggtgtccg gcgctccatt cccgcgagcg cacctcgcca gtgctcctct
     1681 gcaagccggc tatcctgacg ccgcagccac tcgacgtaat ctcgaaaagg ccgtcggctg
     1741 ggtagcgtca ggtcggtggc tgcggtgtta tcagcgcggg tgagtgcagc gtgacaagcg
     1801 aatacatcgg agagcacctg ggcgaggctc caaccatcca gcaacacatg gtggaaaatc
     1861 agcactacct gaacctcggt gtccgacaac cgcgctaaat ggactcgcag caatggagcg
     1921 agcgcgaggt cgaagccctg ggcgcggtcg ccgatgagca aacgttgcac ctcacggtcc
     1981 cggtcctggg cgcccaatcc ccgccaatca ccgtaagtaa caggcacctc gacccggcgg
     2041 tacaccacct gaagcggctc atcaatcccg tcccacatca tgctgctgcg caacacgggt
     2101 gtgcggtcca ccacctgctg ccaa
//
LOCUS       DASVXZ010000387         3303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_737277, whole genome shotgun sequence.
ACCESSION   DASVXZ010000387 DASVXZ010000000
VERSION     DASVXZ010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_737277"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(577..1626)
                     /gene="ligD"
                     /locus_tag="VF788_07995"
     CDS             complement(577..1626)
                     /gene="ligD"
                     /locus_tag="VF788_07995"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEX8934119.1"
                     /translation="MGRGDALELTVPGPGGERTVRVSNPDKVYFPERGITKRQVVEYY
                     LAVSEPLLGVLAQRPVTLKRFVDGVTGEAFYAKRVPRGAPDWVDSVEITFPSGRTARE
                     VCPTEPAVLAWAANLGTFDFHPWPVRRPHLDHPDELRVDLDPQPGTGFPDAVVVAGVL
                     RDVLAEAGLVGYPKTSGGRGIHVGVRIRPEWTFVQVRRAVIALAREVVRRIPQRATVS
                     WWKEERGDRVFLDFNQAARDRTIASAWSVRGTPRATVSMPMSWDDLADVQPDDFDVLT
                     VPALLAQRGDPHAGLDGESFGLEKVLDWAARDERDHNLGDLPYPPEYPKMPGEPLRVQ
                     PSRAKRSSSENISDQ"
     gene            1680..1988
                     /locus_tag="VF788_08000"
     CDS             1680..1988
                     /locus_tag="VF788_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005439376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934120.1"
                     /translation="MRSDLGQQDEPERRRLDDDLIGLDRNDPDVQAFHEHLDRAHRLY
                     PGFTVEGYLSRVSDFAESANRAQGLRRVAAVLAVALILVTVADALWEITTVVITALLG
                     "
     gene            2021..2458
                     /gene="msrB"
                     /locus_tag="VF788_08005"
     CDS             2021..2458
                     /gene="msrB"
                     /locus_tag="VF788_08005"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEX8934121.1"
                     /translation="MDPVKSAAPTVVKSDAEWREQLTPQEYAVLRRAGTEPPGTGEYE
                     HTKTQGVYECRACGAELFRSDHKFESHCGWPSFFTPLAGDAVLLREDRSMFMKRVEVL
                     CATCHSHLGHVFEGEGYDTPTDQRYCINSISLRLVPAEGEPTG"
     gene            complement(2455..3150)
                     /gene="hemQ"
                     /locus_tag="VF788_08010"
     CDS             complement(2455..3150)
                     /gene="hemQ"
                     /locus_tag="VF788_08010"
                     /EC_number="1.3.98.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide-dependent heme synthase"
                     /protein_id="HEX8934122.1"
                     /translation="MTRLDYAALNSTIRYTMWSVFRVEPGRLPADRAEAAGEVQHYLD
                     ALEGKGVAVRGVYDLAGLRADADWMIWWHAEEIEALQAGYADLRRTTALGRASAPVWS
                     TVALHRPAEFNKSHVPAFLAGEEPKRYVCVYPFVRSYEWYLLADAERRELLAEHGMQA
                     RDYPDVRANTVASFALGDYEWILAFEADELHRITDLMRALRASRARRHVREEVPFFTG
                     PRVAVAELVTALP"
BASE COUNT          597 a         1118 c         1072 g          516 t
ORIGIN      
        1 cgacaggccc cgggaaagtg atttcccaac ccaaatcgtc acttcacgga actgctcgat
       61 aacagcccgt tagcagattc ggagatgtgt gcacgctccg agccagtggc cggatatctg
      121 ataattttcg gaaagtggcg gcccgaccca tcccgccggg gggaagaggt acgggccggg
      181 ccgccgcgag gggaccagga ccgcgcggaa agatcaccgc agcagaggta ctccggtccc
      241 actcgggagt ggggcttgat ggcggggtga catcaccaca ataggataat caacccgagc
      301 gaaaatgtgt taccacatcg catcagccag cttcactaaa gcatattgta cattcctcgt
      361 tcattcgcgg ataactccga ggtcagaaac caacgcgaga tggaatttcc acaggagtac
      421 ctcaaggcac gagcgccgac gacaggacgt aacggggccg tcaccgtgag cgatacgact
      481 ggcggcgcgt taacctcgcc tgccaccggc ggcgaggcag cgacgggcct ggcaccgggg
      541 cccgcttctc cagcgaggtg ccgggccgtc gcggttctac tggtcggaga tattttcgct
      601 gctagaccgc ttggcgcggc tcggctgcac ccgaaggggc tcgccgggca tcttcggata
      661 ttccggagga taaggtagat caccgagatt gtggtcgcgc tcgtcgcgcg ctgcccagtc
      721 cagcaccttc tccaatccaa aggattcgcc gtccagcccg gcgtgcggat cacctcgctg
      781 ggcgagcaac gcgggcacgg tcagcacgtc gaaatcgtcc ggctgcacgt ccgccagatc
      841 gtcccagctc atcggcattg agaccgtggc ccgcggggtg ccgcgcaccg accacgccga
      901 ggcgatcgtg cggtcccggg ctgcctggtt gaagtccagg aaaacccgat cgccccgctc
      961 ctccttccac cacgacacgg tggcacgttg cgggattcgc cgcaccactt cccgggccag
     1021 cgcgatcacc gcccggcgga cctgcacgaa tgtccactct ggacggatcc gcaccccgac
     1081 gtgaatcccc cggccgccgg aggtcttcgg gtaaccgacc agcccagctt cagccagtac
     1141 atcgcggagt accccggcga ccacgacggc atcggggaaa ccggtccccg gttgcggatc
     1201 gagatctacc cgcaactcgt cggggtgatc caggtgagga cggcgcaccg gccacgggtg
     1261 gaagtcgaaa gtgcccaggt tcgccgccca ggcgagtacg gcgggctcgg tgggacacac
     1321 ctcgcgggcg gtgcgcccgg acggaaaggt gatctcgacc gaatccaccc agtccggagc
     1381 gccccggggc acccgcttgg cgtagaacgc ctctccggtc accccgtcca cgaagcgctt
     1441 cagcgtgacc ggccgctgcg cgaggacgcc cagcagtggc tccgagaccg cgaggtagta
     1501 ctccacgacc tgccgcttgg tgatgccgcg ctccggaaag tacaccttat ccgggttgga
     1561 aacccgcacg gtgcgttcgc ctcccggccc gggcaccgtg agttccagtg cgtcaccacg
     1621 gcccacaacc ggcaagttac cgcataacgc ccacagggtt gagttaccgt gatgtcgtgg
     1681 tgcgaagcga ccttggccag caagacgagc ctgagcggcg tcggctggac gacgatctga
     1741 tcgggctgga tcgcaacgat cctgacgtgc aggccttcca cgagcacctg gaccgcgccc
     1801 accggctgta tcccggcttc acagtggagg gatacctgtc ccgggtgagc gacttcgctg
     1861 agtcggccaa ccgcgcacaa ggtctcaggc gggtagcggc cgtcctggcg gtcgcgttga
     1921 ttctggtcac ggtagccgac gcattgtggg agattacgac ggtcgtcatc accgcgctgc
     1981 tgggctgatg cctcatagcc gctcgcgtag cgtggtcact atggatccgg ttaaaagcgc
     2041 ggcacccacg gtcgtgaagt ccgacgcgga gtggcgcgag caactcaccc cacaggaata
     2101 cgcggtgttg cgccgggcag gcactgagcc gccggggacc ggcgagtacg agcacaccaa
     2161 gacccagggc gtctacgagt gccgagcttg tggtgcagag ctgttccgca gcgaccacaa
     2221 gttcgagtcg cactgcgggt ggccgtcgtt cttcaccccg ctggccggtg atgcggtgct
     2281 gctgcgggag gaccgcagca tgttcatgaa acgagtcgag gtgctctgcg ccacctgcca
     2341 cagccatctc gggcatgtct tcgagggcga gggctacgac acacccaccg atcagcgcta
     2401 ctgcatcaac tcgatctcgc ttcgcctggt gcctgcggag ggagagccca ccggttaagg
     2461 caatgcggtt accagctcag cgacggctac ccggggaccg gtgaagaacg gcacctcttc
     2521 gcggacgtgc cgccgggccc ggctggctcg tagcgcgcgc atcagatcgg tgatgcggtg
     2581 cagctcatca gcctcgaacg ccaggatcca ctcgtagtcg cccaacgcga aggaagcgac
     2641 cgtattggcc cgcacgtcgg gatagtcgcg ggcctgcatg ccgtgctcgg cgagcagttc
     2701 ccggcgctcc gcgtcggcca gcaggtacca ctcgtaggag cgcacgaacg ggtagacgca
     2761 gacataccgc ttgggctcct caccggccag aaacgccggc acgtggctct tgttgaactc
     2821 cgcggggcgg tgcagcgcca ccgttgacca caccggcgca ctggcccggc ccaatgcggt
     2881 ggtgcggcgg agatcggcgt atccggcctg cagcgcctcg atctcctcgg catgccacca
     2941 gatcatccag tcggcgtccg cgcgtaagcc ggcgaggtcg tagaccccgc gcaccgccac
     3001 gcccttgcct tcgagcgcgt cgaggtagtg ctgcacctcg ccggcggcct cggcgcgatc
     3061 ggccggcaac cgtcctggct cgacccggaa gaccgaccac atggtgtagc ggatggtgga
     3121 gttcagtgcg gcgtaatcca gtcgggtcat acccccatcg tcccaccacc ggccgccggg
     3181 atgacactgc tcaggtatcc ggcgatgcgc cgggccgcgg cgtcagccgt tgcgatgcag
     3241 gccggcaggc caacaccgtg cagcgtggcc ccggcaaccg ccaagccgcc ccaccctgct
     3301 acg
//
LOCUS       DASVXZ010000388         3816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1275886, whole genome shotgun sequence.
ACCESSION   DASVXZ010000388 DASVXZ010000000
VERSION     DASVXZ010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275886"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VF788_08015"
     CDS             <1..224
                     /locus_tag="VF788_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-(1-2)-phosphatidylinositol
                     mannosyltransferase"
                     /protein_id="HEX8934123.1"
                     /translation="GVLVAAGSPTALSTALDELLDDPERRAALAAAGRRRAAMWDWPV
                     VARRVLQVYEGAFAADPRRLLRARRRISS"
     gene            247..747
                     /locus_tag="VF788_08020"
     CDS             247..747
                     /locus_tag="VF788_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005445297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX8934124.1"
                     /translation="MRFAWVAVTVGVSGAAWGAIRAATRLDRLHMRTDAAWAALDAAL
                     HQRALAVSALNGNVALCGAALAAVHAQPSAREELENELGRVLSALNRGGLAPASASRL
                     ADAEQRVVIARRVYNDAVRDTRALRLHRMVRWLRLAGTAPLPRYFEIAEPALAGYGPE
                     LDGAGA"
     gene            complement(714..2852)
                     /locus_tag="VF788_08025"
     CDS             complement(714..2852)
                     /locus_tag="VF788_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020420713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G-like protein EF-G2"
                     /protein_id="HEX8934125.1"
                     /translation="MGIKGSGERADSAMAVEDPSAIRNVALVGPSGAGKTTLVEALLA
                     ATGVISRAGTVTDGTTVCDHDPAAVRQQRSVTLAIAPLHHADIKINLVDTPGYADFLG
                     ELRAGLRAADAALFVISAGEDVDPTTVALWQECAEVEIPRAVVISRLDNPRADLESVT
                     TACRAAFGDGVLPLYLPVRDGGGAVTGLVGLLSQRLFDYSNGYPPVDSPAFEDKPSGI
                     DPDEFAVARNELIEGIIAESEDESLMELYLEGADLDAGVLIEDLETAVTRGTFHPVIP
                     ACAHTGVGLSEILEILAGAFPSPVQHTPPPVTRTDGSAHPPVEVDPAAALVAEVVRTT
                     VDPYQGRVSLVRVFSGTLYPDRPVHVSGHGLADRGHADHDVDERVAHVYTPLGGTLHD
                     VPHCVAGDLCAVTKVVSAETGDTLSSPNDSLLVEPWTMPEPLLPVAVVGRSRSDEDAL
                     ARGLGRLVAADPTLRLERNAETHQMVLWCMGEAHADVVLSRLRAVGADVDTEPVVVPL
                     RETFAGPSKGHGRHVKQSGGHGQYAVCDIEVEPLPRGSGFEFVDKVVGGAVPHQFIPS
                     VEKGVRAQMERGLSNKGFPLVDLRVTLVDGKAHSVDSSDAAFQMAGSLALKDAAEKGT
                     VVALEPLDDVEVRMPEDHLGTVLGDLSGRRGRVLGTETDQAGRMLVRAEVPAAELMRY
                     AVDLRGLTSGTAVFTRRFSRYAPAPSSSGP"
     gene            3046..>3816
                     /gene="pdxS"
                     /locus_tag="VF788_08030"
     CDS             3046..>3816
                     /gene="pdxS"
                     /locus_tag="VF788_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010311147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEX8934126.1"
                     /translation="MPAENSTIDRTIGTARVKRGMAEMLKGGVIMDVVTPEQARIAET
                     AGAVAVMALERVPADIRAQGGVARMSDPDMIAAIMDAVSIPVMAKARIGHFVEAQVLQ
                     AIGVDYIDESEVLTPADEAHHIDKSAFTVPFVCGATSLGEALRRISEGAAMIRSKGEA
                     GTGNVVEATRHMRSIRAGIRSLTAMHPDELPAAAKELAAPLELVREVAAAGSLPVVLF
                     TAGGIATPADAAMMMQLGAEGVFVGSGIFKSGDPAKRAE"
BASE COUNT          596 a         1273 c         1313 g          634 t
ORIGIN      
        1 ccggcgtgct ggttgcggct ggatcaccga ccgcgctgtc cacggccctc gatgagctgc
       61 tcgatgatcc ggagaggcgc gctgcgctcg ccgccgctgg ccggcggcgg gcggcgatgt
      121 gggactggcc ggtggtggca cggcgggtgc tgcaggtata cgagggtgcg ttcgcagcgg
      181 atccgcgccg gttgctccgg gcccggcgcc ggatttcatc gtgaccggcc tggctagggt
      241 cgcgtgatgc gctttgcctg ggtggcggtg accgttgggg tgtcaggagc cgcttggggt
      301 gcgattcgcg cggcaacgcg gttggaccgg ttgcatatgc ggaccgacgc agcctgggcg
      361 gcgctggacg ctgcgctaca ccagcgagcg ctcgcagtga gcgcgttgaa cgggaacgtc
      421 gcgctgtgcg gtgcagccct cgcggccgtg cacgcccagc catcggctcg tgaggaactg
      481 gagaacgaac tgggccgggt gctctctgcg ctcaaccgtg gcggactcgc gcctgccagc
      541 gccagccggt tggccgacgc ggagcagcga gtggtgatcg cccggcgggt ctacaacgac
      601 gccgtgcgag acacccgggc gttgcgcttg caccgcatgg tgcgctggtt gcggttggct
      661 ggtaccgccc cgttaccgcg ctatttcgag attgcggaac ccgcgctcgc cggctacgga
      721 cctgagctgg atggtgcggg ggcgtagcgc gagaaacgtc gggtgaacac ggccgtgccc
      781 gaggtcagcc cgcgcagatc gacggcgtag cgcatcagct cggcggcggg tacctcggcg
      841 cggaccagca tcctgccggc ctggtcggtc tcagtgccca gcacccggcc tcgcctgccg
      901 gagaggtctc ccaacacggt gcccaggtgg tcctcgggca tccgtacttc cacgtcgtcc
      961 agcggctcca gggcgacgac cgtacccttc tctgccgcgt ccttgagcgc cagcgatccc
     1021 gccatctgga aggccgcatc ggaggagtcc acgctgtgtg cttttccgtc gaccagcgtt
     1081 actcgcaggt ccaccagcgg gaaacccttg ttggacaggc cgcgttccat ctgcgcccgg
     1141 acgcccttct ccacgctcgg gatgaactgg tgcgggaccg cgccgccgac aaccttgtcc
     1201 acgaactcga aacctgatcc cctgggcagc ggttccactt cgatgtcgca taccgcgtac
     1261 tggccgtgcc caccggactg cttgacgtgc cggccgtgcc ccttggaggg accggcgaag
     1321 gtctcgcgca acggcaccac caccggctcg gtgtccacat cggcgcccac ggcgcgcagc
     1381 cgggacagca cgacatcggc gtgcgcctcg cccatgcacc acagcaccat ctggtgggtc
     1441 tcggcattgc gctccagccg cagggtcggg tccgcggcca ccaaccggcc cagcccgcga
     1501 gctagcgcgt cctcatcgct gcggctgcga cccaccaccg ccaccggcag caacggctct
     1561 ggcatcgtcc agggctccac gaggagggag tcgttaggcg aggacaaggt gtctcccgtt
     1621 tcggcggata ccaccttggt taccgcacag agatccccgg ccacacagtg tggtacgtcg
     1681 tggagcgtgc cgcccagcgg cgtgtagacg tgcgccacgc gctcgtcgac gtcatggtcg
     1741 gcgtgtccgc ggtcggccaa accatgcccg gagacgtgca cagggcggtc cggatacaga
     1801 gttcccgaga acactcgcac caatgacacc cgaccctggt aagggtcgac ggtagtgcgg
     1861 acgacctccg ccaccagcgc cgccgcaggg tccacctcca ccggagggtg agctgagccg
     1921 tccgtccggg ttaccggagg cggtgtgtgc tgtaccgggc tggggaacgc gccggcgagt
     1981 atctcaagga tctccgagag acccactccg gtgtgggcac aggctgggat caccggatga
     2041 aaggtgccgc gggtgacggc cgtctccaga tcctcaatca ggacaccggc gtcgaggtcc
     2101 gcgccttcga gatagagctc catgagggac tcgtcctcgc tttcagcgat gatcccctcg
     2161 atgagctcgt tgcgcgccac cgcgaattcg tcggggtcta tcccgctggg cttgtcctca
     2221 aacgccgggc tatcaaccgg cgggtacccg ttgctgtagt cgaacaaccg ttgcgagagc
     2281 agccccacca gaccggtgac ggcgccgcca ccgtcgcgca ccggcaggta cagcggcagt
     2341 actccgtcgc cgaaggccgc ccggcaggcg gtggtcacgc tctccagatc cgcccgcggg
     2401 ttgtccagcc ggcttatcac caccgcgcgg gggatctcaa cctcggcaca ttcctgccac
     2461 agcgcgacgg tggtggggtc aacatcctcg cctgcggaga tcacgaacag tgctgcgtca
     2521 gcggcccgca gtccggcccg cagctcgccc aggaaatcgg cgtacccagg agtgtccaca
     2581 aggttgatct tgatatcagc atggtgcagg ggcgcgatgg ccagtgtcac cgatcgttgc
     2641 tggcgcaccg cggcggggtc gtggtcgcat acagtcgtgc cgtcagtgac cgtgcccgct
     2701 cggctgatca caccggtggc agcgagcagc gcctccacga gcgttgtctt gcccgcaccg
     2761 gatggcccga ccagagccac attgcggata gcggatgggt cctctaccgc catggccgaa
     2821 tcagcacgct caccgctgcc tttgatgccc atgaagcccc acctcgcatg tgcggaccgt
     2881 gtggtcgatc tcacaccggt gtggcggtcg aggcaacccc ctagccggtc ttcactcccg
     2941 acctcgtgtg caacccgacg tacgatcggg tactggtgac tcgtgccatt tcctgtttcc
     3001 cgccatggcc ttagccatgg cgctgtccag aggagcgaac ctgccgtgcc cgccgagaac
     3061 agcacgatcg atcgcacgat tggcaccgca cgggtgaagc gtgggatggc tgagatgctc
     3121 aaaggcggtg tgatcatgga tgtggtcaca ccggaacaag ccaggatcgc cgagaccgcg
     3181 ggcgcagtgg ccgtgatggc gttggagcgg gttccagcgg atatccgcgc gcagggcggc
     3241 gtggctcgga tgagtgatcc cgacatgatt gcagcgatca tggacgcggt gtccatcccg
     3301 gtgatggcca aggctcgcat cggacatttt gtcgaggcgc aggtgctgca ggcgatcggc
     3361 gtcgattaca tcgacgagtc cgaggtgctg accccggccg acgaagcgca ccacatagac
     3421 aagtccgcct tcacggtgcc gtttgtatgc ggggcgacca gcctcggtga ggcgttgcgc
     3481 cggatctcgg agggcgccgc catgatccgg tcgaagggcg aggccgggac cggtaacgtc
     3541 gtcgaggcga ctcggcatat gcgctcgatc cgcgctggca tccggtcgct gacggcgatg
     3601 caccctgacg agctgcctgc ggccgccaag gagctggccg ctccgctgga gctggtccgc
     3661 gaggtcgcgg cggccggttc gttgccggtg gtgctgttca ccgcaggtgg tatagccacc
     3721 cccgctgacg cggcaatgat gatgcagctc ggcgccgagg gagtgttcgt cggctcgggt
     3781 attttcaaat cgggtgaccc ggccaaacgg gcggag
//
LOCUS       DASVXZ010000389         8062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1207255, whole genome shotgun sequence.
ACCESSION   DASVXZ010000389 DASVXZ010000000
VERSION     DASVXZ010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8062
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1207255"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            313..3696
                     /locus_tag="VF788_08035"
     CDS             313..3696
                     /locus_tag="VF788_08035"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019806385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004736 - pyruvate carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009374 - biotin binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HEX8934127.1"
                     /translation="MFRKVLVANRGEIAIRAFRAAYELGCQTVAVFPYEDRNSEHRLK
                     ANEAYQIGERGHPVRAYLSVPDIIRAAQRTGADAVYPGYGFLSENPELAMACEQAGIT
                     FIGPPPAVLALAGNKSRAVAAARAAGVPVLESCAPSADIDQLMAAAESIGFPMFVKAV
                     SGGGGRGMRRVTEPSGLRMALEAASREAESAFGDPTVFLERAVIDPRHIEVQILADAT
                     GQVIHLYERDCSVQRRHQKVVEVAPAPNLDPELRQRICADAVAFAAQIGYVNAGTVEF
                     LVDRNGDHVFIEMNPRIQVEHTVTEEITDIDLVTAQLRIAAGETLADLDLCQEEIAPH
                     GAALQCRITTEDPANEFRPDIGTVTAYRSASGAGVRLDGGTMQTGAQISAHFDSLLVK
                     VTCRGRDFPTAVRRARRALAEFRIRGVATNIPFLLALLDEPDFVAGKVTTSFIEKRPH
                     LLAARQSADRGTRLLSYLGDVTVNRPHGDPPDLANSVGKLPPIDLETRPPSGSRHRLL
                     TLGPEKFAQWLRAQEQVGVTETTFRDAHQSLLATRVRTRDLVAVGPHVARMTPQLLSV
                     ECWGGATYDVALRFLAEDPWERLAALREAIPNLCLQMLLRGRNTVGYTPYPTEVTTAF
                     IEQAVETGLDIFRIFDALNDVSQMRPAIDAVRETGRAVAEVALCYTADLCNPAEKLYT
                     LDYYLRLAEQIVAAGAHVLAIKDMAGLLRPPAARTLVTALRSRFDLPVHLHTHDTPGG
                     QLAALLTAIDAGVDAVDAAAASMAGTTSQPSLSALVAATEHTKRETGLDLQAVCDLEP
                     YWELVRKVYAPFESGLASPTGRVYHHEIPGGQLSNLRQQAVALGLADRFEQIEEAYAA
                     ADRMLGRLVKVTPSSKVVGDLALHLVGAGVEPEEFEADPARFDIPDSVIGFLHGELGV
                     PPGGWPEPLRSKALQGRSPPRAMAELSAQDRQGLKDDRTRTLNRLLFPAPTAEFEQRR
                     ETYGDTSVLPSKEFFYGLRPGEEYAVDLYPGVRLLIQLQAIGDVDERGMRTVLCTLNG
                     QMRPLQVRDRSVASKIPVAEKADRANGNHVAAPFAGVVTLQVSEGDTVSAGQTVATIE
                     AMKMEAGITASKPGRVARLAIKSVQQVEGGDLILELRSP"
     gene            3805..4359
                     /gene="rsmD"
                     /locus_tag="VF788_08040"
     CDS             3805..4359
                     /gene="rsmD"
                     /locus_tag="VF788_08040"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEX8934128.1"
                     /translation="MVRIVAGVAGGRRLVVPPHGTRPTSDRVREAVFSALQARRDLEG
                     AQVLDLYAGSGALGLEALSRGAVHVRFVESDRRAAAVLRRNVEALGLPGAQVSTADVP
                     VVLRGGSDRRYDVVLADPPYALDDGALTEVLSALARGGWLAPQALIVVERAIRAFPPT
                     WPAGVFALTNRRYGDTVVYYGCAP"
     gene            4356..4838
                     /gene="coaD"
                     /locus_tag="VF788_08045"
     CDS             4356..4838
                     /gene="coaD"
                     /locus_tag="VF788_08045"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEX8934129.1"
                     /translation="MRRAVCPGSYDPATNGHLDIIERAARQFDEVVVAVLVNKAKSCL
                     FEVSDRMAMLKEITGHLANVRIDSWHGLLVDYCTANGIATIVKGLRAVSDFDYELQMA
                     QLNYQLSGVDTMFLPSKPHYSYLSSSVVKEVAAYGGDVGHLLPATVHQRLINRLGEGS
                     "
     gene            4931..5638
                     /locus_tag="VF788_08050"
     CDS             4931..5638
                     /locus_tag="VF788_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8934130.1"
                     /translation="MYRVFEALDELVTTVEEARGVPMTSSCVVPRGDVLELLDDIRDA
                     IPAEFDDAQDVLDHRSELVETARQEAQRQREEARNEADRAVTEARDEAARLLAGARAR
                     AESMVADAQAEAARIADTAHREYQELTGRAETEAERMTAAGRASYERAVADGRAEQSR
                     LVEQTQVMQAARAEATRIHDEARTEAHRLRSECDAYVESTLGEFEDLLNTTLRAIGRG
                     RAQHNGPVPAGVAGYRS"
     gene            5696..6277
                     /locus_tag="VF788_08055"
     CDS             5696..6277
                     /locus_tag="VF788_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceD family protein"
                     /protein_id="HEX8934131.1"
                     /translation="MMPRRTVSPRPDPSSPWVIDTRDLGRRPGAMRRYHRVVQLTAGL
                     GLDVIGIPAGEEVVLDVRLESVMEGVLVSGTAVATITGQCARCLDLLTNRLEIELTEL
                     FAYPDTATEATTDPDEVSRVVDGLLDLEPVVRDAVLLALPQAPLCTEDCPGLCPECGG
                     KRAELGTDHRHEKIDPRWAALKPRLRGSEEENE"
     gene            6279..6461
                     /gene="rpmF"
                     /locus_tag="VF788_08060"
     CDS             6279..6461
                     /gene="rpmF"
                     /locus_tag="VF788_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEX8934132.1"
                     /translation="MAVPKRRMSRSNTRSRRAQWKTTAPTLAECSNRACRRPKPPHVL
                     CPYCGRYDGRQVSRPA"
     gene            6528..7226
                     /gene="rnc"
                     /locus_tag="VF788_08065"
     CDS             6528..7226
                     /gene="rnc"
                     /locus_tag="VF788_08065"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012796435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEX8934133.1"
                     /translation="MLTALDVEIDAELLTLALTHRSYAYESGGIEPNERLEFLGDAVL
                     GVVVTDHLFRTHPDLPEGQLAKLRASVVNMHALAGVARGLGPGGLGEYLLLGRGEELT
                     GGRHKSSILADTTEALIGAVYLQHGIDVARTMVHRLFDPLLVVAPLLGAGLDWKTSLQ
                     ELTASRELGVPEYRITEVGPDHLKEFTATAVIAGVERGTGQGRTKKEAEQRAAETAWR
                     SLSELASGSAPPAG"
     gene            7233..>8062
                     /gene="mutM"
                     /locus_tag="VF788_08070"
     CDS             7233..>8062
                     /gene="mutM"
                     /locus_tag="VF788_08070"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HEX8934134.1"
                     /translation="MPELPEVEVVRRGLAEHVAGRTVCGVEVRHPRSVRRHLAGELDF
                     TARLRGRQIRAVRRRGKYLWLDLGDGDALLAHLGMSGQMRIQHPGAIDETHLRVRIQF
                     VDGDPELRFIDQRTFGGLSIEEVIDGLPIPVAHIARDPLDPLFELDEVIAGIQARRTG
                     LKRALLDQTLISGIGNIYADEALWRAQLHGAQPTATLTRAQGRTVLSAVTEVMTEALA
                     AGGTSFDALYVNINGASGYFDRSLAAYGQAGRPCPRCGIAIQREPFMNRSSFSCPRCQ
                     P"
BASE COUNT         1336 a         2636 c         2726 g         1364 t
ORIGIN      
        1 cggtcgtccc accgggcccc ggcggtggaa gtggtggtag gtgtacctgc tgcccatcgg
       61 catgtccttt ccggccacct tccttgatac ccctccggcc gctaacgcgg caggggcatc
      121 ccgcacgtgg gcaaacagac atcccgataa ccgtcatcac ctgcgatgat gcaccacagc
      181 gcccgacttg gagatataca ggggtctggg ggtgcccacc gcccccgata tgcctccatg
      241 tcgggtgccg tgtgctcggt ggtgcgggac ggaaatcctg gtcggatcag tcgtggggaa
      301 gggagctggc acgtgttccg gaaggtgctg gtcgccaacc gcggggagat cgcgatacgg
      361 gcttttcggg ccgcctacga gctgggttgc cagacggtcg cggtgttccc gtatgaggat
      421 cgcaactccg aacaccggct caaggccaac gaggcctacc agatcggaga gcggggtcat
      481 cccgtccggg cgtacctttc cgtgccggat atcatccggg ccgcccaacg cactggggct
      541 gacgcggttt atcccggtta cggcttcctg tcggagaacc cggagcttgc catggcctgc
      601 gagcaggctg gcatcacctt tatcggacca cctccggctg tgctggcgct ggcaggtaac
      661 aagtcgcggg cggtggccgc cgcacgcgcc gccggcgtgc cggttctgga atcctgcgcg
      721 ccgtctgccg acatagacca actgatggct gccgccgagt cgatcggatt cccgatgttc
      781 gtcaaggccg tctcgggggg tggcgggcgc gggatgcgca gggtcaccga gccttccggc
      841 ctgcgcatgg cattggaggc agccagccgg gaggctgagt cggcattcgg cgatcccacc
      901 gtgttcctcg aacgcgcggt catcgatccc cgacacatcg aggtgcagat cctcgccgat
      961 gccactggcc aggtgatcca cctctacgag cgggactgct cggtacagcg acggcaccag
     1021 aaagtcgtgg aggtggcgcc ggcgccgaac ctggaccccg agctgcggca gcggatctgc
     1081 gcggatgctg tggcgttcgc tgcgcagatc ggttatgtga acgccggcac cgtggagttc
     1141 ctcgtcgacc gcaatggtga ccatgtgttc atcgagatga acccgcgcat ccaggtcgag
     1201 cacaccgtga ccgaggagat caccgacatc gacctggtca ccgcccaatt gcggatcgcg
     1261 gccggggaga ccctcgccga cctcgacttg tgccaagagg agatcgcgcc gcacggcgcc
     1321 gccctgcagt gcaggatcac caccgaggat ccggccaacg agttccgccc ggacatcggg
     1381 accgtcaccg cataccgctc ggccagcggc gccggggtcc ggctggatgg cggaaccatg
     1441 cagactggtg cccagatcag cgcgcacttc gattccctgc tggtcaaagt cacctgccgg
     1501 gggcgcgact tccccaccgc agtgcgccgg gcgcgccgag cactcgctga attccgtatc
     1561 cgcggagtgg ccaccaacat ccctttccta ctcgccctgc ttgacgagcc ggatttcgtg
     1621 gcgggcaagg tcaccacctc gttcatcgag aagcggccgc accttcttgc tgcccggcag
     1681 tccgccgatc gtggcacccg gttactgagc tacctcgggg acgtgacggt gaatcggccg
     1741 cacggtgatc cccccgacct agccaattcg gtggggaagc ttccgccgat cgatctggag
     1801 acccggccgc cctccgggtc ccggcaccgg ctcctcaccc tgggcccgga gaaattcgcc
     1861 cagtggttgc gggctcaaga gcaagtcggc gtcaccgaaa ccaccttccg ggatgcccac
     1921 caatcgttgc tggcaacccg ggtacggacc agggacctcg ttgctgtggg cccccacgtg
     1981 gctcggatga ccccgcaact gctgtcagtc gagtgctggg gtggtgcgac ctatgacgtg
     2041 gcgctgcgct tcctggctga ggacccgtgg gagcggctgg ccgcactgcg cgaggcgatt
     2101 cccaacctgt gcctgcagat gctgttgcgc gggcgcaaca cagtcggcta caccccgtac
     2161 cccaccgagg tgaccaccgc cttcatcgag caggccgtcg agaccgggct ggacatcttc
     2221 cgcatcttcg acgcgctcaa tgacgtgtcc cagatgcgac cggccatcga cgcggtgcgc
     2281 gagaccggtc gagctgtcgc ggaggtggcg ctgtgctaca ccgccgacct gtgtaatccg
     2341 gcggagaagt tgtacacgct ggactactac ctacggctcg ctgagcagat tgtggcggct
     2401 ggcgcgcacg tgctggccat caaggacatg gcgggcttgc tgcggcctcc ggcggcccgg
     2461 accctcgtga ccgccctgcg cagccggttt gacctcccgg tacacctgca tactcacgac
     2521 acccccggtg gccagctcgc cgcccttctc accgcgatcg acgccggagt ggacgcggtg
     2581 gacgccgctg cggcctctat ggcaggcacg acctcgcagc cctcgctgtc cgcgctggtc
     2641 gcagccactg agcacacgaa gcgcgagacc gggcttgatc tgcaggcggt ctgtgacctg
     2701 gagccctact gggagttggt gcgcaaggtc tacgcgccct ttgagtccgg cttggcctcg
     2761 ccgaccgggc gggtgtacca ccatgagatt cccggcgggc agctgtccaa cctgcgccag
     2821 caggcagtgg cgctcggcct ggcggatcgc ttcgagcaga ttgaagaggc ctatgcggcc
     2881 gccgaccgga tgctgggtcg tctggtcaaa gtgaccccgt cctccaaggt cgtcggggat
     2941 ctggcgttgc atctggtcgg ggccggcgtc gagcctgagg agttcgaggc cgaccccgca
     3001 cgcttcgaca ttcccgactc ggtgatcggt ttcctgcatg gcgagctcgg tgttcccccc
     3061 ggggggtggc ccgaacccct gcgcagcaag gctctgcagg gccgcagccc tccgcgggcg
     3121 atggcggaac tgtccgcgca agaccggcag gggctcaaag acgaccggac gcggaccctg
     3181 aaccggctgc tgttccccgc tccgaccgca gagttcgagc agcgtcgcga gacttacggg
     3241 gacacctcgg tgctgcccag caaggaattc ttttatgggc tgcgtcccgg cgaagagtat
     3301 gcggtggatc tgtatccagg agtgcgcttg ctgatccagc tgcaggcgat cggcgacgtt
     3361 gatgaacgcg gcatgcgcac cgtgctgtgc acgctcaacg gccagatgcg accgctgcag
     3421 gtccgggacc gctccgtcgc ctccaagatc cccgtcgcgg agaaggcgga ccgagccaac
     3481 ggcaaccacg tcgcagcgcc gttcgccgga gtggtcaccc ttcaggtgtc cgaaggagac
     3541 accgtctcgg ccggtcagac agtggccacc atcgaggcga tgaagatgga agccggcatc
     3601 accgcttcca agcccggccg ggttgcccgc ctggcaatca aatcagtcca gcaagtggag
     3661 ggcggtgacc tgatcttaga gctgcggtct ccttgactgc tgctgcgggc gctctcagtg
     3721 cgccgaccgg cgcgggatca ccggccggtc ggattggtgg ggtgagtctg ccaggaggtg
     3781 gttgagcggc gcatcatggt caccatggtg cggatcgtgg cgggagtagc gggagggcgg
     3841 cggctggtgg tgccaccgca cggcacccgg ccgacctcgg accgggtccg ggaagctgtg
     3901 ttcagcgcgt tgcaggctcg ccgggacctt gaaggcgccc aagttcttga tctctacgcg
     3961 ggatcggggg cgctcggatt ggaggcgctg tcgcgtgggg cggtgcacgt ccggttcgtg
     4021 gaatccgatc ggcgtgctgc cgccgtgctg cgacgcaatg tcgaggcgct cggactacct
     4081 ggggcacagg tgagcaccgc cgacgtaccc gtcgtgttgc gcggcggttc cgatcggcgc
     4141 tacgacgtgg tgctcgccga cccaccctat gcgctcgatg acggtgctct gaccgaagtg
     4201 ttgagcgccc tggccagggg cggctggctg gcaccgcaag cgctgatagt ggtggagcgg
     4261 gcaatccggg catttccgcc cacctggccg gcgggtgtgt ttgcgctcac gaataggcgc
     4321 tatggcgata ccgttgtgta ctacggttgc gcgccatgag acgtgcggtg tgtcccggtt
     4381 cttatgaccc cgcaaccaat ggtcacctcg acatcatcga gcgggctgca aggcaattcg
     4441 atgaggtcgt ggttgctgtc ttggtcaaca aggctaaaag ctgcctgttc gaggtctccg
     4501 accgtatggc gatgctgaaa gagatcaccg gacacctggc aaatgtccgc atcgattcct
     4561 ggcacgggct gctcgtggat tactgcaccg ccaacggaat cgcgacgatc gtgaagggcc
     4621 tgcgcgcggt cagcgatttc gattatgaat tgcagatggc ccagctgaac taccagctct
     4681 ccggcgtgga cacgatgttc ttgccgagca aaccgcacta cagctacctg tccagctcgg
     4741 tggtcaagga agtcgccgcc tacggtggtg atgtcggcca cctgctgccg gccacggtgc
     4801 accaacgcct gatcaatcgg ctcggcgaag ggtcctgacg gacggacacg ccgactaccg
     4861 gcggctcccg catctgaacg agccgaccag tcaaaatgtc gctatggatg gtgatcggcc
     4921 gcaggaccag gtgtatcgag ttttcgaggc cctcgatgag ctcgtgacca ccgtggagga
     4981 ggcccgtggc gtaccgatga cctccagctg cgttgtgccc cgcggggatg tactggaact
     5041 gctcgacgac atccgcgatg cgattcccgc ggagttcgac gacgctcagg acgtcctgga
     5101 ccatcggagc gaattggttg aaactgcgcg ccaggaggcg caacggcaac gcgaagaggc
     5161 ccggaacgaa gctgatcggg cggtcaccga ggctcgcgac gaggccgcgc gcctgcttgc
     5221 cggggcccgt gctcgcgccg aatcgatggt cgccgatgcg caagccgagg cggcccgcat
     5281 tgcggacact gcgcaccgcg agtatcaaga gctcaccggg cgcgctgaga ccgaggccga
     5341 acggatgacc gcggcgggca gggcgtccta tgagcgggcc gtggccgatg gccgggcaga
     5401 gcagtcccgg ctggtcgagc agactcaggt gatgcaggca gcccgtgctg aggccactcg
     5461 aatccacgat gaggcgcgca ccgaggcgca ccggctgcgt tcggaatgtg atgcctacgt
     5521 cgaaagcact ctcggggagt tcgaggacct gctcaacacc accttgcgcg ccatcgggcg
     5581 cggccgagcc cagcacaacg ggccggtgcc tgccggagtc gccgggtacc gcagctgaat
     5641 cccatcgttg actatgcccg tacggtcttc ttctgaccca ggttctaccc tgcacatgat
     5701 gccgcgtagg accgtttccc cccgacctga tccgtcttca ccttgggtga tcgatactcg
     5761 agacctgggc agacgtcccg gagcgatgcg ccgctaccat cgggtcgtcc agttgacggc
     5821 gggactggga ctggacgtga tcggaattcc cgctggcgag gaagtagttc tggacgtgcg
     5881 gctggagtcg gtaatggagg gcgtgctggt atccggcacg gctgttgcga cgatcaccgg
     5941 gcagtgcgcc cgctgcctgg acctgctgac caaccggctg gagatcgagc tgaccgagct
     6001 gttcgcctac ccggataccg cgactgaggc caccaccgat cccgacgagg tgagtcgggt
     6061 cgtggatggc ctgctcgacc tcgagccggt ggttcgagac gcggtgctgc tggcgctgcc
     6121 gcaggcgccg ctctgcaccg aggactgccc gggcctctgc ccggaatgcg gcggtaagcg
     6181 ggcggaactc gggacggatc accggcatga gaagatagat ccgcgctggg cggcactaaa
     6241 gccgcggttg cgcggaagcg aagaggagaa cgagtaacgt ggccgtcccc aagcgcagga
     6301 tgtcgcggtc gaacacccgc tcacggcggg ctcagtggaa aaccaccgcg cccactctcg
     6361 cggagtgctc caaccgggcc tgccggcgac cgaagccacc gcatgtgctg tgcccgtact
     6421 gcggaagata tgacggccgc caggtcagtc ggccggcctg attccgcgac gggacctcac
     6481 ccttggggaa tcggcctccg cggcgtcacc cagctgatct gactccgctg cttaccgctc
     6541 tcgacgttga aatcgacgcc gagctgttga cgcttgctct cacccaccgc tcgtatgcct
     6601 acgaaagtgg tggtatcgag ccgaacgagc gcttggagtt tctaggcgac gccgtgctcg
     6661 gcgtggtcgt caccgatcac ctgttccgca ctcaccccga cctgcccgag ggacagctcg
     6721 ccaagctgcg cgcgagcgtg gtgaacatgc atgcgctggc cggtgtggct cgcggactcg
     6781 gtccgggcgg cctgggcgaa tacctgctgc tgggccgggg cgaggagctc accgggggtc
     6841 ggcacaaatc cagcatcctg gccgacacca ccgaggcgct gatcggggcg gtgtacctac
     6901 agcacggcat cgacgtcgcc cgcaccatgg tgcaccggtt attcgatccg ctgctggtgg
     6961 tggctccgtt gctgggtgca ggcctggatt ggaaaaccag cctccaagaa ctcaccgcca
     7021 gccgcgagct gggcgtacca gagtaccgga tcaccgaggt cgggcccgat catctcaagg
     7081 agttcaccgc gaccgccgtg atagccggtg tggagcgggg aaccggccag ggccggacca
     7141 agaaggaagc cgagcaacgg gccgcagaga ccgcctggcg gtcgctgtcc gagctggcca
     7201 gcgggagcgc cccgccggcg gggtagccca gcatgccgga gctgcccgag gtcgaggtcg
     7261 tccggcgcgg cctagccgaa cacgtcgctg ggcggaccgt gtgcggtgtc gaggtgcgcc
     7321 acccccgttc agtacgccgc caccttgctg gcgagctgga cttcacagcc cggctccgcg
     7381 gccggcagat tcgagccgtc cgacgccgcg ggaagtacct ttggctggat ctgggtgacg
     7441 gggacgcgtt gctcgcccac ctcgggatga gtgggcagat gcgcatccag catcccggtg
     7501 ccattgacga aacgcacctt cgggtgcgga ttcaatttgt cgacggtgat cctgagctgc
     7561 gcttcatcga ccagcgaaca ttcggcggcc tctcgataga ggaggtgatc gacggtctgc
     7621 ccatcccggt agcacacatc gcgcgagatc cgttggaccc gttattcgag cttgatgagg
     7681 tgatcgccgg tattcaggcg cggcggaccg gcctcaaacg cgcgctgctg gatcagactc
     7741 tgatatcggg gatcggcaat atctacgccg acgaggcgct ctggcgagct cagctgcacg
     7801 gagcgcagcc caccgcgacg ctgacccgcg cccaaggacg taccgtgctg agtgccgtca
     7861 ccgaggtgat gaccgaggca ctggccgctg gtggtacctc attcgacgcg ctctacgtca
     7921 acatcaacgg cgcctccggg tattttgacc gctcgctggc cgcctacggg caggccggcc
     7981 gaccctgccc acgctgcggc atcgcgatcc agcgggagcc gttcatgaac cgctcgtcct
     8041 tcagctgtcc ccgctgccag cc
//
LOCUS       DASVXZ010000390         5498 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1455247, whole genome shotgun sequence.
ACCESSION   DASVXZ010000390 DASVXZ010000000
VERSION     DASVXZ010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5498
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1455247"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..600
                     /locus_tag="VF788_08075"
     CDS             148..600
                     /locus_tag="VF788_08075"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8934135.1"
                     /translation="MSGHGRRVGRSWGPVPARGPGRHRSGSGGQASSHLIGWWLPRRR
                     PAADHLPAYQALVHKPTSSSFPSSHAATAAAFTTAIAWESLTAGLMVVPLAVAVAHSQ
                     LRTRAHWPSDVVAGSLWGITVGIATRRLLRLPAAADSIHIARFPAELL"
     gene            653..886
                     /locus_tag="VF788_08080"
     CDS             653..886
                     /locus_tag="VF788_08080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934136.1"
                     /translation="MNAAAAHSGELQREALQPGREEERRTQWTDREAGQLEDQGDEEK
                     DDDDGSMVVSLSVRQWTDRHFRLQVICFCPTGL"
     gene            complement(1055..1345)
                     /locus_tag="VF788_08085"
     CDS             complement(1055..1345)
                     /locus_tag="VF788_08085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934137.1"
                     /translation="MQQVLEGTEALQDRAGEVALQAEWWVQQAPEKLPAAGGGAHRVA
                     DSRGEATAAARCGVAVAVLLVLRACSVEQVRPCPWRCLGPLGVLISLADRSR"
     gene            complement(1682..1942)
                     /locus_tag="VF788_08090"
     CDS             complement(1682..1942)
                     /locus_tag="VF788_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4235 domain-containing protein"
                     /protein_id="HEX8934138.1"
                     /translation="MKMLYRSLSLVVSVLGGILAGAVFKKVWAVVSGEEEAPEATSPD
                     YSTKEVLIAAAVQGAIFAVVKAAVDRAGAKGIKKITGTDPGR"
     gene            complement(1939..2337)
                     /locus_tag="VF788_08095"
     CDS             complement(1939..2337)
                     /locus_tag="VF788_08095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934139.1"
                     /translation="MGLQFPVAGMSRSMSEAGGLSNKAQELKAQATQKAREVRAQAIA
                     RAPQLTGAAAQKTQRVVQDKPGAAVGGALAVLGLLILRRRQRRREKDKKAQQVRGRSR
                     TSRARWWARVLAVLGFVIRRRRRRGRQKDS"
     gene            complement(2780..3235)
                     /locus_tag="VF788_08100"
     CDS             complement(2780..3235)
                     /locus_tag="VF788_08100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934140.1"
                     /translation="MGQILDDPSIRRVFTQRVRDQFVPLVNKAAYQFLNEQVNERLKN
                     ALGGPGSYVSVSNGTAEPAEQTEPTPDRPELTREANPGARNEDTVTTEEELEGYRIVR
                     AIVCSEVPIARIVARDTKTYFGILLDDNNRKSIARLWFNPLREIHRNFR"
     gene            4279..4593
                     /locus_tag="VF788_08105"
     CDS             4279..4593
                     /locus_tag="VF788_08105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934141.1"
                     /translation="MRHARVRIAFYGVGVEHDLGSVRAAGLVEEVASLRTLTARLQAE
                     NARLLRLLELTPEQAAPPGPVQTGVFEGRPGPVDRRSPPEVKVDFFGQLFAARRDVYA
                     LR"
     gene            4633..5340
                     /locus_tag="VF788_08110"
     CDS             4633..5340
                     /locus_tag="VF788_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934142.1"
                     /translation="MRNGWRKGLRHEERDYLPLTRDVIRAHLSGETHIGLYPLLDGDL
                     CSWLAADFDGQAAMLDALAYLKAARTWSVPAALEVSRSGVGAHAWVFFTAPVPAEAAR
                     RLGTALLREAMALRGHMNLASYDRLFPAQDMLPSGGVGNLIAAPLHGKARQDGVTVFL
                     DLATMEPHDDQWSFLSSLGRMSPGEVSRIARKAGRVVVGRSWTGSAHRSPLGSAPRHR
                     RSCMPVWRPGSGWSRAS"
BASE COUNT          942 a         1705 c         1774 g         1077 t
ORIGIN      
        1 gagtgtcatg cgtgaatggt taggtcgcgc ggtagagcaa ctgaaccgct ggaaatctca
       61 cgcggtagcg ccgagcacgg tgctgcctcc tgatgaacct gcccctgagc tgacggggct
      121 gacaacagtc gcgcgcgatg gactgttgtg agtgggcatg gccgccgtgt tggccgttcg
      181 tgggggccgg ttccagcgcg cggcccggga cggcatcgta gcggtagcgg tggccaggcc
      241 agctcccatc tgatcgggtg gtggttaccg agacggcgtc ccgcggctga ccatctaccg
      301 gcgtatcagg cgttggtgca taagccgacg tcgtcgtcgt ttccttcgtc tcacgcggcc
      361 acggcggcag catttaccac cgcgatagcg tgggaaagcc tcactgccgg gttgatggtg
      421 gtccccttgg cggtggcagt ggctcattcc cagctccgta ccagggcgca ctggcccagc
      481 gacgtggtag ctggctcact gtgggggatt accgtcggta tagccacccg gcgcctgctc
      541 cggctaccgg ccgccgccga cagcatccat atcgcgcggt ttccggcgga attactgtag
      601 tactgcaacg ccattcggcg tggcgtgaca gggctgacgg accaccgcgt ctttgaatgc
      661 ggctgcggcc cactccggcg aactgcagcg cgaggcgctg cagcccggcc gtgaggaaga
      721 aaggcgcacc caatggaccg atcgcgaggc tggccagctc gaagatcagg gcgatgagga
      781 aaaggacgac gacgacggca gcatggtggt ctccttatcg gtccggcagt ggacagacag
      841 gcactttcgg ctgcaagtga tctgtttctg tcctaccggc ctctgacgcg gtggtgcggt
      901 gggcgcaccg ctacatgtgc gatcgacaat ccgccagctt gtcgatattg acacccatcc
      961 cggccacacg cacgctgacc gccggcgacg tcggagcggt gggccgccac catgaaaacg
     1021 acatccccta ggaggcgaca cggtgaagaa gggcctaccg cgatcggtca gcgaggctga
     1081 tcagcacacc cagtggccct aaacaacgcc atgggcatgg tctcacctgt tctacggagc
     1141 aggcgcgcag cactaacagc accgccaccg cgacgccgca gcgggcagcg gccgttgcct
     1201 cgccccggct atcagcaact cgatgtgctc cgccaccggc ggcggggagt ttctccggtg
     1261 cctgctgaac ccaccactca gcttgcaggg ccacctcgcc tgccctgtct tggagtgctt
     1321 cggtgccctc cagtacctgc tgcatggcct cttcgccgca ggtcaatcag cgagatggtc
     1381 cttacgaatt cccgcaccgt gcgcttaagc accgcccacc acgaacgctt gggccactca
     1441 gtggctcgct acccgcagca cgtccggaaa ctactctcca tgctcatggg tgtgctgtcc
     1501 tacccttccc accgccctct atgccagcat cggtccattg tgctcggagt acccgggcgc
     1561 tgaggtgggt accgcgaatt gcggggccac ccgctccaag cacgatcgca cccgaggcaa
     1621 ggcgtccaac gcggcaatgc gattggacat ctcctgtggg tagtcgacag gcaagcgtga
     1681 tctacctccc gggatcggtg ccagtgatct tcttgatgcc cttggcgccg gcccggtcca
     1741 ctgcagcctt caccacggcg aagatcgcgc cctggaccgc ggcggcaatc aacacctcct
     1801 tggtgctgta gtccggtgag gtggcctccg gagcctcttc ctccccggaa accaccgccc
     1861 acaccttctt gaagaccgcg ccggccagga tcccgccaag cacgctgacg accagactca
     1921 acgacctgta gagcatcttc atgaatcctt ctggcgcccg cgtcgacggc ggcggcgaat
     1981 cacaaatccc agcacggcta gcacccgcgc ccaccaccga gcccgacttg tcctggaacg
     2041 cccgcggacc tgctgggcct tcttatcctt ctctcgccgg cgttggcgac ggcgcaggat
     2101 cagcaacccc aacacggcca gcgccccgcc cactgcggca cccggcttgt cctggaccac
     2161 ccgctgagtt ttctgcgccg ctgcaccggt cagctgcggg gccctcgcga tcgcttgggc
     2221 acgcacctct cgggccttct gagtggcctg tgccttgagt tcttgggctt tgttactcag
     2281 cccacccgcc tcgctcatgc tgcgcgacat acccgcaacg gggaactgta aacccaccag
     2341 gggtgatctc gtcggctcgg cagcctggcc cacactgacc tactcgtcaa aggactccac
     2401 caccagattg aggttatcaa tcgatgcttt ttgggcgctg ggccggtcaa tggggatcac
     2461 tcctgaccac agctgaccgc aggcaaggcc tagaccaggg tggcattagg ggtcctcaag
     2521 ctctcacacg gcctgcaggg tccctgtatg cgttgagaca cgtcgaaggt ccgtgggtag
     2581 gtctgtgagc tggtctagat tcgcagaatg ccgctggaac agattctaat cctagccgac
     2641 ttccgtcgcc gtcaacccga gaggagcgtt cgcgagcacg gaattatcta gatacctcga
     2701 aaccgtttta cgcaattgat ctgcatgttg gtagatggct tcgacgtcat tgatgatgat
     2761 gcgggtctca accttgtttt catcgaaaat tccgatgtat ttctctgagc gggttgaacc
     2821 atagtcgagc gattgactta cggttgttgt cgtcgagcag gatgccgaag taggtcttgg
     2881 tgtctcgggc tacaatcctc gcgattggca cctcgctgca gacgatggct cgcacgatcc
     2941 gatagccctc cagttcctct tcggtggtga cggtatcctc gtttcgggcg ccaggattgg
     3001 cctcccgcgt gagctccggt cggtcaggtg tcggttcggt ttgctccgca ggctcagcag
     3061 tgccgttgga gacgctgacg taggagccgg gcccaccaag ggcgttcttc agtcgttcat
     3121 taacctgctc gtttaagaat tgatacgcgg ctttgttcac cagtggaaca aactggtcgc
     3181 gtacacgttg agtgaagacc cttcgtatac tcgggtcgtc aagaatctga cccattcatc
     3241 ctcgggctct ttgaactggg acagcgagga ttcgcttgag ttgtccgatg tacttcagct
     3301 cacctgcagc actgatcacc gagtcgagat cgaaggactc cttggtcagc ttggcaagct
     3361 ccgaaagaag tgtttcgtcg atgtctgaga aatccagtac taggaagggt ttagagtcca
     3421 tccgattggg ggcgtccaaa tcagtgtaaa actcgtagac ttctccgttg gtcaggatcg
     3481 cgattctggc attggtgacg atgaagtacc ggaagagttg agaagcgtgt tcgatgcgga
     3541 gtggatcgag ggtgtcctgg acgcgagttt gcggccggcc cggtcaaggg cacccgcgtc
     3601 tgtcgtcacg cgtcccccaa ccgcacggcg tggtcgtcac cgcctgagac gatcatgtgc
     3661 cggagacgat caggtcccag cccctgactc gaccgccaca gcagtcaccg ggccggcgtc
     3721 tcgccgatgc agctttgctg cggcgcggca cttgattgat ctgacacggt ctgacgggca
     3781 tcgtcaactt aggcagggcc tggtgactgg gatgatcggc ggatcgtctg cgtagagggt
     3841 cgagggggct gggcttgtgg gtaccggtgc gccgtcgtac agagggttcc gctatccggt
     3901 ggagatcatc agccatgggg ctcggaaact cggtgcagct tcctggtgtg tgttgttcct
     3961 acagtgcctg ggcgtggatc atcgtcggca gaagagtacg ttcctgtcgt tctaagcggc
     4021 cctaacgcat cagcatatga accgtgtggt gctggtcgaa ggcccggaga tcacgattgg
     4081 cctggtcggt acacggcaag tggtgaaatg gcacgggtga tgaacgcggt ttcacacgcc
     4141 tgctgtcgac accggcaaag gccatcggat gagccgtcag tgtgtcgcgt atgggagttc
     4201 cagctggacg acaccgcacc catcatgttg agatgagcgt cggcgcacgg gggtctcgaa
     4261 tttcgctggc gttgtgcgat gaggcatgct cgcgtgcgta tcgcgttcta cggtgtgggg
     4321 gtggagcacg atcttgggtc ggtgagggca gccgggcttg tcgaggaggt ggcgagtctt
     4381 cggacgctga ccgcgcggtt gcaggcagag aacgcacgct tgttgcgcct gctggagttg
     4441 acaccggagc aggcggcccc gcccggcccg gtgcagacgg gtgtcttcga gggccgtccc
     4501 ggcccggttg atcggcgatc accgccggag gtgaaggtcg atttcttcgg acagttgttc
     4561 gctgcccgca gggatgtcta cgccctccgg tgagagaacg cgcgcaccgg caaggctggt
     4621 tggctgcctg cggtgcggaa cgggtggcgt aagggcctac ggcacgagga gcgggattac
     4681 ctgccgctga ccagggacgt gattcgcgcg catctgtccg gtgagacgca cattgggttg
     4741 tatccgttgt tggacggtga tctgtgcagc tggctggcgg ccgacttcga cgggcaggcg
     4801 gccatgctgg acgcactggc gtatctgaag gccgcccgga cgtggtcggt ccccgcagca
     4861 ttggaagtgt cacggtcggg ggtcggcgcg cacgcgtggg tgttcttcac cgcgcccgtg
     4921 ccagcggagg ccgcccggcg gctcggcacc gcgttgctgc gggaggcgat ggcactgcgc
     4981 gggcacatga acctggcgag ctatgaccgc ctgttcccgg cccaggacat gctgccatcc
     5041 ggcggggtgg ggaatctgat cgccgcgccg ctacacggca aggcccgtca ggacggggtg
     5101 acggtgttcc tcgacctggc cacgatggaa cctcacgacg accagtggtc gttcctgtcc
     5161 tcgctgggcc ggatgagccc cggcgaggtc agccggatcg cgcgcaaggc cggacgggtc
     5221 gtcgtggggc gcagctggac cggctcggca caccggtctc cactcggatc cgcgccacgc
     5281 caccgccgat cctgcatgcc cgtctggcgg ccgggatccg gttggagtcg agcgagctga
     5341 ccccagcgtt gcacgcgacc ttgaagcaca tggcgtccat gccgaacccg atcttctatg
     5401 aacgccagcg gctgcgcatg tccacctggg acacaccacg gtttctgcgc agctacgacg
     5461 aaaccctcga tggcgggctc atcctgccgc gcggcttg
//
LOCUS       DASVXZ010000391         5108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_737549, whole genome shotgun sequence.
ACCESSION   DASVXZ010000391 DASVXZ010000000
VERSION     DASVXZ010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5108
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_737549"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            74..1006
                     /locus_tag="VF788_08115"
     CDS             74..1006
                     /locus_tag="VF788_08115"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8934143.1"
                     /translation="MVGTSGCGRGLAHHGLLHPPSADLTATLAPLITERLTRGETVLA
                     ALPPSTAAELPARLPTLGGLHITDSSELYRHPGRVLAYYRSWIANTISESRSVAIVAV
                     PHPDVDDQHRAALWMHIDAATTVALAEYDLTLICAYPDHPATADAVRRVHPSLFNGTI
                     VPNPDHLPAEQFVTRYPLPPPAELGEPDLTHVIDHLTQLSWLRRIVSAHATRAGLPAA
                     RGDDVVLAVTEIASNAIEHGAPPATVRLWTTPTSMICQITDAGEYTQPLAGLLPPLST
                     QYRGRGLWMVHQLCDQAYLWQHPTTIRVQMDRNS"
     gene            complement(1211..1780)
                     /locus_tag="VF788_08120"
     CDS             complement(1211..1780)
                     /locus_tag="VF788_08120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934144.1"
                     /translation="MKGVLAGVLLGAAAGAAGTTMLNAVTYLDMVVRGRPASNTPEDT
                     VEALAKKAHISIPGYGEDRTNRVTGLGSLTGISAGVGTGALLGLARAAGYRPGKVVSG
                     LVASVVALLGTNGPMTVLGVTDPRTWEAKDWVADVIPHLAYGFLTAVVLDYLDCGSGA
                     WPGSEEPCNPIGSRSEAATSFTGRYTLGG"
     gene            1974..3347
                     /gene="radA"
                     /locus_tag="VF788_08125"
     CDS             1974..3347
                     /gene="radA"
                     /locus_tag="VF788_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEX8934145.1"
                     /translation="MVKSPGNLRATHHCAECGHEVTKWVGRCPECHCWGSVVAAGRRP
                     VAAVAVGAPTAPARPISQIDLQSAQATPTGVAELDRVLGGGLVPGAVVLLAGEPGVGK
                     STLLLEVAHRCAMAGRRALYVTGEESAGQVRLRAQRTGALHDELFLAAESDLPAVLGH
                     LDVVEPGLLIVDSVQTMCCPGVEGSAGGVSQVRAVASALISTAKQRGLPVVLVGHVTK
                     DGAVAGPRVLEHLVDVVLSFDGDRHSTLRMVRGIKNRFGAADEVGCFELTDGGIVGLP
                     DPSGLFLSHRDGAVAGTAVTVVVEGKRPLLGEVQALVAESALANPRRAVSGLDSSRVA
                     MILAVLERRGRVKLAGSDVYTATVGGMRVVEPAADLAVALAVASAADDLLLPPHTVAI
                     GEVGLAGEVRQVTGLRRRLAEAARLGFRHALVPPDHIRERDTAAPTGMRLHVVPDLSG
                     ALHWLRP"
     gene            complement(3437..3628)
                     /locus_tag="VF788_08130"
     CDS             complement(3437..3628)
                     /locus_tag="VF788_08130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934146.1"
                     /translation="MGGVDVAGDGAQDARSSGGAWGWLAVQLVAMPAAVLVLVAIIAW
                     ARRRSVTRLIALIRHHTEG"
     gene            4109..>5108
                     /locus_tag="VF788_08135"
     CDS             4109..>5108
                     /locus_tag="VF788_08135"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8934147.1"
                     /translation="MTVRKEQGRASPGMAERGHALAAVDRLLANACEGRGGALFVIGA
                     AGLGKTTLLEHAVTVAKPRFVVGVGRGDQVEALLPFGLISQALDQLIGEESPGNGIAR
                     NHNIRDISAQAVFYDIFRGVRDAAVRPLLVALDDVHWSDPDSLTVLHLMCRRLASLPV
                     ALVATARPWPAAALTSAQDLATQELAEIESLTPLSTAAARELLCSRVKARVPTDVVNQ
                     AIDLCGGNPLLLEQVGFELRQSGMLVEGPVWFSRFVGVGEAGRRYLQAASVLGTRFRV
                     AIASEVAGLSIAEAATELDGLFRGEVLCESNTGWARFSHALIRQSVYEDTAPPVRRD"
BASE COUNT          860 a         1628 c         1705 g          915 t
ORIGIN      
        1 tttgggacgc cgcacaatcg ggaaatccca ccaaacgagg ttgcaccaca gtaggcgaag
       61 agaggtgtgg cggatggtgg gcacctcggg ctgcggccgg gggttagctc atcacgggtt
      121 gctccacccc ccatcagcag acctgaccgc caccctcgcg ccgctgatca cggagcggct
      181 cacccggggt gagacggttc tagccgcgct gcctcccagc accgccgcag aactaccggc
      241 gcgcctgccc accctgggcg ggttgcacat caccgattcg agcgagctct accgccatcc
      301 cggccgagtg ctggcgtact accggtcctg gatcgccaac acgatatccg agagtcgctc
      361 agtcgccatc gtcgcagttc cccacccgga cgtcgacgat cagcaccgtg cggcgctatg
      421 gatgcacatt gatgccgcga ccaccgtggc tcttgccgag tacgacctca ccttgatctg
      481 cgcctacccc gaccatcccg ccactgcaga cgctgtccgc cgggtccacc caagtctgtt
      541 caacgggacg atcgttccca atccagatca cctaccagcg gaacagttcg tgactcgcta
      601 tcccttgccg ccgccggccg agttgggcga accagacctc acccacgtca tagaccatct
      661 cacgcagctg tcctggctac gccggatcgt gtccgctcac gccacccgcg caggactgcc
      721 cgccgcccgg ggtgacgatg tcgtgttggc cgttaccgag atcgcaagca acgccatcga
      781 acacggcgca ccgcctgcta cggtccgcct gtggacgacc ccgacctcga tgatctgtca
      841 gatcaccgac gccggcgaat acactcagcc actggccggg ctgttgcccc cgctcagcac
      901 ccagtaccgg ggccgtggcc tgtggatggt ccaccagctc tgcgaccagg cctatttgtg
      961 gcagcatccc accaccatcc gagtgcagat ggatcgaaat tcctgaatat ggggttggcc
     1021 agcggagcga aggaatacgg tcaatccggc tgcgctgaga aactccagcc cggacaggtc
     1081 cagaagacct gacggtgacc gtcacagctg agccggtcca gcagctgttc ccgaaatctg
     1141 ggggagaccc gggccgctgc tgagcggaat accaccgctg tccgggcatg gctatcaaga
     1201 tggctgacgg ctaaccacct aaagtgtatc ggccagtgaa ggaggtcgcg gcttctgacc
     1261 gggaaccgat ggggttgcat ggctcctccg agccaggcca agcgcccgag ccgcagtcta
     1321 gataatcgag caccactgcg gtgaggaagc cataggcgag gtgtggaatg acatcggcca
     1381 cccagtcttt ggcctcccag gtgcgggggt cggtgacgcc gagcacggtc atgggcccat
     1441 tggtgccgag cagcgcaaca acgctcgcga cgagaccgct gactaccttc ccgggtcggt
     1501 aaccggcggc gcgggccagc cccaacagcg ccccggtgcc gaccccagcg gagataccgg
     1561 tcagcgagcc gagcccggtg acccggttcg tccggtcctc tccataccca gggatcgaga
     1621 tgtgggcttt cttcgcgagt gcttcaacgg tgtcttctgg agtgttgctg gcgggtcggc
     1681 cgcggaccac catgtccaga taggtcacgg cgttcagcat ggtggtgccc gcggctccgg
     1741 ccgcagcacc gaggagcacc cccgcaagca cgcccttcat gcggaaacct ccaacagcgc
     1801 ttgtccctcc tgcgtagcaa tgtccgcttc acgagacatc ggcaccgctt cctctccttg
     1861 aacccggccg gttggctcga ccgcccgttc agacgtagat actcccgcat cacagcgagt
     1921 acacccagcg ttcctcaaca ccgtgtcggg ccgggcagat aacgtccgcg gccatggtga
     1981 aatcccccgg gaacctgcgc gccacgcacc actgcgccga gtgcggccat gaagtgacca
     2041 agtgggtggg ccgctgcccg gagtgccact gctggggcag cgtggtggcg gccggtcggc
     2101 gaccggtcgc ggcggtcgcc gttggggcac cgacggctcc ggcccgcccg atctcccaga
     2161 tcgatctgca gtccgcacag gccactccca ccggagtcgc cgaactcgac cgggtgctcg
     2221 gaggcggctt ggtgcccggc gcggtggtgc tgctggccgg cgagccgggg gtgggtaaat
     2281 ccaccctgct cttggaggtc gcccaccgct gcgctatggc cggacgtcgc gcgctttacg
     2341 tgacgggtga ggagtccgcc ggtcaggtcc ggttgcgggc gcagcgcacc ggtgcactgc
     2401 acgatgagct gttcctggcc gcggaatcgg acttgccggc ggtgctcggg cacctcgacg
     2461 ttgtcgagcc ggggctgctg atcgtcgatt cggtacagac gatgtgctgt cccggtgtcg
     2521 agggcagcgc agggggggta tcccaggtcc gtgcggtggc cagtgcgctg atcagcaccg
     2581 cgaagcagcg cgggctgccg gtggtactgg tgggccacgt caccaaggac ggcgcggtcg
     2641 cgggcccgcg ggtactggag cacctggtgg acgtggtgct gagctttgat ggcgaccggc
     2701 attccacgct gcggatggtc cgcgggatca agaaccggtt cggggccgcc gacgaggtcg
     2761 gctgcttcga actcaccgat ggtggcatcg tcggcttgcc cgacccgtcg gggctctttc
     2821 tcagccaccg tgacggtgcg gtagctggga cggcggtgac ggtggtggtg gagggcaagc
     2881 ggccgttgct gggggaagtc caggcattgg tcgccgagtc cgcactggcc aacccacggc
     2941 gcgcggtgag cggcctggac tcatccagag tggcgatgat cctggcagtc ctggagcgac
     3001 gcggccgggt gaagttggca ggatcagatg tgtacaccgc cacggtaggt gggatgcggg
     3061 tggtggaacc ggcggccgat ctcgccgtcg cgctggccgt cgcatcagcc gccgatgacc
     3121 tcctgttacc cccgcacacg gtggcgatcg gggaggtcgg cctggccggc gaggtccggc
     3181 aggtcacggg gcttcggcgg cgcttggccg aggccgctcg gctgggtttc cggcacgcac
     3241 tcgtgccacc cgaccacatc cgggagcgcg acaccgccgc acccaccggg atgcgcctgc
     3301 acgttgtgcc cgatctcagc ggtgcgctgc actggttgcg tccctgaatc gaaaccgctc
     3361 gaaaccgacc tcagtcggag tgtcgtgcgg gctacccgtc cacgaggaac cggtggcccg
     3421 cacgggttct ggcccgctac ccctcggtgt ggtggcgaat gagcgcgatg agtctggtaa
     3481 cgctgcgtcg tcgagcccag gcgatgatcg caactagtac caacacggcg gccggcatgg
     3541 ccaccagctg caccgccaac caaccccagg ccccacccga gctccgagcg tcctgggcac
     3601 catcacccgc cacgtcgacg ccacccatgc tcgcatcccc ggccgcctga aaacttgaca
     3661 caaacttgaa gaacccaaga ccgaagatcg ctaaacgatc ggtgtatgcg ttctggtccc
     3721 cctgctcgcc cagaagctac gcggcaggcc ttgcgatgcc cggcttgtga cggtctccga
     3781 ggcgcctggg gaaccttctt cacactctgg tgcgtggcga cgagcctttc ggaccccgcg
     3841 tgccctggtc agtgacctga tcgccgaggt cgtcacgcga tcgaaacaac cctcacgtat
     3901 ttatcagctg ccgctcgtcc tccctctaag tggttgcggg ccggtgacat acatccggaa
     3961 actcacgaga atatcgaggt gtgatcagca gtcgaaggaa ttgggcaggg cgagctggaa
     4021 gaaggtgttt ggcgtgatga gtggatgagt gggtgacaaa ccataactaa atcaaattcg
     4081 tgatgggact tcagagggag gattggtaat gaccgtcaga aaagagcagg ggcgggctag
     4141 ccctgggatg gctgaacgcg gtcatgcgct ggccgcggtg gatcgactcc tcgctaatgc
     4201 atgtgagggc cggggcgggg cgctgtttgt gatcggggca gccgggttgg gtaagaccac
     4261 gctacttgag catgcggtta ccgtggcgaa gccgcggttt gtagtgggcg tcgggcgtgg
     4321 ggatcaggta gaggcgttgt tgccgttcgg tttgatcagt caagctcttg atcagcttat
     4381 cggcgaggaa tctcccggta acggcatagc ccgaaatcat aatattcgtg atatctccgc
     4441 acaggccgtt ttctatgaca tttttcgcgg tgtgcgagac gcggcagtcc gtccgctgct
     4501 ggtggctttg gatgatgtgc actggtcgga tccggactca ctgaccgtac ttcacttgat
     4561 gtgccgtcgc ctggcgtcct taccggtggc actcgtcgcc accgctcggc cgtggccggc
     4621 ggcggcattg acatcggcgc aggatctagc gactcaggag ttggccgaga ttgagtcgtt
     4681 gactccgttg agcaccgctg ccgcccggga gctgctgtgt tcccgggtga aggctcgggt
     4741 tccaacagat gtggtgaatc aggccattga tttgtgcggt ggtaacccgc tgctgttaga
     4801 acaggtcggc tttgagctcc gccaaagcgg gatgctggta gagggaccgg tgtggttttc
     4861 ccgcttcgtg ggagttggtg aggccgggcg gcgttacctg caggcggcga gtgtgctggg
     4921 tactcgcttt cgtgtcgcca ttgcctcgga ggtggccggc ctgtccatcg ccgaggccgc
     4981 taccgagctc gatggtctgt tccgcgggga ggtgctctgt gagagcaata cggggtgggc
     5041 gcggttcagc cacgcactga ttcggcaaag cgtgtatgag gatactgcgc ctccggtgcg
     5101 ccgggatt
//
LOCUS       DASVXZ010000392         3911 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_669195, whole genome shotgun sequence.
ACCESSION   DASVXZ010000392 DASVXZ010000000
VERSION     DASVXZ010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_669195"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..167)
                     /locus_tag="VF788_08140"
     CDS             complement(<1..167)
                     /locus_tag="VF788_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005443329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EsaB/YukD family protein"
                     /protein_id="HEX8934148.1"
                     /translation="MFSRVTVVAPRTRIDLALPSDVAVAHLLPMLLKMAGESTADGGS
                     SHGGWCLAKLGG"
     gene            625..>3911
                     /gene="eccCa"
                     /locus_tag="VF788_08145"
     CDS             625..>3911
                     /gene="eccCa"
                     /locus_tag="VF788_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009072354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EccCa"
                     /protein_id="HEX8934149.1"
                     /translation="MSTVQFRRLPRLAAPKMPGGEVHLEPPPEVPRVIPGNMIQKILP
                     AVMIVAVLGMVAYIFLTPGEARSNPLFLMFPIMMVVSTVGMFTGGGRGGQAKAEMNED
                     RKDYLRYLGQMRVRARESAQDQRAALEWSHPDPAALWSIAGSRRVWERRSGDQDFCHV
                     RICRGSQRLATRLVPPQTGPVDELEPITTLALRQFVRAHSIVADLPIAISIRGFAAIG
                     ISGDADAARGLARAMVAQLATFHSPDDLLIAVVTAGRAKMDWEWAKWLPHVQHRSRVD
                     GAGPVRMMGPSLARIEELLGEQLRDRPRFARNAPLPGDEPHILIVIDGGEVSGAEQII
                     LEEGLVGVALLDLSASLGALTSRRGLQLAIEGGAIGARNATGVEFFGTADALATAEAE
                     AVARVLSPFRLGTSDAPGEDHPLLHNSGLLGLLGLPEDPHAFDVAAAWRPRPLRDRLR
                     VPIGPGEFGQPVELDIKEAAQGGMGPHGLCVGATGSGKSEFLRTLVLGLIATHSSAVL
                     NLVLVDFKGGATFLGMEGAPHVSAVITNLADDLTQVTRMQDALAGEMNRRQELLRSAG
                     NFANVKDYEKARENGADLDPLPALFIVIDEFSELLAQQPEFIDLFVAIGRLGRSLQMH
                     LLLASQRLEEGKLRGLESHLSYRIGLKTFSAGESRAVLGVPDAYELPPVPGSGYLKFD
                     TASMERFKAAYVSGPYRVGRVVASANPVPVTADRRPRLFVPDYVDLPEAAEPVAHQEV
                     LAPENINEPSVLDIVVARLSGQGPPAHEVWLPPLDTSPSLDQLLPPLSVTEDRGLSPV
                     GFFGNGRLTVPVGIVDKPYEQRRDLLWADLSGAAGHAVVTGGPQSGKSTLLRSMLLSL
                     ALTHTAEEVQFFCIDFGGGTLASLDGLPHSGGVAGRLEPDIVRRILAEVTGLLATREQ
                     RFRSLGIDSMAEYRIRKQHARSSGEKDPLQEDQFGDVFLVIDGWHSFRQEFDISDLEM
                     RVVNLATQGLSYGVHVMIGATRWAEIRPALKDLLGTRFELRLGDPGESDIDRRVAVQV
                     PPGRPGRGLSRDKLHFLAALPRIDAVTSARDAGAGVADAVTHIRQAWAGRGAPRVRLL
                     PERIAYQ"
BASE COUNT          586 a         1296 c         1363 g          666 t
ORIGIN      
        1 cccccgagct tggccagaca ccagccgccg tggctgctgc caccgtctgc ggtggactca
       61 ccggccatct tcagcagcat cggcaacagg tgggccaccg caacgtccga gggcagcgcg
      121 aggtcgatac gagtgcgggg agccaccacg gtcactctgc tgaacacggt ggacggttga
      181 accgtcgatc cgggtcggga cggttgaacc gccgatccgg cactggacga tcggactgcc
      241 ggagctccgt tggcatgact tggcacccgc tgtactcctc gctcggctcg cgggccatcg
      301 gtgtctagct cgatctgcgg tggccacggg cgctgtagtt ccggggagta tccatgcgcc
      361 caacgcgggg cactccaggg ggtctgcccg cagcacatga tcgtagttgg tgtggtcggt
      421 aaccccgtca actgcgacga tcagctaaca cgagccagcg agccggcgcc gcacgctgcg
      481 gcacaacctg cggcacaacc tgggaggtat cgccaagagg cggtagccga acgaccaccg
      541 gctagtcgcg aggaaccgcc aagagcacct tctcgataag gtggcctgct gctgcgcgca
      601 gccgtctacg ggaggtgagc gggcgtgagc accgtgcagt tccggcgatt acctcggttg
      661 gctgcgccga agatgcccgg tggggaggtt catctggagc cgccgcccga ggtgcccagg
      721 gtgattcccg gcaacatgat tcagaagatc ctgccggccg taatgatcgt cgctgtgctg
      781 ggcatggtcg cctatatctt cctgaccccc ggcgaggcca ggagcaaccc gctgttcctg
      841 atgtttccga tcatgatggt ggtctcgacc gtcggcatgt tcaccggcgg cggccgcggt
      901 ggccaggcca aggccgagat gaacgaggac cgcaaggact acctgcgcta tctgggccag
      961 atgcgggtac gggcccggga atcggcccag gaccaacgcg cggcactgga gtggagccat
     1021 cccgaccccg ccgcgttgtg gtcgatcgct ggcagccggc gggtgtggga gcgccgcagc
     1081 ggtgaccagg acttctgcca cgtgcggatc tgccggggat cgcagcggct cgccacccgc
     1141 ctcgtgccgc cgcagaccgg cccggtggat gagctggagc cgatcaccac cctggcgttg
     1201 cggcagttcg tgcgggccca ctccatcgtg gcggacctgc cgattgccat ctcgattcgc
     1261 gggttcgccg cgatcgggat ctcgggcgac gcggatgctg cccgcgggct ggcgcgggcg
     1321 atggtggccc agctggccac cttccacagc cccgacgatc tgctcatcgc agtggtcacc
     1381 gccgggcggg cgaagatgga ctgggaatgg gcgaagtggc tgccgcacgt gcagcaccgc
     1441 agccgggtcg acggtgccgg tccagtgcgg atgatgggcc cttcgctggc ccgtatcgag
     1501 gaactgctcg gtgagcagct ccgggatcgt ccacgattcg cccgcaacgc cccgctgccg
     1561 ggcgatgagc cacacatcct gatcgtcatc gacggcggtg aggtcagcgg agcggagcag
     1621 atcatcctgg aggagggcct ggtcggagtc gccctgcttg atctctcggc gtcgctgggt
     1681 gccttgacca gccgccgtgg tctccagctg gcgatcgagg gcggcgctat cggcgcccgc
     1741 aacgcgaccg gtgtcgagtt cttcgggacc gccgacgcgc tcgctaccgc ggaggccgag
     1801 gccgtggccc gtgtgctatc tcctttccgc ctggggacat cggatgcccc gggtgaggat
     1861 cacccgctgc tgcacaacag cgggctgctg gggttgctcg gcctgcccga ggatccgcat
     1921 gctttcgacg ttgcggcggc ctggcgacca cgccccctcc gcgatcgatt gcgggtgccc
     1981 atcgggcccg gcgagttcgg ccaacctgtg gagttggaca tcaaggaggc cgcgcaaggt
     2041 gggatgggac cgcatggcct ctgcgtgggg gccaccgggt cggggaaatc ggagtttctg
     2101 cgcaccctcg tgctgggctt gatcgccacc cactcctcgg ctgtgctcaa tcttgtgctg
     2161 gtcgacttca agggcggggc gacgtttctg ggcatggagg gcgcaccgca cgtctccgcc
     2221 gtgatcacca acctggccga cgacctgacc caggtcaccc ggatgcagga cgcgctggcc
     2281 ggcgagatga accgtcgcca ggagctgttg cgctccgcgg ggaacttcgc caacgtcaag
     2341 gactacgaga aggcccggga gaacggcgcc gatctcgatc cgctgcccgc gctgttcatc
     2401 gtgatcgacg agttctccga attgctcgcc cagcaaccgg agttcatcga tctgttcgtg
     2461 gcgatcggtc ggttgggccg ctcgctgcag atgcatctgc tgctggcttc acagcgcctc
     2521 gaagagggca agctgcgcgg cctggaatcc cacctgtcct accggatcgg gctgaagacc
     2581 ttctccgctg gggagtcccg agcggtgctg ggtgtacctg atgcctacga gctgcccccg
     2641 gtgcccggct caggctacct gaagttcgac accgcctcca tggagcgttt caaggcggcg
     2701 tacgtctctg gtccctaccg tgtcggccgc gtcgtcgcgt ccgccaaccc ggtcccggtg
     2761 accgctgacc gccgaccgcg gctgttcgtg ccggactacg tcgacttacc cgaggcggcc
     2821 gagccggtag cccaccagga ggtgctggcg ccggagaaca tcaacgaacc cagcgtgctc
     2881 gatatcgtgg tggcccggct gtccggacag gggccgccgg cccatgaggt gtggctaccg
     2941 ccgctggaca cgtcaccgtc gctggatcag ctgttgccgc cgctgtcggt cactgaggat
     3001 cgcggcctgt ccccggtcgg gttcttcggc aacgggcggc tcaccgttcc ggtcggcatc
     3061 gtcgacaagc cttacgagca gcgccgtgac ctgctgtggg cggatctttc cggcgcggcg
     3121 ggccacgccg tggtcaccgg cggtccgcaa tcgggcaagt ccacgttgct gcgctcgatg
     3181 ttgctgtcac tggcgctcac ccacaccgcc gaggaagtgc agttcttctg catcgacttc
     3241 ggtggtggca cgctggcgtc gctggacggc ctgccgcaca gcggtggggt tgcgggccgg
     3301 ttagaaccgg acatcgtccg gcgcatcctt gcggaggtca cggggctgct cgctacgcgc
     3361 gaacagcggt tccggtcgct gggcatcgac tcgatggctg agtaccggat ccgcaaacag
     3421 cacgcccgct cttccgggga gaaagacccg ctccaggaag accagttcgg tgatgtgttc
     3481 ctggtgatcg acgggtggca cagttttcgc caggagttcg acatcagcga cttggagatg
     3541 cgggtcgtga acctggcgac ccagggcctc tcctacgggg tgcacgtgat gatcggcgca
     3601 acgcggtggg cggagatccg gcccgcgctc aaagacctgc tcggtacccg tttcgagctg
     3661 cgcctaggtg atccgggaga gtccgacatc gaccggcggg tggcggtcca ggtgcctccg
     3721 ggacgccccg ggcggggcct gtcccgggac aagctgcact ttctcgccgc gttgccccgc
     3781 atcgacgcgg tcaccagtgc gcgggacgcc ggcgccgggg tcgctgacgc tgtcacacac
     3841 atccgccagg catgggccgg ccgcggcgcg ccgcgggtcc ggctgctgcc ggaacgaatc
     3901 gcctatcagc a
//
LOCUS       DASVXZ010000393         1806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_490332, whole genome shotgun sequence.
ACCESSION   DASVXZ010000393 DASVXZ010000000
VERSION     DASVXZ010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490332"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VF788_08150"
     CDS             complement(<1..812)
                     /locus_tag="VF788_08150"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF019205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX8934150.1"
                     /translation="MNNWDFSVPADDFPEPMLLVSPDGEVLAINRAAREDFGLGAGYP
                     ATHLCDLVADAREKVMAFVRLCSSTREAVPGALSFRTPAGILDCRCDGHRTADGLVYL
                     RCRPKDTSNQAFTVLNEKIAELAREIAFRMRTEERLEELLKSREILIQELHHRIRNSI
                     QVAISLAGLQMRQATDGATREQFLKHGNRLKAIGLVYRTLYREQDFTSLDISAFVNDL
                     CTELGRAYRGSEMSFSIQVEATLLSLEQAVPFALIVNELVTNALVHAFEAGGR"
     gene            complement(809..1354)
                     /locus_tag="VF788_08155"
     CDS             complement(809..1354)
                     /locus_tag="VF788_08155"
                     /inference="COORDINATES: protein motif:HMM:NF037269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methanogen output domain 1-containing protein"
                     /protein_id="HEX8934151.1"
                     /translation="MTSSNTGDRAKVEELPLALERDLFLRSLIRELAGTLQDVVGVRE
                     ASGYISVVGARIGEQINHDYKTALAVDRLTREQVAAVLVDLKRRIQGDFRVIEENADR
                     IVLGNRACPFGDKVLGRPSMCMMTSNVFGHIAADNLGYARVELQETIAQGHPGCRVVV
                     HLKPSGEPGEGREYFRPRTPQ"
     gene            1526..>1806
                     /locus_tag="VF788_08160"
     CDS             1526..>1806
                     /locus_tag="VF788_08160"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8934152.1"
                     /translation="MQHAILLLPASAAAPGPAMHPAEETGAGGRIAAPVRVLLVEDEI
                     LTALDIEYLVQQLGYEVCGIAASAPEAVQAADELRPDLVLMDIRLARGT"
BASE COUNT          307 a          585 c          592 g          322 t
ORIGIN      
        1 cgtccacccg cttcaaaggc gtgcaccagc gcgttggtga ccagctcgtt gacgatcagg
       61 gcaaagggaa ccgcctgctc caggctcagc agcgtggcct cgacctggat cgagaaggac
      121 atctccgatc cgcggtacgc cctgcccaac tcggtgcata ggtcgttgac gaatgcgctg
      181 atgtcgagcg aggtgaaatc ctgctcccgg tacagggtcc gataaacaag cccgatcgcc
      241 ttgagccggt tgccgtgctt gaggaactgc tcccgggttg caccatcggt cgcttggcgc
      301 atctgcagcc cggccaggct gatcgcaacc tgaatgctgt tacggatgcg gtggtgcagt
      361 tcctggatca ggatctcccg gcttttcagc agctcctcca gccgctcctc ggtgcgcatg
      421 cggaaggcaa tctcgcgcgc cagctccgcg atcttctcgt tcaggaccgt gaacgcctgg
      481 ttcgacgtgt ccttgggccg gcagcgcaga tacaccagac cgtcggcggt ccggtgaccg
      541 tcacagcggc agtcaaggat gccggctggc gtgcggaagc tcagggcgcc gggcacggct
      601 tccctggtcg aggaacacag gcggacaaac gccatgacct tctcacgagc atcggccacc
      661 aggtcgcaca ggtgggttgc cgggtatccg gcgccgagcc cgaagtcctc ccgtgccgcc
      721 cggttgatgg ccagcacctc gccgtcaggc gacaccagca gcatcggttc cgggaagtcg
      781 tcggccggaa ccgagaagtc ccagttgttc attgcggcgt tcggggcctg aaatattccc
      841 gcccttcgcc cggttccccg gagggcttga gatggaccac cacccggcag cccgggtgtc
      901 cctgcgcgat cgtttcctgc agctcgacac gggcgtagcc gagattgtcg gcggcgatgt
      961 ggccgaagac attggaggtc atcatgcaca tcgagggccg gcccagcacc ttgtcaccga
     1021 acggacaggc acggttgccg agcacgatcc tgtcggcatt ctcctcgatg acccggaaat
     1081 caccctggat gcggcgcttg aggtcgacca ggacggccgc gacctgctcg cgcgtcaggc
     1141 ggtcaaccgc cagagcggtc ttgtagtcgt ggttgatctg ctcgccgatc cgggcgccga
     1201 ccacgctgat gtagccggag gcctcgcgca ccccgaccac gtcctggagt gtgccggcaa
     1261 gctcgcggat caggctgcgc aggaagagat cgcgttccag ggccagagga agttcctcga
     1321 ccttggccct atctccagtg ttgctgcttg tcaaagacac ctccgccttc aggacaattc
     1381 cgcctcacca tggcacgctg ttccagggga ggtttgacat ggcgccgctt acgggcaaag
     1441 ctgccggcct gtaacgagga ggtcgagacc agccgttgcc gccagtaccg gcttcagggg
     1501 catagcgtat cttgaggaag atgtcatgca gcacgccatt ctcctgctgc cggcgagcgc
     1561 cgcggcgcct ggtccagcga tgcacccagc cgaggagact ggcgcaggcg gtcgcattgc
     1621 ggccccggtt cgcgtgctgc tggtcgagga cgagatcctg accgcgctgg acatcgagta
     1681 tctggttcag cagctgggct atgaagtgtg cggcatcgcg gcctcggcac cggaggcggt
     1741 gcaggcggct gatgagctgc gccccgatct ggtgctgatg gacatccggc tggcgcgcgg
     1801 caccga
//
LOCUS       DASVXZ010000394         2429 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_311094, whole genome shotgun sequence.
ACCESSION   DASVXZ010000394 DASVXZ010000000
VERSION     DASVXZ010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311094"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..229
                     /locus_tag="VF788_08165"
                     /pseudo
     CDS             1..229
                     /locus_tag="VF788_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014249967.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            805..2130
                     /gene="ltrA"
                     /locus_tag="VF788_08170"
     CDS             805..2130
                     /gene="ltrA"
                     /locus_tag="VF788_08170"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR04416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEX8934153.1"
                     /translation="MSLATPDSVRTLQRKLYLKAKAEPDYRFYLLYDKIYRADVLRHA
                     YELVRANRGAPGVDGVTCPEIEAAGLEDWLGGLAQDFRTKAYQPQPVRRVMIPKPGGD
                     GERPLGIPTIRDRVAQTAAKLVLEPIFEADLEPTAYGYRPGRSGTDAVKVVHRLLCQG
                     FTEVVDADLSRYFDTIPHSELLRSVAVRIVDRHVLGLLKLWLKTPVEETDPDGRRRMS
                     GGKHSKCGAPQGGPLSPTLANRYMNRFLRHWRQQGRGKAYQAHVVAYADDFVILSRGH
                     AEEALAWTRQVMTRLGLTVNEVKTAVRDARQEHFDFLGYSFGPHYYRKDGRWYLGASP
                     SRKSVQRLKDRIGELLVPSNTAPWREVRDRLNQQLRGWANYFAYGTRLMAYRAVDHHV
                     HATVRGFLTRRHKVPTRGTRRFTDKVVFEELGVLRLRRLHIGAPPTAAR"
BASE COUNT          439 a          736 c          874 g          380 t
ORIGIN      
        1 cgcggcacgg catccggatg ccgaggtgat cgtgccgccg cgctcgggcg cggtgccgag
       61 cgacgcggcc gagaccgcgc cgacgcagcg ggaccgccat ctgcgggtca ccgccgagcg
      121 tggccgcatg ggatggcaga aggcctcggg gtacaactgg cgtgccctgg tggaggccga
      181 tatcgcgcgc tggaaatgcg tcatcggcgg cgggctgcgc tcccagacgg atgggcggcg
      241 agcgaccgaa gtggccatcg ccgccggcgt cctgaaccgc atgctcgacc ttggacgccc
      301 ggagtatgtc gtgcgcccca acggcgcggt tcaccagtgg aggaaggaac cacccagaga
      361 gttgtcggta ggctctggta gctgacgagc ggcacggccg ggtaaccgac cgggtcgaag
      421 cctcgtgaca aaggccgccg ttgggcggtt gagcaatccg gcaggccgca acgcgagtga
      481 agcccgagca ggcctcgaaa gtgaagtgat ggacgccgac ccgcctgaat aacggggaag
      541 gcccacgtgg gatggggaag caaccgacaa gtgcacccgt tctggtccat cggggtagtg
      601 ggcgcggcat gtcggaaggg tgaaccgggt aattggggga ggcccatcat gggcgagggt
      661 cgtggcctca acgtcgcttc caggcggcgg tccgggtggg tgtcggacag ggtcacggta
      721 ccgttgaggc tgggtaatgc cggcggaggg aaggaccctg acttctggtg tgctttcaac
      781 caagcggagg agcggtgatt ggcgatgagc ctggcaacac cggacagcgt caggacgctt
      841 cagcgaaagc tgtatctcaa ggcgaaggcg gagccggact accggttcta cctgctctac
      901 gacaagatct accgggcaga tgtgctgcgg catgcctatg agctggtgcg cgccaatcgg
      961 ggtgcaccgg gcgtggatgg cgtcacctgc ccggagatcg aggcggcagg gctggaggac
     1021 tggctgggcg gccttgcaca ggatttccgg accaaggcat accagccgca acccgtgcgc
     1081 cgggtgatga tcccgaagcc cgggggcgat ggtgagcgcc cacttgggat tccgacgata
     1141 cgggaccggg tggcgcagac tgccgcgaag ctggtgctgg agccgatctt cgaggcggac
     1201 ctcgaaccca cagcctatgg ctaccggccg ggccgcagtg gtacggatgc ggtcaaggtg
     1261 gtgcaccgac tgctttgcca ggggttcacc gaggtggtgg acgccgacct gtcgagatac
     1321 ttcgacacga tcccgcactc cgagctactt cgctcggtcg cggtgcggat cgtcgatcgg
     1381 catgtgttgg gcctgctcaa actgtggctc aagacaccgg tcgaggaaac ggacccggac
     1441 ggacggcggc gcatgagcgg gggcaaacac agtaagtgcg gtgcgccaca gggcggccca
     1501 ctttcaccga cgttggccaa tcgctacatg aaccgcttcc tccggcactg gcgacagcag
     1561 ggacgtggta aggcgtatca agcgcatgtg gtggcctatg ccgatgactt cgtcatcctc
     1621 agccgcgggc acgcggagga ggctctggcg tggacgcggc aggtcatgac gcggcttggc
     1681 ctgaccgtga acgaggtgaa gacggccgtg cgcgatgcac ggcaagagca cttcgacttc
     1741 ctgggctaca gcttcggccc gcactactac cggaaggatg gccgttggta cctgggcgcg
     1801 agcccgtcgc ggaagagcgt gcagcgtctc aaggaccgta tcggagagct tctggtcccc
     1861 tccaacacgg cgccttggcg tgaagtgcga gatcggctga accagcaact gcgtggctgg
     1921 gcaaactact tcgcttacgg cacgcggttg atggcctacc gagcagtgga ccaccacgtt
     1981 catgctacgg tccgcggatt cctgacacgg cgacataagg tgccgacacg cggcactcgg
     2041 cgcttcacgg acaaagtcgt ctttgaagag ctgggcgtgc tccggctacg ccggctgcac
     2101 ataggagcgc cgccgacagc tgcgaggtga agccagtcgg aaagccggat gccggaaatc
     2161 ggcacgtccg gtttgatgag cggggacggg aaacagggtg atgccggatg gcccaagcca
     2221 ctgcgcccgt cctcgactct acccaggttc gctcgccgtc actatgccgc gcggctccgg
     2281 cgccaagcgg ccggtggcga gcccgtcagc tttttgaagg cccggttgaa ggccgcctcc
     2341 gactcgtatc cggcctcttc cgctacctgc gcgatggcaa cacccggcct ctccagcagc
     2401 cgtgccgcca gctgcaggcg ccagcgggt
//
LOCUS       DASVXZ010000395         2096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1634621, whole genome shotgun sequence.
ACCESSION   DASVXZ010000395 DASVXZ010000000
VERSION     DASVXZ010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1634621"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            380..>2096
                     /locus_tag="VF788_08175"
     CDS             380..>2096
                     /locus_tag="VF788_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019045825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEX8934154.1"
                     /translation="MSVITDAAARTGTHTGSTAAMTELLDRLRVLTDAAGRPDLGSHL
                     AQARTRVMDPRLRIVLTGQAGQGMSSLVEAIIGEPLTATGTRSADPIVLTYSDSDSVR
                     KVTSGAGLVPRVEVGAPNELLAEGVVLIDTPGTSGMESIRASAVLSLLPGADAVLFVS
                     DASQEYTEPEITFLRQIRQLCPTVIGVITKIDLYPRWTDIQRANRIHLTNAGLDIPLL
                     PLSAVMAETALRIGDTELSVESGVPQLVEFLRHRVIGEADVVLRNAVINDVRFVSDHL
                     AMALNAELDALHDPRSGAGLIQRLQDAREAADQLRQRTANWHVVLGDGVTELSVDVEH
                     DLRHRLRSVLREAEADIMTSDPAKRWEQFGTWLHGRIAESVQDNFILAHTRSRDLAEK
                     VAARFADEGQVAVPELYLDRIGAILEPVNSLEPLDSRKAGIVQRVLTSMRGSYGGVLM
                     VGLMTSLAGLALVNPWSIGAGVLLGANTFWEDHKSHTSRRQAEAKAAVARLMDDVIFQ
                     VGKESKYRLRETQRTLRDHFAMIATEMLRSADEALRAAQEASQVHANHRAGRIAEVQN
                     GLSDLR"
BASE COUNT          366 a          747 c          661 g          322 t
ORIGIN      
        1 agacgggctc cggaactagt ccgcaccccg gcactgctac taccacgacc cctgccaccg
       61 ctgcgccggc tcccgcgtcc agcgtcggtc cgcaccctgc ggccgcttcg acgtccagca
      121 tgggatctga cctcagttcg cacaacgcaa gtaccggcac agtggcgatg ccggaaagcg
      181 atcacaccgg gttgtcgtct agctcgcacg ggctctccag cgggctggcg acaagcgcag
      241 ctccgacgga cgtcccgacc gatcacccga cgaccgacca caccactctc gtccaccact
      301 gatcaccgcc ggtccgcgcc ggggctcctg gcgcggaccg gcccggtcgt ccacgctccg
      361 caccgaagga gacccccaga tgtccgtaat aacggatgcc gctgcccgaa ccggtacaca
      421 caccgggtcc accgcggcca tgaccgagtt gctcgaccgg ctgcgcgtgc tcaccgacgc
      481 cgcgggacgg ccggacctcg gctcccacct cgctcaggcc cggacccggg tgatggaccc
      541 ccggctgcgc atcgtgctga ccgggcaggc cggtcagggc atgagctcac tggtcgaggc
      601 gatcatcggc gagccactga ccgccaccgg aactcgctcg gccgacccga tcgtcctcac
      661 ctactccgac tccgactccg tacggaaggt gacctctggc gccggtttgg tgccccgcgt
      721 tgaggtaggc gcaccgaacg aactgttagc cgaaggcgtc gtgctcatcg acacgccggg
      781 aacctccggc atggaatcca tccgcgcgag tgcggtgctg tccttgctgc ctggggccga
      841 cgcggtgctg ttcgtttccg acgccagcca ggagtacacc gaacccgaga tcacgttcct
      901 gcgccagatc cggcagctct gtcccaccgt catcggcgtg atcaccaaga tcgacctcta
      961 cccccggtgg accgatatcc agcgtgccaa ccgcatccac ctgaccaacg cgggcctgga
     1021 catccccctg ctgccgctgt cggcagtaat ggcggagacc gccctgcgca tcggggacac
     1081 cgaactctcg gtcgagtcgg gcgtgccgca actggttgag ttcctgcgcc accgcgtaat
     1141 cggtgaggcc gacgtggtgc tgcgcaacgc cgtgatcaac gacgttcgct tcgtctcaga
     1201 tcatctggcg atggcgctga acgccgagct ggatgccctg cacgatcccc gcagcggagc
     1261 cggactcatc cagcgactgc aggacgcccg ggaggccgcc gaccagctgc ggcaacgcac
     1321 agcgaactgg cacgtggtac tcggcgacgg cgtgacggag ctgagcgtcg atgtcgagca
     1381 cgacctgcgc caccggctgc gcagtgtcct gcgcgaggcc gaggcggaca tcatgacttc
     1441 cgacccggcg aaacggtggg agcagttcgg tacctggctg cacgggcgca tcgctgagtc
     1501 cgtccaggac aacttcatcc tggcgcacac ccgctcacgt gatcttgcgg agaaggtggc
     1561 cgcccgcttc gctgacgaag gtcaggtagc ggtcccggag ctctacctgg accgtatcgg
     1621 cgcgatcctc gaaccggtca actccctgga accgctggat agccgcaagg ccgggattgt
     1681 gcaacgagtg ctcacgagca tgcgaggctc ctacggtggt gtcctgatgg tggggctgat
     1741 gaccagcctc gcaggattgg ctctggtgaa cccgtggtcg atcggggccg gggtgttgct
     1801 tggcgcgaac accttctggg aggaccacaa gtcacatacc tcccggcgtc aagccgaagc
     1861 caaggccgcg gtcgctcgcc tgatggacga cgtgatcttc caggtcggca aagagtcgaa
     1921 gtaccggctc cgggaaaccc agcggaccct gcgtgatcac ttcgcgatga tcgccacgga
     1981 aatgctgcgc tcggccgacg aggcactgcg ggctgcccaa gaggccagcc aggtccacgc
     2041 caatcaccgc gccggccgga tcgccgaggt tcagaacggc ctgagcgacc tacgcc
//
LOCUS       DASVXZ010000396         4614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_132579, whole genome shotgun sequence.
ACCESSION   DASVXZ010000396 DASVXZ010000000
VERSION     DASVXZ010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132579"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..1411)
                     /locus_tag="VF788_08180"
     CDS             complement(65..1411)
                     /locus_tag="VF788_08180"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8934155.1"
                     /translation="MAQATKSMKEFGDKGFLRRLTLATAWGEGLDGFDLGVLSVVLVP
                     LAKELGISPVWAGLIGASSLIGIFLGAPIGGFLTDRFGRKQLFLIDICLFVVLGVLQA
                     FVAEGWQLFVVRLLLGIAIGAEYSIGSSMLSEFVPAHGRGRRVSYMLVFWYGGYLFSV
                     VAAYGLLEGLGWSWRWTLATSAIPALVVLGLRIGLPESPRWLMLHGRTEEARAIIDRY
                     LGGEEHMAEADYGSDTKSDAGWRQLFAPGMRSRTFFVCIFYICVVTPYFAIFTFAPKV
                     FESLKLNEMAGTIFANSIAFIGAIVGMLTIELIGRRKQLIGPFWIMTVALLIIGLWSG
                     APPMALVGAFAVFAFFNALAGNLTAVYPIEVFPTDVRATGVGIANAFSRIGAAAGTFL
                     LPVGIEAIGLPWCMVIGAALCVIGAVVSQLLAPETTGKSLSHTGAATRLSPGLATT"
     gene            1576..2574
                     /locus_tag="VF788_08185"
     CDS             1576..2574
                     /locus_tag="VF788_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009081744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934156.1"
                     /translation="MSAALVLRYLLRKSLGWLLMIVVATNLTYFLANFFLDPRANYLQ
                     LRPPRTPEQISRSLAQYNLSRDDPLLERWWHWISGIVLHWDWGYSPVGESVNSQISFR
                     IGVSAQLVLGSLVLSTLIGIGLAVYTAARQYRFADRFYQGVSIITLNTPVVVASLAVV
                     LLAIALNQAVGSTLLFVAGAQSPTVTGFWPLVLDRVRHLILPTISLTVISYAGYHLLQ
                     RSLLLDNINSDYVRLARAKGLTRQSAIRRHGLRTSLIPVAISVAFAIPALFTGAVITE
                     TIFAWQGMGQYFTQSISKNDIHGAVAVAAFGALMTAVGAILADIAVVALDPRVRVS"
     gene            2574..3515
                     /locus_tag="VF788_08190"
     CDS             2574..3515
                     /locus_tag="VF788_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009081746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934157.1"
                     /translation="MTINVPPLQPTVDNAALSPMEERVARRGQRLSRRLLYTRRFLRN
                     RGAVAGLVILGLLVVFAIAGPMVTPYTYTGVDFTNLTSAPSRAHWFGTNGTGNDTFAQ
                     TTHGLQRSMIIGVVVSLLTTVISAFVGAAAAYLGGTAEKTILGIVHFLLVVPSFLILA
                     LISQKAGGDWKVLILVLTAFGWMYGARVVWSLSTSLREREYILAARFMGVSSLRIVLR
                     HLIPNIGSLLIVSFTLGVVATVQAETGLSFIGFGVKQPDVSLGSLLGDGANTITSAPW
                     LFYFPAAMLTLLTVSMALIGDGLRDALDPTSHSGGRA"
     gene            3512..>4614
                     /locus_tag="VF788_08195"
     CDS             3512..>4614
                     /locus_tag="VF788_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934158.1"
                     /translation="MTASPQVAPLLSVRNLAVSFPSEAGRVDAVRGVDFDLYPGRTLA
                     IVGESGSGKSVTSMAVMGLLPEYASVTGSIALGGRQLLGLDDRQMSKIRGRDLGMIFQ
                     DPLSSLTPIFSVGRQIVEALEIHQNLDRDVAWKRAVELLDLVGIPNAAERARSFPHEF
                     SGGMRQRVVIAMAMANDPQIIIADEPTTALDVTVQAQILEVLRLSQAETGAALILITH
                     DLGVVAGIADEVLVMYAGRPVERAPVDELFARPRMPYTIGLLGAVPRLDVAERRPLVP
                     IQGSPPLLVDLPPGCPFQPRCPVSVPACGDREPDLAVVPGGGDEHSAACIRVHEIRDG
                     RIEDRPVYPVAPAPDAPAAHVPREQRPAVLELGG"
BASE COUNT          740 a         1595 c         1502 g          777 t
ORIGIN      
        1 gcgaccatgc ctcgctgcgg cggtcagacc ttccgaccgc tgccgaccgg cattgatcag
       61 attgctaggt ggtagccagc cctggggaaa gccgggtggc cgcgccggtg tggctgagcg
      121 atttgccggt ggtctccggg gcgagcagct gggagacgac ggcgccgatc acgcacagcg
      181 ccgccccgat caccatgcac cacggcaggc cgatggcctc gattccgacc gggagcagga
      241 atgtgcccgc cgcagccccg atccggctga atgcgttggc gatgccaacc ccggtggccc
      301 gcacgtcggt cgggaacacc tcgatcgggt acacggcggt gaggttgccg gccagggcgt
      361 tgaagaacgc gaagaccgcg aaggcaccaa ccagcgccat cggcggtgca ccggaccaca
      421 gcccgatgat cagcaacgcc accgtcatga tccagaaggg gccgatcagc tgcttgcggc
      481 gcccgatcag ctcgatcgtc agcatgccga cgatcgctcc gatgaacgcg atgctgttgg
      541 cgaagatcgt gccggccatc tcgttcagct tcagcgactc gaataccttc ggggcgaacg
      601 tgaagatcgc gaagtacggc gtcaccacgc agatgtagaa gatacagacg aagaaggtgc
      661 gcgagcgcat ccccggggcg aacagctgcc gccagccggc gtcgctcttc gtgtccgagc
      721 cgtagtcggc ctcggccatg tgctcctcgc ccccgaggta acggtcgatg atcgcgcggg
      781 cctcctcagt gcgcccatgc agcatcagcc agcgtggcga ctcgggtagc ccgatgcgca
      841 gccccagcac gaccagtgcg gggatcgcgc tggtggccag ggtccagcgc cagctccaac
      901 ccaggccctc cagcaggccg taggcggcca ccaccgagaa cagatagccg ccgtaccaga
      961 agaccagcat gtaggacacc cggcggccac gtccgtgcgc cggcacgaac tccgagagca
     1021 tcgacgagcc gatggagtac tcggctccga tggcgatacc cagcagcagc cgcacgacga
     1081 acagctgcca tccctcggcg acgaacgcct gcagcacgcc gaggacgacg aacaggcaga
     1141 tgtcgatcag gaacagctgc ttgcgaccga accggtcggt gaggaaaccg ccgatcggtg
     1201 cgcccaagaa gatgccgatc agcgaggacg ccccgatcag gccagcccac accggcgaga
     1261 tcccgagctc cttcgccagc ggcaccagca ccacgctgag caccccgaga tcgaaaccgt
     1321 cgagaccctc gccccacgcc gtggccagcg tcaaccgccg caggaagccc ttgtcaccga
     1381 actccttcat gctcttcgtg gcctgcgcca tctcgcaccc tccctccccc cgccgtcaca
     1441 gtcctcagca aagataatca cgcgccgggc cccgcagcca ggaacgcacc ggtcgggcct
     1501 gcgctgaact atgactgttg cttcactaca acgggcgatc ggatacgttc ccctcaccga
     1561 tccgcacgag agaaagtgag cgcagcgctc gtgctgagat atctgctcag aaagtctctt
     1621 ggctggctgc tcatgatcgt cgtggccacc aacctgacgt acttcctggc gaacttcttc
     1681 ctggacccgc gggccaacta cctccagctg cggccacctc gcacgcccga gcagatcagc
     1741 cgctcgctgg cccagtacaa cctcagccgg gacgacccgt tgctggagcg ctggtggcac
     1801 tggatcagcg gtatcgtctt gcactgggac tgggggtact cgccggtcgg ggagagcgtg
     1861 aactctcaga tcagcttccg gatcggggtg agcgcccagc tcgtgctggg atcgctggtc
     1921 ctctccacgc tcatcgggat cggtctggcc gtgtacaccg ccgctcgcca gtaccggttc
     1981 gccgaccgct tctatcaagg cgtgtcgatc attacgctca acactccggt ggtcgtcgcc
     2041 tcgctggcgg tggtcctgct cgcgatcgcg ctcaaccagg cagtgggcag tacgttgctg
     2101 ttcgtcgcgg gggcccagtc ccccacggtg accggattct ggccgttggt gctggaccgg
     2161 gtgcggcatc tgatcctgcc gaccatctcg ctcaccgtga tcagctacgc cggctaccac
     2221 ctactgcaac gttcgctact gcttgacaac atcaactcag attacgtgcg gctggccagg
     2281 gccaaggggc tgacccggca gagcgccatc cgccggcacg ggctgcgcac gtcgctgatc
     2341 ccggtcgcca tctcggtagc attcgcgatc ccggcgctgt tcaccggggc ggtgatcacc
     2401 gagacgatct ttgcgtggca gggcatgggc cagtacttca cccagtcgat cagcaagaat
     2461 gacatccacg gcgcggtcgc cgttgccgca ttcggcgcgc tgatgaccgc ggtcggcgcg
     2521 atcctcgccg acatcgccgt cgtggcactg gatccgagag tgcgagtgag ctgatgacca
     2581 tcaacgttcc cccgctgcag cccaccgtgg acaacgctgc cctgtctccc atggaggagc
     2641 gggtggcccg ccgcggccag cggctgtccc gccgcctcct ctacacgcgc cgattcctgc
     2701 gcaaccgggg cgcggtggcc ggactggtga tcctgggcct gctggtggtg ttcgcgatcg
     2761 ccggcccgat ggtgaccccc tacacctaca ccggcgtcga cttcaccaac ctgacttcgg
     2821 cgccctcgcg ggcgcactgg ttcggcacca acggaaccgg caacgacacc ttcgctcaga
     2881 ccacgcatgg cctgcagcgc tcgatgatca tcggcgtggt ggtgtccctg ctcaccaccg
     2941 tcatctcggc gttcgtcggg gcggctgccg cctacctggg tggcaccgcg gagaaaacca
     3001 tcctcgggat cgtgcacttc ctgctcgtgg tgccctcctt tctcatcctg gcgctgatct
     3061 cgcagaaggc cggcggcgat tggaaggtgc tgatcctggt gctgactgcg ttcggctgga
     3121 tgtacggcgc gcgggtggtg tggtcgctgt ccacctcgct gcgtgagcgg gagtatatcc
     3181 tggcggcccg gttcatgggc gtgagctcgc tgcggatcgt gctgcgtcac ctgatcccga
     3241 acatcggttc gctactgatc gtttcgttca ccctcggcgt ggtcgccacg gtgcaggcgg
     3301 agaccgggtt gtcgttcatc gggttcggcg tgaagcagcc cgacgtgtcg ctgggctcgt
     3361 tactcggcga cggcgccaac acgatcacca gcgccccctg gttgttctac tttccggccg
     3421 ccatgctcac cctgctgacc gtctcgatgg cgctgatcgg ggatggcctg cgtgatgctc
     3481 tggaccccac ctcgcactcc ggcggccgag catgacggcg tccccgcagg tcgcgccgct
     3541 gctgtcggtc cgcaatctgg cagtgtcctt tccctcagag gccggccggg tagacgccgt
     3601 gcgcggcgtc gacttcgatc tgtaccccgg ccggacgctc gccatcgtcg gcgaatccgg
     3661 ctcgggcaag tcggtcacct cgatggcggt gatggggcta ctcccggagt acgcctcggt
     3721 gaccggctcg atcgcgctgg gcggccgtca gctgctcggt ctggacgaca ggcagatgtc
     3781 caagatccgt ggccgggatc tgggcatgat cttccaagat ccgctgtctt ccttgacgcc
     3841 gatcttcagt gtcggccggc agatcgtcga ggcgctggag atccaccaga acctggaccg
     3901 cgacgtcgcc tggaaacggg cggtggagct gctcgacctg gtcgggatcc ccaacgcggc
     3961 cgagcgggcc cgttcgttcc cgcatgagtt ctccggcggg atgcggcagc gagtggtgat
     4021 cgccatggcg atggcaaacg atccgcagat catcatcgcc gacgagccga ccacggcgct
     4081 ggacgtgacg gtgcaggcgc agatcctgga ggtgctgcgg ctgtcccagg ccgagaccgg
     4141 tgcggcgctg atcttgatca cccatgacct cggcgtggtg gccgggatag ccgacgaggt
     4201 gctggtgatg tacgcggggc gcccggtcga gcgggcaccg gtggatgaac tgttcgcccg
     4261 gccccggatg ccgtacacga tcggcctgct cggcgccgtc ccccggctgg acgtcgccga
     4321 acgccggccg ctggtgccta tccagggcag ccctccgttg ctggtggacc tgcccccggg
     4381 ctgcccgttc caaccgcgct gcccggtctc ggtgcccgca tgcggcgacc gggagccgga
     4441 cctggcggtg gttcctggag ggggggacga gcacagcgct gcgtgcatcc gtgtccacga
     4501 gattcgcgac ggccggatcg aggaccgccc ggtctatccg gttgcgccag cgccggacgc
     4561 accggcggcg cacgttcccc gggaacagcg tcccgctgtc ctggaactgg gcgg
//
LOCUS       DASVXZ010000397         2403 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_42324, whole genome shotgun sequence.
ACCESSION   DASVXZ010000397 DASVXZ010000000
VERSION     DASVXZ010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42324"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VF788_08200"
     CDS             <1..542
                     /locus_tag="VF788_08200"
                     /inference="COORDINATES: protein motif:HMM:NF021883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenylosuccinate lyase family protein"
                     /protein_id="HEX8934159.1"
                     /translation="PGQVGSITMPHKRNPEQSEHLVTLARVVRADAGVTLEGLVGDHE
                     RDGRSWKAEWVVLPEACLLTGVSLQLASRLLEGLVVHAGKMRANVEAGGGYILSEPVM
                     RALADQIGKHAAQRAVYDATMAGLVRGITLGEALATDPVVSSHLDSVQITQCLDPYRA
                     LGATTAFVDRVLAAAECPL"
     gene            539..1540
                     /locus_tag="VF788_08205"
     CDS             539..1540
                     /locus_tag="VF788_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX8934160.1"
                     /translation="MTGLWELPRVELATAPTPLRPAPELSTMLGVEIWFKRDDLTGFG
                     LGGNKVRTLEYLLGDALSRGSDCLVTGSGPQSNWAMLAALAARRCGLDAYLVCYGPPV
                     PATGNLQLAELAGARISFTGSPDRASVDAGIALLADELRRNGHRPCALPRGGATPIGA
                     LGYARASLELAEQLFATGLRPRQLWLATGSGGTQAGLLAGARWLQLPFEVVGVTVSRP
                     APECVQRVGELAAGAATLFSANTPDVADVISNAVTVIDGFLVPGYGVASAAGTDAARL
                     VAHSEGVFLDPVFGAKAMAALISASSGVVNSYRAISPVVFLVTGGVPTLFTVTGGKT"
     gene            1537..>2403
                     /locus_tag="VF788_08210"
     CDS             1537..>2403
                     /locus_tag="VF788_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEX8934161.1"
                     /translation="MTGPADELIAAGYALEIADAPLVHRGLTLADLAHVLDLRTAKVV
                     PEEPSRQLLKLLLDILDVPAEEFPYDPAHGEIYNSRERYFVGQIGDAAGWLHAGRPRR
                     EAMRIAFRLHLRDLLTDLIQTAAELAAELARLAGQHNETWMVDQTYLQHAQPSTFGHY
                     ALSFAYPVLRDGRRLIDALAWVDASPGGAGGVNGTALLTDRSHIAALLGFSSVIEHTR
                     DAMWQTDGLIDSCGACASLLITQAKLAEDLEIWASAEFGYVTVDDAYSRSSVLMPQKR
                     NPYALTMIRGASG"
BASE COUNT          391 a          748 c          814 g          450 t
ORIGIN      
        1 cgcccgggca ggtgggcagt atcaccatgc ctcataaacg caatcccgag cagtccgaac
       61 atctggtcac cctggcgcga gtggtgcggg ccgacgcagg cgtcaccctt gagggcctgg
      121 tcggcgacca tgagcgcgac ggccgttcgt ggaaggccga atgggtggta ctacccgaag
      181 cgtgcctgct tactggagtt tcgttgcagc tggcctcgcg gctgctggag ggcctggtgg
      241 tgcatgccgg caaaatgcgg gccaacgtgg aggcaggtgg cggctacata ttgtccgagc
      301 ccgtgatgcg cgcattagcc gaccagatcg gcaagcatgc ggcacagcgt gcggtatacg
      361 acgccacaat ggccggcctc gtacgcggta tcaccttggg cgaagctcta gcgacagatc
      421 cggtagtcag cagccacttg gactcggtgc agatcaccca atgtctggat ccgtaccggg
      481 cactgggagc caccaccgcg ttcgttgacc gggtgctcgc tgcggcggag tgcccactgt
      541 gacgggcctg tgggagctgc cacgggtaga gctggccacg gcgccgacac cgcttcgacc
      601 ggcgccggag ctctccacga tgcttggcgt cgaaatctgg ttcaaacgtg atgacctcac
      661 cggtttcggt ctcggcggga acaaggtgcg gacgctggag tatctgttgg gcgacgcact
      721 gagtcggggc agtgactgcc tggtcactgg ttctgggccc cagtcgaact gggcgatgct
      781 cgcggcgctc gccgcgcgcc ggtgcggctt ggacgcctac ctggtctgct atgggccacc
      841 agttccggcc accggcaact tgcagctcgc agaactcgcc ggagcgcgca tcagcttcac
      901 cggcagcccg gatcgggcat cggtcgatgc aggtattgcc ctgctcgccg acgagctgcg
      961 gcgtaacggg cacaggccgt gcgcgctgcc tcgaggcggc gcgaccccga tcggtgcgct
     1021 gggttacgcc cgagcgagtc tggaactggc cgagcagctg ttcgccaccg gtctgcggcc
     1081 acggcagtta tggctggcca ccgggtcagg cggcacccaa gccgggttac tcgctggcgc
     1141 gcgttggttg cagctacctt tcgaggtggt gggggtgacg gtcagccgac ctgcgccgga
     1201 gtgcgtccag cgagtcggcg agctggccgc cggagccgcg acgttgttta gcgcgaacac
     1261 gcccgatgtt gcggacgtca tcagcaatgc tgtcaccgtg atcgatgggt tcttggtccc
     1321 tggctacggc gttgcctccg cggcgggcac cgatgctgct cgcctggtcg ctcacagcga
     1381 gggcgtattc ctcgacccgg tattcggtgc gaaggcgatg gccgcgctga tcagcgcgtc
     1441 gagtggggtg gtcaacagct atcgcgcgat cagtccggtg gtctttctcg ttaccggcgg
     1501 tgtcccgacc ctcttcacgg tcaccggagg caagacgtga ctggaccggc tgatgagctg
     1561 attgctgccg gctacgcgtt ggaaatagcg gacgctccgc tggtccaccg cggacttact
     1621 ctcgccgatc tagcccatgt actcgattta cgcaccgcga aggtggtacc cgaagagcct
     1681 tcgcgtcagc tgctcaagtt gttgctcgac attctggatg tgcccgccga ggagtttcct
     1741 tacgaccccg cccatggcga aatctataat tcacgagagc gctacttcgt tggccaaata
     1801 ggtgatgcgg cgggctggtt acatgccggc cgcccgcgtc gcgaggccat gcgaatcgct
     1861 ttccggctgc acctgcggga cctgctcacc gaccttattc agacggcggc cgaacttgcc
     1921 gccgaactgg ccagactggc cggccagcac aacgagacgt ggatggtcga tcagacctac
     1981 cttcagcatg cgcagcccag cacgttcggc cactatgcac tgtcctttgc ctacccggtg
     2041 ctgcgcgacg ggcggcgatt gatcgatgcg ctcgcttggg tagacgccag cccgggcggc
     2101 gcgggcggag tgaatggcac agcgttgctt accgaccgct cccatatcgc tgcgctgctc
     2161 ggtttcagct cggtgatcga gcacactcgg gacgccatgt ggcaaacgga cgggcttatc
     2221 gacagttgcg gtgcctgcgc gagcctgctt atcacccagg caaagctggc ggaggatcta
     2281 gagatttggg cgagcgcgga gtttggctac gtcacggttg acgacgctta cagccgttcg
     2341 agtgtgctga tgccgcagaa gcgaaaccct tacgcgctga cgatgatccg gggcgcatcg
     2401 ggg
//
LOCUS       DASVXZ010000398         1883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_222520, whole genome shotgun sequence.
ACCESSION   DASVXZ010000398 DASVXZ010000000
VERSION     DASVXZ010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222520"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..454)
                     /locus_tag="VF788_08215"
     CDS             complement(17..454)
                     /locus_tag="VF788_08215"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX8934162.1"
                     /translation="MDITELVQKSVDEWNAKDKKAFAANFTESSEITVPGGLVLHGLD
                     GVEKLWDAWQCALPDNQGAIGDVFAAGERACAEVIFEGTHTGTLHIADGQVPATGRRV
                     CVPIAQVHTVCDDKFVTTHLYFDQFELLAELGLIPISAPAHRD"
     gene            965..1762
                     /locus_tag="VF788_08220"
     CDS             965..1762
                     /locus_tag="VF788_08220"
                     /inference="COORDINATES: protein motif:HMM:NF037749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5602 domain-containing protein"
                     /protein_id="HEX8934163.1"
                     /translation="MRRYAASILSSCVALTFLAACGNGQSNKSGTFFGSPQGIGNGTV
                     KTYTTLNNAGDPTEVGIRMSAASLDGLPQEDAVPPHMLILDFPSQASTTPFDHVMLNW
                     NSHGHEPVELFGKPHFDMHFYMVDTAAVMQIDPTKADFTTRAAHLPAQKYVPRDYVTP
                     PGPLADNTVPEMGLHWVDSTGGLVPGKYDFKQTVINGSWDGTYIFIEPMMTREWMLTK
                     QAVQEQIKQPQAYQKSAYFPTTYSVHYDDQAKEYVVSLGGMAMRQES"
BASE COUNT          391 a          571 c          547 g          374 t
ORIGIN      
        1 cgccccgtcc acgtgatcaa tctcgatgag ccggtgcaga tatcggtatc aggccgagct
       61 cggcaagcag ttcgaattgg tcaaagtaca ggtgcgtggt cacgaacttg tcgtcacaga
      121 cggtgtggac ctgtgcgatc ggtacgcaca cccggcggcc ggtggctgga acctggccgt
      181 ctgcgatgtg cagagttccg gtgtgagtgc cctcgaagat cacttcagcg caggcgcgtt
      241 ccccagctgc gaagacatcg ccgatggcac cttggttgtc tggcaaggcg cattgccagg
      301 cgtcccatag cttctccacg ccatccaggc cgtgcagcac caacccaccc ggcacagtga
      361 tctccgagct ttcggtgaag ttggcggcaa acgccttctt gtccttggcg ttccattcgt
      421 ccacgctctt ctggacgagt tccgtgatat ccatgacact cctgttcggg tagctcctct
      481 gggaattgat gctgtagggc tagccgcgcg ctggcggtag ctggtagatc ctctggggat
      541 tcgtcgacca atggtcgtta gcggagtcgg tcgaacaccg tccgcggcgc ccgctaacct
      601 tgccgtctgt gactaaccca ttacctgtca gagccgcgac gacccacggt tgatacctgc
      661 aggcaaaaat ctttgacccg gtagcggcgg ccaccccgtt ccccgggcgc ccaagcagct
      721 gagatgggtg ccgcaaagtg cctggcggaa ccactgacca gcttcacagg cgaccggaca
      781 agcatcgtca ggaatgcgtt gattcgcttt tgcaaaggtc gactcgagat taatacggct
      841 tgcacatgat cgccctacgg gccataatag gccgaccacg acccggtcca ctgggatccc
      901 gagaccgggc gtcgctcgct tacgccaata ttgccaagtg agggtgaata tgcggtctcg
      961 cacaatgcgt cgctacgcag catcgatcct ttcctcctgc gtagcgctga catttcttgc
     1021 cgcgtgcggt aatgggcagt ccaacaagag cggcacgttc ttcgggtcgc cgcagggcat
     1081 aggaaacggc acggtcaaga cctacacgac gctcaacaat gccggcgatc cgaccgaggt
     1141 cggcattcgg atgtcagcgg catcgttgga tgggcttccg caggaagacg cagttccgcc
     1201 ccacatgttg atacttgatt tcccctcgca ggcttcgacg actccctttg accacgtcat
     1261 gctcaattgg aacagtcacg ggcatgagcc ggtggagctg ttcggcaagc cgcactttga
     1321 catgcacttc tatatggtcg acacggcagc ggtgatgcag atcgatccca ccaaggcgga
     1381 cttcacgaca cgggccgcgc acctgcccgc ccagaaatac gttccacggg attacgtgac
     1441 acctcccggc ccgctagccg acaatacggt acccgagatg ggactacatt gggtggatag
     1501 cacgggtggc ctcgtgccgg gtaaatatga cttcaagcag accgtcatca acgggtcgtg
     1561 ggacggcaca tatattttta ttgagccgat gatgacgcgt gagtggatgc tgacgaagca
     1621 ggccgttcag gagcagatca aacagccgca ggcctaccag aagagcgcct acttcccgac
     1681 cacatacagc gtccattatg acgaccaggc gaaggagtac gtggtctcac tgggcgggat
     1741 ggccatgcgc caggaatcat gatccgaggc aaccacggtt ttcagcgctc gggtaaggca
     1801 gcggccgcat tggattacct aactcctccg ccaactacct aaccggccac gggctgcaca
     1861 actaggtagt cggacccgaa ttt
//
LOCUS       DASVXZ010000399         2623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_559179, whole genome shotgun sequence.
ACCESSION   DASVXZ010000399 DASVXZ010000000
VERSION     DASVXZ010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_559179"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1104
                     /locus_tag="VF788_08225"
     CDS             <1..1104
                     /locus_tag="VF788_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8934164.1"
                     /translation="IASGGGVAVTAGTIVAFTTLQTRLLFPTVNLLRVSLDVQTSLAL
                     FARIFGYLDLTPRIVDSPHARVLDTTHLLGRVELDGVWFSYPTATDAGAAPTGSDNAP
                     GAAARAQTTSAPVHALVDISFTVEPGQLAAIVGPSGSGKTTLSYLIPRLYDVDRGRVL
                     IDGHDVRDLTQASLAEAIGMVTQDTYLLHSTIADNLRYARPDATQDEIEAAARAANIH
                     DRILSFAQGYDTVVGERGYRLSGGEKQRLAIARVLLKDPRILILDEATSALDTASERL
                     VQQALEHATQRRTTIAIAHRLSTVLGADVILAVEAGRIVEQGTHAELLAHDGLYARLY
                     TEQFAGGKVEARCADGVRFRDGHALLTGTAHAA"
     gene            complement(1163..1714)
                     /locus_tag="VF788_08230"
     CDS             complement(1163..1714)
                     /locus_tag="VF788_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934165.1"
                     /translation="MPLQRHLDEWEPVISGLVAAHRGDTAADQALDLVLASLEQHADW
                     RQLVAVLRRIRAGERDATLASGLDPIDTAVVQRVLDALTGTARVDVDAWRTGATSTSQ
                     HEQGQQLAALANATVAAARGDPDATNALQPLLHALAAHPDWATLAAALRRILAGERDP
                     TLLDGLDHPVATDVVTLVLNQLT"
     gene            2180..>2623
                     /locus_tag="VF788_08235"
     CDS             2180..>2623
                     /locus_tag="VF788_08235"
                     /inference="COORDINATES: protein motif:HMM:NF018180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxide hydrolase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8934166.1"
                     /translation="MNNTVETAIKIRPFRVDIPEDELADLRRRIAATRWPERETVADE
                     SQGVQLSTTQELVRYWGTEYDFRRFEARLNALPQFITEIDGLDIHFIHVKSPHENALP
                     LIMTTAGPAQSSSCSRPSARSPTRPPTAAGPRTPSTWCCRRCLATA"
BASE COUNT          435 a          915 c          845 g          428 t
ORIGIN      
        1 atcgccagcg gcggtggcgt ggcggtgacc gccggcacga tcgtcgcctt taccaccctg
       61 cagacccggc tgctgttccc gacggtcaac ctgctacgcg tctcgctgga cgtgcagacc
      121 tcgctggccc tgttcgcccg aatcttcggc tacctcgacc tcaccccacg catcgtcgac
      181 agcccacatg cccgggtact ggacaccacc cacctccttg ggagggtcga actggacggt
      241 gtctggttca gctaccccac cgccaccgac gcgggcgccg cgcccaccgg cagcgacaac
      301 gcgccaggcg cggccgcacg ggctcagacc acaagtgcgc cggtccacgc cctggtggac
      361 atctcgttca ctgtcgagcc tggccagctc gccgccatcg tcggccccag cggttcgggc
      421 aagacgacgc tgtcctacct gatcccccgg ctctacgacg tcgaccgcgg cagagtcctg
      481 atcgacggcc acgatgtccg ggacctgacc caggcctcgc tggccgaggc gattggcatg
      541 gtcacccaag atacctacct gctgcactcc accatcgcgg acaacttgcg ctacgcccgc
      601 ccggacgcca cccaagacga gatcgaagcg gccgcgcggg cggccaacat ccacgaccgc
      661 atcctgtcct tcgcccaggg ctacgacacc gtggtcggcg agcgcggcta ccggctctcc
      721 ggaggagaaa aacaacgcct ggccatcgct cgggtgctgc tgaaagatcc ccgcatcctg
      781 atcctggacg aggccaccag cgcgctggac acggccagcg aacggctggt ccagcaggca
      841 cttgagcacg ccacccagcg gcgcaccacg atcgctatcg cccaccgcct gtccaccgtc
      901 ctcggcgccg acgtgatttt ggccgtcgag gcgggccgga tcgtcgagca aggcacgcac
      961 gccgagctcc tcgctcacga cggcctctac gcccggctct acaccgagca gttcgccggc
     1021 ggcaaggtcg aggcccgctg cgcggacggt gtccgattcc gcgacggaca cgccctcctc
     1081 accggcaccg cccacgccgc atgatgtgcc ggtgcccgcc cgtttgggtg cgtgggtggg
     1141 gtcttggcac ggggctgctg gcttatgtga gctggttcag gacgagggtt acgacgtcag
     1201 tggcaacagg gtgatcaagt ccgtcgagca gagtggggtc acgctcacca gcgaggatgc
     1261 gccgcagagc ggcggcgagc gtggcccagt ccgggtgagc ggcgagggca tgcagcagcg
     1321 gttgcaaggc gttggtggcg tcgggatcgc ctctggcggc cgcgactgtg gcgttggcta
     1381 atgcggccag ctgctgacct tgctcgtgtt gggaggtgga tgtggcaccg gtgcgccagg
     1441 cgtcgacgtc gactcgcgcg gtgccggtca acgcgtccag cacacgctgc accacggcgg
     1501 tgtcgatggg atcgagcccg ctggccaggg tggcgtcgcg ttcgcctgct cggatacgac
     1561 gcagcaccgc gaccaactgc cgccagtcag cgtgctgctc caacgaggcc aggactaagt
     1621 cgagggcttg atcggcggcg gtatcaccgc ggtgggcggc cactaagccg gaaatcaccg
     1681 gctcccactc atccaggtgg cgctgtaacg gcaagatcgt acccccctac tcccgagccc
     1741 aggcatctcg acttcacgcc atcctgttaa tcacaggata tctccgcggc aatcctgaaa
     1801 ccgtagagac ttcgatttgg tgtgatcttg ttgtgtggtt tcgttcgcgt cgcgctctta
     1861 acgtccattg tcagcgagtc acccagtgtg accagccggt gctggggagg cccgccgccg
     1921 cggccgcgcg cgacattgcg ccgccggacg tctcgaaagt gccggatgac cggcaggggt
     1981 cggctgagct cccccttcgg gtaggccgcg ttctctccgg cgagctgcag gtgttcgcgt
     2041 gctgattgcg tccctacgat gaagcatcgg cctgtcggct tctagcggcc accgatgagg
     2101 ttgccggacc ggtcggcggc ggctgagtcc gacgtccttc cgcgcgaaag cccgtcagga
     2161 cttgtgaaag gggatggtca tgaataacac cgtcgagacc gcaatcaaaa tccgtccctt
     2221 ccgcgtcgac attccggaag acgaactggc cgacctccgc cgacgcattg cagcgacgcg
     2281 gtggccggaa agggagaccg tcgcagacga gtcacagggc gtgcagctct cgacgacgca
     2341 ggagcttgtg cgctactggg gcaccgagta cgacttccgg aggttcgagg cgaggctgaa
     2401 tgcgctacct cagttcatca cggagatcga cggactcgac atccacttca tccacgtcaa
     2461 gtcaccgcac gagaacgcgt tgccgctgat catgaccacg gctggcccgg ctcagtcatc
     2521 gagctgctcg agaccgtcgg cccgctcacc gacccgacca cccacggcgg ccgggccgag
     2581 gacgccttcg acctggtgct gccgtcgctg cctggctacg gct
//
LOCUS       DASVXZ010000400         3710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1566880, whole genome shotgun sequence.
ACCESSION   DASVXZ010000400 DASVXZ010000000
VERSION     DASVXZ010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3710
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566880"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VF788_08240"
     CDS             complement(<1..264)
                     /locus_tag="VF788_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934167.1"
                     /translation="MTTRIAPRKQSAGVGRGLGADLLAVGSAALLVAVAAVIGAWLLD
                     QGVPLHVDAPPLGAQWLPHIGPGTVAAVLIALLVVMRGPELAAR"
     gene            387..1793
                     /locus_tag="VF788_08245"
     CDS             387..1793
                     /locus_tag="VF788_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020658979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX8934168.1"
                     /translation="MIFHQYQLSCLSLFSYLVGDESTGRAVVVDPQRDISQYLADAET
                     AGLHIERVIETHVHADFLSGHLELAQATGAVISYGSVTKTDFAVDPLAHGQRLNLGEV
                     MLEIRHTPGHTPESISVVIWERTTDAAPWAVLTGDTLFIGDVGRPDLLSSSGWTAPDL
                     ARQLYRSLHEQLLTLPDGTRVFPAHGAGSSCGKALSKATSSTIGEQRAANYALRPMTE
                     DDFVEVVTQGQPVAPLYFAFAAEANRQHHELLDDHTAPRALDIGEVLALRDGGAAVVD
                     GRAPDVFASEHLKGSVNVGLDGRFAEYTGDVIRAGRPIVVVTDAGRETEARVRLARIG
                     FDDVAGYLPAVEQLLAQRPDLAATAARLPATDLAAWSAGEPGLQIVDVRNPGELAAGV
                     VPGARHIPLAALIDRLAELEATAPTVVYCASGYRSSIAASTLRASGFDTVAEMLGGFA
                     AWPAASLPVALIAQQDNG"
     gene            complement(1821..2681)
                     /locus_tag="VF788_08250"
     CDS             complement(1821..2681)
                     /locus_tag="VF788_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc permease"
                     /protein_id="HEX8934169.1"
                     /translation="MDEVQTLILGLIAGVTILLGLPLGRIRAPRHSRTTPGLRVLLNA
                     LAIGILIFIMWDLLTHAWETINATLDKVHEGEGSVATVIGFGALLFAGLGVGLLSLAG
                     YERWLTGEGPLPLLGPGAMAADELTLRTASPMTPARRLALLIAVGIGLHNFGEGLAIG
                     NSAAQGKIALATLLVTGFALHNATEGFGIVAPLASDTEQPGWGFLLLLGLIGGGPTML
                     GTLVGHQFSSEPVSLVFLTLAAGSILYVIIQLIAIALKGGHRALLYWGVWAGLVAGFA
                     TDMLLTAGGA"
     gene            complement(2870..3070)
                     /locus_tag="VF788_08255"
     CDS             complement(2870..3070)
                     /locus_tag="VF788_08255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934170.1"
                     /translation="MLGVDVDLARLTRGEGLDQEELVRVVDAAGSPEEEVALLATVAW
                     GNSSASASHSSRYVENFLFGLE"
     gene            3014..3184
                     /locus_tag="VF788_08260"
     CDS             3014..3184
                     /locus_tag="VF788_08260"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934171.1"
                     /translation="MVEAFSSGQAGEIHVNSEHFRTAMTWMPEVIAETPQIVNVEVGQ
                     DGWGRMGELSPR"
     gene            complement(3351..>3710)
                     /locus_tag="VF788_08265"
     CDS             complement(3351..>3710)
                     /locus_tag="VF788_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005455927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX8934172.1"
                     /translation="PWVSILFTSAIAVVLVSFVPLAGLAGTTSLLLLAVFTLVNIACL
                     VLRRDTAEHDHFRAPAWSPWLGALLCAFLATPLSGRNPQDYLLAGVLLAVGILLWLVN
                     RWFVGKREFDPTKSSGN"
BASE COUNT          698 a         1215 c         1205 g          592 t
ORIGIN      
        1 ccgagcggcc agctcaggtc cgcgcatcac gacgagcagc gcgatgagca ccgcagcgac
       61 cgttcccggc ccgatgtgcg gcagccactg cgcccccagc ggcggggcgt ccacatgcag
      121 cggcacccct tggtcgagta accaggcgcc gatcaccgcc gccaccgcga ccagcagcgc
      181 ggcgctcccc acagctagca ggtcggcgcc gagaccgcgg cccacaccgg ccgactgctt
      241 gcgcggcgcg atcctcgtcg tcacagcggc tacctccgaa ctcggtggcg aactggtccc
      301 cttgctcagc cggcaggtgg tgtcctcacc tgggcgacag gtataccggt atgagcaacg
      361 ctgcaccggt tcggacgggt gagaccatga tcttccacca gtaccagctc tcctgtctgt
      421 cgctgttcag ctacctggtg ggtgacgagt cgaccggccg ggcggtggtg gtcgatccgc
      481 aacgggatat ctcgcagtac cttgccgacg ccgagacggc tggcctgcac atcgagcggg
      541 tgatcgagac ccacgtccac gccgacttcc tctccggtca tctggaactg gcgcaggcaa
      601 ccggcgcggt gatctcctac ggcagcgtga cgaaaaccga cttcgcggtg gatcctctgg
      661 cgcacgggca gcggctgaat cttggtgagg tgatgctcga gatccggcac acccccgggc
      721 acacccccga gtcgatttcg gtggtgatct gggaacggac gaccgacgcg gcgccgtggg
      781 ccgtactcac cggtgacacg ttgttcatcg gtgacgtcgg acgtcccgat ctgctctcca
      841 gctccgggtg gacagcgccg gacctggcgc ggcagctcta ccgctcactg cacgaacagc
      901 tgctcacgtt gcccgatgga actcgggtgt ttccggcgca cggcgccggt tcgtcgtgcg
      961 gcaaggctct gtcgaaagcc acgtcctcga cgatcgggga gcaacgggcg gcgaactacg
     1021 ccctacgacc catgactgag gacgacttcg tcgaggttgt cacacagggc caaccggtgg
     1081 cgccgttgta cttcgcgttc gcagccgagg ccaaccgcca gcaccacgag ttgctcgacg
     1141 accacacggc gccgcgggcg ctggacatcg gtgaggttct cgctctgcgt gacggcggtg
     1201 cagcggtggt cgacggcaga gcgcccgacg tgttcgcctc agagcacctg aagggttcgg
     1261 tgaacgttgg gctcgatggc cgtttcgccg agtacaccgg tgatgtgatc cgggccggcc
     1321 ggccgatcgt ggtggtcacc gatgcgggta gggagaccga ggcgcgcgtg cggctggcac
     1381 gcatcgggtt cgacgacgtc gccggttacc tacctgccgt cgaacaactg ctggcgcagc
     1441 gtcccgacct cgccgccacc gcagcccggt tgcctgccac cgacctcgcc gcgtggtcgg
     1501 ccggggagcc agggctgcag atcgtcgatg tccgcaatcc gggcgagctg gccgccggcg
     1561 tcgtgcccgg cgctcggcat atcccgctcg ccgcactcat cgaccggttg gctgagctgg
     1621 aggccaccgc gccgaccgtc gtctactgcg cgagcggcta ccgctcgtcg atcgcggcct
     1681 ccacgctgcg ggccagtggg ttcgacacgg tggcagagat gctgggaggt ttcgccgctt
     1741 ggccggccgc cagcctaccg gttgcgctga tcgcccagca ggacaacggc tgagacgccc
     1801 ggttccatca ctgctagggc tcaggcgccg ccggcggtaa gcagcatgtc ggtagcgaac
     1861 ccggccacca atccggccca tacgccccag tagagcaggg cccggtgccc gcctttgagg
     1921 gcaatggcga tgagctggat gatcacatag aggatggagc cagcggccaa ggtcaggaaa
     1981 acaagactca ccggctcgct gctgaactgg tgacccacca gcgttccgag catggtggga
     2041 ccgccaccga tgaggccaag cagcaggaga aatccccatc cgggttgctc ggtgtcgctg
     2101 gccagcggcg ccacgatgcc gaatccctcg gtcgcgttgt gcagggcgaa gcccgtcacc
     2161 agcaaggtgg ccagcgcgat cttgccctgg gccgcgctat tcccgatggc gaggccctca
     2221 ccgaaattgt gcaagccgat acctaccgca atcagcagcg caagacggcg cgccggggtc
     2281 atggggctag ccgtacggag ggtgagctcg tcagcagcca tcgcacccgg gcccagcagc
     2341 ggaagcggcc cctcaccggt gagccagcgc tcgtaaccgg ccaggcttaa cagacccact
     2401 cccagcccgg cgaagagcaa ggcaccgaag ccgatcaccg tggcaacgct gccctcacct
     2461 tcgtgcacct tgtccagcgt cgcgttgatg gtctcccagg cgtgggtcag cagatcccac
     2521 atgataaaga tcagaatgcc gatcgcgagg gcgttgagca acactcgcag gcctggcgtc
     2581 gtacggctgt gacggggggc acggatccga cccaacggta gcccgagcag gatcgtgacg
     2641 cctgctatga ggccaaggat cagggtctga acctcatcca cgggcgatca acctggactt
     2701 ggcgtcggac agcatttaac cccctacccc tcgtgagctg tcagctttgc gtcaatgaat
     2761 aagatctgtc aagaacgctg gccggggatt accggaagca gcgaaaccgt gacgtccggc
     2821 aacatcggac ggtgattgcg tgtgcactga cagtgatcca tctggacaac tactcgagac
     2881 cgaaaaggaa attttcgaca tatcgcgatg agtggctggc gcttgccgac gagttccccc
     2941 aggcgaccgt agcgaggagg gcgacctctt cttcgggtga tcccgcagcg tcgacaaccc
     3001 gcaccagttc ttcctggtcg aggccttctc ctcgggtcaa gcgggcgaga tccacgtcaa
     3061 ctccgagcac ttcaggaccg cgatgacgtg gatgcccgag gtgatcgcgg agaccccaca
     3121 aatcgtcaac gtcgaggtgg gacaggacgg ctggggtcgg atgggtgagc tgtccccgcg
     3181 ctgaggcagg taggccatga tgagctgccc gttttcatgc ctgcccggat agtgatgaga
     3241 acgccaggct aacatcaacg tatattttag tatccgccat atctgatcga gcgccgctcc
     3301 gtgcagagtt ccggcgaata gagtgagaac aaaccggtac taatcgaaag tcaattaccg
     3361 gaggatttgg tcggatcgaa ctcgcgctta cccacaaacc atcggttgac caaccagagc
     3421 aggattccga ctgccagcaa cacacctgct agcagatagt cctggggatt ccggccggac
     3481 aggggggtgg ccaggaaagc acacagcagc gccccgagcc acgggctcca ggccggggcc
     3541 cggaagtgat cgtgctcggc tgtgtccctg cgcagcacca ggcaggcgat attgaccagc
     3601 gtgaagactg cgagcagcaa cagcgaagtg gtgcccgcca agccggccag cggaacgaag
     3661 ctgaccagca ccacagcgat cgcactggtg aataagatcg acacccaggg
//
LOCUS       DASVXZ010000401         6014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_559304, whole genome shotgun sequence.
ACCESSION   DASVXZ010000401 DASVXZ010000000
VERSION     DASVXZ010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6014
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_559304"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1112)
                     /locus_tag="VF788_08270"
     CDS             complement(<1..1112)
                     /locus_tag="VF788_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX8934173.1"
                     /translation="MAHTTNGSQPQIREGSARFASVDPRTGEIVDYHQIYDEAAVCAA
                     VARAREAAAWWSGLGFAQRRRWLLSWRSALTRRIDELAGLITAETGKPRDDARLECVL
                     VVAHLDWAARNAERVLRRRRVGSGLLMFQEASTVEYQPHGVIGVIGPWNYPAHTPMGS
                     IGYALAAGNAVVFKPSELTPGVGRALAESLAAVVPEHPLLQVVTGFGETGAALCRAGV
                     DKLVFTGSTAIAKKVMAACAETLTPVVVECGGTDALLVDADADLVVAADAAVWGAMAN
                     AGQTCVGVERVYVVDDVAEELTERIVAQTRRLRVGGQPSADLGPITRAEQVDVIRDHL
                     TDAVTRGAKAVVGGAESVRPPFVEPVVLTDVPEISTA"
     gene            1303..2280
                     /locus_tag="VF788_08275"
     CDS             1303..2280
                     /locus_tag="VF788_08275"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEX8934174.1"
                     /translation="MISHSIDIHGARVYAIPMATRFRGITIREGMLVEGPAGWGEFCP
                     FREYDDREASNWLTTAVEAATVGWPEPVRHRVPINCTVPAVDPERAHEIVTASGCATA
                     KVKVADHPASLGEDLARIEAVRDALGPHGHLRVDANGRWDTDTAVAVIPQLDKAAGGL
                     QYVEQPCRTIDELAMVRRKVTVRIAADESIRRAEDPLQVAVAGAADVAVIKCAPLGGV
                     RRALQVAEAAGLPCVVSSALETSVGLAAELALAGALPELDFACGLGTLSLLRGDVVPD
                     ADSLLPTSGYLPVPRTPPAPDPALLDTYELTDPSQVAWWRARLRRVSCE"
     gene            complement(2288..2947)
                     /gene="nucS"
                     /locus_tag="VF788_08280"
     CDS             complement(2288..2947)
                     /gene="nucS"
                     /locus_tag="VF788_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010305297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease NucS"
                     /protein_id="HEX8934175.1"
                     /translation="MRLVIARCQVDYVGRLTAHLPMAPRLLLVKADGSVSVHADGGAY
                     KPLNWMSPPCTLVEHAGRWTVSNRAGEQLIIEIDEIVHDSRHELGVDPGLVKDGVEAH
                     LQALLADHVTTLGKGWTLVRREFPTAIGPVDLMCRDADGVSVAVEIKRRGEIDGVEQL
                     TRYLELLNRDSLLAPVRGVFAAQQVKPQARTLAEDRGIRCVVLDYDALRGADSDEFRL
                     F"
     gene            3197..4213
                     /locus_tag="VF788_08285"
     CDS             3197..4213
                     /locus_tag="VF788_08285"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF012425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEX8934176.1"
                     /translation="MSPNVSMVNQGMSVMEQYTGVVPGHRRAHARGHGFSGYFESTPE
                     VAELTMAEHLQGGRVPVIVRLSNAAGSPYAPDLNSPRRGATLGLAIAFELASGARTTW
                     GAPNISSFPARTAQEFITLTTALRRGKSTHQPNLFRLLAFAIRNWYAIPGLKSILSHP
                     PVRSFAATQFNGLHAYYLVRANGTRQAFRYHWVPTIEGQRNVTRADAELWPPQYLIEE
                     FKQRLKASPVRWDLVFDLAKDGDPTNDQTARWPASRPKLKAGVLTLTEEHPDQDAVDR
                     MVFDPTNLPPGIECSDDPVLAYRSLIYQESHARRTSEPRPVTDLLSDACPLGRGTPAV
                     SRDR"
     gene            complement(4197..>6014)
                     /locus_tag="VF788_08290"
     CDS             complement(4197..>6014)
                     /locus_tag="VF788_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein meaA"
                     /protein_id="HEX8934177.1"
                     /translation="PDHELARGEVGKVGVPVSHIGDMRALFDGIPMAEANTSMTINAT
                     AMWLLALYTSVAQEHGVDPAQLSGTTQNDIIKEYLSRGTYVFPPGPSLRLITDMVVYA
                     VKHIPRWNPINVCSYHLQEAGATPVQEVAYSMCTAIAVLDSVRDCGQVAPGEFAQVVG
                     RMSFFVNAGVRFVEEMCKLRAFSRLWDETCRDRYGVTDPKLRRFRYGVQVNSLGLTEP
                     QPENNVQRIVLEMLAVTLSRDARARAVQLPAWNEALGLPRPWDQQWALRMQQVLAYET
                     DLLEYEDLFDGSRVVEARVAEIAAGARAEIDHVQAMGGAIAAVESGYMKSQLVSSLAA
                     RRRRIEDGEDVIVGVNRFTETDLSPLQAEGAAAVETIDPEGESRLIEAISTWRADRDP
                     VAVDDALRRLVEAAKTDANLVEPSMACARVGVTTGEWAGALRGVFGEYRAPTGITGAS
                     VASAAGDAIGRVRDRVRAAGEERGGRLRMLVGKPGLDGHSNGAEQVAVRARDVGFEVV
                     YQGIRLTPAEIVAAAVQEDVHVVGLSVLSGSHLEVVPAVVEGLRAAGAGDIPVVVGGI
                     IPPEDADALRAHGVAKVFTPKDFELTDIMAQIVDLICPG"
BASE COUNT         1012 a         2182 c         1862 g          958 t
ORIGIN      
        1 gccgtggaga tctccgggac gtcggtcagc accactggct ccacgaaggg cgggcgaacc
       61 gactccgcgc caccgaccac cgccttagcg ccgcgggtta ccgcgtcagt gaggtgatca
      121 cgaataacgt cgacctgctc agccctggtg atcggaccta ggtccgcact gggctggcca
      181 ccgactcgca gtcgccgagt ttgggcgacg atccgctcag tcaattcctc ggcgacgtcg
      241 tcgacgacgt acacgcgctc cacgccgacg caggtctggc cggcattggc catggcaccc
      301 cagaccgcgg catcggcagc gacgacgagg tcagcgtcgg cgtccaccag cagcgcgtcg
      361 gtgcccccac actcgaccac caccggggtc agcgtctcgg cacaggccgc catcaccttc
      421 ttcgcgatgg cggttgatcc ggtgaacacc agcttgtcca caccggcccg gcacagcgcc
      481 gctccggtct ccccgaaccc ggtgacgacc tgcagcagcg ggtgctcagg caccactgca
      541 gcaaggctct cggccagcgc gcggcccact cctggggtca gctcgctggg cttgaacacc
      601 acggcgtttc cggcggcgag cgcgtagccg atcgagccca tcggggtgtg cgcgggatag
      661 ttccacggac cgatcacccc gatcacgccg tggggttgat actccaccgt cgacgcctct
      721 tgaaacatca gcaagccgga tccgacccgg cggcggcgca acacccgctc ggcgttgcgc
      781 gcggcccagt ccaggtgtgc aaccacgagg acgcactcca gccgcgcgtc gtcccgtggc
      841 ttgccggtct cagctgtgat cagtccggcc aactcgtcga tccgtcgggt cagcgccgag
      901 cgccacgaca gcagccagcg gcggcgctgg gcgaacccga gtccactcca ccacgcggcc
      961 gcctcccgag cgcgagcgac agccgcacac acggccgcct cgtcatagat ctggtggtag
     1021 tcgacgatct caccggtccg cgggtcaacc gacgcgaacc gggcagatcc ctcgcggatc
     1081 tgcggctggc tgccgttcgt ggtgtgagcc atctattgat acccccgcct accgcatcgg
     1141 cctacaccgc agcctagggg tccgaacaac tgcagctcta cgctccgcgt accggcaact
     1201 caccgtagtt ccccgtcacg cagcggattc tcttgcggtc agcgtggtcg tattgttccg
     1261 ggtctggtgc gcagccgcct acaccgacga ggacacaacg acatgatcag ccacagcatc
     1321 gacattcacg gtgcccgcgt ctacgccatc cccatggcga cccggttccg gggtatcacg
     1381 atccgcgagg ggatgctggt cgaagggcct gccggatggg gcgagttctg cccgttccgc
     1441 gagtacgacg accgcgaggc atcgaactgg ttgaccaccg cggtcgaggc cgcgacggtc
     1501 ggctggcccg aaccggtccg gcatcgggtg ccgatcaact gcaccgttcc ggcggtggac
     1561 ccggagcggg cccacgagat cgtgacggct tccggctgtg ccacggcgaa ggtcaaggtc
     1621 gccgatcatc ctgcctcact cggtgaggac ctcgcccgca tcgaggcggt ccgcgatgcg
     1681 ctcggcccgc acggccacct ccgggtagac gccaacggac ggtgggacac cgacacggcc
     1741 gtggcagtga tcccgcagct cgacaaggcc gccggcggct tgcagtacgt agaacagccc
     1801 tgccggacca tcgacgaact cgccatggtg cgcagaaagg tcaccgtgcg catcgcggcc
     1861 gatgagtcca tccgccgtgc cgaagacccg ctccaggtcg cagtcgcggg cgcggccgat
     1921 gtcgcggtga tcaaatgcgc gccactgggc ggggtgcgcc gcgcactgca ggtggccgag
     1981 gctgccgggc tgccgtgcgt ggtgtcctcc gcgctggaga ccagcgtcgg gttggccgcc
     2041 gaactcgcgt tggcgggtgc gctacccgag ctggacttcg cctgcggcct gggcaccctg
     2101 tctctgctgc gcggcgacgt ggtgcccgat gccgactcgc tgctgcctac cagcggctac
     2161 ctgccggtac cgcgtacccc acccgcacct gatcccgcgc tgctggacac ctacgagttg
     2221 accgacccga gccaggtggc gtggtggcgg gcacgcctgc gccgggtctc ctgcgagtag
     2281 gcgcgggtca gaaaagccgg aactcgtcgg agtcggcacc gcgcagagcg tcgtagtcca
     2341 gcacgacaca gcggatgcca cggtcctcgg ccagggtgcg ggcttgcggc ttgacctgct
     2401 gggcggcgaa cacgccgcgc accggagcca gcagcgagtc acggttgagc aactccaggt
     2461 accgggtgag ctgctccact ccgtcgatct cgccccgcct tttgatctcc accgcgaccg
     2521 ataccccgtc agcgtcccgg cacatcaggt cgaccggtcc gatcgcggtg ggaaactccc
     2581 gccgaaccag tgtccagccc ttgcccaagg tggtgacatg gtcggcgagc agggcctgca
     2641 agtgcgcctc aacgccatcc ttgaccagcc cgggatccac ccccagctcg tggcgtgaat
     2701 cgtgcactat ctcgtcgatc tcgatgatca actgctcacc ggcccggttg ctgactgtcc
     2761 agcgcccggc gtgctcgacg agcgtgcacg gcggactcat ccagttcaac ggcttgtatg
     2821 cgccgccgtc agcgtgcacg ctcaccgatc catcggcctt gaccagcagc aaccgcggtg
     2881 ccatcggcag atgcgcagtc agccgtccca catagtccac ctggcaccga gcaatcacaa
     2941 gccgcacggt gagcagcgta gggggccgct gtgagctccg cacactgcct ctaccccacc
     3001 agcgaccgtg cgccgtgccg caacgcccat gcccgacagt aacgcagcag gactctcaaa
     3061 gatcaccaga cgtatttctg ggcggtatgt gcgtctcgtc ttcatcagta ggtcgtggac
     3121 gtgtcggtgg cgaccactgc agtccgagtg tcggtaaccc ttgcttagcc acaaaattgt
     3181 catcgaagga gacccgatga gccctaacgt ctcgatggtg aatcagggaa tgtccgtcat
     3241 ggaacagtat acgggagtgg tgccgggtca ccgtcgagca catgcgcgtg gtcacggatt
     3301 ctctggttac ttcgagtcca cgcccgaggt ggccgagctg accatggccg agcatctcca
     3361 aggtggccgg gtccctgtta tcgtgcgact gtcgaacgcg gcgggtagcc cttatgcacc
     3421 cgatctgaac tcaccgcgcc gcggggcaac gctcggcctg gccatcgcct tcgaactggc
     3481 ttcaggagcc cgcacgacct ggggcgcacc gaacatttcg tccttcccgg cacgaacggc
     3541 ccaagaattc atcacgctca ccaccgcgct acggcgcggc aagtccactc atcagcccaa
     3601 cttgtttcgc ttgctcgcgt ttgccatccg aaactggtat gcaattccag gcctgaaatc
     3661 gatactcagc cacccacccg tgcggagttt cgcggcaacg cagttcaatg gtttgcacgc
     3721 ttattacctg gtacgggcca atggcacacg gcaggccttt cggtatcact gggtacccac
     3781 catcgagggc cagcggaacg tcaccagagc ggacgccgaa ctgtggcctc ctcaatacct
     3841 gatcgaagaa ttcaaacagc gactcaaggc aagcccggtg cggtgggatc tcgtcttcga
     3901 cctggccaag gacggcgatc ccaccaacga ccagacggcc cggtggccag cgtcgcgtcc
     3961 gaaactcaaa gcaggtgtcc tcaccctgac cgaggagcac cccgatcagg acgccgttga
     4021 ccggatggtc ttcgacccca ccaacctgcc gcccggcatc gagtgctctg acgacccagt
     4081 gctggcctac cggtccctga tctatcagga atcccatgca cgccgcacca gcgagccgcg
     4141 gccggtcacc gacctcctca gcgacgcctg ccccctcggc cgtggcacac ccgcggtcag
     4201 ccgggacaga tgagatccac gatctgggcc atgatgtcgg tgagctcgaa gtccttcggg
     4261 gtgaagacct tggctacccc gtgagcgcgg agtgcatcgg cgtcctcggg gggaatgatc
     4321 ccgccgacca ccaccggaat atcgccggcg cctgcggcgc gcagcccttc gactaccgcg
     4381 ggcaccactt ccaggtgcga gccggagagc accgatagcc cgaccacgtg cacgtcctcc
     4441 tgcaccgcgg ccgcgacgat ctccgccggg gtgagccgga tgccctggta gaccacctca
     4501 aagccgacat cccgggcccg gaccgccacc tgctcagcac cgttggagtg cccatcgaga
     4561 ccgggttttc cgacgagcat ccgcagccgc ccaccccgtt cctcaccagc ggcacgcacc
     4621 cggtcccgaa cccgtccgat cgcgtcaccg gccgcgctcg ccactgacgc gccggtgatc
     4681 ccggtcggcg cccggtactc accgaacacc ccgcgcaggg caccggccca ctccccggtg
     4741 gtgacgccta cccgagcgca cgccatcgac ggctccacca ggttggcgtc ggtcttggca
     4801 gcctcgacca gccgccgcag tgcatcgtcc accgccaccg ggtcgcgatc cgcccgccag
     4861 gtgctgatcg cctcgatcag ccggctctcg ccttccgggt cgatggtctc gaccgccgcg
     4921 gccccttcgg cttgcagcgg gctgaggtcg gtctcggtga accggttgac cccgacgatc
     4981 acgtcctcgc cgtcctctat ccgccggcgc cgcgccgcca gcgatgacac cagctgcgat
     5041 ttcatgtaac cggattcgac ggcggcgatg gctccgccca tggcctgcac gtggtcgatc
     5101 tccgcccggg cacctgccgc gatctcggcg acccgggcct ccaccacccg ggagccgtcg
     5161 aagaggtcct cgtactccag caggtcggtc tcgtacgcca gcacctgctg catccgcagc
     5221 gcccactgct ggtcccaagg tcgcggcagg cccagcgcct cgttccacgc cggcagctgc
     5281 actgcgcggg cccgggcgtc gcgggacagc gtgaccgcga gcatttccag cacgatccgc
     5341 tggacattgt tctccggctg cggctccgtg agccccagcg agttcacttg cacgccataa
     5401 cggaaccggc gcagcttggg gtcagtgacg ccatagcgat cgcggcaggt ctcgtcccac
     5461 agccggctga aggcgcgcag cttgcacatc tcctcgacga agcgcacgcc ggcgttgacg
     5521 aaaaacgaca tccgccccac tacctgcgcg aactcaccag gcgcgacctg cccgcaatcg
     5581 cgcaccgagt ccagcacggc gatcgcggtg cacatcgagt aggcgacttc ctgcacgggg
     5641 gtcgcacccg cctcctgcag gtggtagctg cagacgttga tcggattcca tctcgggatg
     5701 tgcttgaccg cgtagaccac catgtcagtg atcaaccgca ggctcggccc gggcgggaag
     5761 acgtaggtcc ctcgggacag gtactccttg atgatgtcgt tctgcgtggt gcccgagagc
     5821 tgcgccggat cgaccccgtg ctcctgcgcg accgaggtgt agagggccag cagccacatc
     5881 gcggtggcgt tgatcgtcat cgaggtgttg gcctcggcca tcgggatacc gtcgaacagg
     5941 gcccgcatgt caccgatgtg gctcaccggc acaccgacct tgcccacttc accccgggcc
     6001 agctcatggt ccgg
//
LOCUS       DASVXZ010000402         4593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_223003, whole genome shotgun sequence.
ACCESSION   DASVXZ010000402 DASVXZ010000000
VERSION     DASVXZ010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223003"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..991)
                     /locus_tag="VF788_08295"
     CDS             complement(<1..991)
                     /locus_tag="VF788_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEX8934178.1"
                     /translation="MSDTTARDAAPGGEVRTELKRVIGPKLLFFFVIGDILGTGIYAL
                     TGSVAGEIGGALWVPFVGAFLVAFLTAFSYLELVGKYPRAAGAALYTNRAFGIPFLTF
                     IVAFTVMSSGITSASSAAVAFGQTYLKAFITLPTWAVATTFIVLLALINFRGVGESLK
                     ANVVLTCIELSGLLIIIAIGVYAIGSGQGEPSRLVQVDTADSGVLLAITSATALAFFA
                     MVGFEDSVNMAEECREPTRIFPRAMLLGMASAGLIYVLVAVSCSLLVPAERLAALQSD
                     ALLEVVKIGAPSFPLGLFAAIGLFAVINSALINMLMASRLVYGMAGERIIPRVL"
     gene            1107..2435
                     /locus_tag="VF788_08300"
     CDS             1107..2435
                     /locus_tag="VF788_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015801824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton exchanger"
                     /protein_id="HEX8934179.1"
                     /translation="MYVPRRFPVPLLLAVAFAVPGAYLGAADYLGLPHPDLPPALAAL
                     VFGIAIIGAAFVLSWAAEAAQVDISAGLALALLALLAVLPEYAVDFVFTFQAGQTYQQ
                     FGSCVPRPDGSNPCSLALANMTGANRVLVGVGWPLVVLIASLAALRARRRGGHDSPSS
                     HPGRVALAPTMSAEVVFLGIATLYSLTIPLRHTLTMVDAAVLVVIFVAYAWRLAQAPA
                     KEPDLAGVAQWVGDKPPGSRRVWVGAMFALAAIVILCTAEHFAEGLVATGGQLGVDQF
                     VLVQWVAPLASESPELLVACLYAWRLKASDSLGALLSSKVNQWTLLVGTIPLVFALSA
                     TTTDGLPLDTQQRFELLLTAAQSVFAVSILVNLCLTVWGATTLLVLFAVQFVTSVTLS
                     PEINQIVIIALSAVYGVLAAGQFLRKRHDTARILREGLITPFPALSETPR"
     gene            2511..3017
                     /locus_tag="VF788_08305"
     CDS             2511..3017
                     /locus_tag="VF788_08305"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934180.1"
                     /translation="MLDLGCGTGEHTIHLAALGYDVRGVDSSELAIEQARANAAEREV
                     TVRFEVADALRLRDEVTYDTVIDSALFHIFDLPDRDRYVRSLYRACRPDALVHVLALS
                     DTGPGFGPQISDTVIRNAFGDGWALEDVQSSQYRGVILSDEHATALGHPIGDLVDLPA
                     WLARIRRI"
     gene            complement(3032..3841)
                     /locus_tag="VF788_08310"
     CDS             complement(3032..3841)
                     /locus_tag="VF788_08310"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX8934181.1"
                     /translation="MGRGALDKVRGGFTFAEGPVWIASKGVLLFSDIPADTINQLQPP
                     AAVTAIRRPSGAANGLGIDPQGRLIASEGDNRRVSRTLTDGTVVTVADRWQGKRLNSP
                     NDNITRSDGTVYFTDPPYGLPSGQARELDFQGVYRVDPAGTLHLESMDMDRPNGVALS
                     PDEKTLYVDDSAAGLVRRFPVRPDGSLGAPTRFVSATGGDGMAMDDAGNLYVATNAGV
                     QVYQPNGTPWGSIPVPEVPSNCTFGGSDRKTLYITAKTSLYRVTLKVPGLP"
     gene            4331..>4593
                     /locus_tag="VF788_08315"
     CDS             4331..>4593
                     /locus_tag="VF788_08315"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEX8934182.1"
                     /translation="MPRTAILYARSNRRENLDRQVRELEDWCDRAGVVPISTVAEVAI
                     GVRASRRCRQVLTDVAAGLADLVLIRDVSRLSEDAAQLGQIIN"
BASE COUNT          734 a         1493 c         1557 g          809 t
ORIGIN      
        1 ccaggacccg agggatgatc cgctcgccgg ccatgccgta gaccagtcta ctggccatta
       61 gcatgttgat caatgccgag ttgatgaccg caaagagtcc gatggcggcg aacaagccca
      121 gtgggaagct gggcgcgccg attttgacga cctcgagcag tgcgtcactt tgcagcgcgg
      181 caagccgctc ggcggggacc agcagcgagc agctgaccgc caccagcaca tagatcagcc
      241 ctgccgacgc catcccgagc agcatcgccc gcgggaagat ccgagtcggt tccctgcact
      301 cttcggccat gttcaccgag tcctcgaaac cgaccatcgc gaagaaggcc aacgcggtgg
      361 cggaggtgat cgccagcagt accccggagt ctgcggtatc gacctggacg agcctgctcg
      421 gctcaccctg gcccgagccg atcgcgtaga cgccgatcgc gatgatgatg agtagacccg
      481 acagctcgat gcaggtgagc accacgttgg ctttcagcga ctcaccaaca ccccgaaagt
      541 tgatcagcgc gagcagcacg atgaaggtgg tcgcgacggc ccaggtcggc agggtgatga
      601 acgccttgag gtacgtctgg ccgaatgcca ccgcagccga ggaggcgctg gtgatgcccg
      661 aactcatcac ggtgaaggcg acgatgaagg tcaggaacgg gatcccgaac gcccggttgg
      721 tgtacagcgc agccccggcc gcccgggggt acttaccgac cagctccaag tagctgaacg
      781 cggtcaggaa ggccaccagg aacgccccga cgaagggcac ccacaaggcg ccgccgatct
      841 ctcccgccac gctgccggtc agcgcgtaga tcccggtacc gaggatgtca ccgatcacga
      901 agaagaacag cagcttcggc ccgatgaccc gtttgagttc ggtccgaacc tcgccgccag
      961 gagccgcatc ccgtgccgtt gtatcgctca taacacacag tgttcatccc acacagtgtg
     1021 gcggtggtat acgcgctgag tcaccaccac ggacgagcga ggtgggtttg ccggtgggtt
     1081 tgcggggggc gctgcccggg catgaggtgt acgtgccgcg ccgcttcccg gtcccgctac
     1141 tgctggcagt cgccttcgct gtgccgggcg cctacctcgg agcggcggac tacctgggct
     1201 tgccgcatcc cgatctgccg ccggcgctgg ccgcgctggt gttcggtatc gcgatcatcg
     1261 gggcggcgtt cgtcctgtcc tgggctgccg aagccgccca ggttgatatc agtgccgggc
     1321 tggcgctcgc actgctggcc ttgctggccg tgctcccgga gtacgccgtc gacttcgtct
     1381 tcacctttca ggccggtcag acctatcagc agttcggaag ctgcgtacca cgaccggacg
     1441 gcagcaatcc ctgctccctc gcgctggcca acatgaccgg tgcgaaccgg gtgctcgtcg
     1501 gtgtcggctg gccgctggtg gtgctcatcg ccagcctggc cgcgctacgg gcccgccgac
     1561 gaggcggtca cgacagcccg tcgagccatc cggggcgggt cgcgctggcc ccaacgatgt
     1621 cggccgaggt ggtgttcctc ggcatcgcca cgctgtactc gctgaccata ccgctgcggc
     1681 acaccctgac gatggtggac gccgcggtgc tcgtggtgat cttcgtggca tacgcatggc
     1741 ggctggccca ggcccccgct aaggaaccgg acctggcggg agtcgcccag tgggtaggag
     1801 acaagccacc tggttcgcgg cgggtctggg tgggagcgat gttcgcgctc gccgcgatcg
     1861 tcatcctctg caccgccgag cacttcgccg aaggcctggt ggcgaccggc ggacagctcg
     1921 gcgtcgacca gttcgtgttg gtgcagtggg tggctccgct ggccagcgag tcgcctgagc
     1981 tgctggtcgc ctgcctgtac gcgtggaggc tcaaggcctc ggactcgctc ggtgcgctgc
     2041 tgtccagcaa ggtcaaccag tggacgttgc tggtcggcac gattccgctg gtcttcgcgc
     2101 tgtccgcgac caccaccgac ggcctgccgc tggacactca gcagcgcttc gagttgctgc
     2161 tcacggccgc gcagtccgtg ttcgcggtga gcattctggt gaacctgtgc ctgaccgtgt
     2221 ggggggcgac gacgttgttg gtgctgttcg cggtgcagtt cgtcaccagc gtcacgctct
     2281 cccccgagat caaccagatc gtgatcatcg cgctgtccgc cgtgtacggc gtgctggctg
     2341 ccggacaatt cctgcgcaag cggcacgaca cggctcggat cctgcgtgag gggctgatca
     2401 ccccgttccc cgcgctatcg gagactcccc gctgagactc cccgtgctcc gcccccttga
     2461 cctgaagtcc tcttgagctt caatggtcgg agaatggttc ctactactgc gtgcttgatc
     2521 tcggctgcgg caccggggag cacaccatcc acctcgccgc gctcggctac gacgtccgcg
     2581 gtgtcgattc ctcggagctt gcgatcgaac aggcccgtgc caacgccgcc gagcgcgagg
     2641 tcacggtccg tttcgaggta gccgatgcgc tgcggctgcg agatgaggtg acctacgaca
     2701 ccgtcatcga cagcgcgttg ttccacatct tcgacttgcc ggaccgtgac cggtacgtgc
     2761 gcagtctgta tcgcgcctgc cgcccggacg cgctggttca cgtcctcgcg ctgtccgaca
     2821 ccgggccggg tttcgggccg cagatcagcg acacggtgat ccggaatgcc ttcggcgacg
     2881 ggtgggctct ggaagatgtg caatcaagcc agtaccgcgg cgtcattctc agcgacgagc
     2941 acgccaccgc acttggtcac ccgatcggcg atctggtgga cctccccgca tggctcgccc
     3001 ggatccgccg gatctgacag aaccgttgca gttacggcag accggggacc ttcagcgtca
     3061 cgcggtacag cgatgtcttg gccgtgatgt agagcgtctt acggtccgaa ccaccgaatg
     3121 tgcagttgga gggcacctcg gggacgggga tggagcccca gggcgtgccg ttcggttggt
     3181 acacctgcac gccggcgttg gtcgccacgt acaggttgcc cgcgtcatcc atcgccatcc
     3241 cgtcgccacc cgtagcggac acgaacctcg tgggcgcccc gagggagcca tcgggcctga
     3301 ccgggaatct gcgcaccagc ccggcggcgg agtcgtccac gtaaagcgtc ttctcgtccg
     3361 gggagagggc caccccgttg gggcggtcca tgtccatcga ctcgaggtgc agcgtgcccg
     3421 ccgggtcgac ccggtacacg ccctggaagt cgagctcgcg cgcctgaccg gatgggagac
     3481 cgtagggggg atcggtgaag taaacggtgc cgtcgctgcg ggtgatgttg tcgttgggcg
     3541 agttgagtcg cttgccttgc cagcgatccg ccaccgtcac gacggtgccg tcggtcaggg
     3601 tgcgcgacac ccgccggttg tcgccttcgc tggcgatgag ccggccctgg gggtcgatcc
     3661 cgagtccgtt ggctgcgcca ctcggtctgc ggatggcggt gaccgcggcg ggtggctgga
     3721 gctggttgat cgtgtcggcg ggtatgtcgg agaacaggag cacgcctttc gacgcgatcc
     3781 acaccggacc ttcggcgaac gtgaacccgc cgcgaacctt gtcgagagcg ccccgtccca
     3841 tcagaggatc cagtgcggtg gcggcattgc ccgccgtatc cgccctcgag tccttcgcgg
     3901 atcccgtgga ggtgccacat gccgggcaga gaactgcggt cgcgagcgca atgcctgcga
     3961 cgctgacgcg tgtgggggtc cccatgcggc gcgcagccta cccccaggcg ccggcggacc
     4021 cggacgacgc gctggatcct gccaatgacc ggcatgctgc gagcccaagg tgaagctgcg
     4081 ccgggtcgaa gccggttcga tactggatgc ggtcgcttag cggaggggtc gggggcatgt
     4141 gtgggtaagg acgatcggcg cctctacacc tgcccgcaat gtaacggttc taggtagtgg
     4201 tgaagtggaa acgggctgac gtggacgagg aacaggagat agcgacgacg gagctgtgcc
     4261 ccacgtgcga tggctcaggg cagattttgg gaccttcgac ataaccgtgg cgctgtctca
     4321 cactgatcgc gtgccgcgta ccgcgatcct ctacgctcgg tcgaatcgtc gggagaacct
     4381 cgaccggcag gtgcgggagc tcgaggactg gtgtgaccgc gctggcgtcg tgccgatcag
     4441 cacggttgcc gaggtcgcga tcggtgtccg agcgtcacgt cggtgcaggc aggtcctgac
     4501 ggacgtggca gctggcctcg cggatcttgt attgatccgg gatgtttcgc gcttgtctga
     4561 ggacgccgcc cagcttgggc agatcatcaa cga
//
LOCUS       DASVXZ010000403         2584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_312053, whole genome shotgun sequence.
ACCESSION   DASVXZ010000403 DASVXZ010000000
VERSION     DASVXZ010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312053"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..898)
                     /locus_tag="VF788_08320"
     CDS             complement(<1..898)
                     /locus_tag="VF788_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8934183.1"
                     /translation="MTTMERTASPMVQPRSKREIYTVMSGLLIAMLLAILDNLVVGTA
                     MPTIVGELGGLAHLSWVVTAYALATAVSTPVWAKLGDLYGRKGVFMASIMLFLAGSAL
                     AGVSQNMSQLIGFRGLQGLGAGGLMVGAMAIIADLVPLRERGRYQGLMTAVMPVAFIG
                     GPLLGGFLTDNLSWRWAFYINLPLGVLALVVVALTMHLPGRREGQVRIDWRGAGLLAA
                     GIAALTLLTSWGGTQYAWSSAPIIILGVVTVAALAAFVALERQVTEPILSLELFRSRN
                     FSAATILTLFTGFALFGAMTFLP"
     gene            888..1574
                     /locus_tag="VF788_08325"
     CDS             888..1574
                     /locus_tag="VF788_08325"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934184.1"
                     /translation="MVVIDVLRRLLDDRLVNSGVRYQLLAGRQVSWPVIRGGLGRMDE
                     RRTDTREAIRSVALELFAEQGYEKTSLREISERLGVTKAAVYYHFKTKEEILLSLIED
                     FLAQIDDLADWAQSRPGGAETRHEVLRRYSDMLDGRTTQLARFLHEGQAAIRDLAAGV
                     DMRKRLDRLIGTLVTSEQSLTAQLRARLAVIALHIGTFTARDIEASEAQRRDTALQIA
                     MEIIGTAGNP"
     gene            complement(1619..>2584)
                     /gene="dnaA"
                     /locus_tag="VF788_08330"
     CDS             complement(1619..>2584)
                     /gene="dnaA"
                     /locus_tag="VF788_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEX8934185.1"
                     /translation="AAAVAVSEAPARAYNPLFVWGESGLGKTHLLHAVGHYAQRLFPG
                     MRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFHT
                     FNTLHNANKQIVISSDRPPKGLGTLEDRLRTRFEWGLITDIQPPELETRIAILRKKAA
                     GDRLAAPDEVLEFIAARIERNIRELEGALIRVTAFASLNRQPVDTQLAEIVLRDLIPD
                     EAAHEIAAPNIMAVTAEFFGVTMDDLCGPGKTKHVAQARQISMYLCRELTDLSLPRIG
                     QTFGGRDHTTVMHADRKIRKEMAERRRTYDQVQELTSRIKQRARS"
BASE COUNT          463 a          834 c          860 g          427 t
ORIGIN      
        1 gcggcaggaa cgtcatcgct ccgaacaagg cgaacccggt gaacagcgtg aggatcgtag
       61 cggcgctgaa attgcggctg cggaacagct ccagcgacag gatcggctcg gtgacctggc
      121 gctcgagggc gacgaacgcg gccagcgccg ccaccgtgac cacgccgaga atgatgatcg
      181 gcgcggagct ccacgcgtac tgggtaccgc cccagcttgt gagcagggtc agcgccgcaa
      241 tcccggcggc cagcagaccg gcacctcgcc aatcgatccg gacctggccc tcgcggcgtc
      301 ccggcaggtg cattgtcagg gcgacgacga ccagggcgag cacgcccagc ggcaggttga
      361 tgtagaacgc ccaccgccag ctcaggttgt cggtgaggaa gccgccgagc agcggaccgc
      421 cgatgaacgc caccggcatc accgcggtca tcagcccctg gtagcggccg cgctcccgca
      481 gcggcaccag atcagcgatg atcgccatgg cgcccaccat cagaccaccg gcgcccaggc
      541 cctgcagccc gcggaacccg atcagctggc tcatgttttg ggacacacca gccagcgcgg
      601 acccggccag gaacagcatg atcgaggcca tgaacacgcc cttgcgaccg tagagatcac
      661 cgagcttggc ccacaccggt gtggacaccg cggtagccag cgcgtaggca gtgaccaccc
      721 aagagaggtg ggccagacca cccagctcgc cgacgatggt cggcattgcg gtgcctacca
      781 cgaggttgtc cagtatcgcg agcagcatgg cgatcaacag accgctcatc acggtgtaga
      841 tctcccgctt ggaccgtggc tggaccatgg gtgacgcggt tcgttccatg gtggtcatcg
      901 acgtcctccg tcgcttactt gacgaccggc tagttaactc gggtgtacgc taccagttac
      961 tagccggtcg tcaagtaagc tggccggtga tccggggagg gctgggcagg atggacgaac
     1021 ggcgcaccga cacccgcgag gcgattcggt cggtggccct ggagctgttc gctgaacagg
     1081 gctacgagaa gacctcgctc cgggagatct ctgaacggct aggggtgacc aaggccgcgg
     1141 tctactacca cttcaagacg aaggaagaga tcctgctcag cctgatcgag gatttcctgg
     1201 cccagatcga cgacctggcc gactgggccc aatcccgacc tgggggcgcg gagacccggc
     1261 atgaagtgtt gcgccgctac agcgacatgc tggacgggcg gacgacacag ctcgcccggt
     1321 tcctgcacga aggccaggcg gccatccgtg atctggccgc cggcgtggac atgcgcaagc
     1381 gactggatcg gctcatcggg accctcgtca cgtccgagca gtcactgacc gcccagctgc
     1441 gtgcccgtct cgccgtgata gcgctgcaca tcgggacctt caccgcacgt gacatcgagg
     1501 cctccgaggc gcaacgccgc gacaccgcac tccagatcgc gatggagatc attggaacgg
     1561 ccggcaaccc gtaggttgct tgccggctta gccgctgacc gcgcagcgga gagcgaagtc
     1621 aggagcgggc gcgctgcttg atgcgggagg tgagctcctg cacctggtcg taggtgcggc
     1681 ggcgttcggc catctccttg cggatcttgc ggtccgcgtg catcaccgtg gtgtggtcgc
     1741 ggccgccgaa ggtctggccg atccggggca acgacagatc ggtcagctcc cggcacaggt
     1801 acatggagat ctgccgggcc tgggctacat gcttggtctt gcctggtccg cacagatcat
     1861 ccatggtgac tccgaagaac tccgcggtca ccgccatgat gttgggtgcg gcgatctcgt
     1921 gtgccgcctc gtcggggatc agatcacgca gcacgatctc ggcgagctgg gtgtccacag
     1981 gttggcggtt cagcgaggcg aatgcggtca cccggatcag tgctccttcc agttcccgga
     2041 tgttgcgttc gatccgggcg gcgatgaact ccaacacttc atccggcgcg gccagccggt
     2101 caccggcggc tttcttgcgc aggatggcga tccgggtctc cagctcgggt ggctggatgt
     2161 cggtgatcaa gccccattcg aagcgggtgc gcaaccggtc ctccagggtg cccagtccct
     2221 tgggtgggcg gtcggaggag atcacgatct gcttgttcgc gttgtgcagg gtgttgaagg
     2281 tgtggaagaa ctcctcttgg gttccttcct ttccttccag aaactggatg tcgtccacca
     2341 gcagcacgtc gacgtcccgg tagcggcgct ggaaggcgac cttccggtcg tcccgcaggg
     2401 agttgatgaa gtcgttggtg aactcttcgg tggagacgta ccgcacccgc ataccaggga
     2461 agagccgctg cgcgtaatgc ccgacggcgt gcagcagatg cgtcttgccc agtcccgact
     2521 cgccccagac gaacagcggg ttgtacgccc gcgccggtgc ttccgacaca gccacagcgg
     2581 cggc
//
LOCUS       DASVXZ010000404         9828 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_223375, whole genome shotgun sequence.
ACCESSION   DASVXZ010000404 DASVXZ010000000
VERSION     DASVXZ010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9828
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223375"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            600..836
                     /locus_tag="VF788_08335"
     CDS             600..836
                     /locus_tag="VF788_08335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934186.1"
                     /translation="MADALSFTEIDGQHVELLPARTVLSLFATGSTGGNGGNGGSGQG
                     GLGINILSGIGILGTGVASAGNGIGGAGGDGGNA"
     gene            1526..1792
                     /locus_tag="VF788_08340"
     CDS             1526..1792
                     /locus_tag="VF788_08340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934187.1"
                     /translation="MSDALSFAEVDGQHVELLPARTVLSLFATGDCGCGGGGGSHTGG
                     AGGNGGSAQGGLGINILSGIGILGTGTASAGDATGGAGGAGGNA"
     gene            2212..2409
                     /locus_tag="VF788_08345"
     CDS             2212..2409
                     /locus_tag="VF788_08345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934188.1"
                     /translation="MSDAFTLAELHSLQLELLPARTVLSMLALGPEGTTGANGANGSN
                     STGVPTINVAGVPLTVPTVGS"
     gene            2564..3037
                     /locus_tag="VF788_08350"
     CDS             2564..3037
                     /locus_tag="VF788_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8934189.1"
                     /translation="MTVTTEALRELVNSDDAADLSPLSSVLVRCLELPAELPAGLAIG
                     EVAEITGVSAHTLRYYERIGLLEVDRDAGGRRTYDSEALARVVFVTRLRMSDMPIRDI
                     ARYLALVNQGEATVPARLALMQAHRTAIQRRLRDLRAALAVIDYKIVTYGGHCSP"
     gene            3133..4122
                     /locus_tag="VF788_08355"
     CDS             3133..4122
                     /locus_tag="VF788_08355"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8934190.1"
                     /translation="MTRILGRPGLAVSGLGLGCMGMSWAYGPADRTEALATIGRALDL
                     GITFLDTAEVYGMGENEKLVGEAIAGRRDEVVLATKFGIVADPDTGRPAGVDGSPGNV
                     HAAIDGSLARLGVDHVDLYYQHRPDPDVPVEETVGAMAELVAAGKVRHLGLSEPSADT
                     IRRASAVHPITAVQSEWSVFSRDIEDAVAPACRALGIGLVPYSPLGRGLLTGSIASID
                     DLTADDFRRTQPRWQAGNLAENLKLVEEIRSIAAQYDATPSQVALAWVLAQGEDVVPI
                     PGTKRRRYLEENAGSLRLALKTADIDRLSDLRPVGDRYPDMSWVERDTAPLAG"
     gene            complement(4777..5040)
                     /locus_tag="VF788_08360"
                     /pseudo
     CDS             complement(4777..5040)
                     /locus_tag="VF788_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949880.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5307..6683
                     /locus_tag="VF788_08365"
     CDS             5307..6683
                     /locus_tag="VF788_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007025676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934191.1"
                     /translation="MNTTGQQDNRLSLERWNEPEMKRALADRDISSVYRLLRKVGISQ
                     RHIAALTGQSQSEVSEILKGRQVMAYDVLVRISDGLGIPRGYMGLAYDPATATSMVGP
                     SDDALAEEDEFVKRRKLLAHGAAVMFGTAVLGADRGQWLPSPAQTPAPSKIGMTDVKQ
                     VEAATRAMRALDYQFGGGACRDAVVAQLSWAQRLLGASGTEEVRLRLFRALGDLQNLA
                     GWTTFDVGLLDSSRSHFATALEFAKQSGDAGLMSNIMYRIGRVYLHRGEANDALKWFQ
                     LGQIAAQDSGSELAVAVLCGNEAWAYALMGDDVQAKKLLGRSRDELARANLNEAPDWA
                     RFYNDTDMYAMIGTVHNELAAFDPRHAAVAIPAFSQALARYDDLMGRSQAFSLTMLAT
                     SHLRQGDVDHGVQIGHKALQVAATVKSRRVSDRLKPLAIEAARRSTNPAARELSYQIN
                     QHRNDRSV"
     gene            6683..7612
                     /locus_tag="VF788_08370"
     CDS             6683..7612
                     /locus_tag="VF788_08370"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HEX8934192.1"
                     /translation="MKRGAGTVPFLKFSTGRCDEQLTAGLRAVCAELGLSPIGARLLR
                     NVNNAVFQLALNPVVIRLVTLPSYIPRARLAVSAATVFAEHDVPAIRLLPGVPQPVQV
                     GQHVATVWQAVTPTGPAPGGVDLANLLRAVHAVPLPCQALPRWDPLTDFDNRVRHTTA
                     MAGADRDFLLRRSTELHAAVAELTFALPEAVLHGDAHLGNVIPAPDRAVLCDFDSCAV
                     GPPEWDLTPMAVGSVRFSRPAAHQHDFVKAYGFDVRDWEGFEVMQGIRDLKLIAGVFP
                     RTGSSPAVLAEFDRRMASLRAGRRFDRWRTVRR"
     gene            7705..9165
                     /locus_tag="VF788_08375"
     CDS             7705..9165
                     /locus_tag="VF788_08375"
                     /inference="COORDINATES: protein motif:HMM:NF016996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-tyrosine/L-tryptophan isonitrile synthase
                     family protein"
                     /protein_id="HEX8934193.1"
                     /translation="MRNGLTSSSAVACVPGPVQQISDPGHISVPMLTISHARSLRALP
                     LHLLHTSSWADQWPVWLDTCELGTLLSTLRTSSEAASARLADNAVRYLATSRDDTTSP
                     SAGDRLPQCPREIVVALHRILTRSRFLKGSRSCFPLETAVEQMVPFVQSRQPITILTI
                     GFPFKQHDNGLKVAGPWPDLAELGALLRLKELDGAFRAVYPPGLRVVVLNDGGYSRPR
                     ERPEMRRYRRQLKRYAQLVDLDNAVRFCDQSCFVAQLLGPRGWSAREKYRRTFRDRIS
                     LLAGGPRELHNAHRIDQRLAETLPPALLAGMPSFCDILSSLVYSVPVPPRPGTDSRRW
                     ACEVLACPDGFTAPDLSPELVSARRQVIDSAWQDSVNYLAASLADAAAGVVAQFPPHV
                     RLATVASRPGCSGFSYLGGSTLLPWHGTGCLDGRGVLCAEFLVSLDHRGFLPVYCDLI
                     GTEQPLMMVPFARTRFAHGRREVDPGLLANARLRSR"
     gene            9273..9578
                     /locus_tag="VF788_08380"
     CDS             9273..9578
                     /locus_tag="VF788_08380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934194.1"
                     /translation="MAARQDGSRWRRHRAVAREADFLDGVVDAQLELVRQLPVDQRDE
                     LAEALAILAMLAQDHRYYGRRWITRRQLRHRTDRALGRLDALGQVSAGVTAVPHRAD"
BASE COUNT         1698 a         3117 c         3243 g         1770 t
ORIGIN      
        1 ctagggaacg gcaccagcgt ggccggcgcc tgagggcggc gctgggggca gccgactgca
       61 gtcaagtcga gccagtaccg cccggcgatc atcagatcgc gacgctgacg ccggcaatgg
      121 aggggtggcc gtattccagc cacccctcca tttacaattt acgataccga acgaacgtag
      181 gtagtcgtcg ttacccgggg gtctaggtag cgacgcgtca gccgaccggc tgaatagcgc
      241 atattctcgg ccggaaacgc gacccacgcc cgaccgcacc aggtgcgtgc tcgccccatt
      301 acctagccaa acccgagcgg gcagcgtgac cgcgaaacat catctgcacg ggtacctgaa
      361 ccggcctgcc ccagccggag aaggtacata tccggttact cggctgggtg gttgtgaccc
      421 cgaacaggca ctaaaatcag gttccgcgac taagtgacaa aaatgtaaag gttacgtatc
      481 agatgcaggt tgccatcagg tcttcttatg gccatggtat ggattgagct gaatcggtca
      541 aattggccgg tgaggtgatc tgtaccggcc ctcagggccc ataacgagga ggtttgtgaa
      601 tggctgacgc attgagcttc accgagattg acggccagca cgtggagctg ctccccgcac
      661 gtactgtcct gtccctgttc gccaccggca gcaccggcgg caacggcggc aacggtggca
      721 gcggccaggg tggactcggt atcaacatcc tgagcggtat cggcattctg ggcaccggag
      781 ttgccagcgc cggtaatggc atcggtggcg ccggcggcga cggcggcaac gcctgagtcc
      841 accgtggttg agttccacgc ggttgagttc cagctgtaag cacgtgtggt gccgttggct
      901 agggaatggc accagcgtgg ccggcgcctg agggcggtac tgggggcagc cgactgcagc
      961 caagtcgagc cagtaccgcc cggcgatcac cagaccgccg acgtcggcgc cggcaatgga
     1021 ggggtggcca catttcggcc acccctccat agacactgac ggatatcgtc gtctggggct
     1081 gggacctcgt ttgtcggtgg attatggcta ggtagccact cgcattgcgc gcagtagcga
     1141 ctaaatggtc tcggaccggt gatgcagacg ttctggctga gagtagccac ccccgtccaa
     1201 tctctgggga ccaccgcgcg gttgcaccac ctaggctgca ccctaggtca cctcgacgtg
     1261 ggattactcc actcaagccg gtacggcgga aaaggtcgat cgagaactcg ataggtagtc
     1321 ggtgcgtgag cataagtggt tccgctaccg accgatgtct gaggatccgg gtgccacaac
     1381 taggtaggga atcgggaact taagtggcga atgcatgttg ccacatgccc cattcatgac
     1441 cagagtatga attaagccga atcggcgcag ccgtcgagga ggtgcttcat tcacggccca
     1501 gcgggccatt atgaggaggt tatggatgtc tgacgcattg agcttcgccg aggtcgacgg
     1561 ccagcacgtg gagctgctcc ccgcacgtac tgtcctgtcc ctcttcgcca ccggtgactg
     1621 cggttgcggc ggtggcggcg gcagccacac cggcggcgcc ggcggcaacg gcggcagcgc
     1681 ccagggtggg ctggggatca atatcctgag cggtatcggc attctgggca ccggaaccgc
     1741 cagcgctggc gacgctaccg gtggcgcggg cggcgcgggc ggcaacgcct gagctacccg
     1801 gcagttcagt tccagctgaa tcatgggggc agtggagggg tggtcgccaa tgcggcccac
     1861 ccctccaacc atgtccagcc tttggcggaa tgacccggag gactccggaa gtaagagtcc
     1921 cggtgctgag ccagggccat ttgcgccacg ccgggtccga atcggatgct gagccagccc
     1981 gcgcagcccc ggatattcgt cacgccggca ctgcggcatc gatcatggca ggcgccagca
     2041 acactttccg acgccctcta cgcgctctgc gagatgacca aggcggacct tataggtcac
     2101 ctaagtagtg gcacacaaaa ttacgtggcg aattcaggtt gtcatgatga atacctctcg
     2161 ccatggtgtg atttgcgtta gtcgtaatca gctacaacga gggaggacct gatgtctgac
     2221 gcatttacct tggctgagtt gcacagcctg caactggagc tgcttcccgc tcgtaccgtc
     2281 ctgtccatgc tcgcccttgg tcccgaaggg actaccggcg ctaacggcgc caacgggagc
     2341 aacagcaccg gtgtacccac cattaatgtc gcgggtgtac cccttaccgt gccaaccgtc
     2401 ggtagctaat cgcctcgatg ggtgattcca gcccagcggc tgtcgatcga gggcctggcc
     2461 gggggtggcc taatcgtgcc atccccgttg ccaggccatc ggcagtaatc tgaagagagc
     2521 agtgcttgac ttcgagggca ctctaagtcc taccgtcggt tccatgacgg tcaccactga
     2581 agcgctccgg gagctggtca actctgacga cgcggctgac ctttcgccgc tgtcgtcggt
     2641 gctggtgcgc tgcctggagc tgccggcgga gctgcctgcg ggcctggcga tcggtgaggt
     2701 tgctgagatt accggggtca gcgctcacac cttgcgctac tacgagcgga tcgggttact
     2761 ggaagttgat cgtgacgccg gcggccggcg gacttatgac tccgaggcgc tggcccgggt
     2821 ggtcttcgtg actcggctac gtatgtcgga catgccgatc cgcgacatcg cgcgctacct
     2881 cgcactggtg aaccaggggg aggccaccgt cccggcgcgc ctggctctga tgcaagccca
     2941 ccgcacggcg atccaacgcc gcctccgaga tcttcgggcc gccctggccg tcatcgacta
     3001 caagatcgtt acctacggtg gccattgctc accctgaaca cggcaaaccc gcattcagca
     3061 ggctcaacgg gtatatggca gccgaataac cccgcgagcg tgctgaatgc gccagatccg
     3121 acaggagtaa aagtgacacg aatacttggc aggccagggc tcgctgtttc tgggttgggg
     3181 ctggggtgta tggggatgag ttgggcttac gggcctgctg accgcaccga ggcgctggcg
     3241 accatcggcc gcgcgctcga cctcggcatc accttcctcg acaccgcaga ggtttacggg
     3301 atgggcgaga acgagaaact cgttggcgaa gcgatcgcag gacgccggga tgaggtggtg
     3361 ctggccacca agttcggcat cgtggcggat ccggacactg ggcgaccagc gggcgtggac
     3421 ggctcgcccg gcaacgtcca cgctgcgatc gatggatcgc tggcgcgcct gggtgtcgac
     3481 cacgtcgatc tgtactacca gcaccgcccg gacccggacg tgccggtgga ggagaccgtc
     3541 ggcgcgatgg ccgaactcgt cgctgcggga aaggtgcgcc atcttggact ctctgagccg
     3601 tcggcggaca cgatccgccg ggcgtcggcg gtacatccga tcaccgcagt gcaatccgag
     3661 tggtcggtgt tcagccgcga catcgaagat gccgtggcgc cggcctgccg cgcgctcggc
     3721 atcggcttgg ttccctacag cccgctcggt cgtggcctac tcaccggcag catcgcctcg
     3781 atcgacgacc tgaccgccga tgacttccgc cgcacccagc cccggtggca agccggcaat
     3841 ctggctgaga acctcaagct cgtcgaggag atccgctcga tcgccgctca gtacgacgcg
     3901 acgccctcgc aggtggcgct ggcctgggta ctggcgcagg gcgaggacgt tgtaccgatc
     3961 cccggcacga aacggcgtcg ctacctcgaa gagaacgcag gatcgttgcg gctcgcgctg
     4021 aagacagcgg atatcgatcg gttgtccgat cttcggccgg tcggtgaccg ttatccggat
     4081 atgtcctggg tcgaacggga cacggccccg ctcgcgggct gagctccacg cgctccggaa
     4141 cgatcaacag aattgtgggg cggggtcgtt cctctcgaac gaccccgccc catttgaggg
     4201 tgcctgcgct acacgcgtcc ggcgccggac gggggatctc ccgggcctgc ggcgctgtgg
     4261 ttgagacacg accaagggct gagtcacaac caggcaccgg gcgcgggatc cggcagtcat
     4321 cagaccaacg ttgacggtga cagtcggtca ggcaacgacg gtgcaccggc gcggcactcc
     4381 actcggtgac gagcgggatg gtccagcttg ttgagttgtg gtgtggccgg tgatccttcg
     4441 acatctcggt cgggggcacg gacgttcgcc ggatcaccgg ccacatggcg gatgctcagc
     4501 cttcgtgggc ggggggagtc ccacgaacag tggcgaggcc gccagctcta tggaattagt
     4561 aaagactggt ggagttagtg actggtggag ttagcgggcc gcacccgccc cagcagggac
     4621 tgcggattgg aacagggcgc tcgactgacg tgtctgccac gcactccgac gggccctcag
     4681 cctggaaaac accgaccggg gaatctctga cctcgcggtg tcacatttca cggtctcaga
     4741 gctggagtac atgactcccg aaggcatcgg gtccggggac actaggtgct cgtgtgcggc
     4801 ccgccacacg ctgcacgatg ccgcacggcc tcgccagtta ccggagcact ccgggcaacg
     4861 tccccgagga tctggcgcat gcgaggcgag gagatcgcgc cacccatgag tcaagcgggg
     4921 taattcactg cgtgcgatcg acaagagtga cccgttgtcg gcgttactcg ccagttcgtc
     4981 gagcatgtcg agcctgtccc atacagcctg ccggaggatc tgacccagca cctggtccac
     5041 ctcttaactc cacctctcca ccgtccgagc cggatctctg aaggaaactc gccgcacggg
     5101 tcttggtggg cgccagctca aactaggcag agagcggggc cggattaaac gggtcgcggg
     5161 gtgtgctgcg ctgatcgggc gtgctatgac ggtgagcggc acatattgat aggtagcacc
     5221 gatcagcttg accgaagtgc tcttcaccag cgacgacgtg catgcatact ctgcacacgt
     5281 cgcccgtcgg acggcaaggg ggcgagatga acacaaccgg ccagcaggac aaccggctgt
     5341 ctctggagcg ctggaacgaa ccggagatga agcgggcgtt ggctgatcgt gacatcagct
     5401 cggtttaccg cttgttacga aaggtaggca tctcgcaacg gcacatcgca gcgttgaccg
     5461 ggcagtccca gtccgaggtc tcggagatcc tcaagggccg ccaggtcatg gcctatgacg
     5521 tgctggttcg aatctctgac ggtttgggta tcccccgggg gtacatgggt ctggcctacg
     5581 acccggcgac ggcaacgagc atggtcggac cgtccgacga tgcgctggca gaggaggacg
     5641 agttcgtgaa gcgccggaag ctcctggcgc atggagctgc cgtgatgttc ggcaccgcag
     5701 tgctgggggc cgaccgcggg caatggctgc ccagccctgc ccagacgccg gcgccgagca
     5761 agatcggcat gacggacgtc aagcaggtgg aggcggccac cagggccatg cgtgctctgg
     5821 actatcagtt cggtggtggc gcgtgccgtg acgcggtcgt cgcccagctg tcctgggcgc
     5881 agcgcctgct gggcgcgtca ggcacggaag aagtccggct gcggctgttc cgagcgctgg
     5941 gtgatttgca gaacctcgcc ggatggacga ctttcgacgt aggcctgctg gactcttcgc
     6001 gcagccattt cgcaactgct ctggagttcg ccaaacagtc tggcgatgcg ggcctgatgt
     6061 ccaacatcat gtaccggatc ggccgggtct acctgcaccg cggagaagcg aacgacgccc
     6121 tcaagtggtt ccagctgggg cagatcgctg cgcaggactc cgggtcggag ctggcagtcg
     6181 cggtgctgtg cggcaacgaa gcgtgggcgt acgccctgat gggcgacgac gtgcaggcca
     6241 aaaagctgct cggccggtcc cgtgatgaac tggccagggc taatctgaac gaggcgcccg
     6301 actgggcccg gttctacaac gacaccgaca tgtacgcaat gatcgggacg gtccacaacg
     6361 aactggccgc attcgacccg cgacatgccg ccgtcgcgat tcccgctttc agccaggccc
     6421 tggcccgtta tgacgacttg atgggccgca gccaggcatt cagcctcacc atgctcgcta
     6481 ccagccacct gcggcagggg gatgtcgacc atggtgtcca gatcggtcac aaggccctgc
     6541 aggtggccgc cacggtgaaa tccaggcggg tgagcgaccg gctcaaacca ctggcgatcg
     6601 aggcggcccg acggtccacc aacccggccg ctcgtgagct ttcctaccag atcaaccagc
     6661 accgaaacga ccgaagtgtc tgatgaaacg gggtgccggc acggtgcctt ttctgaagtt
     6721 ctctacaggt cgttgtgacg agcagctcac cgccggtctg cgggcggtgt gcgctgagct
     6781 tggcttgagc ccaatcggag cccggttact ccgcaacgtc aataacgcgg tgttccagct
     6841 tgccctgaat ccggtagtga tccggctggt cacgttgccg tcgtacattc cgcgcgcccg
     6901 gctggcggtg tccgcagcga cggtcttcgc cgagcacgac gtgccggcga tccggttgct
     6961 tcctggggtt ccccagccag ttcaggtcgg ccagcatgtt gccacggtgt ggcaggcggt
     7021 taccccgact ggccccgcgc cgggtggagt ggatttggcc aacctgcttc gggcggtcca
     7081 tgcggtgcca ttgccctgcc aagcgttgcc ccgctgggat ccactgactg atttcgataa
     7141 tcgggtgcgg cacaccaccg cgatggccgg tgccgaccgg gatttcttgc tgcgccgcag
     7201 taccgagctg cacgctgcgg tcgctgaact gacctttgct ctccccgaag ccgtattgca
     7261 cggtgacgcg catctgggga acgtcatacc cgcgccggac cgggccgtgc tgtgcgactt
     7321 cgactcgtgc gccgtcgggc cgccggaatg ggatctcacc ccgatggcgg tgggcagcgt
     7381 gcggttcagc aggcccgcgg ctcaccaaca tgacttcgtc aaggcctatg gcttcgacgt
     7441 ccgggactgg gaaggcttcg aggtgatgca gggcattcgt gatctcaagc tgattgccgg
     7501 agtctttcca agaaccgggt cgtcaccggc cgtgctcgct gagttcgacc gtcgaatggc
     7561 cagcctgcgg gccggccggc ggttcgatcg ttggcggacc gtccggcgct gaactagtgc
     7621 gtcgacccgg tcagacgtct actgtcggac tctgtgtcgc cggcccgcac ctcggtggcg
     7681 ggagtgttga ccccgtccca catcgtgaga aatggactga cttcctccag cgcagtggcg
     7741 tgcgtccctg gcccggtgca gcagatcagc gaccctggtc acatcagcgt cccgatgctc
     7801 accatctcgc atgcccgatc gttgcgcgcg ctcccgctgc atttgttgca cacctcgagc
     7861 tgggccgacc agtggccggt ctggctggat acctgcgagt tgggaacgct gctcagtacc
     7921 ttgcggacca gctcggaggc cgcgtcagcc cggctcgccg acaacgctgt gaggtacctg
     7981 gcgacctcgc gggatgacac caccagcccg tcggccggtg atcggttacc acagtgtccg
     8041 cgcgagatcg tcgtggcgct gcaccggatc ttgacccgct cccggttcct caaaggctcg
     8101 cgatcgtgct ttccgctgga gaccgcggtg gagcagatgg tgcccttcgt ccagtcccgg
     8161 caaccaatca cgatcctgac catcggtttc ccgttcaagc agcatgacaa tggactcaag
     8221 gtcgccggac catggcccga cttggccgag ctcggcgcgc tgctccggct caaggaactc
     8281 gacggagcct tccgagcggt gtacccaccc ggcctgcgag tggtcgtact caacgatggt
     8341 ggttactcac gaccccgcga gcggcccgag atgcggcgct accggcggca gctgaaacgc
     8401 tacgcgcagc tggtcgatct agataacgcg gtgcggtttt gcgatcagtc ttgtttcgtc
     8461 gctcagctgc tcggtccgcg gggttggagc gcccgcgaga agtaccgccg cacctttcga
     8521 gaccgaatct cgctgttggc tggcgggcct cgtgaactgc acaatgccca tcgcattgac
     8581 cagcgactag ccgaaacgtt gccaccggca ttgctggccg gcatgccgtc tttttgtgac
     8641 atcctgtcct cgttggtgta ctccgtcccg gtgccgcctc ggcctggaac cgactcgcgg
     8701 cggtgggcct gcgaggtgct cgcctgtccc gacgggttca ccgctccgga cctgtcacct
     8761 gagctggttt ccgcgcggcg ccaggtgatt gactcagcat ggcaggactc cgtgaactac
     8821 ctggcggcct cgctggccga tgccgcggcc ggggtcgtcg cgcagttccc gccgcacgtc
     8881 cggctggcca ccgtcgcctc acggcctggt tgcagtggtt tctcctacct cggtggttcg
     8941 acgctgctcc cctggcacgg cacggggtgc ctggatgggc ggggggtgct gtgcgccgag
     9001 ttcctggtga gcctggatca tcgcggcttc cttccggtgt actgcgacct catcggcacc
     9061 gaacagccgc tgatgatggt gcccttcgcc cgaacccggt tcgcgcacgg ccgcagggaa
     9121 gtggaccccg gcctgctggc taacgcccgg ctgcggtctc gttgagagat ctcgctgaaa
     9181 gcattcgatc gcggtgaatg tggtctgaag agctaacgcc ggcccacggt ctggcgatgg
     9241 ttggagcaac tggacgatcg cgggtggtgc atatggcggc aaggcaggac ggctcccggt
     9301 ggcggcgcca ccgcgccgtg gctcgtgaag ccgacttcct ggacggcgtg gtggacgccc
     9361 aactggagct ggtccgccag ctgccggtgg accagcggga cgaactcgct gaggcgctcg
     9421 ccatcctggc gatgctggct caggatcacc ggtactacgg gcggcgctgg atcacccgcc
     9481 gccagctacg gcaccgtacc gaccgagcgc tcggcagact tgacgccttg ggccaggtgt
     9541 ccgctggggt caccgccgtc ccgcaccgcg ctgactgacc cgcgcaccag atcaccgtgc
     9601 ccgctctcac aaccttgcaa cggttcaggc tcacgcctgg ccggcacgct gtcggtgccg
     9661 agacatagtc tgacgtcgtg aactcggcag tgctgcttga tgcagcggta gtgacccggt
     9721 gccgtcgccg ggtgcatctg gaacacgatc cagtagcggt cgacgaaccc cgcgcagccc
     9781 tggatgcgac cacacagcgg cgaatcgccg acgccgccgc acaccgtc
//
LOCUS       DASVXZ010000405         5659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_670867, whole genome shotgun sequence.
ACCESSION   DASVXZ010000405 DASVXZ010000000
VERSION     DASVXZ010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5659
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_670867"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VF788_08385"
     CDS             <1..195
                     /locus_tag="VF788_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEX8934195.1"
                     /translation="PLGMDPRAAFAKIGDAALRLRRAHPGAVELSAGMSGDLEEAIAH
                     GSTCVRVGTALLGRRPLTSC"
     gene            276..1076
                     /gene="sepF"
                     /locus_tag="VF788_08390"
     CDS             276..1076
                     /gene="sepF"
                     /locus_tag="VF788_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEX8934196.1"
                     /translation="MSALHRLKAYFGMVPVEDFDAAAGFDDYHADYHAGYSGYPDSGA
                     YVPGHNQPGYEHQARHNLAERPVTHRPHRAAFDNYDGSFPAPAGQHAAPRMHPARSPS
                     SSPDPRLVGSRTAESWATEPWGTDAPVHGSLAIDTATADAAHIGNRPTARQPVAPQPL
                     TQAARSGPFTSDEVHPLSRIVTLHPHSYNEARPIGERYREGNPVIMNLTAMEDRDAKR
                     LVDFAAGLAFALRGSIDKVTNKVFLLSPPNLDVSAEDRRRIAEGRYFA"
     gene            1133..1417
                     /locus_tag="VF788_08395"
     CDS             1133..1417
                     /locus_tag="VF788_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010306574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEX8934197.1"
                     /translation="MDVVRYVVYYLLFFFWLLLTARIVVELVRSFARSWQPVGGVAIA
                     LESVYTMTDPPVRALRRVVKPIRIGGVGLDLSIMVLLLVVFILMRVVDPR"
     gene            1521..2312
                     /locus_tag="VF788_08400"
     CDS             1521..2312
                     /locus_tag="VF788_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8934198.1"
                     /translation="MPLTPADVHNVAFSKPPIGKRGYNEDEVDAFLDLVEAELARLIE
                     ENNDLRNQVEQLDQQLRAAPVDTGRNLRPLEPPRPVMAPVPPPMMEQTSPGGDHHVQA
                     AKVLGLAREMADRLTGEAKAEADGMLGEARTKSEQLLSDARAKADGMVNEARTRAETM
                     LNDARTRVETLDRQSREKAASLERDAARKHTEIIGSISQEKSVLEKKIDELRTFEREY
                     RTRLKTYLESQLRELDGRASAAPADSVRTQGFVTSGFGARAEAGS"
     gene            2293..2913
                     /locus_tag="VF788_08405"
     CDS             2293..2913
                     /locus_tag="VF788_08405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934199.1"
                     /translation="MPKLVANATTGVRLTVVLLLAAVGLLIASLGPGRAGLAWGSVGL
                     SVVAAAIILRRWRRSWLRGQDAPEDEIVLSEDEPITDAEADEAQLASASVNSAPESSV
                     QAGGVGGSPTEVAEDQSDGSQPAEEDTDAADLLVVYELTDEVLVVDENPRYHLARCRL
                     PDHERAERLPVREARELGFTPCGRCRPDSALARKHRASRVTATESS"
     gene            3176..>5659
                     /gene="ileS"
                     /locus_tag="VF788_08410"
     CDS             3176..>5659
                     /gene="ileS"
                     /locus_tag="VF788_08410"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEX8934200.1"
                     /translation="MVYPKVSGHRPIAAQPCFPEVEASVLQYWQEDQTFAASVAARPA
                     GSSDSYSDSNGSSNEFVFYDGPPFANGLPHYGHLLTGYVKDVVPRYQTMRGRRVERRF
                     GWDCHGLPAEVEAERQLGIKHKSEIEEMGVAEFNAACRTSVLRYTQEWREYVTRQARW
                     VDFDNDYKTLDLTYMESVLWAFKTLWDKGLIYQGFRVLWYCWRCETPLSNTETRMDDV
                     YRNRQDPAVTVGLRLSNPGSALDGVLALVWTTTPWTLPSNLAVAVHPLLMYVTVKVGG
                     ERYLIAEDRLAAYARELGEQPQVVGRYEGSELQGLHYLPPFDFFAGRLNAHQLLAADY
                     VTTDEGTGLVHIAPAFGEEDKAVTDAAGIEVVVPVDSAGQFTSEVAPYAGMQVFDANR
                     VIVRDLRDGAPYVGAVLLRHESYEHPYPHCWRCNNPLIQRAVTSWFVAVTKFRDRMVE
                     LNREITWVPEYVGDGQFGTWLEGARDWNISRNRYWGSPLPVWVSDDPAYPRVDVYGSL
                     DELERDFGVRPADLHRPFVDQLTRPNPDDPTGRATMRRVPEVLDCWFESGSMPFAQVH
                     YPFEAAEWFEHHYPGDFIVEYNGQTRGWFYTLHVLATALFDRPAFRSCLAHGIVLGDD
                     GLKMSKSKGNYPEVTEVFNRDGSDAMRWFLMSSSILRGGNLVVTEQGIREAVRQALLP
                     LWNSWYFLTLYANAAGVDGQWRTGSPHVLDRYVLAKLHDLAVDVTARMDRYDIAGACA
                     SVRGFCDVLTNWYVRRSRDRFWAGQPEAIDTLHTVLEVVSRVAAPLLPLTAETVWRGL
                     TGERSVHLTDWPSATEMPADPVLVANMDAV"
BASE COUNT          964 a         1811 c         1895 g          989 t
ORIGIN      
        1 ccgctgggga tggatccccg ggcagccttc gccaagatcg gtgacgcagc gctgcggctg
       61 cgccgggcgc atcccggcgc ggtcgagctg tccgctggca tgagtgggga cctcgaggag
      121 gccattgcgc acggctcgac atgcgtgcgt gtcggaaccg cgttactggg gagacggccg
      181 ttaacctcat gttgaccatg tccgacggtc tgcgtggcag agcgagccgg gctcgacgag
      241 tggtgcgtcg agctgcggta caggaaggcg agacgatgag cgcgctgcac aggctgaagg
      301 cctatttcgg catggttcct gtcgaggact ttgacgcagc agcaggattc gacgactacc
      361 acgccgacta ccacgcgggt tattccggtt acccggattc gggagcctac gtcccgggcc
      421 ataaccagcc tggttatgag caccaggcac gtcacaacct cgccgagcgg ccggtcacac
      481 atcggcccca tcgggcggct ttcgacaact atgatggaag tttccccgcc ccggctggac
      541 agcatgcggc gcccaggatg cacccggccc gatccccttc ctcttctcca gaccctcgcc
      601 tcgtcggatc tcggacggct gagtcctggg ccaccgagcc atggggtacc gacgctccgg
      661 tgcacggctc gctggccatc gacacggcaa ccgctgatgc ggcgcacatc gggaacaggc
      721 ccacggcccg ccaaccggtc gcgccccaac ccctcacgca agcagcacga agcggcccgt
      781 tcacgtccga cgaggtccat ccactttccc gcatcgtcac gttgcacccg cacagctaca
      841 acgaggctcg gccgatcggg gaacgctacc gagagggcaa tccggtgatc atgaatctga
      901 cggcgatgga agaccgggac gccaaacgac tcgtcgactt cgcggcgggg ctggccttcg
      961 cgctgcgcgg ttcgatcgac aaggtcacca ataaagtgtt cctgctctcg ccgcccaacc
     1021 tcgacgtctc cgccgaggac cggcgccgga tcgccgaagg tcgctacttc gcctgacgct
     1081 gtccgggggc cccggctcgc cattgcctgg acaccggtgg cagagtgtct ccgtggatgt
     1141 ggtccggtac gtcgtgtact acctgttgtt cttcttctgg ctgctgctta cagcgcgtat
     1201 agtggtggag ctcgttcgct cgttcgcgcg tagttggcag ccggtcgggg gggtagcgat
     1261 cgctctggag tcggtctata cgatgactga cccgccggtc cgagcgctgc gccgggtggt
     1321 caaacctatc cggattggcg gcgttggact ggacctgtcc attatggttc ttctgctcgt
     1381 agtgttcata ctgatgcgag tggtggatcc gaggtagtag cgaccacgga ccctcggggc
     1441 ggatgcccca gggtgttgaa ccccatgaag cgatgtgccc agcaggtaca tagtcgtcga
     1501 ggagtgcgtg aggtgatccg atgccgttga cccccgccga cgttcacaac gtcgcgttca
     1561 gtaagccgcc gatcggcaag cggggctaca acgaggacga ggtggacgcc ttcctcgacc
     1621 ttgttgaggc cgagctggct cggttgatcg aggaaaacaa tgatcttcga aatcaggttg
     1681 agcaactgga tcagcagctg cgggctgcgc cagtcgacac tggccgcaac ctgcgaccgc
     1741 tggagccacc gcgtccggta atggccccgg tacccccgcc gatgatggag cagacctccc
     1801 ccggcggtga tcatcatgtc caagctgcca aggtcttggg gctggctcga gagatggctg
     1861 accggctgac cggcgaagcg aaggctgaag ccgacgggat gttgggtgag gctcggacca
     1921 agtccgagca gctgctctcc gacgcgcgag cgaaggccga cggcatggtg aacgaggcca
     1981 ggacgcgggc cgagaccatg cttaatgatg cccgtaccag ggtcgagacg ctggatcggc
     2041 agtcccggga gaaggccgcc tccctggagc gggatgcggc gcgcaagcac accgagatca
     2101 ttggctcgat cagccaggag aagagtgtcc tggagaagaa gattgacgaa ctgcgcacgt
     2161 tcgaacgcga gtaccgcacc cgtttaaaga cctacctgga gtcacaactc cgggagctgg
     2221 acggtcgggc ctcagcggca ccagccgatt cggtgcgtac tcagggcttc gtgacgtccg
     2281 ggttcggcgc gcgtgccgaa gctggtagct aacgcgacga cgggtgtgcg cctcacggtg
     2341 gtgctgctgc tagcagcagt gggtttgctc attgcctccc tcgggccggg tcgcgcaggg
     2401 ttggcgtggg gctcggtcgg gctcagtgtg gtggctgcag cgataattct ccggcgctgg
     2461 cggcgatcgt ggttgagagg ccaggacgca cccgaggatg agatcgttct ctcagaagac
     2521 gaaccgataa ctgatgccga ggcggacgaa gcgcagcttg cgtccgcctc ggtgaactcg
     2581 gccccggagt cttccgtcca ggctggtggg gtcggtggca gtccgactga ggtggcagag
     2641 gaccagtctg atgggagcca gccggcggag gaggataccg acgccgcgga cctgctggtg
     2701 gtgtacgagc tcaccgatga ggtgctggtg gttgacgaga acccgcgcta tcacctcgca
     2761 cgttgccggt tgcctgacca tgagcgagcc gagcggctac cggtacgcga ggcgagggaa
     2821 ctgggtttca ctccctgtgg ccggtgccgg ccggacagcg cactcgcgcg caagcaccga
     2881 gcctcccgag taacggctac cgaaagcagt tgagccccgc gaaatccgct agctgagccc
     2941 aggtatcctg gggtctacag gcaccgatcc ggttatcacc ggggagcctc cggaagaacg
     3001 aggcacgtct gaagcgaggc gagtcttcag tagaaccgga cgggtccggc ccgtcatcgc
     3061 cggctcaacg agaggctgcc tgcatttgcg ggtggcaaac ggggtggtac cgcggtccgc
     3121 agcgtagctg ctggtcgtcc ccgtgcagag ccctgcacag gaagtacacg ccgccatggt
     3181 ctaccccaaa gtctccggtc accggccgat cgccgctcaa ccgtgtttcc cagaggtcga
     3241 ggcgtccgtc ctgcagtatt ggcaggagga ccagaccttc gctgcatcgg tagccgcccg
     3301 accggcaggt agtagcgact cgtacagtga ctcgaacgga agttcgaacg agttcgtctt
     3361 ttacgacggt ccacccttcg ccaacggctt gccgcactac ggtcacctgc ttaccggcta
     3421 cgtcaaggac gtggtgccgc gctaccagac tatgcgcggc cgccgggtcg agcgccggtt
     3481 cggttgggac tgtcacggcc tgcccgctga agtcgaagcg gaacggcaac tgggcatcaa
     3541 gcacaagtcc gagatcgaag agatgggtgt ggcggagttc aacgctgcct gccgtacctc
     3601 ggtgctgcgc tacacccagg agtggcgcga atacgtcact cgccaggccc gctgggtgga
     3661 cttcgacaat gactacaaga ccctggatct cacctacatg gagagcgtcc tgtgggcgtt
     3721 caagacgctc tgggacaagg gccttatcta ccagggcttt cgggtgctgt ggtactgctg
     3781 gcgttgcgag acgccgctgt ccaacaccga aaccaggatg gacgacgtct accgcaaccg
     3841 gcaggatccc gcagtcaccg tcgggctccg gctctccaat cccggatctg cgctggacgg
     3901 tgtgctcgcc ctggtctgga ccaccacccc gtggacgctg ccgtcgaacc tggcggtcgc
     3961 ggtgcacccc cttctgatgt acgtcaccgt caaggtgggc ggcgagcgtt acctcatcgc
     4021 tgaggaccgg ctggcggcct acgcccggga gctgggtgag cagccacagg tggttggccg
     4081 gtacgagggg tccgaactgc agggccttca ctacctgccc ccttttgact tcttcgccgg
     4141 ccggctcaac gcccaccagc tgctcgccgc cgactatgtc accaccgacg agggcaccgg
     4201 cctggtacac atcgctcccg ctttcggcga ggaggacaag gctgtcaccg acgccgcagg
     4261 catcgaggtg gtggtcccgg tcgactcggc tgggcagttc acctccgagg tggcgcccta
     4321 tgccgggatg caggtcttcg atgccaaccg ggtgatcgtc cgggacctgc gcgacggtgc
     4381 gccttacgtc ggcgctgtgc tgctgcgcca cgagagctac gagcacccct acccgcactg
     4441 ctggcgttgc aacaatccgc tcattcagcg cgcggtcacc tcatggttcg tcgctgtgac
     4501 caagttccgg gaccggatgg tcgagctcaa ccgggagatc acctgggtgc cggagtatgt
     4561 cggggacggc cagttcggca cctggctgga gggcgcccgc gactggaaca tctcccgcaa
     4621 ccggtactgg ggttcgccgt tgccggtctg ggtcagcgac gatccggcct acccgcgagt
     4681 ggacgtctac ggctcgctgg acgaactgga acgcgacttc ggggtgcgcc cggctgacct
     4741 gcaccgccca ttcgtcgacc agctgacccg gcccaacccg gacgacccga ccgggcgcgc
     4801 cacgatgcgc cgggtgcctg aggtgctgga ctgctggttc gagtccggct cgatgccctt
     4861 tgcccaggtc cactacccgt tcgaggctgc cgagtggttc gagcaccact atccgggtga
     4921 tttcatcgtc gagtacaacg gccagacccg cggatggttc tacacgttgc acgtgctggc
     4981 cactgcgctg ttcgatcgcc cggcatttcg ctcctgcctg gcccacggga tcgtgctcgg
     5041 cgacgacggg ctcaagatgt ccaagtccaa gggcaactat cccgaggtca ccgaggtgtt
     5101 caaccgggat ggctcggatg cgatgcgctg gttcctgatg tcctcatcga tcctgcgggg
     5161 cgggaacctc gtggtgaccg agcagggcat ccgggaggcc gtacgccaag cgctgctacc
     5221 cctgtggaac tcgtggtact tcctgacgct atacgccaac gccgcaggcg ttgacgggca
     5281 gtggcggacc ggcagccctc acgtactgga ccggtacgtg ctggccaagc tgcacgacct
     5341 ggccgttgac gtcaccgcgc ggatggaccg ctacgacatc gccggggcgt gtgccagcgt
     5401 gcgcggcttt tgcgacgtgc tcaccaactg gtacgtgcgc cggtcccggg accgcttctg
     5461 ggccggtcag cccgaggcga tcgacaccct gcacaccgtg ctcgaggtgg tgagcagggt
     5521 ggcggcgccg ctgctgccgc tgaccgcgga gaccgtgtgg cgcgggctga ccggcgagcg
     5581 ctcggtgcac ctgaccgact ggccgtcggc aacagaaatg cccgccgacc cggtgctggt
     5641 cgcgaacatg gacgccgtc
//
LOCUS       DASVXZ010000406         8472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_312931, whole genome shotgun sequence.
ACCESSION   DASVXZ010000406 DASVXZ010000000
VERSION     DASVXZ010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8472
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312931"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..419
                     /locus_tag="VF788_08415"
     CDS             <1..419
                     /locus_tag="VF788_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8934201.1"
                     /translation="WLFYAGVLTAVTQTILWCVIFFFASAGASSAYLTVSEIFPLELR
                     GQAISYFFAISQLTGGVAAPAIFAALIGDGKDRGPLTIGYLVGAVIMIVGGVIAWYFG
                     INAERRSLEDIANPLSATGQRRTGATRFEGPSPLSG"
     gene            complement(452..727)
                     /locus_tag="VF788_08420"
     CDS             complement(452..727)
                     /locus_tag="VF788_08420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934202.1"
                     /translation="MDSVAARRLWTITRGNALSAAAGRGREVWFFPRTRMPMGLAVGV
                     VTIGGRLHLVFRYRYPLFGQAEVTDFAERYWQRWIVLPVPASSMVRP"
     gene            929..2173
                     /locus_tag="VF788_08425"
     CDS             929..2173
                     /locus_tag="VF788_08425"
                     /inference="COORDINATES: protein motif:HMM:NF033564.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEX8934203.1"
                     /translation="MSAYSSSPITLLAARSGPQSEDADAAGKDLAGRDLLVALAKVPD
                     PRKARGVRHRLVTVLAAAVCAVLAGARSYVAIAEWTRDLPVGVRLRLGLGRCAPSEST
                     IRRILQAVDAQALDTVVSDWLAHRVASSTASCPASAVVKPSQARSSLPRAVAVDGKAA
                     RGARGINGRPAHLFAAFDHRSGVVLGQSEVEGKTNEITAFAPLLDRLDLANVVITADA
                     LHTQDRHATYLHERGGHYVFIVKGNRPKLRAQLAGLPWRDIPAANTRCGKGHGRAESR
                     ILKLAAISDQTSTGIMFPHARLAAQIMRRRRQATSSGTSTWHTETVYAVTDLGWNHIR
                     ADHLAEIIRNHWSIENRLHWIRDVTFAEDHSQIRTGNGPAVMVTLRNFSVSRHRIDGQ
                     NNIAAACRHAGRHPIRAANLLT"
     gene            2747..3292
                     /locus_tag="VF788_08430"
                     /pseudo
     CDS             2747..3292
                     /locus_tag="VF788_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            4518..4685
                     /locus_tag="VF788_08435"
     CDS             4518..4685
                     /locus_tag="VF788_08435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934204.1"
                     /translation="MLVVIAMEQPPVSGQLCGDRRLCRTDRGDPVTGAGDVRAMMTLV
                     AGADPEQTEDW"
     gene            4716..4949
                     /locus_tag="VF788_08440"
     CDS             4716..4949
                     /locus_tag="VF788_08440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934205.1"
                     /translation="MRLVVRTVVEGGIWIAYSDVFKLVLVEFPASRLAVLQFCRGHHV
                     DLPPSSTLSIKVTFAGTKYKDWDTSPVAAIASA"
     gene            complement(5072..5200)
                     /locus_tag="VF788_08445"
     CDS             complement(5072..5200)
                     /locus_tag="VF788_08445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934206.1"
                     /translation="MDGFTDLPLAFLAGLRAVIIPFPTWGRWLRACQDPRAVQVRG"
     gene            5502..5633
                     /locus_tag="VF788_08450"
     CDS             5502..5633
                     /locus_tag="VF788_08450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934207.1"
                     /translation="MLDDPVAAARSLRNHLRPANLMELVVILAEAAADGLRERTTTQ"
     gene            6089..6355
                     /locus_tag="VF788_08455"
     CDS             6089..6355
                     /locus_tag="VF788_08455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934208.1"
                     /translation="MLSWVWLIISGAIPVVMLAMKLVFCWMVYNRDGDREALAVAAQV
                     TAPGWSALRRRDHRSYGAGRSNLHSIGSGVDLPRNGVEHSIGER"
     gene            6929..7051
                     /locus_tag="VF788_08460"
     CDS             6929..7051
                     /locus_tag="VF788_08460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934209.1"
                     /translation="MIPGPAVLAGALGLLVGLGGAGQGAAKAVRRAWVVVISWT"
     gene            complement(7048..7245)
                     /locus_tag="VF788_08465"
     CDS             complement(7048..7245)
                     /locus_tag="VF788_08465"
                     /inference="COORDINATES: protein motif:HMM:NF025080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934210.1"
                     /translation="MAQNRIWLAITALATDLLAWTQRLALTGPAASYEFKCLRLRILA
                     AAGRLVRTGRRQLLKINPTWP"
     gene            complement(7221..8318)
                     /locus_tag="VF788_08470"
     CDS             complement(7221..8318)
                     /locus_tag="VF788_08470"
                     /inference="COORDINATES: protein motif:HMM:NF033539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934211.1"
                     /translation="MATARGAELSRERSARLGPWRRPLAIYDPGKIVLDVVVAVALGG
                     DCAADVAVLRAQPGVFGLVASDPTVSRLIATLAGDVDAALGAIASARAVARARVWGRP
                     GAPVADGRVVINLDATVVIAHSVKEFATRTWKKTFGFPPLLAYADHGDGGTGEPLSGL
                     LRPGNAGSNTAADHVEVFDAALTQLPEPWRTPGAHGRRPVLVRTDAAGATHAFTHHLA
                     AMGVEFPVGAYLHHFDIHWVLAQLPGQAWTPAYQVRAPHAGEPGPVIEPRDGAAGAEA
                     TGLVDLSAWPGGTRLILRRERPHPGAQLRITDVEGHRIIGMLTNTPGGPLPDLELRHR
                     RHARVEDRIRNAKNTGRRNLPSTIWPKIGSG"
BASE COUNT         1477 a         2722 c         2696 g         1577 t
ORIGIN      
        1 cgtggctatt ctacgcgggt gtcttgacgg cagtgactca aacgatcttg tggtgtgtca
       61 tcttcttctt cgcctcggcc ggagcgtcgt ccgcttatct cacggtaagc gagatcttcc
      121 ccttggagct acggggccag gcgatctcat acttcttcgc tatctcgcag ctcaccggtg
      181 gtgtcgctgc tccggcgatc ttcgccgccc tcatcggtga cggcaaggac cgtggtccgc
      241 tgactatcgg gtacctggtc ggtgccgtga tcatgatcgt cggtggtgtc atcgcctggt
      301 acttcggaat caatgccgag cgcaggtcgc tcgaggacat cgccaacccg ctatcggcca
      361 cagggcagcg tcgcaccgga gccacgcggt ttgaggggcc gtcgccattg agcggctgat
      421 gctcgtggga cttcatgggg aacctcgcgg gtcaaggccg gaccatgctg ctcgccggca
      481 ccggtaacac gatccagcgc tgccagtagc gctcggcaaa atccgtgact tcagcctggc
      541 cgaatagcgg gtaccggtag cggaacacca gatggagccg gcctcctatg gtgaccacac
      601 ccacggccag acccatgggc atcctggtcc gcgggaagaa ccacacctcg cggccgcgac
      661 cagctgctgc agatagcgcg ttgccgcggg taatggtcca cagccgccgg gcggccaccg
      721 aatccaccgg cccacccagc ctcgcctggc ctccaccagc ggtgtgatct cgccgcaacc
      781 cgatgtagct ggctggaaca gggcctcggc aaggtcgcgc cggtcggcgt gttgtcgctg
      841 cgacacgcgg ttgggggtgt agggcggaca cggctcccaa gggtgatcat cacggttctc
      901 acaccagctc gatcaccgga gtgtcgccgt gtccgcgtat tcatcctcgc cgatcaccct
      961 gctcgctgcg cgcagcggtc cgcaatccga ggacgcggac gctgccggga aggatctggc
     1021 ggggcgcgac ctgctggtcg ccttggcgaa ggtgcccgat ccgcgcaagg cgcggggcgt
     1081 gcgtcaccgg ctggtgacgg tgctcgcggc ggcagtgtgc gcggtgctgg ccggcgcccg
     1141 cagctatgtc gcgatcgccg agtggacccg tgacttgccg gtcggggtgc ggttacggct
     1201 cgggttgggc cggtgcgcgc cgagcgagtc gacgatacgg cgcatcctgc aggccgtgga
     1261 tgctcaggcc ttggacaccg tcgtgtctga ctggctggcc caccgtgtcg catcctcgac
     1321 tgcctcgtgc ccggcgagcg cggtggtcaa gccgtcccaa gcacgatcat cactcccgcg
     1381 ggcggtcgcg gtcgacggca aggccgcccg cggcgcgcgc ggaatcaacg gtcggcccgc
     1441 gcacctgttc gcggccttcg accaccgcag cggggtcgtg ctgggccaaa gcgaggtcga
     1501 gggaaagacc aacgagatca ccgcattcgc cccactgctg gaccgactcg atctggccaa
     1561 cgtggtgatc accgctgacg cgctgcacac gcaggaccgc cacgccacct acctgcacga
     1621 acgcggcgga cactacgtgt tcatcgtcaa gggcaaccgc ccgaagctgc gagcgcaact
     1681 ggccgggctg ccatggcgtg acattccggc cgcgaacacc cggtgcggaa agggacatgg
     1741 ccgggccgag tcacgcatac tcaagctcgc cgcgatcagc gaccagacca gcaccgggat
     1801 catgttcccg cacgctcgcc ttgccgccca aatcatgcga cgccgccgcc aagcaaccag
     1861 cagcggcacg agcacatggc acaccgaaac cgtctacgcg gtcaccgacc tgggctggaa
     1921 ccacatccgt gccgaccatc tcgccgagat catccgcaac cactggtcga ttgaaaaccg
     1981 cctgcactgg atccgcgacg tgaccttcgc cgaggaccac agtcaaatcc gcaccggcaa
     2041 cggacccgcg gtcatggtga ccttgcgcaa cttctcggtc agccgccacc gtatcgacgg
     2101 tcagaacaac atcgccgccg cctgccgcca tgccggccga cacccaattc gagccgccaa
     2161 cctgctcaca taacaaaaag atcaactatg ccgaggccct ggagggaggg gcgccgtggt
     2221 gtcgtctcga ccggaaaacg gggtttccga ggcatccgca agcgaagcga gctgcctcct
     2281 tggccagggt ctgcgcagct cagggcggga aggcaggcag ggactcggca gggagaactc
     2341 cctgcctccc tgattgggca cctgtgactt tctgtgaccg agccagccgg tgtggttcgt
     2401 cgcggagcgc atcctctcgg cgtcggcctc gctccctcac cgtgtgacag cgccgcgcag
     2461 ctcgtcctca gagcgtcgta gaggggttgt gatggcagcg ccgactacgg gtgtttaccc
     2521 cgctaccgtg cacgtcacga gcctttacct gggggtctac cgcggtagag gaccccctct
     2581 accgagcggg gtcaggtaga gccctggcgt ccggggaccg ccgattgttg ctagcaagcg
     2641 agcatcgctc tccaagtaac ggggagtgga gcgttcgagc gcgacagcgc tgtgctgaca
     2701 ctgtcttgcc aggtcatcgc atggtgtatg aacgagactt gacccccacg tcaccatcta
     2761 acagtgggtg cagcggttca ccccgttgtt gattcgatgc ggcccggcct tgccggcatt
     2821 gccccggtga gaggtggttc gtagatgaga cctatgtgaa agtcgccggg cggtgggtcc
     2881 gtctgtatcg ggcggttgat cagttcggtc aggtcatcga cgtcctggta tccgagaagc
     2941 ggcatctggc ggctacccgc cggttcttca atcacgccct tgagcacggc gtacgcccga
     3001 ccgaggtaac caccgaccga gccgcggcta cccacgagtg ctcgatgagc tgctgcccgt
     3061 cgcgtgccat gtcatagagc aatacgcaaa caatcccatc gaatccgatc atggtcggct
     3121 caaggcccga ctgcggccga tgcgcggact gaaacagctc cgctccactc gcgtgatcag
     3181 caccggccac gcgttcatcc agaacctccg gcgcgaccac tacgaactcg gcgtcgatgc
     3241 caacccgaag cgacagctcc cggcggcctt cactgaactc gccctcgcca tccgatcacc
     3301 actccagaca ggctcgccac acccgcattc cgtcaacgca acagtgccct gcttgggtct
     3361 ggcaatcccg cggttcgttg tcgcagtggt tgcgcagtct ttcggtgtgc ggtgacgatg
     3421 gctgtctcct tgtgggccca gtcgggggtc tgtctgttac cttcgttcat cctatagagt
     3481 ttcgatgttg cccccggctg atcagcaaac taccctggaa cgtggggtcg gggcggcact
     3541 atgaagaggg gtcggcgcgt tacgccgcag ctgtgctgca ttcatttctg gtcgcggact
     3601 cggaatttac acgggctaca atgctgggct tttggtactt cgctcaagtg tatctggttg
     3661 agacttacat acgtatctga ttagctttcg cggggtcgag cagggggcgt tagatggatt
     3721 ttcgctgggc gcgtacaaat atgttcctgt tggtccttct ggcgatcgcc gtggtcaccg
     3781 tcggcgtatt gaccacccta gtcatgtacc aacaacacga ccagagaacg gttaacggac
     3841 aggtccgtct cgaaacagat cccacggtac ccgccgcgag ctttcctgat ggcgcggaca
     3901 taggcgccaa tccgaacgcg gtggcccacc tcgacccgac tactacagct actacacccg
     3961 atcccgccaa cgcaccggtc gggttggcgt cccagccggc actcgcttct ccggcactcc
     4021 aggtggcccc accgccgtct ccccagacac cgctcaaacc gaaaacgttg cctcatcggc
     4081 gagtaaatcc ggtcccagca ccgcacccgc cggccgcggc gcacctgata gctccagcac
     4141 cccagactga tccaaaccct cttcccagat ccaatactcc ggttaagcca ggctcaccgg
     4201 agggctggtg actcccaggc gcaggaactt ctctgctcca catgccctca aagcagagcc
     4261 cgtcagactc ggcggtcaag ccgaccgatc ttgacaccac tgattcgacc agcacctcga
     4321 agcgctcgcc aaggcacccg tgtccaccgc aacggcccac cgcaacggtc ttcgaggtga
     4381 tgctgggcat ggggggcact gatgcgctat cccgtcaggg taggcgggat cgccgagcag
     4441 acccacacgg ccgaaagcac ggagcctcgc acgggcttcg tctgtggcta cggtgcgatc
     4501 ggcgggtagc tcgccacgtg ctggtcgtga tcgccatgga gcagccgccg gtgtcggggc
     4561 agctctgtgg tgatcgtcgt ttatgccgga cagaccgcgg cgacccagtc accggtgccg
     4621 gcgatgtgcg ggccatgatg actctggtcg cgggtgcaga tccagagcag accgaagact
     4681 ggtgagagct ggtcagtcca ctcgaactgg cacatgtgag gctcgttgtc cgcaccgtgg
     4741 tggaaggtgg gatctggatc gcctacagcg atgtgttcaa gctcgtgttg gtggagtttc
     4801 ccgcttcgcg actggcggtg ctgcaatttt gtcggggcca ccatgtcgac cttccaccgt
     4861 caagcactct gtcgataaag gtaacctttg cgggcacaaa atacaaagac tgggatacct
     4921 cgccggttgc tgcaattgca tcggcgtgaa cagatgaaaa ctcatccgca cgtgcacgaa
     4981 ttgcaggtcg atccgcgcat cacgctgccc tttagtcacc ctttttacgg cggcagccga
     5041 ggtcatcgct agcaaccggg cctcgcattt cctagccacg gacctgcacg gcccggggat
     5101 cctgacaggc tcgcagccag cggccccagg tcgggaatgg gataatcacc gcacgcaggc
     5161 cagcgaggaa cgccagcggc aggtccgtaa agccgtccac agcgttggtc gctgtcagcg
     5221 acgggctgta acgcttcgct gcggacggcg actgaagaga tatccaggtg catgactctc
     5281 cagcccccgg caggtgaagc cttgtcgacc cgcacttctg ctgtcccacc gtcggttagc
     5341 acaccactgg ctacgccctt ggcttgtttg gcaccatcgg cgcagttcgg caggcctgct
     5401 caggtcgtcg acgatctttc tgctaaggga cctgtagcag agctgttgga gcatcctgcg
     5461 ctgttgacca ggtcggctat cgacctcgca ccctgtccgt ggtgctggat gatcctgttg
     5521 ctgccgcgcg atccctacgc aaccatctgc gtccggctaa cctgatggag ctggtcgtca
     5581 tcctcgctga ggcggcagca gacggtctgc gcgagcggac aacgacgcag tagccgcttt
     5641 gcgaaaaggc tgcctgtggg tggtttcgag gatgcccgtc tgacaccatg tgcccagcgg
     5701 ttcaagggtg tcctggcgtg gtgttccgtc gcgacgcggc gcaccagtgc aggcatgacc
     5761 cgggtgactg ctggttggtc gatgaaccta tgtcgaggtc gccggcaggt ggagtctgtt
     5821 tccactcagg aaacgcgtca gtgcccgggc gatcactgaa gttgtcggaa taggctattt
     5881 gggtggcttt catgaactag tggcacttag aagggtccac acgtttaggt aggtggagct
     5941 ggaattcttc ccaaggtgag ccccatcgca ctgaccggtg ggggttttct gtttgtaggt
     6001 cttttttgct gacccagaag ggtgtggtgg ccatgacgtc aaagatttcc gtatcgcgtt
     6061 ggttttgtca atttagttgg gtgagcaggt gttaagctgg gtttggctga tcatctccgg
     6121 cgcgattccg gtcgtcatgc tggctatgaa gttggtcttt tgctggatgg tctacaaccg
     6181 tgacggcgat cgtgaagctc tcgctgtcgc cgcacaggtg accgcaccgg gttggagcgc
     6241 gttgcgtcgt cgcgaccatc gcagctacgg tgccggacgc agtaatctgc actcgatcgg
     6301 ctctggggtg gacctgccgc gcaacggcgt cgaacacagc atcggggaac gatagctcgg
     6361 tgccgtcacc ggttcggagg tcgatccgct cgcccgaatc attgcgcagg tccgcagcaa
     6421 gtgtccgagt tggccttgac cacagtgagc cggttgccac gctgaggaac cagcgagtcg
     6481 tcccacggtg agcctgtcgg cttcctggtg tccgagctga cccgcatctt gctgattcgt
     6541 tggccggtca cctaaggaag acgcattcat cgagccgaaa ggtgctcgta caaccctcag
     6601 caacttccac accgacgcga gtgattgatt tgcggccccg gttgaccggc cgtcagaagc
     6661 gatagtaatg atcccggtat gggctgacct gtgcaattcc cgtcaaaggc tgacctgaac
     6721 tgcgaaagta tatctcggta gttctcaaga cttctcacgc gtgcccggcg tttgacggcc
     6781 tggagacggc ctgatcttgg tccgcggctg ccagcagctt tgctgaactt gcgtgcatcc
     6841 tctagcttcg atgtttcatg ctggcgataa gatgatcttt gatctcgttg gttgatctcg
     6901 ttggtgtcgg ttcgattggt gggcagaggt gattcccggc cctgcggtgc tggccggtgc
     6961 tctgggtctt ctcgtcgggt tgggtggtgc gggtcagggc gcggcgaagg cggtcaggcg
     7021 agcgtgggtg gtggtgatct cgtggaccta gggccaggtc gggttgatct tgaggagttg
     7081 gcgtcgtccg gtgcgcacga ggcgtccggc ggcggcgagg atgcgcagcc gcaggcattt
     7141 gaattcgtag ctggcggcgg gtccggtcaa ggcgaggcgc tgggtccagg cgagtaggtc
     7201 ggtggccagg gcggtgatag ctaaccagat ccgattttgg gccagatcgt ggaaggcagg
     7261 ttgcgcctcc cggtgttctt ggcgttgcga atgcggtcct cgacacgggc gtggcggcgg
     7321 tggcgtagct ccaaatcggg cagtggcccg ccgggggtgt tggtgagcat gccgatgatg
     7381 cgatggccct cgacatcggt gatgcgtagc tgcgcgccgg ggtgtgggcg ttcgcggcgc
     7441 aggatcagcc gggtcccccc cggccaggct gagaggtcga ccaggccggt ggcctcggcg
     7501 ccggcggccc cgtcgcgggg ctcaatcacc gggccgggct cacccgcgtg gggcgctcgc
     7561 acctggtagg cgggtgtcca ggcctgccca gggagctggg ccaagaccca gtggatatcg
     7621 aaatggtgca ggtaggcacc caccgggaac tccaccccca tcgccgccag atgatgggtg
     7681 aaggcatgcg tggcacctgc cgcgtcggta cgcaccagca ccgggcgccg gccgtgtgca
     7741 ccaggcgtgc gccacggttc gggcagctgc gtcagcgcgg cgtcgaacac ctcgacgtga
     7801 tcggccgcgg tattcgaacc cgcattgccc gggcgcagca gcccggacag gggctcccca
     7861 gtacccccat cgccgtgatc ggcatacgcc agcagcggag ggaacccgaa ggtctttttc
     7921 catgtccggg tcgcgaactc cttcaccgaa tgcgcaatga ccacggtggc gtcgagattt
     7981 atcaccaccc gcccgtcggc gaccggcgct ccgggccggc cccatacccg cgcccgggcc
     8041 accgcccggg ccgaagcaat cgcacccagc gccgcatcga catccccagc cagcgtggca
     8101 atcagccgcg acaccgtcgg atccgaggcc accaggccga acacaccggg ctgcgcgcgt
     8161 aacaccgcaa catcagcggc gcagtctcca cccagcgcga ccgccacgac cacatcaagc
     8221 acgatcttgc ccggatcgta gatcgccaac ggccgacgcc agggccccag ccgggccgag
     8281 cgctcccggg atagctcagc gccacgagca gtcgccacca gcagcgaccc acccgcgtgc
     8341 gagaccaacg atcactgaca accacgggag acgatgttta tccttcacct gcgaagtgcc
     8401 tctcactccg gtccgatcga gccttgagaa ctccgatcca accggcctga gcaggcactt
     8461 tcgcgcatct aa
//
LOCUS       DASVXZ010000407         2134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1097680, whole genome shotgun sequence.
ACCESSION   DASVXZ010000407 DASVXZ010000000
VERSION     DASVXZ010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1097680"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VF788_08475"
     CDS             <1..778
                     /locus_tag="VF788_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX8934212.1"
                     /translation="PAGGGDADLSVVGAVLADRSRCKILLALADGRALPAGMLASEAG
                     VSAATASSHLHKLCAAGILEVFRTGRYRYYRLAGDEVGQLIEAVARLAPTQPVRSLRE
                     GTRAHAIRLARCCYNHIAGRLGVAITAALINQGCLSGHDGSIELDQLDRGRLAGGLRD
                     GITYQLTETGRCALGELGVALPVDCTVSCCVDWTEQRHHVAGRLGHALLDALTAAGWI
                     RAAERSRALITTEAGKRGLREHLGVPWPPPAVSGVRSGHS"
     gene            826..1440
                     /locus_tag="VF788_08480"
     CDS             826..1440
                     /locus_tag="VF788_08480"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934213.1"
                     /translation="MTTDPDPVNHHAGHPGFAGLTGLLAGLAMIVAGSTAAQLVADLA
                     AVSDADNVVDVGCGPGSAVREAARRGARVIGVDPAPVMLRLARALTRDRPGISWAEGT
                     AEDLRLRGGSATVVWSLATIHHWSDVTAGLAEVKRVLRAGGRFLALERQVPPGATGLA
                     SHGWTAQQAEAFAAQCQAAGFEDVRVEQHTPGRRAVFIIKAIRP"
     gene            1724..>2134
                     /locus_tag="VF788_08485"
     CDS             1724..>2134
                     /locus_tag="VF788_08485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HEX8934214.1"
                     /translation="MLDRTIIDALFPADLPESGHWEQHYPPRRLPEGAEVTRFGPSPT
                     GFVHIGGIYVASLDRDIAAHSGGVYLVRVEDTDQSREVEGALAQFARAFDYFGIPSDE
                     NDEHSNYGPYRQSVRDRIYLTYVRELLHQGKAYLC"
BASE COUNT          336 a          726 c          700 g          372 t
ORIGIN      
        1 cccagctggc ggcggggatg cggatctgtc ggtggtcggc gccgtgctgg ctgaccgcag
       61 ccgatgcaag atcctgctcg cactcgccga tgggcgcgcg ctccccgctg gcatgctggc
      121 tagcgaggcg ggtgtgagcg ccgctaccgc tagctctcac ctgcacaaac tctgcgccgc
      181 tgggatactt gaggtgttcc gcaccgggcg gtaccgctac taccggctgg cgggggacga
      241 ggttggccag ctcatcgagg ccgtcgcacg gctcgcacct acgcagcccg tccgctctct
      301 gcgggagggt accagggcac acgccatccg cctggcccgt tgctgctaca accacatcgc
      361 cgggcggctc ggcgtcgcga tcaccgctgc attgatcaat caaggctgtc tcagcggcca
      421 cgacggcagc attgagctcg atcaactgga ccgcggccgg ctcgctggtg ggctccgcga
      481 cggcatcact taccagctca ccgagacggg ccgctgcgcc ctgggtgagc ttggggttgc
      541 gttgcccgtg gactgtacgg tgagctgctg cgttgattgg acggaacaac gccaccacgt
      601 cgccgggcgc ctcggacatg cgttgcttga cgctctcacg gcggccggct ggatccgcgc
      661 cgccgagcgc tcccgcgctt tgatcacgac cgaggcgggc aaacgtggtc tccgcgagca
      721 tttaggcgtg ccttggccac cgccagcggt gagtggagtt cgatccggcc actcgtgaga
      781 attcaaattt gacttcaagc cagcttgaag ccgcaaggtg gtcacatgac cactgatcct
      841 gatcctgtca atcaccacgc cggtcatccg ggcttcgccg ggttgaccgg gctattggcc
      901 ggactcgcca tgatcgtcgc gggaagcacc gccgcccagc tcgtggctga tctggccgcc
      961 gtgtcggatg ctgacaatgt tgtcgatgtc ggttgcggcc cgggtagcgc tgtccgagaa
     1021 gccgctcgcc gcggggcccg agtgatcggc gtggacccgg cacccgtgat gctccgcctc
     1081 gctcgggcgt tgactcggga ccgaccgggc atcagctggg ccgagggcac cgcggaagat
     1141 ctccggctgc gcggcgggtc ggcgacggtg gtgtggtcgt tggcgaccat tcaccactgg
     1201 tcagacgtca ccgcgggact cgcggaggtg aagcgggtac tccgcgcagg cggccggttc
     1261 ctcgccctcg agcgccaggt ccctcccggc gccaccggcc ttgccagcca tgggtggaca
     1321 gcccagcagg ccgaggcatt cgcagctcag tgccaggcgg ccggcttcga agatgtgcgg
     1381 gtcgagcaac acacgcctgg tcgacgagct gtcttcataa tcaaagcgat ccgaccgtga
     1441 ccaccgctca gccgtatcga agcgaccccg cgtggtgagc aactcgcccg tctcgagcca
     1501 tgtcttgagc ccggagagaa tcatcggcca gccgactaga gctcgccgtt gtgctgttct
     1561 tgagaccgct gagcgcagcg gcccaaggct cggcgtactt gctcacccac cggtcaaacc
     1621 ctcggtggcc gtggttcagc aggcacggtt ggtagccttg agcgtctgtc cgacaccccg
     1681 ttcgtgatcg ggttcggccc cggaagtgag actgacctat ctgatgctgg accgcacgat
     1741 catcgacgca ctgttccccg cggacctccc cgaatccggg cactgggaac agcactaccc
     1801 accgcgacgg ctccccgagg gcgctgaggt cacccgattc ggcccgtcac cgaccggttt
     1861 cgtgcacatc ggcggcatct acgtggcgag tctcgaccgc gacattgcag cgcactccgg
     1921 gggcgtctac ctggtacggg tggaggacac cgaccaatca cgcgaggtcg agggcgccct
     1981 tgcccagttc gctcgcgcgt tcgactactt cggtatcccc tccgacgaga acgacgagca
     2041 cagcaactac ggcccctacc ggcagtccgt ccgcgatcgt atctatctga cctacgtgcg
     2101 ggaactgctg caccagggca aggcgtacct gtgt
//
LOCUS       DASVXZ010000408         5651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_492358, whole genome shotgun sequence.
ACCESSION   DASVXZ010000408 DASVXZ010000000
VERSION     DASVXZ010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5651
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492358"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..399
                     /locus_tag="VF788_08490"
     CDS             187..399
                     /locus_tag="VF788_08490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934215.1"
                     /translation="MLENKGRRAWAGGAVEPLASGPVSGLADSLPDAVYLGLVLAGRA
                     CNAVVPRSLAGLQAHADPDLDAYRAT"
     gene            849..2580
                     /gene="ctaD"
                     /locus_tag="VF788_08495"
                     /pseudo
     CDS             849..2580
                     /gene="ctaD"
                     /locus_tag="VF788_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
     gene            complement(2808..3617)
                     /locus_tag="VF788_08500"
     CDS             complement(2808..3617)
                     /locus_tag="VF788_08500"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8934216.1"
                     /translation="MAPSVPARLLGLSVQHYPAVEITVVVVDGELDLLTAPLLEQRLR
                     GQLVARPAHLILDLESVRFLGASGLSCLLRARELVQASGTQLHLAGLITRVVGRAVQV
                     TGLLDLFSTYPTLLHAVIELADRPEINTLDRRIPAPVLTALWCCSVGITWTLELRVFD
                     HDTRLGALVDWISSGVPVTQPVPDTLAPELLAARGLWLFRDVFPAPPTGSRHRIGYAS
                     ADAALITLAHLVGDDATRTGVHPVILAAWQTAGFSTAAATGWIRVGCQFPQ"
     gene            4037..4309
                     /locus_tag="VF788_08505"
     CDS             4037..4309
                     /locus_tag="VF788_08505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934217.1"
                     /translation="MCPSGAARRIAYQSRGGDLARCRCVLLGGKGLIRAFYTDYCLNL
                     MDGFGFVTALRGNSTSARHRRYSIIHLADLAFPLTRQPAADPSGPA"
     gene            4339..4716
                     /locus_tag="VF788_08510"
     CDS             4339..4716
                     /locus_tag="VF788_08510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rid family hydrolase"
                     /protein_id="HEX8934218.1"
                     /translation="MESIVISTEKALSPVGPHSQALRRGNILAIGGQVGTDPHSGILC
                     DGIHEQLRQAMTNIQELLKEASASFGDVILLHVYLTEEGHFREMNDVLSEFLTEPFPA
                     RTTVYTQLPPDMLVEIDALAVLE"
     gene            5109..>5651
                     /locus_tag="VF788_08515"
     CDS             5109..>5651
                     /locus_tag="VF788_08515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934219.1"
                     /translation="MVQLSRAAEDRAADEVGAVPGELRWRRYRPGDDAVPEGGSESLD
                     LLFEAVSEGFPGRACSCPDLLAAGVTADLPEHMGVGPQRLSARRAARTGGGHLPPGDQ
                     DRASGETHDDVRCIRSSHPPDATCIVPAPAVSPADHGTGARRAQSSRRIPTLILEWYK
                     ERNSKNLAHGRLTPWPRRCCV"
BASE COUNT          973 a         1813 c         1740 g         1125 t
ORIGIN      
        1 ccggagagcc gtcaacgctc ctgctgccgt ccagcacctg caccaaggcc gccacctcct
       61 tgggcagggt cgcttggagc aactgcaccg cccgcacgtc gccggtcaac gccaccagct
      121 cggcgtccac ctgccgccca cggttacttt ggcggcgttc cacgacctga tcatgccgtt
      181 gtcaccgtgc tggagaacaa gggcaggaga gcgtgggccg gcggcgcggt cgagccgctg
      241 gcaagtggac ccgtgtccgg ccttgccgac agcctcccgg acgcggtgta tctcggtctg
      301 gtccttgccg gtcgagcgtg caacgcggtg gtcccgcgga gtttggccgg tctccaagcc
      361 catgctgacc ccgacttgga cgcctacagg gcgacctaag tcactctgta gcggtgttcg
      421 tggtgctctc ccagcgggta gctccgctgc gtgtcgaatt ctgtcgcctt cgacttcgca
      481 cgtggccgtg gctaagtggc aaaggtcacc gcaccacgcg gtccccggcc gctggatttc
      541 tcggccgttc gcgctgagcc ggcgcacgat atgcgtctgc actctcaatc cgatcagcgg
      601 gccgtctgct agctacttgc ttcgaggagc gctctctgcg tgaagcgcgc gcttacatct
      661 gtcacgagag tatgccgagg tcatgacttg tcagcaatgg gcactacagc aggttggatt
      721 cacgtcgtca tcgacccggc tgttcgactg agtggtggac gtctgcgcga tctgtcccgc
      781 cagcaaagga tttttctgat ttgcgctgcc gtcgggtagg tacctttaag cgcgatacga
      841 ggttttagat gtcaaccgtg ttacccccac ccaccaggcc cgatccgtcg cgtgtccgcg
      901 cgccgatcgg ctcgcggctg ctggcatatt tatcgacgac cgaccataag gagatcggca
      961 aactgtacct ggtcacctcc ttcggatttt tcatggtcgg cggcgcgatg gcgatgttaa
     1021 tgcgagccga gctagcccgc ccgggcctgc agttcttgtc ccccgagcag tacaaccagc
     1081 tgttcacatg cacggcacga tcatgctact gctctacgca accccgatcg tcttcgcttt
     1141 tgcgaacctg gtgctgccgc tgcagatcgg ctccccggat gtcgcttttc cccgactgaa
     1201 cgccttttca tattggctat ttttgttcgg cggtctcacc gtggtgtcct ggttcctcac
     1261 cccgggcgga gtggcggact tcggctggtt tgcctacacc cctctctcgg acgccatcca
     1321 ctccccaggc gccggcggcg acttgtggat catggggctg gtcgtcgctg ggttaggcac
     1381 gattctgggc gcagtcaaca tgatcaccac ggtggtctgc ctgcgagcgc ctgggatgac
     1441 gatgttccgg atgccgatct tcacctggaa tatttttgtc acgtcgatcc tcgtgctgtt
     1501 ggcttttcct atcctgaccg cggcgctgct cggcttggag gccgatcggc gactcggagc
     1561 gcacgtgttc gacccagcca acggcggggc gatcctatgg caacatctgt tctggttttt
     1621 cgggcacccc gaggtctaca tcgtcgcgct gccatttttc ggcatcgtgt cggagatctt
     1681 cccggtgttc agccgtaaac cactattcgg ttacaagacc ctaatcttcg ccactttggt
     1741 gatcgccgga ttgtcgatga tagtgtgggc tcatcacatg tacgcgaccg gggcggtcct
     1801 gatgccgttc ttcgcattca ccaccttttt gatcgcggta cccaccggga tcaagttctt
     1861 caactggatc ggcaccatgt ggcgggggca gctgacgttc gagacaccga tgctgttctc
     1921 gatcggtttt ctcgtgacgt tcctccttgg tggattgact ggcgtgctgc tggcggcccc
     1981 ggcgatcgac tggcatgtca ccgacaccta cttcgtggtg cccatttcca ctacgtgttg
     2041 ttcggcacca tcgtgttcgc caccttcggc gggatctact tctggtttcc taagatcacc
     2101 ggacggatgc tggacgaggc atggggcaag ttccacttct ggacgacgtt catcggattc
     2161 catctgacgt tcctggtgca acactggctc ggcaacgcgg gcatgccacg ccgctacgtc
     2221 gactacctgc ccaccgacgg gttcaccaca ctgcacatgg tctcctcgat cggcgccttc
     2281 gtcctggggg cctccacgct gccgttcctc tggaacgtgt tccgcagcta ccgctatggc
     2341 gaggtcgtca cggtcgacga cccttgggga ttcgccaatt ccctggaatg ggccaccacc
     2401 tgcccgccgc cccggcacaa cttcaccgaa ctgccccgca tccgctccga gcgacccgcc
     2461 ttcgaacttc actaccccca catggctgac cggataaggg gtgaggcctt cgtctacgcc
     2521 gaccccgcga ctcaacacga ccgcccagac aatgacccat cccaacacca ccgacagtag
     2581 aaacatgcag gatggcgatc ccagcggttg accagttgcc acacagcggt ctggtggctc
     2641 ttgcggcggc acgtagttgg tgtgacgaaa ctttgcttcc agcaccacga tgtggggccg
     2701 cgcacgaccc gggtcaccag ctggcgggca acggctaatg gcccgaagtc aagtggtgta
     2761 gcgcgaggta gcggccacgg ctggccgccc gagcagcgtt ggctggttca ctggggaaat
     2821 tggcatccca cccttatcca gcccgtagca gcggccgtgg aaaacccggc tgtttgccat
     2881 gcggccagta tcactggatg taccccggtc cgggtggcat cgtcacccac caggtgagcc
     2941 agtgtgatca gcgcggcgtc ggccgacgca tagccaatgc ggtggcgact gccggtagga
     3001 ggcgccggga acacgtcgcg gaacagccac agcccgcgtg ccgcgagtaa ctcgggcgcc
     3061 agcgtgtcgg gcactggttg ggtaacgggc acgcccgagc taatccagtc caccagggcc
     3121 cccagcctgg tgtcgtggtc gaacacgcgc aattccagtg tccaagtgat gcccaccgag
     3181 cagcaccaca acgcggtcag caccggcgcc ggtatccggc ggtctaacgt gttgatttct
     3241 ggtcggtcag ccagttcaat cacggcgtga aggagggtgg ggtaggtgct gaacaggtcc
     3301 aacaaaccgg tgacctgcac cgcgcgcccc accacgcggg tgatcaaacc ggccaggtgc
     3361 agctgcgtcc cactggcctg gacgagctcg cgggcgcgca acagacaact cagtccgctg
     3421 gcgcccagga agcgtactga ttccaggtcc aggatcagat gcgccggcct ggcgacgagc
     3481 tggccgcgca ggcgttgctc aagcagcggc gcggtcagca ggtctagctc tccgtccacc
     3541 accacaacag tgatctccac cgcggggtag tgctgcacgc ttaaccccag cagccgggcg
     3601 gggacagacg gcgccacgct acctaccggg gcgtgatcag ccgcagcggc tcgagctaac
     3661 gggcacgttg aaggcgcagc ggccgacggg tttgtttgcc agtcccacgc gtctgcaatg
     3721 ttggtcacag caccgttcct tccgcaggcc ccgatcgacc atgcggctta ggtcgtggtg
     3781 catcggccat tgagttaccc accttgtact gagccgaaac tgtgaccgac aatgatctac
     3841 gccattagcc cgtaaaatga gcttttgatg cgggggttgg ccggctgctc ctccggaaga
     3901 acctcgacaa cgcctgcgcg agatcactgt ggtcgacgtc accaatgtcc gcttgtttct
     3961 tgccttgcga tttccgagga gccgtgcatg gcccgtggtc gtgaagtgtc accggtggcc
     4021 tgccggcgat gacaccgtgt gcccctcggg cgcggcacgc cgcattgcct accaatcgcg
     4081 gggcggtgat ctcgcccgct gtcgatgcgt gctgctcggc ggcaaaggat tgatccgggc
     4141 cttctacacc gactactgcc tcaatctcat ggacgggttt ggtttcgtga ctgcgctacg
     4201 ggggaactca acgtcagcgc ggcaccggcg ctactcgatc atccacctag cagacctggc
     4261 cttcccactc acacgccaac cggccgcaga cccgagtggg ccagcctgag cttacatgcg
     4321 acaagaaggg agactacgat ggagtcgatc gtgatctcga ctgagaaggc actgtcacca
     4381 gtaggaccac attcgcaggc attgcgtcgt ggaaatattt tagcaatagg tgggcaagtc
     4441 ggcactgacc ctcactcagg catcctgtgc gatggaatcc acgagcagtt gcggcaagca
     4501 atgacgaaca tacaagagct tctcaaagag gccagcgcat cctttggtga tgtgatactg
     4561 ctgcatgtgt atctcaccga agagggtcac ttccgggaga tgaacgacgt cctgagcgaa
     4621 ttcctgacag aacctttccc ggcgcgcaca accgtgtata cacaattgcc gccagacatg
     4681 cttgtggaga tcgacgctct cgccgtgctc gagtaaagcg gcatgatacc ttaacaaacg
     4741 aacgagtcgt accccggcag gtcgggtgat cgcttgtacg gctgaggggc ctcctggtgt
     4801 cgggtaattg gtcacctatg gtgaccttgg agagggcgct ggtggcggcg gtctgcgggt
     4861 gagcttcggg ctcgtgaaag tgatcgagcg gcccagcccc ggagagggcg acgcctccgc
     4921 tatcggccga tcgcgtaccg cttggtggcg acggcgaacg gctggttacc cgccgaaaac
     4981 cattcagcac ggcgttcgcg ccgcatgccc cgtgtacggc gccgccgggg tgggccgacg
     5041 acgatgccag gtacaggccg gcgatggggt ctcgggcgcc cgagacctgt ggtgggccgg
     5101 aacaccggtt ggtgcagctg agtcgtgccg ccgaggatcg cgccgccgac gaggttggcg
     5161 ctgtgcctgg tgagttgcgg tggcgccgtt accgtccggg cgatgatgct gtcccggaag
     5221 gcgggagcga atcgctcgat ctgctgttcg aggcggtcag cgaaggtttc cctggtcgcg
     5281 cttgttcatg cccggatctc ctcgccgccg gcgtcaccgc ggacctgccg gagcacatgg
     5341 gtgtaggccc acaacgattg agtgcccggc gagcggcacg gaccggcggt ggtcacctgc
     5401 cgcctggcga tcaggaccgg gcgagcgggg agacccatga tgatgtgcgc tgtattcggt
     5461 catctcatcc accggacgcg acgtgcatcg tgccggcacc cgctgtctca cccgccgacc
     5521 atggcaccgg cgcgcgccgc gcccaatcca gccggcggat tcccacgctg atccttgaat
     5581 ggtacaaaga acggaacagc aaaaaccttg ctcatggccg cctaacacct tggccacgcc
     5641 gctgctgcgt g
//
LOCUS       DASVXZ010000409         2646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1366215, whole genome shotgun sequence.
ACCESSION   DASVXZ010000409 DASVXZ010000000
VERSION     DASVXZ010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1366215"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /locus_tag="VF788_08520"
     CDS             complement(<1..430)
                     /locus_tag="VF788_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HEX8934220.1"
                     /translation="MRRRCRRVPALRSSFAGFRYPPAVILVAVRWYLRYALSYRDVEG
                     LLAERGVIVDHVSVYRWVQRFTPLLIDAARPCRHTPGDRWLVDETYIKILGRWVYLYR
                     AIDQFGQVIDVLVAEKRDLAATRRFFTHALKYRRSPTEVDT"
     gene            933..1286
                     /locus_tag="VF788_08525"
     CDS             933..1286
                     /locus_tag="VF788_08525"
                     /inference="COORDINATES: protein motif:HMM:NF036989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934221.1"
                     /translation="MSARCVRRQLVSRAAAVNDPIVRRTLILGTQHLSRRDLEELRDA
                     GQMIELRVLGWATIADDVTAALALATVASVEVIGAFRAPRAVKAASPPAPSPEQLPHS
                     PARRGPLWVPDRSSI"
     gene            complement(1881..2156)
                     /locus_tag="VF788_08530"
     CDS             complement(1881..2156)
                     /locus_tag="VF788_08530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934222.1"
                     /translation="MWALSGEAGVGVTEIGRHTGVMSRLYIVPGLGNKRLDKVTVRDV
                     QTWLDKVRTTCQCCPGQRHAPSGTSPSLLRSRPMLRRGARLRTVSDR"
     gene            2257..>2646
                     /locus_tag="VF788_08535"
     CDS             2257..>2646
                     /locus_tag="VF788_08535"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8934223.1"
                     /translation="MGQAANVVHRKMAAFNAQDEKEIRALLSPNVEWAIPGGLLRGND
                     QAIAYFSAFWEAFPDLELTATRVVEEGSAVVTQARAEGTHRGTFRTPGGDIPPTDRRV
                     SLMYSEHFEVEGGVIVSASLHLDRLELL"
BASE COUNT          490 a          820 c          836 g          500 t
ORIGIN      
        1 cggtatccac ctccgtcggt gatcggcggt acttgagcgc atgagtgaag aaccggcggg
       61 tcgccgcgag atcccgtttc tccgcaacga ggacatcgat gacctggccg aactggtcga
      121 tcgcccgata caaatacacc catcgtccca agattttgat gtatgtttcg tcgacgagcc
      181 accggtcgcc aggggtgtgt cggcagggtc gcgccgcgtc gatgagcagc ggggtgaacc
      241 gctgcaccca ccggtacacg ctcacgtgat cgacgatgac gccccgttcg gccagcagcc
      301 cctcgacgtc ccggtacgag agcgcatagc gcaaatacca acgaaccgcc accaggatca
      361 cggccggtgg ataccggaac ccagcgaagc tcgacctcaa tgctggtacc cgacgacaac
      421 gacgacgcat cgaccaatcc tgcctgatct tgctctccac cgacgcaacg gcctctctct
      481 gactatttcg gaccgccgtg accggcctgc tgggtagttt tgatctcgtc tccgcgcgtg
      541 ccgtgcgaag gatcgcctcc ctggcctagc gtggaattct gtccgatgtg ggtcgccgct
      601 gaggacgagg taccttcagg attcgcgttc tggctcgacg gcggatcccg gaaatcagaa
      661 ccttaaggat cggcgagcgc agtccctgct ggaagcacga acgccagcgt tgccgctgcc
      721 gcagcgataa gaagcttcat aagatgacct ttctctgatc ccgtttccgc gcggattgcc
      781 tcgcgccctc cgtatatcag cccgtcgcga caaactgtta cgcagtgtct cgtaccagag
      841 ttgtgagatt cctgactgcc gaaaccgtcc attgccgatc accagaggcg gcgcctcact
      901 actagccccg atttttcgtc atgatcggga tggtgtccgc tcggtgcgtc cggcgccagc
      961 tggtaagccg ggcggctgcg gtgaacgacc cgatagtgcg ccgcacgctg atacttggca
     1021 cccagcacct cagccgccgc gatctcgaag agcttcgcga cgccgggcag atgatcgagc
     1081 tgcgcgtcct gggctgggcg accatcgctg acgacgtcac tgctgcactc gcgctggcca
     1141 cggtcgcctc ggtggaggtc atcggcgcct tccgagcacc gcgggcggtc aaggctgcct
     1201 cgccccccgc accgtcccct gagcagttgc cgcactcgcc agcacgacgc gggcccctgt
     1261 gggtgccgga taggtcatcc atctaagtga cctgggcaat tcgtagatca gtccgccgag
     1321 ccgatcgcga catcggagtc aagtccgggt ggtgatgcgg ccataatcgc cggtcatgcg
     1381 cagaaaagtt gtcgcgtcga cggctaccca ctgaatgatg ggcactcgga tgagatcggg
     1441 cagtcgggga ctgatcgact gatcgcgcgt cgtggtcgat gacctagctc ggcgaatatg
     1501 cgatggtcac ctgcacgatc agcggtggtg gctaccacgc ctcacctgaa gcgtaatgct
     1561 ggtgtgctgg gtgtcctact gggcggcgcg gtctggatgg gccgctgcca ccgcgcctgc
     1621 ggcacaggca ccacggggac caggctgggg gtggcgttca cacggcaatt gcccggatac
     1681 ggtcatgatc accatatgtg cgggtgcgtg acgaactgcg tgacaatcac cacggatgac
     1741 cacggacttc cggggatcct gagggatgcc tgaacaggtc aaacccgctg aaatgcgctg
     1801 gtcgggctct attgttattg cttcgggacg aagaggccgt gggttcaaat cccgccactc
     1861 caacagcctg aaatagcagc tcaacggtcg ctgaccgtgc gcaggcgagc accgcggcgc
     1921 agcattggcc gactgcgcag cagcgacggg cttgttccgc tcggcgcgtg tctttgccct
     1981 gggcagcact ggcaggtggt gcggactttg tcgagccagg tttgcacgtc gcggacggtg
     2041 accttgtcga ggcgtttgtt gcccaggccg ggcacgatgt agagccggct catcactccg
     2101 gtgtgtcgcc cgatttcggt caccccgacc ccggcttcgc cgctaagagc ccacacggtg
     2161 tcggcgagcc gacgttgcca atgtcatgta cctgacagcg ggcggcgtga tgcgcggaga
     2221 gaattccggt tgtcggcaca acgaaaggag caggtgatgg gacaagcggc gaacgtggtg
     2281 cacaggaaga tggcggcgtt caacgctcag gatgagaagg agatccgggc gctattaagt
     2341 cctaacgttg agtgggcgat cccaggcggt ctgcttcgag gaaacgatca agcgatcgcg
     2401 tatttctccg ctttttggga ggcattcccc gacctggagt tgaccgccac acgcgttgtc
     2461 gaggaaggtt cggccgttgt tacccaggcc agagctgaag gaacgcatcg tggaacgttc
     2521 cgcacccctg gcggagacat ccctccaacg gaccgacgcg tgagcctaat gtactcagag
     2581 cacttcgaag tcgagggagg ggtgattgtt tcagcgtccc ttcacctcga tcgcctggag
     2641 ctcctc
//
LOCUS       DASVXZ010000410         5355 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1007845, whole genome shotgun sequence.
ACCESSION   DASVXZ010000410 DASVXZ010000000
VERSION     DASVXZ010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5355
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1007845"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..836)
                     /locus_tag="VF788_08540"
     CDS             complement(<1..836)
                     /locus_tag="VF788_08540"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX8934224.1"
                     /translation="MAHPFPARRLVHAFAVLCAVLAVGCGTSSAPPTGAAQATDNAEW
                     TKHVREFENHYFALNPPFAVQQGRHEYDGRLPDWTAAGIRAEAQWLHAQRTQAEKFDQ
                     NTLSAAQRFERQYLLSRVDTDLFWLEEAEQPFTNPEFYLGALDPSVYLTRPYAPAEAR
                     LKAFIGYARAVPTAAAQIRANLRTPLPKSFIKYGVDGFGGFPDFYRKDVPKIFAEVKD
                     PALQADLSRAVEPAARAMQDLADWLSSGNPQATENFALGSVKFADMLRMTERVTTPIA
                     EL"
     gene            complement(945..2384)
                     /locus_tag="VF788_08545"
     CDS             complement(945..2384)
                     /locus_tag="VF788_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016337178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GuaB1 family IMP dehydrogenase-related protein"
                     /protein_id="HEX8934225.1"
                     /translation="MRFVDGRGAGYELTYDEVFLVPSCSDVESRFDANLSTVDGSGTT
                     IPLVVANMTAVAGRRMAETVARRGGLVVLPQDVDPAVVAETVSWVKARHLVVDTALIL
                     NPQDAVADAINLLPKRAHGAVVVLDGLGHPVGLVTETELTEVDRFTRLADVAQTDLVV
                     VSADTEPRKIFDQLHHRRQELALAVDAQDRLVGVLTRTGALRAELYSPALDTAGRLRV
                     AAAIGVNGDVTAKTDALLAAGVDVLVVDTAHGHQRKMLDALRAVRSRGPDVPVVAGNV
                     VTAQGTRDLLEAGADIVKVGVGPGAMCTTRMMTGAGRPQFSAVAECAAAAREAGSFIW
                     ADGGVRHPRDVALALAAGATNVMIGSWFAGTYESPGDLQWDETGRPYKESYGMASKRA
                     VAARTTSDGTFDRARRSLFEEGISRARMYLDPHRSGVEDLIDYICAGVRSACTYAGAR
                     TLPELSERAVLGVQSAAGFAEGRPLPGGW"
     gene            2569..3477
                     /locus_tag="VF788_08550"
     CDS             2569..3477
                     /locus_tag="VF788_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX8934226.1"
                     /translation="MSPRGLFVGLTTLDLVQRVGQRPGVNEKVIAQRSDLAVGGPAAV
                     AAVTFSALGGRSVLLSALGPGPLGGLGGKELDQAGVCVVDAWAGGADLSISAVTVLND
                     TGDRSVVSRNAEDLIIAVPAGLLSLTRDADVVLIDGHHPDLAVAAARAALSAEIPVVL
                     DCGSAKPVYAELVPVADAAVCSTGFVGGDPEEFDEVGRAMVAEGARLVAMTAGAAPVR
                     WRTREATGTVEVPPVTVRDTLGAGDVLHGAVAFARAWGASDPVHLLSMGVAVASLRVQ
                     HVGPRAWLDDQRLRALRVDRADGSVS"
     gene            complement(3474..>5355)
                     /locus_tag="VF788_08555"
     CDS             complement(3474..>5355)
                     /locus_tag="VF788_08555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase family 65 protein"
                     /protein_id="HEX8934227.1"
                     /translation="PVLLVLQSELFANEQLPPIVDDPRVAAALSEPLVAEQSRCNDTG
                     ATLLHSTRHSGLRMAAAMDHEVTGPSRTEFHSSATEHVARTTVICRLEPGQRLRVVKY
                     LAYGWSSQRSLPALNDQVRAALAAARYTGWNGLTTEQRRYLDDFWAAADVEVEGNAQL
                     QQAVRFASFHVLQAGARAEKRGIAAKGLTGPGYDGHTFWDTETFVLPMLSHTMPDAAA
                     DVLRWRQQILPLALERAAQLGLAGAAFPWRTIRGQECSGYWPAGTAAFHINADIADAA
                     IRHVTATGDIDFERDVALELLVQTARLWRSLGHHDLEGRFRIDGVTGPDEYSAIADNN
                     VYTNLMAQRNLRAAADAVARHSEQATALGVDSEEAASWRDAAAEMVVPYDEKLGVHPQ
                     AEGFTEHAVWDFAGTTPDQYPLLLHFPYFDLYRKQVVKQADLVLAMQLCPEAFTAEQK
                     ARNFAYYERITVRDSSLSAATQAVLAAETGHLDLAYDYLYETALVDLANLANNTSHGL
                     HIAALAGAWSVLVAGFGGMRHLNDGGLAFAPRLPETLTKITFRLRWRGRRLRVQIVPG
                     QAEYRLLEGTELELSHYGRLMTVTADSPLVQPIPPIAARDQPTQPVGREPLARRLREA
                     GN"
BASE COUNT          847 a         1746 c         1838 g          924 t
ORIGIN      
        1 tccaactcgg ctatcggtgt ggtgacgcgc tcggtcatcc gcagcatgtc ggcgaacttg
       61 accgaaccga gcgcgaaatt ctcggtggct tggggattgc cgctggaaag ccagtccgcg
      121 aggtcctgca tcgcccgggc agccggttcg accgctcggc tcaggtcggc ctgcagcgct
      181 ggatctttca cctcggcgaa gatcttcggt acatccttgc ggtagaaatc cgggaatcct
      241 ccgaagccgt caacgccgta cttgatgaag ctcttcggta gcggcgtgcg caggttcgcc
      301 cggatctgtg cagcggccgt gggcacggcg cgcgcgtagc cgatgaatgc tttgagtcga
      361 gcttcggcgg gggcgtaggg acgggtcaga tacacgctcg gatcgagggc gccgagatag
      421 aattccgggt tcgtgaacgg ctgctctgcc tcttccagcc aaaataggtc cgtgtcgacg
      481 cgcgagagca ggtattgacg ctcgaagcgc tgggcggcgc tgagcgtgtt ctggtcgaac
      541 ttctcagcct gcgtgcgttg cgcatgcaac cactgtgcct cggcccggat gccggccgcg
      601 gtccagtccg gcaagcgacc atcgtattca tgccggccct gctggacggc gaacggcggg
      661 ttcaaggcga agtagtgatt ctcaaactca cggacgtgct tggtccattc agcgttgtca
      721 gttgcttgtg ccgcaccggt cggcggcgct gaagaggtgc cgcagccaac ggccaggacg
      781 gcacacagca cggcgaaagc atgaacaagg cgccgcgcag ggaacggatg ggccatggaa
      841 tttcctcagc aacgttggga ctcgagtcaa cgtagtgggt cggcctgaga cctcgccgtc
      901 cggtcggtga aaagatcgtg ccggttctga tcgtgaacgg gtcctcacca gccgccgggg
      961 agtgggcgtc cctcggcgaa tccggccgcc gactgcaccc cgagcacggc ccgctcggat
     1021 agctccggca acgttcgggc gccggcgtag gtgcaggcgc tgcggacccc ggcgcagatg
     1081 tagtcgatga ggtcctccac tccggaccgg tgcgggtcta gatacatccg ggctctggag
     1141 atgccctcct cgaacaggga cctgcgggcc cggtcgaagg tgccgtcact ggtggttcgg
     1201 gcggcaacgg cccgcttgga ggccatcccg taggactctt tatagggtcg gccggtctcg
     1261 tcccactgta ggtcacctgg tgattcgtag gtgcccgcga accatgagcc gatcatgacg
     1321 ttcgtagctc ccgcggcgag cgcgagcgcg acgtcgcgcg gatggcgcac gccaccgtcg
     1381 gcccagatga agctaccggc ttcgcgggcc gcggcggcgc attcggccac cgcggagaat
     1441 tgcggccggc cggctccggt catcatccgg gtggtgcaca tcgcgcctgg tcccacgccc
     1501 accttgacga tgtcggcacc ggcttcgagc aggtcgcggg tgccctgcgc ggtcaccacg
     1561 ttcccggcta ctaccggcac atccggccca cgtgaccgga ccgcgcgcag cgcgtcgagc
     1621 atcttgcgct gatggccgtg cgcggtgtcg acgaccagta cgtcgactcc cgctgcgagc
     1681 agagcgtcag tcttcgcggt gacgtcaccg ttcacaccga tcgccgcggc cacccggagc
     1741 cggccggccg tgtccaatgc gggggagtag agctccgccc gcaacgctcc ggtgcgagtc
     1801 agcactccca cgagccgatc ttgggcatcc actgcgagtg ccagctcctg gcgacggtgg
     1861 tgcagctgat cgaagatctt gcgcggttcg gtatcggctg ataccacgac caggtcggtt
     1921 tgcgctacgt cggccaaccg ggtgaaccga tcgacctcgg tcagctcggt ctcggtgacc
     1981 aggccgaccg gatggccgag gccatcgagc accacgacag ccccatgggc ccgcttcggc
     2041 aacaggttga tggcgtcggc gacggcgtcc tgcgggttca ggatgagagc ggtgtccacc
     2101 accaggtggc gtgccttcac ccacgacacg gtctcggcaa ccactgccgg atccacgtcc
     2161 tggggcagca ctaccaaccc accgcggcgc gccaccgtct cggccatccg ccgccccgcc
     2221 accgcggtca tgttggcgac cacgagggga atggtggttc ccgaaccgtc cactgtggac
     2281 aaattcgcat cgaaccggga ttccacatcc gagcacgacg gcaccaagaa cacctcgtcg
     2341 taagtcagct cgtaacctgc cccgcgcccg tccacaaaac gcacatcacc aacggtaccc
     2401 agcagaatcc gtattcagcg ggctcaacgg gactatcaac gctgtcttta acccgttgtg
     2461 cccgttgaat gcggtgagcg gtggccggac tagcgtcgga ttgatgtcat gtgtgcaagg
     2521 tgggcatggc ccggtgtgtt tgatcgtggt gtgggcaagg agctgctgat gtcgccccgc
     2581 ggtttgttcg tcggcctcac cactctggac ctggttcagc gggtgggtca gcgacccggg
     2641 gtcaacgaga aggtcattgc ccagcgcagc gacctggccg tagggggacc agccgctgta
     2701 gccgccgtaa cgttcagcgc gctcggcggc cgtagcgtgc tgctctccgc gcttggtccc
     2761 ggtccgctag gcgggttggg aggcaaagaa ctggaccagg ccggggtgtg cgtcgtcgat
     2821 gcctgggcgg gcggtgcgga tctgagcatc tcggcggtca ccgtgctcaa cgacaccggt
     2881 gacaggtcgg tggtatcacg caatgccgag gacctgatca ttgcggtgcc cgctggtttg
     2941 ctctcgctga cccgcgacgc tgacgtggtg ctgatcgacg ggcaccaccc tgacctggct
     3001 gtggccgccg cccgagccgc cctgtcggcg gagatccccg tggtgctcga ctgtggcagc
     3061 gccaagccgg tatacgccga gctggtcccg gtcgctgacg ccgcggtgtg ctcgaccggg
     3121 ttcgtaggtg gcgacccgga ggaatttgat gaggtcggca gggcaatggt ggcagagggt
     3181 gcccggctgg tggcgatgac ggctggtgcc gctccggtgc gctggcgtac ccgggaggcg
     3241 actggcacgg tcgaggtgcc accggtaacc gtccgcgaca ccctgggcgc cggcgacgtg
     3301 ctgcatgggg cggtcgcgtt cgctcgcgca tggggcgcgt ctgatccggt gcacctattg
     3361 agcatgggtg tcgcggtggc gtcactgaga gtgcagcacg tcggcccccg ggcttggctg
     3421 gacgatcagc ggctccgcgc tctgcgggtg gatcgggcgg atggttcagt gagctaattg
     3481 cctgcctcgc gtagccggcg agcaagaggc tcacgcccta ccggctgcgt gggctgatcg
     3541 cgcgccgcga tgggtgggat cggctgaacc agcggcgaat ccgcagtgac cgtcatgagc
     3601 cgcccgtagt ggctcagctc tagctcagtt ccctccagca gccggtactc cgcttgcccg
     3661 ggaacgatct gcacccgcaa ccgccgcccg cgccagcgca accgaaaggt gatcttggtc
     3721 aacgtctcgg gcagacgggg cgcgaaagcc aggccgccgt cgttcagatg gcgcatcccg
     3781 ccgaacccgg ccaccagcac cgaccaggcc ccggccagcg ccgcgatgtg caggccgtgg
     3841 ctggtgttgt tcgctagatt ggccagatcc accagcgcgg tctcgtacag gtagtcgtac
     3901 gccaggtcga gatgaccggt ctcggctgcc agtacggcct gagtggctgc cgacagcgac
     3961 gagtcgcgga cggtgatccg ctcgtagtag gcgaagttgc gtgccttctg ctcggcggtg
     4021 aacgcctccg ggcacaactg catcgccagc accagatcgg cttgcttcac cacctgtttg
     4081 cggtacagat cgaagtaggg gaagtgcaac agcagcgggt actgatccgg tgttgtgccg
     4141 gcgaagtccc agaccgcgtg ctcggtgaaa ccctccgcct gcgggtgtac cccgagcttc
     4201 tcgtcgtagg gcacaaccat ctcggctgcc gcgtcgcgcc aggatgcggc ttcctcggag
     4261 tcgacgccta aggcggttgc ctgctctgag tgtcgcgcga ccgcgtccgc cgcggcgcgt
     4321 aggtttcgct gcgccatcag gttggtgtac acgttgttgt cggcaatcgc gctgtactcg
     4381 tccggcccgg ttacaccgtc gatgcggaag cggccctcca agtcgtggtg ccccagcgag
     4441 cgccacagtc gggctgtctg caccagcagc tcgagcgcga cgtcgcgctc gaagtcgatg
     4501 tcgccggtgg cggtcacatg gcggatcgca gcgtcggcga tatcggcgtt gatgtggaag
     4561 gccgcggtac cagccggcca gtatcccgag cattcctggc ctcggatagt gcgccacgga
     4621 aacgccgcac cagccagccc gagctgcgcg gcacgctcaa gggcgagcgg gaggatctgc
     4681 tgccgccagc gcagcacatc ggcggccgcg tccggcatgg tgtggctgag catcggcagc
     4741 acgaaggttt cggtgtccca aaaggtatgg ccgtcatacc ccgggccggt gaggcccttg
     4801 gccgcgattc cccgcttctc agctcgcgcc cctgcctgca aaacgtgaaa agacgcgaac
     4861 cggaccgcct gctgtagctg cgcgttaccc tcgacctcca cgtcggctgc ggcccagaag
     4921 tcgtcgaggt aacggcgctg ttcggtggtg agcccgttcc agcccgtgta gcgcgccgct
     4981 gccagcgccg cgcggacctg atcgttgagc gccggcaacg atcgttgcga ggaccagccg
     5041 taggccaggt acttcacgac tctcagccgc tggccgggct ccagccggca gatgaccgtc
     5101 gtccgcgcga cgtgctcggt cgccgaggag tgaaactccg tgcgcgaggg cccggtcacc
     5161 tcgtggtcca tcgctgcggc catccgcaac ccggagtggc gggtgctgtg cagcagcgtg
     5221 gccccggtgt cgttgcaccg tgactgctcg gcgaccaggg gctcggacag cgccgcagcc
     5281 acccgcgggt catccacgat agggggcagt tgctcgttgg cgaacagctc ggattgcagc
     5341 acgagcagca ctgga
//
LOCUS       DASVXZ010000411         2698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_671378, whole genome shotgun sequence.
ACCESSION   DASVXZ010000411 DASVXZ010000000
VERSION     DASVXZ010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671378"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..435)
                     /locus_tag="VF788_08560"
     CDS             complement(<1..435)
                     /locus_tag="VF788_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934228.1"
                     /translation="MSREVHVRFCEGPGVQFPRPTLHLVGFTGPKAEAEEIKARLAAF
                     VRETLGLELNQAKTLITHARTQRARFLGYDLTVQHSSTKSPGTGDRSTGKSRCGCRRT
                     WSRPSAPATGDTANRGTGPGSRTSTTTTSSEPTEPNIAASSTT"
     gene            complement(432..749)
                     /locus_tag="VF788_08565"
     CDS             complement(432..749)
                     /locus_tag="VF788_08565"
                     /inference="COORDINATES: protein motif:HMM:NF019984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HEX8934229.1"
                     /translation="MGRESRSWPIATRRDKSLDDRARMYHSIVQGWINYYGRFSKSMV
                     YPLLRRLTRHLMRWAYRKYKRWKRRERKAMHWLAEVAKRAPSLFAHWRFGLRPDGWAM
                     GAG"
     gene            complement(849..1355)
                     /locus_tag="VF788_08570"
                     /pseudo
     CDS             complement(849..1355)
                     /locus_tag="VF788_08570"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
     gene            complement(1715..2065)
                     /locus_tag="VF788_08575"
     CDS             complement(1715..2065)
                     /locus_tag="VF788_08575"
                     /inference="COORDINATES: protein motif:HMM:NF019984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HEX8934230.1"
                     /translation="MKHARDRIRELTRRSRLVLPVGVIVEEVNRVLRGWAAYFRYGNS
                     AVRFEKIMHHVWTRMALVIAKRHQRSRGYGWSVLAYQSPDHLGLISLSGTVVAPRPFK
                     DWREKPNAGGERRR"
     gene            complement(2207..2670)
                     /locus_tag="VF788_08580"
                     /pseudo
     CDS             complement(2207..2670)
                     /locus_tag="VF788_08580"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
BASE COUNT          484 a          958 c          782 g          474 t
ORIGIN      
        1 agtagttgac gacgccgcga tattcggctc cgtaggttct gacgatgtcg tagtcgtcga
       61 ggttctggag ccgggaccgg taccacggtt tgccgtgtct ccggtagcgg gcgcactggg
      121 ccttgaccac gttcgacggc acccgcagcg cgattttccc gttgaccgat ctccggttcc
      181 tggtgatttc gtgctggagt gctggacggt gaggtcatag ccgaggaacc gcgcccgctg
      241 ggtgcgggca tgcgtgatga gggtcttggc ctggttgagt tccagtccga gggtctcccg
      301 gacgaacgcg gccagcctgg ccttgatctc ctcggcttcg gccttcggcc cggtgaatcc
      361 caccaagtgg agagtaggcc gggggaattg cacccccggc ccctcgcaga accggacgtg
      421 aacctctcga ctcatccggc tcccattgcc cagccgtcag gacgcagacc gaatcgccag
      481 tgggcgaaca ggctgggtgc acgcttggcg acctccgcca gccagtgcat ggccttacgc
      541 tcccgacgtt tccaccgttt gtatttccgg taggcccagc gcatcaagtg cctggtgagc
      601 cggcgcagga ggggatacac catggacttg gagaagcgcc cgtagtagtt gatccaaccc
      661 tgcacgatgc tgtggtacat ccgcgcacgg tcgtcgagtg acttgtccct gcgcgtcgcg
      721 atgggccagg agcgactctc ccggcccatc gcgacgaccg cgtcccggct gaccgccggc
      781 cggaagctca cgaagtgcgt cccgtatttg ttcgtggcca gccggggacg aaccgtgtac
      841 tccaggaatg tgaacgacgt gtgctcgtag gagccacgcc ggtcggcgtc ctggccggag
      901 acgaggcggg tcttgtctgg atgcaactcc agaccaccct gcgtcagccg tgccgcgatg
      961 gccccccgca cctggtgggc ttgccgctcc ctggtgccgt gcaccaccgc gtcatcgccg
     1021 tagcgttcgc acgtcaggtt cgggtattct cgaaccatcc acctagcgaa cacgtactgc
     1081 atgaacaagt tcgctaacca aggtgagatc gccgacccct gtggggtacc gcggtcccga
     1141 gcgaccagtg tgccctcccg ctgttgcctc ggcgctggcc gccaccgagt accctccagc
     1201 agactccacc tctgatcggt gtgctgtgcc accgccttaa gcacaagatc ctgcggcacc
     1261 gggtcgaaga acttctggat gtccaggtca acgacccagt ccgttctcca ccaacgctcc
     1321 cgacacgccc ccaccgcgtc ccacgctgac cgccccggac gataccccta cgagtccggg
     1381 tgacacaccg gttcccccgt gggctccaga tacctcctgc cccaccgtct gcgcgacccg
     1441 atccgcgcta gtaggcaccc cgaggactcg cactccccag ccaccagact tggggatctc
     1501 gacggccgtg accggtggcg ggacataacg tcccgacgac atgcgatgga gggtcgggaa
     1561 ctggcgcggt tgccttgatc gacagtaggt cacagagccg ctaagaccgc acggtttccc
     1621 gtgaggtcgt tcttctctgt caccatgatc agatattcgc tccgtttcca gctcccgccc
     1681 gtcaaaccac tcgtgcggtt ctcccgcaca cggcttaccg acgccgttca ccgccggcat
     1741 tcggtttctc ccgccagtcc ttaaagggcc tgggagcgac cacggttccc gacagggaga
     1801 tcagcccaag gtggtccggg gactggtaag ccagcacaga ccacccatac ccgcgggacc
     1861 gctgatggcg cttggcaatc accagcgcca tccgggtcca cacgtggtgc atgatcttct
     1921 cgaagcgcac cgcggagttg ccgtaccgaa aatacgcggc ccagccacgc aggacacggt
     1981 tcacctcctc cacgatcacc ccgaccggaa gcaccaaccg tgaccggcgg gtcagttccc
     2041 tgatccggtc ccgggcatgc ttcatcgccc tgtccgagga ccaacgagcc aggaacgtca
     2101 ccgaccacct ggggttgcgg cgtccggcga cccggaccag ccggtgatga aaaccgagaa
     2161 aatcaaaccc ggcaccacca acctgcagct gcacaatccg cgtcttggct tcctttggtt
     2221 ccagaccaag ctcagccagc agcatcctta accgcgccaa ggcggcctcg gcctgctcat
     2281 cggatcggca catcaccagc acgtcatcag cgaaacgcac cagcaccccg tgctcccgca
     2341 cgtcccacgc ccggtcgatc cggtgcaagt acacgttaca gagcaacgga ctgatcaccc
     2401 gccttgtggc gtgcccgtca cgtcgtgccg cacctgtccg tccaccctca ccccggcgcg
     2461 cagcatcacg cgcagcagtg tgaggaccga ctggtcacag atacgttcct cgatcgcttg
     2521 catcaacttc tcgcgcggta tcgccgagac gcagttggcg atatccgtct cgaccaccca
     2581 ccggcgaccc cgccaggact catcaatcag tacctgcagg gcatcgtgcg ggctgcgttt
     2641 tggccgaaac ccgaacgaac acggcagcat gtccgcctca aacaccggct ccagcaca
//
LOCUS       DASVXZ010000412         9047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_671381, whole genome shotgun sequence.
ACCESSION   DASVXZ010000412 DASVXZ010000000
VERSION     DASVXZ010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9047
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671381"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1082
                     /locus_tag="VF788_08585"
     CDS             <1..1082
                     /locus_tag="VF788_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEX8934231.1"
                     /translation="AGLPVLVVGDIDRGGVLAHLFGTLALLSAADQALVAGFVINKFR
                     GDPDLLAPGLAQLQALTGRRSYGVLPFTDELWLDAEDSLAYATDGVVGRPAPPWGDQW
                     LRVAAVRLPRISNGTDVDALACEPGVVVRYVTEPSRLADADLVVLPGSKSTVADLSWL
                     RHTGLAAAVAEHAGAGRPVLGICGGYQMLGRRVIDNVESGAGEVAGLGLLDLEVVFDA
                     VKHLGRPSGTAFGVPVTGYEIHHGRVMHRGDPALVWGADEGSDGGHVWGTHWHGLLEN
                     DAFRRALLRRVACLAGRPVFQPAPDTNFAQLRSAQLNLLGDLVSTHLDTDALVNLINH
                     GPPATLPFVPPGAIGGHRVGQTRLD"
     gene            1096..1362
                     /locus_tag="VF788_08590"
     CDS             1096..1362
                     /locus_tag="VF788_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020415736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEX8934232.1"
                     /translation="MDRQVNVYEAKTQLSKLLEQVEAGEEIVIARNGKPVARLVPFQR
                     APVRRLPGAWKGKVWMSPDFDEPDPELEELFYNGPIFPREGDRL"
     gene            1359..1733
                     /locus_tag="VF788_08595"
     CDS             1359..1733
                     /locus_tag="VF788_08595"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HEX8934233.1"
                     /translation="MRLLLDTNVVIWWLEESPRLSGRTCDAIAEESEVVVSAVSAFEI
                     AVKMGVGKIRAPGDLAVQIAEQSMIELPVTVRHGLAVGQLPLHHRDPFDRLLIAQARC
                     EGLTIVTADCAFAAYDVPIMPA"
     gene            complement(1835..2092)
                     /locus_tag="VF788_08600"
     CDS             complement(1835..2092)
                     /locus_tag="VF788_08600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934234.1"
                     /translation="MTRKVDRGRRRNHWILLDRSWAQRLGVRRTAGMYRIRSRDLARR
                     LSQETLWMDESGRIHAYGWQPAAAHADRDNTWSKSVSAWGR"
     gene            2552..3034
                     /locus_tag="VF788_08605"
     CDS             2552..3034
                     /locus_tag="VF788_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934235.1"
                     /translation="MVSISRRTLAALLLSVVVVTAGAVPAQSAVPDIPVLTGIRTGAH
                     PAFDRIVLDVSGPRPQVSSRFVDELTQDGSGNVEWLTGAAFAEVRATPVQAHDEAGHP
                     SFAGPRKFRTSNPTNVMAVSIIGDFEGVVSVGVGMRKQTWVKSFTLTAPTRVVIDVGQ
                     "
     gene            3054..6752
                     /gene="cobN"
                     /locus_tag="VF788_08610"
     CDS             3054..6752
                     /gene="cobN"
                     /locus_tag="VF788_08610"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019819151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051116 - cobaltochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HEX8934236.1"
                     /translation="MRILLLSTADTDLLAARACGADYRLANPARTEPTELPTLLEGVD
                     VVVLRLLGGRRAWEPGLDTLLRAGLPAVCLGGEATPDAELMASSTVPTGVAAEALRYL
                     VAGGPRNLGQLARFLSDTLLLTGEGFEPPAATPEYGVHDARDPDPARPTVGIVFYRAH
                     ALAANTGFVDVLAGAVRAAGANALPVFCGSLRGLGSAQADGLRALLDRCDAVVTTVLA
                     AGGSAGAEESWDAGALAALDVPVLQGLCLTSSRASWQLSDAALSPMDAAMQVAIPEFD
                     GRLVSVPFSFKEPGPHGIPIYVADPERAARVAGTAVALARLRRVPAAAKRLGIVLSAY
                     PTKHARIGNAVGLDTPASAVVLLRALAEAGYDLGELDVDALEGDALIHRLIAAGGHDV
                     EWLTEEQMGSAAIQVPTGRYAQWFAELPAPLRESMVQAWGEPPGQLYVADGAIYVGSL
                     RFGNVVLLIQPPRGFGERPVAIYHDPELAPSHQYLAAYRWLEHSFGAHAVIHLGKHGN
                     LEWLPGKGLGLAAQDAPDAVLGNLPLVYPFIVNDPGEGTQAKRRAHATIVDHLIPPMA
                     RADTYGDLARLEQLLDEYATVTALDPDKLPTLRGQIWTLIQSAQLHHDLGRSDAAVPG
                     ADDFDEFVLHLDGYLCEIKDVQIRDGLHVLGRVPTGDELINDVLAVLRARQVFGSGEP
                     LPGLRAAIAEWIGLDEQVLLAEPGAFVKATPTLFCAAGISDRSAVASIRASDVVDRVE
                     AAAAKLLRFLAEPGLDRIPWSPGLAHDAVVECLGDVFGDAVRDSARVEAVLRFGCAEL
                     VPRLAGTTAEITNVLRALEGRFVEPGPSGSPTRGLISVLPTGRNFYSVDPKSIPTRNA
                     FDVGIALADSLLDRHRADTGAWPDSVGLTVWGTSAMRTQGDDIGEVLALLGVRPTWDD
                     ASRRVTGIEVVPLPELGRPRIDVVLRISGFFRDAFPHVIALLDDAIAAIAILDEPAER
                     NYVAAHYRTDLAAHGDDRRARTRIFGSKPGAYGAGLLPLIDSREWRTDADLAEVYATW
                     GGYAYGRGLDGAAARSDMEHAFRRITVAAKNVDTREHDIADSDDYFQYHGGMVAMVRS
                     LTGRNPAAYVGDSAVPHAVKTRSLAEETRRVFRSRVVNPRWIAAMQRHGYKGAFELAA
                     TVDYLFGFDATAGVVEDWMYHQLAESYVLDPGVQQFLRESNPWALRGMTERLLEAADR
                     GLWADPAQADIDALRAVYLDLEGDLEES"
     gene            complement(6754..7530)
                     /locus_tag="VF788_08615"
     CDS             complement(6754..7530)
                     /locus_tag="VF788_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005154602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEX8934237.1"
                     /translation="MPAPVSETLARAPAQHPAGSAVPRSVSPWVVGATPLPRRKDGFG
                     VVRSTPAALLNRRLTTVDRLPPPTSTSFQSTIGPVTPQVLGRSTWKPICPVKAEQLRY
                     LTMSFRGFDARAHTGEMLVNADVAQTVVSVFKRLFAAGFPIEEMRITPEAELNLPPTG
                     DHNNTEAFVCRPTRGQLQWPARAYGLTISLNPFDNPYVKGDLVLPELASSYLDRDWVR
                     SGMVLDGDPAVKAFESVGWKWGGRWPTPVDFAYFTATGRP"
     gene            7697..8149
                     /locus_tag="VF788_08620"
     CDS             7697..8149
                     /locus_tag="VF788_08620"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8934238.1"
                     /translation="MLHRSLAADLSTAMIYALLRLRVEVFVVEQNCPYQELDGHDLDR
                     TTRHYWLAPADALENPQATLRLLEPTEGQFRIGRICAAPPARRQGGVRRLLEAALGEV
                     GDAPCVVDAQLDCVELFGAFGFVIDGPESTKGGVPYVPMRRDASARIR"
     gene            8152..>9047
                     /locus_tag="VF788_08625"
     CDS             8152..>9047
                     /locus_tag="VF788_08625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8934239.1"
                     /translation="MSIARYPFAAIVGHHELRLALLLTAVHPGIGGVLVRGEKGTAKS
                     TVVRALAALLPAVSAVPGCRFGCDPMDADSTCPDGPHAAAAGANIRLARLVELPVGAT
                     EDRLVGSLDLQRALTEGVSAYQPGLLAAAHRGVLYVDEVNLLADHLVDVLLDAAAMGR
                     AHVERDGVSVSHAASFLLVGTMNPEEGELRPQLLDRFGLTVEVAASRDVETRAEVIRR
                     RLRYEADPAGFAADWRAQDVALADRIMTARSLLPQVVLPDGELRRIATVCAAFEVDGM
                     RADLVLARTALAHAAWRGADAVT"
BASE COUNT         1391 a         2946 c         3092 g         1618 t
ORIGIN      
        1 ccgctgggct gccggtgttg gtggtcgggg acatcgaccg cggtggcgtg ctcgctcatc
       61 tgttcggcac gctggccttg ctctctgcag cggaccaggc gttggtggcc ggattcgtaa
      121 tcaacaagtt ccgcggtgat cctgacctgc tcgctcccgg tctggcgcag ttgcaggcgt
      181 tgaccggccg gcgcagctac ggggtgctgc cgtttaccga cgagttgtgg ctcgacgccg
      241 aggactcgct ggcgtatgcc accgacggcg tggtcggccg acctgctccg ccatggggtg
      301 accagtggtt gcgagtggcc gcagttcggt taccgcggat ctccaatggc accgacgtcg
      361 atgcgctggc ctgcgagccc ggcgtggtgg tgcggtacgt caccgagccc tcccggttgg
      421 cggatgccga tctggtggtg ctgcccggct caaagtccac cgtcgcagat ctgtcctggc
      481 tgcgccatac cgggctggcc gctgcggtag cggaacacgc tggtgccgga cgaccggtgc
      541 tgggcatctg cggcggctac cagatgctcg gtcgtcgtgt catcgacaac gtggagtccg
      601 gagccggaga agtggctggt ctggggttgc tcgacctgga ggtggtcttc gacgccgtca
      661 aacacctggg gcgtccgtcc gggacggcgt tcggtgttcc ggtcaccggc tacgagatcc
      721 accacggccg ggtgatgcac cggggcgatc ctgccttggt gtggggtgct gacgagggct
      781 ccgatggcgg ccatgtatgg gggactcact ggcacggcct gttggaaaac gatgccttcc
      841 gccgcgcttt gctgcgtcga gttgcctgcc tcgccggtcg gcccgtcttc caaccggcgc
      901 ccgacaccaa cttcgcccag ttgcggagcg cccagctgaa tctgctcggc gatctggtct
      961 cgacgcatct ggacaccgat gcgctggtca atttgatcaa tcatggccct ccggccacgc
     1021 tgccctttgt gccaccaggc gccatcggcg gtcaccgtgt tggtcagacc aggcttgact
     1081 aaatatgctg gaacaatgga taggcaggtg aacgtctacg aggccaagac ccagctttcc
     1141 aaactgctcg agcaggtaga ggccggggag gagatcgtca tcgcccgcaa cggcaagcca
     1201 gtcgctcggt tggtgccgtt tcaacgtgct cccgtgcggc ggctgcccgg agcatggaag
     1261 ggcaaggtgt ggatgtctcc agacttcgat gagcctgacc cggagttgga ggagttgttc
     1321 tacaacgggc cgatctttcc ccgcgagggc gatcgattgt gaggctcctg ctcgatacca
     1381 atgtcgtgat ctggtggctc gaggagtcac cccgactgag tgggaggacc tgcgatgcga
     1441 tcgcggagga gtctgaggtc gtagtctcag cggtcagcgc gttcgagatc gcagtcaaga
     1501 tgggggtcgg caagattcgc gcgccaggtg acctcgctgt gcagatcgcg gaacagtcga
     1561 tgattgagct accggtaacg gtgcggcacg gactagcagt cggacaactg cccttgcacc
     1621 accgggaccc ttttgaccgg ctgctcattg cgcaggcgcg gtgtgagggg ctcacgatcg
     1681 tcaccgctga ttgtgccttc gccgcctatg acgtgccgat catgccggcc tgactggcgc
     1741 acaatcgttg tctggagatg ttcaccagcc agcggatgtt gaggtcctag tccctcaggt
     1801 cagcacccgg ccggtaacaa ttgcgaagca gaggctacct gccccacgcg gagacgctct
     1861 tgctccacgt gttgtcacgg tcggcgtgcg ccgccgcagg ctgccacccg tacgcgtgga
     1921 tccttccgga ttcgtccatc cacagcgttt cctgggaaag tcgccgagcc agatcgcggc
     1981 tgcggatccg gtacataccc gctgtcctgc gcactcctaa ccgttgcgcc cacgaccggt
     2041 ctagtaaaat ccagtggttg cggcggcgac cgcggtcgac cttgcgtgtc atcagttctc
     2101 ctttgtccag ggctttcggc tatcatcaag atctgcccac tggtgactgc gccttacggc
     2161 aatcacactc gacgagtcgc taggtattcg cgacccgttg aaaaaggagg aattgttgta
     2221 taaatcaatg tgacctagcc tccatggcac gcgcagatga ggtaatgcag gagctgtgga
     2281 gtgcaggtga tcagtcgccg tccgtccgtt caggtattgg cctgccctcg ggccacttaa
     2341 tgtcctactt ccagtcgact gacctgaccc gaacatagcc agcgcaatcc gcgccccgca
     2401 aggacatttg gcggtaacga ccgtcacatg tatcgtgtcg taattcttaa ccccccagag
     2461 gttccctgaa gtgttatcta atcgtgaggc tcagtcgaag ctgaccgtct gctcatctct
     2521 ggggagcgcg gaccctccag ccgaggtcac catggtctcg atttccaggc ggaccctcgc
     2581 cgcccttcta ctcagtgttg tggtggtcac tgcgggcgcc gtcccggcgc agtctgcggt
     2641 gccagatatt cccgtgctca ccggtatccg gaccggggcg cacccggcat ttgaccggat
     2701 cgtgctggac gtgtccggcc cacgaccgca ggtcagctca cgattcgtcg acgagctgac
     2761 ccaggacggt tccggaaacg tcgagtggct caccggcgcg gccttcgccg aggtgcgcgc
     2821 gacaccggtg caggctcatg acgaggctgg tcatcccagc tttgctggac cgcgcaagtt
     2881 ccgcaccagc aacccgacca acgtcatggc ggtctccatc atcggagact tcgagggcgt
     2941 ggtatccgtg ggcgtcggga tgcgcaagca gacctgggtc aagtccttca ccctgaccgc
     3001 gccgacccgc gtggtgatcg acgtcggcca gtgagtccgt aagctcgcca ggtgtgcgga
     3061 tcttgctgtt gtccaccgct gacaccgact tgctcgccgc gcgggcctgc ggcgccgatt
     3121 accggctcgc caacccggcc cggaccgagc ccaccgagct gcccacgctg ctcgaaggcg
     3181 tcgacgtggt ggtgctgcgg ttgctcggtg ggcgacgagc ctgggaaccc ggactcgaca
     3241 cgctgttgcg tgccgggctg ccagcggtgt gcctgggcgg tgaggcgacc ccggacgccg
     3301 agctgatggc gagttccacg gttcctacgg gggtggcggc cgaggcgctg cgctacctgg
     3361 tcgctggcgg acccaggaac ctgggacagc tcgcccggtt cctatccgac acgctgctac
     3421 tcaccggaga gggcttcgag ccgccggccg ccacgccgga atacggcgtg cacgacgcgc
     3481 gcgacccgga tccggcgcgc ccgactgtgg gaattgtctt ctaccgggcg cacgcgttgg
     3541 cggcgaatac cggtttcgtc gatgtgctgg ccggcgctgt ccgcgcggcc ggggcgaacg
     3601 cgctgccggt gttctgcggt tcgctgcgtg ggctgggcag cgcgcaggcc gacgggctgc
     3661 gcgcgttgct ggatcgctgc gatgcggtgg tgaccacggt gctcgccgcg ggtggcagtg
     3721 ccggtgccga ggagtcctgg gacgcgggag cgctggccgc gttggacgtc ccagtcctgc
     3781 aaggactgtg cctgacctca tcacgggcga gctggcagct cagcgatgcg gcgctgtccc
     3841 cgatggatgc cgccatgcag gtcgcgatcc cggagttcga cgggcggctg gtgtcggtgc
     3901 cgttctcgtt caaggaaccg gggccccacg ggatcccgat atacgtcgcc gaccccgagc
     3961 gggccgcccg ggtagctggc accgccgtcg cactggctcg gttacggcgg gttccggcag
     4021 cggccaagcg gctcgggatc gtgctgtccg cctacccgac caagcatgcc cggatcggca
     4081 atgcggtcgg gctggacacc ccagcatcgg ccgtggtgct gctgcgggca ctggccgagg
     4141 cgggctatga cctcggcgag ctggacgtcg atgctctgga gggtgatgcg ctgatccacc
     4201 gcctgatcgc cgccggtggg cacgacgtcg agtggctcac cgaagagcag atgggcagcg
     4261 cggctattca ggtgcccacc gggcgatacg cccagtggtt cgccgagctg ccagctccgc
     4321 tccgagagtc gatggtgcag gcctggggcg agccccccgg gcagctctac gtcgcagacg
     4381 gcgcgatcta cgtcggctcg ctgcggttcg gcaatgtggt gttactcatc caaccgccgc
     4441 ggggattcgg cgagcgcccg gtggcgatct accacgatcc cgagctggcg ccttcccacc
     4501 agtacctagc cgcttaccgc tggctggagc actcgttcgg cgcgcacgcc gtgatccatc
     4561 tgggcaaaca cggcaacctg gaatggctgc ccggcaaggg gctgggactg gccgcgcagg
     4621 acgccccgga tgcggtgctc ggcaacctgc cgctggtata cccgttcatc gtcaatgacc
     4681 ccggtgaggg gacccaggcc aagcgcaggg cacacgccac catcgtcgat cacctgatcc
     4741 cgccgatggc ccgagccgat acctacggtg atctcgcccg tctcgagcag ctgctcgacg
     4801 agtacgcgac ggtgaccgcg ctggacccgg acaagctgcc cacactgcgc gggcagatct
     4861 ggacgctgat ccagagcgcg cagcttcacc atgatctcgg ccgctccgac gctgccgtgc
     4921 cgggagccga cgacttcgac gagttcgtgc tgcacctcga cgggtacctg tgcgagatca
     4981 aggacgtaca gatccgcgac gggctgcacg tgctgggccg ggtccccacc ggggatgagc
     5041 tgatcaacga tgtgctcgcg gtgctgcgcg ctcgccaggt gttcgggtcg ggggagccgc
     5101 ttccggggct acgcgccgcg atcgccgagt ggatcgggct cgatgagcag gtgctgctgg
     5161 ccgagcccgg tgcgttcgtc aaggccacgc ccacattgtt ctgtgcggcc ggcatctccg
     5221 atcggtccgc ggtggcctcg atccgggcca gcgacgtcgt cgatcgggtg gaggcagccg
     5281 cggccaagct gctgcgtttc ctcgcggagc ccggtctgga ccgcatcccc tggtcgccgg
     5341 ggctcgccca cgacgccgtg gtcgagtgcc tcggtgacgt gttcggcgac gcagtccgcg
     5401 acagtgcacg cgtggaggcc gtgcttcggt tcggctgcgc cgagctggtt ccccggctgg
     5461 ccggcaccac agccgagatc accaacgtgc tgcgcgcatt ggaggggcgg ttcgtcgagc
     5521 ccgggccatc cggttcgccc acccgcggac tgatctcggt gctgccgacc ggacgcaact
     5581 tctactccgt ggatcccaag tcgatcccca cccgcaacgc cttcgacgtt ggcatcgcac
     5641 tggccgactc gttgctcgac cgccaccgcg ccgataccgg cgcctggccc gactcggtgg
     5701 gtctcaccgt ctggggcaca tccgcgatgc ggactcaggg cgacgacatc ggtgaagtgc
     5761 tggcattact cggtgtccgt ccgacctggg acgacgcatc ccgccgtgtc accggcatcg
     5821 aggtcgtgcc gcttccggag ctcggccgcc cccgcatcga tgtggtcctg cggatctccg
     5881 gcttctttcg ggacgccttc ccgcacgtga tcgcgctgct cgacgatgcg atcgccgcaa
     5941 ttgcaatatt ggacgagccg gcggagcgca actatgtcgc tgcccattac cgcaccgacc
     6001 tcgccgcgca cggtgacgac cgccgggccc gcacgcggat cttcgggtct aagcccggtg
     6061 cctacggcgc cgggctgctg ccgctgatcg acagccggga gtggcgcacc gacgccgatc
     6121 tcgccgaggt ctacgccacc tggggcggct acgcctacgg acggggacta gacggggctg
     6181 cggcgcgctc cgatatggaa cacgcgttcc ggcgcattac ggtggcggcc aagaacgtgg
     6241 acacccgcga gcacgacatc gccgattccg acgactactt ccagtatcac ggcgggatgg
     6301 tcgccatggt gcgctccttg actggacgca atccggcggc gtatgtgggt gactccgcgg
     6361 tgccgcacgc ggtgaaaacc cgatcgctgg ccgaggagac ccgtcgggtg ttccgctccc
     6421 gggtggtcaa cccgcggtgg atcgccgcca tgcagcgaca cggctacaaa ggtgcgttcg
     6481 agctggctgc caccgtcgac tacctgttcg gcttcgacgc gaccgcaggc gtggtcgagg
     6541 actggatgta ccaccagctc gccgagtcct acgtcctcga ccccggcgta caacagtttc
     6601 tccgggaatc caacccgtgg gcgctgcgcg ggatgactga acggctgctc gaggccgctg
     6661 accggggttt gtgggccgat cccgcccagg ccgatatcga cgcgctgcgg gcggtgtacc
     6721 ttgatcttga gggggacttg gaggaatcct gaatcacggg cgcccggtag cggtgaaata
     6781 tgcgaaatcc accggagtgg gccaccggcc gccccatttc cagcccaccg attcgaatgc
     6841 tttcaccgcc gggtcaccat ccagcaccat gcccgagcgc acccagtccc gatccagata
     6901 ggacgacgcc agttccggca gcaccaggtc acctttgacg taagggttgt cgaacgggtt
     6961 gagggagatg gtcaacccgt aggcacgcgc cggccattgc aactggccac gggtggggcg
     7021 gcagacgaat gcctcggtgt tgttgtggtc accggttggc ggcaggttca gctcggcttc
     7081 cggtgtgatc cgcatctcct cgatggggaa accggccgcg aacagccgct tgaagacact
     7141 caccacggtt tgcgcaacat cggcattcac cagcatctcg ccggtatgcg cgcgggcgtc
     7201 gaagccccgg aacgacatcg tgaggtagcg aagctgttca gccttcaccg ggcagatcgg
     7261 cttccaggta ctgcgcccca gcacctgtgg ggttaccggg ccgatcgtgg actggaatga
     7321 ggtcgaggtt ggcgggggca gccgatcgac cgtggtcaac cgccggttca gtagcgcggc
     7381 gggcgtggat cgcaccacgc cgaatccgtc cttgcggcgt ggcagcggtg tggcccccac
     7441 gacccaggga gacaccgaac ggggcaccgc agaaccggcc ggatgctggg cgggggcccg
     7501 ggccagtgtc tccgagacgg gcgcgggcat ccgtggaatg gtgtgggacc gaaatatgac
     7561 ggtgacacag ctcatgagca gggcacccat aaacagacaa atcagtgcat tcttcgggat
     7621 gagctgccaa ggtcggtgcc gcgccacggc gccacgatgt cagaccatct ggtacgcatg
     7681 agcggtggac cacactgtgc tacatcggag cctcgccgcc gacctgtcca ccgcgatgat
     7741 ctacgctctg ctgcgtctgc gggtggaagt gttcgtggtc gagcaaaatt gcccttacca
     7801 ggagctcgac ggtcatgacc tggaccggac gacccggcat tactggcttg cgcctgccga
     7861 cgcactggag aacccgcagg ccaccctgcg gctgttggaa ccgaccgaag ggcagttccg
     7921 gatcggtcgg atctgcgccg ccccgccggc ccggcgccaa ggcggggtgc ggcggttgct
     7981 tgaggcagcg ctgggcgagg tgggtgacgc tccctgcgtg gttgacgcac agctcgactg
     8041 tgtcgagcta ttcggagcct tcggcttcgt aattgatgga ccggagtcca ccaaaggtgg
     8101 cgttccatac gtacccatgc gccgcgacgc ctcagctcgg atccgctgac gatgagtatt
     8161 gcccgctatc cgttcgcggc gatcgttggg caccacgagc tccggctggc gttgctactg
     8221 accgcggtgc acccgggaat cggcggcgtg ctggtccgcg gggagaaggg aaccgcgaag
     8281 tcgaccgtgg tccgggcgct tgccgcgctt ctgcccgcgg tgagcgcggt gccgggatgc
     8341 cgtttcgggt gcgacccgat ggacgccgat tccacctgcc cggatggccc gcacgccgcc
     8401 gcagcgggag ccaacatccg cctggcccgg ctggttgagc tgccagtcgg cgccaccgaa
     8461 gatcgcctgg tgggctcgct ggacctgcag cgtgcgctca ccgagggcgt ctcggcgtac
     8521 caacccggac tgctcgccgc ggcgcaccgc ggcgtgcttt atgtcgacga ggtcaacctg
     8581 ctggcggacc atcttgtcga tgtgctcctc gacgccgcgg cgatgggccg cgcacacgtg
     8641 gagcgtgacg gggtatccgt ctcgcacgcc gcatcgttcc tgctggtcgg caccatgaac
     8701 ccggaagagg gggagctacg cccgcagttg ctcgaccgct tcgggcttac cgtcgaggtg
     8761 gccgcgtccc gtgatgtcga gacgcgggca gaggtgatcc gtcggcggct gcgttacgag
     8821 gcggacccgg ctggattcgc ggcggactgg cgggcgcagg acgtggctct tgctgaccgg
     8881 atcatgacgg cgcggtcgtt gctaccacag gtggtgcttc cggatggcga gctgcgccgg
     8941 atcgctacgg tatgcgctgc attcgaggtg gacggcatgc gcgctgatct ggtgctcgct
     9001 cgcactgccc tggcgcatgc cgcttggcgg ggagccgacg cggtgac
//
LOCUS       DASVXZ010000413         1867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_134527, whole genome shotgun sequence.
ACCESSION   DASVXZ010000413 DASVXZ010000000
VERSION     DASVXZ010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134527"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..238
                     /locus_tag="VF788_08630"
     CDS             <1..238
                     /locus_tag="VF788_08630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934240.1"
                     /translation="FVTSRLFRADRPWCPASFKREHWQPAWWLQGSCSVMVDAGAHPR
                     LGHHDVALPAPAHSQQPRTTGQAPPGKYVLLGAD"
     gene            complement(1002..1760)
                     /locus_tag="VF788_08635"
     CDS             complement(1002..1760)
                     /locus_tag="VF788_08635"
                     /inference="COORDINATES: protein motif:HMM:NF014430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934241.1"
                     /translation="MASKLTTPSARDMIEALIAGERDPAVLADLARGVMRKKIPELTM
                     ACAGRFSAQHALMCTLHLEHIDHLAEVITRLDTRIDEATLPFAQQTELLATIPGIGER
                     AAQVIISEIGVDMTRFPTAAHLASWAGLCPGNNESAGRHRSGKTRKGNQELCEILTEC
                     AWSAGRTSTYVGAQFRRFHRRFGKKGGQKAATATAHTLIVIIWHVLTETTAYRDLGPD
                     YFTRCIDNPEARKRRLVHELEALGHKVTIKPATA"
BASE COUNT          294 a          563 c          637 g          373 t
ORIGIN      
        1 ttttgtgacg tcccgcctat tcagggccga tcgtccatgg tgtcccgcct catttaagcg
       61 ggaacactgg cagccagcgt ggtggcttca aggcagctgt tcggtgatgg tcgacgccgg
      121 ggcgcatccg cggcttggtc atcatgacgt tgctttgcct gcgccggccc acagccagca
      181 acccagaaca acggggcagg caccgcctgg caagtacgtc ctgctcggcg ccgactagat
      241 gacgttgcgc aagggaaggt gtcgaaggcc acacgtggtg acagcaccag cccgtattac
      301 gtcaagcacc cacaagctct tactgatagt tactaccccc ggccgggcct tctcccgtgg
      361 ggcccggccg acacccacag accacctgcc gatgctggcg ccaggcactc gaaccccgaa
      421 cccgatgatg cccggtcagg agcttcgtaa tctgtctatc gcgccaagtg gtcaccgacc
      481 attacctggc ctgcgccttg gtggccataa gcgcccgctg atggtgttaa caacacgtgg
      541 acagcacgac gcgatggttg tcctgctcat cggataggtg ggctcgaagc aaatatccca
      601 tcgcgtcggc gggctcgtct cgtagcgggc caggtgcagg gatcgaggcg gagcacccgg
      661 cgactgaacg acatggaccc ctgcccctgg cccgctacac cttcgacgcc gacgccgacg
      721 cgacgggata cccgcattac ctggtgccac cgctctcgcg cccagccctg aggctatccc
      781 ggagctaggc ccgccggagg cattggattt ctccgtttcc gattgcgctc ttcggcgcct
      841 ctctgcgtca agttgctctt tgggtggggt tggtagggtc ggtgttggcg ggtccgggga
      901 gtgactgaga cgtaactgtg gtgaccaggc acgttctgga cgcaggggtc ggtgacctgg
      961 tactcagacc gggttggttg gtgatccatg ttggtgactg gctacgcggt ggcgggtttg
     1021 atggtgacct tgtgtccgag ggcttcgagt tcgtggacga gccggcgttt gcgtgcttct
     1081 gggttgtcga tgcagcgggt gaagtagtcc gggccgaggt cgcggtaggc ggtggtctcg
     1141 gtgagcacat gccaaatgat cacgatcagg gtgtgggcgg tggcggtagc ggccttctgg
     1201 ccaccctttt tgccgaaccg gcggtggaag cggcggaact gggcaccgac ataggtgctg
     1261 gtgcgcccgg cggaccaggc gcactcggtg aggatctcgc agagttcctg gttgcccttg
     1321 cgggtcttgc cggatcggtg ccgtccggcg gattcgttgt tgcccgggca taagccggcc
     1381 catgacgcca ggtgcgcggc ggtggggaac cgggtcatgt cgacgccgat ctcggagatg
     1441 atgacctggg cggcgcgctc accgattccc gggatcgtcg ccagcagctc ggtctgttgg
     1501 gcgaaaggga gggtggcctc gtcgatccgg gtgtccagcc gggtgatcac ctccgcgagg
     1561 tggtcgatgt gttccaggtg cagggtgcac atcagcgcat gctgggcact gaagcgccca
     1621 gcgcaggcca tggtgagctc ggggatcttc ttgcgcatca ccccacgagc cagatccgcc
     1681 agcacggcgg gatcgcgttc cccggcgatc aacgcctcga tcatgtcccg ggccgagggg
     1741 gtggtcaact tcgaggccac cgagtcgatc ttaattccac tgtcctcaag ggccttggcc
     1801 aggcgctgca atttcgctgg tgcgttgctc gatgagcttt ttgcggtagc gggtcaactc
     1861 ccggatc
//
LOCUS       DASVXZ010000414         4098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1277164, whole genome shotgun sequence.
ACCESSION   DASVXZ010000414 DASVXZ010000000
VERSION     DASVXZ010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1277164"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..977)
                     /gene="sucC"
                     /locus_tag="VF788_08640"
     CDS             complement(<1..977)
                     /gene="sucC"
                     /locus_tag="VF788_08640"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEX8934242.1"
                     /translation="MDLYEYQAKDLFHAHGVPVLPGRVVTTGARAGEAAAELGGSVVV
                     KAQVKTGGRGKAGGVQLAHTPEEAQRKAAAILGMAIKGHTVHRVLVTPACDIVEEYYL
                     SFLLDRTHRTFLAMASVQGGMEIEEVARTAPEALAKVPVDPRSGVDAAQAAAIIEAAA
                     FPAEVAQAATEAVLRLWEVFVAEDATLVEVNPLVRDPRGSIIALDGKVTLDDNAAFRH
                     PEHAELADSAGQDPLEARAKARHLNYVKLDGQVGIIGNGAGLVMSTLDVVAYAGRAHG
                     GMRPANFLDIGGGANAQVMADGLDIILGDPDVHSVFVNVFGGITACDQVA"
     gene            complement(1094..1501)
                     /locus_tag="VF788_08645"
     CDS             complement(1094..1501)
                     /locus_tag="VF788_08645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016696975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HEX8934243.1"
                     /translation="MSGRIRVVVAKPGLDGHDRGAKVVARALRDAGMEVVYTGLHQTP
                     EQIVETALQEDADAVGLSVLSGAHMTLFARVIELLESKGVSDVLVFGGGIIPEQDIPA
                     LRKLGVAKIFTPGASTHEIVDWVRAAVAAAAVE"
     gene            2334..2780
                     /locus_tag="VF788_08650"
     CDS             2334..2780
                     /locus_tag="VF788_08650"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEX8934244.1"
                     /translation="MAKGQRLVAENVAREAEASRIRFVLPTKGIFTSGYGARWGVFHW
                     GIDLANSIGTPILAAADGVVVESGPASGFGLWVRIRHSDGATTVYGHINRSLVTAGQK
                     VRAGEEIAEMGNRGNSTGPHLHFEVWNAAGQKINPIMWLHQHGINF"
     gene            complement(3367..>4098)
                     /locus_tag="VF788_08655"
     CDS             complement(3367..>4098)
                     /locus_tag="VF788_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEX8934245.1"
                     /translation="EGGPVVPVADGGAEPGSLAAFLERVALVADADQIPDDDGSSGVV
                     TLMTLHTAKGLEFPVVFLTGWEDGLFPHLRALGDPAELAEERRLAYVGLTRAQHRLYL
                     SRAITRSAWGSPMTNPASRFLSDVPESLVHWRREGSSHENHGRAGPAQRTVFGRHGAD
                     ITGADSAQAGVAARGLRSTSFPGWQNTPALSLDVGDRVTHDKYGLGTVVATDGSGPRA
                     TATIDFGSSGTVRLMLIGGVPLTKL"
BASE COUNT          719 a         1445 c         1273 g          661 t
ORIGIN      
        1 gccacctgat cgcaggcggt gatcccaccg aagacgttga cgaataccga gtgcacgtcg
       61 gggtcaccga ggatgatgtc cagcccgtct gccatcacct gcgcgttcgc cccaccgccg
      121 atatcgagga agttcgccgg ccgcattccc ccatgggccc ggcccgcgta ggccaccaca
      181 tcgagggtgg acatgaccag acctgcaccg ttgccgatga tgccgacctg cccgtcgagc
      241 ttgacgtagt tcaggtgacg ggcctttgcc cgcgcttcca acggatcctg cccagcggag
      301 tcggccagct cagcgtgctc ggggtggcgg aaggcagcgt tatcgtccaa ggtcaccttg
      361 ccgtccaagg caatgattga acctcgcggg tcgcggacga gcgggttcac ctccacgagg
      421 gtggcatcct cggcgacgaa gacttcccac aatctcagga cggcttcggt tgccgcctgc
      481 gccacctccg cagggaaggc agcggcctcg atgatcgcgg cagcctgggc ggcgtcgacg
      541 cctgagcgtg ggtccaccgg caccttggcc agcgcctcgg gagcggttct ggcgacctct
      601 tcgatctcca tcccgccctg cacactggcc atcgcgagga aggtgcggtg ggtgcgatcg
      661 agcaggaacg agaggtagta ctcctccacg atgtcgcaag caggagtcac cagcacgcgg
      721 tgcacggtat ggcccttgat ggccatcccc aggatcgcgg cggctttgcg ctgcgcctcc
      781 tccggggtgt gggccagctg cacaccacca gccttgcctc ggccaccggt tttcacctga
      841 gccttgacta cgaccgagcc accgagctca gcggcggcct ctcccgcccg ggcaccggtg
      901 gtgacaacgc ggccgggcag cacggggacg ccgtgagcgt ggaacagatc cttggcctgg
      961 tattcgtaca gatccacgtg gtcgacccta tccacccaca atgcagcggc agcccactgg
     1021 caccggtgac cgtgatcact ccactgtgat cactccacta cgatcgcggt actgggtgat
     1081 cgctgtactg ggatcactcg accgcggccg ccgccacggc cgcacgtacc caatcgacga
     1141 tctcgtgcgt actggcaccc ggggtgaaga tcttggccac tccgagcttg cgtagcgccg
     1201 ggatatcctg ctccgggatg atcccgccgc caaagaccag cacgtcggag acacccttgc
     1261 tttcgagcag ctcgatgacc ctggcgaaca gcgtcatgtg cgcaccggaa agtaccgaga
     1321 gtcccaccgc gtcggcgtcc tcctgcagcg ccgtctccac aatctgctcc ggcgtctggt
     1381 gcaggccggt gtagacgacc tccataccgg cgtcgcgcaa agcccgagca acgaccttcg
     1441 cgccgcggtc gtgcccgtca agtcccggct tggcgacaac cactcggatt cgtccactca
     1501 tcaaactcag cgtagctcgc gcaccagccg cattgacaac ttatggtgac cacatgaacc
     1561 ccgctagcca gctatgggac gccacgcatc agtcaattta attacgcatg gcacgcatgc
     1621 ggcggggttg gtggcgccct cgtcgctcgt tactacgtcc agcggatagg cgggacgccc
     1681 gggtacacac cctcctcact ctggacactc cgcaccacgc gcccggtgac cggagcatgg
     1741 caacgccggt ggagggtgtc gtcgccgagg cagcagtcaa cgtcaccaac ccgcctcacg
     1801 cctccatttc atagcgaaaa ccgaccgcct ggcgcggcag atcgaacgct ggccgatacg
     1861 gctggacgta tctcgggacg gcggcttgct cctgtgtgta gcccttcgtt accttcccgc
     1921 ggtccacggc cacgttccga gtacggctca cgggaaggca ggttttggct cgacaccgct
     1981 ccccaggcgg ccaccgacca tctctggtgg ttgaggcggc actaggtaca gagctccagg
     2041 gtccggctac ctccggcctt gcttcttcaa gtacgcgggt aaggcaccgg gtcacggctc
     2101 cctctcccac cgttcgcggt cgggtagtgg ttgcggctgt cgcagcaggc gctttcgtcg
     2161 ctgccggcca gacgatggac aacacagccg tgacaacctc tgacgacgcc ccgcttctgg
     2221 cgtctgcgaa gcaagcgtcg tcggtagtcg gtctcggcgg agctgcccct gctccggagt
     2281 accttcccgt aacccggcca gcggcccccg ccacagttga agcggtgcag gcaatggcca
     2341 agggtcagcg cctggtcgcc gaaaacgtcg ctcgcgaagc cgaagccagc cggatccgat
     2401 tcgtcctgcc gaccaagggc atcttcacct ccggctacgg tgccaggtgg ggcgtgttcc
     2461 actggggaat cgacctggcg aactccatcg gcacgccgat tctcgccgct gccgacggcg
     2521 tggtcgtgga gtccgggccg gccagcggct ttggtctctg ggtacgcatc cgccactccg
     2581 acggcgcgac gaccgtctac ggacatatca accgttcgct cgtgacggcg ggccagaaag
     2641 tccgagcagg cgaggagatc gccgagatgg gcaaccgcgg caactccacc ggccctcacc
     2701 tgcacttcga agtgtggaac gcagccggtc agaagatcaa cccaattatg tggctgcacc
     2761 agcacggcat caacttctga cggcgttact cgccagctca ctggccacca ccgcttgttg
     2821 gccagccgcc gaccagatgg gcgtgcgcgg tgcgccacac cgagcacagt gcgggccgcc
     2881 gatgccggcg cctgggccgg agtgtccgat cgcaatgtcg gcaacgtccg cggagaccag
     2941 caccgtgctg tgctaacaag ctccgccagg ctgcggcgag gggcaacagt cggccttgca
     3001 gcacgggcca ggtagttcct gggtccgccc cgcggagcat ccgctcgacc tcccgcaggt
     3061 acgcttccac gcgctcccgc aagatgcggc tcaaccgctc gtccatcccc cacccctaac
     3121 aacatagtcg aacgtctgtt cgaagactag gggctgggtc agacaattac gaacctcaga
     3181 ctccccggcc gtgcggccgg ggaaccggcg ccgtcgcggc ggacgaccgg caggagcggc
     3241 gcaacccgct tccaccgcca gttctcatcc gcgttcggcg ccgagacgta cattcgggcc
     3301 cgtgacacca cgggctcacc cacgcccgaa gatgatctat ttaccggatt gactcaataa
     3361 gctctatcag agcttcgtca acgggacgcc cccgatgagc atcagcctga ccgtcccgga
     3421 cgaaccgaaa tcaatggtcg cggtggcccg ggggccgctg ccgtcggtgg ccaccacggt
     3481 gcccaggccg tacttgtcat gcgtgacccg gtcccccacg tccagcgaca gcgcaggtgt
     3541 gttctgccag ccggggaacg aggtcgagcg caacccccgg gccgccaccc cggcctgcgc
     3601 agaatcagcg ccagtgatat cggcgccatg acgaccgaag actgtgcgct gggccggccc
     3661 ggcgcgccca tggttctcgt gactggagcc ctcccgtcgc cagtgcacca gcgactcggg
     3721 aacatcggac agaaagcgcg atgccggatt ggtcatcggc gatccccacg cggaccgggt
     3781 gatcgcgcgg gagaggtaga gccggtgctg ggctctggtc aatccgacgt aggcaaggcg
     3841 gcgctcctcg gcgagctcag ccgggtcgcc cagcgcgcgc aagtgcggga acaacccgtc
     3901 ctcccagccg gtgaggaaca ccaccggaaa ctccagcccc ttggctgtgt gcagggtcat
     3961 caaggtcacc acgccgctcg atccatcgtc atcggggatc tggtcggcat cagcgaccag
     4021 cgcgacccgc tccaggaatg ccgcaaggga cccaggttcg gcgccaccgt ctgcgaccgg
     4081 gaccaccggg ccgccttc
//
LOCUS       DASVXZ010000415         2563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_492608, whole genome shotgun sequence.
ACCESSION   DASVXZ010000415 DASVXZ010000000
VERSION     DASVXZ010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492608"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VF788_08660"
     CDS             complement(<1..474)
                     /locus_tag="VF788_08660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934246.1"
                     /translation="MTRGHEVVTPGCGRNDAANSALQLTTVRRPAPPLQPISEYTYEW
                     VTVDPVAAAVRIPEQPALPSIVEPKWMPPVDAPVNEPMVAVVDRAIQLPAPYWHVGWP
                     AAVSGTFLRADVARRLIAVADGLPEPFGLAVLDGWRPLELQRQIHRAAYQDATLPP"
     gene            complement(571..1077)
                     /locus_tag="VF788_08665"
     CDS             complement(571..1077)
                     /locus_tag="VF788_08665"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX8934247.1"
                     /translation="MSSATRFNRSQPAKPCRIAGVVRLAFELAVADIARDVARRHPEL
                     RAAHLQVFGFGSIEGRRVTDLAARAAMTKQSMHELIGYLQSHGYLTREPDPGDERARL
                     IRLTARGRELEEAVQAASARLHLSWRDRVGAERFDIVWSALQDIVGGSDPPPDEASLR
                     CLATCLGD"
     gene            1346..1468
                     /locus_tag="VF788_08670"
     CDS             1346..1468
                     /locus_tag="VF788_08670"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934248.1"
                     /translation="MSFRMLHIFEFRDGKISRENVWMDTATLMAQLIAPAAAAP"
     gene            1706..>2563
                     /locus_tag="VF788_08675"
     CDS             1706..>2563
                     /locus_tag="VF788_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citramalate synthase"
                     /protein_id="HEX8934249.1"
                     /translation="MFRTSPTGTPLGDDFHLYDTTLRDGAQREGISYSVADKLAVARL
                     LDALGVGFIEGGWPGALPKDTEFFARAAAGELDLKHAALVAFGSTRRAGLTAAEDPQL
                     QALLASRAPVITVVAKSDRRHVERALRVDVEQACAMVADTVALLVGEGRRVFLDAEHF
                     FDGYAFDADCALRVLEAAVTAGADVAVLCDTNGGQLPLQLAETVTEVVARTGFRVGIH
                     CQDDTACAVANSVAAVQAGATHVQCTANGYGERTGNADLFAVVGNLVTKLDLPVLPEG
                     ALVEMTRTSH"
BASE COUNT          424 a          872 c          855 g          412 t
ORIGIN      
        1 gggcggcagg gtcgcatcct ggtaggccgc ccggtggatc tggcgctgca actccagcgg
       61 acgccacccg tcgagcaccg caagcccgaa cggttccggc aatccgtctg cgactgcgat
      121 aaggcgacgc gcgacatctg cccgtaggaa cgtgccactg actgccgctg gccagcctac
      181 gtgccagtag ggagccggga gctgaatggc gcgatcgacc accgccacca tcggctcgtt
      241 caccggcgca tcgaccggtg gcatccactt cggctccacg atcgagggta gggccggctg
      301 ctcggggatg cgcacggcgg cggcgaccgg gtccacggtg acccactcgt aggtgtattc
      361 cgaaatcggc tgcagcggtg gcgcgggtcg acgaaccgtc gtcagctgca gcgcgctgtt
      421 ggcggcgtcg ttgcggccgc atccgggcgt caccacttca tggcctcgcg tcacaggagg
      481 cttcccccgg gtaggcagcg cagtcggtca tatccccgag gcggcggatg cgcgcacaga
      541 tacccgcgtc gaggaactag agcaaccgtc ttagtcccca aggcacgtgg ccaagcatcg
      601 caggctcgcc tcgtcaggag gaggatcgga accaccgacg atgtcttgca gcgctgacca
      661 cacgatgtcg aagcgttccg cgccgacccg gtcgcgccag ctcaggtgca ggcgcgcgga
      721 cgcagcctgc accgcctcct ccagttcccg tccccgggca gtaagccgga tgagccgggc
      781 acgctcgtca cccggatcgg gctcgcgggt caggtagccg tggctctgca ggtacccgat
      841 gagttcgtgc atcgactgct tggtcattgc cgcacgggcc gccagatcgg tgacccggcg
      901 accctcaatg gagccgaagc cgaacacctg caagtgagcg gcacgcagct ctgggtggcg
      961 acgcgcgaca tcgcgggcga tgtcagcaac cgctagttcg aaggccaggc ggacgacacc
     1021 cgctatccgg catggcttcg ccggctgtga tctgttgaac ctggttgcac tcgacacatc
     1081 cgtcaggtta ccttaccgtt tgaaagtcag ggcacctgac gagtatggag aggaacatga
     1141 cgacgcgcga gcaaatggat cgattgatcg accagcacgt atccgccgag gacgcgggtg
     1201 acatcgaggc ggccgtcgcg gtgtataccg acgacatcga gcacgatgca gtcggagctc
     1261 cggacggccc gctacgtggt gtagtggcgg tacggcgccg ctacgagcag ctcctccaga
     1321 acatgcagtc gatcgtggcc ggcaagtgtc gttccggatg ttgcacatct tcgagttccg
     1381 ggacgggaag atcagccggg agaacgtctg gatggatacc gccacgctga tggcccagct
     1441 gatcgcaccc gccgcggcgg ccccctgagc taccttgtcg acccgggctc gcaaggcgct
     1501 aagaccgttc cggcaaccct cgtggttccc ttcctccgcc acgtatgcca cactgcgctc
     1561 gtggcacacc acactgcgct gatcccctcg gggaccatta tcgctgagcg cgtcgggtaa
     1621 ccagcaccat tacctgacgc gcagacctct cgcatccgcg gggggtcttt tttgttggcc
     1681 agcacaacct cttggagtct cgacgatgtt ccgcaccagc ccaaccggca ccccgctcgg
     1741 tgacgatttc catctttacg acaccacgct gcgcgatggt gcccagcgag aggggatctc
     1801 ctactcggta gccgacaagc tcgctgtcgc ccgactactg gacgcgctgg gcgtgggctt
     1861 catcgaaggt ggctggcccg gtgcgctgcc caaggacacc gagttcttcg cccgggccgc
     1921 ggccggtgag ctggacctga agcacgccgc tttggtggcc ttcggctcaa ctcgccgcgc
     1981 tgggctgacc gcggcggaag acccccagct acaagcgctg ctggcctcgc gggcgccggt
     2041 gatcacggtg gtcgccaagt ccgaccggcg gcacgtggag cgggcgctgc gagtagatgt
     2101 cgagcaggcc tgcgcgatgg tcgccgacac tgtcgcactg ctggtcggcg agggtcggcg
     2161 ggtgttcctc gacgctgagc acttcttcga cggctacgcc ttcgacgccg actgcgcgct
     2221 gcgagtgctc gaggcggcag tcaccgcggg tgcggacgtc gccgtcctct gcgacaccaa
     2281 cggcgggcag ctgccgctgc agctcgcgga gaccgtcacc gaggtggtgg cccgcaccgg
     2341 cttccgggtg ggaatccact gccaggacga caccgcctgt gccgtggcga actcggtcgc
     2401 ggccgtccag gccggcgcca cgcacgtcca gtgcaccgcg aacggctacg gggagcggac
     2461 cggcaacgcc gacctgttcg ccgtcgtcgg gaacctggtg accaagctcg acctgcccgt
     2521 cctccccgag ggcgcgctgg tggagatgac ccggacctcg cac
//
LOCUS       DASVXZ010000416         1994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_134613, whole genome shotgun sequence.
ACCESSION   DASVXZ010000416 DASVXZ010000000
VERSION     DASVXZ010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134613"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VF788_08680"
     CDS             <1..205
                     /locus_tag="VF788_08680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934250.1"
                     /translation="LHERQWLPRLAPTPHTVDQPKMTARHAALGAVVHIEQDVVIEGD
                     LTRPTIASKRDTGQGLLFRRTDS"
     gene            complement(651..1751)
                     /gene="ychF"
                     /locus_tag="VF788_08685"
     CDS             complement(651..1751)
                     /gene="ychF"
                     /locus_tag="VF788_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX8934251.1"
                     /translation="MSLTLGIVGLPNVGKSTLFNALTRNNVLAANYAFATIEPNVGVV
                     PLPDDRLTVLAEMFGSARVVPATVSFVDIAGIVAGASEGAGLGNKFLANIREANAICQ
                     VVRVFDDPDVLHVEGRVDPADDIATVETELVLADLQTVDRALPRLEKEARTHPTQRRA
                     ALAAALAARQVLDTGRTLFAARTQLDVAALAELSLLTSKPFLYVFNADEGVLTDSERQ
                     AELRKLVDPADAVFLDAKVESELLELDPASARELLDSIGQPEPGLHALARAGFHTLGL
                     QTFLTAGPKEARAWTIRAGATAPEAAGVIHSDFQRGFIKAEIVSYQDLVAAGSMAVAR
                     AAGKIRMEGKDYVMADGDVVEFRTGLTSTSHK"
BASE COUNT          366 a          666 c          638 g          324 t
ORIGIN      
        1 cctccacgaa cgccagtggc tcccccgact ggcaccgacg ccacacaccg tcgaccagcc
       61 caagatgacg gcacggcacg cagcactcgg cgcggtggtg cacatagaac aggacgtcgt
      121 catcgaaggt gacttgacac gcccgacaat tgcctcaaaa cgagacacag gacaggggct
      181 cctcttccgt aggaccgact cctgatggaa ggtcttgttt tacgcggccc gtatctcgtc
      241 gatctttact cacatcactc gccgagctcc gcgggtaaaa caaaatcagt atgtcgctgg
      301 cttcatggcg tatggcgcca gctcgccgtt accacactgt gctgccggtg cgttgctgct
      361 cgcggcgccg gcggggaggt gaatccccga gcaggccgtc agcggcccca ccaccagcag
      421 aaccgcactc accgtggtgg cgaagtgcca gtgcccccac caatcccgga tcccacgatg
      481 cattgcctta acttgagcgg tccgtcggaa tgaagtgggg aaatatgcgg gtgacacacg
      541 ctgtcaagtg ccgtagccac gggggcactg gatcccacaa gccttcaccc gccatctgac
      601 taagtaccgc aacggccaag cctgcccact acgcaacaac accaaggcag ctacttgtga
      661 gaagtagatg tcagtccagt gcggaactca acgacgtcac catcggccat cacgtaatcc
      721 ttgccctcca tccggatctt cccagcggct cgggccaccg ccatggagcc ggcggcgacc
      781 agatcctggt aggacacgat ctcagccttg atgaatcccc gctggaaatc gctgtgaatc
      841 acgccggcag cctcgggagc ggtggcgccg gcccggatcg tccacgccct cgcctccttg
      901 ggcccggcag tgaggaaggt ctgcagtccc agggtgtgaa atccggcgcg ggccagtgcg
      961 tgcaggcccg gctcgggctg accgatcgag tccagcaact cgcgagccga cgccgggtcc
     1021 agttcgagca gctccgattc gaccttggcg tccaagaaca cggcatcagc ggggtcgacc
     1081 agcttgcgca gctcggcttg ccgctccgag tcggtgagca ccccctcgtc agcgttgaac
     1141 acatacagga acggcttgct ggtcagcagg ctgagttcgg ccagcgcggc aacgtccagc
     1201 tgcgtgcggg cggcgaacaa agtgcgcccg gtgtcgagca cctgccgggc ggctagcgca
     1261 gcggccagcg cggcgcggcg ctgtgtcggg tgagtgcggg cctccttctc caaccggggc
     1321 agcgcacggt ccacggtctg cagatcggcc agtacgagct cggtctcgac agtggcgatg
     1381 tcgtcggccg ggtcgacccg gccctcgacg tgcagcacgt ccggatcgtc gaagacccgg
     1441 acgacctggc agatcgcgtt ggcttcgcgg atgttggcca ggaacttgtt gcccagcccc
     1501 gcgccttccg aggcaccagc gacgattccg gcgatgtcga cgaacgacac ggtcgccggc
     1561 accaccctgg cgctgccgaa catctcagcc agcaccgtca accggtcgtc aggtaacggc
     1621 accacaccga cgttgggctc gatggtggcg aaggcatagt tcgccgcaag gacattgttc
     1681 ctggtcaacg cgttaaacaa ggtcgactta cccacgttgg gcaacccgac gatcccgagg
     1741 gtgaggctca cgagacgtca agtctaggcg ccacccgcca acaccggcgc atccagcggg
     1801 cgcagcgggg ctattgggcc ccggcacccc gctgagcccg cgcgatgcgt gcgaggcggc
     1861 gcgcctcgcc gaaactgtcg ggggggtgtt gcagggtgtg acgcgtgaat tactttgtgc
     1921 tcatcgcggt gttggtcgcg ctcgccgttg gggcggggat cagctgggtg gtggcgggtg
     1981 cactccggcg ggcg
//
LOCUS       DASVXZ010000417         2831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_851776, whole genome shotgun sequence.
ACCESSION   DASVXZ010000417 DASVXZ010000000
VERSION     DASVXZ010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_851776"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..901)
                     /locus_tag="VF788_08690"
     CDS             complement(<1..901)
                     /locus_tag="VF788_08690"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HEX8934252.1"
                     /translation="MRPPVPRFVRWAVALAVIAALTLAVFQYWGASQYGTVVAGSSQP
                     ATGGAATTEQNTGWMQTRWGPLSTADRDLLVMVRQAGLSGSTSGKLAQQQASNQQVRS
                     VAKRIWVDYGDLDNQVRAVAGKLGVPLPDLPTTAQQGWLKDLSGRSGAECDRMFAQGL
                     RVTDGEVLPAITAVRAGTRNELVRSFAANAAALVNRHMEVLERTGLVDYSKLSAPQLA
                     TADVAVGGPAQRIDQVVNATPVPTAGAVTGIDANAMVAALVSIAALLIALGLLGSTSR
                     RVRRAYVDPRHRGTPRGLPQRPQQ"
     gene            complement(938..2284)
                     /locus_tag="VF788_08695"
     CDS             complement(938..2284)
                     /locus_tag="VF788_08695"
                     /inference="COORDINATES: protein motif:HMM:NF013918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin reductase family protein"
                     /protein_id="HEX8934253.1"
                     /translation="MRRQLERTLWATAFLAVLLAPVLLAPVLHGPRAGDGSSLLSQLS
                     VGMGLLATSMLVCAVVLPSRVRSLTRTFGIDGVLTIHRFVGLAVTLLVGLHIVLVVVA
                     NPANLALLDVVHAPNRARAAVGATVALGALIALTLLRRRLRHRYEVWRWVHLALAGSV
                     LVLSALHVWWLNHLVRDASMRALLVVLALGVLGVLGYRWLWRPVFGAGRQYVVREVRP
                     ESSTVSTLVLQPRRSGSRRNCRALEFAPGQFAWLRLNPSIRAQEHPFTISSSAHLGLW
                     TEFTIRHSGDFTRELRLLRAGSPVWVDGPHGAFTLDLRRTTGLVMIAGGVGITPMMSM
                     LRTLAHRRDQRPHRLLVVAGTVDELLFRGEIRQLQQRLDLTVVEVLRRPPPSWIGASG
                     NIDERLLTALLPGQFRRNQLDYFLCGPPAMLIDVLTVLEGLDVPQPRIHTEQFDLV"
     gene            2456..>2831
                     /locus_tag="VF788_08700"
     CDS             2456..>2831
                     /locus_tag="VF788_08700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934254.1"
                     /translation="MDPTSHPAGHRLATTTRLLLPPMQIDQRSTVLRHPVLLMVPLRQ
                     TTSRVLQALRSTGFETRILDAVPDVLDAARAHNLAAIVLDIVLAGPDPRTFIDELRRV
                     APALPVIALTSREQREQTVSLLR"
BASE COUNT          542 a          959 c          922 g          408 t
ORIGIN      
        1 gttgctgggg ccgctgcggc aagccgcgag gagtgccacg gtggcgggga tcgacgtagg
       61 ctcgccggac ccgccgactc gtgcttccga gcagaccgag cgcaatcagc agcgccgcga
      121 tcgagaccaa ggccgcgacc atcgcgttcg catcgattcc ggtcacggca ccggccgttg
      181 gaaccggcgt cgcattgacg acctggtcga tgcgctgtgc cgggccgccg acggcgacat
      241 cggccgtggc gagttgcggg gcggagagtt tggaatagtc gaccagcccg gtgcgctcca
      301 gcacctccat gtgacggttg acgagtgcgg cagcgttggc ggcaaaggac ctgaccagct
      361 cgttacgggt accggctcgc acggcggtga tagccggaag cacttcgcca tcggtaaccc
      421 gcagcccttg cgcgaacatc cggtcgcact ctgcgccaga ccgtccggac aggtccttca
      481 accagccttg ctgcgccgtg gtgggtaggt ctggcagcgg tacaccgagc ttgcccgcca
      541 ccgcccgcac ctggttgtcg agatcgccgt agtccaccca gatgcgtttt gcgacggagc
      601 ggacctgctg gttactggcc tgttgctggg ccagctttcc gctcgtgctc ccggaaaggc
      661 ccgcctgccg gaccatgacc agcaggtccc gatccgcggt actcagcggg ccccaccgcg
      721 tttgcatcca gccggtgttc tgttcggtgg tggctgcgcc gccggtggct ggttggctac
      781 taccagcaac caccgtcccg tactgcgacg caccccagta ctggaacacg gcgagggtca
      841 aggcggcgat cacggccagg gcgacggccc atcggacgaa acggggtacc ggggggcgca
      901 aagcagaaac ctttctcggc aagggctgat gcgtgggcta gacgagatcg aactgctcgg
      961 tgtggatccg cggttgaggc acatccagcc cctcgagcac ggtcagcaca tcgatgagca
     1021 tcgcgggcgg cccgcacagg aagtagtcga gctggttgcg ccggaactgg ccgggtaaca
     1081 gtgccgtgag cagcctttcg tcgatgttgc cggaggcacc gatccagctc ggtggcggtc
     1141 gccggagcac ctcgacgacg gtgagatcca accgctgctg aagctgcctg atctcccccc
     1201 ggaacaacag ctcgtcgacg gtcccggcga ccaccagcaa ccggtgcgga cgctggtcac
     1261 gtcggtgcgc caacgtccgc agcatgctca tcatgggagt gatgcctacc ccgccggcga
     1321 tcattaccag accggtggtg cgccgcaggt ccagggtgaa ggcaccgtgc gggccatcca
     1381 cccacaccgg actgcccgcc cgcagcaacc gaagctccct ggtgaaatca ccgctgtgcc
     1441 ggatcgtgaa ctcggtccac aaaccgagat gagcgctgga ggagatggtg aacgggtgtt
     1501 cctgagccct gatcgacggg ttcaggcgca accaggcgaa ctggccggga gcaaactcaa
     1561 gggccctgca gttacgccgg gaacctgagc gcctgggctg aaggaccagg gtactcaccg
     1621 tgctggactc cggccggact tcgcggacca cgtactggcg gccggctccg aaaaccggcc
     1681 gccatagcca ccggtagccc agcaccccca gcacacccag cgcgaggacg acgagcaaag
     1741 cccgcatgga ggcgtcccgg acgagatgat tgagccacca gacgtgcagc gcactgagca
     1801 ccagcaccga gccagccagc gccagatgca cccaacgcca cacctcgtag cggtgtcgca
     1861 gtcgccttct cagcagcgtc agggcgatca gcgcgcccag cgccacggtg gcaccgacag
     1921 cggcgcgggc gcgattgggg gcatgcacca catcgagcaa cgccaggttg gccgggttgg
     1981 ccaccaccac caagacgatg tgcaaaccca ccagcagagt gaccgccagc ccgacgaagc
     2041 ggtggatggt cagtacgcca tcgatgccga aggtgcgggt cagcgagcgc actcgggatg
     2101 gcagcacaac ggcgcagacc agcattgacg tggcgagcaa ccccatccca acggaaagct
     2161 gggacagcag cgaggagcca tccccggcac ggggaccgtg caacaccggc gccagcaaca
     2221 cgggcgccag gagcacggcg aggaaggccg ttgcccatag cgttcgttcc agctggcgtc
     2281 gcacgccccg aaccgtaggg agaaccgggt acctaaccgg cgcaacctga gagcgttacc
     2341 ggcctgaggt cgcccacccg gccgtgaggc gcgacgaacg acagtcaatt actccgaaca
     2401 gcccggacgt tactccattt gccgcacacg accttcaaca agaaccggta atccgatgga
     2461 tccgaccagt catccggccg gtcatcgatt ggccaccacc acacggctac tgttgccgcc
     2521 gatgcaaatt gatcaacgat cgacggtgct acggcatccc gtgctgctga tggtgccgtt
     2581 acgtcagaca acgagccggg tgcttcaggc gttacggtcc acggggttcg aaacccggat
     2641 cctggacgcc gtcccagacg tgctggacgc agcccgcgcg cacaatctcg cggcgatcgt
     2701 gctcgacatt gtcctagcgg gcccggaccc gcggaccttc atcgacgagc tgcgcagggt
     2761 cgccccagcg ctcccggtca tcgcactgac ctcccgcgag caacgagaac agaccgtgtc
     2821 actgttgcgg g
//
LOCUS       DASVXZ010000418         4670 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1456616, whole genome shotgun sequence.
ACCESSION   DASVXZ010000418 DASVXZ010000000
VERSION     DASVXZ010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1456616"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(199..870)
                     /gene="rsmG"
                     /locus_tag="VF788_08705"
     CDS             complement(199..870)
                     /gene="rsmG"
                     /locus_tag="VF788_08705"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEX8934255.1"
                     /translation="MDGRAASRVVFGDRYELAERYAEMLVGSGVDRGVIGPREADRLW
                     ERHLLNSAVLGELIPAGARVLDVGSGAGLPGIPLAIARPDLRIVLLEAMARRVAWLEE
                     AVTELGLGVPVHRGRAEDPGVRRELGGNDVVTARAVAPLGRLAGWCLPLVAAGGRLLA
                     VKGASAGAEVARDLDAVRAAGGAATEIVQCGANIVQPPTTVIVVPRLAQRVTRPARAR
                     RRKDR"
     gene            complement(1050..1535)
                     /locus_tag="VF788_08710"
     CDS             complement(1050..1535)
                     /locus_tag="VF788_08710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="R3H domain-containing nucleic acid-binding
                     protein"
                     /protein_id="HEX8934256.1"
                     /translation="MGSAPVSEDLLVQEGDVAGDYLERLLDVVDYDGDIDLYVEAGRA
                     MVSIDGGDDLAKLVGPRGVVLEALQELTRLAVQQQTGARSRLMLDIAKWRAVRRSDLG
                     ELGRTTARRVLEGGEPIRLQPMTPFERKIVHDAVADLDGVYSESDGEEPQRCVVVFPS
                     A"
     gene            complement(1687..2811)
                     /gene="yidC"
                     /locus_tag="VF788_08715"
     CDS             complement(1687..2811)
                     /gene="yidC"
                     /locus_tag="VF788_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005460629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEX8934257.1"
                     /translation="MLNFIYYPVSAILWFWHKAFGYVLGPGNGFAWALAVVFLVFTLR
                     AVLFKPFVSQVRSMRKMQEFAPEIQKLKKKYGDDRQKMATEMQKLQSEHGVNPLGGCL
                     PVLVQIPVFIGLFHVLRSFNRPFLSAEANREVGNYVFSAVDVRSFLDAHLFGVPLSAF
                     ITEPAELLSRYGDISRWQIAAVAIPLTIVAGVLTHLTAKHSVERQTAAQAANPQAAMM
                     NKLMVYLFPVGVVAGGPFFPLAILLYWLSNNLWTLAQQRVVYQRIDAEEAEKKETAVA
                     QRQVLAPKPGQKPNRPKKDGTASAANLADGDTPPGSDEDIESASTNGARLQAPGSGDV
                     SLGSTGTSNGQGSARADSSPPPGMIQQRPRPRKKSNRKRR"
     gene            complement(2811..3119)
                     /gene="yidD"
                     /locus_tag="VF788_08720"
     CDS             complement(2811..3119)
                     /gene="yidD"
                     /locus_tag="VF788_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX8934258.1"
                     /translation="MTASRPEPAPDCPAGPAARILVVILRFYRRWISPALPPTCRFSP
                     SCSAYAIEALTVHGALRGSWLTARRLLRCQPWHPGGVDPVPPAAVHAATSRAKAESES
                     "
     gene            complement(3116..3502)
                     /gene="rnpA"
                     /locus_tag="VF788_08725"
     CDS             complement(3116..3502)
                     /gene="rnpA"
                     /locus_tag="VF788_08725"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005446416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEX8934259.1"
                     /translation="MLPAATRLTRREDFATAVRRGRRAGCGSVVVHLARDSDVDAVGL
                     PPRVGFVVGRTVGGSVVRHRVQRRLRHLMRARLGSLPSGALVVVRALPASADATSATL
                     GGDLDGTLRRLIGAGRPSSAHPGSQR"
     gene            complement(3525..3668)
                     /gene="rpmH"
                     /locus_tag="VF788_08730"
     CDS             complement(3525..3668)
                     /gene="rpmH"
                     /locus_tag="VF788_08730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003082934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEX8934260.1"
                     /translation="MSKGKRTFQPNNRRRARTHGFRLRMRTRAGRAIIAARRRKGRSE
                     LSA"
     gene            4134..>4670
                     /locus_tag="VF788_08735"
     CDS             4134..>4670
                     /locus_tag="VF788_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012782638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiation protein DnaA"
                     /protein_id="HEX8934261.1"
                     /translation="MSERQTDLGQVWNEVVRELSSGTLSPQQRAWMRVTRPIGLLDGT
                     ALLAAPSDFAKDAIERALREPISAALSRHLGRQVSLAVKVDHPLPVPPQLPPQFTEPG
                     SAVSDDFSMVGAAMNGQVGGPAASPGKHDEEEAALATVNEIWPSFAGPAAAAPTRPPS
                     SQTRLNEKYTFDTFVIGAS"
BASE COUNT          814 a         1684 c         1449 g          723 t
ORIGIN      
        1 gcgccggcac atcagcggcc ggctggggtg cacgagtgcg agcgtgccgt ggcctcgatc
       61 cgcccgtcgc gctgtactga gccgtggttt cacgtgaaac agcgagcctc gaaggcgcgg
      121 caacgttgga cgggacattg cgttgcacca cgtcatccgg ctgcgccgcg ctcgcgggcc
      181 atttcggggg gctcacgctc accgatcctt cctccttcgt gctctcgcag ggcgagtaac
      241 acgctgggcc agccggggaa ccacgatgac tgtggtcggt ggctgcacaa tgttggcacc
      301 gcactgcacg atctccgtgg ccgcccctcc ggcagcccgc accgcgtcaa ggtctcgagc
      361 gacctccgcc ccggcgctgg cacccttcac cgcgagtagc cgaccacccg ccgctaccaa
      421 cgggaggcac caccccgcca acctgcccaa cggcgcaacc gcccgggccg tgacgacatc
      481 gttgccacca agctcccgcc gcacccccgg gtcttcggcg cgaccacgat gcaccggcac
      541 gcccagaccg agctcggtaa cggcttcctc tagccacgcc acccgtcggg ccattgcttc
      601 cagcaacacg atccggagat ccggacgagc gatcgccagc ggtattcctg gcaggcccgc
      661 gccggagccc acatcgagca cccgagcacc agcgggtatc agttccccta gcaccgcgga
      721 attgagcaga tgccgttccc acaggcggtc cgcttcccgg ggaccgatga cacctcggtc
      781 aaccccggat ccaacgagca tctccgcgta ccgctcagcg agctcatatc gatccccgaa
      841 caccacccgc gacgcggctc gaccgtccat tgcgctcggc gatccggttt cagccggata
      901 agccgacgat ccagtcgtca ccgggtgagc cgacgaatcg atggcggcag gcccaatcgg
      961 tcgccggagc ccacatgttt cacgtggaac gccaaccact cacgcgccgc aatcggaggg
     1021 gatcgggttc gcgcagattc caggccagat cacgcagagg ggaacaccac gacacaacgt
     1081 tgcggctcct cgccgtcact ctcgctgtac acgccgtcca agtctgccac cgcgtcatgc
     1141 acgatcttcc gctcgaaggg cgtcatcggc tgcagccgga tcggctcgcc gccctcaagt
     1201 acccgccgcg cggtcgttcg acccagctca ccgagatcgc tgcgacgaac ggcgcgccac
     1261 ttcgcgatgt ccagcatcag cctgctccgc gcacccgtct gctgctgcac ggcgagccgg
     1321 gtgagttcct gaagcgcctc aagtaccacg ccacgcgggc ccaccaattt cgccagatcg
     1381 tccccaccat cgatactcac catggcgcga cccgcctcga cgtagaggtc gatgtcgccg
     1441 tcgtagtcga cgacgtcgag cagccgttcg aggtagtcac ccgcaacgtc gccttcttgg
     1501 acgagcagat cctcgctcac cggtgcgctg cccaccgcgc cgtctcccgc gccaccggcc
     1561 tcggccggcg agtccgctcc accagccagt gtctcagcgg ccgatgtctc cgccgaggtc
     1621 tcagtcaccg ctgtctcagt cgccagcgtc tccgccacaa ctgcctcctc tccggcgatc
     1681 acgccctcag cgacgcttcc gattcgactt cttccgcggt cgtggccgct gctggatcat
     1741 gccaggcggc ggcgagctgt ccgcacgggc cgagccttga ccgttcgacg tccctgttga
     1801 accaaggctc acgtcgcccg atccaggtgc ctgcaggcga gcaccgttag tggaagccga
     1861 ctcgatgtcc tcatccgagc ctggtggggt atcaccatcg gcaaggttag cggcgctcgc
     1921 ggtgccgtcc ttcttcggtc ggttgggttt ctggccgggc ttgggcgcca gcacctgccg
     1981 ttgggcgacc gcggtctcct tcttctccgc ttcctccgca tcgatccgct ggtagaccac
     2041 ccgttgctga gcgagcgtcc acaggttgtt cgacagccag tacaacagga tggctaaggg
     2101 gaagaaggga ccgccggcga ccacgccaac cgggaacagg tagaccatga gcttgttcat
     2161 catcgcggct tgcgggttgg ccgcctgtgc cgcggtctgc cgctccaccg agtgcttcgc
     2221 cgtgaggtgg gtgagcaccc cggccacgat ggtcaggggg atagccaccg cggcgatctg
     2281 ccaccgggag atgtccccgt agcgggacag cagctctgcc ggttcggtga tgaacgccga
     2341 cagcggaacc ccgaacagat gcgcatccag gaacgagcgc acgtcgaccg cgctgaatac
     2401 gtagttaccg acctcccggt tcgcctcggc agacaggaac ggccggttga acgaacgcag
     2461 cacgtggaac aggccgatga acaccgggat ctgcaccagc accggcaggc agccgcccag
     2521 cgggttgaca ccgtgctcag actgcagctt ctgcatctcg gtcgccatct tctggcgatc
     2581 gtcgccgtac ttcttcttca gcttctggat ctccggtgcg aactcctgca tcttgcgcat
     2641 cgaccggacc tggctgacga acggcttgaa cagcaccgcg cgcagggtga acaccaggaa
     2701 caccacggcc agcgcccaag cgaaaccgtt acccggcccc agcacgtagc cgaacgcctt
     2761 atgccagaac cacaagatgg ccgacaccgg gtagtagatg aagttcagca ctacgactca
     2821 ctctcggcct tggcgcggga cgttgcggcg tggacggcgg cggggggaac cgggtccacc
     2881 cctccagggt gccagggttg gcagcgcagt agccgtctcg ccgtcaacca cgaccctctc
     2941 agcgccccgt gaacggtcag cgcctcgatt gcgtatgcgc tgcaactcgg cgagaaccgg
     3001 caggtcggcg gcagggccgg agagatccac cggcggtaga accgtaagat cacgaccagg
     3061 atccgagccg ctgggccagc aggacaatct ggcgcaggct cagggcgcga agccgtcatc
     3121 gctggctacc ggggtgtgct gagctgggtc tgccggcacc gatcagccgc cgcaacgtcc
     3181 cgtcaaggtc accacccagg gtcgcgctag tggcatccgc tgacgccggc agcgcgcgaa
     3241 ccaccaccaa cgctcctgac ggcaacgatc ccaaccgcgc ccgcatcaga tgccgcagcc
     3301 gtcgctgcac ccggtgccgg accaccgaac cgcccactgt gcgaccaacc acaaagccca
     3361 ctcgtggcgg taatccgacg gcatcgacgt cactgtcgcg ggcaaggtgc accacaaccg
     3421 agccgcagcc cgcccggcgg ccccgccgaa ccgccgtcgc gaagtcctcg cggcgggtca
     3481 atcgggtcgc agcaggcaac aacgggacag atccccggaa tgcgtcaggc cgacagctca
     3541 gaacggccct tgcggcgccg ggccgcgatg atcgcacggc ccgcgcgggt gcgcatgcgc
     3601 aaccggaacc cgtgggtcct cgcgcggcga cggttgttcg gctggaacgt gcgcttgccc
     3661 ttactcacgg ctgtcattct cccggtgctg ggtgctcggt tggagattgc ggggtcgcag
     3721 ccgtcgggac tgcgtcgtgt cgccgcccta ccggcacagg tggcacttct gcgcgacgac
     3781 ctcacccggt cagcgaacca aatcagccgt aggcgagggc acgcaagaat gcccaccggt
     3841 gggcgggaga cgcccagagc ttaggcggcc agtggcggtg ccgtcaaaac gaacgtctcg
     3901 cgtcaccgtc ggggcgacac gccgttacat cggtggtgct tgcttacacg gggttcttgt
     3961 ggcagcaccc caggcttgtt agcttgcggc gccctacata gccggacgct gctcgccaag
     4021 ctggcacgtc gggacgcggg gagggcgccc accattgtca tccacagctg tggacaacct
     4081 tgtggataca tagtgctcct caagttcacc accggccgaa ggggagtcag cgggtgtcag
     4141 agcggcaaac cgatctcggc caggtctgga acgaggtcgt tcgagagctc tccagcggca
     4201 cgctctcacc gcagcaacgc gcgtggatgc gcgtcactcg cccgatcggt ctgctggatg
     4261 gcaccgcgct gctcgcggct cccagtgact tcgccaaaga cgccatcgaa cgcgcgctgc
     4321 gggaacccat tagcgccgca ctgtcccggc acctgggtcg gcaggtctca ctggcggtga
     4381 aggtcgatca tcccctgcca gtgccaccgc agttgccgcc gcagttcacc gagccgggca
     4441 gcgcggtctc cgatgacttc agcatggtcg gagccgcaat gaacgggcag gtcggcggcc
     4501 cggccgccag tcctggcaag cacgacgagg aggaggccgc gctggccacc gtgaacgaga
     4561 tctggcctag tttcgctggc ccggccgccg cggcaccgac ccgaccgccg agttcccaaa
     4621 ccagactcaa cgagaagtac accttcgaca ccttcgtgat cggcgcgtcc
//
LOCUS       DASVXZ010000419         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_493213, whole genome shotgun sequence.
ACCESSION   DASVXZ010000419 DASVXZ010000000
VERSION     DASVXZ010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493213"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..609
                     /locus_tag="VF788_08740"
     CDS             <1..609
                     /locus_tag="VF788_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ornithine
                     acetyltransferase/N-acetylglutamate synthase"
                     /protein_id="HEX8934262.1"
                     /translation="CVLTTDAVVDASTLDAVLRRATTETFEHLDVDGTCSINDTVLLL
                     ASGSSETAPDKAEFEAAVQQVCHELVRELLADAEGATKEVSIIVRGAADDVDALTAAR
                     TIARDNLVKTAFFGSDPNWGRIAAAAGASPATVRADTLDIRINGVLLCEHGAVAEQRS
                     KVNLSGREITVEVDLHLGPGEATVLTTDLSHGYVEENSAYSS"
     gene            606..1511
                     /gene="argB"
                     /locus_tag="VF788_08745"
     CDS             606..1511
                     /gene="argB"
                     /locus_tag="VF788_08745"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEX8934263.1"
                     /translation="MTSAIDTPAQKAAVLAEALPWLQRFHGTTVVIKYGGNAMLDDQL
                     KRAFAQDMVFLRLAGLRPAVVHGGGPQINAMLDRLGIADEFRGGLRVTTPETIDVVRM
                     VLFGQVGRELVGLINAHGPFAVGISGEDAHLFTAARRTATVDGEQIDVGLVGDVVAVN
                     PAAVLDIVNAGRIPVVSGLAPDIDGVVHNINADTAAAALAVALGAEKLVMLTDVEGLY
                     ADWPDRSSLLSEVTADRLERLLPDLSAGMVPKMEACLRAVRGGVSQAHVIDGRVAHSV
                     LLEVFTTEGVGTMVLPEEEPHRGDA"
BASE COUNT          283 a          518 c          545 g          276 t
ORIGIN      
        1 tgcgtactca ccaccgacgc cgtcgtcgac gcatccaccc tggacgccgt gctgcgccgt
       61 gccaccactg aaacgttcga acacctcgac gtcgacggca cctgctcgat taatgacacc
      121 gtgttgctac tggcctcggg ctcctcggaa accgcgccag acaaggcgga gttcgaagca
      181 gcggtgcagc aggtctgcca cgaactggtg agagagctcc tagccgatgc cgagggtgca
      241 accaaggagg tctcgatcat cgttcgtgga gcggctgacg atgtcgacgc gctgaccgct
      301 gcccgcacaa tcgcccggga caacctggtc aagaccgcat tcttcggctc agaccccaac
      361 tggggccgga ttgccgccgc agcaggggcc tcgccggcca ccgtgcgggc cgacaccctg
      421 gacattcgga tcaacggggt actgctctgc gaacatggtg cggttgcaga gcagcgctcc
      481 aaggtgaatc tgtccggtcg ggagatcacc gtggaagtcg atctgcacct cgggccggga
      541 gaggccaccg tgctcaccac cgacctctcg cacgggtacg tcgaggagaa cagtgcgtac
      601 tcgtcgtgac cagcgcaatc gataccccag cacagaaagc cgcggtgctc gccgaggcac
      661 tgccctggtt gcagcgcttc cacggaacca ccgtcgtgat caagtacggg ggcaacgcga
      721 tgctggacga tcagctcaag cgggccttcg cccaggacat ggtcttcctc cggctcgccg
      781 ggttacgccc tgctgtagtg cacggtggcg gtccgcaaat caacgccatg ctggaccggc
      841 tgggcatcgc agacgagttc cgcggtgggc tacgggtcac cacaccggag acgatcgacg
      901 tggtgcgcat ggtgctgttc ggccaggtgg gcagggaact cgtcgggctg atcaatgcgc
      961 atgggccgtt cgcggtcggt atctcgggcg aggacgcaca tctgttcacc gctgcgcggc
     1021 gcaccgccac cgtggacggc gagcagatcg acgtgggatt ggtcggtgat gtggtcgcgg
     1081 tgaacccggc ggcggtgctc gacatcgtca acgccgggcg tatcccggtg gtctccgggt
     1141 tggctccgga catcgacggc gtggtgcaca acatcaatgc cgacaccgcc gcggcggcac
     1201 tagccgtcgc gctgggcgct gagaagctcg tcatgcttac cgacgtcgag ggcctttacg
     1261 ccgactggcc ggatcgctcg agcctgctgt cggaagtcac cgcagaccgc ttggagaggc
     1321 tgctaccgga cctgtccgcc gggatggtgc cgaagatgga agcctgcttg cgcgcggtcc
     1381 gcggcggggt gtcacaggct cacgtgatcg acggccgggt cgcgcattct gtgctgctcg
     1441 aagtcttcac caccgaaggg gtcggcacca tggtgttgcc tgaggaagaa ccccacagag
     1501 gggacgcctg atgcctaccg cggattatca gcgtcgctgg gaagccgcct tgatggccaa
     1561 ttacggcaca ccttccctgg ccttgatccg tggtgccggc gccgaagtgt gggatgtgga
     1621 cg
//
LOCUS       DASVXZ010000420         2870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_314020, whole genome shotgun sequence.
ACCESSION   DASVXZ010000420 DASVXZ010000000
VERSION     DASVXZ010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314020"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VF788_08750"
     CDS             <1..186
                     /locus_tag="VF788_08750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934264.1"
                     /translation="DYQGQISPSSIYNADNHLTGTFFNPTIAHHPKPAPTSYPWPGRS
                     STPQGEDHRPGRHNSPW"
     gene            1048..2694
                     /locus_tag="VF788_08755"
     CDS             1048..2694
                     /locus_tag="VF788_08755"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX8934265.1"
                     /translation="MRPTTDVGEILDGFDYVVVLMLENRSFDNLLGYLYPDGVPDNAP
                     AGKTFDGVAGKNLANPIPATATGQSAPPRGVTSIPVSPMPDPPDYHQPYPDPGEEYYH
                     VNTQLFDVIDGNDKAPYNLPSPVPATPGMQGFVSDYIASFPLGDTDGGAGPKYQQYRP
                     IMQCFRPEQVPVLTTLAEQFAVFDHWFCSVPSHTCCNRAFWHAGTSWGHVINFGDPDY
                     YDKNTASWVADGIGETLFNKISDSGLSSPLDWRVYSSNEASLTGIIHAGALAAYHTPL
                     DDHFPRLEDFFTDCAAGTLPKYSFLEPVFWTPHNDQHPSTWNDKHYGPDVVGSVLLGE
                     ELIWSVYNAIKNSTGAHGGKGNSWRNTLLIITHDEHGGCYDHVAPPTGVTPPDLSDYT
                     KWDDFDFTRLGVRVPMVMVSAHIAPNTVINTCHDHTSFLKTMFEKWSRYITGPLTARD
                     AAARDFREVFTAPVLRDVSTWPDIPKPQIPAGLWDIDFSTVPLNDLQRSIVAGAAAVA
                     GVPLPQQPQTQGEAIAFLRELRALKRLPGQNPRPSGNPCG"
BASE COUNT          577 a          934 c          829 g          530 t
ORIGIN      
        1 gactaccagg gccagatctc cccctcaagc atctacaacg ccgacaacca cctcaccggc
       61 accttcttca acccaaccat cgcccaccac ccgaaacccg caccaaccag ctacccatgg
      121 cctgggcgat catcaactcc ccagggtgaa gaccatcggc caggtagaca caactcacct
      181 tggtagacgg taatagatag ggcttatgtg gatgagggcc cactgttccg gaaccgttgc
      241 ccgagatcag ctctggcggc acttctggtc agctggttcg cggttgtccc cgcgcgcaag
      301 ggactgatcg gacgactcgc actcagttcc acaccatccc cttgtttgct ctcctgcgga
      361 tagagcgtcg gctggcaccg gaatagtggg atcgtatcgg gatgagctga gacgaaactg
      421 agacgggcgg caagcgcgcg ctgaccttac gtaggacagc tgcttgttat cgcaaactga
      481 tcgaaatgtc aattatacag agtggctgcg atcctcgatt gcgctacatg atctcagatt
      541 tgtagctaac gtgtcctcat cacgtagctg tctgcagcag ggctgttagc cgtcccctgt
      601 tcgcctactg gacgcctatc gttcactcct ggcagcaagt gtctccttca tgaaatcggc
      661 ggctgtacgc aacgacatgg cggccgttca gctcgtgaat ctttcggcgc atcacacgcc
      721 gctgccgcgc aggagctagg gtgggcgcac cgctaccgag tcagcggtga agtcgcgatc
      781 actcggtctc cgctgtcaca gggtgccgtt ccgagacggc gtcaaggctg ataatgtaac
      841 tgacagggta gagataatca ccaggttgtc gaacttgatg aactgtgccc tccatgaaac
      901 ggcacctaag gtgccagcaa agagggccga agacggtgag caccgcgagc gggacaattg
      961 cacatattac tattacagtc cgctctacgg ctcgtccgga cgcggtgagc agcccgcact
     1021 aatacctgac gccgaaggga tgcagtgatg cgaccaacta ctgatgtggg tgaaattctc
     1081 gatggtttcg actatgtcgt cgtactgatg ctggagaacc gctcctttga caatctgctg
     1141 ggttacctgt acccggacgg cgtgccggac aacgcaccag cgggtaagac ctttgacggt
     1201 gtggcaggca agaatctggc taacccaatc cccgccaccg cgaccggcca gtccgcaccg
     1261 cctcgcggtg tgacgtcgat tccggtctcc ccgatgcccg acccgcccga ctatcaccag
     1321 ccttatcctg atccggggga ggagtactac catgtcaaca cgcagctgtt cgatgtgatc
     1381 gacggcaatg acaaggcgcc ctacaacttg ccgagcccgg taccggcgac accggggatg
     1441 cagggattcg tgagtgacta catcgcgagc ttcccgcttg gcgacacgga cggtggcgcc
     1501 ggtccgaaat atcagcagta tcggccgatc atgcagtgtt tcaggccaga gcaagtgccg
     1561 gtgctcacca cgctcgccga gcagttcgcg gttttcgatc actggttttg ctcggtgccc
     1621 agccatacct gttgcaaccg cgcattctgg catgccggca cgtcctgggg acacgtcatc
     1681 aactttggcg accccgatta ctacgataag aacaccgcca gctgggtggc tgacggtatc
     1741 ggcgaaacgc tgttcaacaa gatctctgac agcgggctga gctccccgct ggattggcgg
     1801 gtgtacagca gcaacgaggc ctcgctgacc gggatcatcc acgccggggc cctcgccgcc
     1861 taccacacgc cgctggatga ccacttcccg cgcttggagg acttcttcac cgactgcgcg
     1921 gccggcacgt taccgaagta ctcgtttctt gagccggttt tctggacgcc gcacaacgac
     1981 cagcatccct ctacctggaa cgacaagcat tacggtcccg acgttgtggg cagcgtgctg
     2041 ctgggtgagg agctcatctg gtcggtgtac aacgcgatca agaattcgac gggcgctcac
     2101 gggggcaagg gcaacagctg gcgtaacacg ctgctgatta tcacccacga cgagcacggc
     2161 ggctgttacg accacgtcgc gcctcccacc ggagtcaccc cgcccgacct gtccgattac
     2221 accaagtggg acgatttcga cttcacccgc ctcggcgtgc gcgtgccgat ggtgatggtc
     2281 tccgcgcaca tcgcgccgaa cacggtcatc aacacctgcc atgaccacac ctcgttcctc
     2341 aaaacgatgt tcgaaaagtg gagccgctac atcacgggac cactgaccgc acgggacgct
     2401 gccgcgcgcg acttccgcga ggtgttcacc gcaccggtcc tgcgcgatgt ctcaacctgg
     2461 cccgatatcc cgaaaccgca gatccctgcc gggctctggg acatcgactt cagcacagtc
     2521 ccgctcaacg acctgcagcg ttcgatagtg gccggtgccg ccgcggtcgc cggcgtcccc
     2581 ctgccgcagc agccgcagac acagggcgag gcgatcgcgt tcctacgcga gttgcgcgcg
     2641 ctcaaacgtc tgcccggcca gaacccgcgc ccgagcggca acccttgcgg gtgatatggg
     2701 cagggcttca ccgaaccgcg gaccacgatg atgcgcggac ccaccggatc aacctcgacg
     2761 ttgaggctgg acggcgtgcc gggcgccact gtctggaccc gacgtcgtcg agcggcaccc
     2821 ggggcagcga gcgcggtcga gtctccagcg cgcggacgtg aatcccgcat
//
LOCUS       DASVXZ010000421         2529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1366677, whole genome shotgun sequence.
ACCESSION   DASVXZ010000421 DASVXZ010000000
VERSION     DASVXZ010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1366677"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1158
                     /locus_tag="VF788_08760"
     CDS             <1..1158
                     /locus_tag="VF788_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007028956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEX8934266.1"
                     /translation="TNRGVDVISIGLASTDMLYFASGSLDLPGAMFTASHNPARYNGI
                     KLCRAAATPVGQDSGLREIRVAVERGIQPGPGGGVVTKRDMLTDYARYLRSLVDLSEI
                     RPMRIVVDAGNGMGGYTVPAVVEGLPLHVIPLYFELDGNFPNHEANPLDPANLVDLQV
                     AVREHGADLGLAFDGDADRCFAIDERGEPVSPSAITALVATRELANEPGATVIYNLIT
                     SQAVPEIVAEHGGRPVRTRVGHSFIKQLMAETGAIFGGEHSAHYYFRNFWRADSGMLA
                     ALHVLAALGHQHRPASALMAEFSRYAASGEINSTVDHPEGRIAAVRAHFVAQDDVELD
                     ELDGLTVRCPDGSWFNLRPSNTEPLLRLNVEARTITAVEALRDEVLALVRE"
     gene            1175..1426
                     /locus_tag="VF788_08765"
     CDS             1175..1426
                     /locus_tag="VF788_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEX8934267.1"
                     /translation="MAVKLDPQLREILACPCSAHAPLRDGTAADPEADALTCTVCGRS
                     FAVTDGIPVLLLDEALLGTGPDANGTDSDEGRASGLGPR"
     gene            1426..>2529
                     /locus_tag="VF788_08770"
     CDS             1426..>2529
                     /locus_tag="VF788_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016337107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEX8934268.1"
                     /translation="MRPGREFDDDLLDDPGRLEATDSGGLLRAAATAGAQVRSTAAVA
                     EEAGLGRLAGQRPRALVLLTRPGAAPAAAPLLLALLGPSCPVPVVTTRSVPMWVGALD
                     IVLANTTDPGDRELAEGLDRAVRRGAQVVLSAPADGPVAAAAAGRSVLLIPPIEVPPG
                     LTLPRNLTAGLLLLDALELLATDPEVLAGELDREAERDYVAHEALVNPAKSLALRLRG
                     RTPLLWGTDPVATAVAGHCAGALAAHAGVVAHAAGFHEAAALPVLRQQASRASGEAEI
                     FRDPFEDPFEGRSKEQSRGGMPAMRPVLLGVLAEARDVPERMAAVDALPGADVVTADE
                     ELMVRQGDPGAAACAAAVLALRFDFAALYLGLSQ"
BASE COUNT          376 a          816 c          896 g          441 t
ORIGIN      
        1 accaaccgcg gtgtggatgt catctcaatc ggtctggcca gtaccgacat gctctacttc
       61 gcctcgggat cgctggacct accgggcgcg atgttcaccg caagccacaa tccggctcgc
      121 tataacggca tcaaactttg ccgggccgct gctaccccgg ttggccagga cagcgggctg
      181 cgcgagatcc gggttgcggt cgagcgcggc atccagccag gaccgggcgg cggtgtcgtg
      241 accaagcggg acatgctcac cgactacgcg cgttacctgc gttcgctggt ggacttgtcc
      301 gaaatccggc cgatgcgcat cgtggtggat gccggtaacg gaatgggggg atacacggtg
      361 cctgcggttg tcgagggact gcccctgcat gtcatcccgc tttacttcga attagatggg
      421 aatttcccca atcacgaggc caacccgctg gatccggcca atctggtgga tctgcaggtt
      481 gccgtgcggg agcacggcgc cgatctgggt ctggccttcg atggcgatgc cgaccgctgt
      541 ttcgcgatcg acgaacgggg tgagccggtg agtcccagcg ctatcaccgc gctggtcgct
      601 acgcgggagc tggccaatga gcccggtgct acggtgatct acaacttgat cacttcccag
      661 gctgtgccgg agattgtcgc cgagcacggt gggcgtccgg tgcgtacccg ggtcgggcat
      721 tcattcatca agcagttgat ggccgaaact ggagcgatct tcggcggtga gcattccgcc
      781 cactactatt tccgcaattt ctggcgtgct gattccggga tgctcgccgc gctgcacgtg
      841 ctggccgcac tgggccacca gcatcgccca gcctcggcgt tgatggccga gttcagtcgc
      901 tacgccgcgt ccggtgagat caactccacc gttgaccacc cggaaggccg gatagccgcc
      961 gtgcgggcgc acttcgtggc ccaggacgac gtcgagctcg acgagctgga cggcctcacc
     1021 gtacggtgcc ccgacggttc gtggttcaac ctgcgcccgt cgaacaccga gccgctgctt
     1081 cgcctgaacg tcgaggcccg cacaattacc gcggtcgagg cgctgcggga cgaggtgctg
     1141 gcactggtgc gcgagtgagg tcaggaggac gagcatggcg gtgaagttgg atccgcaact
     1201 gagggagatc ctggcgtgcc catgctcggc gcatgcgccg ctgcgcgatg gcactgctgc
     1261 cgaccccgag gctgacgcct tgacctgcac agtatgtggg cgcagctttg cggtgaccga
     1321 cggaattccg gtgctgttgc ttgacgaggc gctgctcggg accggtccgg atgctaacgg
     1381 aacggatagc gacgagggcc gcgccagtgg gctgggccca cgctgatgcg acccggtcgg
     1441 gaattcgacg acgacttact cgatgaccct gggcgtcttg aggccaccga ctccggtgga
     1501 ctgctgcgcg ccgcggctac tgcgggtgcc caggtgcgct ccacagccgc cgtcgccgaa
     1561 gaggcaggcc tgggccggtt ggctgggcaa cggccacgag cgctggtcct gctgacccgg
     1621 ccgggtgccg cgccggccgc tgcaccgctg ctactcgcgc tgctgggacc gtcctgccca
     1681 gtgccggtgg tgacgacgcg atcggtgccg atgtgggtcg gtgcgctgga catcgtgctg
     1741 gccaacacga ccgatcccgg tgaccgggag ctggccgaag gactcgaccg ggcggtacgc
     1801 cggggagccc aggtagtgct cagcgctcct gccgacggtc cggtggccgc tgcagccgct
     1861 ggccgatcgg tgctgttgat ccccccgatc gaggtaccgc caggcctcac actgccccgc
     1921 aatctgaccg ctggtctgtt gctgctggac gctctggagc tactggcaac cgaccctgag
     1981 gtactggccg gtgagcttga ccgcgaagcc gagcgcgact acgtcgctca cgaggcgctg
     2041 gtcaacccgg cgaagtccct ggcgctgcgc ctgcgcgggc gcaccccatt gctctggggc
     2101 accgatccgg tggccaccgc ggtggcgggt cactgtgccg gggcgctggc agcgcacgcg
     2161 ggggtcgtgg cgcacgccgc gggattccat gaggcggccg cgctaccggt gctgcgccag
     2221 caggcatccc gcgccagtgg ggaggccgag atattccgtg accccttcga agacccgttc
     2281 gagggaaggt ccaaggaaca gtcccgcggt ggtatgccgg cgatgcggcc ggtgctgctg
     2341 ggagtgctcg ctgaggcccg ggacgtgcct gagcggatgg ctgcggtgga cgcgttgccg
     2401 ggtgccgacg tggtgacggc cgacgaggag ctgatggtgc gccagggtga cccgggtgcc
     2461 gccgcgtgcg ccgccgctgt actggcccta cggttcgact tcgccgcgct ctatctcggg
     2521 ttgagccaa
//
LOCUS       DASVXZ010000422         8625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1456847, whole genome shotgun sequence.
ACCESSION   DASVXZ010000422 DASVXZ010000000
VERSION     DASVXZ010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8625
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1456847"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1627)
                     /gene="glgB"
                     /locus_tag="VF788_08775"
     CDS             complement(<1..1627)
                     /gene="glgB"
                     /locus_tag="VF788_08775"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003844 - 1,4-alpha-glucan branching
                     enzyme activity [Evidence IEA];
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HEX8934269.1"
                     /translation="MTVQAADRATSAPPADELRRLLAGEHHDPHSVLGAHPQRAGTAV
                     RVLRPHADEVTVLSDDGEYPLEPGTGGLFHGMMPNPGDYRLRVRYGDHTEITDDPYRW
                     LPTLGEVDLHLFGEGRHERLWEVLGAHLRTYPTSGGLVVGTSFAVWAPHAQGVRVCGD
                     FDGWSGVATPLRSLGSSGVWEIFLPGVGAGTKYKFRLLGPDGSWHEKADPMARATEIP
                     PSTASLVAGPSTHEWNDAQWLAERAQGEPVAKPMSVYEIHLGSWRQDLDYRELAHQLV
                     DYLRTTGFTHVELMPVAEHPFGGSWGYQVTSYYAPTSRFGTPDDFRYFVDTLHAAGIG
                     VLMDWVPAHFPRDEWALARFDGAPCYEHSDPRRAAHPDWGTLIFDYGRNEVRNFLVAN
                     ALYWLEEFHLDGLRVDAVASMLYLDYSRQPGEWSPNAYGGRENLDAVAFLQEMNATVY
                     KRHPGVVTIAEESTAWPGVTRPTHVGGLGFGFKWNMGWMHDTLDYVGHDPVHRSYHHN
                     KLTFSLMYAWSENFVLPLSHDEVVHGKGSLWSRM"
     gene            1975..2634
                     /locus_tag="VF788_08780"
     CDS             1975..2634
                     /locus_tag="VF788_08780"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEX8934270.1"
                     /translation="MSPRVKICGIRSEADVKVAVRSGADAVGFICGVTHRSEDALTPE
                     HAAMLVAATPPYVSTVLVTHLELPEQITGLARLLGVDTIQIHGLVNRKTLREVFDRSS
                     GRWRITRAVHVTGDEAFGDALGIADCCHAVHLDSRTADRLGGTGRTHDWSISRKIVAA
                     LAPLSVPVILSGGLRPTNVADAVDATQPYAVDVNSGVEDQHGDKDLSRSLQFVDAVRQ
                     A"
     gene            complement(2654..4054)
                     /locus_tag="VF788_08785"
     CDS             complement(2654..4054)
                     /locus_tag="VF788_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase"
                     /protein_id="HEX8934271.1"
                     /translation="MISTANDLLADVAGSLVAVLPEQRWFAGKDRPVQAVIPIRATDL
                     GGTDPRLVHAVVEVDQGEPQRARYQLLLGVRRDLPETLGHAWVATTGDQVVYQAIHDP
                     ELTAVLLDLMAQGADVDGLRFAAEPGAELDTTQRSRPVGAEQSNTSLVYGQTYILKLF
                     RRVALGRSPDLELHRALAKVGCTHIAAPLGSIEGELESAPVTYGMLSEFLRNAADGWA
                     MATASVRDLLAESLLAEGTPGPVEHTDPADVGGDFASEARRLGQAVAAVHTDLATALG
                     SSPAPAGYFDTLADGMHRRLDDVLARVPELAPHEEPLRMAFDKVRGIGSSLPLQRVHG
                     DLHLGQVLRSVTGWVLIDFEGEPMVPLAERVVPSSTLRDIAGMLRSFDYAANHQPRGD
                     AEPEQAAALAWTTRNQDAFCDGYAQVAADPRMQPVLLRAFELDKAVYEVGYEHANRPA
                     WLPTPLAAITRLTGHS"
     gene            complement(4058..5854)
                     /gene="treS"
                     /locus_tag="VF788_08790"
     CDS             complement(4058..5854)
                     /gene="treS"
                     /locus_tag="VF788_08790"
                     /EC_number="5.4.99.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047471 - maltose
                     alpha-D-glucosyltransferase activity [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maltose alpha-D-glucosyltransferase"
                     /protein_id="HEX8934272.1"
                     /translation="MSSDLHTESNSELEGLPHTGEAVLTDGYLVEPQADDYEHATPAP
                     VDPHWYKRAVFYEVLVRAFHDHDGNGTGDLIGLTQKLDYLEWLGVDCLWLPPFYASPL
                     RDGGYDISDFRAVLPEFGTVEDFVVLLDEAHKRGIRVVTDLVMNHTSDQHPWFQESRR
                     EPEGPYGNFYVWSDKDTAYADARVIFVDTETSNWTHDPVRGQFYWHRFFAHQPDLNYE
                     NPAVGEAMIDVLRFWLDLGIDGFRLDAVPYLFEEEGTNCENLPRTHEFLKRCRKVIDD
                     EYPDRVLLAEANQWPADVVAYFGDPEVGGDECHMAFHFPLMPRIFMAVRRESRFPISE
                     ILAQTPAIPSGAQWGIFLRNHDELTLEMVTDEERDYMYSEYVKDPRMRANIGIRRRLA
                     PLLDNDRNQLELFTALLLSLPGSPVLYYGDEIGMGDNIWLGDRDGVRTPMQWTPDRNA
                     GFSGCDPGRIYLPVIMDPVYGYQAVNVEAQASASQSLLNWTRRMIQVRREHPAFGLGD
                     FIELGSSNPSVLAYLRNHTDDHGDDLVVCVNNMSRFPQPVELDLSEYEDGVPVELTGG
                     VRFPPIGELPYLLTLPGHGFYWFQIDLPTPGV"
     gene            6045..7028
                     /locus_tag="VF788_08795"
     CDS             6045..7028
                     /locus_tag="VF788_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5914 domain-containing protein"
                     /protein_id="HEX8934273.1"
                     /translation="MVGDRIPLRRLPAWTWAGQVPTWREAKPGLIEGALKRAQARPSG
                     NWYVLAASREVPADRPFGRTIAGVEVVAWRTPDGALHTGPGECPHLGAPLCRAAVTGG
                     NLVCRWHGLAIGARGVPGWDPFPAHDDGVLAWVRLDSAGGEDPLPVPVLPRRPDPEIS
                     MDAVFTGIGRCEPEDVVANRLDPWHGSWFHPYSFVGLRVIEEPTEEIDQFVIEVAFRL
                     TRRIGVPVRAAFSCPEPRTVVMEILEGEGAGSVVETHAVPLGVDDAGHPRTAVIEATI
                     ASSPRAGFAIARRGAPLMRPAMRWAAARLWRDDLAYAQRRYDLRTTGRWPG"
     gene            complement(7048..8544)
                     /locus_tag="VF788_08800"
     CDS             complement(7048..8544)
                     /locus_tag="VF788_08800"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX8934274.1"
                     /translation="MLHPARDGRPRPEGRPPEVAVVGGGIAGIAAAVALAERGVQVRL
                     LEREHQLGGRLRGWPTTLADGSSVTMSRGFHAFFRQYYNLRALLRRADPLGRALVPMA
                     DYPLVDAEGHRDTFQGLPRTPPWNALAFALLSPTFQWRDLITRIDPVAALPLVDVSVP
                     EVYHRLDDQDAMTFLERVRFPDAARHLAFSVFSRSFFADPRELSAAELATMFHIYFLG
                     SAEGLVFDVTAEPFPQALWEPMGEYLAELGVVLSTGVAVEQVAPGHERRFAVRVGGGS
                     SDVDAVVLATDVTGLQALLEASPELGEAPWRARIARLRSAPPFLVSRLWLDRPVRPDR
                     PGFLGTSGFGPLDNVSVLERFEGEAARWARRTGGSVVELHAYALTTDPEQAKRRLIAE
                     LNRVYPETAAATIVDERHELQADCPLFAPGTFGDRPTVSTPDPAVVLAGDLTRVNLPV
                     ALMERAATSGLLAANALLSSWGLRGHPLWTVPTRGRLAPLRAVAARFA"
BASE COUNT         1494 a         2790 c         2923 g         1418 t
ORIGIN      
        1 gcatccggct ccacagcgat cctttgccgt gcaccacctc atcgtgcgat agcggcagca
       61 cgaagttctc gctccacgca tacatgagcg aaaaggtcag cttgttgtga tggtagctac
      121 ggtgcaccgg atcatggccg acataatcaa gtgtgtcgtg catccacccc atgttccatt
      181 tgaagccgaa acccagtccc ccgacgtgtg tcgggcgggt gacacccggc caggccgtgg
      241 attcttcggc aatcgtcaca accccggggt gtcgcttata gacggtggca ttcatctcct
      301 gcagaaatgc gacagcgtcc aggttctcgc gcccaccgta ggcgttgggt gaccattcgc
      361 ccggctggcg cgagtagtcc aggtacagca tcgacgccac tgcgtccacc cggaggccgt
      421 cgagatgaaa ctcctcgagc cagtacagcg cattggcgac caggaagttg cggacctcgt
      481 tgcgcccgta gtcgaagatc agggttcccc agtccgggtg cgccgcgcgc cgcgggtcgg
      541 agtgctcgta gcagggagcg ccgtcgaagc gagccagcgc ccattcatca cgcgggaaat
      601 gcgcggggac ccagtccatg agtaccccga tcccagccgc atgcagggta tctacgaagt
      661 agcggaaatc gtcaggggtg ccgaatctcg aagtcggtgc gtagtaggag gtgacctggt
      721 agccccagga cccgccgaac ggatgctcgg cgaccggcat cagctcgaca tgggtgaacc
      781 cggtcgttcg gagatagtcg accagctggt gtgcgagttc ccgatagtcc aggtcctgcc
      841 tccaggagcc gaggtggatc tcgtagacac tcatcggctt ggccaccggc tcgccctgcg
      901 cccgctcggc gagccactgg gcatcgttcc attcatgggt cgacgggccg gcgaccagcg
      961 aggccgtgct cggggggatt tcggtggcac gagccatcgg gtcggccttc tcgtgccagc
     1021 tcccgtcggg gcccagcaga cggaatttgt acttggtacc ggcaccgacg ccgggcagaa
     1081 agatctccca caccccggag gagccgagag accgtagcgg ggtggccact ccggaccaac
     1141 cgtcgaagtc gccgcacacc cgcaccccct gagcgtgcgg cgcccacacc gcgaacgagg
     1201 ttcccacgac cagaccaccc gatgtgggat acgtccgcag gtgggcgccg agtacttccc
     1261 acagccgctc gtggcggccc tccccgaaca ggtgcaggtc gacctcgccc aaggtgggta
     1321 gccaccggta cgggtcatcg gtgatctcgg tgtggtcgcc gtagcgcacc cgcagccggt
     1381 agtcgcctgg attcggcatc atgccgtgga aaagtcctcc agtgcccggc tccagaggat
     1441 attcgccgtc gtcgctgagc accgtcacct catcggcgtg cgggcgcagc acccgcaccg
     1501 cggtgcccgc acgctgcggg tgcgccccga gcaccgaatg cgggtcatgg tgttcaccgg
     1561 ccagcagccg gcgcagctcg tcagccggtg gtgccgaagt agcgcggtct gccgcttgca
     1621 cggtcacatc ctttcctggt cttgtcttgc tcccagtgtg tcggctcgcg gccagatccg
     1681 ctgagtgggc aatgtcagtg atcctcatag tctgcctaga cagactatga ggatgcacct
     1741 gagatggcag cctccaggag gccaagcaac gcttcagtga ggggtcagca ccttcggtag
     1801 gtccgcgcgg gagcaactga gcacggtgcg gtgagccgga gacaccatga ccatcacgga
     1861 gaccaccgtg ggcacgacga ccaccggaga gcgcgcgggt ctgctcgaca cgctgagcat
     1921 ccgggagtcc ctggacggtt cccggagcat ggggtagccg agtacgcagt gagcatgagt
     1981 ccacgagtca agatttgcgg tatccgctcg gaagccgatg tgaaagtcgc ggttagatcc
     2041 ggcgccgatg ccgtcggctt catctgtgga gtcacccatc ggagcgagga tgctctcacg
     2101 ccggagcacg cggcgatgct ggtagcagct actccaccgt atgtctcgac cgtgttggtg
     2161 acccacttgg agctgcccga gcagatcacg gggctcgccc ggttgctggg tgtcgacacc
     2221 attcaaattc atggtctcgt gaacaggaaa accctccggg aagtgttcga tcgatcgagt
     2281 gggcgatggc gaatcacgcg agcagtgcac gttactggag acgaggcttt cggtgacgca
     2341 ctgggcatcg cggattgttg tcacgctgtg cacctggact ccaggacagc cgatcgcctt
     2401 ggcggtaccg gccgaaccca cgactggtcg atcagccgga agattgtagc tgcgctcgct
     2461 ccgctgagcg tgccggtgat cctctcggga gggctccgtc cgaccaacgt ggcggacgcc
     2521 gtcgacgcca cccaacccta tgccgtagac gtgaactcgg gcgtcgagga tcaacacggc
     2581 gacaaggacc tctcccgttc actccagttc gttgatgccg tccggcaggc gtgaccggcc
     2641 gaggcggcgg cggtcaggag tggccggtga ggcgggttat ggcagccagg ggggttggaa
     2701 gccaggctgg gcggttggcg tgttcgtagc cgacctcgta gacagctttg tccagctcga
     2761 aggcgcggag caggacgggc tgcatgcggg gatctgccgc gacctgcgcg tagccatcgc
     2821 agaacgcgtc ctggttgcgg gtggtccagg cgagtgccgc cgcctgctcg ggttcggcgt
     2881 cgccgcgcgg ctggtgattg gcggcgtagt cgaatgagcg cagcatcccg gcgatgtccc
     2941 gcagcgttga ggagggcacg acacgctctg cgagcggcac catgggctcg ccctcgaagt
     3001 cgatcagaac ccagccggtg acgctgcgca gtacctggcc gagatgcagg tcgccgtgca
     3061 cccgctgcag cggcaacgag ctgccgatac cgcgcacctt atcgaacgcc atccgaagcg
     3121 gctcctcatg cggtgcgagc tccggaaccc gagccagcac gtcatccaac ctgcggtgca
     3181 taccgtcagc cagggtgtcg aagtatccgg ctggagccgg ggagctaccc aaagcggtgg
     3241 ccaggtcggt gtgcacggca gctaccgcct gacccagtcg gcgtgcctcg gaggcgaagt
     3301 caccgccgac gtccgcggga tcggtgtgct ccaccggacc gggcgtgccc tcggctagca
     3361 ggctctccgc cagcaggtcc cgcacgctcg cggtggccat cgcccagcca tcggccgcgt
     3421 ttcgcaggaa ttcgctgagc atcccgtagg tcacgggagc ggattccagc tcaccctcga
     3481 tactgcccag tggcgccgcg atgtgcgtgc aacccacctt ggccaacgcg cggtgcagct
     3541 ccagatccgg gctgcggcct aaagccaccc tacggaacag cttgagaatg taggtctgcc
     3601 cgtacaccag ggaggtgttg gactgttccg ccccgaccgg gcgggagcgc tgcgtggtgt
     3661 ccagctcggc acctggctcg gcggcgaagc ggagcccgtc cacgtccgcg ccctgcgcca
     3721 tcaggtccag caggacggcg gtgagttcag gatcgtgtat cgcctggtac accacctgat
     3781 cgccggttgt ggccacccag gcgtgcccca gcgtctcagg caggtcacgg cgcactccga
     3841 gcaggagttg gtagcgggct cgctgcggct cgccctggtc cacctcgacg acggcgtgca
     3901 ctagccgggg atccgtacct cccagatcgg tggcgcgaat cgggatcacc gcctgcacgg
     3961 gacggtcctt gccggcgaac cagcgttgct cgggcagcac agccaccagc gagccggcga
     4021 cgtcggcgag taggtcatta gcagtactga tcacgggtca cactcccggt gtcggaaggt
     4081 cgatctggaa ccagtagaag ccgtgcccag gaagggtgag caggtaaggc agctcgccga
     4141 ttggcggaaa ccgcacgcca ccggtcagct cgaccggaac gccgtcctca tactcagaca
     4201 ggtcaagctc caccggctgc gggaagcggg acatgttgtt cacacagacg acgagatcat
     4261 caccgtggtc gtcggtatga ttgcgaaggt aggccagcac gctggggttg gaggaaccca
     4321 gctcgatgaa atcacccagc ccgaacgccg ggtgctcgcg gcgcacctgg atcattcgcc
     4381 gggtccagtt cagcagcgac tgtgatgcgc tcgcctgcgc ctcgacgttg actgcctggt
     4441 agccgtagac cgggtccatg atcaccggta gatagatgcg gccggggtca cagccggaga
     4501 atccggcgtt gcggtccggg gtccactgca tcggcgtgcg tactccatcc cgatcgccca
     4561 gccagatgtt gtcccccatc ccgatctcgt cgccgtagta gagcaccggg gagccgggta
     4621 gtgacagcag cagcgccgtg aacaattcca actgattgcg gtcattgtcc agcagcggcg
     4681 ccagccggcg gcgaatgccg atgttggccc gcatccgagg atccttgacg tactcgctgt
     4741 acatgtagtc gcgctcttcg tcggtgacca tctccagggt cagctcatcg tgattgcgca
     4801 ggaagatccc ccactgggcg ccggagggga tagctggcgt ctgggccagg atctccgaga
     4861 tcgggaaccg ggactcccgg cggactgcca tgaagatgcg gggcatcagt gggaaatgaa
     4921 acgccatatg acattcgtca ccaccgacct cggggtcgcc gaagtacgcc acgacgtccg
     4981 caggccattg attggcctcc gccagcagca cacggtcggg gtactcgtca tcgatcacct
     5041 tccggcaacg cttgagaaat tcatgagtgc gcggcaagtt ctcgcagttg gttccctctt
     5101 cctcgaaaag gtagggcacc gcgtccagcc ggaagccgtc gatacccaga tccagccaga
     5161 accgcaacac gtcgatcatc gcctcgccga ccgcagggtt ctcgtaattg aggtcgggtt
     5221 ggtgggcgaa gaagcggtgc cagtagaact gcccgcgcac cgggtcatgg gtccagttcg
     5281 acgtctcagt gtcgacgaag atgacccggg cgtccgcata ggcggtgtct ttgtcactcc
     5341 aaacatagaa gttgccgtaa gggccttccg gctcgcggcg ggattcctgg aaccaaggat
     5401 gctgatcgga cgtgtggttc atgaccaggt cggtgaccac tcgaataccc cgcttatgcg
     5461 cctcatcgag cagtaccacg aaatcctcga ccgtgccgaa ttcaggtaat acagccctga
     5521 agtcggatat gtcgtaacca ccgtcacgta acggggaggc gtagaagggg ggcaaccaca
     5581 ggcagtcaac gcccagccac tccaggtaat cgagcttctg cgtcagccct atcaggtcgc
     5641 cagtgccatt cccgtcgtgg tcatgaaagg ctcgaactag tacctcgtag aagacggccc
     5701 gtttgtacca gtgcgggtcg acgggtgcag gggtggcgtg ctcgtagtcg tcggcctgtg
     5761 gttccaccag gtaaccgtcg gttaacacag cttcaccggt gtggggaagg ccttcgagct
     5821 cggagttgga ctcggtgtgt aggtcggatg acatcagtgc gcgactccat gggtgggttg
     5881 ctgcacgggc caggaggggc tcaactgtgg cggcctcacc agtcctaccg ccccgaccct
     5941 cctagcgcaa aggagaggta ccgtcctgag cccgaacccg ccaaatggaa ccgattgggg
     6001 ggtcggctgc gaacggcggg cgtgagcgga agggatgcgt gacgatggtg ggtgatcgga
     6061 tcccgttgcg gcggctgccg gcgtggacgt gggcgggcca ggttcctacc tggcgggagg
     6121 ccaaacccgg gctgatcgag ggagcgctga aacgggcgca agcccggccg tcgggcaact
     6181 ggtacgtgct cgccgcgagc cgggaggtcc ctgctgatcg gcccttcggc cgcaccattg
     6241 cgggtgtcga ggtggtggcc tggcgcaccc ctgatggtgc actgcatacc ggtcccggcg
     6301 agtgcccgca cctaggcgca ccactgtgcc gcgcagcggt gaccgggggg aacctggtgt
     6361 gccgctggca cggtctggca atcggagccc ggggggtgcc gggatgggac ccgttcccgg
     6421 cccatgacga tggggtgctg gcctgggtac ggctcgactc tgccggtggg gaggatccgt
     6481 tgcccgtgcc ggtgctgcct cgccggccgg acccggagat cagcatggac gcggtgttca
     6541 ccggtatcgg gcgttgcgag ccagaggacg tggtcgccaa ccggcttgac ccgtggcatg
     6601 gcagctggtt tcacccgtat tcgttcgtcg ggctgcgggt gatcgaggaa ccgaccgagg
     6661 agatcgatca gttcgtgatc gaggtggcgt tccggctcac ccggcggatc ggggttccgg
     6721 tgcgggccgc gttcagctgt ccggaaccgc ggacggtggt gatggaaatc ctcgaaggcg
     6781 agggcgccgg cagcgtcgtc gagacgcacg ccgtcccact gggcgtcgac gatgccggtc
     6841 atccccgcac cgcggtgatc gaggcgacca tcgccagctc acctcgggcc ggcttcgcca
     6901 tcgcccgccg cggagcgccg ctgatgcgtc cggcgatgcg ctgggcagcg gctcgtctgt
     6961 ggcgtgacga cctcgcctac gcgcaacgcc gctacgacct ccgtaccacc ggccgctggc
     7021 caggctgaac cggtgttcct tgaatcttca ggcgaagcga gcagcgacgg cgcgcagcgg
     7081 cgctagccga ccccgggtcg ggactgtcca taacggatga ccacgcagac cccagctgga
     7141 cagtagcgcg ttggcggcga gcagcccgct ggtcgccgcg cgttccatca atgccacggg
     7201 gaggttgacc ctggtgaggt caccggcaag aaccacggcg ggatcggggg tgctgacggt
     7261 gggccggtca ccgaaggttc ccggcgcgaa cagcgggcag tcggcctgca actcgtggcg
     7321 ttcgtcgacg atcgtggcgg cggcggtctc cgggtagacc cggttgagtt ctgcgatgag
     7381 gcggcgcttt gcttgctccg gatctgtggt gagcgcgtag gcatgcagtt ccaccacgga
     7441 accgccggtg cggcgggccc agcgggccgc ttcgccctcg aagcgctcca gaacgctgac
     7501 gttgtccagc gggccgaacc cgctggtacc gaggaagcca ggccggtccg gccgcaccgg
     7561 ccggtccagc cacaatcggg acaccagaaa cggcggggcg ctgcgcaatc gtgcgatgcg
     7621 tgcccgccag ggcgcttcgc cgagctcggg tgatgcctcg agcagcgcct gcaacccggt
     7681 gacatcggtg gcgagcacca cggcgtcaac gtcggagctg ccgcccccca ctcggaccgc
     7741 gaatcggcgc tcgtgcccag gtgccacctg ttcgacggct acgccggtgc tgagcaccac
     7801 accaagttcg gccaggtact cgcccatcgg ctcccacagc gcctgcggga acggttccgc
     7861 ggtcacgtcg aacaccaggc cctcggccga gcccagaaaa tagatgtgga acatcgtggc
     7921 cagttcggcc gccgacagct ccctgggatc ggcgaagaag ctacgggaga acaccgagaa
     7981 cgccaggtgc cgagcagcgt ccgggaagcg cacccgctcc aggaacgtca tcgcgtcctg
     8041 gtcgtccaac cggtggtaga cctccgggac cgacacgtcc accagaggga gcgcggccac
     8101 cgggtcgatc cgggtgatca ggtcccgcca ctggaaggtg gggctcagca gtgcaaaggc
     8161 caatgcgttc cacggtggcg tgcgcggcag accctgaaag gtgtcccgat ggccctcggc
     8221 atcgaccagc gggtagtcgg ccataggcac caacgcccga cccagcggat cggcccgtcg
     8281 tagcagcgct cgtaggttgt agtactgccg gaagaaagcg tggaagccgc ggctcatggt
     8341 gaccgatgac ccgtcggcca gcgtggttgg ccaaccgcgc aggcggccgc cgagctggtg
     8401 ctcccgctcg agtagccgca cctgcacgcc gcgttcagcc agcgctaccg ctgccgcgat
     8461 gccggcgatt ccaccgccga ccacggcgac ttcgggaggc cgtccctccg gtcggggccg
     8521 accatcccgc gccgggtgca gcaccgcccg ccggtcccgg cccggccgat gcccaccacc
     8581 gttgagcggc gtcactgggg cttcctcgcg acgacggtgt gcacg
//
LOCUS       DASVXZ010000423         1534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_404150, whole genome shotgun sequence.
ACCESSION   DASVXZ010000423 DASVXZ010000000
VERSION     DASVXZ010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404150"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(570..640)
                     /locus_tag="VF788_08805"
     tRNA            complement(570..640)
                     /locus_tag="VF788_08805"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(606..608),aa:Gln,seq:ttg)
     gene            924..>1534
                     /locus_tag="VF788_08810"
     CDS             924..>1534
                     /locus_tag="VF788_08810"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007028785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HEX8934275.1"
                     /translation="MTMTADADRQGTEPEPVLSGQRTWGPQILVYIFVVAPMLALMVA
                     VPVAWGWGLGWVDIVLFVVTYFVSLLGVTVGYHRHFTHGSFKAKRWLRVCLAVLGSTA
                     MQGPLLHWVADHRRHHAYSDKEGDPHSPWLFGTSPLAVARGFWHAHMGWLFNRDLSNP
                     RRFVPDLLADKTMVRVSKLFWLWTGIWLVLPGIIGGLVTWSWWA"
BASE COUNT          256 a          474 c          504 g          300 t
ORIGIN      
        1 tcgtggacgg tgcggatgac cggcaggaac gaatatcagg tcggaccagc agcgccagta
       61 tcgcgcccgt cggcggacag catccccaca tcgctgcggg acctgtgagc cgaagagtca
      121 ccgctcgcgg cgcattatca ccctgccgag aggcgcgcgc catcgcgaga tttgctgcgg
      181 tccgtgccga cgtcagccag cggcagccgc tcccgtgcca gccttcagac tggatcttta
      241 ctactgagac cggttgaccg agcggccctc gcagcattaa caaggccttc gcgcggctcc
      301 tcgagcgggc cgcgatcaac ccgtctcggg ttcacgacct caggcacagg tgtgcgagct
      361 tgctgctgct cgacggcgcc tctgacaggg agagcatgga gctgcttggt cgtagctcga
      421 cccacatcat gatgaacatc tacgcccacg tgctcgagga gtccaaacgc cggttggcgg
      481 cacgcatggc agcttgctca gcgactagtg atgtcaactg cggatgtcaa cgagggggtg
      541 gtgatcttag cactgcccct gagcagctgc tccgccgcca ggattcgaac ctggaccatc
      601 ggaaccaaaa tccgaggtgc tgcctttaca ctacggcgga tgagcgggcc gagacccacg
      661 ggcacatggt gacatgagtg gtctgtttgg ctcagcgcag cccctcacca gaatgcagcc
      721 gcgcgggatc gatcccccgt gacgacacgc ccgacaagcc gccacaagcg tagtaggtcg
      781 tgactgcatc gggctcaata atctacggtt cagctaataa tgccgcgcgc gccacctgtg
      841 gtttcgctac agatgggagc atgtcggcat ctagctgcgg cgtggcggct gtccgcgtct
      901 gccgacgtga ggagtaccgg ccgatgacga tgaccgccga cgctgaccgc cagggtacgg
      961 agcccgagcc ggtcctttca ggtcaacgga cttggggacc gcagatcttg gtgtacatct
     1021 tcgtcgtcgc gcccatgctt gccctgatgg tcgcggtgcc ggtcgcctgg ggctgggggc
     1081 tcggctgggt ggacattgtg ctgttcgtcg tcacgtactt cgtcagtctc cttggggtga
     1141 ctgtcggtta ccaccgccac ttcacgcacg gatcgttcaa agcgaagcgg tggttgcggg
     1201 tgtgcctggc ggtgttgggt agcactgcca tgcaggggcc gctgcttcat tgggtggccg
     1261 accaccgacg gcatcacgca tactccgata aggaaggcga cccgcattcg ccgtggttgt
     1321 tcggtacttc cccgctcgcg gttgccaggg gtttctggca tgcccacatg ggctggttgt
     1381 tcaaccggga cctgtccaat ccgcgccggt tcgtccctga cctgctggcc gacaagacga
     1441 tggttcgggt cagcaagctg ttctggctct ggaccgggat ctggctggtg ctgccgggga
     1501 tcatcggggg gctggtgacc tggtcctggt gggc
//
LOCUS       DASVXZ010000424         2207 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_493411, whole genome shotgun sequence.
ACCESSION   DASVXZ010000424 DASVXZ010000000
VERSION     DASVXZ010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493411"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1100..1693)
                     /locus_tag="VF788_08815"
     CDS             complement(1100..1693)
                     /locus_tag="VF788_08815"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEX8934276.1"
                     /translation="MFDGATQYIEVPDHDALSVPATGILSIEAWMRPDVLDFPHQEGT
                     NYVHWMGKGEVNRYEYAARMYSRTTTDDPPRPNRISGYAFNLSGDKGTGSYFQDNIIA
                     GQWIHYMLIINTVDTDESHPTGYTRIYKNGCARDQDALTSFGTVPGSGTAPFRIATRD
                     FESFFLGAIAKVAIYDYELSPTAVRSHYQAVVPSGAK"
BASE COUNT          430 a          699 c          643 g          435 t
ORIGIN      
        1 gacggcgaaa tccgggcgtt ggccaaaggg accgcgtgag cagggtagga cccagcagga
       61 cgcgtgatcg ccggggtcat gactcccacc catcgtggtg gcgtggtcgc ccccttgatt
      121 gatcccgccc tgctggagcc gcaccgcctc atgccgcgct cccagcggcg aagggatgac
      181 cggcagccga acccctcggc ccgcctgaac tgatcttcgg caaaccatga ggacggaacc
      241 gacaactaca catcaccggt actgttcgcc cgctcccggc tggatcagta ttgcgccatc
      301 ctcgccggcc tccaggccgt tcgtcctcgc tgcgctgcgg gcgctgcgcc tggaccccgg
      361 ctgcggctgc cgcacgcccc aaacacgccg gaaacgacca gaaaaacggt cacaacgacc
      421 acgaccccgc cttgaccaat tccgccgctt cagggatgac ccccaggacg taggagtagg
      481 catcttccca ggtcaaattg ggtgcagacg ccctgtgcac gggtgatcca cgtgcgggtt
      541 gttcacatcc gtgcaggacg tgtggtcccc aaatggtccc cagcaggaca ctccgcctac
      601 tcccctgcct ccctctcttc cgggtcgcca atcttgccgc cgatggttcg ctgacgatga
      661 tggccggagg gacgggcttc gagggactgg tgatcctgtg attaacagat gcaggcaagt
      721 ccgggatcgg gctgcgcgac gtgggcatgc agtgtttgct gggtggtgtc cgggtgcagc
      781 acagtgctgc tcgttgcggt cagaactgcg gtcatctggt ggcagcgggg tgccttgcgt
      841 gatgaccgag gcgggagcgc gcttggcctc ccaggaacac gcaacccttc tctccggcct
      901 tcaatctgcg ccgcgatttc gcttggcggt gtgctggttg tgcccagttg tcgtctgcgt
      961 tgtcgtcagc tcgcgcccag gaagcgagaa tcgtctccag ggccatgtca taacaatgtt
     1021 tagtcaccgt aactaataga atcagctgac gggctccggc ctcgccgtga ccttcaccca
     1081 acggtgatac ccgcaagccc tatttcgccc cggaaggaac gacagcctga tagtggctac
     1141 gcaccgctgt tggcgacagt tcatagtcat atatcgctac tttggcgatg gcgccgagga
     1201 aaaacgattc gaaatcacgt gtggcgatac ggaagggtgc cgtgccgcta cctggcaccg
     1261 tgccaaaaga tgtcagcgcg tcctggtcac gcgcacaacc gttcttgtaa attcttgtat
     1321 acccagtggg gtggctctca tcggtgtcca ccgtgttaat gatcagcata tagtgaatcc
     1381 actggccggc gatgatgtta tcctgaaagt agctaccggt ccccttatca ccgctcaaat
     1441 tgaaagcgta acccgagatg cgattgggac gcggagggtc gtcggtcgtc gtgcgggagt
     1501 acatccgagc ggcgtactcg tatcgattca cctctccctt gcccatccaa tggacgtaat
     1561 tagtcccttc ctggtgtgga aaatcgagaa catcgggacg catccaagcc tcgatgctca
     1621 agataccggt agccggcacg ctcagtgcat catggtcggg aacttcgatg tactgtgtgg
     1681 caccatcgaa caccgtcgcc ggatcaccgt tgacaaacct ggttacgcgt tgcccgccgt
     1741 gtgcccgccc agtatgacca tggccggtct gatcagcgac gcccgcacgg tcaccgccca
     1801 gagtccaaaa agcaaccggg ctatcaccaa ggatggcagt gtcgtagctc gatctaacgc
     1861 tcgcagcagc gtgtcgtgat ggcagttggc catcatcccc actccgtggc gacgaagctg
     1921 ccatcccatg cgccacctgt gggtggctaa caaggttgtc ctcgtcaggg gacctgtggg
     1981 tattcatggg ttgccctctc accgatcatg gcagacaccg cgcacatcgc cgaccacggt
     2041 gcgcgccttc tcaaaagaag aggcctagcc cgccgaacgg aatacatacc cacgggatct
     2101 ttttgatccc cgcgggaacc cactcaagat ccgctgttgt gtcaccacgc gccggtttaa
     2161 tcaccccagc gctcaagctc gctccatggg tagggaagca cgtaaag
//
LOCUS       DASVXZ010000425         1612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_225332, whole genome shotgun sequence.
ACCESSION   DASVXZ010000425 DASVXZ010000000
VERSION     DASVXZ010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225332"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VF788_08820"
     CDS             <1..282
                     /locus_tag="VF788_08820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934277.1"
                     /translation="HRLAQQRLNIGNVEGKVRRVDLHDQTATPEPLHRERQLTPGYQD
                     QMQSIRRSPAQSFEDPRGVAVRPQPMQIIKNNNEVLAQATAQPETDGCH"
     gene            1022..1384
                     /locus_tag="VF788_08825"
     CDS             1022..1384
                     /locus_tag="VF788_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673709.1"
                     /note="This anti-anti-sigma factor, or anti-sigma factor
                     antagonist, belongs to a family that includes
                     characterized members SpoIIAA, RsbV, RsfA, and RsfB;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0045152 - antisigma factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HEX8934278.1"
                     /translation="MSNDFSAEIMGLQVVEHGADARVVTVTGEVDSLTAPELATFLTA
                     QLTAVRLVVVDLDGVEFLGSAGLAVLFEANELAIQQDRNLRLVCHSRIVNRAMDATEL
                     RQHFSFADTVEEAVKDLP"
BASE COUNT          322 a          528 c          490 g          272 t
ORIGIN      
        1 caccgtcttg cccaacagcg cctcaacatc ggcaacgtcg aaggcaaggt ccggcgcgtg
       61 gatctccatg accagaccgc gaccccggag ccgctgcaca gagaacggca gctcacaccg
      121 ggatatcaag atcagatgca gtcgatccgg cgctcgccgg cacagagttt cgaggacccg
      181 cgcggcgtcg ctgtccggcc gcagcccatg cagatcatca agaacaacaa cgaggtcctt
      241 gctcaggcaa ccgcgcaacc agaaacagat ggctgccatt gaggaccccc cctggtccgc
      301 tgcagcgata acctcggtcg gcgctggcac cgatatgcga gtccgaaatg cctcgaccag
      361 gccagccacc agccgatccg catcaccttc atgatcctca taccgcaccc acgcgaccga
      421 acaaccccgc gaccaggtcg ccacggccgt ggtcttcccc cagccggccg caccgaccac
      481 aacacagatg cggcgcttca ccgcgcggtc cagaagttcg tcaattgacg ggcgatcgat
      541 tcgctcttca gccggtgccg ataggtccgg ctcagcaaac aggcccaaaa tctgtcgcct
      601 ccagcactct cacgcgttcg cagagaaacc gcaatcgagc ctggaggctc agccgaactc
      661 ccgtttccgc agcgtcgcaa ccaggccatt cacggcgaat ccggactttc gaggctggcc
      721 cgaacctggt cgcgagtcgt catctccaca gcccatcttc tccgtacttc agattatgta
      781 gtggcgctac ataatctgaa gtagcggtca cgcggtcgtt tcgcagggtt gggtcggagt
      841 cgccgggaag ccgtcgatat gtgagcgccc gggcggcagg cgaccgatgg gtccagacca
      901 cctccatgac caccaggcag ccgtttcggg acggtcaggt gctcacaagc tgattccgcc
      961 ggggagctca cagccccagc gtgctgatag cccgctggga gctgcgttat atgttgcggc
     1021 tgtgagcaac gacttctccg cggagattat ggggctgcag gtggtagagc acggtgctga
     1081 tgcgcgtgtg gtaaccgtga caggggaggt cgactcgttg accgcgccgg aactggccac
     1141 gttcctgacc gcacagctaa ccgcggtccg actggtagta gtagatcttg atggtgtgga
     1201 gttcctggga tccgcggggc tggccgtgct gttcgaggcc aacgaactcg ccatccagca
     1261 agaccgcaac ctgcggctgg tatgccattc ccgaatcgtc aaccgggcca tggacgccac
     1321 tgaactgcgg caacacttca gcttcgccga caccgtggaa gaggctgtga aggacttacc
     1381 ctgaccgcgg caggacctgc tctgtacgag ggatcgggcg tgggttgccc accggggtgc
     1441 cgtggtttgg gacgctgcac aatcgggaaa tcccgccaaa cgaggttgca ccacagtagg
     1501 cgttgcacac agtaggcgaa gagagttgtg gcggatggtg ggcacctcgg gctgcggccg
     1561 ggggttagct caccacgggt tgctccaccc cccgtcagca gacctgaccg cc
//
LOCUS       DASVXZ010000426         1811 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_314384, whole genome shotgun sequence.
ACCESSION   DASVXZ010000426 DASVXZ010000000
VERSION     DASVXZ010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314384"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1711
                     /gene="uvrC"
                     /locus_tag="VF788_08830"
     CDS             <1..1711
                     /gene="uvrC"
                     /locus_tag="VF788_08830"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007029657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEX8934279.1"
                     /translation="VRYRDDKSYPVLAVMLNEEFPRLHVYRGPRRRGVRYFGPYAHAW
                     AIRETLDLLTRVFPARVCSAGVFKRHGQIGRPCLLGYIDKCSAPCVGNVTADGHRAIV
                     EDFCDFLSGRTDKMIRRLEREMEAAAAELQFERAARLRDHLGALRRAMEKQAVVLGDG
                     TDADVIAFACDELEAAVQVFHVRGGRVRGQRGWVIERVEQVDLVGQFLTQFYGEQAAL
                     AGSADDATQPVPREVLVPELPEDAEALSEWLSGLRGSRVALRVPQRGDKRALAETVAR
                     NAGEAFAQHKLRRAGDLTARAAALQEIREYLGLDTAPLRIECIDVSHVQGNDVVASLV
                     VFEDGLPRKSDYRRFAIRDAAGGGHSDDVASIAEVVRRRFTRYLRETEPSERPGLDPD
                     TGRPRKFAYPPNLLVVDGGPAQVAAAAEALFELGVTDVAIAGLAKRLEEVWLPGEADP
                     VILPRTSEGLYLLQRVRDEAHRFAISYHRQKRSARMTSSALDDVAGLGQVRRTALLKH
                     FGSVRRIRQASVDELTEVPGVGPSTARAVLAVLGPGENMDPGENMDPDENMGAGQTNG
                     AGS"
     gene            1717..>1811
                     /locus_tag="VF788_08835"
     CDS             1717..>1811
                     /locus_tag="VF788_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEX8934280.1"
                     /translation="MHLVQGGIEVAVVSGLSGAGRSTAAKVLEDLG"
BASE COUNT          286 a          568 c          655 g          302 t
ORIGIN      
        1 cgtccggtac cgcgatgaca aatcctatcc ggtgctggca gtcatgctga acgaagaatt
       61 tccgcggtta cacgtttatc gtgggcctcg ccgtcgcggg gtgcgttact tcgggcccta
      121 cgcccacgcc tgggcgatcc gtgaaactct cgacctgctc accagggtgt tcccggcccg
      181 ggtgtgttcg gcaggcgtgt tcaagcggca tggccagatc ggtcggccat gcctgctggg
      241 atacatcgac aaatgctcgg cgccgtgtgt cggaaatgtc accgctgatg ggcaccgcgc
      301 cattgtcgag gatttttgcg acttcctgtc cggccgaacc gataaaatga tccgccggtt
      361 ggagcgggag atggaggcgg ctgctgccga gctacagttt gaacgggccg cgcggctgcg
      421 cgaccacctc ggggccctgc gccgtgcgat ggagaagcag gcggtggtcc tcggtgacgg
      481 cacagatgcg gacgtgatcg cctttgcctg cgacgagctc gaggcggctg tacaggtgtt
      541 ccacgtccgt ggtgggcggg tccgcggcca gcgcggctgg gtgatcgagc gcgtcgagca
      601 ggtcgatctg gtcggccagt tcctgaccca gttctacggc gagcaggccg cgctggcggg
      661 atctgctgat gatgccaccc agccggtgcc ccgggaggtg ctggtccctg agctacccga
      721 ggacgccgag gcgctgagcg aatggctgtc cgggctgcgc ggctcgcggg tggccttgcg
      781 ggtaccacag cggggggaca agcgggcgct ggccgagacc gtggcgcgca acgccggaga
      841 ggcctttgcg cagcacaaac tgcgccgggc cggcgacctg accgcccgcg ccgcagcatt
      901 gcaggagatt cgcgagtacc tgggcttgga tactgcccca ctacgtatcg aatgcatcga
      961 cgtcagccac gtgcaaggaa acgatgtggt ggcctcgctg gtcgtcttcg aggacgggtt
     1021 gccccgcaag tcggactacc ggcgcttcgc gatccgcgac gccgcaggcg ggggtcactc
     1081 cgatgacgtg gccagcatcg ccgaggtggt ccgccgccgc ttcacccgct acctgcgaga
     1141 aactgagccg tccgaaaggc cgggcttgga tcccgacacg gggcgtcccc gtaaattcgc
     1201 ctacccgccg aacctgctcg ttgtcgatgg cggccccgcg caggtcgctg ccgcagcgga
     1261 ggcactgttc gagctcgggg taaccgacgt ggccatcgct ggattggcca agcgcctgga
     1321 ggaggtctgg ctgcccggtg aggccgatcc ggtgatcctg ccccgcacca gcgaagggct
     1381 gtacctattg cagcgggtgc gcgacgaggc gcaccggttc gcgatcagct accacaggca
     1441 gaagcgatcg gcccggatga ccagctccgc gttggacgac gtcgccgggc tggggcaggt
     1501 ccggcgcacc gctctgctca agcacttcgg ctcggtgcgc cggatccggc aggccagcgt
     1561 ggatgagctc acggaggttc ccggggtcgg gccgagcact gcgcgtgcgg tgctcgccgt
     1621 tctcggcccc ggcgagaaca tggaccccgg cgagaacatg gaccccgacg agaacatggg
     1681 cgctggacag accaacggag cgggatcgtg acggggattc acctggtgca aggcggtatc
     1741 gaggttgctg tggtttccgg gttgtccgga gccggccgaa gcacggcagc caaggtattg
     1801 gaggacctgg g
//
LOCUS       DASVXZ010000427         1666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_852720, whole genome shotgun sequence.
ACCESSION   DASVXZ010000427 DASVXZ010000000
VERSION     DASVXZ010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852720"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..>1666)
                     /locus_tag="VF788_08840"
     CDS             complement(156..>1666)
                     /locus_tag="VF788_08840"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX8934281.1"
                     /translation="LDLPELSTTERIAALRELGEARSNIGHVERATACYEAAVELAEQ
                     DHPALAVGALLGLLFQHQKLFGPRAALPWAARAAELATVCGVMQASAQAAWGAIAYRC
                     GDPEGLARAADAATRVDVVPTGWLLHQHRYRRPALSYATVAVQAEEFDDAEKLLTEIL
                     SSAECRSEPVTLLRAAMAWIEGLCRLGRLNEALNLSDRLTELTELIPPYTSQFAKLYR
                     ALVLLEQGQLEHAALCCAQLARIIHHPRYNLHRADGLELYVRALLAYRQGNTHTACSF
                     FTQLQQWAQRTGEADPSYLPWAADGVTAYLACGRLTDAQHLIDWVAQQAPAFPTRWPK
                     IALATSQAALAEHTGDRPVAETYFTHALKLHDELPMPLARASTLTHYGAFLTRGGEST
                     RARALLTEALHIADTCAAGWHAHRARVEWRRAGGRTRSRKPDELSPPETSVAQLAQAG
                     QTNREIAQQLHISVKTVETHLSHIYRKLGIRSRWQLTQHDTNIPINLPLDLE"
BASE COUNT          295 a          485 c          551 g          335 t
ORIGIN      
        1 ggcggtgtct gtccgaacct acgggccaag tccacaatcc gatattcggg ccacaggacc
       61 taaccaccac ccagaacttc agggcgcggg agtcgaccgg gcaccgccgg tcaacacccg
      121 tttgttgtga taagccgcaa caggttcgga ttttgtcact ctaagtcaag aggaaggtta
      181 atcgggatgt ttgtgtcgtg ttgggtgagt tgccagcggc tgcgaatacc aagtttgcga
      241 tagatgtgac tgaggtgtgt ttccactgtc ttgaccgaga tgtggagttg ttgggcgatc
      301 tcccggttgg tttggcccgc ctgagcgagc tgagcgacgg aggtctccgg ggggctgagt
      361 tcgtcgggtt tacgtgagcg agttcgtccg ccggctcgcc gccattcaac tcgcgcgcgg
      421 tgggcgtgcc aaccagctgc gcatgtatca gcgatatgta gcgcctcggt gagcaacgcc
      481 cgcgctctgg tgctttcccc accacgggta agaaaggcgc cgtagtgggt tagtgtactg
      541 gctcgggcca acggcatggg caactcgtca tggagtttca gtgcgtgggt gaagtaagtc
      601 tcggccactg gtcggtcgcc ggtatgctcg gctagggcag cctgactggt ggccagggcg
      661 atttttggcc atcgggtggg aaaagccggg gcttgctgcg cgacccagtc gatgaggtgc
      721 tgggcgtcgg tgagtcggcc gcaagcgagg taggcagtta ccccgtcagc cgcccatggc
      781 agatacgatg ggtcggcctc gccggtgcgc tgtgcccatt gctgaagttg agtgaagaag
      841 gagcaggcgg tgtgggtgtt tccttggcgg tatgccagca gcgcccgaac gtacaattcc
      901 agtccatcgg cgcgatgcag gttgtagcga ggatggtgaa tgatcctcgc cagctgcgcg
      961 cagcacaatg ctgcgtgctc tagttgtcct tgctccagca gcactaacgc tcgataaagt
     1021 ttagcgaact gggatgtgta gggcgggatc agttcggtga gctcggtgag gcgatcggaa
     1081 aggttcagcg cctcgttcag ccggcctagc cggcacagcc cctcgatcca cgccatcgcc
     1141 gcccgaagaa gagtaactgg ttcacttcgg cattcggctg aactaaggat ttcggtgagc
     1201 agcttttccg cgtcgtcaaa ctcctccgct tgcacggcca ccgtagcgta actgagtgca
     1261 ggacgccggt atctgtgctg gtgcagcaac cacccggtgg ggaccacatc cacccgtgtc
     1321 gcggcatcgg ctgctctggc cagcccctcc gggtcaccac agcgataagc gatcgcgccc
     1381 cacgccgcct gggccgaagc ctgcatgacc ccgcagacag tggccagctc ggcggcccgg
     1441 gcagcccatg gcaatgccgc tcggggaccg aacagcttct ggtgctggaa gagcaggccc
     1501 agcagcgccc cgacggccag cgcgggatgg tcttgttcgg ccagctctac cgcagcttca
     1561 tagcacgctg tcgcacgttc cacgtgtccg atgttggatc gggcttctcc tagctcacgc
     1621 aaggcggcga tccgctccgt ggtggacagc tccggtagat ccaaca
//
LOCUS       DASVXZ010000428         3816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_919106, whole genome shotgun sequence.
ACCESSION   DASVXZ010000428 DASVXZ010000000
VERSION     DASVXZ010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3816
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_919106"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..1233)
                     /locus_tag="VF788_08845"
     CDS             complement(124..1233)
                     /locus_tag="VF788_08845"
                     /inference="COORDINATES: protein motif:HMM:NF013847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HEX8934282.1"
                     /translation="MRIGSQDVLLPTTMVGNYPNPRWYDGQAYAVYPKGEFIYDAISR
                     EAHEDAIGAIVRDQEAAGLDIICDGRVNGGDSPYGQILYHYVERMTGYRLSGPPIGLP
                     IYSTLFAPTCVGEVTREHPFHLATLRATRKATKKPIKISYTGIQVLAAATNNQYYSET
                     KELAMAIAKAYNEDFKELADNGCDIIQLDEFVWPYGMGDWEIEVLNAAVEGAGCQFWV
                     HTCWGNYSGTPGYFPDEEEREFGAWVLDRRPATAPAPARAQAIFPQVLDANIDVLNYE
                     VGRTGPDDLKPLRDHDWSKDFAAGVIDVKSTVTETAEEVADRIRQVLEYVPAERLALS
                     TDCGLINLPRMLAASKLRALADGAALVREELASKQ"
     gene            complement(1396..3468)
                     /locus_tag="VF788_08850"
     CDS             complement(1396..3468)
                     /locus_tag="VF788_08850"
                     /inference="COORDINATES: protein motif:HMM:NF024938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEX8934283.1"
                     /translation="MSVLTGLEAVFAPRRVALVGASEQPGTMGELFWRNLTSFPGEVV
                     PVTPSRHSVGGVTAYPSLASIDGEVDLAVVVVRAANVPEVIRDAGAKGVPAALVISGG
                     FAETGPDGAALQAEVVAAARAGGVRIVGPNCFGVQNCDLPLNASMATGLPPGGGGITL
                     ATQSGSYGMAIHMLGIDERTRFAKVYAIGNKADIGDAEVLRYLVTDPASHRLCFFLES
                     LPDGREFCEAARMARTAGKPVIVARTGRSPAGIRAAQSHTAALAGSERIWRAALEQAG
                     VLVARSGLEMLDAARALDSQPPPAGNRIAVVTNSGGTGVELADLLADEGLAVPELSAA
                     LQDKLRTLLPKFASAANPVDITPVWRRFAELYPRVVDELAHSGEVDVIVPVLLQRAAI
                     DEAVAVALRDTITRLRCADVGVPVYVCWVAPRSARANADLLQQGGVPCFEWPERTARA
                     VGHAVRFGGIGLRPRAPSVTTLRPITSGDLPIRRLDPDQGADLLRTVDVATVESITCT
                     DVSDAVVAAQQIGYPVVCKVVHPDLLHRSDVGGVHLNLNGPDAVQAATHALLSLADGA
                     RVQVQPQLDGVEVAVGGLREPQFGPIVMIGLGGIWIEVIDDIVFGLAPLPPDEAHRLI
                     ARLRSYAALAGARGREPINLDAVATTVSAIGNLLVARPEIVDLDLNPLLATSTGAVAV
                     DWRITVRR"
     gene            complement(3456..>3816)
                     /locus_tag="VF788_08855"
     CDS             complement(3456..>3816)
                     /locus_tag="VF788_08855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934284.1"
                     /translation="HCDFITDMGHRTPAGSRAELGYSGGGPQWLVSELGIFDFDSEGT
                     ARLRQLFPDVDLETVRAATGFDLQVAADLSPVRPPSAAELAVLRGIDPLGVRRSEFSA
                     AELRRTFSHSTSGRCQC"
BASE COUNT          715 a         1234 c         1199 g          668 t
ORIGIN      
        1 tttaccagcg tgccgcgggt tcccaagtcc gcggcacgct cggcggttac ttcgtcgtgg
       61 ggtcgatcat gtcgatcaca gcgctggtcg gcacaggcca ggtctcggcc gggtgaatca
      121 cagtcactgt ttgctggcta gctcttcgcg caccagagca gcgccgtcag cgagcgcgcg
      181 gagcttgctc gccgcgagca tgcgcggcag gttgatcaga ccgcagtcgg tagacagggc
      241 gagtcgctcg gcgggaacgt attccagcac ctggcggatc cggtcggcaa cctcttcggc
      301 cgtctccgtc acggtcgact tcacgtcgat gaccccggcc gcgaagtcct ttgaccagtc
      361 gtgatcgcgc agcggtttga ggtcgtcagg gccggtccgg cctacctcat agttcagcac
      421 gtcgatgttg gcgtcgagaa cctgcgggaa gatcgcttga gcgcgggcgg gtgcaggcgc
      481 cgttgccggc ctgcggtcca gcacccaagc accaaattcg cgctcctcct catcggggaa
      541 gtagccgggc gttccagagt agttccccca acacgtgtgg acccagaact ggcaacccgc
      601 gccctctact gcagcgttga ggacctcaat ctcccagtcg cccatcccgt agggccaaac
      661 aaactcgtcg agctggataa tgtcgcaacc gttgtcggcg agctccttaa agtcttcgtt
      721 gtaagccttg gcaatcgcca ttgccaattc tttggtctcc gagtagtact gattgttcgt
      781 ggccgctgcg agcacctgga tgccagtgta agaaatcttg atcggctttt tggtggcctt
      841 gcgggttgcc cgtagcgtcg ccagatggaa cggatgctcc cgagtcacct cgcccacaca
      901 cgtcggcgcg aacagtgtcg agtagatggg aagtccgatc ggtggaccgg acaacctgta
      961 accggtcatc cgttccacgt agtggtagag gatctgtccg tatggcgagt cgccaccatt
     1021 gactcggccg tcgcaaataa tgtccaaacc ggcggcttcc tggtcccgaa caatcgcccc
     1081 aatagcgtcc tcgtgcgcct cccggctgat cgcgtcatag atgaactcac ccttggggta
     1141 gacggcatag gcttgcccgt cataccagcg cggattggga taattgccca ccatagttgt
     1201 gggtagcaaa acatcttgtg atccgatgcg cacgccttct ctcctcccat cgctggcggt
     1261 gccgtggacg cgggccgtcc agccggaatg tgacgaggcc cacagtaagg acagggcagg
     1321 gtcaatgctc cgtaatcacg ggccaaatcg aaatcttgag attcgtcctc gcaggactga
     1381 ttcgcctggc atcggctagc ggcgaaccgt gatccgccag tccaccgcca cggcacccgt
     1441 cgaggtagca agcagggggt tcaggtcgag atcgacgatc tctggcctag ctaccagcag
     1501 gtttcctatc gcggataccg tggtggccac cgcgtcgagg ttgatcggct cgcggccacg
     1561 agcccccgcc agcgcggcgt agctgcgtaa gcgggcgatt aagcgatgcg cctcgtcggg
     1621 cggcagcggg gccagaccga agacgatgtc atcgataacc tcgatccaga tcccacccag
     1681 accaatcatg acgatcggtc cgaattgggg ttcacggaga cctcctacgg cgacctcgac
     1741 cccgtcaagt tgtggttgga cctgcacacg ggcgccatcg gcgaggctca acaaagcatg
     1801 tgtggctgct tggacagcgt cggggccatt gaggttgaga tgcaccccac cgacgtcgct
     1861 gcggtgcagc agatctgggt ggaccacttt gcacacaacg ggatagccga tctgctgggc
     1921 cgcaacgacc gcatccgaga catcagtgca cgtgattgac tcgactgtgg ctacgtcgac
     1981 cgtgcgcagc aggtcggcac cctggtcggg atcgagacgc cgaatgggca ggtccccgct
     2041 ggtgataggc ctcagtgtgg tgacggacgg tgccctcggc cgaagaccaa tcccgccgaa
     2101 gcggaccgca tgacccaccg cccgggcggt gcgctccggc cactcaaagc aaggcacccc
     2161 gccctgctgc agcagatcag cattggcacg ggcgctacga ggcgccaccc agcacacata
     2221 caccgggacg cccacatcgg cgcaacgaag ccgggtgatc gtgtcgcgca gagcgaccgc
     2281 aacagcctca tcaatggccg cacgctggag caggacgggg acgatcacgt ccacctcgcc
     2341 ggaatgggcc agctcgtcca ccacgcgcgg gtacaactcg gcaaaacgtc gccacaccgg
     2401 cgtgatgtcg accggattgg ctgcgctggc gaactttggt aggagggttc gaagtttgtc
     2461 ctgcaatgct gcggacagct cgggtaccgc cagtccctca tcggcgagta agtcggcgag
     2521 ctccacgccg gttccgccag agttggtcac caccgcaatg cggttaccgg caggtggtgg
     2581 ctgcgaatcc agcgcacgcg ctgcgtcgag catctccagc cctgatcgag caaccaacac
     2641 accagcctgc tccagggcag ctcgccagat tcgttcactg cccgccaatg ccgcggtgtg
     2701 tgactgtgcg gcgcggatcc cggccggtga gcgcccggtt cgagcaacga tcaccggttt
     2761 gcccgcagtt cgggccatcc gggcagcttc gcagaactcc cgaccatcgg gcagcgattc
     2821 cagaaagaag cacaacctgt ggctggccgg gtcggtgaca aggtaacgca gcacttcggc
     2881 gtcaccaatg tcggccttgt tgccgatcgc gtacaccttg gcgaatcggg tgcgctcatc
     2941 aatgccgagc atgtggatcg ccatgccata cgacccagac tgggtggcca gggtgattcc
     3001 gcctcccccg ggcggcagcc cggtagccat cgacgcgttg agcggaaggt cgcagttctg
     3061 gactccgaaa cagttgggtc cgacgatgcg caccccgcca gcccgtgctg cggcgaccac
     3121 ttcggcctgc agggcggctc cgtctggccc cgtctcggcg aagccaccgc tgatcacgag
     3181 cgcagctggc acgcctttgg caccggcatc gcggatcact tccggaacgt tggcggcgcg
     3241 cacgacgacg acggcgaggt caacctcgcc gtcgatcgat gccaggctcg ggtatgccgt
     3301 gacccctccg acactgtgtc gagacggcgt cacgggtacg acttcgccag gaaagctcgt
     3361 gaggttgcgc cagaacagtt cccccatcgt gccaggttgt tccgatgctc cgacaagagc
     3421 gacgcggcga ggtgcgaata ctgcctcgag gccggtcagc actgacatcg accgctggtc
     3481 gaatgactga aggtgcgccg cagttcggcc gcggaaaact ccgagcgacg caccccaagc
     3541 ggatcgatgc cgcgcagcac cgctaactct gctgcgctgg gcggacgcac cgggctgagg
     3601 tcggcagcga cctgcaagtc aaaaccggtt gccgcgcgta ccgtctccag gtcgacatcc
     3661 gggaaaagct ggcgcaaccg ggctgtccct tcggagtcga agtcgaaaat gccaagttca
     3721 gaaaccagcc attggggacc accgccggag tagcccagtt cggcccggct gcctgccggc
     3781 gtgcggtgac ccatgtcggt gatgaagtca cagtgc
//
LOCUS       DASVXZ010000429         2059 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1569810, whole genome shotgun sequence.
ACCESSION   DASVXZ010000429 DASVXZ010000000
VERSION     DASVXZ010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1569810"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..850)
                     /locus_tag="VF788_08860"
     CDS             complement(<1..850)
                     /locus_tag="VF788_08860"
                     /inference="COORDINATES: protein motif:HMM:NF042897.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6777 domain-containing protein"
                     /protein_id="HEX8934285.1"
                     /translation="MNVRWLYSHRILVALLVTAVVAVGLMTILVVRQQQDQANSQVYL
                     EAGGSVGANPFVPLISPPAAASGDSAGGDTSIQTDAGADNRPACDTEKLISYLTKDSQ
                     AGAAWVHALNSDGNLSWSGGRKIETPQIPAYVRELTPRVLTEDLRVTDYQFTNGAALA
                     VQSVLEKGTAILVDPQGIARVRCSSGNPLTPMVQQKAPPIYRGKPWPSFQPQRVVATQ
                     HAPQCGGDEYYDGARCQRVSRCPDGEYAGDGGRCYGRGNPEPPDNAKRPDMQHWSGQP
                     ARLEEPG"
     gene            complement(1374..>2059)
                     /locus_tag="VF788_08865"
     CDS             complement(1374..>2059)
                     /locus_tag="VF788_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8934286.1"
                     /translation="TLLTRVDLAYWIGQAGDTQRAQEEAAAVAEDMTRVLGPDHRHTL
                     FARGGVVRWTALSGDFLRARELATALDEDAQRVLGADDPYILLGRAQLARWTGEAGDL
                     CRARELTAAVVEDTQRVLGADDRYTLAARALLVRWTGQAGDVEGARELAAALVEDDER
                     VLGAGHRHTLLARGDLAHWTGEAGDVVRAGELAATLIEDMVRTFGHDHPDTRAAQMRL
                     AKWIKNNEG"
BASE COUNT          384 a          656 c          617 g          402 t
ORIGIN      
        1 ggccgggttc ctcaaggcga gcgggctggc cggaccaatg ctgcatatcc ggccgcttgg
       61 cgttgtccgg tggctccggg ttcccccgcc cataacaccg accgccgtcg cccgcgtact
      121 cgccgtccgg acaacgtgaa acccgctggc aacgtgcacc atcgtagtac tcatcgccgc
      181 cacactgcgg agcatgttga gtggcaacaa cacgttgagg ttggaaactg ggccacggct
      241 tgcctcgata aattggcggc gctttttgtt gaaccatagg tgtcagcgga ttgccagagg
      301 aacatcgaac tcgagcaata ccctgggggt ctacaagaat tgcagttcct ttttcgagaa
      361 ccgactgcac ggcaagggcg gcaccgttgg tgaactggta gtcagtgact ctgaggtcct
      421 ccgtgaggac tcgtggtgtg agctcgcgaa cgtaggccgg aatctgtgga gtctcaattt
      481 ttctgccacc gctccagcta agattaccgt ctgaattaag tgcgtgcacc caagctgcac
      541 ctgcttggga gtctttcgtg aggtacgaaa tgagcttctc agtgtcgcat gctgggcggt
      601 tgtccgcacc ggcgtccgtc tggatcgacg tgtcaccacc cgcagaatct ccgctcgccg
      661 ctgcgggtgg ggatatcagg ggcacaaaag gattcgctcc tacgctgcca cctgcttcga
      721 gatagacttg actgttcgcc tgatcctgct gttggcggac cacaagaata gtcatcaacc
      781 ccactgcaac cacggcggtc accagcaagg cgaccaggat ccggtgcgag tacaaccagc
      841 gaacattcat gtgcggctct cctgttagac gcgacacccc aaagagccga accagcatgg
      901 acaacctgga tggagtggag atcgtttggt tgacataacc cagacaacac tcagcagtta
      961 aggaagaagt ggcacatcga ccggctgttg catgtagatc aataagctac atgtcattac
     1021 gtgtataagt tggcacgagc aaccccctcg atgggaacgg tccccgaccg gtgagccacc
     1081 gtagttgccc tcgcaaaagt agtcaagggg tgacggttcg actactcagc gtgttcgtcg
     1141 gccccgaggg taacgtgagt agccctcggc gcttcgtgtc gcgccgctga cccaggcacg
     1201 gatgcgcagc caatgtgtgc tgatcattgg gagcttcgtc agcgtagccg tagctggggg
     1261 tggtgaacgt tatcgggtct tgctgcgcgg cgttgtctat ccagctgtcc tcggcgtcgg
     1321 gccctcgaca agccatggtt gctccagcag cgcggaggct gagtgcgctg tcgtcatcct
     1381 tcgttgtttt tgatccattt ggctaagcgc atctgggcgg ctcgggtatc cggatgatca
     1441 tggccgaatg tccgcaccat gtcctctatc agcgtggcgg ccaattctcc agcccgaacc
     1501 acgtcacccg cctcccctgt ccagtgggcc aggtcaccgc gggcaagcag ggtgtgccgg
     1561 tgaccggcgc cgagcacccg ctcatcgtcc tcgaccagcg cggcggctag ctcccgggcc
     1621 ccctccacgt ccccggcctg ccctgtccac cggaccaaca gggcccgcgc ggccagcgtg
     1681 taccggtcat cggcgccgag tacccgctgg gtatcctcga ccaccgcggc agtgagctct
     1741 cgtgcccggc acaggtcgcc ggcctctcca gtccacctgg ccagttgagc tcggccgagc
     1801 agtatgtacg ggtcatcggc gccaagcacc cgctgcgcat cctcgtccaa cgcagtggcc
     1861 aactcccgcg cacgcaggaa atcacctgaa agcgctgtcc accggacaac gcctccccgg
     1921 gcgaacaagg tgtgccgatg atcaggcccg agcacgcggg tcatatcttc ggccaccgcg
     1981 gcggcctcct cctgcgcccg ttgggtgtcc ccggcctgcc caatccagta cgcaaggtcg
     2041 actcgggtga gcagggtgt
//
LOCUS       DASVXZ010000430         8286 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1211267, whole genome shotgun sequence.
ACCESSION   DASVXZ010000430 DASVXZ010000000
VERSION     DASVXZ010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8286
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1211267"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..1503)
                     /locus_tag="VF788_08870"
     CDS             complement(43..1503)
                     /locus_tag="VF788_08870"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX8934287.1"
                     /translation="MLDRIGSGGMGVVWQAMDERLQRLVAVKQLLLQPQLSPRATDEA
                     RARALREARIAARLQHPNAIVVYDVAEHDGEPCLVMEYLPSRSLAAVLGERCCLPVAE
                     VASIGRQIASALAAAHAAQIVHRDVKPGNILIADDGTAKITDFGVSRAVGDVTVTQTG
                     MMAGTPAYLAPEVARGQLPTAASDVFSLGATLYAALEGQGPFGDSDNPLALLHAVASG
                     QVTPPRHAGALSAVLMKLLAKDPAARPDMHRASLEFAAAPITRPVHRTASTSKPGRKD
                     SSGAALPPTVVSARSLSPAPRLVPLAPAASRPRAPRRRVNAGVLVGAVLALLAFAGGG
                     VLLTRGFTGEQAAQSAGLGSTSAPAAVPAPPVTPPPQPQMQRVDHVQPIAWSNAGQLV
                     IDYYNGLDKLPTAWQMLSPTAQAAFGTEPQFRSYWSEYSSVSARNAFGVTDNPDGSVR
                     VPVEVTYNKGGNAEVVKRVLRVNRLDGRLLIDSDPR"
     gene            1701..4214
                     /locus_tag="VF788_08875"
     CDS             1701..4214
                     /locus_tag="VF788_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003064148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3516 domain-containing protein"
                     /protein_id="HEX8934288.1"
                     /translation="MTLTEALPAASGPDELFDTFASWVSDQGLALYPAQEEALIEIVS
                     GSNVILATPTGSGKSLVATGAHATALAQGKRSVYTAPIKALVSEKFFAYCGVFGADQV
                     GMLTGDSSVNAAAPIICCTAEVLANMALRSGPDTDVGLVVMDEFHYYADPDRGWAWQV
                     PLLELPQAQFLLMSATLGEVTRFEEDLTRRTGRSTAVVRSAQRPVPLHFRYVSTPLHE
                     TLEELLATNSAPVYVVHFTQAAAAEQAQALTSINVCSRAEKDAIAELIGAFRFTAGFG
                     RTLSRLVRHGIGVHHAGMLPRYRRLVERLAQSGLLKIICGTDTLGVGINVPIRTVLLT
                     GLAKYDGTRTRHLTAREFHQIAGRAGRAGYDTAGSVVVQAPEHVVDNAKAVAKAGDDP
                     RKRRKIVRKKPPEGSVSWSDRTFERLVAAEPEALSSSFAVSHAMLLNVANRPGDAFAA
                     MRHLLTDNHEDRPVQRRLIRQAIAMYRALLAAGVIERLPFPDADGRTVRLTGDLQLDF
                     ALNQALSPFALAAIELLDRDSLDYPLDVLSMLEATLDDPRQILGAQLSKAKGEAVAAM
                     KAEGIEYEERMRLLEDITYPMPLAELLDAAFETYRQGHPWVADHRLSPKSVARDLAER
                     AMTFTEYVGFYGLARSEGLVLRYLAGAYQALRRTVPEDAKTDALRDLEEWLGELVRQV
                     DSSLLDEWENLRNPLQESVQESMPASVDHRPPPVTANSRAFRVLVRNALFRRVELAAR
                     RRWTELGELDVDAGWNAQAWQDAVEPYFDTHAEISTGADARGPHLLIIDYQPGKWIVR
                     QILDDPAGHHDWAINAEVDLPASDEAGTAVLRVTTVGPA"
     gene            complement(4226..4627)
                     /locus_tag="VF788_08880"
     CDS             complement(4226..4627)
                     /locus_tag="VF788_08880"
                     /inference="COORDINATES: protein motif:HMM:NF017170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF742 domain-containing protein"
                     /protein_id="HEX8934289.1"
                     /translation="MAEPAWAEGPEWLGWSPGETGVESGSLVRPYFWTGGRTASRCEL
                     SLEALVSATDQPIDPTAPPEHSTILMLCAAPRSVAELAALVSIPLGVARVVLGDMAEA
                     GSVVVHRTVSSADAFPDVALMQRVLNGLQRL"
     gene            4799..4978
                     /locus_tag="VF788_08885"
     CDS             4799..4978
                     /locus_tag="VF788_08885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934290.1"
                     /translation="MFSVAMVGYGGVLLFRRLRCCPAATASSAPESGAGKADLEIIGG
                     AMSPHLLLCGHGAAD"
     gene            complement(5052..5615)
                     /locus_tag="VF788_08890"
     CDS             complement(5052..5615)
                     /locus_tag="VF788_08890"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX8934291.1"
                     /translation="MAVNSFMVPLGTPAPPFALPSLDGEIVRSEDLAAGRPLLVMFLS
                     NHCPYVRHLERQLGSLVTEHAGDVAAVAICSNDIANYPDDGPEGLTEQARRAGFTFPY
                     LLDETQQIALVYRAACTPDFFLYDAAGQLAYRGEFDESRPRNDIPVTGQALRAALELV
                     LAGKPVGEPQMPSLGCGIKWKPGNAPS"
     gene            5648..6364
                     /locus_tag="VF788_08895"
     CDS             5648..6364
                     /locus_tag="VF788_08895"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX8934292.1"
                     /translation="MRTVRWAVGWPIVELYEVMRTTPATRSFTGQAVPNAVVHRILDH
                     ARFAPSGGNRQGWQVVLLRDAAIRRRIRELYGLSWREYMAHVEEGLVPFAPREHGRWN
                     GPAVDLEAARQLPRPNDFADTLDTVPVLLLLIARLDALACVDNGLGRQSIVGGGSIYP
                     FGHNILLAARNEGLGGVLTSVLVRQEDAVRKLIGIPDDHAVAGLIALGYPVRTVRKLR
                     RRPVDQFTTVDRFDGPAFEP"
     gene            complement(6398..6592)
                     /locus_tag="VF788_08900"
     CDS             complement(6398..6592)
                     /locus_tag="VF788_08900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEX8934293.1"
                     /translation="MLGKLRKLVILVGLVEGARRFAKANPEAAAKIAVQVAGLLDNLT
                     KGKFHDQIDGVVRKLQGGEA"
     gene            complement(6746..7111)
                     /locus_tag="VF788_08905"
     CDS             complement(6746..7111)
                     /locus_tag="VF788_08905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rv2175c family DNA-binding protein"
                     /protein_id="HEX8934294.1"
                     /translation="MSDLPIAPDVLDPEVVALPLPDVAQRLGLPVTRVHQMLRDGQLL
                     GIRRHGVVVVPAEFFTGNAVVKGLSGTITLLRDAGYPPEEILRWLFTAEDSLPGTPIG
                     ALRTDRGREVKRRAQAMGF"
     gene            7286..>8286
                     /locus_tag="VF788_08910"
     CDS             7286..>8286
                     /locus_tag="VF788_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005458355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEX8934295.1"
                     /translation="MSTVYRGTDTRLERPVAIKVMAPRFAADPVFLQRFGREARAAAR
                     LHHPNVVGVHDQGVDSSPAGDYVFLVMELVDGGTLRDLLRQYGRLPVPLALSVTEMVL
                     SALAAAHQEGLVHRDIKPENVLIGPGGVVKVADFGLVRAAAEANSSTGDVILGTVAYL
                     SPEQVATGAADSRSDVYATGVLLFEMLTGAPPYTGETALSVAYRHVNDDMPAPNTAGA
                     AVPAALDELIVRATRREPAARPPHAAAFLSALQQVRRNLGIDQVHVPVPDKAGSASIG
                     LGHLEIGPGGTRALTRADAAGEPDVRQDERPGAPVITALEPVPVALDPRRDPYQRERA
                     "
BASE COUNT         1373 a         2768 c         2770 g         1375 t
ORIGIN      
        1 cctatgtgtg ccggcaccca gctgtggcca gtgacgacag catcaccgcg gatccgagtc
       61 gatgagcagg cggccatcca aacggttcac ccgcagcacc cgcttgacga cttcagcgtt
      121 gccgcctttg ttgtaagtga cctccacggg tacccgcacc gagccgtcgg ggttgtccgt
      181 gacgccgaag gcattgcgag cgctgaccga ggagtactcg ctccagtacg accggaactg
      241 cggctcggtg ccgaaggccg cctgcgcggt gggtgaaagc atttgccagg cggtcgggag
      301 cttgtccagg ccgttgtagt aatcgatcac cagctgccca gcattgctcc acgcgatcgg
      361 ctggacatgg tccactcgct gcatctgtgg ctgcggaggc ggtgtgaccg gcggtgccgg
      421 caccgccgca ggtgccgagg tggaacctag cccggccgac tgcgcggcct gttctccggt
      481 gaagcctcgc gtcagcagca ccccgccgcc ggcgaacgca aggagcgcta gaacagcccc
      541 caccagcacg ccggcattaa cgcgccgtcg cggcgcgcgc ggccgagaag cagcaggggc
      601 caagggaacc agccgcggcg cagggctgag cgagcgcgcg gataccaccg tcggcgggag
      661 cgcggcacct gaggaatcct ttcttcccgg tttggaagtt gaagcggtcc ggtgcaccgg
      721 tcgcgtgatc ggcgccgcag cgaactccag gctggcgcgg tgcatgtcgg ggcgcgctgc
      781 cgggtctttg gcgagcaact tcatcagcac cgcggacagc gcgcccgcgt gccggggtgg
      841 tgtcacctgc ccgctggcca ccgcgtgcaa caacgcgagc gggttgtcgc tgtcaccgaa
      901 gggaccctgc ccttccagcg ccgcatataa cgtggcgccg agggagaaca catccgaggc
      961 cgcggtaggg agctgcccgc gggcgacctc gggagcgagg taggcgggag tgccggccat
     1021 cattcccgtc tgcgtgaccg tgacatcgcc gacagcacgt gagacgccga aatcggtgat
     1081 cttggcggtg ccgtcgtcgg cgatcaggat gtttccaggc ttgacgtctc gatgcacgat
     1141 ttgtgctgca tgggctgcgg ccagcgctga ggcgatctgc ctgccgatcg aggcgacctc
     1201 ggcgacgggc aggcagcacc gctcgccgag caccgcagcg aggctgcgcg agggcaggta
     1261 ttccatcacc aggcagggct cgccgtcgtg ctcggccacg tcgtagacaa cgatggcgtt
     1321 cggatgctgt agccgcgcgg cgatgcgcgc ctcccgcagt gcccgagcgc gggcttcatc
     1381 ggtcgccctg gggctaagct ggggctgcaa caacagctgt tttaccgcca ccagccgctg
     1441 gagccgctcg tccatcgcct gccagacgac gcccatgccg ccgctgccta tccggtcgag
     1501 cacccggtag tggccggcga tcagctgacc cgtgtcgata tgcggtcact ccctttagtt
     1561 ttcccgcatg ggcgcccagc atctcctcgg cacagcgtcc ccgaccggac tcaggttacc
     1621 gcccagcaac cggcttggcg cgccagcccg gggccccggc tcgctccgag aaggagattc
     1681 cgggcaccat cgtgaccacc atgactctca ccgaggcgct gcccgccgct tccgggcccg
     1741 acgaactgtt tgacaccttt gccagctggg tgtcagacca gggtctggcc ctgtatccgg
     1801 cccaggaaga agcgctgatc gagatcgtct cgggctccaa cgtgattttg gccactccta
     1861 ccggatcggg taagagcctg gttgcgacgg gcgcgcacgc taccgcgttg gcgcagggca
     1921 aacgcagcgt ctacaccgcg ccgatcaagg cgctggtgtc ggagaagttc tttgcgtact
     1981 gcggtgtttt cggtgccgat caggtcggga tgctcaccgg tgactccagc gtcaatgccg
     2041 cggcacccat catctgctgt acggctgagg tcctggcaaa catggcgcta cgcagcgggc
     2101 ccgacaccga cgtcggtttg gtggtgatgg atgagttcca ctactacgcc gacccggatc
     2161 gcggctgggc ctggcaggtg ccgctgctgg aactgccgca ggcccagttc ctgctgatgt
     2221 ccgcgacgct gggcgaggtg acccgattcg aggaggacct gacccggcgc accggccgct
     2281 ctaccgcggt ggtccggtcc gcccagcgac cggttccgct gcatttccgg tacgtgagca
     2341 caccactgca cgagacactc gaagagctgc tggccaccaa ctcggcgccg gtgtacgtgg
     2401 tccacttcac gcaggccgcc gccgcagagc aggcacaggc gctgaccagc attaacgtct
     2461 gcagccgcgc agagaaggac gccatcgccg agctgatcgg tgcattccgg ttcaccgccg
     2521 gtttcgggcg cacgctctcc cggctggtgc gccacgggat cggagtgcat cacgcgggca
     2581 tgctgccgcg gtatcgccgc ctcgtggagc ggctcgccca gtccggtctc ctcaagatca
     2641 tttgtggcac tgacaccctc ggggtgggga tcaatgtgcc gatccgcacc gtgctgctca
     2701 ccggcctggc gaaatacgac gggacccgca cccgtcatct caccgcgcgg gagttccacc
     2761 agatcgccgg ccgggccggc cgagccggct acgacactgc cggctcggtc gtcgtgcaag
     2821 ctcccgaaca cgtggtcgac aatgcgaagg cggtggccaa ggcaggcgac gatccccgca
     2881 agcgccgcaa gattgtccgc aagaagcccc ccgagggttc ggtgtcctgg agtgaccgca
     2941 ccttcgagcg gctggtggcc gccgagccgg aagcgctgag ctccagcttt gccgtcagcc
     3001 atgcgatgtt actcaacgtc gccaaccggc ccggcgacgc gttcgccgcg atgcgccacc
     3061 tgctcaccga taaccacgag gaccggcccg tgcagcgccg gctgatccgc caggccatcg
     3121 cgatgtaccg cgcgctgctg gccgccggtg tgatcgagcg gctgccgttc cctgatgccg
     3181 atggccgtac ggtgcggctg accggggact tgcagctcga cttcgcgctc aaccaggcgc
     3241 tttcgccatt cgcactggcc gcgatcgagt tgctggatcg ggattcgctc gactacccgc
     3301 tggacgtgct ttccatgctc gaggccacgt tggacgaccc tcgacagata ctgggggcgc
     3361 aactgtccaa ggccaagggc gaggcggtgg ccgcgatgaa ggccgagggc atcgagtacg
     3421 aggagcgcat gcgtctcctt gaggacatca cctaccccat gccgctggct gagctccttg
     3481 acgccgcatt cgagacctac cggcagggtc acccgtgggt ggccgaccat cggctgtccc
     3541 ccaaatcggt ggcccgtgat ctggccgagc gggcgatgac cttcaccgag tacgtcgggt
     3601 tctatggtct ggcccgctcc gagggactgg tactgcgtta cctggccggc gcctaccagg
     3661 cgctgcggcg cacggtgccg gaggacgcca agaccgacgc actgcgggat ctcgaggagt
     3721 ggctcggcga gctggtccga caggtcgact ccagcctgtt ggacgaatgg gagaatctgc
     3781 gcaatcccct gcaggaatca gtgcaggagt cgatgccggc atcggtggac caccgacccc
     3841 cgccggtcac ggccaactct cgggccttcc gggtgctggt gcgtaatgcc ctgttccgcc
     3901 gggtggagct ggccgcccgc cggcgctgga ccgaactggg tgagctcgac gtggacgccg
     3961 ggtggaatgc gcaggcctgg caggacgcgg tggaaccgta cttcgacacc catgccgaga
     4021 tcagcaccgg cgcggacgcc cgcggaccgc atttgctgat catcgactac caacccggca
     4081 agtggatagt gcggcagatc ctggacgatc cggcgggaca ccacgactgg gccatcaacg
     4141 ccgaggtcga cctgcccgcc tccgatgagg ccgggacagc cgtgctgcgg gtgaccacag
     4201 tcggcccagc ttgaggctgg ttggatcaga gccgctggag gccgttaagc actcgctgca
     4261 tcagggcgac atccgggaac gcatcagcgg agctcacggt ccggtgcacc acgacgctgc
     4321 cagcctcagc catgtctccc aacaccactc gggccacccc cagcggaatc gagaccaagg
     4381 ccgcgagctc cgcaacggaa cgtggagctg cgcacagcat caggatggtg ctgtgctccg
     4441 gcggcgcggt cgggtcgatc ggctgatcgg ttgccgagac caaggcctcc agagagagtt
     4501 cacatcgcga cgcggtccgt cctcccgtcc agaagtaggg ccgcaccaag ctcccggatt
     4561 ccacgcctgt ctcaccgggg gaccagccaa gccactcagg accctcggcc cacgccggct
     4621 cagccaccaa cagtctggtc tccgcctgat gctcgacacc agtggtcttc gaacgcgggt
     4681 cagggggccg cagcccggta cccgtacatt cggattccgt gcgttcggat tccggccccc
     4741 tacgccgcca ccgcttcaag ccggttgaga accgggcgcc ggtctgaccg acgagcggtt
     4801 gttcagcgtg gcgatggtgg gctacggcgg cgtcctgctc tttcggcggt tgcgctgctg
     4861 cccggctgcg acggccagca gcgcccccga atcgggcgcc ggtaaggccg acctcgagat
     4921 catcggcgga gcgatgtccc cccatttgtt gctctgcggc cacggcgcgg cagactaggc
     4981 catctgtgtt aacgggttgt aacaggaggt gttcgtcttg ttacagtcca tcagatggtc
     5041 atgtggcgcc ctcagctcgg tgcgttacct ggtttccact tgattccgca cccgaggctg
     5101 ggcatctgag gttctcccac cggcttgcct gccagcacca gctccagcgc cgcccgcagt
     5161 gcctggccgg tcactgggat gtcgttgcga ggccgggact catcgaactc tccccggtag
     5221 gcaagctgac ccgccgcgtc atagaggaag aagtcggggg tgcaagcggc ccggtagacc
     5281 agtgcgatct gctgagtctc atcgagcagg taagggaaag tgaacccggc gcggcgggcc
     5341 tgttcggtca gcccctccgg accatcatcg ggatagtttg cgatgtcgtt gctgcagatc
     5401 gccacggcgg ccacatcgcc ggcatgttcg gtgacgagtg agccgagctg ccgctcgaga
     5461 tgccggacat agggacagtg gttggacaga aacatcacca gcaacggccg accggcggcg
     5521 aggtcctccg agcggacgat ctcgccgtcg agagacggca gagcgaacgg cggtgccggc
     5581 gtgccgagcg ggaccatgaa cgagttcact gccatgccgg taagtttccc atcacagtga
     5641 tagatccgtg agaaccgtgc gatgggcggt aggttggccg atcgtggagc tctacgaggt
     5701 gatgcggacg acgccggcaa cccgatcgtt cacaggtcag gcagtgccga acgcagtagt
     5761 gcatcgcatt ctcgaccacg ccaggttcgc acccagcggg ggcaaccggc agggatggca
     5821 ggtggtcctg ctccgggacg ccgcgattcg gcgcaggata cgagagcttt atggcctcag
     5881 ttggcgcgaa tacatggcgc acgtcgaaga gggactggtg ccgttcgccc cgcgggagca
     5941 cggccgctgg aacggtccgg cggtggatct cgaggcggcc cgccagctac cgaggcccaa
     6001 cgacttcgct gacaccctgg acaccgtccc ggtgttgctg ctgctgattg cccgtctcga
     6061 tgcgttagcg tgcgtcgaca acggcttggg tcggcagagc attgtcggcg gcgggtcgat
     6121 ctatccattc gggcacaaca tcctgctggc agcccgcaac gaaggcctcg gtggtgtgct
     6181 gacgtcggtg ttggtccggc aggaggatgc cgtgcggaag ctgatcggta tccctgatga
     6241 ccacgcggtg gctggcctta tcgcactggg atatccggtg cgaacagtgc gcaagctacg
     6301 taggcggccc gtcgaccagt tcacgactgt ggatcggttc gacgggccgg ccttcgagcc
     6361 ctgatcagcg gccgtgatca agtatcgcta gcctgcctca ggcttcaccg ccttggagct
     6421 tgcggaccac gccgtcgatc tggtcgtgga acttgccctt ggtgagatta tccaggaggc
     6481 cggcgacctg cacggcaatc ttggcggccg cctcggggtt ggccttcgcg aaacggcgag
     6541 caccttccac aagccccacc agaattacaa gcttccttag cttccccagc attgtttcct
     6601 ccctaggcca ccacgatttc cacgagatca ccgcgaagtg gcgaggatac cgcgaccgga
     6661 tcgggcccgg gaggatggtc gggcaaagtc ggtcacaatc ccccagtcag gatcctcagt
     6721 caagattccc tgacgccgtt gccggtcaga atcccattgc ctgggcgcgg cgcttcacct
     6781 cacgaccccg atcggttcgc aacgcgccga tcggggtgcc ggggagcgaa tcctctgcgg
     6841 tgaacaacca acgcaggatc tcctcaggcg ggtagccggc gtcgcgcagc agcgtgatcg
     6901 tgccggacag ccccttaacc acggcgttgc cggtgaaaaa ctccgcgggt accaccacca
     6961 cgccgtggcg gcgtattccg agcagctgcc catcgcgcag catctggtgc acccgggtta
     7021 ccggtaatcc gagccgttgc gccacatcgg gcagcggcag cgccaccacc tcgggatcga
     7081 gcacgtccgg ggcgattggg aggtcgctca cagtggtcac gatgccatac ctaccagcca
     7141 gcgcccttcc gccgttcggg gcgcgcggag agtctcctac gatcctcgaa ctgtggaagc
     7201 gccggggtcc gatcacgacg ggaacctggt cggcaccctg ttggaggggc gctaccgggt
     7261 tggtcccgtg ctggcccgcg gtggtatgtc gacggtctac cgcggcacgg acacccggct
     7321 ggagcgtcct gttgccatca aggtgatggc cccccggttc gctgccgacc cagtgttcct
     7381 gcagcgcttc gggcgggaag cccgcgccgc cgctcggctg caccacccca atgtcgtggg
     7441 ggtccatgat caaggggtcg actcctcccc tgccggtgac tatgtgttcc tggtgatgga
     7501 gcttgtggac ggcggaacct tacgagacct gctgcgccag tacggcaggc tgccggtgcc
     7561 gctggcgctc tcagtcaccg agatggtgct ttcggcactc gccgcggcgc accaggaagg
     7621 cctggtgcat cgcgacatca aaccggagaa cgtgctcatc ggtcctggtg gtgtggtgaa
     7681 ggtggccgac ttcgggctgg tccgagccgc tgccgaggca aacagcagca ccggggacgt
     7741 catcctcggg acagtggcct acctgtcacc cgagcaggtt gcgaccgggg cggccgactc
     7801 ccgcagcgac gtctacgcca ccggggtgct gctgttcgag atgttgaccg gggcaccgcc
     7861 ctacaccggt gagaccgccc tgtcagtggc ctaccgccac gtcaatgacg acatgccggc
     7921 tccgaacacg gcgggtgcgg cagtgcccgc agcgctcgat gagctgatcg tgcgggccac
     7981 ccgccgagaa ccggcggctc ggccaccgca cgcggcggcg ttcctgagcg cgctgcaaca
     8041 ggtccgcagg aacctcggga tcgatcaagt acacgtacct gtccctgaca aagctggatc
     8101 cgccagcatc gggctgggcc atctcgagat tggaccgggc ggcacccggg ctctcaccag
     8161 ggctgatgct gcgggcgagc cggatgtgcg ccaagacgag cggccagggg cgccagtgat
     8221 caccgcgctc gagcccgtac ccgtcgcgtt agaccctcgt cgcgacccgt accagcgtga
     8281 gcgtgc
//
LOCUS       DASVXZ010000431         1533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1211370, whole genome shotgun sequence.
ACCESSION   DASVXZ010000431 DASVXZ010000000
VERSION     DASVXZ010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1211370"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VF788_08915"
     CDS             <1..409
                     /locus_tag="VF788_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005159022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HEX8934296.1"
                     /translation="DFSWLINGFVQRVPSVTHALLLSSDGFPLTASESVSSDGAEQLA
                     AIASGLLGLARNSAAIFGKGNCELIIIRLSRGYFLFMGIGEYAGLAVLTSARCNMKAV
                     AYEMTQFVDTAAGALTPKARADLRRVITARRAD"
     gene            445..786
                     /locus_tag="VF788_08920"
     CDS             445..786
                     /locus_tag="VF788_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF742 domain-containing protein"
                     /protein_id="HEX8934297.1"
                     /translation="MRSKRIRLYALTGGRTRSRHHLLVETLISVPQYDPRLAETLMPE
                     SQALYELARETTSIAEMSAHLAIPLGVIRVLISDLAAQDAVFIHPTGFTYQYDRIILE
                     RILDGLKKLPA"
     gene            761..1381
                     /locus_tag="VF788_08925"
     CDS             761..1381
                     /locus_tag="VF788_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HEX8934298.1"
                     /translation="MDSRNYPLDASSLTISAKIVIAGGFGVGKTTFVGSVSEVKPINT
                     EAWMTVASEGVDPLPDSGKTTTTVAMDFGRITLHSDLVLYLFGTPGQSRFWFLWDDLC
                     RGALGAVILVDTRQIQDSFAAINYFENDSDIPFIVAVNKFDGELGYELDEVREALTLG
                     PDVLLTTCDARDPGSTSKALQELVSYTMSCTVSYGPDVTWGQQQEG"
     gene            1387..>1533
                     /locus_tag="VF788_08930"
     CDS             1387..>1533
                     /locus_tag="VF788_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020638618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8934299.1"
                     /translation="MRKVLIVGAGQAGLQLGLSLQSHDYDVTVMSARTPEEIRGGRVM
                     STQCM"
BASE COUNT          294 a          458 c          485 g          296 t
ORIGIN      
        1 agattttagc tggctgatca atgggtttgt ccagcgggtg cccagcgtca ctcatgcgct
       61 gctgctgtcc tccgacggat ttcccttgac ggcgtcggaa tcagtgagca gcgacggcgc
      121 cgaacagctc gcggcgatcg ctagtggtct gctgggcctg gcccgcaaca gcgcggcaat
      181 attcggtaag ggcaactgcg aactaatcat catccgactg tcgcgtgggt acttcctgtt
      241 catggggatc ggcgaatacg cgggcttggc agtgctgacg tcagcccgct gcaacatgaa
      301 ggcggtcgct tatgagatga cacagttcgt ggacacggcc gcaggtgcat tgaccccgaa
      361 ggctcgggcc gatctgcggc gtgtcatcac cgctcggcga gccgactgaa caggcggagg
      421 agggcggcgg tggaacacat tgcgatgcgc agcaagagga tccgacttta tgcgctcacc
      481 ggagggcgga ccagatcacg acaccacctc ttggtagaga ccctgatatc ggtgcctcag
      541 tacgatccgc ggctggccga gaccctgatg ccggaatcgc aggcgctgta cgaactcgcc
      601 cgggaaacga cctccatcgc ggagatgtcc gctcacttgg ctatcccatt gggggtgatc
      661 cgcgtgttga tcagcgacct ggcggcgcaa gatgcggtgt tcatccatcc caccggcttc
      721 acgtaccagt atgaccggat catcctggag aggatcctcg atggactcaa gaaactaccc
      781 gcttgatgct tcttcgttga ccatttcagc gaagatcgtg atcgctggtg gtttcggggt
      841 gggcaagacc accttcgtgg gttcggtgtc cgaggtcaaa ccgatcaaca ccgaagcatg
      901 gatgaccgtg gccagcgaag gcgtcgatcc gctgccggac agcgggaaga cgaccaccac
      961 ggtagccatg gacttcggtc gcatcaccct gcactccgac ctcgtgctct acctgttcgg
     1021 cacgccgggc cagtcccggt tctggttcct ctgggacgat ctgtgccggg gcgcgctcgg
     1081 cgccgtcatc ctggtagaca cccggcagat ccaggactcc ttcgcggcaa tcaactattt
     1141 cgagaacgac tctgacattc ccttcatcgt ggccgtgaac aagttcgacg gcgaactcgg
     1201 ctacgagctc gacgaggtgc gggaagcgct gaccctgggc ccggacgtgc tgctgacgac
     1261 gtgcgatgcc cgggatcccg gatcgacctc gaaagcgctg caggaattgg tgtcctacac
     1321 catgagctgc accgtctcct acggccccga tgtgacctgg ggacagcagc aggagggtta
     1381 acgccgatgc ggaaggtatt gatcgtgggt gccggtcaag ccggcttgca gctgggtctg
     1441 agcttgcaaa gccacgacta cgacgtcacc gtcatgtcgg cccgtactcc ggaggagatc
     1501 cgcggtggac gggtcatgtc aacgcaatgc atg
//
LOCUS       DASVXZ010000432         1516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1748189, whole genome shotgun sequence.
ACCESSION   DASVXZ010000432 DASVXZ010000000
VERSION     DASVXZ010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1748189"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VF788_08935"
     CDS             <1..602
                     /locus_tag="VF788_08935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division initiation protein"
                     /protein_id="HEX8934300.1"
                     /translation="RNPGPLPSAGPVMPSLRPPISEPIAPDADHDLRAAKVLVLAQKM
                     ADQLSEQAHTKADRMLTQARTYCGQLLSEARITAADMIDQARTRVETMVSDARTTAET
                     LQRQSEDQATSLEQDAARKRAEILGALHQDKSLVENTIEDLRGFEQNYRVRLAAHLQS
                     LLRELDGLEFAAPADPIRAPQDLVSSGLGARGETDQSPP"
     gene            1071..>1516
                     /locus_tag="VF788_08940"
     CDS             1071..>1516
                     /locus_tag="VF788_08940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934301.1"
                     /translation="MAAVVPVLAAVWCRSVGTFWTVEVHQLDGGTAPGTVVDWISSGV
                     PISQPEPDALARGLLAEHGLQLFPNSSVGPCTYSRHGIGYVCTNAELLKLAQVARDDA
                     ADIGADPVGLATQWSAAGFPADAAASCIRAGIPTPQTAQQTVRSKL"
BASE COUNT          278 a          484 c          504 g          250 t
ORIGIN      
        1 ggcgtaaccc tggaccgctg ccgtctgctg ggccggtgat gccgtccctg cggccaccga
       61 tcagcgaacc gatcgcgcct gatgctgatc acgatctccg ggccgccaag gtactcgttc
      121 ttgcgcagaa aatggctgac cagctcagcg agcaagccca caccaaggcg gacaggatgc
      181 tgacccaggc gcggacctac tgcgggcagt tgctctccga ggcgcgcatc acggccgcgg
      241 acatgatcga ccaggcccgt acccgggtcg agaccatggt ctcggacgcc cgtaccactg
      301 ccgagacact gcaacggcag tccgaggacc aggcgacgtc gctggagcag gatgcggccc
      361 gcaagcgtgc cgagatcctg ggcgccctcc accaggacaa gagtttggtg gagaacacta
      421 tcgaggacct gcggggattc gagcagaact accgtgttcg gttggcagcc catttgcagt
      481 cactgcttcg cgagctcgac gggctcgaat ttgccgcacc agcagacccg atacgcgccc
      541 cgcaggatct ggtgagctcc gggctgggcg cgcgcggtga aaccgatcag tccccaccgt
      601 gatcaaaatg acggggcgac cggcgtcgtc acgagcgcac ccggtggcat ggcccacagc
      661 gggttggcct gcggtggggg cggcagtggg ttatccgttg tccggtagtt gtggggggat
      721 cgaaatgatg ttgccttggt catggatacg gggctagtca gcgcggcatg gccccggatg
      781 ggtgatgtga atagcccgaa agcgcggcag agtcatcgac cgcagcgttg cgttgagact
      841 ctgcggattg aggcggcggg gacgccaaca atccacgatc cgtggcattc cgctcggatc
      901 acatcgaaac atcatcaacg ggtgccgccc gctgtgatca aacaacgtgc cagtcttccg
      961 tggagtggtt gtgatcatcc gggccgccat gaggcgccat gacagtcacc gccgacactg
     1021 cgacgataac cggtcgggcc gatacggtcg ggcagcgagc gtcagacacg atggctgcgg
     1081 tcgtgcccgt gctggccgcg gtgtggtgcc gctcggtggg aaccttctgg acggtggaag
     1141 ttcaccagct cgacggcggc acagcgcccg gaacggtcgt ggactggatc agctctggtg
     1201 tccccatctc tcagccggag cccgacgcgt tggcccgcgg cttgctcgcc gaacacggcc
     1261 tgcagctgtt ccccaattca tcagttggcc cctgcaccta cagcaggcac ggcattggct
     1321 acgtatgcac gaacgctgag ctgcttaaac tagcccaggt ggcgcgggat gacgccgccg
     1381 acatcggagc ggaccccgtg ggcctggcca cacagtggtc tgccgccgga ttccctgccg
     1441 acgccgccgc gagctgcata cgcgcgggaa tccctacacc gcagacggcg cagcaaacag
     1501 ttcgctcgaa actttg
//
LOCUS       DASVXZ010000433         5582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1570248, whole genome shotgun sequence.
ACCESSION   DASVXZ010000433 DASVXZ010000000
VERSION     DASVXZ010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5582
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1570248"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1544
                     /locus_tag="VF788_08945"
     CDS             <1..1544
                     /locus_tag="VF788_08945"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEX8934302.1"
                     /translation="ERTPPLLIHEGEGFRLERLPLGSRVIYPPESLPGIVDLEYAIRH
                     ALLNPHGSEPLPQLLRRGMRLTIVFDDLSLPLPPMRTPDIRQRVIEQVLEMAAAAGVD
                     DVELIAANSLHRRMTPAELKRTVGERVFRAFSPDHLRNHDAENPDGLLHLGTTAHGED
                     VEINRRAAESDLIVYVNITLTAMSGGSKSVAVGLASYASLRHHHNVHTLRHSRSFNDP
                     PNSAMHHSYDRMADLIAGHVPVFTVETTLNNEPFPTALRFLTRREWEWNLTDQASYLA
                     IKRSNDLATPKLRRRIWQATEAPYGVTGVHAGAPSQVHPHTLAAVHRQQLTEVHGQAD
                     VAIFGLPYICPYNVNSIMNPILVMSLGLGYFFNLYRGKPIVRQGGVAIFYHPMPHEFH
                     PVHHPSYIDFYELLAETTDPVMLETKYEKQFATDPWYTHLYRTSYAYHGVHPFYMWYW
                     GAHAMQHLDDVIFIGGDRSTTARLGFRAASSLADALELARDTVGRDPQISYLHAPPMV
                     LADVR"
     gene            1541..2512
                     /locus_tag="VF788_08950"
     CDS             1541..2512
                     /locus_tag="VF788_08950"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX8934303.1"
                     /translation="MNRPTRSLREEVRLLRHGRDWRGRARVPRSAQPGELPEAYDDFP
                     TAWARTAAAGTVRHALQRGVLKPVIWSQTRPMVHGREYLDGIRGPAVFVANHSSHLDT
                     PLVLGSLPPRITKKLAVGAAADYFFDSRTIAAATTLLFNAFPVDRRASRRSRSLAAEL
                     VEDGWSLLLYPEGTRTVDGWLTAFKLGAAQLCAMKRVPAVPIALRGTFAAMPRGRHWP
                     RPGRPRVTVRIGRPLHIGADESVPEFRVRLVRAVATLWAEDDLGWYRALRAAADDSLA
                     LPTGSRSVLPTTSSGRPAEDHDIAPWRRVWEATRPPAEDGPRQVWRD"
     gene            complement(2566..2823)
                     /locus_tag="VF788_08955"
     CDS             complement(2566..2823)
                     /locus_tag="VF788_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3039 domain-containing protein"
                     /protein_id="HEX8934304.1"
                     /translation="MSTPTQTLPEVDTRPEGTDTTGDDTPKMFHYVRKDKIAESAVMG
                     SRVVALCGETFPVTRAPKPGSPVCPECKEIYESMPKGGDAH"
     gene            complement(2858..3208)
                     /locus_tag="VF788_08960"
     CDS             complement(2858..3208)
                     /locus_tag="VF788_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007033600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3099 domain-containing protein"
                     /protein_id="HEX8934305.1"
                     /translation="MRDPHEQGRRRNDAAVLITAAEPSYAEQYATRRRKYAILMSARI
                     PCLVLAGVFYQTWWLALTFVVLSVPLPWMAVLIANDRAPRKAEHVNRLGHGLEARDLP
                     QRELESGTHPVIDG"
     gene            complement(3242..3805)
                     /locus_tag="VF788_08965"
     CDS             complement(3242..3805)
                     /locus_tag="VF788_08965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010226040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HhH-GPD-type base excision DNA repair protein"
                     /protein_id="HEX8934306.1"
                     /translation="MLSQDLPADALLERDPLALLLGMLLDQQVPMERAFAAPYQLQQR
                     LGHDLDVHELAGYDRDALAELFAKPPALHRYPRSMAVRVQDICQALVERYDGDVTGLW
                     RNVPDARELFDRLIALPGYGMQKAQIFLALLGKQRNVKPAGWRETAGPYGDEGVFRSV
                     ADVTDADSLAKVREHKQQVKAAAKAKK"
     gene            complement(3860..4435)
                     /locus_tag="VF788_08970"
     CDS             complement(3860..4435)
                     /locus_tag="VF788_08970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934307.1"
                     /translation="MGQIGLLSGSADRAERISQLLRDAGADPMVVTDPAALPGEPGGD
                     GLDFYVQLPVTIHPDGDTAVARVGSFLSAGLLARFSAVDRVLPVLAPGATVVLVSGNT
                     PDEASLPDDQHSRLALLHLLAHAARAELATKHVEVKVISSQRSDQEIVHYALGGGEDS
                     PPHPDLQDRARAATAYQDWRTEVMGLVGIDI"
     gene            complement(4603..4899)
                     /locus_tag="VF788_08975"
     CDS             complement(4603..4899)
                     /locus_tag="VF788_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934308.1"
                     /translation="MTTSETMTEVTRRSQEAFSSAVQIWAESLQRFVGLLPTPEAKVP
                     SADEVVDKAFDFAAQALTTQREFTKSMLAATRSAASSAAWIAQGATKNTASKKT"
     gene            complement(4985..5395)
                     /locus_tag="VF788_08980"
     CDS             complement(4985..5395)
                     /locus_tag="VF788_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934309.1"
                     /translation="MQSADGGAENSDAWQAQLGPLGAFIRAQRQLADLSLREMAALTQ
                     ISNAYLSQVERGLHQPSLTVLRAIANALGLTTEQLLAKAGWMQPGPNEAPADVPTEPS
                     ASPEDSIRADPRLTDAQREALLGVYRSFVEGKAE"
BASE COUNT          918 a         1922 c         1786 g          956 t
ORIGIN      
        1 acgagcggac cccgccgctg ctgatccacg agggcgaggg gttccggctg gagcgcctgc
       61 cgctgggtag ccgggtgatc tacccgcccg aatcactgcc cggcatcgtc gaccttgagt
      121 acgcaatccg ccacgccctg ctgaatccac acggcagcga accgctgccg cagctactcc
      181 gtcgcggtat gcggctgacg atcgtgttcg atgacctgtc gttgccgctg ccgccgatgc
      241 gcaccccaga tatccggcag cgggtgatcg agcaggtcct ggagatggcc gccgccgcag
      301 gggtggacga cgtcgagctg atcgcggcca actcgctgca ccggaggatg acccccgcgg
      361 agctcaaacg caccgtcggc gagcgggtct ttcgcgcctt ctcccccgac cacctgcgca
      421 accacgacgc cgagaacccc gatggtctgc tccacctcgg caccacggca cacggcgagg
      481 acgtggagat caaccggcgg gccgccgaga gcgacctgat cgtctacgtc aacatcaccc
      541 tcaccgcgat gagcggcgga tcgaagtcag tggcggtcgg cctggccagc tatgccagcc
      601 tgcgccatca ccacaacgtg cacacgttgc ggcattcgcg ctcgttcaac gatcccccca
      661 actccgcgat gcatcactcc tacgaccgga tggccgacct catcgccggc catgtaccgg
      721 tgttcaccgt cgagaccacg ttgaacaatg aaccgtttcc cacagcgctg cgcttcctca
      781 cccgccgcga gtgggagtgg aacctaaccg accaggccag ctacctggcg atcaagcgga
      841 gcaacgactt ggcgaccccg aagctgcggc ggcggatctg gcaggccacc gaggcgccct
      901 acggcgtcac cggggtgcac gccggcgctc cgagccaggt gcatcctcac actctggcgg
      961 cggtgcaccg ccaacaactc accgaggtgc acggccaagc cgacgtggcg attttcggct
     1021 tgccctacat ctgcccgtac aacgtgaact cgatcatgaa cccgatcctg gtgatgtcgc
     1081 tgggactggg ctacttcttc aacctctacc ggggcaagcc gatcgtccgg caaggcgggg
     1141 ttgcgatctt ctaccacccg atgccgcacg agttccaccc ggtgcaccat cccagctaca
     1201 tcgacttcta cgagctgctc gccgagacga cggatccggt gatgctggaa accaagtacg
     1261 aaaagcagtt cgctaccgat ccctggtaca cccacctgta tcggaccagt tacgcctatc
     1321 acggagtgca cccgttctac atgtggtact ggggagcgca cgcgatgcag cacctggacg
     1381 acgtgatctt catcggcggt gaccggtcga ccactgcgcg gctgggcttc cgggcggcat
     1441 ccagcctggc cgacgcgctg gaactggcgc gggacaccgt cggtcgtgat ccgcagatca
     1501 gctacctgca cgccccgccg atggtgctgg cggacgtgcg atgaaccggc cgacccgcag
     1561 cctgcgcgag gaggtgcggc tgctgcggca tggccgggac tggcggggcc gggcccgggt
     1621 accccgttcg gcgcagcccg gggaattgcc ggaggcctac gatgacttcc cgaccgcgtg
     1681 ggctcgaacc gccgctgccg gaacggttcg tcacgccctg cagcggggcg tgctcaagcc
     1741 ggtgatctgg agccagaccc gaccgatggt gcacggcagg gaatacctgg acggcatccg
     1801 cggcccggcg gtcttcgtcg ccaatcactc cagccacctg gatacccctt tggtcctggg
     1861 ttcgctgcca ccgcgaatca ccaagaagct cgccgtcggg gcggccgccg actacttttt
     1921 cgattcccgg accatcgccg cggccacgac cctgctgttc aacgcctttc cagtggatcg
     1981 gcgggcatcg cgacggagcc gcagcctggc tgccgagttg gtcgaggacg gttggagcct
     2041 gctgctgtac ccggagggca cccggacagt ggatggctgg ctcaccgcgt tcaagctggg
     2101 tgcggcacag ctgtgcgcga tgaagcgcgt gcctgcggtg ccgatcgcgc tgcgcggcac
     2161 gttcgccgcg atgcctcgtg gccggcactg gccgcgccca ggccgtccgc gggtcaccgt
     2221 ccggataggg cggccgctgc acatcggagc ggacgagtcg gtgcccgagt tccgcgtcag
     2281 gctggtgcgt gcggtcgcca cgctctgggc cgaggacgat ctcggctggt accgtgccct
     2341 gcgggcggca gcggacgact cgctggcgct acctaccggt tcccgcagcg tgctgcccac
     2401 tacctcatcc ggccggcccg ctgaggatca cgacatcgcc ccgtggcgcc gggtctggga
     2461 agccacccgg ccgcctgccg aggacggtcc ccgccaggtg tggagggact gatcagaggc
     2521 tcagtgcttc ctgaggccac cgctgggccc ggccgaccaa ggagatcagt gcgcgtcgcc
     2581 gcccttcggc attgactcgt agatttcctt gcactccggg cacaccggcg aaccgggctt
     2641 tggcgcgcgc gtcacgggga acgtctcacc gcacagggcc acaactcgag aacccatcac
     2701 cgcactttcg gcgatcttgt ccttgcgcac gtagtggaac atcttgggcg tgtcgtcacc
     2761 tgttgtgtcg gtcccctccg gccgggtgtc gacttcgggc aacgtttgag tcggcgtgct
     2821 caccactcca tgatgccgca ccacgtgcgc ggccgaatca cccgtcgatg actgggtggg
     2881 tcccactttc cagctcgcgc tgcggaagat cgcgcgcctc gagtccgtgg cccagcctat
     2941 tgacgtgctc agccttgcgc ggcgcgcggt cattggcgat cagtaccgcc atccatggca
     3001 gaggcactga cagcaccacg aaggtcagcg caagccacca ggtctggtag aagacaccgg
     3061 ccagcacgag gcatggaatg cgggccgaca tcaggatcgc gtacttgcgt cgacgggtgg
     3121 cgtattgctc ggcataagag ggttccgccg ccgtgatcag tacagcagca tcgtttcgcc
     3181 gacgaccctg ctcatgtgga tcccgcacgc cttcacgtcc cgactcgatg ctcctgaccc
     3241 cttacttctt ggctttcgcc gccgccttca cctgctgctt gtgctcgcgg accttggcca
     3301 gcgagtcggc atcggtcaca tcggcgactg atcgaaatac accttcatcg ccgtaggggc
     3361 cagccgtctc gcgccagcct gctggcttca cattacgctg cttgccgagc aacgccagga
     3421 agatctgcgc tttctgcatc ccgtaacctg gcaacgcgat cagccggtcg aataattcgc
     3481 gggcatccgg cacattgcgc cacaaacctg tcacgtcgcc gtcgtaccgt tcgacgagtg
     3541 cctggcagat atcctgcacc cgcaccgcca tcgaccttgg gtagcggtgc aatgccggcg
     3601 gcttcgcgaa cagctcggcc aacgcgtcgc ggtcatagcc ggccagctca tgaacgtcca
     3661 gatcgtgacc taggcgttgc tggagctggt agggcgcggc aaatgcccgt tccatcggca
     3721 cctgttgatc gagcagcata cccagcagca atgccagcgg atcccgctcc agcaacgcat
     3781 ctgccggcag gtcctggctc aacatcaagg ccaccgacca cctcccacgg cggtgtgaat
     3841 tatccgcgga tctgtccgat cagatatcga taccgaccaa gcccatcacc tcagtgcgcc
     3901 agtcctggta ggcggtggcc gcccgggccc gatcctgaag atccggatgg ggtggcgaat
     3961 cctcaccgcc gcccagcgcg taatgcacga tctcctggtc gctgcgctgg ctgctgatta
     4021 ccttgacctc gacgtgtttg gtagcgagct cggcgcgggc ggcgtgcgcc aacaaatgga
     4081 gcagggcaag ccgggagtgc tggtcgtcgg gcaacgacgc ctcatccgga gtgttgccgg
     4141 acaccaacac cacggtcgcg ccgggcgcca gtaccgggag cactcgatcg accgcgctga
     4201 accgggctag caggcccgcg gacaggaacg agccgacgcg cgcgacggcc gtgtcgccat
     4261 cggggtggat ggtgaccggc agctggacgt agaaatcgag tccgtcaccg ccaggctcac
     4321 ccggcaacgc cgctgggtcg gtgacgacca tggggtcggc gccggcatcc cgcagcagtt
     4381 gggaaatccg ttctgcccga tccgccgaac cactgaggag cccgatctgc cccatcgacc
     4441 ctcctcctcc agcgcgcaca cggatggtga atcgtgcgtc agctactcgg cgtcccaagc
     4501 ttcatcgtag gggccggcgt gagggcctgg cgagggcgga gcggggttgc gggcaggagg
     4561 tcccccgaac ggctgcccgc ggagttcgcc ggggagtgtc cctcaggtct tcttcgaggc
     4621 ggtgttcttc gtcgcgccct gggcaatcca ggctgcgctg cttgcggccg accgggtagc
     4681 agccagcatg ctcttggtga actcacgctg tgtggtcagg gcctgcgcgg cgaagtcgaa
     4741 tgccttgtcc acgacctcgt cggcgctggg taccttcgcc tccggggtcg gcagcaggcc
     4801 gacgaatcgc tgaaggctct cggcccaaat ctgcaccgca ctggagaagg cttcctgact
     4861 gcggcgagtc acctcggtca tagtctccga tgtagtcatc gtcgtccctt cacttatgct
     4921 gtcaggggtt gtgatcgcca aagtacgcag gggtgataac tatgtcaagc gcacctcgtg
     4981 gccgtcactc agccttaccc tcgacgaagc tgcggtacac cccgagcagc gcctcgcgct
     5041 gtgcgtcggt gagccgcgga tcagcacgga tgctgtcctc cgggctggca gacggctcgg
     5101 tgggaacatc agcaggtgcc tcgttcggcc cgggctgcat ccatcccgcc ttggccagta
     5161 gctgctcggt ggtcagcccc agcgcgttgg cgatggcgcg caacaccgtc agtgagggtt
     5221 ggtgcaggcc ccgctcgacc tggctgaggt atgcgttcga gatctgagtc agggccgcca
     5281 tctcgcgcag cgataagtcg gcgagttgcc gctgtgcgcg gatgaacgcc ccgagcggcc
     5341 ctagttgcgc ctgccaggca tcggagttct cggcgccgcc atctgcactc tgcatggctc
     5401 acatcatgcc gcgtccagcg ccggatgcgg catgatgcga gccgctgtca gtcctggagc
     5461 acatagctgc ccggagcgga ctccagcggc ggatgcatcg cgctgcccgt ggcaggcgga
     5521 gtgcgctgct ctcccgcgcg cttggctatc cacggcgtcc agtcaagcca ccaggatttg
     5581 tc
//
LOCUS       DASVXZ010000434         2621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_315014, whole genome shotgun sequence.
ACCESSION   DASVXZ010000434 DASVXZ010000000
VERSION     DASVXZ010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315014"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..464
                     /locus_tag="VF788_08985"
     CDS             228..464
                     /locus_tag="VF788_08985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934310.1"
                     /translation="MSAALNFSELDQNVELLPARTLLSTFSRDVVGSTGGASGGVSGN
                     TVFGNLGDTSAAVVNGNPMGNVGNFVSGFVSGGR"
     gene            complement(539..1237)
                     /locus_tag="VF788_08990"
     CDS             complement(539..1237)
                     /locus_tag="VF788_08990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934311.1"
                     /translation="MTLLDVTGLTAGYGRVQVLQGVDVTVAGNEIVALVGSNGAGKTT
                     LLRAVCGLVAPIDGRIRFAGQDITGQRVESVVRRGLAHVPEGRRLFAGLSVRDNLRLG
                     GWALRAADIDRVLSLFPQLGTRLNQVAGTLSGGEQQMCAIARGLMSRPKLIMIDELSL
                     GLAPLVVDEILARLPDIAAGGTAVLLVEQDVDAALSVSTRGYVLETGTIALSGTSPQL
                     RADPRIQRAYLGEL"
     gene            complement(1234..1974)
                     /locus_tag="VF788_08995"
     CDS             complement(1234..1974)
                     /locus_tag="VF788_08995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005450226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8934312.1"
                     /translation="MLETRALTRRFGALRALSSVSLSVQPGTILGVIGPNGAGKSTLI
                     NVITGHLRPTAGTVLIDGTDLTGAAPWRIAHAGVARTFQIVKPFRGLTVRENVAISAM
                     YGHARAATKRGAFERADGVLESLALTPLARRGPAELSVGDARRLELARALAARPRLLL
                     LDEVMAGLRAAEVETMVGLIKSLRADGVTVLVVEHMIKVIAAVSDEICVLHHGEVLTC
                     GAPQAVLSDPQVIKAYLGTRYTHPDGQR"
     gene            complement(2010..>2621)
                     /locus_tag="VF788_09000"
     CDS             complement(2010..>2621)
                     /locus_tag="VF788_09000"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX8934313.1"
                     /translation="MREVVTNLGPLTGGGAGITVPTVAGRGTPWLGNDGFYLLFLALA
                     VLAVAAAVLISRSRFGYGLRAINQDEDAAAAAGVNTTRAKVAALAISAAITGLVGSAY
                     AFQQITIYPQRLFDVDITVTMIVMVVIGGAGTVLGPLVGAVGLQFVSEYLRQAYPQEH
                     ILVLGAVIVLVVLLFPAGLLTAARDAVSERRVSPLETIRTYRL"
BASE COUNT          494 a          894 c          835 g          398 t
ORIGIN      
        1 caagcatcgg ctgtcgatac catgtcgcca agcagtggac gcgtgaacta caagtccatt
       61 tcgcatcatg caaagtgagt agattttgtc actcaagatg atgagatcgc agggtcttac
      121 tacgattgag tgactggccg acgggaccgg aacaatttag tctgaccaga gcgagggggg
      181 aatctacaaa tactacgtga cctcgcttgt gaactcaagg aggatcgatg tctgctgccc
      241 tgaatttctc ggagcttgac cagaacgtgg agctactgcc agcccgtaca ctattatcga
      301 catttagccg ggatgtcgtc ggcagcacgg gtggcgcgag cggcggcgtc tctggcaaca
      361 ccgtattcgg aaacctcggt gacacgtccg ccgcagtcgt caacggaaac ccgatgggca
      421 acgtcggcaa ttttgtcagc gggtttgtct ccggcggcag atgattcggc acaggcttgc
      481 agcggagagg atcattgctg cgccgcttta acctgtcagc atgataattg caagcacgtc
      541 agagttcgcc caggtaggcg cgttggattc gcggatcggc acggagctgc ggcgatgtgc
      601 cggacagagc gatcgtgccg gtctccagca cgtagccacg agtggacacc gacaaggcgg
      661 catccacgtc ctgctcgacg agcaggacgg cggtgccgcc agcagcgata tccggcagcc
      721 tggccaggat ctcgtccacc accagtggcg ccagtcccag cgacagctcg tcgatcatga
      781 tcagcttggg ccggctcatc aggccgcggg caatcgcaca catctgctgc tcaccaccag
      841 aaagggtgcc ggcgacctgg ttgagccgag tccccaactg ggggaacagc gagaggaccc
      901 ggtcgatgtc ggcggcgcgg agagcccagc cgcctagccg aaggttgtcc cgcaccgaca
      961 agccggcgaa cagtcgccgg ccctcgggaa cgtgcgcgag gccccgccgg accaccgact
     1021 ccacccgctg cccggtgatg tcctggccag cgaaccggat ccggccatcg atcggggcaa
     1081 ccaggccgca gacggcccgc agcagggtgg tcttgccggc accgttcgag ccgaccagcg
     1141 cgacgatctc gttgccggcg accgtcacgt caacaccctg cagtacctgc acgcgcccat
     1201 aaccagcggt caatccggtc acgtccagca gcgtcaccgc tggccatccg gatgggtgta
     1261 gcgggtaccg aggtaggcct tgatcacctg cggatcggac agcaccgcct ggggcgcccc
     1321 gcaggtgagg acctcgccgt ggtgcagcac gcagatctcg tcgctgaccg ctgcaatcac
     1381 cttgatcatg tgctccacca ccaggaccgt gacgccgtcg gctcgcaacg acttgatcag
     1441 cccgaccatg gtctcgacct ccgcggcgcg caacccggcc atcacctcat ccagcagcag
     1501 cagccgcggg cgggccgcca gcgcccgggc cagttccaga cgtcgcgcat cgccgacgga
     1561 cagctcagcc ggaccccgcc gcgccagggg cgtcagcgcc aacgactcga gcacgccatc
     1621 ggcccgctcg aacgccccac gcttggtagc ggcccgggcg tggccgtaca tcgcggagat
     1681 cgccacgttc tcccgcaccg tcagaccgcg gaacggcttg acgatctgaa aggtccgggc
     1741 caccccggcg tgcgcgatcc gccatggcgc ggcgccggtc agatcagtgc catcgatcaa
     1801 tacagtgcca gcggtcgggc gcagatgccc ggtgatcacg ttgatcagag tggacttgcc
     1861 tgcgccgttc ggaccgatca ctcccaggat cgtgccgggt tgcacggaca gcgacacgct
     1921 cgacagggcc cgcagcgcac cgaaccggcg agtcagggca cgggtctcca gcatcgggtc
     1981 tttcccgggc gcggtttgct ccggcgctgt cacagccggt aggtccggat cgtctcgagc
     2041 ggggagaccc tgcgctcgga caccgcgtcc cgggcagcgg tgagcagacc agctgggaac
     2101 agcagcacga cgagcacgat caccgcaccg agcaccagga tgtgctcctg cgggtaggcc
     2161 tgccgcaggt actccgagac gaactgcagc ccgaccgcgc cgaccagcgg cccgaggacc
     2221 gtgccggctc ccccgatcac caccatgacg atcatcgtta ccgtgatgtc gacatcgaac
     2281 aggcgttgcg ggtagatagt gatctgctgg aacgcatacg ccgagccgac cagtccggtg
     2341 atcgcggccg agatggccaa tgctgccacc ttggcccggg tggtgttcac cccggccgct
     2401 gcggcggcgt cctcgtcctg gttgatcgcc cgcagcccgt agccgaaccg gctgcgggag
     2461 atcaataccg ccgccgccac ggccagcacc gccagggcca gaaagagcag gtagaaaccg
     2521 tcgttgccga gccagggcgt accccggccg gccaccgtag gcacggtgat cccggcaccg
     2581 ccgccagtca gcgggcccag gttggtcacc acctcccgca t
//
LOCUS       DASVXZ010000435         2067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_494235, whole genome shotgun sequence.
ACCESSION   DASVXZ010000435 DASVXZ010000000
VERSION     DASVXZ010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494235"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2067
                     /locus_tag="VF788_09005"
     CDS             <1..>2067
                     /locus_tag="VF788_09005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8934314.1"
                     /translation="PPVLAATLVELGSEVTNLYGPTETTIWSTAARLDTARLDTFGAP
                     TIGTPIGNTQAYVLDTQLCPVPIGVAGELYLAGRGLARGYLRRPGLTAARFIANPFGA
                     RGERMYRSGDLARWAPSGKLEYLGRADEQVKIRGFRIEPGEIETVLATHPGVSEVVVI
                     AREDQPGTKRLVAYLVAAAEQVPTTAELRAHLTHTLPDYMVPAVFVMLEALPLSVNGK
                     VNRKALPAPDQIIEPVAEYVAPRSATEQTLTAIWVEVLGVDRVGVQDNFFELGGDSIL
                     SIQVMSRVRVAFGVELSPRVLFIGPTVAGLAAAVAGSALSDLPPITVADRVGELPELP
                     LSFAQQRLWFLDQFAPGGAGYVSAFALRLRGELDPDALSVALSALVARHESLRTTFET
                     IEGRGVQVVHPPAPVVLPVQDLSECTPAERESELQRLLAVEADQGFDLARGPLLRVGV
                     VRLGAGEHVLTVAMHHIVTDGWSMGVLMRELVAFYNATRTGTPPQLPELTVQYVDYAL
                     WQREVLAGARMDTALDYWRNQLAGLPVLELPTDRPRPAVLSTAGALHQFIVPAQVTTH
                     LKELSRRQDGTLFMTLVAACQLLFSRYSGQDDIAVGTVVSGRERAELEGLIGFFVNTL
                     VLRSRVDDERSFTEFLTQVRETVLDALAHQQVPFERLVDELAPVRDTSRTPLFQAMVT
                     LQNALG"
BASE COUNT          308 a          685 c          712 g          362 t
ORIGIN      
        1 tgccaccggt gctcgcggcc acgctggtgg agttgggcag cgaggtcacc aacctctacg
       61 ggcccaccga gaccacgatc tggtcgaccg cggcccggct cgacacggcc cggctcgaca
      121 ccttcggcgc gcccaccatc ggcacaccga tcgggaacac ccaggcgtat gtcctggaca
      181 cccagctatg cccggtcccc atcggggtag ctggtgagct gtacctcgcc ggtcgcggcc
      241 tggcccgcgg ttacctgcgc cgtcccgggt tgaccgcggc ccggttcatc gcgaatccct
      301 tcggggcacg gggtgagcgg atgtaccgca gcggagacct ggcccgctgg gcccccagcg
      361 ggaagctgga gtacctcggt cgggccgacg agcaggtcaa gatccgcgga ttccggatcg
      421 aacccggcga gatcgagacc gtgctggcca cccatcccgg ggtcagtgag gtcgtggtca
      481 tcgcccgcga agaccagccc ggaacaaaac gcctggtggc ctatctggtc gcggcggccg
      541 agcaggtgcc cactactgct gagctgcgtg cccacctcac ccacaccctg cccgactaca
      601 tggtgcccgc ggtgttcgtg atgcttgagg ccttgccgtt gagcgtgaac gggaaggtga
      661 accgcaaggc cctgccagcc ccggaccaga tcatcgagcc ggtggccgag tatgtcgccc
      721 cccgcagcgc cactgagcag accttgactg cgatctgggt cgaggtgctc ggggtggatc
      781 gggtcggtgt ccaggacaat ttcttcgagc tgggtggcga ttccatcctg agtatccaag
      841 tgatgtcccg cgtccgggtc gccttcggag tcgagctctc acccagggtg ctgttcatcg
      901 gccccaccgt cgcagggctg gcggcagcgg ttgccggatc agcactctcc gatctacccc
      961 cgatcacggt cgccgatcgc gtgggcgagc tgcccgagtt gccactgtcg ttcgcccaac
     1021 aacgcctatg gttcttggat cagttcgcgc caggtggtgc gggatacgtg tcggcgttcg
     1081 ccttgcggtt acggggtgag ctggacccgg acgcgttgtc ggtggcgctg agcgcgctgg
     1141 tcgcccggca tgaatcgctg cggaccactt tcgagacgat cgaggggcgc ggcgtgcagg
     1201 tggtgcatcc gcctgcaccg gtggtgttgc cggtgcagga tctctcggag tgcaccccag
     1261 ctgagcggga atctgagctg cagcggctgc tggccgtgga agccgaccaa ggcttcgatc
     1321 tcgcccgtgg gccgttgctg cgggtgggcg tggtacgcct gggcgcaggc gagcatgtac
     1381 tgacggtggc gatgcaccac atcgtgaccg atggctggtc gatgggtgtg ttgatgcgcg
     1441 agttggtcgc gttctacaac gccacccgca ccggaacgcc cccgcagctg ccggagttga
     1501 cggtgcagta cgtcgactat gcgctctggc agcgtgaggt gctcgccggc gcgcggatgg
     1561 acaccgcgct ggactactgg cgcaaccagc tggccgggct tccggtgctg gaactgccga
     1621 ccgatcggcc ccgcccggcg gtgttgagta ccgcgggcgc cctacatcag ttcatcgtgc
     1681 ccgcccaggt cactacccac ctcaaggagc tgagccggcg ccaggacggc acgttgttca
     1741 tgacgttggt ggcggcgtgc cagctgctgt tcagccggta ttccgggcag gacgacatcg
     1801 cggtgggcac agtggtgtcg ggccgtgagc gcgccgagct cgaagggttg atcgggttct
     1861 tcgtcaacac cctggtcctg cgctcccggg tggacgatga gcggagcttc accgagttcc
     1921 tcacccaggt ccgggaaacc gtgctggacg cgctggccca ccagcaggtc cccttcgaac
     1981 gtctggtgga tgaactcgcc ccggtccggg acaccagccg gacgcccctg ttccaagcca
     2041 tggtcacctt gcagaacgcc ctcgggc
//
LOCUS       DASVXZ010000436         4350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_853569, whole genome shotgun sequence.
ACCESSION   DASVXZ010000436 DASVXZ010000000
VERSION     DASVXZ010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4350
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_853569"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..625)
                     /locus_tag="VF788_09010"
     CDS             complement(<1..625)
                     /locus_tag="VF788_09010"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX8934315.1"
                     /translation="MSSFWQATIYGLLQGGLLAMIAVGFSLVWGVMNVINLSHGAYVL
                     LGAYTAWELHAAWGLDPLLGAVAGGIAMFVVGYAVQRLLVNRIVNAPIFLTLLLTFGL
                     QLVLVQGMAVLFSADYRSIATSYASESFGLRPLGLGDVRVPYGRLLAFGVAAAATAAL
                     VLFARRSRTGIAILATGMDRTAARLMGINARHVYALTAGIAAALAGAA"
     gene            complement(622..1866)
                     /locus_tag="VF788_09015"
     CDS             complement(622..1866)
                     /locus_tag="VF788_09015"
                     /inference="COORDINATES: protein motif:HMM:NF024825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX8934316.1"
                     /translation="MTTRAGHLRRINVLAVAAALALTLSACDSKGTQNQAGTGDTLNL
                     GASMSLSGALEKEGKLTQQGYDYCVNTINAKGGLKVGAQTLRLHIDYQDDQSQPDTAG
                     QLVDQFNDKGYKLILGPYGSATTGAAMPVIERNGQVMVDSSGADDKLFTKGYQRTFAV
                     LSPASVYAASIVNAISELATPKPGSIVFLSADDGFSKTVATAGEARAKDLGFTVLPGQ
                     QFPAGATDVSSALTKVKPSKPDVIVGSVHLAEGIAIVKQAAELGVKPAGGFAETVAPP
                     TPDFVRTLGSKANGVLSSSQWVPEVKGSEAFFGSATDYRDGFRAAVGHEPEYHNAEAT
                     AACLAMVLAVREAGSTDPDKVRNALAALDEPSFFGPLKFDDKGENVTKPMSVIQIQDG
                     KLVTVWPKDQAAGRLVWPGASG"
     gene            complement(1955..2935)
                     /locus_tag="VF788_09020"
     CDS             complement(1955..2935)
                     /locus_tag="VF788_09020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934317.1"
                     /translation="MGRLLVLLTTALLCIAGTGLASAAVAPIIHQSSARPATVFPRGS
                     IPPSAAGEPNTGIRPAPATVSPSPTDSSLAADPTSASSVADRATVPVKVKQATQAVLP
                     NAQVGYEVFDRIDNTTLTSADADQQFAAMSVVKLLIALDVLSRNDWGAPDNGTQQELH
                     QMLANSDDQIANTLWTAGGGPAIVTRMTAMLRLDGTRPPEDPGEWGDTLITPHDMVTV
                     YRYITDQLPKSGQDLILGALSDTPKIAADGFDQYFGIPDGMPNTSWAVKQGWGTSGSH
                     AVMASTGLVGPDRRYVVVVLASAPGNSYSTLPAVVTAGAGALAGLVRAAP"
     gene            complement(3082..>4350)
                     /locus_tag="VF788_09025"
     CDS             complement(3082..>4350)
                     /locus_tag="VF788_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetate--CoA ligase family protein"
                     /protein_id="HEX8934318.1"
                     /translation="YLRRHPLAKLCRDGELVGCDMIAVSSGSTGEPTFWPRSVVDEFA
                     VATRFEQVFHDSFDAGHRTTLAVVCFALGSWVGGMYTASCCRHLATKGYPITVVTPGS
                     VVEEILRVVTALGPQFEQVVLLGYPPFLKGVIDAGRVRGVPWPDYHVKLVMAGEVFSE
                     EWRTLMGERLGGGNPCFDSASLYGTADAGVLATETPLSICIRRYLAEHPAAARELFGQ
                     ARLPTLAQYDPRSRLFEMHGETLLFTGDNGIPLIRYHIADSGALMSFGAMLAFLADHG
                     FDPITALRHDGAAGGLVIRELPFVHVFGRSQFTVSYYGANIYPENIAVGLERQPVASW
                     VTGKFVIEAREDAARDRYLAIAVELAPGATATEKIRDEITQSIAAQLCRLNSEFAHYT
                     PREHQLPRVTLHHSGDPEYFPPGVKHRYSR"
BASE COUNT          775 a         1438 c         1432 g          705 t
ORIGIN      
        1 cggcggcacc ggccagggcg gcagcgatgc cggcggtcag cgcgtagacg tgccgggcgt
       61 tgatgcccat cagccgggcc gcagtgcggt ccatcccggt ggccaggatc gcgatgccgg
      121 tgcggcttcg ccgggcgaac aagacgagcg cggcggtggc cgctgcggcc acgccgaagg
      181 cgagcaaccg cccgtagggc acccgcacgt cccccaagcc gaggggacgc agcccgaagg
      241 attccgaggc ataggacgtc gcaatcgagc ggtagtccgc gctgaacagc accgccatgc
      301 cctgcaccag caccagctgc aacccgaagg tgagcagcag ggtcaagaag atcggcgcat
      361 tgacgatccg gttgaccagc agccgctgca cggcataccc gacgacgaac atggcgatgc
      421 caccggccac cgcgccaagc agcgggtcca gcccccacgc ggcgtgcagc tcccatgcgg
      481 tgtacgcgcc gagcagcacg taggccccgt gggacaggtt gatgacgttc atcacgcccc
      541 agaccaggga gaaccccacc gcgatcatcg ccagcaggcc gccttgcagc agcccataga
      601 tggtggcctg ccaaaacgag ctcacccgct ggcgcccggc cagaccaacc ggcccgcggc
      661 ctgatccttc ggccagactg tgaccagctt gccgtcctgg atctggatca ccgacatcgg
      721 cttggtgacg ttctcgccct tgtcatcgaa cttcagcggg ccgaagaacg acggttcatc
      781 caaagctgcc agggcgttac gcaccttgtc cgggtcagtc gagccggcct cgcgcaccgc
      841 gagcaccatc gccaggcagg ctgcagtggc ctcggcgttg tggtactccg gctcgtgacc
      901 gaccgcggcc cggaaaccgt cgcggtaatc ggtcgcgctg ccgaagaaag cctcggagcc
      961 cttgacctcg ggcacccact ggctggagct gagtaccccg ttagccttgc tgcccagcgt
     1021 ccggacgaaa tccggagtcg gcggggcgac cgtctcggcg aagccgccag ccggcttgac
     1081 gcccagttcg gcagcctgct tgacgatcgc gatcccttcc gccagatgca ccgagccgac
     1141 gatcacatcc ggcttgctcg gcttgacctt ggtcagcgcg ctggacacat cggtggcgcc
     1201 ggcggggaac tgttgtcccg gcagcacggt gaagcccagg tccttggccc gcgcctcacc
     1261 ggccgtggcc acggtcttgg agaaaccgtc atcggcggaa aggaacacga tgcttcccgg
     1321 cttgggcgtg gccagctcgc tgatcgcgtt gacgatcgac gcggcgtaca ccgacgcagg
     1381 agacagcacc gcaaaggtgc gctggtagcc cttggtgaac agcttgtcgt cggcgcctga
     1441 gctgtccacc atcacctggc cgttgcgttc gatgaccggc atggccgcgc cggtagtggc
     1501 cgagccgtac gggccgagga tcagcttgta gcccttgtca ttgaattggt ccaccagctg
     1561 gccggcggtg tccggctggg attgatcgtc ctggtagtcg atgtgcagcc gcagggtctg
     1621 cgcgccgacc ttgaggccac ccttggcgtt gattgtgttg acgcagtagt cgtagccctg
     1681 ctgggtgagc ttgccttcct tctccagcgc gccgctcaac gacatcgatg cacccagatt
     1741 gagggtgtca ccggtccccg cctggttctg cgtgcccttc gagtcacaag cggagagcgt
     1801 cagggcgagc gctgcggcga cggccagcac attgatccgc cggaggtgac cagcccgtgt
     1861 cgtcatggtg tgttcgcccc cgtgctcgcc aatcccaacg tgtaggtgca gagcataggc
     1921 ccggactacg accgggccgg gctgaccaag tcggtcaggg cgcggcgcgg accaatcccg
     1981 ccaatgcacc cgctccggcg gtgactaccg ctggcaacgt ggagtacgag ttccccggcg
     2041 ccgaggccag aacgaccacc acataacgcc gatccggccc gacgagccca gtgctggcca
     2101 tcactgcatg ggaaccgctg gttccccagc cctgcttgac cgcccagctg gtgttcggca
     2161 tcccgtccgg gattccgaag tactgatcga atccgtctgc ggcaatcttt ggcgtgtccg
     2221 atagcgcacc gaggattaag tcctggcctg atttgggtag ctgatcggtg atgtagcggt
     2281 aaacagtcac catgtcgtgc ggtgtgatca gcgtgtcacc ccactcaccg ggatcctcag
     2341 gcggccgggt gccgtcgagc cggagcatgg cggtcattct ggtcacgatg gcgggaccac
     2401 cgccggcggt ccacagcgtg ttggcgatct ggtcgtcgct gttagccagc atctggtgca
     2461 gttcctgctg ggttccgttg tccggggccc cccaatcgtt cctggacagg acgtccagcg
     2521 cgatcaacaa cttgaccacc gacatggcgg cgaattgctg gtcggcatcc gcactggtca
     2581 gcgtggtgtt gtcgatccgg tcgaagacct cgtaaccgac ctgcgcgttc ggcaggactg
     2641 cctgtgtcgc ttgcttcacc ttcaccggca cggtggcccg gtctgcaacg gaggacgccg
     2701 acgtggggtc cgcggccaga gatgaatcgg tcggtgacgg gctgaccgtg gccggcgcag
     2761 gccggatgcc ggtgttgggc tcgccggctg cggacggggg gatgctgccg cgcgggaaca
     2821 cggttgccgg ccgcgcgctc gactgatgaa tgatcggagc gaccgcagcc gacgctaacc
     2881 cggtaccggc aatgcagagc agcgccgtcg tcagcagtac caataggcgt cccatgcccg
     2941 gtacgtcgac cggaggcgtg cagctcttac taccttgagg aagttccccg gacattcaca
     3001 ggaaaattcc agttcgatgc ccagaaacgt cgcagcgcgc gagaatgtac gtaccaagag
     3061 taattcaata gcttggaaat atcagcggga gtaccggtgc ttgacgccgg gcgggaagta
     3121 ttctggatcg ccactgtggt gcagggtgac ccgcggaagc tggtgctctc gcggagtgta
     3181 atgggcgaac tcgctattga gccggcaaag ctgggcggcg atcgactgcg ttatctcatc
     3241 ccggatcttt tcggtggcgg tcgctccagg agcgagctcg acggcgatcg cgagataacg
     3301 atcacgggcg gcgtcctccc tggcctcgat aacgaacttg ccggtgaccc aagacgcgac
     3361 cggttgccgc tccagaccga cagcgatgtt ctccgggtag atgttcgcgc cgtagtagga
     3421 caccgtgaac tgcgagcgtc cgaacacgtg cacgaacggt agctcgcgga tgaccaaccc
     3481 cccagcagcg ccgtcgtgac ggagcgcggt gatcggatcg aagccatggt cggcgaggaa
     3541 ggccagcatc gcgccgaacg acatgagggc gccgctgtcg gcgatgtggt aacggatcag
     3601 cgggatcccg ttgtccccgg tgaacaacag cgtctcgccg tgcatctcga acagccggct
     3661 gcgcggatcg tactgggcaa gtgtgggcaa ccgcgcttga ccgaacagct cccgcgcggc
     3721 tgccgggtgt tcggccagat agcggcggat gcagatcgac agcggcgttt cggtggccag
     3781 cacgccagca tcagcggtgc cataaagcga ggctgaatcg aagcacgggt taccaccgcc
     3841 tagacgctcg cccatcagcg tgcgccactc ctcgctgaac acctcaccgg ccatgaccag
     3901 cttgacgtgg tagtccggcc acggcacgcc acggacccgg ccggcgtcga tgacgccctt
     3961 gaggaatggc gggtatccga gcaacaccac ctgctcgaac tgcggcccga gcgcggtgac
     4021 cacccggagg atctcctcca cgacactgcc cggggtgacc accgtgatcg ggtagccctt
     4081 ggtggccaga tgccggcagc agctcgcggt gtacatccca ccaacccaac tgcccagcgc
     4141 gaagcagacc acggccagcg tcgtccggtg gccggcgtcg aagctgtcgt ggaagacctg
     4201 ctcgaaccgg gtggccacgg cgaactcgtc aaccaccgac cgcggccaga aggtgggctc
     4261 cccggtggag ccggaagaca ccgcgatcat gtcgcagccc accagctcac catcgcggca
     4321 cagcttcgcc aacggatgcc gacgcaggta
//
LOCUS       DASVXZ010000437         7131 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_405477, whole genome shotgun sequence.
ACCESSION   DASVXZ010000437 DASVXZ010000000
VERSION     DASVXZ010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405477"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..1211)
                     /locus_tag="VF788_09030"
     CDS             complement(126..1211)
                     /locus_tag="VF788_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX8934319.1"
                     /translation="MHPLDDDLRAEVNRELAAFLQAKRDEAAQIDPQFVAAVDSLSEF
                     VLGGGKRLRPTFAWWGWRGAGGSPTDPQARAVLRAMSSLELIQACALVHDDLMDDSTT
                     RRGAPTMHVEFAVRHRAAGWLGTPERFGAATALLLGDIALAWADDMLRGAGLWPDQLT
                     RAYAVWQAMRTEVLAGQYLDVLTQACGDETPETALQIDRYKTAAYTVERPLHLGAAIA
                     GANPALIHAYRCFGADIGVAFQLRDDLLGMFGDPRVTGKPAGDDLREGKRTLLLAYGL
                     RAADEKRQTGAADVLRAAIGNPRVDADAVTEVRELLIELGAVAEVERRITTLTDSALR
                     ILHTTELEEPAGARLTELAAQATCRVH"
     gene            complement(1476..2027)
                     /locus_tag="VF788_09035"
     CDS             complement(1476..2027)
                     /locus_tag="VF788_09035"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEX8934320.1"
                     /translation="MRAREPARLTELTAAQLRERLDDALRIYVTAMRYPPGTAQHRSP
                     MWLEHMLRAGWLCVAAFEADTLVGIGYGYRGAPGQWWHDEVHRGLRIIDPAAAQRELA
                     DYFELTELHVHPDAQGRGIGTALLTELLSKVDAPRALLSTPEGPTRAWRLYRRFGFTD
                     LLRHYHFTGDSRDFAVLARTLPL"
     gene            2320..2769
                     /locus_tag="VF788_09040"
     CDS             2320..2769
                     /locus_tag="VF788_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAV_6107 family HEPN domain-containing protein"
                     /protein_id="HEX8934321.1"
                     /translation="MHAVAPLTPTTRLRYDSPSHYGSTRRYSPSTCALLDQARQGLLD
                     AEYATHPVERYAQAHVAALRAAAAVLAARTRPRRRAQPTSAWTLLTTVAPELAEWSAF
                     FAAASATRAAAQAGAHRLVTNRDADDMVRQAGQFLILARGSATRTIR"
     gene            2766..3539
                     /locus_tag="VF788_09045"
     CDS             2766..3539
                     /locus_tag="VF788_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEX8934322.1"
                     /translation="MNAPRSLIDYGRLLEVIGIEGELMLATAVSALPHAAQAEVPGCP
                     DFTLDKTLRHVGSVHRVARLWVRDGRRPERWQRSPADGDVVGFVRSGLNELLTELSLH
                     DPAEPCDTWWPADRTHGFWRRRMAHETTVHRVDVEAAAGGPVHEVDPELALDGIDEVL
                     FLWFGHRLGELRMSSPERGVVALSAGERQWLAIFEPGRSIARRVDEADARSADATVSG
                     DPMDLYLWSWGRLPDQSVQISGDQEAVARLWTLLRPATQ"
     gene            complement(3558..>7131)
                     /locus_tag="VF788_09050"
     CDS             complement(3558..>7131)
                     /locus_tag="VF788_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEX8934323.1"
                     /translation="IEEALKSGQLPAVVATSSLELGIDMGSVDLVVQIEAPPSVAAGL
                     QRIGRAGHQVGAVSRGVVFPKHRGDLVSCAVVAERMGEGAIEELRYPRNPLDVLAQQI
                     VAMVSLDMWHVDELAALVRRAAPFAELPESALHAVLDMLSGRYPSTAFAELRPRLVWD
                     RTTDELTGRPGAQRLAVTSGGTIPDRGMFGVFLAGSEKASRVGELDEEMVYESRVGDT
                     FLLGSTSWKIVDITHDRVIALPVPGEPARMPFWKGDAPGRPLELGRALGAFVRELSGA
                     GVDAARSRIEGVGLDAWAADNLLSYLHAQREAAGHVPDDRTVVVERFRDELGDWRMVV
                     HSPFGAQVNGPWALAIGARLRERRGVEAQVASADDGIVLRLPDSLDADGAEVAPTAED
                     VLFDPEEIEQLVIAEVGGSALFASRFRECAARSLLLPRRDPRRRTPLWQQRQRSAQLL
                     AVAARYEQFPVVLEAMRECLQDVYDLPGLRELMSEVRARRVRVVEVATPSPSPFARSL
                     LFGYVGMFLYELDAPLAERRTAALALDSTLLAELLGSEAIRELLDPEVLIEVEAQLQR
                     LDAERRVRDVEGAADLLRALGDLTELEAMQRGVAPEWLTELGAARRAIPVRIAGEQRW
                     IAIEDAGRVRDALGAPLPVGVPEVFTEPVTDPLGDLLLRYARTHGPFSATAAADRFGL
                     GIAVVGAVLDRMTRTGTVVRGELRPVELGGGGTEYCHAEVLRRLRRASLARLRAEVEP
                     VEQAALGRFLPAWHGIGSWDTSGRGAGPARRLRSASTPEDVLGVVEQLAGAPLPASAL
                     ESLLLPARLPGYSPALLDELTISGEVSWIGCGSLPGGDGWIALAPADLADLVLPDLDE
                     QLALTSLHRGVLRALGWDPAGGPAEGGALFFRQLADRTAQYQLAEGELAPSDSDVLTA
                     VWDLVWAGLLTNDSLAPLRALVSGRSPAHRPRRSAPRGRYARMRAGRPPTPSRSGPPT
                     AAGRWSLAPVSQSEPTRRAHARAETFLERHGVLTRGALDTERVAGGFAGVYKVLRVME
                     ESGRCRRGYVVEGLGAAQFAVPGAIDRLRAVGQPVDGITATVVLAATDPAQPYGAALP
                     WPSTLGEVRHRPGRKAGALAVLVDGAVVLYVERGGRSLLSFTEDTGRLRAAVSGLAGA
                     VAQGWLGSLSVERADGEAALGSALAELLRDAGFRATPRGLRLRA"
BASE COUNT         1139 a         2486 c         2424 g         1082 t
ORIGIN      
        1 acccgccgtc cggatcccag caggtggagt gccgcggaaa gcccggctag tccggcgccg
       61 accacgatga cgtgatcggt gggcccgggg acggtgcgca tggatggcac gttacgcgtg
      121 gtcgctcagt gcacccggca ggtggcctgt gcggccagct cggtcagccg ggcgccggct
      181 ggctcctcga gctctgtggt gtgcaggatg cgcaatgcag agtcggtgag cgtggtgatc
      241 cggcgctcca cctcggccac cgcgcccagc tcgatcagca gttcgcggac ctcggtcacg
      301 gcgtccgcgt ccactcgtgg gtttccgatt gcagcgcgca agacgtcggc agctccagtc
      361 tggcgtttct cgtcggcggc ccgaagaccg taggccagca gcagcgtccg cttgccctcg
      421 cgcaggtcat cgccggctgg tttgccggtg acccgagggt cgccgaacat cccgagcaag
      481 tcgtcgcgga gctggaaggc gacgccgatg tcagcgccga agcagcggta ggcgtggatc
      541 agcgccgggt tcgctccagc aatcgcggcg cccaggtgta gtgggcgttc aacggtatag
      601 gccgcggtct tgtaccggtc gatttgcagc gcggtttcgg gtgtctcgtc gccgcaggcc
      661 tgcgtgagga catcgaggta ctgaccggcg agcacctcgg tccgcatggc ttgccatacg
      721 gcatacgctc tggtcagctg atcaggccac aagcctgcgc cccgtagcat atcgtcggcc
      781 caggccagcg cgatgtcgcc gagcaagagg gcggtggcgg caccgaagcg ctccggtgtg
      841 cccagccatc cggctgcgcg gtgccggacc gcgaactcga catgcatcgt cggtgcgccg
      901 cgccgggtgg tcgagtcgtc catcaggtcg tcatgtacca gagcgcaggc ctggatcagc
      961 tccagggagc tcatcgcgcg gagcaccgct cgcgcctggg ggtcggtcgg cgagccgccg
     1021 gctcctcgcc aaccccacca ggcgaatgtt gggcgcagtc gtttgccacc gccgagcaca
     1081 aactcgctca gcgagtccac ggcggcgacg aactgtgggt cgatctgcgc ggcctcatcg
     1141 cgcttcgctt ggaggaaggc ggccagctcg cggttcactt cggcgcggag gtcgtcatcg
     1201 agcggatgaa tctgccggtt cttcgctagc ccgttgaggg aacgagtccg ggctcggcgg
     1261 gtggcattcc tctccgccat cgaacctcct gcgatcatgg tgagggcacc gcgtggccgg
     1321 tcctgcactc gctgtggatg ccgacgatag ggctactgcg cgccgacatg tgcccgggtt
     1381 cggccaccgg cgcgttccgg ttcagtttgg tcgccattcc ggcacccttg acgccgtctg
     1441 caaggcggcg gccttgacca accgagctgt gtgccctaga gcggcagcgt gcgagccagc
     1501 acggcgaagt cccgtgagtc accggtgaag tggtagtgcc gcagcaaatc ggtgaatccg
     1561 aatcggcggt aaagccgcca ggccctcgtc gggccctcgg gagtggatag caaagcgcgc
     1621 ggcgcatcca ccttggagag gagctcggtg agcagagccg tgccgatacc cctgccttgt
     1681 gcatccgggt gcacatgcag ctcggtcagc tcgaagtagt cggcgagctc acgttgcgcc
     1741 gcagcggggt cgatgattcg cagtccacgg tgcacttcgt catgccacca ttggccgggc
     1801 gccccacggt agccgtagcc gatgcccacg agggtgtctg cttcgaaggc ggcgacgcat
     1861 agccaccccg cccggagcat gtgctccagc cacatggggc tccgatgttg ggcggtgccg
     1921 ggtgggtagc gcatcgccgt gacgtagatg cgcagcgcat cgtctaaccg ttcgcgcagc
     1981 tgcgccgccg tcagctcggt cagcctggcc ggttcacggg cgcgcatcgc ggtcaccgtc
     2041 gagctcctgt gttggccggc gtcccggcga aacgtgtggt gtcaacgggg cgcacggctc
     2101 ccataagacc acgacgagac cacgacccgg catttttccg ggattggcac ttgacgcaac
     2161 cgagtctcaa ggggctaacc tggagtggtg tcgaacatat gttcgaacac gggtccggcg
     2221 gtggcacggg ggaagcgtgt cgccgccgga ctccgccggc ttccccacgg cggagtcgat
     2281 ccatgttgcc cattacgact cccgacccag gaggccgacg tgcacgctgt agctccgctc
     2341 accccaacga ccaggctgcg gtatgacagc cccagccact atggcagcac caggcgctat
     2401 tcgcccagca cgtgtgccct cctcgaccaa gctcggcagg ggctactcga cgcggagtac
     2461 gccacacatc cggtggagcg ctacgcccag gcacacgtcg cggcgctacg cgcggcggcc
     2521 gccgtgctgg cggcccgaac ccggccgcgc cgtcgtgccc agccgaccag cgcatggacg
     2581 ttgctcacga ccgtcgcgcc agaactcgcg gaatggtcgg cgttttttgc cgctgcttca
     2641 gccacccgcg cggccgctca ggccggtgca caccgtctgg tgacgaaccg cgatgccgac
     2701 gacatggtgc ggcaggcagg tcagttcctc atcctcgcgc ggggctcggc gacgaggact
     2761 atccgatgaa cgctcctcgg tcactgatcg attacggccg cctgttggag gttatcggga
     2821 tagagggcga actgatgctc gctacggcgg tatcagcact gccgcacgcg gcgcaggccg
     2881 aggtacccgg ctgtccggat ttcacgttgg acaagacatt gcggcacgtc ggcagcgtgc
     2941 accgggtcgc gcggctgtgg gtgcgcgacg ggcgtcgacc cgagcggtgg cagcgatctc
     3001 cggctgacgg cgacgtggtg ggcttcgtgc gcagcggcct gaacgagttg ctcacggagc
     3061 tgagcctgca tgatccggcc gaaccctgcg atacatggtg gcccgcggat cgcacccacg
     3121 gcttctggcg gcgtcggatg gctcacgaga ccaccgtgca ccgggtcgac gtggaagctg
     3181 cggctggtgg gccggtgcac gaggtcgacc cggagctagc ccttgacggc atcgacgaag
     3241 tgctttttct gtggttcggt caccgcctcg gtgaactgag gatgtcgtca cccgaacgcg
     3301 gggtggtggc tttatccgcc ggagaacggc agtggttggc aatcttcgaa cctggccgtt
     3361 ccatcgctcg gcgggtagac gaggccgatg cccggtctgc ggacgccacg gtgagcggtg
     3421 atcccatgga tctctaccta tggtcatggg gacgcctgcc tgatcagtcg gtccagatct
     3481 ccggtgatca ggaggctgtt gctcgactct ggaccctgtt gcggcctgca acgcagtgaa
     3541 ccaccctcgc taccgcatca ggcgcgtagc cgcagtccac ggggcgtggc gcggaatccg
     3601 gcatcgcgaa gcagctcagc cagcgccgaa cccagcgccg cttcaccatc tgcgcgctcg
     3661 acggagagcg aacccagcca accctgcgca accgcaccgg cgagaccgct taccgcggcg
     3721 cgcaacctgc cggtgtcctc ggtgaacgac aggagcgacc ggcccccgcg ttcgacgtag
     3781 agcaccacgg cgccgtccac gaggacggcc agcgctcccg ccttgcgtcc aggccggtgc
     3841 cttacctctc cgagggtgga tggccacggc agagcggccc cgtagggctg ggctggatcg
     3901 gtagcggcaa ggacaaccgt ggctgtaatg ccgtcgacgg gttggccgac ggcacgtaac
     3961 cgatcaatgg cacccgggac agcgaactgc gctgctccga gtccctcgac gacgtacccg
     4021 cgtcggcacc ggccggattc ctccatgacc cgaagcacct tgtaaacgcc ggcaaagcca
     4081 ccggcgaccc gctcggtgtc cagggcgcct ctggtgagta ccccatggcg ctcaaggaac
     4141 gtctcggccc gtgcatgcgc ccggcgggtg ggctcggatt gggataccgg tgccagcgac
     4201 caccgtccgg cggccgttgg cgggccgctt cgggaaggcg tcggaggtcg tccagcgcgc
     4261 atccgggcgt aacggccacg cggtgctgac cggcggggcc gatgtgctgg tgaacgaccg
     4321 gataccagtg ctcgcagtgg tgcaagcgag tcgttggtca gcaatcctgc ccacaccagg
     4381 tcccagactg ccgtgagcac gtcggagtca ctaggcgcca actcgccttc agcaagctga
     4441 tactgagcgg tccggtcggc aagttgccgg aagaacagtg cgccaccttc ggctggacca
     4501 ccggctgggt cccagcccag cgcccgcagc acgccgcggt gtaacgaggt gagggccagc
     4561 tgctcatcga gatcaggcag caccagatcg gccagatcgg caggagccag cgcgatccac
     4621 ccatcaccgc ctggcagcga tccgcacccg atccagctca cctcgccaga gatcgtgagc
     4681 tcatcaagca acgcggggga gtagccggga agtctggccg gtagcagcag tgactccagg
     4741 gcactggccg gcaatggcgc accagccagc tgctccacga caccgagcac gtcctctggg
     4801 gtggatgcac tgcgcagccg ccgcgctggt ccggcaccgc gcccggacgt atcccaggag
     4861 ccgatcccgt gccaggctgg caggaaccgg cccagggctg cctgttcgac cggttcgacc
     4921 tcggcccgta agcgggctaa cgacgctcgc cgcaaccggc gcagcacctc ggcgtggcag
     4981 tactcagtgc cgccgccacc gagctcaacc gggcgcagct caccgcggac cacagttccg
     5041 gtccgggtca tgcgatccag caccgcaccc accacggcga tcccgagccc gaagcgatct
     5101 gcggcagcgg tcgcgctgaa cggtccgtgc gttctcgcgt atcgcaggag aagatccccg
     5161 agcgggtcgg tcaccggttc ggtgaacacc tccggcactc cgaccggtag cggcgcgccc
     5221 agcgcgtcgc gcacccgccc ggcgtcctcg atcgcgatcc agcgttgctc gccggcgatc
     5281 cggaccggga tggctcgcct ggccgcgccg agctcggtaa gccactccgg ggccacaccg
     5341 cgctgcatgg cctcgagctc ggtgagatca cccagtgcgc gcagcaggtc agcggccccc
     5401 tctacgtccc ggacgcgccg ttctgcatcg aggcgttgca gttgcgcctc gacttcgatg
     5461 agtacctccg ggtcgagcag ctcccggatc gcttcggagc ccaacagctc cgccagcaat
     5521 gtggagtcga gggcgagcgc cgcggtcctg cgctcagcca gcggggcgtc caactcgtag
     5581 aggaacattc ccacgtaacc gaacagcagg ctgcgagcga acggggatgg tgacggggta
     5641 gcaacctcta ccactcggac ccgccgggcg cgcacctccg acatcagctc tcgcagcccg
     5701 ggcaggtcat agacgtcctg gaggcactcc cgcatcgcct ccagcaccac cgggaactgc
     5761 tcgtacctgg cggcgacagc gagcagctgg gctgagcgct gccgctgctg ccacagcggc
     5821 gtgcggcgcc gcggatcgcg gcgcggaagg agcagggacc gcgcggcgca ctcgcggaac
     5881 cgtgaggcga acagcgccga accccccacc tcggcgatga cgagctgttc gatttcctcc
     5941 gggtcgaaca gcacgtcctc ggccgtgggc gccacctcgg caccatcggc gtcgagtgag
     6001 tccggcaggc gcaacacgat cccgtcgtcg gcgctggcca cctgtgcctc aacaccccgc
     6061 cgttcccgta gccgggcgcc gatcgccagc gcccatggtc cgttgacttg cgcgccgaat
     6121 ggggagtgca cgaccatccg ccagtcaccc agttcgtcgc ggaaacgctc cacgaccacg
     6181 gtgcggtcat cgggcacgtg acccgcggct tcgcgctgcg catgcaagta ggacagcagg
     6241 ttgtcggcag cccaggcgtc gagcccgact ccctcgatgc ggctgcgcgc cgcatccact
     6301 ccggcgccgc tgagctcacg gacgaaagcg cccagtgccc gccctagctc caggggccgt
     6361 ccgggggcat cgcccttcca gaacggcatc cgggctggtt cgccgggtac gggcaacgcg
     6421 atgacccggt cgtgggtgat atcgacgatc ttccatgagg tggaaccgag caagaatgtg
     6481 tctcccaccc gggactcgta caccatctcc tcgtcgagct cgccgacccg cgacgccttc
     6541 tccgagccgg ccaggaacac accgaacatg ccgcggtcgg ggatcgtgcc gccgctggtc
     6601 acggcgagcc gctgggcgcc ggggcggccg gtcagctcgt cggtcgtgcg gtcccacacc
     6661 agccgcggcc gcagctcggc gaaggcggtg gacgggtacc gccccgagag catgtcgagc
     6721 accgcgtgca gcgccgactc gggcagctcg gcgaacggcg cggcccggcg caccagcgcg
     6781 gccagctcgt cgacgtgcca catgtcgagc gagaccatcg ccacgatctg ctgggccagc
     6841 acgtcgagcg ggttgcgcgg gtaacgcagc tcctcgatcg cgccctcgcc catccgctcc
     6901 gcgaccaccg cgcaggagac caggtcgccg cggtgtttcg ggaacaccac gccgcgcgac
     6961 accgcgccga cctgatggcc ggcccggccg atgcgctgca gcccggccgc gacgctcggc
     7021 ggcgcctcga tctgcacgac gagatcgacc gagcccatgt cgatacccag ctccaggctg
     7081 gaggtggcca cgaccgccgg cagctggccg gacttgagcg cctcctcgat g
//
LOCUS       DASVXZ010000438         4510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_673610, whole genome shotgun sequence.
ACCESSION   DASVXZ010000438 DASVXZ010000000
VERSION     DASVXZ010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4510
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673610"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(988..2808)
                     /locus_tag="VF788_09055"
     CDS             complement(988..2808)
                     /locus_tag="VF788_09055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX8934324.1"
                     /translation="MAETPAGSADTPPPCLPRPSSSDPAELGFVRRPMVRWLDPHQLV
                     DTAVRVLLSGVFSSYADNRELQALEPVEVPDRSGQADLWLDYVADLGDGWNSTYTVAR
                     LLASEELKLDWDGETHATERGRVLVMGGDQVYPVPKAAEYENRMLGPYRAALPCAAGE
                     APELFAIPGSHDWYDGLVNFTSIFCRNRWIGGWKTRQRRSYFAVKLPNRWWLWGIDIQ
                     FGSYIDEAQLRYFAGAALNHVEPGDRIILCMAKEVESGRKGTEVHSDRDVEFLEREII
                     QPCGAQLLLSIKSGKHYYARYEQENGFRQHIASGGGGAFLHPTHNLPERMNLPDAQGP
                     VAYRKASTYPSSEASKRLLKRIWLLAPYNLPLSGVFGAVEVLLALTLGLHLGDRHVAL
                     GLGNLLNAVWESPTFFLLVLFLIVFVVGMVRFAHDARGVRRFVVGMLYSTLQLAGAAG
                     VMIAASWLSSAFGLRGLGSLVVFLSLLFLVGGIGGMVGMSGYLWVANCFGLHGTEGYA
                     AQHHQDLKHFLRLHIQADGALTVYPIGVDRVGRKWTLCPDAPAHEPWFAPSGSEPEPH
                     LIEKPITISGQPDLKSSDTDPQRVPSSSNASPERDNGAAR"
     gene            complement(2890..3126)
                     /locus_tag="VF788_09060"
     CDS             complement(2890..3126)
                     /locus_tag="VF788_09060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934325.1"
                     /translation="MTASNAEGQRVVLARRSKFSTMVPFHWSDEAPPGLNDVEWAEEL
                     GAKWEGDELVTYDYPSLTGLLEYYEKGEYLPDND"
     gene            complement(3664..3897)
                     /locus_tag="VF788_09065"
     CDS             complement(3664..3897)
                     /locus_tag="VF788_09065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934326.1"
                     /translation="MAAAAAAKAKRSWPDVIGDVLADTVMALLDLPLWLRSQTRTQKL
                     IDAILSLPEERDRTAAVTDRCTSSSAGVARQQS"
     gene            complement(4290..>4510)
                     /locus_tag="VF788_09070"
     CDS             complement(4290..>4510)
                     /locus_tag="VF788_09070"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934327.1"
                     /translation="ARVHLAEQLGCELTEEGCLLVNSEGQTTIEGLYAAGDITPGIQL
                     VSVAVGKGTTAGVACAISLQGQRGIPNS"
BASE COUNT          898 a         1427 c         1372 g          813 t
ORIGIN      
        1 ggtgatcaca gctctgcggc gcaccaccat caaggggaaa aaggcgacca tccgccgcga
       61 gcgggacccg gcgagcaggg ccgacccggg gcgctgatgc gttgttgcgt ggtgggcacg
      121 gttgggcact gcggtgctta gctcaaatgg cgtgggtaag ttcgctgaag gtttgtgaga
      181 tgcgatgccg ccggccgaca tcgaggccga gttcgtagtg gccacaggcc tgaacgatgc
      241 tggcctgcga cttctgttct atgtgctatt gaccgaattc acatcgagtt ggcctgagct
      301 gcattcagat gcgctgaggg gttggatgcg gcccacgaca tcgataccgt tgcggataag
      361 caatgcagta gtaaccccca caccccctac ccgagttcga gtgaacgatc cgtcactgat
      421 catgcgtcga ccacaggacg ggctgaactc ctgaagcagg gcaacagaaa ccgccgcttt
      481 ccgagcgatc tctagggtcc ggtaagcgcc tgcaatgtat tgcgaggtca cgtcctcgcc
      541 atcacatgta atcactcggg ccttgccatc gagcacatcg tatccatctc ctccaacgat
      601 ctcggctcgc gaacgtggag tacctaaccc tcctaactct tccgggcaag caagagtgac
      661 gcctgcaaga tcggctcgtg agggcgcctg tcccgccgac gtgccgttgt acttacattc
      721 cacaccgccc aggcaggcgc tcgccagaat tgacacctgc cctggacgac gatttactga
      781 attactactc atctcgcctc catcacgtgc tcaaaaatcc atcacaagaa ttcaccacag
      841 cgcggcagct tcatccgtgg cgtaccgctc ggtgcgatgt cacgcctggg gcagaatctg
      901 gtcgaccacc cggaggtagc acgcggcctg ctcggtaacg accttgatcg gcgccacgac
      961 ggcggtggca aggacacggt cggagaatca ccgggctgcg ccgttgtccc gctcgggtga
     1021 ggcatttgat gatgacggta cacgctgtgg atcagtgtcg gagcttttaa ggtctggttg
     1081 accactgata gtgattggtt tttcaatgag atgcggctcg ggctcagaac cggagggggc
     1141 gaaccagggc tcatgtgcag gcgcatccgg gcacagtgtc cacttccggc cgacccggtc
     1201 gacgcctatc gggtacaccg ttagggcacc gtcggcctgg atatgcaaac ggagaaaatg
     1261 cttaaggtcc tgatggtgct gggctgcata cccctccgtt ccgtgcaggc caaaacagtt
     1321 agcaacccag aggtagcctg acatccctac cattcctccg atgcccccca ccaggaagag
     1381 caagctgagg aagacaacca aagaccccag gccgcggagc ccgaaagccg acgacagcca
     1441 ggaggcggcg atcatgaccc cggccgcgcc cgccagttgc agcgtcgaat agagcatgcc
     1501 gaccacgaat cggcggacac cgcgggcgtc gtgggcgaag cgcaccatcc cgaccacgaa
     1561 cacgatcagg aacaggacaa gaaggaagaa cgtcgggctc tcccacacgg cgttaagcag
     1621 gttaccgagg ccgagtgcga cgtgacggtc gccgagatgc agtcccagcg tcaatgccaa
     1681 cagcacttcg acggcgccga acacccccga aaggggaagg ttgtacggag cgagcagcca
     1741 gatccgtttc agcaaccgtt tcgacgcctc cgatgacgga taggtgctgg ccttccgata
     1801 ggcgacgggt ccctgtgcgt caggaaggtt catgcgctca gggaggttgt gggtaggatg
     1861 caaaaacgcg ccgccgccgc cggaggcgat gtgctggcga aagccattct cttgctcata
     1921 gcgggcgtag tagtgctttc cactcttaat ggacagtaac aactgggcgc cgcagggctg
     1981 gatgatctcg cgctcaagga actccacatc acggtcagaa tggacctcag tgcctttcct
     2041 gccgctctct acctccttgg ccatacagag gatgatccga tccccgggct ccacgtggtt
     2101 gagggcggca ccagcgaagt accgcaattg ggcttcgtcg atgtaggacc caaactggat
     2161 gtcgatgccc cacagccacc agcggttcgg gagcttgacc gcgaaatagc tccgacgctg
     2221 ccgcgttttc catccaccga tccaccgatt gcggcagaag atgctggtga agttgaccag
     2281 cccgtcatac cagtcgtgac ttcccggaat ggcgaagagt tcgggagctt ctcccgcggc
     2341 gcacggcaac gccgcccggt acggaccgag catgcgattc tcgtactccg cggccttggg
     2401 caccgggtac acctggtcgc cccccatgac cagaacgcgt cctcgctcgg tggcgtgggt
     2461 ctcgccgtcc cagtcgagct tgagctcttc gctggccagc agtctggcga cggtgtacgt
     2521 cgagttccac ccatcgccga ggtcggcgac gtagtccagc cacagatcgg cttgcccgga
     2581 gcggtccggg acctccaccg gctccagcgc ctgcaactcc cgattgtcgg catacgagct
     2641 gaagacaccg gagagcagga cccggaccgc ggtgtcgaca agttggtggg gatcaagcca
     2701 gcgcaccatg ggtctgcgca cgaacccaag ctcagctgga tcggaggacg acggccgagg
     2761 aaggcacggc ggaggcgtgt cggcggaacc cgcaggtgtc tcagccatgc tcaacatcct
     2821 cgcaacgggc aggctagacg cgcaccacca gggcgcccgg gtccacccgc atccccaacg
     2881 gaccccgtat cagtcgttgt ctggcaggta ctcgcccttc tcgtagtact caagaaggcc
     2941 ggtcagcgac gggtagtcgt aagtgaccag ctcgtcgccc tcccacttcg cgcccagctc
     3001 ctccgcccat tccacgtcgt tgagaccggg cggcgcctca tcggaccagt ggaacggcac
     3061 catcgtgctg aacttgctac gccgggccag gaccacccgc tggccttctg cattcgacgc
     3121 tgtcacgggc gcaaattata ctcctgggac tcggccagga cctgttcact gacctctcgc
     3181 cagcggtagt gcaaccgctg gcagccaggc tctaccaaag cgacgcgcca ctgatcgtgc
     3241 tcgccatggc gccaagcgca gcagcaccga cgacgcgtcg cctatcacaa gtgtgccgcc
     3301 gtccagtcca cctcttcacc gttatccgga atcagccgta ggcgacagca ttggactgca
     3361 tagggatctt catcgggttc tccaccctcg tccgcagggt tggcgatcaa gcccggagtt
     3421 cgcggacggc tgtaaaaact tggatttcgc tggactgagc ggggctccga agatgtcgca
     3481 atgagcagcc gactcctccg ctgagcagca aaatcgtcct tgcaaggcgg ggagaggtag
     3541 ccgccgaggc ccgcataggg atgtctcgta cctccttcgg cacgtcgcgc ggctcacatc
     3601 ctcttgaccg tcgtcgctcg cctaaagatc gatctcttcg agatgaacgc tcatcagcgg
     3661 cggctacgat tgctgcctgg ccactcctgc tgacgaggac gtgcaacggt cagtcaccgc
     3721 agccgtcctg tctcgctcct caggcaggct cagaatggca tcgatcaact tctgcgtgcg
     3781 agtctgggat cgcaaccaca acggcagatc tagcaaagcc atgaccgtat cggcgagcac
     3841 gtcgccgatc acatctggcc acgaccgctt ggccttcgcg gcggcggccg cggccatctg
     3901 tttttgggat gacagatgat gtccagcgcg accgccggat gtgtgtcagc atcggaaacc
     3961 acctcagcaa tcagctcata cttgaccttc aaacggccca cggccagacc aggtaggtcg
     4021 tggcgccgac accgagatca caaatcggat ggtcatcttc cggcggtatt cgtcgcggcg
     4081 tcgagtcgat gacggccagg ccgcaagcgg aatcggccga gcaggcaagc gtaggacgac
     4141 gaactcagcc aagtctgcgc tgccgcaggc ggtgcctagt ggtgggctgg acacagaatc
     4201 gaagggtcgc agttgtgccg gtcaagatcg agcgtctctg gaacagggtc gcgacctcac
     4261 gcgcagcgcg gttcgggtca ggggccggtc tatgagttgg gtattccccg ctgtccttga
     4321 agtgatattg cgcaggccac tccggcggtc gtgcctttgc cgacggcgac cgagacgagt
     4381 tggatgccgg gggtgatgtc tcctgcggca taaaggccct cgatggtggt ctgcccctcg
     4441 ctgttgacca gcagacagcc ctcttcggtg agctcgcatc cgagttgctc ggccagatgc
     4501 actcgggcat
//
LOCUS       DASVXZ010000439         3701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1278215, whole genome shotgun sequence.
ACCESSION   DASVXZ010000439 DASVXZ010000000
VERSION     DASVXZ010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1278215"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1811
                     /locus_tag="VF788_09075"
     CDS             <1..1811
                     /locus_tag="VF788_09075"
                     /inference="COORDINATES: protein motif:HMM:NF016099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019290 - siderophore biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="IucA/IucC family protein"
                     /protein_id="HEX8934328.1"
                     /translation="AVRQARAVALGKLWVALSRERVEGLIPLASNGRARILLPDGTQL
                     SAPSAITAAFAEHSAGLAVTRHGTHPQQIDHPVALLRAVLATQPTWVDTDRWLHLSAE
                     LDQSVVNHALALVGESWRRERLTRDGIPESNVLRWAARRTVTNPVFSPLAVFEQAVID
                     GHPLHPCARVRGGMTTQELFSYTPEWVDEVALRIVAIAGSSFAHSSSTRPTLTSELRQ
                     WHPEAADAAHAHLLGARRDPADYELLPVHPWQLRRILPERYADALARGRLIAIPRAQI
                     RARPLLSLRTLAPAANRRAAHIKTSVDIRLTTATRVISPATVHNGPIMSALLAEICRR
                     ERGFGGRLVILSELASGGYRPAPDESVDTAASLAATIRESPERHTGDGEVALPVAALA
                     ARSPLNGRPLLADVLDELASAHGCLRSASAGQFLTRYCDCLFPALFALLSRWGIALEP
                     HGQNSVVVLRDGLPSRVLYRDFGSIRVSPTRLARSGVQPPALIGTLPTDDEDELRAAL
                     FFPLLDTNLGQIVAALARVGEIDATRLWQLVAQRCRSAYTALTADPAIAAAASRDEAA
                     MFGSTLPAKSLLRVQLSANPHAPQWVAVPNPLAVAG"
     gene            1871..>3701
                     /locus_tag="VF788_09080"
     CDS             1871..>3701
                     /locus_tag="VF788_09080"
                     /inference="COORDINATES: protein motif:HMM:NF016099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019290 - siderophore biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IucA/IucC family protein"
                     /protein_id="HEX8934329.1"
                     /translation="MYETLQANVPRYASAFLKQLPRARTVVLHRLLAALWREDIGEIR
                     TASCRLDLSPPVPGRADLSAFESQLRTIRTGSWFVLQLEATVVLAFPVRAEHAFDNVK
                     PGYPVLCLRAGEANGIRSPDDLVELLAEFAPALGWRSFAAELADTVANLALAYTRTEE
                     QGLVLRQLAIQLNASDTVSLAQRLASSEAPEDIMVFFERLNTEGHNLHPCGRGRLGMQ
                     PAAVLRHDLESETSTNLILVAIRRERIESTPDEQGRDVGELLWAEYPKLNAAVREHFR
                     VDRLDPAAYVFVPVHPWQLEQVVHPLLAEEIADRTVVPVPAARLACVPTSSVRTLLTE
                     SSSGGRRLLVKTALDTLIGSTRRSISAHTTNNGPVYSRLLRQIIEREPALIDRIVLLD
                     ELAGASYRPLPHDPDPDRRSRALSALIRRDVNAYLRPEELPVPGCALPARAPVTDSSL
                     LIELVTRYARMRGEADLGVAGLRFAEEYAALLLPVSVILMTKYGIAVEAHLQNCIFTF
                     VEGMPTRLVLRDWGGMRIYLPRLRRQGLALDPRPGTVTVTDDVQVMRAKVLYTALSNH
                     LGEVLAHLVTRCGVDSGQAWRLVRTVVRGILTGLAADPALREDV"
BASE COUNT          567 a         1311 c         1200 g          623 t
ORIGIN      
        1 tggccgtgcg gcaagcccgg gcggtggcgc tgggcaagtt gtgggttgcg ctgtcccggg
       61 agcgggtcga gggcctgatc ccgctggcaa gcaacggccg cgcgaggatc ctgctgcccg
      121 atggcaccca gctctccgcg ccatccgcga tcacagctgc cttcgccgag cattcggcag
      181 ggctggccgt cacgcggcac ggaactcacc cacagcaaat cgatcatcca gtcgccttgc
      241 tcagagcggt actagcgacc caaccaacct gggtggatac cgaccgatgg ctccacctat
      301 ccgctgagct tgaccagagt gtcgtcaacc atgcgctggc gctcgtcggc gagtcgtggc
      361 gacgcgaacg gctcaccaga gacgggatcc cggagagcaa cgtgctccgc tgggcggccc
      421 ggcggaccgt caccaacccg gtgttcagcc cgctcgccgt gttcgagcaa gcggtcatcg
      481 acgggcatcc gctacacccg tgcgcccgcg tccgcggcgg gatgaccacg caggaactgt
      541 tcagctacac cccggaatgg gtagacgagg tcgcgttgcg gatcgtggcc attgccgggt
      601 cttcgttcgc ccattcttct tcgacgcggc caacgctgac ctcggaactg cgtcaatggc
      661 acccagaggc cgctgacgct gcacacgcgc acctgctcgg cgctcggcga gatccggccg
      721 actacgagtt gctgccggtc cacccctggc agctgcggcg gatcctgccg gaacgctacg
      781 ccgacgcgct cgcccggggc cggctcatcg ccatcccacg agcgcaaatc cgcgcccggc
      841 cgctgctatc gctgcggacg cttgctcccg cggcgaaccg gcgagctgcg cacatcaaga
      901 catcggtcga catcaggctc actaccgcga cccgcgttat ctccccggca acggtacaca
      961 acggcccgat catgtcggcc ttactggctg agatctgccg gcgcgagcga ggcttcggcg
     1021 gccggctggt gatcctatcc gagctggcca gtggaggtta ccggcctgcg ccggacgaaa
     1081 gtgtcgatac ggcggccagt ctcgccgcga ccatccggga gtccccggaa cgccatactg
     1141 gtgatggtga ggtcgcactt ccggtcgccg cgctcgctgc ccgctcacca ctgaacggtc
     1201 ggccgctgct tgccgacgta ctcgacgaac tggcgtccgc ccacggctgc ctgcgctccg
     1261 cgtccgcggg gcagttcctc acccgctatt gcgattgcct gtttccggcg ctgttcgccc
     1321 tgctgtcccg gtgggggatt gcgctggagc cacacgggca gaactcagtt gtggtgttac
     1381 gcgacggcct gccgtctcgc gtgctctacc gcgatttcgg cagcatccga gtcagcccaa
     1441 cccggttggc gcgcagcggg gtgcagccgc cggcgctgat cggcacactg cccacggacg
     1501 acgaggatga gctgcgcgcc gccctgttct tccccctgct cgacaccaac ctcggccaga
     1561 tcgttgccgc gctggccagg gtgggggaga tcgacgcgac ccggttgtgg cagttggtgg
     1621 cccagcgctg ccgctcggcc tacaccgctc tcactgcgga cccggctatc gcggctgcgg
     1681 ccagccggga cgaggccgcc atgttcggct cgacgttacc ggccaagtcc ctgctgcggg
     1741 tccaactttc cgccaacccc catgccccac agtgggtggc agtgcctaac ccattggcgg
     1801 tcgccggatg aaccacgccc acgacgacac cccagctggg gtccagctcc gcacgccaga
     1861 ggagctgaga atgtacgaga ccctgcaggc gaacgtgccg cggtacgcgt cagcgttcct
     1921 caagcagctg ccgagggcgc ggaccgtagt gttgcaccgc ttgctcgcag ctttgtggcg
     1981 agaagacatc ggcgagatcc ggacggcgag ctgccgcctc gacctcagcc cgcccgtccc
     2041 cggccgcgcc gacctttcgg cgttcgagtc ccagctgcgc actattcgaa cgggcagctg
     2101 gttcgtcctc cagctcgagg ccacggtggt gctggccttc ccggtccgcg ccgagcacgc
     2161 cttcgacaat gtcaaaccgg gatacccggt gctgtgccta cgcgccggtg aggcgaacgg
     2221 gatccggtcc ccggatgacc tcgtcgagct cctggccgag ttcgctccgg cgctgggctg
     2281 gcgatcgttc gccgctgagc tcgccgacac cgtggccaac ctcgcgttgg cgtacacccg
     2341 aaccgaggag caggggctgg tactgcgcca gcttgcgatc caactgaacg cgtcggacac
     2401 cgtgagcctt gcccagcgcc tcgcttcaag cgaggccccc gaggacatca tggtgttctt
     2461 cgagaggctc aacaccgagg ggcacaacct gcatccgtgc gggcgcggtc ggctgggaat
     2521 gcaaccggct gccgtgctgc gtcacgacct ggagtctgag acgtcgacca atctgatcct
     2581 cgtggccatc cgccgagaac gcatcgagtc cacacccgat gagcaaggcc gtgatgtcgg
     2641 tgagctgctg tgggccgagt acccgaaact caacgcggcc gtccgtgagc atttccgcgt
     2701 cgatcgactt gatccggctg cctacgtgtt cgtgcctgtg cacccctggc agctcgaaca
     2761 ggtcgtccat cccctgctcg ctgaggagat cgcggaccgc acagtggtgc cggtacccgc
     2821 cgcgcggttg gcctgcgtgc cgacgtcgag cgtgcggacc ttgctcaccg aaagctcatc
     2881 cgggggccgc cgcctgctgg tcaagaccgc cctggacacc ttgatcggct ccacccgacg
     2941 gtccatctcg gcgcacacga ccaacaacgg cccggtgtac agccggctgc ttcggcagat
     3001 catcgagcgg gagcccgctc tgatcgatcg gatcgtcctg ctcgacgagc tcgccggagc
     3061 cagctaccgg ccgctgccac acgacccgga ccccgaccgg cgctcccgtg cgttgtccgc
     3121 actcatccgt cgtgacgtca acgcttacct ccgtcccgaa gagctgcccg tgccgggttg
     3181 tgcgctgcca gctcgggcgc cggtgacgga ctcaagcctg ctgatcgagc tggtgacccg
     3241 ctacgcccgg atgcgcggcg aagcagacct cggcgtcgcc gggctgcgct tcgccgagga
     3301 gtacgccgcc cttctgctac ccgtgtcggt gatcctgatg accaagtacg gcatcgcggt
     3361 ggaggcccac ctgcagaatt gcatcttcac cttcgtcgaa ggcatgccca cccggttggt
     3421 gttgcgtgat tggggcggga tgcgcatata cctaccacgg ctgcgccggc aggggttggc
     3481 gcttgatccc cgcccgggaa cggtcacggt gaccgatgac gtccaggtga tgcgggccaa
     3541 ggtgctctat accgcgctgt cgaaccacct cggcgaggtc cttgcccacc tggtcacccg
     3601 gtgtggcgtc gattcgggac aggcatggcg gctcgtcagg acagtggtga ggggcatcct
     3661 caccggcttg gcggctgacc cggcattgcg ggaggacgtt g
//
LOCUS       DASVXZ010000440         1500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1457581, whole genome shotgun sequence.
ACCESSION   DASVXZ010000440 DASVXZ010000000
VERSION     DASVXZ010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1457581"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..871
                     /locus_tag="VF788_09085"
     CDS             <1..871
                     /locus_tag="VF788_09085"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8934330.1"
                     /translation="EVVYKDGGPVGVMVAEQRVGPAGEPTLRDLSAALIAVCGTDYGV
                     HSPTWISRFTDMARQAAAYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQ
                     VVKRISPESLLDTYHAERYPVAARVLRNTMAQVALLRTDDRTDALRDVVSELLKMDEP
                     RKRFAARMSGLDIHYDLGEGHPLLGRRMPDLDLVTADGPLRVFTLLHGARPVLLNVGE
                     PGGFDITPWADRVQLIDAEYAGIWELPALWAVTAPTAVLIRPDGYVGWVGDRTQLGLA
                     DALTTWFGPPDAA"
BASE COUNT          281 a          475 c          460 g          284 t
ORIGIN      
        1 cgaggtggtc tacaaggatg ggggtccggt aggggtcatg gtggccgaac agcgcgtcgg
       61 gcccgccggc gaacccaccc tgcgtgatct cagcgcggcg ctcatcgccg tatgcgggac
      121 cgattacggg gtccacagtc ccacgtggat ctccagattc accgatatgg ctcggcaggc
      181 cgcggcctac cgcgacggac gggtgctgct ggccggcgac gccgcgcacg tgcattcccc
      241 ggtgggggga cagggcctca acaccggtgt gcaggatgcg gtgaatctgg gctggaagct
      301 ggcccaggtg gtcaagcgga tatcgccgga aagcctcctg gacacctatc acgccgagcg
      361 ctacccggtc gctgcccgcg tgctgcgcaa cacgatggcg caagtcgcgc tgctccgcac
      421 ggatgaccgc accgacgcct tgcgcgacgt cgtatccgaa ctcctcaaga tggacgagcc
      481 gcgcaagcga ttcgcggcga ggatgtccgg gctggacatt cattacgacc tcggcgaggg
      541 acacccgctg ctcggacgcc gcatgcccga tctggacctg gtcaccgccg acggcccgct
      601 gcgggtcttc accctgctgc acggcgcccg gcccgtgcta ctcaacgtcg gtgagcccgg
      661 cggcttcgac atcactccat gggcagatcg ggttcagtta atcgacgccg aatacgctgg
      721 tatatgggag cttccggcac tctgggcggt cactgctccc accgccgtgt tgattcggcc
      781 cgacggatat gtgggctggg tgggagaccg aacccagctg gggctcgccg acgcgctaac
      841 cacctggttc ggaccgcctg atgcggcgta gcgcgaaggg gcactcgcgg ctgacccgaa
      901 tgctgccgcg gcacgacgac gtcgtacaca ccggcgagca acagcaccgg cttccaagat
      961 caatctgtta ggagttctta tggaccttac caacgcttct accgggaggt ctcatcatgc
     1021 ctgcatcgtg ggctactcgt gccgatgagc gcacaaaaag agctgagtag gtgctgcacc
     1081 tctgtactcg caactgacag tcagtttccg agaagcccgt tgatcggaag ctcagtttcc
     1141 gagaagcccc cttctcaaag gttcgtggat agagataacc taccccttat tgaaggatat
     1201 ctggcctggg ccaaaaacct tcctttttga cacatatggt cggagaatcc ccattctccg
     1261 acctgtttta ccgtttactg cttcgagagg aatctgagat tacgattctg tctgcaaagc
     1321 gcgaacctct gcttgctggc tcccattgtc cggaacggca acatagagcg tgcccgagtg
     1381 gggcgcgaac agcgatgtcc gagctccctt tgccgaatca gcccggcctt ctagcttata
     1441 ggtgtcaggg tccgtctgct caaagacgct aacagcaccc tctccgccgg agacgtagat
//
LOCUS       DASVXZ010000441         5131 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1367473, whole genome shotgun sequence.
ACCESSION   DASVXZ010000441 DASVXZ010000000
VERSION     DASVXZ010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5131
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1367473"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..809
                     /locus_tag="VF788_09090"
     CDS             <1..809
                     /locus_tag="VF788_09090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxidase"
                     /protein_id="HEX8934331.1"
                     /translation="TIENVPPTGLPDHLPPAPLGEFLLGYPSQQAGEYIYPVPTPQQL
                     GANGSFAAFRVLAQDVDAFTDFLAKQAARTGMSEELIAAKLCGRWRNGTPLVLSPDTD
                     TPDPPIPPEALNDFDYYDDVRGYRCPIGSHIRRMYPRGQRVAGAGAHRHRIVRRGVPY
                     GPPYDPTRPHDGQERGLLGLFIGVSLRDQFEFLMAQWANDSQFAGSLGLKDKDPLLGS
                     YPDGSGTFSIPHPEGPIVLDGLSRFVITRGGAYCFLPSITGIRYLGQVTG"
     gene            complement(837..1133)
                     /locus_tag="VF788_09095"
     CDS             complement(837..1133)
                     /locus_tag="VF788_09095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934332.1"
                     /translation="MADSTSHRMAGNNSLQLAYRWWITLDQADRQRVWDARYSYLAGD
                     LVESMAKAGVPVISDGRWSCVGVGPTGFTVPIAVERLLRRLSQVPDGDSPLGDV"
     gene            1538..1999
                     /locus_tag="VF788_09100"
     CDS             1538..1999
                     /locus_tag="VF788_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8934333.1"
                     /translation="MTLPIDERIGHQIKRAEQELIAVKNAVLRPAGLNVPQYTVLLVL
                     AEEPGLSGAALARRCLVTPQTMSTVLNTLETKGLVSRQNHPVHTHIQEARLTRKGRAA
                     LTKADAAAVEVERELAKQFTDEERALLRELLSRCTDQLAVSLQRVKASRVS"
     gene            2225..2608
                     /locus_tag="VF788_09105"
     CDS             2225..2608
                     /locus_tag="VF788_09105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934334.1"
                     /translation="MDLVYGEAGSGHASCDYTYVEPEVEQEHDKQPSRHPVADLPAAG
                     ALLTRPGLRIVDMTHAFGPDFPVLNPPVLPPEIDHFATVPTHGFNANKLTIDEHTGTH
                     MDVHHTSTTPLVSPTRSHPTSSSHR"
     gene            2596..3069
                     /locus_tag="VF788_09110"
     CDS             2596..3069
                     /locus_tag="VF788_09110"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004061 - arylformamidase activity
                     [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEX8934335.1"
                     /translation="MAPLIVIRIQSRAAQDNDTTLTVDDIRAWEHNHGRIPRGSFVVM
                     DSGWAARIDQPGAFINRDTAGQAHFPGLGAEAVHFLTTRRSIVGAGVDTPSLDAAVHL
                     TDPQAHRLLLGPNNRYGVENINNLSDVPDIGAVVIVGAIRHRRSYGGPVRMLAFH"
     gene            complement(3129..3425)
                     /locus_tag="VF788_09115"
     CDS             complement(3129..3425)
                     /locus_tag="VF788_09115"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX8934336.1"
                     /translation="MYHIVVSFEVPASRREEFIAAALEDGRNSETEEPGTYRFELIED
                     ENDPNRFYLDEAYEDIPSFETHVDGRHFKRFFELIESYAQGPTWLVKGHTVVQS"
     gene            complement(3443..5107)
                     /locus_tag="VF788_09120"
     CDS             complement(3443..5107)
                     /locus_tag="VF788_09120"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8934337.1"
                     /translation="MMTNQYKMSYALGITGLWPGIGSGHGSWRAGAGWRRWDTSGIGD
                     WRRSDRNDHACELLRRGVQVRVVDAAPDPVPYCKALLLWPRTIDVLAELGLADEVPRR
                     GIRINAFRYYSSGRELIKVHFKPELASWALPQRSTEDMLRAKLVELGGRIERGVRLLA
                     LDRMDFSGDPAHSSGITAILEHPDGHIERYVTPWLVGADGAGSAVRAQLGLGFSGSTY
                     ASHFLLADAHIEGSLADDEAHYYQSPDGVLVIVALPNGIFRFFASAPRCSVSADGRPQ
                     VDLALMQRLVDERGPRGVRLVNPEWLSVFRVHRRQAEQFQLGRAFLVGDAAHVHSPAG
                     GQGLNTGMQDAHNLAWKLAAVIHGEARHRLLGSYTPERHRVAAQVVRDTDVQTRAWLM
                     RHPLAVAIRDTAFRLAHHSGLIERNYLPTMAGRRIRYLAEQSTALLGVTQRCERGPLG
                     VGTVVPLALARPLRPSASRGGRPRWWLLMRDAGLRIDHLPQVDITIDPTELAAVTGCR
                     RTAFLLVRPDGVVAARGHREDLPKLRRWISDLLAPARESIPTVGVT"
BASE COUNT         1018 a         1689 c         1493 g          931 t
ORIGIN      
        1 cgactatcga aaacgtccct ccgaccgggc tgccggacca cctgccacca gccccgctcg
       61 gcgagtttct gctcggctat cccagccaac aggctgggga atacatttat ccggtgccga
      121 cgccgcagca gttgggcgcc aacggcagtt tcgcagcttt ccgtgtgctc gctcaggacg
      181 tcgacgcgtt tacggatttc ctcgccaaac aggcggcccg gaccgggatg tccgaggaac
      241 tcatcgcggc caagctgtgt ggacgctggc gtaacggcac gccgttggtc ctctcgcccg
      301 acaccgacac gcccgacccg ccgatccctc ctgaggcgct gaacgacttc gactattacg
      361 acgatgtgag aggttaccgc tgcccaatcg ggtcgcacat acgccggatg tacccgcggg
      421 ggcagcgtgt cgccggcgcc ggtgctcacc gacatcgtat cgtccggcgg ggagttccct
      481 atggccctcc ctacgatccc acgcgtcctc acgatggcca agaacgcggg ctgctcggcc
      541 ttttcatcgg ggtcagcctc cgagatcagt tcgagtttct gatggctcag tgggctaacg
      601 atagtcagtt cgccggcagc ctcggcctca aagacaaaga ccctttgctc ggctcctatc
      661 ccgacggttc aggaaccttc tcgattccac acccagaagg accaatagtc ctcgacggcc
      721 tgtcccgttt cgtcatcacc cgaggcggcg cctactgttt cttgcccagc ataaccggca
      781 tccgctatct cggccaagtt actggctgaa ccgaagaacc atctgcgcgg atggccctac
      841 acgtctccga gcggactgtc tccgtcggga acttgggaca gcctccggag gagccgctcg
      901 acggcgatgg gcacggtgaa gccggtaggc ccaacaccga cacacgacca gcgcccgtcg
      961 ctgatcacgg gtacgccagc ttttgccatg ctttccacca ggtctccggc gaggtagcta
     1021 tagcgggcgt cccaaactcg ttggcggtca gcctgatcga gggtgatcca ccaccgatag
     1081 gcaagttgta gggagttatt tcctgccatc cgatggctgg tcgagtcagc catgacgact
     1141 cctagtcgat cgctcacgca cacccagctg tcccgcatag gaacttccca gaaggagagc
     1201 agaggcgctc acattaacag ctatcttata tcagtcgggg acgaccccag acacgcagtc
     1261 ttacacttcg attcaggatc gtcaattgat ttcgactgcg atccgcacac catactcaac
     1321 tggattgcgc ctggcagaac tgtggactca cacacgggca gtcaagccat ttttattgcc
     1381 gttcagtcga gcggcacgat cgtacctccg gtgctggtgg aaatgggtac ggcaccgcac
     1441 aggcgggcga gggcggcgtc ggccagcgct tcgataccca gacggacggc tgctgaagtg
     1501 tcaagcatct gatggtctga cgacgtatga tagccatgtg acgttgccca tagacgaacg
     1561 gatcggacat cagatcaagc gagccgagca ggagctcatc gcggtcaaga atgcggtgct
     1621 gcgtcctgca gggcttaacg tgccgcagta cacggtgctg ctcgtgctcg ctgaggaacc
     1681 ggggctctcc ggcgccgcat tggccagacg ctgccttgtc acgccgcaga ccatgtccac
     1741 cgtactgaac actcttgaga ccaaaggcct ggtcagcaga cagaaccacc cggtgcacac
     1801 ccacatccag gaggcgcggc tgactcgcaa gggccgcgcg gcgctgacga aggcggatgc
     1861 ggctgccgtc gaagtggaac gcgagcttgc caagcaattc accgacgagg aacgcgcgtt
     1921 gctgcgcgag ttgctgagcc gctgcaccga tcagttggcc gtgagcctgc agcgggtgaa
     1981 ggcctcgagg gtcagctgag ccgtgctcat gccgcagacc cagtcctccg gtggtggagc
     2041 ctgtctgctc gcacgtgacc agaccgatcc ttgaccgtat gtaagaagcc taagtggtat
     2101 caggtgtcta aaatctatta gctccctttg ctccatcaca tggctgtaca ctgacatagt
     2161 tggtgtgcac tacaccacgc cgatctcgtc gaagggaagc agagtcatgt gtgtagctgc
     2221 ggtgatggat ctcgtctatg gcgaagccgg aagtggccat gcgtcatgcg attacaccta
     2281 tgtcgagccg gaggtggagc aggaacacga taagcagcca agccgtcacc cggtggcgga
     2341 cctgcccgct gccggggcgt tactcacccg tcccgggctg agaatcgtcg acatgaccca
     2401 tgccttcggc ccggatttcc ccgtgctcaa tccacccgtg ctgccgccag agatcgacca
     2461 cttcgcgaca gtgccgaccc acggcttcaa cgcgaacaag ttgacgatcg atgagcacac
     2521 cggaacccac atggatgtcc atcacacctc gacgactcct ttagtttcgc cgacgagatc
     2581 ccacccgaca agttcatcgc accgctgatc gtgatcagaa tccagtcccg ggctgcacag
     2641 gataacgaca ccaccctcac ggttgatgac atccgggcct gggagcacaa ccacggtcgc
     2701 attccaaggg gttcgtttgt ggtgatggac tccggttggg cggcccggat cgaccaaccg
     2761 ggcgcgttca tcaatcgtga tacggccggc caggcccact tcccgggcct cggcgcagag
     2821 gcggtgcact ttctcaccac tcggcgttcg atcgtaggcg ccggagtgga cacccccagc
     2881 ttggacgcgg ccgtgcacct cacagaccca caggcgcacc ggctactgct cggccccaat
     2941 aaccgttatg gcgtggagaa tatcaataat ctatccgacg ttccagacat cggcgctgtg
     3001 gtgatcgtgg gcgctatacg ccatcgccgt tcttacggag gaccagtgcg aatgctcgcc
     3061 ttccactaaa atgagtccgt tcggtgtcgt acggcaccga acggactcat tgtgtgagat
     3121 ctgcggtcct agctctgcac cacggtgtgc cccttgacca accacgtcgg accctgcgcg
     3181 taactctcga taagttcgaa aaaccgcttg aagtgccggc cgtcaacgtg tgtctcgaat
     3241 gagggaatat cctcgtaggc ctcatcgagg tagaaccggt tgggatcgtt ctcgtcctcg
     3301 atcagctcaa agcggtaagt gcccggctcc tcagtctcag aattacgccc gtcttccagc
     3361 gcggcggcga taaactcctc gcgccgcgag gccggcactt cgaagctgac aactatatgg
     3421 tacataggtt cgctccctac gatcacgtga caccaacagt gggtatagat tcccgcgccg
     3481 gcgcgagcag atcggagatc cagcgccgca gcttgggcag gtcctcccgg tgaccgcggg
     3541 cagcgacgac accgtctggc cgcaccaaaa ggaacgcagt acgccggcaa ccggtcacgg
     3601 cggccaactc cgtcggatcg atcgtaatgt caacctgcgg cagatgatcg atccgcagcc
     3661 cagcatcgcg catcagcagc caccaccgcg gtcgcccacc acggctggcg ctcggccgca
     3721 gcggacgagc caacgccagt ggcaccacgg tccccacccc cagcggtccc cgctcgcaac
     3781 gctgggtaac gccgagcagc gcggtggatt gctcagccag gtagcgaata cgccgcccgg
     3841 ccatcgttgg caagtagttg cgctcgatga gtccactgtg atgagccagc cgaaacgctg
     3901 tgtcccgtat cgccacggcg agcgggtgcc gcatcagcca cgcccgggtt tgcacgtcgg
     3961 tgtcgcgcac tacctgtgcg gccacccggt gccgttccgg cgtgtagctg cccagcagcc
     4021 ggtgccgggc ctcgccatgg atcactgcgg ccaacttcca tgccaggttg tgcgcatcct
     4081 gcatgccggt attgagtcct tgaccaccag ccgggctgtg cacatgcgca gcgtcgccga
     4141 ccaggaaggc ccggcccagc tggaattgct cggcctggcg gcgatgcact cggaaaacac
     4201 tgagccactc agggtttacc agccgtacgc cgcgaggtcc gcgctcatcc accagtcgtt
     4261 gcatcagcgc tagatcgacc tgtgggcgac cgtccgcgga caccgagcac cgcggtgcgc
     4321 tagcgaaaaa tctgaagata ccgttcggta gggcaacaat gactagcacg ccatccgggg
     4381 attggtagta atgcgcctca tcatcggcca agctgccctc gatatgggca tctgcgagca
     4441 gaaaatggct ggcgtacgtg gaaccactga acccgaggcc caactgagcg cgcaccgcac
     4501 tgccggctcc atcggcgccg accaaccacg gcgtgacata tcgctcgatg tggccgtccg
     4561 gatgctccag gatggcggta attccactgc tgtgcgccgg gtcaccggaa aagtccattc
     4621 ggtccaacgc gagcagccga acacctcgct cgatgcggcc acctagctcc accagcttgg
     4681 cccggagcat gtcctccgtg ctgcgctgcg gtaatgccca ggacgccagc tcaggcttga
     4741 agtgcacctt gatcaactcc cgccccgagg aatagtagcg gaacgcgttg atccggatgc
     4801 cgcgtcgcgg tacctcgtcg gccaggccca gctcggccag aacgtcgatg gtgcgcggcc
     4861 agagcagcag cgccttgcag tacggcacgg gatccggcgc ggcgtccacc acccggacct
     4921 gcacaccacg gcggagcagc tcacatgcgt gatcattccg gtcggaccgg cgccaatcac
     4981 caatacctga ggtgtcccag cgtcgccagc cagcgcctgc ccgccaagat ccatgaccac
     5041 tccctattcc gggccacaag ccggttatac ccagagcgta cgacatctta tactgattcg
     5101 tcatcatagt ttaaattgat gacttatacc t
//
LOCUS       DASVXZ010000442         1658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1457675, whole genome shotgun sequence.
ACCESSION   DASVXZ010000442 DASVXZ010000000
VERSION     DASVXZ010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1457675"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..1330)
                     /locus_tag="VF788_09125"
     CDS             complement(44..1330)
                     /locus_tag="VF788_09125"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX8934338.1"
                     /translation="MRRPGWIPHIPISPSVKRDVALISAFFLFNLFFFGSWFKISEVP
                     AKPWTVLVWLYALGMLLPLAWRVRAPLVVFGIEWALTVLAWPIEPLYSLYIPVVGVPV
                     ALHAVAAHCSKKTSLLVLLASAVPVGLDASLSFRIYDNFSFQIQSFVANTIILVVATV
                     GAWALGRATLANRQHVEELERERETVREAVAAERSRIARELHDIVSHAVTAIVLQAAG
                     AARIAHTNFAQVTQSLAHIEATGKQAMAELRRLLGVLEASNPDATGFDELGPQPGLTD
                     LALLLSSLQDTGMPVTVHVEGTPRSLDPSIDLAAYRIAQEGLTNVLKHAGMNSHPQLR
                     MVWETNSLRIQIDNDINVAAANRGQALSVGRGLVGLRARAHAAGGRLHAGPHHNGGYR
                     LTATLPLPDTAHRGTRKATVARASGDGRGNQGMVSA"
BASE COUNT          335 a          487 c          523 g          313 t
ORIGIN      
        1 cccgcccgga ccagcggctg atcatcaact acgacaactt ggatcacgct gacaccatcc
       61 cttgatttcc gcggccgtcg ccggaggcgc gcgcaacggt ggccttgcgg gtgccgcgat
      121 gcgcggtgtc cggaaggggg agtgtcgcag tcagccggta accaccgttg tgatgcgggc
      181 cggcgtgcag ccggccgccc gccgcgtgcg cccgtgcgcg caggcccacc aggccacgac
      241 ccacggacag cgcctgcccg cgattcgcgg ccgcgacatt gatgtcgtta tcgatctgga
      301 tgcgcaagct attggtctcc cacaccattc gaagctgtgg atgggagttc atgccggcgt
      361 gtttcagaac gttggtcagg ccttcctgcg caatccggta cgcggccaga tcgatactcg
      421 ggtcgaggct acgtggtgtg ccttcgacat ggacggtgac cggcataccg gtatcctgca
      481 gcgaactgag cagcaaggcc aaatccgtca atccaggttg cggtcccagt tcgtcaaagc
      541 cagtggcgtc gggattgctg gcctccagca ctcccaggag ccggcgcaat tcagccatgg
      601 cttgcttgcc cgtggcctcg atgtgtgcca atgattgggt cacctgcgcg aagttggtat
      661 gggcgatccg ggcggctccg gcagcctgca gcacaatcgc ggtcaccgcg tgggagacga
      721 tgtcgtgtaa ttctcgggcg atcctgctcc gctccgcggc caccgcttcc cggaccgttt
      781 cacgctcgcg ctcgagctcc tcgacgtgct gccggttggc cagtgtcgcc cggcccaatg
      841 cccacgcgcc aacggttgcg acgacaagaa taatcgtgtt ggctacgaat gattggattt
      901 gaaaggaaaa gttgtcgtag atgcggaacg acaacgaggc gtctaggccg acgggaacgg
      961 cagacgcaag caggacaagt agagacgttt tcttgctgca atgcgcagca acggcgtgta
     1021 acgcaacggg aacacccacg accgggatgt aaagcgaata aaggggctcg atcggccacg
     1081 caagcacggt gagcgcccat tcaataccga agaccaccag gggtgccctg actcgccagg
     1141 ctagcggtag gagcatgcca agtgcataca gccatacgag gaccgtccag ggtttggccg
     1201 gcacctcgct gatcttgaac catgagccga agaagaagag gttgaagaga aaaaatgccg
     1261 aaatcagagc tacatcccgt ttgactgacg gtgagatcgg gatgtgcggt atccaacccg
     1321 ggcgtctcat cgggttcctt tacggtggga ggtactgagc gttgaagtga ctctccccag
     1381 agctcgctct accaccacaa ttagggttgt tgttgtagct gttgttgcag ttccggcgct
     1441 gtgctgtact cactctgctg cgcgggcacg aacccaggac agggaccggg aacttttcct
     1501 ctgcatggtc cggtgggatc caaggtgaag acactggccg tcaagctatt gctcggatac
     1561 gcctgtgccg ctgtggcaac aggcgctccc gcgaagatga aaaaagcggc tagtgcgaat
     1621 gtcggtatcc ctatcacggc acgtctgagt aaagatgg
//
LOCUS       DASVXZ010000443         2359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_405832, whole genome shotgun sequence.
ACCESSION   DASVXZ010000443 DASVXZ010000000
VERSION     DASVXZ010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405832"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..>2359)
                     /locus_tag="VF788_09130"
     CDS             complement(116..>2359)
                     /locus_tag="VF788_09130"
                     /inference="COORDINATES: protein motif:HMM:TIGR03607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like protein"
                     /protein_id="HEX8934339.1"
                     /translation="RELATHGRRLSVTIDIIAGTSAGGINGICLGKVIARNGSQDKLK
                     QLWIDEGDLKKLLRAPAIGGWRLQAVLAALPVIARPRLAGSPLRGERMSQLLFEAISD
                     MDRQRGQLRSLIKPGATLDLFVTTTDLHGFEVLVPTGVGGASQRDRNYAQVMEFQSGP
                     EGSAFDAGSAGALAFAARATSCFPGAFPPVSLASFEAELAGGSLFGWRRKAAAPRGDA
                     AARIVRSFRNSYAENRAWAENAWFVDGGLLDNAPFDLVVQAISDKPAQSEVIRRIVYI
                     QPDPGEPLEKQSTDAHADARAPAPGWLPALWQGVSRVRASHPVLRELLGIREMNTRIG
                     AIGAIAASQQNQVNTVISHAWERTNPSNATSPWDMHDQKSVQALSEQVHEGVKQQIGL
                     NYAGYCLLKAEVAGRRFADELAKNFAYPPTSNRTSFLRSAIAAWASNRSDWKNLDTTA
                     LMQFFGPIDIPYRERRLLFILAGVNDLYSQADLDPPSGLDRACLNALKTKAWDLLEKL
                     RRAPQTAAKGARKYAGFLDHQTLNDATLLSDPRTFAAKRADDFQRLFEGYASSLKRVP
                     SIGSQPLWEAYVQTTQTWRDTYGERQALLSRYLGFPLWDALIFPTVTLSRLPQFTPIG
                     VSQFSPLAARAIPAPPAGPGNPGRKLRGVSMQHFGAFTDAAWRENDYLWGRLDAAELI
                     LRMLRQDSSSPGQQITPATAEEAIELAGREHLQAALSAIIDAEQGLQRIPEITAYLRT
                     RIKNIIQ"
BASE COUNT          385 a          733 c          792 g          449 t
ORIGIN      
        1 acgcattctt tcccgcgcac cccagcggag atgatcgcaa cagcgggcgg gggtcatcgc
       61 tgggatcgct tcgaacaggt cgaaggggtc gaccatctct ggtagctcag atcggttact
      121 ggatgatgtt tttgatgcgc gttcggaggt atgccgttat ttcggggatg cgttgcagac
      181 cttgctcggc gtcgatgatc gcgctgagcg cggcctgtag gtgctctcga ccagccagct
      241 cgatcgcttc ctcggcggtg gccggggtga tctgttgtcc cggggaagag ctgtcttggc
      301 ggagcatgcg caggatgagc tctgcggcgt cgagacgtcc ccacaggtag tcgttctccc
      361 gccaggcagc gtcggtgaag gcaccgaagt gctgcatgct gacgccgcgc agcttgcggc
      421 ccgggtttcc cgggcccgct ggtggcgcag gtattgcccg tgccgccagc ggactgaact
      481 ggctgacgcc gatcggggtg aactgcggca gccgggacaa ggtgacggtg ggaaagatga
      541 gcgcatccca gagcgggaag ccgaggtacc gggagagcag cgcctgccgt tccccatacg
      601 tgtcgcgcca cgtctgcgtc gtttgcacat aggcttccca gagtggctgg ctgccaatgc
      661 tggggacccg cttcaggctc gacgcgtagc cctcgaagag cctctggaag tcgtcggcgc
      721 gcttggcagc gaaggtacgg gggtcggaca gtagagtcgc gtcgttgagg gtttgatggt
      781 cgaggaaacc cgcatattta cgcgcgccct tggctgcggt ctgcggcgct cgccgcagtt
      841 tctccagcag gtcccaggct ttggttttga gggcattgag gcaagcccga tccagcccac
      901 tcgggggatc taggtccgcc tgtgagtaca ggtcgttgac cccagcgagg atgaaaagca
      961 gtcgtcgctc gcggtagggg atgtcgatgg ggccgaagaa ctgcatcagg gcggtggtat
     1021 ctagattttt ccagtcactt cggttgcttg cccaggccgc gatcgcgctt cgtaggaagc
     1081 tggtccggtt tgaggtgggc gggtaagcga agttcttggc gagttcgtca gcgaaccgcc
     1141 ggcctgccac ttcggctttc aggaggcagt accccgcgta attcaggccg atctgctgct
     1201 tgaccccttc atgcacttgc tcggagagag cctgcacgga tttctggtcg tgcatatccc
     1261 acgggctcgt ggcgttcgac gggttagtcc gctcccatgc atgactgatc acggtgttga
     1321 cctggttctg ctgagaggcg gcaatcgcgc cgatcgcacc gattcgggtg ttcatctccc
     1381 gaattcccaa cagctcacgc aacaccggat ggcttgcccg gaccctgctg acaccctgcc
     1441 agagcgccgg caaccatccc ggggcggggg cacgggcgtc agcatgggcg tcggtggact
     1501 gtttctccag gggctcgccg ggatccggct ggatatagac gatccgccgg atcacctcgc
     1561 tctgtgccgg cttgtcgcta atcgcctgaa ccacaaggtc aaacggagcg ttgtcgagca
     1621 gcccaccgtc gacgaaccag gcattctccg cccaggctct attctcggcg tagctgttgc
     1681 ggaagctacg gacgatgcgg gccgccgcgt cccctcttgg ggcagccgct ttccggcgcc
     1741 acccaaacaa gcttccaccc gcgagctctg cctcgaagct cgccaggctg accgggggga
     1801 acgctcccgg gaagcatgag gtggcacgcg ccgcgaaggc cagcgccccg gcgctgcccg
     1861 cgtcgaacgc gctgccctcc ggtcccgact gaaactccat cacctgcgcg tagttgcggt
     1921 cgcgctgact ggcacccccg acgccggtgg gtacgaggac ctcaaagccg tgcagatcgg
     1981 tagtggtcac gaagaggtcc agcgtcgcgc ctggcttgat gagggagcgc agctgccccc
     2041 gctggcggtc catatcgctg atcgcctcga acagcagttg ggacatgcgt tcaccgcgca
     2101 gcggggagcc ggccagcctc gggcgggcga tgacgggcaa tgccgcgagg actgcctgga
     2161 gacgccagcc accgatcgca ggggcacgca ggagcttctt caggtctccc tcgtcgatcc
     2221 atagctgctt gagcttgtcc tgggacccgt ttcgagcgat gaccttgccc aggcagattc
     2281 cgttgatccc accggccgag gtacccgcga tgatgtcgat agtcaccgac agccggcgac
     2341 cgtgcgtcgc cagctcacg
//
LOCUS       DASVXZ010000444         7271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1278390, whole genome shotgun sequence.
ACCESSION   DASVXZ010000444 DASVXZ010000000
VERSION     DASVXZ010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7271
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1278390"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1643
                     /locus_tag="VF788_09135"
     CDS             138..1643
                     /locus_tag="VF788_09135"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEX8934340.1"
                     /translation="MEPVLEMREVSKRYPGVLAIDRVNLTVLPGEVHVIVGENGAGKS
                     TLMKLLSQVERPDDGVVLVQGKPVEFRGPRFAHLVLGVSMVHQELALAPHLTVAENLC
                     LGEESSWLGVLSRRAERSRASTLLARVNLAVDPGRLVGTLPVADRQRIEIAKALGGSP
                     RVVIMDEPTATLTQAEISDLFEVIAELKAQGIAIVYISHRLEEVARLADRVTVLRDGR
                     VVQTLPSAQASSECLIRAMVGREIGNLYPKPKVEIGDVLLRAEGISRRGKIVNLVDCT
                     VQVRAGEIVGFAGLVGAGRTELARAIFGADLPDAGRVLLRGREVHIHSPQQGIEAGLG
                     YLTEDRQGEGLAMQLPVVQNITLANIPLRFGAINLRAERKTALSRREQLGIKTPSITR
                     PVRLLSGGNQQKVMVAKWLETKAQVLFFDEPARGIDVAAKAEMFDLIGRLTSEGRGIV
                     IISSYLPELLNMCDRIIVMRAGRIAGELAREKFSEERIMQLATGATSRPVG"
     gene            1730..2692
                     /locus_tag="VF788_09140"
     CDS             1730..2692
                     /locus_tag="VF788_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934341.1"
                     /translation="MSEAWRDRARFAVSQLAAAGSVMVLFVYLSFASDAFLSASNLFN
                     IGVQSAVVAIIAIGMTIVIITAGIDLSVGSVAALSGVLGAMMVVKHGVPIPLAIAGGV
                     AIGGIAGLVNGLLVTRAGMAPFIATLGMLSVARGLGYIVTGSVAVSGEPVEFKLLGQG
                     KLGSLPIPILALVVVALAGHFVLTRTKLGRYAYAMGSNIDAARLSGIPVKRYLTIIYI
                     ISGILAGLAGMIAASRVDSGQPNFGIGLELDVIAATVIGGASLFGGEGKIIGTLLGAL
                     LIALIRNGSVLLDVNTFYQQVIIGVIIWIAVFWDQYRRRRAASA"
     gene            2733..3755
                     /locus_tag="VF788_09145"
     CDS             2733..3755
                     /locus_tag="VF788_09145"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX8934342.1"
                     /translation="MRVRLSAALAYVAAAILLAASCSGITVPGSGADRGPKVKANGPI
                     TLAVVPKAIGLDFWDSVRKGSQCAVSKMTGVTLQWDGVTAETDVTGQVNLLQNFLTRQ
                     VDGLVYAATDAKVLAQLTQDALSRNVPVINIDSGTNPQPHTVPVFATDNVVAARKAAD
                     LLAEALGAGEHKVAFIPFRPGTVTNDERTTGFKQGLAMHPNLKLVAEQISNSDPNIAL
                     SVTENILTAHPDLDGIFAASEPGVVGAVNALNQAGKAGKVKFIGWDASPDEIKGITSG
                     AITALVVQNPFRMGFDAVNAMVQTVRTGHITTSEDTGVTFVTQRNVNDRQVQAVLNPS
                     CENPPT"
     gene            complement(4111..4692)
                     /locus_tag="VF788_09150"
     CDS             complement(4111..4692)
                     /locus_tag="VF788_09150"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX8934343.1"
                     /translation="MRLDICSSDDLLKGSSRMAYNNEERPPMQHREGIRKMGWAGACL
                     ALASSIVFLAKPIPAGAQDAYPAHQDGYRHFAVYMSGDELRDGGDHGAWGMARLDLDA
                     ARETACYLISWNDLDGAVTAFHLHAAPRHNDGPHWIDFFNDQHFNGPRNSTSGCVHTP
                     RGKILDVINDPSDYYFNIHTTAHKDGAIRGQLF"
     gene            complement(4877..5749)
                     /locus_tag="VF788_09155"
     CDS             complement(4877..5749)
                     /locus_tag="VF788_09155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934344.1"
                     /translation="MGHDEQLQRSTRPDGVPSRGSASLITPPTEAHRASWLTPRLAML
                     ALTIILLGTAAGLAGALVLPKTYGARAEILYAVGDAQQGGDPLKQDRQLSTQLVLLKS
                     RAVLGPIAQKQARQFEDLDKDVNVSILENSNVMQVEAHASTEPAALQTLQAVVTGYLA
                     LAGKPSGVVGNLEAQLAESRLNTAQLQTRVQQLTSAVLAGTANQTTLNDARAQLTASL
                     DREKAIQARIDDATLTGQVGPVAQVLTPPYSLPDPVYPRPLTAAGTGALVGLVVAGGM
                     LAIGAARTSSGRRR"
     gene            complement(6040..>7271)
                     /locus_tag="VF788_09160"
     CDS             complement(6040..>7271)
                     /locus_tag="VF788_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX8934345.1"
                     /translation="RAGAIAQRHPTVRAMDALIRADRVLTGRAGHGYTDGGVIVEGDR
                     ITAVGTRTALQARSGDRMRVLSYPRSTLMPGLINSHVHLAFDTSGDPVRAFQASTPEQ
                     LLADMATRACLALRAGITTIRDLGDNGLVFRVRDEIASGARSGPRILASGPPLTVAGG
                     HCWFFGGVVDDDDSIRAMVRRNAADGADLIKVMASGGQMTPGGAKMWQSQFTAEQLRV
                     VVTEAAQAGLRVAAHAHGADAITAAVEAGVHTVEHCTWMSGPGQYDRREQIVRKMAAA
                     GIFACAALSHNWSSLYDRLGPTRAAETFGRLAWMDGLGVPFIAGTDAGLPGAVFDNMA
                     GALGLYSWLGFPADRIIEFATVNAAAALGLADTTGQLAPGLVADLLVVEGDPLTTLDA
                     LHNVRMVMTSGTLHDCS"
BASE COUNT         1330 a         2283 c         2355 g         1303 t
ORIGIN      
        1 aacgagacct ggacaccgaa atgggcgcag cgctcaaccg tgcttgtgaa cggtcgccga
       61 gcccatgcca tatcaagcag gagctcggga aaacttcagg atccaagcgt caaaaatgaa
      121 ttggtggcgc cacggtgatg gagccggtgt tggagatgcg cgaggtttcc aagcgctatc
      181 cgggagtgct cgcgatcgac cgggtcaacc tgacggtact gcccggtgag gtgcacgtca
      241 tcgtcggcga gaacggtgcc ggcaagtcga ccttgatgaa gctgctgtcg caggtcgagc
      301 gaccggatga cggtgtcgtt ctggttcagg gcaagccggt cgagttccgg ggtccgcgct
      361 tcgcccatct ggtgctcggt gtgtcgatgg tgcaccagga gctcgcactc gctccgcacc
      421 tgacggtggc ggagaacctg tgcctgggcg aggagtccag ctggctgggt gtgttgtccc
      481 gtcgggcaga gcgcagtcgc gccagcacgt tgcttgcccg ggtcaacctc gcggtggatc
      541 caggccgtct cgtgggcacg ctccccgtcg ccgatcggca acggatcgag atcgcgaagg
      601 cgctcggtgg aagcccccga gtcgtgatca tggacgaacc caccgcgacg ctcacacagg
      661 ccgagatcag cgatctgttc gaggtgatcg cggagttgaa ggcacagggc atcgcgatcg
      721 tgtacatctc ccatcgcctc gaggaagtgg cccgcctagc cgaccgcgtc accgtcctgc
      781 gcgacggcag ggtcgtccaa acactgccct cggcacaggc gtcgtccgaa tgcctgatca
      841 gggccatggt cggccgggag atcgggaacc tctatcccaa accgaaggtc gagatcggag
      901 acgtgctgct gcgagcagaa ggcatctccc gccgcggcaa gatcgtcaac ctcgtcgact
      961 gcacggtgca ggttcgggcc ggcgagatcg tcgggttcgc cggtctggtc ggcgccggcc
     1021 ggaccgagct cgcgcgggcg atcttcggcg ccgacctccc ggatgcgggt cgcgttctgc
     1081 tgcgggggcg cgaggtccat attcactcgc ctcagcaggg gatcgaggcg ggactcggat
     1141 acctgaccga ggatcgtcag ggtgaggggc tcgctatgca gctcccggtc gttcagaaca
     1201 tcaccctggc gaacattccg ctccgattcg gtgccatcaa cctgcgcgcg gagcgaaaga
     1261 ccgcgctgtc ccggcgggag caactgggca tcaagacgcc ctcaatcacc cgaccggtcc
     1321 gcctgctctc tggcggcaac cagcagaagg tcatggtggc gaagtggctg gagaccaagg
     1381 cccaggtgct cttcttcgac gaacccgcac gcggaattga tgtcgccgcc aaagccgaga
     1441 tgttcgacct gatcgggcgg ttaaccagcg aggggcgcgg gatcgtcatc atcagctcct
     1501 acctcccgga actcctcaac atgtgtgatc gcatcatcgt catgcgcgct ggccggatcg
     1561 ccggtgagct ggcccgcgag aagttctccg aggagcggat catgcagctg gctaccggag
     1621 ccaccagtcg gccagtggga tagtcccggt cagacggaac aacggcagcg ggcagggggc
     1681 gctcatgagc ggtgcgagaa caacgggatc agggcgacgc ctcagcccgt tgagcgaggc
     1741 ctggcgcgac cgggcgcgct tcgcagtgtc tcagctggcc gcagccggct cggtaatggt
     1801 gctgttcgtt tacctgtcct tcgcgtccga tgctttcctc agtgcaagca acctgttcaa
     1861 catcggtgtc caatctgcgg tggtggcgat catcgcgatc ggcatgacca tagtgatcat
     1921 cacggctgga atcgacctgt ccgtcggctc ggtggccgct ctgtcgggcg tgctcggcgc
     1981 catgatggtc gtgaagcacg gcgtccctat tccgctggcc atcgccggtg gcgtggccat
     2041 cggaggcatc gcgggcctgg tcaacggcct gctcgtgacg cgggcgggaa tggcgccgtt
     2101 catcgctacg ctgggtatgc tcagcgtagc gcgcggcctc ggctacattg tgactggttc
     2161 tgttgctgtt tccggggagc ccgtggagtt caagctcctt gggcagggaa agcttggatc
     2221 gctacccatc ccgatcctgg ctctcgtcgt cgtggctctg gccggacatt tcgtcctcac
     2281 ccggaccaaa ctaggacgat atgcatacgc catggggtcg aacatcgacg ctgcgcggct
     2341 ttccggaatt ccagtgaagc gttacctcac gataatttac atcatttccg gtattctggc
     2401 cggcctcgca ggaatgattg ccgcgtcccg ggtcgactcc gggcagccga acttcggtat
     2461 cgggctcgaa ctcgacgtga tcgccgctac cgtgatcggc ggggccagcc ttttcggcgg
     2521 tgagggaaag atcatcggca ccttgctcgg tgccctcctg atcgcgttga tccgcaacgg
     2581 atccgtactc ctggacgtca ataccttcta tcagcaggtc atcatcggag tgatcatctg
     2641 gatcgccgtg ttctgggacc agtaccggcg acggcgggcc gcgtcggcgt gaaccacacg
     2701 tcggcgagaa tcttcaagaa agatgaggtg ccatgcgtgt caggctttcg gcagcattgg
     2761 cctacgtggc cgctgccatc ctgctggccg caagctgctc ggggatcacc gtgcccggct
     2821 caggagctga caggggcccc aaggtgaagg ccaacggccc catcaccctc gccgtagttc
     2881 ccaaggctat cgggttggac ttctgggaca gcgtccgcaa ggggtcgcag tgcgcggtgt
     2941 cgaagatgac cggcgtgacg ctccagtggg acggggtcac tgcggagacc gacgtcaccg
     3001 gccaggtcaa tctgttgcag aacttcctga cccggcaggt ggacggactc gtctatgccg
     3061 ccaccgatgc gaaggttctg gcccagctca cccaagacgc gctgagccgg aatgttcctg
     3121 tgatcaatat tgattccggg acgaatccgc agccgcacac cgtgccggtc ttcgcgaccg
     3181 acaacgtcgt ggccgcgcga aaggcggctg atctgctcgc cgaagccttg ggcgcaggtg
     3241 aacacaaggt tgctttcatt ccgtttcgac ccggaacggt gaccaacgac gagcgcacca
     3301 ccggctttaa acagggactc gcgatgcatc cgaacctgaa gttggtggcc gagcagatca
     3361 gcaacagcga ccccaacatc gccctgtcgg tcaccgagaa catcctgacc gcccaccccg
     3421 acctcgacgg tattttcgcg gcaagcgaac ccggcgtggt tggtgccgtc aatgctctga
     3481 atcaggcggg taaggccgga aaagtcaagt tcattggttg ggatgcctca ccggatgaga
     3541 tcaaaggaat cacgtcgggc gccattaccg cgctcgtggt tcagaacccg ttccggatgg
     3601 gcttcgacgc ggtcaacgcg atggtgcaga cggtgcggac cggccacatt acgaccagcg
     3661 aggacaccgg cgtcaccttc gtcacccagc ggaacgtcaa cgatcgtcag gtccaggcgg
     3721 ttctcaaccc cagctgcgaa aacccgccca cctgagccga ctcgacgatg cggcatcaca
     3781 gggccgctcg gcaggttgtt cgcttggtac caggcagagc cgcttcggcc aagttgccgc
     3841 ggatgctcgg cgggtgggag ctctggagcg ctccggctgt cattgcgggg cgtctcccgg
     3901 gacttgggcc tgtgaggttg aaatctgtcg gaacggtgca tcctccggag tgccgtgtgc
     3961 gcactgtcgc gaggagaagc gcaccggacc aagacccggc cgccgaaact cgcgccgggt
     4021 cttggtcctg ctggagctgg aaacccgggc gccggggctg gtcacacgac gcgcgagctg
     4081 gcacccgaga ccgcaggtgg atggcctggc ctaaaacagc tggccgcgga tcgctccgtc
     4141 tttgtgcgca gttgtgtgga tgttgaaata ataatcggac ggatcgttga taacgtccag
     4201 aatcttccct cggggggtat ggacacaccc tgaggtcgag ttccgtggcc cgttgaagtg
     4261 ctggtcgttg aagaaatcga tccaatgcgg gccgtcgttg tgacgagggg cggcgtggag
     4321 atgaaaagcg gtcactgcac catcgagatc gttccagctg atcaagtagc aggcggtctc
     4381 acgtgctgcg tcaagatcga gccgtgccat gccccaagct ccgtggtctc ctccgtcgcg
     4441 gagctcatcg ccggacatgt agacggcgaa atgacggtag ccgtcctggt gtgctgggta
     4501 ggcgtcctgc gcacccgccg ggatcggctt ggcgaggaag acgatcgacg aggcgagcgc
     4561 cagacacgct ccagcccagc ccatttttcg gatgccttcg cggtgctgca tcgggggcct
     4621 ttcttcgtta ttgtatgcca tcctcgaact tcctttcaga agatcgtcag atgagcagat
     4681 atccagtctc atcgcgttct ggccaacgcc gcataagata attaaaaggc gaaccagaaa
     4741 ccgtacagca aattgctccc cgaccggctc ctagcttaag cccaaccccc gtccagcaaa
     4801 agtgaatatt tcataccgtg cgccagtaat ttcacacgta ttgacgtgtt gttaatgaca
     4861 tatcctgaac cgaaggtcag cgccggcggc cactcgatgt gcgggcggca cctatcgcca
     4921 gcatcccgcc agccacgacc aacccgacca gcgcaccggt gccagccgcc gtcagcggcc
     4981 gcgggtacac cggatccggt agcgagtagg gcggtgtcag aacctgggca accggtccca
     5041 cctggccggt gagtgtcgcg tcgtcgatcc gggcctggat cgctttctcc ctgtccaggg
     5101 atgcggtgag ctgcgcccga gcatcattga gagtggtctg gtttgcggtc ccagccaaca
     5161 ccgcagatgt gagctgctgc acccgcgttt gaagctgggc ggtgttcagg cggctttcag
     5221 cgagctgggc ctcgaggtta cccaccaccc cgctgggctt gccggcaaga gcgaggtaac
     5281 cagtcacgac ggcctggagc gtctgcaacg cggccggctc agtggaagca tgcgcctcga
     5341 cctgcatgac gttgctgttc tccaggatcg agacgttgac gtccttatcg aggtcctcga
     5401 attgccgggc ttgtttctga gcgatcgggc cgagcacggc ccggctcttc aacaaaacca
     5461 attgagtgga cagctgccga tcctgcttca gaggatcgcc gccctgctga gcatcgccga
     5521 cggcatagag gatctccgcg cgggctccgt aggtcttcgg caggaccagc gcgccagcca
     5581 gccccgcggc ggtacctagc aggatgatcg tcaacgccag catcgccagg cgcggcgtca
     5641 gccaactggc acggtgagct tcagtggggg gtgtgatcag actcgccgaa cctcgcgacg
     5701 gcactccgtc gggccgggta gaccgctgca gttgctcgtc gtgacccatc gtgcgtccag
     5761 gtgactcgtc ggcctgtact gaagatctac cagatagccg ggaccggcac gaaaggcatg
     5821 accgcgccgg agacagtcag cgtggccaga ccgagatcgc gcagaacctg cggggagctg
     5881 ctcgtgctca cttaccccac cagtatatgc acacggccgg ttctgttgat caccagccac
     5941 acacggtgtg tagtgacacg ggtaacagac gtgaaccgag cgccagcttc acgaccagga
     6001 cgccgccggg ctcgcaccga cgccaccccg gtgggccagt catgaacagt cgtggagcgt
     6061 tcctgacgtc atcaccatcc ggacgttgtg taatgcgtcg agcgtcgtta atgggtcacc
     6121 ttcgacgacg agcaaatccg cgaccagacc cggggcgagc tgccccgtgg tatcggcgag
     6181 cccaagggcc gcggcggcgt tgacggtggc gaactcgatg atgcgatcag caggaaagcc
     6241 gagccaggag taaagcccca gtgcaccagc catattgtcg aaaaccgcgc cggggagccc
     6301 agcatcggta ccggcgatga acgggacacc gagaccgtcc atccacgcca gccgcccgaa
     6361 ggtctcagcc gcccgggtgg gcccgagccg gtcgtacaag gatgaccagt tgtggctgag
     6421 agcggcgcac gcgaaaatcc cggcagcggc catcttgcgc acgatctgtt cgcgccggtc
     6481 gtactgacct ggtccactca tccaggtgca gtgttcgacg gtgtgcacgc ccgcctcgac
     6541 tgcggcggtg atggcgtcgg cgccgtgggc gtgcgcggcg acccgaagcc ctgcctgcgc
     6601 agcttcggtg acgactacgc gcagttgctc ggcagtgaat tgggactgcc acatcttggc
     6661 cccgcccggg gtcatctgcc cgccactggc catcaccttg atcagatcgg cgccgtcggc
     6721 cgcgtttcgc cgaaccatgg cacggatgga gtcgtcgtca tcgaccacgc cgccgaaaaa
     6781 ccagcagtgg ccgcccgcca cggtcaaggg tggtcctgac gccaggatgc gcggcccgga
     6841 gcgggcgccg gaggcgatct cgtcgcgaac ccggaagacc agaccgttgt ctcccagatc
     6901 ccttatcgtg gtaataccag ctcgcagcgc caggcaggcg cgggtggcca tgtccgcaag
     6961 cagctgctcc ggggtggatg cctgaaacgc ccgcacagga tccccgctgg tgtcgaacgc
     7021 gagatggaca tggctgttga tcagtccagg catcaaagtc gaccgggggt aactcagcac
     7081 ccgcatgcgg tcgccgctac gcgcttgtag cgctgtccgg gttccaacgg cagtgattcg
     7141 gtccccctcg acgatgacac caccgtcggt gtacccgtgg ccggcacgtc cggttaggac
     7201 ccggtcagcg cgaataagag catccatcgc ccgaactgta gggtgccgct gcgcgatggc
     7261 gcccgctctc g
//
LOCUS       DASVXZ010000445         3712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_406180, whole genome shotgun sequence.
ACCESSION   DASVXZ010000445 DASVXZ010000000
VERSION     DASVXZ010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3712
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406180"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..1614)
                     /locus_tag="VF788_09165"
     CDS             complement(145..1614)
                     /locus_tag="VF788_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015785778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934346.1"
                     /translation="MTSPKGQERCCQACGTRLARDNRSRLCSPCSRHEVVATSAPIKQ
                     DAFWQRAALRDALESRHFGQVLNAYRYEHRPILTQAKVGRWLGLTQAQVSRLERTAQP
                     THDLNKLDQWARALRIPQRYLWFQLSQQPADAYAWSCDAPSLDEKFETGGENVQRRQL
                     LRAAAAGAVSVGSSSFGWFSTRTVPGSGARAVGMTDVQIIREMTQIFRRLDNRFGGGH
                     ARSAVTNYLGSDVVPLLREGRYRDSLRRELSTAVAELNQLAGWMAYDVGDSGSGRRHL
                     QNAMHLCQDVGDDALAGEMLAGMSHQAAFLRSAALATDLARAAKDNAKRAGVPVLVSE
                     SAVMEAHGLALANDAHGCLAALRESEQAFAAAEDRDRPQWLAYFDGAYLAAKFGHCFR
                     DLGRPTEAERFARRSLDMIDGYDRGRLFNLALLASILADQGRVEEACETGSAAVRLAS
                     EVQSVRTVAYLVDLSHRLAPFRAEPAVRVLDERIGLLAQ"
     gene            3041..3712
                     /locus_tag="VF788_09170"
                     /pseudo
     CDS             3041..3712
                     /locus_tag="VF788_09170"
                     /inference="COORDINATES: protein motif:HMM:NF042633.2"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator"
BASE COUNT          738 a         1151 c         1105 g          718 t
ORIGIN      
        1 gaggcccgcc gacattaacg aggctgctcg cgtcgagtgg atcaacctgg actcagtccg
       61 ctaccgcatc gcccagggcg agatcatcgg cgccggtact cagatcgggc ttctgcacct
      121 cctcgcgttt catgcttccg agtctcactg agccaacagc ccgatccgct cgtctagcac
      181 tcgcaccgcc ggttcggccc ggaacggcgc gagccgatgc gacaggtcga cgaggtaggc
      241 aaccgtgcgg actgactgca cttcggaggc aagacgcacc gcagccgagc cagtctcaca
      301 ggcttcttcg accctgccct ggtcagccaa aatcgacgcc agcagcgcca ggttgaacaa
      361 tcgacctcgg tcgtaaccat cgatcatgtc gagcgagcgt cgtgcgaacc gttcagcttc
      421 agtcggacgc cccaggtcac ggaagcagtg cccgaacttc gccgccaagt aggcaccgtc
      481 gaagtaggca agccactgcg gccggtcccg atcctccgca gccgcaaagg cctgctcgga
      541 ctcgcgaagg gcggccaagc acccatgtgc gtcgttcgcg agggcgagtc catgtgcttc
      601 catgactgcc gactcggaga ccagcaccgg tacccccgct cgcttggcgt tgtctttggc
      661 ggctcgtgcc agatccgtgg ccagagcggc ggagcgcagg aacgctgcct gatggctcat
      721 tcctgccagc atctcgccag ctaatgcgtc atcaccgacg tcttggcaca ggtgcatcgc
      781 attctggaga tgccgacgtc cggaaccgct atcgcccacg tcgtaagcca tccacccggc
      841 caactggttg agctcggcaa ccgctgtgga cagctccctg cgcaggctgt cgcggtaccg
      901 gccttcacgc aacagaggga ctacgtcgga gcccaggtag ttggtgacgg ctgagcgagc
      961 gtgtccccca ccgaatcggt tatccagccg gcggaagatc tgcgtcattt ctcggatgat
     1021 ctgcacgtcc gtcataccca ccgctcgcgc gcctgacccc ggtacagtcc gcgtgctgaa
     1081 ccagccgaac gacgaactgc cgacggatac tgcacctgcc gccgcagctc ggagcaattg
     1141 gcgccgttgc acgttctcgc ctcctgtctc gaacttctca tcgaggctag gggcatcaca
     1201 cgaccatgcg tatgcgtcag ctggttgttg cgataactgg aaccagaggt agcgctgagg
     1261 tatacgcagg gcacgagccc actggtcgag tttgttcagg tcgtgagttg gctgcgcagt
     1321 gcgctccaaa cggctgacct gggcctgggt cagtccgagc cagcggccga ccttcgcctg
     1381 ggtgaggatc ggccgatgct cgtagcggta ggcgttgagc acctggccga aatgccgaga
     1441 ctccagcgcg tctcttagcg ccgctcgctg ccagaaggcg tcctgcttga ttggggcact
     1501 ggtcgctaca acctcgtgac gggaacacgg gctgcacagt cgagagcggt tgtcacgcgc
     1561 cagccgtgtt ccgcacgctt ggcaacaccg ctcttggccc ttcgggctcg tcaccaccga
     1621 cctccgtgtc tgtcgggccg aatcctagcc gccgtgcagg tcggaccacc tgcggttatg
     1681 catgatctgg atatttcaat cagttttgtc gtttgttcgt cgcgtcttct ttggaatcgt
     1741 gatcggccgg acgcgatgga ggcaacgtga tcaaccaggg caccaacctg tggccggtgg
     1801 gacttaccgc cgcagtggta cgagggaaca ccgcgctgcg gatatggatc gacgacgaca
     1861 tcaggtgcgt gtgcatcgag atggacggaa caccgagccc cgtgctgtta ggtgtaaccc
     1921 cgtccggagc tgtgaacctg cacagagcga tcaccatcgg ccttgcggac ttagcatctg
     1981 gtcagcagag aaacaccgga tatatcaact cggtgggcac agatggtcaa cgatgatcgt
     2041 agtagctacc ggcattaccg ggaggctgta tatgcacgac ttaatcgata taccgtcgcg
     2101 ctcgacagct cggatgaccg gatggtcgca atcattgccc gcgccgagct accccgttat
     2161 atgcggtatc gggtcacctt gcttgccaaa cacgaggcga cggccagcgg gaagtgcccc
     2221 acctgttccc gatggtggcg cgcggtctcc gcgccctgtg gcacgcggaa gtgggcgcac
     2281 gcattcctga ctattgcacc agcgagaacc accgtgccat cgagccggat agacgacggc
     2341 gtgcctgccg cgcgggagca gacccagtcg gttgctacgt gagccagaaa ccgtagtaac
     2401 cgccgcacgg tcggcagggt gaatatggcg tcccccgaac gccatgctgc tgttctcacc
     2461 ctgccgaccc tccaacccaa ctagtaaggg tcgcgacacg aacctgacag agttcattga
     2521 caacacaagc gccatccgaa tggaaattcg tgcgaagtca cgtcaataga cgctgagcac
     2581 actccaccac atcgccaggt acgcggcgaa acctccggca ccagcattga tgagctggtg
     2641 ccattcctga gtgtcgcgtg agatcatgcc aagtctctag ccaactcctt tcatgccaca
     2701 acacagcaaa ttatttcctg cattcgatcc ttgcttgtgt tgtcttgtcg cggcttcacc
     2761 gtgcatgaga ggaagcttct ttggtggagt caatctcagc ccaggaatgg gccgacgtca
     2821 agctgccgct tctccagttt ggagcgagga gaagtggcag cgggtcgcca cattgctcgg
     2881 tatccgatgg ttacccggcg acgaatcagc agtcaacgat tccgatgagt cccttgaggc
     2941 cgcatgagca gcggggactt caataataat tcgctaccac ggtgggtcag ccagctcgca
     3001 gagaaggctg ccgcaaccag gcttcgagcg atggcgccag atggtggagg gcgcaggcgg
     3061 ctgcacggct cctatccgcc tcgtcggcaa ctcggcgacg atcgatgcag acaccggcga
     3121 ggtactcgat acatattcga cccgagatga gccgaccgaa taccttctca ttgcgtgtgg
     3181 gaatcgtcgg gcatcaaggt gtgagccgtg cgcgagggtg tactcggatg acacctttca
     3241 tcttattcgc tctggcctga ttgggggcgg gacataccat catcggtcgc cacacatccg
     3301 atcgtattca cgacgttcac tgctccgccc tttggtgcag tacacaccag ggtcactaat
     3361 ccaaacggcg tcgtgaagcc atgccatccc aggcgtgatg gaccctcgtg tgccgtacgc
     3421 caaacggagg gtgactcgct actcgggcag gaactcgatc caagtaatta cgactacgct
     3481 ggctcagtac tctggaacaa tcgcgcggga gagctgtggc acatgttcat ggtgtacctg
     3541 cgaaggaatt ttgccgagat gctaggagtt tcgcgctcga atttgactaa ggtactgcgg
     3601 gtcgaatatg caaaggtcgc cgagtaccag actcgcgggg tagtacattt tcatgccgtg
     3661 atccggctgg acggccccga aggtccggat gcacatccac ctattggagt ag
//
LOCUS       DASVXZ010000446         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1457884, whole genome shotgun sequence.
ACCESSION   DASVXZ010000446 DASVXZ010000000
VERSION     DASVXZ010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1457884"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..988)
                     /locus_tag="VF788_09175"
     CDS             complement(<1..988)
                     /locus_tag="VF788_09175"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934347.1"
                     /translation="MASFDYDLAIIGAGSAGLTAARVGRFFAKRVALIDKDRLGGDCL
                     NYGCVPSKALIKASRVAHETATAQRWGLSAPHVSTDLAAVNARVQQAITEIAKLDDAE
                     ALSELGVDVLLGGATFRDPHTLRVADRDITAKFILIASGSRPAVPAIDGLAEVGYLTN
                     EDVFDLSALPARLAVIGGGPIGVELAQALHRLGSAVTVLQRGPHLIPRDDVDVIDILE
                     RQFTDEGMDVRLNCLPHAARREDGHTVLTLGAGELHVDAILCAVGRVPNVEALGLDAA
                     GITTNERGIGINDLLQTSQPHIYAVGDVTGGPAFTHYAGHQATHAVRNMFVPI"
     gene            complement(1051..1446)
                     /locus_tag="VF788_09180"
     CDS             complement(1051..1446)
                     /locus_tag="VF788_09180"
                     /inference="COORDINATES: protein motif:HMM:NF025279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin-like family protein"
                     /protein_id="HEX8934348.1"
                     /translation="MRDLATGCPIGLIACGFSPPEALAALADYLSWPGPFLVDEQRRL
                     YGLLGMRSARLWQVYSPGTLTRYALAAARGHHLPRPVEDIRQMGGDALLCNGTVIRRW
                     LPRTPDDRIHPARLLHAATDRSPYGDRLP"
BASE COUNT          250 a          492 c          558 g          242 t
ORIGIN      
        1 tgatcggaac gaacatgttg cggaccgcat gcgtggcctg gtgaccggcg tagtgggtga
       61 acgccgggcc gccggtgacg tcgccgacgg cgtagatgtg cggctggctg gtctggagca
      121 ggtcgttgat gccgatgccg cgctcgttgg tggtgatgcc ggcggcgtcg agcccgagtg
      181 cctccacgtt gggcacccgc ccgactgcgc acaggatcgc gtccacgtgc agttcaccgg
      241 ccccgagggt gagcacggtg tggccgtcct cgcggcgggc ggcgtggggg aggcagttca
      301 gccgtacgtc cataccctcg tcggtgaatt ggcgctccag tatgtcaatc acgtcgacgt
      361 catcgcgggg gatcagatgt gggccgcgtt ggagcacggt caccgcggag ccgaggcggt
      421 gcagcgcctg cgcgagttcc acgccgatcg gaccgccacc gatcaccgcg agccgggctg
      481 gcagggcgct caggtcgaag acgtcctcgt tggtcaggta gccgacctcg gccagcccgt
      541 cgatggccgg taccgccggc cggctgccgg aggcgatcag aatgaacttg gcggtgatgt
      601 cccggtctgc gacacgcagc gtatgcgggt cgcggaaggt ggcgccgccc agcaggacat
      661 cgacgcccag ctcggagagc gcctcggcat cgtcaagttt ggcgatctcc gtaatcgcct
      721 gctgcacccg ggcattgacg gcggccagat ccgtcgagac gtgcggcgcg gacaggcccc
      781 agcgttgtgc tgtggccgtc tcgtgggcga cccgggaggc cttgatcaat gctttgctgg
      841 ggacgcaacc gtagttcagg cagtctccgc ccagccggtc cttgtcgatc agtgcaactc
      901 gcttcgcgaa gaaccgcccc acccgagcgg cagtcagccc cgccgatccg gctccgatga
      961 tcgccaggtc gtagtcaaag gacgccattc gcggttgtcc ccaatcagcc agggtgttcc
     1021 gaagacagac tgcccacacg agcctcgggg ttacggcagt ctgtcgccat aaggcgagcg
     1081 gtcagtggcc gcgtgcagca ggcgcgcagg gtgtatccgg tcgtcgggag tgcgggggag
     1141 ccagcggcgg atcaccgtgc cgttgcagag cagagcgtcg ccgcccatct gccggatatc
     1201 ttccaccggt cgggggagat ggtgaccgcg cgccgcggcc agggcgtacc gggtcagcgt
     1261 tcctggcgaa tacacctgcc agagccgtgc gctgcgcatg cctagtaagc catagagccg
     1321 gcgttgctca tcgacgagga acggaccagg ccagctgaga tagtcggcga gcgcggccag
     1381 cgcctcaggg gggctgaacc cgcaggcgat gagcccgatg gggcagccgg tggcgaggtc
     1441 acgcacctgt accagatgcc gctggcaagg cagtcaatac cggtgccgga tagcggtgag
     1501 cacataccgg ccggacaacc cgccgagatc gattgcccgg cc
//
LOCUS       DASVXZ010000447         3101 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1212847, whole genome shotgun sequence.
ACCESSION   DASVXZ010000447 DASVXZ010000000
VERSION     DASVXZ010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1212847"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VF788_09185"
     CDS             <1..204
                     /locus_tag="VF788_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015785727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl diphosphate synthase family
                     protein"
                     /protein_id="HEX8934349.1"
                     /translation="IWQAAYAELVFQDILFPDLDRRDLWRACEIYAARDRRFGGAVET
                     RPTGAAPTDTAPTESHYSRRTIR"
     gene            201..626
                     /locus_tag="VF788_09190"
     CDS             201..626
                     /locus_tag="VF788_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934350.1"
                     /translation="MSHNKGAPSLTSPRELLDAARTALERFQEVKVDDDGSLSFQHSD
                     VPCAVQAVELVEGLVMLSLTCVVAWDLPDDGELAERVATRAGQGLFGTLGLVRTERGA
                     DLMLRYAFPAAGLSSVPLGTLLMLVVSTASQVRGELLTA"
     gene            complement(658..1053)
                     /locus_tag="VF788_09195"
     CDS             complement(658..1053)
                     /locus_tag="VF788_09195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEX8934351.1"
                     /translation="MSAPRLRSTRQRTAVAKLLDDTDGFRSAQEIHEKLRRRGEGIGL
                     TTVYRTLQTLAEAGEIDVLRTASGEAVYRRCSSHHHHHLVCRHCGRTIEVEGPTVELW
                     AEQIAAEHNFTDINHTVEISGCCADCAAP"
     gene            complement(1050..1421)
                     /locus_tag="VF788_09200"
     CDS             complement(1050..1421)
                     /locus_tag="VF788_09200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006236967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX8934352.1"
                     /translation="MAGVTADPIPHPSLDEHSPGRPAPTPAAARPRATLVAAGELLRA
                     LSAPVRIAIVLQLREGGRCVHELVDALGVTQPLISQHLRVLKSAGVVDGERHGREVVY
                     RLVDDHLSHIVVDAVTHAEEE"
     gene            1532..1894
                     /locus_tag="VF788_09205"
     CDS             1532..1894
                     /locus_tag="VF788_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HEX8934353.1"
                     /translation="MILICRFVVEPAVAQDFLIRARRALALVTAQQGCLGAALGRSPD
                     DTTRWVLVVQFESVVAYRRTLSVFEIREQVVPLLAEALTGEPGGYEVLAEAQGGAVTD
                     HASLLRTDSDRGSESGDR"
     gene            1949..>3101
                     /locus_tag="VF788_09210"
     CDS             1949..>3101
                     /locus_tag="VF788_09210"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019810542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEX8934354.1"
                     /translation="MPADRIETVVSLCKRRGFVFPSGEIYGGTRSAWDYGPLGVELKE
                     NVKRQWWRAMVTGRDDVVGLDSSVILPRQVWVASGHVEVFHDPLVECQSCHKRFRADQ
                     LAEEYAERTGKDLLEGDLSDIPCPNCGTRGEYTEPREFNMMLKTYLGPVESEEGMYYL
                     RPETAQGIFINFQNVVMSARKKPPFGIAQVGKSFRNEITPGNFIFRTREFEQMEMEYF
                     VEPGTDEQWHQYWIDTRTDWYTDLGINRDNLRHYEHSKEKLSHYSKRTVDVEYRFGFS
                     SGQQWGELEGIANRTDFDLTTHSNHSGVDLSYYDQATDSRYRPYVIEPAAGVGRPMMA
                     FLLEAYAEDEAPNAKGGVDRRVVLRLNRRLAPVKAAVLPLSRNADLSPKA"
BASE COUNT          514 a         1013 c         1022 g          552 t
ORIGIN      
        1 atctggcagg ctgcctacgc cgagctggtg ttccaggaca tcctgtttcc cgacctggac
       61 cgccgggacc tgtggcgggc ctgcgagatc tacgccgctc gggaccgccg gttcggtggc
      121 gctgtcgaaa cccggccgac cggtgccgcg ccgactgaca cggcgccaac cgagagccac
      181 tattcgagga ggacgatccg atgagccaca acaagggcgc gccgagtctc acctcccccc
      241 gggaactgct cgatgctgcc cgaacggcgc tcgagcgttt ccaagaggtg aaggtcgacg
      301 acgacggctc gctgagcttc cagcactccg atgtgccgtg cgcggtgcag gcggtggaac
      361 tcgtcgaggg cctggtgatg ctcagcctga cctgtgtggt cgcctgggat cttcccgacg
      421 acggtgagct ggccgagcgg gtcgccaccc gagccggcca gggcttgttc ggcaccctgg
      481 gtttggtacg caccgagcgc ggggccgacc tgatgctgcg ttacgccttc ccagccgctg
      541 gtctgagcag cgtgccgctg ggcactctgc tcatgctggt ggtgtccacg gcctcgcagg
      601 tacgtggaga gctgctcacg gcgtgatgat cagcccatgg acgctgatcc tggggtgtta
      661 gggcgccgcg cagtcggcgc agcaaccgga gatctcgacc gtgtggttga tgtcggtgaa
      721 gttgtgttcg gcggcgatct gctccgccca cagctcgacc gtgggtcctt cgacttcgat
      781 ggtgcgcccg cagtgccggc acaccaggtg atgatgatgg tgtgacgagc agcgccggta
      841 gaccgcctca ccgctggcgg tgcgtagtac gtcgatctcg ccggcctcgg ccaaggtctg
      901 cagggtgcgg tacaccgtgg tcaggccgat gccctcgcca cggcgccgca gtttctcgtg
      961 gatttcctgc gcggagcgga aaccgtcggt gtcatcgagc aacttggcca ccgccgtccg
     1021 ctgccgggta gagcgcagtc gaggcgcgct cattcctcct ccgcgtgggt cacagcatcc
     1081 accacgatgt gcgagaggtg gtcgtcgacc agccggtata cgacttcccg accgtgccgc
     1141 tcgccgtcga ccaccccggc ggatttcagc acgcgcaggt gttggctgat caacggctgg
     1201 gtgacaccca aggcgtcaac caattcgtgc acgcagcgcc cgccttcgcg cagctggagc
     1261 acgatggcga tccgcaccgg tgcggacagc gcccgcagca gctcacccgc cgccaccaga
     1321 gtcgcccggg gacgcgccgc cgccggtgtg ggagcgggtc ggccgggcga atgctcgtcg
     1381 agactcgggt gcggtattgg gtcggcggtc acacctgcca tgcggtctcc ctcgctcgat
     1441 tcaccgatcc ccgagccatc gtaggtgcca cggacatcag ctacccggcg actcgctaac
     1501 gtcattgtcc caccgcgacc ggaggacacc ggtgatcctg atctgtcgct ttgttgtcga
     1561 gcctgctgtg gcccaagatt ttctgatcag ggcgcgccga gcgctcgccc tggtgaccgc
     1621 gcagcaaggc tgcctcggcg ctgcgctcgg ccgctccccg gacgacacca cgcgctgggt
     1681 gctggtggtg cagttcgagt cggtggtcgc ctaccgtcgc acgttgtctg tgttcgagat
     1741 ccgcgagcag gtggtgccgc tgctcgcaga ggcgctgacc ggcgagcccg gtggctatga
     1801 ggtgttggct gaggcacagg gtggtgcggt gaccgaccat gccagcttgc tgaggaccga
     1861 ctccgatcgg gggtcggaat cgggcgatcg ctaatctgag cgtgcgcgtc atccatctgc
     1921 ccaaatgacc atccctggag ttccccaagt gcccgcggat cgcatcgaga ccgtcgtcag
     1981 cctgtgtaag cgccgtggct tcgtattccc cagtggggag atctacggtg gaacccgctc
     2041 ggcctgggac tacggcccgc tcggcgtgga actcaaggag aacgtcaaac gccagtggtg
     2101 gcgagcgatg gtcaccgggc gggacgacgt cgtcggcttg gactcgtcgg tcatcctgcc
     2161 ccggcaggtg tgggtcgcct cgggccacgt ggaggtcttt catgacccgc tggtcgagtg
     2221 ccagagctgc cacaagcggt tccgggccga ccagctcgcc gaggagtatg ccgaacgcac
     2281 cggcaaggac ctgctcgaag gtgacctctc cgacatcccg tgcccgaact gcggcacccg
     2341 cggcgagtac accgaacccc gcgagttcaa catgatgctc aaaacctatc tcggcccggt
     2401 ggagtccgaa gaggggatgt actacctgcg gcccgagacc gcgcaaggca tcttcatcaa
     2461 ttttcaaaat gtggtgatgt ctgcccgcaa gaaaccgccg ttcggtatcg cgcaggtggg
     2521 gaagagtttc cgcaacgaga tcaccccggg caacttcatc ttccgcactc gtgaattcga
     2581 gcagatggag atggagtatt tcgtcgagcc gggcaccgat gaacagtggc accagtactg
     2641 gatcgacacc cgcaccgact ggtacaccga ccttggcatc aaccgggaca atctgcggca
     2701 ttacgagcat tcgaaagaga agctctccca ctattcgaag cggaccgtgg acgtggagta
     2761 ccggttcggt ttctcctctg gccagcaatg gggtgagctg gaaggcatcg ccaaccgcac
     2821 ggatttcgac ctcaccacgc actccaacca ctccggagtg gacctgtcct attacgacca
     2881 ggccaccgac tcccgttacc ggccctacgt gatcgagccg gccgctggcg tcggccgccc
     2941 catgatggcc tttctgctgg aggcctatgc ggaagacgag gcacccaatg ccaagggcgg
     3001 ggtggatcgc cgggtggtac tccggctgaa tcggcgactt gctcccgtga aggccgcggt
     3061 gctgccgctg tcgcgaaacg ccgacctttc ccccaaggcc a
//
LOCUS       DASVXZ010000448         5875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1750019, whole genome shotgun sequence.
ACCESSION   DASVXZ010000448 DASVXZ010000000
VERSION     DASVXZ010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5875
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1750019"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..>5875
                     /locus_tag="VF788_09215"
     CDS             14..>5875
                     /locus_tag="VF788_09215"
                     /inference="COORDINATES: protein motif:HMM:NF003417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8934355.1"
                     /translation="MVEGEQLSYGELDERSNRLAHWLIARGVGPERFVGLALPRSVEM
                     VLALLAVTKAGAAYLPIDPNYPSARIGFICADAEPVVVLCAQQTCACLPADVSRLVID
                     DPGAAVEIASCSGDGVTDADRIEPLSPAHCAYAIYTSGSTGVPKAVVVAHQSVADLVG
                     WAAAEFGVSGLAHVVASTSLTFDVSVFEIICPLLVGGSIELVRDVLVLGEPGAQRVAS
                     LVSGVPSALSQGLAHGGGVVRAESVVLAGEALSARVARRIQAATSCRRIANIYGPTEA
                     TVYAAAWYSEDEVQGDQAPPIGRPIANTRVFVLDAWLRPVPVGVVGELYIAGAGLARG
                     YLNRPGLTAGRFVACPFGAPGQRMYRTGDLVRWNADGELEYLGRVDDQVKVRGFRIEL
                     GEIEAALATHPGIDQVVVTAREDQPGTKRLVAYLVAVGQEGPSAAELRTHVGRVLPDY
                     MVPALFVTLDELPLNANGKLDRKALPAPDQPLTPIAGYVAPRTDTEQILAGIWAQVLG
                     VDRVGVEDNFFELGGDSILSIQVVSRARAAGVLVTTRDVFFAQTVAALAAGAGSVSEL
                     ADDEVIVGPAPLTPIQHWFFATYGALTHFNQSFAMELAEDVDVDALAIAVDALVAHHP
                     ALRTRFSQAEDGWYQDIAPSSGAVLERCDLSGVAEANRRAVIEQVALAAASGLDITDG
                     PLVRVVLFDFGSGQRPWLFIAIHHLVVDGVSWRILLGDLELAYQDVRAARPVELEPVG
                     TAFTQWAHRWVDYVRSGGLDDDLDYWSALSQEVPVELPVGRDGDNTAISARVVVAGLT
                     REETDALLHRVPGVYRTQVNDVLLSALGRVLSEWTGRDRVAIALEGHGREDILAGVEL
                     SRTVGWFTSLFPVTLNIEPGGWGELLKSVKEQLRAIPHRGLSYGALRYLRPDSGLDGN
                     ISPQISVNYLGQWGTAGQSGGLYRDGVDSLAPDVALHSVRPYLLDVVGAVTDGRLQLS
                     WTYSENVHDEATIEWLAGQMCAALRQIVTHCADPDAGGCTPSDFPLAQLSQAQLDALV
                     GAGRDVEDVYRLTPLQAGIMFHSLLDPAAAAYVDQTQLWISGVSDPAALGMAWQRVVD
                     RTPILRSAIVWEGIDEPVQIVYRQVASPIIYHDWCALSEQEQQQELERVVTAELAGLD
                     LSVAPLSRLVISRVGDDEVALVWTRHHVILDGWSTAAVLAEVCEQYAAITQGRAPELV
                     ARRPFRDYLHWLAQQDQAQAQAHWRAVLAGLDSRTALPYDRPPRQAHQAESSESLDIA
                     LETSDTVRLQQVAQRHGLTVNTLVQGAWALLLSRYCGQSDVVFGTTVAGRPAELAGVE
                     AMVGMFINTVPTRAHIHHDQPLMSWLRELQTAQIKSRRFDYLSLAQLQTYSDLPAGSA
                     LFDSIVVFENYPFDPTAVTSAGLHIHHAQIRDTTTFPLALLAYLGEHLALSLAYDPHL
                     FDAVTIERLGRHLVVLLGGIAADPTQLITQLPLLTAAERDQLLVGWNDTAQQVPGVTL
                     PELFAVQVARTPDAVAVVVEGEQLSYGELDERSNRLAHWLIARGVGPEQIVALVLPRC
                     VDLVVAIFGVLKAGAAYLPVDPDYPTARMGFMLGDADPVVLLTHTHTRDSIPQGVSTP
                     QLVLDHPSTVESLAVFSGVDPIGTDGAISLDPQHPAYLIYTSGTTGLPKAVMVSHRAV
                     VNHMVWMQAAVPLGERDTVLHRTSFTFDASVWELFAPLISGARLLLAPPDACRDPGAL
                     AELVTRCGVTVLQVVPSLLRLLLEQGAVEEWGTLRRLFCGGEAFSGDLWAQCRSRLES
                     ATVYNLYGPTEACIDASFHVCQDTDTTTTVPIGRPIANTRMFVLDGALRPVPVGVAGE
                     LYITGAGLARGYLNRPGLTASRFVACPFGVSGQRMYRTGDLVRWLPDGQLEYLGRVDD
                     QVKVRGFRIELGEIEAALVTHPGIDQVVVTVREDQPGVKRLVAYLVVVGQGVPS"
BASE COUNT          845 a         1466 c         2160 g         1404 t
ORIGIN      
        1 tgcggtggcg gtggtggttg agggtgagca gttgtcgtat ggggagttgg atgagcggtc
       61 gaatcgcctg gcgcattggc tgattgcccg gggagtaggc ccggagcggt ttgtcgggtt
      121 ggcgttgccg cggtcggtgg agatggtgct ggcgttgctg gcggtgacca aggcgggggc
      181 ggcgtatttg ccgattgatc cgaactatcc ttcggcgcgt attgggttca tttgtgccga
      241 tgctgagccg gttgtggtgc tgtgtgcgca gcagacctgt gcgtgtctgc ctgcggatgt
      301 ttcccggttg gtgattgacg atccaggcgc tgctgttgag attgcgagtt gttctggtga
      361 tggtgtcacc gacgctgacc ggatagaacc actgtctcct gcccattgtg cgtatgcgat
      421 ttacacctcg ggatccaccg gggttcccaa ggcggtcgtg gttgcgcatc aaagtgtggc
      481 ggatcttgtt ggctgggcgg cggcggagtt tggtgtctcg gggttggcgc acgtggtggc
      541 gtcgacgtcg ttgacttttg atgtgtcggt gtttgagatt atttgcccgt tgttggtggg
      601 cggcagtatt gagctggtcc gtgatgtgct ggtattgggt gagcccgggg cgcagcgggt
      661 ggcgagtctg gtcagtgggg tgccttcggc gttgtctcag ggtttggctc atggtggtgg
      721 tgtggtccgg gctgagtcgg tggtgctggc gggagaggcg ctatcggctc gggtagcccg
      781 tcggattcag gcagcgacgt cgtgtcggcg gattgcgaat atttatgggc cgactgaggc
      841 gacggtgtat gccgctgcgt ggtattccga ggatgaggtc cagggagatc aggctccgcc
      901 gattggtcgg cctattgcta atacgcgggt gtttgtgttg gatgcgtggt tgcggccggt
      961 tccggtgggt gtggtggggg agttgtatat cgcgggcgcg ggcctggcgc gggggtattt
     1021 gaataggccg ggattgaccg cgggtcggtt tgtggcgtgc ccgttcgggg cgccggggca
     1081 gcggatgtat cgcacggggg acctggtccg ctggaatgcg gatggggagt tggagtatct
     1141 gggccgggtt gatgatcagg tgaaggttcg gggtttccgg atcgagttgg gcgagatcga
     1201 agccgcgctg gccactcatc ccggtattga tcaggtggta gtgaccgccc gggaggacca
     1261 gcctggcacg aagcgcctgg tggcttatct ggttgcggtt ggccaggagg ggccttctgc
     1321 ggcggagttg cggactcatg ttgggcgggt gttgccggat tacatggtgc ccgcgttgtt
     1381 tgtgacgctg gatgagttac cgctgaacgc gaacggaaag ctggaccgca aggcactacc
     1441 cgctccggat cagcccctca cgcccattgc tgggtatgtc gctccccgca ctgataccga
     1501 gcagatactg gccggtattt gggcccaagt acttggcgtc gaccgggtgg gggttgagga
     1561 taacttcttc gagttgggtg gcgactcaat cctgagcatc caggtagtgt cacgggctcg
     1621 ggcggcgggt gtgctggtga ccacgcggga tgtgttcttc gcccagacgg tggccgcgct
     1681 ggcggcgggt gcgggatccg tgtcggaatt ggccgacgat gaggtgatcg tgggtccggc
     1741 gccgttgacc ccgattcagc actggttctt cgccacctat ggtgcattaa cacacttcaa
     1801 ccagtccttt gcgatggagc tggctgaaga tgttgatgtg gatgctttag caatcgcggt
     1861 cgatgcgttg gtggcgcatc atccggcgtt gcggactcgc ttttctcagg ctgaggatgg
     1921 gtggtatcag gacatcgcgc cttccagtgg cgcggtgttg gagcgttgtg atctttcggg
     1981 tgttgctgaa gcaaatcggc gtgcggtgat cgagcaggtg gcgttggccg ctgcgtcagg
     2041 tttggacatc accgatggtc cgctggtgcg ggtggtgctg tttgatttcg ggtcgggtca
     2101 gcggccgtgg ttgtttatcg cgatccatca cttggtggtg gatggggtgt cgtggcggat
     2161 cctgctgggt gatctggagt tggcgtatca ggatgttcga gcggcgcggc cggttgaatt
     2221 ggaaccggtg ggtacggcat ttacccagtg ggcgcaccgg tgggtggact atgtccggtc
     2281 cggtggtctt gatgatgatc tggactactg gtctgcgctg tcgcaggagg tgcccgttga
     2341 gttgccggtg ggccgggacg gggacaacac agccatctcg gctcgggtcg tggtggcggg
     2401 actgacccgg gaggagactg atgcgttgct gcatcgggtg ccgggggtat accgcaccca
     2461 ggtcaacgat gtgctgctca gcgcgctggg tcgggtgctt tcggagtgga ccgggcggga
     2521 tcgggtagcg attgccctgg aggggcatgg ccgggaagac atcctggctg gggtggagct
     2581 gtctcgcacg gtgggctggt ttacctccct gttcccggtg accttaaata ttgagcctgg
     2641 gggttggggt gagctgctca agtcggtcaa ggagcagttg cgggctatcc cgcatcgtgg
     2701 gcttagctac ggggcgttgc gttatctgag gccggatagc gggctggatg ggaatatatc
     2761 tccgcaaatc agtgtgaatt acctcggtca gtgggggacg gcgggccagt ccggtgggct
     2821 gtatcgggac ggggtggatt cgttggcgcc cgatgtcgcc ctgcacagtg tgcgtcctta
     2881 cctgctggat gtggttggcg ctgtcaccga tggtcggctc caattaagct ggacgtattc
     2941 ggagaatgtg catgatgagg ccactattga gtggttggcc gggcagatgt gtgcggcgtt
     3001 gcgtcagatc gtgacgcatt gcgcggaccc ggatgcagga gggtgcacgc cgtctgattt
     3061 cccgttagcc cagttgtcac aggcccagct ggatgcgttg gtgggtgctg gtcgggatgt
     3121 cgaggacgtt taccggttga ccccgttgca ggccgggata atgttccaca gcctgctcga
     3181 tccggccgcc gcggcgtatg tggatcagac ccagttgtgg atttctgggg tcagtgatcc
     3241 ggcggcgcta ggtatggcgt ggcagcgggt ggttgatcgc acgcccattt tacgcagcgc
     3301 gatcgtttgg gaggggatcg atgagccggt gcagatcgtg tatcggcagg tggcctcgcc
     3361 gatcatctat cacgactggt gtgcgctttc ggagcaggaa caacaacagg agctggagcg
     3421 ggtcgtaacg gccgaactcg ccgggctgga tctgagtgtg gcgccattgt cgcggctggt
     3481 catttcccgg gtgggcgacg atgaggtcgc actggtgtgg acccgtcacc acgtgatcct
     3541 cgatgggtgg agtaccgctg cggtcttagc cgaggtctgt gagcagtacg cggcgatcac
     3601 ccagggccgt gcccccgaac tggtggcccg gcggccgttc cgcgattacc tgcactggct
     3661 agcccagcaa gaccaggccc aggcccaggc gcactggcgg gcagtactag ccgggctcga
     3721 ctcccggact gcgctgcctt atgaccgccc accccgccag gcgcatcagg ccgagtccag
     3781 cgaatcgctc gatattgcgc tggagacctc ggacaccgtg cggttgcagc aggtggccca
     3841 gcgccacggg ctgacggtca acaccctggt acagggcgcc tgggcgctgc tgttgtcgcg
     3901 ctactgcggc cagtccgacg tggtgttcgg gaccaccgtg gccgggcgcc cggcggagct
     3961 ggccggggtg gaagccatgg tgggcatgtt catcaacacc gtgcccaccc gcgcgcacat
     4021 tcaccatgac caaccgttga tgtcgtggct gcgcgaattg caaaccgcgc agatcaaatc
     4081 ccgccgattt gattacctgt ccctggccca gctccagacc tacagtgacc tacccgcggg
     4141 cagtgcgctg ttcgacagca tcgtcgtgtt cgagaactac cccttcgacc ccactgcggt
     4201 caccagcgcc gggctgcaca ttcaccacgc ccaaatccgg gacaccacta ccttccccct
     4261 cgctttgctc gcctacctcg gcgaacacct cgcgttaagt ctggcctatg acccacacct
     4321 atttgacgct gtcacgattg agcggttggg gcgtcacctt gtggttttgt tgggtgggat
     4381 cgcggccgat cccacccagc tcatcaccca actaccgttg ttgactgctg cggagcggga
     4441 tcagctgttg gtggggtgga atgacactgc tcagcaggtg ccgggggtca cgttgccgga
     4501 gttgttcgcg gtgcaggtgg cgcggactcc ggatgcggtg gcggtggtgg ttgagggtga
     4561 gcagttgtcg tatggggagt tggatgagcg gtcgaatcgc ctggcgcatt ggctgattgc
     4621 ccggggagta ggcccggagc agatcgttgc tttagtcttg cctcgctgtg tggatcttgt
     4681 tgttgctatc tttggtgtgc ttaaagccgg tgcggcgtat ttgccggtgg accctgacta
     4741 cccgactgcg cggatggggt tcatgctcgg tgacgcggac ccggtagtgc tgcttaccca
     4801 tacccatact cgggacagca ttccgcaggg tgtttccacg ccacagcttg ttctcgacca
     4861 tccctccact gttgaatcat tagctgtctt ctccggcgtc gatcccatcg gtactgatgg
     4921 tgctatctct ctagacccgc aacatcccgc atacttgatt tacacctcgg gtactacggg
     4981 cctgcctaaa gctgtgatgg tcagccatcg ggcggtggtc aatcatatgg tgtggatgca
     5041 ggctgcggtg ccgctgggtg agcgagacac tgtgttgcat aggacgtcgt tcacgtttga
     5101 cgcttcggta tgggagttgt ttgcgccgtt gatttcgggg gcgcgattgt tgttggcgcc
     5161 gcctgatgct tgtcgggatc ctggtgcgct tgccgagctg gtcacccgct gtggcgtgac
     5221 cgtgctgcag gtggtgccct cgttgttgcg gctgttgctt gagcaagggg cggtcgagga
     5281 atggggcacc ttgcggaggc ttttctgtgg tggcgaggcg ttttctggag atctgtgggc
     5341 gcaatgccga agccgtctgg aatcggccac tgtgtacaat ctttacgggc ccaccgaggc
     5401 atgtattgat gcaagtttcc acgtttgtca ggacaccgac accacgacca cagtgccgat
     5461 tggccggcct atcgctaata cgcggatgtt tgtgttggac ggtgcgcttc ggccggttcc
     5521 ggtgggtgtg gcgggtgagt tatatatcac gggtgcgggt ctggcgcggg gatacttaaa
     5581 caggccgggg ttgactgcgt cccggtttgt ggcgtgtccg tttggggtgt cggggcagcg
     5641 gatgtatcgc actggggatt tggtgcgttg gttgcctgat gggcagctgg agtatttggg
     5701 tcgggttgat gatcaggtta aggttcgggg ttttcggatt gagttggggg agatcgaggc
     5761 tgcgttggtc actcatcctg gtattgatca ggttgtggtg actgttcggg aggatcagcc
     5821 tggtgttaaa cggttggtgg cttatctggt tgtggttggt cagggtgtgc cttct
//
LOCUS       DASVXZ010000449         5574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1368023, whole genome shotgun sequence.
ACCESSION   DASVXZ010000449 DASVXZ010000000
VERSION     DASVXZ010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5574
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1368023"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VF788_09220"
     CDS             <1..365
                     /locus_tag="VF788_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013231035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX8934356.1"
                     /translation="TKRYGSSPGTPREVAEPLVLLLAPVAPHIAEELWSRLGHGESLA
                     HGPLPQAQQRYLVEDTIEYPIQINGKVRTRVTVPSSASPDEVRTAALAHARIANLVTD
                     EEPRKVIVVPGRLINVVP"
     gene            complement(394..597)
                     /locus_tag="VF788_09225"
     CDS             complement(394..597)
                     /locus_tag="VF788_09225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934357.1"
                     /translation="MPTPDEQLPATGGADQGSLHDPEAAEAYAESVSIDPSPDEIDEY
                     LKIAGGEPLHEQPETIPTNNLGA"
     gene            805..1140
                     /locus_tag="VF788_09230"
     CDS             805..1140
                     /locus_tag="VF788_09230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934358.1"
                     /translation="MGALAHKVVLPTRVKDKVHDAKETAQSKVGIVRQHLQTGTEALQ
                     DKADGVMQEARGVTNQALAKLVPPGVGRISRRRITNVTGTVRRRPVPVAAAVLSVLMV
                     LGLLIRRNR"
     gene            1232..1372
                     /locus_tag="VF788_09235"
     CDS             1232..1372
                     /locus_tag="VF788_09235"
                     /inference="COORDINATES: protein motif:HMM:NF017353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8934359.1"
                     /translation="MDIGSKISNMTEELTGKFKSMAGKATDDEQLEAEGETDQVKDVF
                     QN"
     gene            complement(1451..2551)
                     /locus_tag="VF788_09240"
     CDS             complement(1451..2551)
                     /locus_tag="VF788_09240"
                     /EC_number="5.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004512 - inositol-3-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006021 - inositol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEX8934360.1"
                     /translation="MTEGRDAGPGIRVAIVGVGNCAASLVQGVQYYRDADPTTRVPGL
                     MHVRFGDYHVRDVQFVAAFDVDAKKVGRDLSEAIVASENNTVSICDVPPLGVTVARGH
                     TMDGLGEYYRDIITESDEKPVDVVSVLRESGADVLVSYLPVGSEDADRFYAQCALDAG
                     VAFVNALPVFIASDPVWGDKFTSAGVPIIGDDIKSQVGATITHRVLAKLFEDRGVELV
                     RTYQLNFGGNMDFMNMLERKRLESKKISKTQSVTSQVPHEMEKAAVHIGPSDHVPWLD
                     DRKWAYVRLEGRAFGDVPLSMEYKLEVWDSPNSAGVIIDAIRAAKIAKDRGIGGPIAS
                     ASAYFMKSPPEQYSDSDAYEAVEAFIRGELDR"
     gene            complement(2544..3131)
                     /locus_tag="VF788_09245"
     CDS             complement(2544..3131)
                     /locus_tag="VF788_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005460533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX8934361.1"
                     /translation="MLELAVLGVLHDAPMHGYELRKRLTGLLGAFRACSFGSLYPTLR
                     RLQRSGFIVEDNEPAHDLRAGRSTGWSCRGRRVYRLTADGKERFATLLADAGPQTWED
                     NGFGVHLAFFSRTPAEVRMRILEGRRRRVEERREGLRATLARTGDQIDRYTLELHRMG
                     LETSEREVRWLNELIAHERANPAGSHHDTERADHD"
     gene            3264..3668
                     /locus_tag="VF788_09250"
     CDS             3264..3668
                     /locus_tag="VF788_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020632554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5318 domain-containing protein"
                     /protein_id="HEX8934362.1"
                     /translation="MRTQRQVVDYALQRRALLAEVYAGRVGLTEVCDATPYLLRAAKF
                     HGEPSSVTCPMCRKESLTLVSWVYGDELKHAAGSARTADELHRMATLYEEFSVFVVEV
                     CRTCSWNHLVQSYVLGTSGVGSRRSRRRTAAE"
     gene            3756..>5574
                     /locus_tag="VF788_09255"
     CDS             3756..>5574
                     /locus_tag="VF788_09255"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEX8934363.1"
                     /translation="MSDQRHHGSRRPPPAEPAVGHLPAQPTVRRPPAERFAQARSEQR
                     QPGGYGSYNRASVLPLDREPELLTHPASSIGPGGGDRSLGKRSRTGDGYGWFPDKAAG
                     GGDGSGWPPRWRRARQIALIGALLCVLLPVLAFFAGWLFLDVPSPAALAAQRKQVTTI
                     MASDGTTEVGRYVPEEGNRIPVSLAQVPAHVQNAVLAAEDRSFRSNPGFDITGIARAT
                     WKQFTGGGGGGSTITQQYIKVATGHDEYSILRKFREVIVAAKITKQESKDRILEDYLN
                     TIYFGRGAYGIQAASQAYFKKNVQNLTVSEAAVLAAAIRSPSLLDPAKNLPQAQARWN
                     FVLDGMVEQGWLSPGDRSVGLYPDAVPPGQTSGAATDDRAHIVDRVMDELDKQGINRA
                     QLAINGGRITTTIDPRAQQLARDAVLTELRGQPKNLHSSLVAIDPRSGAVIAYYGGSD
                     GDGFDLAGGPVWNPGSAFKPFTMLAALEHDIGMNSMYDGNSPLVIDGRSYNNSESRNF
                     PQLTLHDAMTQSVNTAFVRLAQDVGPQAIRDAAIQAGIPEQINGKRAMSEPDSAAPGL
                     GITLGQYPVHTIDMAGAYATFAADGRRHEPYFVRQYANSR"
BASE COUNT         1021 a         1818 c         1797 g          938 t
ORIGIN      
        1 tcaccaagcg ctacggctcc agccccggga cgccgcggga agtggccgag ccgctggtgt
       61 tgctgttggc gccggtagcc ccgcacatcg ccgaagaact gtggtcgcga ctggggcacg
      121 gcgagtcgtt ggcgcacggt ccgctgcctc aggcgcagca gcgctacctc gtcgaggaca
      181 ccatcgaata cccgatccag atcaacggca aggtccgcac ccgggtgacg gtgcccagct
      241 cggccagtcc cgacgaggtg cgcaccgcgg ccctggccca tgcccgcatc gcgaacctcg
      301 tcacagacga ggaaccccgc aaggtcatcg tggttcccgg ccgtctgatc aacgtggtcc
      361 cctaatccgg cgtgtcgcgc tgcggtgccg gggttaagca cccaagttgt tggtcgggat
      421 ggtctccggc tgctcgtgca agggttctcc cccagcgatc ttgaggtact catcgatctc
      481 gtccggggac gggtcgatgc tcaccgactc ggcgtaggcc tcggccgcct ccggatcgtg
      541 caggctgccc tggtcggccc cgccggtggc cggcagctgt tcatcaggcg tcggcatgtt
      601 cgcctccctc gtccatggat gaggcctgag gctactccgg ctcggtcaca agaaaatccg
      661 gctcatctga ccgaaccgtg tttacagcgg gtgagacggg gtaactgact gctaccgcgg
      721 cctcgtcccc ggagactagg tcgtcaagga ccgaaccggc gtcccactgg acgtcgcccg
      781 tagctataga agggagtggg agctgtggga gcgctggcac acaaggtggt cttgcccaca
      841 cgagtcaagg acaaggtgca cgatgccaag gaaaccgcac aatccaaagt agggattgtc
      901 cggcagcacc tgcagacggg caccgaggcg ttgcaggaca aggccgacgg tgtgatgcag
      961 gaagcgaggg gtgttaccaa ccaggcactc gcgaaactcg ttccgccggg cgtggggcgt
     1021 atcagtcgtc ggcgaatcac aaacgtaacg ggaacggtcc ggcgaagacc ggtgccagtc
     1081 gcagcggccg tactgagtgt gctcatggtg ctaggactgc tcatccgcag aaacaggtga
     1141 ccgtcgctgg agtacagagc gctttcgccg tcggtgaagt cacgaccaaa gccgggcaac
     1201 tacatcaact acattgataa aggagcacct ggtggatatc ggaagcaaga tttcgaacat
     1261 gaccgaggag ctgacgggca agttcaagtc gatggcgggc aaagctaccg acgacgagca
     1321 gctcgaggcc gagggcgaga ccgaccaggt caaggacgtc tttcagaact aaacccaccc
     1381 caaatcgccc ggccgggtgg accaccccca gccacccggc cgggcaccca gccgccgtcc
     1441 cgccggcgcg ctagcggtct agctcgccgc ggatgaaagc ttcgacggct tcgtaggcgt
     1501 cgctgtcgga gtactgctcg gggggtgact tcatgaagta ggcggacgcc gaggcgatcg
     1561 ggccgccgat cccccggtcc ttggcgatct tcgcggcgcg gatcgcgtcg atgatgacgc
     1621 ccgcggagtt gggcgaatcc cagacctcga gcttgtactc catgctcagt ggcacgtccc
     1681 cgaacgcccg gccctccagc cggacatagg cccatttgcg gtcatccagc cacggcacgt
     1741 gatccgacgg tccgatgtgc accgccgcct tctccatctc atgaggcacc tgcgaggtca
     1801 ccgactgggt cttggaaatc ttcttcgatt ccagccgctt gcgctccagc atgttcatga
     1861 aatccatgtt cccgccgaaa ttgagctggt aggtacgaac cagttccacc ccgcgatcct
     1921 cgaacagctt ggccagcact cggtgcgtga tcgtcgcccc gacttgggat ttgatgtcat
     1981 cgccgatgat cggcaccccg gccgaggtga acttgtcccc ccacaccgga tcggaggcga
     2041 tgaacactgg aagcgcattg acgaatgcca ctccagcatc cagcgcgcac tgggcataga
     2101 agcggtcggc atcttccgag ccgaccggta gatacgacac cagtacatcg gcgcccgact
     2161 cgcgcagcac gctcaccaca tcaaccggct tctcgtcgga ctcggtgatg atgtcgcggt
     2221 agtactcgcc caagccgtcc atcgtgtgtc cacgcgcgac cgtgacgccc agtggcggca
     2281 catcacagat cgagacggtg ttgttctcgc tggccacgat ggcctcagac aggtcacgtc
     2341 cgaccttttt ggcatcgacg tcgaacgctg cgacgaactg cacgtcgcgc acgtggtagt
     2401 cgccgaagcg gacgtgcatc aggccgggta ctcgggttgt ggggtcagcg tcgcggtagt
     2461 actgcacgcc ctgtaccagc gaggcagcgc agttgccgac gcccacaatg gcgacccgga
     2521 tcccggggcc ggcgtcgcgg ccttcagtca tggtccgccc tttcggtgtc atgatgtgat
     2581 ccagctggat tcgctcgctc atgggcgatc agttcgttaa gccagcgcac ttcacgctca
     2641 ctggtttcca gacccatccg gtgcaactcc agggtgtacc ggtcgatctg gtctccggta
     2701 cgcgcgagag tggcgcgaag gccctcccgc cgttcctcga cccggcgccg cctgccctcc
     2761 aggatccgca tccggacttc agccggtgtg cgggagaaga acgccaggtg cacgccaaaa
     2821 ccgttgtcct cccaggtctg tggtccagca tcggcgagca gggtggcaaa gcgctccttg
     2881 ccgtctgcgg tgagtcggta cacccgccgg ccgcggcacg accatccggt gctccggccg
     2941 gctcggagat cgtgcgcagg ctcattgtct tcgacgatga aaccggagcg ctgcaaccgg
     3001 cgtagcgtgg gatacaacga tccaaaggag caggcgcgga atgcccccag cagtccagtg
     3061 aggcgtttac gcagctcgta gccgtgcatc ggggcgtcat ggagcacccc aagcaccgct
     3121 agctccagca tgcggcacct ccgaggcggc gctccgatgt atagccgcac tatatcgcag
     3181 cgatacatcc gtagcacttt cgcagccggg tgccgcccga acgcccgagc gttgatcacc
     3241 caccggttgc gtagtctgtt ggcatgcgga cccaacgaca ggtcgtggac tacgcgttgc
     3301 agcggcgtgc gctgctcgcg gaggtctatg ccggccgggt cggccttacc gaggtctgcg
     3361 acgccacccc gtacctcttg cgagcggcga agttccacgg tgagcccagc tcggtcacct
     3421 gccccatgtg ccgcaaggaa tctttgacgc tggtctcgtg ggtgtacggt gacgagctca
     3481 agcatgcggc agggtccgcc cggaccgcag acgagctcca tcggatggcg actttgtacg
     3541 aggagttcag cgtctttgtc gtcgaggtgt gccggacgtg cagctggaac cacttagtgc
     3601 agtcgtacgt cctgggaacc agcggtgtag gcagtaggcg gtcgcgccgg aggaccgcgg
     3661 cggagtaacc ggacgtccgg ctggggcgtg tccctggtta agtgtgtccc tgctcgaacc
     3721 cctcgcgagc cgagtacggt ctgggaggac aacgcgtgag cgaccagcga catcacggta
     3781 gtcggcgccc accgccggct gaaccggcag tgggacactt gccggcccag ccgacagtca
     3841 ggcggccgcc ggctgagcgc ttcgcccaag ctcgatcgga gcagcgtcag ccaggtgggt
     3901 acggctcgta caaccgggcc tctgttcttc cgcttgacag ggaacccgag ctactcaccc
     3961 acccggcgtc gtcgattggt ccgggtggcg gagacagatc gttagggaag cgcagccgga
     4021 cgggcgatgg ctacggctgg ttccccgaca aggccgccgg tggtggagac ggctccgggt
     4081 ggccccctcg ctggcgccgg gcacgccaaa tcgcgctgat aggtgcgctg ctgtgcgtcc
     4141 tgctgccggt gctggcgttc tttgcgggtt ggctgttcct tgacgtgccg tctccggcgg
     4201 cactggcagc gcagcgcaag caggtcacca cgatcatggc cagtgacggg accaccgagg
     4261 tcggtcgcta cgtaccagag gagggaaacc ggatcccggt cagtctggcg caggtaccgg
     4321 cccacgtgca gaacgcggta ctggcagctg aggaccgcag cttccgatca aacccaggat
     4381 tcgacatcac cggcatcgcc cgagcgacct ggaagcagtt caccggtggc ggcggaggtg
     4441 gctccacgat cacccagcaa tacatcaagg tggccaccgg ccacgacgag tacagcatct
     4501 tgcggaagtt ccgcgaggtg atcgtcgcgg ccaagataac caagcaggag tcgaaggacc
     4561 ggatcctcga ggactacctc aacaccatct atttcggccg cggcgcctac gggatccagg
     4621 cagctagcca ggcgtacttc aaaaagaacg tgcagaacct gaccgtctcg gaggcggcag
     4681 tactggccgc cgcgatccgg tcgccgtccc tgttggatcc ggccaagaac ctgccgcaag
     4741 cgcaagcccg ctggaacttc gtgctggatg gcatggtcga gcagggctgg ctttccccag
     4801 gtgatcgcag cgtcgggctc tacccggacg ccgttccacc gggtcagacc tccggcgcgg
     4861 cgacagatga tcgtgcgcac atcgtcgacc gggtgatgga cgagctggac aagcagggca
     4921 tcaaccgggc ccagctggcg atcaacggtg gccggatcac taccactatc gatccccggg
     4981 cgcagcagct cgcccgcgat gccgtgctca ccgagctacg tgggcagccg aagaacctgc
     5041 actcgtcgct ggtcgcgatc gatccgcgca gcggtgcggt gatcgcttac tacggtggat
     5101 cggacgggga tggcttcgat ctggccggtg gcccggtgtg gaatccagga tcggccttca
     5161 aaccgttcac catgctcgcc gcgctggagc acgacatcgg catgaactcg atgtacgacg
     5221 gcaactcccc actggtcatc gacggtcgct cctacaacaa ctcagagagc cgcaacttcc
     5281 cccagctgac cttgcacgac gcgatgaccc agtcggtgaa caccgcgttc gtgcggctgg
     5341 cccaagatgt cggaccgcaa gcgatccgcg acgccgcgat ccaggccggg atcccggagc
     5401 agatcaacgg caagcgcgcc atgtcggagc cggacagtgc ggcgcctgga ttgggcatca
     5461 cgctgggcca gtatccggtg cacacaattg acatggccgg tgcctacgcg accttcgccg
     5521 ccgacgggcg tcggcatgag ccctatttcg tccgccagta cgccaactcc cgtg
//
LOCUS       DASVXZ010000450         2585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_407070, whole genome shotgun sequence.
ACCESSION   DASVXZ010000450 DASVXZ010000000
VERSION     DASVXZ010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407070"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1256)
                     /locus_tag="VF788_09260"
     CDS             complement(<1..1256)
                     /locus_tag="VF788_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEX8934364.1"
                     /translation="MSLSPTTPHVEDPDTDSDVTVEQDYLTLLYRHLDERRRYTARRL
                     AEVLRNPTTGTPQALTERDAAAAMYSQQLATLDGVEQGLCFGRLDLQSDMCDRDMCDG
                     DGRRYIGRLGLLDEQHDYQPLLIDWRAPAARPFYTATAARPEGVRRRRHIRTRSRKVL
                     GIEDEVLDLDGVEQDPTGTNLTSEAALMAALTETRTGRMSDIVATIQTEQDRIIRAKP
                     QGLLVVQGGPGTGKTAVALHRAAYLLYTHRRQLAKRGVLVVGPNATFLRYIEHVLPSL
                     GETSVLLCTVAQLHPGLHARGVEPEETAAVKGRIEMAKVVAAAVRDRQCLPTEPIELT
                     IEGQPVRLDRAVCLPARTRARRSRRTHNEARNVFRQEVVMALANQVANGFGGLGREVL
                     NREDLADIRTELRGSPELNAALEELWP"
BASE COUNT          480 a          895 c          785 g          425 t
ORIGIN      
        1 ggccataact cttccagcgc ggcattcagc tcggggctgc ctcgtagctc ggtgcggatg
       61 tccgccagat cttcccggtt gagcacctct cgacccaggc cgccgaaacc gttcgcgacc
      121 tggttggcca gcgccatcac cacctcctgc cggaacacgt tcctggcctc gttgtgtgtc
      181 cggcgggagc gccgcgcccg ggttcgggcc ggcaggcaca ccgcccggtc cagccggacg
      241 ggctgcccct cgatggtgag ctcgatcggc tccgtaggca ggcactggcg gtcccggacc
      301 gccgcagcca ccactttcgc catctcgatc cgccccttga ccgcagcggt ctcctccggc
      361 tcgacgccgc gggcgtgcag cccggggtgc agctgcgcaa ccgtgcacag cagcacgctc
      421 gtctcaccca gcgagggcag cacatgctcg atatagcgca gaaatgtcgc gttgggcccg
      481 accaccagca caccgcgctt ggccagctgg cggcggtgcg tgtagagcag ataggccgcc
      541 cggtgcagtg cgacggcggt cttgccggtg cccggtccac cctgcacgac cagcagtccc
      601 tgcggcttgg cgcggatgat ccggtcttgt tcagtttgaa tggtcgccac gatgtcggac
      661 atccggccgg tccgggtctc ggtcagcgcg gccatcaggg ccgcttcgct ggtcaggttg
      721 gtgccagtcg ggtcctgctc aaccccatcg agatcgagca cctcgtcctc gatgccgaga
      781 accttgcggc tacgggtccg gatgtggcgc cggcggcgaa cgccctccgg gcgcgcagcg
      841 gtcgcggtgt agaacggtcg cgctgcgggt gcccgccagt cgatgagcag tggctggtag
      901 tcgtgttgtt cgtcgagtag ccccagccgg ccgatgtagc gccgcccatc accgtcgcac
      961 atgtcccgat cgcacatgtc gctctgcaga tccagccgcc cgaaacacag gccctgctcg
     1021 acgccgtcca gggtggcgag ctgctgggaa tacatcgccg cggcggcgtc ccgctcggtg
     1081 agtgcctggg gcgtgccggt ggtcggattt cgcaagacct cggcgagccg ccgggcggtg
     1141 taccggcggc gttcatcgag atgccggtac agcagggtga gatagtcctg ctccaccgtc
     1201 acgtcagaat ccgtgtccgg atcctcgacg tgcggggttg tggggctgag cgacacgcga
     1261 tgacttcacc ttctgagagg gggagggcgt acgtcactac aaccgtggaa ggttgccgcc
     1321 attccaaggt agcaagaccc gcacccatcg aggtgattgt ccgcctgcca cgcggagcgc
     1381 tcagcgcgcc gaatttgacg ccagagctgt gctgccgaca agatacctag ttacggaggt
     1441 ccggatctgg gacccagtcg tcggcaccgc tttgcatacc ctcactggac acaccgacgg
     1501 ggtgcaggcg ttggtggccg ccccggatgg gtcgtggctg gcctcccgat aggcagccac
     1561 cacatccatc cgttccctcg cgttcttcac tagagacccc tgcgtggtgc gctgacatgg
     1621 attcgcaccc gccaccatcg ccgcgcagga ccactcaccc cgggcaagac acgcgaggac
     1681 tggaaacttt caactggcca acaacgggga ccggaacctg gtcaccagtg gagacttttt
     1741 catggccacg gacagctatc agaacacttg catgaccatc gctacggcca tcgctggcta
     1801 aaagtaaggc tgcctcgact gagcacccct cacccgtgtc ctgcacgcgt caccacgcaa
     1861 accgccggca agtcatgcat gggatcgaag gcgctttcat cggcattgca tgatcacatg
     1921 cgcccggagc cagtgcgaga atcaggtgag gaaacccagg ctgctcaccg cggccgtgca
     1981 acgacccggg atcttctggg tagcaaagat gcctggctat aggaccccag acgtatgccg
     2041 gacaagacac cttctagaag tacctattga ggccggagat cacctgcgaa cggctcgctg
     2101 ctggatctag actactcgca ccgcaaccct caacgccccg atccggcacc atcgagtcct
     2161 cggtgactga tcaacgagta cacgcgagag cctgatccag ccaacgaaac cactggtcaa
     2221 caaccatgcg ctagtcttgg cacggtagac gatccgacgg atcatgccgc tgcttcggat
     2281 gctcagccac actcacggat tgtcggcgaa gtcaacacac cgtgaccccg gcagcacacc
     2341 agacagacac cgcatcgaac acaccaccca gcctcaaccc gcggactatc caaacacgac
     2401 cgacaccccg gacacgcccc cgggcaacac gggcccccat gtctaggtgc ccgaatcaat
     2461 gccacatacg ggcccgcgcg ccgacacata tcatggaccg cctccggggg cacctgccga
     2521 ccacatccag gactcgagca ccggggccaa aacttctgac ggctagaacg aaccgctggg
     2581 agatt
//
LOCUS       DASVXZ010000451         5821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1009777, whole genome shotgun sequence.
ACCESSION   DASVXZ010000451 DASVXZ010000000
VERSION     DASVXZ010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5821
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1009777"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VF788_09265"
     CDS             complement(<1..276)
                     /locus_tag="VF788_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934365.1"
                     /translation="MFTFVSQRRAYEIGVGGPHDASHTTPETAVSDGSADRDAGIGGL
                     GWRGVYRVAGLFRRTAGNRSLHRHAIHVTVGGGPVDRSVTHSHNAYGG"
     gene            939..1466
                     /locus_tag="VF788_09270"
     CDS             939..1466
                     /locus_tag="VF788_09270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934366.1"
                     /translation="MRPRLFSAVRSDDMRLPSEVERLLLGVVDDGFVVYCCGPKAAPS
                     ALVACYQWRKYVDLVTIRRVDRITTARVVAPQDGRVDVFAPEAVVWAYEGPPQCALRA
                     LFDLVHPDHPAAPVNAYPAPPSLRISRAEQRPTTIRLPAPHQAGMRAFRLAVAMAAGG
                     STSTMDESLFEECVR"
     gene            1471..2325
                     /locus_tag="VF788_09275"
     CDS             1471..2325
                     /locus_tag="VF788_09275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8934367.1"
                     /translation="MPLTPADIRNVTFSKPLLGKRGYNEDEVDTFLDLIGAELARLIE
                     QNNDLRRQVEQRDRKLRAAGDPGRDLRPVQQVSTRWTHDTQATKVLGLAQQIADRLTA
                     DAKIEATGMLRDARTRSELLLADARMKSDGLVNEARTRAEALLNSAHTQVEVLDRQSQ
                     EKVAALERDAAQKHGKIIGSISQEKSVLEKKVDELRTVEREYRKRLKAYLESQLRELD
                     LRACVAPADTARNQQDGFSVAAEHRTDPEIGRTGADVARLPNRSGPISTETIGEAGTH
                     HLQWEPAV"
     gene            2769..3590
                     /locus_tag="VF788_09280"
     CDS             2769..3590
                     /locus_tag="VF788_09280"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8934368.1"
                     /translation="MASDMIGATQRKDLQIDTTVVHSARFWNYLLGGGDNYAVDREAA
                     ERILLLIPSLRDTVRAERGFLVRAVRHLAGDAKIRQFLDIGTGLPTASNTHEVAQAVA
                     PDSRIVYVDNDPLIMAHARALLTSTLDGATDYVHADLREPDIILEEAARTLDFTRPVA
                     LMLLGILNFIPDTDDAHAIVHRLLAPLAPGSYLVISHPTTEVDGEAMKDAMRFWNQSG
                     AAPIVSRTCQQLIRFFDNLELLEPGVVSCSLWRPDPLEVGSPVEVFHFSGVGRKL"
     gene            3757..4656
                     /locus_tag="VF788_09285"
     CDS             3757..4656
                     /locus_tag="VF788_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934369.1"
                     /translation="MAVPRSSHDPTGGQVPPRSQGPTALRIALGTQLRRLREARGVSA
                     EAAGYAIRASHAKISRMELGRVGFKERDVSDLLTLYGITDEHERRTFLALARGANVPG
                     WWHQYSNILPSWFEMYLGLEQASSVIRTYQPQFLPDLLQTREVAHAVIQLGHPDATPG
                     DIERRLALRMARQEILVQPGALNLWVVFDEAALWRLDQRSAMRAQIQHLIKMGELPNV
                     RIQVMPLFFGVQVAVGGPFVIMRFSEPDLPDIVYLEQLTSALYLDKSQDVQHYLMVMD
                     RLCVAAKSPAETIKFLSDALKEV"
     gene            4757..5560
                     /locus_tag="VF788_09290"
     CDS             4757..5560
                     /locus_tag="VF788_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEX8934370.1"
                     /translation="MALTLGDAPLSSRPRATVNYRINGPGHRLLFEPFPRRVRAVLGG
                     ETTLDTSSGMLLHESNLLPQLYLPSGDIREDLLISTDHRTYCPFKGDATYWSVMVNGR
                     TADNAVWSYLDPLSEAGWLRDYVALYWDSMDAWFDEDEEVAGHLRDPYHRVDVRSTSR
                     HVRVVAGDEVIAQSRRAVLLSETGLPNRFYLPADDVRTELLELSGTHTVCPYKGTASY
                     HSLRTSSELIADVAWYYPEPLEGVRAVRGYLCFDAEGIETWVDGVRLVR"
BASE COUNT         1151 a         1769 c         1826 g         1075 t
ORIGIN      
        1 gccaccatag gcattgtgac tgtgggtgac ggatcggtcg acgggaccgc cgccgacggt
       61 gacgtggatg gcgtgacggt ggagggagcg attgccggcg gtgcggcgga ataggccggc
      121 cacgcggtac accccgcgcc aaccgaggcc accgatacca gcgtcccgat cagcagaacc
      181 atcactgact gcggtttcgg gagtggtgtg gctggcgtcg tgcgggccgc ccacaccgat
      241 ctcataggcg cgacgttgcg acacgaatgt gaacacgaaa agtccagcag tcgaccaaca
      301 gatggcgaca agccctatga gggacggcat gttcgagaac gtcgtttctg caacgctgtt
      361 cccctgtgat cccaggcggg cggtggctga ctccgttgcg atagggcggt acccgcccaa
      421 attccgtaca gtccagccgt caaaataggc tcaccaaagc gcccgtcgaa tattcatgtc
      481 aacacacgat atggcggccg gagaacagga ctgtgtcttg ttcggaactg gactcggtcg
      541 cggataatgt agaaaagatt cagtaggcaa ctcgaccgca agacggtgta tgagacggtt
      601 cgtgagaccg ttcggcaggt agccaggatg agcgccgaca agcctgacgt ccttgcatcc
      661 gtccgcgacg gcacagtgaa cctgacgacc gtacttgcat tggtacacga cgcgaacgaa
      721 gaaacacacg ttcgtgaatc tgcccttgcc ctggcacgtg agcttctgga acggtggctc
      781 taagcgatat accgatgaat tccgcacccg cagcaaggga gttacatcgt ggtattccgc
      841 atcctgaggc aaccaaggcc actcatggta aggcgtagca tggttggatt gcgggaacag
      901 ctcgccagta tgcgggcagg tcagacggca gccggtcgat gaggccgcgt ttgttctccg
      961 ctgtgcgctc cgacgacatg agactgccct cggaggttga gcggctgttg ctcggcgtag
     1021 tggacgatgg gttcgtcgtg tattgctgcg gacccaaagc cgcgcccagc gcactggtgg
     1081 cctgctacca gtggaggaaa tacgttgatc tcgtcaccat ccggcgcgtc gatcgaatca
     1141 ctaccgccag ggtggttgcg ccccaagacg gacgggtcga tgtgttcgcc cccgaggctg
     1201 tggtgtgggc ttatgagggt ccgccgcagt gcgcactgcg ggcactattc gacttggtgc
     1261 atcccgatca tcccgctgct cccgtgaacg cctatccagc cccaccatcc ctgcgcatct
     1321 cccgcgccga gcaacgtccg acgaccatcc ggcttccggc gccgcaccag gccgggatgc
     1381 gagccttccg ccttgccgta gcgatggcgg ccggaggcag cacatcaacc atggacgaat
     1441 cgctatttga ggagtgcgtg aggtgatccg atgccgttga ctcccgccga catccgcaac
     1501 gtcactttca gtaaaccgct gctcggaaag cgcggctaca atgaggacga ggtggacacc
     1561 tttctcgatc tcattggtgc cgagctcgcc cggttgatcg agcagaacaa tgatctcaga
     1621 aggcaagttg aacagcgcga tcgaaagctc cgcgctgcgg gggaccccgg gcgcgacctc
     1681 cgcccggtgc agcaggtatc gacaaggtgg acgcacgaca cccaagccac caaggtgctg
     1741 ggattggccc agcagatcgc cgatcgcttg accgctgacg ccaagatcga ggcgaccggg
     1801 atgttgcggg atgcccggac cagatcggag ctcctgcttg ccgacgcgag gatgaagtca
     1861 gatggcctgg tcaatgaggc caggacccgc gccgaagcct tactcaacag tgctcatacc
     1921 caggtcgagg tcttggaccg gcagtcccag gagaaggtcg cggcactcga gcgcgacgcg
     1981 gcgcagaagc acggcaagat catcggctcg atcagccagg agaagagtgt cctggagaag
     2041 aaggtcgacg aactgcgcac ggttgaacgt gagtaccgca agcggttgaa ggcctacttg
     2101 gaatcccagc ttcgcgagct ggatctgcgc gcatgtgtcg cgccagcaga caccgcgcgc
     2161 aatcagcagg atgggttcag cgtggccgcc gaacaccgta ctgacccaga aataggcagg
     2221 acgggggctg atgtggcgag acttccaaac cggagcgggc cgatcagcac ggagaccatc
     2281 ggcgaagcag gtacgcacca cctacaatgg gaacctgccg tttaagcgat ggcttccggg
     2341 tagcgctcac ctcgggccgt tctggccaac cacacggcgc cgtgcaccag taaatcctgg
     2401 ccgtgaacca cctctccggc acgccaagat tccgccgtcc gccctcgtct gtttctgtag
     2461 cacccttaag actgatcatc ctccgttcgt ggaggttggc cggccgaacg ggtgatgtga
     2521 tgttgctaca tcgggacggt agagtgatca actgtgactg ggggggatcg catcacacga
     2581 cggtggcagt cgggggcggc ggtgctgagg ccatcacgtc cgtggaagag agccgcagaa
     2641 taaattctac acaggtttgc acgaatatta aaagcaacgg tccagatgtt tcagcatgtt
     2701 ccgatcgcat cacggatacg gggcgagaca ctatgagact agatgcagtg cgaaagagaa
     2761 gtacgcttgt ggcgagcgac atgatcgggg caacccagag aaaggatctg cagatcgaca
     2821 ctaccgtggt acattccgcc cggttctgga actatctgct cggtggtgga gacaactacg
     2881 cagtcgatcg ggaggcggca gagcgaattc ttctgctaat cccgagcctc cgcgacactg
     2941 tacgcgccga gcggggattt ctagtccgcg ctgtccgaca cttagccggc gacgcgaaaa
     3001 tccggcagtt cctcgacatc ggaactggtc tgccgacggc tagcaatact cacgaagtcg
     3061 cgcaggccgt ggcgccggat tctcgcatcg tctacgtcga caacgatccc ttgattatgg
     3121 ctcacgcccg tgcgctgctc accagtaccc tagacggtgc caccgactac gttcacgccg
     3181 accttcgcga acccgacata atcttggaag aagctgcccg gacgctggac ttcactcggc
     3241 cagtcgcgct catgctgtta gggattctca atttcatacc agataccgac gacgctcacg
     3301 cgattgtgca ccggctcctg gcgccgctgg ctccgggtag ctatctggtg atttcgcatc
     3361 ccacgacaga ggtcgatggt gaggcgatga aagatgccat gcggttctgg aaccaaagcg
     3421 gtgcggctcc gatagtgtct cggacctgtc agcagctcat ccgtttcttt gataatctgg
     3481 agctgctcga gcctggcgta gtctcgtgtt cattatggcg acctgatcca ctcgaagttg
     3541 gctcccctgt ggaggtgttt cacttcagtg gcgtcgggcg aaaactataa cgcccactgt
     3601 ccaggggaca actcatgagc gtgatcgcac ttcccgctcg ctccccgtgg tcgtgatcga
     3661 tcgctgcagg atgaccagag cggcgcgccg gggtggggaa gcccggcggg cggtctaggg
     3721 tgaccttcat ccggagttct ttacgggagg agtggagtgg ccgtacctcg gtcgagtcac
     3781 gatccgaccg gcggtcaggt tccgccacga tcgcagggac cgaccgcact gcgcattgcg
     3841 ttgggcactc agctgcgtcg gctccgtgaa gcgcgcggag tcagcgccga agcggccggt
     3901 tacgcgattc gggcatcgca tgccaagatc agtcgcatgg agctcggacg ggtgggcttc
     3961 aaggagcgcg acgtgtcaga tctgctcacc ctctacggca ttaccgacga gcacgagcgg
     4021 cgaacgttcc tggccctggc ccgcggggcg aacgtgccgg gctggtggca ccagtacagc
     4081 aacatcttgc cgagctggtt cgaaatgtac ctcggcctgg agcaggccag ctcagtcatc
     4141 cgtacctatc aaccgcaatt cctgcccgac ttgctgcaga cgcgagaggt tgcccacgcc
     4201 gtcattcagc ttggtcaccc agacgcgact cccggcgata tcgaacgccg ccttgcactg
     4261 cgcatggcgc gtcaggaaat cctcgtccag cctggagcgc tcaacctgtg ggtagtgttc
     4321 gatgaagcgg cgctatggcg gcttgatcag cgctccgcga tgcgggcaca gatccagcat
     4381 ctgatcaaga tgggggagct gcccaacgtc aggattcagg tgatgccgct cttcttcggt
     4441 gtgcaggtag cggtaggcgg cccgtttgtg atcatgcgat tctccgaacc cgacctgccg
     4501 gacatcgtct atctcgaaca gctcaccagc gccctgtatc tggacaagag ccaggatgtc
     4561 cagcactacc tgatggtgat ggatcgcttg tgcgtcgcgg ctaaatcacc ggctgagaca
     4621 atcaagttcc tcagcgacgc cctcaaagag gtgtgactcg cggttcggtc cacgccggat
     4681 ccttacctac gagacggcat gctctcctca ccacggccgc cgtgcatcgg agcgcctgag
     4741 gtatcaggct ggagacatgg cactgacact tggcgacgcc ccgctgtcct ctcgcccgcg
     4801 cgccaccgtg aactatcgga tcaacggccc cgggcaccgg ctgctgttcg agccgttccc
     4861 ccgacgggtc cgggcggtcc tcggcggcga gacgacgctg gacacctcca gcgggatgtt
     4921 gctgcacgag agcaacctgc tcccgcagct ctacctgccc agcggcgata ttcgcgaaga
     4981 cttgctcatt agcactgatc accgcacata ctgtcctttc aaaggagacg ccacgtactg
     5041 gtcagtgatg gtcaatggcc ggaccgctga caacgcggtg tggtcttatc ttgatccgct
     5101 gtccgaggct ggctggttac gcgattatgt agcgctgtac tgggattcga tggatgcctg
     5161 gttcgacgag gacgaggagg tggccgggca cctgcgtgac ccgtaccacc gggtcgacgt
     5221 ccggtccacc agccggcacg tacgggtggt cgctggtgac gaggtgatcg cccagtcccg
     5281 ccgggcggtg ctgctgtccg aaaccggcct gcccaaccgt ttctacctgc cggccgatga
     5341 tgtccgcacc gagttgctgg aactttccgg cacgcacacg gtatgcccgt acaagggcac
     5401 cgcgtcatac cacagcctcc gcacgtcatc ggagctcatc gccgacgtcg cctggtacta
     5461 cccggaaccg ctggagggag tgcgagcggt ccgcggatac ctgtgcttcg acgccgaagg
     5521 aatcgagacc tgggtggacg gtgtgcgcct cgtccgctag ccagaggtca ctgatctgag
     5581 ccgcggcagg tcgtcgcgga acgcgccccc aagggtaggc aaagggtcgt ccctggtgag
     5641 aggctggctc cgagattaat ggaccattaa ctggagacag cgctatgccc cctctgcggt
     5701 cgcgaacggt cacgcacgga cgcaacatgg caggcgcccg cgcgctgtgg cgtgcgaccg
     5761 gcatgaccga cgatgacttc ggcaagccga ttgtggctgt ggcgaacagc ttcacccagt
     5821 t
//
LOCUS       DASVXZ010000452         3380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1009818, whole genome shotgun sequence.
ACCESSION   DASVXZ010000452 DASVXZ010000000
VERSION     DASVXZ010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1009818"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..1299)
                     /locus_tag="VF788_09295"
     CDS             complement(115..1299)
                     /locus_tag="VF788_09295"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarP family serine protease"
                     /protein_id="HEX8934371.1"
                     /translation="MNWVDVLVLVLALLAGTSGARQGMVTAAASFIGVLAGAVIGVRI
                     APSLIASYESPEVRVALGVSIVIVLVAIGETLGVLLGRAVQRRIDADALRQLDSFLGA
                     VVQGVAALVVAWLVALPLTKSSTYTNLTSAVRDSAVLRVVDTLMPNVLRELPSKLTAL
                     LDVSGFPDILPPFATTPITDVGQPDPVLLNSPVVRQVKESVLKVRGRARSCSRALEGS
                     AFVVAPQRVITNAHVVAGTDRVQVESRDGTLDATVVSYDPETDVAVLRVPGLRAPVLQ
                     LAAKPAASGMSGLVLGYPLDGPYTASAARVRDRIHLRGPDIYNASTVVRNVYTVRAVV
                     RSGNSGGPLIDGSGQVLGLVFGAAVDNDETGFVLADDEIADDVAASVHRTAEVSTGTC
                     AS"
     gene            complement(1296..2015)
                     /locus_tag="VF788_09300"
     CDS             complement(1296..2015)
                     /locus_tag="VF788_09300"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEX8934372.1"
                     /translation="MTGPSASGSLVAGPLVDPASVPGWLAMLVQRTAALTPGDLVRIP
                     EPRPGGREAAVLVLFAENSHSGEPDVLLQLRSRELSAHPGQVCFPGGAVDNADDGPVA
                     TALREAREEVGVRADDVRPVAVLPKLYLPPSDFLVTPVLGHWERPGPVTPVDYRETVA
                     VARVLLRVLADPANRLIVRGPSGYPYPAFLVPGMLVWGFTGGLLAALLTMGGWARPWE
                     PAAEYDLEAAWRLAERTEVIQ"
     gene            complement(2020..2637)
                     /locus_tag="VF788_09305"
     CDS             complement(2020..2637)
                     /locus_tag="VF788_09305"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX8934373.1"
                     /translation="MTAVLALALVVALWPAERPTALPASPAATRSAAGPPAGIDQLRA
                     RAALQPCPAAHAGSTDVRGPLSGLVLPCLGQPGTVELAAALAGRPALLNLWGPLCQPC
                     AQELPALAAYATERGAVPVLGVEVQQLPEGALDTLAALNVHYPSVSDPEGRLRAALRA
                     PPVIPLTYLVSADGRVNQVNPPEVMRSPEQVRAVVARYLGPEAIG"
     gene            complement(2661..>3380)
                     /gene="nth"
                     /locus_tag="VF788_09310"
     CDS             complement(2661..>3380)
                     /gene="nth"
                     /locus_tag="VF788_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEX8934374.1"
                     /translation="YPEAHCELDFSTPLQLAVATILSAQTTDKRVNETTPALFERYHT
                     AADYAAADRDELEKLIRPTGFYRNKAAALIGLGAALVEHFGGEVPARLTDLVTLPGIG
                     RKTANVILGNAFDVPGITVDTHFGRLVRRWGWTEHDDPVKVEQAISELIPKRDWTMLS
                     HRVIFHGRRVCHARRPACGVCPLAADCPSYGTGPTEPEVAAALLRGPERPHLLAMAGL
                     PADLEGDPAAEAEAGVPGAMS"
BASE COUNT          578 a         1221 c         1121 g          460 t
ORIGIN      
        1 tcgactttgg tcgggtcggc caccgccgga ttttccggcc cattggcagc gcaacccatc
       61 gcgagcagcg ctaccgcggc caccagcaca gcaccgttcg tcaccgcagg ccactcagga
      121 ggcgcaggtg ccggtggaga cctcagcggt gcggtgcact gatgcggcca cgtcgtcggc
      181 gatctcgtcg tcggctagca cgaaaccggt ctcgtcgttg tccacggcgg cgccgaacac
      241 caggccgagg acctggccgg acccgtcgat cagtggcccc ccggagtttc cgctgcgcac
      301 caccgcgcga acggtgtaga cgttacggac cacggtggag gcgttgtaga tgtccgggcc
      361 acgcaggtgg atgcggtccc gcacccgggc agccgaggcc gtgtacgggc catccaacgg
      421 gtaaccgagc accagcccgc tcatgccgga ggcggccggc ttcgcggcca gttgcagcac
      481 cggtgctctc aacccgggta cccgcaggac cgcaacgtcg gtctccgggt cgtagctgac
      541 cactgtggcg tccagcgtgc catcccggga ctccacctgg acccggtcgg tgccggcgac
      601 cacgtgcgcg ttggtgatca ctcgctgcgg tgccacgacg aatgcgctgc cttccagcgc
      661 ccgggaacac gacctggctc gcccgcgaac cttgagcacg ctttccttga cctgccgcac
      721 gaccgggctg ttcagcagca ccggatcggg ttgcccgaca tcagtgatcg gggtcgtcgc
      781 gaagggaggg aggatgtcgg gaaatcccga gacatcgagc agtgcggtca gcttggaggg
      841 cagctcacgc agcacgttgg gcatcaacgt gtccacaacg cgcaacactg cggagtcccg
      901 cacggccgac gtcagattgg tataggtgga cgatttggtg agcggcaggg caaccaacca
      961 ggccaccacc aaggcggcaa caccctgcac caccgcaccc aggaagctgt ccaactgacg
     1021 cagggcgtcc gcgtcgatgc ggcgctgcac cgccctaccc agcagcacac cgagcgtctc
     1081 gccgatcgcg accagcacga tcacgatcga cacgccgagc gcgacccgga cctccgggct
     1141 ctcgtaacta gcgatcagcg agggggcgat gcgcaccccg atcaccgcac ccgccagcac
     1201 accgatgaag gacgccgccg cggtcaccat gccttgccgg gcaccggagg tgccagcgag
     1261 caaggccagc accaggacga gcacgtccac ccagttcact ggatcacctc ggtccgctcg
     1321 gcgagccgcc atgcggcttc caggtcatac tcagccgccg gctcccaggg ccgtgcccag
     1381 ccgcccatcg tcagcagcgc agccagcaac ccgccggtga acccccagac aagcatccca
     1441 ggtacgagga aagcgggata cgggtacccg ctgggccccc gcacgatcag ccggtttgcc
     1501 gggtccgcga gcacccgcag cagcacccgg gcgacggcaa cggtctcccg gtagtccacc
     1561 ggggttaccg gtccgggtcg ctcccaatga ccgagcaccg gcgtgaccag gaaatccgac
     1621 ggcggcaggt acagcttcgg cagcaccgcg acgggccgca cgtcatcagc gcgaaccccg
     1681 acctcctcgc gcgcctcccg cagcgccgtc gcgaccgggc cgtcgtcggc attgtccacc
     1741 gctcccccgg ggaagcagac ctgaccgggg tgtgcggaca gctcccggga gcgcaattgc
     1801 agcaacacat ccggctcgcc actatgtgag ttctcggcaa agagcaccag caccgccgct
     1861 tccctgccgc ccggtcgcgg ctcagggatc cggacgagat cgccgggggt caacgcggcg
     1921 gtgcgctgta ccagcatggc taaccagccc ggcaccgagg ccggatcgac gagcggccca
     1981 gccacgagcg acccggatgc cgacggccca gtcacgcggt catccgatcg cttcggggcc
     2041 gaggtagcgt gcgacaaccg cgcgcacctg ttccgggctg cgcattacct caggtgggtt
     2101 gacctggttc acccggccat cggcggaaac caggtatgtc agggggatga ccggcggggc
     2161 gcgcagtgca gcgcgcaacc tgccttcggg atcgctgacc gagggatagt gcacgttcaa
     2221 tgcggcgagc gtatccagcg cgccttccgg cagctgctgt acttccacgc cgagtaccgg
     2281 caccgcgccc cgctcggtgg cgtaggcagc cagcgcaggc agctcctggg cgcatggctg
     2341 gcacagcggc ccccacaggt tgagcaacgc cggccggccg gccaacgccg cggccagctc
     2401 gaccgttccc ggctggccca ggcaaggcag caccagaccc gatagcggcc cccgaacgtc
     2461 agtgctgccc gcatgagcgg cggggcaagg ctggagtgcc gcccgggctc tcaactggtc
     2521 aatgccggcc ggcggaccgg cggcggaccg cgtggctgcc ggcgacgctg ggagcgccgt
     2581 cgggcgctct gccggccaca gcgccacgac cagcgcgagc gccaggaccg ccgtcaccag
     2641 caaccagcgc agcgcgacct tcacgacatt gccccaggga ccccagcctc ggcttccgca
     2701 gcgggatcgc cttccaggtc ggccggcaat ccggccattg ccagcaaatg cggcctctca
     2761 ggcccgcgca acagagcggc cgcaacctcg ggctcggtgg gaccggtgcc gtaggacggg
     2821 cagtccgcgg ccagcgggca caccccacag gctgggcgac gggcatggca tacccgtcgc
     2881 ccatgaaaga tcacccggtg ggacagcatc gtccagtccc gttttgggat gagctcgctg
     2941 atcgcctgct cgaccttcac cggatcgtcg tgttcagtcc agccccaccg gcgcaccagc
     3001 cggccgaagt gggtgtccac cgtaatgccg ggcacatcga aggcattgcc gaggatgacg
     3061 ttggcggttt tgcggccgat cccgggcagc gtgacgaggt cggtcagccg ggcgggtacc
     3121 tcgccgccga agtgctcgac cagcgccgcc ccgagcccga tcagcgccgc cgccttgttc
     3181 cggtagaagc ccgtgggtcg gatcagcttc tccagctcat cccgatcggc agccgcgtag
     3241 tcggctgcgg tgtgatagcg ctcgaacaac gccggtgtgg tctcgttgac ccttttatcg
     3301 gtcgtctgcg cagacagaat ggtggcgaca gcgagttgca gcggtgtgga gaagtccagc
     3361 tcgcaatgcg cctccgggta
//
LOCUS       DASVXZ010000453         9225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_496293, whole genome shotgun sequence.
ACCESSION   DASVXZ010000453 DASVXZ010000000
VERSION     DASVXZ010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9225
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496293"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..975
                     /locus_tag="VF788_09315"
     CDS             <1..975
                     /locus_tag="VF788_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934375.1"
                     /translation="YAMAAGTLSLGTVVGAVIIFSYLRWPLDSLGWLLAETGNAIAAT
                     TRYWEVRDAVRTVVDPPQPRAPAHPVRGSLRLEGVHFCYPGARTEVLRGVDLEVRPGE
                     TVALVGATGSGKTTLTALVPRLADATRGRILLDGVDVRELALTDLRGIVAMSFEDPVL
                     FSASVRENVALGCSSLGAPEASDDEVRRALRVAHAEEFVDALPWGLDTRIGEQGLTLS
                     GGQRQRLALARAVLGNPAVLVLDDPLSALDVHTEAEVEAALRRVLRGVTALVVAHRPS
                     TVQLADRVALLVEGRIAAIGAHSTLLADVPEYRRLLSTMDSEVPAVTR"
     gene            972..2795
                     /locus_tag="VF788_09320"
     CDS             972..2795
                     /locus_tag="VF788_09320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934376.1"
                     /translation="MTQDWRGVAAEDLEEIDTATGLRLAARSRRLLGSLLRPQLRGVC
                     GAVGLLIADQVALLAGPLLIAAAIDRGIPATVAGRPGSLLWCIAGYAVAGAADALIVR
                     AFLRLSGRIGEDVLIDLRERVFAQIQRLPLAFHERYTSGRVISRLTSDLDSLQDLLDQ
                     GLDGFFISLLSILGIGAVMLYLDAPLGLVALAGFIPLALLIRWYRRYSQRTYRRTRTW
                     IAQVIVHFVETMNGIRAVQAFRREQRNSSIMDRLNNSFADADTEAFGLIARFTSTVRL
                     VGGVSVAVTLLLGGLRVLEGTLTLGVLAAFLLYLRRFYDPLDELAMFANSYASAAAAL
                     EKISGVLDERSTVGDPIAPVPLPAPVRGKVTFDGVRFSYGGPEILPRLDLVIPAGQTV
                     ALVGATGAGKSTVAKLLARFYDPVEGAVRLDGVDLRSMSDTELRRAVVMVTQESFLFS
                     GSVADNIALAAPVSGHSASRSDVVAAARAVGADEFITALPEGYDTDVRKRGARLSAGQ
                     RQLVSFARALLADPAVLVLDEATSSLDIPSEQAVQVALRTVLAGRTALIIAHRLSTVL
                     VADRVLVLANGAVIEDGAPATLISGTGAFADLHTAWRAALA"
     gene            complement(2792..3133)
                     /locus_tag="VF788_09325"
     CDS             complement(2792..3133)
                     /locus_tag="VF788_09325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934377.1"
                     /translation="MTIRSSRPGIFAAATALAGSLVSPGRTGRSTTSIAEGVQEFPPH
                     RMVSAREVALDDGFRDLLADALIARHRAKIGDQPELMFIRSTWDADEWARAEADQLLA
                     HIDAVMERRSY"
     gene            complement(3325..3606)
                     /locus_tag="VF788_09330"
     CDS             complement(3325..3606)
                     /locus_tag="VF788_09330"
                     /inference="COORDINATES: protein motif:HMM:NF022258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2537 domain-containing protein"
                     /protein_id="HEX8934378.1"
                     /translation="MPAPSGEPTPWATGLTVSAVVAVMVGIALLVLSQALVLNGRGVV
                     ALSNLLVAVGLTPSIWLGRNTPIWRWVAYGTAAGITLTWLAFLITLLAD"
     gene            complement(3617..4429)
                     /locus_tag="VF788_09335"
     CDS             complement(3617..4429)
                     /locus_tag="VF788_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010308762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX8934379.1"
                     /translation="MGEIVEVRDVDDPRLADFRDLTLADRRPDRPGGRGLVIAEGVTV
                     VRRLLDSPYPPRAVFGVPAKISQLAADVPNAPCYAGSADLMAQVVGFHLNRGVLATAD
                     RAPVPSVPQLITRSHHLAILEGINDHENLGGLFRNAAALGVDAVLLGPGCADPLYRRS
                     VRVSMGHVLQVPFAPLNQWTEDLQQLRSAGFRVAALTPATEAVPLVDADVDHGRIAWL
                     VGAEGPGLSAEALTAADLAVRIPMAPGVDSLNVATAAAIAFAGARRVESRPV"
     gene            4547..6043
                     /locus_tag="VF788_09340"
     CDS             4547..6043
                     /locus_tag="VF788_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HEX8934380.1"
                     /translation="MGESAIDTVYTKRDLQRYREKTQRCLDALARMLAGGSFALGPEQ
                     MGLELELNLVDENLDPAMANQTVLEHIDDPAFQTELGQHNIEINVAPRPLAADESLEL
                     ERELRAGLNTANDAARSAGVGLVMIGILPTLRPDHFDERWMSPKSRYALLNRQILATR
                     TEDLELDIEGVPLAGEKPERLLRAADSILPESGCTSAQLHLQVGPGEFAAHWNAAQAL
                     AGAQVAVAANSPFLLGHALWHETRIPLFEQATDTRSPELCNQGVRPRVWFGERWITSV
                     FDLFEENVRYFSPLLPLIQDEDPLAVLAAGVAPSLSELRLHNSTIWRWNRPVYDVRDG
                     VPHLRIENRVLPAGPTVIDVLANAAFYFGAMRGLVEAEVPVWSQMSFRAAQENLYVGA
                     RLGMDALLHWPEIGWVRPDELVLGTLLPLAHDGLRSCGMSDAARERYLAVIEKRCAAR
                     RTGASWQRATVQKLADRGADRPTALAGMLRGYVEQMHSNLPVHEWPLP"
     gene            complement(6220..6660)
                     /locus_tag="VF788_09345"
     CDS             complement(6220..6660)
                     /locus_tag="VF788_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8934381.1"
                     /translation="MGDTQEIDRPVLASRLRLAVVRLNRRLRAQREVEAVVTLTQLSA
                     MASLHRHGAMSPGELAARERVQPPSMTRVIAALVERGFVDRSPHPTDGRQTVVALTGT
                     GRDYVDAEVTARERWLDARLGELSADERDVLYRAAEIIDRIASC"
     gene            6728..6958
                     /locus_tag="VF788_09350"
     CDS             6728..6958
                     /locus_tag="VF788_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2530 domain-containing protein"
                     /protein_id="HEX8934382.1"
                     /translation="MTPPLPRGLADPRPVVGVGTVVWFATAVVLLVSGGPAAWMWACL
                     TGGLLGFVGFAMIHWQRSAAQRGARGARQDLL"
     gene            complement(7140..>9225)
                     /locus_tag="VF788_09355"
     CDS             complement(7140..>9225)
                     /locus_tag="VF788_09355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8934383.1"
                     /translation="PEAPAQWSLCWTLPIDTDGTPLPLAAEVLHAPTPTAERLTLPAR
                     LIGTVPVDSSRRHVHPGPAVDLLLDIAAQAYPELADALAPAQRITLVPVPGFPASEVD
                     AVLRERIVAALRHARWLPAACGGEVVPADALVLDVPLPALAELLGDVVPDLLDAELAA
                     PAHTAALTALGVTRLRPAAIAELLAGLDRPPSWWRHCYAALTPLLDADLAVRDELGAL
                     PVPLADGRTVTGPRGVLLGEVEGLPLTELRLVHPDAAHPLLERLGARPVGPAELLDAL
                     RPAVERSVDEAEDGVDVTDLATAVLSLAGRLTEPAATRPWLGALALPADTGAPRRADE
                     LVLPGGALRELLAVDAPLGVLDPVFAATAPATALRAVGVLDSFAVLDDPYPGGPDHDL
                     DDEEQWWAQRGDSPERLLAVRDLDLVDDGCWPVALRRIATDPAGLAALREPGGYTGWW
                     LARHARLGGHPPPHWRLPGALTLEGLYDVVPLCDRLSECDTDEALLAAAGVRTGLGIT
                     GPADATDLLARLADPARVVTPAVVHAAHAALAAADLDPAEVDPPARVRAVTGEVVDAE
                     GAVVLDAPWLAAVLPAGELVSGGDPGALADLLDLPLATERVRAELLDSGGGHSVRWAE
                     LVEVVAVCAAAGLAVPEGALRLHENLRVRHNGAEHSVPFWVTPEGTVHATDPVRAALL
                     LGAGPPSGGTLH"
BASE COUNT         1500 a         3192 c         3129 g         1404 t
ORIGIN      
        1 tatgcgatgg cggccggaac gctatccctg ggaaccgtgg ttggagcggt catcattttc
       61 agctacctgc gctggccgct ggactccttg ggctggctgc tggccgagac cggcaatgcg
      121 atcgcggcga ccacccggta ctgggaggtg cgcgacgccg tccgcaccgt ggtcgacccg
      181 ccgcaacccc gagccccggc gcatccggtg cgcggctcgc tgcgcctgga aggggtgcat
      241 ttctgctacc cgggggcccg caccgaagtg ctgcgcggag tggacctgga ggtgcggcct
      301 ggcgagacgg tggcgctggt aggagccacc ggcagcggca agacgaccct gaccgcactg
      361 gtgccacggc tggccgacgc cacccgcggg cggattcttc tcgatggcgt cgacgtgcgg
      421 gagttggcac tgaccgacct gcgcgggatc gtggccatgt ccttcgagga cccggtgctg
      481 ttctccgcgt cggtccggga gaacgtggcg ctgggatgtt cgtcattggg cgccccggag
      541 gccagcgacg acgaggtgcg ccgggcgctg cgggtggcac acgccgagga attcgtcgac
      601 gcgctgccct ggggcctgga cacccggatc ggcgagcagg gtctgacgct ttccggtggt
      661 caacgccagc ggctggcgct agcccgtgcg gtgctcggga atccggcggt gctggtgctc
      721 gacgacccgc tgtcagcgct ggacgtgcac accgaggccg aggtcgaggc ggccctgcgc
      781 cgcgtattgc gcggcgtgac tgcgctggtg gtggcccacc ggccatccac cgtgcagctc
      841 gccgaccggg tggcgttgct cgtcgagggc cggatcgcgg cgatcggcgc ccactccaca
      901 ttgcttgccg acgtaccaga ataccgccga ctgttgtcca caatggatag cgaagtcccg
      961 gcggtgaccc gatgacacag gactggcgag gcgttgccgc cgaggacctc gaggagatcg
     1021 acaccgctac gggactgcgg ctggctgccc gctcccgcag attgctcggc tcgttgctgc
     1081 gcccacagct gcgcggagtg tgcggtgccg tcggactgct gatcgccgac caggtcgcgc
     1141 tgctggccgg accgctgctg attgccgcgg cgatcgaccg cggcattcca gccaccgtgg
     1201 cgggccggcc cggttcactg ctctggtgca tcgcgggcta cgcggtggcc ggcgcggccg
     1261 acgccttgat cgtccgcgcg ttcctgcggc tgtccgggcg aatcggagag gacgtgctga
     1321 tcgatctgcg tgagcgggtg ttcgcgcaga tccagcggct gccattagcc ttccatgagc
     1381 gctacacctc tggacgggtg atctcccggt tgaccagcga tctggactcc ctgcaggatt
     1441 tgctggacca aggactcgat gggtttttca tctcgctgct gtccatcctc ggcatcggtg
     1501 cggtgatgct gtacctggat gcgccgctgg gcctggtggc gctggccggc tttatcccgc
     1561 tggccctgct catccgctgg taccggcggt actcgcagcg cacctaccgc cgcacccgca
     1621 cctggattgc ccaggtgatc gtgcacttcg tcgagaccat gaacgggatc cgcgcagttc
     1681 aggcgtttcg ccgggagcag cgcaattcct ccatcatgga ccggctcaac aactccttcg
     1741 ccgacgccga cacagaggca ttcgggctga tcgctcggtt cacctcgacc gtgcggctgg
     1801 tcggcggggt gtcggtagcg gtgacgctgc tgctcggtgg gctgcgggta ctcgaaggca
     1861 ccctgactct gggtgtgctc gcggcgttcc tgctgtacct gcgccggttc tacgatccgc
     1921 tcgacgagct ggcgatgttc gccaactcct atgcctcggc ggccgcagca ctggagaaga
     1981 tctccggggt cctcgacgag cgatccaccg tcggtgatcc catcgcaccg gtgccgctgc
     2041 ccgccccggt acgcggcaaa gtgaccttcg acggggtgcg cttctcctac ggcggaccgg
     2101 aaatactgcc gcggctggac ctggtgatac cagctgggca gaccgtcgcc ctggtcggcg
     2161 ccacgggggc aggtaagtcg acggtagcca agctgctggc gcggttctac gacccggtgg
     2221 agggcgccgt ccggctggac ggggttgatc tgcgctcgat gagcgacacg gagctgcgcc
     2281 gggcggtggt gatggtgacc caggagtcgt tcctgttctc tggatcggtc gccgacaaca
     2341 tcgcgctggc cgcgccggtt tctggccact cagcgtcccg gtcggacgtg gtggcagcgg
     2401 cccgcgcagt gggcgccgat gagttcatca ccgcgctgcc cgaggggtat gacaccgacg
     2461 tgcgcaagcg cggcgcgcgg ctatccgccg ggcagcgcca actggtgtcc ttcgcacgcg
     2521 cactgctcgc tgaccctgcc gtgctggtgc tggacgaggc cacctcgtcg ctggacatcc
     2581 cctccgagca ggcagtgcag gtcgcactgc gcaccgtgct ggcgggtcgc accgcattga
     2641 tcatcgcgca ccggctgtcc accgtgctgg tcgccgaccg cgtcctggta ctcgccaacg
     2701 gcgccgtcat cgaagacggc gccccggcaa cgctgatctc aggtaccggc gccttcgccg
     2761 atctccacac cgcctggcgc gccgctctcg cctagtagct ccgacgctcc atcaccgcgt
     2821 cgatatgcgc tagcagctgg tcggcttcgg cccgggccca ctcgtcggca tcccacgtcg
     2881 atcggatgaa catgagttcc ggctggtcgc cgatcttcgc gcggtgacgc gcgatcaggg
     2941 cgtcggccag gaggtcgcgg aagccgtcgt cgagggcaac ctcgcgggca ctcaccatgc
     3001 ggtgcggcgg gaactcctgg acgccttcag cgatactggt ggtgctgcgg ccggtgcggc
     3061 cgggcgaaac cagcgagccc gccagggcag tcgcagcagc gaagatgcca ggccgggagc
     3121 tacgtatagt cacaccgtgt cctctccatc gagcacgaaa tcgcccacat tgagtaaagt
     3181 tgtgagatat gaccgaccac ggaatgcaat ctgaacggac gaggaacgcc agctaccgat
     3241 agctccctcc ttcccaagct ccacagcgga gctgttggac agcaccgccg gtgaggtcgg
     3301 cagcctaagg gcaagggcaa agcgctagtc agccaggagg gtgatcagga aggcgagcca
     3361 ggtgagcgtg atgccggcgg cggtgccgta ggccacccag cgccagatcg gggtgttgcg
     3421 gcctagccag atcgagggcg tcagccccac ggcgactagc agattcgaca gggctacgac
     3481 tccgcgaccg ttgagtacca gcgcctggga caagacgagc agcgcgatcc cgaccatcac
     3541 cgcgaccacc gcgctgacgg tgagaccagt cgcccacggc gtcggttcac cggacggtgc
     3601 aggcacgtcg ctcactttaa acggggcgac tctccacgcg gcgggcgccg gcgaaggcga
     3661 tcgccgcggc tgtggcgacg ttgagcgagt ccaccccggg ggccatcggg atgcgcacag
     3721 ccagatccgc tgcggtcagg gcttcggcgg acagtcccgg accctcggca cccaccagcc
     3781 acgctatccg gccgtggtcc acatcggcgt caaccagcgg cactgcctct gtcgccgggg
     3841 tgagcgctgc gacccggaaa ccagccgagc gcagctgctg cagatcttca gtccactggt
     3901 tcagcggcgc gaacggaacc tgaagcacgt gccccatgga cacccgcacg ctgcgccggt
     3961 atagcgggtc agcgcaaccc gggccgagca ggaccgcatc gaccccaagc gccgccgcgt
     4021 tgcgaaacaa cccgccgaga ttctcgtggt cgttgatccc ctcgagaatc gcgaggtgat
     4081 gcgatcgggt gatcaattgc ggtaccgaag ggactggcgc ccggtccgcg gtggccagca
     4141 caccgcggtt gagatggaaa ccgaccacct gtgccatcag gtctgccgac ccggcgtagc
     4201 acggcgcgtt ggggacgtcg gccgcgagct gggagatctt ggcgggcacg ccgaatacag
     4261 cccgcggcgg gtacggcgag tccagtaacc ggcgcaccac ggtgaccccc tcagcgatca
     4321 ccagacctcg ccccccggga cgatccgggc gacggtcggc gagcgtgagg tcacggaaat
     4381 cggccagtcg ggggtcgtcc acgtcgcgca cctcgacgat ctcgcccaca ctgtcagttt
     4441 tgcaaacgac gcaggacatc gtggccagac ccaccgattc ggcggctggt caccgcgcgc
     4501 ggccctgtgt cacggtgagc gcgccggggg aagcggaggt cgtcgaatgg gcgagagcgc
     4561 gatcgacacc gtctacacta agcgtgatct gcagcgatac cgggagaaga cccagcgttg
     4621 cctggacgca ctggcccgga tgctcgccgg aggcagcttc gctctcggtc ctgagcaaat
     4681 gggcctggaa ctcgaactga acctcgtcga tgagaacctc gatcccgcga tggccaacca
     4741 gacggtgctg gagcacatcg acgacccggc tttccaaacc gagctcggcc agcacaacat
     4801 cgagatcaac gtcgcacctc ggccattggc cgccgacgaa tccctggaac tcgagcggga
     4861 actgcgagcc ggcctgaaca ccgccaacga tgcagcccgc tccgccgggg tgggcctggt
     4921 gatgatcggc atcctgccga cgctgcgacc agaccacttc gatgaacgct ggatgtcgcc
     4981 caagtcccgt tatgccctgc tcaatagaca gattctggct acccggacgg aggatctcga
     5041 gctcgacatc gaaggagtgc cgctggcggg agagaaaccg gaacggctgc tccgcgccgc
     5101 cgactcgatc ctgccagaat ccgggtgcac ctcggcgcag ctgcacctcc aggtcggccc
     5161 cggcgagttc gccgcgcact ggaacgccgc acaagcgctg gccggagcgc aggtggcggt
     5221 ggccgcgaac tcgccattcc tgctcggcca tgcgctgtgg catgagaccc gtatcccact
     5281 gttcgagcag gccaccgaca ctcgctcgcc ggagctctgc aaccagggag tccgcccgag
     5341 ggtgtggttc ggcgaacggt ggatcacctc ggtgttcgac ctgttcgagg agaacgtgcg
     5401 ctacttctca ccgttgctcc cgctgatcca agacgaggat ccgctggcgg tactcgcggc
     5461 cggcgttgct ccctcactgt ccgaactacg gctgcacaac agcacgatct ggcgctggaa
     5521 ccggccggtc tatgacgtga gggacggggt gccgcatcta cgcatcgaga accgggtact
     5581 gcctgctggg ccgaccgtca tcgacgtgct ggccaacgcg gcgttttact tcggtgccat
     5641 gcgggggctg gtcgaggccg aggtgccggt gtggagtcag atgtccttcc gcgccgcaca
     5701 ggagaatctg tacgtgggtg cccggctggg tatggacgca ctccttcatt ggccggagat
     5761 cggctgggtc cgacccgatg agctggtgtt gggcacactg ctaccactgg cccatgacgg
     5821 gctacgcagc tgcgggatgt ccgatgcagc gcgggaacgg tacctggcgg tgatcgagaa
     5881 gcggtgcgcg gcacgacgaa ccggcgccag ttggcaacgc gctaccgtgc agaaactggc
     5941 cgaccggggc gcggaccgcc ccactgcatt ggccggcatg ctgcgcggct atgtcgaaca
     6001 aatgcactct aacttgccgg tgcacgagtg gcccctgcct tgaacttcgc ccgcttgaac
     6061 cgcggcggcc gtcgatctgg gttagtcgtc gggcccgacc gagagccctg gggccgggcc
     6121 cgacgtattc caactgcgtt cgccaggact cccaccacga agccggctgc cttaagttag
     6181 gctaaccttc attgcctgtc aagtggcgtc ccatcgagct cagcaacttg ctatccgatc
     6241 aatgatctcg gccgcgcggt acagcacgtc gcgctcatca gccgagagct cccccagccg
     6301 ggcatcgagc cagcgctctc gtgcggtgac ctcggcatcg acatagtccc ggccggttcc
     6361 ggtcagcgcc accacggttt gccggccgtc agtgggatgc gggctgcgat caacgaagcc
     6421 acgctcaacc agggcggcga tgacccgggt catcgatggc ggttgtacgc gctcccgcgc
     6481 tgccaactcg cccgggctca tcgcgccgtg gcggtgcagc gaggccatag cagagagctg
     6541 ggtaagcgta actaccgcct cgacctcgcg ctgggctcga agtcgccggt tgagccggac
     6601 cacggcaagc cggagccggc tggccagcac cggccgatcg atttcctggg tgtcccccat
     6661 cacagtcaca tcgttaactt agctcacgat ctgggtcgcg cgagaaccac tcgctaggct
     6721 tcgtgaggtg acccctccgc tgccccgcgg tctcgccgat ccgcggccgg tggtcggtgt
     6781 cggcacagtc gtatggttcg ccacggcggt agtgctgctg gtatccggtg ggccagcagc
     6841 gtggatgtgg gcgtgcctga ccggcgggtt attagggttc gtcggtttcg ccatgatcca
     6901 ttggcagcgc agcgcagcgc agcgcggcgc ccgcggcgct cggcaggatt tactctgagc
     6961 cggcccgctc agtcagatct agctgttggg cctgcagatt accgggttgt gcggccgcga
     7021 atcctgcgaa cgggccgcac aaccctaccc cccgaggcgc cagcgtcgca taaagttaat
     7081 atccgcacaa gcggtgcaaa tcctcaattg tccccgcaga atcaggtcgg gcattccgat
     7141 caatgcagtg tgcctccaga aggtggaccg gcacccagca gcagggcggc gcgcaccggg
     7201 tcggtggcgt gcactgtgcc ttccggcgtg acccagaagg gcacggaatg ttcggcgccg
     7261 ttgtggcgta cccgcaggtt ctcgtgcagc cgaagagcgc cttccgggac ggcgagtccc
     7321 gcagcggcgc ataccgccac cacctccacc agctcagccc accgcacgct gtgcccaccg
     7381 ccagaatcga gcagttcggc cctcacccgc tcggtggcca gcggcagatc cagcaagtca
     7441 gccaacgcgc ccgggtcacc tccggacacc agctcgccgg ccggcagcac agccgccagc
     7501 cacggcgcgt cgagcaccac cgcgccctcg gcgtcgacca cctcaccggt cactgcccgc
     7561 acccgagccg gcgggtccac ctcagcggga tccaaatccg cggcggccaa cgcggcgtgc
     7621 gcggcgtgca ccacagcggg cgtgaccacg cgggccgggt cagccaaccg ggccagcagg
     7681 tcggtggcgt cggcaggccc ggtgataccc aagccggtgc gcacgccggc cgcggccagc
     7741 agcgcctcgt cggtgtcgca ctccgacaat cggtcgcaca ggggcaccac gtcgtaaagc
     7801 ccctccagcg tgagcgctcc tgggaggcgc cagtgcggcg gcgggtgccc acccaatcga
     7861 gcgtgccggg ccagccacca gccggtgtag ccacccggct cgcgcagcgc ggcgagccca
     7921 gcagggtcgg tggcgatccg gcgcagcgcc accggccagc aaccatcgtc cacgagatcc
     7981 aggtcccgga cggccagcag ccgctcgggt gagtcaccgc gctgcgccca ccactgctct
     8041 tcgtcatcga ggtcgtggtc cggacccccc gggtagggat cgtcaagcac cgcgaaagaa
     8101 tccagcacgc cgaccgcgcg gagcgccgta gcaggcgctg tggcagcgaa tacggggtcc
     8161 agcacaccca gcggggcatc caccgccagc agctcccgca acgccccgcc aggcagcacc
     8221 agctcatcgg cacgccgcgg cgccccggtg tccgcgggca gcgccagcgc acccagccag
     8281 ggccgagttg cggcgggttc ggtcagccga ccggccagcg acagcaccgc cgtcgcgagg
     8341 tccgtgacgt ccacgccgtc ctcagcctca tcgacgctgc gctcgacggc ggggcgcaat
     8401 gcgtcgagca actccgccgg acccaccgga cgggccccga gccgctccag cagcgggtgc
     8461 gcggcatccg gatgcaccaa tcgcagctcg gtgagcggca gaccctcgac ctcacccagc
     8521 agcactccgc gcgggccagt gacggtgcgc ccatcagcca acgggaccgg tagcgcacca
     8581 agctcgtcgc ggaccgccag atcggcatcc agcagcgggg tcagtgccgc gtagcagtgc
     8641 cgccaccagg acggtggccg gtccaaccca gccaacagct ctgcaatggc cgccgggcgc
     8701 aaccgggtca ccccgagcgc ggtgagcgcg gcggtatgcg cgggcgcggc cagctcggca
     8761 tcgagcaggt cgggtaccac gtcccccagc agctcagcca gtgccggtaa aggcacgtcc
     8821 agcaccagag catcagccgg cacgacctct ccaccacagg cagcgggtag ccaccgagca
     8881 tggcgcaacg ccgccacaat cctctcgcgc agcaccgcgt cgacctcgct cgccgggaac
     8941 ccaggcaccg gcaccagggt gatgcgctga gccggcgcga gcgcatcggc gagctcggga
     9001 taagcctggg cggcaatatc cagcaacaag tcgacagccg gaccgggatg aacgtggcgc
     9061 cgggaagaat cgaccggcac ggtgccaatc agccgcgcgg gcagggtgag ccgctccgcg
     9121 gtgggcgtcg gggcgtgcag cacctccgca gccagcggta acggggtgcc gtcggtgtcg
     9181 atgggtagtg tccagcacag gctccactgc gctggcgcct cgggt
//
LOCUS       DASVXZ010000454         4220 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1572492, whole genome shotgun sequence.
ACCESSION   DASVXZ010000454 DASVXZ010000000
VERSION     DASVXZ010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4220
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1572492"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..776)
                     /locus_tag="VF788_09360"
     CDS             complement(<1..776)
                     /locus_tag="VF788_09360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934384.1"
                     /translation="MSDSPQLKEPERADASGGAPAAGVSAEPLSATDPAPVELPQAQS
                     APPTEAPADSPPGLTFGFNLEKIAGQGEDSDPILRDGRELGLIAVFDGMGGAGGTVYE
                     TSEGPRTGAYLASRLARDVVEQRMVALLDPEWNLDGAAAAADLQRAVQAALRARLVEL
                     NAPASGLRSRLLRALPTTMALAALQRREPSGDRWACHVLWAGDSRVYVFQPGPGAQQL
                     TVDDIRDRGDAMANLREDSVVSNAISADTEFVVHHRKIELT"
     gene            complement(773..1564)
                     /locus_tag="VF788_09365"
     CDS             complement(773..1564)
                     /locus_tag="VF788_09365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HEX8934385.1"
                     /translation="MTPVQESSPIALADPAASEPAAAAPAAGAGQSSLAAPTAAPRGL
                     SYAVDIVFCIDVTGSMTPIIDAVKANALRFYDDVQTNLTAKGKNVDELRVRVVAFRDF
                     VADGEAALQESPFFHLPAEQGEFSDFVNGLLAEGGGDAPESGLEAVALAVNSPWTTRG
                     DRRRQVIVVWTDQPAHPLEPAVVSAELRKRVPADFNALTDLWEDAQGPMGASSKRLIL
                     FAPDGPGWSDISGVWENVVHHPSQAGGGLSDVDYGTIVDSIGNSV"
     gene            complement(2066..2809)
                     /locus_tag="VF788_09370"
     CDS             complement(2066..2809)
                     /locus_tag="VF788_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019816327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934386.1"
                     /translation="MTEAVGPVAVGNGGHGIPLVAGAALALVFDAMTRLRRGKPIHSH
                     GVVAQAIVKRTGSTHRRWGVPWLDEPGTDVGIVRFSRAAGLPWAVPDVLGLALRLEVA
                     GAQHDLLLATTGMRPGWRHVLCPRRHALRAPYGSLLPYDAAGRRVLIAAVPEADAPYG
                     ISDADVARALAPASRTFQLMVATLLGNWTPFAQLTVTPDDNVSDVPVAFDPVLNPLPG
                     LPLGQPFRSLREPAYRAARRARRHQAGGA"
     gene            complement(2853..3746)
                     /locus_tag="VF788_09375"
     CDS             complement(2853..3746)
                     /locus_tag="VF788_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006236397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1990 family protein"
                     /protein_id="HEX8934387.1"
                     /translation="MSSKAHTVGMARKRSRADMDPAAAWRPPMDGRGVLTVRSSNPHE
                     LEIPHWTATLFRWSLGLALVTWRYLWQTTPLHRREEAGDVHDLPPPLPERWVDEGNQL
                     LEQGAGPLFHRVFAICIDEPTMTAQELILLLAADLNHAVPSEVTSVDKQSDCSDPLAV
                     GDEMVVRMPGPWDGPVRVVDCTETSFRFATLDDHMEAGQIEFRARPRGRSLQFEIEAW
                     ARPSSPTVNLLYTYLRLAKEIQLNMWVRFCLPTTDIVRGRLRGGVTIHTRVVEERHWR
                     QASTRDLREHGPAQHAEAPAR"
BASE COUNT          737 a         1421 c         1357 g          705 t
ORIGIN      
        1 gtcagctcaa tcttgcggtg gtgaacaacg aactcggtgt cggcggatat cgcgttgctc
       61 accaccgagt cctcccgcag gttcgccatc gcgtctccgc ggtcccgaat atcgtccaca
      121 gtcagctgct gggcacccgg accgggctgg aagacgtaca cgcgggagtc accagcccac
      181 agcacatgac aagcccaacg gtcgccgctc ggctccctgc gttgcagcgc ggccagcgcc
      241 atggtggtcg gcaatgcccg cagcagccgc gatcgcaaac cgctggcggg cgcgttgagc
      301 tccaccagcc gcgcccggag cgccgcctgc accgcccgct gaaggtccgc cgctgctgct
      361 gccccgtcga ggttccactc cgggtccaac agcgccacca tccgctgctc gacgacgtcg
      421 cgggccagcc gcgatgccaa gtacgcgccg gtgcgcgggc cctccgaggt ctcgtacacc
      481 gtgccaccgg ccccgcccat gccgtcgaac acggcgataa ggccgagctc ccgaccgtcg
      541 cgcaggatcg ggtccgagtc ctccccctgg ccggcgatct tttccagatt gaacccgaac
      601 gtcaagccag gcgggctgtc ggcaggtgcc tcggtgggcg gcgctgactg cgcctgcggc
      661 agctccaccg gagccggatc ggttgcgctg aggggttcag cgctgacgcc ggcggctggc
      721 gccccccccg acgcgtcggc gcgctcaggc tccttcagct gcgggctgtc gctcacaccg
      781 agttgccaat ggagtccacg atcgtcccgt agtccacgtc cgacagccct ccgccagctt
      841 gcgacgggtg atgcacgacg ttctcccaca ccccggagat atcgctccag ccgggaccgt
      901 cgggggcgaa caggatcagc cgcttactgc tggcacccat agggccctgc gcgtcctccc
      961 acaagtcggt aagcgcgttg aagtctgcgg gcacccgctt tcgcagctcc gcggagacca
     1021 ccgccggctc cagcgggtgg gccggctgat ctgtccacac cacgatgacc tgtcgccgcc
     1081 ggtcgccgcg ggtcgtccac ggggagttca ctgcgagcgc gaccgcctcc agacccgact
     1141 ccggcgcatc gccgccaccc tctgcgagca gcccattgac gaagtcgctg aattcgccct
     1201 gctcagcggg gaggtggaag aacggcgact cctgcagcgc cgcctccccg tcggcgacga
     1261 agtcccggaa cgcgacgacg cgaacccgca gttcgtcgac gttcttgccc ttggcggtga
     1321 gattggtctg cacgtcatcg tagaagcgca acgcgttcgc cttcacagcg tcgatgatcg
     1381 gagtcatgct gcccgtgaca tcgatgcaga acacgatgtc cacggcgtag ctcaacccgc
     1441 gtggggcggc cgttggcgca gcgaggctgg actgcccggc accagccgcc ggcgcggctg
     1501 ctgcaggttc actcgctgcc ggatccgcca gcgcgatcgg tgaagactcc tgaacgggag
     1561 tcaccgaatc agccggagca gccgcatcag gaactgcact tgtcgagtcg tgtccagcgg
     1621 tatccggcat tcttcctcca agggggtggc gaggcgcggc gagagcacgc tagctacctg
     1681 gggtaccccc atcgccccag cgacaaaaca tgacaccgtt gcgttagcgg atgactgctc
     1741 gggagcaggc tgtgccgatg cgccgtcgcg acgttcgggt gtcaccgcca cggtcaggct
     1801 tcgcgagctt ccgcttcccg ccagacgtga tcacggcggc ggtgcgatga atgagaccat
     1861 gacggggcca gttccctctg gaggaatcat gcagcggggg ctcgcatgcc ctgttgtggt
     1921 ttcagacgta cctaaggggg cttgcgcctc gacgatctcg gcggtaacgc gccgtacaat
     1981 ggcgcgttac cggcgaccgc gaacatgact cgaggggcga cgacgcgtcc ctccaccctg
     2041 cccgagcccc tcattcgtca acggatcagg ccccaccagc ctggtgtcgc cgcgctcgcc
     2101 gggcggcgcg gtacgccggt tcccgtaggg aacggaacgg ttgcccgagc gggaggcccg
     2161 gcaacgggtt gagcaccggg tcgaaggcga ccggcacgtc ggacacgttg tcgtcagggg
     2221 tcaccgtcaa ctgcgcgaac ggcgtccagt tgccgaggag cgtcgcgacc atcagctgga
     2281 acgtgcggct ggcaggtgca agtgccctgg ccacgtcggc atcgctgatg ccgtatggcg
     2341 cgtcggcctc cgggaccgcg gcgatgagca ccctgcggcc agcggcgtcg tacggcagca
     2401 gagacccgta cggcgcccgc agcgcgtgcc gtcggggaca caacacgtgc cgccagcccg
     2461 gacgcatgcc cgtcgtagcg agcaacaggt cgtgctgggc accggccacc tcgagccgca
     2521 acgcgagacc gagcacgtcc ggtaccgccc aagggagccc agcagcgcga gagaaacgta
     2581 caatcccgac atcggtcccc ggttcgtcga gccacggaac gccccagcgt cggtgcgtgg
     2641 atcccgttcg cttgacaatg gcttgggcca cgactccatg cgagtggatc ggcttgccgc
     2701 gacgcagtcg cgtcatggcg tcgaagacga gtgcaagtgc cgccccagcg acgagcggta
     2761 tgccgtgtcc tccgttgccg accgcgacgg gcccgactgc ctcagtcaca ggtcggccac
     2821 cttgcctctt gctggcgcag gtctttgcgt gctcatcgag cgggcgcctc agcgtgctgc
     2881 gccggcccgt gctctcgcag gtcccgggtc gatgcttggc gccagtgccg ctcctcaacc
     2941 acccgggtat ggatggtaac gccacctcga agccgcccgc gcacgatgtc agtggttggc
     3001 aggcagaacc gcacccacat gttcagctgt atctccttag ccagtcgtag gtacgtataa
     3061 agcagattga cggttggact actcggtcgg gcccacgcct caatctcgaa ttgcagcgat
     3121 ctgcctcgtg gccgggctcg gaactcgatc tgccctgctt ccatgtggtc atccagagtg
     3181 gcgaaacgaa atgacgtttc ggtgcagtca accacccgga ccggcccatc ccaggggcca
     3241 ggcatccgca caaccatttc gtcaccgacg gcgaggggat cggagcaatc ggactgcttg
     3301 tctacggagg taacctcgga gggcacagcg tggttgagat ccgcagccag gagcaaaatc
     3361 aactcctgcg ccgtcatggt gggctcgtcg atgcatatcg cgaacacccg gtgaaacagc
     3421 gggccggcac cctgttccag gagctggtta ccctcatcga cccaacgctc gggcaggggc
     3481 ggaggtagat catgcacatc gccggcctcc tctcgccggt gcagcggcgt ggtctgccat
     3541 aggtaacgcc acgtcaccag cgcgagcccc aacgaccacc gaaatagggt ggcggtccag
     3601 tgcggtatct ccagttcatg aggattggaa gatcgcaccg tcagcacacc acgcccgtcc
     3661 atgggaggcc gccaagcagc ggcggggtcc atgtcggccc ggctcctctt tctcgccatg
     3721 cctaccgtgt gggctttgct gctcatggtg agctgccgct tcattgggtc cttcgttgag
     3781 actatgtcgc gtgctatgca gtggaactgt tccatagcag gtgatgcggc gaaacgtgtc
     3841 gtggccgagt ggttgtgacc ggcagtggca tacccgacca tcggtctcac cggggtaggt
     3901 gacgacaact gacaaatgaa ctccgtaagc gggttcaatc aaggtaatca aaactcatga
     3961 tcgggtgatg tgagctgacc atgcaatcgt gattcataca ttaggcgcgg actgatgatg
     4021 tagcaataag tatctcgatg acgaagctca catgccgagg aggtttagtg gccttcttgc
     4081 acaagtcgaa gggcatcctc tcccgtcgaa ggagcaggca gtctctcaag caccttggaa
     4141 accgtaacaa tcggacattc gaaggcagcc ccggtggctt ctgggtgagt aggccgggct
     4201 gggcggccgg gaatcattca
//
LOCUS       DASVXZ010000455         4478 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1009877, whole genome shotgun sequence.
ACCESSION   DASVXZ010000455 DASVXZ010000000
VERSION     DASVXZ010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1009877"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(366..749)
                     /locus_tag="VF788_09380"
     CDS             complement(366..749)
                     /locus_tag="VF788_09380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934388.1"
                     /translation="MSLVLDSGAVTALGRRDRQTAARIAVLRRRGLWPPILPTAVLID
                     SLSGNRMRDAPANRTVGLSLVHPLEEPLARRAAQLRGRARAGSAVEATVVATAELLEA
                     LVITGNPDVLIRLSQRADGVSLLST"
     gene            complement(763..1014)
                     /locus_tag="VF788_09385"
     CDS             complement(763..1014)
                     /locus_tag="VF788_09385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934389.1"
                     /translation="MPRVQIYLPDDLHHAVKELGLPISELSQQAVRVELRRRELAAAA
                     DRYLAELAVELGGPPTADELAAADAWIDAAAVPPARRPG"
     gene            1062..1487
                     /locus_tag="VF788_09390"
     CDS             1062..1487
                     /locus_tag="VF788_09390"
                     /inference="COORDINATES: protein motif:HMM:NF022216.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX8934390.1"
                     /translation="MNVTDSATVTFRVPLTALLGVFGLIVCMTPVAFGAPGLQLLYLL
                     PLILAFWVVRTRTVVGSETLTTYRIWGTRRIAWSNLVGLRVDDRSRIWAVLHRGDEVR
                     LPAVRARHLPVLAAISGGRLPAPLAEAGEEPAPEGTGQP"
     gene            1843..2370
                     /locus_tag="VF788_09395"
     CDS             1843..2370
                     /locus_tag="VF788_09395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX8934391.1"
                     /translation="MATCLEPISALVVLPGSTPVALAAERTTGRILQVQRQRPNKELA
                     ALTVDPAGDGGLTGLALSPSYAEDELIYAYITTPIDNRVVRIAPGDMPKPVLAGIPRG
                     ITGNAGALAVDSYGMLLVATGDAGIRRRPRIPSRWPARCCGSTPLATPRRATPPGPRC
                     WSAGCTRRVGSVSTR"
     gene            2322..2759
                     /locus_tag="VF788_09400"
     CDS             2322..2759
                     /locus_tag="VF788_09400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934392.1"
                     /translation="MVSGLHAPGGVCVDPLTKELWITDRVPDHDLLHRVKPGRPLGSA
                     AWTWPGGSGAAGCVVMMGRIQVAFTSGTPMFALGIGPGGTFLGPPLQIPLERYGRVSA
                     AALSPDSRVLWLGTVNKTGPTRISSDDRVFVLPDLIGPGGGHD"
     gene            complement(2856..4364)
                     /gene="gatB"
                     /locus_tag="VF788_09405"
     CDS             complement(2856..4364)
                     /gene="gatB"
                     /locus_tag="VF788_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEX8934393.1"
                     /translation="MSTAPAALMDYREVLERFEPVLGLEVHVELSTVTKMFCGCVNAF
                     GAPPNTQVCPTCLGLPGSLPVLNRVAVESAMRIGLALNCSIAPWCRFARKNYFYPDMP
                     KNFQTSQYDEPIAVHGSLDVQLADGSTFTVGIERAHMEEDTGKSLHVGGATGRIHGAS
                     HSLLDYNRAGVPLIEIVTKPIEGAGARAPEIARAYVTALRDLLRALGVSDVRMDQGSL
                     RCDANVSLMPRGSSTFGTRTETKNVNSLRSVERAVRFEMCRQAAALARGDVIVQETRH
                     FDEASGTTSPGRRKETSEDYRYFPEPDLLPIAPSDEWVQRLRSTLPELPWQRRTRVQA
                     EWGLSDPELRDLINAGALELIVATVDAGAPPDEARSWWVAYLTQHANSRGVELPELPI
                     TPKQVARVIALVGEGTLTSTLARQVVDGILAGEGEPDDIVVTRGLAVVSDDSALAAAI
                     EQALAAQPDVAAKIRGGKAAAAGAIVGAVMRATGGQADAKRVRELVLTLVKE"
BASE COUNT          707 a         1544 c         1498 g          729 t
ORIGIN      
        1 cccagtgcct ccagagaacg gacgagggcc tgggcaccgg tgactcgtac cggcgcgccc
       61 accggtgggg ccggcttggg cggctgcgcc ggatgcggga tttctctgga caagtctctc
      121 ggggtcacaa ttgtcatggt cctgccttat tcatcgcttg ctcggccccg aacatcaaaa
      181 aaccctcgcc gcccggttgg gctcaagcga gggtcggcgc gtcgacgtct gtgattcttc
      241 agacgacgcg cctctgacgt acgaggagag tggggatcag cacgtcgccg acggtaacgg
      301 gctcgcccgg acaccgtcaa cctcgccgga gctcctcccg cattttgaga gctccagtcg
      361 gccagtcagg tggacaacag cgagactccg tcggcgcgct gggacaggcg tatgaggaca
      421 tcaggattgc ctgtgatcac cagtgcctcg agcaactccg cggtagccac cacggtggcc
      481 tcgaccgcgg aaccggcgcg cgcccgaccg cggagctgcg cggcgcgacg ggccagcggt
      541 tcctccaggg gatgaacgag ggaaagacct accgtgcggt tcgccggtgc gtcacgcatc
      601 cggttgccgc tcagcgagtc gataaggacg gcggtgggca gaatgggcgg ccacagccca
      661 cgccgccgca gcacagcgat gcgagcggct gtctgccggt cccgacgacc cagcgcggta
      721 accgcacctg agtcaaggac caggctcatc tgcgtcgtct catcatccgg ggcgtcgggc
      781 cggcggaacg gccgcagcgt caatccacgc atcggccgct gccagctcat cagccgtagg
      841 tggcccgccg agttccactg cgagctcagc caggtaccga tccgccgcag cggccagttc
      901 tcgccggcga agctctaccc gtacggcctg ctggctgagc tccgaaatcg gcagtcctaa
      961 ctccttgacc gcatggtgga gatcatctgg cagatagatc tgaacccgtg gcatgcgcct
     1021 actgtacgtc tattgggcca gcgactgtag cccgtcacta tatgaatgtg accgactccg
     1081 ccacggtgac tttccgggtg ccgctgaccg cgctgctcgg cgtgttcggc ctgatcgtgt
     1141 gcatgacacc ggtggccttc ggcgctccgg gactgcagct gctctacctg ctgccattga
     1201 tcctcgcgtt ctgggtggtc cgcacccgca ccgtagtcgg ctccgagact ctgaccacct
     1261 accgaatatg gggcacccgg cggattgcct ggtccaatct cgtggggctc cgggtggatg
     1321 atcgatcccg gatttgggcc gtgctgcata ggggcgatga ggtgcggtta cccgcggtgc
     1381 gcgcccggca ccttccggta ttagcggcga tcagcggagg gcggctgccc gctcccttgg
     1441 ccgaagccgg cgaggaaccg gcacccgagg ggaccgggca gccgtgacgt acccgcgcta
     1501 aaagaccggg ttcaccatcg gcacaccggt cagcccctac cctggccgac cgtgcgctct
     1561 cccgtgccgg gaccgcccgg gcctgcggtc gacttccgct tgcgtggacg gtgccgcacg
     1621 ctctgggtac tgctcacggc ggctgtgctg ctgtgcgcgt gttcgatgac gccgactttt
     1681 ccggaccggg gcaccgcacc ttttcacccc aaactcgagg ttgggtccga ggccggaccg
     1741 aggcccgaga tcccagcgcc gtccagggcg ccgagcccag gcgcacccgg gaggccaccc
     1801 ccgggcccgc cacagggctg cgccgatccg gatccgcagg tcgtggcaac atgcctggaa
     1861 ccgatctccg cgctggtcgt gctgccgggc tccacgcccg tggcgctggc cgcggagcgc
     1921 accaccggcc ggatcttgca ggtccagcgg caacggccga acaaggagtt ggccgccctc
     1981 accgtcgacc ctgccggcga cggcggcctc acgggcctcg cgttgtctcc cagctatgcc
     2041 gaagacgagc tgatctacgc ctacatcacc acgcccatcg acaaccgggt agtccggatc
     2101 gcccctggcg acatgcccaa gccggtgctg gccgggatcc cacggggtat caccggaaat
     2161 gccggcgcgc tcgcggtgga ctcctacggg atgctcctgg tcgccactgg cgacgccgga
     2221 atccggcggc ggccgcggat ccccagtcgc tggccggcaa ggtgttgcgg atcgacacct
     2281 ttggccaccc cgcgccgggc aaccccaccg ggtccaaggt gttggtcagc gggctgcacg
     2341 cgccgggtgg ggtctgtgtc gacccgctga ccaaagagct ttggatcacc gaccgggtgc
     2401 ccgatcacga cctgctgcac cgggtcaaac cggggcgtcc gttgggcagc gccgcctgga
     2461 cctggcctgg aggcagcggt gctgcgggat gcgtagtcat gatgggtcgc atccaggtcg
     2521 cgttcaccag tgggacgccg atgttcgcgc tagggatcgg accggggggc acgttcctcg
     2581 ggccgcccct gcagatcccg ctggagcgct acggccgggt ctccgcggca gccctgagcc
     2641 cggattcgcg ggtgttgtgg ctgggcacgg tcaacaagac gggaccgacc cggatttcca
     2701 gcgacgaccg cgtcttcgtc ctccccgatc tgataggccc cggcggaggc cacgactaat
     2761 ccggtatgtc acgtccctgt gcccggtgtg tcgcggcccc aggcaccacg gcccgcgatc
     2821 cgtacgtcga tgcaggccgc ggaccgctat atccctcatt ccttcacgag tgtgagtacc
     2881 agctcacgca cacgtttggc gtcagcctgg ccaccggtgg ctctcatcac ggccccgacg
     2941 atcgcaccag cggctgcggc cttgccgccg cggatctttg ctgcgacatc cggttgtgcc
     3001 gcgagggcct gctcgatggc ggccgccaac gcggagtcgt ccgagaccac ggccaggcca
     3061 cgggtgacga cgatgtcgtc cggctcgccc tcaccggcga ggatcccgtc gacgacttgg
     3121 cgggccaggg tactggtcag cgtgccttca ccgaccagcg cgatcacccg ggccacctgt
     3181 ttcggggtga tgggcagttc cggcagctcc acaccgcggg agttggcgtg ttgggtgaga
     3241 taggcgaccc accaggatcg cgcctcgtcg ggcggtgctc ccgcgtcaac ggtggccacg
     3301 atgagctcca gcgcaccggc gttgatcaga tcgcgcaatt cgggatcgga cagaccccac
     3361 tcggcctgca cccgggtccg gcgctgccag ggcagctcgg gaagcgtgga ccgcagccgc
     3421 tgcacccact catcgctggg cgcgatgggt agcaggtctg gctccgggaa ataccggtaa
     3481 tcctctgagg tctccttccg tcgcccgggc gatgtggtgc cgctggcctc gtcaaaatgc
     3541 cgggtttcct gcacgatgac atcaccacga gccaacgctg cggcctgccg gcacatctcg
     3601 aagcgcacgg cgcgctccac cgaacgcagc gagttgacgt tcttggtctc ggtccgggta
     3661 ccgaaggtgg aagaaccccg cggcatcaag gagacgttgg cgtcgcagcg cagcgacccc
     3721 tggtccatcc gcacatcgga gacaccaagc gcccgcagca ggtcgcgaag cgcggtgacg
     3781 taggcccggg cgatctcagg cgcgcgggcg ccggcacctt caatcggctt ggtcacgatc
     3841 tcgatcagcg gaacgccggc gcggttgtag tcgagcaagg agtggctcgc gccgtggata
     3901 cgaccggttg caccgccgac gtgcagcgac ttgccggtgt cctcctccat gtgtgcgcgc
     3961 tcgatgccga cggtgaacgt cgagccgtcg gccagttgca cgtccagcga gccgtgcacc
     4021 gcgatcggct cgtcgtactg ggaggtctgg aagtttttgg gcatgtcggg gtagaagtag
     4081 tttttccggg cgaaccggca ccacggcgcg atcgagcagt tcagcgccag cccgattcgc
     4141 atcgccgact ccaccgcgac gcggttgagc accggcagcg atcctggtaa ccccaggcat
     4201 gtcgggcaga cctgggtgtt gggcggggct ccgaacgcgt tgacgcagcc gcagaacatc
     4261 ttggtcacgg tggagagctc gacgtgcact tcgagcccga gcaccggctc gaaacgttcc
     4321 agcacctcgc ggtagtccat cagtgcagcc ggggcagtgc tcatcgggct gctacctcca
     4381 aatcaggcac ccgacacgac agcgggccac catcggcagc attacgggcc aactcgtagg
     4441 ccgccgccac ccggtaggcc cgatcgtcag ccaaggtg
//
LOCUS       DASVXZ010000456         4740 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_138601, whole genome shotgun sequence.
ACCESSION   DASVXZ010000456 DASVXZ010000000
VERSION     DASVXZ010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4740
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138601"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>4740
                     /locus_tag="VF788_09410"
     CDS             <1..>4740
                     /locus_tag="VF788_09410"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8934394.1"
                     /translation="ARRPFRDYLHWLTEQDQHHATQHWQTVLSGFDSPTPLPYDRPPH
                     QAHRSQSTEFVQLHLDAQDTTRLQHTAKHHGLTVNTLVQGAWALLLARYSGQPDVVFG
                     TTVAGRPAELAGVESMIGMFINTVPTRAHITETQDVTSWLRELQNAQIESRRYDFLSL
                     TQIHSHSDLPPGTTLFDTILIFENYPFDSTALTDAGLGIHDAHLRETTNYPLALQAFL
                     GEQLNLRLAYDSHLFDTTTIHRMIGHLHVLLKAISSYPDQPLADLPLLTHDEHRQLIV
                     DWNDTHTPIPAATLPELFTAQVARTPDAVALMVEGEELSYSELEERANRLARVLIGAG
                     VGPEQFVGLALERSVELIVALLAVSKAGGAYVPIDLNHPPARIGFICADANLALVVCT
                     QHSMGCLPESVTRLIIDEPQVIQQIIAQSGDGITDAGRIAPLSAAHPAYAIYTSGSTG
                     APKGVVIQHVSLINFLAAMGEWFPLDDTTRLLAVTTIAFDIAGLELYLPLIRGAAVVL
                     AEGIASDPAALAATITSTGATMMQATPSLWQTIISTHPDEVRGLRMLVGGEALPPALA
                     ATMQELGGEVTNLYGPTETTIWSTAARLDGTGVPTIGTPIANTRVFVLDGRLRPVPVG
                     VVGELYLAGAGLARGYLRRPGLTAARFVANPFGAPGERMYRSGDLVRWSSGGELEYLG
                     RVDEQVKIRGFRIELGEIEAVLATHPGISEVVVVAREDQPGMKRLVAYLVPAGEPAVP
                     VAELRTHLGAALPDYMVPALFVTLDELPLGPTGKLNRNALPTPEGLTAPVAEYVAPRT
                     DTERILADIWVQVLGADQVGIEDNFFELGGDSILSIQVMSRVRVAFEVELSPRALFAN
                     PTVAGLAAAVAESAVVALPALPVADRVGELPLSFAQQRLWFLDQFAPGESAYVIAFAV
                     RLRGELDLDVLSDALNMLISRHESLRTTFETIQGRGVQVVHPPVPVSLPVWDLCALTP
                     SEQQRELERVLAAQISQKFDLTRGPLLRVGVARLNATEHVLSVAMHHIITDAWSLGVL
                     GAELGELYNAILTGRTPELPELAVQYVDYALWQRELLTGAVLDTAMGYWREQLAGLPV
                     LELPTDRPRPVVATSPGALHQFMVPAEVTSRLKELSQRQDSTLFMTLVAACQLLFSRY
                     AGQNDIAVGTVASGRDRAELEGMIGFFVNTLVLRSQIDDEHSFRKFLAQVRETVLDAF
                     VHQQLPFERVVDELAPIRDTSRSPLFQAMVILQNAPGHNPDLTGLDVSDLDLPTTTAQ
                     FDITIQFHETGSALAGAFTYNTDLFDSSTIQRMVGHLLVLLGGIATDPDQLVAELPLL
                     SAAERDRLLVEWNDTHTPLPEATLPELFGAQAARTPDAVALVVRGDEFTYAELDERSN
                     RLAHWLIAREVGPEQFVGLALERSVELVVALLAVSKAGAAYLPIDVNHPPARIDFICA
                     DAHPVIVLCSERSAGCLPTDVARLVIDDPGTVQEIEACSGAEVTDGQRVRPLCPSHSA
                     YAIYTSGSTGRPKGVVVAHRSVVDLVGWATAEFGVSGLSRVVASTSLTFDVSVFEIFC
                     PLLMGGSIELVRDVLTLGEPGALRVAS"
BASE COUNT          793 a         1522 c         1506 g          919 t
ORIGIN      
        1 ggcccgccgc ccgttccggg attacctgca ctggttgacc gagcaagacc agcaccatgc
       61 cacccagcac tggcagacgg tgctctccgg gttcgactca cccaccccct tgccctatga
      121 ccggccgccc caccaagcgc accgctcaca atccaccgaa tttgtccaac tccatctcga
      181 cgcccaagac accacccggc tccagcacac cgccaaacac cacggcctga ccgtgaacac
      241 cctggtacaa ggcgcctggg cgctgctgct ggcccgctac agcggccaac cggatgtggt
      301 gttcggaacc accgtcgccg gacgtcccgc cgaactggcc ggggtggaat ccatgatcgg
      361 catgttcatc aacaccgtgc ccacccgcgc tcacatcacc gagacccaag acgtcacctc
      421 ttggctccgc gagctacaaa acgcgcaaat cgaatcccgc cgctacgact tcctgtccct
      481 cacccagatc cacagccaca gcgacctgcc ccccggcacc accctgttcg acaccattct
      541 gatcttcgag aactacccct tcgactccac cgccctcacc gacgccggcc tgggcatcca
      601 cgacgcccac ctccgagaga ccaccaacta cccgctcgcc ctgcaagcct tcctcggcga
      661 gcagctcaac ctgcgcttgg cctacgactc ccacctgttc gacaccacca ccatccatcg
      721 gatgatcggg cacctccacg tcctgctcaa ggccatctcc agctaccccg accagccact
      781 agccgatctt ccgctgctca cccacgacga gcaccgccaa ctcatcgtgg actggaacga
      841 cacccacacc cccataccgg cagcaaccct gcccgagctg ttcaccgccc aggtcgcccg
      901 cacccccgac gcggtagccc tcatggtcga gggtgaggag ttgtcctatt ccgagctgga
      961 ggagcgggcg aatcggctgg cgcgggtgct gatcggcgct ggagtaggcc cagaacagtt
     1021 cgtcgggctg gccctggaac ggtccgtgga actcatcgtg gcgttgctcg cggtgagcaa
     1081 ggcgggtggc gcgtatgtgc cgatcgatct gaaccatcca cccgcacgga tcgggttcat
     1141 ctgtgccgat gccaacctgg ccctcgtggt gtgcacccag cacagcatgg gatgcctacc
     1201 cgagagcgtg accaggctga tcatcgatga gccccaggtg atccagcaga tcatcgccca
     1261 gtccggtgat gggatcaccg acgccggccg gatagctccg ctttctgctg ctcaccccgc
     1321 gtatgcgatc tacacgtcgg gatcgacggg ggctccgaag ggtgtggtga tccagcacgt
     1381 atcactgatc aacttcctcg ctgcgatggg cgagtggttc ccgctggacg acactacccg
     1441 gctgctggcg gttaccacta tcgcgttcga catcgcgggg ttggaactgt atctaccgct
     1501 gatccgtggc gcagccgtgg tgctggccga aggcatcgcg tcggatccgg cagcgctggc
     1561 agcgacgatc accagcactg gtgccaccat gatgcaggcg accccgtcgc tgtggcagac
     1621 gatcatctcg acccatcccg acgaggtgcg tgggttgcgc atgctggtcg gcggggaggc
     1681 actgcccccc gcgctcgccg ccaccatgca ggagctgggc ggcgaggtca ccaacctcta
     1741 cgggcccacc gagaccacga tctggtccac cgcggcccga ctcgacggca ctggtgtgcc
     1801 caccatcggc accccgatcg cgaatactcg ggtgtttgtg ctggacggcc ggttgcgacc
     1861 ggtgccggtc ggagtcgtgg gagagttgta tctcgcgggg gctggtctgg cgcggggtta
     1921 tctgcgccgc ccagggctga ccgcggcccg ctttgtggcc aacccgttcg gcgcgccggg
     1981 tgagcggatg tatcgcagcg gggatctggt gcgctggagc tccggtgggg agttggagta
     2041 tctcggtcgg gttgatgagc aggtgaagat ccggggcttc cggatcgagc tcggggagat
     2101 cgaggcggtg ctggccaccc accccggcat cagcgaggtc gtggtcgtgg cccgggagga
     2161 ccagcccggg atgaaacgcc tggtggccta cctggtcccg gccggagaac cggctgtccc
     2221 ggtcgcggag ttgcggaccc atctgggtgc ggcgttgccg gattatatgg ttccggcgtt
     2281 attcgtgaca ctcgatgagc tgcctttggg accgaccggg aaactgaacc gcaatgcatt
     2341 acccaccccg gaggggctca ccgcgccggt agccgagtat gtcgccccgc ggactgacac
     2401 cgagcgcatt ctggctgaca tttgggtgca agttctggga gccgaccagg ttggcatcga
     2461 agacaatttc ttcgagttgg gtggggactc catcctgagt attcaggtga tgtcacgggt
     2521 gcgagtagcg ttcgaggtgg aactctcccc gcgcgcgttg ttcgcgaatc ccacggtggc
     2581 cggcttggcg gcggcggtag cagaatcggc ggtcgtcgcg ttgcccgcgc tcccagtggc
     2641 cgatcgggtg ggcgaattgc cgttgtcgtt cgcgcagcaa cggttgtggt tcctggatca
     2701 gttcgcccca ggtgagtcgg cctatgtcat cgcgttcgcg gtgcgcttgc gcggcgagct
     2761 ggatctggac gtgctctcgg atgccctgaa catgctgatc tcccgacacg agtcgctgcg
     2821 caccacgttc gagaccatcc agggacgggg agtgcaggtg gtgcatccac ccgtgccggt
     2881 gtccctgccg gtatgggacc tctgcgcgct gaccccgtcc gagcagcagc gggaactgga
     2941 acgagtgctg gccgcacaga tcagccagaa attcgatctg acccgcggac cgctgctgcg
     3001 ggtaggtgta gcacgcctga acgccaccga acacgtgctc agtgtggcga tgcaccacat
     3061 cattaccgat gcctggtcac tcggtgtgct gggtgctgag ctgggtgagc tctacaacgc
     3121 catcctcacc ggccggacgc ccgagttgcc ggagctggcg gtgcaatacg tcgattacgc
     3181 tctctggcag cgggagctgc tcaccggcgc ggtgctggac accgcgatgg gctactggcg
     3241 cgaacaactg gctggcttgc cggtcttgga attgcccact gaccggcccc gccccgtggt
     3301 cgcgacctcc cctggcgcac tccaccagtt catggtgccc gccgaggtca ccagccggct
     3361 caaagaactc agccaacgcc aggacagcac tctgttcatg actttggtcg ccgcctgtca
     3421 gctgctgttc agccgctacg cggggcagaa cgacatcgcg gtgggcaccg tggcatcggg
     3481 ccgggaccgg gccgagctgg aaggaatgat cggctttttc gtcaacaccc tcgtcctgcg
     3541 ctcccagatt gatgacgaac acagtttcag gaagttcctc gcccaagtcc gcgaaaccgt
     3601 actggacgca ttcgtccacc aacaactgcc cttcgagcgc gtcgtcgacg agctcgcccc
     3661 aatccgggac accagtcgca gcccgctgtt ccaggccatg gttatcctac aaaacgcccc
     3721 cgggcacaac cccgacctga ccggcctcga tgtttccgat ctggacctcc ccaccaccac
     3781 tgcccaattc gacatcacta tccaattcca tgaaaccggc agtgcactgg ccggtgcatt
     3841 cacctacaac accgacctct ttgacagcag caccatccag cggatggtgg gacatttgtt
     3901 ggtgttactg ggtggtattg cgactgatcc tgatcagctg gtggcggagc tcccgttgtt
     3961 gagtgccgcg gagcgggatc ggttgttggt ggagtggaac gacacccata ctccattgcc
     4021 tgaggcgacg cttccggaat tgtttggtgc gcaggccgcc cggacgccgg atgcggttgc
     4081 tttggtggtg cggggtgatg agtttactta tgcggagttg gatgaacggt cgaaccggtt
     4141 ggcgcattgg ttgatcgctc gggaggtcgg tccggagcag ttcgtggggt tggctctgga
     4201 gcggtcggtg gagcttgtcg tggctctgct cgcggtgagt aaggccggtg cagcatattt
     4261 gccgattgat gtgaatcatc caccggcacg gattgatttt atctgtgctg atgcccaccc
     4321 ggttattgtc ttgtgctctg agcgcagcgc ggggtgcttg cctacggatg tggcccggtt
     4381 ggtgattgat gatcccggga ctgtgcagga gatcgaggcg tgttctggtg ctgaggtcac
     4441 cgatgggcag cgggtgcgac cgttgtgtcc cagccattcg gcgtatgcga tttatacgtc
     4501 agggtcaacg gggcgtccca agggcgtagt ggttgctcat cgaagtgtgg tggatttggt
     4561 ggggtgggcg accgcggagt tcggtgtatc agggttgtcg agggtggtgg cttcgacttc
     4621 gttgactttc gatgtgtcgg tgtttgagat tttctgcccg ctgctgatgg ggggcagtat
     4681 tgaattggtg cgggatgttc tgaccttggg cgagcccggg gcgctgcggg tggcgagctt
//
LOCUS       DASVXZ010000457         2357 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_407638, whole genome shotgun sequence.
ACCESSION   DASVXZ010000457 DASVXZ010000000
VERSION     DASVXZ010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407638"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /locus_tag="VF788_09415"
     CDS             complement(<1..554)
                     /locus_tag="VF788_09415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEX8934395.1"
                     /translation="MPVSNTSDIQAVGERVEALLAEFASASDPAIAGRAEELVGLLVD
                     FYGAGLARILELLDEQAAAPLLADKAVAGLLVLHDLHPQSTEERVLAALDRVRPYLGS
                     HAGGVEYLGLDDDGTVRLRLAGSCDGCPSSAMTVKMAIEKGIEDVAPEVTKVEVEGMV
                     SDPASRLSASSPEGRPLLPLAQVS"
     gene            complement(557..2308)
                     /locus_tag="VF788_09420"
     CDS             complement(557..2308)
                     /locus_tag="VF788_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEX8934396.1"
                     /translation="MAWDPITRIVGSLGIYTKIDFKQREVVECRSTSSIFRGYSIFMK
                     GKDPRDAHFITSRICGICGDNHATCSVYNQNMAYGVAPPHLGEWVINLGEAAEYMFDH
                     NIFQENLVGVDYCEKMVAETNPGVLEQANRTAAPQEAAHGYKTIGDIMRALNPLSGEF
                     YREALQVSRYTREMFCLMEGRHVHPSTLYPGGIGCVATHQLFTDYYTRLMRYVEFMKR
                     VVPLHDDLFNFFYDAIPGYEEVGRRRVLLGCWGAQNDPEHCDFNYRNMTNWGRKMFVT
                     PGVVVDGKLVTNDLVKINLGLRILLGSSFYEDWDGMETFADKDPLGNPVDRRHPWNQH
                     TIPRPAKRDFNGPYSWTMSPRWFDGKDHLALDTGGGPLARLWPTALSGLVDTGFVKAT
                     GKSVVINLPRTMTKPEVTFEWKIPYDKAGKPLSNALERNRARSYFQAYQAAMGLHFVE
                     KALAEVRAGRTKTWEPFKVPKEAISCGWTEAVRGVLSHHMIIQDGKIANYHPYPPTPW
                     NGSVRDIYGTPGPYEDAVQNTPIFEENPPENFKGIDIMRAVRSFDPCLPCGVHMYLGD
                     GHELDRLHTPHSFPAGG"
BASE COUNT          401 a          754 c          770 g          432 t
ORIGIN      
        1 ttactcacct gggccagggg cagtaagggc cgtccctccg gcgagctcgc ggacagccgc
       61 gaggccggat cggacaccat gccctctacc tctaccttgg tgacctcggg tgcgacgtcc
      121 tcaattccct tctcaatggc catcttcacg gtcatcgcgg aggacgggca gccgtcacag
      181 ctgcccgcca accgcaatcg gaccgtgccg tcgtcgtcga gcccgaggta ctcgacgccg
      241 ccggcatgcg aaccaaggta gggccggacc cgatccaaag cagcgaggac gcgttcctcg
      301 gtgctctgtg ggtgcaggtc gtgcagcacc agcaggccgg ccactgcctt gtcagcgagc
      361 agcggagcag cggcctgctc gtcgagtagc tccaggatgc gggccaggcc cgcaccgtag
      421 aagtcgacga gcagaccgac tagctcctcg gctcgcccgg cgatcgcggg gtcggaggcc
      481 gaggcgaact cagcgagtag cgcctcgact ctttccccaa ccgcctggat atccgatgtg
      541 ttgctaacag gcacgatcag ccgcccgccg ggaatgagtg tggcgtgtgc aggcggtcca
      601 gctcgtgacc atcaccgagg tacatgtgca caccacaggg caggcacggg tcgaagctgc
      661 gcaccgcccg catgatgtcg atgcccttga agttctccgg tgggttctcc tcgaagatcg
      721 gcgtgttctg cacggcgtct tcgtaggggc ccggcgtccc gtagatgtcg cggacgctgc
      781 cgttccacgg ggtgggcggg tacgggtggt agttggcgat cttaccgtcc tggatgatca
      841 tgtggtgcga cagcacaccg cggaccgcct cggtccaccc acagctgatt gcttccttgg
      901 gcaccttgaa cggctcccag gtcttggtgc ggccagcccg cacctcggcc aaggccttct
      961 ccacgaagtg cagccccatc gcggcctggt aagcctggaa gtagctccga gcccggttgc
     1021 gctcgagcgc gttcgacaac ggcttgccag ccttgtcgta cgggatcttc cactcgaagg
     1081 tgacctcggg cttcgtcatc gtccttggca ggttgatgac gacgctctta ccggtggcct
     1141 tgacgaagcc ggtgtcgacc aggccagaca gcgccgtcgg ccacaaccgg gccagcggtc
     1201 caccaccggt gtccagagca aggtggtcct tgccgtcgaa ccaccgcggc gacatcgtcc
     1261 agctgtacgg gccattgaag tcccgcttgg ccggccgcgg gatggtgtgc tggttccacg
     1321 ggtgccgacg gtccaccggg ttacccaacg gatccttgtc ggcaaaggtc tccatgccgt
     1381 cccagtcctc gtagaacgaa gagccgagca ggatccgcaa cccgaggttg atcttcacca
     1441 ggtcgttggt gaccagctta ccgtccacga ccacaccggg ggtgacgaac atcttgcgac
     1501 cccagttggt catgttgcgg tagttgaagt cgcagtgctc cgggtcgttc tgagcgcccc
     1561 agcaacctag cagcacgcgg cgccggccca cttcctcgta gccgggaatg gcgtcgtaga
     1621 agaagttgaa caggtcgtcg tgcagcggca cgacccgctt catgaactcg acgtaccgca
     1681 tgaggcgggt gtagtagtcg gtgaacagct ggtgggtggc cacacagccg ataccacccg
     1741 ggtacagcgt ggaggggtgc acgtggcgac cctccatgag gcagaacatc tcgcgcgtgt
     1801 agcgggagac ctgcagtgcc tcgcggtaga actcacccga gagcgggttg agtgcccgca
     1861 tgatgtcgcc gatggtcttg tacccgtgag ctgcttcctg gggcgccgca gtgcggttgg
     1921 cctgctcgag cacgccgggg ttggtctcgg cgaccatctt ctcgcagtag tcgaccccaa
     1981 ccaggttctc ctggaagatg ttgtggtcga acatgtactc ggcggcttca cccaggttga
     2041 tgacccattc accgaggtgc ggcggggcca ccccgtaggc catgttctgg ttgtacaccg
     2101 agcatgtggc gtggttgtcg ccgcagatcc cacagatacg gcttgtgatg aagtgggcgt
     2161 cgcgcgggtc cttgcccttc atgaagatcg agtagccgcg gaagatcgac gacgtgctgc
     2221 ggcactcgac cacctcacgc tgcttgaaat cgatcttcgt gtagatcccc agactgccga
     2281 cgatgcgggt gatggggtcc caggccatct cgaccaggtc gccggcggac gagcgatggg
     2341 tggggccgga ccgcgtc
//
LOCUS       DASVXZ010000458         8398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1572723, whole genome shotgun sequence.
ACCESSION   DASVXZ010000458 DASVXZ010000000
VERSION     DASVXZ010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8398
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1572723"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1344
                     /gene="tmk"
                     /locus_tag="VF788_09425"
     CDS             <1..1344
                     /gene="tmk"
                     /locus_tag="VF788_09425"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEX8934397.1"
                     /translation="QLRDAGVTAFRFVDDLFLGARRVIKEMMDAFVAERVGEWARWDA
                     TGRINVLHRASDPMLDSLAGNGLREVALGIESGSERVLRLIDKRIDPFMTRTAVRRLT
                     ERGINVKGYFILGLPTETREEIDATVRLVHELWSLTDPLAGQFRASVFEYRPYPGTPD
                     WHRLMATGHYTPDQLLDYSAIDLTDNGFDETMRDRDEFNFSVNLQLCDAAGLCAYPTR
                     GSDPRAIHSQPQHVSTMATGHRGVFVTIDGPGGAGKTTTVQTLHRHLCAIGYIVHATT
                     EPSHAILGQIARHHTDTYTGHALACLVAADRYHHLATDIRPKLASGRIVLCDRYVPSS
                     YVLQRMDGVPLDFIEAVNAAADLPHLGVLLTAEPDTLAGRIERRGAHSRFEQGIISSR
                     IEADLYHQSSAQLSARGYPLLAIDTTHTPPEQVTELIASRISDLAGLPRPETPTA"
     gene            1429..1893
                     /locus_tag="VF788_09430"
     CDS             1429..1893
                     /locus_tag="VF788_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX8934398.1"
                     /translation="MPDRHLIDVHVLLVTEGNVLLTQRRDPHPAFDGLWHLPSGKLDT
                     GESVLDAAAREAEEEVGVLIEAADLRHVHTIHVNGSGPEPRLGLFFHTRHWIGEPTNR
                     EPEKCSAVRWFPLHALPDQLIDYPAQGIRAYCHGTTFSIHGWHASHPVSTHA"
     gene            complement(2899..3534)
                     /gene="folE"
                     /locus_tag="VF788_09435"
     CDS             complement(2899..3534)
                     /gene="folE"
                     /locus_tag="VF788_09435"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEX8934399.1"
                     /translation="MSVEPTGSLPERPAPARHPSLRLVPPRQEVNLPAAQRAVADLLM
                     ALGKDPASEHLSETPRRVARSFAELLTPREFDLTTFPNDEGYDELVLAKSIPVQSLCE
                     HHLLPFHGIAHVGYLPGERILGLSKLARVVELFARDLQVQERLTQQVADALQEHLVPQ
                     GVGVVIEAEHLCMSLRGVRATGSRTVTSALHGVLREDARSRQEFFALTGCQ"
     gene            complement(3663..4097)
                     /locus_tag="VF788_09440"
     CDS             complement(3663..4097)
                     /locus_tag="VF788_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934400.1"
                     /translation="MTAADVSTSSTARSTVWSDPAYQAFLLLRTVFTVAPILFGLDKF
                     ANLLVPWPGYLAPWIDAVVPGTVQQTMYAVGVIEVVAGIAVAAAPRFGAWLVAAWLAG
                     IVVNLLTFPGFFDIALRDFGLLVGAVALARLATCYAPGGRTS"
     gene            4245..4937
                     /locus_tag="VF788_09445"
     CDS             4245..4937
                     /locus_tag="VF788_09445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934401.1"
                     /translation="MERSQQVQISAVAALDEPSRRRLYDYVVRQPEPVSRDEAAEALE
                     LPRSTAAFHLDRLVEEELLGVEYQRRTGRTGPGAGRPAKLYRRSDQHVAVSLPQRRYE
                     LAGQLLSGAIEHAERTGDSPRASLDQRAHQLGKQLGETARNVAGDHDTQDTALEVLEA
                     HGFEPRREGDQVMLTNCPFRTLAQEYTELVCGMNLRLLDGLLEGLAPTGLMAHLDPTP
                     PNCCVRLVKGAS"
     gene            5020..5871
                     /locus_tag="VF788_09450"
     CDS             5020..5871
                     /locus_tag="VF788_09450"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX8934402.1"
                     /translation="MASPHELVRRVERFTALDKLAKPVRGLVGKAVRPRRVRNLLSGT
                     KLGHPAHPMLTDLPIGAWSMSALLDTVGGASAAPAADLLISVGILSAIPTAVTGLNDW
                     SDTIGAETRIGAVHAGANVAALGLYTASLIARRSGRRVRGKVLGLAGLGVLMVGGYLG
                     GHLSYARAVNVNHTAFEHGPQEWTPVLADAELGEGEHRRVTAGEAAVLLARSDGELYA
                     LANTCSHAGGPLDEGELVDGCVVCPWHASTFQLTDGSIVRGPASVPQPTYQTRVRDGK
                     IEVRSIG"
     gene            6193..7374
                     /locus_tag="VF788_09455"
     CDS             6193..7374
                     /locus_tag="VF788_09455"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEX8934403.1"
                     /translation="MDSLIQLRRDIHMHPELARQEFRTTSVVSAALAEAGLVGRVLPS
                     GTGLMVDIGAKSGPLIALRADMDALPIQDDKDVPYRSRIPNVCHACGHDVHTAILVGA
                     AIELARSDLASFGRVRCIFQPAEESSESGSLDMIAAGALDGVNRIFALHCDPSAQVGT
                     VGTRSGPITSAADHMVIKIKGLGGHSARPNLTPNPIIAVCTVVTSLPDAVNAQLPEHE
                     RVLIGFGTISSNGAKNAIPSYAEVSGTVRIPDSAVWAGMPNLIKTAVDNIVQPFELDC
                     DVDYVRVCPAVINDSNATAIIDQAALSVVGRENVYKPPQSFGAEDFSWYLRDVPGAIF
                     RLGVRAHGSATQVDLHSGHFDVDERAIGAGVKMFTRIAIGATRAISSMDKPCEDLRNM
                     E"
     gene            7911..>8398
                     /locus_tag="VF788_09460"
     CDS             7911..>8398
                     /locus_tag="VF788_09460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934404.1"
                     /translation="MSAPTPEELTFQPRIDGNPQSYFNFSTDGLYPITLPASKKEVLV
                     MRDAKTVRLVMTDPRFSLAGLDPNEDTVTGTGYQSPSGMLRQDLPHIRCIRRAIIPFF
                     SEQSIAPWREEVAGIADDLISKLLKGHRLADLNKRYFEPLVVRAVALSAGITKNESDT
                     LY"
BASE COUNT         1610 a         2755 c         2510 g         1523 t
ORIGIN      
        1 cagctgcgcg acgccggcgt gaccgccttc cggttcgtgg atgatctctt cctcggcgcg
       61 cggcgggtca tcaaggagat gatggacgcg ttcgtggccg agcgcgttgg tgagtgggcg
      121 cgctgggatg ccaccggacg aatcaacgtg ctgcaccgtg ccagcgaccc catgctcgac
      181 tcccttgccg gcaacgggct acgggaagtc gccctcggca tcgagtccgg cagcgaacgc
      241 gtgctccggc tgatcgataa acgcattgac cccttcatga cccgcaccgc tgtccgccgc
      301 ttgaccgagc gcgggatcaa tgtcaagggc tacttcatcc tcgggctgcc taccgaaacc
      361 cgggaggaaa ttgatgccac tgtgcggctg gtgcacgagc tgtggagcct caccgatcca
      421 ctcgcgggac agttccgcgc gtcggtgttc gaataccggc cctacccggg gacccctgac
      481 tggcaccgtc tcatggcgac cggccactat acccccgacc aacttctcga ctacagcgcc
      541 attgacctca ccgataatgg gttcgacgag acaatgcgtg accgcgacga gttcaacttc
      601 tcggtcaatc tgcaactctg tgacgccgct ggactatgtg cgtacccaac tcgtggctct
      661 gacccgcgag caatacactc gcagccgcaa cacgtgagca caatggcgac cgggcaccgg
      721 ggagtcttcg ttactatcga tggccccggt ggagcaggaa agaccaccac agtccaaact
      781 ctgcaccgcc acctgtgcgc catcggctac attgtgcacg ccacgaccga gccctcccac
      841 gccatactcg ggcagatcgc gcgccaccac accgacacct ataccgggca cgcgctggcc
      901 tgcctggtcg ccgcggaccg ctaccaccac ctcgccaccg atatccgccc gaagctggcc
      961 tccggccgta tcgtgctctg cgatcgctat gtcccgtcgt cctatgtgct gcaacgcatg
     1021 gacggcgttc ccctggattt catcgaagcc gtcaacgctg ctgccgatct acctcatctc
     1081 ggggtgctgc ttactgccga acccgacacc ttggccggac gcatcgaacg gcgcggcgcg
     1141 catagccgct tcgagcaggg catcataagc agccgcatcg aagccgacct ctaccatcag
     1201 tccagcgctc aactgagcgc tcgcggctac ccgcttctgg ccatcgatac cactcacacc
     1261 ccgccggagc aggtcaccga gctaatcgcc agccgcatca gcgaccttgc gggtctccca
     1321 cgccccgaga cgccgaccgc gtaggctgcg cgccacgcca gatcgctcac gaccgagcca
     1381 agcgacgctt cccaaccgcg cactagattc ctcggcaagg acactcacat gcccgaccgg
     1441 cacctgatcg acgtgcatgt tcttctcgtc actgagggta atgttctact tactcagcgt
     1501 cgagatcccc accctgcctt cgacggactc tggcaccttc cctccggcaa gctagatacc
     1561 ggcgagtccg tgcttgacgc tgccgcgcga gaagcagaag aagaggtcgg cgtgctcatc
     1621 gaggccgccg acctacgcca cgtacacacc atccacgtca acggctcggg acctgagccc
     1681 cggctcggcc tgttcttcca cacgcgacac tggatcggcg aaccgacaaa ccgcgaaccc
     1741 gaaaaatgtt cagccgttcg ctggtttcct ctccacgcat taccagacca gctcattgac
     1801 taccccgccc aaggcatccg cgcctactgc cacggcacaa ccttcagcat ccacggctgg
     1861 cacgcgtccc acccagtctc aacacacgcc taacaagtgt gccgcattcg gcacaccgac
     1921 tggttgagtc gaggagcaga cgattgatcg cctgaccagc ggcgatcgtc gacgggaggg
     1981 ctcaggccgc ccaggtgaca agaagtacgt cgacgcgttg ctcggtctcc aggatgggat
     2041 aggtgagcag gcccaccgcg ccgaaggcca ggtgcgtaca ggaccgtcgg ggttggccgg
     2101 gttctgagga tttccgtttc cgatgatcaa cgacgccgag accgctaggt aaacagagat
     2161 accaccggcc ggaccacctt ccgggtgcag cgatcgcacg cctgccatcg cgtaccagca
     2221 gcgcgatcag cgccgttccg acaagccgtc acccgcgagt cggctgctga ttccgctgag
     2281 atatttgagc acgtcggtga ggatccaggt cgagtcgctg cgcagcatca ccatcagatc
     2341 gttggactcg atccgaaccg ggacgtagaa ggtctgttca ggatcgtgtc gggcggcgga
     2401 tcggcgatca gtgtgtccac cgactcgccc tcgtccggcg cgaacgtcgc gcgccgcagc
     2461 atccttcggg tggctgaggc ctacctcagg tcggtgtccc gtgctaggag gcgggcccgt
     2521 tcgccctgga cccggtgctc tggcgacgac ggcttgagca gaggcctcag gaataaaccc
     2581 acaacctcac cggctccgtg cccgtgccag ataccggcac cctccgctcg atggccgagg
     2641 tctccggccg atccagccag cacccatgac taccatccgg cctcgctgcg gatggcttta
     2701 cgcagctggc cttgttctcc ttgcccggca ggtgtccctt caacagcggg ggccgctcgt
     2761 aggggttgtt cggcttccct ttccgatgag catcagccgg ccggtgaatc cctttcgcgc
     2821 agggttcggg ccaccttcgc tcaggggagg ctggcaccga cgatgaggag cgtctgctcg
     2881 gtggccgtgg gtatgttcct attggcatcc ggtcagggcg aagaattcct gccgcgagcg
     2941 ggcgtcctcc cgcagaacac cgtgcagtgc agaggtcacg gtgcgcgagc cggtggctcg
     3001 aacgcctcgc agcgacatgc acaaatgctc cgcctcgatc accacgccga ccccctgggg
     3061 gaccagatgt tcctggagcg catcggcgac ctgctgggtc aggcgctcct ggacttgcag
     3121 atcccgggca aagagctcaa cgactcgagc cagcttcgac agtccgagga tgcgttcccc
     3181 tggcaggtaa ccgacatggg cgatgccgtg aaagggcagc aggtggtgct cgcacagcga
     3241 ctgcaccggg atgctcttgg cgagcaccaa ctcgtcgtag ccctcgtcgt tcgggaaggt
     3301 cgtcaggtcg aactcccgcg gagtcagcag ctcggcgaag gatcgggcca ctcgccgcgg
     3361 cgtttctgac aggtgttcag aggccgggtc cttgcccagg gccatcagga gatcggccac
     3421 cgcgcgttgc gccgcgggaa ggttcacctc ctgcctgggt gggaccagcc ggaggctggg
     3481 gtggcgcgcg ggtgcaggtc gctcgggaag tgatcccgtt ggctcgacgc tcatcagact
     3541 tgtccttcct cgggggtccc gcatggggag ggcttggagc ggtgacgcgg ccccaagctc
     3601 tccaagggtc tgcattcgtg gtgggcacgg aacgcagact ggtcacggcg ccgcacgccg
     3661 ctctaggacg tgcgccctcc gggtgcgtag cacgtggcta gccgggccag cgctaccgca
     3721 ccgacgagca gcccgaaatc acgcagcgca atgtcgaaga aaccggggaa ggtcagcagg
     3781 ttgacgacga tcccggccag ccaggcggcc accaaccagg caccgaaccg tggtgccgct
     3841 gcgaccgcga tcccggccac gacctcgatc acacccaccg cgtacatcgt ctgctgcacc
     3901 gtgccgggca caacggcatc gatccacggc gccaggtagc ccggccaggg cacgaggagg
     3961 ttggcgaatt tgtcgagccc gaataggatc ggggccaccg tgaacacggt gcgtaatagc
     4021 aggaaggcct gatacgccgg gtcggaccag acggtcgacc gcgcggtgct cgatgtcgac
     4081 acgtcagcgg cagtcatgaa aacctcctaa ggacaacacc gaccaccgtg aggtgctcgt
     4141 ttatgtcagc tcctcgcggt cgaactctct tctaacgtca tgatatgctc acgctagaat
     4201 gcggagggtg ttccgtcaac aggagttggt tttaggtggc tggtgtggag cggtctcagc
     4261 aggtgcagat ctcggcggtc gccgcgctcg atgaaccgag ccgccgtcgg ctgtacgact
     4321 acgtggtccg tcagcccgag ccggtcagtc gtgacgaggc cgccgaagct ctggagctgc
     4381 cgcgcagcac ggcagcgttt catctcgacc ggctcgtcga ggaggagcta ctcggcgtgg
     4441 agtaccagcg ccgcaccggc cgcaccggcc ccggcgcggg gcgcccggcc aagctctacc
     4501 ggcggtcgga ccagcacgtg gcggtgtcgc tgccccagcg ccgctacgag ctggccgggc
     4561 agttgttgtc cggcgccatc gagcacgccg aacgcaccgg ggactcacca cgggcgagcc
     4621 tcgatcagcg cgcccaccag ctcggcaaac agctcggcga aacagcgcgc aacgttgctg
     4681 gcgaccacga cactcaggac accgcgctag aggtacttga ggcacacggt tttgaaccgc
     4741 gcagggaagg tgatcaggtc atgctcacca actgcccgtt ccgtaccttg gcgcaggaat
     4801 acaccgaact tgtgtgtgga atgaacctgc gcctgctcga tgggcttctc gagggcctcg
     4861 cccccaccgg gctgatggcc cacctggacc ctaccccgcc caactgctgt gtccgcctcg
     4921 tcaagggggc cagctaacga caccgacccc tgcgatgtgg gtgccgccca caccgcccag
     4981 ctactcaacg tctccgactg tttgaaagga ctgctcgtga tggcttctcc gcatgagctg
     5041 gtgcgccgcg ttgaacgttt caccgccctg gacaagctcg ccaagccggt acgcgggttg
     5101 gtcggcaagg ccgtgcggcc tcgccgggtc cgtaacctgc tcagcgggac gaagctgggt
     5161 catccggccc atccgatgct gaccgacctg ccgatcggcg cctggagcat gtctgcgttg
     5221 ttggacaccg tcggtggggc cagcgctgcg ccggccgccg acctgctcat cagcgtcggc
     5281 atcctcagcg cgattcccac ggccgtgacc gggctcaacg actggtcgga caccatcggc
     5341 gcggagaccc gcatcggagc ggttcatgcc ggcgccaatg tggccgcgct cggcctctac
     5401 acagcatcgc tgatcgcccg ccgcagtggt cggcgagtcc gcggcaaggt actggggctc
     5461 gctggcctcg gggtcctgat ggtcggtgga tacctcggtg gtcacctgtc ctatgccagg
     5521 gcggtcaacg tgaaccacac cgccttcgag cacggtccgc aggagtggac cccggtgctg
     5581 gccgacgcgg agctcggcga gggcgagcat cgccgagtta ccgccggcga ggccgcggtg
     5641 ctgctcgccc gcagcgacgg cgagctttac gcactggcca acacctgcag tcacgccggc
     5701 ggcccactcg atgaggggga gctcgtcgac ggctgcgtcg tctgcccgtg gcacgccagc
     5761 accttccagc tcaccgatgg cagtatcgtg cgcggtccgg cctcggtacc ccagcccact
     5821 taccagaccc gggtccgcga cgggaaaatc gaggtccggt cgatcggatg agcaccgcgc
     5881 ggtgcaccct catttaccgg ccgccatggc actcaccctg gcccctgcgc cccaccgggc
     5941 gggtcggctg tgcggcgcac actgcgccgg gtcagtgcca ggacggacga tgtgctgagg
     6001 gaagcggcta tgcactctag tgcagggtag aacttcggga ttaggcggaa ggatcaaggt
     6061 ctgcggtgag ctgaaagact tgaggtgtcg actcaagcaa tcaccttaga ctgcctgttc
     6121 accgagctga tcatcgaacc caacgccgct tgtcaccgtc cacggtctct aatcacccgg
     6181 agctggccat caatggacag tcttattcag cttcgccgag acattcatat gcatcccgag
     6241 ttggcacgcc aagagttccg gactacttct gtcgtgtcgg ctgcgcttgc cgaggccggc
     6301 ttagtcggcc gcgtgctgcc ttctggaacc ggccttatgg ttgatatcgg tgccaagtct
     6361 ggtccattga tcgctttgcg tgccgatatg gacgctctac cgattcagga cgataaggac
     6421 gtaccgtatc gttcgcggat ccctaacgtc tgtcacgcat gtggtcatga tgtgcacacc
     6481 gcgattctcg tcggcgcggc gattgaacta gcacggtctg acttggctag cttcggtcgt
     6541 gtccggtgta ttttccagcc tgcggaggag tcatctgaaa gcggttcgct cgacatgatt
     6601 gcagcgggtg cactggacgg tgtcaaccgc atttttgctt tgcattgtga tcccagcgcc
     6661 caggtgggaa ccgtcgggac tcgaagtggc ccgatcacat cggctgcgga tcacatggtt
     6721 atcaaaatca aggggcttgg cggccactct gcacggccta atctaactcc caaccctatt
     6781 atcgctgttt gtaccgtagt tacttccctc cccgatgcag tcaatgcgca acttcctgag
     6841 catgaacgcg tgctgatcgg tttcggcact atatcatcga atggcgcaaa gaacgcgata
     6901 ccctcatacg cggaggttag cggtacagtc cgaatccccg atagtgccgt gtgggctggc
     6961 atgccgaacc tgattaaaac ggcggttgac aacatcgttc agccgttcga gctcgattgc
     7021 gatgtcgact atgtgcgcgt ttgtcctgcc gttataaatg actcgaatgc aactgcaata
     7081 attgatcaag cagctctctc cgttgtcggc agagagaatg tgtacaagcc cccccagagc
     7141 ttcggcgccg aagatttttc ctggtatcta cgggatgttc ctggcgccat cttccgtcta
     7201 ggagtgcgag ctcatggaag tgcaactcaa gtcgacctgc attccggtca ctttgacgtc
     7261 gatgaacgag cgatcggtgc cggagttaag atgttcactc gtatcgcaat aggcgcaacc
     7321 cgtgccatca gtagcatgga taagccgtgt gaggatctcc gaaatatgga ataatgagtg
     7381 agcaaggagc gccaagagct actcactcga ggacatgacc acctcaccac agacgatcgc
     7441 gacgccaggc ctcgtgccaa cgcctgtcac acgaagagac aaccgatcgc gacaattaag
     7501 gatactggtt gtgaacggac acaaaaagtt accgtctgcc gcaacgccaa gcctatctca
     7561 ccgatgtggc gcgtggctgg tgactcgtgt cggctggtaa gcccacgagc gatgcggtgg
     7621 ttaccctgta ttcggatccg tcgccgcgga ccggttcgtg cccgcagcca gcccactcga
     7681 gtattcgccg acaagcctca ctccgacaac gcgatccacg ctcacctgcg gagacgccgg
     7741 atcaaaacta cggcttcccg gacgaccagc caacaaacca actacctccg ccgcagcagt
     7801 atgggcggac gaccacttgc gatcctcgcc cgaacgttgc aagcagcgca acaccgtcaa
     7861 gcgtgccacc cacaaattca caacattccc cgccgtggac atccgaggtg atgagcgcac
     7921 ctacacccga ggaattaaca tttcagcccc gaatagatgg aaatccacaa agttatttca
     7981 acttcagtac cgacggctta tatccgataa cgctacccgc ttcgaaaaaa gaagtccttg
     8041 taatgaggga tgcaaaaaca gtgcgtcttg tcatgactga cccgagattc agcctggccg
     8101 ggttggatcc aaacgaggat acagtcaccg gcactggata ccaatcgccc agtggtatgt
     8161 tgcggcagga cctcccacat attagatgta tccgtcgtgc gataataccg tttttctccg
     8221 agcaaagtat tgccccatgg cgggaggaag ttgccgggat tgcagatgac ttgataagca
     8281 aactactaaa ggggcaccgg ctggctgacc tcaataagcg atattttgaa ccgctcgtcg
     8341 ttcgagctgt cgccctgtcc gccggcatca ccaaaaatga gagtgataca ctgtatca
//
LOCUS       DASVXZ010000459         7612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1750811, whole genome shotgun sequence.
ACCESSION   DASVXZ010000459 DASVXZ010000000
VERSION     DASVXZ010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7612
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1750811"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..714)
                     /locus_tag="VF788_09465"
     CDS             complement(43..714)
                     /locus_tag="VF788_09465"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX8934405.1"
                     /translation="MIASTTEYVDTRDMIAVHTAFRREFRLAPGLVRGTAVGDVSRAS
                     IVSAHLELFNGFLHLHHMGEDRLLWPKLLDRVPRELAAVITLMQTHHERIHDLMASAE
                     TPLLRWRSRAGAAERDELAGVLDQLYAVLEEHFGAEEQHILPLAVRLMSAAEWQQLGK
                     EGMAELPKNQLSRVFGAIMYQGNPAVISSMLAHAPMLPRLLMPVLGPRAYARYARRVH
                     GTTKP"
     gene            919..1176
                     /locus_tag="VF788_09470"
     CDS             919..1176
                     /locus_tag="VF788_09470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934406.1"
                     /translation="MAGVCDRRRRTFGARRGLARIEAAVASWEAGGVLLIQGAGGIGR
                     STLLRTLCEHAARQGLRTLKTRLSELERDLGSLAALATRRG"
     gene            1301..4234
                     /locus_tag="VF788_09475"
     CDS             1301..4234
                     /locus_tag="VF788_09475"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8934407.1"
                     /translation="MPMVQMGRPVGEGRTAAGAARDGQTADPKLRLNRERTPLPGGRG
                     LLERGTELARVKHAIAALARGYGDVLIIQGAAGIGKSTLLRAVCEQATGRGLQTLTAR
                     ASELERDFGFGVVRQLLETRLVHASESERGELLAGAARLAGPVLGLGGGSGDAFAALH
                     GLYWLVANVAAVRPIVLAVDDLQWADEPSLRWLVYLSRRLEGLPVLVAVATRTPRPGH
                     SPLLAELLAMDGIRFLSPGPLSEPAVAQLLNEGLGAQPDPTFTTACAKASGGNPFVLH
                     ELILDLTADGVPPLAAQAAGVAHRLPDQVGRTVLARLGRLAPEAARLAMAVAVLGEGT
                     GLRLAAALAYLDIDVAAGAADALLTADLLAEGSPMRFAHPLVRSAVYEQLAPGARSRG
                     HARAARLLAGEGAEPEQVAVQLLACEPASDTDAVQTLRAAAATALARGAPETAMTYLR
                     RALAEQPKASARAAVLGELGSAERVARHPAAAAHLEQAWQASTDPVARARFADQLANV
                     FFFTGKSDRCLAVLQAGLTDLGARDPGLALRLNAHKAGMQLLIVAPTEVPAVTLQELR
                     ELANRSSPASRSAKLALAFALVVRGESCPEVTELVERGWDDGQFLAEETCEAMPAIFA
                     AVARALTDELDQAHALTEAMLADAQERGSVIGFLAATARRGLIALRRGTLAEAEADTR
                     AALELDAEHNLTLAVPVHAAYLGLTLLERGKLDEAAAVVEGITPGLSIVAPSIAATLL
                     EARGRVRLACGRRTLAIADLRHCGQLADRMRLYNPNLFAWRSTLALALEPEHPHEART
                     LVQDELERARRAGSSRATGIALRVGGLLTGGKDGIELLQQSVTVLEPTPMRLELAYSL
                     TELGAALRRAGARTAAREPLRRALDLAARCGATPLSERAREEALAAGARPRRPFTSGM
                     QALTPSELRVARLAAQAMGNRDIAQALFITTKTVSDHLSSTYRKLNINSRDELAITMT
                     THISP"
     gene            complement(4676..5152)
                     /locus_tag="VF788_09480"
     CDS             complement(4676..5152)
                     /locus_tag="VF788_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010241011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX8934408.1"
                     /translation="MTRMEYYHDVAAPQARGLLPVAYAIVRNDLNQILLVRRADDLYW
                     ELPGGRVDIGESASTAVVREVAEEAGVTIEVTGLAGVYSDPGHILAYPGGERVYQQFA
                     VCFHALTTVHNAEPDQDETIAATWFDPEQATQLVMHPAMHRRLTDALTEPSRAHFD"
     gene            complement(5270..7261)
                     /locus_tag="VF788_09485"
     CDS             complement(5270..7261)
                     /locus_tag="VF788_09485"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011872987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma and tau"
                     /protein_id="HEX8934409.1"
                     /translation="MALALYRKYRPASFAEVIGQDHVTEPLRTALAAGRINHAYLFSG
                     PRGCGKTSSARILARSLNCAQGPTPDPCGVCPSCVALAPEGPGSIDVVELDAASHGGV
                     DDARDLRDRAFYAPAESRYRVFIIDEAHMVTTQGFNALLKIVEEPPEHLVFVFATTEP
                     EKVLATIRSRTHHYPFRLLPPSTMRGLLERVCAAEGVTIEPAVYPLVIRAGGGSARDS
                     LSVLDQLLAGAGTDGVTYARAVALLGVTDVALIDDMVSALSAHDGAAVFSTIDRLVEA
                     GHDPRRFASDLLQRFRDLVLLRVAPEPASHGLVDAPEDQLRAMTVQAETLGAGTLTRF
                     AEITHNGLVEMRGATAPRLLLELLCARMLLPAAAEGDSAMLHRLERLERRFTITEPPP
                     DQPVIAQPNIDPERSPGSAGAEPVSTSPVSKPKLPSPDPQRPEFRRPPAQRPHTEPPD
                     VHRPSAQSLDAQPAQAQHAQAQPQPVPDQLDAAAVRRVWPALLDAVREQSRATQVLFS
                     NSTASSVQGSTLILSLPTAPLARRLGEERNIEMIKRALHTVLGVDWQVRCEHAGGNTS
                     PGGAQQRPPERATRSPQRPPERPSRRAVTPQPSDDGVPPPPEPPDPEDPGPATPLDDE
                     AMLAEAASMSREPSSRQDPEEVALALLAEQLGARRIDER"
BASE COUNT         1190 a         2440 c         2671 g         1311 t
ORIGIN      
        1 tttaaacggc cgccgaacag tgcgaacttc tagcgaagcg cttcagggtt tcgtggtgcc
       61 atgcactcgt cgggcatagc gggcatacgc ccgtggaccc agcaccggca tgagcagccg
      121 cggcaacatc ggcgcgtgag cgagcatcga ggagatcacc gcggggttcc cctggtacat
      181 gatcgccccg aacacccgcg acagctggtt cttgggcaac tctgccatcc cttccttgcc
      241 gagctgctgc cactccgcag ctgacatcaa gcgaaccgcg agcggcagga tgtgctgttc
      301 ctcggcaccg aagtgctctt cgaggacggc gtagagctga tcgaggacgc cggcgagctc
      361 atcgcgctcc gccgcgcccg ctcggctcct ccatcgcagg aggggggttt ccgctgacgc
      421 catgaggtcg tggatccgct cgtgatgggt ctgcataagg gtgatcaccg cagcgagctc
      481 cctcggcacc cggtcgagga gctttggcca gagcaaccgg tcctccccca tgtggtggag
      541 gtgcaggaaa ccgttgaaca gctcgaggtg cgcgctgacg attgacgccc gtgacacgtc
      601 gccgacggcc gtgccgcgca ccagaccggg cgcgaggcgg aactcccggc gaaacgcggt
      661 atgcacggcg atcatgtcgc gggtgtcaac gtattccgtg gtggaggcga tcacagaagt
      721 ctccttagag tcagaagagg tggtgccaac ggctggaaat gattgacagc tgatcgaggg
      781 acattcctgg tcggcttggc gcgatgtggc ttgtggtgta gaggatcgag tgttgctttc
      841 gtgcggatgg ggttcatcgg atacgggtgc ggactttttg ttgtcccgtg ccggatgttt
      901 gcgtcctgca ctttcgacat ggcgggggtt tgcgaccggc ggaggcggac ttttggagcg
      961 cggcgggggt tggcgcggat cgaggcggcg gttgcgtcct gggaggcggg tggcgtgctg
     1021 ctcatccagg gcgccggcgg gataggcagg agcacgctgc tacgcaccct gtgcgagcac
     1081 gccgcccgac aagggctgcg gacgctgaaa acgcggctca gcgagctgga gcgcgacctc
     1141 gggtcgctcg cagccctggc tacacgccgc gggtagcggc gggttcgcgc cggcggaggt
     1201 ccacccgatt ggggtggaca gcccacgtac gtacccggtg ttgttcggcc tctttccgtt
     1261 gggtcgccgg tgtcgaccgg cagagggaga ggacctcgac atgcccatgg tgcagatggg
     1321 acggcccgtt ggtgagggca gaacagcggc aggtgccgct cgcgatgggc agaccgccga
     1381 ccccaagctg cgcctgaacc gtgaacgaac gccgctgccg ggagggcggg gactgttgga
     1441 acgcggcacg gaacttgcgc gcgtcaagca tgcgatcgcg gcgctggcgc ggggatacgg
     1501 ggatgtgttg atcatccaag gtgctgcggg gatcggcaag agcactttgt tgcgggcagt
     1561 gtgcgagcag gcaaccggtc gggggttgca gacgttgacc gcccgggcca gtgagctgga
     1621 gcgcgacttc ggattcgggg tggtccgcca gctactggag acacgcctcg ttcatgccag
     1681 cgagtctgaa cgcggtgagt tattggccgg tgctgcgcga ctggcaggcc cggtgctggg
     1741 cctcggtggt ggttcaggcg acgcatttgc cgcgttgcac gggttgtact ggctggtagc
     1801 caatgtggcg gctgttagac ccatcgtctt ggcggttgac gatctgcagt gggccgatga
     1861 gccatcgttg cggtggctgg tttacctgag ccgccggttg gagggactgc ccgttctggt
     1921 cgcggtcgcc acccgcacac cacgccccgg acactccccg ctgctggccg aactgcttgc
     1981 catggacggg atccggttcc tgtctccagg cccgctcagc gagccggcgg tggcccagct
     2041 gctcaacgaa gggttaggcg cacagcccga cccgacgttc accaccgcgt gcgcgaaagc
     2101 cagcggaggc aatccattcg tgctccatga gttgattctg gatttgaccg cagacggtgt
     2161 accgccgctc gcggcgcagg cggcgggcgt ggcccaccgt cttcctgacc aggtggggcg
     2221 aacggtgctg gcccggttgg gacggttggc tcccgaggcg gcgcggctgg ccatggcggt
     2281 ggcggtgttg ggtgagggca ccgggctgcg tctggcggcg gcgttggcgt atctggatat
     2341 cgacgtcgcc gctggggcgg ctgatgcgct cctgactgct gatctgctcg ccgagggcag
     2401 cccgatgcgg ttcgcacatc cactggtccg ctccgcggta tatgaacagc tcgcacccgg
     2461 tgcgcgatcc cggggtcacg cgcgcgccgc acggctgttg gccggtgagg gtgcagaacc
     2521 tgaacaggtc gccgtgcaac tcttggcctg cgagccggcg agcgataccg atgccgtgca
     2581 gacgttgcgg gcagccgcgg cgacggcgtt ggcccgcggt gcccctgaga cggcaatgac
     2641 gtacctgcgt cgggcgctgg ccgagcaacc taaggcgtcc gcccgtgctg ccgtgttagg
     2701 tgaactcggc agcgcggaaa gggttgcccg ccacccagcg gccgcagcgc atctcgaaca
     2761 ggcctggcag gccagcaccg acccggtagc acgagcgcgc ttcgccgacc agctggcaaa
     2821 tgtgttcttc ttcaccggca agagcgaccg ctgcttggct gtgttgcagg ccggcctgac
     2881 cgatctcggt gcccgcgacc cgggcctggc gctacgcctg aacgcccata aggctggcat
     2941 gcagctcctt atcgttgctc cgaccgaagt acctgcggtc accctccagg agctacgtga
     3001 actggctaac cggagcagtc ctgccagccg ctcggcgaag cttgccctag catttgccct
     3061 tgttgtccgt ggggagagtt gccccgaggt aaccgaactg gtcgagcgtg gctgggacga
     3121 cggtcagttc ctggccgagg aaacctgcga ggcgatgccg gccatattcg ccgccgtggc
     3181 ccgcgccctc accgacgagc tggaccaggc tcacgcactg accgaggcaa tgctggccga
     3241 cgcccaagag cgcggatcgg tgatcggctt cctggctgcc accgcccggc gcgggctgat
     3301 cgcgctgcga cgcggcacgc tggccgaggc tgaagccgac actcgcgccg cgctggagtt
     3361 ggatgccgaa cacaacctga ccctcgccgt tccagtgcac gccgcctatc tgggtctgac
     3421 gctgctcgag cgcgggaagc tcgacgaggc agccgctgtc gtggaaggga tcacccctgg
     3481 cctcagcatt gtggcaccgt ccattgcggc tacccttctg gaagcgcgtg gccgggtgcg
     3541 tctggcctgc ggtcggcgga cgctggccat cgcggacctg cgccactgcg gtcaactcgc
     3601 cgatcgcatg cggctgtaca acccgaatct cttcgcctgg cggtccacgc tggcactcgc
     3661 gctggaaccc gagcacccgc acgaagcacg cacgttggtc caggacgagc tcgaacgggc
     3721 ccgccgcgcc ggttcgtccc gcgcgactgg catcgccctg cgcgtcggtg gactactcac
     3781 cggcggcaag gacgggatcg agctgcttca acagtccgtc accgtcctcg aaccgactcc
     3841 catgcggctg gagctggcgt attcgctgac cgagctgggc gctgcgctgc gccgtgccgg
     3901 cgcccgcacc gccgcacgcg aacccctgcg ccgcgccctt gatttagctg cccgctgcgg
     3961 cgccacaccg ctgtccgagc gcgcccgcga ggaagcgcta gccgctggcg cccggccccg
     4021 ccgacccttc accagcggca tgcaagcgct gacccccagc gagctgcgag tcgcccgctt
     4081 agccgcgcaa gctatgggca accgggacat cgctcaagcg ctgttcatca ccaccaaaac
     4141 cgtcagcgac cacctctcca gcacctaccg gaaactcaac atcaacagcc gcgacgaact
     4201 cgccatcacc atgaccaccc atatttcgcc gtaaccggcg cctgccatgc gtatgcctca
     4261 ctgggagtca tcggccgttg ttggtccatg ctggcgaagg ttctacccgg ttgaagcagg
     4321 tcaattttca gttaccacgc ggtggtcagt atcgggctgc cgtcgacggg acagaaatcg
     4381 tgcaacgcgc caggggtgcg acgcgataag gctgatagcc ccgtgctgct gtcgaacctt
     4441 gaccggtggt gtcacggggt ctccctcctc ggtcgtgaca cggtaagcgg agaggactga
     4501 tcgcgattcg ttggaccctg tggttttcgt tactactagt cgtggtgttc gcgctcacca
     4561 ccgggtatca cctcggcacc cagtacgtcg agcaactgct cacacgatga agactgctca
     4621 tgatcgctga cgtcgccgtt gaattcccgc cgccgtgacc tcgtggcagt ggtgtttagt
     4681 cgaagtgtgc ccggctcggt tcggtcagtg cgtcggtcag gcgtcgatgc atggctggat
     4741 gcatgactag ctgtgttgct tgctcggggt cgaaccacgt tgcggcgatc gtctcgtctt
     4801 gatcgggctc ggcgttatga actgtggtga gggcgtggaa acacacggcg aactgctgat
     4861 aaaccctctc accacctggg taggccagaa tgtggccagg gtcgctgtac accccggcga
     4921 gcccggtgac ctcgatggtg acgccggctt cttcggcgac ttcgcgcact accgcagtcg
     4981 aggcggattc cccgatatcg acgcggccgc cgggcagctc ccagtacagg tcatcggcgc
     5041 ggcgcaccaa cagaatctgg ttcaggtcgt tacggacgat tgcgtaggcc accggtaaca
     5101 gtccgcgagc ctgaggtgcg gccacatcgt ggtagtactc catccgcgtc atgtacccga
     5161 tggttggggg cgcgggcctc acgggcaatg gccgaaagac taaccgcaga taaacactag
     5221 gtgaactgtc atttcctacc tcgctcccga ccgcggccct cgaaacccgt taccgttcat
     5281 cgatgcggcg ggcgccgagc tgctcggcaa gcaatgccag cgcgacttcc tcaggatctt
     5341 gacggctgga aggttccctg ctcatgctgg cggcctcggc gagcatcgct tcatcgtcga
     5401 gcggagtcgc cggaccaggg tcctccggat ccggaggctc cggaggtgga gggactccgt
     5461 cgtctgaggg ctgtggcgtc acggcccgcc tgctaggacg ctccggcgga cgttgcggtg
     5521 agcgggtggc gcgctccggc ggacgctgct gggccccacc gggacttgtg ttgccaccag
     5581 cgtgctcgca gcgcacctgc cagtcgacac ctaggacggt gtgcagcgcc cgtttgatca
     5641 tctctatgtt gcgctcttca ccgagcctgc gggccagggg ggcggtaggc aggctgagga
     5701 tgagggtgct gccctgcacc gagctcgcgg tcgaattgct gaacaggacc tgggttgccc
     5761 ggctctgctc acgcaccgcg tccaacagcg ccggccatac ccgccggact gcggcggcgt
     5821 cgagctgatc cggcacgggt tgaggctggg cctgcgcgtg ctgggcttgc gcgggttggg
     5881 catccaggct ctgggctgat ggacgatgga cgtccggagg ctcggtgtgc ggacgctggg
     5941 ctggcggacg ccggaattct gggcgttggg ggtccgggct cggtagcttc ggtttgctca
     6001 caggcgacgt cgatacgggc tctgcccctg ccgaacccgg tgagcgttct gggtcgatgt
     6061 tcggttgggc aatcaccggc tgatctggcg gcggctcggt gatggtgaat cggcgctcga
     6121 gccgctccag ccggtgcagc atcgcgctgt ctccctcggc ggcggcgggg agcagcatcc
     6181 gggcacacag cagttccagc aacaggcgtg gcgcggtggc tccgcgcatc tcgacgaggc
     6241 cgttgtgggt gatctcggca aaccgggtca gagtgccggc acccagggtt tcagcctgca
     6301 cggtcatggc cctgagctgg tcttcgggag cgtccaccag cccatggctg gccggctcgg
     6361 gagcaacccg cagcagtacc aggtcacgga agcgctgcag gaggtcggag gcgaagcggc
     6421 ggggatcatg tcccgcttcg accagccggt cgatggtgct gaagaccgcg gccccgtcgt
     6481 gggcagaaag tgccgagacc atgtcgtcaa tcagtgcgac gtcggtgacg ccgagcagcg
     6541 ccaccgcgcg ggcgtaggtg acgccgtcag tgcccgcccc ggcaagcaac tggtccagca
     6601 cggacagcga gtcccgggcg gagccaccac cggcccggat caccaggggg taaaccgccg
     6661 gttcaatagt gacgccctcg gcggcacaca cccgctccag caggccgcgc atggtgctcg
     6721 gcggcagcaa ccggaacggg tagtggtggg tgcgggagcg gatggtcgcc agcaccttct
     6781 ccggctcagt ggtggcgaag acgaatacga ggtgttccgg cggttcctcc acgatcttta
     6841 gcagggcgtt gaaaccctgc gtggtcacca tgtgagcctc atcgatgatg aacacccggt
     6901 accgggactc ggcaggagcg tagaacgcgc ggtcccgcag gtcgcgggcg tcgtccacac
     6961 cgccgtggct ggccgcgtcg agctcgacga cgtcgatcga tcccgggccc tcaggcgcca
     7021 gcgcgacaca cgacgggcaa accccacacg ggtccggcgt cggaccctgt gcgcagttca
     7081 aggatcgggc caggatgcgc gcgctagagg tcttcccgca gccacgcggg ccggaaaaga
     7141 ggtaggcatg gttgatgcgg ccggcggcca gcgccgtgcg tagcggttcg gtgacatggt
     7201 cctggccgat cacctcggcg aaggacgccg ggcgatactt gcggtagagg gccagtgcca
     7261 cggccgcgag gctaccggtg agcgcggtcc gacaacttcc agggcgtggg cgctggcggg
     7321 gcttagacgc acgtctcccg gtgctctccg ccgcccggag gtggcgggga ccgctcgaga
     7381 cagaccggcg gtgtaacccg gcctggccgg cacaccctgg cggtgcggga tcggcagctg
     7441 tcatgagctc accgggccag cgtgtcgtgg gctggtcagg tggctgctgt ctgcgcgcgg
     7501 tcccagaagc ccttgacata caccgagcgc cggtcgatgc cgcgctcgtt gagcaggtgc
     7561 gcccggatcc ggcggaccgt cgggttgtgc ccggccagcc agatccggcc tt
//
LOCUS       DASVXZ010000460         4156 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_407834, whole genome shotgun sequence.
ACCESSION   DASVXZ010000460 DASVXZ010000000
VERSION     DASVXZ010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4156
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407834"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1093
                     /locus_tag="VF788_09490"
     CDS             <1..1093
                     /locus_tag="VF788_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEX8934410.1"
                     /translation="PVVFLAYSGTSSWRTSAGEEMSARLGEPMTNEQTARAWRTALDP
                     AGEWIPAVLSAADRRLTALRSGGMPDAGGLVIATDQTTARAYAEILTRVTGTPPVVVL
                     SDDPSASGRIARFGDSDEPWMVAVRMVSEGVDVPRLAVGVYATSAATPLYFAQAVGRF
                     VRSRRPGETATVFLPSVPVLLGLASELEKQRDHVLGAPHRAAEGWDDEALAQANAQLD
                     EPGEQERAFTALGASAELDQVIYDGASFGTAAMATTEDEQDYLGLPGLLQPDQMRALL
                     RRRQEQQLARATEHSSGSSVSTRSPTMREHLAGLRRELNTLVAMAHHRTGRPHGVIHQ
                     DVRTACGGPPTAMATADDLEKRIAYLRSQ"
     gene            complement(1139..1324)
                     /locus_tag="VF788_09495"
     CDS             complement(1139..1324)
                     /locus_tag="VF788_09495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934411.1"
                     /translation="MTSTLTRPELTASDRCDRCGAAARVRAVLPSGGELLFCNHHARE
                     HSSKLKELAADIQDSGA"
     gene            1675..3036
                     /locus_tag="VF788_09500"
     CDS             1675..3036
                     /locus_tag="VF788_09500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HEX8934412.1"
                     /translation="MVDAGALALDLAASGVVGVTITWADNNGIPRSRTVPVSSLPEVT
                     QRGVGITPLFAVYDTHDAITFAHEGLSTPSGDVRLIPDLRGLTRLAGQPAFAWAPGRQ
                     VAVDGSPWPYDQRGVLEAQIEAAAAEGLEIKAGYEMEFVLVQAADPGTEAAPQPAYQA
                     PCYSPHALLEVDEFIGDLLSDLAANGVPVNQLHAEYGPAQVELSIVASDPLTAADRQL
                     LTRQTIHAAARAHGLRACFAPLFTVAGVGNGWHLHTSVWRSGRNLLAGDADRGPGPEG
                     VGWLGGLLRDLRALAAITAPSVPSLARLRPGYWASAYQFWGVENREAPLRYVLGSELL
                     GADHANVELKVSDASANPYLALAAVIAAGVAGLRDGADPGEPIQADPGGWTEQDRAAR
                     GVTRLPTTPAGQEEALITSKRLTAVLGEQLLGAFLAVRRSDATWAADRPLDDVVAAHR
                     WRY"
     gene            complement(3065..>4156)
                     /locus_tag="VF788_09505"
     CDS             complement(3065..>4156)
                     /locus_tag="VF788_09505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934413.1"
                     /translation="RPAAQLTRRDVARLMVSVPSMDALAAMPTLRRELLAARNPFSAK
                     FWESAEAVLKRIAAGAATVGEVHGWLEATGTEPTAIIGLHVWEEEPSRTQLAHEMHDL
                     LVTHLEEHLAAGDIDPDQLLTDNPAALKEYRALQERWLTSPLPDGRIPMNELLDEADE
                     DLFAEWDAAEQAALDELQDILDEVGERPRPDAELETACRGLRITLQHGQWPADLLRTG
                     GGVDPQNLDPDDQQLWLRLATGVVNPVEEPPEDIPVEELSATALDHEEWLWAVEALAR
                     GGPGTPASAEDLARFTAGASDDGDDIDVLAGWFSSVVEQWRLLGALDDRERLTRLGWW
                     GLPEALIQAWSTDADSPDPAGSAGLRRVE"
BASE COUNT          657 a         1423 c         1408 g          668 t
ORIGIN      
        1 gccggtcgtg ttcctcgcct actccggcac gtccagctgg cgcaccagcg cgggcgagga
       61 gatgagcgcc cggctcgggg agccgatgac caacgagcag accgcacgtg cctggcgcac
      121 cgcgctcgac ccggcgggcg agtggatccc ggcggtgctg tcggccgccg accgcaggct
      181 caccgccctc cgcagcggcg ggatgcccga tgcgggcggg ctcgtgatcg ccacggacca
      241 gaccacggcg cgcgcctatg cggagatcct cacgcgcgtg accggcactc cacccgtcgt
      301 cgtgctgtcc gacgatccgt ccgcctccgg gcggatcgcc agattcggcg actccgacga
      361 gccctggatg gtggcggtcc ggatggtgtc cgagggtgtc gacgtgcccc ggctagctgt
      421 aggggtgtac gcaacgtcgg cggctacgcc gctgtatttc gcccaggcgg tcggtcgttt
      481 cgtccgttcc aggcggccgg gcgagaccgc gaccgtgttc ctgcccagcg tgcccgtgct
      541 gctggggctg gcgagcgaac tcgagaagca gcgcgatcac gtcctcggtg ccccacaccg
      601 ggctgccgag ggatgggacg acgaggcgct cgcccaagcc aacgcgcagc tcgacgaacc
      661 cggtgagcag gagcgcgcgt tcaccgcgct gggtgccagc gcagagctgg accaggtgat
      721 ctatgacgga gcgtcattcg gtacagccgc catggccact accgaggatg aacaggacta
      781 ccttggactg cccggcttgc tccagcccga ccagatgcgg gccctgctac gacggcgtca
      841 ggaacagcag ctcgcgcggg cgactgagca ctcgtccggg tcgtcggtga gcacccgctc
      901 accgacgatg cgcgagcatc ttgctggact acgccgggaa ctcaacaccc tggtcgcgat
      961 ggcccaccac cgcaccggcc gaccgcacgg ggtgattcac caggatgttc gcacggcgtg
     1021 cggagggccg cctactgcga tggccaccgc cgatgacctc gaaaagcgca tcgcctacct
     1081 acgaagccaa tagaccctcc atcacacttg ctgtctcgaa cactgccgtt gccgacggct
     1141 atgccccgct gtcctgaatg tctgccgcaa gttccttcag cttcgacgag tgctcacggg
     1201 catggtggtt gcagaacagc agttctcctc ccgagggcaa cactgcccgg acacgtgcgg
     1261 ctgcgccgca tcgatcgcaa cggtcggaag cggtcaactc agggcgggta agcgtgctgg
     1321 tcatgacttc tccctccgtc ctggtcaggt caaaacgacc agacccggtc gaaccggcgg
     1381 cggtactcac gggacccacc cgtcaaccct agacatcgga tcccagggtc ccactgttgc
     1441 agacgaacgc agtccttgat gtgttcccga ggttacgagt tacttgtctg gagctagtac
     1501 cgcactccgg gcgccgccgc gcaagtggca gtcaggatcg gaggggagcg gttggcccag
     1561 gcgagtcgaa ggaggttccc gccccgctgc tgtttggact gaccatcgac ggttccacgc
     1621 gctagcctga ccgcaaccaa gatccggtgt cggtgggcag ctaggaggac ggacatggtt
     1681 gatgcaggag ccctggccct ggacctggcc gccagtggcg tcgtgggcgt gaccatcacc
     1741 tgggcggaca acaacgggat accccgctcc aggacggtgc cggtctcgtc actaccggag
     1801 gtcacacagc gcggagtcgg gatcaccccg ttgttcgccg tctacgacac tcatgacgcg
     1861 atcaccttcg cccacgaggg tctgtcgact ccttctggcg acgtccggct gataccggat
     1921 ctgcgtgggc tgactcggct tgctggtcaa cccgccttcg cgtgggcacc tgggcgtcag
     1981 gtagccgtgg acggctcgcc ctggccctac gaccagcgcg gggtgctcga agctcagatc
     2041 gaggcggccg ccgcggaggg gttggagatc aaagcgggct acgagatgga gttcgtgctt
     2101 gtccaggccg ccgaccccgg caccgaggcc gcacctcagc ccgcctacca ggcgccctgt
     2161 tacagcccgc atgccctgct ggaggtggac gagttcatcg gcgacctgct cagcgacctg
     2221 gcggctaacg gagtgccggt caatcagctg catgccgagt atgggccggc gcaggtggag
     2281 ctcagcatcg tcgcctccga cccgctcacg gccgccgatc ggcagctgct gacccgccag
     2341 acgatccacg ccgcggccag ggcacacggt ctgcgggcct gcttcgcgcc gctgttcacc
     2401 gtggccggcg tggggaacgg ttggcacctg cacacctcgg tgtggcgtag cggacgcaac
     2461 ctgctggccg gtgacgccga tcgaggcccc ggaccggagg gcgtgggttg gctgggcggg
     2521 ttgctgcgtg atctccgggc actcgccgcg atcaccgcgc cgagtgttcc gtcactggcg
     2581 cggttgcgcc ccggctactg ggccagcgcc taccagttct ggggagtgga gaaccgcgag
     2641 gcgccgctgc gctatgtcct gggttcggag ctgctcggtg ccgatcacgc caatgtcgag
     2701 ctcaaggtct ccgatgcctc cgccaatccg tatctcgcgc tggccgcagt catcgcggcc
     2761 ggtgtggcgg gactgcgcga cggagccgat ccgggcgagc cgattcaggc cgacccgggc
     2821 gggtggaccg agcaggatcg cgctgcccgg ggcgtaaccc gcttgccgac cacgccggcc
     2881 gggcaggagg aggcactcat cacttccaaa cggctcaccg cagtgctcgg cgagcaattg
     2941 ctcggcgcat tcctcgcggt acgtcgatca gacgcaacct gggccgccga ccggccattg
     3001 gacgacgtgg tagccgcaca ccgctggcgc tactgaggcc gccgcatcag cgggctcagc
     3061 ggcgctattc cacccgccgt aaccccgctg agcccgctgg atcgggacta tcggcatcgg
     3121 tggaccacgc ctggatgaga gcctcaggga ggccccacca gcccagccgg gtgagacgct
     3181 cgcgatcgtc gagggcgccg aggagtcgcc actgttccac gaccgagctg aaccatccgg
     3241 ccagcacgtc gatgtcgtct ccatcatcgc tggcacccgc ggtgaaccgg gcgagatcct
     3301 cagcggaggc gggagtccct ggaccgcccc tggctagcgc ctcgaccgcc cacagccact
     3361 cttcatgatc gagagcggtg gcggacagct cctcgaccgg gatgtcctct ggcggctctt
     3421 ccaccgggtt gacgacaccg gtggccaacc gcagccagag ctgctggtcg tcagggtcca
     3481 gattttgcgg atcgacccca ccgccggtcc ggagcagatc ggccggccac tgcccgtgct
     3541 gcagtgtgat gcgtaggcct cggcaggcag tttccagctc cgcgtccggc cggggccgtt
     3601 cacccacctc gtccaggatg tcctggagct cgtcgagggc agcctgctca gcggcatccc
     3661 attcggcgaa gaggtcctca tccgcttcgt cgagcaattc gttcatgggt atccggccgt
     3721 ccggtaacgg cgaggtgagc cagcgttcct gcagcgcccg atactccttc agcgccgcgg
     3781 ggttgtccgt gagcagctgg tcggggtcga tgtcgccggc agcgaggtgc tcttcgaggt
     3841 gtgtgacgag caggtcatgc atctcatgcg cgagctgcgt gcgagagggt tcctcttccc
     3901 acacgtgcag cccgatgatc gcggtcggtt cggttccggt tgcctcgagc cagccatgca
     3961 cctcgccgac ggtggctgcg ccagcggcga tccgtttgag gacagcctcg gcagactccc
     4021 agaacttggc ggagaaagga ttgcgagccg cgagcagctc gcggcgcaac gtaggcatcg
     4081 ccgccagggc gtccatcgaa ggcacgctca ccatgagtcg agcgacatcg cgccgggtga
     4141 gctgggcagc gggacg
//
LOCUS       DASVXZ010000461         3509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_856174, whole genome shotgun sequence.
ACCESSION   DASVXZ010000461 DASVXZ010000000
VERSION     DASVXZ010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3509
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856174"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..1828)
                     /locus_tag="VF788_09510"
     CDS             complement(29..1828)
                     /locus_tag="VF788_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation acetate symporter"
                     /protein_id="HEX8934414.1"
                     /translation="MPGQAALYVTIAAMVMVAGATILAGFYGAKARQTSDFLRAAQTV
                     GPRWNAAAISGEYLSAASFLGIAGLVLKGGVDALWYPVGFTAGYLALLLFVAAPLRRS
                     GAYTLPDFAEVRLGSVRLRQICTAFVLIIGWLYLVPQLQGAGLTVHAVTGQPRWVGAA
                     VVMVIVTLNIYTGWMRSITIVQAFQYWIKLTALAIPVFVLLIHHAGHPEGARNSLGAV
                     APPSFARPTDITVDREIVLKVTEPTRVTVSGTQDRQLTNGPVDWEPAEHQIGKGTTLH
                     FDQGSRIPVISDAAVDYGRWLRPMGAGMHPLLATYSLILALLLGTMGLPHVLGRYYTD
                     PDGMAARRTTLLVLALLGVFYLFPMASGWLARLYLPELLAGTNTDAAVLMLPHAMLGR
                     WPALLLGALIAAGAFAAFVSAATGLVVSVAGVLSTDVLPGRLRDVRAATLAAWSVPLA
                     FMLAVSSLDLAQGVGLAFAVGASSFCPLLVLGIWWRGLTDAGAAAGILLGGGLAFAAV
                     LPAAAGVLPPEWQVLLAQPAIFTVPLAFLTMIVVSNRTSDRIPVDVSRILLRLHAPDR
                     LGLSEDRDLGQLGTRAGMAATALPRMRGGRHRK"
     gene            complement(1837..2364)
                     /locus_tag="VF788_09515"
     CDS             complement(1837..2364)
                     /locus_tag="VF788_09515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934415.1"
                     /translation="MSFGDMNLGDMSGDSSNDATGPDSDPWDALVRAAERAEAEERAA
                     RDSTVHPFAPRAKAAKRERIVLAKRRSSRRVVRTLAELEDQTSVGEVLVRQLVRVQLL
                     LSIRLMLLIVVVLGAIPVAFVLLPSLGTTTILGLRLPWLLLGLAVYPFFVAVAWSYNR
                     SAERNEQDFAEMVEN"
     gene            complement(2375..3190)
                     /locus_tag="VF788_09520"
     CDS             complement(2375..3190)
                     /locus_tag="VF788_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX8934416.1"
                     /translation="MSGNDDNPGLVVLAVDDEPGPMAMLLEVLEAEPRIGTIMTATNA
                     TEALSILRPDSRSPNGTPLPRVDVVFLDIKMPGLDGLELARVLATIPNPPAVVFATAY
                     DEKALDAFEIGATDYLMKPVSRDRLANTMRRIVASRRDATIQGQEQSNEDEVIPVELA
                     GTTKLVPRSSVRWVEAHGDYARLHTGEGTSHLVRIPLSQLEDRWSDAGFVRIHRSFLV
                     ALPLVTELRMSASGYVVRVGNGDDATELPVSRRHTRELKDRLVRAAKQGWTSR"
BASE COUNT          640 a         1217 c         1136 g          516 t
ORIGIN      
        1 tgttggaccg ttcggctgtc cggagtggtt acttacggtg ccgaccaccg cgcatccggg
       61 gcagcgcggt agcagccatc ccggcgcggg tccccagctg acccaggtcc cggtcctccg
      121 acaaccccaa ccggtccggt gcgtgcaggc ggagcaggat acgggacaca tctactggga
      181 tccggtcact ggtgcgattg ctcaccacga tcatggtcag gaaggccagc ggcacggtga
      241 agatcgccgg ctgcgccagc agcacctgcc actcgggagg aagcacgccg gccgcggcgg
      301 gcaacaccgc agcgaacgcc agcccgccgc cgagcaggat gccggccgct gcgccggcgt
      361 cggtcagccc acgccaccag atgcccagaa ccagcagcgg gcagaacgac gatgcgccca
      421 ccgcaaaggc cagcccgacg ccttgggcca ggtccagtga cgacaccgcg agcatgaagg
      481 ccaacgggac cgaccaggct gccagggtgg ccgcgcggac atctcggagc cggccaggta
      541 gcacgtcggt ggacagcacc ccggcaacgc tcaccaccag ccccgtggcg gcggagacga
      601 acgcggcgaa ggctccagcc gcgatcaggg cgccgagcag caacgccggc caccggccga
      661 gcattgcgtg cggcaacatc agcaccgcgg catcggtgtt cgtgccggcc agcagctccg
      721 gaaggtaaag ccgggcaagc cacccagacg ccatcgggaa caggtagaac accccgagca
      781 gtgccagcac cagcagcgta gtgcggcgcg ccgccatccc atccgggtcc gtgtagtagc
      841 ggcccagcac gtgtggcagc cccatggtgc ccagcagcag cgccaggata agcgagtacg
      901 tcgccagtag cgggtgcatg ccagcgccca tcgggcgcaa ccagcggccg tagtccaccg
      961 cggcgtcgct gatcaccggt atccggctgc cctggtcgaa atgcagggtg gtgcccttgc
     1021 cgatttggtg ctcagccggt tcccaatcga ccggcccatt cgttaattgc ctgtcctgcg
     1081 ttccggacac cgtgacccgg gtcggctcgg tgaccttgag cacgatctca cgatcgacag
     1141 tgatgtccgt cgggcgtgcg aaggacggcg gcgccacggc cccgagcgaa ttccgagctc
     1201 cttcgggatg gccggcgtgg tggatcaaca acacgaaaac cgggatggcc agagcggtca
     1261 gcttgatcca gtactggaag gcttgcacga tggtgatcga gcgcatccac ccggtgtaaa
     1321 tgttgagggt cacgatcacc atgacgacgg ccgcgcccac ccacctcggt tggcctgtca
     1381 cagcatgcac ggtgagccct gcgccctgaa gctgcggtac cagatagagc cagccgatga
     1441 tgagcacaaa agcggtgcag atctggcgca gccgcaccga gcccaagcgc acctcggcga
     1501 agtcgggcag cgtataggcg ccggagcgtc gcaggggtgc cgccacgaat agcagcagcg
     1561 caaggtaacc ggcagtgaac ccgaccggat accacagcgc atccacccca cccttgagca
     1621 ccagaccggc gatcccgagg aaggacgccg cggacaggta ctccccggag atggccgcgg
     1681 cattccagcg gggtcccacc gtctgggcgg cccgcaggaa atccgaggtc tgccgggcct
     1741 tcgccccgta gaagccggcc agaatggtcg ccccggcgac catcaccatc gcagcgatgg
     1801 tgacgtacag cgcagcctgc cccggcacgc tgacgctcag ttctcgacca tctcggcgaa
     1861 gtcctgctcg ttgcgctcgg cgctgcggtt gtaggaccag gccaccgcga caaagaacgg
     1921 gtagaccgcc agaccgagca gcagccacgg cagccgcaaa cccagaatgg tggtggtacc
     1981 cagcgacggc agcaacacga acgcgaccgg gatggcgcca agcacaacca cgatgagcag
     2041 catcagccgg atcgacagca gcagctgcac tcgcaccagc tggcggacca gcacctcacc
     2101 gacgctggtc tgatcttcca gttcggcaag ggtccgcacc acccggcggc tgctgcgccg
     2161 cttggccagc acgatccgtt cccgcttggc cgccttggcg cgcggggcga atgggtggac
     2221 ggtgctgtcc cgcgctgctc gttcctcggc ttctgcgcgc tcggccgccc tgaccagggc
     2281 atcccacggg tcgctgtccg gcccggtcgc gtcgttgctg ctgtccccac tcatgtcacc
     2341 gaggttcata tcaccgaagc tcatgtcgtg gccgtcatcg agacgtccag ccctgcttgg
     2401 ccgcgcgcac caggcggtcc ttcaactctc gggtgtgtct acgactgacc ggcagctcag
     2461 tggcgtcgtc tccgttgccc acccggacga cataacccga cgccgacatc cgcagctcgg
     2521 tgaccagcgg cagggcgacc aggaaggagc ggtggatccg cacgaaaccg gcgtcggacc
     2581 agcggtcctc caactgggac agtgggatac ggaccaggtg actggtccct tcaccggtgt
     2641 gcagccgcgc gtagtcacca tgcgcctcca cccagcgtac cgacgagcgc ggcaccaact
     2701 tcgtggtgcc ggcgagctcg acagggatga cctcatcctc gttgctctgc tcctgcccct
     2761 ggatggtcgc gtcccgccgg gacgctacga tccgacgcat cgtgttggcc agccggtccc
     2821 ggctcaccgg cttcatcagg tagtcggtcg cgccgatctc aaacgcgtcg agggccttct
     2881 cgtcgtatgc ggtggcgaac acgacagccg gcgggttggg gatcgtggcg agcacgcggg
     2941 ccagttcaag gccgtccagc ccaggcatct tgatgtcgag gaacaccaca tcaactcgcg
     3001 gcagcggggt gccgttggga ctgcggctat cgggtcgcaa aatcgacagc gcctcggtgg
     3061 cgttcgtggc cgtcatgatg gtgccgattc gcggctcggc ttcgagcacc tccagcagca
     3121 tcgccatggg tcctggctcg tcgtccacgg cgagcacgac aagcccgggg ttgtcgtcgt
     3181 tgccgctcat tgaccgcctc tccgccgatt tggtgtcccc aattacaccc acggaccatt
     3241 aatcctgcac atggccagga tcgctgtcca cgtttgtcgt gttagagcag gtcccgcgat
     3301 ctttgagtgt gtcaccaact tccttgtcgc cgagttccac atcagcgctg tccgattgtg
     3361 aacccaacag ctctgacgtc gaactcggcc acaggagagc ctcggaggct gcctacaagc
     3421 cgaagcggga ccaggcggcg cggtgctcca gggcgtcgag cacccccagc atggccgcgg
     3481 ctgggacgag gcccaaacgg gcgagcagc
//
LOCUS       DASVXZ010000462         2112 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1573319, whole genome shotgun sequence.
ACCESSION   DASVXZ010000462 DASVXZ010000000
VERSION     DASVXZ010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1573319"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VF788_09525"
     CDS             <1..201
                     /locus_tag="VF788_09525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934417.1"
                     /translation="AATATSVSDFWAKSESLAAALASEAASQLPAQGPDKTTQAITNI
                     YSDRASSINHYFDQLTTEQLTT"
     gene            complement(386..1210)
                     /locus_tag="VF788_09530"
     CDS             complement(386..1210)
                     /locus_tag="VF788_09530"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8934418.1"
                     /translation="MNSADASDRKLPSGVDTSVSRSARVWNYWLGGKDNYPVDHEAGD
                     GFAAILPSIVDVARASRAFLVRAVRYLVAEAGIRQFLDVGTGLPTANNTHQVAQATAP
                     ECRIVYVDNDPMVLVHARALLTSTPEGVTNYVDADLQDTDTVLREAARTLDFTQPVAL
                     MVMGTIEHVMDNDEAYATVNRLLDPLVSGSYLALYDPTTDGVHGKEMFEACRLWNESG
                     GTPPVAVRSSQEIAQFFDRLELIEPGVVSVPLWRPDPNQLGVPAEVNTFGGVGRKP"
     gene            1489..>2112
                     /locus_tag="VF788_09535"
     CDS             1489..>2112
                     /locus_tag="VF788_09535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005460328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934419.1"
                     /translation="MWHGRPTALRIALGGHLRRLREASGITREAAGDTIRASSSKISR
                     LELGRVSSKERDVADLITLYGVTDVEEREILLTLARQANAPGWWREYGDVLPNWFETY
                     LGLEQAASVIRAYEPQLVPGLLQTEDYARAIMLLRHLHMSHSEIERRVALRMARQAFL
                     SQPAAPDLWVALDEAALRRPLGDQKVQQAQLLHLIEMAQRPNITLQIV"
BASE COUNT          408 a          684 c          644 g          376 t
ORIGIN      
        1 gctgcgaccg ccactagcgt ctcggacttc tgggccaagt cggagagcct cgcagctgcc
       61 ctagcgtctg aggcagcgtc ccagctcccc gcccaaggac ccgacaagac cacacaagcg
      121 atcacgaaca tctacagcga ccgggcatcg tcgatcaacc actactttga tcaactcacc
      181 accgagcaac tcaccacttg acccccagct caccatcgac tacgtacggc gtgctggcgg
      241 cgtgctatca gcgccgacca cctcgcatcg cgccagatcg gcgttgacac aggactagaa
      301 ctgctcaccg agccaaaacg gaggtccgtc ccgatcacga gtcgaccatg ccgtccatgc
      361 cattgacgtg ctgtacctgc gcccatcagg gcttgcgtcc gacaccaccg aatgtattca
      421 cttctgcggg cacgccgagc tggttggggt cgggtcgcca cagtggcaca gacaccacac
      481 ccggctctat taactcgagc cggtcaaaga attgggcgat ctcctggctg ctgcggaccg
      541 cgaccggagg cgttccaccg ctctcgttcc aaagtcggca tgcctcgaac atctccttgc
      601 cgtgaacgcc gtcggtcgtg gggtcataca gcgctaggta gctgcccgag accaatgggt
      661 ccagcaggcg gttcacggtc gcgtacgcct cgtcgttgtc catgacgtgt tcgatggtcc
      721 ccatcaccat gagggcgacc ggctgggtga aatccagtgt ccgagcagcc tcccgcagaa
      781 ctgtgtccgt gtcctgcaaa tcggcgtcga cgtaattggt gacaccttct ggagtgctgg
      841 tgagcagggc gcgggcgtgc accaggacca tggggtcgtt gtccacgtag acgatgcggc
      901 actccggagc ggtcgcctga gcgacctggt gggtgttgtt ggcggtgggc aacccggtcc
      961 cgacatcgag gaactgacgg atccctgcct ctgcgaccag gtaccggaca gcgcggacca
     1021 ggaacgcgcg cgaggcgcga gccacatcga cgatgctcgg caggatggcg gcaaatccgt
     1081 caccggcctc atggtcgacc gggtagttgt ccttaccgcc caaccagtag ttccagacgc
     1141 gagccgaacg cgacacgctg gtgtcgacgc cggacggcag tttccggtcg gacgcatctg
     1201 cgctgttcat tccgggcagg gcctctctcc ggtatgtcgc tgggctggac gtgacaccgt
     1261 gactgtagtc gacttcgtgg atggctctca gccctcaaga taaagatctc cagcgattac
     1321 cacagcaacg aacggggggt actctggcac catcgcttga acggttgcat cgccacacgg
     1381 accgccgatc gtggcgaact cgcaaggtgg tttgaggagg ccgccgcgct cacgctaggg
     1441 gaagctttga gagctcaacc agatcgcgat cttcgcacta gtttgacgat gtggcacggg
     1501 aggccaacgg cgctgcgtat cgcgttgggc ggccatctgc gtcgcctgcg agaggccagc
     1561 ggaattaccc gtgaagccgc tggagacaca atccgcgcat ccagcagcaa gatcagccgt
     1621 ctcgaactcg gccgggtctc atccaaggaa cgcgacgtgg ccgatctgat cactctctat
     1681 ggcgtcaccg acgtggaaga acgcgagata cttctcaccc tcgcccggca agccaacgca
     1741 cctggttggt ggcgcgagta tggcgacgtg ttgccgaatt ggttcgagac ctatctcggt
     1801 ctggagcaag ccgcgtcagt catccgcgcc tatgagcccc aacttgtgcc cgggctgctg
     1861 cagaccgagg attacgcacg cgccattatg ctgctgcgcc acctgcacat gtctcacagc
     1921 gagatcgagc ggcgcgtcgc gctccggatg gcccgtcaag cattcttgag tcaacctgcg
     1981 gcgcccgacc tgtgggtggc gctggacgag gccgcgctgc ggcgaccgct gggtgatcaa
     2041 aaggtgcagc aagcgcaact gctgcacctg atcgagatgg cccagcgacc gaacatcaca
     2101 ctgcagatcg tg
//
LOCUS       DASVXZ010000463         6159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1751362, whole genome shotgun sequence.
ACCESSION   DASVXZ010000463 DASVXZ010000000
VERSION     DASVXZ010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6159
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1751362"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /locus_tag="VF788_09540"
     CDS             complement(<1..666)
                     /locus_tag="VF788_09540"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEX8934420.1"
                     /translation="MIAATVTVLEEQTHTIARNSVTVAVWTLVSRVTGVLRVVVIGPV
                     LGATYFANAFQTSYLLPHLVFTLIAGPVLGMVLVPSVVRALAAGGEARARQILGGVSG
                     WLLTVAAVVSALLMILSPAVAWSLNFGIPDPAARARGVWLTTLVVLLVAPQVVLYALV
                     HLGTAALQARGRFALAAGAPVVENIVLIPTVIVAGWYYGTGLDVEHVPVGLVLVLGVG
                     STAA"
     gene            705..962
                     /locus_tag="VF788_09545"
     CDS             705..962
                     /locus_tag="VF788_09545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934421.1"
                     /translation="MSAGATCPLVEHVEPFQHNLPVELAQDVIHLAAFPLSEPRTNPR
                     HKGPGAAAPQRTVLGRMKRVTSRAASIVVPLIGHAHEVSRR"
     gene            complement(1320..2066)
                     /gene="phoU"
                     /locus_tag="VF788_09550"
     CDS             complement(1320..2066)
                     /gene="phoU"
                     /locus_tag="VF788_09550"
                     /inference="COORDINATES: protein motif:HMM:TIGR02135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEX8934422.1"
                     /translation="MAAAEGRRFRPSSRVDIGQIVRATWKQFTSSRAQLPRVEQQTCH
                     AELDSLTGDVASIVRLAGQLMTNASVALHQADLKFAELVISEAEEIKTRCKDADQRCL
                     NLLALGAPVATDLQMVVAAMHVVTDLQRMCNLAQHIAEIARLKHPNDPIAADVRPVSM
                     QMGVLASTLAEDAAAAIESRDPLSAARMAQIDDKVDALRRQIFQILFSKDWSHGVELA
                     VDAALIGRYYERFADHAVAIARKVTLSSPV"
     gene            complement(2283..3053)
                     /locus_tag="VF788_09555"
     CDS             complement(2283..3053)
                     /locus_tag="VF788_09555"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HEX8934423.1"
                     /translation="MEATLHAELGKLITNLARMARLAEQVMTNAAIALHQTDPTLAGV
                     VIAKCDQMTASLANTEQRCIILLARQAPVVESLRVGVAAVRAVDHLKRMANLARHIAI
                     IPQLKHPNPVISSPVRPVLARMSLLASQLAGDAATAIEHRDPLSGDRLAKADEEVNTL
                     HRHLFGILFAEDWSHGVEPAVDAALIGRYYERFADHAVAIAREVRYLVIDRISESDAP
                     NLTSSDEALTHHDDLSSDSRQVAATFPSSTQPPSQRPD"
     gene            3449..5152
                     /locus_tag="VF788_09560"
     CDS             3449..5152
                     /locus_tag="VF788_09560"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX8934424.1"
                     /translation="MPNVGVPERLALWMTVAEQQEWLQSFLRGRRVSRRSALKGGASV
                     LAALGLAGTPWVSAGCGRATQVQAAVVGRHLSFGIDPTTTMAIAGELISKPTGKVLVD
                     LGVGRDYGHIVEAEVRELVSMVPQQDGSIRGADQFFVHALAGGLRAGTSYHYRFRLAD
                     GSTTPDATFRTAPTSSDLQPFTFTAFADQGVNTNPPDGQAGFNDNYYKADDTRRVATP
                     ADSIVALIAAQRPTFHLLAGDICYADPSGTGQPIKNNAPRNADTGFNNFDPTLWTTYF
                     ATIEKSAAHTPWLFATGNHDMEALYDNNTAPGGASHGYAGHAARLDLPANGPSRCPSV
                     YSTVYSNVAIISLDANDLSQEIPTNAGYSAGQQLSWLTDTLRGFRANPSIDFIVAFFH
                     HCAFATSSAHASDGGVRAALVPLLDQFSVDLVVQGHNHQYERTNPIRAGRSTRQAPDQ
                     SSIWPAQDGTTYICVGSGGRPRYGWQPGEGDRYRGGPNPDSGTVVHSYVTGPDGTKAP
                     ETVDWSQSRYLDYAYLSIEVHPAPPGRIASMQVRTRSDLGVEIDRVDLLRFVPSEGRP
                     G"
     gene            complement(5199..5420)
                     /locus_tag="VF788_09565"
     CDS             complement(5199..5420)
                     /locus_tag="VF788_09565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934425.1"
                     /translation="MHLRTACGRTEQQGRHVRIRREYPIRTGTVAGAIPRAAAAPALN
                     WGTKGTSAALLAILIVPVIYQVLHLHRHT"
     gene            complement(5537..5689)
                     /locus_tag="VF788_09570"
     CDS             complement(5537..5689)
                     /locus_tag="VF788_09570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934426.1"
                     /translation="MDFDEIAQTARALRMVIAAIDTGEVVASEAQRAYLANAVEVLAA
                     LAAQDR"
     gene            complement(5961..>6159)
                     /locus_tag="VF788_09575"
     CDS             complement(5961..>6159)
                     /locus_tag="VF788_09575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934427.1"
                     /translation="SSLATAAGLVLHAGLQWALTASGRSAQVVGSAVTPAPSTVTNEP
                     CVVLLRQTITIETWIVRGGRV"
BASE COUNT         1153 a         2015 c         1902 g         1089 t
ORIGIN      
        1 ggccgctgta ctgcctaccc cgaggacgag caccagcccg acgggcacgt gctcgacgtc
       61 taggccggtc ccgtagtacc agccggcgac gatcactgtc ggaatcagga cgatgttctc
      121 caccaccggg gcgcctgccg ccagcgcaaa acgcccccgg gcctgcaggg cggctgtacc
      181 caggtgcacc aatgcgtata gcacgacctg gggggccacc agcagcacca ccaacgtagt
      241 cagccacacc ccccgcgccc gggcagcggg atcggggatc ccgaagttca gcgaccaagc
      301 caccgccggg gagaggatca tcaacaatgc gctcaccaca gccgcaaccg tgagcaacca
      361 tccgcttacc ccacccaaga tttgccgggc acgagcttcg ccaccagcag cgagcgcacg
      421 aaccacgctg ggcaccaaca ccatccccag cactggccca gcgatcaagg tgaacaccag
      481 atgaggaagc aggtagctgg tctggaaagc gttcgcgaaa taagtcgccc ccaacaccgg
      541 accaatgacc accacccgca acaccccggt gaccctgctg accagcgtcc aaacagcgac
      601 ggtaaccgag ttccgcgcga tggtatgggt ttgttcctcg agcaccgtca ccgttgcggc
      661 gatcattgac gggccctcac ggccgcagcg gaggcgggac gctcgtgagc gccggcgcta
      721 cctgcccgct cgtcgaacat gtcgagccgt tccaacacaa cctgccggtg gagctggccc
      781 aggatgtgat ccacctcgcc gccttcccac tgtccgagcc acgtaccaac ccgcggcaca
      841 agggtccggg cgccgcggca ccgcaacgta cagtgttggg ccgtatgaaa cgcgtaacga
      901 gccgggccgc atcgatcgtc gtgcccttga tcggtcatgc ccatgaggta agccgcaggt
      961 aatcagtaac gccagctcga ggttccccgg agaaccggac acttcggatg caggatcagt
     1021 gatcgtgatc tgatcgagtt ccggatacag gagggtagct gcggtcgtcg caattggcct
     1081 gatgtgaaat tcgaccctgc tactggagcc gcgcgaaggt ccgattcttc ccagtcccag
     1141 tttcgtgctt cgaattacga gtctcgatgc ggcgccgccg caccggcagg ctacgagaga
     1201 ttatgcatgc gtcaaatggc tgaatgagac gccaaactct atagacgtgt gtcaacgacg
     1261 gccgcttctg cgtcatcaca agcacgtaag ttgggcgtgc aggtagatta ccgggatggt
     1321 cacaccggcg acgacaaagt aactttgcga gcgatcgcca ccgcgtgatc ggcgaagcgc
     1381 tcgtagtagc ggccaatcag cgcggcgtcc accgccagtt ccaccccgtg tgaccagtcc
     1441 ttagagaaca aaatctggaa tatctggcgg cgtagcgcat ccaccttgtc atcgatctgt
     1501 gccatccggg cagcagagag gggatctcgg ctctcgatcg ctgccgcggc gtcctcggcg
     1561 agggtggacg cgagcacgcc catctgcatg gacaccggac ggacgtcagc cgcgatcggg
     1621 tcgtttgggt gtttcagccg cgcgatctcg gcgatgtgct gggccagatt gcacatccgc
     1681 tgcaggtctg tcaccacgtg catggcggca accaccattt gcaggtctgt ggccaccggt
     1741 gcgcccaggg cgagcagatt aaggcaacgc tgatctgcat ctttgcaccg cgtctttatc
     1801 tcctcggcct cggagatgac caactccgca aatttcaagt cggcctgatg aagcgcgacc
     1861 gaggcgttgg tcatcagctg cccagccagc cgaacgatcg aggctacgtc gccggttagg
     1921 ctgtccagct cggcgtggca ggtctgttgt tcgacccgag gaagttgagc gcgactgctg
     1981 gtgaattgct tccacgtcgc ccggacgatt tgtccgatat cgactctaga gctgggccgg
     2041 aacctgcgac cctcggcagc agccatgatg ccaggatcat cccctccagc tgtgctgtcc
     2101 acgtgctgct acagaattca tcagcagttc ccagtgtgct tccacacctt caccccggtc
     2161 ccctagcccc gccggatgac gccggaatga ttgccgcacc cacactgatt cgagcaagca
     2221 ggacagctgg tcaccctccc agccatgggt caacgtgcag gttctcacca tgacgggttt
     2281 gctcagtctg gccgctggct gggtggttgg gtgctggagg ggaatgtggc tgcgacctgt
     2341 cggctgtcac tggagaggtc gtcatgatgc gtgagggctt catcgctgga ggtcaagtta
     2401 ggtgcatcgg actcggatat ccggtcgatg accaggtagc gcacctccct tgcgatggcc
     2461 accgcgtggt cagcgaagcg ctcgtagtag cggccgatga gggcggcgtc gactgctggt
     2521 tctacgccgt gggaccagtc ctcggcgaac agaatgccga acaggtgacg gtgaagcgtg
     2581 ttcacctcct catccgcttt ggccaaccga tcaccggaca acggatctcg atgctcgatc
     2641 gcggtcgcgg cgtccccggc aagctggctg gcgagcaagc tcatccgggc caacaccggg
     2701 cggactgggc tggaaatcac cgggttcggg tgcttgagct ggggaatgat ggcgatgtgc
     2761 cgggcgaggt tggccatccg cttcaaatgg tccaccgcgc gcacggctgc caccccgacc
     2821 cgtaggctct cgacaaccgg ggcctgccgt gcgagcaaaa tgatgcagcg ctgctcggta
     2881 ttggcgagcg acgcggtcat ctggtcacac tttgcgatga ccactccggc aagtgtggga
     2941 tcggtttggt gcagcgcgat cgctgcgttg gtcatcacct gctcggccag gcgggccatc
     3001 ctcgcgaggt tggtaatcag cttaccgagt tcggcgtgga gcgtggcctc cacgatcgtg
     3061 accttccatc cgatactccg tctgaaatat tctgtcgctg cgactgatct tctccatggc
     3121 agtggatact ttaccgactt gcttagcaca cgagaagaga ggctaaaggg cctcgataga
     3181 agctatgacg ctcgcggcgc ctatcaccgc atggtacacc acgaacacga ttcgtgaccc
     3241 tgattcggcg tcgcggatga catgctgtga ttgtgcagag cataagggaa gggtgagaag
     3301 cggcggtgat ccgcatgtcg cgccatgtcc tgcctctgga ccgtcgcgag gaagcgaaca
     3361 attcatccag tcttagtcgt gtgttgtgtc agcggagatg gtgggggcgg gcatgttgtc
     3421 atgcatggtc gtgtgcccgc ctggggaggt gccgaacgtc ggtgttcccg agcgccttgc
     3481 gctgtggatg acggttgcgg agcagcagga gtggctgcaa tcgttcctgc ggggccggcg
     3541 cgtcagccgg cggtccgcgc tgaagggggg tgccagcgtg ctggccgcgc tgggtttggc
     3601 cggcacccca tgggtctcgg ctggatgtgg ccgcgccaca caagtgcagg ccgcggtcgt
     3661 ggggcggcac ctgtcctttg ggatagaccc gaccacgacg atggcgatcg ccggcgagct
     3721 gatcagcaag ccgaccggga aagtactcgt cgatctgggg gtcggtcgcg actacgggca
     3781 tattgtcgag gcagaggtcc gggaactggt cagcatggtg ccgcagcagg acgggagtat
     3841 ccgtggggct gatcagtttt tcgtccacgc gctggcgggt gggctgcgcg ccggtacttc
     3901 ataccactac cggttcaggc tggcggacgg ctccacaacg cccgacgcga cattccgcac
     3961 cgcgccgacc agcagtgatc ttcagccgtt tacctttacc gcctttgccg atcaaggcgt
     4021 caacaccaac ccgccggatg gccaagcagg cttcaacgac aactattaca aggccgacga
     4081 cacccggcgg gtagccacac cggccgactc gatagtcgcg ttgatcgccg cgcagcggcc
     4141 cacctttcac ttgctggccg gtgatatctg ctacgccgac cccagtggta ccggtcaacc
     4201 catcaagaac aacgcaccac gcaacgccga caccggattc aacaacttcg accccaccct
     4261 atggacaacg tacttcgcca ccatcgaaaa aagcgccgcg cacacaccgt ggttgttcgc
     4321 caccggcaac cacgacatgg aagcgctcta cgacaacaac accgcacccg ggggtgccag
     4381 ccacggctac gcgggacacg ccgcgcggct ggacctgccc gcgaacggac cgagccgctg
     4441 cccgtctgtc tactccacgg tctacagcaa cgtcgcgatc atcagccttg acgccaacga
     4501 cctgtcccag gagatcccta ccaacgccgg ctacagcgca gggcaacaac tcagctggct
     4561 gaccgacacc ctcagagggt tccgggcgaa tccctccatc gacttcatcg tcgccttctt
     4621 ccaccattgc gcgttcgcca ccagcagcgc gcacgcctcc gacggcgggg tacgggcagc
     4681 gctggtgccg ctcctcgacc agttttccgt ggacctggtg gtgcagggcc acaaccacca
     4741 gtacgagcga accaacccca tccgcgccgg caggtccacc aggcaggcac ctgaccaatc
     4801 ctccatctgg ccagcgcaag acggcaccac ctacatctgc gtaggttccg gtggccggcc
     4861 acgctacggc tggcaacctg gtgaaggcga ccgctaccgt ggcggcccca accccgacag
     4921 cggcacggtg gtacatagct acgtgactgg cccagatggg acgaaagccc cggagaccgt
     4981 cgactggtca caaagccgct accttgacta cgcctacctc agcatcgagg tgcatcccgc
     5041 accgccgggc cgcatcgcct ccatgcaagt aaggacccgt agcgacctcg gcgtcgaaat
     5101 cgaccgcgtc gacctgcttc gtttcgtccc atcggagggt cgcccaggct gagccgcgtc
     5161 gtcgggtgtg tcccggcttg gcaggggcgc tgttcggctc aagtgtggcg gtgcaggtgc
     5221 aggacctggt agatcaccgg cacgatcagg attgctaata gtgctgcgga ggtgcccttg
     5281 gtgccccagt tcagcgccgg agcagcggcc gcacggggaa ttgcaccagc gacagtgccg
     5341 gtgcggatcg ggtactctcg tcgaattctt acgtgccgcc cctgctgctc cgttcggccg
     5401 cacgccgtcc tcaggtgcaa cgactcctat cttggcgtgt tcagctggta agactagctg
     5461 agtaccagca actcgctgtt gagtagcgcc ggactgggaa cccgacacaa cgctttccac
     5521 atttgcacag agcgagtcag cggtcttgtg cagccagtgc agcgagcact tcgaccgcat
     5581 tcgccaggta cgcacgctgc gcctcgctcg cgaccacctc cccggtgtcg atagcagcga
     5641 tcaccattcg tagtgctcgt gcggtctgag ctatctcgtc gaagtccata gcgacgatcg
     5701 ttctacgctg gctgcccgat tgtcacgctc agctgttgta gtgatagctg cggcaccatc
     5761 cggcgtggcg cagctacccg caccgatcca tggcgtcggc gcgatgccgc gagcttgagc
     5821 ggtctgagcg ccgggcccgc ggcagcggtg ggtttaaacg atcccgctgg cccgtggcgt
     5881 tcgcgcgtcc ctgcctgcgc ccgttcagca cgcggtcgga cgccttttcg ccagccactt
     5941 ccggccgaaa ggcagcccgc tcagacccgg ccgccacgca cgatccacgt ctcaatcgtt
     6001 atggtctggc gcaagagcac tacgcagggc tcgttggtca ccgtggaagg cgccggggtg
     6061 acggcggatc cgacgacctg tgccgatcgg cccgacgccg tcagcgccca ttgcaggcca
     6121 gcgtgaagca ccaaccctgc ggcggtggcc agggagctc
//
LOCUS       DASVXZ010000464         3695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_408370, whole genome shotgun sequence.
ACCESSION   DASVXZ010000464 DASVXZ010000000
VERSION     DASVXZ010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408370"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..997)
                     /locus_tag="VF788_09580"
     CDS             complement(<1..997)
                     /locus_tag="VF788_09580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0046500 - S-adenosylmethionine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_0568 family radical SAM protein"
                     /protein_id="HEX8934428.1"
                     /translation="MGVGTGGLATRVDIAVRGVRMDAPVRRPDGAGPSDDGHVLVGGV
                     NAALPRNPDSPYRMHDGRIFLGELDTGVSLQLVNRPRFYDLTTTDGVPYEQIARLHGS
                     DVLATTVVQTCIRYAEDQRCRFCTIEESLRSGATIAAKTPAQLAEVAEVAVRLDGIRQ
                     MVMTTGTTAGPDRGARYLVRCVKAVVQAVPGLPIQVQIEPPRELSVLTDLHQAGATAI
                     GIHVESLNDEVRRRWMPGKGSVSMAEYEAAWDEAVRVFGRNRVSTYLLVGLGEDPDEL
                     VAGASRLIKRGVYPFVVPFRPMVDTLARRDGIGAPAAHLVRDVTERVAAMLREAGM"
     gene            complement(1078..1590)
                     /locus_tag="VF788_09585"
     CDS             complement(1078..1590)
                     /locus_tag="VF788_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_0572/Sll0783 family nitrogen starvation
                     response protein"
                     /protein_id="HEX8934429.1"
                     /translation="MADMTDIEKQSLEEIPHPSLPEGSSIYGGTKVFPDYQADNGETY
                     FTLVHGIAHESSVSFVAILQATRAQRKGFESAIYFYGPGSLNCLATRGFPTTGNSAFP
                     GEHNINDSLKTFMKEGGKVYCCRFGLSLHGAREEDLLEGVIPTHPLDVQDALIHYARK
                     GAIINSTYMF"
     gene            complement(1616..2446)
                     /locus_tag="VF788_09590"
     CDS             complement(1616..2446)
                     /locus_tag="VF788_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX8934430.1"
                     /translation="MTTMPAIVDAHRHLGALPAFPFYGGPAVNPDTTARATIAELISD
                     LDAEGTERALVIPNYGVPEPEIAFSFNELVIEAAQTDDRISAALWVSPKPTDAEATAK
                     ALGLAGEPGVRALKLSFLLGGRVTDAACAPQLEEIFDVARQHDLVVHVHTSPGGGSDI
                     DEISHLVENYGDQVAIHLVHFGGGMSGHIKLAGGRFFDWIAAGKRVYTDLSWSIGFAP
                     RWLVREIERRGMGHDRILFASDQPWGDFAGELAKLRAATGDGELARRVFHDTFEELYG
                     "
     gene            complement(2443..>3695)
                     /locus_tag="VF788_09595"
     CDS             complement(2443..>3695)
                     /locus_tag="VF788_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MSMEG_0569 family flavin-dependent
                     oxidoreductase"
                     /protein_id="HEX8934431.1"
                     /translation="RGIDHVVLERDRVGREWRERRWDSFCLVTPNWQCQLPDFPYTGH
                     DPDGFMARDEIVRYIENYAESFSSPVIEGVEATRSCHDRRGRYLVGTSRGELIAEQVV
                     LATGPYQVPLIPRLADRLPDELMQLHSSQYRHPDQLPGGEVLVVGTGQSGCQIAEDLH
                     LAGRQVHLAVGSAPRVARFYRGRDVVAWLDALGYYRKAVDEFADADAVRFRVNHYVTG
                     RGGGRDIDLRAFARDGMRLYGRLTAVSSTAASGTTLRFAPDLAKNLDHADAVSESIKD
                     SIDSFIDSRRIDAPPQARYTPVWAPESEPTHVDLGDTGITSVIWSTGFGRDDRWIEVP
                     VFDGRGYPTHDRGVTSSPGLYFLGLPWQHTWGSGRLSGVAEDAAYLTERITTGPDHVY
                     RWIAGTSASTFPRDDEWVAPRTVA"
BASE COUNT          620 a         1244 c         1189 g          642 t
ORIGIN      
        1 tcatgcctgc ctcgcgcagc attgcggcga ctcgctcggt gacgtcgcgg accaggtggg
       61 cggccggcgc gccgatcccg tcccggcggg ccagtgtgtc gaccatcggc cggaacggga
      121 ccacgaacgg gtacacgcca cgcttgatca accggctcgc gccggcgacc agctcgtcgg
      181 ggtcctcgcc caaacccacc agcaggtagg tggacacccg gttgcggccg aacacccgca
      241 ccgcctcgtc ccacgccgcc tcgtactccg ccatcgacac tgaccccttg cccggcatcc
      301 accgccgccg cacctcgtcg ttgagcgact cgacgtggat cccgattgcg gtcgcgccgg
      361 cctggtgtag atcggtcagc acgctcagct cgcgtggtgg ctcgatctgg acctggatag
      421 gcaggccggg caccgcttgc accaccgcct tgacgcagcg gacgaggtag cgggcgccac
      481 ggtccgggcc tgccgtggtg cctgttgtca tcaccatctg ccggattccg tccagccgta
      541 ctgccacttc ggccacctcg gccagctgag ccggggtctt ggcggcgatg gtggcaccgg
      601 atcgcagtga ttcctctatc gtgcagaacc ggcagcgctg gtcttcggcg taccggatgc
      661 aggtctgcac cactgtcgtg gccagcacat cggaaccgtg caatcgggcg atctgttcat
      721 agggcacacc gtcagtggtg gtcaggtcgt agaatcgggg ccggttgacg agctgcagcg
      781 acaccccggt atccagctcc ccgaggaaga tccggccgtc gtgcatccgg tacgggctat
      841 ccgggttgcg gggcagcgcg gcgttgacac cgccgacgag cacatgcccg tcatcgctgg
      901 gccccgcccc gtccggccga cgcaccggcg cgtccatccg cactccgcgc acagcgatat
      961 caacccgagt agccaaccca ccggtgccga cgcccatcac cgcctccgat cttgtctggg
     1021 tgcgccctca gtgccccgac ctcaacagct ctgctgttga ggtcggggac aacagggtta
     1081 gaacatgtag gtggagttga tgatggcgcc cttgcgggcg taatggatca atgcgtcctg
     1141 cacgtccaag ggatgcgttg ggatgacccc ctccagcagg tcttcctcac gggcgccatg
     1201 cagggaaagg ccgaatcggc agcagtacac ttttccgccc tctttcatga acgtcttgag
     1261 cgagtcgttg atgttgtgct cgccgggaaa cgccgagttt cccgtagtag ggaagccgcg
     1321 ggtggccagg cagttcagcg acccgggacc gtagaaatag atcgccgact cgaatccttt
     1381 gcgctgcgca cgggtagcct gcaggatcgc cacgaagctg accgacgatt cgtgcgcgat
     1441 tccgtgcacg agtgtgaagt aggtttcgcc gttatcggcc tggtagtccg gaaatacctt
     1501 ggttccgccg tagatgctgg acccctccgg caatgacggg tgcgggatct cctcgaggct
     1561 ctgcttctcg atgtcggtca tatcggccat gtgacgcctc ctcatcagtt tggtcttatc
     1621 cgtagagttc ttcgaaggtg tcgtgaaaca cccgcctggc aagctcgccg tcgccggtgg
     1681 cggcgcgcag ctttgccagc tcaccggcga aatcgcccca gggctggtcg ctggcaaaca
     1741 ggatccggtc gtggcccatt ccgcgccgct cgatctcgcg gacgagccag cgcggggcga
     1801 atccgatgga ccacgacaga tcggtgtaga cccgtttgcc cgcagcgatc cagtcgaaga
     1861 accggccgcc ggccagcttg atgtggccgc tcatcccgcc gccgaagtgc accaggtgga
     1921 tcgccacttg gtcgccgtaa ttctcgacca ggtggctgat ctcgtcgatg tccgagccgc
     1981 cgccgggaga ggtgtgcacg tgcaccacaa gatcgtgttg ccgggcgacg tcgaagatct
     2041 cctcgagctg cggcgcgcac gccgcgtcgg tgacccgacc gccgagcagg aaactcaact
     2101 tcaacgcccg caccccaggc tcaccggcca accccagcgc cttcgcggtt gcctcggcgt
     2161 cagtgggttt cggggatacc cacagcgctg ccgagatccg gtcatcggtc tgagcggcct
     2221 cgatcaccaa ctcgttgaac gagaaggcga tctccggttc cggcacgccg tagttcggga
     2281 tgaccagcgc ccgctcggtg ccctcggcat ccagatccga gatgagttcg gcgatggtgg
     2341 ctctcgcggt cgtatcggga ttgacggcag ggccgccata gaacgggaat gcgggtagcg
     2401 cacccaggtg ccggtgcgcg tcgacgatcg cgggcatggt cgtcatgcca ccgtgcgggg
     2461 ggcgacccac tcatcgtccc ggggaaacgt gctggccgac gtaccggcaa tccaccgata
     2521 cacgtggtca gggccggtcg tgatccgctc ggtgaggtat gcggcgtcct cggccacccc
     2581 ggacagtcgg cccgatcccc aggtgtgctg ccagggcaac ccgaggaaat acaggcccgg
     2641 gctgctggtg acgccccgat catgcgtcgg gtaaccacgg ccatcgaaca ccggaacctc
     2701 gatccaccga tcgtcccggc cgaagccggt actccagatc accgaggtga tcccggtatc
     2761 gccaaggtcc acgtgggtgg gctccgactc gggtgcccac accggcgtgt agcgcgcctg
     2821 cggcggggcg tcgatgcggc gcgaatcgat gaagctgtcg atggagtctt tgatgctctc
     2881 cgataccgca tccgcatgat ccaggttctt cgccaggtct ggcgcgaagc gcaaggtcgt
     2941 accggacgct gccgtactgg acaccgcggt caggcggccg tagagccgca taccgtcgcg
     3001 ggcgaacgcc cgtaggtcga tgtcccggcc accaccgcga ccggtgacat agtggttcac
     3061 ccggaaccgg accgcgtcgg catcggcgaa ctcgtccacc gctttgcggt agtagcccag
     3121 cgcgtccagc caggccacaa cgtcgcgacc gcggtagaac cgggccactc ggggagcgct
     3181 accgaccgcg agatgcacct ggcgacccgc tagatggagg tcctcggcga tctggcaacc
     3241 cgactgaccg gtgccgacca ccagcacctc gccgcctggt agttggtcgg gatggcggta
     3301 ttgcgacgag tgcagctgca tcagttcgtc gggtagccga tcggccaggc gggggatcag
     3361 cggcacttgg tagggcccgg ttgccagcac aacctgttcc gctatcagct cgccgcggct
     3421 ggtgccgacc aggtaacggc ccctccggtc gtggcacgat cgggtcgcct cgaccccctc
     3481 gatgactggt gagctgaagg actccgcgta attctcgata taccgcacaa tctcatcgcg
     3541 agccatgaaa ccgtccgggt catgtcctgt gtaagggaag tcgggtagtt gacattgcca
     3601 gttcggtgtc accaggcaga acgaatccca tcgccgttct cgccactctc ggccgactcg
     3661 atcacgctcc aggacaacgt ggtcgatgcc gcgct
//
LOCUS       DASVXZ010000465         1883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1279653, whole genome shotgun sequence.
ACCESSION   DASVXZ010000465 DASVXZ010000000
VERSION     DASVXZ010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1279653"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..511
                     /locus_tag="VF788_09600"
     CDS             176..511
                     /locus_tag="VF788_09600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934432.1"
                     /translation="MDPTACETNDSPPSITDNNATGPLEVIRDAIADIDKAHNVAIAA
                     VEAAQDPVTAFAGAKELAAHMQALAEADSKLREQLSGRIRDVEKLSLAGLGDRAGMSA
                     ADTDKDPLV"
     gene            complement(602..745)
                     /locus_tag="VF788_09605"
     CDS             complement(602..745)
                     /locus_tag="VF788_09605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934433.1"
                     /translation="MTSPSVPALPDPETVRLQRVLKDVRFCLERGDWQTALATARAAL
                     IRD"
BASE COUNT          400 a          577 c          564 g          342 t
ORIGIN      
        1 cctggcgcaa ctcgcgccgg cccaggccga gacccaaccc ccacacagga tcaacctggc
       61 cggtcaccaa atgcaccgca gatcggtcct tgacggactt atcaacgagt actacatcgc
      121 agcgtgatca aagacacacg cccataacct gccggtcaag cccaaaatct tatatttgga
      181 ccccacagca tgcgagacca acgactcacc gccgagcatc accgacaaca acgcaacagg
      241 gccactcgag gtgatccgcg acgcgatcgc cgatattgac aaagcgcata acgtggccat
      301 cgctgcggtc gaagcggcac aagacccggt gactgctttc gctggggcga aagaactagc
      361 cgcccatatg caggctctag ccgaagccga ttccaaactt cgagaacagc tctccgggcg
      421 cattagggac gtcgagaagc tctcgctggc gggtctaggt gaccgggctg ggatgtccgc
      481 cgcggacacg gacaaagatc cgctcgtatg accacggaag gcacgtgatc ggagccggtt
      541 gacagagtcg gttgcggacg acacgcatgg tgaccgagat cgtgcgcgtc gcagtaatag
      601 cttagtcgcg gatcaatgca gcgcgggccg ttgccagcgc ggtttgccag tcgccccgct
      661 ctaggcaaaa ccgcacatct ttcaacactc gctgcaaccg gactgtttcc gggtcgggca
      721 gcgcaggaac agacggggaa gtcataatgc accctccaag gccaggtggc ttaggaccat
      781 gtccaaaaac ctcggtaagt tctctacggt cttcaggtcc ctaagtcttg tagataaacg
      841 agccacgtag gtcggtatag cttcatggca ggtatcaccg ttgttttgac ggtggataac
      901 ggctgctggc cgatcttatg gttggtcacc agctgctggc ccacacgagg agttcgtcgt
      961 tgtgaacgac cgtccggccc tgctgagcag gtgacgtctt accgtactga cgccggcctc
     1021 gggtgaacag ttccccgggt aggggcttgt gcctgccgca tggtgacggc ccggcgggac
     1081 aggatacggg gatccttgcc cgtcaaaccg cgatactacc gacaccacct gagcctgggg
     1141 ttagagtctc cttagcagca tcgtaggcca gggatgggcc agtcttaggc taacgttcga
     1201 acagcagtcg gccgccgagg aaaccaccct gtcaccagct agtgggaccc gatgcctgct
     1261 caccgactgg tccagcggcg gcatcgacca cggcgaggcg ctccgaaagc tgtgtctcac
     1321 cctcgccgag gactgctacg gcgccaagcg ttgccggtta gcgatagtag gcagccaggc
     1381 tatgccgggt ggtgccggtg cccgaatccc agatctgcac catcgctggc ggaggtcagc
     1441 acaagcctgt gggtgccgca tggtcaatca cgtcatgcgg cttggccata atcgttgatc
     1501 agtctgccga gagcgaccct gatcgagcaa ccagtggcgc gatcatcgcg gccgacgtgc
     1561 cgatccgtcc accgcggtcg tgcggtggcc ctggagggca tgatcatcgt ctgcgctggt
     1621 gcgtgacgaa ctacgtgaca atcaccacgt acgaccacgg acttccgtgg atcctgaggg
     1681 acgcctgaac agtccaaacc cgctgaaatg cgctggtcag agcactgttg ttattgcttc
     1741 gggacgaaga ggccgtgggt tcaaatcccg ccacccctac agcaaaacac caggtcagag
     1801 ggctgcgcga tcgagtagcg acggtcttgg gtgacgaact gcgtgactat cggattctct
     1861 tcacgtggtg catccctgcc gtt
//
LOCUS       DASVXZ010000466         5178 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_856949, whole genome shotgun sequence.
ACCESSION   DASVXZ010000466 DASVXZ010000000
VERSION     DASVXZ010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5178
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856949"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VF788_09610"
     CDS             <1..409
                     /locus_tag="VF788_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934434.1"
                     /translation="GGKTITDERRRITSRRQNEAKTAVRRYIDDVIFQASKESRDMLR
                     RVQRDLRDHFTNQAEEMNRSLGDSVRAAERSVKISQAERDRRVAEIKFELDRLESLQQ
                     KIRTLAPQLTSTLLTAERQALPMTERQALTGRS"
     gene            463..1968
                     /locus_tag="VF788_09615"
     CDS             463..1968
                     /locus_tag="VF788_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEX8934435.1"
                     /translation="MTVRGVLRRAVDVYRDQPQTAQRLRHQLDRLDEPLRVAIAGKVK
                     AGKSTLLNALVGELIAPTDAGECTRVVTWYCDGHSPKIVMDPKEGSPAQLPVNRRDGA
                     LIIDMQGAPAESLNRLVVHWPSPSLRDTTLIDTPGIASMSTGTSRRTVSFLSPEDDSP
                     TEADAVIYLMRHLHATDAEFLESFRDRRVGRASSVNTVAVLSRADEIGAGRVDAMFSA
                     KTIAQRYRKDPTLSGLCQGVVPVAGLLAQTGRTLRQAEFDTLAALARRPREEVDRLLL
                     STDRFLRAASDADAVTQPGGSSEARSRLLARFGLFGLRLSMTLIRQGTDGPAALADEL
                     VRRSGLDELRELLNTQFTERRDLLKARSALLALTAVLHENTRADTGNLVGEVERILAG
                     AHEFAELRLLSVLRSGAISLPTLELDEAERLLGGSGGAAAVRLGQPPSSGTEELRKAA
                     LEALSRWRRRGENPLSSRAVADACRVVVRSCEGMVARLTGSQGASDGPGDR"
     gene            complement(1945..3399)
                     /locus_tag="VF788_09620"
     CDS             complement(1945..3399)
                     /locus_tag="VF788_09620"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934436.1"
                     /translation="MAAAVLAHRGLAARSAELYCSLPAGAAGSALLAVPALIGTGELA
                     QAHAVLDAADAGSHGSASLLAGAAVLMAQGILTTVTGTSTTALSQLARAALLLEPAGE
                     TVLLPDTPAALTAVVALQCGELTVADSTLRNAVAAKLGGRPAHPRHMLLHGWVAMTRG
                     RLEAARRSLDWADRQTTPLEPRDEVIAAALAVSVARRENDSAAVASAWWRARCALVRY
                     PIDLYVLQPLGELAIAAARLGEREWITPHLKEAENLLDKLSNPALWAVPLHWCELHAA
                     IVAQQLPDAQRHAAALIDAASSSPYAAALATAAGSWLAVLSSEIDPDTVQTAAQDLHG
                     VGLVWEAAQLAGQAAARTADRRAMTALLNCARTLHGNIPSGPSSSPASAVLDTGQMEV
                     VHARAEAVHPVAAGAAGAAGNGSLEARSVLSERELEVGQLILDGLTHKQIGERLYISA
                     KTVEHHMARIRQRLGVGNRNELFDSLRSAIAGSV"
     gene            complement(3288..4604)
                     /locus_tag="VF788_09625"
     CDS             complement(3288..4604)
                     /locus_tag="VF788_09625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934437.1"
                     /translation="MVRPQSAPPDPAVVGMPPAAAWIYRQIAAAPSTPLTAAVVGPGS
                     TGKSVLLDAVAREYQKAGATVIRGGSSAELSIDTLDPGEPVLVDDAHRLDSATLEGLR
                     SLTEGNATRLIVAYRPWPRSRELSALGACLARRRSPVILGHLDRNAVGARIAARVGCT
                     PPDSLIDLVLEQSGGLPSLVGLVTQALQDTGRFDPRRPDQFRRPERVNVSPGLAERLR
                     YQLEALDPAIYRLLQAMAVGAALDPDVLAQLLDVDPAGLNDTVQATLATGLLTEAGEL
                     ITFVRNIVLRLMPMLHCREMQQRLANIQLDRGGSVLAAGRQLLGTGASGSRVAAVLER
                     AGDEALRESPALAAQLFTGAFDAGTSSKALAARHARQPRLPVISTKHFGWRTRSSRTP
                     SRPTGNWGSRWPPPSSRIVGSPLAVRSYIAACPPVLRVVHCLRCPR"
     gene            4867..>5178
                     /locus_tag="VF788_09630"
     CDS             4867..>5178
                     /locus_tag="VF788_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8934438.1"
                     /translation="MTYALGVDVGTSFTAAAIWRPDDQQHKAEVVALSGRMPSVSSVL
                     FLAADGSVVVGEAAERRALTDPERVVREFKRRIGDDTPLLVGGQPYEAHDLAAMMVRW
                     VV"
BASE COUNT          875 a         1693 c         1797 g          813 t
ORIGIN      
        1 gggcggcaag acgatcaccg atgagcgccg ccgtatcacc agccggcggc agaacgaggc
       61 gaagacggcg gtgcgtcgat acatcgacga cgtgatcttc caagcgagca aggagtcccg
      121 ggacatgctc cggcgggtgc agcgcgatct gcgggatcac ttcaccaacc aagcagagga
      181 gatgaaccgt tcgctcgggg actcggtgcg agccgccgag agatcggtga agatctccca
      241 agcggagcgg gaccggcggg tggccgagat caagttcgaa ttggaccggc tggagtcgct
      301 gcagcagaag atccggacgc tggcgcccca gctcacatcg acgctgctca cggccgagcg
      361 ccaggcgctg ccgatgaccg agcgccaggc gctgaccggg cgaagttgat gggcggtcca
      421 gcacagtcag gggggcaggt gggcagccag cgcagcttgt cgatgaccgt ccgcggggtg
      481 ctccggcggg cggtcgacgt ctaccgcgac caaccgcaga ccgcgcagcg gctgcgtcac
      541 cagctggaca ggctcgatga gccgctacgg gtcgcgatcg ccggcaaggt caaggctggc
      601 aagtcgacac tgctcaatgc tttggtcggc gaactgatag caccgaccga tgccggagag
      661 tgcacccggg tggtcacgtg gtactgcgac gggcacagtc caaagatcgt gatggatccc
      721 aaggaggggt cgcccgctca gctgccggtg aaccgtcggg acggggcact gatcatcgat
      781 atgcagggcg ccccggcgga gtcgctgaac cgtctggtgg tgcattggcc ctcgccgagc
      841 ctgcgagaca ccaccttgat tgacacaccg gggatcgcgt cgatgtccac aggcacctct
      901 cggcgcaccg tcagctttct ctcgccagag gacgactcgc cgaccgaggc cgacgcggtg
      961 atctacctga tgcgtcatct gcacgccact gacgccgaat tcctggagtc gttccgtgac
     1021 cgcagagttg gtcgagcgag ttcggtcaac accgtcgctg tgctctcccg cgccgacgag
     1081 attggtgctg gcagggtcga cgcgatgttc tcagcgaaga ccatcgcgca gcgctaccgg
     1141 aaagacccca cgctgagcgg gctgtgccaa ggggtggtac cggtggcagg actgcttgcg
     1201 caaactggtc gcacgcttcg gcaggctgaa tttgacacgc tggccgcgct ggcccgacgt
     1261 ccacgggagg aagtggacag gttactgctg tccaccgacc gcttcctccg ggctgcttcc
     1321 gatgccgatg cggtgaccca gccggggggg agttcagagg ccaggtccag gctgcttgcc
     1381 cgtttcggac tgttcggact ccggttgtcg atgaccctta tcagacaggg cacagatggc
     1441 ccggccgcac ttgccgacga actggtacgt cgcagcgggc tcgacgagct gcgggaactg
     1501 ctgaacacgc agttcaccga gcgtcgcgat ctgctcaagg cccgctcggc cctgctggcg
     1561 ctgaccgccg tcctccatga gaacacccgg gcagacaccg gaaacctggt cggagaggtg
     1621 gaacgcatcc tcgccggggc ccacgagttt gctgagctgc gcttgctgtc agtgctgcga
     1681 tcgggcgcga tctcgctgcc cacgctggag ttggacgagg cggaacgtct actcggtggc
     1741 tccggcggtg ccgcagcagt gcggctcggc cagcctccaa gcagtggcac cgaggagctc
     1801 cggaaggctg cgttggaagc gctcagccgc tggcgtcgac ggggcgagaa cccgctgtcc
     1861 agccgggccg tcgccgacgc gtgccgggtg gtggtgcgca gctgcgaggg catggtggcc
     1921 aggctcacag gttcccaggg agcatcagac ggacccggcg atcgctgatc gcagactgtc
     1981 gaacaattcg ttacgattgc cgacgccgag ccgctgccga atccgcgcca tgtggtgttc
     2041 gaccgttttg gccgaaatgt acagtcgttc cccgatctgc ttgtgggtca ggccgtcgag
     2101 gatgagttgg cccacctcga gctcccgctc actcaggacc gatcgagcct ccaacgatcc
     2161 gttgccggcg gctccggcag ctcccgcggc aaccggatgc acagcttcgg ccctggcatg
     2221 cacgacctcc atctgcccgg tgtccaggac tgccgacgcg ggggagctgg acgggccact
     2281 ggggatattg ccgtgcaagg tccgggcgca gttgagcaat gccgtcatcg cccggcgatc
     2341 ggcggtccgg gccgcagcct gcccggcaag ctgggcagcc tcccatacca gaccgacacc
     2401 gtgcaggtcc tgcgccgcgg tctgcacagt gtccgggtcg atctcgctag agagcaccgc
     2461 cagccagctg cccgccgctg tcgccaacgc agcggcgtaa gggctgctcg atgcagcgtc
     2521 gatcagagct gccgcgtgcc gctgggcatc cgggagctgc tgggcgacga tggccgcgtg
     2581 cagctcgcac cagtgcagtg gcaccgccca cagcgctggg ttgctcagct tgtcgaggag
     2641 gttctcagct tccttcaggt gcggcgtgat ccactcccgt tcgcccagtc tggcggcggc
     2701 tattgcgagc tcgcccagcg gttgcaagac gtaaagatcg atcgggtatc gcactagggc
     2761 acaacgggcc cgccaccacg ctgaagcaac cgcggcggaa tcattctcgc ggcgggctac
     2821 gcttacggcc agggcagcgg cgatgacttc gtcgcgaggt tcgagcggcg tggtctggcg
     2881 gtccgcccag tccagcgagc ggcgtgccgc ctccagcctg ccgcgggtca tcgccaccca
     2941 gccatgtagc agcatatgtc gaggatgcgc gggacggccg ccgagcttgg cggcgacggc
     3001 atttcgcagc gtggagtccg ccaccgtcag ctcaccgcac tggagcgcga ccaccgcggt
     3061 cagcgctgcc ggcgtgtcgg gcagcagcac ggtctcgccc gcgggttcga gaagcaaagc
     3121 agccctggcc agctgggaca gcgcagtagt agatgttccg gtgacggtgg tcagtatccc
     3181 ttgggccatc agtaccgctg cgccggccag cagcgaggca ctgccgtgag agccggcgtc
     3241 cgccgcatcg agtaccgcat gggcttgtgc cagctcccca gttccgatca gcgcgggcac
     3301 cgcaagcaat gcactacccg cagcaccggc gggcaggctg caatatagct ccgcactgcg
     3361 agcggcgagc ccacgatgcg cgaggacggc ggcggccacc tggatcccca gttcccggtc
     3421 gggcgcgacg gggtccgaga tgacctggtc cgccagccga agtgcttggt cgagatcacc
     3481 ggcaagcgcg gttgcctggc atggcgggcc gccagtgcct tcgatgaggt ccccgcgtcg
     3541 aaggctccgg tgaacagctg cgcggcgagc gctggtgact cgcgcagtgc ctcatccccg
     3601 gcccgctcaa gcacggcggc cacccggctg ccactggcgc cggtgcccag cagctgccgc
     3661 ccggccgcga ggactgaccc acccctgtcg agctggatat tggccagccg ctgctgcatt
     3721 tcccggcagt gcagcatcgg catcaagcgc aacacgatgt tgcggacgaa ggtgatcagc
     3781 tcacctgcct cggtaagcag gccggtggcc agcgtggctt gcaccgtgtc gttcagaccg
     3841 gccgggtcga cgtcgagtaa ttgagccagt acgtcggggt ccagggctgc accgacagcc
     3901 atcgcctgca gcaaccggta gatcgcgggg tcaagggcct ccagctggta gcgcaaccgt
     3961 tcagcgaggc caggggagac gttgacccgc tcgggtcgcc tgaactggtc gggacgccgc
     4021 gggtcgaacc tgccggtgtc ctgaagtgcc tgggtgacca gcccgaccag cgacggtaac
     4081 ccgccagact gctcaaggac gaggtcgatc agtgaatcgg gcggagtgca tcccactcgc
     4141 gcggcaatcc gggctccgac ggcgttgcga tccagatggc ccaggatcac cggtgatcgg
     4201 cggcgagcca ggcaggcgcc gagcgctgag agctcgcggg accgaggcca tggccggtac
     4261 gcgacgatga gacgggtcgc gtttccctcg gtgagcgagc gcagaccctc aagcgtcgcg
     4321 gaatccagcc ggtgcgcatc gtcgaccaga acaggctcac ctgggtccaa cgtgtcgatg
     4381 ctgagctcgg ccgaggagcc gccccggatc accgtcgcgc cggccttctg atactcccgc
     4441 gccaccgcgt cgagcagcac cgacttgccg gtgctgcctg gaccgaccac tgcggccgtg
     4501 agcggggtcg acggagcggc cgcgatctga cgatagatcc atgctgctgc tgggggcatg
     4561 ccgacgaccg caggatcagg cggtgcggac tgcggacgaa ccatcctggc ctttcccgta
     4621 actgttcgcg tacgtttgcc aacgcatcga tcggtaccgg gtggcgtccc gttacctcgc
     4681 gatcaccgcg agcagacgtc tcggctacca ggaccggcgc aacccccgcc acctagcggc
     4741 gtctttctag caaagagact tcttgagccg cgatcggggt taacggtggg ttgccacgaa
     4801 gcgatggagc agccgaaggg agccgccatt tggcggaacc cgagccgtgt cgaagggtcg
     4861 tggctggtga cgtacgcact gggagtcgat gtcgggacaa gcttcaccgc ggcggccatc
     4921 tggaggccag atgatcagca gcacaaggcc gaagtagttg cgctgagtgg ccgcatgccg
     4981 tcggtgtcct cggtgctctt cctggctgcg gacggttccg tcgtcgtcgg tgaagccgcc
     5041 gagcgacgag cgctgaccga tcccgagcgc gtggtgcggg aattcaagcg ccggatcggc
     5101 gacgacacgc cgctgcttgt gggtgggcag ccctacgaag cacacgacct agcggcgatg
     5161 atggtccgct gggttgtc
//
LOCUS       DASVXZ010000467         1727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_677218, whole genome shotgun sequence.
ACCESSION   DASVXZ010000467 DASVXZ010000000
VERSION     DASVXZ010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677218"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VF788_09635"
     CDS             complement(<1..246)
                     /locus_tag="VF788_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934439.1"
                     /translation="MATENPTWGHRRVQGELVRLGHRIAASTVWQILHDAGIDLAPRR
                     SGLTWRQFLTAQAKAVLAVDFVHVDTVVLRGIYALIAV"
     gene            complement(264..590)
                     /locus_tag="VF788_09640"
     CDS             complement(264..590)
                     /locus_tag="VF788_09640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEX8934440.1"
                     /translation="MWLSILYQLVRWLLGLTVVLVRRDLSKDAELLVLRHEDAVLRRQ
                     ISRVRYTPADRMWLTALSRLLPRRRWVEVFPVTPVTILAWHRKLVSRKWDYTAHRRPD
                     VPRQQR"
     gene            721..1167
                     /locus_tag="VF788_09645"
                     /pseudo
     CDS             721..1167
                     /locus_tag="VF788_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612232.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1177..>1727)
                     /locus_tag="VF788_09650"
     CDS             complement(1177..>1727)
                     /locus_tag="VF788_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8934441.1"
                     /translation="TGASGCGKTTLLRSLADLWPYAHGTIGRPTAGRALFLPQHPYLP
                     LGGLRTGLTYPQLPHVVGDEQVREALRMVQLGHLEDRIDDEIDWSRILSAGEQQRLGI
                     ARILINRPRLVLLDEATSALDAGLEHALYTLIRTHLPECTLVSVGHRARLTAFHAQFL
                     HLLGDGRWDLTAPVRQRVGHQG"
BASE COUNT          348 a          559 c          541 g          279 t
ORIGIN      
        1 gaccgcgatc agggcgtaga tccctcgcag caccacagtg tcgacatgga cgaagtccac
       61 ggccaggacg gccttggcct gtgcggtgag aaactggcgc caggtgaggc ctgaccggcg
      121 aggtgcgagg tcgatgccgg cgtcgtgcaa gatctgccac acagtggagg cggcgatgcg
      181 gtggccaagg cggaccagtt cgccctgcac gcgccggtgt ccccaggtgg gattctcggt
      241 tgccatgcga atgagctgct tgatcaccgc tgctgtcggg ggacgtccgg tcggcggtgt
      301 gccgtgtagt cccatttccg cgagacaagc ttgcggtgcc aggccaggat cgtgacagga
      361 gtgactggga agacttcgac ccagcggcgg cgcggcaata gccgtgacaa ggcggtcagc
      421 cacattcggt cggcaggcgt gtagcggacc cggctgatct gtcgacgcaa cacggcgtcc
      481 tcgtggcgca agaccagcag ttcggcatcc ttactcagat ctcgacgcac cagcacgaca
      541 gtcagaccga gcagccagcg caccagctga tacaagatcg acagccacat ccggcgatca
      601 tccatgacca accggaacac gaggaccgca ggtcagacgc tacatcgagt attcgagccc
      661 cacacgatct ccaagcccac agagctggcc tacgacatct gccgtgcccg cacaccagtg
      721 ccgctcgccg aactcgtccg cgttgccgga tcccgctggg ctgtggagga aactttccag
      781 ttcgccaaaa acgagaccgg tctggaccac taccaagtcc gccgctacga ctcctggtac
      841 cggcacatca ccctctgcat gctcgccgcc gcgttcctcg ccgtcaccgc ccacaccaac
      901 aactccgcga tcaaaaaggg gcaccaccaa cggcaacgag tacctgatcc ccctgtcctg
      961 caacgaaatc cggcgactgt gggccacact cacccacccc acccattccc aagcccacac
     1021 ccaccactgg tcccactggc gacgaaccca ccagacacac gcaaaacgaa gcccctacca
     1081 gcgacagcgc ttcaaacatc acaaggtgcg gctgccgtat tagtaggtga tcaggatgtg
     1141 ctcggcggtg gtggtgtcgg ggcatagtgc ggccccttag ccttggtgtc ctacgcgttg
     1201 cctgacgggc gcagtcaggt cccaccgtcc gtcgccgagc aggtgtagga actgcgcgtg
     1261 gaatgcggtc agcctggcgc gatggccgac gctgaccagc gtgcattcgg gcaggtgcgt
     1321 acggatcaaa gtgtagagcg cgtgttcgag gcctgcgtcg agtgcggacg tcgcctcatc
     1381 gagcaaaacc aggcgggggc ggttgatcag aatgcgggcg atcccgaggc gctgttgctc
     1441 accagcggac aggatgcggg accaatcgat ctcatcgtcg atacggtctt ccaggtggcc
     1501 tagttggacc attcgtaatg cttcgcgtac ctgctcatcg cccaccacgt ggggaagttg
     1561 cggataggtc agcccggtgc gcagtccacc caaagggagg tagggatgct ggggtaaaaa
     1621 caaagcgcgg cctgcggtgg gtcggcctat cgtgccgtgg gcgtacggcc ataaatccgc
     1681 caggctgcgg agcagggtgg tcttgccgca gccggaggca cccgtga
//
LOCUS       DASVXZ010000468         4812 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_498228, whole genome shotgun sequence.
ACCESSION   DASVXZ010000468 DASVXZ010000000
VERSION     DASVXZ010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4812
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498228"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VF788_09655"
     CDS             <1..278
                     /locus_tag="VF788_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934442.1"
                     /translation="GLTEVGRPPGGDDEEADLHVLRLPLAEAVRQVLTGEIVNASAVA
                     GLLAAHAVLAGPGLGPALIGPAGLRPVGAPWPDRPARFADRRGGTPP"
     gene            275..1390
                     /gene="ald"
                     /locus_tag="VF788_09660"
     CDS             275..1390
                     /gene="ald"
                     /locus_tag="VF788_09660"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEX8934443.1"
                     /translation="MKIGVPRELKIHEYRVALTPAGVLELTRRGHEVLVERGAGAGCA
                     FPDEAYVAAGARVVPLADEVWAEAEMVLKVKEPVPQEYRRMRKGQILFTYLHLAASAE
                     CTTALIDAGIDAVAYETVQLLDGSLPLLAPMSEVAGRMAPQVGAHCLERMQGGRGVLL
                     GGVSGVPAGKVAVLGAGVVGMNAATIALGMQAEVVVLDTNINRLREIDFSYRGHLQTI
                     ASNAYEVEKACVWADLVIGAVLLRGAKAPTLVSHDLVGEMRQGSVLVDIAIDQGGCFA
                     DSRPTTHADPTFTVHNSVFYCVTNMPGAVPHTSTYALTNVTLPYVCALADKGLSKAVQ
                     DDPALARGVNVVRGSIVLAEVAQAHARDYVPLAEALG"
     gene            1387..2337
                     /locus_tag="VF788_09665"
     CDS             1387..2337
                     /locus_tag="VF788_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009037 - tyrosine-based site-specific
                     recombinase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEX8934444.1"
                     /translation="MSADPTRDLPPALAAVISEYLDHLAVERGTSANTLDSYARDLRR
                     YGVFLASAGVAGLATVREEQVTGFLAALRDGTGEHRPLAPSSAARALVAARGLHRFAF
                     REGLVPTDVAAGVHPPSPPKRLPKALGLDDVLRLLEVFPAEGGPRCLRDRALLEFLYS
                     TGARISEAVGLDRDDVDAPARTVLLRGKGGKQRLVPVGRPALAALDAYLVRGRPTFSA
                     RGRGNPAVFLNARGARLSRQSAWAVLREAAARTEIAAAVSPHTLRHSFATHLLEGGAD
                     VRVVQELLGHSSVTTTQVYTLVTVDNLREVYATAHPRARG"
     gene            2448..3371
                     /locus_tag="VF788_09670"
     CDS             2448..3371
                     /locus_tag="VF788_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEX8934445.1"
                     /translation="MSSWASAQQPLVAPTPPISGEDAVLGDAGLGDGIDPTGRPRRAV
                     PQPPPLDRHGPAQVVAICNQKGGVGKTTSTINLGAALAEYGRRVLLVDFDPQGALSVG
                     LGVASQHLDHTIYNLIMEHRVPADEVVQSTSVPGMDLLPSNIDLSAAEVQLVTEVGRE
                     HALGRTLRPLVPHYDFILVDCQPSLGLLTINALACADGVLIPLECEFFSLRGVALLMD
                     TIDKVRDRLNPRLTITGILATMYDPRTLHAREVMARVVEAFGDTVFDAVISRTVRFPE
                     TTVAGEPITRWAPKSSGAKAYRALAREVIAR"
     gene            3368..4201
                     /locus_tag="VF788_09675"
     CDS             3368..4201
                     /locus_tag="VF788_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEX8934446.1"
                     /translation="MTVLDDPVVAPASSPRFTVRLANFEGPFDLLLQLISQQQMDVTE
                     VALHQVTDEFIAHLRVLGDSFDLDETTEFLVVAATLLDLKAARLLPCADVEDEGDLAL
                     LEARDLLFARLLQYRAYKQVAALFAELETAALRRYPRSVGIEDRYAGLLPEVLLGVDA
                     AHFAETAASVFRPKPPPPTVSLEHLHTPRVSVREHAAVLRSWLARDGQASFSSLVADC
                     AHTREVVARFLALLDLYRAAVVVFDQTDPLGELHIRWTGGSEQAAAASAEDGEENEDY
                     R"
     gene            4216..4800
                     /gene="scpB"
                     /locus_tag="VF788_09680"
     CDS             4216..4800
                     /gene="scpB"
                     /locus_tag="VF788_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010697178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEX8934447.1"
                     /translation="MEAPHGAETLPTLHSDDELDAALEALLLVVDSPAGEDVLASALG
                     QPVTRVVEALQRLRDGYAGTGRGIDLRQVAQGWRLHTRDVYAPYVERFLLDGQRARLT
                     RAALETLAVVAYRQPVTRSRVAAVRGVNVDGVMRTLLARGLVEEAGTDPDTHGVLYCT
                     TELFLERLGLSGLDELPPIAPLLPDIDSIDDIPA"
BASE COUNT          721 a         1560 c         1694 g          837 t
ORIGIN      
        1 gcgggctgac cgaggtcggc cggccccccg gtggtgacga cgaggaggcc gacctgcacg
       61 tgctccgatt gccgctggcc gaggcggtgc gccaggtgct gaccggggag atcgtcaatg
      121 cgtcggctgt cgcgggactg ctcgccgcgc acgccgtgct ggctggccca gggcttggtc
      181 cagcgctgat cggcccagcc ggactgcggc cggtcggtgc accgtggccg gaccgcccag
      241 cccggttcgc cgaccgccga ggaggcacgc cgccgtgaag atcggtgtcc ctcgggagct
      301 gaagatccac gagtaccggg ttgcgttgac gcctgccggg gtgctcgagc tgacccgccg
      361 tgggcatgag gtgctggtag aacgcggtgc cggtgccggc tgcgcattcc cggacgaggc
      421 ctacgtggcc gctggcgccc gtgtcgtgcc gctggccgac gaggtgtggg ccgaggctga
      481 gatggtgctc aaggtgaagg agccggtgcc gcaggagtat cgccggatgc gtaagggcca
      541 gatcttgttc acttacctgc acctggccgc gtcggcggag tgcacgactg cgttgatcga
      601 cgccgggatc gacgcggtcg cctacgagac cgtgcagctg ctcgacggct cgctgccgct
      661 gcttgccccg atgagtgagg tcgccgggcg gatggctccg caggtggggg cgcactgctt
      721 ggaacgcatg cagggcgggc gtggagtgct tctcggcggg gtctccgggg tgccggctgg
      781 caaggttgcg gtgctcgggg ccggggtggt ggggatgaat gccgccacca ttgcgctggg
      841 catgcaggcc gaggtggtgg tgctggacac caacatcaac cggttgcgag agatcgactt
      901 cagctaccgg ggccacctgc agaccatcgc gtccaacgcc tacgaggtgg agaaggcctg
      961 cgtgtgggct gacctggtga tcggcgccgt actgctgcgc ggggcgaagg cgcccaccct
     1021 ggtgagccat gacctcgtcg gcgagatgcg ccagggctcg gtgctggtgg acatcgccat
     1081 cgaccagggc gggtgcttcg ctgactcccg tcccaccacc catgccgatc ccaccttcac
     1141 cgtgcacaac tcggtgttct actgcgtgac caacatgccc ggcgcggtac cgcacacctc
     1201 tacgtatgcg ctgaccaacg tcaccttgcc ctacgtctgc gcgctggccg ataaggggtt
     1261 gagcaaggca gtgcaggacg atccagcact agcccgaggt gtgaatgtgg tgcggggctc
     1321 aatagtgctc gccgaggtcg cccaggcgca cgcccgcgac tacgtacctc tggccgaggc
     1381 actcgggtga gtgctgaccc aacccgtgac ctgccgccag cattggctgc ggtgatctcg
     1441 gagtatttgg atcacctcgc ggtggaacga ggaacctcgg ccaacactct cgactcctat
     1501 gcccgggacc tgcgccgtta cggtgttttc ctggcatcgg cgggggtcgc cgggctggcc
     1561 acggtgcggg aggagcaggt gactggattc ctcgcggcgt tacgcgacgg gaccggtgag
     1621 catcgcccgc tggccccctc ctcggcagct cgggccctgg tcgcggctcg cgggctgcac
     1681 cggttcgctt tccgggaagg gctggtaccc actgacgtcg ccgccggtgt gcaccccccg
     1741 agcccaccga agcggctgcc caaggcactc gggctggatg atgtgctacg gctactcgag
     1801 gtgtttcccg ccgagggagg cccgcgctgc ctgcgtgacc gtgcgctgct ggagtttctg
     1861 tactccaccg gcgcgcggat ctccgaagcg gtcgggctgg accgcgacga cgtcgacgcc
     1921 ccggctcgta ctgtgctgct gcgtggtaag ggcggcaagc agcggctggt cccggtgggc
     1981 cgcccggcgc tggccgcgct tgacgcctac cttgttcgcg gccgccccac gttctccgca
     2041 cgagggcggg gaaatccggc ggtgttcctc aacgcccgcg gcgcccggct atcccggcaa
     2101 agcgcgtggg cggtgctccg ggaggctgcg gcgcggaccg agatcgccgc cgcagtgtcc
     2161 ccgcacaccc tgcggcactc cttcgcgact caccttctgg agggcggtgc cgacgtgcgg
     2221 gtggtacaag agctgctcgg gcactcctcg gtgaccacca cgcaggtcta cacgctggta
     2281 acggtggaca acctccgtga ggtttacgcg accgctcatc cgcgagcacg tggttagggc
     2341 gctcgcttac ccggcgaggc gcgttgaagg ctgtttccat cgcggaatag gctcccccgg
     2401 aatcccacca tgctgacctg agatttgggc gagaagggat cggttccatg tcgtcctggg
     2461 cgtctgcgca acaaccgctg gttgcgccga ccccgccgat ctccggtgaa gacgcggttc
     2521 tcggagatgc gggcctcggg gatgggatcg atcccaccgg acgtccacgc cgggcggtgc
     2581 cgcagccgcc cccgctggac cggcacgggc cggcacaggt ggtggccatc tgcaaccaga
     2641 agggcggcgt cggcaagacc acctcgacaa tcaatctcgg ggccgcgctc gccgagtacg
     2701 gtcgccgggt gctgctggtc gacttcgatc cccagggcgc actctcggtc gggctcggcg
     2761 tggcctctca gcaccttgac cacaccatct acaacctgat catggagcac cgagtccccg
     2821 cggacgaggt tgtccagtcg acctcggtac ccggcatgga cctgctgccc agcaacatcg
     2881 atctatccgc ggcagaggtg caactggtca ccgaggtggg tcgcgagcac gcgctgggcc
     2941 ggacgctaag gccactggtg ccgcactatg acttcatcct ggtggactgc cagccgtcgc
     3001 tgggcctact caccatcaat gcactggcct gcgcagatgg tgtgctcatc ccgctggagt
     3061 gcgaattttt cagtctgcgg ggggtggcgc tgctgatgga caccatcgac aaggtccggg
     3121 accggctcaa ccccaggctg acgatcaccg gcattctcgc cacgatgtac gacccgcgca
     3181 cgctgcatgc ccgcgaggtg atggcgcgcg tggtggaggc cttcggtgac accgtgttcg
     3241 acgcggtgat cagccgcacg gttcgcttcc cggagaccac cgtcgccggg gagccgatca
     3301 cccggtgggc gccgaagtcc tccggagcaa aggcgtaccg cgccttggcc cgagaggtga
     3361 tcgcgcgatg accgtgttgg acgatccggt ggtggcaccg gcctcgtcgc ctcgtttcac
     3421 cgtgcggctg gcgaatttcg aaggtccgtt cgacctgctg ttgcagctca tctcgcaaca
     3481 gcagatggac gtgaccgagg tggccctgca ccaggtgacc gacgagttca tcgcgcacct
     3541 gcgggtgctg ggtgattcat tcgacctgga cgagaccact gaattcctcg tagtcgcagc
     3601 gaccttgctg gacctcaagg cggcccgatt gctgccctgt gccgacgtcg aggatgaagg
     3661 tgatttagca ctgctggagg cgcgggacct gctgttcgcg cggttgctgc aataccgggc
     3721 gtacaagcag gtagcggcgc tgttcgcgga gctcgaaacc gcggcgctgc gccgctatcc
     3781 ccgatcggta ggcattgagg acagatacgc cggattgctg cccgaggtat tgctcggcgt
     3841 cgacgctgct catttcgccg aaaccgcagc ctcggtgttc cggcccaagc cgccgccccc
     3901 tacggtgtca ttggagcatc ttcatacccc gcgggtgtcg gtgcgggagc acgccgccgt
     3961 gctccgcagt tggctcgctc gcgatggcca ggcgagtttc agtagtctgg tagccgactg
     4021 tgcgcacacc agagaggtgg tcgctcgctt cctcgctttg ctggatctgt accgtgccgc
     4081 ggtagtggta tttgaccaga ccgacccgct gggcgaattg cacattcggt ggacaggtgg
     4141 ttccgagcag gcggctgccg cgtcggctga ggatggggaa gagaacgagg attaccggtg
     4201 aatgaaaccg cgttgatgga agcaccacac ggggccgaga cactgccaac gctgcacagc
     4261 gacgatgagc tcgatgctgc gctggaggcg ttgcttctcg tggtggattc cccggctggg
     4321 gaggacgtct tggccagcgc actgggtcag ccggtgacca gagtggtcga ggcgctacag
     4381 aggctccggg atggttatgc cggcaccgga cgcggcatcg acctgcgtca ggtggcgcag
     4441 ggatggcggc tgcatacccg agacgtgtac gcaccgtacg tagagcggtt cttgctggac
     4501 gggcagcgtg ccaggctcac cagggccgcc ctggagaccc ttgcggtggt ggcttaccgg
     4561 cagccggtca cccgctcgcg ggtcgccgcg gtgcgcggag taaacgtcga cggagtgatg
     4621 cgcacgctgc tggcccgcgg cctggtcgag gaggcgggaa ccgatccgga cacccacggc
     4681 gtgctgtact gcacgactga gctgttcctg gagcggctcg ggctctccgg gttggacgag
     4741 cttcccccca tcgccccgct cctgcccgac atcgactcca tcgatgacat cccagcttga
     4801 ggtggtctcc ga
//
LOCUS       DASVXZ010000469         7812 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1574296, whole genome shotgun sequence.
ACCESSION   DASVXZ010000469 DASVXZ010000000
VERSION     DASVXZ010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7812
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1574296"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..910)
                     /gene="tatC"
                     /locus_tag="VF788_09685"
     CDS             complement(<1..910)
                     /gene="tatC"
                     /locus_tag="VF788_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEX8934448.1"
                     /translation="MSRVRFAAGGFFAGSGRRRKVNPDGSMTLMEHLYELRNRLFVAL
                     CAIALGGVLGFIWWGVSPFGLPSLGNLLTGPYCALPSTLRLTPNPGRCQLLQTAPFEV
                     FTLRMQVGMAAGAVVTAPVWIYQVWAFITPGLYVKERKFALIFVGTASVLFAAGAVLA
                     YYVVPTGLSFLANLGDGQFITALTGQAYISFLLTMLAVFGLTFELPLLVVMLNRVGVL
                     PYAKLMQWQRGILFGLFVLAAVATPGNDPISMLALAAALIVLFESAVLITRAHDRALA
                     RRRAEQGWDDLDPDEPSPLDHQVEPIP"
     gene            complement(923..1210)
                     /gene="tatA"
                     /locus_tag="VF788_09690"
     CDS             complement(923..1210)
                     /gene="tatA"
                     /locus_tag="VF788_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEX8934449.1"
                     /translation="MGIPSGWELIVLLAVLVLLFGATKLPTAARSIGQSIRIFKAETK
                     SPRSEDPDQTSPPSSEHQSLPASGTATAGVYERTVEDGRVEETRRHDGTIR"
     gene            complement(1249..1503)
                     /locus_tag="VF788_09695"
     CDS             complement(1249..1503)
                     /locus_tag="VF788_09695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934450.1"
                     /translation="MRRVSVIAVPYLISLLAVVLATGALLTVLARLRGPTRRLSEAAR
                     RSRAHFADRIKALTARAAALRMALNRRRRGGDGSRPAPAA"
     gene            complement(1490..2452)
                     /locus_tag="VF788_09700"
     CDS             complement(1490..2452)
                     /locus_tag="VF788_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020501961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HEX8934451.1"
                     /translation="MEGVAARLPRLLALVPYLLVRPGVPIEEVAADFSITVRQLRRDL
                     ELLWMCGLPGYGPGDLIDLSFEGDSVTVTFDAGMRRPLRLSRAEATALVVALRALAET
                     PGVVDAGSMRRALAKIEAAAGQTDGVVLGLATREEGALAAVRDALDHRRALHIRYYTP
                     SRDTVSERSVDPMRLLLVEGRSYLEAWCRAVEGVRLFRLDRIEHVRTLDEPAVPPPHA
                     RPTDVSAGLFRAQPDQRIAVLTLAPDARWVAEYYPVEELIEGEGGTATVRMRYAETGW
                     MVRLVLGLGGDVLVRDPPELAAGVAERALAAVRRSTSATLNEAG"
     gene            complement(2452..3426)
                     /locus_tag="VF788_09705"
     CDS             complement(2452..3426)
                     /locus_tag="VF788_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEX8934452.1"
                     /translation="MATGRAERLVNLVICLLSSRQYLPAERIRRIVPGYADAPSDEAF
                     FRMFERDKAELRDLGVPLETGRTPGFDAGEGYRIARRDYELPEIDLEPDEAAAVALAA
                     RLWDSPQLAEAAHGALLKLRAAGVEVDPEPSMIVQPRVRATEPALIPLITAVQAGQTV
                     TFPHRKHPADPPTARTLEPWGVVSWRGRWYVVGRDRDRDATRCFRISRIVGPVRTLGA
                     AGTVRRPAGLNLLKIVAGSAESPAVVHTARLWLASGCANGLRRHAKVLGRKVLDGVVG
                     DVVAVELPTYDIATRWIAGLGPDAVVLEPAELADAVRARLLAAAGNAG"
     gene            complement(3507..4865)
                     /gene="pafA"
                     /locus_tag="VF788_09710"
     CDS             complement(3507..4865)
                     /gene="pafA"
                     /locus_tag="VF788_09710"
                     /EC_number="6.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA];
                     GO_process: GO:0070490 - protein pupylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Pup--protein ligase"
                     /protein_id="HEX8934453.1"
                     /translation="MQRRIFGIETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSS
                     NVFLRNGSRLYLDVGSHPEYATAECDDLVQLVTHDKAGERILEDLLVDAERRLADEGI
                     GGDIFLFKNNTDSAGNSYGCHENYLVARAGEFSRIADVLLPFLVTRQLVCGAGKVLQT
                     PRGAVYCLSQRAEHIWEGVSSATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSEV
                     TTLLKVGTANLVLEMVEEGVAFRDFTLDNPIRAIREISHDLTGRRGVRLAGGREASAL
                     DIQREYYARAADHIARRGSDPLTDRVMELWDRTLGAVERQDLGLIDREIDWAIKHRLV
                     ERYRAKHRMDLSNPRIAQLDLAYHDIRRGRGLFDLLQRKALVDRVTDDGEIEAAKDTP
                     PATTRAKLRGDFIAAAQAAGRDFTVDWVHLKLNDQAQRTVLCKDPFRAVDERVERLIA
                     SL"
     gene            complement(5016..5831)
                     /gene="prcA"
                     /locus_tag="VF788_09715"
     CDS             complement(5016..5831)
                     /gene="prcA"
                     /locus_tag="VF788_09715"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019809616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005839 - proteasome core complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit alpha"
                     /protein_id="HEX8934454.1"
                     /translation="MTMPFYASVEQVMRDRSELARKGIARGRGVAVLSYSRGVLFVAE
                     NLSTALHKVSEIYDRIGFAAVGRYNEYENLRQAGIRHADFRGYSYDRRDVTGRGLANA
                     YAQTLGTIFSEQQKPFEVELCVAEVGADTDSDQLYHLTYDGSIVDEPDFVVMGGQADV
                     ISTALKESFRQDMDTAEAVAAAVAALSSVSTNVNGAGKRILGVGQLEVAVLDRSRPRR
                     AFRRITGAALTALLTSAGAAPTEEPPDSSPPDAGEDSDGTNGPPASGEPSASS"
     gene            complement(5878..6735)
                     /gene="prcB"
                     /locus_tag="VF788_09720"
     CDS             complement(5878..6735)
                     /gene="prcB"
                     /locus_tag="VF788_09720"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015801070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005839 - proteasome core complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEX8934455.1"
                     /translation="MDQSSVGRYPGAALPASHFMVGSSSFTDFLAAASPELLPGRRVS
                     GVPAGVEPVGRHGTTIVAAIFRGGVLIAGDRRAVAGNLIAQRDMDKVFVVDDYSAVGI
                     AGTAGVAVEMVRLFTVELQHYEKLEGVSLTLNGKANRLAGMVRNNLGGAMQGLAAVPL
                     FVGYDVDAADPDRAGRIVSYDVVGGRYEETLGYHSVGSGSLFARSSLKKLHDPMMEVD
                     AAVRVAMEALYDAADDDTATGGPDPVRQIYPAVVTVTAADGAVRMSDEQAGQVAELVV
                     DARRRKPGG"
     gene            complement(6862..7053)
                     /locus_tag="VF788_09725"
     CDS             complement(6862..7053)
                     /locus_tag="VF788_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005457107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquitin-like protein Pup"
                     /protein_id="HEX8934456.1"
                     /translation="MSQEKVQRQGGGGDDEAAGGAPAGQERREKLGEDVDAILDEIDD
                     VLEENAEDFVRAYVQKGGQ"
     gene            complement(7133..>7812)
                     /locus_tag="VF788_09730"
     CDS             complement(7133..>7812)
                     /locus_tag="VF788_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010310553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019941 - modification-dependent protein
                     catabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="proteasome accessory factor PafA2 family
                     protein"
                     /protein_id="HEX8934457.1"
                     /translation="RLVDAVRAVHTISRDPSLKATVEVAGGRHLTGLDLQRAYHERVA
                     QFFARNGGPDNASESAEHVLSMWGEVLDALARDPMECADRLDWPAKLRLVEGYRARDG
                     LGWASPRLQLVDLQYADVRLHKGLYNRLVARGSMKRLVTEEEVFAAITRPPEDTRAYF
                     RGRCLERYATEVAAASWDSVIFDLGRESLVRIPTLEPLRGTRAHVGALLDASNTAAEL
                     VEALTRG"
BASE COUNT         1408 a         2672 c         2492 g         1240 t
ORIGIN      
        1 aggggatggg ctcgacctgg tgatctagcg gcgaaggctc gtcggggtcg agatcgtccc
       61 aaccctgctc ggcacggcgc cgcgccagag cgcgatcatg cgcccgcgtg atcagcacgg
      121 ctgattcaaa cagcacgatg agcgcggcgg ccagcgccag catagagatc ggatcattgc
      181 ctggagtcgc caccgcagcc agcacgaaaa gcccgaacag gatgccgcgc tgccattgca
      241 tcaacttggc gtacggcagc acgcccaccc gattgagcat taccaccagt agcggcagct
      301 cgaaggtcag gccgaagacc gccaacatgg tcagcaggaa gctgatatag gcctgaccgg
      361 tcagcgcggt gatgaactga ccgtcgccga ggttggccag gaacgacaga ccggtgggca
      421 caacgtagta ggccagcacg gcgcccgccg cgaacaacac actagccgta ccgacgaaga
      481 tcagcgcgaa cttgcgctcc ttgacataca gcccaggggt gatgaatgcc cacacctggt
      541 agatccagac cggagcagtt accaccgcgc ccgcggccat gcccacctgc atccggagcg
      601 tgaaaacctc gaacggagcc gtctgcagca gctggcaccg gcccgggttc ggggtcagcc
      661 gcagcgtcga gggcagtgca cagtatgggc cagtgagcag gttgccgagg ctgggtaggc
      721 cgaagggcga caccccccac cagatgaagc cgaggacccc gccgagcgcg atcgcgcata
      781 acgcgacgaa cagccggtta cgcagctcat acaggtgctc catcagggtc atggagccgt
      841 ctggattcac cttacgccgg cggcctgacc cagcgaagaa acctccagcc gcgaaacgca
      901 cccggctcac caatcctaac cgtcagcgga tggtgccatc gtggcgccgg gtttcttcga
      961 ctcggccgtc ctcgaccgta cgctcgtaga ccccagcggt ggcagttccc gacgccggca
     1021 gggactggtg ctccgaggag ggcgggctcg tctggtcggg gtcctctgaa cgtgggctct
     1081 tggtctcggc cttgaatatc cggatggact gcccgatgga cctggcggcg gtcgggagct
     1141 tggttgcgcc aaatagcagg accagcactg ccaggagcac gatcagctcc cacccagatg
     1201 gaatccccat ggtaagcctc caatcttgca tcaagtgcga gatcgatgct acgcggccgg
     1261 ggccggccgg gagccatccc cgccgcggcg gcgccggttc agagccatcc gcagtgctgc
     1321 cgcacgcgca gttagtgcct taatacggtc ggcgaagtgg gcgcggctac ggcgcgctgc
     1381 ctcggaaagc ctgcgggtcg ggccgcgcaa ccgcgccagc accgtgagca gcgctccggt
     1441 agccagaacc accgccagca gactgatcag gtacggcacg gcaatgacac taacccgcct
     1501 cattcaaggt cgctgaggtg gacctacgca ctgccgcaag ggcccgctca gctacccctg
     1561 cagctagttc gggagggtct cggacgagta cgtcgccgcc taaacccaac accagacgaa
     1621 ccatccagcc ggtctcggca tagcgcatcc gcaccgtcgc ggttccgcct tcaccttcga
     1681 tcagctcctc aaccgggtaa tactcggcaa cccagcgggc atccggagcg agcgtgagca
     1741 ccgcgatgcg ctgatctggc tgggcgcgga acagcccggc ggacacatcg gtaggccggg
     1801 catggggcgg tggcaccgcc ggctcatcca gcgtcctgac gtgttcgatg cggtccagcc
     1861 ggaacagccg caccccttcg acggcgcggc accaggcctc cagataactg cggccttcga
     1921 cgagaagcag gcgcatcgga tccacgctgc gttcgctcac ggtgtcccgg gatggcgtgt
     1981 agtagcggat gtgcagggcg cggcggtggt ccagcgcatc gcgcaccgcc gctagtgcgc
     2041 cctcctctcg ggtcgccagg ccgagcacca caccgtcggt ctgacccgcc gcagcctcga
     2101 tcttggccag ggcgcggcgc atcgatccgg catcgaccac gcctggcgtc tccgccagtg
     2161 cgcgcagcgc cacaaccagc gcggtagcct ccgcacgaga cagccgcagc gggcgtcgca
     2221 tgccggcatc aaaggtgacg gttacgctgt cgccctcgaa ggacaggtcg atgagatcac
     2281 caggcccgta cccgggcagt ccgcacatcc acagcagttc caggtcacgg cgcagctgcc
     2341 ggaccgtgat ggagaaatcg gcggccacct cctcgatggg aaccccgggg cggaccagca
     2401 ggtagggcac cagggccaag agccggggca gccgtgctgc gactccctcc atcagccggc
     2461 gttccccgcg gccgccagca atcgggctcg taccgcgtca gccaactcgg cgggctctaa
     2521 taccacggcg tccggtccga gcccagctat ccatcgggtg gcgatgtcgt aagttggcag
     2581 ttctactgcc accacatcac cgaccacccc gtccaggacc ttgcggccca gcaccttcgc
     2641 gtgcctgcgc aggccgttcg cgcagccgct ggccagccac aatcgcgcgg tgtgcactac
     2701 cgctggggat tccgcggagc ccgcgacgat tttcaagaga ttcaggcccg ccggccgccg
     2761 caccgttccc gcagcgccga gagtgcgtac cggaccgacg atccgggaga tccggaaaca
     2821 gcgggtcgca tcccggtctc gatcacgtcc caccacgtac caacggccac gccaggacac
     2881 cacgccccat ggctcgaggg tgcgcgccgt gggcgggtca gcgggatgtt tacggtgtgg
     2941 gaacgtcacc gtctgaccgg cctgaacagc cgtgatcagg gggatcagcg caggctcggt
     3001 ggctcgtacc cggggctgaa cgatcattga cggctcggga tccacctcca ccccggctgc
     3061 gcgaagcttg agcagggcgc catgcgccgc ctcagccagc tgcggcgaat cccacaggcg
     3121 ggcggctagc gctaccgcgg cggcttcatc aggttcgaga tcgatctccg gcagctcata
     3181 gtcccggcgc gcgatgcggt agccctcgcc ggcgtcgaat cctggagtgc ggccggtctc
     3241 cagcgggacg cccaggtcgc gcagctccgc cttgtcccgc tcgaacatcc ggaagaaagc
     3301 ctcgtcggac ggggcgtcgg cgtagccggg cacgatccgc cggatccgct cggcaggcag
     3361 atactgccgg ctggacagca ggcagatcac cagattgacc agacgctcgg cgcggccagt
     3421 tgccatgggg agcagcttag gggccgacta cggctgggcc gtgagtggcg ttagttgtca
     3481 gaacactgtt tcgcactcac gagagctcat agcgaagcta tgagccgctc cacccgctcg
     3541 tcgaccgccc ggaacgggtc tttgcacagc acggtgcgct gcgcctgatc gttgagcttg
     3601 aggtgcaccc agtcgacggt gaagtcgcgg ccggcggctt gggcggcagc aatgaagtca
     3661 ccccggagtt tggcgcgagt ggtggcgggc ggggtgtcct tggccgcctc gatctcaccg
     3721 tcgtcggtca cccggtcgac cagtgcctta cgctgcagca gatcgaacag cccgcggccg
     3781 cggcggatgt cgtggtaggc gaggtccagt tgcgcgatcc gcggattgga cagatccatt
     3841 cgatgcttgg cccggtagcg ctccaccagc cgatgcttga tcgcccaatc gatctcgcga
     3901 tcgatcaaac cgaggtcctg ccgttccacg gctcccagcg tgcggtccca cagctccatc
     3961 acccggtcgg tcagtggatc ggacccgcgg cgggctatgt gatccgcggc tcgcgcgtag
     4021 tactcgcgct ggatgtccaa tgccgaggcc tcgcgcccac cagccagccg taccccgcgc
     4081 cggccggtga ggtcgtggct gatctcgcgg atcgcccgga tcgggttgtc cagcgtgaag
     4141 tcgcggaacg ccacaccttc ttccaccatc tccaggacca ggttggcagt gcctaccttg
     4201 agcagggtgg tcacctcaga catgttcgaa tcgccgacga tcacatgcag ccggcgatac
     4261 cgctccgcgt cggcgtgcgg ctcatctcgg gtgttgatga tcgggcggga gcgggtggtc
     4321 gccgaggaca ctccctccca gatgtgctca gcccgctgcg agaggcagta caccgcgccg
     4381 cggggtgtct gcaacacctt gcccgcgccg cagaccagct ggcgggtgac caggaagggc
     4441 aacagcacat cggcgatccg cgagaactcg ccggcacgag ccaccaggta gttctcgtgg
     4501 cagccgtagg agttgcccgc ggagtcggtg ttgttcttga acaggaagat gtcaccgccg
     4561 ataccttcgt cggccagccg ccgctccgca tcgaccagta ggtcctcgag gatccgttcg
     4621 cctgccttgt cgtgggtgac cagctgcacc aggtcgtcgc actccgcggt ggcgtactcc
     4681 gggtgcgaac ctacgtcaag gtagagccgg gatccgttac gcagaaagac gttggaggag
     4741 cgaccccacg agaccactcg gcggaacaga taccgggcga cctcgtctgg agagagccgg
     4801 cgctggccat ggaaggtgca ggtaaccccg aactcggtct caatgccgaa gatccgccgc
     4861 tgcatgtcat ccagcctagg ctgctacggc catcctgcag gcctccgtac gggctgactt
     4921 gagttgtcac ggtgcggggc tggtcgcgca gagtagcgac gtccctcgga gaccggtggt
     4981 atttcgcgac caggctgagc tgtcaagtct gccgctcagc tgctggcgct gggctccccg
     5041 ctggctggcg ggccattcgt gccatcgctg tcttcaccag catctggagg ggaagaatca
     5101 ggaggttcct cggtgggggc agcgccggcg ctggtgagca gcgcggtgag ggcggccccg
     5161 gtgatgcggc ggaacgcacg acgcggacgg gatcgatcca agaccgcgac ctcgagttga
     5221 ccgacgccca gaatccgctt gccggctccg ttgacgttgg tcgagaccga gctcagggct
     5281 gccacggcgg cggcgacggc ctccgcggta tccatgtcct gccggaagga ttccttgaga
     5341 gccgtggaga tgacatcggc ctggcctccc atcacgacga agtcaggctc gtcaacgatc
     5401 gagccgtcgt aggtgaggtg gtagagctga tcggagtccg tgtcggcgcc aacctcggca
     5461 acgcacagct ccacctcgaa gggcttctgc tgctccgaga aaatcgtccc gagagtctgg
     5521 gcataagcgt tggccaagcc acgcccggtc acatcacggc gatcgtagga gtagccgcga
     5581 aagtcagcgt gccggatacc ggcttgacgg aggttctcgt attcgttgta ccggccgacg
     5641 gcggcaaagc cgatccggtc gtaaatctca gagaccttgt gcagcgcggt ggacaggttc
     5701 tcggccacga acaggacgcc gcgtgaataa ctgagcacag caacaccgcg acctcgggcg
     5761 atgcccttgc gggcgagctc cgagcggtcc cgcatcacct gctcgaccga ggcgtagaac
     5821 ggcatcgtca cagcggaagc tcctggaaat gggttggcgg aaaggacgag gttagtgtca
     5881 gccgccgggc ttacgcctgc gggcgtccac cacgagctca gcgacctgtc ccgcctgctc
     5941 atcggacatc cggaccgccc catctgctgc ggtaaccgtg accaccgccg ggtagatctg
     6001 tcggacagga tctggaccac cggtcgcggt gtcgtcatcg gcggcgtcgt acagggcctc
     6061 catcgcaacc cgaacggcgg cgtccacctc catcatcgga tcgtgcaact tcttcagcga
     6121 cgaacgagcg aacaatgaac ccgagcccac cgagtgatag cccagcgtct cctcataccg
     6181 accaccaacg acatcgtagg agacgatccg acccgcccga tccggatcgg cggcatcgac
     6241 gtcgtaaccg acgaaaagtg gcaccgccgc caacccctgc atggcaccgc caaggttgtt
     6301 ccgcaccatt ccggccagcc tgttcgcctt gccgttcaga gtcagcgaaa ccccttcgag
     6361 cttctcgtag tgctgcagct cgaccgtgaa cagtcgcacc atctccaccg cgacaccagc
     6421 tgtccccgcg atacccaccg cggagtagtc gtcaacaacg aacaccttgt ccatatcgcg
     6481 ctgggctatg aggttgccgg ctaccgcgcg gcggtccccc gcgatgagca caccaccgcg
     6541 gaagatggcc gcgacgatgg tggtgccgtg ccggccgacc ggctcgacgc cagcaggtac
     6601 cccgcttacc cggcgtcccg gcaacaactc aggcgacgca gcagcgagaa aatcagtgaa
     6661 cgacgagctg cccaccatga agtgtgacgc cgggagcgct gcacccggat agcgtccgac
     6721 cgaggactgg tccatcggct gtgatcgtct cctaactccc gttgtcgcag tccctcgtgt
     6781 gccggactct cgtgtaccag tctgtcacaa catggtaacc cgctgtgccg ggcacgatgc
     6841 ccgaatctct ggggttacct atcactggcc gcctttctgg acataggcgc ggacgaagtc
     6901 ctcggcattc tcctcgagca catcgtcgat ctcgtcaagg atcgcgtcca cgtcctcgcc
     6961 cagcttctcc cggcgttcct ggccggccgg cgcaccgcca gccgcctcgt cgtctccgcc
     7021 gccgccttga cgctgcacct tctcttggga catttcgcct cccggaccga gttgtctctg
     7081 agccaaacag tactcagcaa tgccgacaat cgctgccagt ccagttaggt gatcagcctc
     7141 gagtgagcgc ttccaccagc tccgcagcgg tgttggaggc gtccagcagt gccccgacgt
     7201 gggcgcgggt gcctcgcagc ggttcgagag tagggatgcg gaccagggac tcgcggccca
     7261 gatcgaagat caccgagtcc caggatgccg cggccacctc cgtggcatag cgctccaggc
     7321 accggccgcg gaagtaggcg cgagtgtcct ccggtggccg ggtgatggcg gcgaacacct
     7381 cttcctcggt gaccagccgc ttcatcgagc cgcgggccac cagacggttg tacaagccct
     7441 tgtgcagccg cacgtcggcg tactgcagat ccaccagctg tagccgggga gaggcccatc
     7501 ccagaccgtc cctggcccgg taaccctcca ccagccgcaa ctttgccggc cagtccaacc
     7561 gatcggcaca ctccatcgga tccctcgcga gcgcgtcgag cacctctccc cacatgctca
     7621 agacgtgctc ggcgctctcc gaggcgttgt ccgggccacc attgcgcgcg aagaactgcg
     7681 ccactcgctc gtggtaggca cgctgtaaat ccaggcctgt gaggtgacga ccacctgcca
     7741 cctccactgt tgccttcagg gacggatcac ggctgatcgt gtgcactgcc cgcactgcgt
     7801 cgaccagccg ca
//
LOCUS       DASVXZ010000470         2520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1215670, whole genome shotgun sequence.
ACCESSION   DASVXZ010000470 DASVXZ010000000
VERSION     DASVXZ010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1215670"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..191
                     /locus_tag="VF788_09735"
                     /pseudo
     CDS             1..191
                     /locus_tag="VF788_09735"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(381..451)
                     /locus_tag="VF788_09740"
     tRNA            complement(381..451)
                     /locus_tag="VF788_09740"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(417..419),aa:Gly,seq:tcc)
     gene            574..650
                     /locus_tag="VF788_09745"
     tRNA            574..650
                     /locus_tag="VF788_09745"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:608..610,aa:Pro,seq:tgg)
     gene            814..2145
                     /gene="tig"
                     /locus_tag="VF788_09750"
     CDS             814..2145
                     /gene="tig"
                     /locus_tag="VF788_09750"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEX8934458.1"
                     /translation="MKSTVEQLSPTRVKINVEVPFDELKPDFDRAYKKIAQQVSIPGF
                     RPGRAPAKILEQRLGRGVVLEEVVNGVIPAKYAEIVSAGDVHPLGRPEIEVTKIEDGN
                     SLEFTAEVDVRPQIEMPAFTELAVSVEDVEVTDAEVEEQLDGLRSRFGTLTAVERPVQ
                     EKDFVMLDLSATVDGEEIAELATTDLSYQIGSGELIEGIDDVLVGASQGDEPTFTTTL
                     AAGEYAGREAQVTAKIQAVKERELPAADDEFAQLASEFDTIEELRADLRTRLGRVKSM
                     QQGVKARDEVLKALLDATEVPLPAAIVDSEYETRKHDALHAFDHDEQRLGRWLEQQGH
                     SPEEFETDLRKGASETVKAHLLLDAIADAEELSVSDGELSERIVYQAQRRGVSPNEYA
                     QQIHQSGELGTIYADVRRGKALATVVRQASVTDGSGNVVDVDALIDAAKQQ"
     gene            2366..>2520
                     /locus_tag="VF788_09755"
     CDS             2366..>2520
                     /locus_tag="VF788_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEX8934459.1"
                     /translation="MRAATAGLNLTDSVYERLLRERIIVLGSQVEENIANQICAQLLL
                     LSAEDPD"
BASE COUNT          502 a          828 c          816 g          374 t
ORIGIN      
        1 cccgcccggc gcgtagcaac ttccacacca tctggaacaa ggcacgacac caagccggag
       61 tcccgcacct gcacctgcac gacttgcgac acaccggcaa caccctcgcc gcggaaaccg
      121 gagcaacact gcgcgagctc atggaccgca tgggacatcg ctcaacccgc gccgctctga
      181 tctacctcca cgcccgcgac caacgcgacc gcgccatcgc tgacggcctc gacaccatca
      241 tcggaacagc ccacctcgcc accccacaga ccgtgagtga ccgccatgac gggcacgcgg
      301 ggggcacaaa acaacaacaa ccgagcgcca aaggtccaca agcgacggat agcaagccat
      361 ctagcagcaa aaatgcgcgg agcgggcgac cgggatcgaa ccggcatggc cagcttggaa
      421 ggctggggct ctaccattga gctacgcccg cgtgccccgc ggaagcgggg ccgcttaagc
      481 ctacctgctg cccgtttgac cgcgtgacgt gagcggtggt cgacgcaaga tctccgtcgt
      541 cgcgtaggct gcgctcggca ccagtcggtg caacggggtg tggcgcagct tggtagcgca
      601 ctcgctttgg gagcgagggg ccgtgggttc aaatcccgcc accccgacca gaccgatctt
      661 tgccgtcgtg gcagcggtca agccagtcaa gctcagcaag ccagcgcccc cggctaagga
      721 atcgaagtgc tcgcctagac tcggcgtaca cctcctgtcc ggcggctatg ggtcagccgg
      781 caagtcccca tccatactgg cgaggagtac gccgtgaaga gcaccgtcga acagctcagc
      841 ccgacgcggg tgaagatcaa cgtcgaggtg ccgttcgacg aactgaagcc cgacttcgac
      901 cgcgcttaca agaagatcgc ccagcaggtc agcatcccgg gattccggcc tggccgcgcc
      961 ccggccaaga tcttggagca gcgcctgggt cgcggtgtgg tgctggagga agtggtcaac
     1021 ggggtgatac cggcgaagta cgctgaaatc gtctccgctg gcgacgttca cccgcttggc
     1081 cgtccggaga tcgaggtgac gaagatcgag gacggaaaca gcctcgagtt cactgccgaa
     1141 gttgacgtcc ggccgcagat cgagatgccg gcgttcactg agctcgcggt ctcggtcgag
     1201 gacgtcgagg tgaccgatgc agaggtggag gagcagctcg acgggctgcg ttcccgcttc
     1261 ggcaccctca ccgcggtcga gcgccctgtg caggagaagg attttgtgat gctcgacctg
     1321 agcgccaccg tcgacggcga ggagatcgcc gagctggcaa ctacggacct ctcctaccag
     1381 atcgggtctg gcgaacttat cgagggcatc gacgatgtac tggtcggtgc ctcacagggt
     1441 gacgagccga ccttcacgac cacgctggcc gccggggaat acgctgggcg agaggctcag
     1501 gtgacggcaa agatccaagc ggtcaaggag cgggagttgc ccgcggcaga cgatgagttc
     1561 gcccagctcg ccagcgaatt cgacaccatc gaggagctcc gcgccgatct gcgcacgcgg
     1621 ctcgggcgcg tcaaatcgat gcagcagggt gtgaaggcca gagacgaggt gcttaaggca
     1681 ctgttggatg ccaccgaggt cccgttgccg gcggcgatcg tcgactctga gtacgagacg
     1741 cgcaagcatg acgccctgca tgccttcgac cacgacgagc agcgcctcgg tcgctggcta
     1801 gagcagcagg gtcacagtcc cgaggaattc gagaccgatc tgcgcaaggg cgcgagcgag
     1861 acggtcaaag ctcatctgct gctcgatgcg atcgccgatg ccgaggagct ctcagtcagc
     1921 gacggcgagc tcagcgagcg catcgtctac caggcccagc gtcgcggtgt cagcccgaac
     1981 gagtacgccc agcagattca tcaatccggc gagctgggca ccatctacgc cgatgtccgc
     2041 cgcggcaaag cgctggccac tgtcgtgcgc caagcgagcg tcactgacgg ctccggaaac
     2101 gttgtcgacg tcgacgcgct gatcgacgcg gcgaagcagc agtaggcgta ctggcgtaac
     2161 gctctgagcg aacctcgggc gcgccaggaa ctagacgcct gtcctcttgg ttagggtcgg
     2221 cagtgtcccc agcgccggag ttcggatcta tctggcgagc cggacctttc acgcccaccg
     2281 caggggtgga cccgatgaca gaaggcaggc atacgtgacc accgaccaca tcgcctcggc
     2341 cgggccgctg cgggacgccc ccgcgatgcg ggccgccacg gctggcctca acctgaccga
     2401 ctcggtgtac gagcggctgt tgcgcgagcg catcatcgtg ctcggatctc aggtggagga
     2461 gaacatcgcc aaccagatct gtgctcagct gctgctgctc tcggcggagg accccgacca
//
LOCUS       DASVXZ010000471         1783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_498378, whole genome shotgun sequence.
ACCESSION   DASVXZ010000471 DASVXZ010000000
VERSION     DASVXZ010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498378"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..1041
                     /locus_tag="VF788_09760"
     CDS             223..1041
                     /locus_tag="VF788_09760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934460.1"
                     /translation="MLGARLRRLREAAEISRGEAGFAIRSSESKISRLELGRVGFKVR
                     DVTDLLTMYGVTDPEKRQVFLDMVARSNEPGWWHRYTDLVADWFQDYLGLEESASRIQ
                     TWEQQFVPGLLQTEDYAKALAMHGWSPLATPSVQRQVTVRMRRQTLLTRPNPPKVWAV
                     MDESVLHRPIGGGRVMLAQIEHLLELGKRPNVTLQVVPYQFSGYAAEGSFTMLRFAEP
                     ELPDVVYLEHLSGALYLDKRSDTELYSRVFDRLTVDAHTPDHTRQLLAKARTEI"
     gene            1183..1422
                     /locus_tag="VF788_09765"
     CDS             1183..1422
                     /locus_tag="VF788_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8934461.1"
                     /translation="MSQPIRNGMPAAGLAGVTWRKSRHSGQLGNCVETAALSAGEIAM
                     RNSRDPGGPALIFSRDEMVAFLAGAKDGEFDDYAS"
     gene            1429..>1783
                     /locus_tag="VF788_09770"
     CDS             1429..>1783
                     /locus_tag="VF788_09770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934462.1"
                     /translation="MSETNRRGEPGAGAAVVVERSLMLVRYRAGVIGQTAGTVHLVPV
                     LGEREVSAVVALCGDLLCSEEIEMVAHNMGVPCAPCLASRAIAMDSSAGCDGGDAEIA
                     VGPLYSGWGWPVTQQR"
BASE COUNT          313 a          538 c          592 g          340 t
ORIGIN      
        1 cggacatgga tccattgagc ctaggagtgc aggagcgcgg ggcaaagcca gggggtgcac
       61 ctatgaccat gctccaccgc acggtaggtt cagtgatggg gttgactaca ccggaggtgc
      121 ggcgtggcca aagatgatcc tccggtgacc cgagatactc cggtagatcc ctatggccca
      181 accgtaaccc ctgagcatgg cagccccacc gcacgccgaa tcatgttggg cgcccggcta
      241 cgccggctgc gggaagccgc tgaaatctcg cgtggcgagg ctgggttcgc catccgcagc
      301 tccgagtcga agatcagccg ccttgagctt ggccgagtgg gcttcaaggt acgcgacgtg
      361 actgacctgc tcacgatgta cggcgtgaca gatcccgaga agcgccaggt gtttctcgac
      421 atggtagcgc gatcgaacga gcccggttgg tggcatcgct acaccgatct ggtcgccgat
      481 tggttccagg attacctcgg cctggaggag tcggcctccc ggattcagac gtgggaacag
      541 cagttcgtcc ctggtctgtt gcagaccgag gactacgcga aggcgctcgc gatgcacggt
      601 tggtccccct tggccacccc gagtgtgcaa cgtcaagtca cggtacggat gcggcgtcag
      661 acgctgctca cccggccaaa tccacccaag gtgtgggccg tcatggacga atccgtcctg
      721 caccggccga tcggcggtgg acgagtgatg ctggcccaga tcgagcatct cctcgaactc
      781 ggcaagcgac ccaacgtcac ccttcaggta gtgccgtacc agttcagtgg gtatgccgcc
      841 gagggctcgt tcacgatgct ccgtttcgct gagccggaac tgccggacgt ggtgtacctc
      901 gagcacctga gtggcgccct ctacctggac aagcgatccg ataccgagct atatagcagg
      961 gtcttcgacc ggcttaccgt ggatgcacac actcccgatc acacccggca attgctcgct
     1021 aaggcgcgca cggagatctg accagcggtt tccttgaggc cagctggccc cgtccttgct
     1081 tgtttccggc gcgcacctgc acgtgcattg acacctgcta aagcacgcgc taatttcgcc
     1141 gggtgcacgt gcaggtgcac ccaaccgagg ggtgggtggt ccatgtcaca gccaattcgc
     1201 aacggtatgc cggccgccgg acttgccgga gtgacctggc gcaagagccg gcacagcggt
     1261 cagctcggca attgcgttga aactgcggcg ctttccgctg gtgagattgc catgcgcaac
     1321 tcacgcgatc ccggtggccc agcgttgatc ttcagtcgtg atgagatggt ggccttcctg
     1381 gctggcgcca aggacggcga gttcgacgac tatgccagct gagctggtgt gagcgagacg
     1441 aaccggcggg gggagcctgg tgccggtgcc gcggttgtag tggagcggtc tttgatgctg
     1501 gtccgctacc gggctggcgt gatcggtcag accgctggca ccgtgcacct ggttcctgtc
     1561 ctgggcgaac gtgaggtcag tgcggtcgtt gccttgtgcg gcgacctgtt gtgctccgaa
     1621 gagatcgaga tggtcgccca caacatgggc gtgccttgtg cgccatgcct ggcgagccgg
     1681 gctattgcca tggattcgtc agccgggtgt gacggcggag acgctgagat cgcggttggg
     1741 ccgctctaca gcgggtgggg ctggccagta actcagcaac gtg
//
LOCUS       DASVXZ010000472         2669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_230342, whole genome shotgun sequence.
ACCESSION   DASVXZ010000472 DASVXZ010000000
VERSION     DASVXZ010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230342"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1691)
                     /locus_tag="VF788_09775"
     CDS             complement(<1..1691)
                     /locus_tag="VF788_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005437746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8934463.1"
                     /translation="MDTAWTDSLLRFGKHFQRGEASGDLRTVHQIGGRSADEFYRDRW
                     AYDKVVRSTHGVNCTGSCSWKIYVKDGIITWEAQQTDYPSIGPDKPEYEPRGCPRGAS
                     FSWYTYSPARVRYPYVRGTLLELYREAKQRLKDPVLAWADVADDPEKARRYKAARGMG
                     GFVRAEWWEAAEIAAAAHVHTIKRYGPDRVAGFSPIPAMSMVSHAAGARFISLIGGAM
                     LSFYDWYADLPEASPQVFGDQTDVPESADWFDASYLIMWGSNVPVTRTPDAHYMTEAR
                     YRGQKVVVVSPDYGDHTKFADEWLPARPGTDAALAMSMGHVILKEFFVEAQTPRFTDY
                     IKRFTDLPFLVALDERGDAYLPGKFLTAADLGDTGEGAESKTVLLDAITGATAVPNGS
                     LGHRFTRSGEGRWNLDLQDVEPLLTLHGGNEVAEVHLPRYDTAEPGVLHRGVPTRRIA
                     GKLVTTVFDLLLAQYGVHRPGLPGSWPTGYDDAEQPYTPAWQEPITGVPAAAAERIGR
                     EFADNAERSGGRSMILMGAGTNHWFHSDQTYRSFLALVMLTGCQGVNGGGWAHYVG"
     gene            complement(2256..2543)
                     /locus_tag="VF788_09780"
     CDS             complement(2256..2543)
                     /locus_tag="VF788_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEX8934464.1"
                     /translation="MDVESLDRIRDVVAAIPAGSVLAYGEVAARAGLPGRARLVGRIL
                     AEDGHDLPWHRVLRADGTPAPHLAVEQLARLRAEGVLAEGGRIPILRYRAR"
BASE COUNT          475 a          848 c          840 g          506 t
ORIGIN      
        1 ccgacgtagt gcgcccagcc gccgccattg actccttggc acccggtgag catcaccaga
       61 gccaggaacg atcggtaggt ctggtcagag tggaaccagt ggttggtgcc cgcgcccatc
      121 aggatcatgg accggccgcc ggagcgttcg gcgttgtcgg cgaactcgcg gccgatccgt
      181 tccgcggcgg cagcaggtac tcccgtgatc ggctcctgcc aggcgggtgt gtagggctgt
      241 tcggcgtcgt cgtagccggt gggccagctg cccggcaggc ctgggcggtg caccccgtac
      301 tgggctagca gcagatcgaa caccgtggtg acaagcttgc cggcgatcct gcgggtcggc
      361 accccacggt gcagtacacc gggctcagcg gtgtcataac ggggcagatg gacttcggcc
      421 acctcgttac cgccatgcag ggtcagcagg ggctccacgt cctgcagatc gaggttccag
      481 cggccttccc cggagcgggt gaaccggtgg cccagggatc cattgggaac cgccgtcgcg
      541 ccggtgatcg cgtctagtaa taccgtcttg gactctgcgc cttcgccggt atcgcccaga
      601 tcggccgcag tgaggaactt tccgggaagg taggcgtcac ctcgttcatc cagggcgacg
      661 aggaatggta gatcggtgaa gcgcttaatg taatcggtga atcgcggggt ctgcgcctcg
      721 acgaagaact ccttgagaat cacatgcccc atggacatcg ccagggccgc gtcggtaccc
      781 ggccgcgcgg gcaaccattc atcggcgaac ttggtgtggt cgccgtagtc cggggacacg
      841 accaccactt tctggccccg atatcgcgcc tcggtcatgt aatgggcgtc cggggtacgg
      901 gtgaccggaa cgttcgagcc ccacatgatc agataactgg cgtcgaacca gtccgcggac
      961 tcgggcacat cagtctggtc gccgaagacc tgcggggaag cctcgggaag gtcggcgtac
     1021 cagtcgtaga acgacaacat ggctccgccg atgagcgaga tgaatcgggc tccagcggcg
     1081 tggctgacca tggacattgc tggaatcggc gagaatccgg cgacgcgatc gggaccgtag
     1141 cgtttgatgg tgtgcacatg tgcggccgcg gcgatctcgg cagcctccca ccattcggca
     1201 cgcacgaagc cccccattcc gcgcgccgcc ttatatcggc gagccttctc cgggtcgtcg
     1261 gccacgtcgg cccacgccag cacgggatcc ttgagtcgct gctttgcttc ccggtacagc
     1321 tccagcaacg tgccacgcac ataggggtaa cgcaccctgg ccggagagta ggtgtaccag
     1381 gagaacgatg cgcctcgcgg gcaaccgcgc ggttcatact cgggcttgtc cggcccgatc
     1441 gacgggtagt cggtctgttg cgcctcccag gtgataattc cgtccttgac ataaattttc
     1501 cacgagcacg agccagtgca gttcactccg tgggtagagc gcacaacttt gtcataggcc
     1561 cagcggtccc ggtagaactc atcggctgac cggccgccga tttggtgtac cgtgcgcaga
     1621 tcacccgagg cttcgccgcg ctggaaatgt ttgccgaacc gtagaagcga atcagtccag
     1681 gcggtatcca taccaacggt cggggcgcta tcgagggtac cggtcacgga ggccacctct
     1741 tcggggaaac gttacgttca gagctatcat gctcacccta gacggtgatt tcacgccctt
     1801 caagaagcgc tgccatactc acattgccac cgagatggcg gtgcgaagta cgtaacatgt
     1861 cgttcatgtt ttggagccct aggcctcagc gaatcatcat gttttcgagg gcgacgtgcc
     1921 ctactatggc tcacaccgcc tgaagtttcc ttttcgttac tttcgttaaa ttccagttac
     1981 gtcctagctg tgacatttcc ctcttcgcaa gggtggtact cggccggcgg agcgaggttg
     2041 atggacggcc agtgtgccat ggcttgccag ggcgcaccat gatcgatcag tgctcgccgg
     2101 tcagttatgg cgggtgatag cgtacccgga tcccagtaaa tcttcgatat ggtgataacg
     2161 caggatccac gctcgctgcc cagccaaaac tactattcgg actatgtcat tctgggaatg
     2221 ataagaacgc atttctgttc acgcccgtcc gtgcgtcatc gcgcccggta gcgcagtatc
     2281 gggatcctcc caccttcagc caggacacct tctgcccgca gccgggccag ttgctcgacg
     2341 gcaagatgtg gcgcaggggt gccgtcggcg cgcagcaccc ggtgccaggg cagatcgtgg
     2401 ccgtcttcgg cgaggatccg gcccaccaat cgagcccggc ccggtagtcc ggcgcgggcc
     2461 gcgacttccc cataggccaa caccgagcct gcgggaatag cggcgaccac gtcgcgtatc
     2521 cggtccagac tctcgacgtc catcgcgacc atcctcccgc gccaccggct gtccgagcgg
     2581 cgtggttgca tgcgcagcgt gcccatcctg gttcgctctg tcaccgagac ggcccgcccc
     2641 accgtgtggg ggccggacgc ccgccgggt
//
LOCUS       DASVXZ010000473         2108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1280189, whole genome shotgun sequence.
ACCESSION   DASVXZ010000473 DASVXZ010000000
VERSION     DASVXZ010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1280189"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1418
                     /gene="glgX"
                     /locus_tag="VF788_09785"
     CDS             <1..1418
                     /gene="glgX"
                     /locus_tag="VF788_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004133 - glycogen debranching enzyme
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HEX8934465.1"
                     /translation="AGTVGTRAHEVVTQFKSTVRELHAANIEVILDVVYNHTGEGNHL
                     GPTLSMRGVDNPAYYRLVENDLRYYMDYTGTGNSLNVRHPHTLQLIMDSLRYWVLEMH
                     VDGFRFDLASTLAREFYDVDRLSSFFDLVQQDPVISQVKLIAEPWDVGEGGYQVGRFP
                     PLWTEWNGKYRDTVRDFWRGEPATLAEFASRFTGSSDLYEADGRRPIASINFVTAHDG
                     FTLNDLVSYNHKHNEENGEENRDGESHNRSWNCGTEGPTEDGKIVALRERQKRNMLTT
                     LLLSQGVPMIAHGDELGRTQHGNNNVYCQDSKTSWVDWDDARQHSILTEFTAALTRLR
                     AAHPVFRRRRFFQGRPIRGSNIEDIAWLRPDGQQMSDDDWNAGSAKTIGIFLNGRGIP
                     ERDDLGERIIDDSFLLLINAHHRPITFTLPDATYGGSWEIVVDTSDPLLANARRRQRD
                     AVAGGRLRVQARAMIVLRCQY"
     gene            1593..>2108
                     /locus_tag="VF788_09790"
     CDS             1593..>2108
                     /locus_tag="VF788_09790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934466.1"
                     /translation="MCARSFAEYLFDVGELQLTALLQARPDVLVQPVPRGFSQLAQRL
                     SGAESLGAALRSMNRDAVIVGQAIVALGASATVPGLIRLLGAPEQAVRDGVAELCGRG
                     LAWDSSGTLCLPERLEAHWLVEIGGGRPVVKIVGSVLAENLRAAVSAFGAATDGLRKP
                     ELAARLSEFMAD"
BASE COUNT          384 a          651 c          692 g          381 t
ORIGIN      
        1 tggcaggcac cgtcggcacc cgagcgcatg aggtcgtcac gcagttcaag tcgacggtcc
       61 gggagctaca cgcagcaaac atcgaagtga tcctcgacgt ggtttacaac cacaccggcg
      121 agggcaatca ccttggaccg acgctgtcga tgcgcggcgt cgacaatccg gcctattatc
      181 gcctcgtcga gaacgatctt cgttactaca tggactacac cggcaccggc aactcgctga
      241 acgtgcgcca cccgcacacc cttcagctca tcatggattc gctgcggtac tgggtactcg
      301 agatgcatgt cgacggcttc cgcttcgacc tcgcctccac gttggcccgt gagttctatg
      361 acgtggaccg gctgtcctca ttctttgacc tggtccagca ggatccggtg atcagccaag
      421 tgaagctgat cgctgaaccg tgggacgtcg gcgagggagg ttaccaggtc ggccgcttcc
      481 cgccgttatg gaccgaatgg aacgggaaat accgcgatac cgtccgcgat ttctggcgcg
      541 gcgagccggc cacactggcc gagttcgcct cccgattcac cggttcgtcg gacctctacg
      601 aggcggacgg tcgccgaccg atcgcctcga tcaactttgt gaccgcgcac gacggcttca
      661 cgttgaacga cctggtgtcg tacaaccaca agcacaatga ggaaaacggc gaggagaacc
      721 gcgacggcga gagccacaac cgctcgtgga actgcggtac cgagggcccc accgaggatg
      781 gcaagatcgt cgcactgcgc gaacgtcaga aacgcaacat gctgactacc ctgctgcttt
      841 cccagggcgt tccgatgatc gcgcacggcg acgaactcgg tcgtactcag catggcaaca
      901 acaacgtcta ctgccaggac agcaagacca gttgggtgga ctgggacgat gcccgccagc
      961 actcgattct caccgaattc actgccgcgc tcacccgact gcgcgctgcc cacccggtat
     1021 tccgccgccg ccggttcttc cagggccgcc cgatccgcgg ctccaacatc gaggacatcg
     1081 cgtggctgcg tcctgacggg cagcagatga gtgacgacga ctggaacgca ggatccgcca
     1141 agactatcgg gatatttctc aacggccgcg gcattcccga gcgcgacgat ctcggcgaac
     1201 ggatcatcga cgattccttc ctgcttctga tcaatgccca ccaccggccg atcaccttca
     1261 cactgcccga tgcgacctat ggtggcagct gggagatcgt ggtggatacg tccgatccac
     1321 tactggccaa cgcccggcgc aggcaacgcg acgccgttgc gggcggcagg ttacgggtgc
     1381 aggcgagggc gatgatcgtg ctgcgctgcc agtactgagg tgcctacagc cattgcgcga
     1441 cggtggttgc cgcgactgcc gatagatcgg tgaggataga actggacgga atcggtgtgc
     1501 gccgtttgat cgacttacgg cacgggtgat cgcctacgtg gtgcgtgcgc cccctccatg
     1561 cccctgagcg gtccagcggc agaatgacgg acatgtgcgc aaggtcattt gcggagtacc
     1621 tgtttgatgt gggggagttg cagctgaccg ccttgctaca agcgcgcccg gatgtcctgg
     1681 tgcagccggt tccgcgtggg ttcagccagc ttgcgcagcg gttgagtggt gcagagtcgt
     1741 tgggcgccgc attgcgctcg atgaaccggg atgcggtgat cgtcgggcag gccatcgtcg
     1801 cgctgggtgc atcggcgaca gttccgggtt tgatccggtt gctgggcgcc ccggagcagg
     1861 cggtgcggga tggagtagcc gagctgtgcg ggcggggact ggcctgggac agttccggga
     1921 ctctgtgcct gccggaacgg ctggaggcgc actggctggt ggagatcggc gggggccggc
     1981 cggtggtgaa gatcgtcgga tcagtgctgg ccgagaacct ccgggcggcg gtcagtgcct
     2041 tcggtgccgc gaccgacggc ctacgcaagc cggaactggc ggcgcggctg tcagagttca
     2101 tggcggat
//
LOCUS       DASVXZ010000474         1605 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_230450, whole genome shotgun sequence.
ACCESSION   DASVXZ010000474 DASVXZ010000000
VERSION     DASVXZ010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230450"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..541
                     /locus_tag="VF788_09795"
     CDS             266..541
                     /locus_tag="VF788_09795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934467.1"
                     /translation="MDHAGSGGARASAPVRVAFRAFEHVGTQVAQVFAAQWLAYVLPY
                     RRFADTLASANARLRAGADRYSFTVGDFHLLLLAGLPGALSGRDGHC"
     gene            complement(633..812)
                     /locus_tag="VF788_09800"
                     /pseudo
     CDS             complement(633..812)
                     /locus_tag="VF788_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            807..1241
                     /locus_tag="VF788_09805"
     CDS             807..1241
                     /locus_tag="VF788_09805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934468.1"
                     /translation="MHHRLRLLVFPMRTRGIPPLAKPEISRFPRKELPHMPGSWTTPG
                     RAAARAIASVRVAFRAFEHVGTQIAQVFAAQWLAYVLPYRRFADTLASANARLRAGAD
                     RYSFTVVDFHLLLLAGLPGAPKVLMGWTAPAPGIDVPQRGRL"
     gene            1269..>1605
                     /locus_tag="VF788_09810"
     CDS             1269..>1605
                     /locus_tag="VF788_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934469.1"
                     /translation="MQVSTIGLGLAKHWFQVHGVDANGQVVVRRRLWRSGVIAYFRSL
                     EPCLVGMEACATAHYWARELTALGHTVKLMPPAYVKAYVKRNKNDAADAEAICEAVTR
                     PSMRFVPVKD"
BASE COUNT          240 a          564 c          473 g          328 t
ORIGIN      
        1 gcataaatcg gtccggacag cgatggctgc gtcggattgg gcggcgagaa ccggcatggt
       61 tggctcctga ggtggggacg cttcatcagc ctcactctcg cggaaagcgc tggtcgctat
      121 ccactcgccc ataagatctt ctcacgcccg tgcatcatcg gcttcgcctc ctcgccttcc
      181 cgatgcggac ccgcggtatg cctccgctgg ccaaacccga gatctcccgg ttcccgcgca
      241 acgagcttcc acacatgcca gggtcttgga ccacgccggg tcgggcgggg ctcgcgctag
      301 cgcacccgtc cgtgttgcct tccgggcttt cgaacacgtc ggcacccagg ttgctcaagt
      361 tttcgcggct caatggctgg cctatgtgct cccctaccga cgcttcgccg acaccctcgc
      421 gagtgccaac gcacggctca gggccggtgc ggatcgctac tccttcaccg tgggggactt
      481 tcacctccta ctccttgccg gtcttcccgg cgcactttcc ggtagggacg gccattgctg
      541 accgcccccc ggacagatcc ggacgtgccc aattaaggca tccggctcct accgaaggta
      601 tttaacgaca cgcaccagat cacggcgacg tgtcgtacgc ggtccagcgc ctgtgacacg
      661 ctttcccggc tctgtgtccg gcacgtgctt tgctggcccg cgttcccctc ggtccccgcc
      721 cttcgctcca ccggctccgc cgccggtcgc ccggccttgt tcgctggctt cctcgctact
      781 atggcggagt cagacctctc gggttcgtgc atcatcggct tcgactcctc gtcttcccga
      841 tgcggacccg cggtattccg ccgctggcca aacccgagat ctcccggttc ccgcgcaaag
      901 agcttccaca catgccaggg tcttggacca cgccgggtcg ggcggcggct cgcgctatcg
      961 catccgtccg tgttgccttc cgtgctttcg aacacgtcgg cacccagatt gctcaagttt
     1021 tcgcggctca atggctggcc tatgtgctcc cctaccgacg cttcgctgac accctcgcga
     1081 gtgccaacgc acggctcagg gccggtgcgg atcgctactc cttcaccgtg gtggactttc
     1141 acctcctact ccttgccggt cttcccggcg caccgaaagt cttgatgggg tggacggccc
     1201 ccgctcccgg catcgatgtg ccgcaacgtg gtcgtctgtg accgccacaa tgagaggagc
     1261 cgtccaccat gcaggttagc accatcggtt tgggtctcgc caaacactgg ttccaggtcc
     1321 acggcgtcga cgcaaatggc caagtcgtcg ttcgccggcg gctctggcgc agcggcgtga
     1381 tcgcctactt ccggtcactc gagccgtgtc tggttggcat ggaagcttgc gcgacagcgc
     1441 attattgggc gcgtgagctg acggcgctgg ggcatacggt gaagctgatg ccgccggcct
     1501 acgtgaaagc ctacgtcaag cgcaacaaga acgatgctgc cgatgcggaa gcgatctgtg
     1561 aggccgtaac gcgcccgtcg atgcggttcg tgccggtaaa ggacg
//
LOCUS       DASVXZ010000475         6217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_230617, whole genome shotgun sequence.
ACCESSION   DASVXZ010000475 DASVXZ010000000
VERSION     DASVXZ010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6217
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230617"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..696)
                     /locus_tag="VF788_09815"
     CDS             complement(22..696)
                     /locus_tag="VF788_09815"
                     /inference="COORDINATES: protein motif:HMM:NF018745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1345 domain-containing protein"
                     /protein_id="HEX8934470.1"
                     /translation="MNAQPHPAGASLSGYKPSARIEIIVSALAGLIAAVPVAWFTSLE
                     FGLLAGWDTAAAVYLTWVWMMIWPRDAEQTARWAGYTDPTRALADLLVLTAAVASLVA
                     VGFVLANAARSHGVWELLQVGFSLGSVVLAWAVVHTIFTLRYARLYYMGSDGGVDFND
                     GLKPRYSDFAYLAFTIGMTFQVSDTSLCSNETRRAALQHALLSYLFGTGILAMTINLV
                     ASLTSK"
     gene            1361..2179
                     /locus_tag="VF788_09820"
     CDS             1361..2179
                     /locus_tag="VF788_09820"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009077365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8934471.1"
                     /translation="MDFSRSTAEDFPRTAIVTGSDSGIGKATAVALAELGCDVGITWH
                     TDEQGAKATADEVRATGRRAEVQQLDLTALPGAATVIDELSDALGGLDVLVNNAGTGS
                     RALLVDLDYDTWRRILATDLDGAFLCLQRAARRMIAAGRGGRIVNITSVHEHQPRVGA
                     AAYCAAKGGLGLLTKTAALELSEYQITVNAVAPGEVATPMTGQEDIDIHEQHRPGVPL
                     GRPADAREIAAVVAFLCSPAASYVTGASWPVDGGMLQMGPMAGSHLRAEDWRRP"
     gene            2307..2600
                     /locus_tag="VF788_09825"
     CDS             2307..2600
                     /locus_tag="VF788_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016701457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6343 family protein"
                     /protein_id="HEX8934472.1"
                     /translation="MSQQDNPRRRRTREDYRRGLPGYHDPTAGLGGSTPALSALTLRA
                     VLAVFGLLFSAVAAVLTIRSGLTAVGIVFVVLAVVALVDLGWVIYRKRRGEPG"
     gene            complement(2775..3830)
                     /locus_tag="VF788_09830"
     CDS             complement(2775..3830)
                     /locus_tag="VF788_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009078364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:calcium antiporter"
                     /protein_id="HEX8934473.1"
                     /translation="MCGAGRNTGFPVIHFVLLLGCAVVIYLSCDWFVNAVEWLGQRLK
                     VGPLAVGTILAAFGTALPESVVTFVAVVFGTSAAQKDIGVGAAMGGPLALATVAYGAT
                     GWMMLAHRHRARALVLVPAGGPTGDDVGDLTKLARDQRWFLAIFVVKVGLGLVTFAIK
                     PWLGLLFFAAYAVYFWREIRATAGPGTDEDLQPLLLQRHRSNPATWAVVTQTLVTLAI
                     IFVTSQLFVHQLDAIGPLLGLSATVTALLLSPIATELPEIMNAIIWVRQGKTALALAN
                     ISGAMMIQATVPSGLGLLFTPWRFTTPLVISGITTMVAIAYLLVLLRTGRFNAKTLSV
                     AAVAYLAFAVGLVPVLA"
     gene            4214..4336
                     /locus_tag="VF788_09835"
     CDS             4214..4336
                     /locus_tag="VF788_09835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934474.1"
                     /translation="MGYTNANGGFPWVELILQVVVAAIGVSLAAGAYARRSIRS"
     gene            4667..4852
                     /locus_tag="VF788_09840"
     CDS             4667..4852
                     /locus_tag="VF788_09840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934475.1"
                     /translation="MLPLRIEHLPLGDARLTLDVSVDNWHIDGLPPEVVPVLTPPHQG
                     QRRHPERACRQAHFGAL"
     gene            5007..5237
                     /locus_tag="VF788_09845"
     CDS             5007..5237
                     /locus_tag="VF788_09845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934476.1"
                     /translation="MMDSVFARMAGSVLTAATVTLTMAVPASAQAPTPPPKDPGVGAA
                     TTIACGISYPAKDRSGFHTFPGHDRDLTQRPQ"
     gene            complement(5459..5776)
                     /locus_tag="VF788_09850"
     CDS             complement(5459..5776)
                     /locus_tag="VF788_09850"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEX8934477.1"
                     /translation="MDLSRHQAWLTDGAGHVIAGPVAARGGTKSAPTPVGTFHVLSKD
                     KNFYSTEFHAPMPYSVFFYPGDAFHADSTSVASNGCIHLTSSSAQRFYNTLHLGDQVQ
                     IVG"
BASE COUNT         1147 a         1993 c         2057 g         1020 t
ORIGIN      
        1 ttcgccgtga cgccctctga gctacttact ggtgagactg gcgaccaagt tgatcgtcat
       61 ggcaaggatg ccggtgccga acaggtagga caacagggcg tgctgcagag ccgctcgacg
      121 agtttcattc gaacataggg acgtgtccga gacctggaag gtcatgccga tagtgaaggc
      181 gaggtaggcg aagtcgctgt accggggttt gaggccgtcg ttgaagtcca ccccaccgtc
      241 tgaccccatg tagtacaggc gcgcgtaccg cagagtgaaa atggtgtgca ctactgccca
      301 ggccagaacg accgacccca ggctgaaccc gacctggagc agctcccaca caccgtgact
      361 acgcgcggca ttcgccagca cgaaaccgac ggccaccagg ctcgcgacag ccgctgtcag
      421 caccaggaga tcggcgagag cccgtgtcgg atccgtgtat cccgcccatc gtgcggtctg
      481 ctcggcatcc cggggccaga tcatcatcca cacccaggtc aaatacaccg ccgccgcagt
      541 gtcccagccg gccagcaacc cgaactccag cgaggtgaac caggcgaccg ggaccgccgc
      601 gatgagaccg gcgagcgccg agacgatgat ctcgatccgg gccgagggct tgtagccgga
      661 cagggacgca cccgcagggt ggggctgtgc gttcacatcg ccatcatgct cgcctccgac
      721 acttcgggca gggcgaccac ccgccctggg gataccaatg gggtggtgtg gattcgcgct
      781 ggtagaacga ggacggcgct ccgccgtcga ggccattctt cctggcatgg agacctggct
      841 agcggatgct cagcgccggg ccgcgccgtg gctgaagtgg agcgcaaccg tgcacaacgc
      901 ggtgcagacc gagactttcc cattccgaag gcgcaagcag gattcgtcct gttcctgggc
      961 cggcttgctc cggccaaggg gttaccggag gccataaccg ctgccgcttc tgccggcctg
     1021 acgggtctga tctgcgatca cccctcggat ctgcccgccg cgctgcatcg ggtgcacgag
     1081 ctcgatgcgc cccccggttg ccggagccgc ctcttccccg ctgctgaccg tggcgtcaac
     1141 gccgcagtgt ctccgacagg gagcagccga agggaggtcc gcccgagcag ctcgaggcgg
     1201 tgcggtaatt ggacgcgcgt gcctgctgcg agtgggcgat gacctagagc tcgtgctgga
     1261 cctgttcctc gctggaaacg gagggggacc ggagcctgat taaggccgtc ctcgtactcc
     1321 gcagagttca ggactggtcc gcatggggaa gacctccagc atggactttt cgcgtagtac
     1381 agccgaggac tttccccgta ccgcgatcgt gaccggttcc gactccggca tcggaaaagc
     1441 gacggcggta gccttggccg agctcggatg tgatgtgggg atcacctggc acaccgacga
     1501 gcagggcgcc aaagcgactg ccgatgaggt tcgggcgacc ggtcggcgcg ccgaggtgca
     1561 gcagctcgat ctcacggcac tccccggcgc agcgactgtc atcgacgaac tctccgacgc
     1621 tctcggcggc ctggacgtac tggtgaacaa cgctggaacg ggctcgcggg cgctgctggt
     1681 cgatctcgat tacgacacct ggcgccggat tctcgcgacg gatttggacg gcgctttcct
     1741 gtgcctccaa cgggcggccc ggcgaatgat cgctgccggg cgcggcggac ggatcgtgaa
     1801 catcaccagc gttcacgagc accagccgag ggtgggcgct gccgcctact gcgcggccaa
     1861 aggcgggctg gggctactca ccaagaccgc tgctctggag ctgtccgagt accagatcac
     1921 agtcaacgcc gtcgccccgg gcgaggtcgc tacgcccatg accgggcagg aggacatcga
     1981 catccacgaa cagcaccgtc ccggcgtacc gctcggtcgg ccggcggacg cccgtgaaat
     2041 cgccgcggtg gtcgctttcc tgtgctcccc tgcagcgtcg tacgtcaccg gagcatcctg
     2101 gccggtagac ggcgggatgc tgcagatggg accgatggcc gggtctcatc tacgagcaga
     2161 ggactggcgc cgaccatagc tcgcgtggtc tttgacataa caagatggtc gcagtgcctg
     2221 acggccattt catcagcgtt cctgggctgg ccgttcgccg gtacgtgggc tgagactggc
     2281 gatcgacgtc gttcggagga aatgttatgt cacaacaaga caacccgcgc cggcggcgca
     2341 cccgggagga ctaccggcgc ggactgcccg gataccatga tccgaccgct gggttaggcg
     2401 ggtcgacccc agccctcagc gcgctgacat tacgagctgt gctggccgtt ttcgggctgt
     2461 tgttcagcgc cgtcgccgcg gtattgacga tcagatcagg tttgacagca gtcgggatag
     2521 tgttcgtggt gctcgcggtg gtggcactgg tggacctggg ctgggtgatc taccgcaagc
     2581 ggcgcggcga gcccggctga acagcacagg cgccggattg cgctcgctaa ggcgaggcga
     2641 aaggcgccgc acgcgagtac cggtcaaggt cactgcgagc ttgtccccag tgcggttgtt
     2701 ccgtgctggg tggcgtggcg cccggatcaa ccatggctcc gtggctggcg ccatgccgac
     2761 ctctcatgct ggtctcaggc gaggactggg acgaggccga cggcgaaggc gagataggcc
     2821 accgccgcga ctgacagggt cttggcgttg aatctaccgg tgcgcagcag gacgagcagg
     2881 taggcaatgg cgaccattgt ggtgatcccg gagatcacca gtggggtggt gaagcgccac
     2941 ggggtgaaca gcagacccag tccgctcggc acggtcgcct ggatcatcat cgccccggag
     3001 atgttggcca gcgccaaggc cgtcttgccc tggcggaccc agatgatcgc gttcatgatc
     3061 tcgggcagtt cggtggcgat cggcgacagc agtagcgcgg tcaccgtcgc tgacaacccg
     3121 agcaatgggc caatggcgtc gagttgatga acgaacagct gtgaggtgac gaagatgatc
     3181 gccagcgtga caagggtctg ggtcaccacg gcccaggtgg cggggttact ccggtgacgt
     3241 tgcagcagca gcggctggag gtcctcatcg gtgccgggcc ctgcggtggc gcgtatctcc
     3301 cgccagaagt acaccgcgta cgcggcgaag aacagcagcc cgagccaggg cttgatcgcg
     3361 aacgtcacca agccgagacc gactttgacg acgaaaatcg ccagaaacca gcgctggtcg
     3421 cgggccaact tggtgaggtc accaacatcg tcgccggtcg gcccacctgc cggcaccagc
     3481 accagagcgc gtgcgcggtg acgatgtgcc agcatcatcc atccggtcgc accgtaggcg
     3541 acggtggcca gcgcgagggg accgcccatc gcagcaccca cgccgatgtc cttctgcgcg
     3601 gcgctggtgc cgaacaccac cgccacgaag gtgacgacgc tttccggcaa ggcggtgccg
     3661 aaggccgcca ggatggtgcc gacggccagc ggaccgacct tcagccgttg gcccagccat
     3721 tccacggcgt tgacgaacca gtcacacgac aggtagatca ccacagcgca tccgagaagt
     3781 aacacgaaat ggatcacagg gaagccggta ttccttcccg cgccgcacac ggggccgaac
     3841 tcccgggact ccccgcagac ctcgaccccg cggcaacgcg cacgtcacca agggccgaag
     3901 gtctcgccca ccccagctag cgggcccggc caccgggaac ctgtcaaggc tccagcatgt
     3961 cgacgaccgg cgtaggacta ctccccttca ggtaatccac tatacgggtc atccggctcg
     4021 aggcagtctg cgcataccgc tgtccccata actgcgccaa gcggagcgca gattttgacc
     4081 cggtgggacc aggagaggcc acctcgaccg tgggtaggaa tgacggtgcc agagcaaccc
     4141 tctcatcctg aaggtagcga catgcacatc accggcatca tctcggcgat catcgtcggg
     4201 tacatcggtg gccatgggct ataccaacgc taacggcggc ttcccgtggg tggagctcat
     4261 cctccaggtc gtggtggccg cgatcggggt gtcccttgcc gcaggcgcct acgcccgacg
     4321 cagcatccgg tcttaggcgt gggttagcgc ctcgaccaac gcagggtggt ggcgttcact
     4381 gcaccgaatc cgatgtaatg aaagcaaaca tcagacgttt aacgttaaag tggacgccgc
     4441 ggcggacgat gatagttgtg caattgcgta taaggtattg aacgagccgt acgttcgttc
     4501 atttgaacgc tcgagccttt cccagcggcg atggggaaca gggcatcgca acggcattgc
     4561 ataagctgtc cgggctggcg gtcgcggtcg cggtggaggc ccgggcccgc gtggagctgt
     4621 tgggcccggg cgcaacgcca cagcggccgc tgcgcaccgg ggacccatgc tgccgctgcg
     4681 catcgagcac ctgcccctcg gagacgcacg gttgaccctc gatgtcagcg tggacaactg
     4741 gcacatcgac ggcctaccac ccgaggtggt cccagtgctg acaccaccac accaaggtca
     4801 acgacgtcat cctgagcggg catgccggca agcgcatttc ggtgctcttt gagctctacc
     4861 cagatgggtg gtttcgccct caacaggacc aaaacggcaa gcgaacttaa ctcggatgac
     4921 ttagcgtagc cgccgcacta ccgtcggttt ccgcgagaga tggtgtagtg catgtcttgg
     4981 atcccacacg ctgacagggg ggcttcgtga tggatagtgt cttcgcccgc atggccggtt
     5041 cggtgctcac cgcggccacg gtcactctga ccatggcggt acccgcgagc gcgcaagccc
     5101 cgacgccacc gccgaaggat ccgggagtgg gcgcagccac caccatcgcc tgcgggatca
     5161 gctacccggc caaagatcgc agtggtttcc acacttttcc cggccacgac cgtgacctta
     5221 cgcagcggcc ccagtaactc ctgcatccaa actgggcagg ggacgcccgg ccagctcgcc
     5281 cagtaccact gctacacccc cggagatggg ggcacctgga cgttgctgcg caacgtctcc
     5341 accggagatc agggatgggt tcgcgacgac ctcctagcca gcgatggcag ccaggtgcct
     5401 tgcgaacaaa acccaccacc ggcgggggtc accggactct gacccagata gtgggctgtc
     5461 agcccactat ctgaacctga tccccgagat gcagtgtgtt gtagaagcgc tgcgccgagg
     5521 aggaggtgag gtgaatgcat ccgttggagg cgacggatgt gctatcggcg tggaaggcgt
     5581 cgcccgggta gaagaatacc gagtacggca tgggggcgtg gaactcggtg ctgtagaagt
     5641 tcttgtcctt tgacagtacg tgaaaggtgc ccaccggcgt cggagcgctt ttcgtgcccc
     5701 cgcgagcggc gaccggccca gcgatcacgt gcccggctcc gtccgtgagc caggcttgat
     5761 gcctcgacag atccatgcac gccttcgcgg tcactccaca cggtgtcgcc gacaccaagc
     5821 tcctggctgc tgctggttgc gtgcccgttg cgatcgcggc ggtgggcggg tggtctgcca
     5881 gaggggcgac cgacggtggg gcggcggccg cggtgctggc accgaaagcg cccagaagcg
     5941 gcgccaggac gagcccagct aggacaacaa cgccacgtgc catggacaat gcgatctctc
     6001 ctcaccacca cctggttgct ctgcggaaag gttccccgga tcgcagggat ttaggcatct
     6061 ggttcacgcc ccgtgaccgt gggctcgatc gcgggtaacg cgcggaggat caggaggtga
     6121 tgatcgtggt ggtgagcagg attgcggcca gcgccagggt gatccgcagt ggccgctcct
     6181 gacgctgcca ctggctgtcc caccagcccc cgtcccg
//
LOCUS       DASVXZ010000476         1831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_319623, whole genome shotgun sequence.
ACCESSION   DASVXZ010000476 DASVXZ010000000
VERSION     DASVXZ010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319623"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VF788_09855"
     CDS             complement(<1..609)
                     /locus_tag="VF788_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016337759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HEX8934478.1"
                     /translation="MTLDELITRTQSQTYSQEPLALLATASRQQQELAEVGEQLLDHF
                     VQEARTAGCSWSQIGTALGVSKQAAQQRHSALRSLISKFVGGVGSVTGPMFKRFTARA
                     RQVIVLGQEEARTLRHEYMGTEHVLLGLLAEGEGIAGQTLQRAGITLDAARAEIEKII
                     GRGEATPRGHVPFTPRAKKVLELALREAIHLGHSYLGTEHILL"
     gene            complement(730..1314)
                     /gene="dcd"
                     /locus_tag="VF788_09860"
     CDS             complement(730..1314)
                     /gene="dcd"
                     /locus_tag="VF788_09860"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEX8934479.1"
                     /translation="MLLSDRDVRVEIDAGRLGIDPFDEKLLQPSSIDVRLDRFFRVFV
                     NTRYTHIDPSLQQDELTSLVEPQGDEPFVLHPGEFVLGSTFEQITLPDDLAGRLEGKS
                     SLGRLGLLTHSTAGFIDPGFTGHITLELSNVANLPITLWPGMKIGHLCLFRLSSPAEH
                     PYGSAAAGSRYQGQRGPTPSRAFLNFQRVETRRQ"
     gene            1575..1648
                     /locus_tag="VF788_09865"
     tRNA            1575..1648
                     /locus_tag="VF788_09865"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1607..1609,aa:Gly,seq:ccc)
BASE COUNT          356 a          578 c          563 g          334 t
ORIGIN      
        1 gagcaggatg tgctcggtgc ccagatagct gtggcccagg tggatggcct cgcgcaacgc
       61 cagctccagt accttcttgg cccgcggcgt gaacggcaca tgacctcgtg gcgttgcctc
      121 accacggccg atgatcttct caatctcggc acgggcggcg tccagtgtga taccggcgcg
      181 ctgaagagtc tgcccagcga tgccctcacc ctcggcgagc aggcccagga ggacgtgctc
      241 ggtgcccata tattcatgtc gaagcgtccg ggcctcctcc tgaccgagca cgatcacctg
      301 tcgagcccgg gcggtgaacc gtttgaacat cggccccgtg accgacccga cgccgccgac
      361 gaacttgctg atcagcgagc gcaacgcgga gtggcgttgc tgcgcggcct gcttgctgac
      421 gccgagcgcc gtgccgatct gggaccacga gcagccggcg gttcgagcct cttggacgaa
      481 gtggtcgagc aactgctccc ccacttcggc aagctcctgc tgctggcgcg acgcggtcgc
      541 cagcagcgca agcggctcct ggctataggt ctgactctgt gttcgggtga tgagctcatc
      601 gagggtcata ccgtcaacta tcacttgacg aaatgtcttc gtcaaggact tcttgacgcc
      661 tggttcggac cggctcgatc acaccggttc gtccgggaag acctgccgtc gaccgccatc
      721 gcaccgtcct cactgccgcc gggtctcgac gcgctggaag ttgaggaagg cccgggacgg
      781 tgtgggcccg cgctggccct ggtagcggga gcccgccgcg gcactcccat acgggtgttc
      841 ggcggggctg gacaggcgga acaggcagag atgcccgatc ttcattcccg gccacagcgt
      901 gatcggcagg ttggccacat tggacagttc cagggtgata tgcccagtga atcctggatc
      961 aatgaacccc gccgtggaat gtgtcagcaa acccagccga ccgagggacg atttcccttc
     1021 cagccgcccg gccagatcgt cgggcaaggt gatctgctca aacgtcgaac cgagcacgaa
     1081 ctcgccggga tgaagcacaa acggctcgtc accctgcggc tccaccagcg aggtcagctc
     1141 gtcctgctgc agcgacgggt cgatgtgggt gtagcgggtg ttgacgaaga cccggaagaa
     1201 gcggtccagt cgcacgtcga tgctggaggg ctggagcagc ttctcatcga acggatcgat
     1261 gcccagtcgc ccggcatcga tctcaacccg cacatcacgg tcagacagca gcacggcgcc
     1321 accctagtcg gcaggcgact cgtcccggac ctctcagcac tggacagagg aggacatccg
     1381 gcagtcatag ggctccacca gcttcgccga ggagacgtac gcattcgctc ggatgtgcca
     1441 aggtcagcga gctcagtccg aaagtgccat ggtgtggtgc cggcacaacc acaccctttc
     1501 ctccggaggt caccgacggt gacatcagag gcagactggg tgggtgccgc gtgcgtgata
     1561 cactcagcgt cactgcgggt gtagtttaat ggtagaatga gagcttccca agctctagac
     1621 gcgggttcga ttcccgtcac ccgctccatc acaaaggtgc aacataaaat ctgagcttgt
     1681 tcaaattaac actcattctg aactccgcca acactgcttt cgattcacag ataaccagat
     1741 tgttatttcc tgtcatcatt gcacgcgatc agggcagcag agttagtgcg ggcacgtgag
     1801 ctgggcgcac aatgccaaag tcacggcgat c
//
LOCUS       DASVXZ010000477         7889 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_741929, whole genome shotgun sequence.
ACCESSION   DASVXZ010000477 DASVXZ010000000
VERSION     DASVXZ010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7889
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741929"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..987
                     /locus_tag="VF788_09870"
     CDS             <1..987
                     /locus_tag="VF788_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007033779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX8934480.1"
                     /translation="PLTGTPPLCTAGAWGTDSRTDDEYLLEVDGFLTPSTLAMGTIGA
                     APAVVLKQAPSFFDGTGLAVHQHFAVSDDGTRIPYFVVAPDSAAPPGGWPTLLYGYGG
                     FEISLQPSYRGALGRAWLARGGCYVSANIRGGAEYGPRWHSGALKHNRHLVYEDFATV
                     ARDLVARGLTTPPRLGAQGGSNGGLLVGVMLTQYPDLFGAIVGAVPLLDMLRYHVLLA
                     GASWMAEYGDPDDPVDREYLLRFSPYHQLRAEGRYPPTLLTTSTRDDRVHPGHARKLV
                     ARMREYGLPVTYYENIEGGHGGAADNEQAAFMSALAYEFLWRHLSADPDAHV"
     gene            1257..1778
                     /locus_tag="VF788_09875"
     CDS             1257..1778
                     /locus_tag="VF788_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934481.1"
                     /translation="MRLDGDGWRTFFDSYQREAFRLETLPSYSVGSEQVEYETFLATG
                     KLSIPDDDPWLARVRHFRRTGRWIGRVHVIRRPLTDYLRYEFAGYCRTIEAGEDVRIL
                     DLTEQPDPGLPAQDFWLFDDTAVVRMDYDPDGTQLGRELLEDVDPAPYVAWKRLALEN
                     AEPFTEDWVKRGG"
     gene            1775..2626
                     /locus_tag="VF788_09880"
     CDS             1775..2626
                     /locus_tag="VF788_09880"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934482.1"
                     /translation="MTLDPTHAARDRQDLAGALHDLRKASGLSGDRLARRCGMSQSKV
                     SRIETGRLLPSVVDVEQVLTALEVDDATRRELLALTRVANAEYEDMRASVRRGLHHRQ
                     RELAALEASATLMRHFLPTLVTGLLQIPEYMRAAMSTPVEPATGDVGKAIALKLERQA
                     VLYDKAKNFEFILTESAIRWQLCGPSIMAVQIDRLVSLSQQSNIRIGVLPLSAQVRNG
                     AFHTFVTYDRRLVTIELFTGRLVLRDPKDIDHYWALFDFFSVHALWTDEARNVLKALA
                     DTFRTSK"
     gene            3040..3558
                     /locus_tag="VF788_09885"
     CDS             3040..3558
                     /locus_tag="VF788_09885"
                     /inference="COORDINATES: protein motif:HMM:NF045158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934483.1"
                     /translation="MASITDEEFNRLLSVFEREALHLETRDAYGTAVELPHMAKWAAG
                     EPDDLDWLQGWCSTLREHVKAGRSVRRARVVSEPLCDYQRWSYTIAHPMVDAGEDIRW
                     VPRRVVSSVALPGNDFYLFDDRLIVFLIYAGNGLVADKVTSTDPADIRLCRSAFEAVW
                     KLSIPHRDYQPF"
     gene            3766..4707
                     /locus_tag="VF788_09890"
     CDS             3766..4707
                     /locus_tag="VF788_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HEX8934484.1"
                     /translation="MELFPSLPLESWADTKETLHRFAQVVGKVRLAASVRRNHWWNVP
                     FHLTGRGLTTRPMGGDPIFTIDFDLVAHQLLVSSITGQVVSFPLLGQSVASFYQDLMQ
                     ALDVLGVDVQVQHPHPFDLPDKGRPFAQDTEHASYDPAWVTRYWQVLSQVNLVLEEFA
                     AEFSGKTSPVHHFWHTFDIAVTRFSDRHIDQPASVDPVTREAYSREVISFGFWFGDKN
                     FPAPAFYSYTAPEPAGLAEEPLQPAVARWIDQGGSHLAVLPYDDVRGQADPKALVIEF
                     YESAYQAGARRAGWDADRLSCPGGVTDPVIDSPSSTG"
     gene            complement(4691..5158)
                     /locus_tag="VF788_09895"
     CDS             complement(4691..5158)
                     /locus_tag="VF788_09895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsI/CadI family heavy metal resistance
                     metalloenzyme"
                     /protein_id="HEX8934485.1"
                     /translation="MPRVQLALRVADVDSSVEFYRMLFGVGPAKRRPGYANFALTEPP
                     LKLVLIEGEPGQATVMDHLGIEVESTEQVRAATARLAGEGLDTAVEDATTCCYAVQDK
                     VWVHGPGAEPWEVYTVLADAPEATSIHPAGAPDSADCLCGTPTTRDEPVSQCC"
     gene            5238..5597
                     /locus_tag="VF788_09900"
     CDS             5238..5597
                     /locus_tag="VF788_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX8934486.1"
                     /translation="MSKQAGLPVACCSPMTREPLSIEEAGQLARMFKALGDPIRLRLL
                     SMIASHEGGEACVCELTGGFPVTGPTISHHLKVLREAGLVEGERRGTWIYYRALPQAL
                     GALAAVLQNERPDRVTV"
     gene            5594..6364
                     /locus_tag="VF788_09905"
     CDS             5594..6364
                     /locus_tag="VF788_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MIP/aquaporin family protein"
                     /protein_id="HEX8934487.1"
                     /translation="MSRRVDHQVASPDLARRLVAELVGTGLLVTVVVGSGIAAQKLSP
                     GQTGLQLLENSTATVFGLGVLILLFGPVSGAHFNPVVSAADWALGRRAGTGLRGREVA
                     SYLAAQVVGGIAGAVLANAMFDLAPLQTATTARASAGLWLGEVVATGGLIAVIFALAR
                     TGRAGLSAATVGCYIGAAYWFTSSTSFANPAVTVGRMFSDTFAGIAPASAPGFIVAQL
                     LGGLLGIGLVVVLYPDASRAAGDVMTSPAATASRTGAT"
     gene            6495..>7889
                     /locus_tag="VF788_09910"
     CDS             6495..>7889
                     /locus_tag="VF788_09910"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934488.1"
                     /translation="MPSLTCDVLVVGAGPAGLTTAIALARQDVDVLVVERHDGTSPFA
                     KATGVSTRTMELLRSWGLEQQVRAGAMQIQPGRAVSDTLVGPPRNPDLPCGYPTDEQA
                     LAVSPTRPCYCPQDHLEPVLLDHLRAHGGRVRFRTELTGFRTDGTGVYAELHGGPSGR
                     AESVRARYLIGADGPRSNVRAGLGVDVEDLGTIGEFVAVTFRADLTRRLPHVPSLLNV
                     VEVAGAEGLFAPNSTDDRWFYAREWHPDRGESIEDWTPQRCTELLRAGSGLPDLQPEI
                     LAVMPFAMGGHVATAFRAGRVFLVGDAAHRTTPACGIGMNIAIHGAHNLGWKLAWVLR
                     GWAGEVLLDSYEAERRPIGTVNVLRSLGKGRTVDGDGLAWDIGVRYTSAVIDSGTGDR
                     APHAWVRRGGSRISTLDLFDGRLTVLTGPRGGPWRRAVAELAAGGLPIVALSTSRELD
                     DEDGSFARHYRLRDT"
BASE COUNT         1301 a         2554 c         2585 g         1449 t
ORIGIN      
        1 ccgctgacgg gcacaccgcc gctgtgcacc gcgggcgcgt ggggcaccga ctcgcgcacc
       61 gatgatgagt atctgctcga agtcgatggt ttcctgaccc cgtccacgct ggccatgggc
      121 accatcgggg ccgctccggc cgtcgtgctc aagcaggcac cgtccttctt cgacggtacc
      181 ggtcttgccg tgcaccagca cttcgcggtg tccgacgacg gtacccggat cccgtacttc
      241 gtggtcgcgc ccgactcggc cgcaccgcct ggtggctggc ccacccttct gtacggctac
      301 ggcggattcg agatctctct ccaacccagc taccgcggtg cgctggggcg ggcctggctg
      361 gctcgcggag gctgctacgt cagcgccaac atccgtggcg gtgcggagta tggaccgcgc
      421 tggcattccg gcgcgctcaa gcacaaccgc cacctcgtgt acgaggactt cgccacggta
      481 gcgcgggatc tggtcgcccg cggcctcacc accccgcccc ggctgggcgc ccagggaggc
      541 agtaacggcg ggctgctcgt gggggtgatg ctcacccaat acccggacct gttcggcgcc
      601 atcgttggcg cggtcccgct gctcgacatg ctgcgctacc acgtgctgct ggccggcgcg
      661 tcgtggatgg ccgagtacgg tgatcccgac gatccggtcg accgcgaata cctgctgcgt
      721 ttctccccat accaccagct gcgcgccgaa ggccgctacc caccgaccct gctcaccacc
      781 tccacccgtg acgaccgcgt gcatcccggc catgcccgca agctggtggc ccggatgcgg
      841 gagtacggcc tgccggtcac ctactacgag aacatcgagg gcgggcacgg cggcgcggcg
      901 gacaatgagc aggccgcctt catgtccgca ctggcctacg aattcctctg gcgccacctt
      961 tcggctgacc cagacgcgca tgtgtgatcg gactttccga ctctatgcga caacgcgcat
     1021 ccaccttgac gctctgtagc ttgtgcgcat accgtcaggt cacgtgcttg cataaaaggg
     1081 gagtgacatg gagctgaccc agattgccgg tggggattgc atgcgtgacg actgcccaac
     1141 tatcttcagg acagacaagg acacgattgc cgtccagggg cccatcgtgc acagggagac
     1201 gccggtaggt gaggcggtcg tcgaaatccc gatagccgtg ttcctggagg cggctcgtgc
     1261 gcttggacgg tgacggctgg cgtacgttct ttgattcata tcaacgagaa gcattccgcc
     1321 tcgaaacact gccctcgtac agtgtgggca gcgaacaggt cgaatatgag actttcctgg
     1381 cgacgggaaa gctgagcatc ccagatgacg atccctggct cgcacgtgtt cgtcattttc
     1441 gccgaaccgg tcgctggatt gggcgggtgc atgttatccg ccggccactg acggattact
     1501 tgaggtatga attcgcgggc tattgccgca ccatcgaagc cggcgaggac gtgcgcatcc
     1561 tcgatctcac cgagcagccc gacccaggtc tgcccgcgca agacttctgg ctcttcgatg
     1621 atacggctgt cgtacgcatg gactatgacc cagatggcac tcagctggga cgcgaactcc
     1681 ttgaagacgt cgatcctgct ccatatgtag cctggaagcg attggctctg gaaaatgctg
     1741 agccgttcac cgaggattgg gtgaagcgag gagggtgaca ctcgacccca cgcatgccgc
     1801 gcgagatcgc caagacttgg cgggcgcact gcatgacctg cgcaaagcgt cgggcctgtc
     1861 tggcgacaga ctggcccgac gctgcgggat gagtcagagc aaagtgagcc gcatcgagac
     1921 cggtcgtttg ctacccagcg tcgttgacgt ggaacaggtg ctgaccgcgc ttgaggtgga
     1981 cgatgcgacc cgacgcgagc tgctggcgct tactcgcgtt gccaatgctg agtatgagga
     2041 catgcgggct tcggtacgcc gagggctcca ccaccggcag cgtgagttgg ccgcgctgga
     2101 agccagcgcc acactgatgc ggcactttct gcccaccctc gtcacagggt tacttcaaat
     2161 acctgagtac atgcgtgcgg ccatgagtac tcctgtcgaa ccggcgacag gtgacgttgg
     2221 caaggcgata gcgctgaagc tggaaagaca agcggtgctg tacgataaag ctaaaaattt
     2281 cgagttcata ctgaccgaat cggcgatacg atggcaactg tgcgggccgt cgatcatggc
     2341 ggtacagatc gaccggctcg tgtcactgtc gcagcagtcg aatatccgaa ttggtgtact
     2401 accactttcg gcgcaggtcc gcaatggtgc gttccatacc tttgtcacct atgatcgtcg
     2461 tctggtgacc attgagctgt tcaccggtcg actcgtgcta cgggacccca aggacatcga
     2521 tcattactgg gccctctttg atttcttcag tgttcacgcg ctgtggacgg acgaggctcg
     2581 gaatgtgctg aaggcactgg ccgacacatt ccgaactagc aaataattcg agcacgcgca
     2641 tagcgttgga acttgccgtc gcctcgtcca taaggtggct gcatgaacag atgaccaacg
     2701 ccgcgtcggg gtggtgccga tggacctagg tggccgggat gtgttggcag tgaaacggct
     2761 actcgagcgg aaagattcac taaagatgag tatacctcgg agagtcgttg tcaaagggcg
     2821 agagggggtt gttgcgaccg tcgcggtgat gatatatcga ggagaggtat ggatgtccat
     2881 cgtgccacca ttcacgtggg aggcgattat ggagctcgga aaggttgacg agctgataca
     2941 cctgttggga ctggctcggg aggaggcgag ccggtcggca acggtgggcg tgacagggac
     3001 agatcgtggg gacaaagggt tgtccgggag gacgtaatcg tggcatcaat cacggatgag
     3061 gagttcaacc ggttactgtc agtcttcgag cgggaggctc tccacctgga aacccgtgat
     3121 gcctatggga cagcggtgga actgcctcac atggcgaagt gggcggccgg tgagcctgat
     3181 gatctggact ggcttcaagg ttggtgctcc acactgcgcg aacatgtcaa ggccgggagg
     3241 tcggtgcgcc gcgcccgggt cgtctccgaa ccactctgcg attaccaacg ctggtcctac
     3301 accatcgccc atccgatggt cgatgcaggt gaagatatcc gctgggttcc ccgccgagtt
     3361 gtgtcatcgg tggctcttcc cgggaacgat ttctatctat tcgatgaccg gttgatcgtt
     3421 tttctgatct acgccgggaa cggcttggtt gccgacaagg ttacgtccac cgatccagcc
     3481 gacatccggc tttgccggtc agctttcgag gctgtgtgga agctgtcgat tccccaccgc
     3541 gattaccagc ccttctagct ccgccaggca aggatagagg gggtcattgg cgtggtgatg
     3601 gcgatcagga actttaggcg ttgaacgccg cctccacgtc cccgcgggtg cgatccgtag
     3661 gcactgacac cgcatcgacg tcgctcagct caaggcgtgg cctgccacat ccatgccaca
     3721 cggtaccggc gcagctcgtc atggcagcgc ggctagggtc agccaatgga gttgttccca
     3781 tcgctgccgc tggagtcctg ggctgacacc aaggagacgt tgcatcggtt cgcccaggtg
     3841 gtcggcaagg tccggctggc cgccagcgtg cggcgtaacc actggtggaa cgtgccattc
     3901 cacctcactg ggcggggatt gaccactcgc ccgatgggcg gcgacccgat ctttacgatc
     3961 gacttcgacc tggtggcgca ccagttgctg gtgtcctcga tcaccggtca ggtggtgtcg
     4021 ttcccgctgc tcgggcaatc ggtagcgtcg ttctatcaag acctgatgca ggcgctggac
     4081 gtgctcggcg tcgacgtaca ggtgcagcat ccgcacccct tcgacctgcc ggacaaaggc
     4141 agaccgttcg cccaggacac cgagcacgcg tcttacgacc cggcatgggt cacccggtac
     4201 tggcaggtgc tcagccaggt caatctcgtg ctcgaggagt tcgccgccga gttctccggc
     4261 aagaccagcc cggtgcacca cttctggcac acgttcgata tcgcggtcac ccgattttct
     4321 gaccgccata tcgaccaacc cgccagcgtt gatccggtca cccgggaggc ttactcccgg
     4381 gaggtcatca gcttcggctt ctggttcggc gataagaact tcccagcacc ggcgttctac
     4441 tcctacaccg cgccggaacc ggccgggttg gccgaggagc cgctgcagcc cgccgtcgcc
     4501 cgctggatcg accagggggg cagccacctg gccgtcctgc catacgacga cgtgcgtggc
     4561 caagccgatc ccaaggcctt ggtgatcgag ttctacgaaa gcgcctacca ggctggtgct
     4621 cggcgcgccg gctgggacgc cgatcgcctg agctgccccg gcggagtgac cgatccagtg
     4681 attgattccc ctagcagcac tggctaaccg gttcgtcacg ggtggtgggg gtgccgcaga
     4741 ggcagtccgc ggaatcgggt gccccagccg ggtggatgct ggtggcctcg ggagcgtcgg
     4801 cgagcacggt gtagacctcc cacggctccg cgcccggtcc gtgcacccac accttgtcct
     4861 gaacggcata gcagcacgtc gtggcatcct ccaccgcggt gtccagtccc tcaccggcca
     4921 gccgcgcggt ggccgcgcgg acctgctccg tcgactcgac ctcgatcccc aagtggtcca
     4981 tcacggtggc ctggcccggc tcgccttcga tgagtaccag cttgagtggt ggctcggtga
     5041 gcgcgaaatt tgcgtaaccg gggcgccgct tggccggtcc gaccccgaag agcatccggt
     5101 agaactcgac cgagctatcc acgtctgcca cccgcagagc tagctgcacg cgaggcatcg
     5161 tctcctcctt gtttagataa ctgtctaacc tcagtcgcaa gattgcgtcc tgattagaag
     5221 ttagtcaagg tagagacatg tcgaagcagg cggggctccc ggtggcgtgc tgctcaccga
     5281 tgacccgcga gccgctgtcg atcgaggagg cagggcagct cgcccggatg ttcaaggccc
     5341 tcggtgaccc gatccggctg cggctactca gcatgatcgc tagccacgag ggcggtgagg
     5401 cgtgcgtgtg cgagctgacc ggcggcttcc cggtgaccgg tcccacgatc agtcaccacc
     5461 tcaaggtgtt gcgcgaggcc ggcctggtcg aaggcgagcg ccgagggacg tggatctact
     5521 accgagcgct gccgcaggca ttgggtgcgc tggcggcggt actccagaat gagcggcccg
     5581 accgggtgac ggtgtgagcc gccgcgtgga tcaccaggtg gcctccccgg atctggcccg
     5641 gcggctggtt gccgagctgg tcggcaccgg gttgctggtg accgtggtgg tcggctcggg
     5701 catcgccgcg cagaagctgt ccccgggtca gaccgggctg cagctgctgg agaactccac
     5761 cgccaccgtc ttcgggctcg gggtgttgat cctgctgttc ggcccggttt cgggtgccca
     5821 cttcaacccg gtcgtctccg ctgccgactg ggcgctcggc cgccgtgcgg gcaccggact
     5881 gcgtgggcgc gaggtcgcca gctaccttgc ggcgcaggtg gtcggcggga tcgccggtgc
     5941 ggtgctggcc aacgccatgt tcgatctcgc cccgctgcag accgccacca ccgcccgggc
     6001 cagcgcgggg ctgtggcttg gtgaagttgt cgcgaccggc gggctgatcg ccgtgatctt
     6061 cgccctggct cgcaccggac gcgccggcct gtccgcggcc accgtgggct gttatatcgg
     6121 cgccgcttac tggttcacct cctccacgtc cttcgccaac ccagccgtga ccgtggggcg
     6181 gatgttcagc gacaccttcg ccggtattgc tcccgcttcc gcccccggat tcatcgtcgc
     6241 gcagctactc ggtgggctgc tcggcatcgg cttggtcgtc gtgctgtacc ccgatgccag
     6301 ccgcgcggcc ggtgatgtca tgacctcacc ggccgcaacg gcgtcccgaa caggagcgac
     6361 gtgaccggtg ccccggaggt cctgttcgta tgcgtgcaca acgcaggccg ttccagatgg
     6421 ccgccgcgcg cacggtatct gcacgcccca gacaaccctc tggttatcga agtccaccat
     6481 tgcaggagcc tccgatgcca tcgctcacct gcgacgtcct ggtcgtcggc gccgggccgg
     6541 ccggtctgac caccgcgatc gcattggccc gccaagacgt ggacgtgctg gtcgtcgaac
     6601 ggcacgatgg cacgtccccg ttcgccaagg ccaccggtgt gagcacccgc acgatggagc
     6661 tgcttcgcag ttggggcctc gagcagcagg tccgtgcggg cgccatgcag atacagccgg
     6721 gccgggcggt gtccgacacc ctggtcggcc cgccccgtaa tcccgacctg ccctgcggct
     6781 acccgaccga cgagcaagca ctggccgtca gccccaccag gccttgttac tgcccgcagg
     6841 accacctcga gccggtgctg ctggatcatc tgcgtgccca cggcggccgc gtccggttcc
     6901 gcaccgagct gaccggattc aggactgacg gcaccggtgt gtacgcggaa ctgcacggcg
     6961 gtccgtcggg acgcgccgag tcggtccggg cccggtacct gatcggcgcg gacgggccgc
     7021 gcagcaacgt gcgagctggc ctgggcgtcg atgtcgagga cttgggcacg atcggcgagt
     7081 tcgtcgcggt gacctttcgc gcggacctca cccgccggtt gccccacgtc ccgtccttgc
     7141 tcaacgtcgt cgaggtcgcg ggcgccgagg gcttgttcgc gcccaacagc accgacgacc
     7201 gatggttcta cgcccgcgag tggcatcccg accgcggtga gtcgatcgag gactggactc
     7261 ctcagcggtg caccgagctg ttgcgagctg gcagcgggct acccgacttg cagcctgaga
     7321 tcctcgcggt aatgccgttc gccatgggcg gccacgtcgc cacggcgttc cgcgccgggc
     7381 gggtgttcct cgtcggcgac gccgcacacc gcaccacgcc ggcctgtggc atcggtatga
     7441 acatcgcgat tcacggcgcg cacaacctgg gctggaagct tgcctgggtg ctccgcggct
     7501 gggccggtga ggtactgctc gacagctacg aagccgagcg ccgaccgatc ggcaccgtga
     7561 acgtgctgcg ctcgctgggg aagggccgca ccgtcgacgg cgacggccta gcctgggaca
     7621 tcggagtccg ctacacctca gcggtgatcg actccgggac cggagaccgg gctccgcatg
     7681 catgggtgcg gcgcggcggg tcccggatct cgacgcttga cctgttcgat ggccgtctca
     7741 cggtgctcac cgggccccgg ggcggaccgt ggcgcagagc ggtggccgag ctcgccgccg
     7801 gcggcctgcc gatcgtggcg ctgtccacaa gccgcgagct ggacgatgag gacggctcgt
     7861 tcgcccgtca ttaccgcctg agagacacg
//
LOCUS       DASVXZ010000478         1888 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_230981, whole genome shotgun sequence.
ACCESSION   DASVXZ010000478 DASVXZ010000000
VERSION     DASVXZ010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230981"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1888
                     /locus_tag="VF788_09915"
     CDS             <1..>1888
                     /locus_tag="VF788_09915"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8934489.1"
                     /translation="SHFNQSFTVELTEDLNQEALSAAVDAVVAHHPVLRMRFSQLEGR
                     WCQEVAPTGDVVLERSDLSDLAHGDRPAAVAEAAWAAQSGLDIADGPVLRVVLFDTGP
                     GDRPWLFLVAHHLVVDGVSWRILLGDLETAYQQARAGEPIQLEPVSTAFTQWAHRWMA
                     HVQAGGLDDDLGYWSALAHDAVSRDAVAQLPVARDGVNTAGSTRAVVVGLSRDETDAL
                     LHRVPAVYRTQINDVLLSALGWVLAGWTGRDQVLIALEGHGREEILPGVELSRTVGWF
                     TSLFPVALRVERAGWGELLKSVKEQLRAIPHRGLSYGALRYLSPGSGLDGEISPQISM
                     NYLGQWGGTTESDGLYRGWVDGLAPDQAPDSVRPYLLDVIGAVTNGELQLSWTYSENV
                     HELATVENLAAEMIVTLRQIVAHCASPDAGGCTPSDFPLARLSQAQLDAVVGAGRDVE
                     DLYRLTPLQAGMVFHSLLDPDSAAYVDQTRLRISGIADPRAWGTAWQQVVDRTPILRS
                     AVVWQGVDEPVQIVHRQPSLPITHHDWRQLPEREQQQELDRLAAQERAEIELGVPPLL
                     RLVIARVSADEVVVVWTFHHVILDGWSVAAVFAEVCEHYAAIMHDRAPVPIARRPFRD
                     YLHWL"
BASE COUNT          284 a          540 c          700 g          364 t
ORIGIN      
        1 gtcgcatttc aaccagtctt tcacggtgga gctgaccgag gatctcaacc aggaggcact
       61 gtcagccgcg gtggatgcgg tggtggccca tcacccggtg ctgcggatgc gtttctccca
      121 gcttgagggc cggtggtgcc aggaggtcgc tccgaccggt gatgtggtgt tggagcgcag
      181 tgatctttcg gatctggcgc acggtgatcg gccggccgcc gtggcagagg cggcgtgggc
      241 ggcccagtcc ggattggaca tcgccgatgg cccggtgttg cgggtggtgc tcttcgatac
      301 tggccccggt gaccggccct ggttgttcct cgtggcgcac cacttggtgg ttgacggggt
      361 gtcctggcgg atcctgctgg gtgacctcga aactgcctac cagcaggccc gagccgggga
      421 accgatccag ctggagccgg tgagcaccgc gttcacgcag tgggcgcacc ggtggatggc
      481 ccatgttcag gccggtgggc tcgatgatga cctgggatat tggtccgcgc tggcccacga
      541 cgcggtgtct cgggacgcgg tggcgcagtt gccggttgcc cgggacgggg taaacacggc
      601 cggttcgacc cgcgcagtgg tggtgggctt gagccgggat gagacggatg cgttgttgca
      661 tcgggtgccg gcggtgtatc gcactcagat caatgatgtg ttgctcagcg cgctggggtg
      721 ggtgctggcg ggctggaccg ggcgggatca ggtgctgatc gcgctggaag gacacggccg
      781 cgaggagatc ctgcccgggg tggagctttc ccgcaccgtg ggctggttca cctcgctgtt
      841 cccggtggcc ttgagggtgg agcgtgcagg ctggggtgag ctgctgaaat cggtgaagga
      901 gcagttgcgg gccattccgc atcggggcct cagttacggg gcgttgcgtt atctatcccc
      961 gggcagcggg ctggatgggg agatttcccc gcagatcagt atgaattatc tcggccagtg
     1021 gggtggcacg accgagagtg atgggctcta tcggggctgg gtcgatgggt tggcaccaga
     1081 tcaggcaccc gacagcgtcc ggccctattt gctggatgtg attggtgcgg tcaccaacgg
     1141 ggaattgcag ctgagttgga cgtattcaga gaacgtgcac gagctggcca ccgtcgagaa
     1201 cttggccgcg gagatgatag taacgttgcg gcagatcgtg gcgcattgcg cgagccccga
     1261 tgcgggtggg tgcactccgt ctgatttccc gttggcccgg ttgtcacagg ctcaactcga
     1321 tgcggtggta ggcgctggcc gcgacgtcga ggacctctac cggctgaccc cgttgcaggc
     1381 cggaatggtg ttccacagcc tgctcgatcc cgattcagcg gcctatgtgg accaaacccg
     1441 gttacggatt tccgggatcg ccgatccacg ggcctgggga acggcgtggc agcaggtggt
     1501 ggaccgcacc cccatcctgc gtagcgcggt cgtctggcag ggcgtcgatg aaccggtgca
     1561 gatcgtgcac cgccaaccca gcctgccgat cacccatcac gactggcgcc agctccccga
     1621 gcgggaacaa cagcaggagc tggaccggct cgcggcgcag gaacgggccg aaatcgagct
     1681 gggtgttccc ccgctgttgc ggctggtgat cgcacgagtg tccgcagatg aggtcgtggt
     1741 ggtgtggacc ttccaccatg tgatcctcga tggctggagc gtggcggcgg tgttcgcaga
     1801 ggtctgcgag cactacgccg cgatcatgca cgaccgggca cccgtaccga tcgcccggcg
     1861 cccgttccgg gattacctgc actggctg
//
LOCUS       DASVXZ010000479         3518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1639049, whole genome shotgun sequence.
ACCESSION   DASVXZ010000479 DASVXZ010000000
VERSION     DASVXZ010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3518
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1639049"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..927)
                     /locus_tag="VF788_09920"
     CDS             complement(<1..927)
                     /locus_tag="VF788_09920"
                     /inference="COORDINATES: protein motif:HMM:NF016150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HEX8934490.1"
                     /translation="MAGSNAVDAQPTGAIAVSARSLAPDLARGAMLLLIALANACLYQ
                     YGNSALGHGLWLRGSPLADQVLLLLETIFVRDRAYPMYALLFGYGMVQLLRRHTSKGV
                     DQSTVRRLVRRRGWWMVLIGFGHALLLFWGDIIGAYGWIAVLFAGVLFRVRDRTLLIL
                     SALWVVPIALFRGFEHRLSPLHERASATPDLLHAAVLRVLLWMQGSVIGSVFMLVPAV
                     LLGVWAARRQLLDQPQRHRRFLVRAAVVGVGLAVIGGLPWALVRASWWTPSSEVVALL
                     AGGAHTFSGYAGGVAYGAIAGLVTIRLQRRGPS"
     gene            complement(981..1682)
                     /locus_tag="VF788_09925"
     CDS             complement(981..1682)
                     /locus_tag="VF788_09925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934491.1"
                     /translation="MTPWVWFLIAGLAAAAGSALLAADRGQHSAHQRERRRWAALRGW
                     RFTLSDPVITERWRHGVIAGTGLARDLVTGSLFTPLGRRLVQIFDLEQGGHVSHVVVA
                     VQRRVWRADLVMELWLPDQPLPQDPDLIMLGSAGDRVALVTAPDQARPLVTPEFVFAA
                     NALGTDIPVAWLEQDWVLAAAPCTATPTRLERLLRALDEIADLLDIAAVDDKVEAADL
                     AELSGWAPNEFSPRK"
     gene            complement(1817..>3518)
                     /locus_tag="VF788_09930"
     CDS             complement(1817..>3518)
                     /locus_tag="VF788_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010241393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8934492.1"
                     /translation="NMIKPMLARGELRMVGATTLDEYRKHIERDAALERRFQQVLVGE
                     PSVEDTIGILRGLKERYEVHHGVRITDAALVAAATLSDRYITARFLPDKAIDLVDEAA
                     SRLRMEIDSRPVEIDEVERAVRRLEIEEMALEKESDPASVQRLAALRAELADRREQLA
                     ELTTRWQNEKVAIEATRELKEQLEQLRGESDRAERDGDLGLAAELRYGKIPALEKQLA
                     EATATARDPQVMLKEEVGPDDVADVVSSWTGIPAGRLLEGETAKLLRMEDALSRRVVG
                     QPEAVRAVSDAVRRARAGVADPDRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMV
                     RIDMSEYSEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYSVVLLDEVEKAHSDVFD
                     VLLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSAALADETLTERQRTDAVLGMVRRH
                     FKPEFLNRLDDLVVFHSLSTEELTAIVDIQIGQLGRRLAARRLNLEVTAAAKEWLAMG
                     GFDPLYGARPLRRLVQSAIGDQLAHELLAGEITDGDTVRVDLDNAAGGGTGALTVTRT
                     "
BASE COUNT          597 a         1251 c         1148 g          522 t
ORIGIN      
        1 ggacgggccg cggcgttgca ggcggatggt gacgagtccg gcgatcgcgc cgtaggccac
       61 tccgccggcg taaccggaga aggtgtgcgc accgccggcg agcaaggcca cgacctcgga
      121 tgacggcgtc caccacgacg cccgcaccaa cgcccagggc aggcctccga taacagccag
      181 ccccacgccc accaccgccg cgcgtaccag gaatctacgg tgccgctgcg gctggtcgag
      241 cagctgccgc cgagctgccc agactccgag caacacggca ggcaccagca tgaacaccga
      301 gccgatgacg ctgccctgca tccataacag cacccggagt actgccgcat gcaacaggtc
      361 aggcgtggcg ctcgccctct catgcagcgg gctcaaccga tgctcgaacc cgcggaacag
      421 tgcgatcggc accacccaca acgcgctgag gatcagcagc gtccggtctc ggacccgaaa
      481 cagcaccccg gcgaacaaga ccgcgatcca tccgtaggcg ccgatgatgt ccccccaaaa
      541 cagcaggagg gcatgaccga agccgatgag caccatccac catccccgtc ttcggacgag
      601 cctgcggacg gtgctctgat cgacgccctt gctggtgtgc cgccgcagca actggaccat
      661 gccgtaaccg aacagcaggg catacatggg atatgcacga tcccgcacaa agatcgtttc
      721 aagcaggaga aggacctggt cggccagtgg gctgcctcgc agccacaggc cgtggcccaa
      781 ggcactgttc ccgtattggt agaggcaggc gttggccagc gcgatgagca acagcatcgc
      841 tccgcgggcc agatccggcg caagcgatcg ggccgacacc gcgatggccc ccgttggctg
      901 tgcgtcgaca gcattggatc cagccatgac cctccccccg aagagctgca tgggggagat
      961 cgcgcagcga cacccaatcg ttactttctg ggactgaact cgttaggggc ccagccggac
     1021 agctccgcaa gatcggcggc ctcgaccttg tcgtccaccg cagcgatgtc gagcaggtcg
     1081 gcgatctcgt cgagggcgcg gagcagccgc tccaaccggg tgggcgtggc ggtacacggc
     1141 gccgcggcca gcacccagtc ctgctctaac caggcaaccg ggatgtcggt gcccagtgcg
     1201 ttggctgcga agacgaattc cggcgtcacg agcgggcgag cctggtcggg agcggtgacc
     1261 agggcgaccc ggtcaccggc ggagccgagc atgatgaggt ctggatcttg aggtagcggc
     1321 tggtcgggca gccacaattc catcaccaaa tccgcacgcc aaacccgccg ctgcaccgcg
     1381 accaccacgt gggagacgtg gccgccctgc tcaaggtcga aaatctgcac caagcgacga
     1441 cccaacgggg tgaacaagct gccggtcacc agatcccggg ccagccccgt gccggcgatc
     1501 acaccgtgac gccaacgctc ggtgataacc gggtcggaca gcgtgaaccg ccacccacgc
     1561 agcgccgccc agcgacgacg ctcccgctgg tgcgcgctgt gctgtccgcg gtcggcggcc
     1621 agcagcgcgc tcccggcagc agcggccagc ccagcgatca agaaccatac ccacggcgtc
     1681 accggacgag cctagattct tccctcgtcc atcgccggga gcacacgccg ccacccctcc
     1741 cggcatggag acatatcggg gtcctccgga ccccgtcaac cccgatatgt ctccatgtcg
     1801 ggtggcttct cgttgatcag gtgcgggtga cggtgagggc tccggtgccg cctccggcag
     1861 cgttgtcgag atctacccgg acggtgtcgc cgtcggtaat ctcaccggcg agtagctcgt
     1921 gggcgagctg gtcaccgatc gccgactgca ccagccggcg tagcgggcgg gccccataca
     1981 acgggtcgaa ccctcccatc gcgagccact ccttagccgc ggccgtcacc tccaggttca
     2041 ggcgccgggc ggccaaccgg cggccgagtt gcccgatctg gatgtccacg atcgccgtca
     2101 gctcttcggt ggacagtgag tggaacacca ccaggtcgtc gagccggttg aggaactctg
     2161 gcttgaaatg ccggcggacc atcccgagca cggcgtcggt gcgctggcgc tcggtgagcg
     2221 tctcgtcggc cagcgcggcg gagcccaggt tggacgtgag caccaggatg gtgttgcgga
     2281 agtccaccgt gcggccctgc ccgtcggtca gccgcccgtc gtcgaggacc tgcagcagca
     2341 cgtcgaagac gtcggagtgg gctttttcca cctcgtcgag cagcaccacg ctgtagggcc
     2401 gccggcggac cgcctcggtg agctggccgc cctggtcgta gccgacgtat ccgggtggcg
     2461 cgccgaccag ccgggccacg ctgtgtttct cgctgtattc gctcatgtcg atgcgcacca
     2521 tggcgcgctc gtcgtcgaac aggaactccg caagcgcttt ggccagctcg gtcttgccga
     2581 cgccggtagg gcccaggaat aggaacgatc cggtcggacg gtccggatcg gcgaccccgg
     2641 cacgggcccg gcggaccgcg tcggacaccg ctcgcaccgc ctcgggttgt ccgaccaccc
     2701 ggcgactcag cgcgtcctcc atccgcagca gcttggcggt ctcgccctcc agcaaccgcc
     2761 cggccgggat cccggtccag gagctgacca cgtcggccac atcgtcgggg ccgacctcct
     2821 ccttgagcat cacctgcggg tcacgggccg tcgcggtggc ctcggcgagc tgcttctcca
     2881 gcgcggggat cttgccgtag cgcagctcag cggccaggcc gaggtcaccg tcgcgctcgg
     2941 cccggtcgga ctcgccgcgc agctgctcga gctgttcctt gagctcccgg gtggcctcga
     3001 tggcgacctt ctcgttctgc cagcgggtgg tcaactcggc cagttgctcc cggcggtcag
     3061 ccagttcggc gcgcagcgcg gccaggcgct gcaccgaggc cgggtcggac tccttctcca
     3121 gcgccatctc ctcgatctcc aggcggcgca ccgcgcgctc cacctcatcg atctcgacgg
     3181 gcctggaatc gatctccatg cgcaaccggg acgcggcctc atcgaccagg tcgatggcct
     3241 tgtccgggag gaagcgagca gtgatgtagc ggtcggagag ggtcgcggcg gcaaccagcg
     3301 cggcgtcggt gatccgcacc ccgtggtgca cctcgtagcg ctccttgagc ccgcggagga
     3361 taccgatggt gtcctcgacg gacggttcac cgacgaggac ctgctggaag cgtcgctcca
     3421 gcgcagcgtc gcgctcgatg tgcttgcggt actcatccag cgtggtcgca ccgaccatcc
     3481 gcagctcacc acgggccagc atcggtttga tcatgtta
//
LOCUS       DASVXZ010000480         2380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_231479, whole genome shotgun sequence.
ACCESSION   DASVXZ010000480 DASVXZ010000000
VERSION     DASVXZ010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231479"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..760)
                     /gene="yidD"
                     /locus_tag="VF788_09935"
     CDS             complement(266..760)
                     /gene="yidD"
                     /locus_tag="VF788_09935"
                     /inference="COORDINATES: protein motif:HMM:NF013932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX8934493.1"
                     /translation="MDTGDMACLRRRRYGPRYYYPYRPRPVGGSCLRDACLLDVGCCL
                     GESLSDNCLVLTILAAPQLTTVLIGKARTLRQHETTEGSQLTALLIAGIRTYQQEISP
                     RRAPCCHFTPTCSQYAAQALVSHGTRQGSWLALKRLVHCRPGRHIIHDPVPPPPAKLF
                     QPKV"
BASE COUNT          439 a          696 c          757 g          488 t
ORIGIN      
        1 tgccgacgct gactacctcg cacagcttcg caaggcaccg accaacgtca accgggacga
       61 gctaaccgat gatgcgtgag ctcattgtgg gactgctagt gcgagatggc cacttggcgg
      121 ccatgaagtc ccggcggtct gcataatagt catcacataa gaaatgagac caatgagcaa
      181 cctgatttgg gtggacgtgt gtcggcggca gatggacact actccgcgaa cgacagcgcg
      241 actgatcttc aatcagaccc ttcaatcaga cctttggctg gaataacttg gccggcggtg
      301 gtggcacggg atcgtggatg atatgcctgc cgggtcggca gtgcaccagt cgcttgaggg
      361 cgagccagct cccttgacga gtgccgtggc tcactaacgc ttgtgcggcg tactgcgaac
      421 aggtcggggt gaaatggcaa cacggcgccc ggcgggggct aatttcctgt tggtaagttc
      481 ggatgccggc aatcagcaga gctgttagtt gcgagccctc cgtagtttcg tgttgacgga
      541 gggtgcgtgc cttcccgatc aacactgtgg tgagctgcgg ggccgcgaga attgtcaaga
      601 caagacagtt gtcgctgagg ctttcgccca agcagcaccc gacgtcgagc aggcaggcgt
      661 cgcgcagaca tgacccgccc accggccgag gccgataggg atagtagtag cgggggccgt
      721 agcgtcggcg ccgcaagcat gccatatcgc cagtgtccat tacttctgtg ccgggtgaac
      781 cgcgcaacca agactcatgg cttggtgtga ccttcctcac ggccgtggcg tagtggcgag
      841 cctgcgcggc ttggctccag gtggttcatg ctcgctacgc tgcgggtcgc ttcattcggc
      901 accctgtcgc gaagcggcac tagatggtca ccggcgtgtc gtgagcgaca caagcactcc
      961 aggattgttg ctcgataccg cgtcgacaca cctaactatc cgggtttctc caccgcctcg
     1021 aggtcggcgt ggctggcgat ccgctagagc acatggtggt gtcttgagtt taagcgcagg
     1081 caccacaatg tggcggaact agttctcagc cggttgtcac atcaagcacg aagtttgcat
     1141 cagtttggtt cggcacgttg gtcggtccct ggacagtgcc atcgccacgg gcattacgat
     1201 aggttcctgt gccacccacg atcgcacatg gtagagtttc gcccctgccg aagagggccg
     1261 cactgtcaag caagcattcg gccgaaatct gtccacgatc gagaacaaac gtagcggtgc
     1321 agaacacatc gccggcggcg gtggcgtttc cactgaacgt ggtgcactgg cctgccgtgt
     1381 gcccaacttt ggttcctccc gcgtgatcga ataagtcgcc ggagaagata aattgatccc
     1441 ccgggcccgt ccctgcgacc gaggtccaaa gcgccctgct gcgtgtcatg ctcgaagaag
     1501 cggagcgtcg tgacaccgcc tgcgtctggg tccggtgttg ccttctggcc gcacgctccg
     1561 agcatgggcg gcaaaagagc ggcaagaaat gcgacgattc ccaccttttt catccacggc
     1621 accgttttgc gcataggcct gaataggatg acactgtccg ttgcctccgt aagtcaaacc
     1681 attgtaaatt gattggcgtg tcgagtacgc caggaccgaa ttattgccgg tttcgcgcgg
     1741 cggcgtcgcc gctaatcgcg cccatcaggt ctctcgttgt ctccagcctg cggatttaat
     1801 gcggcaccaa aagggcgtgc cgcggcatgg atgccttctc gtgtccgacc acggctgtcg
     1861 aagtaccaga cctcatcacg cttccacaat ccttcacttc ttttggattc accattgtca
     1921 cggacttgac acgcagagtg tcggtttgct gacagggcag gcgccgagct atcagtggct
     1981 tcaccgggca cctgtcaagg acgtggcagc aggtgcgctc gtgcgcccgc gcacggcggt
     2041 caggtagtgc tgtagagaac gacgcgggat ctggtggccg atcggcttct cgacggtgtc
     2101 gagccgcatc cggatgtgcg gtcgagcttt cggcgctgcg ctcgctcggc aggctgtcga
     2161 ccgacctgcc tggtgagctg accagcctcg tcggtcgatc cgcggagctc gtggaactcg
     2221 gtgcgctgct ccggtgagta cggctgttga cgctgaccgg cgcgggcggc tgctgcggta
     2281 agacccgcct ggcgttgcag cagccgtcgg cgcgatagag ggcagcttga cgtgatgtgg
     2341 tgggagcagg ctgggttatc tatctacgcg cgccggggcc
//
LOCUS       DASVXZ010000481         4352 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1575786, whole genome shotgun sequence.
ACCESSION   DASVXZ010000481 DASVXZ010000000
VERSION     DASVXZ010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1575786"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VF788_09940"
     CDS             complement(<1..312)
                     /locus_tag="VF788_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX8934494.1"
                     /translation="MDSIDRQIVARLVTDARSSYAEIGGVVGLSAPAVKRRVDKLLET
                     GVLRGFTAVVDPGALGWGTEAFVEVHCRGNVAPSRIREGLAALPEVVAAYTVSGAADA
                     IV"
     gene            447..1235
                     /locus_tag="VF788_09945"
     CDS             447..1235
                     /locus_tag="VF788_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase-related protein"
                     /protein_id="HEX8934495.1"
                     /translation="MCPPRYFTVSYTINPWMDPNQPVNTARAMAQWTALVDTHRELGH
                     TVELIDPEPGLPDMVFAANAATVLDGAVLGVRFRNAERAAEAEHYRRWFIAHGAPEMA
                     MPSAVNEGAGDLMWTGSLLLAGTGFRTEPAAHREAQEALGVPVVSLQLSDPHYYHLDT
                     CLLVLDDSPSDPLIAYYPPAFSSGSRRVLARLFPDAVLASAADAACLGLNGVSDGCAV
                     VLPLEAVGLGRALAVRGFEPIFVDISELRRAGGGPKCCTLELRS"
     gene            1360..2226
                     /gene="htpX"
                     /locus_tag="VF788_09950"
     CDS             1360..2226
                     /gene="htpX"
                     /locus_tag="VF788_09950"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007025153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HEX8934496.1"
                     /translation="MHNHLNGLKTALLLGGMSALVVLIGAFFGRTGVLIALVFALGMN
                     AYAYFNSDKLALRAMHAQPVSEPEQPMMYRIVRELATDARQPMPRLYISPTEAPNAFA
                     TGRNPRHAAVCCTVGILKLLNERELRGVLGHELSHVYNRDILISSVAGALAGMVTALS
                     NLALFAGLFGGGDDDRPNPIAMLLIALLGPIAAGIVQMAVSRSREYQADASGASLTGD
                     PLALASALRKLEHGTQVAPLRPEPALASQSHLMIANPFRPGEGAARWFSTHPPIAERV
                     QRLEEMARRQLS"
     gene            complement(2235..3107)
                     /gene="rfbA"
                     /locus_tag="VF788_09955"
     CDS             complement(2235..3107)
                     /gene="rfbA"
                     /locus_tag="VF788_09955"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEX8934497.1"
                     /translation="MKGIVLAGGAGTRLHPITQAVCKQLLPVYDKPMVYYPLSVLMLA
                     GIREILIISTPLDLPLFRRLLGDGSALGLRLSYAEQAQPNGLAEAFLIGADFIADDPV
                     ALVLGDNIFYGPGFSGRLRHCVANLDGCVLFGYPVKDPQRYGVGELDDAGKLISIEEK
                     PAVPRSNKAITGLYLYDNEVVKVARSLTPSARGELEITDVNMHYVRQGRAILIDLGRG
                     FAWLDTGTHESLLEAGQYVQVLEHRQGVRIACLEEIALRMGFIDAAACYALGQSLVKS
                     GYGQYVMDIAHSTQ"
     gene            complement(3104..3595)
                     /locus_tag="VF788_09960"
     CDS             complement(3104..3595)
                     /locus_tag="VF788_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEX8934498.1"
                     /translation="MADPSFDVVSKVDRQEVDNALNQAVKELSTRFDFRGTGAKVTWA
                     GEDAMTIEAQTEERCRAAIDVVKSKLIKRGISLKAFEVDEPALSGKIYRATGRILQGI
                     NQDKAKEIAKAVRDEKLKGVQAQIQGDQLRVSGKKKDDLQTVIALLKGRDFGVALQFT
                     NYR"
     gene            3704..3786
                     /locus_tag="VF788_09965"
     tRNA            3704..3786
                     /locus_tag="VF788_09965"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3738..3740,aa:Tyr,seq:gta)
     gene            complement(4001..>4352)
                     /locus_tag="VF788_09970"
     CDS             complement(4001..>4352)
                     /locus_tag="VF788_09970"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8934499.1"
                     /translation="TAILLATSNTAVLGFVAVGPDQDSTAGSEAGQLYAIYLRSRQRG
                     RGIGTQLHNAAMDRLSTLGFRHATLWILEGNERAIHFYHRNGWIADGVRRIDQGPQGV
                     DLPELRLRRTLAAV"
BASE COUNT          728 a         1485 c         1351 g          788 t
ORIGIN      
        1 cacgatcgcg tccgccgcac cggagaccgt gtaggccgca accacctcgg gcagggcggc
       61 caggccctcc cggatccggg agggcgccac gttgccccgg cagtgcactt ccacgaaggc
      121 ctcggtgccc cagcccagcg cgccaggatc gacgaccgcg gtgaagccgc ggagcacccc
      181 ggtctcgagc agcttgtcca ccctgcgctt cacagcgggc gcggagagcc ccacgacacc
      241 gccgatctcc gcgtagctgg aacgggcgtc agtgaccagc cgcgccacga tctgccggtc
      301 gatcgagtcc atacgcaaca ttttgctggt caaccagcaa cgaaaccaca ttgatagctg
      361 agcttcgggc ttcctaccat cgaagtatgt cgtcagctct gaggttagcg aggccgtcgc
      421 gggtcggtgt cacacgccgg tacctgatgt gccccccgcg gtacttcacc gtgagctaca
      481 cgatcaatcc ctggatggat cccaaccagc ctgtgaatac cgcgcgggcg atggcccagt
      541 ggacagcgct ggtcgatact catcgcgagc ttggacacac ggtggagctg atcgatcccg
      601 agccgggact gccggacatg gtcttcgcgg ccaacgccgc caccgtgctc gatggcgcgg
      661 tgctgggtgt ccggttccgc aacgcggagc gggccgccga ggcggagcac taccggcgct
      721 ggttcatcgc gcacggcgca cctgagatgg cgatgcccag cgcggtcaac gagggtgccg
      781 gtgacctgat gtggaccggc tcactgctgt tggccggtac cgggttccgt actgagccgg
      841 cggcgcaccg cgaggcgcag gaggcacttg gggtgccggt ggtctcgctg cagctgagcg
      901 atccccatta ctaccacctc gatacctgcc tgctggtgct cgacgattcg ccctccgacc
      961 cgctgatcgc ctactaccca cccgctttct cgtccggctc gcggcgagtc ctggcccggc
     1021 tgttcccgga tgcagtgctc gcaagcgcag ccgatgcggc gtgcctaggg ctcaacggcg
     1081 tatccgacgg ctgcgcggta gtcctgccac tagaggcggt cggcctcggc cgcgctctgg
     1141 ccgtccgcgg cttcgaaccg atcttcgtcg acatctccga actccgccga gccggcggcg
     1201 gccccaaatg ctgcaccctg gaactgcgct cctgactccc acccctcggc gtgtcgcgct
     1261 agcgtgctcg gtgtgtcgcg cgcggcgtgc cgtggaaccc tgcgcccggc cagcacgttg
     1321 cactgatcag aacccgaata caacgggagg ctgaccacgg tgcacaacca tctcaatggg
     1381 ctaaaaactg cgctgctgct cggcgggatg tccgcgttgg tggtgttgat cggcgcgttc
     1441 ttcggccgca ccggggtact catcgcgctg gtcttcgcgc tgggaatgaa tgcctatgcc
     1501 tacttcaatt ccgacaaact ggcgttgcgg gcaatgcacg cgcagccagt gtccgagccc
     1561 gaacagccca tgatgtatcg gatcgtccgc gagctggcca ccgatgcgcg ccaacccatg
     1621 ccccgcctct acatcagccc gacagaagcc cctaacgcct tcgccaccgg ccgcaatccg
     1681 cgtcatgccg cggtgtgctg caccgtcggt attctcaaac tcctcaatga acgcgaacta
     1741 cgtggcgtac tcgggcatga gctctcgcac gtctacaacc gcgacatcct catctcctcc
     1801 gttgccggcg cgctagccgg catggtgaca gcactatcga acctggccct gttcgccggc
     1861 ctgttcggcg ggggtgacga cgaccgcccg aacccgatcg cgatgctgct catcgccttg
     1921 ctcggcccga tcgcggccgg catcgtgcag atggcggtga gccgatcgcg ggagtatcag
     1981 gctgatgctt cgggcgcaag cctcaccgga gacccgctgg cgttggccag cgccctgcgc
     2041 aagctggagc acggtaccca ggttgcgccg cttcgtccgg agccggcgct ggcctcgcag
     2101 tcacacctca tgatcgccaa cccgttccgg ccgggcgagg gtgcagcgcg gtggttctcc
     2161 acccacccgc cgatcgccga gcgggtgcaa cgcctggaag agatggctcg acgccagctg
     2221 tcttgacgga tccgtcactg ggttgaatgg gcgatgtcca tgacgtactg gccgtagccg
     2281 gacttcacca gtgactgccc cagcgcgtaa caggcggccg cgtcgatgaa gcccatccgc
     2341 agcgcgatct cttccaggca ggcaatccgc actccctgcc ggtgttcgag cacctgcacg
     2401 tactggccgg cctccaacag cgactcatgg gttccggtgt cgagccaggc gaacccgcga
     2461 cccaggtcga tcagtattgc ccggccctga cgcacatagt gcatgttgac gtcggtgatc
     2521 tctagctcgc cacgggctga gggggtcagt gagcgggcga ccttcaccac ctcgttgtcg
     2581 tagaggtaca gaccggtgat cgccttgttc gagcggggca ctgccggttt ctcctcgata
     2641 gaaatcaatt tgccggcatc gtcgagttcg cccacgccgt aacgttgcgg gtccttaacc
     2701 ggatagccga acaacacgca accatcgagg ttggccacac agtgccgcag ccgcccggag
     2761 aaaccgggac cgtagaagat gttgtcgccc agcaccaacg cgaccgggtc atcggcgatg
     2821 aagtccgcac cgatcaggaa ggcctcggcc aagccgttgg gctgtgcctg ctcggcatag
     2881 ctcagccgca gccccagtgc gctaccgtca ccgagcaggc gccggaacaa cggcagatcc
     2941 aatggtgtgg agataatgag aatctcccgg atcccggcca gcatgagtac cgacagcggg
     3001 tagtacacca tcggcttgtc gtacaccggt agcagctgct tgcagacggc ctgggtgatc
     3061 ggatgcagcc gggttccagc gccgccggcc aggacgatcc ccttcaccga taattggtga
     3121 actgcaaggc gaccccgaaa tcgcggccct tcaacagggc aatgacggtc tgcaggtcgt
     3181 ctttcttctt accggatacc cgcagctgat cgccctggat ctgggcctgc acgcccttga
     3241 gcttctcatc gcggaccgcc ttagcgatct ccttggcctt atcctggttg ataccctgca
     3301 ggatacgccc ggtggcgcgg tagatcttgc ccgagagggc cggttcatcc acttcgaagg
     3361 ccttcagcga gatgccccgc ttgatcagct tgcttttgac cacgtcgatg gcggcgcggc
     3421 agcgttcctc ggtctgcgcc tcaatcgtca tcgcgtcctc accggcccag gtcaccttcg
     3481 cgccggtgcc acggaagtcg aaccgggtcg acagctcctt gaccgcttgg ttgagcgcgt
     3541 tgtccacttc ctgccggtcg accttgctga ctacatcgaa cgacggatcc gccaccatgt
     3601 cctccttcca cttcagccgg tgacgacctt acccgccggg ccgggtcgtc cctgatgtca
     3661 cgggctgtgt atcgtgacta ccggtcggcg catccggcca ccaggcgggt tgcccgagcg
     3721 gccaatggga gcggactgta aatccgtcgg ctgatgcctt ccaaggttcg aatccttgac
     3781 ccgccacgca gcaggaacgc ccctgaccag catagggacc ggtcgtgggc cgatcgtcgt
     3841 gctgtccggc gctgtccgga cgtgtccggc ggttcacggc tagttgcgcc ctatacgcgc
     3901 cctagcgccc ggccctgcgt cggaggtcat gtgctttgct gctatctggc gatgctggga
     3961 ctgagcccgc atctttccac cggccggagc caggcaaggg tcagaccgca gcaagcgtgc
     4021 ggcgcagacg cagctcaggg agatcgacac cttgtggccc ctggtcgatt cgccgtacac
     4081 cgtcggctat ccacccgttg cgatggtaga aatggatggc tcgctcgttg ccctccagga
     4141 tccacagggt ggcgtgccta aaaccaaggg tgctcagccg gtccatggca gcattgtgca
     4201 gttgcgtccc gattccgcgt ccccgctgac gagaccgcag gtagatcgcg tacagctgtc
     4261 ccgcttctga gccagccgta gagtcttgat cgggtcctac ggcgacgaag ccgaggacgg
     4321 cggtgttgga tgttgccagc agaatcgctg tc
//
LOCUS       DASVXZ010000482         8647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_320620, whole genome shotgun sequence.
ACCESSION   DASVXZ010000482 DASVXZ010000000
VERSION     DASVXZ010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8647
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320620"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VF788_09975"
     CDS             complement(<1..544)
                     /locus_tag="VF788_09975"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8934500.1"
                     /translation="MIIEAGQVAVVTGAAQGLGHALAAGFIDRGVSVVLADTATERLH
                     STAEAFTTLGARVLPVITDVSDATAVTALASRALEHFGRVDMVVNNAGITTGNARPLW
                     QTDPQDWQRVLAVNVFGVVYGIQAFVPHLVAAGAGHVVNISSLSGLAATPFAGIYCAS
                     KFAVVAISETLRLELEVMRLP"
     gene            complement(574..1890)
                     /locus_tag="VF788_09980"
     CDS             complement(574..1890)
                     /locus_tag="VF788_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEX8934501.1"
                     /translation="MNSWFANSLVMLLFILIGGYFSASEIALVSLREGQVLRLAEEGK
                     RGRAVARLREDPSRFLSAVQVGVTFAGFFAASYGGATLAVELQRVLVGWGLSEDLAGT
                     AALILVTLVVSYVSLVLGELVPKRLALQRPEVIALAVGPVLDWIAKVLRPVIWFLSVS
                     TNAVVRLLGLNPHLKADEVSEEELRHMVSSHEELTPEERRVLTDVFAATDRVLREVMV
                     PRTEIDFLSRSAGVEEAAAYVENRPHSRYPVTGDSLDDVLGIVHVRDLLTAAHHRDHG
                     EGGPETVGELARETPALPGSLPLVQALSQMRRHGHMAIVIDEYGGTDGIVTLEDLIEE
                     LVGDIEDEYDARGRPSGRREDGSVELDGLLHRDDIKELTGIDLPEGHFNTLAGFIIGQ
                     LGRIPEVGEGVEALDHRFTVTEMDGRRAARIRITPIDAQVDAGEGR"
     gene            complement(2139..2864)
                     /locus_tag="VF788_09985"
     CDS             complement(2139..2864)
                     /locus_tag="VF788_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005149935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 domain-containing protein"
                     /protein_id="HEX8934502.1"
                     /translation="MKTPPIVSPHEWEAARQQLLVKEKELTRAGDALAAERRRMPWLA
                     VEQEYEFDGPEGKASLLDLFEGRRQLIVYRAFFEPGVFGWPDHACRGCSLVADQVAHV
                     AHLNARDTTLVFVSHAPQPDIERVKARMGWTMPWYTMTDEFDTDFGVDEWHGTNAFIR
                     DGDSVFRTYFINNRGDEAMGSTWSYLDLTALGRQEEWEDSPEDYPQTPPYEWWNWHDE
                     YGDAKPSQGWSSQIERGLEQPSP"
     gene            complement(2936..3265)
                     /locus_tag="VF788_09990"
     CDS             complement(2936..3265)
                     /locus_tag="VF788_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020674045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX8934503.1"
                     /translation="MPPDIEAIAEQVFIALADPSRRAILATLASGGPATATDLAGRLP
                     ITRQATAKHLALLAEAGLVTAEPGERRRVRYRLHSTPMQVAQQFLAALARDWDGPLDA
                     LKDHLSR"
     gene            complement(3255..3686)
                     /locus_tag="VF788_09995"
     CDS             complement(3255..3686)
                     /locus_tag="VF788_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016334048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX8934504.1"
                     /translation="MGFPDHIERVVEIAHPPAKVWAALTTAEGLSSWFGNQATIDLRP
                     GGSAQMTWTGGHTVDMRVERVEEPTAFGFTWQIYGLPDDDPRRTYVEFTLEPVSAGTR
                     LTVVETGFAQLPEDAYRKEYDSHTEGWARELGELVDYLDAA"
     gene            3968..4144
                     /locus_tag="VF788_10000"
     CDS             3968..4144
                     /locus_tag="VF788_10000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934505.1"
                     /translation="MTGPGSVFLTTRWLPLEEAVSWVLDHRITNSLAVGGILAAAHQL
                     RTGARLPQPVEAAR"
     gene            4200..4460
                     /locus_tag="VF788_10005"
     CDS             4200..4460
                     /locus_tag="VF788_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2905 domain-containing protein"
                     /protein_id="HEX8934506.1"
                     /translation="MASTGRPEHYDEMVKELGPWLIGGGIVLVIAGFLAWTGTLSWFG
                     NLPGDLRITTGNVRIYIPFTSMLLISVVLNVFLWLFVWLFNR"
     gene            complement(4603..4815)
                     /locus_tag="VF788_10010"
     CDS             complement(4603..4815)
                     /locus_tag="VF788_10010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934507.1"
                     /translation="MDGTKAVRGVDQHRMVVTEGQTLWSTFFPTASRNPTQFHRHEGR
                     QVCHLPRADAHGGDLQHRLRGARGAW"
     gene            complement(4923..5492)
                     /locus_tag="VF788_10015"
     CDS             complement(4923..5492)
                     /locus_tag="VF788_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8934508.1"
                     /translation="MLIENEFEVAAPLEQVWKHMQDVPRIAPCLPGAELIDVNGDVYK
                     GRVTTKMGPVKLQFMGTAKIVERDESAKRIVMDAAGSEEKGKGQATMKVTSTMARSGS
                     GTRVKVAQDLQLSGAAAQFGRGMVQDVTSVIMKSFAKCIADDIGRASRGEAAVQGDAV
                     PVKGFSIAMQAAMTAMKRFFGRLFGRVDA"
     gene            5743..6057
                     /locus_tag="VF788_10020"
     CDS             5743..6057
                     /locus_tag="VF788_10020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934509.1"
                     /translation="MSETENQRHDLLDEVLHFGAGFKDGEQPWVLEALSALGPHVARW
                     DPDDVDVEISVKDRNLDRVLAEAKRELIRQIEDHKAMREPKHNRQLRKKTTRSAARRT
                     AG"
     gene            6192..6812
                     /locus_tag="VF788_10025"
                     /pseudo
     CDS             6192..6812
                     /locus_tag="VF788_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020632318.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
     gene            6946..8466
                     /locus_tag="VF788_10030"
     CDS             6946..8466
                     /locus_tag="VF788_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020497224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CehA/McbA family metallohydrolase"
                     /protein_id="HEX8934510.1"
                     /translation="MCDQPRRDRLSRRSLLAASGALAAAGTLLPGVAFAEQPDIEPSG
                     EQTHTVTGTLRPDVPDWYYLPVDVPPGVREIEVGYSYDRPQVPPSGRGNALDIGIFSP
                     AGVQLGNQHGFRGWSGGFRDRFTISAAAATPGYLPGPIEPGRWHLILGPYTVAPQGLT
                     YTVSVTLRFGRPDPAFAPNPAPATAPDRDRGRAWYRGDGHLHTVHSDGRRTPAELAAA
                     ARAAGLDFIVSTEHNTPSASLQWGEHAGADLLIVNGEEVTTRSGHWPAWNLPVGKWID
                     WRYRAADRLALRRFVDEVHRAGGLVVAAHPFASCLGCSWEYGYEQADLVEVWNGPWTL
                     DDEAAVASWHGMLRAGAWVPAVGNSDAHNPDHVVGLPHNVVLAEGLTPRRLMDGFKAG
                     RNWIAESAQVQVTFGATDGVRRAGMGETLTTGTGTPVTIELTVSGAPGTSVRLLDQSG
                     PQWIQPVDATGSATVRWTTQTRYSRWVRAEMRRPVATATTPNSMVALTNPVFLSSR"
BASE COUNT         1491 a         2945 c         2743 g         1468 t
ORIGIN      
        1 tcggcagcct catcacctcc agctcaaggc gcaacgtctc cgaaatcgcg actaccgcaa
       61 acttgctggc acagtagata cccgcaaacg gcgtcgccgc cagccccgac agcgaagaga
      121 tattgaccac gtgtccggcg ccagccgcga cgagatgcgg cacgaacgcc tggatgccat
      181 acaccacgcc aaacacattg accgccagga cgcgttgcca gtcctgcggg tcggtctgcc
      241 acagcggtct ggcgttgccg gtggtgatac cggcgttgtt gacgaccatg tccacccggc
      301 cgaagtgctc aagagcgcgg gaggccagcg cggtgacagc cgtcgcgtcg ctgacgtcag
      361 tgatcactgg tagcactcgg gcgcctagag tggtgaatgc ctcggccgtg ctgtgcaggc
      421 gctctgtcgc ggtgtccgcc agcacgacgg acacgccgcg gtcgatgaac ccagcggcca
      481 gggcgtgacc cagtccctgc gccgccccgg tcactaccgc gacctgaccc gcttcaatga
      541 tcacgtgact tccctttctt gtttgcaatc gagtcagcga ccttcacccg cgtcgacctg
      601 ggcgtcaatc ggtgtgatgc gaatgcgggc agcccgccgc ccgtccatct cagtcacagt
      661 gaagcgatga tcaagcgcct ccacgccttc cccaacctcc gggatccggc caagctggcc
      721 gatgatgaaa ccggcgagag tgttgaagtg gccttctggc aggtcgatgc cggtgagttc
      781 cttgatgtcg tcacggtgca gtagcccgtc cagctccacg ctgccgtcct cgcgccggcc
      841 gctgggccga cctcgagcgt cgtactcgtc ctcgatatca cccaccagtt cctcgatgag
      901 gtcttcgagg gtcacaatcc cgtcggtgcc cccgtactcg tcgatgacga tcgccatgtg
      961 gccgtgtctg cgcatctggg acagtgcctg aaccagcgga agactcccgg gtaacgcagg
     1021 ggtctcccgg gcaagctcgc cgacggtttc cggcccgccc tcgccatgat cgcggtgatg
     1081 cgcggcggtt aacaggtctc ggacgtggac gatgccgaga acgtcgtcga gtgagtcccc
     1141 ggtgaccgga tagcgggagt gcggccggtt ctcgacatac gcggctgcct cctcgacccc
     1201 ggccgatctg gacaggaaat cgatttcggt ccggggcacc atcacctcac ggagcacccg
     1261 atcagtcgcc gcgaacacgt ccgtcagcac ccgccgctct tccggcgtca gctcctcatg
     1321 gctgctgacc atgtgccgca actcctcctc actgacctcg tcggccttga gatgcgggtt
     1381 gagaccgagc aaacggacca cagcgttggt ggacaccgag aggaaccaga tcaccggacg
     1441 gaggaccttc gcgatccagt cgagtacggg gcccacggcc aaggcgatca cctcaggccg
     1501 ttgcaacgcc agccgcttag gcacgagctc accaagcaca agggagacat acgacacgac
     1561 caacgtgacc aggatcagcg ccgctgtccc ggcaagatcc tccgatagcc cccagccgac
     1621 cagaacccgc tgcagctcga cggccagagt cgcaccgccg tagctggcgg cgaagaaccc
     1681 ggcgaatgtc acgccgacct gcactgcgga caggaaccgg ctcgggtcct cccgcaggcg
     1741 cgccaccgcc cgcccacgct tgccttcctc ggcgagccgg agtacctgtc cctctcgcag
     1801 cgagaccaaa gcgatctcgg acgccgagaa gtagccgcca atcaggatga acagcagcat
     1861 cacgagagaa ttggcaaacc aactgttcat atcgccatcg tcgacctcaa gggcgttgac
     1921 gggaccgacc ggggcaccga tgagctcgcg cgcgctcttg aggcacggta ggtgcccttg
     1981 cagatgatct ccacaaacct aaggtcggtg atctacgtcc gttcgtggtg caatccggtt
     2041 cgacgattcg cgccgccggc tccgacacct cttcgaccgc aatatccacc acagtcggat
     2101 gccatactat atgccggagc accaccgggt actgtgcatc atggggacgg ctgctccagg
     2161 ccgcgctcga tctggctgct ccacccctgg gacggcttgg cgtcgccgta ttcgtcatgc
     2221 cagttccacc actcgtacgg tggggtttgg gggtagtcct cgggtgagtc ctcccactcc
     2281 tcctggcgtc cgagcgcggt caggtcgagg tagctccagg tgctccccat cgcctcgtcg
     2341 ccgcggttgt tgatgaagta ggtgcgaaac acgctgtcac catcgcgaat gaacgcgttc
     2401 gtgccgtgcc actcgtccac accgaagtcg gtgtcgaatt cgtcggtcat ggtgtaccag
     2461 ggcatcgtcc aacccatccg cgccttcacc cgctcgatgt ccggctgcgg cgcgtgcgag
     2521 acgaagacga gggtggtatc gcgggcgttc agatgcgcga cgtgggcgac ctgatcggcc
     2581 accagggaac agccgcggca agcatggtca ggccagccga acaccccggg ctcgaagaaa
     2641 gcgcggtaga cgatcagctg ccgacgaccc tcgaacaggt caagcagact cgccttaccc
     2701 tcaggtccgt cgaactcata ctcttgctcc acggccagcc acggcatccg ccgacgctcc
     2761 gcagccaacg catcaccggc ccgggtcagc tccttctctt tcacaagcag ttgctggcgc
     2821 gcagcctccc actcgtgcgg cgagacgatc gggggtgtct tcatcgtaat gtcactcatg
     2881 atctcctcga gtttcgtggt gagattctgt ggatgccgtg agctgatggc cgggctcacc
     2941 gactgaggtg gtccttcaac gcgtcgagcg ggccgtccca gtcgcgggcc aacgcggcca
     3001 ggaactgttg tgccacctgc atcggggtgg agtggagccg gtaccgcacc cggcgccgct
     3061 cccccggttc ggccgtcacc aggccggcct cggccagcag ggccagatgt ttggcggtcg
     3121 cctgccgcgt gatcggcagg cgaccggcca ggtccgtggc cgtagcggga ccgcccgacg
     3181 ccaatgtggc caggatggcg cgccggctcg ggtcggccag ggcgatgaag acctgttcgg
     3241 cgatcgcctc aatgtcaggc ggcatcgagg tagtcgacca gttcgcccag ctccctcgcc
     3301 caaccctcag tgtggctgtc gtactccttg cggtaggcgt cttccggcaa ctgagcgaag
     3361 ccggtttcaa ccacggtcag ccgcgtgccc gcactgaccg gctcgagcgt gaactcgaca
     3421 taggtgcggc gcggatcgtc atcgggtagg ccgtagatct gccaggtgaa gccgaacgcc
     3481 gtcggctcct cgacccgttc gacccgcatg tcgacggtgt ggccgccggt ccacgtcatc
     3541 tgggccgatc cgcccgggcg caggtcgatc gtcgcctggt tgccgaacca gctgctcaga
     3601 ccctccgccg tggtgagcgc agcccacacc ttcgccggcg ggtgggcgat ctcgacgacc
     3661 cgctcgatgt gatcgggaaa tcccatgaca cctccaacat gtagcaactg gtcggttgct
     3721 acactatggc aaccgaccga ttgcgtcaat atgcagccgc atcgaggatg ctcgacgcat
     3781 ggtcgtgacc tctcccaccg cgcccgcgct gcccccgtga gcccgcttca gaaaatgcag
     3841 ttacgacgcg taattcgatg gcgtctggga ttggtggtga gcgaacaagg aaaacaggcg
     3901 attacggacg ccgcttagct cggcaggccg gtcgcctacc tcgctctcaa ggacggcacc
     3961 ccggtttatg accggacctg gcagcgtatt cctcacgaca cgctggctgc cgttggagga
     4021 ggcggtgagc tgggtgctcg accaccgcat caccaactcc ctggccgttg gcggcatcct
     4081 cgccgctgct caccagctcc ggaccggcgc ccgcctaccg cagccggttg aggccgcccg
     4141 ctgaccgaac gaccgctcac gccgccctca acggcggtcc gccgaccact cgccagagca
     4201 tggcgagcac gggccgcccc gagcactatg acgaaatggt caaagagctg ggcccctggt
     4261 tgatcggcgg tgggatcgtg ctcgtcattg cgggattcct cgcctggacc gggacactgt
     4321 cctggttcgg gaacctcccc ggtgacctcc ggattaccac cgggaacgtc agaatctaca
     4381 tccccttcac gtcgatgctg cttatctcgg tggtcctcaa cgtcttcctg tggttgttcg
     4441 tctggctgtt caaccgctga ctgcctcgaa tacacgtccg gctgcccctt ccgtactgcc
     4501 gggttaagcc gggccgatgt cccggacgcg gacgcgaagc aggtcgcctg cgtgacgctg
     4561 cgcaccctgt ctcaacgtat tcggtgggcg aggccaagga cattaccaag cgccacgcgc
     4621 gccacggagg cggtgctgga ggtccccgcc atgcgcatca gcgcggggca ggtggcagac
     4681 ctggcgccct tcgtgccggt ggaactgcgt cgggttgcgg gatgcggtgg ggaagaaggt
     4741 ggaccacaac gtctggccct cggtgacgac catccggtgc tggtcgacgc ctcgcacggc
     4801 cttggtcccg tccacgacgc gaccgcgggc aggcgggtct ttcgaatagc catacctggc
     4861 cgatcggatc accaggggtt actgacccac gttgctcgtt tcttcaagtt cacggatgat
     4921 tatcacgcat ccacccgacc gaaaagccgg ccgaagaacc gtttcatcgc agtcatggcc
     4981 gcttgcatgg cgatgctgaa gcccttcacc ggaacagcgt cgccttgtac ggctgcctcg
     5041 ccacgggagg cccgcccaat atcatccgcg atgcacttgg cgaaactctt catgatcacg
     5101 ctcgtgacgt cctgaaccat gcccctgccg aactgggcag cagcgccgga aagctggaga
     5161 tcctgagcca ctttcacgcg cgtgccactt cctgaacgcg ccatcgtcga cgtcaccttc
     5221 atggtggcct ggcccttgcc cttttcctcc gaaccggccg catccatcac gatccgctta
     5281 gcggactcat ctcgctcgac gatcttggcc gtccccatga attggagctt caccggcccc
     5341 atcttggtcg tcactcgccc cttgtacaca tcaccgttga catcgatgag ctcggcgccc
     5401 ggcaggcaag gtgcaattcg cggcacgtct tgcatgtgct tccacacctg ctcaagcggt
     5461 gcagcaacct cgaactcgtt ctcgatcagc atcgactact cactcccttg tatacgtcgg
     5521 ggtccaggcg tattgctccg gcgggtggct ctccgcgaaa cccctaggga atccacgagc
     5581 actgcccgcc aaccgaatcg cctgacccat tagtgaaggg tttcaaccat cggtgatcgt
     5641 taaaccacga caaggcgagt tttggctgtg cgccgagcct gccggccgcc gaccgtcgga
     5701 gggtctaccg tcgaattgag actctggaga gacgaaactg cggtgagcga gacggagaac
     5761 cagcgtcacg atctcctcga cgaggtgctg cacttcggcg ccgggttcaa ggacggggag
     5821 cagccctggg tgctggaggc gctgtcggcg ctcgggccgc acgtggcacg ctgggatccc
     5881 gatgacgtcg acgtagagat ctcagtgaag gaccggaacc tggatcgagt gctcgccgag
     5941 gcgaagcgcg agctgatccg gcagatcgag gatcacaagg cgatgcggga acccaagcac
     6001 aatcgacagc tgaggaagaa gaccaccagg agtgctgccc gtcgtaccgc ggggtgaagc
     6061 aagcccgcgg gttgacgctg ccagaccgaa gacgatgtgc tggggcggtt ggatcctgtc
     6121 tgcaggctca cctcactacc cccaaaggtc gcgggtatgc caccgtccgt gctgtccggt
     6181 tctgatcgtg ccactttggc cattcctgcg tgctgctcga caccggctcg gcgcggttgt
     6241 tgatcgaccc gggcacctgg tctgcagggt tcgaggacct gacccggttg gatgccgttt
     6301 tgatcactca ccagcaccct gaccacctcg acagtgagcg gttgcccgcg ttactgcggg
     6361 gaaatccgga agctcggctg atcgttgatt ccggcagcgc cgcggagctc agcggccatg
     6421 accacgaggt cgccacgccc ggcgagacat tcgaggtggc cggggcacgc gtcgaggtgc
     6481 tgggtggaga ccacgcggtg atttacccgg atgttccggt gatcccgaac aatgcatacc
     6541 tggtcgatgg cacgcacctg caccccggcg actcgttcac ttcaccgtcg agccaggtgg
     6601 aggtgctgtt cgtgcccacc tcggcgccgt ggctcagaat cgccgaggtg attgactacc
     6661 tgcgcgcggt ggtgccgagc accgcggtgc cgatccacca ggcggtgctt tccgcgccgg
     6721 gccgacagct ccattaccgg ctaatcgaaa acctgggtcc gaaagaaacg acggtgcggg
     6781 tactagacgc cggcaaagcc accacgctct agcctttctc agggcgctga tgcattaagc
     6841 gatcgagttc tgaggatctg cacgccatcg caaacgtatt cgaggatctc ctcggcgggc
     6901 aacaacctcc gacgatctaa cagtcacacc cactacgttg accgcatgtg tgaccagccc
     6961 cgccgggacc ggctcagccg ccggtcgctg ttggccgcgt cgggtgcgct ggccgccgcc
     7021 gggacgttgc taccgggggt cgccttcgcc gagcagccgg acatcgagcc gtccggtgag
     7081 cagacccata ccgtcaccgg gaccctgcgg cccgacgtac ccgactggta ctacctgccg
     7141 gtggacgtgc ctcccggggt ccgcgagatc gaggtcgggt acagctacga ccgcccgcaa
     7201 gtgccgccaa gcggcagggg gaacgcactg gacattggca tcttctcacc ggccggggtg
     7261 cagctcggca accagcacgg cttccgcggc tggtcgggtg gcttccggga ccggttcacg
     7321 atcagcgccg cggcggccac gcccggatac ctgccgggac cgatcgagcc cggtcgctgg
     7381 cacctgatcc tcgggccgta caccgtcgcc ccgcagggtc tcacctacac ggtcagcgtc
     7441 acgctgcggt tcggccgccc cgacccggcc ttcgcaccca acccggcccc ggccaccgcg
     7501 ccggaccgtg accgcggtcg agcctggtac cgcggggacg ggcacctgca caccgtacat
     7561 tccgacggcc ggcgcacccc ggccgagctg gccgcggccg ctcgtgccgc cgggctcgac
     7621 ttcatcgtgt cgactgagca caacacaccg agcgcgtcgc tgcagtgggg cgagcatgcc
     7681 ggagccgacc tgctgatcgt caacggtgag gaggtcacca cccgctccgg gcactggccg
     7741 gcgtggaacc ttccggtggg caagtggatc gactggcgct accgggcggc cgaccgcctg
     7801 gcgctgcgcc ggttcgtcga cgaggtgcat cgggccggtg gactggtggt cgctgcgcat
     7861 ccgttcgcgt cgtgcttggg ctgctcatgg gagtacggct acgagcaggc cgatctggtc
     7921 gaggtgtgga acggaccgtg gacgctggac gacgaggccg cagtggcgag ctggcacggg
     7981 atgctgcgcg ccggtgcctg ggtaccggcc gtcggcaaca gtgacgcgca caatcccgac
     8041 cacgtggtcg gcctgccgca caatgtggtg ctcgccgagg ggctcacccc ccgcaggctg
     8101 atggacgggt tcaaggccgg gcgaaactgg atcgcggagt ccgcgcaggt gcaggtgacg
     8161 ttcggggcga cggacggggt gcgccgggcc ggcatgggcg aaacgctgac cacgggtacc
     8221 ggcacaccgg tcaccatcga actgaccgtc tcgggcgcgc cgggaacctc ggtgcggcta
     8281 ctcgaccaga gcggtccaca gtggattcag ccggtggacg cgacaggctc ggcgacggtc
     8341 aggtggacca cgcagacccg ctactcccgc tgggtgcgcg ccgaaatgcg ccggccggtc
     8401 gcgaccgcca ccaccccgaa ctcgatggtc gcactcacca acccggtgtt cctctcctcg
     8461 cgctgagggc gcacggtggc ccctgcggaa ccacgccagc gccgcgagaa tcagggcggc
     8521 gaccgtgcca ggggcaacgt gggcgtgcgg ccgttcggat gctgccgaca ccgttgcatt
     8581 tcctccagga aagcgtcggg tgcccaggga gaggacaccg ggataccggt gccgggctcc
     8641 ggatgcc
//
LOCUS       DASVXZ010000483         4050 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_922435, whole genome shotgun sequence.
ACCESSION   DASVXZ010000483 DASVXZ010000000
VERSION     DASVXZ010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4050
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_922435"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VF788_10035"
     CDS             <1..201
                     /locus_tag="VF788_10035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934511.1"
                     /translation="HGRYARNDLFGVGTAGRDIAEVLATVNPPVQKRLHYDSAELLTG
                     RNGVNTVPNDSGYHEPARNSMR"
     gene            complement(168..1049)
                     /locus_tag="VF788_10040"
     CDS             complement(168..1049)
                     /locus_tag="VF788_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8934512.1"
                     /translation="MFDGFDEFDIATAGTTIHGRRGGEGPPILLLHGIPQTHLMWHRV
                     APCLAERFTVVVTDLRGFGDSGKPSSTPDHAPYSMRALAGDQVEVMNTLGYDRFGVVG
                     HDRGARCSYRMALDHPGVVTRLAVLDIIPTGEAFRRADMAFSLGFWVWSFLAAPAPVP
                     EQLIGKAPAVLVDHMLDSWSDVPGAFPAQIRAQYIDKFSAPESIHAICEQYRAAATLD
                     YQHDEADRGQRRITCPVLVLWSDTGALASGYQPLEIWRTWSDEVRGGPISAGHFIPEE
                     APGQTTRHLIEFLAGSW"
     gene            1149..1649
                     /locus_tag="VF788_10045"
     CDS             1149..1649
                     /locus_tag="VF788_10045"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8934513.1"
                     /translation="MARDPGIVGLDRIGRAVALRGHGFAMRVIAHEPYPVMEFVEDHR
                     IELMRIDEVFAQSDFVTLHLPAMPETERIVNAAKLALMKPTAFLINADRGNLVDEDAL
                     HAAVRSGQIAGGGIDAWTTEPMTDQRWAELDNVVLTPHSAAEIVVKVMRGEQPAQVLN
                     PEVWDR"
     gene            complement(1655..3004)
                     /locus_tag="VF788_10050"
     CDS             complement(1655..3004)
                     /locus_tag="VF788_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX8934514.1"
                     /translation="MTIDRCTASIRVVATGDNKLGVSVYGISDNSPRRVVVVGQGYVG
                     LPVAIRAVEAGFDVVGFDIDKTRVDCLRKAQTYVDDITDSDLAGAMSTGRYLPTDDPA
                     ALAGFDVAVVCVPTPLRDGAPDLSYVEDAAATIAPRIRPGCCVVLESTSYPGTTEEIF
                     IPILEAGSNLRAGKQFSAGYSPERIDPGNETWRFHNTPKIISGVNEASLHALQDFYGR
                     LVERTVPVSAPREAELAKLLENTFRHVNIALVNELATYCHGLGLDVWSVIDAAATKPF
                     GFMKFTPGPGVGGHCLPIDPSYLSWQARRSLGRAFRFVDIANDVNDHMPDHVVSRVVA
                     QLNQQRKSVKGSRILLVGLAYKRNSRDTRKSPAIAVAKRLDDLGADLRAIDPLVSEDA
                     IPCFIQMVPCEPRQITDTDLVVVLADHDAIAWELFEQHAHRVLDTRNRLRVPAVTRL"
     regulatory      3053..3172
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            3166..>4050
                     /locus_tag="VF788_10055"
     CDS             3166..>4050
                     /locus_tag="VF788_10055"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEX8934515.1"
                     /translation="MSTSRTILSTTPSHDPTIEPSVTTGPITGSRKVYREVGAGLRVP
                     ARRVELTNGEHLDLYDTSGPYTDPDATIDVYRGLAPLREQWIGAREPSTQLAWARAGV
                     ITPEMQFIAAREAVDVELVRAEVARGRAVIPANHRHPESEPMIIGKKFLVKVNANIGN
                     SAVTSSIEEEVDKMVWATRWGADTIMDLSTGKRIHETREWLLRNCPVPVGTVPIYQAM
                     EKCNGDPTALTWEVYRDTVIEQCEQGVDYMTVHAGVLLRYIPLTVHRVTGIVSRGGSI
                     MAAWCLAHHRESFLYEHFE"
BASE COUNT          785 a         1294 c         1286 g          685 t
ORIGIN      
        1 cacggtcgtt atgcgcgcaa cgacctgttc ggcgtcggca ccgcagggcg tgacatcgcc
       61 gaggtgctcg caacggtgaa tcccccggta cagaaacgac tgcattatga ttccgccgag
      121 ctactcaccg gccgcaacgg agtgaatacg gtcccgaatg attcgggtta ccacgagcct
      181 gcgaggaact cgatgaggtg acgtgttgtc tggccggggg cctcttcggg gatgaagtgt
      241 ccggccgaga tcgggccgcc gcgaacctca tcggaccagg ttcgccatat ctccagcggc
      301 tggtacccgc tggcgagggc gccggtatca ctccacagca cgagaaccgg gcaggtgatt
      361 cgccgctgtc cccggtcggc ctcgtcgtgc tgatagtcaa gcgtcgcggc ggcacggtat
      421 tgctcgcaga tggcatggat gctctcggga gcgctgaact tgtcgatgta ctgggcgcgg
      481 atctgggctg ggaaggcgcc aggcacgtcc gaccacgagt cgagcatgtg gtcgacgagg
      541 acagccggtg ccttaccgat gagctgctct ggcaccggtg ccggggcggc caggaatgac
      601 cacacccaga atccaaggct gaaggccatg tccgcgcgac ggaacgcctc cccagtgggg
      661 atgatgtcga gcaccgccag ccgggtgaca acgcctggat ggtccaacgc catccggtag
      721 gagcagcgtg ctccccggtc gtgcccgacc acaccgaacc tgtcatatcc cagcgtgttc
      781 atgacctcga cctgatcacc ggcaagcgca cgcatgctgt acggcgcatg atccggcgtg
      841 ctcgacggct taccgctatc cccgaagcct cgaagatcag tgaccaccac ggtgaagcgc
      901 tcggctaagc atggcgccac ccgatgccac atgagatgcg tctgggggat gccgtgcaac
      961 agcaggatcg gtggaccctc gccgccccgg cgtccatgaa tcgtcgtacc cgctgtcgcg
     1021 atatcgaact cgtcgaaacc gtcaaacata acgtcaaacc ccctccagcc ccattacgat
     1081 attcacaggc atcccgtctc cacagccgag atctccccgc cacgcaaacg ggagagtgca
     1141 cgcgacatgt ggcacgcgac cctggcatcg tcggactgga ccggatcggc cgggccgtcg
     1201 cgctgcgggg gcacggcttt gcgatgcgag tgatagccca cgagccgtac ccggtcatgg
     1261 agttcgtgga agaccatcgc atcgagctga tgcggattga cgaggtgttc gcccagagcg
     1321 actttgtgac gctccatctg ccggccatgc ccgagaccga acggatcgtc aacgctgcaa
     1381 agctggccct gatgaaaccc accgcgttct tgatcaacgc tgaccgcggc aatctggttg
     1441 acgaggacgc ccttcatgcc gcggtgagat ccggccagat cgccgggggc ggcattgacg
     1501 cgtggacgac cgagccgatg accgatcagc gctgggctga gctggacaac gtcgtcctca
     1561 ccccgcacag cgcggcggag atcgtggtga aggtcatgcg cggggagcag ccagcgcagg
     1621 tactcaaccc ggaggtgtgg gaccgatagg cctcctacag ccgcgtgacc gccggtacgc
     1681 gcaaccgatt gcgggtatcg aggactcgat gggcgtgctg ctcgaagagc tcccaggcga
     1741 tcgcatcgtg gtcggcgagc acgacaacca gatcagtgtc ggtgatctga cgcggctcgc
     1801 agggcaccat ctgaatgaaa caggggatcg cgtcctcgct gacgagcgga tcaatcgccc
     1861 ggagatcggc gcccagatcg tcaagtctct tggcgacggc gatcgccggc gatttcctgg
     1921 tgtcccgaga gttccgtttg taggccagtc ccaccagcag gatccggctg cctttgacgg
     1981 actttcgttg ctggttgagc tgtgcaacta cccgggacac cacatggtcg ggcatgtggt
     2041 cgttgacatc gttggcgata tcgacgaaac ggaaggcccg acccagagac cgccgcgcct
     2101 gccaggatag gtaggacgga tcgatcggca agcaatggcc gccgactccc gggccaggag
     2161 tgaacttcat gaatccgaac ggctttgtgg ccgccgcgtc gattaccgac cacacgtcga
     2221 gaccgagacc atggcagtac gtggcgagct cgttgaccag ggcgatattg acgtggcgga
     2281 aagtgttttc cagcagcttg gcaagctcag cctcccgcgg tgccgacacg ggaacggtcc
     2341 gctcgacgag ccgaccatag aaatcctgga gcgcgtgcag tgaggcctcg ttcactcccg
     2401 aaataatctt cggagtgttg tggaaccgcc aggtctcgtt tcccggatca atgcgttccg
     2461 ggctgtagcc ggctgagaac tgcttcccag cccgtagatt tgacccggcc tcgaggatcg
     2521 ggatgaagat ctcctcggtg gtgccgggat agctggtgga ctccagcacg acgcagcatc
     2581 caggcctgat tcgtggggcg atggtagccg cggcatcctc cacgtaactc agatcggggg
     2641 cgccatcccg caatggagtc ggcacacaaa ccactgcgac atcgaaaccg gccagcgccg
     2701 ccggatcgtc ggtgggcagg taacgtccgg tgctcatcgc gcctgcgaga tcactgtcgg
     2761 taatgtcatc gacatatgtc tgcgctttac gcagacaatc gacacgggtc ttgtcgatat
     2821 caaaaccaac aacgtcaaaa ccggcctcaa cagcccggat agcgactggt aatcccacgt
     2881 aaccctgacc gaccacgacg acacggcgcg gtgaattgtc ggaaatgccg tacacggaga
     2941 cccccagttt gttgtcaccg gtagcgacca ctcgaatact agcggtacac cgatcaatcg
     3001 tcacccggcc cttttgcccg ttcggtgccc cggcgctacg gtcgggagag tcaattgcac
     3061 acgcgggagc tcgcaccgaa gcgggctgag agggcggctg ggcaccccgg tgccgccgac
     3121 cgcaggaacc tgtccgggta atgccggcgt agggaggctg gatcgatgag cacgtccagg
     3181 accatattat ccacgacccc gtcgcacgat cccaccatcg agccctcggt gaccaccggc
     3241 cccatcaccg gctcgagaaa ggtctaccga gaggtgggcg cagggttgcg ggtgcctgct
     3301 cgccgggttg agttgaccaa cggcgagcac ctcgacctct acgacacttc gggtccctac
     3361 accgacccgg acgccaccat cgatgtctat cgcgggctcg ccccgctgcg tgagcagtgg
     3421 atcggagccc gcgagccatc tacccaactt gcctgggccc gggccggcgt catcaccccg
     3481 gagatgcagt tcatcgccgc ccgagaggcc gtcgacgtcg agctggtgcg cgccgaggtg
     3541 gcccggggcc gcgcagtgat cccggccaac caccggcatc ccgaatccga gccgatgatc
     3601 atcgggaaga agttcctggt gaaggtgaac gccaatatcg gcaactcggc ggtcacctcc
     3661 tcgatcgagg aggaggtgga caagatggtg tgggccaccc gctggggcgc cgacaccatc
     3721 atggatctgt ccaccggcaa gcggatccac gagacccggg agtggctcct gcgcaactgc
     3781 cccgtcccgg tcggcacggt gccgatctac caggcgatgg agaaatgcaa cggcgatccc
     3841 acggccctga cctgggaggt ctaccgggac accgtgatcg agcaatgcga gcagggtgtc
     3901 gactacatga ccgtgcacgc cggtgtgctg ctgcgctaca tcccgctgac ggttcaccgg
     3961 gtgaccggca ttgtttcccg tggcggatcg atcatggcgg cctggtgcct ggcgcaccat
     4021 cgcgagtctt tcctctacga gcacttcgag
//
LOCUS       DASVXZ010000484         3755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_500423, whole genome shotgun sequence.
ACCESSION   DASVXZ010000484 DASVXZ010000000
VERSION     DASVXZ010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500423"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..348)
                     /locus_tag="VF788_10060"
                     /pseudo
     CDS             complement(116..348)
                     /locus_tag="VF788_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019816602.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            350..658
                     /locus_tag="VF788_10065"
     CDS             350..658
                     /locus_tag="VF788_10065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934516.1"
                     /translation="MLPVPIELVEEALSAVDDGAGAVHAATVERDTDSSASVTAVEAL
                     RLGVMFLAATQAGLFAADLEARGFLAGVGKSILIVIVILVALGALIGFSVARRAGGRR
                     "
     gene            complement(831..1700)
                     /locus_tag="VF788_10070"
     CDS             complement(831..1700)
                     /locus_tag="VF788_10070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934517.1"
                     /translation="MANIDGLSQGLQELRDSIAETAQAAPQIARSEIRREGRAYFRGA
                     VVAAVITSLLVGIPLFLLAERFSAYTNADEARTAQLQTSAADIRRLAQGAHDLGVQAN
                     AELSRRGLATVPIPTPGTAPDSQVLAAASTAQVAAKIAAETIVVPTPAQIREEIAAQL
                     AKLPPPPVGPAPQQLNDAVQAYLAANSERLRGPRGNQGEPGKSPPCLAEPAQCQGAQG
                     QPGVRGEPPVGWTVAEADGSTTTCQRAAEFDAAAPQYRCAHAASPSPSPTPSPTTTSP
                     PPAVADPLPFPVK"
     gene            complement(1687..1956)
                     /locus_tag="VF788_10075"
     CDS             complement(1687..1956)
                     /locus_tag="VF788_10075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934518.1"
                     /translation="MEAGSSGPPWLTITIAGLSFVGVVITALIGPIIVDRRRSGWAGP
                     ESAEPAMIAQRADEAVALIQHEITDLQNRVGRLETLQMAGAHGQH"
     gene            complement(2100..2513)
                     /locus_tag="VF788_10080"
     CDS             complement(2100..2513)
                     /locus_tag="VF788_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsr2 family protein"
                     /protein_id="HEX8934519.1"
                     /translation="MAQKTIVTLIDDLTGEEAEDITTVEFALEGVTYEIDLADDNAAK
                     LRDNLSRYVAAARKTSGRRPGNRGTDRSAGRGAGNGSASRSGYNRDTLRAIREWAKQN
                     GHSVSDRGRLPLNVVSAWEANHQAVKNGHVPAFSG"
     gene            complement(2667..3650)
                     /gene="rlmB"
                     /locus_tag="VF788_10085"
     CDS             complement(2667..3650)
                     /gene="rlmB"
                     /locus_tag="VF788_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEX8934520.1"
                     /translation="MAGNSQRKGAMRKPGTKKGAVVGSGGQKRKGLRGRGATPPAELR
                     PGHPAQRHGSTQRHPVQHGEVRGQTAARARRRSGSEPEEIVLGRNPVLECLRAAVPAT
                     ALHVAIGVDLDDRVSESIRLAADAGLSVLEVPRADLDRLAGGALHQGMALHVPPYAYA
                     TAEDVLAAAQESGAPPLLVALDGVTDPRNLGAVVRSAAAFGSHGLLVPQRRSAGMTAV
                     AWRTSAGTAAHLPVARVTNLVRTLKNFASAGLMIVGLDAGGAMSFDSFSLATGPLVLV
                     LGSEGRGLSRLVRETCDAIVSIPMVGPVESLNASVAAGVMLAEVARLRRLT"
BASE COUNT          655 a         1252 c         1218 g          630 t
ORIGIN      
        1 ggcgcgccgc tggcccgcat cgagctgcag acactgttcc ccgcgctgct gggccggttc
       61 ccgacgctgc ggctggcggt tccgattgag tcactgcgcg gacgggacga gctactcacc
      121 gggggcttgg tggagctgcc tgtgacatgg tgagcgggct atgccggtac aggtcacgaa
      181 gcaacgcgat ctccgcgccg tggtggatga tttcccggtt gatgtgcagc actaacgcgg
      241 ccatcggtag tcgaagctca ggtagtcgat cgaacggccg ccgaagtggt tgctggcgcg
      301 catgccgagc acgcccacaa taatgtggcc caaccgccag gcgtaggtga tgctgccagt
      361 gccaatcgag ctggtcgagg aggcactgag tgcggtcgat gatggtgccg gtgccgttca
      421 tgccgcaacg gtagagcgcg acaccgacag ttcggccagc gtgacagcgg tcgaggccct
      481 acgattgggt gtcatgttcc tcgctgcgac tcaagctggt ctattcgccg ccgatctcga
      541 ggcccgaggg ttcctggcgg gtgtcgggaa gtccatcctg atcgtgattg tcatcttggt
      601 ggccctcgga gcgctgatcg gattctccgt ggcgcgcagg gccggtgggc gccggtagtg
      661 aaagcttaac ctggatctgg aaatccctat ccgcccgcgc acagggcggg tggaacccgg
      721 tgggcgagga gaggtcaggt cctcgacccc acccaccgag ctgctcgcga gtcgcgacga
      781 gcattttatg ttcgagagtt gcggtcgatc ggttcaccag tcggatcagg tcacttcacc
      841 gggaacggca agggatcagc cacggcgggc gggggcgatg tggtcgttgg cgagggcgta
      901 ggtgacggcg acggcgacgc cgcatgcgca caacgatact gcggagcagc cgcatcgaat
      961 tcggcagcac gttggcatgt ggtggtggaa ccgtcggcct ccgcgaccgt ccagcccacc
     1021 ggcggctcac cgcggacgcc cggttgcccc tgggcacctt gacattgtgc gggttcagca
     1081 aggcaaggtg gggacttacc cggctctccc tgattgcccc gagggccacg caacctctcg
     1141 ctgttcgccg cgagatacgc ctgcacggca tcattaagct gttgcggcgc cggtcccacg
     1201 ggcggtggag gcagcttggc cagctgggcc gcgatctcct cccgtatttg tgcaggagtc
     1261 ggtaccacga tggtctcagc agcgatcttc gcggcaacct gcgcggtgga ggccgcggcg
     1321 agcacctggg aatcgggcgc ggttcccggc gtgggaatcg ggaccgtagc caggccgcga
     1381 cggctgagct cagcattggc ctggacaccg agatcgtgcg caccctgcgc gagccgccgg
     1441 atgtcggccg ccgaggtctg cagctgtgcc gtacgcgcct cgtcagcgtt cgtgtacgcc
     1501 gagaaccgct cggcgagcag gaacagcggg atgccgacca gcagagacgt gatcaccgca
     1561 gccaccactg cgccgcgaaa atacgcccgt ccttcacgac ggatttcact ccgcgcgatc
     1621 tgcggggcgg cttgcgccgt ctccgcaatc gagtccctca gttcctgcaa gccctggctg
     1681 agcccatcaa tgttggccat gcgcacccgc catctgcagc gtctccagcc gcccgacccg
     1741 attctgcagg tcggtaatct cgtgctggat gagcgcgaca gcctcgtcgg cccgttgcgc
     1801 gatcatggcg ggctcggcag attcgggccc agcccaccct gatctacgac ggtcaacgat
     1861 gatcggaccg atcagggccg tgatcacgac tcccacgaag gagagcccgg caatagtgat
     1921 cgtcagccac ggcggccctg agctccccgc ctccacgcta gctcagcccc cactgttcgt
     1981 ccgtgagctc taccccgccg cccagaaccc aaggtcacag aacagatccg tatcaagagt
     2041 gcagcggagc ggtcgcataa ccggacatgc ctatagtgca gttcagatac cgggaggcgc
     2101 tatcccgaaa atgcgggtac gtgcccgttc ttcactgcct ggtgattcgc ttcccacgca
     2161 ctaaccacgt tgagtggcag ccggccgcgg tcactgacac tgtggccgtt ctgcttggcc
     2221 cactcgcgga tcgcacggag ggtgtcccgg ttgtaaccgc tgcgcgacgc ggaaccatta
     2281 ccggcccccc gaccggccga ccggtcagtg ccacgattgc cagggcgacg cccactggtc
     2341 ttgcgagcag ctgcgacgta acgggacagg ttgtctcgga gcttggcggc gttgtcgtcc
     2401 gccaggtcga tctcgtacgt gacaccttcg agggcgaact caactgtcgt aatgtcctca
     2461 gcttcctcgc cagtgaggtc atcgatgagt gtgacgatgg tcttctgagc cacgggtacg
     2521 gattctcctt gtcggaagga acgcggcata gacacaactg ccgtgtgatg aacgctgacc
     2581 gcgataagat acacaacgca tccgcgatgc ttacctgcgg catgccaaaa gtgcttcctc
     2641 cacccgcagc gcagcagaag agcagttcag gtgaggcggc gtaggcgagc aacctcggca
     2701 agcatgacgc cagcagcgac tgaggcgttg agcgactcga ccggacccac catcggtatc
     2761 gacacgatcg catcacaggt ttcgcggacg agccgggaca gaccccgccc ctccgaacca
     2821 agaacgagga ccaacggtcc ggtggccagc gagaaactat cgaatgacat tgcgcccccg
     2881 gcgtcgagcc cgacaatcat caggccggcc gaggcaaaat ttttgagtgt gcgcaccaga
     2941 ttggtgactc gggccaccgg cagatgagcc gcagtacccg ccgacgttcg ccatgccact
     3001 gccgtcattc ccgccgaacg ccgctgcggt accagcaatc catgcgagcc gaacgctgcg
     3061 gcgctgcgga ccacagcgcc gaggttgcgc gggtcggtca ccccatccag cgcaaccagc
     3121 aacggcggcg ccccggactc ctgcgccgcg gccagcacgt cctcggcagt tgcgtacgcg
     3181 tagggcggca cgtgcagcgc cattccctgg tgcagggcac caccggccag ccgatcaagg
     3241 tcggcccggg gcacttcgag aacggacagt ccagcgtcgg cggccaaccg gatggactcg
     3301 ctgacccggt cgtcgagatc caccccgatg gcgacatgca gtgcggtggc cggcactgcg
     3361 gcacgcaggc attccagcac cgggttgcgc ccgagcacga tctcctccgg ttcgctacca
     3421 ctgcgacggc gggcacgcgc cgcggtctgg ccccgaactt cgccgtgctg caccgggtga
     3481 cgctgcgttg aaccatggcg ttgggctgga tgacccggcc gcagctcggc cggcggagta
     3541 gcgccccgcc cgcgcagccc cttgcgtttt tgcccgccgg agccgacgac cgcgcccttc
     3601 ttggttcccg gcttacgcat cgcacccttg cgctgggaat taccagccat cagctcccct
     3661 tgaccgccca taccggacca tcgggggtgt cctcgacggc gatcccggcc gccaacaact
     3721 gatcacgcac cgcgtcggca gtcgagtaat cacgg
//
LOCUS       DASVXZ010000485         4121 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_52183, whole genome shotgun sequence.
ACCESSION   DASVXZ010000485 DASVXZ010000000
VERSION     DASVXZ010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4121
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52183"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VF788_10090"
     CDS             <1..284
                     /locus_tag="VF788_10090"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEX8934521.1"
                     /translation="ASRAQRVRMLGASAIDLAWTAQGRLDACIIFGNKPWDTSAGVLI
                     AREAGARILDLHGANHTPDSAATIAVSPSLEHELMAAVHVTLASTASGE"
     gene            712..1059
                     /locus_tag="VF788_10095"
     CDS             712..1059
                     /locus_tag="VF788_10095"
                     /inference="COORDINATES: protein motif:HMM:NF017880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF952 domain-containing protein"
                     /protein_id="HEX8934522.1"
                     /translation="MLIYKILLPTEWAEFETTGHFNGSPFDRSSGFIHCSSRQQVGGT
                     AMRVFAHEPELAVVALDTQMLGDSVRWEEAPSGGLFPHVYAALPLSAVVVVHRIAGAS
                     LVNEVLPPPVTHG"
     gene            complement(1529..2515)
                     /locus_tag="VF788_10100"
     CDS             complement(1529..2515)
                     /locus_tag="VF788_10100"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX8934523.1"
                     /translation="MQLGMAFWGSKALLSAVELGVFSELASAGALNGDTLRKRLGLHP
                     RSSRDFLDALVALGMLEREDGRYANTPATGLFLDRAKSSYVGGMLEMANARLYGFWGS
                     LTEGLRTGLLQNKAKGGGQDMFEVIYPDPVKLAQFARAMSALSADTARAIAAKFPWQE
                     HRSVIDIGCAEGAVPIQIALAHDHITGGGFDLPALGSIFDAYVAGFGLGERLGFTAGD
                     FFTDPLPQADVLVMGHILHDWDLDEKRLLVRKAYDALPEGGALIVYDAIIDDERRSNA
                     FGLLMSLNMLIETPGGFDYTGADCRAWMHEAGFCDSYVEHLIGPDSMVVGIK"
     gene            3098..3310
                     /locus_tag="VF788_10105"
     CDS             3098..3310
                     /locus_tag="VF788_10105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934524.1"
                     /translation="MRVGLPPTAPGASRAAPWLAVVRVAAPTTEFGAGSCPQFVVMAA
                     VAPSALGVAVNKQWIAMTEAGTNPKP"
     gene            complement(3868..>4121)
                     /locus_tag="VF788_10110"
     CDS             complement(3868..>4121)
                     /locus_tag="VF788_10110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934525.1"
                     /translation="IPNRQRLAAVAVLGEREPQLSAIQRLALVDAAAWWLSEPNGGEE
                     LAYALLAAICSGAVTTEHAYLALITPSDEPSDGGEVSSS"
BASE COUNT          790 a         1373 c         1237 g          721 t
ORIGIN      
        1 ttgcttctcg cgctcaacgc gtacgcatgc tcggtgcttc tgctattgac cttgcatgga
       61 ccgctcaggg tcgactcgat gcatgcataa ttttcggaaa taagccctgg gacaccagcg
      121 cgggcgttct catcgcccga gaggccggtg cccgaatcct cgaccttcac ggcgcgaacc
      181 acactccaga ttccgccgca actatcgcgg tgagcccttc gctcgaacat gaattaatgg
      241 ccgcagttca cgtcactcta gccagcacag cttcgggcga atgacctcag gtccttccgt
      301 aacggtaacc taactgcgcg taggtccgag tcacctgacc acccgagaca gagaacatgg
      361 tcagcactaa gatcccatcg tccgcctatg gcatcgcaaa cgtcgtccca acaactaagg
      421 tgaccgcggc gcaccgacag ctgcctcgag ctgggctaac cgaagatcca cagttgccga
      481 accattctgg acaccccggg ccatcgatcc agacgcagca gatcgagacc gggtcaccag
      541 cgttcgtcgc gatgccacca gcttcggacc gtcatggtgg ccccggtgcc agcccgctcc
      601 cggggggtgg caccgggggc acaggggatg gcgggcaggg ggaaggctta gcgtggcaag
      661 tgcacggagg ctgagtggtc ggttctgcca tccccctgcg accgtagtgc ggtgctgatc
      721 tacaagatct tgttgcccac cgagtgggcc gagtttgaga ccaccggaca cttcaatggt
      781 tcgccatttg accgcagcag cggcttcatc cactgctcct cccgtcagca ggtgggcggt
      841 acggccatgc gggtgttcgc gcacgagcca gagctggcag tcgtcgccct cgacacgcag
      901 atgctcgggg actccgtgcg ctgggaggaa gcccccagcg gcggcctctt cccacacgtg
      961 tatgcggctc tgccgctgag cgccgtcgtc gtagtacatc gcatcgccgg ggcctcgttg
     1021 gtgaacgagg tgctaccacc acctgtcacg cacggctaga cccgcacaac catcggtaca
     1081 gcccagcggc cgacaacacc cggaacagcc attatcgccg acagcctgcg caggtcgacg
     1141 gcaccgaccg acgccagctc acaagctgcg tcgacaaggc cgcagtcgtt gaccccgctc
     1201 gggcggcgtt gccaccatcg gtcacacggc aatgggaagt tgtcccggca atctcacaaa
     1261 cagcaccacg gaccgctggt agcacgcgcg caccagtcct caaggacgcg tcccactacg
     1321 agcacgaacg tcacccacgc cgacccgaac cacgacactg cgcgcggcct gacggccgtg
     1381 ctcggtcgcg gccgggtcgg ccggccgcga ttggtgctcg gatgcgcgcc gccagtcatt
     1441 gggtagatcg caccacacca cagccacggg tagcacgccc gaaatccttc agcggcccga
     1501 cgccgtgtcg cagctgtagc tagaccgcct atttgatccc gacaaccatc gagtcgggcc
     1561 caatgaggtg ctcgacgtag ctgtcgcaaa agcccgcctc atgcatccag gcacggcaat
     1621 cggcacccgt gtagtcaaac cctccgggtg tctcgatgag catgttgagg ctcatcagca
     1681 ggccgaaggc gttactgcgc cgctcgtcgt cgatgatcgc atcgtagact atcagcgcac
     1741 caccctcggg cagggcgtcg taggccttac gcaccagcag gcgtttctcg tcgaggtccc
     1801 agtcgtgcag gatgtggccc atcacgagca catccgcctg gggcagtggg tcggtaaaga
     1861 agtcgccggc ggtgaagccc agccgctcgc cgagcccgaa gcccgcgacg tacgcgtcga
     1921 agatcgaccc gagcgcgggc aagtcgaaac cgccgccagt gatgtggtca tgcgcgaggg
     1981 caatctgaat cggcacggct ccctcggcgc agccaatgtc gatcacgctg cggtgctcct
     2041 gccagggaaa ctttgccgcg atggctctgg ctgtgtcggc gctgagtgca ctcatcgcgc
     2101 gggcgaactg cgccagctta accggatcgg ggtaaatcac ctcgaacatg tcctgaccgc
     2161 cgcccttggc cttattttgc aacagcccgg ttcgcagacc ctccgtcaga gacccccaaa
     2221 agccgtacag acgcgcgttg gccatctcca gcatgccacc cacgtaagac gacttggccc
     2281 gatcgaggaa caagccggtg gccggcgtgt tggcgtagcg gccgtcctcg cgctcgagca
     2341 tgcccagcgc gaccaacgcg tccaagaagt ctctcgagct gcgcgggtgc agccccagcc
     2401 gcttccgcag cgtgtcgcca ttcagcgcgc ccgcgctcgc caactctgag aataccccca
     2461 gctcaacagc gctgagtaac gctttcgagc cccaaaacgc catcccgagt tgcataatcg
     2521 cagcgggtgt cacctcggta tcgtgctcga ccgccgacgc ttgtacttcg ctcaccaacg
     2581 caccccattt ccgagaacag gtctgtcggc tggctagcct acgatcgcca ccgcgacctg
     2641 cacagcgtca aacggaggcc gcttaacaat gccaagggcg atcggatcaa gcccaattcc
     2701 gcgaggagct ggcggcttac gcagcgctcg tcgatcgtga cgccgaagct ctacaacgag
     2761 atggggcgcc tgagatatcg ctgcacgatg tcgcaggttg gtcggcacac acaagtccgg
     2821 cggtgtcgcc actggagttc aagtcgaggc cccgaacacc tcatccggtc caggacatcg
     2881 aagcttggtg cggtctaccc cctcacccat cggccgaatg atctctaccg tcctgccggt
     2941 gcgtcattga cggtgcggat ggttcggctg gcttcgtcgg catcgtgccg gcttcgacgt
     3001 taacctgccg cagcccgtac gaccgtggcc gtccgcaggt actcactgcg ggcagtgctg
     3061 ccgcgccgct tccgctcctc ggtgctgtgc gcctccggtg cgggtcggct tgccaccgac
     3121 tgctccgggc gcctcgcgcg ccgcgccgtg gctggctgtc gtcagggtgg cggcgccgac
     3181 caccgagttc ggggccggga gttgtccaca gttcgtcgtc atggccgctg tcgcaccgtc
     3241 ggcattggga gtggcggtga acaaacagtg gatagctatg accgaggcgg gcaccaatcc
     3301 aaagccctga cggcgcagga ccgcagcctt ccaagctggt gctcgcgaaa cacgaagcgg
     3361 atgcgaaatg gtcacgagtt ccaaccgttg atgatcaaga cgaacagcac gtcaagtccc
     3421 atgcacagcc tgctactgac gaaccattcc gtgtgctgca ggttcgaacc ctgccgggag
     3481 ctccaccacc acgaagggat ctccgcgagc aatcgagacc tggtggtctc atctttggtc
     3541 tcatccgcct acgttcgtct acgttcattg gtgttcagag caatgcggcg atgcaggtca
     3601 cgaacgtgag cgttactcgg cgaactatta tccagacttc tgaaaatcag aagatcggcg
     3661 attccaccac tgccaggtga ccatctcgca ttggcggtcc cgtcggcgtg cagcaatgag
     3721 acctggttac ccacgtgacc aaagccctgt gaccgtagga gtgacggcta attgcactct
     3781 ggcgcagcga gagatagtcc tacgcaccga cagtgcaaca tattcgggat tggggttcgg
     3841 tgcgcggttc ggtccgtaga ccgataacta cgaggaagag acctcgccgc catcgcttgg
     3901 ttcgtcggat ggagtgatca aggcgaggta ggcgtgttcc gtcgtgaccg ctcccgaaca
     3961 gatcgccgca agtagagcat acgcgagctc ttcgccgccg ttcggctccg agagccacca
     4021 tgcggcagca tcgaccaggg caaggcgttg tatcgcagat agctgcggct cacgttcgcc
     4081 caggactgcc acggcggcca agcgttgccg gttggggatg a
//
LOCUS       DASVXZ010000486         1583 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1217979, whole genome shotgun sequence.
ACCESSION   DASVXZ010000486 DASVXZ010000000
VERSION     DASVXZ010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1217979"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..1246)
                     /locus_tag="VF788_10115"
                     /pseudo
     CDS             complement(18..1246)
                     /locus_tag="VF788_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240766.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(1377..>1583)
                     /locus_tag="VF788_10120"
     CDS             complement(1377..>1583)
                     /locus_tag="VF788_10120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934526.1"
                     /translation="TIIVDPHDGGQRTFRRITPQPFRNCKAHYLHVLRFLMGFVPARS
                     EMRQGGAPQPPVGEHSRYLVRCET"
BASE COUNT          312 a          474 c          480 g          317 t
ORIGIN      
        1 cccacggttg taagttgtca agcaacttct tgttgatctt gttgtggagt ggtccaggcg
       61 gtggcttcgt cgtaggtggt gcgggtgcgc agacagccat ggaggatgcc gacgagtcgg
      121 ttggccacgc ggcggagggc gtcattatgg ccgatgcggc gagcgcgcat tgcgtcgtag
      181 tgacggcggg cgccgggtga ggcggtcagg gcggcgaagg cttgttggaa taatgcatcg
      241 cccagccgtc ggtttcgggc gtagcgggcc aatacgattg cttttgagcc agaagcgcgg
      301 gtcaccggag aagttcccgc ataatttctt cgtgcttttc cgctgacata gcggtgaggg
      361 tcgtctccga actcggcgag cgcccgagcg ctgagaatca ccccgagccc gggttgactc
      421 aggtagatct tagcgtccgg gtgtcggcca aaattttgtt ccacctcgct ggccagcatc
      481 gagatttgct tcaccagttc gctgatgatc gacactagtg cccgagtgga tgcgccgaat
      541 gcctgagcaa ccgcgggaag cgcgcgcagg tgttcggttt gtaatgccgt gtgaatctta
      601 ctcgcggtcg ctttgaggta gcgtttgcga ccggcttcgc gcagcagctg gctgatctgg
      661 tccacggtca gggcctggcc ctgctcgggt gtgggcgcga cggtcaagac ggccagggca
      721 tcgcgtccgg ctaggtcatc gaaggcatcc agggccgctg gatagtactg acgcaacatc
      781 gaatgcagct ggttagtgtg ccgttggcgg gtccaaacca gattctgatg accgcggact
      841 agtactgtca tcgcttcgac aaggtctgaa tcacccgcga tctggcgatg atgagcccgg
      901 tctaggcgaa ctaactcagc caagacatgc gcatcaccac gatccgattt agcgcccgag
      961 gtcgaatgac gttcccgata ccgtgccact tgcatcggat tgatcgcata cacctgatag
     1021 ccagcggcga ctaacgccgt cacccacgga ccccgatccg tttcgatacc gatcacaaca
     1081 tcggtgacct caccgtcttc gggcaggtat tcagcgacca acgcatggaa accggccatg
     1141 cctcaacacc ctcactcaga cgccgccgcg ccaaccgctg gccagtctca cccaccactt
     1201 cgacatcgtg gtgatcttcg gcccaatcat tgccaacaaa caacacccat attccccttc
     1261 ccccaggtgg tcagcacaaa ggagaaatat agctacctaa tggatcagtg ctcaccggca
     1321 cgccatccca ccagccatca cttctcctca ccaaccggca ggggcacggt ctagccctag
     1381 gtctcacacc ggaccaggta acgtgagtgc tcacccaccg gcggctgagg cgcaccaccc
     1441 tgccgcatct ccgaccgggc cggtacgaac cccattagga aacgtaggac gtgtaaatag
     1501 tgagccttgc agttgcggaa gggttggggg gtgatccggc ggaaggttcg ctgtccgccg
     1561 tcgtggggat cgacgatgat cgt
//
LOCUS       DASVXZ010000487         2056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_142703, whole genome shotgun sequence.
ACCESSION   DASVXZ010000487 DASVXZ010000000
VERSION     DASVXZ010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142703"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..106)
                     /locus_tag="VF788_10125"
                     /pseudo
     CDS             complement(1..106)
                     /locus_tag="VF788_10125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229444.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            complement(113..1516)
                     /locus_tag="VF788_10130"
     CDS             complement(113..1516)
                     /locus_tag="VF788_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HEX8934527.1"
                     /translation="MPVGPRLSYEELAALVVVQAEQIAQLRAEVVELRRQLGQNSRNS
                     SKPPSSDSPFVKPAPRSLRGKSGRKPGGQKGHSGSTLAQVSDPDEMLRHEPGRCGGCG
                     AGLVDAPEVGLERRQVFDLPPMKVRVIEHRLIARRCACGTTTCGNAPEGVTAPVQYGP
                     RITAIILYLYVGQFLSKKRTAVAMAELFGTPVSQGTVATMTHRAAQGLEEFLHQVRDR
                     LAKAEVAGFDETGLRVAGRLHWVHCARTGKYTLITCHSKRGKAGIDDAGVLGRFRGTA
                     VHDAWAPYDTYLDVTHQLCCAHALRELAAVAETAPETTWCWASQVSDALVAMQKLVTE
                     AITAAQTIDPSALATQIHHYRSAAQIGINQTTARSDAVMKRHNALARRLIERQDDYLR
                     FTHDWRVPPDNNGSERDIRMIKLRQKVSGCLRTLAGAQQFCAIRSYLSTTAKHGKHFF
                     DTLVALAEGHPWLPAIQ"
     gene            complement(1547..1678)
                     /locus_tag="VF788_10135"
     CDS             complement(1547..1678)
                     /locus_tag="VF788_10135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934528.1"
                     /translation="MDWTAEEFTFFVDGAKYTTGTSVDSAFDLSSTVTGQLLCGVAG"
BASE COUNT          376 a          666 c          637 g          377 t
ORIGIN      
        1 tgcccgccct gatcagatcg tccaataccc gcaaggtctc ctctaatgag gtgcgcgggt
       61 caaagccgtg aatatggtac aagtcgatgt agtcggtccg taactgatca ggtcattgaa
      121 ttgcggggag ccatgggtgg ccctcggcga gggcgacgag ggtgtcgaag aagtgtttgc
      181 cgtgtttggc ggtggtggag aggtagctgc gtatcgcgca gaactgctgg gctccggcga
      241 gagtgcgcag gcaaccggac actttctgcc tgagcttgat catccggatg tcgcgttcgg
      301 atccgttgtt gtccgggggc acccgccagt cgtgggtgaa gcggaggtag tcgtcttgtc
      361 gctcgatcag cctgcgggct agtgcgttgt gccgcttcat gaccgcatcg gagcgtgctg
      421 tggtctggtt gatcccgatc tgggcggcgg agcggtagtg gtggatctgg gtggccagcg
      481 cgctcgggtc gatggtctgg gcagcggtga tcgcctcggt gaccagcttc tgcatggcca
      541 cgagcgcgtc gctgacctgg ctggcccagc accaggtggt ctcgggtgcg gtctcggcga
      601 cggcggctaa ttccctcagg gcgtgcgcgc aacacagttg gtgggtgaca tcgaggtagg
      661 tgtcatacgg tgcccaggcg tcgtgcacgg cggtgccgcg gaaccggccc agaacaccgg
      721 cgtcgtcgat cccggccttg ccgcgtttgg agtggcaggt gatcagggtg tacttgcccg
      781 tgcgggcgca gtgcacccaa tgcagccgac cggccacccg cagcccagtc tcatcgaacc
      841 ccgccacctc ggccttagcc aggcgatccc ggacctggtg aaggaactcc tcaagtcctt
      901 gggcggcccg atgagtcatc gtcgcgaccg tgccctggga gaccggcgtg ccgaatagct
      961 cagccatcgc gaccgcggtg cgcttcttcg agaggaactg cccaacatac aaatagagga
     1021 tgatcgcggt gatccgcggc ccgtactgca ccggcgccgt cacaccctcc ggagcgttgc
     1081 cacaggtggt ggtcccgcaa gcgcaacggc gcgcgatcag ccggtgctca atcacccgca
     1141 ctttcatcgg cggcaagtcg aacacctgtc gccgctccag gcccacttcc ggcgcgtcca
     1201 ccaagccggc gccacaccca ccgcatcggc cgggctcgtg ccgcagcatc tcatccggat
     1261 cgctgacctg cgccaacgtc gaacccgaat gacctttctg cccgcccggt ttacggccgc
     1321 tcttaccgcg caacgaacgc ggcgcaggct tgacgaacgg cgaatccgac gacggcggct
     1381 tcgaagagtt ccggctgttc tgccccaact gccgccgcaa ctccacaacc tcagcccgaa
     1441 gctgagcgat ctgctccgcc tgcaccacga ctaaagcggc cagctcctca taggacagac
     1501 gcggaccaac aggcaccaca ccatgatcaa cgaactggcg acgagatcaa ccagccacgc
     1561 cgcacaagag ctgaccagtt acggttgatg aaaggtcaaa agctgaatcg acggaggtgc
     1621 cggttgtgta cttggcgcca tccacaaaga aggtgaattc ctcggcggtc caatccatcc
     1681 ggtacacgtg gaatccttca ccaattccta cggcacctga ggatgtacca tacccgaggg
     1741 ccattgcggg gcatggatgc tggactcgac ccgtgagaac ccgtaatccc cgactacatc
     1801 tcggccatgc gagtcccgtt ccaccgtctt cgttgcccga ataacaaggt gccctttgcc
     1861 gtcgaggaac gagttccgcc gcgaatcggc gtagaactgt agctcgttgt ttccccagcc
     1921 ccctccaccg atatcgtggg accttgaatg gcctgcgcat ctgtggcgcc taagcacgcg
     1981 taccgcccgc ccaaatctcg gtggctttgg agattacgct caacctcctc acgagctacc
     2041 cgcgccgggc tcaagc
//
LOCUS       DASVXZ010000488         5887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1012017, whole genome shotgun sequence.
ACCESSION   DASVXZ010000488 DASVXZ010000000
VERSION     DASVXZ010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5887
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012017"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1841)
                     /locus_tag="VF788_10140"
     CDS             complement(<1..1841)
                     /locus_tag="VF788_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015785981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934529.1"
                     /translation="MDNSWSLLNSMARQRSTPRSLAPGTLRRIITFAKPHRRSLLIFL
                     ALSTVSAMLAVATPVLAGRVVDGIVGHAEVTLVAGLAVLIALLAVLDAGIGLAARWQS
                     SRLGEGLILDLRRSVYEHVQRMPVAFFTRTRTGALVSRLNNDVIGAQSALTSTLSGVV
                     TNAIQLVLTLVVMLTLSWQVTVLALVLLPIFVLPARGIGARMAELRREASTHNAAMTT
                     QMTERFSAPGATLVKLFGRPEAEAAEFSHRASQVRDIGVRSAMSARVFLTALTLVSAL
                     AQALVYGLGGWLALRGDIAAGTVVSLALLLTRLYSPLTALANARVDVMTALVAFERVF
                     EVLDVRPMITERPDAIAVPPGEVSVEFDNVRFAYPAAQQVSLASLEEVATLDARGGAE
                     VLHGVNFRAEPGQLVALVGSSGAGKSTIASLVPRLYDVDSGAVRLGGVDVRDLSFAAL
                     RDTVGVVTQDGHLFHDSIAGNLRFAAPEALDQELWDSLRRARLEELVQSLPDGLDTVV
                     GDRGYRLSGGERQRLAIARLLLAQPRVVILDEATAHLDSESEAAVQAALAEALHGRTA
                     LVIAHRLSTIRAADQILVIEDGLVVERGSHEELLAAHGRYAQLHRTQ"
     gene            complement(1958..3049)
                     /locus_tag="VF788_10145"
     CDS             complement(1958..3049)
                     /locus_tag="VF788_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HEX8934530.1"
                     /translation="MTIAAEHPGTATPATQFTLPPASEAASPPERRGVQRDRVRLLVA
                     RPGQIEHRHFFDLPLLLAPGDLIVVNTSATLPAAVPGRRDDGQPVPVHVSTSVGRAEW
                     VVEVRRIDARGPDLQTCPGERIHLPGGVHLQVTTPYPDSKAVAGTSRLWRAAVTPPAP
                     LVEYLSQHGRPISYGYLAEQYPLSDYQTVYARQPAGDEMASAEMASAGRPFTESLLVR
                     LMALGVAIAPIVLHAGVSSPELHEPPAPECFEVPESTARLVQSTRDAGKRVIAVGTTV
                     VRALETATAPNGCIRPVSGWTDLVLGPDHPARIVTGLVTGLHAPQASHLLLLEAVTGA
                     ELVRNAYGAALEHRYLWHEFGDSTLFLPN"
     gene            complement(3046..3771)
                     /locus_tag="VF788_10150"
     CDS             complement(3046..3771)
                     /locus_tag="VF788_10150"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8934531.1"
                     /translation="MKEKNGARTPRVALVTGGSRGLGRAFTDRLVRCGWHVVIDARDP
                     LRLAEMVAGLAIPHAVTAMPGDVADPAHRRKLANAVGDAGGLDLLVNNASVLGPSPQP
                     QLADYPLEVLEQVYAVNTLAPLALFQMLLPQLGRRGGRVINVSSDAAVEPYPGWGGYG
                     SAKAALDRLTAVLAVECPQLRIYSFDPGDMATDLHQQAFPGEDISDRPPPESVVPALV
                     ALAEGELPSGRYRATDLTAGLAR"
     gene            3826..4299
                     /gene="soxR"
                     /locus_tag="VF788_10155"
     CDS             3826..4299
                     /gene="soxR"
                     /locus_tag="VF788_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HEX8934532.1"
                     /translation="MDDTDLLTIGEIARRAGLATSALRYYERQGLVSATRTSGGQRRY
                     RRNMLRRLAFIRAAQNVGLSLQEIRTALDTLPAQRTPTTADWARLSRSWHSRLDEQIA
                     ALTALRDGLTSCIGCGCLSLRRCKLSNPNDDAAAYGAGARYLPPALRRSPDRNPS"
     gene            4448..5026
                     /locus_tag="VF788_10160"
     CDS             4448..5026
                     /locus_tag="VF788_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020670358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8934533.1"
                     /translation="MDRGRDVRLQLLSAAATLVAEIGWNAVSTRTLADRAGVTPGLVH
                     YHFPSLQGLLRDATLGMISDLLSSAEALFENAQTLDAGVDLIFSSFDASTGSETTSLL
                     FTETYLAATRDETLRSELVAIVGEFRQQLARWLAEHGADTSDVTASVLMAAIDGVILH
                     RALNPALTASAVTSLLRRLITPETGARLSMEQ"
     gene            complement(5136..>5887)
                     /locus_tag="VF788_10165"
     CDS             complement(5136..>5887)
                     /locus_tag="VF788_10165"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX8934534.1"
                     /translation="HGSGFLAVFVAGILIGDLRAPYKAEIERFHSSLASLAEIVAFTM
                     LGLTVSLTELAHGDAWLVGLALAVLLALVVRPVMVGLLLLAVRMSNSERLFVMWSGLK
                     GAVPILLGTYILSAGVPGSDRLYQIVVVVVAFSVAVQGGLVPTVAHRAGVPMQVLEPE
                     PWALGMRFRDEPTALRRYNVTAGAPADGRTIAELALGEDAWISMINRNGAHVPVRGRT
                     VLRAGDEVLLLTDPEIETDPQPLFTPPYREP"
BASE COUNT         1079 a         1987 c         1868 g          953 t
ORIGIN      
        1 aactgagtgc gatgcagttg cgcgtaacgc ccgtgggcgg cgagcagctc ctcgtgcgag
       61 ccgcgctcga ccaccaggcc gtcctcgatc acgaggatct ggtctgcggc ccggatggtg
      121 gacagccggt gcgcgatgac caacgcggtg cgtccgtgca gagcctcggc gagcgcagcc
      181 tgcacggctg cctcagactc cgaatccaga tgcgcggtgg cctcgtcgag gatcaccacc
      241 cttggctggg ccagcaggag ccgggcgatg gccagccgct gccgctcacc accggagagg
      301 cggtaaccac ggtcgcccac cacggtgtcc agcccgtcgg gcagcgattg caccagctcc
      361 tccagccgag ctcgccgcag cgaatcccac agttcctggt cgagggcctc cggcgccgcg
      421 aagcgcaaat tacccgcgat gctgtcgtga aataggtgcc cgtcctgggt caccacgccc
      481 accgtgtccc gcagtgctgc gaaggacagg tcgcggacgt ccaccccacc cagccgaacc
      541 gcccctgagt cgacgtcata gagccgaggc accagcgagg cgatcgtgga cttgccggca
      601 cccgaggagc caaccagcgc caccagttgc cccggttcgg cacggaaatt cactccgtgc
      661 agcacctcgg cgccaccccg cgcatccaac gtggcgacct cctccagaga ggccagcgat
      721 acctgttgtg ctgccgggta ggcgaagcgc acgttgtcga actccaccga tacctcgccc
      781 gggggcaccg ctatcgcgtc cggtcgctct gtgatcatcg ggcggacgtc gagcacttcg
      841 aaaacccgct cgaatgcgac cagcgcggtc atcacgtcga cccgggcgtt ggccagcgcg
      901 gtcagcggcg agtagagccg ggtaagtagc agcgccaggc tgaccacggt gcccgcggcg
      961 atgtcgccac gcagcgccag ccagccgccc agcccgtaca ccagcgcctg agccagcgcc
     1021 gacaccagcg tcaaggcagt gagaaaaacc cgcgccgaca tcgcgctgcg gacgccgatg
     1081 tcccgcacct gactggcccg gtggctgaat tcggcggcct cggcctccgg ccgtccgaag
     1141 agttttacca atgtggcacc cggagcggag aaccgctcgg tcatctgggt agtcatcgcc
     1201 gcgttgtgcg tggaggcctc ccgccgcagc tctgccatcc gggcgcctat cccccgcgcc
     1261 ggcaagacga agatcggaag caacaccaga gccagcacgg tgacctgcca ggacagggtc
     1321 agcatcacta ccaacgtcag caccagttgg atcgcgttgg tgaccacgcc ggatagcgtt
     1381 gaggtcagcg cggactgcgc cccgatgacg tcgttgttga gcctgctgac cagcgccccg
     1441 gtgcgggtgc gggtgaaaaa cgccaccggc atccgctgca cgtgctcgta caccgagcgg
     1501 cgcaggtcaa ggatcagccc ctcaccgagc cgggaggact gccagcgtgc ggccagcccg
     1561 attcccgcgt cgagcacggc cagcaacgcg atgagtacgg caagtccggc caccagagtg
     1621 acctccgcgt gcccgacgat gccatcgaca acccggccgg ccagcaccgg cgtggcgacg
     1681 gcgagcattg cagaaaccgt gctcaacgcc aggaagatca gcaacgaccg tcggtgtggc
     1741 ttggcgaagg tgatgattcg ccgcagagtg ccgggtgcaa gcgagcgcgg tgtgctgcgc
     1801 tggcgagcca tactgttcaa caggctccac gagttatcca tcaaagggcc tccgctgtcg
     1861 cgaaaatcta tcatccggct atgtgtaaca ctgtaatgac tatattattt cacgcacttt
     1921 tatggtccct tagctccttt cccttagtca ccttgggtca gttgggcagg aaaagggtgg
     1981 agtccccgaa ctcgtgccag agatagcggt gttcgagcgc ggcaccgtag gcgttcctga
     2041 cgagctctgc gccggtgacg gcttcgagta gcagtaagtg gctggcctgt ggcgcatgca
     2101 gcccagtgac gagcccggtc acgatccgcg ccggatgatc ggggccgagc accaggtcag
     2161 tccatccact caccggccgg atgcagccat tcggcgccgt cgcagtctcc agtgcgcgca
     2221 cgacggtggt gcctaccgcg atgactcgtt tcccggcatc gcgggtgctc tgcaccagcc
     2281 gagctgtgga ctcgggtacc tcgaagcact caggggcagg tggctcgtgc aactcagggc
     2341 tggagacccc cgcgtgcagc acgatcggcg cgatggcgac ccctaacgcc atcaggcgca
     2401 ccagtagcga ttcggtgaac ggacgcccgg cgctggccat ttcggcgctg gccatttcgt
     2461 cgccggctgg ctggcgcgca tacaccgtct gataatccga cagtgggtat tgctcagcga
     2521 ggtagccata actgatcggg cggccatgct gggagaggta ttccaccagc ggagccggcg
     2581 gcgtcaccgc agcccgccat aaccgacttg tgcctgcaac cgccttggaa tcgggatacg
     2641 gtgtggtgac ctggagatga acgccgccgg gaaggtgtat ccgttcgccg ggacaagtct
     2701 gcagatcggg cccgcgggcg tcgattcggc gaacttcgac cacccactcg gcccgcccca
     2761 ccgatgtgga gacatgcacc ggcacgggct gcccgtcgtc tcgacgtccg ggtacggcgg
     2821 ccggcagggt ggcggaggtg ttgaccacga tgaggtcgcc gggggcgagc agtaggggca
     2881 ggtcgaagaa gtgccggtgc tcgatctggc cgggtcgggc caccagcagc cgcacccggt
     2941 cccgttgcac cccgcgacgt tccggcgggc tggctgcctc gcttgccggc ggcaacgtga
     3001 actgggtggc gggcgtggct gtcccgggat gctctgcggc gatcgtcatc gggccagccc
     3061 tgctgtgagg tcggtcgccc ggtagcgtcc gctgggcagc tcaccctcgg ccagggccac
     3121 caatgcaggc acgacgctct ccggcggcgg ccggtcgctg atgtcctcgc ccgggaacgc
     3181 ctgctggtgc agatcggtgg ccatgtcgcc tgggtcgaac gaatatatcc gcagctgcgg
     3241 acactcgaca gccagcaccg cggtgagccg gtccagcgcg gccttggctg agccataacc
     3301 accccacccc ggatatggct ccacggcagc gtcggaggag acattaatca cccgtccacc
     3361 gcgtcgcccg agttgcggca agagcatctg gaacagggcg agtggtgcca aggtgttgac
     3421 cgcgtagacc tgctcgagca cctcaagcgg gtagtcggcg agctggggct gcggacttgg
     3481 accgagcacg ctggcgttgt tcaccagcag atccagcccc ccagcatcgc ccactgcatt
     3541 ggccagcttc ctgcggtggg cggggtcagc cacatcgccg ggcatcgccg tcaccgcgtg
     3601 cggtatcgcc aggccggcga ccatctccgc aagccggagt gggtcgcggg catcgatcac
     3661 cacatgccag ccacaacgca ccaggcggtc ggtgaacgcc cggcccagcc ctcgggagcc
     3721 gccggtcact aacgccaccc gaggtgtccg agctccgttc ttctccttca ttcctcgagc
     3781 atgtaacttc aacctgactt caagtcaagg atgcatcaaa gaacgatgga cgacacagac
     3841 ctgctgacga tcggtgagat tgcccggcgc gccggcctgg cgacctcagc gctgcgctac
     3901 tacgagcggc agggattggt gagcgccacc cgtacctcgg gagggcaacg ccggtatcga
     3961 cggaacatgc tgcgacggct ggccttcatc cgcgccgcgc agaacgtcgg actgtcactt
     4021 caggagattc ggacagcgct ggacaccttg cctgcccaac ggacacccac cacagcggac
     4081 tgggcccggc tctcccgctc ctggcatagc cggctcgacg agcagatcgc agctctcacc
     4141 gcactccggg acgggctcac ctcgtgtatc ggctgtggtt gcctgtcgct gcgccgctgc
     4201 aagctgtcca accccaacga cgacgcggcc gcctacggcg ctggtgcccg gtacctacca
     4261 cccgccctac gccgatcacc ggaccgcaat ccaagctagc gaccgagccc ccttgtcgtt
     4321 tcgccgcaac atcgtgagcg ctgttcactg gctgcctcag ggctctataa ttggtcaagt
     4381 gaccaaggcg attgcccaag gcggacgccc cagcaacgga gatgacccca tgtcaggcag
     4441 gacagcagtg gatcgtggtc gagacgttcg gctgcaactc ctgagcgccg cagccactct
     4501 cgtcgccgaa atcggctgga acgcggtcag tacccgaacc ttggctgacc gggcaggggt
     4561 gacaccgggt ctggttcact accacttccc gtcgttgcaa ggtttgctgc gagacgccac
     4621 cctcggcatg attagtgatc ttctgtcctc cgccgaggct ctcttcgaaa acgcccaaac
     4681 cctcgacgcc ggcgtagacc tgatattcag ttcattcgac gcctctaccg gcagcgagac
     4741 tacgtcattg ctgttcaccg agacttatct cgctgcaact cgtgatgaga cgctgcgcag
     4801 tgagctagtg gctatcgttg gagagtttcg gcagcagctg gcccggtggc tcgcggaaca
     4861 cggtgctgac acatctgacg tgaccgcctc ggtgctgatg gcggctatcg acggcgtgat
     4921 tctgcaccgc gcgctgaatc cagcactgac cgcatccgcg gtcacttccc tgctgcgacg
     4981 gcttattacc ccggaaacag gggctcggct cagtatggaa cagtaggact tgtcggttct
     5041 ggtaagcgcc gaatggaata tcttcatgcc gttctcctac cactgcacgt cattccagga
     5101 aaagcgggca atcgattgaa attttctctg cactactaag gctcccggta gggcggagtg
     5161 aacagaggtt gtgggtcagt ctcgatttcc gggtcggtca acaacagcac ctcatcaccg
     5221 gcccgcagga cggtgcggcc gcggacgggt acgtgggcac cgttacggtt gatcatgctg
     5281 atccaggcgt cttcgcccaa ggcgagctct gcgatagtgc gaccgtctgc gggagcgccg
     5341 gctgtgacgt tgtagcgacg cagggcggtg ggctcgtcgc ggaaacgcat gcccagcgcc
     5401 cagggttcgg gttccaagac ctgcatgggc actccggcgc ggtgagccac cgtgggcacc
     5461 agtccgccct gtacagcgac cgagaacgcc accacgacca ccacgatctg atagagccgg
     5521 tcagagccgg gcactccagc ggacaggatg taggtgccca gcaggatcgg caccgcgccc
     5581 ttaagcccgg accacatcac gaacagccgt tcactgttac tcatcctcac ggccagtagc
     5641 aagagcccga ccatgacggg gcgaaccacc agcgccagca gcacagccaa cgccagtccc
     5701 accagccagg cgtcaccgtg agccaactcg gtcaatgaca cggtcagccc cagcatcgtg
     5761 aatgcgacga tctcggccaa gctggccagc gacgaatgga accgttcgat ctcggccttg
     5821 tacggggcac ggagatctcc gatgagaatc ccggcgacga acacggccag aaaccctgaa
     5881 ccgtgcg
//
LOCUS       DASVXZ010000489         1565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_680023, whole genome shotgun sequence.
ACCESSION   DASVXZ010000489 DASVXZ010000000
VERSION     DASVXZ010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680023"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..600
                     /locus_tag="VF788_10170"
     CDS             <1..600
                     /locus_tag="VF788_10170"
                     /inference="COORDINATES: protein motif:HMM:NF019886.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEX8934535.1"
                     /translation="SLAMLVLLESLSPEQRAVLLLHDMFDYGYPEIAAIVGKSEDNVR
                     QLATRARRHVEQRRPRFQTTREQRDELARRFFAAAEQGDLAGLEALLAHDVELTGDGG
                     GKAPALARSLRGRNRVARTLINWIRLAARLPGASLRPVEVNGGPGALFLDGQQRLISV
                     LALDIAGGQITSISSVVNPDKLTHLGPVADFGSLLRSAR"
     gene            747..>1565
                     /locus_tag="VF788_10175"
     CDS             747..>1565
                     /locus_tag="VF788_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8934536.1"
                     /translation="MDSVTEVLVVGAGPTGLMLAGDLARAGVDCTVLERRAEESNLTR
                     AFAVHARTLEMLDARGLADDLVATGARVGTLRVFGKLEVDLSQLPTRFPYVLVTPQYN
                     TERVLEEHASALGAKIVRGAEVVGLRQDNDGVELDVRYQDGTLGTQRTMYAVGADGVR
                     STVRQALALPFPGHSAVQSVMLADVRLSEAPEEVLTVNAAGDGFSFLAPFGDGWYRVI
                     AWDRRRQLPDDAPVELEEVRDITQRVLGTDFGMHDARWMSRFHSDERQVPHYRVG"
BASE COUNT          252 a          513 c          530 g          270 t
ORIGIN      
        1 tcgctggcga tgctggtgtt gctggagagc ctctcgcctg agcagcgagc cgtgctgctg
       61 cttcacgata tgttcgacta cgggtacccg gagatcgcgg cgatcgtcgg caagagcgag
      121 gacaacgtgc gccagctcgc cacccgcgcc agacgccacg tcgagcagcg ccggccccgc
      181 ttccaaacga cacgcgagca gcgcgacgag ctggcacgac ggttcttcgc ggccgccgag
      241 caaggcgatc tcgctgggct cgaggcgcta ctcgcacacg acgtggagct gaccggcgac
      301 ggcggcggca aggctccggc gctcgcgcgg tcgctgcgcg ggcgcaaccg tgtcgcgcgc
      361 acgctcatca actggatccg cctggccgcg cgtcttccgg gcgcgtcgtt gcgccccgtc
      421 gaggtcaacg gcggcccggg agcgctcttt ctcgacggac agcagcggct gatcagcgtg
      481 ttggcgctcg atatcgccgg cggtcagatc acaagcatca gctccgtcgt caacccagac
      541 aagctgacgc acctcgggcc agtcgccgac ttcggatcgc tactgcggtc tgcgagatga
      601 ctggttccgc ggcctcgccg acaagaacat ccgacgtgcc agcctcccca gcgtccgtcc
      661 tgaatcggat gtcctttgct aggcgcaatc caggtaacct ggtccccgta gcgtgttttg
      721 tggtcagccg cgaacgctga ggtttgatgg attcggtcac cgaggtgctt gttgtggggg
      781 cgggtccgac cggcttgatg ctggccggcg accttgccag agccggcgtc gactgcaccg
      841 tactggagcg ccgcgccgag gaatctaacc tcacccgcgc gttcgccgtg catgcccgaa
      901 cgctggagat gctcgacgca cggggcctcg ccgatgacct agtggccacc ggcgcccggg
      961 ttggtacact acgggtgttc ggcaaactcg aggtagacct ctcccagctg cccacccgat
     1021 ttccgtatgt gctggtgacc ccgcagtaca acaccgaacg ggtgctcgag gagcatgcca
     1081 gtgcgctagg ggcgaagatc gttcgtggtg ctgaagtggt cggtctgcgc caggacaacg
     1141 atggtgtcga gctggacgtg agatatcagg acggaacctt gggcacgcag cggacaatgt
     1201 acgccgtcgg tgccgatgga gtacgcagca cggtacgcca agccctcgcg ctgccgttcc
     1261 ctggtcactc tgccgtgcag tcggtgatgc tggccgacgt gcgactcagc gaggcgccgg
     1321 aggaagtgct gaccgtcaac gcggccggtg acggcttttc gttccttgcc ccgttcggcg
     1381 acgggtggta tcgggtcatc gcctgggacc ggcgccggca gctgccagac gacgcgccgg
     1441 tcgagctgga ggaggtccgc gatatcaccc agcgcgtgct gggcaccgac ttcggtatgc
     1501 acgacgcccg ctggatgtcc cgattccaca gtgacgagcg ccaagttcca cactatcggg
     1561 tcggg
//
LOCUS       DASVXZ010000490         1765 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1102134, whole genome shotgun sequence.
ACCESSION   DASVXZ010000490 DASVXZ010000000
VERSION     DASVXZ010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102134"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..628)
                     /locus_tag="VF788_10180"
     CDS             complement(<1..628)
                     /locus_tag="VF788_10180"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEX8934537.1"
                     /translation="MEMVKADKDRLVVSIEAATNQLCAVLRSASDPDVRAVGTWTVRD
                     VGAHLASGVPLYTGIVRGEGSTYTCLDRIAELNAAGITAITNRDRETLADQIESAVAE
                     FVTAVRTTPGDPKVAYHAGILLPVSSVTAILLGEMLIHGYDIAKASGRPWVIPPEHAG
                     LVLRGALPILPYFVDRAAAAGVRASFDIRLRGKDGPRVQLAFDDGSVHV"
     gene            complement(1137..1421)
                     /locus_tag="VF788_10185"
     CDS             complement(1137..1421)
                     /locus_tag="VF788_10185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934538.1"
                     /translation="MTQPQDTDLIEENYTHGPVDLTLIVNLANRQATLKVKIFGEATA
                     TATVQEGRPIDKVISDKLPEDVVTLRLEAHKVRITGTLQGQPVAHEVELH"
BASE COUNT          327 a          566 c          542 g          330 t
ORIGIN      
        1 cgacgtgaac ggagccgtca tcgaaggcca actgcacccg cggaccatcc ttgccgcgca
       61 aacggatgtc gaaactggca cgcaccccgg cagcagccgc ccgatccacg aagtacggaa
      121 gtattggcag cgcaccgcga aggacaaggc ccgcatgttc gggggggatc acccatgggc
      181 gcccagacgc cttggcgatg tcgtagccgt ggatcaacat ctcgccaaga aggatggcgg
      241 tgaccgaaga cactggcagc aagatcccgg cgtggtaggc aaccttgggg tcaccgggtg
      301 tggttcgcac cgcagtgacg aactcggcga cagcggactc gatctgatct gccagcgtct
      361 cgcggtctcg gttggtgatc gcagttatcc ccgcggcatt gagctccgcg atccggtcta
      421 ggcacgtgta cgttgagccc tcgccccgga cgattcccgt gtaaagcggc actccgctgg
      481 ccagatgcgc gccgacgtct cgcacggtcc atgttcccac cgcccgcacg tccggatccg
      541 acgcggatct cagtactgca cagagttgat tggtggcagc ttcgatggag acgacaagtc
      601 ggtccttgtc ggctttgacc atctccatgg tgatcacctc gctggctcaa gtactcatcg
      661 tcgctataag gagcagcgaa gactagctac cgatacacgc gcgtgcgagg ctgacagcac
      721 ggtatcgatc agcagcctcc ggtatcttgc tgcttcgacc ccgttgtcga gtgccgtcac
      781 tggcacggtg gctgggcgcg gcaaccagct cggcggcctc ccggtcttga cccgcggacc
      841 ggtgtccgta gacctggaag gtcaccctgc ggtctaaatg gccgatgcgg tcgctgagga
      901 tcttcggtgt aataccgcta tccagcgaca gcgtggcgta cgtgtgccgg atgtcgtgca
      961 gtctgatacg gcgcactccg gccatcgcgt atccgcgatc gtcaacgtcc gtcatcgagt
     1021 tcgagcaagc cccggtcgac gctggccagc tctgaccgcc gcatccccgt tgtcgcgcga
     1081 gcagccgcca agcggcgaag cgatcggaaa gtgccacagc tggattcagg ctagcctcaa
     1141 tgtaattcga cttcgtgggc aacgggttgg ccttggagcg tcccagtgat tctcacctta
     1201 tgcgcttcaa gccggagggt cacgacatcc tcggggagtt tgtcgctgat gactttgtcg
     1261 atggggcgcc cttcctgcac cgtagccgta gccgtggcct ctccgaatat tttgaccttg
     1321 agtgtagctt gacgattggc tagattaacg atgagtgtga gatccaccgg tccatgggtg
     1381 tagttctcct cgatgaggtc ggtatcctga ggctgagtca cttttctccc catgtcatgg
     1441 gtccggaccc cgggagccca acacaacact gaggtcggcc aggaagccca ggttgttcat
     1501 ggtgaagtcg ttggatcacg gccacaattg ttgggcgccg ccgcgttggc accagccagt
     1561 agcgggtcgc agagtcccca ccacctagca gccgggcagc aaccaccccc acacgacggg
     1621 acacggcccc ccctcacatc cgaagattct tcaaggcagg gacaccacgt gcacactacg
     1681 acacacggtc cacccgggcc ttacaagcgc gcggccgcgg cggtctgccc tgcaccgcgg
     1741 cccgcccggc gggcgcggtg gtcaa
//
LOCUS       DASVXZ010000491         1928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_860320, whole genome shotgun sequence.
ACCESSION   DASVXZ010000491 DASVXZ010000000
VERSION     DASVXZ010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_860320"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VF788_10190"
     CDS             <1..187
                     /locus_tag="VF788_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX8934539.1"
                     /translation="SNILFLLATRTGTLGVSAVLVSLYPVVVVILARLVLHERLTLLQ
                     ATSVTCALTASALLSSG"
     gene            complement(1110..>1928)
                     /locus_tag="VF788_10195"
     CDS             complement(1110..>1928)
                     /locus_tag="VF788_10195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HEX8934540.1"
                     /translation="AGTAVWAFLLLDRAPSWQPWLRVVVLIAGLVCAVVLAAPATARS
                     RVGLVVVAAGVVLGLAAPSAYALDTAATPHHGAIPSVGPPSAGSQGGGFGGGGPRGFP
                     GRRFSAQRVPGHGFGSNGFAGPGNPTGGLPPLGSSAGGFRGGRNGGPGGIGGLLGGTP
                     SSTALNALLARDADRYTWVAAAVGSNLAAGFQLATGYPVMPVGGFNGSDPSPTLAQFQ
                     QYVAQGTIHYFIGSGGFPGQHGGSSSSRQIADWVQQNFTATTVGGATVYDLAVR"
BASE COUNT          374 a          641 c          596 g          317 t
ORIGIN      
        1 gtcgaacatc ctgttcttgc tggcgacccg gacgggcacg ctgggtgtca gcgccgtact
       61 cgtctcgctc tacccggtgg tggtcgtcat ccttgcccgg ttggtgctcc acgagcggct
      121 gaccctgctg caagcgacca gcgtgacctg tgccctcacc gccagcgcgc tgctgtcatc
      181 aggctgaagg gctgaccatc tgcatcaatt acaaaatgcg agacggaggt cctcaagggc
      241 tatcggcgcc gaccgaccgg gctgaccgtc ggtgagaatt catctgatgt caatgcgttc
      301 gccgcctttt cttttcttcg acggtcccat ccggctttcc acatcagacc cgtgatgcct
      361 agcaccatgc aggtcaaccc gatgacaagc aggataattg cgagcgtcag cgtttggact
      421 ataggcccca cttggtatcc tctcgtgttc tcgagatgtg agttggacga cacggacagg
      481 ccacggatgg ggcgcgcctc acacaactcc cacaggacca gcagacttac cgccatagct
      541 gggtagcgga cctccggtcg cgatccagac gtctcgatca ttgcccgtag tcactgtatc
      601 ccgagcggtc gggttctcgc cactcgttcg agtgaagaag tcatggctca gggctacact
      661 gagtcgaagt atctcatgcc gtaaccggtc cgtcaggtgc tggacctatc gcattcaccc
      721 aagaggcaca gcctgacccg gcgcgcggaa tgcgggcgga agacgttatg caggagtgtc
      781 gaggatcaga aaggtacacc tcggggagat accgccaggg ctgtcgcggc gactaacagt
      841 aagacgccct cgacgacgag gctgagaagg gcaagttgtt cggcccagtt tccgatgtcg
      901 ttgaatgtat tcaggacctt tcgatccagg caaaccgccc tggtcgatga cgtgaatgac
      961 agccacggcc agacacccca cgataccaat cccacgcggg accaggctgg tcctggtcaa
     1021 ccagcccggg gcggcggttg atgacaacat ctccatgccg atcctctttc gtgacagtgc
     1081 gcacctgatg aggaggaaag ccggtcagtt cagcgcaccg cgaggtcata gaccgtggcc
     1141 ccgccgaccg tcgtcgcggt gaagttctgc tgcacccagt ccgcgatctg ccggctgctg
     1201 gaactgccgc cgtgctggcc gggaaagcct ccgctaccaa tgaagtaatg gatcgtgccc
     1261 tgcgccacgt actgctggaa ctgggccagt gtcggcgacg ggtcactgcc gttgaagccg
     1321 ccgaccggca tcaccgggta cccggtggcg agttgaaaac cggccgccag gttcgagccg
     1381 acggcagcgg ccacccaggt gtagcgatcg gcgtcgcgag ccagcaacgc gttgagtgcg
     1441 gtactggacg gggtaccgcc caatagaccg ccgatcccgc ctggcccacc atttcgcccg
     1501 ccgcggaaac cacctgcgga gctgccgaga gggggcaggc caccggtcgg attgccgggg
     1561 cccgcgaacc cattactgcc gaacccatgg cccgggactc tctgagcgga gaacctccgg
     1621 cccgggaatc cacggggtcc acccccaccg aaaccgccac cctgtgatcc ggcggagggg
     1681 ggtccgacgg aggggatcgc cccgtggtgg ggcgttgccg cggtgtcgag ggcgtaagcc
     1741 gacggcgcag cgagcccgag tacaaccccg gcagcaacaa ccacgagccc aaccctgctc
     1801 cgggcagtcg ccggcgccgc cagcacgacc gcacacacca gacccgcgat cagcacgacc
     1861 acccgcagcc aaggctgcca gctcggcgcc cgatcaagca gcaggaacgc ccataccgcg
     1921 gtaccggc
//
LOCUS       DASVXZ010000492         1875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1370729, whole genome shotgun sequence.
ACCESSION   DASVXZ010000492 DASVXZ010000000
VERSION     DASVXZ010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370729"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VF788_10200"
     CDS             <1..351
                     /locus_tag="VF788_10200"
                     /inference="COORDINATES: protein motif:HMM:NF013890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934541.1"
                     /translation="PDYLYTFGSPRVGDGDFASGMQGVSHSRYVDCCDLVAKAPPPTL
                     FGYEYEHTGLLHYVDRDGTVMTSPPEQIIYDDQREASSAYDQYAVFKGYVPVRALADH
                     APINYVSAVMGSRA"
     gene            374..1285
                     /locus_tag="VF788_10205"
     CDS             374..1285
                     /locus_tag="VF788_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HEX8934542.1"
                     /translation="MRFDEGSELDTSQVDDQRGGGMGGRVAAGGGVGIVGLLIYFLLT
                     QLSGGPGSPLPSGLPGLGEGQSANDTQISESCRTGQDANTKLDCEVVAVVNSLDSYWA
                     KAFASAGSRTYVKPRIEFFNGGVRTGCGSASSDAGPFYCPADRESYIDLRFFQELEQR
                     FGAKGGPFARAYVIAHEYGHHVQSLLGTSRKVQPGETGPTSGSVRLELQADCYAGVWA
                     KNASTTPGSSGRPLITNVTDEDVGAALDTASRIGDDYIQTNLGGGQVNESQFTHGTSQ
                     QRQKWYRTGYETGSPTSCDTFDTRDLG"
     gene            complement(1320..>1875)
                     /locus_tag="VF788_10210"
     CDS             complement(1320..>1875)
                     /locus_tag="VF788_10210"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEX8934543.1"
                     /translation="DECRHSVMFSRAAEKFGGPDYSPGWLVHQLGRLLKTTSNGTLTF
                     GGAIYVEEILDALQREQMVDESLQPMVQKVSWIHVVEEARHIRYAREEARRQWPRLGP
                     LGRAYSRFVLALVVYFSTTRLIDPKVYAAVGLDVDEAVAAAAANPHWRQTKQFAARKV
                     VEFFNEVGLIAGPGKLLWRRAGIL"
BASE COUNT          343 a          610 c          609 g          313 t
ORIGIN      
        1 cctgattatc tgtatacatt cgggtcgccg cgtgtcggtg acggggattt cgcctccggc
       61 atgcagggtg tcagtcactc acgctacgtc gactgctgtg acttggtcgc caaagctcca
      121 ccgccgacgt tgttcggata cgaatacgag cacaccggtc tcctgcacta cgtcgatcgg
      181 gacggaacgg ttatgacttc gccgccggaa caaataatct acgatgatca acgcgaggct
      241 tcgtcagcat atgaccagta cgcggtgttt aagggttacg tgccggtgcg ggcactggcg
      301 gaccatgcgc ccatcaacta tgtctccgcg gtgatgggtt cgcgagcctg agtactcgag
      361 cgtagggggc agcatgcggt tcgatgaggg atccgagctt gacacgtccc aggtcgacga
      421 ccagcgcggt ggcggcatgg gcggccgggt ggcggcgggc ggtggtgtcg gaatcgtcgg
      481 tctgctgatt tactttctgt tgacccagct gagcggaggc ccaggcagcc cgctgcccag
      541 cggcctgcct gggctcggcg aggggcaaag cgcgaacgac acccagatca gcgagagctg
      601 ccggaccggc caggacgcga acacgaagct cgactgcgag gtcgtcgcag tcgtcaactc
      661 cctcgactcc tactgggcca aagccttcgc cagtgccggc agccgaacct atgtcaagcc
      721 caggattgaa ttcttcaacg gcggggtgag gaccggctgc ggcagcgcaa gctcggacgc
      781 cggcccgttc tactgtcccg ccgaccgcga gagctacatc gacctgcgtt tcttccaaga
      841 gctcgagcag cgtttcggtg cgaagggcgg cccgttcgct cgggcctacg tcatcgcaca
      901 cgagtacggc catcatgtgc agagcctgct gggcacatcg cggaaggtcc agccgggcga
      961 gaccgggccc acctccggct cagtccggct ggagctgcaa gctgactgtt acgccggagt
     1021 ctgggcgaag aatgcgagca cgaccccggg ctcctccggg cgaccgctga tcaccaacgt
     1081 gaccgacgag gacgtcggcg cggcgctgga caccgcttcg cgcatcggcg atgactacat
     1141 ccagaccaac ctcggcggcg gtcaagtcaa cgagagccag ttcacccacg gcacctccca
     1201 gcaacgccag aagtggtacc gcaccgggta cgaaaccggg agcccaacga gctgcgatac
     1261 cttcgacacc cgcgatctcg gctgagttcc ggctgcggtc agagcgcgac cgtcacgatc
     1321 tacaggattc ccgccctgcg ccagaggagt tttcctgggc cggcgatgag cccgacctcg
     1381 ttgaagaact cgacgacctt gcgtgcggcg aattgcttgg tctgccgcca gtgcgggttg
     1441 gccgcggccg ccgcgacggc ctcgtcgacg tccaatccga ccgccgcgta caccttgggg
     1501 tcgatcagcc tggtagtaga gaagtagacc accaaggcaa ggacgaagcg gctgtacgcc
     1561 cggcccagcg gacccagccg aggccactgc cgacgggcct cctcgcgggc gtagcggatg
     1621 tggcgggctt cctcgacgac gtggatccac gacaccttct ggaccatcgg ctgcagcgac
     1681 tcgtccacca tctgctcgcg ctgcagcgcg tcaaggatct cctcgacgta gatcgcgccg
     1741 ccgaaggtca gggtgccgtt ggaggtggtc ttgagcaacc gtccgagctg gtgcaccaac
     1801 caaccgggac tgtagtcggg gccgccgaac ttctccgcgg cccgggagaa catcaccgag
     1861 tgccggcact catcg
//
LOCUS       DASVXZ010000493         2862 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_322166, whole genome shotgun sequence.
ACCESSION   DASVXZ010000493 DASVXZ010000000
VERSION     DASVXZ010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322166"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VF788_10215"
     CDS             <1..544
                     /locus_tag="VF788_10215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8934544.1"
                     /translation="RVMSAVPGVARIDCVAHGDELLARYSRQPVDVVLVGTQRAVPAG
                     VEATRRLVSAHPQANVIVFGAPDDAGSIAAAIAGGARGYLRWDASRPELVAALAHTLA
                     STSVPAPRPPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRK
                     LGVRDRAQAVAHGFRRGLVA"
     gene            798..1370
                     /locus_tag="VF788_10220"
     CDS             798..1370
                     /locus_tag="VF788_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016696884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8934545.1"
                     /translation="MTAVGDDLDVLIGDAVDGRQEAVEGVLRRIRPLVVRYCRSRVGS
                     QEKTSASADDVAQEVCLAVLTALPSYRDQGRPFLAFVYGIAAHKVADAHRSAARNRAE
                     PVAEVPDTQDLADGPEAQVMQGEFAGRMAQLLDTLPEKQREILRLRIILGLSAEETAE
                     AVGSTPGAVRVAQHRALGRLRGVLASEGVV"
     gene            1428..2489
                     /locus_tag="VF788_10225"
     CDS             1428..2489
                     /locus_tag="VF788_10225"
                     /inference="COORDINATES: protein motif:HMM:NF028061.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-D factor RsdA"
                     /protein_id="HEX8934546.1"
                     /translation="MPADLAAVQADDALLDMIGAGHTPSDADDELTRVLAAWRREVNA
                     APIPELVDTSAALATIRAAARQPARRRNPVFGSAAAAAAVFVIAFSAVGMVAKSAQPG
                     DHLWGVTQVLYSDYARSVETAAAVRTELNEANTALKQNNPERARAALQRVQQQLPVIG
                     EAEGHTDLTARHRQLEQRLLTGSPDMGSLSGDPAFPSSVPSGPQPKASEVRQSDGPAP
                     DDSATTPESAKDLPPGTPTTNSRQFMPDRGYPQGPYPSPGAYPGRGGTSTPGGAQDRG
                     IPRHAGRSEGNSPGDGSTTGDNTTADDTGGGAPSPPHSRDGGQVSGGNPGDVGGPHPP
                     GNSFGRVCAHPSPRPPYCG"
     gene            complement(2496..>2862)
                     /locus_tag="VF788_10230"
     CDS             complement(2496..>2862)
                     /locus_tag="VF788_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016696882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5319 domain-containing protein"
                     /protein_id="HEX8934547.1"
                     /translation="PFAGDPEDPALALEALDDSDDGVEEPLDDEERAGLLADLSDLAV
                     YQALLAPRGVRGIVVDCPDCAEQHYHDWHLLRASLQQLLEVGRMRPHEPAYDPDPAGY
                     VTWEYCRGYTDAVHAENGG"
BASE COUNT          468 a          951 c          965 g          478 t
ORIGIN      
        1 tcgtgtgatg tccgcggtcc ccggcgtcgc ccggatcgac tgcgtagcac acggtgacga
       61 gctcttagcc cgctattccc ggcagccggt ggatgtcgtc ctggtcggaa cgcagcgtgc
      121 ggtgccggct ggcgtggaag ctacccgtcg gctggtgtcg gcccatccgc aagccaacgt
      181 gatcgtcttt ggtgcaccgg acgacgcggg cagcatcgcc gccgcgatcg cgggtggtgc
      241 acgaggttac ctccgatggg acgcgtcgcg tccggagctc gtcgcggcgc ttgcgcacac
      301 gctggcgagc acgtcggtac cggctccgcg ccccccctct gaccctggtg tacagctcac
      361 tgagcgggag ctgcaggtcc tccgcggaat gagtcagggt aagagcaacg gtcaaatcgg
      421 tcgggagctg tatctctccg aggacaccgt gaaaacccac gctcgcagac tcttccgcaa
      481 gctcggcgtc cgggatcgag ctcaagctgt cgcccacggt ttccggcgcg gactggtggc
      541 ctgaggctgc gcccggacaa ggttccgcac aagaccggtg gcatcgccaa ccggtcttgt
      601 gggcgttttt gtgactacct tcctggtagc tgcggggcga caccgggtga tctgcccggt
      661 ctgtcaacca ctacggtcca ctgcgaggtg gccaggtctc ggtatggtgc tagacggttg
      721 ggaccacgga gtggccaccg ccggtcggcg ttcagcccgg tcggtccctc gtcgtaacgg
      781 cagggctgca ttctgcgatg accgctgtag gggacgacct cgacgtcctg atcggtgacg
      841 ccgtcgacgg caggcaagaa gccgtcgaag gtgtgctccg gcggattcgt cccctcgtgg
      901 tgcggtattg ccgttcccgc gtcggtagcc aggagaagac gtccgcctcg gcggatgatg
      961 tagctcagga ggtgtgtctc gcggtgctca cggccctgcc cagttaccgc gaccaaggcc
     1021 ggcctttcct tgccttcgtg tatggcatcg ccgcgcacaa ggttgccgac gcccaccggt
     1081 cggcagcgcg taatcgagct gagccggtcg cggaggttcc cgatactcag gacttggccg
     1141 acggtccgga ggcacaggtg atgcagggcg agttcgccgg tcggatggcc cagttactgg
     1201 acaccctgcc ggagaagcag cgcgagatcc tgcgcctgcg gatcatcttg gggctctccg
     1261 cggaggagac cgctgaggca gtgggttcaa ctcctggtgc ggtccgggtg gcccagcacc
     1321 gggctctagg tcggttgcgc ggagtactgg cgtcggaggg ggtggtctga gtgcctggtt
     1381 gggacgagca tccaagcgct gggtacccca atgaggatgg gcacgatatg ccggctgatc
     1441 tggccgcggt tcaggccgat gacgcgctac tggacatgat cggagctggc cacacaccca
     1501 gcgacgcaga cgacgaactg acgcgagtct tggcagcatg gcgccgcgag gtgaatgcgg
     1561 cgccgatccc ggagttggtg gacaccagcg ccgcgttggc gacgatccgc gctgccgctc
     1621 gccagccagc ccgtcgccgc aatcccgtat tcggctcggc tgcggcagct gcggcagtgt
     1681 tcgtgatcgc gttctccgca gtgggcatgg tcgccaaatc ggcgcaaccg ggtgaccacc
     1741 tgtggggggt gacccaggtc ctctacagcg actacgcccg ctcggtcgaa acggcggcag
     1801 cggtccggac ggagctcaac gaggcgaaca ccgccttgaa acagaacaat cccgaacgtg
     1861 ccagggcagc actgcaacgc gtccagcagc agttaccggt gatcggcgaa gccgagggcc
     1921 acaccgatct gaccgcccgc caccgccagc ttgagcagcg attgctgacc gggtcgccgg
     1981 acatggggag cctctccggt gacccggcgt tcccctcgtc ggtgccctca gggcctcaac
     2041 ccaaggcgag cgaggtacgt caatcggacg gaccggcacc cgacgactcc gccacaacgc
     2101 ctgagtcagc taaggacttg ccccccggca cgcccacaac caattcccgt caattcatgc
     2161 ccgatcgcgg ctacccgcag ggcccttacc cgtcccctgg cgcttacccg ggcaggggtg
     2221 ggacgtccac tcctggcggc gcacaggacc gtggcattcc cagacacgct ggtcgctcag
     2281 aaggaaacag cccgggtgat ggcagcacca ccggtgataa caccactgcg gatgacaccg
     2341 gtggaggcgc cccctcgcca ccccattcgc gcgacggcgg ccaggtcagt ggtggaaacc
     2401 cgggcgacgt gggtggtcct caccctccag gaaacagctt cggccgggtt tgtgctcacc
     2461 cgtcgccgcg acctccctat tgtggctgag gcggctcagc ccccgttttc ggcgtgcacc
     2521 gcgtcggtat agccacggca gtattcccag gtcacatacc ctgcgggatc cgggtcgtag
     2581 gcgggttcgt gcgggcgcat tcgaccgacc tccagtaact gctgcaagct ggcccggagc
     2641 agatgccaat cgtggtagtg ctgctcggcg cagtcagggc agtccacaac gatcccccgt
     2701 actccgcgag gcgccagcag ggcctggtag acggcgagat cgctcaagtc ggcgagcagc
     2761 ccggctcgct cctcgtcgtc gaggggctcc tcgacgccat cgtcggaatc gtccaacgcc
     2821 tcgagcgcca gagccggatc ttccgggtca ccagcgaacg ga
//
LOCUS       DASVXZ010000494         2183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_501425, whole genome shotgun sequence.
ACCESSION   DASVXZ010000494 DASVXZ010000000
VERSION     DASVXZ010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501425"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VF788_10235"
     CDS             complement(<1..406)
                     /locus_tag="VF788_10235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934548.1"
                     /translation="MAGPDDPVRVDRLLPRQLRIHRIVTPATLLCWHRRLVTQRGTCP
                     HRSGRPPITGESRTLVRRLAQENPSGGPRRIHGDLAGLGYRLGTGTIRRILAAARLGP
                     APRRADTGWRTFLRTQATGLLATDFFTLDTIGL"
     gene            complement(804..>2183)
                     /locus_tag="VF788_10240"
     CDS             complement(804..>2183)
                     /locus_tag="VF788_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-associated domain-containing protein"
                     /protein_id="HEX8934549.1"
                     /translation="GVPSLADIAEGTGVNAGDTGSLGAVGEHRTRLTEPEAQLNLRTV
                     LELCAAGELRCSEKTHRPSAATVYTVGSHLAHGDFYRDEPIASFAWPLLVQAGGLAKI
                     EGGRLKLTVKGRTALRKPAAEVIRQLWQRWLTHALIDEFSRIEEIKGQRARNVLTSAK
                     TRRQMVAAALASCPADEWISVTALFATMRRGNMSPTIARNEMALWKLYLVDAHYGSLG
                     YDGFHRWEILEGRYTLAVLFEYAGTLGLLDLDYVHPTGAREDFQDNWGGDDLDALSRY
                     DGLRAIRLTALGRYALGLTDTYQRPTGDNNTQGLKVLPNLDVVATGALSSGDQLVLSG
                     YAEHTADRVWTISAASLLRAINTGRDPTDFASFLAQHTDHELPDALETLISDITRRCA
                     QLTDLGHARVIECADRALAALITHNRALRALCHPIGERHLAVPLDQELKFRTALLKLG
                     YAFPGQPTS"
BASE COUNT          348 a          692 c          772 g          371 t
ORIGIN      
        1 gcagcccgat ggtgtcgagg gtgaaaaagt cggtggccaa aagccccgtg gcctgagtgc
       61 gcaggaaggt ccgccacccg gtgtctgctc ggcgtggtgc cgggccgagc cgagcagcgg
      121 ccaagatccg tcggatggtg ccggtgccca ggcggtatcc gagtccggca aggtcgccgt
      181 ggatccggcg agggcccccc gaagggtttt cctgggccag gcgtcgtacc agcgtgcgac
      241 tctcgccggt gatcggtggg cggcctgacc ggtgcgggca ggtccctcgt tgggtgacca
      301 ggcggcgatg ccagcacagc agcgtggcag gggtcacgat ccgatggata cgcagctggc
      361 gcgggagcag ccggtcaacg cggacaggat cgtccggtcc ggccacgtca ggccaggcct
      421 ggtgacctgg cggcgcagca ctgcgacttc gtggcccagg atgaggatct cgacgtcgtt
      481 ggctgcccgg ctgcgggcaa gcaatccaaa tcagccaaac agcctgaccg tgatgagata
      541 cagcagtcgg aacaccacgg ccgatgatca tgccatgcgc acacagggtc gccgaaaccg
      601 cacgtcgcct cacctgtgat gagttttggc acgccacacg catcctgcgc ccgtatccgg
      661 gaaagaccac cgccgaggtc tacgattatc acgacatcga cacccgcgtc ctggcctcgt
      721 ccctggccaa gcgtgcgccg ggctatctca gcctcggctt ccctgcccct cgcgcatcgg
      781 cgtcacggcg gtgattgact cgctcaggac gtgggctgtc ctgggaacgc gtagccaagt
      841 ttcagcaacg ccgtgcggaa cttcagttcc tggtcgagcg ggacggccag atgccgttcg
      901 ccaatcggat ggcacagggc acgaagagcg cgattgtggg tgatgagcgc ggctagcgcg
      961 cggtcggcgc attcgatcac gcgggcgtgt ccgaggtcag tgagttgcgc gcagcggcgg
     1021 gtgatatcgc tgatgagggt ctccagcgcg tcgggtagct cgtgatcggt gtgctgagcc
     1081 aggaagctgg cgaagtccgt ggggtcgcgt ccggtgttga tcgccctcag caggctcgct
     1141 gcggagatgg tccagacccg gtccgcggtg tgctcggcgt agccggacag cacaagctga
     1201 tcaccactgg agagggcacc ggtggcgacg acgtcgagat tgggcaggac cttcaatccc
     1261 tgggtgttgt tgtcgccggt gggccgctgg taggtgtcag tcaggccgag ggcgtagcgg
     1321 ccaagcgcgg tgagccggat cgcccgcagg ccgtcgtagc ggctcagcgc gtccagatcg
     1381 tctccgcccc agttgtcctg gaagtcctct cgtgcgccgg tggggtggac gtaatcgagg
     1441 tcgagcagtc ccagcgtgcc ggcgtattcg aacagcaccg ccagggtgta gcggccttcg
     1501 aggatctccc accggtgaaa gccgtcatag ccgaggctgc cgtaatgagc atcgacgagg
     1561 tagagcttcc acagcgccat ctcgttgcgg gcgatcgtgg ggctcatgtt gcctcgtcgc
     1621 atggtggcga acagggcggt tacgctgatc cactcgtcgg ctgggcagct cgccagggcg
     1681 gcggcgacca tctgacggcg ggtcttggcc gaggtgagca cgttgcgagc gcgctggccc
     1741 ttgatctcct cgatccggct gaactcgtcg atgagcgcgt gggtgagcca gcgctgccac
     1801 agctggcgga tcacctcggc ggctggtttg cgcagtgcgg tgcgtccctt cacggtcagc
     1861 ttaagccgcc cgccttcgat cttggcgagt ccaccagcct ggaccagcag cggccacgca
     1921 aatgacgcga tcggctcgtc acggtagaag tcgccgtgcg cgagatgcga gcccacggtg
     1981 tagacggtcg ccgccgaggg gcgatgggtc ttctcgctgc accgtagctc gcccgccgcg
     2041 cacagctcca gcacggtacg caggttaagc tgggcttccg gctcggtcag ccgcgtccgg
     2101 tgctccccga ccgcgcccaa cgagccggtg tcgccggcgt tcacacccgt gccctccgct
     2161 atgtcagcca atgacggtac gcc
//
LOCUS       DASVXZ010000495         4613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1640123, whole genome shotgun sequence.
ACCESSION   DASVXZ010000495 DASVXZ010000000
VERSION     DASVXZ010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4613
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1640123"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /locus_tag="VF788_10245"
     CDS             complement(<1..370)
                     /locus_tag="VF788_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934550.1"
                     /translation="MLEELLARVAGRFGRVEPRRRVRGFVLGLLADLPRKNCWSIAEH
                     AGDATPDGMQHLLERAVWDTDGVRDDLRHYVVGHLGDPAAVLVVDETGDVKKGTSTVG
                     TQRQYTGTAGRIENAQVAVYL"
     gene            complement(778..2004)
                     /locus_tag="VF788_10250"
     CDS             complement(778..2004)
                     /locus_tag="VF788_10250"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934551.1"
                     /translation="MNLGEGLRVALRGLRAHRLRSALTMLGIIIGVAAVIVLVAIGNG
                     VHQAINGYLEPLANQIIIVPSTSNVPGGGAPKDLRDADVAALQQPQLAPDVATVIPAI
                     TAQTLAETDLNNFRATVTGTTERWLEVNNWDLQAGSFFNETQVRSTSRVVVLGAAVAT
                     TLFEDGPAGALNRTIRINRQTFRIIGVIQFVGEPGDNTVVMPLPSARRYVFGGGDKIN
                     QIIVQATGRAAVPAAEDQVIRILSDRHRITDPAKRDFEIQSLRSRLDTFNKVMSGLTV
                     FTASVAAISLAVGGLGILNIMLVSVTERTREIGIRKAIGATRRAVLQQFLIESTVLAG
                     IGGFIGILVGVSLSVLAGVIARSFGPTFAALAPAVSIPSVVLSFTVSLAIGLIAGCYP
                     ANRAARLHPAEALRYE"
     gene            complement(2024..3484)
                     /locus_tag="VF788_10255"
     CDS             complement(2024..3484)
                     /locus_tag="VF788_10255"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEX8934552.1"
                     /translation="MPFDVGDVLRARRGENLVLHERHLNSQLARVLKTLGFDRHYIRG
                     EGCYLYDDRGERYLDFLAGFGVYALGRSHPAVKAALHEALDLDLPNMVQLDCALLPGL
                     LAEQLVMRAHPGISRVFFCNSGAEAIESAIKFARRATKRPVVVYAEHGFHGLSTGALA
                     LNGDDEFRAGFGPLLPHTVRVPFGDVGALRTELATGDVAAFIVEPVQGKGVYLAQAEY
                     WKEAQELCRRHRTLLVMDEVQTGVGRTGKFFAHEHWGLEPDIITISKALSGGYVPVGA
                     MLTSDRVFASVYSSMEKALKHSSTFGRNQLAMVAGLATLSVLEDENILQRAAQTGAVL
                     KNALESLCDRYEMLHQIRGLGLMIGLEFGPPQTLSLRRCFSAVERLRKAMFAQLVVVP
                     LFRRHRIITQVAADNVNIVKILPPLIAGQQEVDAFVAALDDVLADAHNGSRLIVELGR
                     MMARGALHQGYQRRQGSFVPEGVVSETRLSSWVKRR"
     gene            complement(4281..>4613)
                     /locus_tag="VF788_10260"
     CDS             complement(4281..>4613)
                     /locus_tag="VF788_10260"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8934553.1"
                     /translation="DVVIHSDRGSQYTSRTFRDMALANGIIPSVGHTGICFDNAMAES
                     FNAAIKKELIHLHTWPTLSKVTKEVFHYIEVYYNRKRPHSRIGNLTPCEVEHNWCQEF
                     DKESLYAG"
BASE COUNT          991 a         1445 c         1297 g          880 t
ORIGIN      
        1 cgaggtagac cgcgacctgg gcgttctcga tccgacccgc ggtaccggtg tactgacgct
       61 gcgtcccgac ggtgctggtg cccttcttga catcaccggt ctcgtcgacc accaaaaccg
      121 ctgccgggtc accaagatga ccaaccacat agtggcgcag gtcgtcacga accccgtcgg
      181 tgtcccagac cgcccgctcc aacaggtgtt gcattccatc cggcgtcgca tcaccggcat
      241 gctcggcgat cgaccagcaa ttcttgcgcg gcagatcagc caacaacccc aacacaaatc
      301 cccggacccg ccgtcgtggt tcgacccggc caaatcggcc ggcgacccga gcgagcaact
      361 cctccaacat ctccggccat tgctgtaccg ctacgctgcg gcccacgacc accgcatgat
      421 cctctaacgt cgccataacc gaagatgatc atgcggtggt cgcttcgtct gggaccgaca
      481 cgctgcaaga tcacgatcta cggctggagt actaggtcac gctttcgcag caaggcttga
      541 aaaatacggc cgtgtttatc ctcgtcggca ccatgccgcc cactttaggg gcgaggtcgg
      601 ggtcgcgtac cagcgcagcg atccgcgcgt tttcccaacc accctgagct tcgccgctag
      661 cggcgatact acaaaatagc cggtacgtct cgtcgtcggc gtgaatctgg cggaataggc
      721 tccgagctga cagcatctgt tctcctttcg cgacgtttgg ccatcgcgta ggttgtgtca
      781 ctcgtatctg agggcctcgg cagggtgtaa ccgggcggcc cggttggctg ggtaacaacc
      841 agcaatgagt ccgatcgcaa ggctgaccgt gaaggagagc accacggagg ggatggacac
      901 cgcaggggcg agtgcggcga aggtgggtcc aaaggagcgc gcgatgacgc ccgcgaggac
      961 tgataagctg acccccacca ggataccaat aaatccacca atgcccgcca gaacggtaga
     1021 ttcgatgagg aattgttgaa ggacggcacg gcgggtggcg ccgattgctt tgcgaatccc
     1081 gatctcacgg gttcgttccg tgactgatac cagcatgatg tttaaaattc cgagccctcc
     1141 gacggccagt gagattgcag cgaccgacgc ggtgaacacc gtgagaccgc tcatcacctt
     1201 gttaaacgta tcgagtcggc tgcgcaggga ctgaatctcg aagtcccgct tcgcggggtc
     1261 tgtgatccgg tgccggtcgc tgaggatgcg gattacctga tcttcggcgg cgggcacggc
     1321 ggcccttcca gtggcttgca cgatgatctg gttaattttg tcaccgccac caaagacgta
     1381 ccggcgcgcg gagggcagcg gcatgaccac ggtgttatcg cctggctcac caacgaactg
     1441 gatcactccg atgatcctga aggtctgacg gttgatgcgg atcgttcggt tcagcgcgcc
     1501 cgcagggcca tcctcgaaca gcgtggtcgc gacagctgca cccagtacga ccaccctgct
     1561 ggtggaacga acctgggtct cgttgaagaa cgaacctgcc tgaagatccc agttgttcac
     1621 ctcaagccag cgttcggtgg tgcccgtgac ggtcgctcgg aaattattga gatctgtttc
     1681 ggccagggtt tgggcagtaa tggccgggat gacggtcgcg acatcaggcg ccagctgcgg
     1741 ttgctgcaag gccgccacat cggcgtcgcg taagtccttc ggagcgcccc cgccagggac
     1801 gttactggtc gagggcacaa tgatgatctg gttggccagt ggttccaggt atccgttgat
     1861 cgcttggtgc actccattgc cgatagccac cagcacgatc actgctgcga ctccgatgat
     1921 gatgccgagc atcgtcagcg cggaacgtag ccggtgcgcg cgcagcccgc gcagggcaac
     1981 gcgcagccct tcacccaggt tcatcgttct acgacgtaat cggtcatcga cgtttcaccc
     2041 aagagctcaa gcgagtctcg ctcaccacac cctcaggtac gaaactgcct tgccggcgct
     2101 gatacccctg gtgcaacgca cctcttgcca tcatgcgacc caactcgacg ataagacgag
     2161 aaccgttgtg ggcatcagca agcacgtcgt cgagggcagc cacaaacgca tcaacctctt
     2221 gctgtccggc gatgagggga gggagaatct tcacgatgtt aacgttgtcc gcggcgactt
     2281 gcgtgatgat ccgatggcga cgaaacaacg gcaccacgac tagctgtgcg aacatcgcct
     2341 tgcgaagccg ctccacggcg ctgaaacacc gccgcagcga aagcgtttga ggcggcccga
     2401 actcaaggcc gatcatcagg cccagcccac gaatctgatg cagcatctcg tagcgatcac
     2461 aaagcgattc gagagcgttc ttcaatacag caccggtctg ggccgctcgc tgcaagatgt
     2521 tctcatcttc aaggaccgaa agggtcgcca ggccggcgac catcgctagc tgattgcgtc
     2581 cgaacgtgct tgaatgcttg agcgccttct ccatcgagct gtacacgctg gcaaagaccc
     2641 gatctgaagt caacatggcg cctactggaa cataccctcc agacaatgcc ttagaaatgg
     2701 tgatgatgtc cggttcaaga ccccagtgtt catgagcgaa aaatttcccc gtgcgaccga
     2761 ccccagtctg cacctcgtcc atgaccaaca gggttctgtg tcgacggcac aactcctgcg
     2821 cttctttcca gtactccgcc tgcgccaggt aaacgccctt accttggacc ggttcaacaa
     2881 tgaaggccgc cacatcaccc gtagctaact ccgtgcgtag cgcgcccacg tcaccaaaag
     2941 gcacccggac cgtatgcggc agtaacggcc caaaaccagc acgaaattca tcatcgccat
     3001 tcagtgcaag agcaccggta ctcaagccgt gaaacccatg ctcagcgtaa accacaactg
     3061 ggcgtttcgt agcccggcga gcgaacttga tcgccgactc gattgcctcg gcgccggagt
     3121 tacagaaaaa aacccggctg atccccggat gcgcgcgcat gaccagctgc tcagcgagaa
     3181 gacccggcag caacgcacag tcgagttgca ccatattcgg caagtcaagg tccagtgcct
     3241 catgcaaggc ggccttgacc gcaggatggc tacgacccag ggcgtacacc ccgaaaccgg
     3301 cgagaaagtc tagataacgc tcgccccggt catcgtacag atagcaccct tcgccgcgga
     3361 tgtaatgacg atcaaagccc agggtcttca ggacacgggc caactgacta ttgagatgac
     3421 gctcgtgcaa caccaagttc tcgccccgtc gcgcacgcag cacatcacct acgtcaaacg
     3481 gcatacctca ccgccgtatg gctcaacgtc attcagatcc tctttgcact ggacccaggg
     3541 gtgttcgaat agcctaccgt ggcgtgggga acatcgcatg acaacatgca ttaaccacct
     3601 aagttcaaag tgttagtacc taattacgag gtcgacttac acatacttcg ctgcagtcac
     3661 gtaacgccca tgctgacgac ccatacgcga ggccgcaggc cttgtccgcc cgcgattcaa
     3721 tctgcatccg ctagtcaact agcctaccga aaccaagcaa agtagtaggc caggacccgt
     3781 ggccggtagc tgctcatcgg gcaacagtgc tctcggcaag aaaagtgcag cgactaccta
     3841 gactcgccgc tgacagtacc taggcaggct gcgcctccca ccgtgagact gtacctggat
     3901 gaccgtgacg gctgaccctg atcaaaatcg cgaggtagga ccgaccccgc ttcaggagta
     3961 caccgtggca ccgccgcgca ccgcgaacga taccctcggc gagctccaag cacggtcctt
     4021 gccccgtatc caggagtgat tcgttggggg ctcagtgccc tctctgccaa cctgggttga
     4081 ggcacccgcc acctaataat tagtgacccg agggcgggga tggatacttc tccggcatga
     4141 cggcaatggt gaccaggttc gaccgggcgc ccgggatcga agatcctggg cgggtgtctg
     4201 gcgcaggaac gcaacgtccc gatcccgagg tgcccgcgcg ggctcggcgt ggagaccaac
     4261 cgctttcgta gacactgtaa ttatcccgcg tacagcgatt ccttgtcgaa ttcttgacac
     4321 cagttgtgtt caacctcgca cggtgtgaga ttgcctatcc tgctgtgcgg tctcttgcga
     4381 ttgtagtaca cctcgatgta atggaagacc tctttcgtca ccttgctcag ggtcggccag
     4441 gtgtgcaggt ggatcagttc tttcttgatg gcggcgttga acgattccgc catggcatta
     4501 tcgaagcaaa tgccagtgtg tccgaccgac gggatgatcc cgttcgctaa cgccatgtcc
     4561 cggaaggtcc ggctcgtgta ttggctacct cggtcagaat ggatcacgac atc
//
LOCUS       DASVXZ010000496         2922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1370912, whole genome shotgun sequence.
ACCESSION   DASVXZ010000496 DASVXZ010000000
VERSION     DASVXZ010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370912"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1577)
                     /locus_tag="VF788_10265"
     CDS             complement(<1..1577)
                     /locus_tag="VF788_10265"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HEX8934554.1"
                     /translation="MSTVEVGVEWRALGPVEVLVDGRLVDLGPPMQRALFGLLLTRVD
                     QPVAFDTVIEELWSGSPPAAAITSLRTYVSNLRRVLEPGREPREPAAVLRTRAPGYLL
                     DSSGVEFDVHRFTEHATAGRKALGRKDPQQAVGEFDAALALWRGPGYADMRGASWAAP
                     VVARLDELRLSVVEARCEAQLALGQHHGVVAELDMHARAHPLREYGCQLLALALYRAG
                     RQAEALGVLRAIRARLAEELGIDPGTALQRLERDILTQAPTLDWQPPTAPTTAPAGES
                     SASAQALPTARTNVRAPTYELDIADGRRVVSTQVQGFAEVVGREDELAALRARFTDPQ
                     RPPRPVLQVLIGLGGMGKTSLARAYAQRYQEQYELIWWIRAENPEAVAGEFRALLDIV
                     APQYAQLSGDPVQAVHAVLANRTEPWLLVIDNVAEPEALRGLLPAAGAGDVLVTSRAG
                     TWPDRRMVRPVAPLTSRHAVRLVTMLSGDSDQATAAVLADELGALPLALAQAGCYVAN
                     SALDLGGYLALYRSCRT"
     gene            1945..2391
                     /locus_tag="VF788_10270"
     CDS             1945..2391
                     /locus_tag="VF788_10270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934555.1"
                     /translation="MTEQSPPQPVQSPLTLVMTAKSTEDYVALQQIIHQMQSLPPEKN
                     PIITALNCLANVHFARFVFLGNEQLAVITTYDGDFDSYINDFINEIGDVFNTLLKHVA
                     DSPPVPVQTYREEFLEFAHSHDLSCVGPFYTAYPDRTVLDILDLAS"
     gene            2418..>2922
                     /locus_tag="VF788_10275"
     CDS             2418..>2922
                     /locus_tag="VF788_10275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934556.1"
                     /translation="MTVELADVQGLIVRGYTMPIARHIGLGVHTLAAARSFLTALAGG
                     DPAVPAVTTAEPWVVKPECCLNLGITYPGLAALGVAPQHQASFPAEYAQGAATRAEIV
                     GDTGASAPDRWLAWLVDPGLHLLVSLFAQSADALESTTKRLQQAWSPGCSELGRLDGQ
                     MLPGDAAH"
BASE COUNT          548 a         1031 c          859 g          484 t
ORIGIN      
        1 tcagtccggc acgagcggta cagagccagg taaccgccca ggtccagagc actgttcgcg
       61 acgtagcagc cggcttgggc cagcgcgaga ggcaaggcac ccaactcgtc ggccaacacc
      121 gcggcggtgg cctgatcgga atcgccgctg agcatggtga ccagccgcac ggcgtggcgg
      181 gacgttagtg gcgcaaccgg ccgtaccatc cgccgatctg gccaggttcc ggcccggctg
      241 gtaaccagca cgtcgccggc gccagccgcg ggcagcaggc ctcgtagcgc ttcgggttca
      301 gcgacgttgt cgatgaccaa cagccatggc tcggtacggt tagccagtac cgcgtgcacg
      361 gcctggaccg gatcgccgga gagttgcgcg tactgcgggg cgacgatgtc caacaacgcg
      421 cggaattcgc cggctactgc ttcaggattt tccgcgcgta tccaccaaat gagctcgtat
      481 tgttcctgat agcgctgggc gtaggctcgc gccagactcg ttttgcccat cccgcccaat
      541 ccgatgagga cctgcagcac cggccgtggc ggccgctgcg ggtcagtgaa cctggctcgc
      601 agcgcagcca gttcatcctc tcggcctact acttcggcga atccttgcac ctgggtcgac
      661 accacacgcc gaccatccgc aatatccaac tcatatgtcg gcgcccgaac attcgtacga
      721 gcagtgggaa gcgcctgggc gctggcggag ctttcgccgg ccggtgcagt cgtcggcgcc
      781 gtgggaggtt gccaatcgag tgtcggagcc tgggtgagga tgtcgcgctc caaccgttgc
      841 agcgccgttc ccggatcgat gcccagctcc tcagccaacc gcgcccgaat ggcccgcagc
      901 acccccagcg cctcggcctg ccgtccagcc cggtagagcg cgagagctag tagctgacag
      961 ccgtattcgc gcagcggatg tgctcgcgcg tgcatgtcca gttcggccac cactccgtga
     1021 tgctggccta gcgccagttg ggcctcgcac cgggcctcta ccaccgacag ccgcagctca
     1081 tccagccgcg cgaccaccgg tgctgcccac gaagcgcccc gcatatctgc atagcctggc
     1141 ccccgccaca gcgccagtgc ggcatcgaac tcacccaccg cctgctgtgg atccttgcga
     1201 cccaatgcct tccgaccggc ggtggcatgc tcggtgaacc ggtgcacatc gaactcgacg
     1261 ccactgctgt ccaacaagta cccaggagcc cgtgtccgca gcaccgcggc cggctcccga
     1321 ggctcccttc cgggttctaa cacccgccgc agattcgaca catacgtccg cagcgacgtg
     1381 atcgccgctg cgggcgggga accggaccac aactcctcga tcacagtgtc gaacgccacc
     1441 ggctgatcca cccgagttag caacagccca aacagggcac gctgcatcgg gggtcccaaa
     1501 tcgaccaaac gaccatcgac caggacctct actgggccta acgcccgcca ctccacgccc
     1561 acctcgaccg tgctcacccc cgctatgtcc atggtccatc cggctcgaag ccgcgtgtag
     1621 tacccagtgt cccccggccc aggagaccga cgaatgccgc aacggcagct agtaggggat
     1681 ctgggctcgc gccacccgtg tgtcgggcac cgcggcatgt gtgcaatcag tgatccccgc
     1741 acagcgacgt tcacccgaag cggcgacgga cccggcgtat caagtgatca acccccagtc
     1801 tcgaaaacat ggtgggttcc catcgacacc gcgcccgaca ggggcggcgc actgggcacc
     1861 atgccagccg ccaaccagta cgccggccat tgtgcttccg cccggccggg cgcaagcact
     1921 atcgacaacc gtagggagga tgcaatgact gagcagtcac ccccgcagcc ggttcaaagc
     1981 ccgctgacgt tagtaatgac ggcgaagtct acagaggact acgtggcgct gcagcagatc
     2041 atccaccaga tgcagtcctt accaccggag aagaacccga tcatcaccgc tctcaactgt
     2101 ctcgccaatg tccactttgc caggttcgtg ttcctcggca acgagcaact tgccgtaatc
     2161 accacttacg acggcgactt cgattcctac atcaacgact tcatcaacga gatcggcgac
     2221 gtattcaaca ctcttctcaa gcacgtcgca gatagtccac cggtgccagt acaaacttac
     2281 cgtgaggaat tcctagagtt cgcccacagc catgacctgt cctgcgtcgg accattctac
     2341 accgcctatc ctgaccgcac ggtactcgac atcctggact tggcgagctg atcgactccc
     2401 gagaaaggtg cgcgatagtg accgttgagc tggccgatgt ccagggcctc atcgtgcgcg
     2461 gctataccat gccgatagcc cgccatatcg gcttgggcgt gcataccttg gctgctgccc
     2521 gcagctttct gaccgcgctg gcaggtggcg acccggccgt tcccgcggtc acgacagccg
     2581 agccctgggt ggtgaagcct gagtgctgtc tcaacctagg catcacctac ccaggcttgg
     2641 cagcactcgg ggtagcgccg cagcaccagg ccagcttccc cgcagagtat gcacagggcg
     2701 cagcaactcg cgccgagata gtgggtgaca cgggtgccag tgccccggac cgctggctgg
     2761 cgtggctggt ggaccctgga ctacatctgc tggtgtcact gttcgcccaa tctgccgacg
     2821 cgctggaatc gacaaccaaa cggctgcagc aggcctggtc gcctggctgc tcggagctgg
     2881 gccgactaga cggccagatg ctgcccggcg acgccgcgca ct
//
LOCUS       DASVXZ010000497         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1281829, whole genome shotgun sequence.
ACCESSION   DASVXZ010000497 DASVXZ010000000
VERSION     DASVXZ010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1281829"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..301)
                     /locus_tag="VF788_10280"
     CDS             complement(<1..301)
                     /locus_tag="VF788_10280"
                     /inference="COORDINATES: protein motif:HMM:NF024736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934557.1"
                     /translation="MSVYLVEATNASCRVSGCLCRDRGPRYPSDATDAEWELLRPEVQ
                     VVMAELRRGPGGRPMEHDLRAVLDAIRYVNRYGIEWRALPVDFPPWEAVYAFFERW"
     gene            564..698
                     /locus_tag="VF788_10285"
     CDS             564..698
                     /locus_tag="VF788_10285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934558.1"
                     /translation="MDDLFGTHTLYWRLSDELALHRQRWFAELTNRKLRAPPTAASPP
                     "
     gene            complement(826..1059)
                     /locus_tag="VF788_10290"
     CDS             complement(826..1059)
                     /locus_tag="VF788_10290"
                     /inference="COORDINATES: protein motif:HMM:NF016070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8934559.1"
                     /translation="MDSRKAELYARDVSGLPFVKSQRSHDDDPPDNCVETYTFEDGVV
                     ALRDSHSPSQVLFFTPAEWDAFGQAMRGEVPFV"
     gene            complement(1073..1918)
                     /locus_tag="VF788_10295"
     CDS             complement(1073..1918)
                     /locus_tag="VF788_10295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934560.1"
                     /translation="MSVSVAQKQQGAVEVLVRALLADGFTGHCCGPQDDPLAMIFVYE
                     WRDHLDVVTMHQNGSAAAARLAKPADVLDPPDTALWVWAGDMDRAVWALLELAHPDDP
                     DAPDPVVPVPIPAVLRAPRDQQPMHVCVPDGGKVGARAARLREAGRKKAITREFFSGL
                     FRQVDAFAAIGAAENFTADGTLRFANYPPMVGRTAIAQFVGILFELATTVEHQLNNFW
                     EVDRTAITNGMVTFTRDDLPGGKLTVPFATVSSFDEDRTLLTDHQVYLDCSALVPTML
                     DSRNS"
     gene            2270..2710
                     /locus_tag="VF788_10300"
     CDS             2270..2710
                     /locus_tag="VF788_10300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934561.1"
                     /translation="MGLDLLLVVLKAIPDIQLLRATDPAITSQTTDLSPYRPVSVMPP
                     IRRDISVVVDSDHLSEDLGDRVRDALSEDATCVEPVHILQQTPCSALPGPALDRLGAR
                     RDQKNLLIRVVPRHVDKTLSNHEANVFTRPHLHRAAPRHHPAMG"
     gene            complement(2807..3040)
                     /locus_tag="VF788_10305"
     CDS             complement(2807..3040)
                     /locus_tag="VF788_10305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934562.1"
                     /translation="MGDVAGQARHRGITVRGIEQAQLNDQDRRRLIQRALREAHRWPD
                     QAGHRADILSGEGRRGPRRHRGRTVVGKALLVV"
BASE COUNT          711 a         1149 c          898 g          570 t
ORIGIN      
        1 tccaccgttc gaaaaaggca tacaccgcct cccagggcgg aaagtccacc ggcagcgccc
       61 gccactcgat cccgtagcgg ttcacatacc ggatcgcgtc cagcacggca cgcagatcat
      121 gctccatcgg tcgcccgccc gggccgcggc gcagctcggc catcacgacc tggacctccg
      181 ggcgtagcag ctcccactcg gcatcggtgg catccgaggg atagcgcggt ccacgatcgc
      241 gacacaggca tcccgacacg cggcaactgg cgttcgtggc ctcgacaagg tagacagaca
      301 tccgcgggct tctggtagat cgagtaggtg gtactcctcg gctaccagga gccccttctc
      361 atgcccggcg cgacacacca ccgtgaccaa tcgctacccg tcctcacccc gggcacactc
      421 aaccaacatc atttgccaac aggctctaaa gcaagcagca ccactgaggt cgctaccacc
      481 acctgcatcg ccatcccagg ttcacctcca acgtcgcgat ctgatcgacg ggttgataca
      541 cgaatacgcc cacgtcgcat gacgtggatg acctattcgg cacccacacc ctctactggc
      601 gcctgagcga cgagctggct ctccaccggc aacgctggtt cgctgaactc accaaccgca
      661 aactccgcgc tccacccacc gcagcgtcac cgccctaaaa gccgacatcc gtacctggat
      721 cagctcctgg aacgtcgacc ccaaaccctt catctacatc aagaccgccg acgagatccc
      781 cgacaacctc gccaactacc gcgacgaatt aacggactca ggacactaga cgaacggcac
      841 ctcgccgcgc atcgcttgac caaaggcatc ccactcagcc ggcgtaaaaa acagcacctg
      901 actggggcta tgactgtccc gcagcgcgac gaccccatcc tcgaacgtgt aggtctccac
      961 acagttgtca ggtgggtcgt cgtcgtggga ccgctgactc ttcacgaagg gcaacccgga
     1021 aacgtccctg gcatacaact ccgccttgcg gctatccatg gatcggctct ttctagctat
     1081 ttcggctatc cagcatcgtc ggtaccagcg ccgagcaatc gaggtagacc tggtggtcgg
     1141 ttagcagggt gcggtcctcg tcgaaactgg acacggtcgc gaagggaaca gtcagcttgc
     1201 caccggggag gtcgtctcgg gtaaaagtga ccatgccatt ggtgatcgcc gtccggtcaa
     1261 cttcccaaaa gttgttcaac tgatgttcca ccgtggtggc caactcgaac aagatcccga
     1321 cgaattgcgc tatcgcagta cgcccgacca tgggaggata attggcgaat cgcagcgtgc
     1381 catcggcagt gaaattttcg gcagcgccga tggccgcgaa agcgtcgacc tgacggaaca
     1441 ggccgctgaa aaactcccgg gttatggctt ttttgcgccc cgcctcacga agccgagcgg
     1501 cacgggcacc gaccttccca ccgtccggca cacaaacgtg cataggctgc tggtcccgcg
     1561 gcgcccgcag caccgcgggg atcgggaccg gaaccaccgg gtccggcgcg tcaggatcgt
     1621 cggggtgcgc gagttcgagc agcgcccaga cagcccgatc catgtcccct gcccaaaccc
     1681 acagcgcagt atccggtggg tccagcacat cggcgggttt cgccagccgc gccgctgcag
     1741 cggacccatt ctgatgcatg gtgaccacat cgaggtggtc acgccactca tagacgaaga
     1801 tcatcgcaag gggatcgtct tggggtccgc agcagtgccc ggtaaacccg tcggcgagca
     1861 gggcccggac tagaacctcg actgcacctt gttgcttttg agcaacgctc acgctcacct
     1921 ccaggcacct catgatctcg gatcagcttc ccacctcgtg acgcccctcg gtgcgggacc
     1981 cccattgcaa cagccgatca gtcgaattgt ccagcacgca cacccttggt gaacgcaaac
     2041 caccggacgc ggctgaacgt caagctccaa ctgttcgaat ccttgctgtc ccggatccag
     2101 gcgacaacca ccggactcag cgacctcaac aagctggtgc caccgttggt gctgcggcca
     2161 aacttccgcc acgtaagacc ggacggattc atgatctact ccctcgttcg cgtatttgtc
     2221 gacaagcgcg cgaggaagtg gacagttcct acagtggcag gcgctgggca tgggactcga
     2281 cctcctcctc gtggtgctca aagcgatccc ggatatccaa ctgctgcgcg ccactgaccc
     2341 ggccatcacc agccagacga ccgatctcag tccgtatcgc ccggtctcgg tgatgccacc
     2401 gatccgccgg gacatttctg ttgtcgtaga cagtgatcac ctcagcgagg accttggtga
     2461 ccgcgtccgc gacgcactca gcgaagacgc gacctgcgtg gaaccggtgc acatcctgca
     2521 acaaacaccc tgtagcgcac tacccggccc ggcgttggat cggttgggcg ctcgccggga
     2581 ccagaaaaat ctcttgatcc gggttgtgcc gcgtcatgtc gacaagactc tgtcaaacca
     2641 tgaggccaac gtttttacgc gaccgcatct acaccgcgct gcaccaaggc accacccagc
     2701 aatgggctag ctctgcccac ataggcgcct gaaccgctct tgcaccagcc agcacggcca
     2761 ccatcgacgt caccgtcccc cagaaccaac acgcccagcc gggcactcag acgacgagca
     2821 gagccttgcc cacgacggtg cggcctcgat ggcgacgtgg gcctcggcgg ccttctccag
     2881 aaagaatgtc tgcccgatga ccggcttgat ccggccagcg gtgggcttcc cgcagcgctc
     2941 gctggatcaa tcgccgtctg tcctgatcgt tgagctgggc ttgctcgata ccgcgcacgg
     3001 taatgccacg gtggcgtgcc tgcccggcga cgtcacccac caacccaacc atccgcctcg
     3061 gcggtccgag gcgaagcctc tttagaaaag ggtcgagtat tggcgtagtg atagataaaa
     3121 caaaactatg gcgttcgagg tgttcccgac agcgccatgg acatggatct gaacctagac
     3181 taatcaacag tggtcttgtc aagccattca agacagcgca ccgcacaaac gtaaccgaag
     3241 aggcatcaag tgaaccaatc cgggattcgc accgtaagcc acccctcgga ccggtccact
     3301 agaaaatgtt cactgctcac cgtattga
//
LOCUS       DASVXZ010000498         7508 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1219226, whole genome shotgun sequence.
ACCESSION   DASVXZ010000498 DASVXZ010000000
VERSION     DASVXZ010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7508
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1219226"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..615
                     /locus_tag="VF788_10310"
                     /pseudo
     CDS             1..615
                     /locus_tag="VF788_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097583.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
     gene            612..1226
                     /locus_tag="VF788_10315"
     CDS             612..1226
                     /locus_tag="VF788_10315"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX8934563.1"
                     /translation="MRPLRLVLVRHGQTTANAEGMLDTRLPGRPLTEWGHWQAAELAQ
                     RLADEPVVAVYASRALRAQQTAQPVAAMHGLAAQILDGVHEVFIGDLEGCQTPEAHRS
                     LHELYHSWHYGDLEAARPGGETGKQVLDRYLADVAAIRSAHREGTAVLVSHGAATRLA
                     VVALAVNVDGSFAEPRYLANAATVLLEADGTGWRCVRWDDIALS"
     gene            complement(1276..1629)
                     /locus_tag="VF788_10320"
     CDS             complement(1276..1629)
                     /locus_tag="VF788_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase family protein"
                     /protein_id="HEX8934564.1"
                     /translation="MTNRWLPDDRFDELVAEALDLIPHELAAAMDNVVVLVEPRHPDE
                     PGLLGLYEGIALTSRDTYYSAVLPDRITIYREALLDICDNEQKLVEEVAVTVVHEVAH
                     HFGIPEHRLHELGWG"
     gene            complement(1626..2651)
                     /locus_tag="VF788_10325"
     CDS             complement(1626..2651)
                     /locus_tag="VF788_10325"
                     /inference="COORDINATES: protein motif:HMM:NF025215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation family protein"
                     /protein_id="HEX8934565.1"
                     /translation="MPPPDAPGTRDAGHRASRSTRRLAAGAVLGALAALVALGGPAGK
                     APLLAVGPSLVTTPSPQPLRVPVHTCLSWQKQDATDAKTVSCTQPHLFEVTGALDLHE
                     FGPQEAFPDPARWQELVAQRCTERTMQALADRFDPFGRFTVGAIKPSEAGWQRGDRTL
                     RCGVQSTGRAGTLFPTTGDVLTQDQSDVHAPGTCLGNDGKAVGDPVECAGPHAIEVVG
                     VVDLKRAFPKGYPDEATQDKTLSTECTQLARDYSGGPAVVGNKGLTLFWGTLRTQSWQ
                     AGSTRVDCRLGAFLPDRSGFAPVTGSVKGPVRIGKEPAPPAVPNPGPAPVTPPVLQVD
                     APPPPPP"
     gene            complement(2744..3412)
                     /locus_tag="VF788_10330"
     CDS             complement(2744..3412)
                     /locus_tag="VF788_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEX8934566.1"
                     /translation="MLCHLGMPLALVPSWLDPDHLLRMLGPYVLVGLCLIIFAECGLL
                     IGFFLPGDSLLFTAGLFVASGLINTPIWLVCLLLTACALAGNVAGYYLGYRVGPALFN
                     RPDSRLFKREHVDKTHAFFDRYGARAIVLGRFVPIVRTFITAIAGVGRMDARKYFIYS
                     IIGGVVWASGVTLLGFWLGGITFVRDHVELILVGIVALSLIPIVIELVKARTASRPTA
                     DSSR"
     gene            complement(3479..3703)
                     /locus_tag="VF788_10335"
     CDS             complement(3479..3703)
                     /locus_tag="VF788_10335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934567.1"
                     /translation="MTEQVGPKLSAALRAQASGLGTGSPGGPTPPPAAVSPGHGRTQA
                     NPRLPAWAVLALAVLLGAMAGGLAGMISTW"
     gene            complement(3759..4295)
                     /locus_tag="VF788_10340"
     CDS             complement(3759..4295)
                     /locus_tag="VF788_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SigE family RNA polymerase sigma factor"
                     /protein_id="HEX8934568.1"
                     /translation="MTLGHLRVLDAPPVPDTETPLTLEDLYRQHRMRLVRLAILLVDE
                     ATTAEDVVQEAFTGLHRHWSGLRDEAAALGYLRTAVVNGSRSVLRRRKTARGYVPPHQ
                     ANARSAESLAMLTTEHHAVVAALGQLPPRQREVLVLRYYGGMSEAEIATATGVSRGTV
                     KSSASRALDALQRILEHS"
     gene            4549..5583
                     /gene="fbaA"
                     /locus_tag="VF788_10345"
     CDS             4549..5583
                     /gene="fbaA"
                     /locus_tag="VF788_10345"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEX8934569.1"
                     /translation="MPIATPEVYSEMLDRAKADEFAYPAINVTSSETLNAALRGFAEA
                     SSDGIVQLSTGGSEFASGSKVKDMVTGSVAMAEFARVVAAKYPINIVLHTDHCPENKL
                     DTFVRPLIAISHERVGRGENPLFQSHMWDGSATELHRNLSIATELLAACAKAKIILEV
                     EIGVVGGEEDGVSREINEKLYTTAEDYEHTVNALGGGEQGRYLLAATFGNVHGVYKPG
                     NVKLRPEILQMGQEVAARALGQPAGSKPLDLVFHGGSGSELAEIHQALSYGVVKMNVD
                     TDTQYAFTRPIAAHMFHNYDGVLKVDGDVGNKKVYDPRSYLKLAELSMAARVSQACEN
                     LRSAGRTLAG"
     gene            complement(5611..6045)
                     /locus_tag="VF788_10350"
     CDS             complement(5611..6045)
                     /locus_tag="VF788_10350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8934570.1"
                     /translation="MPGELNIGLLLYLPYRFLENRVFTALAQAGYGDVTPAQARIFQR
                     IGPAGTRLTELAEAAQVTKQTAGFLVDQLENAGYVERTPDPTDARARLVRITTRGAAT
                     IPISQAAIAAIEQEWASHLGEQRMAQLREALARLREITDPYL"
     gene            6225..6641
                     /locus_tag="VF788_10355"
     CDS             6225..6641
                     /locus_tag="VF788_10355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020663936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3151 domain-containing protein"
                     /protein_id="HEX8934571.1"
                     /translation="MNVHGNLLGPNPTLLPEQSDAEATLAAANDPATVAAAYPEFSAA
                     WAALAERALDEGDAVAGYAFARTGYHRGLDHLRRAGWKGHGPVPWSHGPNRGFLRALA
                     ALARAAAEIGEDPEARRCRDFLDECDPAAAEALGLR"
     gene            7432..>7508
                     /locus_tag="VF788_10360"
     CDS             7432..>7508
                     /locus_tag="VF788_10360"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX8934572.1"
                     /translation="MPTIVLIGAQWGDEGKGKATDLLGER"
BASE COUNT         1253 a         2473 c         2593 g         1189 t
ORIGIN      
        1 gacgtgcgca ccgtggcgac tcatccgcac gccgccgcgc aggtccggtg ttgactcggc
       61 acgcacctgc cggaggccac gacggtgctg accgactcca cgtctgcggc ggcggtcgcg
      121 gtgctcgagg gccggatcga cgccgcggtg tgcgcaccgg tcgcgctgcg gcactacccg
      181 ctggcggagc tggcgaccgg agtgcacgac aaggacgacg cgaagacccg attcctgctg
      241 ttacgccgtc ctggagcgtt gccgccgccc accggtatag accgcacctc gctggtcgcg
      301 atggctgttg accggcccgg ggcgctgctg gaggtactcg ccgagttcgc cctgcgtggg
      361 atcaacctca cccggataga gtcccggccg atgaaggcca agctgggcga gtaccagttc
      421 tttttggact gcgagggtca cgttgcgcag gacgcgatcg gtgacgcgct ggccgagctg
      481 caccggcgtt gcacctgggt gcgcttcctc ggctcctacc cgcgagtggg tgccgcccgt
      541 cccggtccgg acccggccgg gttcgcggcc gcccgggagt ggcttctggc cgtgcgcgcc
      601 gggcagagtg cgtgaggccg ctgcggctgg tgctggttcg gcatgggcaa accacagcca
      661 acgccgaggg gatgttggac acccggctgc cgggccgccc gttgaccgag tggggccatt
      721 ggcaagctgc cgagctggcg cagcggctgg ccgatgaacc ggtggtggcg gtgtacgcca
      781 gccgtgcatt gcgtgcccag cagaccgcgc agccggtcgc ggccatgcac ggcctggcgg
      841 cacagatcct cgacggtgtg cacgaggtct tcatcggcga tcttgaagga tgccagacgc
      901 cggaggctca tcggagcctg cacgagctgt accactcatg gcactacggg gacctcgagg
      961 cggcgcgacc cggcggcgag acagggaagc aggtactgga ccgttacctc gccgacgttg
     1021 cggcgatccg ctcggcgcac cgggagggca ccgctgtgct ggtaagccat ggcgccgcca
     1081 cccggttggc agtggtcgcg ctcgcggtca atgtcgacgg ctcgttcgcc gaaccccgct
     1141 acctggccaa tgccgcgaca gtcctgctgg aggccgacgg taccggctgg cgctgcgtgc
     1201 gctgggacga catcgcgctg agttagcccg gtgcggcacg ctttgtggca tcaggtgatg
     1261 caggtaggag ctgggtcagc cccagccgag ctcgtgcagc cggtgctcgg ggatcccgaa
     1321 gtgatgcgcc acctcatgca ccacggtcac cgcgacctcc tccaccagct tctgctcgtt
     1381 gtcacagatg tcgagcaggg cctcgcggta gatggtgatc cggtcgggaa gcaccgcgct
     1441 gtagtacgta tctcggctgg tgagcgcgat tccctcgtag aggcccagca acccgggttc
     1501 gtcaggatgg cgcggctcca ccagcacgac cacgttgtcc atcgccgcgg cgagctcatg
     1561 cgggatcagg tccagggcct cggcaacaag ttcgtcgaac cggtcgtcgg gaagccacct
     1621 gttcgtcacg gtggtggggg cggcggtgcg tccacctgga gtaccggcgg tgtcacgggc
     1681 gcaggtccag ggttgggcac agcgggtggg gccggttcct tgccgatccg aaccggtccc
     1741 ttcacgctgc cggtcaccgg agcgaaaccg gaacggtcgg gcaggaaggc acccagccgg
     1801 cagtccactc tggtgctgcc ggcctgccag ctctgggttc ggagcgttcc ccagaacagc
     1861 gtgaggcctt tgttcccgac caccgcgggg ccgcctgagt agtccctagc cagctgggtg
     1921 cattcggtgc tcaacgtttt gtcctgagtg gcttcatcgg ggtagccctt ggggaaggcg
     1981 cgcttgagat cgaccactcc gacgacctcg atggcatggg gtcccgcgca ctcgacggga
     2041 tcgcctactg ctttgccgtc gttgcccagg caggtaccgg gggcatgcac atccgattgg
     2101 tcctgcgtca gcacatcacc ggtggtgggg aacagcgtcc cagcgcggcc ggtggactgg
     2161 acaccgcagc gcaatgttcg gtctccccgt tgccagccgg cctcgctggg tttgatcgct
     2221 ccgacggtaa atcgaccgaa cgggtcgaag cgatcagcca acgcctgcat ggtgcgctcg
     2281 gtgcaacgct gcgccacaag ctcctgccag cgcgccggat cggggaaagc ttcctggggg
     2341 ccgaactcgt gcaggtccag cgctccggtc acctcgaaca ggtggggctg cgtgcagctc
     2401 actgtcttcg cgtcggtggc gtcttgcttc tgccagctca ggcaggtgtg tacgggaact
     2461 cggagtggct gcgggctggg ggtggtgacc agactcgggc cgaccgcgag taggggtgcc
     2521 tttcccgccg gcccaccaag ggcaaccagg gccgccagcg cgcccagcac ggctccagcc
     2581 gcgagccgcc gggtgctgcg gctggcgcga tgcccggcgt ctcgggttcc tggcgcatcg
     2641 ggaggtggca tctacatcca tcttgctacg ggaacgagga agccacccta accgcgatcc
     2701 catcgtgctg gccatcatgt agtcggtgga tgggctgggg gcctcacctg gagctgtcag
     2761 cggtcggtcg gctcgccgtg cgggccttga ccagctcgat gacgatcggg atgagcgaca
     2821 gcgcgacgat accgaccagg atcagctcca cgtgatctct gacgaacgtg atcccgccga
     2881 gccagaagcc gagcagggtc accccgcttg cccagacgac gccaccgatg atcgagtata
     2941 tgaagtactt acgagcgtcc atccggccca caccggcgat cgcggtgatg aaggtccgca
     3001 cgatcggaac gaaacggccc agcacgatcg cccgcgcgcc gtaccggtcg aagaaggcgt
     3061 gtgtcttgtc cacgtgctcg cgtttgaaca gtcgggagtc cggtcggttg aacagcgcgg
     3121 gtcccacccg gtagcccaag tagtagccag ccacattgcc cgccagcgca cacgccgtga
     3181 gcaacaggca aaccagccag atcggagtgt tgatgaggcc gctcgcgacg aacaggccag
     3241 ccgtgaacag cagcgagtcg ccgggcagga agaacccgat caggagcccg cattcggcga
     3301 agatgatcag gcaaagccct accagcacgt agggccccag catccgcagc aggtgatcgg
     3361 gatcgagcca ggagggaacc agagccagtg gcatgccgag gtggcagagc atcacgccgt
     3421 caccatatcg ggttattcag gcatgcctgg ttgtgcaccc ccgcgggcgg tgccgtcatc
     3481 accaggtgct gatcatgcca gccagcccgc cggccattgc gccgagcagt accgccagcg
     3541 cgagaactgc ccaggctggc agccgtggat tggcctgcgt ccgtccgtgg cccggggaca
     3601 ccgctgcggg aggaggcgta ggtcctcctg gtgaccccgt gccaagcccg gacgcttgtg
     3661 cgcgcaaagc ggcggacaac ttcggaccca cctgctcggt catccccgtg ccattcgagg
     3721 taggaacagg gccattcggg gtgtgaacac tggagtactc acgagtgttc gaggatccgt
     3781 tgcagggcat ccagtgcccg gctggcactg gacttgacgg tgccgcggct gaccccggtc
     3841 gccgtcgcga tctctgcctc gctcatccct ccgtagtagc gcagtaccag tacttcgcgc
     3901 tggcgcgggg gcagttggcc caacgcggcg accaccgcat ggtgctcggt ggtgagcatc
     3961 gctagtgact ccgcggagcg ggcgttggcc tgatgtggcg gaacgtagcc gcgcgcggtc
     4021 ttgcggcggc gcagcaccga gcgggaacca ttgacgaccg cggtgcgcag gtagcccagc
     4081 gcggctgcct cgtcgcgtaa cccggaccag tgccggtgca gcccggtgaa cgcctcctgc
     4141 acgacgtctt cagcggtggt cgcctcgtcg accagcagga tcgccaatcg caccagccgc
     4201 atccgatgct ggcgatagag atcctccagc gtcaacgggg tttcggtgtc cggaacgggc
     4261 ggggcgtcca gtacccgtag gtggccaagg gtcatctcaa ccgagtgctg cacgctcgtg
     4321 tgctccagag gttcatcggt ggccacgccg aaaacgtact gcggtcatat cacgcgcatc
     4381 cgatcgcatc tcgccaccag cggtgagaca tactgcgctc tgatcgtcgg ccctgccggc
     4441 agcgattcct ggtcggctcg ccggctgcag tccatggccg gcccgccggc cgcgagtcac
     4501 ccgtgcacca tgactaaata gcaccagata tccggaggtc gtttccctat gcccatcgca
     4561 acgcccgagg tctacagcga gatgctggat cgcgcgaagg cggacgagtt cgcctacccg
     4621 gcgatcaacg tgacctcatc ggagacgctg aacgcggcgc tgcgcggatt cgccgaggcc
     4681 agcagtgacg gtatcgtgca gctctccact ggtggctcag agttcgcctc gggcagcaaa
     4741 gtgaaggaca tggtcaccgg ctcggtcgcg atggccgagt tcgcccgtgt cgtggccgca
     4801 aaatacccga tcaacatcgt tttgcacacc gatcactgtc ccgagaacaa gctcgacacc
     4861 ttcgtccggc cgctgatcgc gatctcccac gagcgggtag gccgtggaga gaacccgctg
     4921 ttccagtcgc atatgtggga cggctctgcc accgagttgc accgcaatct gtcgatcgct
     4981 accgagctgc tggcagcctg cgccaaggcg aaaatcatct tggaggtgga gatcggtgtt
     5041 gtcggtgggg aagaggacgg ggtctcgcgc gagatcaacg agaagctcta caccacggcc
     5101 gaggactacg agcacaccgt caacgcactc ggcggtggcg aacagggtcg ctacctgctg
     5161 gccgcgacat tcggcaacgt gcatggtgtg tacaaaccgg gcaacgtgaa gcttcgcccg
     5221 gagatcctgc agatgggtca ggaggttgcc gcccgggcgc tgggtcagcc ggccggttcc
     5281 aagccgctgg acctcgtctt ccatggtggg tccggttcgg agctggccga gatccaccag
     5341 gcgctgtcct acggggtggt caagatgaac gttgacaccg acacgcagta cgcgttcacc
     5401 cgacccatcg ccgcgcacat gttccacaac tacgacgggg tcctcaaggt cgatggcgac
     5461 gtgggcaaca agaaggtcta cgacccgcgg tcatatctca agctcgctga gctgtcgatg
     5521 gccgctcggg tgtcacaggc ctgcgagaac ctccgctccg ccggccgcac cctggcgggt
     5581 tgaggactcc tcaagaggta ccgggtccag ctacaggtag gggtcggtga tctcgcggag
     5641 ccgggcgagc gcctcgcgca gctgggccat gcgctgttct cctaggtggc tggcccattc
     5701 ctgctcgatc gcggcgatgg cagcctggct gatgggaatg gtcgcggcgc cgcgagtggt
     5761 gatgcggacc aggcgtgcgc gagcgtcggt ggggtcgggg gtgcgctcga catatccggc
     5821 gttctcgagc tggtcgacca ggaacccggc ggtctgcttg gtgacctgcg cggcttcggc
     5881 aagttcggtc agccgggtgc cagccgggcc gatgcgctgg aagatccgcg cctgggccgg
     5941 ggtcacgtcg ccgtacccgg cctgcgccaa tgccgtgaag acgcggttct ccaagaagcg
     6001 gtaggggagg tagagaagca gcccgatatt gagttcgccc ggcacggcac tccttgacga
     6061 tagtcagcga aactaattat attagtaagc atatcttact atcggaggag ccaggtggat
     6121 cgtgagcaga tgtgagcggc tcataccaaa tggggataac ttcagttcgc cgcagtggat
     6181 cggttggcta cctaccgatc gcggcgacac ggcaggatgg tgcgatgaac gtgcacggca
     6241 acctgctggg acccaacccg actctgctac ccgaacagtc tgacgccgag gcgaccttgg
     6301 cggcggcgaa cgatccggcg acggtggccg ccgcataccc cgagttctcc gccgcctggg
     6361 cagcgctggc cgagcgggct ctcgacgagg gggatgccgt tgccggctac gccttcgccc
     6421 gtacggggta ccaccgcggt ctagaccatc tccgtcgcgc cggctggaaa ggacacgggc
     6481 ccgtgccgtg gtcacacggc ccgaaccggg gattcctccg ggcgcttgca gcgttggccc
     6541 gggcggccgc cgagatcggc gaggacccgg aggcccggcg gtgccgggat ttcctcgacg
     6601 aatgcgatcc cgccgcggcc gaagccctcg gcctgagatg atcgcgaccg actggacggc
     6661 gggggcggga tagaagccgg cagggaggcg cgacacgccg gggtcagggg ttagcgcggg
     6721 attcggatca ggtgccagtc ctcggtgtgg cggtaccagg tccagcggtc agttgtgcga
     6781 ccagcgacgc cgtcgcgcca cgcgttggtc ggctggcaac cgagctgcac ggcccgccca
     6841 gcggcatggc gcacccggcg gccgggcagt ccgcggcgca ccacgcggac cacgagcccg
     6901 agcgtgcggt ccggcgtgac ctccagccgg gaggcccgcc cgcgcagcac cacctcgtcg
     6961 tcgcagtagg ccaccccgtc cagtggcgca accactccgc gtccgaccag tacgccacct
     7021 gcatcatcac gcaccagggg cactggatcg ggatcgccgc acagagccag ggaagccgcc
     7081 gccgccggta ccaccggcag accccagagc tgggcaaccg ctgaggaacc ttcgagcggt
     7141 acgtagccca ccggcacggc gccgaggctc tcggtgcgca gcagccggag cagcaccgcg
     7201 gccaggtcgg cgtcggtgcc gcagaccacc aagcgccggc cggccagacc ggccaggacc
     7261 gagtcgagct cctcgcggcc gggtcgcgcg gaaaccgccg tcgtcggggg acactgcact
     7321 ccgggccatc gagcagaccc gcaggtcagc acctcagcct cgaccacatt cgccccttga
     7381 aggtttacgc tcgcctcggc gcgcccgaat cgaccccagt tggagtacca catgccgacg
     7441 atcgtgctaa tcggcgccca gtggggcgac gagggcaaag gcaaggccac agacctgctc
     7501 ggcgagcg
//
LOCUS       DASVXZ010000499         5331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_680883, whole genome shotgun sequence.
ACCESSION   DASVXZ010000499 DASVXZ010000000
VERSION     DASVXZ010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5331
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680883"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VF788_10365"
     CDS             <1..305
                     /locus_tag="VF788_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934573.1"
                     /translation="WTTEVVYAITSLTTEQATATDLATWIRGHWAIENRLHWVRDVTY
                     DEDRSQIRTHTGPRTMASLRNLALSILRINGATNIAQALRHHAWDPLRPTQLLLTS"
     gene            378..806
                     /locus_tag="VF788_10370"
     CDS             378..806
                     /locus_tag="VF788_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934574.1"
                     /translation="MIVGQARGILATDFFCVDTLLQRLYVLFVVEHATRRVHLLGVTA
                     HPSGAWIAQQARNFVMDLGDRAAEFTVLIRDRDSKFTGVFDAVFASEGMHVLRTPVRA
                     LGERDCGTMDWNPPPGTAGPKPDPQPPASHDSAHRVRGAR"
     gene            748..945
                     /locus_tag="VF788_10375"
     CDS             748..945
                     /locus_tag="VF788_10375"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934575.1"
                     /translation="MILNRQHLTTVLTEYVAHVNQHRPHRALNQVAPLRSLPPPAAPS
                     QLCLRRRDLLGGLIHEYAQAA"
     gene            1141..1671
                     /locus_tag="VF788_10380"
     CDS             1141..1671
                     /locus_tag="VF788_10380"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEX8934576.1"
                     /translation="MSAVVSPVPALRAAAGYNVGLLVIRLAAGLTLTVHGSQKLFGWF
                     GGRGVDGTGAFFEQIGYRPGKIFAVIAGLCEFGGGLAFALGVLTPLAASAMIGVMLNA
                     VAADWHKGFLNGFEYPLLIALVAVGVALAGPGQYALDTVTGRVTGLQLGDWRYGIAAI
                     TLAVVVAALTLLAKAG"
     gene            1984..2487
                     /locus_tag="VF788_10385"
     CDS             1984..2487
                     /locus_tag="VF788_10385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934577.1"
                     /translation="MSTIWRSLGARPAAGIAAIVLAAAACGSGESGSKTETVQSPSPK
                     ASAFHDTMHGLWQDHGTWTRLAIVSFADNSPNLQATQERLLANQTDIGNAIKPYYGAD
                     AGSKLTGLLQQHIQTAVGVLKAAKTGNPAEIKQAQAARSVQTATRSLTSSTPPTRGTG
                     RETRCRP"
     gene            3265..4788
                     /locus_tag="VF788_10390"
     CDS             3265..4788
                     /locus_tag="VF788_10390"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934578.1"
                     /translation="MALLDPNVSLWVATTPETSYPRLSGTYDADVVVVGAGITGLTTA
                     LLLARGGVSVAVVEAHRVASGTTGYTTAKVTSLHSLTYASLVKQLGQDKARLYGQANQ
                     AAIEQIATLVDSLGIECGFTRAPAYTYTRDAGQRSSIQAEVSAAQSLGLPASFTQDSE
                     LPYPIDAAVRFEDQAHFHPRRYTLGLASAIEAAGGAIFEQSRVLDIDERNGAVLVQTA
                     GGQVRARAAVVATLLPFLDIGGYFAKVHPARSYALSVRCPGSVPAGMYLSIDPPTRSV
                     RPVDIDGAVGLVIEGSGHKPGQTEDTERYYTDLEAWARETFEVEAVEYRWSAQDYVSV
                     DEVPYIGRCPRTEAVYVGTGYKKWGMTGGTVAGMIITDLIGGRDNPWLEVFDATRVGT
                     GQAAMKFVRENASVGMHFVKDRLERLRAGQLADLAPGTGGMAKVESGTVGAYRDTSEK
                     IHAVSITCTHLGCTLKWNPAEISWDCPCHGSRFTYTGEVIEGPATQPLEQIPVENLD"
BASE COUNT         1000 a         1623 c         1711 g          997 t
ORIGIN      
        1 aatggaccac cgaagtcgtg tatgcgatca ccagtctgac cactgagcag gccaccgcaa
       61 ccgacctcgc cacctggatc cgcggccact gggccataga aaaccgcctg cattgggtac
      121 gcgatgtcac ctacgacgaa gaccgctccc aaatccgcac ccacaccgga ccccgcacca
      181 tggcctctct cagaaacctc gccctgagca tcctgcgcat caacggcgcc accaacatcg
      241 cccaagccct ccgacaccac gcatgggacc cactccggcc cacccaacta ctgctgacta
      301 gctgaaaggg actttgccgg agccgtgggc cgtccacagc ggtgagctgc ggcatcgctg
      361 gacagtggtc gtcgggcatg atcgtcgggc aagcccgggg cattctcgcc acggacttct
      421 tctgcgtcga cacgctgctg cagcggttgt atgtgctgtt cgtggtggaa cacgcgaccc
      481 gtcgcgttca ccttctggga gtcaccgccc accccagcgg cgcctggatt gcccagcagg
      541 cacgcaactt tgtcatggac ctcggtgacc gcgcggctga gttcacggtg ttgatccggg
      601 atcgcgatag caagttcacc ggcgtttttg atgccgtgtt cgccagcgag ggtatgcacg
      661 ttctgcgcac gccggtgcgg gcactcggcg aacgcgattg cggaacgatg gattggaacc
      721 ctccgccggg aactgctgga ccgaagcctg atcctcaacc gccagcatct cacgacagtg
      781 ctcaccgagt acgtggcgca cgttaaccag caccgtcccc accgcgcgct caaccaagta
      841 gcaccattga ggtcactacc accgcctgcg gcgccatccc agctttgcct tcgacgtcgc
      901 gatctgctcg gcgggttgat acacgaatat gcccaggccg catgacgtgg acgaccagct
      961 cggcaccgac aggaaccaga cacacgagaa ccgacacgga caagcagcac agacagttgc
     1021 cagccagcag tagctaattt cgtcaacatg ggttattttt agaatgagcc gaggggaact
     1081 atgcagtcgc tgcgcgtact gctatcggtc agcacagcga ccaggacctg ggaggatgga
     1141 gtgtccgctg tcgtgtcgcc tgtccccgcg ctgcgggctg ctgccgggta caacgtggga
     1201 ctccttgtta tccggttagc cgccggcctc actctcaccg tgcacggcag ccagaagctg
     1261 ttcggctggt tcggcggccg tggggtcgac ggcacgggag ccttcttcga acagatcggc
     1321 taccgacccg gcaagatctt cgcggtgatc gccgggctgt gcgagttcgg tggtggactt
     1381 gcgttcgcgc tcggtgtgct tacgccgctg gccgcctcgg cgatgatcgg cgtcatgctc
     1441 aacgctgtcg cggccgactg gcataagggg tttttgaacg gctttgaata tccactgttg
     1501 atcgctctgg tcgcggttgg cgtcgcgctc gcgggtcctg gccagtatgc cttggacacc
     1561 gtgaccggcc gcgtcaccgg actacagctt ggcgactggc gatacgggat tgccgccatc
     1621 acgctggcag tagttgtcgc ggcgctgacc ctacttgcca aggccggcta gggacgaagc
     1681 gtgccagagt tgcatcggcc gggacgctcc taccgatcgc taggacggcc tgccggggcc
     1741 ggctgaccga tcacaccgct cgcatcacat cccggccagc tggccgccga gatcgagccg
     1801 cgggtatgtg agctgcgctg atcgcatccc cggtgggatc tcgccggttg gtgcatgaac
     1861 tgtgccggct cggaggaggc cgcgcacacg gcgtctgcga gtaggtagct cttccagggc
     1921 ttggctcctg acaacggagt attgacattt aacgttagtt ttagagttaa aaaggggtat
     1981 gtgatgagta ctatctggcg ttctcttggc gcacggcccg cggctggtat cgccgcgata
     2041 gtccttgccg cagccgcctg cggctccggg gaatccggat caaagactga gaccgttcag
     2101 tctccgagcc ccaaggcgag tgcgttccat gacaccatgc acgggttgtg gcaggaccac
     2161 ggaacctgga ctcgcctggc gatcgtgagc ttcgcggaca actccccgaa cctgcaggca
     2221 actcaggagc gactgctcgc taaccaaacg gatatcggca acgccatcaa gccctactac
     2281 ggcgccgatg cgggcagcaa gctcacgggt cttctccagc agcacatcca aactgcggtc
     2341 ggggtgctca aggctgccaa gaccggcaat ccggcggaga tcaagcaggc ccaagccgcg
     2401 cgttctgtgc aaacggcaac cagatcgctg acttcctcca cgccgccaac ccggggaact
     2461 ggccgcgaga cgcggtgcag accatgatga ggacacatct ggaccaggtg gtggagatgg
     2521 gctctgagct cacgcggcac tacgcgaaaa gcgccggtgt ctggagaacc cctaccgtga
     2581 ccacatcatg gccatggacg acacactctc aaacggcatc atcaagcaat tcccggatcg
     2641 ctgcagctaa tcggccgtcg catccagcat cggtggtacg gcggagtctc atagatagct
     2701 acctgatttc cacgctgatc ctcgtcttcg ccgagacacg ggatcgctgc gctcgcacgg
     2761 gccatagtgg gtgaggcatg ccaagttgcg tcggtcgaag agggccactc tcaccgtccc
     2821 ggcagaggtg atcggagaca agggcgaggg tcgcaccgct aaccacgaaa tcggctaggc
     2881 agtgtgacca gcaactgaag ccgatccgta cccatcatct ggaacttggc atccgaacga
     2941 gggcatgcga aaccaggcgg ggggaagcct ggataggagc ggggccggct gcctgttcga
     3001 gccggtgaat ccgagtggcc cgcggcggag gcgccgcttc accacctttg tgcgcgacgg
     3061 aagcggcctt ggggtcgcgt accgcacaac ggatcctcca ggcttatggt ggacgacgct
     3121 gcgtagagca ccacctggta tgggaagttg aggtgtacgc cctggggtca aagggtggag
     3181 gaacagcatc caaggcaaag tcataaggtg catccgaggc agcgccttgg ccgtgggaat
     3241 gtgcgatgtg aggggagccc cttgatggcc ctgctggatc ccaatgtgtc gctgtgggtg
     3301 gcgacgacgc cggaaacatc ctatccgcgg ctgagcggga cctacgatgc tgatgtcgtc
     3361 gtggtcggtg ctggcatcac gggtttgacc actgcgttgc tgttagcgcg gggtggtgtc
     3421 tcggtggcgg tggtggaagc ccaccgagtg gcctcgggca cgacagggta caccacggcg
     3481 aaggtgactt cgctgcactc gttgacctac gcctccctcg tcaagcaact gggccaggac
     3541 aaggcccggt tgtacgggca ggcgaatcaa gcggcgatcg agcagatcgc gaccctggtt
     3601 gactcgctgg ggatcgagtg cgggttcacc cgtgctccgg cctacaccta cacgcgtgat
     3661 gcgggtcagc gctcgagtat tcaggcggag gtgtccgccg cgcagtcgct ggggttgccc
     3721 gcgtcgttca ctcaggacag cgagttgcct tatccgattg acgcggcggt gcggttcgag
     3781 gaccaggcgc attttcaccc tcgtcggtac acgctgggac tggcctcggc cattgaggcg
     3841 gccgggggcg cgattttcga gcagtctcgg gtgttggaca tcgacgagcg caatggcgct
     3901 gtgctggtcc agaccgccgg tggccaggtg cgggcccggg cggcggttgt cgcgacgttg
     3961 ttgccgtttt tagacattgg tggatacttc gccaaggttc atcccgcgcg gtcctatgcg
     4021 ctgagcgtgc gctgcccggg atcggtcccg gctgggatgt acctgtcgat cgatccccct
     4081 acccggtcag tgcggccggt tgacatcgat ggagcggtcg gtctggtcat tgagggcagc
     4141 ggccacaagc cagggcagac cgaggacacc gagcgttact acaccgacct ggaagcctgg
     4201 gctcgggaga cctttgaggt cgaggctgtg gaatatcgat ggtcagcgca ggattacgtc
     4261 agcgttgacg aggttcccta catcgggcgc tgtccccgca ccgaggcggt ctatgtcggt
     4321 actggttata agaagtgggg catgaccggg ggcaccgtcg ccggaatgat catcactgat
     4381 ctcatcggcg gtcgggataa tccgtggctg gaggtcttcg acgctactcg ggtgggcacc
     4441 gggcaggccg cgatgaaatt cgtcagggaa aacgcctcgg tggggatgca cttcgtcaag
     4501 gatcgcttgg agcggctgcg cgctggacag ctcgctgacc tcgcgcccgg caccggtggg
     4561 atggccaagg tcgagagcgg aaccgtcggc gcctaccggg acacctccga gaagatccac
     4621 gcagttagca tcacctgcac ccacctgggc tgcacactga aatggaaccc ggctgagatc
     4681 tcctgggact gtccctgcca cggttcgcgc ttcacctaca ccggggaggt gatcgaaggc
     4741 cccgctactc agcccctaga gcagatcccg gtggagaacc tcgattgagc cggttgcgtg
     4801 cttctctcga cgcggtgata ccgatcttgt catcaggcgg gtagctcaag actgggcatg
     4861 cagtgaggag gcatctgtga ggattcctcg gctcagcgcg caccgaccgt cccacgacca
     4921 gcactgtgaa gtgtctttgt ggtcactagc atcgagctac tcgtgccgtg agtcatcacg
     4981 ctgttgtctg cttgtcgtaa ccaatggtcg cgctattcgc tggttcaact tggtgacgtt
     5041 ggagaccaag aggcttatgc gaaaacagtt ctgaaggagt ttagcgttct cgcgtgtcgt
     5101 tactcataga gcaatggtcc cagcgggaga atttgaaggc tacgccaata gtcttcacac
     5161 ccggagggac cattgccagg tcaggctact acgggactca cgtccgagca attcgacgaa
     5221 ctcgttgagc gtgtcgggga gcgcatcgtt tgggattatg gacgaggacg gccacgggaa
     5281 ctgacgctgc accaggcggt caaagccgtc gtcatgtact tccgcaccaa c
//
LOCUS       DASVXZ010000500         3372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_233672, whole genome shotgun sequence.
ACCESSION   DASVXZ010000500 DASVXZ010000000
VERSION     DASVXZ010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233672"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VF788_10395"
     CDS             <1..548
                     /locus_tag="VF788_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HEX8934579.1"
                     /translation="PRPDAAERFRFTFPRQRRDRRLCLADFYRPRQAALDAGEVDVLP
                     LHLVTMGQAIADYAAELFAKDAYRDYLEVHGLGVQLTEALAEYWHRRIREELRFASGA
                     AVAEDDPTEVEEFFRLGYRGARYSLGYGACPELEDRAKIVALLQPERIGVTLSEEFQL
                     HPEQSTDAIVAHHPEAKYFNA"
     gene            561..824
                     /locus_tag="VF788_10400"
     CDS             561..824
                     /locus_tag="VF788_10400"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020638281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEX8934580.1"
                     /translation="MKTFDQLFVELSDRAKTRPAGSGTVAALDDGVHAQGKKVLEEAG
                     EVWIAAEHESDERLAEEISQLLYRVQVLMLGRGISTADVYRYL"
     gene            864..1709
                     /gene="hisG"
                     /locus_tag="VF788_10405"
     CDS             864..1709
                     /gene="hisG"
                     /locus_tag="VF788_10405"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEX8934581.1"
                     /translation="MLRVALPSKGTLAAPASEMLTEAGYRQRHDPKDLTVLDTVNEVE
                     FFFLRPRDISVYVGSGELDLGITGRDLVLDSEAPVTERLALGFGGSSFRYAAPMGRDW
                     KVGDLEGLRVATAYPRLVKADLARHGVRVTLIQLDGAVEISVQLGVADAIADVVGSGR
                     TLRQHGLATFGDTICTSEAVLVERSEAEPSPERAQLVARLQGVVFAQQYVMLDYDCPR
                     ALLDEAIAITPGLESPTLAPLADSQWVAVRAMVPRRDANQIMDELSACGAKAILASDI
                     RSCRF"
     gene            complement(1772..2689)
                     /locus_tag="VF788_10410"
     CDS             complement(1772..2689)
                     /locus_tag="VF788_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005451492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEX8934582.1"
                     /translation="MTETLTGGPLDTTTGIAPRRRPALSPSRAADFKQCPLLYRFRVV
                     DRLPETPSRLQVRGTVVHAVLERLFALPPDRRDLDAGRGLVDPAWHDVLAGSPELAVL
                     FAGAGDSEQAEWLDSARDLVDAYFALEDPRLVNPEACELLVEAELAASDAGECEPLLL
                     RGYIDRLDVASSGEIRVVDYKSGTAPREVFEAKALFQMKFYALALLRIRGVVPRQLRL
                     LYLADRQVLSYTPDEAELIRFERTLVAIWSAIQRAARTGDFRPSPSRMCDWCDHKPCC
                     PAFGGSPPPYPGWPDPSGAGAQSARDRAE"
     gene            2764..>3372
                     /locus_tag="VF788_10415"
     CDS             2764..>3372
                     /locus_tag="VF788_10415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HEX8934583.1"
                     /translation="MTRASGPFQPGDRVQITDPKGRMHTVVLEPGALFHTHRGALAHD
                     DLIGLPEGSVITSAAGTQYLALRPLLADYVLSMPRGAQVIYPKDAAQILMWGDIFPGA
                     RVLEAGAGSGALTCSLLQAVGEHGRVLSYEVRADHAEHAVANVDRFFGAAVPNWELRV
                     ADLATHPADQPVDRVVLDMLHPWEALPTVSDALVAGGVLTVYV"
BASE COUNT          562 a         1100 c         1147 g          563 t
ORIGIN      
        1 agccccggcc ggacgcggcc gagcggttcc gcttcacctt tccccgccag cgccgggatc
       61 ggcggctgtg tctggccgac ttctaccggc cccggcaggc ggcgctggac gccggtgagg
      121 tggacgttct gccgttgcac ctggtgacca tggggcaggc gatcgccgac tacgcagccg
      181 aactgttcgc caaggacgcc taccgggatt acctcgaggt gcacggcttg ggggtgcagc
      241 tgaccgaggc cttggctgaa tactggcacc gccggatccg ggaggagttg aggttcgcct
      301 ctggtgccgc ggtggccgag gacgacccca cggaggtgga agagttcttc agactggggt
      361 accgcggcgc ccggtattcg ctgggctacg gtgcctgccc ggaactcgag gatcgcgcga
      421 agatcgtcgc gctgctgcag ccggagcgga tcggagtgac gctgtccgag gagttccagc
      481 tgcatcccga gcagtccacc gacgctatcg tcgcgcacca cccggaagcg aagtacttca
      541 atgcctgagc ggggccgcct gtgaagacgt tcgaccagct gtttgtcgag ctcagtgacc
      601 gagccaagac ccgcccagcc ggttctggca ctgttgcggc gctggacgac ggggtgcacg
      661 cgcaaggcaa gaaggtgctc gaggaggccg gtgaggtgtg gatcgcggct gagcacgagt
      721 ccgacgaacg cttggccgag gagatctccc agctgctcta ccgggtgcag gtgctcatgc
      781 tcggccgagg catcagcacg gccgacgtct accgctacct gtgaggtgcg atgaacgact
      841 tatcgacgaa tggggggccg aagatgctgc gggtcgcgtt acccagcaag ggcaccctgg
      901 ccgcacccgc ctcagaaatg ctcaccgaag ccggttaccg acagcggcat gaccccaagg
      961 acttgacggt cctcgacacc gtcaacgagg tggagttctt cttcctccgg cctcgtgaca
     1021 tctccgtcta cgtgggttca ggtgagctgg acctggggat caccggccgg gatctggtgc
     1081 tggactccga ggcaccggtg accgagcggc tcgcgctcgg attcggcgga tcctccttcc
     1141 gatacgccgc gccaatgggc cgggactgga aggtcggtga tctggagggg ttgcgggtcg
     1201 ccaccgccta cccccggctg gtcaaagcag acctggcccg acacggtgtt cgcgtcaccc
     1261 tgatccagct cgacggtgcg gtggagatct ccgtgcagct gggagtggcg gatgcgatcg
     1321 ccgacgtggt cgggtctggc cgcaccctgc gccagcatgg tctggcgacc ttcggggaca
     1381 cgatctgcac ctcagaagcg gtgctcgtgg agcgatccga ggcagagcca tccccggaac
     1441 gggcgcaact tgtcgcgcgc ctgcaggggg tggtgttcgc tcagcagtat gtgatgctcg
     1501 actacgactg cccgcgtgcc ctcctggatg aggcgatcgc catcactccc ggactggaat
     1561 caccgacatt ggccccgctg gccgattccc agtgggtcgc ggtgcgtgcg atggtgcccc
     1621 gtcgggacgc taaccagatc atggacgagc tgtccgcctg cggcgccaag gccattctgg
     1681 ccagtgacat ccggtcctgc cgcttctaga ggcggagccc gatcaacgag ccatatcctt
     1741 accccgatgg cgccgcgagc aggcgcagcg atcactccgc ccggtcccgc gcgctctgcg
     1801 cgccagctcc ggatggatcc ggccagcctg ggtagggggg agggctgccg ccgaacgcgg
     1861 ggcagcacgg tttgtgatcg caccagtcgc acatccggct gggactggga cgaaagtcgc
     1921 cggtgcgggc ggctcgctgg atcgctgacc agatcgcgac cagggtgcgc tcgaagcgga
     1981 tcagttccgc ctcatctggg gtatagctca gcacctgtcg atctgcgagg tacaacagcc
     2041 gcaactggcg cggcacaact ccacggatcc gcagcagagc gagcgcgtaa aacttcatct
     2101 ggaacagagc cttggcctcg aagacctccc gtggagcggt gccagacttg tagtccacta
     2161 cccggatctc cccggaggaa gcgacgtcga gccggtcgat gtaaccccgc aacagcagtg
     2221 gctcgcactc cccagcgtcg ctggccgcca gttctgcttc cacgagcagc tcgcaagctt
     2281 ccggattgac caaacgaggg tcctccaggg cgaaataggc atcgacaaga tcgcgcgcgg
     2341 aatcgagcca ctcagcctgc tcggaatccc cggcacctgc gaacagcacg gccagctccg
     2401 ggctgccggc caggacgtca tgccaagccg gatcgaccaa accacgtccg gcatcgaggt
     2461 cccgccggtc cgggggaagt gcgaacagcc gctccagtac cgcgtgcacc acagtgccgc
     2521 ggacctgcaa ccggctcggt gtctcgggta ggcggtcgac cacccggaac cggtacagca
     2581 gcgggcattg cttgaagtcc gctgcccgcg agggagacag agctggtcgc ctgcgtggcg
     2641 caatgcccgt ggtcgtatcc agtggtcctc cggtcagggt ctccgtcatg gctggcaggg
     2701 taggcgagtc caccgacagc gctgcgcacg cggcctggtg gtggtctgcc accatgacct
     2761 gtcgtgactc gtgccagcgg accgttccaa cccggtgatc gggtgcagat caccgacccc
     2821 aaaggacgca tgcacacagt tgtgctggag cctggcgcgc tgttccatac ccaccgcgga
     2881 gcccttgccc acgacgacct gatcgggttg cccgagggca gcgtaatcac ctccgcggct
     2941 ggaacgcagt acctcgcgtt gcgcccgttg ctggccgact acgtgctctc catgccacgc
     3001 ggcgcgcagg taatctaccc aaaggatgct gcccagatcc tgatgtgggg cgacatcttc
     3061 cctggtgcga gggtgctcga ggccggtgcc ggatccgggg cactgacctg ctcgctgctg
     3121 caagcggtcg gggagcacgg cagagtgctc tcttacgagg tgcgtgctga ccacgccgag
     3181 cacgctgtgg ccaacgtgga tcggttcttc ggtgccgcgg tgcccaactg ggagttgcgc
     3241 gtggccgacc tcgctaccca cccggctgat cagccagtgg accgggtggt gctggatatg
     3301 ctgcatccgt gggaggcgct gccaacagtg tcagacgcgc tggtcgccgg gggcgtgctg
     3361 accgtctatg tg
//
LOCUS       DASVXZ010000501         1520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1756019, whole genome shotgun sequence.
ACCESSION   DASVXZ010000501 DASVXZ010000000
VERSION     DASVXZ010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1756019"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..605
                     /locus_tag="VF788_10420"
     CDS             <1..605
                     /locus_tag="VF788_10420"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sphingosine kinase"
                     /protein_id="HEX8934584.1"
                     /translation="LASALSIPADPVDAARHVAGALRSGQRRKIDLGRIEGGAGFATV
                     LCTGFDASVNARANVMRWPPGPRRYDLAVLAELAALMPRPVRVHAGDTEVELEAILVA
                     VGNGPCYGGGLRMCPDAALDDGLLDVIVIGAVSRRRLLRVFPRLRLGGHVHEPEVTVL
                     RAADVHIDGHHGWPVYADGEPQGSLPVTAHCEPGALTVVA"
     gene            698..1264
                     /locus_tag="VF788_10425"
     CDS             698..1264
                     /locus_tag="VF788_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX8934585.1"
                     /translation="MMHNERRHSGGRRFQRRDHPIRGERRGRGRVARGDVRAATLILL
                     AEQPMHGYQLMQAMAERTGGAWQPSPGAIYPTIAQLEDEGLVIIEAEGGRKLVSLTAA
                     GRAYLDDPDHGVTDPFAAITASDAGTPSLRTALFEVHSAAKSVAINGTNAQVAAVQSI
                     LADARRALYLILAEGSGPPAQASENESA"
     gene            1308..>1520
                     /locus_tag="VF788_10430"
     CDS             1308..>1520
                     /locus_tag="VF788_10430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX8934586.1"
                     /translation="MTIPPAEAYAAARRRIALPRLDEFAGGLSFELDPFQRQACEALE
                     TGHGVLVCAPTGAGKTVVGEFAVHLAL"
BASE COUNT          254 a          492 c          520 g          254 t
ORIGIN      
        1 acctggcatc ggcgttaagc attcccgccg atccggtcga cgccgcccgg catgtggccg
       61 gcgcgcttcg ctccggccag cggcggaaaa tcgacctggg ccggatcgag ggtggagccg
      121 gcttcgccac ggtgttgtgc actggattcg atgcatcggt gaacgcacgg gctaacgtga
      181 tgcgctggcc ccccgggcca cgcaggtatg acctggcggt gctggccgag ctcgccgcgt
      241 tgatgcctcg gccggtgcgg gtacacgctg gtgacaccga ggtggaactg gaagccatcc
      301 tggtcgcggt cggcaacgga ccctgctacg gcggcgggtt gcggatgtgc ccggatgccg
      361 cgctggacga cggcctgctc gatgtgatcg tcatcggcgc ggtgagcagg cgacggctgc
      421 tgcgggtgtt tccccggcta cggcttggtg gtcacgtcca cgaaccggag gtcaccgtcc
      481 tgcgggcagc ggatgtgcac atcgacggtc atcatgggtg gccggtctat gccgatgggg
      541 aaccgcaggg ttccctaccg gtgaccgcgc attgtgaacc gggtgcgctc accgtcgtcg
      601 cctgaaactc gcgttgagaa gagccggccg cttctgagtt gcatcacgat atatcacgtg
      661 ctattttgat agtgtcttca acacaaggag gttcgcaatg atgcacaacg aacgaagaca
      721 cagcggcgga cgccgcttcc agcgccgtga ccatcccatc cggggggagc gacgcggccg
      781 cggcagggtg gcacgcggtg atgtccgcgc tgccactctg atcctgctcg ctgagcagcc
      841 gatgcacggc taccagttga tgcaggcaat ggccgagcgc actggcgggg catggcagcc
      901 cagccccggt gcgatctacc caaccatcgc ccagctagaa gacgagggac tggtcatcat
      961 cgaggctgag ggtggacgca aactcgtgtc cctcaccgcg gcgggacggg cctatctcga
     1021 tgatccagac catggcgtga ccgacccgtt cgcggcgatc accgcctccg acgccgggac
     1081 acccagcttg cgtaccgcgc tgttcgaggt acacagtgcc gccaagtcgg tcgccatcaa
     1141 cggtacgaac gcccaagttg cggcggtgca gtcgatactc gccgacgcgc ggcgggcgct
     1201 ctacctgatc cttgccgagg gctccggccc gccggctcag gcatcagaga atgagtccgc
     1261 ctaggaccat cacgatgacc cgggctccga tgtgacagcc tgggacagtg accatacctc
     1321 ccgccgaggc gtacgcagcg gcccggcggc ggatcgccct acctcgactc gacgagtttg
     1381 ccggcggtct aagcttcgag ctagacccct tccagcgcca agcctgcgag gcgctggaaa
     1441 ctgggcatgg cgtgctggtg tgcgcgccca ccggtgcagg caagaccgtg gtcggggaat
     1501 tcgcggtgca cctggcgctg
//
LOCUS       DASVXZ010000502         6413 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1756104, whole genome shotgun sequence.
ACCESSION   DASVXZ010000502 DASVXZ010000000
VERSION     DASVXZ010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6413
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1756104"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..692)
                     /locus_tag="VF788_10435"
     CDS             complement(72..692)
                     /locus_tag="VF788_10435"
                     /inference="COORDINATES: protein motif:HMM:NF022995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoglobin family protein"
                     /protein_id="HEX8934587.1"
                     /translation="MNQFMLQLGIILEPSLTEPDAPMGRHEAAEFHPYAKFAGFGPKA
                     ASILRGTGPLLGPAAGGVVTLAYDYLLSRPESAGYFQDASHLAQRKMTLKGWWTRTTT
                     KPMDGDFHSYMSRVADAHVKDGGTHPHVVIPADLTIALMGWVEMRVMTALNTVAPGPD
                     GDYVFGQLPEPPEAAAVGQAWMRMLTLQLGILLKPYLASPAAPALA"
     gene            complement(711..1175)
                     /locus_tag="VF788_10440"
     CDS             complement(711..1175)
                     /locus_tag="VF788_10440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934588.1"
                     /translation="MTTGNQTDEAREVENYDQLVTPEFAPLADFAGFGVYEAVAIQET
                     GKDIAALIDGIPEAITRYLMTRPESVSLMGGSDPPIREPLIKEWLDRTIAGPFDGGLA
                     GFVREISHIGDKEVTFPGVQIPLPPQLVLALAAWLQGEILEAMGKTCDLATV"
     gene            complement(1471..2601)
                     /locus_tag="VF788_10445"
     CDS             complement(1471..2601)
                     /locus_tag="VF788_10445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HEX8934589.1"
                     /translation="MPAPLDTLTARLARARAATRTAGLDVLLLTPSPDLRYLLGIGGE
                     SHERLTCLVLPADGDPVVVVPALERPGLDGTPVLGLGLEIAEWTDGDDPYALVAALLC
                     RSGSTVARAAVGDAMPAAHVLALREALPGCAQELASTVLAPLRTRKDDAEIAALVAAG
                     QAIDRVHARMGEWLQVGRTEAQVGADIAAAIVAEGHTAAAFVIVGSGPHGASPHHDVS
                     GRVVQSGDVVVVDIGGPTPEGYFSDCTRTYSMGEPAHADVATCYAVLQAAQDAAVAAV
                     APGTTAEQVDAAARAPITDAGFGEQFIHRTGHGIGLEVHEQPYIVAGNDLVLEAGMAF
                     SIEPGIYLPGRWGARIEDIVVVEGHGARRLNHRPRELAILPV"
     gene            2652..3602
                     /locus_tag="VF788_10450"
     CDS             2652..3602
                     /locus_tag="VF788_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006240466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease"
                     /protein_id="HEX8934590.1"
                     /translation="MDAPLLLIDAASLYFRAYYGVPASITAPDGTPVNAVRGFTDMIA
                     RLIELRHPCRLIACQDLDWRPAFRVAAIPSYKAHRVAEQTGSGSPDVEEVPDTLSPQV
                     PLIFEVLAAAGLATAGAAGYEADDVIGALAAAECRDPVEVVSGDRDLFQVVRTAPTPV
                     RVIYVGRGLAKAEVIGAPELATRYGLPETGAGPAYAGLAALRGDPSDGLPGVPGIGEK
                     TAATLISRFGSVEGLLAALDDPSSALASGVRAKLRAARDYLELAPGVVRVATDAPVQQ
                     DRDDTLPSAPADPVRLTTLQRTWGLGSAVDRLVAALRAQR"
     gene            complement(3593..5155)
                     /locus_tag="VF788_10455"
     CDS             complement(3593..5155)
                     /locus_tag="VF788_10455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HEX8934591.1"
                     /translation="MNTIGEYDYIVVGGGSAGCVLAARLSEDPSVTVCLLEAGPSDVD
                     DQKILRLEQWPQLLGSRYDWDYPIEPQTNGNSFVRHSRAKVLGGCSSHNSCIAFWPPR
                     EDLDEWAAMGCRGWSANECWPLISRLENNDGPGEHHGRVGPVILRQIPPHDPCGVALL
                     ASAAAVGLPTVHFNEGVTVTEGAGFFQINADENNDRVSSSRGYLHPIMCQRPNLAVRT
                     NAWATRVLFDRRRKAIEVEYLDSGLFGYRTVQTRREVILCAGAIDTPKLLMLSGIGPA
                     GHLRDIGIDVLVDNPAVGSNLDDHVEGLVMWEASRPMVTRSTQWWEIGVFARTDPGLD
                     RPDLMMHYGCVPFDLHTVRWDYPTTSNGFCLTPNVTRGRSRGTVRLRSRDFRDRPMVD
                     PRYFTDSDGHDMAVMLAGITLARRIAAQPTLRAWVERELVPGPDAVTDDELSDYTRKT
                     HNTVYHPAGTARMGAADDPEAVLDPQLRVKGVTGLRVADASVMPFLPAVNPNITVMMI
                     GEKAGDLLAAQR"
     gene            complement(5224..>6413)
                     /locus_tag="VF788_10460"
     CDS             complement(5224..>6413)
                     /locus_tag="VF788_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA helicase"
                     /protein_id="HEX8934592.1"
                     /translation="GLAGYADAMVCHLGDFAEYARLRRQISERERALARQGGAARRVE
                     VSESLARLGRGDVIAVPGGRRAGLAVVLEAGEGPSEDPRPLVLTEDRWAGRLSIVDFP
                     TPVQALGRMRLPKRVEYRVPRVRRDLASALRETGIAIPPRSRRRSEAADDAELAALRR
                     ALRAHPCHGCDDREAHARWAERYDRLDRETEAMRQQVAATTHSLARTFDRIRALLTER
                     GYLDGEQLTEPGRALARLWSETDLLTAECLRHRIWEGLGPAELAAVISVLVYESRGDT
                     PTPRVPSGPVSDALVATVRLWAELEADERRHRLERTREPDLGFAWPVYRWARGESLSA
                     VLLAAENNGVELSAGDFVRWCRQVVDILDQVRGVTGEATASGAAAAAAVRALRRGVVA
                     LGT"
BASE COUNT         1092 a         2193 c         2063 g         1065 t
ORIGIN      
        1 cgcgggttgc gcagagatga gatcggcgtc catgtcgacc ttgacgtgga cgccgagcgc
       61 agagcaaacc gtcaagcgag tgccggcgcg gcgggcgatg cgaggtaggg cttgagcagg
      121 atccccagtt gcagggtcaa cattcgcatc cacgcctgtc ccaccgccgc tgcctcgggc
      181 ggttcgggca actgcccgaa tacgtaatca ccatcgggac ccggagcgac ggtgttcaac
      241 gccgtcatga ccctcatctc cacccatccc atcagtgcga tggtgagatc tgccgggatg
      301 accacgtgcg gatgcgtacc accgtctttg acgtgggcat cggccacccg ggacatatag
      361 gaatggaaat cgccgtccat cggcttggta gtggttctgg tccaccaccc cttgagtgtc
      421 atctttcgct gcgcgagatg cgaggcatcc tggaaatatc cagccgattc tggacgcgaa
      481 agaagataat catacgcgag agtgactacg ccacctgcgg ctggtcccag aagtgggccg
      541 gtcccgcgca ggatcgatgc tgctttgggg ccgaaacccg caaatttcgc gtatggatgg
      601 aactccgcag cttcatgacg ccccatgggt gcgtccggtt cggtcagact cggctcaaga
      661 atgattccca gctgaagcat gaactggttc atccatgcgg cgccggcggc ctacacggtg
      721 gcgagatcac aggtcttgcc catggcctcg agaatctctc cctgcaacca tgcagcgagg
      781 gcaaggacga gttggggcgg aagcggtatc tgcaccccag gaaaggtcac ttccttgtcc
      841 ccgatgtggc tgatctctcg gacgaagcca gccaggccac cgtcaaaagg tccagcgatt
      901 gttcgatcca accattcctt gatcagtggc tccctgatgg gtggatcgga tccgcccatc
      961 agggacacgg actccggacg cgtcataagg tatctcgtta tagcctccgg aatgccgtcg
     1021 atcagagctg cgatatcctt accggtctcc tgaatggcca ccgcctcgta cactccgaac
     1081 ccggcgaagt cggcgagcgg tgcaaactcg ggtgttacta gctgatcgta attttcgacc
     1141 tcgcgggctt cgtcggtctg gttccctgtg gtcatgatca cgctgcctct caggcggacg
     1201 aacaacgctc gggaggggct ggaacctgga catgatgcta cggccagatg ccctcttgct
     1261 gacatttccg accatagcga gcaggttgtt acaccattat ttaatcgatg tgactaatca
     1321 tgatttgacg ttaatcctcc gttgctgatt cctcacctcg acgcaccggc gccaggaggt
     1381 ttccagaact cgcggaggct gctcgtctcc cagcaggcag gatcaccgga caccacatgc
     1441 tccaggtggc cgccgcgagg tagttagtgg ttataccggc agtatcgcca gttcgcgagg
     1501 gcggtggttg agccgcctcg caccatgccc ttcgaccacc acgatgtcct cgatacgggc
     1561 cccccaacga cccggcaggt aaatacctgg ctcgatgctg aatgccatcc cagcttcgag
     1621 caccaggtcg ttaccggcca cgatgtaagg ctgctcgtgc acctcgagcc cgattccatg
     1681 accagtccgg tgaatgaact gctcgccgaa accggcgtcg gtgatcgggg ctcgggcggc
     1741 ggcgtcgacc tgctccgcag tcgtccccgg cgcgactgcc gccaccgcgg catcctgcgc
     1801 agcctgcagc accgcgtaac acgtggcgac gtcagcgtgg gccggttcgc ccatgctgta
     1861 ggtgcgggtg cagtcggaga agtagccctc cggcgttggt cccccgatgt cgacgacgac
     1921 cacgtccccg gactgcacca cccggcctga gacatcgtgg tgcgggctgg ccccgtgcgg
     1981 accggaaccg acgatgacga acgctgccgc ggtgtgcccc tcggccacga tcgcggcggc
     2041 gatgtcggca ccgacctgtg cctcggtgcg cccaacctgc aaccactccc ccatccgcgc
     2101 gtgcacccgg tcgatggcct gccctgcggc caccagggca gcgatctcgg cgtcgtcctt
     2161 acgcgtccgc agcggcgcca gcaccgtcga cgccaactcc tgcgcacaac caggtagcgc
     2221 ttcacgcagc gccagcacat gcgcggcggg catcgcatct cccacggcgg cacgagccac
     2281 ggtggacccg gacctgcaca acagcgcggc gaccagggcg tagggatcgt caccgtcggt
     2341 ccactcggcg atttccagac cgagtccgag caccggagtg ccatccaacc ctggccgttc
     2401 cagtgctggt accaccacca ccggatcacc atcagcgggt agcaccagac aagtcagccg
     2461 ctcatgggat tcaccgccta tccccagcag gtagcgcagg tcagggctgg gcgtgagcag
     2521 caggacgtcc aggccggcgg tcctggtggc ggcgcgcgcg cgggcaagac gggccgtgag
     2581 ggtgtcaagt ggggcgggca caccgcaagc ctacgaccag ccgtggacgg aagctggcac
     2641 gctctgcgct tatggacgcg cccctgctgc tgatcgacgc cgcgagcttg tacttccggg
     2701 cctactatgg ggtcccggca tcgatcaccg cgccggacgg tacaccggtg aacgcagtgc
     2761 ggggcttcac cgacatgatc gctcggttga tcgagctgcg ccatccttgc cgcctgatcg
     2821 cctgccagga tctggactgg cggccggcct tccgggtggc ggcgatcccc tcctacaagg
     2881 cacatcgggt cgccgagcag accgggtcgg gctctcctga cgtcgaagag gtgcccgaca
     2941 cactgagccc acaggttccg ctgattttcg aggtgctggc cgccgccggg ctggcgaccg
     3001 ccggcgcggc agggtacgag gccgatgatg tgatcggcgc gctcgcggcc gctgagtgtc
     3061 gtgacccggt cgaggtggtc agcggcgatc gggacctgtt tcaggtggtg cgtaccgcgc
     3121 cgacccccgt gcgggtgatc tatgtcgggc gggggctcgc caaggcggag gtgatcggtg
     3181 cccccgagct cgcgacccgc tacgggctac ccgagaccgg tgccggcccc gcctatgcgg
     3241 gtctggccgc actgcgcggc gacccgtccg acgggctgcc gggggtgccc ggtatcggcg
     3301 agaagactgc ggccactctg atcagccggt tcggctcagt tgaaggcctg ctcgcggcac
     3361 tggacgatcc cagctcggcg ctcgcgtcgg gggtccgcgc caagctacgg gccgcccggg
     3421 attacctgga gctggcccca ggcgtcgtac gggtggccac cgacgctccg gtgcagcagg
     3481 atcgcgacga cacgctgccc agtgctcccg ccgatcccgt tcggctcacc acgctccagc
     3541 gcacctgggg cctgggcagc gcggtggacc gcctcgtcgc ggcgctgcgg gctcagcgct
     3601 gagcggcgag gaggtcgcca gccttttctc cgatcatcat gacggtgatg ttcgggttga
     3661 cggctggtag gaagggcatg accgaagcat cggccacgcg caaccccgtc acgcccttga
     3721 cccgcagctg cgggtcaagc acagcctcgg ggtcatccgc cgcacccatc ctggccgtgc
     3781 ccgcggggtg gtagacggtg ttgtgcgtct tgcgggtgta gtcgctgagc tcatcgtcag
     3841 tgacggcatc tggcccgggc actagctcgc gttcgaccca ggctcgcaat gtcggctgtg
     3901 cggcgatccg gcgcgcgagg gtgatcccgg cgagcatcac ggccatgtca tggccgtcgg
     3961 agtcggtgaa gtagcgagga tcgaccatcg gccggtcccg gaagtcacgg gaccggagtc
     4021 ggaccgtccc gcgggagcgg ccccgggtga cgttgggtgt caggcaaaag ccgttggacg
     4081 tggtcggata atcccagcgc acagtgtgca gatcgaacgg cacgcaaccg taatgcatca
     4141 tcaggtctgg acgatcaagt ccagggtcgg tccgagcgaa cacgccgatc tcccaccact
     4201 gtgtggaacg agtgaccatc ggccgtgacg cctcccacat caccaggcct tcgacgtgat
     4261 cgtccaggtt cgatccgacg gcggggttgt cgacgagcac atcgatgccg atgtctcgga
     4321 ggtgccccgc cggcccgata ccggagagca tcagcaactt gggggtatcg atcgccccgg
     4381 cgcacaggat tacctcacga cgggtttgga ccgtgcggta cccgaagagg ccggaatcta
     4441 ggtactcgac ttcgattgcc ttcctgcgcc ggtcgaagag cacccgcgtg gcccaggcat
     4501 tggttcgcac ggccaggttg ggtcgctggc acatgatcgg gtgaagataa ccgcgtgagg
     4561 acgacacgcg gtcgttgttc tcatcggcgt tgatctggaa gaagccggcg ccctcggtga
     4621 ccgtgacgcc ctcgttgaag tgcacggtcg gaagcccgac tgcggccgcc gacgccagca
     4681 gcgccacgcc gcacgggtca tgcggcggaa tctggcgcag tatcaccggg ccgacccggc
     4741 cgtggtgctc gcccgggcca tcgttgttct ccaatctcga gatgagcggc cagcattcgt
     4801 tcgcgctcca gcccctacac cccatcgccg cccactcgtc gaggtcctcg cggggaggcc
     4861 agaaggcgat gcaggagttg tgcgacgaac agccaccgag cacctttgcc cgcgaatgcc
     4921 gcacaaagct gttcccgttg gtctgtggct cgatcgggta gtcccagtca tagcgggaac
     4981 cgagcaactg cggccactgc tccaagcgca agatcttctg gtcgtcaacg tcggatggac
     5041 cagcctcaag caggcatacc gtgaccgacg gatcctccga cagccgggcc gccagaacgc
     5101 accccgcgga accgccaccg acgacgatgt agtcgtactc tccgatggtg ttcatccctc
     5161 gatcctcacg gcaacagccg cggcgacgcc ccaccgtagc gccatcgggt tcttcgagcc
     5221 gcgctacgtc ccaagggcga ccacgccccg gcggagggca cggacggcgg ccgccgcggc
     5281 cgccccgctc gccgtggcct ctcctgtgac accgcgcacc tgatcgagga tatccaccac
     5341 ctgccggcac caccggacga agtctccggc tgagagctcg acaccgttgt tctccgcggc
     5401 tagcagcacc gccgacagcg actctccacg cgcccaccgg tataccggcc atgcgaaacc
     5461 cagatcgggc tcgcgggtac gttccagccg gtgtcgccgc tcgtcggcct ccagctccgc
     5521 ccataaccgc acggtggcca caagtgcgtc gctcaccggt ccagacggaa cccgcggagt
     5581 aggcgtatcg ccgcgtgact cgtagaccaa cactgagatc acggcggcga gctcggcagg
     5641 ccccagacct tcccaaatcc tgtgacgtag gcattccgcg gtcagcaggt cggtttccga
     5701 ccacaatcgt gccagcgccc gaccaggctc ggtgagctgc tcgccgtcga ggtacccacg
     5761 ctcggtgagc aaggcccgga tccggtcgaa tgtgcgggcc agcgagtgcg tcgtggctgc
     5821 gacctgctgg cgcattgcct cggtttcgcg gtcaagtcgg tcgtagcgct ctgcccaccg
     5881 ggcatgcgct tcccgatcgt cgcagccatg gcagggatgt gcccgtagtg cccggcgcag
     5941 ggccgccagc tcggcatcgt cagctgcctc gctgcgccgt cgggaccggg gcggtatcgc
     6001 gatgcccgtc tcgcgcagcg ccgaggcgag gtcgcggcgc acccggggaa cccggtactc
     6061 aactcgcttg ggtaaccgca tccgacctag cgcttggacc ggggttggaa agtcgacgat
     6121 cgagaggcga cccgcccagc gatcctcggt aagcaccagc ggacgcgggt cctcgctggg
     6181 accctcgcca gcttcgagca ccacggccag ccccgcccgc cggccgccgg gaactgcgat
     6241 gacatcacct ctcccaagcc gggccagcga ctccgacacc tccacccgcc gcgcggctcc
     6301 accctggcgc gccaacgccc gctcccgttc ggaaatctgc ctgcgcagcc gggcatactc
     6361 ggcgaaatca cccaggtgac agaccatcgc atcggcgtag cccgcgagtc ctt
//
LOCUS       DASVXZ010000503         2516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_681103, whole genome shotgun sequence.
ACCESSION   DASVXZ010000503 DASVXZ010000000
VERSION     DASVXZ010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681103"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VF788_10465"
     CDS             complement(<1..641)
                     /locus_tag="VF788_10465"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8934593.1"
                     /translation="MQHTLYRAAKADPGRRFPALWDKVFRRDVLWRAWEAVHRNGGAP
                     GIDQTTLAAVQEYGVTRLLDEVASELREGRYRPLPTRRVLISKPGNKAELRPLSIPAV
                     RDRIVQSACKIVLEPIFEADMLPCSFGFRPKRSPHDALQVLVDEAWRGRRWVVETDIA
                     NCFSAIPHEKLMQAIEERVCDQAVLKLLRAMLRAGVMSDGVVRGEVTGTPQGGP"
     gene            complement(982..1284)
                     /locus_tag="VF788_10470"
     CDS             complement(982..1284)
                     /locus_tag="VF788_10470"
                     /inference="COORDINATES: protein motif:HMM:NF019984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HEX8934594.1"
                     /translation="MGYKIGLGKGLRFKQGGIGVYAIPRQRSIDRFKDKVRALTRRRI
                     AVPVEELIYALTPVIRGWGMYYRRAKVRRLFNRLNMWIVRRIWGWRFKRWRKRRMA"
     gene            complement(1352..2071)
                     /locus_tag="VF788_10475"
     CDS             complement(1352..2071)
                     /locus_tag="VF788_10475"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8934595.1"
                     /translation="MSHGSASTAREGKLPSPAGSTGGDRQAGIERKASVGHSTVLDRV
                     CQQVVRQVLEPIVEPTFSEVSFGFRPKRSAYMAMRRIWGQLQAGGRWIVDADIADFFG
                     TISHDRLVALVADRVSDGKVLSLMRQILTAGVLRDGVYDSTIAGTPQGGVISPVLSNM
                     YLHVFDERMERAGVQLTRYADDWLAVCRTREEAERALASARAVLEDELGLRIHPEKTR
                     IVHVSQGGLCRTRRRAPRLPG"
BASE COUNT          477 a          919 c          659 g          461 t
ORIGIN      
        1 gggccgcctt gtggggttcc ggtcacctcg ccccgcacca ccccatcgct catcacccca
       61 gcacgcagca tcgcgcgcag cagcttgagc acggcttgat cgcagacgcg ttcctcgatc
      121 gcctgcatca acttctcatg cggaatcgcc gaaaagcagt tggcgatatc cgtctcaacc
      181 acccaccgcc tgccccgcca cgcctcgtca acgaggacct gcaaggcatc gtgcgggctg
      241 cgtttcggtc ggaatccgaa cgaacacggc agcatgtccg cctcgaagat cggctcgagc
      301 acgatcttgc aggccgactg cacgatacgg tcccgaacag caggaatcga caacggccgc
      361 aactcggcct tgttacctgg cttcgagatc aacacccgac gcgtcggcaa cggccgatac
      421 cggccctccc gcaactcgga ggccacctcg tccaacagcc gggtcacccc gtactcctga
      481 acggcggcca gggtggtctg gtcgatgccc ggcgcaccgc cgttacggtg caccgcctcc
      541 cacgcgcgcc acaggacgtc tctgcggaag accttgtccc acagcgcagg aaaccgccgc
      601 ccgggatcag ccttggccgc ccggtacagt gtatgttgca cggcaggaac cggatccatc
      661 ggaacagatc ccacaacggc gggactagcc atcacggcac tcaccggacc cctccaagtc
      721 acccatacac atcgacgaag cagcggccct tccctcaccg caggttgtgt tgtcctgtcg
      781 gctccatcgg tgtcgggtcg ggggaggcgg cagatggtga gtccgctgcc tccgcccgcc
      841 ctaccgaacc gctcgtgcag ttttcccgca agcggctctc aatgggtgta gcccttctgg
      901 cggtagtagt cgcgcatgct gggaatcagt tgcagaatgt tcaccaggct gtattcaccg
      961 taccggcggg tctccgggag gctacgccat ccggcgtttg cgccatcgtt tgaaccgcca
     1021 tccccagatt cgtcgcacaa tccacatatt gagccgattg aacaatcgac gcaccttcgc
     1081 acgccgatag tacatacccc agcctcggat gaccggggtc agggcatata tcagctcttc
     1141 cacgggcacc gcgatgcggc ggcgggtcaa cgcccgcacc ttgtccttaa accgatcgat
     1201 cgaccgctgc cgggggatcg cgtacacgcc tataccgcct tgcttgaagc gtaacccctt
     1261 gcccaatccg atcttgtagc ccaagaactc gaacccctga ggcttatgca gaaccccttg
     1321 cgatcaagat cgactactgc attctcgcag gtcagccagg taggcgcggg gcccgtcgcc
     1381 gagttctgca taagcctccc tgactgacgt gcactatccg ggttttctcc ggatgaatcc
     1441 gcaagcccag ctcgtcttcg agcaccgcgc gggcactcgc cagcgcccgt tccgcttcct
     1501 cacgagtccg gcagaccgcc agccaatcgt cggcgtacct ggtaagttgg accccagccc
     1561 gctccatccg ctcgtcaaag acgtgcaaat acatattact gagcactggg ctgatgactc
     1621 caccctgtgg cgtaccagcg atcgtgctgt catagacgcc gtctcgcagc actccggccg
     1681 tgagtatctg acgcatcaga ctcaacacct tgccgtcgga gacccggtcc gctacgagag
     1741 ccacgagtcg atcatgcgag atcgtcccga agaaatcggc gatgtcagca tcgacgatcc
     1801 atctcccgcc ggcctgcaac tgcccccaga tccggcgcat agccatatac gccgagcgtt
     1861 tcgggcgaaa cccgaaactg acctcggaga acgtcggctc gacgatcggc tccagaacct
     1921 gacgcaccac ctgctggcac accctgtcga ggacagtgga atgcccaacg gacgctttac
     1981 gctcgatccc ggcttgtcga tctccacccg tcgaaccggc tggggacggt aacttccctt
     2041 cccgagccgt tgatgcagaa ccgtgagata tcgccggtgg tcttccgcga accggtcaat
     2101 actgatccgg tccacaccac ccgcgcctcg gttttccctc acacgctccc aggcccgcgc
     2161 cacgttgcgc gggccataaa cctgtccgat cagcgagtgc gccttccgcg cccgcacacc
     2221 tgtcctcgat acctggctca ccagcgaccc gtctcgggta tcctcgcccg acgccgcctc
     2281 ggtcattgcc tcagcaacca tcagtccgac accgcctact cactcgacac cacgcctcga
     2341 ttcaccatca ccaccgtgat cccttccccg agtcgatgcc ttttgagtca ccgctcgccg
     2401 ccgcacgaac acgacggtcc caaggtttct gttgttcctt ggttcagcag taccgtggat
     2461 cactccgact tctcgcacgg catcgcttac gatttcacct cgcggcttat acgccc
//
LOCUS       DASVXZ010000504         1859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_681197, whole genome shotgun sequence.
ACCESSION   DASVXZ010000504 DASVXZ010000000
VERSION     DASVXZ010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681197"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1823)
                     /locus_tag="VF788_10480"
     CDS             complement(<1..1823)
                     /locus_tag="VF788_10480"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8934596.1"
                     /translation="MVGDGQNVEDLYPLTPMQAGMVFHSLVDPSSGAYFDQACLQLLG
                     VSNPQALGTAWQRVVDRTPVLRSRVVWDGVDEPLQLVQRQVTLPIVHHDWRELSSAQV
                     AQQQRQLLAADRAAGMDLTTAPLMRLVIARLSDDEVLLVWTSHHVLVDGWSSAAVFTE
                     VFEQYAAIVAGRRPELVARRPFRDYLHWLSLQDHNQAQQYWRQLLSGFDSPTPLPYDR
                     APVEAHRTESSHSVPIELPIEQSSRLHQMAKRHGLTVNTLVQGAWGLLLSRYSGQRDV
                     VFGTTVSGRPAELPGVEEMIGLFINTIPTRIQVPDQQHLVSWLRALQTTQVEARSFDF
                     ISLTQLQNLSDLPGGVNLFDSIVVFENYPIGDTAPENGMRIHDVHVVDTTNFPLVLTA
                     DLDQQLRLHLGYDPTLFDAATIQRLAGHLEMLLSGIAEDPNRPLTEVSMLTQAERHQV
                     LEEWNDTAQPVVPATLPELFEAQVARTPEACALVSDGVLLSYAELDARANRLAHQLVG
                     VGVGPERIVAVALPRSVELVIAQLAVVKAGGAFLPVDPAYPVERIRFMLADSRPVAVI
                     TLAGLASQLPCPVGVVVLTVDGPQALLALEQMPDRVVTDADR"
BASE COUNT          386 a          629 c          533 g          311 t
ORIGIN      
        1 cggtcagcat cggtcacgac ccgatccggc atctgctcca atgccaacag cgcctgagga
       61 ccatccaccg tcagcaccac cacgcccacc ggacacggca attgcgaagc caacccagcc
      121 agcgtgatca ccgccaccgg ccgcgaatca gccaacatga acctaatccg ctccaccggg
      181 tatgctggat ccaccggcaa aaacgcccca cccgccttca ccaccgccaa ctgcgcaatc
      241 accaattcca ccgaccgcgg caacgcaacc gcgacaatcc gctccgggcc cacacccaca
      301 ccaaccagct gatgcgccaa ccgattcgcc cgcgcatcca actccgcata cgaaagcaac
      361 accccatcac taactagagc acaagcctcc ggagtacgcg ccacctgcgc ctcaaacaat
      421 tccggcaacg tcgccggcac cactggttgc gccgtgtcat tccactcttc cagcacctga
      481 tgccgctcag cctgggtcaa catcgagact tcggtcaatg gccgattcgg atcttcagcg
      541 atcccgctaa gcagcatctc cagatgaccc gccagccgct ggatggtagc cgcatcgaat
      601 agtgtggggt catagcctag gtggaggcgc agttgctgat cgaggtcggc ggtaaggacg
      661 agggggaagt tggtggtgtc gaccacgtgc acatcgtgta tccgcatccc gttttcgggt
      721 gcagtgtcgc cgattgggta gttttcgaac accacgatgc tgtcgaacag gttgaccccg
      781 ccggggaggt cgctgaggtt ttgcagttgg gtcagcgaga tgaagtcaaa gctgcgggct
      841 tcgacttggg tggtctgcaa tgcacgtaac caggacacca ggtgttgttg gtcggggacc
      901 tggatgcggg tggggatggt gttgatgaac aggccgatca tttcctcaac accgggtagc
      961 tcggccgggc gcccggacac ggtggtgcca aacaccacat cacgctgacc gctatagcgt
     1021 gacagcaaca atccccaagc gccttgcacg agggtattca ccgtcagccc atggcgttta
     1081 gccatctgat gcaaccggct ggactgctct atgggcagct caatgggcac cgagtgcgaa
     1141 gactcggtgc ggtgggcctc caccggtgcc cggtcataag gcaacggggt cggtgaatca
     1201 aaccctgaca gcagctgccg ccagtactgt tgggcctgat tgtgatcctg aagagacagc
     1261 cagtgcaggt aatcccggaa cgggcgccgg gccaccagct caggtcgccg accggccaca
     1321 atcgccgcgt actgctcgaa cacctcggtg aatactgcgg cgctgctcca gccgtccacg
     1381 agcacgtgat gcgaggtcca caccaacaag acctcatcat cggacaagcg ggcgatcacc
     1441 agtcgcatca gcggtgctgt agtcaggtcc atgcccgcgg cccggtctgc ggccagcagc
     1501 tggcgctgct gctgtgctac ctgggctgag gacagctccc gccagtcgtg gtgcacgatg
     1561 ggcagcgtga cctggcgctg caccagttgc agcggctcgt ccacaccatc ccaaaccacc
     1621 cggctgcgca acaccggtgt ccggtccacc acccgctgcc acgcggtgcc caacgcctgc
     1681 gggttcgata ctcccaacag ctgcaaacac gcctgatcga aatacgcccc cgaggaggga
     1741 tcgaccaggc tgtggaacac catcccggcc tgcatcggtg ttagcgggta gaggtcttct
     1801 acgttttggc catcgccgac caccgcatcc accgtgggct gatccaggca ggccagcgg
//
LOCUS       DASVXZ010000505         1721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1371156, whole genome shotgun sequence.
ACCESSION   DASVXZ010000505 DASVXZ010000000
VERSION     DASVXZ010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1371156"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VF788_10485"
     CDS             <1..495
                     /locus_tag="VF788_10485"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEX8934597.1"
                     /translation="GDRRSRMVKNMWKSSLVLILPLIAASTGLIVTPLTATAMDYQAS
                     ASQALTLVNQKRANAGCGSLRVVRQLQVPAGQQSQDQAARDRVSHAGANGSTTGSRLY
                     NSGYSRWAENIAQYQSAQAAVRFWSTSPAHRSSMLDCAFKDTGLAVARSNSGRLYWTQ
                     TFGG"
     gene            1300..1452
                     /locus_tag="VF788_10490"
     CDS             1300..1452
                     /locus_tag="VF788_10490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934598.1"
                     /translation="MIESGCISSELPDLDRTDDPRGGAAAWALLTVCMVFLGVIVLTA
                     MWTTGG"
     gene            complement(1498..1644)
                     /locus_tag="VF788_10495"
     CDS             complement(1498..1644)
                     /locus_tag="VF788_10495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934599.1"
                     /translation="MIGPKHVSSELPDLDRTDDPRGGAAAWALLTVGALLLAGAVLAV
                     IWVW"
BASE COUNT          346 a          545 c          517 g          313 t
ORIGIN      
        1 ggcgatcgga gatcacgaat ggtcaagaac atgtggaaaa gtagtcttgt gctgatcctc
       61 cctctcatcg cggcgagcac aggtcttatc gtcaccccac tcaccgccac cgcgatggac
      121 taccaggctt ccgctagcca ggcgcttaca ctggtcaatc agaaacgagc caatgcgggc
      181 tgtggatctt tacgcgtcgt ccggcagctg caggtcccag ccggccaaca aagccaagat
      241 caggccgctc gcgacagggt gagccacgca ggggcgaacg gcagcacgac cggtagccgg
      301 ctgtacaatt ccggctattc tcgatgggct gagaatatcg cccaatacca gagtgcgcag
      361 gcagcggtaa gattttggtc gactagccct gcccaccgtt caagcatgct tgactgtgca
      421 ttcaaggata ctggcctggc ggtggctcgt agcaattcag gtaggctcta ctggacccag
      481 accttcggcg gctgagtgaa tttagctgca cccttagcct caccgcatct ctcgtactcc
      541 ctgaacgacc accttgagcg cgctggatgt aggccaccgc gtgctgctgg tagaccgatc
      601 gtaacgatcc acagaagtcc cgatctgtac acagcgtgtt gaggccgccc caccaagccc
      661 tacccctacg gtgtcgcccg tgagtccaac gccgatctac gaccagctcc gtggtgagcg
      721 gatcaacgct gatgttccgg caaccgggac agaaccacaa cggaaggatc accctgggaa
      781 acaccgtctt cccggcggcc cgcccagtgc ggtgacggtg tccggcctgc catcacgaat
      841 agggtctgat cgcgttgcaa gctggtcctg gttcgcgccg atcgatcccg cgagagggtc
      901 gtggggaccg caaggagccc ttccgccggc cgcccgtggg caacaggagc agccacaagc
      961 tcgtggaccg tttccgatca gtgtcggtag caccgatgag gcctcctcgg cctgacctcg
     1021 cggcagacga gtgactcgcc accgtgcacc acggtggcgg accgcactgc gtcccgctgt
     1081 cgaattcgag taaccaacta ctcgcatcgg gtcgcctatc tgtgcgctcg tctgggtgcc
     1141 ggaactcttc gttcagatag gaataacaat gggaccggga ctgcctcgac aacgaagtgc
     1201 tgagacccgg ccgaaccacc aggttgacaa cgggtatagc gttcggccac tagcgcggtg
     1261 cttccctggt ttccggggga aactagcgag ggagacgtga tgatcgagtc ggggtgcatc
     1321 tcgtccgaat tgccggatct ggaccggacg gacgatccgc ggggcggagc ggccgcctgg
     1381 gcgctgctca cggtgtgcat ggttttccta ggggtcatcg tcctgaccgc gatgtggaca
     1441 accggaggat agataggcgc tgtgccgccg ccgtcgaccg ctgattctcc acgcgcgcta
     1501 ccagacccag atcactgcca gaaccgcgcc ggcgaggagg agtgcaccca ccgtgagcag
     1561 tgcccaggcg gccgctccgc cccggggatc gtccgtccgg tccagatcag gcaattcgga
     1621 tgagacgtgc tttggtccga tcatcacttc tccttgacgc ggaaccggaa agcgaatcct
     1681 aactcatagc acgtcataaa actgcaaact ttaaggctcc c
//
LOCUS       DASVXZ010000506         2365 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_53973, whole genome shotgun sequence.
ACCESSION   DASVXZ010000506 DASVXZ010000000
VERSION     DASVXZ010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53973"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..680
                     /locus_tag="VF788_10500"
     CDS             <1..680
                     /locus_tag="VF788_10500"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8934600.1"
                     /translation="APDLPGYGGADKPDRFDYTVDGYARHLGAILETLGIRRAHLVLH
                     DFGGPWGLMWAAEHPDRFASVTLVNCGVLPGYRWHYLARIWRTLVLGEAFMRTGTLPA
                     TRLLLRHGNPRGLPRDVVERMHRDYKNPAVAFAVLRLYRATDDVVVSSVHLQPRLRSL
                     DRPALVVWGAQDPYLPVRYADRQRESFPRAEVVVLADSGHWPMIDDPVAVEQPVLRFL
                     RAVITAG"
     gene            complement(667..1470)
                     /locus_tag="VF788_10505"
     CDS             complement(667..1470)
                     /locus_tag="VF788_10505"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEX8934601.1"
                     /translation="MPAVTDPAQIAQDAAATLAERTGAPTHDIAVVLGSGWRPAADAL
                     GTPTIEMPFTALPGFATPQVIGHAGTLRSVQLGDRRILVLLGRTHSYEGHGVAQVVHG
                     VRTACAAGVRVVVLTNAAGGITDGLEVGQPVLISDHLNLTATSPLVGPRYVDLTDTYS
                     PRLRTLAKGIDPTLAEGVYAGVPGPHFETPAEIRMLRTMGADLVGMSTVLEAIAARVE
                     GVEVLGISLVTNLAAGLVAAPLNVADMLAAATDAAARMGELLRELITRL"
     gene            complement(1478..>2365)
                     /locus_tag="VF788_10510"
     CDS             complement(1478..>2365)
                     /locus_tag="VF788_10510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934602.1"
                     /translation="TPEPTQSINPQSVNPQPATPRPAARSVPLASATEATGPLEMPGQ
                     RSGQLAANPGPLPFTPATPATTHRSKRTGAGGRALLWTLAVLLFLGASVSGFGAARVV
                     TGRPALPHLGVPTAPGPSPGELLLTPRVLKVTEPDGTRPAQFTVSVPQGWPEFREQRT
                     LGNNAGTVMRFVSPDGSEVIAVERVTGGLPGGSPIAGSAGAPGQNLDQYLTAYLRKLA
                     QGLPQLVETQRQRMSGGVLEATIRTQEGGELRRTTYLRMMPASPGLWVVSVTVPTERE
                     GAGRMKLFEPVVAAFAANP"
BASE COUNT          347 a          788 c          849 g          381 t
ORIGIN      
        1 tcgcgcccga cctacccggc tacggcgggg ccgacaagcc cgatcgcttc gactacaccg
       61 ttgacgggta tgcccgtcat ctcggcgcga tccttgaaac gctcggcatc cgccgcgccc
      121 acctggtgct gcacgacttc ggtggcccgt ggggcttgat gtgggcggcc gagcacccgg
      181 accggttcgc gagcgtgacg ctggtcaact gcggtgtgtt gcccggctac cgctggcact
      241 acctggctcg gatctggcgc accctggtgc tgggcgaggc tttcatgcgg acgggcacgt
      301 tgccggcgac gcggctgctg ctacgccatg gcaacccccg cggtctgccc cgggacgtcg
      361 tcgagcggat gcaccgggat tacaagaacc ccgccgtggc gttcgccgtg ctgcgcctgt
      421 accgcgcgac cgacgacgtc gtcgtctcgt cggtgcatct ccagccgcgg ttgcgctcgc
      481 tcgaccggcc ggctctggtg gtgtggggag cccaggaccc atacctgccc gttcgttacg
      541 cggatcgtca gcgtgagagc tttccacgcg cggaggtcgt cgtccttgcc gacagcggcc
      601 actggcccat gatcgacgat ccggtcgcgg tggaacagcc cgtgctgcgg ttcctcagag
      661 cggtgatcac agccgggtga tgagctcgcg tagcagctcg cccatccgcg ccgcggcatc
      721 agtggccgcg gcgagcatgt cagcgacgtt caacggagcc gccaccaacc cggcggcaag
      781 gttggtgacc agggaaatcc ccaacacctc gacaccttcg acccgcgcgg cgatggcctc
      841 taacacggtg gacatgccca ccagatcagc gcccatcgtg cgcagcatgc gaatttcagc
      901 tggtgtctcg aaatgcggac cgggtacgcc ggcgtagacg ccctccgcca gcgtgggatc
      961 gatccccttg gccagtgtgc gcaatcgagg ggagtaggtg tcggtgaggt cgacgtaccg
     1021 cggcccgacc agcggggaag tggcggtgag gttgaggtgg tcggaaatca gcactggctg
     1081 gccgacctcg agcccgtcgg tgataccgcc ggcggcgttg gtgagtacga cgacccgcac
     1141 ccccgccgcg cacgcagtcc gcactccgtg caccacctgg gccacgccgt gaccttcata
     1201 gctgtgtgta cggccgagta gcacgaggat gcgccgatca cccagctgca ccgatcggag
     1261 cgtcccggcg tgcccgatga cctgcggtgt ggcgaatccg ggcagagcgg tgaagggcat
     1321 ctcgatagtc ggagtgccta gcgcatcggc tgctggacgc caaccactgc ccagcacgac
     1381 ggcgatgtcg tgcgtgggtg ccccggtacg ctcagcgagt gtcgcagcgg cgtcttgggc
     1441 gatctgtgcc gggtcagtca cggcgggcag cctaggtcta cgggttggcc gcgaatgccg
     1501 ccactaccgg ttcgaacagc ttcatgcgcc cggcaccctc gcgttcggtg ggaacggtga
     1561 ccgagaccac ccacaggccc gggctagccg gcatcatccg caggtaggtg gtgcggcgca
     1621 gctcgccacc ctcctgggtc cggatggtgg cctccagcac gccaccggac attcgctgcc
     1681 gctgcgtctc cacgagttgc ggcagcccct gggccagctt gcgcaggtag gcggtcaggt
     1741 attggtcgag gttctggccg ggggcaccgg ctgagccggc aatcggacta ccaccgggca
     1801 acccaccggt gacccgctcg acggcgatga cctccgagcc gtccggggag acgaaacgca
     1861 tcacggtgcc ggcattgttg ccgagtgtgc gctgctcgcg gaactccggc cagccctgcg
     1921 gaacgctgac ggtgaactgg gccggccggg tgccatccgg ctcggtgacc ttgagcaccc
     1981 ggggtgtgag gagcagctcg ccggggctgg gacccggcgc ggttgggacg cccaggtggg
     2041 gtagcgcggg ccgaccggtg acgacccgcg cggcgccgaa accgctcacc gaggcgccga
     2101 ggaacagcag tacagccaag gtccacaaga gtgctctccc tccggcgccg gtgcgtttgc
     2161 tccggtgcgt cgtagccggt gtggccgggg tgaagggcag cgggcctggg ttggctgcaa
     2221 gctgcccgct ccgctggccg ggcatctcca gaggccctgt cgcttctgtt gcgctggcga
     2281 gcgggacgga acgcgccgca ggtcggggtg tggcgggctg gggattgacg gactgggggt
     2341 tgatggactg ggtcggttcg ggcgt
//
LOCUS       DASVXZ010000507         4224 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1640572, whole genome shotgun sequence.
ACCESSION   DASVXZ010000507 DASVXZ010000000
VERSION     DASVXZ010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1640572"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1662)
                     /locus_tag="VF788_10515"
     CDS             complement(<1..1662)
                     /locus_tag="VF788_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX8934603.1"
                     /translation="MTGSPMAESEVSANGAARPKPSSGGAQEVAAASWALPLVVLIAG
                     MFMSVLDTSIVNVAIPTIQNEFGANTDDVQWVVTAYTLALGVVVPCTAWFGDRFGLSR
                     VYNLALLAFAAGSALCGLAWDLNSLVVFRIVQAIPGGILPVITLSILYRIVPRERLGA
                     AMGMYGLGVVFGPAIGPTLGGYLVEYVDWRLIFYINVPIGILGAIAAVLVLPKFPRYA
                     GRRFDVLGFVTISAGLFSLLLAVSKGESWGWNSYEVLGLLTVSVLSLALFVIIELEVT
                     EPLLDVRIFRYWAFAHSLALVGVLVVVLFGVLFYIPQFLQVVQGWGAFESGLALLPQA
                     VVMGLLMPVAGRIYDRIGPRVPVVIGLTIVAGASYLLHTITIDTTRGHVMWLLAIQAV
                     GIGLAMMPIFTSGIAAIPVDKSNIASALNNVVRNVAGALGVAGLTAILTIQRAEQMAG
                     RAALVPANTPTPHVGPPGTPDWMGPFAVYQKTTAEVFVGAIDDLFLICAALAALAALG
                     ALWLRSGPAPTVTVASSPPAAGPTKTADHVAQTDGQPPDRAVSNGV"
     gene            1760..2362
                     /locus_tag="VF788_10520"
     CDS             1760..2362
                     /locus_tag="VF788_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8934604.1"
                     /translation="MLTATDSADHRKGPRRRGDALYAAIYEATLAELTAVGYAELRME
                     HVASRARASKGSLYRRWASRAELVADAVHHAFPRHGDLPDTGSVREDLLGCLRGFADL
                     VNSPAGEAIRGLMAETIRNPDLMDAIRARFIDPGTARFLEVLRRGAVRGEVRATALTN
                     RNASLGPDLLHQHFMVHHSPIPDRVLHEIVDEVVLPLVRA"
     gene            2451..3191
                     /locus_tag="VF788_10525"
     CDS             2451..3191
                     /locus_tag="VF788_10525"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX8934605.1"
                     /translation="MEGPVAAPPAPAAQQSTDGVVSAPPGGRKLKRSTRIGLIVILIV
                     ALIAAAGFATSYFLNARNYVTTDNAQIDGDKIAVNAPASGTLLDWSATQGAALSKDQV
                     VGRIEMDGGFNKPQKSIKAPGEGTVAVDNGIVGTYVTAGTQLAVAYNLDKIFVTARVD
                     ETDVKAVRPGQVVDISVDAYPNAPLTGRVREIQGGAAAVFSLFPQSNSGGNFQKITQV
                     IPVKVGLDNVRNLDLVPGMNVTVHIHKN"
     gene            3256..3777
                     /locus_tag="VF788_10530"
     CDS             3256..3777
                     /locus_tag="VF788_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934606.1"
                     /translation="MTRTVRAIQVLTLLLVALYMGQLYAHVLELGPKRHYPPELFLRL
                     HTSLYAWYGPPLGAAIGTGALVATGALTWLVRRQRSARWFTGSAFALQVVALVIYFVR
                     VEPVNERIRALSPGQVPSDFIALRAQWDYGHALGFTLFVAVFLLLTCALLVSPTAPVR
                     TGEPSAGVPGDVR"
BASE COUNT          788 a         1423 c         1323 g          690 t
ORIGIN      
        1 cacaccgttg ctgactgcgc gatccggtgg ctggccgtcc gtttgtgcga cgtgatcggc
       61 cgtcttcgtc ggtccagccg ccggtgggga cgaggcgacc gtcacagtgg gagccggtcc
      121 ggaccgtagc cacagtgccc ccagcgcggc cagcgcggcc agcgcggcac agatcaggaa
      181 caggtcgtcg atcgctccga cgaacacctc cgcagtggtc ttctggtaga cggcgaatgg
      241 gcccatccag tcgggagtcc ctggtggacc cacatgcggg gtgggggtgt tcgcgggcac
      301 caatgcggcc cgcccggcca tctgttcagc gcgctggatg gtcaggatcg cggtaagtcc
      361 cgctaccccg agcgcaccgg cgacattgcg cacgacgttg ttgagcgcgc tggcgatatt
      421 gctcttgtcg accgggatgg cggcgatgcc cgaggtgaag atcggcatca tggccaaccc
      481 gatgccgacg gcctggatcg ccagcaacca catcacatgc ccgcgggtgg tgtcgatggt
      541 gatcgtgtgc agcaggtagg aagcaccggc gacgatcgtc aagccgatga ccacgggcac
      601 gcggggcccg atccggtcat agatccgccc tgcgacgggc atcaacaacc ccatcaccac
      661 cgcttgaggc aacagggcaa gccccgactc gaacgccccc cacccctgca ccacctgcaa
      721 gaactgcggg atgtagaaca gcacgccgaa cagcacgacc accagcacgc cgaccaaagc
      781 cagcgagtgg gcaaacgccc agtagcgaaa gatccggaca tccaacaacg gttcggtgac
      841 ctcgagttca atgatcacga acagcgccag gctcagcacg ctcacggtga gcaagcccag
      901 gacctcgtag gagttccacc cccaggactc gcccttcgac accgccagca gcagcgagaa
      961 caatccagcc gagatcgtga cgaagcccaa gacgtcgaac cgccgccccg cgtaccgggg
     1021 gaacttcggc agcaccagca ccgcggcgat cgcgcccagg attccgatcg gcacgttgat
     1081 gtagaagatc agccgccagt ccacgtactc gaccaggtac ccacccaggg tcggcccgat
     1141 cgccggtccg aacaccactc ccaggccata catgcccata gcggcgccga ggcgctcccg
     1201 tggcacgatt cggtacagaa tcgacaacgt gatcaccggc aggattcccc ccgggatggc
     1261 ctgcacgatc cggaagacca ccaggctgtt cagatcccag gccagcccgc ataacgccga
     1321 gccggcggcg aacgccagca gcgcgaggtt gtacacccgg cttagcccga atcgatctcc
     1381 gaaccacgca gtacacggca ccaccacgcc cagtgccagc gtgtatgccg taaccaccca
     1441 ctgcacgtcg tcggtgttcg cgccgaactc gttctggatg gtagggatgg ccacattgac
     1501 gatgctggta tccagaaccg acatgaacat gccagcgatc agcaccacca ggggaagcgc
     1561 ccagcttgcc gcagcgactt cctgggcgcc ccctgaactt ggtttcggcc gagcggcgcc
     1621 gttggcgctc acctcggact ctgccatcgg ggagccggtc ataaccacca ctgtgcatcg
     1681 aaacgctgcg tactctactc ctagttcact ctaacgaggg acgctaagat ggggccatac
     1741 tgactacgga gaggtacgga tgctgaccgc aactgactcg gccgaccacc gtaaggggcc
     1801 acggcggcgc ggtgacgctc tctatgcggc gatttacgaa gcaaccctcg ccgagctgac
     1861 cgcggtcggt tacgccgaac tgaggatgga gcacgtggcc agccgagctc gcgcgagcaa
     1921 gggatccctg taccggcgct gggccagccg cgccgaactg gtggccgatg cggtgcacca
     1981 cgcctttccc aggcatggcg acctgcccga taccgggagc gtccgcgagg atctactggg
     2041 ctgcctgcgc ggattcgccg atctagtcaa tagccccgcg ggggaggcga tccgtggcct
     2101 gatggcagag acgatccgta accccgacct catggacgcc atccgtgccc gcttcatcga
     2161 tcccgggacg gcccggtttc ttgaggtact ccgacgcggc gccgtccgcg gggaggtccg
     2221 tgccaccgcc ctcaccaacc gcaacgccag cctcggcccc gatctgctgc accagcactt
     2281 catggtgcat cactccccca tcccggaccg agtgctgcac gagatcgtcg acgaggtggt
     2341 cctgcccttg gtgcgggcat aactcgctcg ccttggcagg actccccaag ttaaggtacg
     2401 gcgcgtagcc tatagcttga cgctccccac ttcagacggg aggtgtgagc gtggaaggcc
     2461 cagtggcggc gccacccgca ccagctgccc aacaatccac cgacggcgtt gtgagcgcac
     2521 cacctggtgg gcgcaagctc aagcgctcca ctcgtatcgg cctgatcgtg atcctgatcg
     2581 tggcgctgat cgccgcggct ggattcgcca cgagctactt tctcaacgct cgcaattacg
     2641 tcaccaccga caacgctcag atcgatggcg acaagatcgc ggtcaatgcg cccgccagcg
     2701 gcaccctgct cgactggagc gcaacccagg gcgccgcctt gagcaaggac caggtcgttg
     2761 gccgcatcga gatggacggt ggcttcaaca agccccagaa gagcatcaag gcccccggag
     2821 aaggcaccgt ggcggtggac aacggcatcg tgggcacata tgtcaccgcg ggcacccagc
     2881 tcgccgtcgc ctacaacctg gacaagatct tcgttaccgc acgcgtcgac gaaacggacg
     2941 tcaaagcggt ccgcccgggc caagtggttg acatctctgt cgacgcgtat cccaacgccc
     3001 cgctcaccgg gcgcgtccgg gagattcagg gcggcgcggc ggcggtgttc tcccttttcc
     3061 cgcagagcaa cagcggcgga aacttccaga agatcaccca ggtcatcccg gtcaaggtcg
     3121 ggctggacaa cgtccggaac ctcgacctcg ttcccggaat gaacgtcact gtgcacatcc
     3181 acaagaactg atccgcgctg ggttgccggg tcagtgcggc gcgctacggg cgatcgggca
     3241 gtccctcatg gtggcatgac cagaactgtc cgtgccatcc aagtgttgac cctgctgctg
     3301 gtggcgctct atatggggca gttgtacgcc catgtcctgg agctcgggcc gaagcggcat
     3361 tacccaccgg agctgttcct gcggttgcac acctccctct acgcctggta cggcccgcca
     3421 ctgggagccg cgattggtac cggtgcgctc gtcgcgacgg gagcgctgac ctggctggtg
     3481 cgccggcagc ggtccgcgcg gtggttcacc ggttcggcct tcgcgctgca agtggtggcg
     3541 ctggtgatct acttcgtccg tgtcgagcca gtcaacgagc ggatccgcgc gctgtcacct
     3601 ggccaggtgc ccagcgactt catcgcactg cgggcacagt gggattacgg ccatgcgctg
     3661 gggttcacgc tgttcgtcgc tgtgttcctg ctgctcacct gtgcgctgct ggtaagtcca
     3721 accgctccag tccgcaccgg cgagccatcc gcgggggtgc cgggggatgt ccggtgaggc
     3781 agcggctact gctcgaactc ggtgtgctcg cagcactcct ggtgtggctc ctggattcgc
     3841 gcagtgggcc ggcgtcacgg ccgcgatacc ccggcacgct ggcagctcga cgctgttgat
     3901 cgtgctagcc gcatcacatg ccagccggcg gctgcggcgt caccgtgccg agttcgccag
     3961 cagtgaagat tatcgaatcg ttacctttta tgatctcatt ctaggccgaa ggagtgatcc
     4021 tgccgcgatt tagcccgaaa acacggtcgc gggcgtttta tagagggtgc gtagtgtgcg
     4081 atcgcgcgaa ggcgggtgcg caagcgtccc tccgcgggga gagggcatcg tcgagaacgc
     4141 ctgcgatctg atggtagtag ggggcatttc gtgatcaaga agcggccggt acgaccagtc
     4201 cagcttccat taacccaggc gagc
//
LOCUS       DASVXZ010000508         1641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_565200, whole genome shotgun sequence.
ACCESSION   DASVXZ010000508 DASVXZ010000000
VERSION     DASVXZ010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565200"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1619)
                     /locus_tag="VF788_10535"
     CDS             complement(<1..1619)
                     /locus_tag="VF788_10535"
                     /inference="COORDINATES: protein motif:HMM:NF013124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934607.1"
                     /translation="MTIGEDTAGPELADKVTNVVSLLDGARPPLTDPFAAGAELGRAL
                     GDRRLLLVIDDVWTTAQVEPFLIGGPTVRRLFTTRIRGILPSSAELVHVDEMGQGEAE
                     QLLTAGITDAPREAVAGLLAATGRWPVLLALVNRAVRADLTTGRRAEESLGEILQELR
                     TTGPSVLDLADADERHTAVSRTIGVSLSRLTAEQRARYLELAVFTPEVAIPVPVLVRY
                     WQATGGWSQFQVRRYCQRLAELALVSDYRRDQVILHDVVHAYLQEQTHHSRSELHRTL
                     IDAHRNLVTEQGGMSQWWQLHATQTYLWSCLPTHLQAAGLEQELLACLHHPAWLVGKL
                     EHVGPAGLEADLALPDDPLSQALGAAVRQNAHVLGPLQPPGSLAATLAIRLPDDTPTK
                     VIAEELVTRLTTPYLRAITALPDLPHPAQLRILVGHTCEVRALAVAPDGSWLASAGDD
                     RTVRIWDPITGISRHTLTGHTRGVRALAVAPDGSWLASAGDDRTVRIWDPLTGASGHT
                     LSGHTRRISALAVARNGSWLASAGDDRTVRI"
BASE COUNT          295 a          523 c          532 g          291 t
ORIGIN      
        1 cagatccgca cggtgcgatc gtcaccggct gaggccaacc aggatccgtt tcgcgccact
       61 gccagcgctg aaatccggcg ggtatgtccg cttagggtat ggccgctagc gccagtgagt
      121 ggatcccaga tccgcacggt gcgatcgtca ccggctgagg ccagccacga tccgtccggc
      181 gcgaccgcca acgcccgcac tccacgagtg tggccggtga gagtatggcg actaatgcca
      241 gtgattggat cccagatccg cacggtgcga tcgtcaccgg ctgaggccag ccacgatccg
      301 tccggcgcaa ccgccaacgc ccgcacctca caggtatggc cgaccagtat ccgcaactgt
      361 gccgggtgag gcagatcagg cagcgcagta atggcgcgta ggtatggcgt ggtcagtctg
      421 gtcaccagct cctcagcgat cactttggtc ggagtgtcgt cgggcagccg gatggccaac
      481 gtggcagcga gtgatccagg aggttgtaga ggtccgagaa cgtgcgcgtt ttgccgcacc
      541 gcggctccga gtgcctggga aagcgggtca tctggcaaag cgaggtcagc ttccaacccc
      601 gcggggccca cgtgttcaag ttttccgact agccaggcag ggtgatgtag gcatgcaagc
      661 agttcctgtt ctaggccggc agcctggagg tgggtgggga ggcacgacca caggtacgtc
      721 tgcgtggcgt gcagctgcca ccattgactc atcccgcctt gttcagtaac gaggttgcgg
      781 tgggcgtcga tgagcgtgcg gtgcagttcg ctgcggctgt ggtgggtctg ttcctgaagg
      841 taggcgtgca caacatcgtg aaggatcact tggtcgcggc ggtaatcgct gaccaatgcc
      901 agttccgcta gacgctggca gtagcgccgg acctgaaact gtgaccagcc gccagtggcc
      961 tgccagtaac ggaccaacac cggcactggg atcgccactt ctggcgtgaa caccgccaac
     1021 tccaggtagc gagcgcgctg ctcggcggtt agccgggaca agctaacccc gatcgttcgt
     1081 gacaccgcgg tgtgtcgctc gtcggcgtca gcgaggtcca gcacggaggg gcccgtcgtg
     1141 cgcaactctt gcaggatctc gcccagtgat tcttcagctc tgcgaccggt agttaggtcg
     1201 gctcgaaccg cgcggttgac cagcgcgagc agcactggcc accgcccggt ggccgctaac
     1261 aatcccgcta ccgcttcacg cggggcatcg gtgatgccgg cggtgagcag ctgttccgcc
     1321 tctccctggc ccatctcatc gacgtgcacc agctcagccg agcttggcag gatgccccgg
     1381 atgcgggtgg tgaataaccg cctcaccgtc ggcccaccga tcagaaacgg ctctacctgg
     1441 gcggtggtcc atacgtcatc gatgacaagt aacaggcgcc ggtcgcccaa cgcgcgtcct
     1501 agctccgcgc ccgccgcaaa aggatcagtc aatggaggcc gggcgccgtc tagcaggctt
     1561 accacgttgg tgaccttgtc agccaactct ggtcccgcgg tgtcctcgcc aatggtcacc
     1621 cagatcaccc cgtcagggaa c
//
LOCUS       DASVXZ010000509         4125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1461497, whole genome shotgun sequence.
ACCESSION   DASVXZ010000509 DASVXZ010000000
VERSION     DASVXZ010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1461497"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            253..1215
                     /locus_tag="VF788_10540"
     CDS             253..1215
                     /locus_tag="VF788_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEX8934608.1"
                     /translation="MGVVRSRAMRLLKVAGLAGMIAFVSTGCSVYQAFAFGWPQGVTP
                     QAERMRSLWIWATIAALAVGLIVALLIMWTVTFHRKKSNEIPRQTQYNLPLEIIYTVI
                     PFVIVAVLFYFTVTAQNFVNAKVDNPDLRVRVIGFQWNWEFQYLQERPGRGGVYQVRQ
                     ADDGEPLSTIGSSSTIPLLVVPTNRVVEYRIESTDVLHSFYIPDFLFKRDVFPHPEKN
                     DTDNVFQTTVQRQGAFVGRCAELCGTYHSMMNFEMRALPPDLFDRYLALRAQTNPQTH
                     RSYNAGEALAQLNCGELCAPEAVTTSPFDTDRTAREVRQAQGGH"
     gene            1263..1664
                     /locus_tag="VF788_10545"
     CDS             1263..1664
                     /locus_tag="VF788_10545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 4"
                     /protein_id="HEX8934609.1"
                     /translation="MRVEARIFEIITAFFFASAVIYGLWSHGEPVGSAAITLTGGLTL
                     IVGTYFRFVSRRVRMRPEDNVDAEISDGAGELGFFSPGSYWPFGMALGASVLGYALAL
                     NLWWMVAIGVALVIGTVTGLVFEYHIGPKPE"
     gene            complement(1830..3497)
                     /locus_tag="VF788_10550"
     CDS             complement(1830..3497)
                     /locus_tag="VF788_10550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016336043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEX8934610.1"
                     /translation="MSTQTTPATSGGLAARAGKTADELDQRFHLASGMRRQINKVFPT
                     HWSFMLGEIALNTFIVLLLSGTYLTLFFDPSMEDVTYNGVYTNLRGIEMSRAYASTLE
                     LSFDVRGGLFIRQVHHWAALLFVAAIVAHMFRTFFTGAFRKPRETNWAIGVAIAILAG
                     LEGLTGYSLPDDLLSGTGLRIISAITMSPPVIGTWAHWAIFGGEFPGNMIIPRFFIVH
                     VLLIPGILLALIAVHLGLVWYQKHTQFPGPGRTERNVVGVRILPIFATKASGFAMANI
                     GVICIMAGLFQINPIWNFGPYNPAQVSAASQPDWYVGWLDGSTRLWPAWEIYLGNYLI
                     PASFWPTMVIPGIMFGLAFGYPAIERKLTKDNASHNLLQRPRDVPVRTGLGMMAISFM
                     FVLLLSGGNDVIAYTFDISLNATTWAGRIGMLLLPPIAYYVTYRICLGLQRADRAILE
                     HGIETGIIKRLPHGEFIEVHQPLGGVDGHGHPVPLDYQGARVPKRMNQLGSAGSPVPG
                     SIFRPDPPDQTRALEQARHDGAATNGETTSTNGAGRKLAGRPHQPTD"
     gene            complement(3503..>4125)
                     /locus_tag="VF788_10555"
     CDS             complement(3503..>4125)
                     /locus_tag="VF788_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX8934611.1"
                     /translation="KRAAGLGAAVLGAGLGVFALGGLVRNPWKGGDQAALWVTPWRSP
                     NGEPVFLRYDSEKLALARPEDLAPGSIATVFPYKRSWSEVEAHTALRASDSPVMLIRL
                     RPEQAARVVQRKGQVDFHYGDFYAYSKICTHLGCPASLYEAQTARLLCPCHQSQFNML
                     EYAKPVFGPATRALPQLHIDVNDEGYFYAKGDFIEPVGPAFWERRS"
BASE COUNT          778 a         1227 c         1346 g          774 t
ORIGIN      
        1 cgctgcgccg cgtcctgctg cgcggtcagt agtcccagca acccacacac ccgcttgccc
       61 tcccgtcagc ggccgacccg gccggagcct gccggttcca tagagccatg gcggcccagt
      121 atgaggcagc ccccatgacg cctgggacgc taggccactc atgccccgga cgagctgcga
      181 ccgtcgcgct gggttaggct ccagtcagtg ggctggctag gcgctcgggt caatgaggag
      241 gaacagggcg tgatcggggt ggtccgttcc cgtgccatgc ggctactgaa ggtggccggg
      301 ttggccggaa tgatcgcctt tgtctccaca ggctgctcgg tatatcaggc ctttgcgttc
      361 ggctggccac agggggtcac tccgcaagct gagcggatgc gttcgctatg gatttgggcg
      421 acgatcgcgg ccttagccgt aggtttgatc gtcgctttgc tgatcatgtg gacagtgacc
      481 tttcaccgga aaaagtctaa tgagataccc aggcagacgc agtacaacct gccgctggaa
      541 atcatttata cggttattcc gttcgtgatc gtcgctgtgc tcttttactt cacggtcacc
      601 gcgcagaact tcgtcaacgc caaagttgac aaccccgatc tgcgggtaag ggtgatcggc
      661 ttccagtgga actgggagtt ccagtacttg caggagcggc cgggcagagg cggtgtctac
      721 caggttcgac aggcagatga cggcgagccg ttgtccacta tcggttcgtc tagcaccatc
      781 ccgctgctgg tagttcccac taatagggtc gtggaatacc gcatcgagtc cacggacgtt
      841 ctgcactcgt tctacatacc ggacttcctc ttcaagcgtg acgtcttccc gcacccggag
      901 aaaaacgaca ccgacaacgt gttccagacc acggtgcagc gtcaaggcgc gttcgtcggt
      961 cggtgcgccg agttgtgcgg tacctaccac tcaatgatga atttcgagat gcgggcattg
     1021 cctccggatc tgttcgatcg gtatctggcc ttacgggctc agaccaaccc gcagacccat
     1081 cgctcgtaca acgcgggcga ggcgctcgcc cagctgaatt gtggcgagct gtgtgccccc
     1141 gaggcggtca ccacctcgcc gttcgacacc gatcgcaccg cccgcgaagt gcgccaggcc
     1201 cagggtggcc attaaccttc atcacaggtg tccttagtaa ggtccgagag tgaggcagca
     1261 ccatgagggt cgaggcccgg atcttcgaga tcatcaccgc gttctttttc gcgtctgcgg
     1321 tgatctacgg tctctggtcg catggtgagc cggtcgggtc ggcagcgata accctgacag
     1381 gtgggctgac cctcatcgtc ggcacctact tccggtttgt ctcccggcgg gtccggatgc
     1441 ggccagaaga caatgtcgac gccgagatct cggacggcgc tggggagcta gggttcttct
     1501 ccccaggcag ttactggccg ttcgggatgg cactgggagc cagcgtgctc ggttacgccc
     1561 tcgccctcaa cctgtggtgg atggtcgcga ttggcgttgc gctggtgatc ggaacagtta
     1621 ccgggctggt cttcgaatac cacatcggtc ccaaacctga gtgatcctgg cgttatgggt
     1681 agccgcagct cccggtgggg tcagtaaggc gacttctcgt cgccgagttc cacaacagcg
     1741 cgcgggcgta agtcgaccag gacagctcgt agacggatga ggcgaacggg ttctggtacc
     1801 aagtttgcgc ctgggtgccg ctaactagcc tagtcggtgg gctggtgtgg gcgaccggcc
     1861 aatttacgac cggcgccgtt ggtgctggtc gtctcgccgt tagtcgcagc cccatcgtgg
     1921 cgggcttgct cgagggccct tgtctggtcc ggggggtctg gccggaagat agagccgggt
     1981 accggactac ccgcggagcc cagctgattc atccgcttgg gcacccgcgc gccctggtag
     2041 tcgagcggga caggatgacc atggccgtcg acgccgccta gcggctggtg cacctcgatg
     2101 aactcaccgt ggggcaaccg cttgatgatg cccgtctcaa tcccgtgttc gaggatcgcc
     2161 cggtcggctc gctgaagccc aagacagatc cggtaggtga cgtagtacgc gatcgggggc
     2221 agcaacagca tgccgatgcg tccagcccat gtcgtggcgt tcaatgagat gtcgaacgtg
     2281 taggcgatga cgtcattgcc accggaaagc aacagcacga acatgaatga gatcgccatc
     2341 atgcccaagc cggtacgcac cgggacgtcc cggggacgct gtagcaggtt gtgcgaggcg
     2401 ttgtccttgg tgagctttcg ctcgatcgcc gggtatccga acgccagacc gaacatgatg
     2461 ccggggatca ccatcgtcgg ccagaaagat gcggggatca ggtagttgcc gagatagatc
     2521 tcccaggccg gccacaaccg ggtcgaacca tcgagccaac ctacgtacca gtcgggctgt
     2581 gaagccgctg agacctgagc cggattgtac ggaccgaagt tccatatggg gttgatctgg
     2641 aacagaccgg ccatgatgca gatcacaccg atattcgcca ttgcaaaacc actggccttg
     2701 gtcgcaaata tcggcagaat acggacaccg accacatttc gctcggtgcg gccgggcccg
     2761 gggaactggg tgtgcttctg ataccacacg agtccgaggt ggacggctat gagcgccagc
     2821 agaatgcccg ggatgagcag cacgtgcacg atgaagaatc gtggaatgat catgttgccg
     2881 gggaattcgc cgccgaagat tgcccagtgt gcccaagtgc cgatcaccgg gggcgacatg
     2941 gtgatcgcgg agatgatccg gagcccggtt ccagagagca ggtcgtcggg cagcgagtag
     3001 ccggttaggc cctcgaggcc ggcgaggatc gcgatggcca cgccaattgc ccagttcgtc
     3061 tcccgaggct tgcggaacgc accggtaaag aaggtgcgga acatgtgggc gacgatggcg
     3121 gcgacgaaca gcagtgctgc ccagtggtgc acctgccgga tgaacagccc accacggacg
     3181 tcgaaggaaa gctccagggt cgatgcgtag gcccgggaca tctcgatccc gcggaggttc
     3241 gtgtagacgc cgttgtatgt gacgtcctcc atggaggggt cgaagaacag tgtcaggtac
     3301 gtcccggaca gcagcaacac gatgaaggtg ttcagcgcga tctcaccgag catgaacgac
     3361 cagtgcgtcg ggaagacctt gttgatctgc cgacgcatgc cggaggcgag gtgaaaccgc
     3421 tgatccagct cgtcggcagt cttgcccgcc cgggcagcaa gaccgccgga ggtggccggc
     3481 gtggtctggg tcgacatctc gctcatgacc tccgctccca gaacgctggt cctacgggct
     3541 cgatgaagtc gcccttggca tagaagtatc cctcatcgtt cacgtcgata tgcagctgag
     3601 gcaaggctcg ggtagcaggg ccgaagaccg gcttggcgta ctcaagcatg ttgaactgcg
     3661 actggtggca tggacacaac agccgagccg tctgggcctc gtacagcgaa gcggggcagc
     3721 cgagatgggt gcagatcttg gagtacgcgt agaagtcgcc atagtggaag tcgacttggc
     3781 ccttgcgctg gaccacccgc gctgcttgct caggtcgcaa ccggatgagc atcaccgggc
     3841 tgtcggaggc gcgcagagcg gtgtgagctt ccacctccga ccaggagcgt ttgtagggga
     3901 agacggtggc gatgctgccc ggggcgaggt cttcgggacg cgccagcgcg agtttctcgg
     3961 agtcatatcg aaggaacacc ggttcgccgt tgggcgaacg ccacggcgtg acccacagcg
     4021 cggcctggtc accgcctttc catgggttgc gtaccaggcc accgagggcg aagacgccca
     4081 atccggcacc gagcaccgcg gccccgagcc cggccgcccg cttga
//
LOCUS       DASVXZ010000510         3013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1012898, whole genome shotgun sequence.
ACCESSION   DASVXZ010000510 DASVXZ010000000
VERSION     DASVXZ010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012898"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /locus_tag="VF788_10560"
     CDS             <1..498
                     /locus_tag="VF788_10560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934612.1"
                     /translation="GAARAALIGHGLPDGGDLLVIDGPLRGRQHLPRALGYIKSHRSE
                     YLPPHLRRLVASLSAGQRTPVFLVGSSWDRYTWYLRLPCPPGAPWAGIVRLECSATLH
                     AADAIKMAWLSQATLYRYASAEYKDTRAPQNLYPIAGLESALRRRLGDAMLLYRGLRR
                     AGAHQ"
     gene            complement(519..1400)
                     /locus_tag="VF788_10565"
     CDS             complement(519..1400)
                     /locus_tag="VF788_10565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011872939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8934613.1"
                     /translation="MIGLGGNNFGGRIGLEQTRGVVDAAIDCGVTLIDTADIYGNRGG
                     SEKLLGQVLAGRREHVVLATKFGMDMGEGTVARGSRKYIRRAVEGSLHRLQTDYIDLY
                     QYHEPDGLTPLEETLATLNDLVTEGKVRYIGSSNFAGWQISDADWITTVQHRARFVSA
                     QNHYNLLERDAEREVIPSCVNRGIGVLPYFPLANGLLTGKYRRGQAAPQGTRLAGRES
                     ALTDDVFDKLEALERFAEKHGRSLLDVAIAGLAAMPAVASVIAGATKPEQVRANAAAG
                     EWELSPDELTELRSTLT"
     gene            complement(1584..1835)
                     /locus_tag="VF788_10570"
     CDS             complement(1584..1835)
                     /locus_tag="VF788_10570"
                     /inference="COORDINATES: protein motif:HMM:NF022742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3099 domain-containing protein"
                     /protein_id="HEX8934614.1"
                     /translation="MSTQPLIITDAAPSFDEQQAHRRRIYSILMIVHVVGFALSYPLY
                     LWQPWVGVLAIALTGVLPWVAVLLANDPHRRAARKPEGW"
     gene            complement(1877..2992)
                     /locus_tag="VF788_10575"
     CDS             complement(1877..2992)
                     /locus_tag="VF788_10575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX8934615.1"
                     /translation="MMSVAATSREGRPVTKAPGKTTEGPVQRDVKDLQRPDHVEEAGD
                     LEWDEQESEAVRRAREEAQFTVSADPVRVYLTQIGKVALLTAEEEVGLATRIEAGLYA
                     GERIRQAQDDVENLSPQLHRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMPF
                     LDVIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAEQARTIRIPVHGVEL
                     INKLGSLMRELLQDLGREPTLHELAREMDIAPEKVLEIQQYAREPISLDQTIGEEGDS
                     RLGDFIEDSQAIAAVDAASFGLLQDDLQFVLATLSEREAGIVRLRYGLTDGQPRTLDQ
                     VGHVYGVTRERIRQIETKTMAKLRHPSRSEVLRDYLD"
BASE COUNT          522 a         1017 c          923 g          551 t
ORIGIN      
        1 ggggccgccc gagccgcgct catcgggcac ggactgcccg acggcggcga cctcctggtg
       61 atcgacggtc cgttgcgcgg ccgccagcac ctgccgcggg cactcggcta catcaagagc
      121 catcgcagtg agtacctgcc accacacctt cgccgcttgg tggcctcgtt gtcggccggt
      181 cagcgcaccc cggtgttcct ggtcggcagc tcatgggacc gctacacctg gtacctgcgg
      241 ttgccctgcc caccgggtgc gccctgggcc ggcatcgtgc gtctggagtg cagcgcgacg
      301 ctccacgccg cggatgctat caagatggcg tggctcagcc aggcgacgct gtaccgctac
      361 gcttccgccg agtacaagga tacccgggcg ccccaaaacc tgtacccgat cgccgggctt
      421 gagtcggcgc tgcggcgacg gctcggcgat gccatgctgc tgtaccgcgg attgcgcagg
      481 gccggtgctc atcagtgatt gtggacgcac cgctgagctc acgttaatgt cgatcgaagc
      541 tcggtgagct cgtccggtga caattcccat tccccggcgg cggcattggc tcgtacctgt
      601 tcgggcttcg ttgccccggc aatgaccgaa gcaactgccg gcatggccgc caagccagcg
      661 atggccacat ccagcagcga acgtccatgc ttctccgcga accgctccaa cgcttcgagc
      721 ttgtcgaaca cgtcgtcggt cagcgccgac tcgcgcccgg ccagccgcgt cccttgaggt
      781 gcagcctgtc cgcgtcggta tttgccggta agcagcccat ttgccaaggg gaagtatggc
      841 aacacgccaa taccgcgatt cacacacgag ggtatgactt cgcgttccgc atcacgttcc
      901 agcaagttgt agtgattctg cgccgagacg aaccgagccc gatgctggac tgtggtgatc
      961 caatcagcat cggaaatctg ccacccggcg aagttggagg acccgatgta acgcaccttg
     1021 ccctccgtga caagatcatt gagcgtggcc aatgtttcct cgagcggagt gaggccatca
     1081 ggctcgtggt actggtaaag gtcaatgtaa tccgtctgca aacggtggag actgccctcc
     1141 accgcgcgcc gtatgtactt gcgggaccca cgcgcaactg tgccctcacc catatccatg
     1201 ccgaacttcg tcgccagcac gacgtgctcc cgccgacccg ccaacacctg acccagaagc
     1261 ttctctgatc cgcctcgatt cccgtagata tcggcagtgt caatgagagt cacaccgcag
     1321 tcgatggcgg catcgaccac gccacgcgtt tgctccagac cgatacgacc gccgaagttg
     1381 ttccctccga ggccgatcat cgacacagtg agtccggact cacccaactg gcgatagcgc
     1441 atgtcatgcc cccctgacag agagaccgct ggggaagttc ccagcccgag aacgcgctaa
     1501 accgcgccgt tttcccggca ccccctggac gactaccccg gcctcgcggg atggcgtatg
     1561 tagcggaccg cgccgggaga acctcaccaa ccttccggct tccgggcggc gcggcggtgt
     1621 gggtcgttcg ccagtaagac cgcgacccac ggcaggacac cggtgagtgc gatggcgagg
     1681 acgccgaccc agggctgcca tagatacagc gggtaggaca aggcgaagcc caccacgtgg
     1741 acgatcatga ggatcgagta gatgcgtcgg cggtgcgcct gctgctcgtc gaacgacgga
     1801 gcggcatcgg tgatgatgag cggctgagtg gacaacgtag gcctcccacg agtcgccgag
     1861 aactggcttt ctcgggctag tcgaggtagt cgcggagcac ttctgagcgg gagggatgcc
     1921 gcagtttggc catcgtcttg gtctcgatct gccggattcg ttcccgggtg accccgtaga
     1981 cgtggccgac ctggtccagg gtacgcggct ggccatcggt aaggccgtag cgcagccgga
     2041 cgatgccggc ttcccgctcc gatagcgtgg ccagcacgaa ttgcaggtca tcctggagca
     2101 ggccgaatga cgccgcgtca accgcggcga tggcctggga gtcctcgatg aagtcgccga
     2161 gtctggagtc accctcctca ccgatggtct gatccagaga gatcggctcc cgggcatact
     2221 gctggatctc cagcaccttc tccggagcga tgtccatctc cctggccagc tcgtgaaggg
     2281 tgggttcacg gccgaggtcc tgaagcaatt cgcgcatcag gctgcccagc ttgttaatca
     2341 actcgacccc gtgcaccggg atccggatgg tgcgagcctg ttcagccatc gctctcgtga
     2401 tcgcctgccg gatccaccag gtggcgtagg tggagaactt gaagcccttg gtgtagtcga
     2461 acttctccac cgcacggatc agccccagat tgccctcctg aatcacgtcc aggaagggca
     2521 tgccgcgacc ggtgtagcgc ttggccagcg acacgacgag tcgaaggttg gcctccagaa
     2581 gatggttctt ggcccgctcg ccgtcgcgga cgatccagcg cagatcccga tgcagctgcg
     2641 gcgagaggtt ctcgacgtca tcctgggcct ggcgtatccg ctcaccggca tataacccgg
     2701 cctcgatccg cgtagccagc cccacctcct cctccgcggt gagcagcgcc accttgccga
     2761 tctgggtgag gtagacccgc acggggtcgg cggacaccgt gaactgggcc tcctcgcgtg
     2821 cccggcgtac tgcctctgat tcctgctcat cccactcgag atctccggcc tcctcgacgt
     2881 ggtccggccg ctgaagatcc ttgacgtccc tctgaaccgg cccttccgtt gtctttcccg
     2941 gcgccttggt cactgggcgg ccttcgcggg atgtggcggc gacgctcatc atccccacct
     3001 cctcgacctg att
//
LOCUS       DASVXZ010000511         7916 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_861676, whole genome shotgun sequence.
ACCESSION   DASVXZ010000511 DASVXZ010000000
VERSION     DASVXZ010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7916
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_861676"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..570)
                     /locus_tag="VF788_10580"
     CDS             complement(64..570)
                     /locus_tag="VF788_10580"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEX8934616.1"
                     /translation="MSGPILILIGPPGSGKSTVGRLAAAKLGVSFRDFDDDLENECGL
                     PAGELVVKLGRERFSEVESGLIGAVLADHAGVLALGGGTPLNPEIQEQLKSFHIVFLD
                     VELDELLRREGLVPLHPWLLPHPRAHLRRLLAERRPVYEAVSRAVVPTTGRSAEDVAA
                     EVLLTLHQ"
     gene            complement(570..1760)
                     /gene="aroC"
                     /locus_tag="VF788_10585"
     CDS             complement(570..1760)
                     /gene="aroC"
                     /locus_tag="VF788_10585"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020501927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEX8934617.1"
                     /translation="MLRWITAGESHGPALVAVLEGMVAGVEMSSKDVQAELARRRLGY
                     GRGARMKFEADEVDLLGGIRHGRTLGGPVAIRIGNTEWPKWETVMAADPVDPDVLARQ
                     SRNEPLTRPRPGHADLAGMTKFGFDDARPVLERASARETAARVALGTVAKAFLRQALG
                     AEVLSHVVSLGQADAPTDVLPGPGDLERIDASPVRAFSEEATAAMVAEVDAAKRDGDT
                     LGGVVEVVTYGLPVGLGSFVHADRRLDARLAGALMGIQAMKGVEVGDGFATARRRGSA
                     AHDEMSPGPDGVVRSTNRAGGLEGGMTNGEVLRVRVAMKPISTVPRALATVDVATGEA
                     AVAINQRSDVCAVPAAGVVAEAMVALVLADAALEKFGGDALSETVRNARAYTDASRQR
                     DWYA"
     gene            complement(1800..3341)
                     /locus_tag="VF788_10590"
     CDS             complement(1800..3341)
                     /locus_tag="VF788_10590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020637349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX8934618.1"
                     /translation="MSTQVLATSPTGGPDAEHLRSIGYRQELHRRLGWFSSFAAGFSF
                     VSILTTVFQLFALGYSFGGPAFFWTWPLVFAGQLCVALVFAELAASWPLAGCIYQWSR
                     RLASETVGWFAGWAMMVGYIVSVAAIGIALQAVLPAVWSGFQIVGTDPSITSASGAAN
                     GIMLGSVLIALATVISAVGVRFMALINGIGVTCELVGVVLLLALLFGHAERGPGVVTE
                     TLNVNGNSPYLYAFLASTLMAAYVMYGFDSAAELSEETTQPRQVVPSAILRALLVSFV
                     GGGFMIVAALMAAPSLTDGQLSTGGIAYVITSRLDSTLGRALLAVVAISIVSACLAIQ
                     NSASRVMFSMARDGRLPGARLLARVSPHTGTPIITGIAVGVLAIAVLLINLGNPAAFA
                     AVTSTSVVIVYLAYLLVTVPALGARLGRRLPSKQPGGFSLGRWGLPVNLFAVVYGAAM
                     MINIAWPRQAVYDPAGTSWALQYLALLFVAALVVVGAAVYRLLRGRSAPVTVAVEASA
                     AAVEA"
     gene            complement(3338..4456)
                     /locus_tag="VF788_10595"
     CDS             complement(3338..4456)
                     /locus_tag="VF788_10595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase family protein"
                     /protein_id="HEX8934619.1"
                     /translation="MDDLHDNYGPEARYAVEAEAALPTTKWEQEIARGLELGLPGADS
                     IVDRRIPTFSRGELPHFAGINTFLKAPYIEDVHRCGDYDVAVLGAPFDGGTTYRSGTR
                     FGPQGIRKISALYGPYSFELGVDLRESITIADLGDVFTIPGNIEKTFDQISKAVGHVY
                     ASGAFPVVLGGDHSIGYPTTRAIAEHLNGGNLGIIHFDRHVDTQETDLDERMHTTPWF
                     HATDIPNVPPQNLVQIGIGGWQAPRPGVQVGRERGTTIMTVTDCVEMGIEAAAQRALD
                     VAWNGADAVWLSFDVDCLDAAFVPGTGWPEPGGFLPREVLKFIQLIAARPLAGIEVVE
                     CSPPYDNAEITALIATRVICDTLGCLARAGHLPRKAAP"
     regulatory      complement(4510..4616)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00442"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="guanidine-I (ykkC/yxkD leader) riboswitch;
                     Guanidine-I riboswitches control genes whose products are
                     involved in modification or pumping out guanidine as a
                     toxic compound from bacteria; This is class of guanidine
                     riboswitches is based on the ykkC/yxkD leader; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="guanidine"
                     /db_xref="RFAM:RF00442"
     gene            complement(4768..5172)
                     /locus_tag="VF788_10600"
     CDS             complement(4768..5172)
                     /locus_tag="VF788_10600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934620.1"
                     /translation="MAARPRAAAFAETGDGLDPAAGTARWTAAMRALESARPVPIGSS
                     TTPWRRRLRERQGAHLDLPAITTVFKLDRPDLLRLKNTLLARTPAPRCTRRSPPLHRG
                     HPAGPLALPRSRSGTPGVPYAYLILGQAMGTT"
     gene            5320..6150
                     /locus_tag="VF788_10605"
     CDS             5320..6150
                     /locus_tag="VF788_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEX8934621.1"
                     /translation="MRIRIIDAFTDRPFAGNPAAVCLLDGDSWPDECWMRQVAAEMNL
                     SETAFAHPLPETADADWALRWFTPTVEVDLCGHATLATVHALRSDGTTTGAVRFSSRS
                     GVLITRTHGDGTIMLDFPLAPTAQVSIPEGLSDALNAKPDAVYSTGALSDLLAVFSDE
                     AAIRALAPDFAALSHLSRREGVRAIIATAPAEPGNDYDFVSRCFAPAVGIPEDPVTGS
                     AHTALAPYWSGRLGRDNLAGMQVSARTGLVHTAVHGDRVHLTGRAVTVLDGTLLHTAG
                     "
     gene            complement(6214..6867)
                     /locus_tag="VF788_10610"
     CDS             complement(6214..6867)
                     /locus_tag="VF788_10610"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HEX8934622.1"
                     /translation="MQAAGGPLGGDELVLDLKLGADTHTQMRSVAAMVVQAGGPPAVA
                     RWTVAATLGAGAALDWQPQPTVVCDGAELHSQMTVTLQRGAHAVLREEVMLGRAGQRG
                     GRFVGELTVDLEGAPLLAHTLLLDGADPVLAGPAGTGGARVVGMLAMVGEGIDRPPER
                     AGEEPGLRWAWSALDGPGWLLLALGDRVIDVSRCLDQAVQEWPGSARTWSRTARGRV"
     gene            complement(7017..7667)
                     /gene="ureG"
                     /locus_tag="VF788_10615"
     CDS             complement(7017..7667)
                     /gene="ureG"
                     /locus_tag="VF788_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016337502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HEX8934623.1"
                     /translation="MHREDQLDQPIAAGGHRGRALRIGIGGPVGSGKTALVAALCRTL
                     RDELSLVVVTNDIYTTEDADFLRTNGVLPDERIRAVRTGCCPHTAIRDDITANLDAIE
                     ELTARHDPDLVLVESGGDNLTATFSYGLIDAQIFVLDVAGGDKVPRKGGPGVTRSDLL
                     VINKIDLAPLVGADLDVMRRDAAKVRGERPTLLVSLRDQQAAQPIVEWVRTRLVNA"
     gene            complement(7657..>7916)
                     /locus_tag="VF788_10620"
     CDS             complement(7657..>7916)
                     /locus_tag="VF788_10620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="urease accessory protein UreF"
                     /protein_id="HEX8934624.1"
                     /translation="LLAVHHLLAGSCSASVRLLGLDPIAVAAVQVRAKGLAEEVMRAA
                     TRAAHEAVTQRNTRLLPSTGTPLPEVLAELHARTEVTLFAS"
BASE COUNT         1380 a         2776 c         2540 g         1220 t
ORIGIN      
        1 tccactcctc ccgcgtcgac acccggggag catcccacga gccaacccat ctaagccgca
       61 agatcactgg tgcagggtca gcagtacctc tgccgcgacg tcctcagcag aacgaccagt
      121 cgtcggcacc acggctcgtg acactgcttc atagaccggt cgccgttctg cgagtaatcg
      181 tcggagatgt gcccgggggt gcggaagcag ccatgggtgt aatggaacca atccctcgcg
      241 gcgaagcaac tcatctagct ccacgtcgag gaacacaata tggaaagatt tcagttgctc
      301 ttggatttcg gggttcagtg gagtgcctcc gccaagagcg agcacacccg catgatcagc
      361 gagaacagca ccgataagac cactttcgac ctcgctgaat ctctccctac ccagcttgac
      421 caccagttca ccagccggca gtccgcactc attctctaag tcgtcatcga agtcgcgaaa
      481 ggagacaccc agcttggccg cagcaagtcg gccgacagtg ctctttccgg agcccggcgg
      541 gccgatcagg atcaggatag gtccgctcat catgcatacc agtcgcgctg ccgggaggcg
      601 tcggtgtacg cgcgagcatt gcgtaccgtt tcggacagcg cgtcaccccc gaacttctcc
      661 agcgcggcat cggcgagcac gagcgcgacc attgcctcgg cgaccacgcc ggccgcgggg
      721 accgcgcaca cgtcggagcg ctggttgatc gcaacagccg cctcgccagt ggcgacgtcc
      781 actgtggcca gcgcacgggg caccgtggag atcggcttca tcgccacccg gacccgcagc
      841 acctctccgt tggtcatgcc accctcgagg ccaccagccc ggttcgtgga gcgcaccacg
      901 ccatcgggtc cgggggacat ctcgtcgtgg gcggcgctgc cccggcggcg cgcggtggcg
      961 aacccatcgc ctacctcgac gcccttcatc gcctggatgc ccatcagcgc gccggccagc
     1021 ctggcgtcca gccgccggtc ggcgtgcacg aaagagccca gcccgaccgg gagcccgtag
     1081 gtcacgacct cgaccacgcc gcccagcgtg tcaccgtcgc gtttcgccgc gtccacctcg
     1141 gcgaccatcg ccgcggtcgc ctcttcggag aatgcgcgaa ccgggctggc gtcgatccgc
     1201 tccaggtcac cgggtccggg caggacatcc gttggggcat ccgcctgccc cagggacacc
     1261 acgtgagaga gcacctcggc gcccagtgcc tggcgcagga acgccttcgc cacggtaccc
     1321 agagcgactc gagcagcggt ttcccgcgcg ctggcccgct ccagcaccgg gcgagcgtcg
     1381 tcgaagccga acttggtcat cccggccagg tccgcatggc cgggccgagg ccgggtcagc
     1441 ggctcgttgc gggattgcct ggcaagcacg tccgggtcca ccgggtcggc cgccatcacg
     1501 gtttcccact tgggccattc ggtgttgccg atccggatcg ccaccggacc gcccagcgtc
     1561 cgaccgtgcc tgatgccccc taggaggtcc acctcgtcgg cttcgaattt catccgggcc
     1621 ccacgcccgt accccaggcg gcgacgggcc agctcagctt gcacgtcctt ggatgacatc
     1681 tcgaccccgg cgaccatgcc ctccagcacg gcgaccagcg caggcccatg cgactcccca
     1741 gcagtgatcc agcgcagcat gccgccatcg tgccaggcgt ggtcgcctcg gtgctgaact
     1801 catgcctcga cggcggcagc ggaggcctca accgcgacgg tcaccggcgc ggacctaccg
     1861 cgcagcagcc ggtacaccgc cgcgcccacc acgacgagcg cggccacgaa cagcagcgcg
     1921 agatactgca gcgcccaact ggtgcctgcc gggtcgtaca ccgcctgccg aggccaagcg
     1981 atgttgatca tcatcgccgc gccgtacacg acggcgaaca ggttcaccgg cagcccccac
     2041 cgccccaacg agaagccgcc cggctgcttg gatggcagac gccggcccag tcgcgcaccc
     2101 aaagccggca cggtgaccag caggtacgcg aggtacacga tcactactga ggtgctggtg
     2161 accgccgcga atgctgccgg attaccgagg ttgatcagta gcaccgcgat ggccagcaca
     2221 cccaccgcga tgccggtgat gatcggcgtc ccggtgtgcg ggctgacccg agccagcagc
     2281 cgagctccgg gcaggcggcc atccctcgcc atgctgaaca tcactcgcga cgccgagttc
     2341 tggatcgcca agcatgccga aacgatcgag atcgccacca cggcgagcag cgcccggccg
     2401 agtgtggagt ccagccggct ggtgatgacg taggcgatgc cgccggtgga cagctggccg
     2461 tcggtcagcg aaggcgccgc catcagcgcg gctacgatca tgaacccgcc gccgacgaag
     2521 gagaccagca gcgcccgcaa aatcgcggag ggcactacct gccgcggttg ggttgtctcc
     2581 tcggagagct ccgcagcgct gtcgaacccg tacatgacgt aggccgccat cagggtggag
     2641 gcgaggaagg catacaggta aggactgttg ccgttcacgt tgagcgtctc ggtgaccacc
     2701 ccgggaccac gctcggcatg accgaacagc agcgcgagca acagcaccac accgaccagc
     2761 tcgcaggtca ccccgatccc gttgatcaac gccatgaagc gcaccccgac ggcactgatc
     2821 acggtggcca gcgcgatgag caccgagccc agcatgatcc cgttggccgc tccggatgcc
     2881 gaggtgatcg acgggtcggt accgacgatc tggaaccccg accacaccgc gggcagcacc
     2941 gcctgcagcg cgataccgat ggccgccaca ctcacgatgt agccgaccat catcgcccac
     3001 ccggcgaacc aaccgacggt ctcactggcc agccggcggg accactgata gatgcacccg
     3061 gccagcggcc aactcgccgc caactcagcg aataccagtg ccacgcacaa ttgaccagcg
     3121 aacaccaagg gccaggtcca gaaaaacgcc gggccgccga aggagtagcc cagcgcgaag
     3181 agttggaaca ccgtggtgag gatcgagacg aaggaaaacc cggcggcaaa agaagagaac
     3241 cagcccaagc gccggtgcaa ctcctgccgg tagccgatgc tgcgcaggtg ctcagcgtcg
     3301 gggccgccgg tcgggctcgt agccaggacc tgggtactca tggagccgcc tttcgcggga
     3361 ggtgaccggc gcgcgcaagg cagccgaggg tgtcgcagat gacccgggtg gcgatgagag
     3421 cggtgatctc ggcgttgtcg tagggcgggg aacactccac gacctcgatg cccgctagcg
     3481 ggcgcgccgc gatgagctgg atgaacttca gcacctcgcg gggtaggaag ccgccaggtt
     3541 cgggccatcc cgtaccgggt acgaacgcag cgtcgaggca gtcgacgtcg aatgacagcc
     3601 aaaccgcgtc ggcaccgttc caggcgacgt ccagggcgcg ctgggcggcg gcctcgatgc
     3661 ccatctcgac gcagtcggta actgtcatga tcgtggtgcc ccgctcccgg ccgacctgca
     3721 ccccgggccg gggtgcctgc caaccgccga tgccgatctg caccagattc tgcggcggca
     3781 cgttggggat atcggtggcg tgaaaccagg gggtggtgtg catccgctcg tcgaggtcgg
     3841 tttcctgggt gtcgacgtgg cggtcgaagt ggatgatgcc gaggtttccg ccattgaggt
     3901 gttcggcaat ggcgcgggtg gtcgggtagc cgatggaatg atcgccaccc agcaccaccg
     3961 ggaaggcgcc ggatgcgtag acgtgcccga ctgccttgga gatctggtcg aaggtcttct
     4021 cgatgttgcc ggggatggtg aatacgtcgc cgaggtcggc gatggtgatg gactcccgca
     4081 ggtcaacgcc cagctcgaag ctgtaaggtc cgtacagcgc ggatatcttg cggatacctt
     4141 ggggaccgaa ccgggtcccg gagcggtagg tggtgccccc gtcgaagggg gcgcccagca
     4201 ccgccacgtc gtagtcgcca caacggtgga catcttcgat atatggggcc ttgaggaagg
     4261 tattgatacc ggcgaaatgc ggcagctcac ctcgggagaa ggtgggtatc cgccggtcga
     4321 cgatcgagtc agcaccgggc agacccaatt cgagcccccg agcgatctcc tgttcccatt
     4381 tcgtcgtcgg tagtgcagcc tccgcctcga cggcgtagcg tgcctccggg ccgtagttgt
     4441 cgtgcaggtc gtccacctcg gggcctccgc atccacggcg cccggccggc aggcagccgg
     4501 gcgtggctgg cctcccgggc ttttgtcccg ccgtggagcg ggcagcgcac tgcccgcctg
     4561 cacctctcgg tccaggctcg ctaacggaca gcgacggaac cctaggtgcg cctcactcac
     4621 tagagtgagt cgaaaccatc acacgacatc actgtgaccg tcctgtaacc acagcgttgc
     4681 ggtcacatct cctatttgcg gtcgagcact gcaagtcacc tgaccactgc gaggacgatc
     4741 tcgttatcga tcagtcggac gcgacggtca tgtcgtcccc atcgcctgcc cgagaatgag
     4801 gtacgcgtac ggaactccag gggtaccgga gcgagatcgg ggtagggcca gcggcccagc
     4861 cgggtgcccg cggtggagag gaggtgagcg acgggtgcag cgcggtgccg gcgttctagc
     4921 gagcagggtg ttcttgagtc gcagcaggtc gggccggtcg agcttgaata cagtggtgat
     4981 ggcgggcaaa tcgagatgcg cgccctgacg ctcccgcaag cgtcgtcgcc aaggggtcgt
     5041 cgaagagccg atcgggacgg gacgggccga ctccagagcg cgcatggcgg cggtccatcg
     5101 cgcggttccg gcagccgggt cgagcccgtc accagtctcc gcgaatgcgg ccgctcgggg
     5161 tcgagctgcc atgtcgatct ctcctcaggc gtcgtgatct cggatccagt cccaatggcc
     5221 agtaccgatc tgctacccgt agatgcgcat ctgagcttct ttgcgtaatc cgtcggttgc
     5281 tggcagcgcg tctcaggctc ggcctcttaa ggtctaccca tgcggatccg gattatcgac
     5341 gccttcaccg accggccgtt cgccggcaac cccgcagccg tctgcctgct ggatggcgac
     5401 agctggccgg atgagtgctg gatgcggcag gtcgccgccg agatgaatct gtctgagact
     5461 gcgttcgctc acccactgcc cgaaaccgcc gacgccgact gggcgctgcg ctggttcact
     5521 cccacggtcg aggtcgatct gtgcgggcac gccaccctgg cgaccgtcca cgctctgcgc
     5581 agcgacggca caaccaccgg agctgttcga ttcagtagtc gcagcggcgt cctgatcacg
     5641 cgcacccacg gcgacgggac catcatgttg gatttcccgc tcgcgcccac tgcccaggta
     5701 tccatccccg agggcctgtc tgacgccctc aatgccaaac ccgacgccgt ctacagcacc
     5761 ggagccctga gcgatctgct cgcggtgttc tcggatgagg cagccatccg cgccctggcc
     5821 ccggacttcg cggcgctaag tcacctgagc cgccgcgagg gtgtccgcgc gatcatcgcc
     5881 actgcaccgg ccgagccagg caacgactat gacttcgtct cccgctgctt cgcacccgca
     5941 gtggggattc ccgaagaccc ggttaccggc agcgcgcaca ccgccctggc cccttactgg
     6001 tcgggccgcc ttggtcggga caacctcgcc gggatgcagg tgtccgcccg taccgggctg
     6061 gtccacaccg ccgtccacgg cgaccgcgtg cacctcaccg ggcgcgccgt caccgtcctc
     6121 gacggcacgc tgcttcacac cgccgggtaa gcgcctccgc ccagtgcccc aggccacgct
     6181 gggcccaaga tctgtttccg gggctgcgac tcatcagaca cgcccccgcg ccgttctgga
     6241 ccaggtgcga gctgagcctg gccactcctg cacagcttgg tcgaggcacc ggctgacgtc
     6301 aatgactcgg tcgccgaggg ccagcagcaa ccatccgggt ccgtccaacg ctgaccacgc
     6361 ccagcgcagg cctggctcct cccccgcccg ctccggtggc cggtcgattc cctctccgac
     6421 cattgccagc attcccacga cacgtgcgcc acccgtgcca gcggggccgg cgaggactgg
     6481 atcggcacca tccagcagca gggtatgcgc cagcagcggt gcaccctcca ggtcgacggt
     6541 gagctcgccg acgaagcgac cgccacgctg gcctgctcgc ccgagcatca cttcctcgcg
     6601 caacaccgcg tgagctcccc gctgaagcgt gacggtcatc tggctgtgca gctctgcacc
     6661 gtcgcagacg acggtgggct ggggctgcca gtccagcgct gcacccgctc ccaatgtcgc
     6721 ggcgacggtc caccgcgcca ctgccggagg gccgcccgcc tgcacgacca tcgcggccac
     6781 cgagcgcatc tgcgtgtggg tatcagcgcc gagtttcagg tccaggacca gctcatcgcc
     6841 gcccaacggg ccgcctgccg cctgcactac gtgaacccgg tttgggccag tttggcgcaa
     6901 cacgatcggt ggggcacacc gccatcgcag acagtcagcc acagcaccgg attcgacggt
     6961 gagctcggcg cggacccgca cacggctcgt gagtgcgtaa cagtccgctg acactgctac
     7021 gcattcacga gccgggtgcg cacccactcg acgataggtt gcgccgcttg ctggtcccgt
     7081 agcgagacca gcaaggtggg gcgctctccc cgaaccttcg cagcgtcccg gcgcatcacg
     7141 tccagatcgg cacccaccag cggagcaaga tcgattttgt tgatcaccag caagtcagag
     7201 cgggtcactc caggaccgcc cttgcggggt accttgtctc cacccgccac atcgagcacg
     7261 aagatctgcg cgtcgatcag gccgtagctg aaggtggcgg tgaggttgtc acctccgctc
     7321 tccaccagta ccaggtcagg atcatggcgg gcggtgagtt cctcgatggc atccagattc
     7381 gcggtgatgt cgtcacggat cgcggtgtgc ggacagcaac cggtgcgcac cgcccggatc
     7441 cgctcgtcgg gcagcacccc attggtacgc aggaagtcgg cgtcttcggt ggtgtagatg
     7501 tcgttggtca ccaccactag ggacagctcg tcgcgcagcg tccggcacag cgcggcaacc
     7561 aaggcggtct tgccgctgcc gaccggacct ccgatgccga tccgcagtgc ccggcctcgg
     7621 tgtccacctg cggcgatcgg ctggtcgagc tgatcctcac gatgcaaaga gagtcacctc
     7681 cgtgcgggca tgcaactcgg cgagcacctc cggcagcggg gtaccggtgc tgggtagcag
     7741 gcgggtattc cgctgggtga cggcttcgtg tgcggctcgg gtagccgccc gcattacctc
     7801 ctcggccagc cccttcgcac gcacttgaac ggcagcgacc gcgatcggat ccagtccgag
     7861 cagccgcacc gaggcggaac acgacccggc gagcaggtga tgcacggcga gcaacg
//
LOCUS       DASVXZ010000512         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_565331, whole genome shotgun sequence.
ACCESSION   DASVXZ010000512 DASVXZ010000000
VERSION     DASVXZ010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565331"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VF788_10625"
     CDS             <1..199
                     /locus_tag="VF788_10625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3048 C-terminal domain-containing protein"
                     /protein_id="HEX8934625.1"
                     /translation="RDASGASSPFAATVGVGDAVVLRDGLAFNGSWSRPAPDAITTFA
                     LPDGSPLTFAPGPVWVVLVPA"
     gene            340..618
                     /locus_tag="VF788_10630"
     CDS             340..618
                     /locus_tag="VF788_10630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEX8934626.1"
                     /translation="MASYTKDRDVYLKRLRRIEGQIRGLQRMVEQDQYCIDVLTQVSA
                     ATKALQSFALALLEEHMTTCVVDAAADGGDAGVKVKEAADAIARLVRS"
     gene            659..877
                     /locus_tag="VF788_10635"
     CDS             659..877
                     /locus_tag="VF788_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-associated domain-containing
                     protein"
                     /protein_id="HEX8934627.1"
                     /translation="MGDTATVSEYAVTGMVCQHCVSAVTEEVGAVEGVTDVQVDLAAG
                     RVRITSDGPLDSAAVRAAIGEAGYEIAD"
     gene            941..1792
                     /locus_tag="VF788_10640"
     CDS             941..1792
                     /locus_tag="VF788_10640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934628.1"
                     /translation="MRRPIPVLALLAGLVTLFGFGINFGESVVGRTAPARQDHGGRGI
                     GEEDHGQGPGGLAVASQGYVLRPRITRFIAGEYENFRFTILSSNGEPVTDFARRGDRQ
                     MTLVVVRRDMRSYQHLYPVMDHDGTWTVPLDLEEPGSYRAFAEFLPGTAKAPVTLGVD
                     LDAPGFFEPGPISKESTVADIDGYTVVWTGNLIAGTLSRVWIHVMRDNLPVTDLDPIL
                     GGGARLVMLREGDLAYLNVRPVGGPRQDTATDFDVEVPTAGYYRMFLEFQHHGQLRTV
                     EFTALAR"
BASE COUNT          333 a          586 c          634 g          346 t
ORIGIN      
        1 ccgcgacgcc tccggggcat cttcgccgtt cgcggctacc gtgggcgtcg gggacgcggt
       61 cgtgctccgg gacggcctcg cattcaacgg aagctggtcg cgcccggccc ccgatgcgat
      121 caccaccttc gccctcccgg atggatcacc gctgaccttt gcacccggtc cggtctgggt
      181 ggtactcgtc ccggcataac tccgggaaca cccctgggat gaggtgcggg ctacggtgag
      241 gttcgctgcg cgagaacggc caaggctgcc ctgagatacc agtaaggggt atggttggta
      301 cccgttaggg gtatgtgagg ggtgacgaga gggcagcgaa tggcaagcta caccaaggac
      361 cgggatgtgt acctcaaacg gctgcgccgg attgagggcc agatccgcgg tctgcagcgc
      421 atggtggagc aggaccagta ctgcatcgat gtgctgaccc aagtgtcggc cgccaccaaa
      481 gccctgcaat ccttcgcgct ggctctgctc gaggaacata tgaccacctg cgtagtcgac
      541 gcggcggccg atggcggcga tgccggagtg aaggtcaagg aagcagcaga cgcgatcgcg
      601 cgcctcgttc gctcgtaacg caatacgagg gatgcgcaca gacccgagga ggtcatcaat
      661 gggagacacc gccactgtca gcgagtacgc cgtcacgggg atggtctgcc agcactgtgt
      721 ttcagcggtg acggaggagg tcggggcggt cgagggtgtc accgacgtgc aggtcgatct
      781 agccgccgga cgggttcgga tcaccagcga tggacctctg gacagcgccg ccgtccgcgc
      841 tgcgatcggc gaggcgggct atgagatcgc agactgaggt ctcatccccc gtgatcccag
      901 gctagccatg gtgcgcaccg gcagattgca ggtcgaacgg atgcgacgcc cgatccctgt
      961 gctcgcgttg ctcgccggtt tggtcacgtt attcggtttc gggatcaatt ttggcgaatc
     1021 ggttgtcggt cgtaccgcgc ccgctcggca ggaccacggc gggcggggca tcggcgaaga
     1081 ggatcacggc cagggccctg gtggacttgc cgtcgccagc cagggctacg tgctgcgtcc
     1141 acggatcaca cgattcattg ccggggaata cgagaatttt cgattcacca ttctctcgag
     1201 caatggcgag ccagtgacgg acttcgcccg gcgtggtgac cgccagatga cgcttgtcgt
     1261 cgtgcgccgc gatatgcgta gctaccagca tctatatccg gtcatggatc acgacggcac
     1321 ctggaccgtg ccgctggacc tcgaggaacc tggtagctac cgtgcgttcg ctgagttcct
     1381 acccgggacc gccaaggcac cggtgaccct cggagtagac ctggatgcgc caggtttctt
     1441 cgagcccggt ccgatatcca aggagtcgac cgtcgctgac atcgacggtt acacggtggt
     1501 ctggaccggg aacctgatcg cggggacgct atcgcgcgta tggattcatg tgatgcgcga
     1561 caaccttccc gtcacggacc tcgatccgat tcttggaggc ggtgcgcgcc tggtcatgct
     1621 ccgcgagggt gacctggctt acctgaatgt gcgtcctgtc ggggggcccc gccaggacac
     1681 cgcgaccgac ttcgacgtcg aggtgcccac tgctggttac taccggatgt ttctagaatt
     1741 ccagcatcac ggccagctgc gaaccgtcga gttcaccgcg ctggcaaggt gagacatgtc
     1801 taccgcccat gactacggcc ccggcacacc gtccggatcc ggcgagctga gccaccaagt
     1861 ggagttggcc atcggcggca tgacctgcgc gtcctgcgc
//
LOCUS       DASVXZ010000513         8105 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_144717, whole genome shotgun sequence.
ACCESSION   DASVXZ010000513 DASVXZ010000000
VERSION     DASVXZ010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8105
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144717"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..174
                     /locus_tag="VF788_10645"
     CDS             <1..174
                     /locus_tag="VF788_10645"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEX8934629.1"
                     /translation="VLTATGGDLVESLIKRDLGVKDMGTVLPGHGGLMDRLDSLLPSA
                     VVAWLLLSLLVPS"
     gene            219..944
                     /locus_tag="VF788_10650"
     CDS             219..944
                     /locus_tag="VF788_10650"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934630.1"
                     /translation="MTNRGVLASPNIWNWPEVYERENQAVDADGSLWAALADRVDWGG
                     ADVVDVGCGDGFHLPRFAERARSVVGVEPHPSLVSRARHRVRDQPHVQVRAGCAGRLP
                     LPDSSADLVHARVAYFFGPGCEPGLAEASRVLRPGGALVVIDLDGTYAPYGEWLCTAA
                     PRYRPVAAEAFFAAQGFDCQRVDTMWRFDDRRNLEDALRIEFTPAVAARAIAQTPGLT
                     IPVRYRMHTRRAVVYSSTWRVWR"
     gene            999..2135
                     /gene="rlmN"
                     /locus_tag="VF788_10655"
     CDS             999..2135
                     /gene="rlmN"
                     /locus_tag="VF788_10655"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEX8934631.1"
                     /translation="MTVLPLVFEAPRRGKPPRHLADLDRDQRRAAVLELGEPAFRADQ
                     LARHYFARLSTDPVTMTDLPATVRNRLVAALLPELATPVQHLGCDDGTTRKTLWRAAD
                     GALTESVLMRYPDRATVCISSQAGCGMACPFCATGQGGLTRNLSTAEIVDQVRAAAAA
                     MREGELSGGSGRLSNVVFMGMGEPLANYPQVVTALRRITDPAPDGLGLSQRSVTVSTV
                     GLVPAIRRLAEEKLHVTLAVSLHTPDDDLRDTLVPVNRRWKVAEVLDAARQYADSTGR
                     RVSIEYALIRDVNDQPWRADLLGGLLAERLGSMAHVNLIPLNPTPGSEWDASPLPVQE
                     EFLARVRAAGVACTVRDTRGREIAAACGQLAASQPEPTTEQVRS"
     gene            complement(2176..2916)
                     /locus_tag="VF788_10660"
     CDS             complement(2176..2916)
                     /locus_tag="VF788_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015801614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HEX8934632.1"
                     /translation="MNDERLAQTFVELADTLVDEFDLVEFLHILVDRCVELLDVSAAG
                     LMLADSRGRLQVMASSSENIRLLELFQLQNDDGPCLDCYRAGEPVDHPDLATAEDRWP
                     RFAPAAAGAGFRTVHALPMRLRAQIIGAFNLFHADPCQLDRSVTQIGQAMVDVATIGL
                     IQERSLRRNETLIDQLQTALNSRVLLEQAKGVLAERHGINPGEAFTLLRNYARRNHHR
                     LTQLAAAVVDGSTTAAELLSTSAAAPPD"
     gene            complement(3017..3742)
                     /locus_tag="VF788_10665"
     CDS             complement(3017..3742)
                     /locus_tag="VF788_10665"
                     /inference="COORDINATES: protein motif:HMM:NF015799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HEX8934633.1"
                     /translation="MTEASQVDRIWDAITAHAGALGVPVSVHTLCQTAADGLPVTGVA
                     VAMSGSFLVSELICATGPLSRQLEELQLTIGEGPTLEVLAGTGAILIEDLDAPAYQAR
                     WPLFAPQAIDIGARAMFVLPLRIGAIRGGVLALYVDRPGRLGAKDLAAAWVYSELALE
                     LLLDEQDGIVTQEGQSTSYRHSETRPEVHQATGMISVQLGISVGDAFTRLRARAFADD
                     RPLSEVAIDVVARRIRFDHEDTR"
     gene            complement(3995..4291)
                     /locus_tag="VF788_10670"
     CDS             complement(3995..4291)
                     /locus_tag="VF788_10670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8934634.1"
                     /translation="MEGSAELTITTVRGGAEYVRVILQGPIDNHGAQRLRNKLGALLD
                     TGARYLTVDLTDVNCCDEDLLDVLSWAAGLAPSQQGWLALTGVNHHIRFRFAAQ"
     gene            complement(4581..5234)
                     /locus_tag="VF788_10675"
     CDS             complement(4581..5234)
                     /locus_tag="VF788_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HEX8934635.1"
                     /translation="MELLPRPATEIAPGAVHLSRWLSLDEQRRLVLACREWAQPPAGM
                     RTIRLPNGSAMSVRTLCLGWHWYPYRYLRTVDDGDRSRVKPFPDWLADLGRRAVAEAY
                     ADPQAGHRYRPDIALVNYYDATARMGMHQDRDERSPAPVVSLSFGDTCVFRFGNTENR
                     GRPWRDVVLESGDLFVFGGPARFAFHGVPKTLPAPGYGDIGLYNGRLNITLRESGLE"
     gene            5357..6424
                     /locus_tag="VF788_10680"
     CDS             5357..6424
                     /locus_tag="VF788_10680"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010239891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEX8934636.1"
                     /translation="MQLPVMPPVAPMLAKPATEIPAGQHYEPKWDGFRSIIFRDGDEV
                     EIGSRKERPMTRYFPEVVAAVLANFPPRAVIDGEIVIANTERNTLDFEALQQRIHPAA
                     SRVKLLSEQTPASFVAFDLLALGDEDLTEQPLAQRWAALQDALVGAAAPVHLTPATRD
                     LELARRWFDQFEGAGLDGLIAKQLDLPYQPDKRTMTKIKHERTADCVLAGYRVHKSGP
                     DALGSLLLGLHDDRGVLVSVGVIGAFPMDRRRELLVELQPLVTTFDDHPWAWARQEEG
                     ERTPRKSETSRWNAGKDLSFIPLRPERVVEVRYDYLEGVRFRHTTQFVRWRPDRDPRS
                     CTYEQLERPVGFNIADVLTSG"
     gene            complement(6411..7340)
                     /gene="ligD"
                     /locus_tag="VF788_10685"
     CDS             complement(6411..7340)
                     /gene="ligD"
                     /locus_tag="VF788_10685"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020674125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEX8934637.1"
                     /translation="MTGAAALELEVGHRTVRITNPDRVYFPARGETKIDLVRYYLSVG
                     EGIVRALRERPCMLHRFPSGVTGPKVHQKRLPAGAPPWVHTVRVDFPSGRYADELCVT
                     ELAEVIWAVQMSTVEFHPWNTRCADVECPDEWRIDLDPQPGTGFAQARQVAMVVQEVL
                     AELGAVGWPKTSGGRGMHVYVRIEPRWSFAEVRRAARAFAVEVERRLPDLVTTAWWKR
                     DRIAAVFVDWNQNTRDHTIRGAYSARGVPEAVVSTPLRWEEVPDAEPGDFTLATVPER
                     FARLGDVHAGIDDAVFSLEPLLEWADRDAVNHS"
     gene            complement(7337..7612)
                     /locus_tag="VF788_10690"
     CDS             complement(7337..7612)
                     /locus_tag="VF788_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2631 domain-containing protein"
                     /protein_id="HEX8934638.1"
                     /translation="MAVSARRAGNPTTQGVDPQDEPSADWGWHGSFPVAGKLAGWFTA
                     LALFAMLIGNHHSHVEDVYLVGLGTLLVVMLLGSHWKAHKARRRWRD"
     gene            complement(7685..7957)
                     /locus_tag="VF788_10695"
     CDS             complement(7685..7957)
                     /locus_tag="VF788_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEX8934639.1"
                     /translation="MGILGWIVLGLFAGVIAKLIMPGNDPGGFIVTILLGIVGALIGG
                     FIGSAIFGRGLESFWNLQTWIIAIIGSLILLMIYRLAVGRRGVWRY"
BASE COUNT         1336 a         2681 c         2737 g         1351 t
ORIGIN      
        1 gtgctgacag ccaccggcgg ggatctggtg gaatcgctga ttaagcgcga tctgggcgtc
       61 aaagacatgg gtactgtgtt gcctggtcac ggtgggttga tggaccggct cgactccctg
      121 cttccctcgg cggtggtggc ctggttgctt ctgagcctgc tcgtcccgtc ctagaggtag
      181 ccgggccggc cgctgccgcg gaggttcaca atgagtcggt gaccaaccgg ggcgtgctgg
      241 ccagcccgaa catctggaac tggcccgagg tgtacgagcg ggagaatcaa gccgtcgacg
      301 ccgacgggtc gctatgggca gcattggccg atcgggtcga ctggggtggt gccgacgtcg
      361 tcgacgtcgg ctgcggagac gggtttcact tgcctcgatt cgccgagcgg gcccgcagcg
      421 tcgtcggcgt ggagccacat ccttcgttgg tgagtcgcgc ccgccaccgc gttcgcgacc
      481 agccgcacgt ccaggtgcgc gccggttgtg cggggcggct gccgctgcct gattccagcg
      541 ccgatctggt gcatgcccgc gttgcctact tcttcggtcc tggctgcgaa cccggcctgg
      601 ccgaggcgtc gcgagtgttg cgacccggtg gcgcgctggt cgtcatcgac ctggacggca
      661 cctacgcccc ttacggcgag tggctgtgca cggcggcgcc gcgctaccgg ccggtcgcag
      721 ccgaggcctt ttttgccgcc cagggcttcg actgtcaacg ggtggacacc atgtggcggt
      781 tcgatgatcg ccggaacctg gaggacgcgc tgcgcatcga gttcaccccc gcggtggccg
      841 cgcgggcgat cgcgcagacc ccgggcctga ccatcccggt gcgctaccgc atgcacaccc
      901 gccgcgcggt tgtctactcg agtacttggc gagtctggag gtgaacgtcg ggacccccgg
      961 aacgcaggtc agcgtaggcc tgggacagtg gatctgacat gactgtgctg cccttggtgt
     1021 tcgaggcccc acgccgcgga aagccgccgc gccacctcgc cgatctcgac cgtgaccagc
     1081 gccgcgccgc ggtgctagag ctgggtgagc ccgccttccg cgctgaccaa ctggcgcggc
     1141 actactttgc ccggctgagc accgatccgg tcaccatgac cgacctccca gcaacagtgc
     1201 ggaatcggct tgttgcggcg ctgctcccgg aattggccac tccggtacag cacctcggct
     1261 gcgatgacgg caccacccga aagacgctgt ggcgcgcggc cgacggtgcg ctcactgaaa
     1321 gcgtgctgat gcggtatccg gaccgcgcca cggtctgtat ctccagccag gccggctgcg
     1381 gaatggcgtg cccgttctgc gccaccgggc agggcgggtt gacccgcaac ctgtccactg
     1441 ccgagatcgt cgaccaggtg cgcgcggctg cggcggcgat gcgcgagggc gagctgagcg
     1501 gcgggtcagg tcggctgtcc aacgtcgtgt tcatgggtat gggtgaaccg ctggccaact
     1561 acccgcaggt cgtgacggcg ctgcgccgga tcaccgatcc ggccccggac ggcttgggcc
     1621 tgtcccagcg gtcggtgacg gtgtccaccg tgggtctggt gccggcgatc cggcggctcg
     1681 ccgaggagaa attgcacgtc acactcgcgg tgtcgctgca caccccggac gacgacttgc
     1741 gggacaccct ggtcccggtg aaccgccggt ggaaggtcgc tgaggttctc gatgcggccc
     1801 ggcagtacgc ggattccacc gggcgccggg tatccatcga gtacgcgctg atccgggacg
     1861 tcaatgacca gccgtggcgg gctgatctgc tcggtgggct gctggccgaa cgcctcggat
     1921 cgatggcgca tgtcaacctc atcccgctga acccgacccc gggcagcgaa tgggacgcca
     1981 gcccgctgcc cgtgcaggag gaattcctgg cgcgcgtgcg tgcggctgga gttgcctgca
     2041 ccgtccgcga tacccgcggc cgcgagattg ccgctgcctg cggacaactt gcggcatccc
     2101 agccagaacc caccaccgaa caggtccggt cgtagtccca ctgggtggtt cgaggctcgc
     2161 tcgccagcgg agtggctagt cgggaggcgc tgccgcggac gtgctgagga gttcggcggc
     2221 ggtggtgctg ccgtcgacga cggcggcggc gagctgggtg agccggtggt ggttacggcg
     2281 ggcgtaattc cggagcagcg tgaaggcttc gccggggttg atgccgtggc gttcggcgag
     2341 gacacctttg gcttgttcca gcaggacgcg actgttcagg gcagtctgga gctggtcgat
     2401 gagggtctcg ttgcggcgca gggagcgttc ctggatcagg ccgatggtgg cgacgtcgac
     2461 catggcctgg ccgatctggg tgaccgagcg gtccagctga cacgggtcgg cgtggaacaa
     2521 gttgaacgcc ccgatgatct gggcccgcag ccgcatcggc agggcatgca cggtccggaa
     2581 gccggccccg gccgctgcgg gtgcgaaccg gggccaccgg tcctcggcgg tagcgaggtc
     2641 ggggtgatcg accggctcgc cggcgcggta acaatccagg cagggcccat cgtcgttttg
     2701 cagttggaag agttccagca gcctgatgtt ctcgctggag gaggccatca cctggagccg
     2761 gccgcgggag tcggcgagca tgagcccggc ggcggagaca tcgagcagct ccacgcagcg
     2821 atccaccagg atgtgcagga attcgacgag gtcgaactcg tcgaccaggg tgtcggccag
     2881 ttcgacgaag gtctgggcta gtcgctcatc gttcattggt tcacctccgg tggattgggt
     2941 agaggaccac caggtggtgc actcaccagt ctcctccctg ccgaggcgct cagccagtgt
     3001 cctcctggtg ggaggctcat ctggtgtcct cgtgatcgaa tcggatgcgg cgggcaacca
     3061 cgtctatggc cacctcggac aacggccggt cgtcggcgaa cgcgcgggcc cgcaggcgag
     3121 tgaaggcgtc acccacgctg atacccagct gaacagagat catgcctgtg gcctggtgca
     3181 cctcgggtcg ggtctcagag tgccgataac tggtggactg gccctcctgg gtgacgatcc
     3241 cgtcctgttc atcgagcagc agttccaagg ccaactccga gtacacccac gccgcggcca
     3301 agtctttggc cccaagccgg cctgggcggt cgacgtagag ggccagtacc ccgccgcgga
     3361 tggcaccgat gcgcagcggc agcacgaaca tcgctcgggc gccgatgtcg atggcctgag
     3421 gggcgaacag cggccaccgc gcctggtatg cgggtgcgtc gaggtcctcg atcaggatgg
     3481 ccccggtgcc ggcgaggact tcgagggtgg gaccttcacc gatggtgagt tgcagttcct
     3541 ccagctggcg gctgagcggg ccagtggcac agatcagctc cgagaccagg aagctgcccg
     3601 acatcgccac ggccactccg gtgaccggca acccatcggc tgcagtttgg caaagggtgt
     3661 gcacggatac gggaacgccg agcgcgccgg cgtgagcggt gatcgcgtcc catatccgat
     3721 cgacctggct ggcctcggtc actgtccacc gacctcggta gcgacccggt gatggctccc
     3781 gctggttcgc tcggcgacgg gagcggcaaa ccgggtggca gcaccggacc gaatgcactc
     3841 ggacacactg gtcggcgcgt acgtgcggac gcccgccagt gccccacgtc ggggacgctg
     3901 aaacgatctc gggtcaacgg tcacgaccat atcgccatct cgatcgggat gtgcggttcc
     3961 ccagggcaac ctgggccatg gtcagtagct tttgtcattg tgcggcgaat cggaatcgga
     4021 tgtgatggtt gacaccggtc agcgcaagcc aaccttgctg cgagggcgct aggcccgccg
     4081 cccagctcag tacgtcgagc agatcctcat cgcagcagtt gacgtcggtg aggtccacgg
     4141 tcaggtaccg ggctccggta tccaggaggg cgccgagttt gttccggagc cgctgggcgc
     4201 catggttatc gatcggacct tgcaggatca cgcggacgta ctcggcgcca ccccgcaccg
     4261 tggtgatcgt cagctcagct gaaccttcca tggctctccc gtcggcacca cttgttcggt
     4321 gccgccaggg tccggggcag cgggtcacac cagctcgccg cgccccgtca ccctcgcatc
     4381 ggcatggcga atgagaggga ttcgaagctc ggggccggag gatgtgcgta aaaactatca
     4441 ggatacccgt ggtagcacgt gggcccagat gagaaacgca cgtctcggac ttcgcggcgc
     4501 ttgcgcccgg gagatcgctg ccgcctgcgg ccagctcgcg gcttcccagc catgatggtt
     4561 gattgggtat gagcgtgttg ttattccagg ccggactcac gcagcgtgat gttcagtcgt
     4621 ccgttgtaga ggccaatgtc cccgtacccg ggggcgggca gcgttttggg cacaccatgg
     4681 aaggcgaatc tggctggtcc gccgaacacg aataggtctc ctgattccaa gacgacgtcc
     4741 cgccacggcc gaccgcgatt ttctgtattg ccgaagcgga atacgcaggt gtcaccgaag
     4801 ctcagcgaca cgaccggcgc cgggctgcgc tcatcgcggt cctgatgcat gcccatccgg
     4861 gctgtcgcgt catagtagtt gaccaaagcg atatccggcc ggtagcgatg cccagcttgg
     4921 ggatccgcgt aagcctcggc tacggcccgc cggccgagat cagccagcca gtccggaaat
     4981 ggtttcaccc gggatctatc gccatcgtcc acggttcgca agtaccggta gggataccaa
     5041 tgccagccga ggcagagtgt gcgcacggac atcgccgagc cgttgggcaa gcggatggtc
     5101 cgcatgcccg caggtggctg tgcccattcc cggcaggcca gaaccagccg ccgttgctca
     5161 tccaggctga gccagcggga aaggtgcacc gcgcccggtg cgatctcggt cgctggcctg
     5221 ggcagcaact ccatgatcac ctacctccgc cgtagagccg gtgaccagca agccggctcg
     5281 gaacaccagg cgcccaccag tggttgcgac cgccccaacg ctacggttgt ggaggggccc
     5341 agcgacactg agagccgtgc agctgcctgt catgcccccc gttgccccga tgctggccaa
     5401 gcctgcgacc gaaatcccgg ctggccagca ctatgaaccg aaatgggacg gcttccgctc
     5461 catcatcttc cgcgatggtg acgaggtcga aatcggtagc cgcaaggaac gtccgatgac
     5521 ccggtacttt cctgaggtcg tggccgcggt gctggcgaac tttccgcccc gcgcggtgat
     5581 cgacggtgag atcgtcatcg ccaacaccga acgaaacact ctcgatttcg aagcgttgca
     5641 gcaacgcatc caccctgccg ccagccgggt gaagctcttg tccgagcaga ccccggcgag
     5701 cttcgtcgcc ttcgacctgc tggcactcgg tgatgaggat ctcactgaac aaccactcgc
     5761 ccaacggtgg gctgcgctcc aggacgccct cgtcggagca gcggcgccgg tgcacctcac
     5821 ccctgccacc cgggacctcg agctggcccg gcggtggttc gatcagttcg agggtgccgg
     5881 cctggacggc ctgatcgcca agcagctcga tctgccctac cagccggaca agcggacaat
     5941 gaccaagatc aagcatgagc gcaccgccga ctgcgtcctc gccggctacc gggtgcacaa
     6001 gtccggacct gacgcccttg gctcactgct gctcggcctc cacgacgacc ggggggtgct
     6061 ggtgtcggtg ggtgtgatcg gtgcgttccc gatggatcgg cgccgggagc tgttggtcga
     6121 gctgcagccg ctggtcacca ccttcgacga ccacccgtgg gcctgggcgc ggcaggagga
     6181 gggagagcgc acgccgcgta agtccgaaac cagccggtgg aacgccggca aggatctgtc
     6241 gttcatcccc ttgcgccccg agcgggtcgt cgaggtccgc tatgactacc tggaaggtgt
     6301 ccggttccgc cacaccaccc agttcgtccg ctggcgcccg gaccgcgacc cgcgctcctg
     6361 cacttacgag cagctcgagc ggccggtcgg cttcaacatc gccgacgtgc tcacgagtgg
     6421 ttgaccgcgt cccggtcggc ccactcgagc aggggttcca gggagaacac cgcgtcgtcg
     6481 atgccggcgt gtacatcgcc caggcgggcg aaccgctcgg gcaccgtggc cagggtgaag
     6541 tcgcccggtt cggcgtcggg cacctcttcc cagcgcagcg gggtggacac caccgcctcg
     6601 ggcacccctc gcgccgagta ggcgccgcgg atggtgtggt cgcgggtgtt ctggttccag
     6661 tcgacgaaga ccgcggcgat ccgatctcgc ttccaccacg cggtggtgac cagatcgggt
     6721 aggcgccttt ccacttcaac ggcgaaggcc cgggccgccc ggcgcacctc ggcgaagctc
     6781 cagcggggct cgatccgcac gtagacatgc atcccgcggc cgccggaggt cttcggccag
     6841 cccaccgcgc cgagctcggc gagcacctcc tgcaccacca tggccacctg gcgcgcctgc
     6901 gcgaagccgg taccgggctg cggatccaga tcgatgcgcc actcgtcagg gcattcgacg
     6961 tcggcgcagc gggtattcca gggatggaac tccacggtgc tcatctgcac cgcccagatc
     7021 acctcggcca attcggtgac gcacagttcg tccgcgtagc gcccggaggg aaagtccact
     7081 cgcacggtgt gcacccacgg cggagcaccg gcaggcagcc gtttctggtg caccttgggg
     7141 ccggtgactc cgctggggaa ccggtgcagc atgcacggac gctcacgcag tgcccgcacg
     7201 atgccctcgc ccaccgaaag gtaataacgg acgagatcga tcttcgtctc cccacgggcg
     7261 ggaaaataga cccggtccgg attggtgatc cggacggttc ggtggccgac ttccagctcg
     7321 agggccgctg cgccggtcaa tcccgccagc gccgcctggc tttgtgggct ttccagtggc
     7381 tgcccagcag catcaccaca aggagcgtgc cgagcccgac aaggtaaaca tcctcaacgt
     7441 ggctgtggtg attgccgatg agcatcgcga acagtgcgag agcggtgaac cacccggcaa
     7501 gcttgccggc taccggaaag ctgccgtgcc agccccagtc ggccgacggt tcatcttgcg
     7561 ggtctacgcc ctgggtagtg ggattgccgg ctcggcgggc gctcacggcc atatcagcat
     7621 catcgcatac caccgaggga ccggcgggat ccggccgcat gccgctcccg ccagccccgc
     7681 agggtcagta gcgccacact cctcgacgcc cgacggcgag ccggtaaatc atcagcagga
     7741 tgagtgatcc gatgatcgcg atgatccacg tctgaagatt ccagaaactc tccagccccc
     7801 ttccgaaaat ggcggaaccg atgaacccgc cgatcagggc cccgacgatg cccagcagta
     7861 tggtgacgat gaacccgccg gggtcattgc ccggcatgat caacttagcg atcacaccgg
     7921 cgaataaccc gagaacaatc cagccgagaa tacccatgcc ccaactccct ccgtgttcac
     7981 gcacgatcag tgtgatcggt gtgaggccac ctcgcacgca caaagatgct gcggtcggga
     8041 acaatgacct ggatggcccc atcaccgcgg ctgcgctcgg tactactgct gggcagtacc
     8101 gggtc
//
LOCUS       DASVXZ010000514         2274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1102878, whole genome shotgun sequence.
ACCESSION   DASVXZ010000514 DASVXZ010000000
VERSION     DASVXZ010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102878"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..119)
                     /locus_tag="VF788_10700"
     tRNA            complement(47..119)
                     /locus_tag="VF788_10700"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(84..86),aa:Ala,seq:cgc)
     gene            complement(156..866)
                     /gene="glpR"
                     /locus_tag="VF788_10705"
     CDS             complement(156..866)
                     /gene="glpR"
                     /locus_tag="VF788_10705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase receptor GlpR"
                     /protein_id="HEX8934640.1"
                     /translation="MPSSLIFAALAGAWLVVLVPMVAKRRQEVVRTAESALAARVLRR
                     PNHSCSAPQRGKEVHMTGERIVQQEHPLDERRYRAGRGGYDPEVAAQQARAKYVFRQR
                     VVLGLAFGALATVVLAYTVSGLLWWIHAALDVGLVGYLGYLRRQVRIEEEVRQRRAAR
                     LVGSRPRPSAADPLNDSPVDVANDGEEPDQESPVWPAEELSAAHPSAVALDFDDEDPI
                     FDELRPAFEPPYRRAVGE"
     gene            complement(1001..1654)
                     /locus_tag="VF788_10710"
     CDS             complement(1001..1654)
                     /locus_tag="VF788_10710"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX8934641.1"
                     /translation="MFGSGPDSRHPGWPVRLGPVKVAAGDVLLRPVRLRDGAAWSRLR
                     LRDENYLRIWEPEAEGTWAERFTTMAWPVMCSGLRATARRGQALPFAVTLDGRFVGQI
                     TLGNLVRGSLRSAWVGYWVESQAAGGGVGTAAVALAVDHAFGPVGLHRIEATVRPENV
                     ASLRVLAKLGFRDEGLLQRYLEVDGAWRDHRLLAMTRDEIGAGLVSRLIRSGHAHHP"
     gene            complement(1661..>2274)
                     /locus_tag="VF788_10715"
     CDS             complement(1661..>2274)
                     /locus_tag="VF788_10715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEX8934642.1"
                     /translation="ALAAAARDAGAEVHRVGIVSSDPSRLREAVEGRLLLSEIVVVTG
                     AVGGAVGEQLCGALAELGPLDIERVAMHPGSVQGFGRLGSDSVPTFLLPSNPISALVV
                     FEVLVRPLIRIALGKRNPYRRTITARLLSPVTSTAGRRGFLRGQLLRDPDTGEYLVQP
                     LGTSGAHLLASLAEANCLILVDSDTIEVSVGEHVAVSFLAQRG"
BASE COUNT          425 a          822 c          699 g          328 t
ORIGIN      
        1 cctgcacccg gcctgaagat caccggataa aggctctgac cagctgtgga gctgagggga
       61 atcgaacccc tgaccttctc gatgcgaacg agacgcgcta ccaactgcgc tacagccccc
      121 cgcggtgcgc agaaagttta gcagcaggtc gacggctact cgccgaccgc ccgacggtag
      181 ggcggctcga atgcaggccg cagctcatcg aagatcgggt cttcgtcatc gaagtccagc
      241 gcgaccgccg aggggtgcgc agcggacagc tcttcagctg gccataccgg cgattcctgg
      301 tcgggctctt caccatcgtt ggctacgtca accggcgagt cattaagcgg atcagcagcg
      361 gaaggcctgg gtcgagaacc gacgaggcgt gcggcccgac gttggcggac ctcctcctca
      421 atacgcacct gccgacgcag atagcccagg taaccgacca gccccacatc caatgcggca
      481 tgtatccacc acagcagacc ggacaccgta taggccagca ccacggtcgc aagcgctccg
      541 aaggccaaac ctaggaccac acgctggcgg aacacgtact tcgctcgggc ctgttgcgcg
      601 gcgacctccg gatcgtaacc tccgcgaccc gctctgtacc gacgctcgtc caacgggtgc
      661 tcctgttgga cgatccgttc gccggtcatg tgcacctcct taccgcgctg gggcgccgaa
      721 caagagtggt tgggccgacg cagtacccgg gcagcaagcg cagattcggc ggtgcggacc
      781 acctcttgcc gtcgcttcgc aaccatcggg acgaggacca caagccatgc tccggctagc
      841 gccgcgaaga tcagcgagct gggcactcct cgccccccac cccgtccgcg atcctgagct
      901 gtcctgtacc taggtcgtta tcacggtagt catcgcaatg agccggatgc cggaggcgcg
      961 ccgtgatgat cgcttacacc acagcgcgac acgccggggg ttaagggtgg tgggcgtgac
     1021 ctgagcggat taggcgggac accaggccgg cgccgatctc atctcgagtc atggcgagca
     1081 gtctgtggtc cctccaggca ccgtcaactt ctaggtaacg ttgcagcagg ccctcatcac
     1141 ggaaaccgag cttggccagt acccgtaggc tcgccacgtt ctccgggcgc acggttgcct
     1201 caatccggtg cagcccgacc ggcccaaacg cgtggtccac cgctagagcc accgctgcgg
     1261 tcccgacacc accgccagcc gcttgggact ccacccagta gccaacccag gccgagcgca
     1321 gcgaaccccg taccaggttg cccagcgtga tctggccgac gaaccgtcca tccaaggtga
     1381 cagcgaaggg cagcgcctgc ccccgccggg ctgtcgcgcg cagcccgctg cacatcaccg
     1441 gccaggccat tgtggtgaac cgctccgccc aggtgccttc cgcctcgggc tcccagatcc
     1501 gcaggtagtt ttcgtcgcgt agcctcagcc ggctccacgc tgcgccgtcg cgcagccgca
     1561 ccggacgcag cagcacatcg cctgcggcga ccttcaccgg gcccagccgc accggccagc
     1621 cggggtggcg gctatcagga ccagacccga acacgtcgcc tcatccacgc tgggcgagga
     1681 agctcacggc cacgtgctcg ccgacagaca cctcgatggt gtccgaatcg acgaggatca
     1741 ggcagttcgc ctccgccaac gaggccaaca ggtgggcacc ggaggtaccg agcggctgca
     1801 ccaggtactc cccggtatcc ggatcgcgca gcagctggcc acgcaggaac ccgcgacgac
     1861 ctgccgtgga tgtcactggg gagagcaggc gcgcggtgat ggtgcggcga taaggattgc
     1921 gcttgcccag cgcaatccgg atcagcggcc gcaccagcac ctcgaagacc accagggcgc
     1981 tgatcggatt gctcggtagc aggaaagtgg gaaccgagtc cgagccgagc cggccgaacc
     2041 cctgcaccga accggggtgc atcgccactc gctcgatatc cagtgggccc agctcggcca
     2101 gcgcgccgca taactgctca ccgactgctc cgcccaccgc gccggtcacc accacgatct
     2161 ccgagagcag cagcctgccc tccacggctt cgcgtaaccg ggacggatcg ctggacacga
     2221 tcccgacccg gtgcacttcc gcgccggcat cacgagcggc cgcggccagc gcgt
//
LOCUS       DASVXZ010000515         2433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1103027, whole genome shotgun sequence.
ACCESSION   DASVXZ010000515 DASVXZ010000000
VERSION     DASVXZ010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1103027"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(477..1214)
                     /locus_tag="VF788_10720"
     CDS             complement(477..1214)
                     /locus_tag="VF788_10720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003101882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8934643.1"
                     /translation="MTSTSSRVAIVTGGSRGIGRAVAERLGAEGFAVVVNYAGNKTEA
                     DAAVEVIESKGARAIAVQADVADEVAVSAVFDTAEESFSGVDVVVHAAGIMALGMVAD
                     MDLNVFDRQVRTNLRGTFVVDQQAARRVRCGGAIINFSSSVLALQAPTYAGYAATKGG
                     VEAMTLILARELRGRDITVNAVAPGPTATALFLEGKDEETIQRLASQAPLERLGAPGD
                     IAEVVAFLAGPARWINGQVLRANGGIV"
     gene            complement(1707..2116)
                     /locus_tag="VF788_10725"
                     /pseudo
     CDS             complement(1707..2116)
                     /locus_tag="VF788_10725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803700.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
BASE COUNT          424 a          862 c          755 g          392 t
ORIGIN      
        1 gacctggtcc attcgctccg cgatcgccgt gagcacgacg tgcgcctggc gtttgctgag
       61 gcagtgcacg accgcatcat cgacgtagcg ttcgaaccag accccgagga actcccggac
      121 catccaggca tcgaacgcgt agtggaggaa caggttggcc accacaggcg agaccgcaga
      181 accctatggg gtacccggtc acactgctgc aaggtcccct caggcagttg cagtggagcg
      241 tgcagccacc gccgcacata cagcaccacc catagcaggt cggtattcgc ttccaccgcc
      301 ttgatcatca gctcccacgc gacgctgtcg aagaactttt ggatgtccaa atcaatcacc
      361 cagtcggtct tccagcacct cctgcagcag gaggccaccg cgtccagcgc ggaacggttc
      421 gggcaccgtg gatgaccggt tcggcaccca caggcagggc tctgcgggag gaagggctaa
      481 acgatgccgc cgttggcgcg caggacctga ccattgatcc accgggccgg accggcgagg
      541 aacgccacga cctcggcgat gtcgccgggg gcacccaggc gctccagcgg ggcctgcgag
      601 gccaggcgct ggattgtttc ctcatccttg ccctcgagga acagcgcggt cgcagtgggg
      661 ccaggcgcca cggcgttgac ggtgatgtcg cggccgcgca gctcacgggc caggatcaga
      721 gtcatggcct cgacaccgcc cttggtggcg gcgtagcccg cgtaggtggg tgcctgcagt
      781 gccagcacgg agctggagaa gttgataatc gcgccaccgc agcgcacccg gcgcgcggcc
      841 tgctggtcga ccacgaacgt gccgcgcaag ttcgtgcgca cctgccggtc aaacacatta
      901 aggtccatat cggcgaccat gcccagggcc atgatcccag cggcgtgcac gaccacgtcc
      961 accccgctga agctctcctc cgccgtgtcg aacaccgcag aaacggccac ctcgtcggcc
     1021 acgtcggcct gcaccgcgat cgcccgggcg cccttgctct cgataacctc gacggccgcg
     1081 tcggcctcgg tcttattgcc cgcgtagttc acgacgaccg cgaagccctc agcgcccagg
     1141 cgctcggcga ccgctcgacc gatgccgcgc gagccaccgg tcacgatcgc cacgcgggag
     1201 gaggtgctgg tcatagtctc tctccttcgg atgacacatc ggtgcatgag cagccctcag
     1261 acaaatcccc gaagtggaaa ataccgccac atcccctccc actccccgcg gttcatcacc
     1321 accgcacgca cagcagcgat caacatcgcg gacataaccc gctggccgca ccccggcgct
     1381 gccgcgctcg ggtctctggc cacccctgtg ctcggtttgg acttccgcgc accaacacag
     1441 ccaactccga ggggccgcaa caccagccgg ttcgacccgc agagacggga aggggcggcg
     1501 caagcttcac acagcgcgct catcggcgtc attagatgag cacttccgag cggtctcgtc
     1561 aagcgtgtgc cgaggctgaa cgtggacggt aaggcatgcg gagcaggacg agactcgccg
     1621 cgttcctcca tggcggtccg cttggcaccg cgcatggata ttcccggcaa catcgaccac
     1681 accacccagc ctcgccgcca gtagcaatcg gcgtagggcg ggtatgccgc cacggcccgc
     1741 tcccaccact cggcccgctc agcgccctca acctcgcgcg cgacgtagtc cttggtcaca
     1801 gtcccgtcct gcagcgagaa ctcgggatag gccttgatgt tgtggtacca aatcgggtgc
     1861 tctgaggcgc cgcccttgga cgcgacgacg gcgtacctgc cgtcgtgctc cacccgcatg
     1921 accggggtgt agcgcaactt gccggtcttc gcgccgcgca gcgtcagcag cacgatcggc
     1981 gacccgagca cctcgatgcc ctccgtggtc ccggtctcca ggatcttgct cgtctggtct
     2041 gcacccaatc cgtggggcta agttctacgg tctcgtctgc cacgtccaag atcaacacgc
     2101 cgcgcaccac ggtcattccc gtcagacggt tcgtgcgagg gctgttgaac ccgcgctcgg
     2161 cggcataaga ggcgttgtac ccggcgagtc acccctgaat gactatgcgc tgggtggcag
     2221 ctgctgaggg catcctgatc tagttattgt gatcgtttga caggccggtt gtggcgctcg
     2281 tcgggttcgc gccggccgag ggtagcggcg tggttcactg ggtccgtgac gctcctgccc
     2341 cggccacggc gtcccgccgc tgggcggacc ggaaccgctg ctggtaggcg ctcggtgaca
     2401 ccccgagtcg ggccacgaac gcgcggcgta acg
//
LOCUS       DASVXZ010000516         5518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_862198, whole genome shotgun sequence.
ACCESSION   DASVXZ010000516 DASVXZ010000000
VERSION     DASVXZ010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5518
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_862198"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..994
                     /gene="rfbD"
                     /locus_tag="VF788_10730"
     CDS             104..994
                     /gene="rfbD"
                     /locus_tag="VF788_10730"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEX8934644.1"
                     /translation="MTPVLSLLVTGGRGQLGRDLVAAATRAGISRIRAPGSAELDITD
                     SVAVSDAVAAAAAGGARLVVINAAAYTAVDAAEREGAVRAHAVNAEGPENLARACAIH
                     RVHLLQVSTDYVFAGESGEPNQVDGPTAPGTVYGRTKLAGERAVLASQARAHVVRTAW
                     LYGAHGGNFVRTMARLARGCELVRVVDDQHGNPTWTADLADGLIALAAAADRVPVRVL
                     HCVNAAATTWFGLARAVFTEVGADPDRVQPCSTTEFPRPAPRPANSVLDTAGWAATGL
                     PELRHWRHALHAAATAGVLG"
     gene            complement(1008..2132)
                     /locus_tag="VF788_10735"
     CDS             complement(1008..2132)
                     /locus_tag="VF788_10735"
                     /inference="COORDINATES: protein motif:HMM:NF025182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4185 domain-containing protein"
                     /protein_id="HEX8934645.1"
                     /translation="MLAHRARIGAVVATLSAATLAVTVTAAAPGSAQTGPVSQASAVA
                     VITGAKSINATEGRYEVKGTDLGIMWTDERGRILAAFGDTFGSGWAGVSSGFAKPATI
                     DWRSNTLARSTDRNPSDGMSFDNFVIDRPGHAKELLPSLKKDGVEMTKIPTGGINIDG
                     RNFLAYMSIRSFTQPGHWITNYNGVAYSDDNGQTWTDVPSARRENTAALDGKFQMIAY
                     ARGDGFVYAFGTPNGRFGDAHLARVPERQLLDNSAYEYWTGKGWERGSSEIAVPIVTG
                     PVGELSVRYDKELSSWEMMYLDESAKAIVLRLAPSPAGPWGTPTQVATASEYPDLYGG
                     FMNPDSQGTDLYFTMTQYKSYNVMMMHTKLPASVVRNGKR"
     gene            complement(2425..3540)
                     /locus_tag="VF788_10740"
     CDS             complement(2425..3540)
                     /locus_tag="VF788_10740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HEX8934646.1"
                     /translation="MSGDASHGSHRHSRVLIDGGPLLGQRSGIGRYTAALLDELALRS
                     DVEVMVTAFTARGQRALRAAVPPGVRVRGGPVPARALHALWQRVSWPPTELLAAGSDV
                     LHATNFVLPPSKRARGVVTVHDLAFLDHPDQLAPQQRNLPELVRRSVARAAVVCTPSD
                     AVAQLVARRLDIAAEQIVVTPLGVDRTWLGATAPTEALRTTLGLPWRYLLFVGAAQPR
                     KGLDVLLAAHDSRPELAPLVVAGPAGWGPAPAISSRVHTVGYLGEADLRSVVAGAIAV
                     ILPSRDEGFGLPVLEAMAAGTPVVCSDLPALREVAGGLANLVPAGDPAALAGALAAVD
                     RADGDREGVALRRAHAARYTWRACAETTVAAYRRALS"
     gene            complement(3537..>5518)
                     /locus_tag="VF788_10745"
     CDS             complement(3537..>5518)
                     /locus_tag="VF788_10745"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8934647.1"
                     /translation="MFVRRAVFEQLGGFDERFFMFCEDVDLGWRLNLRGYRVRYEPRS
                     IAYHRHHASLHGADPARETYLLERNALAALYKNVSDATLATVLPAALALTVRRATARG
                     ECDPTELELTRRTGLDDMGGTDATGPMAVPRVTMAGVYAIDRFVEMLPSLTASRHAEQ
                     AARVRTDADLLPLMRNALERTSPEIPYLLAHDSIVEALGVEGVYGARRRILVITADAV
                     SARMAGPAIRAWNMAEVLSGEHEVRLLSLNQHCAPPAAEFEVRHISPHAIGPELKWAQ
                     LIILQGHVLEQIPSLKTSNHVVVVDIYDPMHLEQLEQARDLGEQARTQIVDAVTGVLS
                     NQLRRGDFFLCASERQRHFWLGHLAAIGRLSPIVYDADPTTRSLLAVAPFGLSGKPPQ
                     RTGPGLRDTLCLGPREKVVLWAGGVYSWFDPLTLLHAVHALRPEHDDLRLVFLGMRHP
                     NPDVPEMGMAGQTRRLAHTLGLTGEQVFFNETWVPYAERQNWLLDADAGVTTHFEHVE
                     TTFAFRTRVLDYLWSGLPIVTTDGDSFAELVRTEQLGVVVPAQDPVALATALQRVLYD
                     DAFATGCRDRIAAVAQRYTWEAVLAPLVGFCRHPRPAPDRLRDTALVTPDRRAGTTGA
                     LRRDAALVREYLAEGGPREVARRAAGRVRRWVKHP"
BASE COUNT          876 a         1850 c         1908 g          884 t
ORIGIN      
        1 cgcagctcgg ctactcccca caaacggact tcgcccacgg gctggccgag acggtgcgct
       61 ggtacgccgc gcaccgggac tggtggcaac cgctgaaaac gacatgaccc cggttttgtc
      121 gctgctggtt accggcgggc gaggacagct cggtcgggac ctggtggccg cggcgacccg
      181 cgccgggatc tcccggatcc gcgcgccggg atcggccgag ctcgacatca ccgattccgt
      241 agcagtatcc gatgccgtcg ccgcggcggc cgctggtggt gccaggctgg tggtgatcaa
      301 cgcggcggcc tacacggccg tggacgccgc cgagcgggag ggtgctgtgc gggcccacgc
      361 ggtcaacgcg gagggacctg agaacctggc acgggcctgc gccatccatc gggtgcatct
      421 actgcaggtc tcgaccgact acgtcttcgc cggtgagagc ggcgagccca accaggtgga
      481 cggtccgacg gcgccaggca ccgtttatgg ccgcaccaag ttggcggggg aacgcgcagt
      541 cctggcctcg caggcccgcg cgcatgtcgt gcgcaccgcc tggctctatg gagcccacgg
      601 cggcaacttc gtccgcacaa tggcgcggtt ggcccgcggg tgcgagctcg tgcgggtggt
      661 agacgaccag catggcaacc cgacttggac ggcggatctc gccgacggcc tgatcgcgct
      721 ggcggcggca gctgaccggg tgccggtgag ggtcctgcac tgcgtcaacg cagccgccac
      781 cacctggttc ggcctggcca gggcggtctt caccgaggtc ggtgccgatc ctgatcgggt
      841 gcaaccctgt agcactacgg agtttcctcg gcccgcgccg cgcccagcga actcggtcct
      901 ggacaccgcc gggtgggccg ccaccgggct gcccgagttg aggcactggc gtcacgccct
      961 ccacgccgcc gccaccgcgg gggtgctcgg ctaactattc ggtgatctca gcgttttccg
     1021 ttgcgaacca cactggccgg tagcttggtg tgcatcatca tgacgttgta gcttttgtat
     1081 tgggtcatgg tgaagtacag gtcagtccct tgcgaatcgg gattcatgaa tccgccatag
     1141 aggtccgggt actcgctggc ggtggcgacc tgggtcggtg tgccccaagg gccggccggg
     1201 ctcggcgcga gccggagcac gatcgccttg gcagactcgt ccaagtacat catttcccag
     1261 ctgctcagct ccttgtcgta gcggacggac agctcaccga ccggacccgt cacgatcggc
     1321 acagcgatct cgctgctccc gcgttcccag cccttgccgg tccaatactc gtaggcggag
     1381 ttgtcgagca gttgacgttc gggcacccgg gcgaggtgag cgtctccgaa tcgaccgttg
     1441 ggagtgccaa aggcgtagac gaagccgtct ccccgggcgt aggcgatcat ctgaaacttc
     1501 ccgtcgaggg ccgcggtgtt ctcccggcgc gcgctcggca cgtccgtcca ggtctgcccg
     1561 ttgtcgtcgg agtaggcgac gccgttatag ttcgtgatcc aatgcccggg ctgagtgaag
     1621 ctccgaatcg acatgtaggc caggaagttg cggccatcga tattgatccc gccggtcggg
     1681 atcttggtca tctcgacgcc gtccttcttg agcgagggca gcagctcctt ggcatggccg
     1741 gggcggtcta tgacgaaatt gtcgaaggac atgccgtcgg atggattgcg gtctgtgctg
     1801 cgggccagcg tgttcgagcg ccaatcgatc gtggccggtt tggcgaaccc actgctgaca
     1861 ccggcccatc ccgatccgaa cgtatcaccg aaggcggcga ggatccgtcc tcgttcgtcg
     1921 gtccacatga tgccgagatc ggtgcccttg acctcgtagc gcccttcggt cgcgttgatg
     1981 gacttggcgc cggtgatcac ggcgaccgcg ctggcctgac ttaccggccc cgtttgagct
     2041 gacccgggtg ccgccgcggt gactgtgact gctaacgtag ccgcgctcag cgtggcgacg
     2101 actgccccga ttcgagctcg atgagccagc atcgtcctcc ccctcctgct ctaaggcgtg
     2161 cgccatcgcg cggacacagt tctgcgccag cgttgatgta gctctcagcg acatcccccc
     2221 gccctcgaaa ggggggaaat cggcccctcc cactgcttcc ggtagttagt gcgcgactcg
     2281 tcgtatagta acgttatagt aacgttactt tcgctagccc atgtgggtga aacaagctgg
     2341 atcgatcgat aacacggcgt gtccggccct catgcccggt gtgtccgttg tttgtgcccg
     2401 gtgtgtcggc tgtggggtgc ccggttagct cagcgctctg cggtaagcag cgaccgtcgt
     2461 ctcagcacag gcgcgccagg tgtagcgcgc cgcgtgggcc cgccggaggg ccacgccctc
     2521 acgatcaccg tcagccctgt ccaccgcggc cagcgcacca gccagggcag cgggatcacc
     2581 agctgggacg aggttggcga gccctccggc gacctcccgc agcgcaggaa ggtccgagca
     2641 caccaccggt gtcccggcgg ccatcgcctc cagcaccggt aggccgaaac cttcgtcacg
     2701 cgaaggaagg atcactgcga tcgcgccggc cacgacgctg cgaaggtccg cttcaccgag
     2761 gtagcccacc gtgtgtaccc gggaagaaat ggcgggcgca gggccccagc cagccggccc
     2821 ggcgacaacc agcggcgcga gctcgggccg agaatcgtgc gcggcaagca gcacgtccag
     2881 accctttcgt ggttgcgctg cgccgacgaa caacaggtac cgccacggca gccccagcgt
     2941 tgtgcgcaac gcctcggtgg gggcggtggc gccaagccag gtgcgatcca cgccgagcgg
     3001 agtgaccaca atttgctcgg cggcgatatc gagccggcgg gccaccagtt gcgccaccgc
     3061 gtcgctgggc gtgcacacca ccgctgcgcg cgccaccgaa cgcctgacca gctcgggcag
     3121 gttgcgctgc tgcggagcca gctggtctgg gtggtccagg aacgccaggt cgtgcacagt
     3181 cacgacgccg cgggcgcgct tggacggtgg cagcacgaag ttggtggcgt gcaggacatc
     3241 actgccggcg gcgagcagct cggtgggcgg ccagctcacc cgttgccaca aggcgtgcaa
     3301 cgcccgagcc gggaccggcc ccccacgcac ccgcacccct ggagggaccg cggcgcgcag
     3361 cgcccgctgg ccgcgagcgg tgaacgcggt gaccatcacc tccacatcgg atcgaagggc
     3421 cagctcgtct agcagcgcgg cggtgtagcg accgatcccg ctgcgctgtc ccagcagggg
     3481 ccctccgtcg ataagcaccc gtgagtggcg atgcgagcca tggctcgcat cgccactcac
     3541 gggtgcttca cccaccgccg cactcgccca gctgcccgcc gcgcgacttc gcggggaccg
     3601 ccctcggcga ggtattcgcg caccagggcg gcgtcacggc gcagcgcgcc ggtcgtgccg
     3661 gctcggcggt cgggagtgac gagcgcagtg tcgcgtagcc ggtcgggcgc gggtcttggg
     3721 tgccggcaga acccgaccag cggcgccagc accgcctccc acgtgtagcg ttgggccacc
     3781 gctgcgatcc gatcccggca gccggtggcg aaggcgtcgt cgtagagcac ccgctgcagc
     3841 gccgtggcca gcgccaccgg gtcctgcgcg ggcactacca cgccgagctg ctcggtgcgg
     3901 accagctctg cgaacgagtc gccgtcagtg gtcacgatgg gcagccctga ccataggtaa
     3961 tccagcaccc gggtgcggaa agcgaaggtg gtctcgacgt gctcgaaatg ggtggtgacg
     4021 ccggcgtcgg cgtcgagcag ccagttctgc cgctcggcat agggtaccca ggtctcgttg
     4081 aagaacacct gctcaccggt gagccccagg gtgtgagcca gccggcgagt ctgaccggcc
     4141 atgcccatct cgggtacgtc ggggttggga tgacgcatcc ccaggaacac cagccgcaga
     4201 tcgtcatgtt cggggcgcag cgcgtgcacc gcatgcagaa gggtcagcgg gtcgaaccag
     4261 gagtagacgc ccccggccca caacacgacc ttctcccgcg ggcccagaca tagcgtgtcg
     4321 cgcaaaccgg gtccggtgcg ctgcggcggc ttaccggaca atccgaatgg tgccaccgca
     4381 agcagcgagc gggtagtcgg gtcagcgtcg tagacgatgg gggacaaccg tccgattgcg
     4441 gcgagatgtc ccagccagaa atgtcgctgc cgttctgaag cgcacaggaa gaagtcgcca
     4501 cggcgcagct ggttggacag cacaccggtg accgcgtcga cgatctgagt gcgcgcctgc
     4561 tcgccgaggt cccgggcctg ctcaagttgc tcgaggtgca tcgggtcgta gatatcgacg
     4621 accacgacgt ggttagacgt cttgagcgac ggtatctgct cgagcacgtg gccttgcaga
     4681 attattagct gggcccactt cagttcgggg ccgatcgcgt ggggcgagat gtggcgcacc
     4741 tcgaactccg cggcgggagg tgcgcagtgc tggttgaggc tgagcaggcg cacctcgtgc
     4801 tcgccggaga gcacctccgc catgttccag gcccggatcg ccggcccggc catccgggcg
     4861 gagaccgcat ccgcggtaat gaccaagatc cgtcgccgcg ccccgtacac tccctccacc
     4921 ccgagcgctt cgacgatcga gtcgtgtgcg agcaggtagg ggatctcggg cgaggtgcgt
     4981 tccagggcgt tgcgcatcag cgggagcaga tcggcatcgg tgcgcacccg ggcggcctgc
     5041 tcggcgtgtc gcgatgcggt cagcgagggc agcatctcca cgaaccggtc gatggcgtaa
     5101 accccggcca tggtcactcg gggtaccgcc atcggaccgg tggcgtcggt cccccccatg
     5161 tcatcgagcc cagtgcggcg ggtcagctcc agctcggtgg gatcgcactc gccgcgggcg
     5221 gtggcccggc gcacggtcaa cgcgagcgcg gcgggcaaca cggtggccag tgtcgcgtcg
     5281 gagacgttct tgtacagtgc ggcgagcgcg ttgcgttcca gcaggtaggt ctcccgggcc
     5341 gggtcggcgc cgtgcagcga ggcatggtgg cggtggtagg cgatcgaccg cggctcgtag
     5401 cgcacccggt agccgcgtag gttgagccgc cagccgagat cgacgtcctc gcagaacatg
     5461 aagaaccgct cgtcgaaccc gccgagttgc tcgaagaccg cacggcggac gaacatcg
//
LOCUS       DASVXZ010000517         5468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_503072, whole genome shotgun sequence.
ACCESSION   DASVXZ010000517 DASVXZ010000000
VERSION     DASVXZ010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5468
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503072"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..990
                     /locus_tag="VF788_10750"
     CDS             <1..990
                     /locus_tag="VF788_10750"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEX8934648.1"
                     /translation="VRCMFVVVGEAIVDLVGQRGGRTFVAHPGGSPTNVALGLARLGV
                     PVTLMTRLGHDELGKMIFEYLRASGVLVNGGLAQGTSTSLAIATLAAGVASYDFRIEW
                     DMSALAPLPIETRCMHTGSLATALPPGNANVVDLVERERTRGRVTISYDPNVRPALLG
                     DAARARAGIERLVAVSDVVKVSDEDLRWLYPDRSDELVVQDWLGLGPALVVVTRGAVG
                     VYAVSAGLELHRPAVPIDLVDTVGAGDSFTSGLLEALHRADLLGGSRRAALAAIDEST
                     LASVVKAAALTAAITCSRPGADPPTRAEIDALLAARDCSSDVMGDGRGHLPTI"
     gene            1078..2418
                     /gene="fucP"
                     /locus_tag="VF788_10755"
     CDS             1078..2418
                     /gene="fucP"
                     /locus_tag="VF788_10755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015535 - fucose:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015756 - fucose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEX8934649.1"
                     /translation="MGASRVTAEPDRTNHPLVYRNMIVLFAVVICCFTAWGIAADMTA
                     PMVAAFKRIFTMSTFQASLVQFAYYGAYFALALPAAFINQRFGYKTGLLTGLGLASLG
                     ALFFYPASLIMTYSVFLVALFALAAGLSILETSANPFVISMGPEANSTRRLNLAQAFN
                     PVGTNIGVFLATVLVLPKLNSPIDRAAVTPEQLRTIQAEELKAVMVPYIGLAILLLVI
                     WIAIAVQKAPTIREEFPPASPSVGTRGEIIGRLWGNRRYRFGVIAQFFNIAAQVCTWT
                     FTIQYVEQALNGSLELGGYVLQISLLIFLASRFLMTWLMGYFRATALMAILAGLAVLL
                     CIYAIFSPNLGGVIAVAALSFCLSLMFPTIYGVALRGLGPATKFGAAGLVMAIVGGAL
                     VPLVQGKVIDVTSPAFSFIVPAACYAVVMAYALYDLRTTQPFEHGAPEAVPAHT"
     gene            2456..3748
                     /locus_tag="VF788_10760"
     CDS             2456..3748
                     /locus_tag="VF788_10760"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8934650.1"
                     /translation="MTRNRRSGLAALAAGLALLLACCGGPASTAPSGPTRNLEVLSWW
                     TSGSERAALDVLFDGFRAAQPGVDVHNVAVAGGGGSNAHVVLANHLLGGDPPDVWQTH
                     PGASIKQYIDAGQIADVSSIYQRDNLSPVIRQDVRQAVSKDGKEYGVSTGAHRINMLW
                     FNKRLLDKATVTVPAGGYTADALLTDLAKLKAAGVVPLCLGAKDPFARAELFENTLLG
                     VIGAEGWASLTSDQLNWNGPQVRQALDRFGTMLDYADPEAGALTWDQATRKLAAGECA
                     FESMNDSAYGELVVDGAKEGTDFDYVPYPGTESLFLTVVDTFVMAKNAKDPQNAQAFL
                     ATIGTAPTQLAFNKQKGSTPLRTDVDVSSLSLYQQSAAKAFAQDPVLLSITHGEAKSP
                     QFQQGFYDAIAAFAQSKDINVFNQALLDAVNQVPSPPH"
     gene            complement(3696..4391)
                     /locus_tag="VF788_10765"
     CDS             complement(3696..4391)
                     /locus_tag="VF788_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX8934651.1"
                     /translation="MISVKNLKIPVAGITLEADVEVPESARGVVLFAHGSGSGRRSPR
                     NRYVAGELHTAGLATVLVDLLTAEEERVDALTREFRFDIGLLSVRLAALTDWLARDER
                     TAELSVGLFGASTGAAAALVTAAMRPHSVQAVVSRGGRPDLTGEFLRLVYAPTLLIVG
                     ERDSTVIELNRKAMSKLGAEVQMVTVPGAMHLFEEPGALERVASLARDWFARHLLSAE
                     VTAPGSRRRVEPG"
     gene            complement(4434..4961)
                     /locus_tag="VF788_10770"
     CDS             complement(4434..4961)
                     /locus_tag="VF788_10770"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HEX8934652.1"
                     /translation="MSRQRDEQAKIVVCAHNSHLGDARATESTARGELNVGQLVRERH
                     PGDCHAIGFTSYTGTVTAADDWGGPAQRKWVRPALPDSVEELGHEVGEISSSSRSPPR
                     QGAADALRVARLERAIGVIYRLETEWQSRYFRARVADHMDAVIHVDDTRALEPLERTA
                     RWEEGEPAETYPFAV"
     gene            complement(4958..5041)
                     /locus_tag="VF788_10775"
     CDS             complement(4958..5041)
                     /locus_tag="VF788_10775"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934653.1"
                     /translation="MFSGRAISWNLRDQHTVDTLDARSAAT"
     gene            complement(5106..5399)
                     /locus_tag="VF788_10780"
                     /pseudo
     CDS             complement(5106..5399)
                     /locus_tag="VF788_10780"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
BASE COUNT          899 a         1835 c         1740 g          994 t
ORIGIN      
        1 gtgaggtgca tgtttgttgt cgtcggggag gcgattgtcg acctggtcgg ccagcgcgga
       61 ggtcggacgt tcgtcgctca tccaggcggt agcccgacta acgtcgcgct cggtctggcg
      121 aggctgggtg ttccggtgac gctcatgacg cgcctcgggc atgatgagct cggtaagatg
      181 atctttgagt atctgcgggc cagtggcgtc cttgttaacg gaggtctcgc ccagggcacc
      241 tcgaccagcc tggccattgc gacgctagcc gcgggcgtcg cgtcgtacga cttccggatc
      301 gaatgggaca tgtcggccct cgcgcccctg ccgatcgaga cccgctgcat gcacaccggt
      361 tcgctggcga cggccctccc gcccggcaac gcgaacgtcg tggacctggt cgagcgggag
      421 cgcacgaggg gacgggtgac gatctcctac gaccccaatg tacggccggc gctgctgggc
      481 gacgcggcgc gggcgcgggc gggcatcgag cgtctggttg ccgtttccga cgttgtcaag
      541 gtcagcgacg aagaccttcg gtggctctat cccgaccgat ccgatgaact cgtggtccag
      601 gactggctgg ggttagggcc ggctcttgtg gtggtgactc gcggtgcggt gggggtctac
      661 gccgtctccg ccggccttga gttgcaccga ccggccgtgc cgattgacct ggtggacacg
      721 gttggcgcgg gtgattcctt cacctccggg cttcttgagg cactgcaccg agccgacctt
      781 ctcggcggtt cgcgccgcgc ggcgttagcg gcgatcgatg agtcgaccct ggccagcgtc
      841 gtgaaggcgg cggccctgac cgcggcgatc acatgttccc ggccgggtgc cgatccgccg
      901 acacgagccg agatcgacgc tctgctcgcg gcccgggact gctccagcga cgtgatgggc
      961 gatggacgtg gtcacttgcc gaccatatga ggtccaccac tgacgtccgc ctcgggacgt
     1021 gaccctggca cgtcgggcgg cgaagggaga gctgcaatga gcacaaccga gcagccggtg
     1081 ggcgcgagcc gggtgaccgc tgagccggat cgaaccaacc atccgttggt ctacaggaac
     1141 atgatcgtgc tgtttgctgt cgtgatctgc tgcttcaccg cgtggggaat cgccgcggac
     1201 atgaccgctc ccatggtggc ggccttcaaa cggatcttca cgatgagcac gttccaggct
     1261 tcgctagtgc agtttgctta ctacggggcc tacttcgcgc tcgctcttcc ggcggcgttc
     1321 atcaaccagc ggttcggcta caagacgggg ctgctgaccg gactcggcct ggcgtcgctg
     1381 ggggccctct tcttctaccc ggccagcctg atcatgacct actccgtgtt cctggtggcc
     1441 ctgtttgcgc tcgccgccgg gttgtcgatt ctggagacgt cggcgaatcc tttcgtcatc
     1501 tcgatgggcc cggaagccaa cagcacccgg cggctgaacc tggcgcaggc gttcaacccg
     1561 gtcggcacca atatcggggt cttcctcgcc accgtcctcg tcctgcccaa gctcaattcg
     1621 ccaatcgacc gtgccgcggt gacgcccgag cagttgcgca ccatccaggc cgaggagctg
     1681 aaggcggtca tggtccccta tatcgggctg gccatcttgc tgttggtgat ctggatcgcc
     1741 atcgcggtcc aaaaggctcc gacgatccgg gaggaatttc cgccggcaag ccccagcgta
     1801 ggtacgcggg gtgagatcat tgggcggctc tggggaaacc gacgctatcg gttcggcgtc
     1861 atcgcgcagt tcttcaacat cgccgcccag gtgtgcacct ggacgttcac gatccagtat
     1921 gtcgagcagg ccctcaacgg gagcctggag ctgggcggat acgtactgca gatcagcctg
     1981 ctcatttttc tcgcctcccg gttcctgatg acctggttga tggggtattt ccgggccacc
     2041 gcgctcatgg cgatactggc cggcctggca gtgctgctgt gcatctatgc catcttcagc
     2101 ccgaacctcg gtggcgtcat cgcggtggcc gcactgtcgt tttgcctgtc gctgatgttc
     2161 cccaccatct acggcgtcgc gttgcggggg ctggggccag caaccaagtt cggcgcggcc
     2221 ggtctggtca tggcaatcgt cggcggcgcg ctggtgcccc tggttcaggg gaaggtcatc
     2281 gacgtgacga gcccggcatt ttccttcatc gtgccggccg cctgctacgc ggtggtgatg
     2341 gcctacgcgc tttacgacct caggacgaca caaccgttcg agcacggcgc gccggaggcg
     2401 gtacctgccc atacctgact catcgccatt cccgccgtcc caaggagaat cgaccgtgac
     2461 tcgcaatcgc cgctcgggcc tggcggctct ggctgccggc ctcgcgctcc tgctcgcctg
     2521 ctgcggcggg ccagcctcaa cggctcccag cggccccacc cggaacctcg aggttctgtc
     2581 ctggtggacg tctgggtcag agcgtgccgc gctcgacgta ctcttcgacg gcttccgagc
     2641 agcccagccg ggcgtggacg tccacaacgt ggcggtggcc ggcggcggag gcagcaatgc
     2701 acacgtcgtt ctggcgaatc acctgctcgg tggtgatcca ccggatgtgt ggcagaccca
     2761 ccccggcgcc tccatcaagc aatacatcga cgcggggcag atcgccgacg tgagctccat
     2821 ctaccaacgc gacaacctgt ccccggtcat tcgccaagac gtgcgccaag ccgtctccaa
     2881 ggacgggaag gagtacggcg tctccaccgg agcgcaccgg atcaacatgc tgtggttcaa
     2941 caagaggctg ctggacaagg caacggtcac ggtgccggcc ggtggctaca cagccgatgc
     3001 gctcctcacc gacctggcca agctgaaggc ggccggggtg gttccgctgt gcctgggcgc
     3061 gaaggacccc tttgcccgcg ccgagctgtt cgagaacacg ctgctgggtg tcatcggtgc
     3121 cgagggatgg gcaagcctga catccgacca gctgaactgg aacggaccgc aggtccgcca
     3181 ggctctggac cggttcggca ccatgctgga ctatgccgac ccggaagccg gcgcgttgac
     3241 gtgggaccag gcgaccagga aactcgccgc cggcgaatgt gccttcgaga gcatgaacga
     3301 ctcggcgtac ggcgaactcg tcgtggacgg cgccaaggaa ggtaccgact tcgattacgt
     3361 gccctacccc ggcaccgaga gcctcttcct caccgtcgtc gacaccttcg tcatggcgaa
     3421 gaacgccaag gacccgcaga acgcccaagc attcctggcc acgatcggaa ccgctcccac
     3481 ccagctggcg ttcaacaagc agaagggttc cacgccatta cgaaccgacg tggacgtgtc
     3541 atcgttgtcg ctctatcagc agtccgcggc gaaagccttt gcacaagacc ctgtcctgct
     3601 gtcgatcacg cacggtgaag caaaaagccc acagttccag caaggcttct acgacgcaat
     3661 cgcggcgttc gcccagagca aggacatcaa cgtctttaac caggctctac tcgacgccgt
     3721 gaaccaggtg ccgtcacctc cgcactgagc aggtgccgcg cgaaccagtc cctggccaga
     3781 ctggccaccc gttccagcgc gcctggttcc tcgaacagat gcatcgcgcc gggaactgtc
     3841 accatttgta cctcggcacc gagtttggac attgccttcc ggttgagctc gatgacggtg
     3901 gagtcgcgct ctccgacaat gagtagcgtc ggcgcgtaca ccaggcgcag gaactcgccg
     3961 gtgagatcgg gtcgcccgcc tcgggaaacg acggcttgca cggagtgagg acgcatcgca
     4021 gcggtgacaa gcgccgcagc cgcgcccgta ctggctccga agagcccaac gctgagctca
     4081 gccgtgcgct cgtcacgggc cagccagtcg gtcaacgcgg ccaaccgcac ggaaagcaga
     4141 ccaatatcga accggaactc ccgagtgagt gcatcgacgc gttcctcctc cgcggtgagc
     4201 aggtcgacga gaaccgtggc cagcccggca gtatgcagtt cgccagccac gtaacgattc
     4261 cgtggactgc gccgcccgct cccgctgccg tgggcgaata gcacgactcc ccgcgcggac
     4321 tcggggacct cgacgtcggc ttccaaggtg atcccggcaa ccggaatctt gaggtttttc
     4381 acggagatca tttggacttc ctttcgctcg gagccgggat ctacatcact gactcacacg
     4441 gcgaacggat acgtttccgc aggctcgccc tcctcccagc gggctgtccg ttcgagtggt
     4501 tcgagggcgc gcgtgtcgtc gacgtggatc acggcgtcca tgtgatccgc cacgcgcgcc
     4561 cggaagtagc ggctctgcca ctcggtctct agccggtaga tcacgccgat cgcgcgctcc
     4621 aggcgcgcca cccgcagggc gtcggcggcc ccttggcgcg gcggagaacg agaggaagaa
     4681 cttatttcac ccacctcgtg gccgagctct tcgacgctgt cgggtagcgc cggccgcacc
     4741 cacttgcgct gtgccggccc accccaatcg tccgcggcgg tcaccgttcc ggtgtaacta
     4801 gtgaagccga tcgcgtggca gtcaccggga tgccgttccc ggaccagttg gcccacgttc
     4861 agctctcccc gagccgtgga ctcggtcgcc ctagcatcgc ccaggtggga attgtgcgca
     4921 cagaccacga tcttcgcctg ctcatcccgc tgtcggctca agtggccgct gagcgcgcgt
     4981 cgagggtgtc gaccgtgtgc tgatcgcgca ggttccacga gatagcccgc ccactgaaca
     5041 tcgaccggta gtactccgcc gcgtccttga cagtcttcac gttctgctcg gcaatcgagc
     5101 accacggtgt tacgccacgt ccaggtggaa aagcgttcga atccgcgtag tgcctcctcc
     5161 gcggtcgtgt cggcgctacg tccccggacg aaccggttca cccggtatgc gtccggccag
     5221 tcgccctcca ccgcaacggc gcagaaatgc ttctcttcga tcaggcgctg cgtcatgctc
     5281 gcgcgtgccg cgtagaactc atgcgtgctg tgcgaggctt ccccgatcag cacgaagtgc
     5341 gcatcgccaa ccaggtccag cagagcatcc cccagtggca caccgttctc ggtcggcatc
     5401 gctgccgacc ggatgagggc cacctcagtc cggcccgatg cgcctgccgt gaccggccgt
     5461 gactgcgc
//
LOCUS       DASVXZ010000518         3140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1757419, whole genome shotgun sequence.
ACCESSION   DASVXZ010000518 DASVXZ010000000
VERSION     DASVXZ010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1757419"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..1007
                     /gene="adh"
                     /locus_tag="VF788_10785"
                     /pseudo
     CDS             1..1007
                     /gene="adh"
                     /locus_tag="VF788_10785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020419378.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            1077..1457
                     /locus_tag="VF788_10790"
     CDS             1077..1457
                     /locus_tag="VF788_10790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF779 domain-containing protein"
                     /protein_id="HEX8934654.1"
                     /translation="MVPAQRVGLSPAAEDMLRKLAEQHGPLMFHQSGGCCDGSSPMCY
                     PAGEFRTGGSDVRLGELSVEGIEQPVEVWMSRSQFEYWRHTHLTIDLVKGRGSGFSLE
                     APEGVRFLIRSRLLTTEELAELDV"
     gene            1629..2867
                     /locus_tag="VF788_10795"
     CDS             1629..2867
                     /locus_tag="VF788_10795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934655.1"
                     /translation="MTEHTGCVVVGGGPAGMVAGLLLARAGVEVTVLEKHPDFLRDFR
                     GDTVHPSTLTLLDELGLGEKFDAVPHSELTAAGFPTDDGGMMKLADMTRLRVPHPYIA
                     MVPQWDFLDLLADSAAKEKTFTLRMESEMTGLIREGGRVVGICYKTAEGTKGELRANL
                     VIAADGRWSLGRREAGLKPKEYDCPFDVWWFRLSRHDDEGEGMLTPQMRNRRFAVPLP
                     RPGYFQVAYLAPKGADLRKDGIEAFRANVTEICPEFADRVHELKTMDDVKFLDVRLNL
                     LREWHIDGMLCIGDAAHAMSPVGGVGINLAVQDAVAAARLLAEPLRRGRPTPDDLAKI
                     RSRRLLPTMLVQGLQRILHRAVMRPVMAGKRNGPPAAMIKLFARFPQLSYVPARLLGL
                     GFRPEHAPAFARRAMETVER"
BASE COUNT          555 a         1056 c         1029 g          500 t
ORIGIN      
        1 acctggaagc tggcacccgc actcgcagcc ggcaacgcgg tggtactcaa gcccgcggaa
       61 cagaccccgg catcgattca cgtactgctg tcgtttatcg gtgacctgat cccgcccggc
      121 gtgctcaatg tggtgaacgg attcggggtg gaggcaggca aaccgctggc ctccagcccc
      181 cgagtcggca agatcgcgtt caccggcgag accaccaccg gccggttgat catgcagtac
      241 gcagcgagaa cctgcatccg gtcaccctgg agctgggcgg aaagagcccg aacgtcttct
      301 tcgaggacgt cgccgccgcg ccggacgact tctacgacaa gtcgctggaa gggttcacca
      361 tgttcgccct gaaccagggt gaggtgtgca cctgcccgtc ccgggcgctg atccaggcca
      421 gtatctatga cagtttcctc ggcgacaccg tcaagcgcac cgagcagatc gtgcagggcc
      481 acccgctgga caccgacacc atgctcggcg cacgggcgtc caatgaccag tacgagaaga
      541 ttctgtccta cctggacatc ggccggcagg agggcgccaa ggtgcttacc ggcggcgaac
      601 ccgccgagct cggtggtggg ctctccggcg gctactacat caagccgacg attttcgagg
      661 gcagcaaccg gatgcgggtc ttccaggagg agatcttcgg accggtcgtc tcggtgactc
      721 gcttcgacga ctacgacgac gcggtcaaga tcgccaatga caccctttac gggctgggcg
      781 ctggggtgtg gtcgcgcgac ggggtccaag cctaccgcgc cggccgcgat atccaggccg
      841 gccgggtatg gacgaactgc taccacgctt accccgcaca cgcggccttc ggtgggtaca
      901 agcagtccgg gatcggccgg gaaaaccaca agatgatgct ggagcactac cagcagacca
      961 agaacctgct ggtgagctac tccaccacgc cgcaaggttt cttctgatcc acgatggtgt
     1021 cctggtggtg gccgcgtcgt gctgatcggc caccaccagc ggcacgggag gaggccatgg
     1081 tgccagctca acgggttggc ctgagccccg cggcagagga catgctgcgg aagctggccg
     1141 agcagcacgg accgctgatg tttcaccagt cgggcggctg ctgcgatggc agctcgccga
     1201 tgtgctatcc cgccggggag ttccgcaccg gtggttccga tgtccggctc ggtgagctgt
     1261 ccgtcgaggg catcgaacag ccggtcgaag tgtggatgtc cagatcacag tttgaatact
     1321 ggcggcacac ccatctcacc atcgacctgg tcaagggcag gggcagcggc ttctcactcg
     1381 aagcgcctga gggagtccgc ttcctcatcc gctcccggct gctgaccact gaggaactgg
     1441 ccgaactgga cgtctagtgg actgatctcc acattccccg cgccaccagc ggggtactga
     1501 tcgcccaccg gcccgcagat gtctcagtcg tagcctgatc agcgtatcca tcaccacggt
     1561 gcttgacgcg ccggtgaccc aggtgcatcc tcattctatt caacgagtga tgaaaaggga
     1621 tgatggagat gaccgagcac acgggctgcg tggtcgtcgg tggcggtccg gccggcatgg
     1681 tggcagggct gctgctggcc agggctgggg tcgaagtgac agtgctggag aagcatcccg
     1741 acttcctccg agatttccgc ggtgacacgg tgcacccctc gacgctgacc ctgctcgacg
     1801 aactgggcct gggcgagaag ttcgacgccg tgccgcatag cgagctcacc gcggccgggt
     1861 tccccaccga cgacggcggc atgatgaagc tggccgacat gacccggctg agggtgccgc
     1921 acccgtacat cgcgatggtg ccgcagtggg atttcctcga cctgctcgcc gacagcgccg
     1981 ccaaagaaaa gacgttcacg ctgcggatgg agagcgagat gaccggcctg atccgcgaag
     2041 gcggccgggt cgtggggatc tgctacaaga ccgccgaggg gaccaagggc gagctccgcg
     2101 cgaacctggt catcgccgcc gacggccgct ggtcgctggg ccggcgcgag gcaggcctga
     2161 aacccaaaga gtacgactgc ccgttcgacg tctggtggtt ccgcctgtcg cgccacgacg
     2221 acgaaggcga aggcatgctc accccgcaaa tgcgcaaccg ccggttcgcc gtgccgctgc
     2281 cgcgccccgg ctacttccag gtcgcctacc tcgcgccgaa gggcgccgac ctccgcaagg
     2341 acggcatcga agcgttccgc gccaacgtga ccgaaatctg tcccgagttc gccgaccggg
     2401 tgcacgagct caagacgatg gacgacgtca agttcctcga tgtgcggctg aacctgctgc
     2461 gcgagtggca catcgacggg atgctctgca tcggcgacgc ggcgcacgcc atgtcgccgg
     2521 tcggcggggt gggcatcaac ctggccgtgc aggacgccgt cgccgcggca aggctgttgg
     2581 cggagccgct tcgccgtggc cggccgaccc cggacgacct ggcgaagatc cggtcacgcc
     2641 gcctgctgcc cacgatgctg gtgcagggcc tgcagcggat cctgcaccgg gccgtgatgc
     2701 gcccggtgat ggcgggcaag cgtaacggcc cgcccgcggc aatgatcaag ctgttcgcac
     2761 ggttccccca gctgtcgtac gttccagccc ggctgctcgg cctcggcttc cggcccgagc
     2821 acgccccagc gttcgcacgc cgcgcgatgg agaccgtcga gcgctgagca gccagcacgt
     2881 ggccggtggc ccaccgagcg tccacgcccc gaccgagacg tcgatgggcc accggccacc
     2941 cacaaccatc ccctggatcg gcgtttccca catgtccagg gaccgccatt tccgggaggg
     3001 tgcaccgtcg ttgcctgacc gcatcatccc accaacgtgg tcggtctcca gagcgactcg
     3061 ccgccaccca acaggtatgt gatggcgaac ctggacgcgg gcgtcggctg tacgggacag
     3121 ccacccgact cccctggttc
//
LOCUS       DASVXZ010000519         2133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_324214, whole genome shotgun sequence.
ACCESSION   DASVXZ010000519 DASVXZ010000000
VERSION     DASVXZ010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324214"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VF788_10800"
     CDS             complement(<1..243)
                     /locus_tag="VF788_10800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934656.1"
                     /translation="MATGVQAMVELAIPGAGEAVADDVAGGGLDRRGAGVGGKRRGGA
                     EPVDGADQGEDLAGEQVPDAVQLGQGGTTGLNRCGDL"
     gene            708..1964
                     /locus_tag="VF788_10805"
     CDS             708..1964
                     /locus_tag="VF788_10805"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8934657.1"
                     /translation="MEIVYERVAAIDVGKKVIAVAVRVPGERAGKRHQQVRKFNTYYR
                     TLVKMVAWLVAEGVTHVTMEATGVYWRPVFHALCEAARPLEVLLVNARHVRNVPGRKS
                     DALDAAWLAELTECGLLRGSFIPPPEIAAIRELTRYRKRLIEARTSELQRLAKVLEDS
                     GVKIDSVASTLTTLSARDMIEALITGERDPVVLANLARGRMRSKIPDLTMACAGRFGA
                     QHALMCTLHLEHIDHLADMIARLEARIDEASLPFARQVELLATIPGIGQRAAQVIISE
                     IGVDMTRFPTAAHLASWAGLCPGNNESAGKHRSGRTRKGSKELCQVLVECAWAAGRTS
                     TYAGAQFRRFHRRFGKQGGRKAAIATAHTLIVIIWHVLAETTAYRDLGSDYFTRRIDN
                     PEARKRRLVRELEALGHKVTIEPAAA"
BASE COUNT          386 a          720 c          668 g          359 t
ORIGIN      
        1 aagatcacca cagcggttca gtccagtggt accaccctga cccagctgca cggcatcggg
       61 aacctgctcg ccggcaagat cctcgccctg gtcggctcca tcgaccggtt ccgctccgcc
      121 gcggcgtttg cctcctacac cggcaccgcg ccgatcgagg cctcctccgg cgacgtcatc
      181 cgccaccgcc tctcccgcgc cgggaatcgc caactcaacc attgcctgca cacccgtggc
      241 catcacccaa ctcagccaca acacccgcgg ccgggcctac taccagggca aacgcgccgc
      301 cggcaaaagc catcaacaac gccctgcgct gtctcaaacg gcgcctgtcc gacgccgtct
      361 accgccgcct cctccgcgac gcacaccccg agaccgcgac gggcccggga ggacacccgg
      421 gagcgactag gaaatccagc gcggccggct caacccctac caccgactct ttggacaaga
      481 ttttgatgcc tctagcgcgg cgctcgcggg tcgatgaaac tgggggcgcg tcgcccgctg
      541 acgtcgtagt gacttggcgc gggttgagcc cgtggacaag attgacgctg gagtccgccc
      601 cggttgggca ctccgggttg ccgcctttca gcgcgagtct cagactcttg atttcccgcg
      661 ggctctgcgg tcggcgcgcc tagtggccgt tgggaaggga gtccacggtg gagatcgtct
      721 atgagcgggt cgccgcgatt gatgtcggta agaaggtcat cgcggtggcg gtacgcgtcc
      781 cgggcgagcg cgcgggcaag cgtcaccagc aggtgcgcaa gttcaacacc tactaccgaa
      841 cgctggtcaa gatggtggcc tggctggttg ccgagggcgt cacgcacgtg acgatggagg
      901 cgactggggt gtattggcga ccggtgttcc atgctctatg tgaggccgcg cggccgttgg
      961 aggtgttgtt ggtcaacgct cgccatgtcc gcaacgtccc gggtcgcaag agcgacgcgc
     1021 ttgatgctgc gtggctggcg gagttgaccg agtgcgggct gctgcggggc agtttcatcc
     1081 cgccgcctga aattgcggcg attcgggagt tgactcgtta ccgcaagagg ctgatcgagg
     1141 cgcgcaccag cgagttgcag cggctggcca aggtcctcga ggatagcggg gtcaagattg
     1201 actcggtggc ctcgacgttg accaccctgt ctgcgcggga catgatcgag gcgctcatca
     1261 ctggggaacg cgatccggtt gtgttggcca accttgctcg cgggaggatg cgcagcaaaa
     1321 ttcccgactt gaccatggcg tgcgcgggtc ggttcggggc gcagcacgcc ttgatgtgca
     1381 cgctgcactt ggaacacatc gaccaccttg ctgacatgat cgctcggctg gaggctcgca
     1441 tcgacgaggc cagccttccc ttcgcccgcc aggtcgagct tctggcgacg attccgggga
     1501 tcggacagcg cgccgcgcag gtcatcatct ccgagatcgg cgtcgacatg accaggtttc
     1561 ccaccgcggc gcatctggct tcctgggctg ggctgtgccc cggcaacaac gaatccgccg
     1621 gcaaacaccg ctcaggaaga acccgcaaag gcagcaagga gctgtgccaa gttctcgtcg
     1681 aatgcgcctg ggcggcagga cgcaccagca cctacgcggg cgcacagttc cgccggttcc
     1741 accgccgctt cggcaagcaa ggaggccgaa aggcggctat cgccaccgcg cacaccttga
     1801 tcgtgatcat ttggcatgtg ctcgccgaga ccacggccta ccgcgacctt ggctcggact
     1861 acttcacccg ccgcatcgac aaccccgaag cacgcaaacg ccggctcgtg cgcgaactcg
     1921 aagcccttgg acacaaggtc accatcgaac ccgcggccgc atagccagtc accaatattg
     1981 atcaccaacc aacccggtct gagtaccggg tcgccgaccc ctgcgtccag aacgtgcctg
     2041 gtcaccgtag ttacatctca gaacacgtca cacaaatact gacagatctg cacgcggtga
     2101 acgggtagcg gtatcccagc ggtgcgctgg gcg
//
LOCUS       DASVXZ010000520         3187 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1579287, whole genome shotgun sequence.
ACCESSION   DASVXZ010000520 DASVXZ010000000
VERSION     DASVXZ010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1579287"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1425
                     /locus_tag="VF788_10810"
     CDS             <1..1425
                     /locus_tag="VF788_10810"
                     /inference="COORDINATES: protein motif:HMM:NF012570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEX8934658.1"
                     /translation="ISDARAQLHADSRISPDVDAELATCQRRLDEPLRVALAGTLKSG
                     KSTLLNALVGEEIAPTDATECTRVVTWFSRSAGPRIDLTHDGGQHTSLPVRRTDGQLT
                     LDLGPVAAERVERLDVGWPSSLLDQYTLVDTPGTSSNSRDVSARTHAFLTPEEGTCEA
                     DAIVYLMRSLHNADVTLLRRLHEYAGTGRGALGIIGVLSRADETGAGRATSLDPARGV
                     SAQLRTAHELDGLHRDFLAVSGLLALRGRTLRQREFITLDQLAALPHDLLETALVSPG
                     RLVTTDLPIPAPDREHLLTSFGMVGTRIAISLIHSGARDAPALAAELVHHSGLDELQR
                     ILTTRFGSRNRQLKAHSALRTLRGILLRHRSPYTVRLFRAVDRVLADNHAFTELRVLA
                     GLAALPVPEATRNALDHVLGGRGTSPATRLGLPSDATPTHTRAAAFHAIRYWRDQLDE
                     PLLDQPTTQTYRAAIRSCEAIIAQ"
     gene            complement(1475..2821)
                     /locus_tag="VF788_10815"
     CDS             complement(1475..2821)
                     /locus_tag="VF788_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934659.1"
                     /translation="MARQPPELAEQQRLLGRHLAVLREAAGLYQTDIARAVPCHRTTV
                     THAEAGSQLPDADFWETADSVVGANGVLIAQYGALIQARETHKAHQRAARRARAHTEL
                     AKLASNDERAISSTPSNGLQLATWQGTSLSGGGEHDALELARRVAASDMSAETLSRLE
                     GMVDELAIKYPRTPPRELLGSIRRHVAYVMRLLGARKTLDEHRRLLIVGGWLSLIAAT
                     LYIDLENRPAANSWLATAASLAKQAAQSEIYAWRYETEAWQALNDGDYHRAVELSQAA
                     QRLAPRGSSAAIQATAQEGRAWARLGKARETYDALKRVEGYVSRMTRPDTPEHHYRYD
                     PDKAEAYVATTLAWLGDVASEHHARHVVATLTHEADAGRWPRRLASANIDLALALLLT
                     DRLDEACAVAQASMLSGRLVASNHWRALEVVRTIEARGLPESADLREAYQLMRRGE"
BASE COUNT          577 a         1091 c          942 g          577 t
ORIGIN      
        1 atcagcgacg cccgtgccca gctccacgcc gactcccgga tcagccctga tgtcgatgcc
       61 gagctagcga cctgccagcg ccggctggac gagccgctgc gagtggcact ggccggaact
      121 ctgaagtccg gtaaatcgac cctgctcaac gccctggtcg gggaggagat cgcgccgacc
      181 gacgctaccg agtgcacccg cgtggtcacc tggttctctc gttcggctgg gccccgcatc
      241 gacctcaccc acgacggagg gcagcacacc tcgctgccgg tgcggcggac cgacggccag
      301 ctcacgctcg atctcggacc ggtggcagcc gagcgggtgg agcgactcga tgtcggttgg
      361 ccctcatcgc tactcgatca gtacacgctg gtcgacactc cagggacatc gtcgaactcc
      421 cgcgacgtct ccgcgcgcac ccacgccttt ctcactcccg aggagggaac ctgcgaggcc
      481 gacgcgatcg tctacctgat gcgctccctg cacaacgccg atgtgacgct gctgcgcagg
      541 ctccacgagt acgccggtac cggacgtggc gcgctcggca tcatcggggt cctgtctcgc
      601 gccgacgaaa ccggcgcagg gcgagccacg tcactcgacc ccgcccgagg ggtgagtgcg
      661 caactgcgca ccgcccacga acttgacggt ctgcaccggg atttcctcgc ggtgtcgggg
      721 ttactcgcgc tacgaggcag aacgctacga caacgcgaat tcatcacgct ggaccaactc
      781 gccgcactgc ctcacgacct cctcgaaaca gccctcgttt ctcctggtcg cttagtcacg
      841 accgacctac cgatcccggc gcccgaccgg gagcatctct tgacgtcctt cggcatggtc
      901 ggcacccgga tcgccatatc gctgatccac tccggtgccc gcgacgcacc cgcgctcgct
      961 gcggaactgg tacaccacag tggactggac gaactacagc ggatcctcac tactcgcttc
     1021 ggcagccgca accgccaact gaaagctcat tcagcgctgc ggaccctgcg gggaatcctg
     1081 ctgcggcacc gcagccccta tacggtgcgg ttgttcagag cggtcgaccg agtcctcgcc
     1141 gacaaccacg ccttcaccga gctgcgggtt ctggccggac tcgccgccct gccggtgccg
     1201 gaggcgaccc gcaacgctct cgatcatgta ctcggcggcc gcggcacctc accagcaacc
     1261 cgactcggcc tgccatccga tgccaccccg acccacaccc gtgcagccgc gttccacgcc
     1321 atccggtact ggcgcgatca gctagacgaa ccgctcctgg accaacccac gacccagacc
     1381 taccgagcag caatccgcag ctgcgaagcg atcatcgcgc aatgactgcc ccagctccaa
     1441 caacccagca gtcgacaaca accactgcct cggattactc cccccgtctc atcagctggt
     1501 acgcctcccg cagatctgcc gattccggta gacctcgggc ttcgatagtc cggactacct
     1561 caagcgctcg ccagtgattc gaggccacca gacggccgga gagcatggac gcctgggcga
     1621 cagcgcaggc ttcgtcgaga cggtcagtca ataacagagc aagagcaagg tcgatgttgg
     1681 cggaggcaag ccggcgtggc cagcgaccag cgtcggcttc atgggtcagc gtggccacaa
     1741 catgacgcgc atggtgctca gatgccacat caccgagcca cgcgagcgtg gtggcgacat
     1801 aggcttccgc cttgtccggg tcgtagcggt agtggtgctc gggtgtgtcc ggcctcgtca
     1861 tgcgggagac gtatccctcg acccgcttca gtgcgtcata tgtctccctg gctttaccga
     1921 gtcgtgccca cgcacgaccc tcctgcgccg tagcctgaat agctgccgaa ctgccgcgtg
     1981 gagctagtcg ttgcgcagct tgggataact ctacagcccg gtggtagtca ccatcattta
     2041 acgcttgcca cgcttcggtc tcatagcgcc aggcatagat ttcggactgg gccgcctgct
     2101 tcgctaagct cgcagcagtc gcgagccaac tgttggccgc tggtcggttc tcaagatcaa
     2161 tgtatagggt ggcagcaata agggaaagcc aaccgcccac gatgagcaac cgtcggtgtt
     2221 catcaagagt tttgcgtgca cctagtagcc gcatgacgta cgcaacatgt cggcggattg
     2281 aaccaagcaa ctcccgtggt ggagttctag ggtatttaat cgccagttcg tcaaccatgc
     2341 cttcgagtcg gctcagtgtc tcagcgctca tgtctgaagc agctacccgt cgggcaagtt
     2401 ctaaggcgtc gtgctcgcct ccgccactta gtgaggtgcc ttgccaggta gccaattgca
     2461 ggccgtttga tggtgttgat gaaatggcgc gttcatcatt cgacgccagc ttcgctagct
     2521 cagtgtgcgc ccgcgcccga cgagctgcgc gttgatgggc tttatgggtt tctcgggcct
     2581 ggatgagcgc accatactga gcgatgagca ctccattggc acccacgaca ctgtctgccg
     2641 tctcccagaa gtcagcatcc ggcagctgtg agcctgcctc ggcatgagtc accgttgtgc
     2701 ggtgacacgg cacagcacgg gcaatgtctg tttggtagag cccggctgcc tcgcggagca
     2761 ccgccaggtg tcggcccagc agccgttgct gctcagcaag ctccggtggc tgacgggcca
     2821 tgctgaagca cacctcctcg cttgtcccgc tggaaggttg gtcaagttcc gagcctaacg
     2881 ctggatcatg ttcgacctcg tcacctgcta ccccacatgg cggctcacgc cctgagctct
     2941 tccaaggctc cagggccggg ctgaacctga gctggtgcgc atccttcatt cggggcgctc
     3001 gcccactcca ccagtccggc gctctccggt cctgggtgtt catccgccga cgatagaaat
     3061 gggctgagaa cgtggcatac gaggacaacc ctgtggcgcg aggctctgag agtcgggttc
     3121 acaaacggga atgggtcgcg gccttcgggc gcgagcatgc agagcgtagc cgtcgaggtg
     3181 aaactcg
//
LOCUS       DASVXZ010000521         7582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1641230, whole genome shotgun sequence.
ACCESSION   DASVXZ010000521 DASVXZ010000000
VERSION     DASVXZ010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7582
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641230"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VF788_10820"
     CDS             <1..413
                     /locus_tag="VF788_10820"
                     /inference="COORDINATES: protein motif:HMM:NF023502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3558 family protein"
                     /protein_id="HEX8934660.1"
                     /translation="DPAKVDMCTILTEPELSRFGIQPGTRSPVDQPGSVGCEWAGTRF
                     TLSLERDKETVASYKARPRGPAFITFAENTVNGRAGLRFGVDPDGCEQLIDGGPVSLV
                     VNVASMLRPNVPHVDSCAEALRIAQLIEPRLPKP"
     gene            complement(582..1013)
                     /locus_tag="VF788_10825"
     CDS             complement(582..1013)
                     /locus_tag="VF788_10825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934661.1"
                     /translation="MRFEFRRGCPGEDGPLVGHRISGGRVDLVLIEGFSRNCFAWRQR
                     TTSLIIPGRGLVERQVEGSAIEIIWVDGGTGDGHGWQSAADDIERAEISTTRCAAVIW
                     IGCSIQPRAPSPSVRPQDLGQPPVKNNRTTSSLLNRWLAAG"
     gene            complement(1026..1175)
                     /locus_tag="VF788_10830"
     CDS             complement(1026..1175)
                     /locus_tag="VF788_10830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934662.1"
                     /translation="MRTLGAGGGVGLSSGSAVFDAADARPQGRPMVRSMRTDSPDLEI
                     AMRIA"
     gene            complement(1525..1782)
                     /locus_tag="VF788_10835"
     CDS             complement(1525..1782)
                     /locus_tag="VF788_10835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934663.1"
                     /translation="MFISLMAARLGEEHLALQAQDEAARTLPESLPRFRTHLEMHRGL
                     MLVRAGDHDGGTTYARAAFDALPVEKHSLTLRILMTEIEQH"
     gene            complement(1767..2558)
                     /locus_tag="VF788_10840"
                     /pseudo
     CDS             complement(1767..2558)
                     /locus_tag="VF788_10840"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            2813..3193
                     /locus_tag="VF788_10845"
     CDS             2813..3193
                     /locus_tag="VF788_10845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934664.1"
                     /translation="MSAAAAQYGDRVVDEAFVVELPIYRRSALIENSFSDLLIGGTQV
                     PVRLTAADAVLREQYIEAFIKPDAEGIVVANYSHCFCIADILVTIVVKCILRSDGNGA
                     DIVDAEGELPGYEQPVLFLVDGVA"
     gene            complement(3374..3694)
                     /locus_tag="VF788_10850"
     CDS             complement(3374..3694)
                     /locus_tag="VF788_10850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934665.1"
                     /translation="MDAYLAHNPWHRPGREPVLLDLGCGFPPVTALDSATTLPGWRVI
                     GDDPSFDRYFVYDGADYACFDVEGLLRFSQTDTMAADPVLTRWRTEGHAWCSIRSGIT
                     NATT"
     gene            3759..4148
                     /locus_tag="VF788_10855"
     CDS             3759..4148
                     /locus_tag="VF788_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020643633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934666.1"
                     /translation="MSLRRPTAVAGLVALLTSSGVMHFAAPAQFDAIVPGQLPGGARI
                     WTHLSGAAELVIGVLIAIPRTRRLGGLLAALLFVAVFPANVKMAIDWSTRPAWMRALA
                     YGRLPLQIPLVVWALLVYRRSAPTARS"
     gene            4547..5254
                     /locus_tag="VF788_10860"
     CDS             4547..5254
                     /locus_tag="VF788_10860"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEX8934667.1"
                     /translation="MTAAVAAGALAVAGHTMQTTTSTATEQVADIAPAALTGPSLEPE
                     VMQLNLARDAVTELPALRRAVERADRAAAAYQDAVRSRLGQPYQAGNNHSLDGWIAKA
                     LGLMGLPQALADGVKTIIMHESGGNPNAINNWDSNARAGIPSQGLMQTIPSTFKACVL
                     PSLAGRSITDPVANITAGIRSMIAHHGLGAVMNGGRRDANGNYIGYGGAGCSSYDLNA
                     FASQLRNLWKDEPLPGL"
     gene            5397..6122
                     /locus_tag="VF788_10865"
     CDS             5397..6122
                     /locus_tag="VF788_10865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L deacetylase family protein"
                     /protein_id="HEX8934668.1"
                     /translation="MAAPQVQPVQRVLMIAAHPDDLDFGSAGTIATWTGAGIEVSYCI
                     VTDGDAGGFDPGVPRSAIGAIRQDEQRKAAATLGVTDVEFLGYPDGRLTVSFELRRDI
                     ARVIRRTRPDRVVVPSPHRDLRNVYVSHPDHQAAGEAALCAIYPDARNPFAHPELAEE
                     GLDAHTVPEVWVLSANDRADHYVDITDTFDRKIVALRAHTSQTAHMTTLEERMRAWGS
                     MQAQAAGLAEGRLAEGYLVLDTR"
     gene            complement(6217..7017)
                     /locus_tag="VF788_10870"
     CDS             complement(6217..7017)
                     /locus_tag="VF788_10870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8934669.1"
                     /translation="MFDVQLAYERCGAGAPLVLLHGAGHRRQAWRPVQEQLARHREVI
                     SLDFPGFGESPPLPDHLSYELDTAVTVLKEFFADLGLDRPHVAGNSMGGLVSLVLAQQ
                     GMVSSATALSPAGLWSPMGRRVSLSMVRSVRCTARYMPPKLANRLSRTAAGRTLMCGI
                     LFGRPDLLEPSVLLEDMRAMIDAVGFRPSLAAGERIIFTGRVHDVPVTIAWGSRDLLF
                     RRPRAASITRLIPHARLLRLPGCGHVPMNDNPELVAHVLLTGSGGVRA"
     gene            7096..>7582
                     /locus_tag="VF788_10875"
     CDS             7096..>7582
                     /locus_tag="VF788_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020634384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8934670.1"
                     /translation="MGESLAELRVARRQASVPPIHYPPALPITQHVSEIAAAIRDHQV
                     VVVAGETGSGKTTQLPKICLELGRGTQGTIGHTQPRRLAARTVAERIAAELGVPVGDA
                     VGWKVRFTDQASDDTLVKLMTDGILLAEIQSDPSLAQYDTLIIDEAHERSLNIDFVLG
                     YL"
BASE COUNT         1333 a         2521 c         2437 g         1291 t
ORIGIN      
        1 ccgacccggc caaagtcgat atgtgcacca tcttgactga gcccgaactc agccgattcg
       61 gcattcagcc gggcacccgc agtccggtag accagcccgg ctcggtcggg tgcgagtggg
      121 caggtacgcg cttcacgttg agccttgagc gcgacaagga aaccgtcgcg tcctataaag
      181 cccgtcctcg tggaccggcc ttcattacct ttgcggagaa cacggtgaac ggccgggctg
      241 gactcaggtt cggggtagat cctgacggct gtgagcaatt gattgatggt ggcccggtgt
      301 cgctggtcgt gaatgtagcg tcgatgttgc ggccgaatgt tccccacgta gattcgtgcg
      361 ctgaggccct gcggatcgcc cagttgatcg agccccgcct accgaaacct taaggtcctc
      421 ccgcaccaca tggatgcttg tcgttgtcga gacaccgttt gggacagcga tatggatgct
      481 tattgggctt gactgcacca tcgatgcgct ggctccggtg tggcctggtg tcgagttggt
      541 accggctggc tgccgggagc tgagcttcgg gggccgctct ctcaaccggc agccagccag
      601 cggttcagaa gtgaggatgt ggtccggttg ttcttgaccg gcggctggcc gagatcttga
      661 gggcgcaccg atggcgaagg tgcccttggc tggattgagc atccgatcca gatcactgcc
      721 gcgcaccgag tggtgctgat ctccgcgcgt tcgatgtcgt cggccgcgga ctgccagccg
      781 tggccgtccc cagtaccgcc gtccacccag atgatctcta tcgcactgcc ctcgacctgg
      841 cgctccacca gaccacgacc ggggatgatc agcgaggtcg tccgctggcg ccacgcgaag
      901 caattgcggc tgaatccctc gataaggacg aggtcaaccc ggccgccgct gatgcggtgg
      961 ccaactagtg gcccgtcttc acctgggcag ccacgtcgga actcgaaccg cacagcttga
     1021 gactgtcaag caattcgcat ggcgatctcc agatccgggc tgtcagtccg catcgaacgc
     1081 accatcggtc gtccctgcgg ccgggcgtcg gcggcgtcga acaccgcgga cccggaggac
     1141 aggccgacgc cgccgcccgc accgagcgtc cgcacacggc gacataacag cctgcgctcc
     1201 cgggcgccat cgcctcctca cgcaccaggg gctcgatgct gtcctggctg ctggtcaccc
     1261 gtacctcggc gatccgccac gcccggcgcg cagctagatc cgggctatcg gtctgtatgc
     1321 aaccactcaa ctcaaccgct ccaccgcggc actcgccgcc agcatgatcg agtgagacgc
     1381 ggcgcgaacc aaagtctgtt gggttactcg ccagcctgac ggtgaccagg acgtctcgca
     1441 ttgatgctat tgccgcgtgc acggcactcg ctctgggtga taccgcgcag tcgcgggagt
     1501 ggccagggta gtggccgcac tcgatcagtg ctgttcgatc tccgtcatca gaatccgcag
     1561 tgtcagggag tgcttctcaa ccggcagagc gtcgaatgcc gctcgcgcgt aggttgttcc
     1621 accgtcgtga tcgccagcgc gcacgagcat cagccctcgg tgcatctcca gatgagtccg
     1681 gaaccggggt aaagactccg gcagggtccg agccgcctcg tcctgcgcct gtagggccag
     1741 gtgttcctca cccaaccgcg cggccatcag cgagatgaac acgttgaacc gccaccacgg
     1801 caccgcataa tcggactcag catcgtcgga cccggcggcg tcgaacaccc tgccatgact
     1861 gcgttgagcc gtccgagcga cggccgggca tccagagcga tcgcttgctc ggcgaacaca
     1921 tcggcggcat caagacacgc gccctcatga cccagcgcga tggccgcccg accacgaacc
     1981 cagactcggg tgtcctcatc ctcggatcga tcggcgaacg tagccgcatg ccgataccac
     2041 gtgagtgcgt tggcgccgtc gctaccggga aacgtctttc catagagggt cgccagcttg
     2101 gcgccaacag cccagaggca tggcgagtcg agttgctgct gaaggacaac aagatctgca
     2161 gcaaggcgtt tctggatctc agcggcgcct gaagtcatgt aatcgcggcc atgggtgaca
     2221 actgcgtgac cccagtcatc cgcgctcgga taggaaccgt agagcgcagc agtgaagccg
     2281 tgctcgatca aatcggaggc aaccaggggc gcaatgctgg cgctgacgac gttggtgaga
     2341 aagtgacgac gatccacgcc agtctgctcc aaaatctcaa tgggaacttg caacacggtg
     2401 gcgaggtgcc gcaaccacca cgggccggga gtgcacttac cggtctccca gcgggagatg
     2461 ttctcgcggg tcacggtcgc atgattggtt accttgcaca acgcggtggc aagtcgggac
     2521 tgcgaccgac ccagggactc gcgtagctcc cggatgacag caccgagcgc ggctgcctgg
     2581 ggggtgaccc gttcccgcgg ccgacagcca tcggacgcct acctcctgac gtgctggccg
     2641 cccacactac ggcaccatca tcgggccgtt cctcaagtgc atgatcttga cgcccgtcgg
     2701 ctcactgtgg gctcatgccg gagtggcccg gacatggttc gactacgggt gcggtgagcg
     2761 agcgtggccg caccggtcgc atcgcgatgt gacccgcagc gttacgccag gtatgtcggc
     2821 cgctgcggcg cagtacggtg accgcgtcgt cgacgaagcc ttcgttgtcg agctgcccat
     2881 ttatcgccgc agtgccctca tcgagaacag ttttagtgac ctgctcatcg gcggcaccca
     2941 agtacccgtc aggctgacgg cggcagatgc cgttctgcgc gagcaataca tcgaggcgtt
     3001 catcaaaccg gatgcggaag gcatcgtcgt tgcgaattat tctcactgct tctgcatcgc
     3061 agatattctc gtgactatcg tcgtgaagtg catactacgg agtgatggca acggggcgga
     3121 tattgtcgat gctgaaggcg aactccctgg gtacgagcag cccgtcttgt tcctggtaga
     3181 cggtgtagcg tgagctggtc gaatacgcca gttatttccg caaatgaata gaccgccggg
     3241 gcgcaataag ctggtggccc acacgagtgt acgttcccga aatgcgtggt cgaagtacat
     3301 gagtacgttc atacatcgga tcacgtcaac accccctcga tgtcgactga gccgatttcg
     3361 ccgtgcgtca gcctcaggtt gtcgcgttcg taatgccgga gcggattgag caccaggcgt
     3421 gcccctcggt gcgccatcgc gtcaggaccg gatctgccgc catggtgtcg gtctgggaaa
     3481 agcgcagcag cccctcgacg tcgaagcacg cgtagtcggc cccgtcgtag acgaagtaac
     3541 ggtcgaacga cggatcgtca ccgatgaccc gccagccggg gagggtggtc gcgctgtcca
     3601 aggcagtcac cggcgggaag ccacagccga gatccagtag gaccggctcc cgccccggtc
     3661 ggtgccaagg gttgtgggcc aggtaggcat ccattcgtcg cttatgaggt acttaccgcc
     3721 agtatcccgg gccttcgcga gctgcgatga tctcctgcat gagtcttcgc cggcccactg
     3781 cggtggctgg gctggtcgcc ctgctcacca gcagtggggt aatgcacttt gcggcgcccg
     3841 cgcaattcga cgcgatcgtt cccgggcagc tgcccggcgg ggcccgtatc tggactcacc
     3901 tctccggagc ggccgagctg gtgatcggcg tgctgatcgc aatcccccga acccggcggc
     3961 tgggtgggct gctcgccgcg ctgctgttcg tcgcggtatt tccggccaac gtgaagatgg
     4021 cgatcgattg gtcgacccga ccggcgtgga tgcgcgcgct ggcatacggg cggctgccac
     4081 tgcagatccc cttggtggtg tgggcactgc ttgtataccg ccgttcggcg cccacggctc
     4141 gttcctagct gcaacgggcc gccaccgctc gtcgcaggcc agtgcggcat tgtgaccgcc
     4201 aagcggatca gttgccgacc gctcgtcgcg ccggtcgccg ctcctggcgc aagcgacacg
     4261 cctatccgtt tgcggggttt gccgcggccg tggccttacc gttacctttc cgcccgtcgc
     4321 agatcacgat ctggcgccga ctaggtgtca ttccagtgcc cccgaaccgg aatggcggct
     4381 cggccagcca gatccccggc gtgaaaggga ctgacagttg gcgcgtcacc gctccccccg
     4441 cggtagtcgg cggcatcccg atttcgtctc cccgcattcc cccgagcccg catcgcgcgg
     4501 tgcgcaccgc atgccccggc ccgggccggt gttgcgtggt cgggccgtga cggcagccgt
     4561 tgccgctggc gccttggccg tggccggtca cacgatgcaa accaccacat cgacggcgac
     4621 ggagcaggtc gccgatatcg cgccggccgc gctgacggga ccgtcgctgg agcccgaggt
     4681 gatgcagctc aacctcgctc gtgacgccgt cacagagctc ccggccctgc gccgcgccgt
     4741 cgaacgggca gaccgcgcgg cggcggcgta tcaggacgcg gtgcgaagcc gcctcgggca
     4801 gccctaccaa gctgggaaca accacagcct ggacggttgg atcgccaagg cgctcgggct
     4861 gatgggactg ccccaggcct tggcggacgg ggtcaagacg atcatcatgc acgagtccgg
     4921 cggtaacccc aatgcgatca acaattggga cagcaacgcc agggccggta ttccgtcgca
     4981 gggcctcatg cagaccatcc ccagcacctt caaagcctgc gtactaccca gcctggctgg
     5041 tcgttcgatt accgatccgg tagccaatat caccgcagga atccggagca tgattgctca
     5101 ccacggcctt ggcgccgtga tgaacggcgg ccggcgggat gccaacggta actacatcgg
     5161 ttacggcggg gccggctgct cgtcttatga tctcaacgct ttcgcttccc agctgcgcaa
     5221 tctatggaaa gacgagccgc tgcccgggct gtagcaggca gcagctcgaa ttccgctcag
     5281 gacgatgctg aattggcccg gcgagttccg tgccccgcaa cacaatgtcg tcaggtggga
     5341 agcctgtcgt gatcgtcggc gttgcccggt ggtgacgccg acgtgaggag aatgccgtgg
     5401 ccgccccgca ggtgcagccg gtgcaacgag ttttgatgat cgcggcacat cccgacgacc
     5461 tggacttcgg atccgccggc accatcgcga cctggaccgg cgcaggcatt gaggtgtcct
     5521 actgcatcgt caccgacggc gacgccggcg gttttgatcc tggagtgccc cgctcagcga
     5581 tcggcgctat ccggcaggac gagcagcgca aggcggccgc gacgctgggc gtcaccgacg
     5641 tcgagtttct cggctatccc gacggccggc tcacggtcag cttcgaattg cggcgcgata
     5701 tcgcccgcgt catccgccgg acccgcccgg accgcgtggt ggtcccatct ccccatcgcg
     5761 acctgcgaaa cgtctatgtc agccaccccg accaccaggc ggccggcgag gcggcgctgt
     5821 gcgcgatcta ccccgacgcc cgcaacccgt tcgcgcatcc tgagctggcc gaagaggggc
     5881 tggatgcgca caccgtgccc gaggtctggg tgctgagcgc caatgaccgg gccgaccatt
     5941 acgtggacat caccgatacc ttcgaccgca agatcgtggc gttgcgcgcg cacaccagcc
     6001 agaccgcaca catgacgacg ctcgaggagc gaatgcgggc ctggggatcc atgcaggctc
     6061 aggcagcggg ccttgccgag ggcaggttgg ccgagggcta cctcgtgctc gacacccgct
     6121 gatacaccgg tcgcagatgt gccagggatg cacgggcgca acatcgagcc gcccgaccca
     6181 cccaggtgct gccgccggtt gaccccggtc cgaggtctac gcccggacgc cgccgctgcc
     6241 ggtcagcaga acgtgggcca ccagctcagg gttgtcgttc atcggcacgt gcccgcaacc
     6301 gggtagccgc agcagccgag catgcgggat cagccgcgtg atcgatgcgg cgcggggccg
     6361 ccggaagagc aagtcccgcg atccccaggc gatggtcact ggcacgtcat gcacccgacc
     6421 ggtgaagata atcctctcgc cggcggccag gctggggcgg aaacccaccg cgtcaatcat
     6481 cgcgcgcatg tcctcgagca acacgctcgg ctcgagcaga tccggacggc caaacaggat
     6541 gccgcacatc agggtgcgcc cggccgctgt ccgggacagc cggttcgcga gcttcggagg
     6601 catgtaccgt gcggtgcagc gcaccgagcg caccatgctc agggacacgc gccgccccat
     6661 cgggctccac agcccggccg gagacagcgc ggtcgcactg ctgaccatcc cctgctgggc
     6721 cagcaccagg gagaccaaac cacccatcga gttgccggcg acgtgcggcc ggtccagccc
     6781 cagatccgcg aagaactctt tcagtacggt caccgcggtg tccagctcat aggacaggtg
     6841 atccgggagc gggggtgact cgccgaatcc cgggaagtcc agggagatca cctcgcggtg
     6901 cctggccaac tgctcctgaa caggacgcca cgcttggcgc cggtgcccgg ccccgtgcag
     6961 cagaaccagc ggcgctccgg cgccgcaccg ctcataagcc agctgcacat cgaacactgt
     7021 atcgattttg tgactcgccg gtaactagtg cactagggta gagggaagcg ggttcaagaa
     7081 ggagtatcgc tgctcgtggg cgaatcattg gccgagctgc gggtcgcgcg ccggcaggct
     7141 tcggtgccgc ctatccacta cccaccggcc ctgccgatca cccagcacgt cagcgagatc
     7201 gccgcggcga tccgcgacca ccaggtggtg gtggtcgccg gggagaccgg gtcagggaag
     7261 accactcaac tgcccaagat ctgcctagag ctgggccgtg gcacccaggg caccatcggg
     7321 cacacccagc cgcgcagact ggcggcgcgc acggtggccg agcgcatcgc tgcggagctc
     7381 ggcgtcccag ttggtgatgc ggtaggctgg aaggtgcggt tcaccgatca ggcttccgac
     7441 gacaccctgg tcaagctgat gaccgatggc atcctgctgg ccgagatcca gtccgatccg
     7501 tctttggcgc agtacgacac gctgatcatc gacgaagcgc acgagcgctc gctgaacatc
     7561 gacttcgtat tgggttacct ca
//
LOCUS       DASVXZ010000522         5574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1221029, whole genome shotgun sequence.
ACCESSION   DASVXZ010000522 DASVXZ010000000
VERSION     DASVXZ010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5574
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1221029"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      233..389
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00379"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-AMP (ydaO/yuaA leader) riboswitch senses
                     the signaling molecule cyclic di-AMP; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="cyclic di-AMP"
                     /db_xref="RFAM:RF00379"
     gene            507..1523
                     /locus_tag="VF788_10880"
     CDS             507..1523
                     /locus_tag="VF788_10880"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HEX8934671.1"
                     /translation="MSVTVTAATVGLLASALPTTATADPAVPGDGQAALAQLAELNRQ
                     AEVLTESWHYARDQLNARRADLDRARADASGAAASADRARVVQSQYRGQVDRLTSASF
                     QGVRLSRLSALLVSDSPQDFLDQMSALDMLAVDNKHALDRLTGAVTQAQQAQRSANDA
                     AARAGQAEHDAARLEGDLTRSRAEMDRQIQVVTKRLAELTRQTRAAYLSGGNTHFPIN
                     LIGTGIPVQAARIALSKQGSSYVWGGDGPITFDCSGLVKWAFEKAGLPGLPHSAQEQA
                     RMGRSVSQAELQPGDLIALYSPISHIGIYIGDGLYVNAPQSGDVVKVVPVPWRQVTAM
                     SRIG"
     gene            1624..2745
                     /locus_tag="VF788_10885"
     CDS             1624..2745
                     /locus_tag="VF788_10885"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX8934672.1"
                     /translation="MPRILLVSNDFPPRSGGIQAYLHKLAMTLPAEAIAVYAPDWPGA
                     RSFDARLPFPVVRHPGALMLPTPLVLRRAVELIKELRCETAWFGAAAPLALLGPALRR
                     AGVQRVVASSHGHEVGWSMLPPGRVALRRIGADADVITAVSSYTRRRIASAFGPRAAL
                     ELLPPGVDCGAFRPDPAARTEIRRRHRLGEAPVVLCVSRLVARKGQDVLVRALSKIRR
                     QVPGTILLLVGDGPRRTALHRLAGSCGVDDAVVCTGGVPWSDLPAYYAAGDVFAMPCR
                     TRGHGLDVEGLGLVFLEAEATGLPVVVGDAGGARETVLPGETGELVDGRDIAAVSRAV
                     AMLLADPERAAVMGGRGRGWMLQDWQWSSRAARVAALLS"
     gene            complement(2761..4575)
                     /locus_tag="VF788_10890"
     CDS             complement(2761..4575)
                     /locus_tag="VF788_10890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-dependent synthetase/ligase"
                     /protein_id="HEX8934673.1"
                     /translation="MREFAVPATTKVADQENLTDAVWANAERFAASTSFRRRIDGGWV
                     DITAREFADQVTAAAKGLIAGGIERGDRIALLSTTRYEWTLLDYAIWAAGASTVPIYE
                     TSSPEQVEWILSDSEAKAIVVETSAHREMVQALADRLGQPAQVWQIDPLPSGGDPAGA
                     IEMLTALGSEISTDAARERAGAVGAEDLATLIYTSGTTGRPKGCEITHGNLLAVTRSA
                     LAEFPRLMQPSNSVLLFLPLAHVLARIIQTACVYARITLGHAPDVKNLVAELAEFRPT
                     FVLAVPRVFEKVYNSARQKAHAEGKGRIFDIAVSTAVEWSRALDTGGAGLALRAKHAL
                     FDQLVYSKLRMVLGSRCIAAVSGGAPLGERLGHFFRGVGVTVFEGYGLTETSAPATVN
                     TEKNLKIGTVGRPLGGVAIKIADDGEVLIKGPGVLRRYWHEEQATKEAIVDGWLHTGD
                     LGELDQDGFLRITGRKKEIIVTAGGKNVSPAVLEDRIRAHRLISQCMVVGDHQPFIAA
                     LITIDAEVLPAWRAEHSKPAGNSAADLIDDEDLRAEVQRAVDDANKTVSKAETIRKFR
                     ILAVDFTERDGQLTPSLKVKRAVVAKEFVAEIEALYAS"
     gene            4744..5532
                     /locus_tag="VF788_10895"
     CDS             4744..5532
                     /locus_tag="VF788_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019809559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX8934674.1"
                     /translation="MRVHVVSDVHGNAGALARAGDGADALLVLGDLIDFVDYHDHSAG
                     ILGSVFGPTAVHQFAQLRSGGAPGAASAFVRDLWAEVPDSQEVVRQAVIEQYERLFAA
                     LPSPTYATPGNVDLPELWPRFARAGVHVLDGQSTQIGGLNWGFVGGGLLPEGFIPQRE
                     PVFRSYLRTPDQFAAAVAALGRVDMLCSHIPPAVPELVYDVQARRPETGSQHLLAVIR
                     RDRPRAALFGHVHQPLAQRVRLGRTECVNVGHFQRTGAPHVVRC"
BASE COUNT          910 a         1798 c         1835 g         1031 t
ORIGIN      
        1 cgattgtggt gaccaccagc cccacaacgt tgagcggtcc gcaagggggg ttgagcggtc
       61 tcggcggtac gtaagctgat cggtggaacc gaacactgtt ccatgtgtga tgacgtccat
      121 cgtgcccagt ggccattttg ccttatcgct ggcgcgtcgg tggtgacagt gccggtaact
      181 tttcgtaatc ttcccgagac tttgcggtag gtgcctccca gacgggaggc gacgcaggtc
      241 gccgccgaat cggctgcgtt cggagtcgag ccggggatcc accttttcct gggtgaatcc
      301 gggtggggca tcatgcccgc ccggtagggc tgcgctacag cggcccgaac ctgtcagctg
      361 aacccggtag gcggtccaag ggaagaggag acagccgcga cgtgtcgtcg catcatctga
      421 agtccggtgt tgtggagtct ggtggccgga gactcggagt cctaagacga ctcggggttc
      481 taagacacgg tgtcgtgaag cgcagcgtgt cggtaacggt aaccgccgcg acggtaggtc
      541 ttctggcgag tgcgctgccc accacagcga ccgccgaccc cgcagtccca ggggatggtc
      601 aagctgcatt ggcgcagctc gccgagctga atcggcaggc tgaagtgctc accgagagct
      661 ggcactacgc tcgtgatcag ctgaatgccc gccgtgctga tcttgatcgc gccagagcag
      721 atgccagcgg tgccgccgcc tccgcagatc gcgcccgggt ggtccagagc cagtaccggg
      781 gccaagtcga ccggctgacc agcgcgtcgt tccagggtgt gcgcctatcc cggttgtcag
      841 ctctgctggt cagtgactcg cctcaagatt tcctggacca gatgtcggcg ctggacatgc
      901 tcgctgtaga caacaagcat gccttggatc ggctcaccgg cgccgtcacg caggcccagc
      961 aggcgcagcg ctccgccaat gatgccgcgg cgcgggctgg ccaggccgaa catgatgcgg
     1021 cccgcctgga aggtgacctg acccgttccc gggctgagat ggatcgccag attcaagtag
     1081 tcaccaagcg cctcgcggag ctgacacgcc agactcgagc cgcctacctt tccggcggca
     1141 acacccactt cccgatcaac ctgattggca ccggcatccc ggtccaagct gcgcgtatcg
     1201 cgctgagcaa gcagggctcg tcatatgtct gggggggcga tggccccatt accttcgact
     1261 gctcgggttt ggtgaagtgg gctttcgaga aggccggcct gccgggtctg ccgcactcag
     1321 cccaggaaca ggcacggatg gggcgtagcg tgagtcaggc cgagctgcag cctggcgatt
     1381 tgattgcgct gtattccccg atcagccaca tcgggattta catcggtgac ggcctctatg
     1441 tcaacgcacc acagagcggc gacgtggtga aggtcgtccc ggtgccgtgg aggcaggtca
     1501 ccgcaatgag ccggattggc tgagcccacc ggttatccgg tctggccaca acggcccgaa
     1561 ggcaccatct caggcaggtc gaggccgcag cgctccggcg gcgtcagaga taccgtcggg
     1621 cgggtgccgc ggatcttgct ggtgagcaat gacttcccac cacgatccgg gggaatccag
     1681 gcatacctac acaagctggc tatgacgctg cccgcagaag cgatcgccgt ctacgcaccg
     1741 gactggccgg gcgcgcggtc cttcgacgct cgattgccgt tcccggtcgt tcgtcatcct
     1801 ggcgctctca tgcttcccac gccgctggtt ctacggcgtg cggtcgagct gatcaaggag
     1861 ctgcgctgcg aaactgcatg gttcggcgcc gcggccccgc tggcgctgct cggtccggcg
     1921 ttgcgccgcg ccggggtaca gcgagtggtg gccagcagcc acgggcatga ggtgggctgg
     1981 tcgatgctgc ccccggggcg ggttgcgctt cgccggatcg gagcggatgc cgacgtgatc
     2041 acggcagtga gctcttacac tcgccgccgg atcgcctcgg ctttcggacc ccgggccgcc
     2101 ctggaactac ttccacccgg cgtggactgc ggagccttcc gcccggaccc agccgcgcgg
     2161 accgagatcc ggcgacgcca ccggttggga gaggccccgg tggtgctgtg cgtgtcccgg
     2221 ctggtggctc gcaaggggca ggacgttctc gtgcgagcgt tgtcaaagat ccggcgccaa
     2281 gtaccgggga ccatcctgct gctcgtgggg gacggccccc ggagaaccgc gttgcaccga
     2341 ctggctggct catgtggagt tgacgacgct gtggtgtgca ctggtggagt gccgtggtcg
     2401 gacctacccg cgtactacgc cgcaggcgac gtcttcgcta tgccgtgccg tacccgaggt
     2461 cacgggctgg acgtcgaagg actcggcctg gtgttcctcg aggctgaagc gaccggattg
     2521 ccggttgtgg tcggtgacgc cggaggcgcg agggagaccg tgctgcccgg cgaaaccggt
     2581 gaactagtcg acggccgtga catcgctgcg gtaagcagag ccgtcgcgat gctgctggcc
     2641 gaccccgagc gggcagcggt gatgggcggg cgcgggcgag gatggatgct gcaggattgg
     2701 cagtggtcta gccgagcagc gcgggtagcc gctctgctca gctaactcat cgtttcgcgc
     2761 tcacgatgcg tacaacgctt ctatctcggc cacgaactcc ttggcgacca ccgcacgctt
     2821 caccttcaga ctcggagtga gctggccgtc ccgttcggtg aagtcgaccg ccagaatccg
     2881 gaacttgcgg atcgtctcag ccttcgacac ggtcttgttg gcgtcgtcca ccgcgcgttg
     2941 tacctcggcg cgcaaatcct catcgtcaat gagatcggca gcagaatttc ctgcgggctt
     3001 actgtgctct gcgcgccagg ccggtagcac ctccgcgtct atggtgatca aggcggcgat
     3061 gaagggctga tggtcgccga ccaccatgca ttggctgatc agtcggtggg cacgaatcct
     3121 gtcctccaac acggccgggg acacgttctt gccaccggcg gtgacgatga tctccttctt
     3181 ccgtccagtg atccgcagga agccgtcttg atccagctcg ccaaggtcac cggtatgcag
     3241 ccaaccatcg acaatcgctt ccttggtggc ctgctcctcg tgccagtaac ggcgcagcac
     3301 accagggcct ttgatcagta cctcgccatc gtcggcaatc ttgatcgcca cgccacccag
     3361 cggcctaccc acggtgccga tcttgaggtt cttctcggtg ttcaccgtgg caggcgcgct
     3421 ggtctcggtc agcccgtagc cttcgaacac cgtcacccct acaccacgga agaagtgacc
     3481 aaggcgctcg cccagcggag caccaccgga gaccgccgcg atacaccgac tgccgagcac
     3541 cattcggagt ttggagtaga ccagttggtc gaacaacgcg tgtttcgccc gcaaggcaag
     3601 cccggccccc ccggtgtcga gcgctcgact ccactccacg gccgtggaga cggcgatgtc
     3661 gaagatgcgg cccttgccct ccgcatgtgc tttctgccga gccgagttgt ataccttttc
     3721 gaatacccga ggcaccgcaa gaacgaacgt gggccggaat tcagccagct cggcgactag
     3781 attcttcaca tcgggagcgt gcccgagagt gatccgggcg tacacgcagg ccgtctgaat
     3841 gatgcgcgct agaacatgcg ccagaggcag gaacaacagc accgagttgc ttggctgcat
     3901 cagccgtgga aactcggcca aagccgaccg ggtcacggcg agcaggttgc cgtgggtgat
     3961 ctcgcagccc ttgggtcgtc cagtggtacc tgaggtgtag atcagtgttg ccagatcctc
     4021 ggcgcccact gcgccagcgc gctcccgcgc tgcgtcggta gagatctctg agcccagcgc
     4081 ggtgagcatc tcgatcgccc cagccgggtc gccgccgctc ggtagcgggt cgatctgcca
     4141 cacctgggca ggctggccca gccgatcggc cagggcctgg accatctcgc ggtgtgcgga
     4201 cgtttccacc acgatcgcct tggcttcgga gtccgatagg atccactcca cctgttcggg
     4261 agaggatgtt tcgtaaatcg gcaccgttga tgcgcccgct gcccaaatag cgtagtccag
     4321 cagggtccac tcgtagcgcg ttgtggatag cagcgcgatc cgatcgcccc gttcaatacc
     4381 gcctgcgatg aggcccttgg ccgccgcggt cacctgatca gcaaactccc gcgctgtgat
     4441 gtctacccag ccgccgtcga tccggcggcg gaagctggtg ctggcggcga agcgctcggc
     4501 attggcccac accgcatcgg taaggttctc ctgatcagcc accttagtgg tggcgggaac
     4561 cgcaaactcc cgcacgggta cctccgcagc tcgcattgct taatcgtccc tggcaacgta
     4621 tcgcgcccta tgatttctcc aacagtcccg gcgtccggca atggccaccc aagtcgccag
     4681 cgggactgcc atcgatggct ggtcggccgg ggctctcctg gcgccggggt aacctccctg
     4741 attgtgcggg tccatgtggt gtccgacgtg cacggtaacg cgggcgcgct ggccagggcg
     4801 ggcgacggtg ccgatgcact gctggtgctc ggggatctga tcgattttgt ggactaccat
     4861 gaccattctg cggggattct cggttcggta ttcggaccca cagcggttca ccagttcgcg
     4921 caactgcgct ccggtggagc gccaggcgcg gcgtcagcgt tcgtgcggga cttgtgggct
     4981 gaagttccgg attcccagga ggtggtccgg caagccgtca tcgagcagta cgagcggctg
     5041 ttcgcggcgc tgcccagccc gacctatgcc acccccggca atgtagacct cccagagctg
     5101 tggccgcgct tcgcgcgcgc cggtgtgcat gtccttgacg gccagagcac ccagatcggc
     5161 gggctgaact ggggtttcgt gggtggtggc ctcttacctg aggggttcat tccccagcgc
     5221 gagccggtat ttcgctccta ccttcggacg ccagatcagt tcgcagcagc cgtcgcggcg
     5281 ctcgggcgag ttgacatgtt gtgcagccac atcccgccgg ccgtccccga gttggtctac
     5341 gacgtgcagg ctcggcggcc cgagaccggc tcgcagcacc tgctcgcggt gatccgacgg
     5401 gaccgacctc gtgcggcact gttcgggcac gttcatcagc cgctggccca gcgagtccgg
     5461 ctagggcgaa ctgagtgcgt caatgtcggg catttccagc gaaccggcgc cccgcacgtg
     5521 gtgcggtgtt gatcactctg tgcgtcgaga tgaccggtaa cctgcgccgc atgg
//
LOCUS       DASVXZ010000523         3285 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_924862, whole genome shotgun sequence.
ACCESSION   DASVXZ010000523 DASVXZ010000000
VERSION     DASVXZ010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_924862"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..767)
                     /locus_tag="VF788_10900"
                     /pseudo
     CDS             complement(1..767)
                     /locus_tag="VF788_10900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611109.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
     gene            complement(2446..>3285)
                     /locus_tag="VF788_10905"
     CDS             complement(2446..>3285)
                     /locus_tag="VF788_10905"
                     /inference="COORDINATES: protein motif:HMM:NF025114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX8934675.1"
                     /translation="AYSRLMGQVDGLPDTRRSIPLGEMIRMWDEYITQRRFPIREWSK
                     VLSVARTDKGRFMVCVECDHGLQRYDAFNVVAAPGNYQFPRIPSFAKHLGSEIQQFRV
                     GTYTNPSAIQNGAILVVGGGQTGMQLSEELAGAGRDVYLATSKVKGTPRNYRGEDVTF
                     WLDRIGILTAPKEKCGYPDDHNRMPIVGHDHPISHHSLARLGIKLLGRLRDISKDGAT
                     AIFRDDLHANIMFAQRGYEKLINQIEEWIASVDPTVRARYPAADDRASVGASSATPGI
                     GAT"
BASE COUNT          623 a          997 c         1030 g          635 t
ORIGIN      
        1 gaggaattcg cggcggaagc tgccgtggaa ccgctccacg ttcccggtgg tggtgggact
       61 ggcgggttcg gtgagccggt gggtaatgcc gttgtcccgg cagatcttcc tcgaagagta
      121 cttctccgcc cttgccgaag cgatcgatga attgtttgcc gttgtccgtt aatacttcct
      181 cgggcacccc gtagcggcgc agcgcgtcgg cgaaggccag gcagaccgcc cggtggcccg
      241 agggacaaca gtggccatca cgcagaatcg ggaatggtca tcgacgccgg tgacgagctt
      301 gcactcggtc ccatcagtaa ggaacagccc ccgacgatgt cgatctgcca cagcgccatc
      361 ggtgcttcgc gttgccaacg ccggtactcc cggcgcttac cgcgccgccg gcccggctcg
      421 atcaggccgt ggcggcgcag aattcggtgc accgtggatt tccccggcga caggctgccc
      481 tccggggtgc tggtggccag ctcgtgggcg atccgccggg gtccccagcg ggggtgttcg
      541 cggcgcagct cacacacccg ggcctccacc tcagcggagg cttggtgtgg gcacgccggg
      601 ggccggtgcg tccggtctat caacccggcc aggccatcct gggcataccg ggtcaaccag
      661 gtatgcaggg tttgccggga gaccccgaac tgggccgcca cgacgatctt gggttcaccg
      721 cgctcgacgg ccagtacggc ccggtagcgc tgctcgacaa cagacaagtc gaccagagcc
      781 aatcccgacc ccccatcacc gtccatatcg aacggcgata ggaaagtcga tcaggcccaa
      841 acgtcaagga tcagctggga ccggcgtgtc aagcatcagc cgggaccaca cacgttgaca
      901 gtgcgttgtg ttgccgaatt gtcctctatg ggatcaaggc cgccttcggc ggcgtgttct
      961 ctggtgacac agcgtctggc tgatcgaccg aacacacgac gctgcgcgcg gcccggtcga
     1021 tcagccgaca cagccaaaga caggcggcgg caaggaccag gacagcgccg atccacgtcc
     1081 agcaaatcaa tttcgcgaac taacgaagtc aacacctggc tgcgttggac accaagcgca
     1141 tccccccgtc tgatcgacgt tcccgatcga cagctcagcc cgcaatcggc ttgttgggct
     1201 gggtcaccaa ggtcatcttt gacaccgtga tgacccaagc cgaggtccgg tggggaccgc
     1261 accacgtgca tcgctcatga gaaccgaggc cacccaggag cttgacttac agcccccgtt
     1321 ccctggtcgt gggcgtgatc aagttcacgc atgtctcatc gggaccccaa gcgaaccgca
     1381 cgttttgaca gccgatagcg cgtgaccgaa cgcgcccact ccgctggtca tctatgttag
     1441 aagatcggca tagatggcgt gattcaaacc ccgcggtgcg gtcgtgaggg catctcgtcg
     1501 gcgcagcgtg tagaccaggg agctaccgcg cagtatgagc ggtgatcggt cagccctttc
     1561 gtccacgaat cgtccacgtc gcgccgccga tgtaaaggcc gctacgcgcc gcaagcggtg
     1621 gcctacggcc agccttgaca tccgccatcg cgacgagttc agcggccagg acgaggggat
     1681 gaccagcagg taccacttga cccggtgcct ggcatcgcgg tcaccccgcc acaacttcga
     1741 tcttgtcgcc ttccttagtc gagttgtttg ggcaagggcc ggcgcgcagt ccctgtgcga
     1801 gggtggtggc gtttccggtg ctccaaaagt gcatgtaaga cagccgagga gactcatagg
     1861 gcaggtggtt gtgcaacgag atgatcgcga tgccatgtgc tgcagggctt ggatcaccgg
     1921 ggtgatctga tcggcggtca tcgcgtaatc gccgttgagg gccgctcggc cgccacccag
     1981 ggggctgaaa catcagcaat gtggaggctt ccattaacgc gggcagagtc aaatgggcgc
     2041 gggtgtcggt gatctgctgg gcccgttccg gtctcctggg gcgagaccgg cgaactggtt
     2101 atcggcgggg tcgacatggt ggggggcagc ggccctgatg agggtatttc ggatgatgac
     2161 atacttgtgg tgacgtgtcg tggcttttgg cctgtgccac ggcgcagccg cgttgcagtg
     2221 tgggccgcat cgaggtggaa accggccacc gttcccgatg cgcaggttcg gagcccgtca
     2281 aagcctagcc aatagaatcc gtcgacagcc gtctcacagg aattcggaaa cccacctggg
     2341 tccagggttt ggcggatttc gttgatttgc agccagctca aatcggtgag ccaaccagtg
     2401 gcccatacga cggcgcggat accgtgctgc cggaaagaca aggccctagg tggcgccgat
     2461 gccaggagtg gcggatgagg ctcccacgct ggctcggtcg tcggcggcgg ggtaccgtgc
     2521 tcgcaccgtg gggtccacgc ttgcaatcca ctcttcgatt tgattgatca acttctcgta
     2581 gccccgctgt gcaaacatga tgttggcatg aagatcgtcg cggaatatcg cggtcgctcc
     2641 gtctttagag atatctctca gcctgcctaa caattttatc cccaggcggg ctagcgaatg
     2701 atgggaaatt ggatgatcgt ggccaacgat aggcattcga ttgtggtcat cgggatatcc
     2761 acacttctcc ttgggggccg tcaggatccc gatccggtcg agccagaacg tgacgtcctc
     2821 gccacgatag ttgcgcgggg ttccttttac tttagacgtc gccagataca cgtcgcggcc
     2881 ggcgcccgct agctcttcgc tgagttgcat gcccgtttgt ccccctccta ccaccaggat
     2941 cgcgccattc tgaattgccg acgggtttgt gtaggtcccg acacgaaatt gctggatttc
     3001 ggagccgaga tgtttcgcga agctgggaat ccgggggaat tgataatttc ctggagcggc
     3061 gacaacattg aaagcatcgt aacgctgcag accgtggtca cattcgacac agaccatgaa
     3121 acgccccttg tcggttcgcg caaccgatag aactttgctc cattcgcgga taggaaagcg
     3181 tctttgcgtg atgtactcat cccacatgcg gatcatctcg ccaagtggga tgctccgtct
     3241 ggtatcagga agaccatcaa cttgccccat caaccgcgaa taagc
//
LOCUS       DASVXZ010000524         1749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1580091, whole genome shotgun sequence.
ACCESSION   DASVXZ010000524 DASVXZ010000000
VERSION     DASVXZ010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580091"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            357..992
                     /locus_tag="VF788_10910"
     CDS             357..992
                     /locus_tag="VF788_10910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEX8934676.1"
                     /translation="MVTIPAGQVTLSDRRTRRAWYVNVASFEISVNPLTQGEYADITD
                     EWPGATRGERLPVESVSWWDAIRFCNTLSEHAGLAPVCCIVGDDVTWHTSATGYQLPT
                     EAEWERACRAGTTGPRYGALDVIAWYRDNSEGRPHEVSGKQPNAWGLHDTLGNVWEWC
                     WDLYDPEVYGTYRVLRGGGWFDEHWSCRASVRWRSHPTYRIDDVGFRIARG"
BASE COUNT          310 a          500 c          584 g          355 t
ORIGIN      
        1 atcagcgaat accagatcac agcatgatcg atcagtaccg gaaaacgcag gtcatgcccg
       61 caaccctata ttcgagcccc acaggcgccg gttgaggatc agtattcggt cgagcagctc
      121 gcggcggatg gtgccgatct atcgtttggc gatcgcgttc gctcggcgtg ctctgcatca
      181 ggggacattg catcacggga catttcgcca ggggacactg tttggcaccg cgctcaggac
      241 cgccatcggc gccgggctgg gcattggcga tttcttgaca ccgaggttgt gccacccggc
      301 ttgagtggtg agttggtagt gtctgctaag catggagccg attggcttcc cctgagatgg
      361 tcaccatccc cgcaggtcag gtcaccttgt cagatcggcg aactcgccgc gcctggtatg
      421 ttaacgtggc ttccttcgag atctcagtca atcctctgac gcagggcgag tacgccgaca
      481 tcactgacga gtggccaggc gcgacacgcg gggaacggct gccggtcgaa agcgtgtcgt
      541 ggtgggacgc gatccggttc tgcaacactc tttccgagca tgctggcctt gcccctgttt
      601 gctgcatagt cggcgacgac gtcacgtggc acacctcagc caccgggtac cagctgccaa
      661 ccgaggctga gtgggagcgc gcctgccggg ccggaacaac cggtccgcga tacggcgccc
      721 tcgacgtgat cgcctggtat cgcgacaact cggagggaag gccacacgaa gtgagcggga
      781 aacagccgaa cgcctggggt ttgcatgaca cgttgggcaa tgtctgggag tggtgctggg
      841 atctctacga ccccgaggtg tacggcacct atcgggtgct gcgaggcggt gggtggttcg
      901 acgagcactg gagctgccga gcctccgtgc ggtggcgcag ccacccgacg tatcggatcg
      961 acgacgtcgg attccgcatc gctcgcggat agtcagcccc agcgctcggt cgtatccgag
     1021 tgcaagcggc cgtatctgtg gaccgacgcg aagccgttga ggtctgtcgc ggctagggat
     1081 cggtgttcga gacatcgatg ggctgccact gagggccatc ccggcggcgc ttgacgatca
     1141 gaagcgcgct agatcagcgt accctcagcg gctataggtc accgcatagt catgcaggcc
     1201 ttgtcgtcga gcgcaaatgt cctgtcatgc cgctgagcgc tccttcgatt catgcatgag
     1261 ctggtggcgg ttttgcatga tcatccgtac aggatgcggg gtggatagca cttattcgag
     1321 gcaggcttat gtcccagccg gtgatggcgg taactctggt catgcgggta tccctgatgg
     1381 cacaccccag attctgttca ccgacgcaac gtctggttcg aaggcagtcg tcgatgtacc
     1441 agcgaccgga ttgtgctgct ggtgttcggt tcctggcggc cgtacgggaa aggtcgggtc
     1501 aaaccttcgg tccgggtagc cggggtcggt aaggcaaccg gctaccggtg gcggcgcgag
     1561 tcgttcccag tcctccggga aagtggttgc agcatcaagg atgcctgggt gggtttcgta
     1621 aagtgagtcg gccccatgtg tcctcacgga tcttggctcg gttgcaggta caagtcgcgg
     1681 aagtggtggc cgacgacgtt tcagcgggcc tgcttggcct gcgggtgcag ctcgatcagg
     1741 tcaacgagc
//
LOCUS       DASVXZ010000525         3560 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_566190, whole genome shotgun sequence.
ACCESSION   DASVXZ010000525 DASVXZ010000000
VERSION     DASVXZ010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566190"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VF788_10915"
     CDS             complement(<1..293)
                     /locus_tag="VF788_10915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010310482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX8934677.1"
                     /translation="MSTTLLLDGRIPSVAGATALAITDGTVAWAGDDTTGRVCFGDAE
                     EVIELHGALVTPAFVDAHVHATSAGLLSSGLDLRGCVTLTQCLEMVALRSRPGT"
     gene            complement(373..816)
                     /locus_tag="VF788_10920"
     CDS             complement(373..816)
                     /locus_tag="VF788_10920"
                     /inference="COORDINATES: protein motif:HMM:NF016102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEX8934678.1"
                     /translation="MPVLLILLAATVVELTVLIAVGHAIGVLATIALLILASLVGAAL
                     LRREGARTLSAFVEALRTRRPPHQELLDGMLIATAGVLIVLPGFVSDILGLLLLLPPI
                     RAVVRRRILRSASLRTPPPYAPGAVVEGEVVDESSARRSSTGELR"
     gene            1119..1739
                     /locus_tag="VF788_10925"
     CDS             1119..1739
                     /locus_tag="VF788_10925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEX8934679.1"
                     /translation="MSGLPTGAATAAELFERRVAPLYHLADDAATIATACHAMAVRFH
                     RGGTLVVFGTGSASTDAQHVVVEFVHPVIMGKRALPAISLTADVATVTGIAGTEGFDE
                     VFAHQLRHLASARDIALGVSPDGNCASVLRGLAAARELGMLTIALVGGDGGQISSLQG
                     ADHIVIARSDDPRVIKEVHVTAYHVLWELVHVFLQHPDLLEPRAVA"
     gene            1736..1951
                     /locus_tag="VF788_10930"
     CDS             1736..1951
                     /locus_tag="VF788_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase assembly protein HupF"
                     /protein_id="HEX8934680.1"
                     /translation="MTIPECHGEVCITCSDQAVAVRIVELLPDDLAVVDTGSGMEEVS
                     VAFVSAGIGDEILVHAKEAIAVLGGPQ"
     gene            1948..2751
                     /locus_tag="VF788_10935"
     CDS             1948..2751
                     /locus_tag="VF788_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEX8934681.1"
                     /translation="MSPGTNGSGITGSAAWSADQSRSDDLATLYPFLYSHPENVGHDS
                     PAAGDLEAVLAEVRRSTVDKVHQIVALRQEVLAQESQRLAACASAMAASFVNGGRLFA
                     IGNGGSCTDAADLASLFLHPGPGWRALPAFALTGDIAVLTALSNDVSFDVVFARQIAA
                     FGRRGDVVVGLSTSGNSTNLVRAFEEASRRGLLTVGLAGYEGGAMAELGSIDHLFVVP
                     SDSVHRIQEAQTTIYHTLWELTLNELTTGRRDPAQVERREVARGVGDHG"
     gene            2744..>3560
                     /locus_tag="VF788_10940"
     CDS             2744..>3560
                     /locus_tag="VF788_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression protein HypE"
                     /protein_id="HEX8934682.1"
                     /translation="MAEEESPIHILWINCGLSCDGDSVALTAATQPSIEEIALGALPG
                     LPKIAVHWPLIDFECGPEQGADNFIEWFWKADRGELEPFVLVLEGSIPNESINGDGYF
                     TGFGRHPDTNQPITINEWIDRLSPKATIVLAVGTCATYGGIHGMAGNPTGAMGVPDYL
                     GWDWKSKAGIPIVCVPGCPVHPDNMSETLLYLLYQAAGAAPMIPLDEHLRPQWLYGKT
                     VHEGCDRAGYYEQGEFAKTYDSPKCLVKIGCWGPVVKCNVPKRGWINGVGGCPN"
BASE COUNT          641 a         1119 c         1163 g          637 t
ORIGIN      
        1 gtgccggggc gggagcgcag cgcaaccatc tcgaggcact gggtgagagt gacgcagcca
       61 cgcagatcca gcccactgct gagcaggccc gctgatgtcg catgcacgtg ggcgtccaca
      121 aaagcgggag tgaccagcgc gccatgcaat tcgattactt cttcggcgtc gccgaagcag
      181 acccggccgg tggtgtcgtc ccccgcccag gccaccgtcc cgtccgtaat agccagcgcg
      241 gtagccccgg cgaccgacgg gatacgccca tccagcagca acgtggtgct catgttcgca
      301 gtattaccgc cgaccccgac cttcttgccg atcggcctgc actggcgatc ggcctgcact
      361 ggggacctcc ggtcagcgaa gctcgccggt cgaggagcgc cgcgcggatg attcgtcgac
      421 gacctcgccc tcgaccacgg cacctggtgc atagggcggt ggtgtgcgca gcgacgcgga
      481 gcgcaatatc cgccgccgga ccaccgcgcg gatgggcggc aacagcaaca gcaggcccag
      541 gatgtcggac acgaagcccg gcaagacgat gagcactcct gcggtggcga tcagcatgcc
      601 gtcgagcagt tcttgatgcg ggggtctgcg agtgcggagt gcctcgacga acgcgctcag
      661 agtgcgggca ccctcacgcc gcagcaaggc cgccccgacc agcgacgcaa ggatcaatag
      721 tgcgatagtc gccagcaccc ctatcgcgtg tcccaccgca atgagcaccg tcagctcgac
      781 aacggtggcg gcaagcagga tcagcagaac cggcaccccg gaccccctga catgtggtgg
      841 tgagctctgg cttccgtagt gcctaacgcg cgaaggcccg acttcgctcc cggatcgaaa
      901 catcgctgtc acatcactgt ggaactcgac gacaccgatc gtcctgggtc tggttaggga
      961 aatatgtccg taatgagtag cccttggcag cgctgatgaa gccgttagat gaaatcgagt
     1021 tgaactcacc gaccgtgggg ccttgcccat cgatccgggc gccccctatc gtgatgtctc
     1081 tcacgtgcat gaccaaccag ggtcgggagg tgtgcggcgt gtccgggtta ccaaccgggg
     1141 ccgccaccgc cgcggaactc ttcgagcggc gggtagcacc gctttatcat cttgctgacg
     1201 acgccgcgac gatcgctacc gcatgccatg ccatggccgt tcggttccac cgtggtggca
     1261 ctctggtggt cttcggaact gggtcagcca gcaccgatgc ccagcacgtc gtggtcgagt
     1321 tcgtccaccc ggtgatcatg ggtaagcgcg cgctgccggc catctcgctg actgcggatg
     1381 tcgctacggt gaccggtatc gccggcacgg agggcttcga cgaggtgttc gcgcaccaac
     1441 tgcgccacct ggcatcggcc cgcgatatcg ccctgggagt ctccccggac ggcaactgcg
     1501 ccagcgtgct ccgcgggttg gccgctgccc gtgagttggg catgctcacg atcgcgctcg
     1561 tcggtggtga cggtggacag atctcgtccc ttcaaggagc cgaccacatc gtgatagccc
     1621 gctcggatga tcctcgggtg atcaaggaag tgcacgtcac cgcttaccac gtgctctggg
     1681 aactggttca cgtgttcctc cagcatccgg acctgctaga accgagggcc gtcgcatgac
     1741 cattccggaa tgccacggcg aggtgtgcat cacgtgctcg gatcaagccg tcgcggttcg
     1801 catcgtcgag ctgcttcccg atgacctggc cgtggtggac accggatccg ggatggagga
     1861 agtgagcgtc gcctttgtgt cggcggggat tggagacgaa atcctcgtgc acgccaagga
     1921 agcgatcgcg gtcctgggag gtccacaatg agcccaggaa ccaacggttc cggcatcacg
     1981 gggtcagcag cttggtcggc tgaccaatct cgatctgacg acctggccac gctgtacccg
     2041 ttcttgtatt cacaccctga gaacgtcggt catgacagcc cagcagcagg agatctcgag
     2101 gcggtcttgg ccgaggtgcg ccggtccaca gtggacaagg tgcaccagat tgtggcgctc
     2161 cggcaggagg tcctggctca ggagagccag cggctggccg cgtgcgcctc ggcaatggcg
     2221 gcatcgttcg tcaacggcgg ccggctgttc gccatcggca atgggggaag ctgcaccgac
     2281 gcagccgacc tcgctagtct gtttctgcat ccgggaccgg gatggcgggc attgcccgcc
     2341 ttcgcgctca ccggtgatat cgcggtgctg acggcgctgt cgaacgacgt ctcatttgac
     2401 gtcgtcttcg cccgtcagat cgcagcgttc gggcggcgcg gtgacgtcgt cgtcgggctg
     2461 tctacttcgg gtaattccac caacctcgtg cgcgctttcg aagaggcgag caggcgtggc
     2521 ctgctcaccg tcggcttggc gggctacgag ggtggggcaa tggccgagct gggcagcatc
     2581 gaccacctgt tcgtggtgcc ttctgattcc gtacaccgga tccaggaggc acagaccacg
     2641 atctaccaca cgctgtggga gctcactctc aacgagctga ccaccggaag gcgagatccg
     2701 gcacaagtag agcgacgtga ggtcgctcgt ggagtagggg atcatggctg aagaagagag
     2761 cccaattcac atcctgtgga tcaactgtgg cctgtcctgt gacggtgatt cggttgcgct
     2821 gacagcggca acgcagccga gtattgagga gatcgcgctg ggagcccttc ccggcctccc
     2881 caagatcgct gtgcactggc cgctgatcga tttcgaatgc ggcccggaac aaggagccga
     2941 caacttcatc gagtggttct ggaaggccga tcggggtgag ctggaaccgt tcgtgcttgt
     3001 ccttgaagga tccatcccga acgagtccat caacggtgat ggttacttca cgggtttcgg
     3061 gaggcatccc gacaccaacc agccgatcac cattaacgag tggatcgacc gcttgtcgcc
     3121 caaggcgacg atcgtgctcg cggtcggcac ctgtgccacc tacggcggta tccacggtat
     3181 ggccgggaac ccgaccggcg ccatgggcgt accggattac ctgggctggg actggaagtc
     3241 caaggccggg atcccgatcg tctgcgtacc cggttgtccg gtccatccgg acaacatgtc
     3301 cgagacgctg ctctacctgc tttaccaggc cgccggtgct gcgccgatga ttccgttgga
     3361 cgagcacctg cgtccgcagt ggctgtacgg caagaccgtg cacgagggtt gtgaccgggc
     3421 cggctactac gagcagggcg agttcgccaa gacctacgac tcaccgaagt gcctggtgaa
     3481 gatcggttgc tggggcccgg tagtgaagtg caacgtaccc aagcggggtt ggatcaacgg
     3541 tgtgggcggg tgccccaacg
//
LOCUS       DASVXZ010000526         2183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1222132, whole genome shotgun sequence.
ACCESSION   DASVXZ010000526 DASVXZ010000000
VERSION     DASVXZ010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1222132"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            509..1693
                     /locus_tag="VF788_10945"
     CDS             509..1693
                     /locus_tag="VF788_10945"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEX8934683.1"
                     /translation="MAQIIEESHTASGDDLPRVIAEAVSLVGLTTQMYLVDLAQRTLW
                     PIPKDHTGAVAVEGSLAGRAFQFVMVLAGTDPDAGVVLWVPMVDGTDRLGVLRMGLPS
                     GTDGEDPGLRQRCSVLAGLAGHLVATKFAYGDALNLARRTTPLTVAAELLWQLLPPLT
                     FASRDLVITAVLEPHDRVGGDGFDYAVDKKVAFCGLFDAVGHDLQAGLTTAVALAAIR
                     NARRSGEHDLNAMAHRADTEIITQGPGTRFVTAALARLDTSTGELSYLIAGHPPPLLL
                     RANRTVKALQCGRRVPLGVSGRDVGVVHEQLEPGDRLLFYTDGITEARDAHGRSFGTD
                     RLIDFAERSGADGLPAPETLRRLAHHILKHQKGLLQDDATLLMLDWRPINPSVAPLPV
                     TE"
     gene            1798..2004
                     /locus_tag="VF788_10950"
     CDS             1798..2004
                     /locus_tag="VF788_10950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934684.1"
                     /translation="MNQYLCASRTSVLAVPIMFAQVFCCSLIMLSNIEAKIWTGVNIM
                     ARPGSRPDAVFDVAGWTQFITWCA"
     gene            2001..>2183
                     /locus_tag="VF788_10955"
     CDS             2001..>2183
                     /locus_tag="VF788_10955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934685.1"
                     /translation="MTAGLGSPALLSLRPRQPLRSGLALWSGRASRPCRPWFPGRPLL
                     TAQTLLAAGALWSGLAL"
BASE COUNT          371 a          744 c          679 g          389 t
ORIGIN      
        1 ggattgtatg caattcacct gtgaatcccg atggtgggta ggaagcttcc ccccaaagct
       61 catcgagagg cactattgca ttgacggacg acaggctcag ggaggctgag ccgatgcgtc
      121 gtcgccctga ccgatgtcgc aacggctgcg ctcagcgcga gtgatcagtg caggacatgc
      181 gttcgtccca acctgcgccg cggaactcga attgtccgtc gaccttaacc cgaaccacca
      241 gctcccagca gcgttcaccg aactcgccca ggccatccaa acagcacacc ggccgcagtt
      301 gaccgtgccc atccccccgc ttatgcaaca gcgccgggcg cttgccggac tcgaccggtc
      361 gctcgttgtg ctcgtggaaa tctgtggccg ccgggatcgt actttctcgg ggtgggtaaa
      421 ggcggtgacg ctgtggcccg cgttggtcta gcgctgtgaa ggctggtggg attgaccagt
      481 ggattcggag cggcagtggt ggcgggttgt ggcccagatc atcgaggaga gtcacacagc
      541 ctccggtgat gatcttcccc gggtgatcgc tgaggcggtg agtctggtgg ggttgacgac
      601 gcagatgtat ctggttgacc ttgctcaacg cacgctctgg ccgattccga aagatcacac
      661 aggagcggtt gccgttgagg gcagcctggc cgggcgcgcg ttccagttcg tcatggtcct
      721 cgcaggcacc gatcctgacg cgggcgtggt gctgtgggtt ccgatggtcg atggaaccga
      781 tcggctgggc gtgctgcgca tggggttgcc gagcggaacc gacggtgagg accccgggct
      841 gcgtcagcgg tgctcggtgc tagccgggct ggccggccat ctcgtggcca ccaagttcgc
      901 ctacggcgac gcgctgaacc tcgcccgccg caccacaccg ctgaccgtgg ctgctgagtt
      961 gctctggcag ctcctgccgc cgctcacctt cgcctcccgc gacttggtca tcaccgcagt
     1021 cctcgaaccg cacgaccggg tcgggggcga cggtttcgac tacgccgtgg ataagaaggt
     1081 ggcattttgc gggctcttcg acgccgtggg ccacgacctc caagccggtc tgacgaccgc
     1141 cgtcgccctc gccgcgatcc gcaacgcccg ccgcagcggt gaacacgacc tcaacgcaat
     1201 ggcccaccgc gccgacaccg agatcatcac ccaaggccca ggcacccgtt ttgtcaccgc
     1261 ggccctggcc cgactggaca ccagcaccgg tgaactgagt tacctcatcg ccggacatcc
     1321 cccaccgttg ctgctacgcg ccaacaggac cgtaaaagca ctccagtgtg gtcgccgagt
     1381 accactgggc gtctccggcc gcgatgtcgg agtcgtacac gaacaactcg aaccgggcga
     1441 ccggctgctc ttctacaccg acggcatcac cgaagcccgc gacgcccatg gtcgttcttt
     1501 cggaactgac cgactgatcg acttcgcaga acgcagcggc gccgatggcc taccggcgcc
     1561 agaaaccctg cgccggctgg cccaccacat cctcaaacac caaaaaggtc tgctccaaga
     1621 cgacgccacc ctgctcatgc tcgactggcg accaatcaac cccagcgtcg caccgctacc
     1681 agtaactgaa tgacatttcc atccgacgag caacgacggt caagcacgtg cagtcatcct
     1741 cgacgcgccg gtgggcacct cccgttaggg ggagagcgcc caccgggcgg acaatcagtg
     1801 aatcagtacc tgtgcgcgtc ccggacgtcg gtgctcgcgg ttccaatcat gttcgcccag
     1861 gtcttttgct gcagcttgat catgctgtcg aacatcgagg caaaaatctg gactggggtg
     1921 aacatcatgg ctaggccggg ttcgaggccg gacgcggtct tcgatgtcgc aggctggacc
     1981 cagttcatca cctggtgtgc gtgactgctg ggctcgggag cccagccctg ctgtccctgc
     2041 ggccccggca acccctgcgg tccgggctcg ccctgtggtc cgggcgggcc agccggccct
     2101 gccggccctg gtttcccggt cggcccctgc tcaccgcgca gaccctgctc gccgcggggg
     2161 ccctgtggtc cgggctcgcc ctt
//
LOCUS       DASVXZ010000527         2553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_56620, whole genome shotgun sequence.
ACCESSION   DASVXZ010000527 DASVXZ010000000
VERSION     DASVXZ010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56620"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VF788_10960"
     CDS             <1..594
                     /locus_tag="VF788_10960"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEX8934686.1"
                     /translation="GFARGFSIQTVSPLPIGWAEHVLADGHWGRALREYMRDYNHWAT
                     IGVLNELLPHPDNRVTLAEETDPYGQPVARLDYTLSDNDKANMAYSTQVITNILHAAE
                     AQDVLTIQRFAHLIGGARMGSSPQTSVVNANQRVWAVPNLFIADGSVCPTQGAANPAL
                     TIMTLASRLAQRMASGAAMDNDPVVRADHSRVTMASR"
     gene            631..2120
                     /locus_tag="VF788_10965"
                     /pseudo
     CDS             631..2120
                     /locus_tag="VF788_10965"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            2133..>2553
                     /locus_tag="VF788_10970"
     CDS             2133..>2553
                     /locus_tag="VF788_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase-like domain-containing protein"
                     /protein_id="HEX8934687.1"
                     /translation="MNITIPASAFEPHVLREYALLADGERGVLVGPQGDFAWMCAPRW
                     DSDAVFSSLIGGQGIYAVTPAERHVWGGYYEDGSLIWRSRWTTTSGIIECREALAFPG
                     DRHRAVILRRIIAVQGDARVHVLLEPSARFGRARMREL"
BASE COUNT          443 a          888 c          750 g          472 t
ORIGIN      
        1 ggtttcgccc gtggattctc cattcaaacc gtctccccgc tgcccatcgg ctgggccgaa
       61 cacgtgctag ccgacgggca ctggggccgg gccctgcgcg aatacatgcg cgactacaac
      121 cactgggcca ccatcggggt actcaacgag ctacttcccc atcccgacaa ccgggtcacc
      181 ctggccgagg aaaccgatcc ctacggccag cccgtcgcgc ggctggacta caccctttcc
      241 gacaacgaca aggccaacat ggcctactcc acccaggtga tcaccaacat cctgcacgcc
      301 gccgaggccc aggacgtgct caccatccaa cgcttcgccc acctgatcgg tggcgcccgg
      361 atgggcagct ccccgcagac ctccgtggtg aacgccaacc agcgcgtctg ggcagtgccc
      421 aacctgttca tcgccgacgg ctcggtctgc cccacccagg gcgccgccaa ccccgcgctg
      481 accatcatga cgctggcctc ccgactcgcc caacgaatgg ccagcggcgc cgccatggat
      541 aacgatcccg tggtcagggc tgaccacagc cgcgtgacga tggcgagccg gtgatgacca
      601 cctcaagccg gcaaccgggg agctgagccg atggcaccgt tcttccccct gtgggtggtg
      661 atcacccact tcctcaacat cgtgttcttg ctgttactgg cccgatccgg gttggaggtg
      721 ctctcggctt tccccaagct gtactggaac gatgactacc cacccggccg agagtgggcg
      781 caattttcga agaaaatgta tggtgcggac tcccgccgac tgtggacctc actggatgag
      841 gaagaggcct ggagcccagt cattgcgctg cccggccgga agaacctggg cctgagccgg
      901 cactggcact tcatgagcgt gcagttttgg atcctcaccg gagtggtcta tctcgcgctc
      961 gtgttcacct ccggctattg gctttatttg attcccaccc gctggtcact ggtccccgat
     1021 gcgatcaagg cagtgggcac ctacctacag ttccggctcc ccgagaatat ccccggccag
     1081 cccttcgaac cggctcagaa gttaacctac ttcctggtga tcttcctgct ggcgccgttc
     1141 caaatcgcga cgggggcggc ggtgtccccg tcggtgctgg cccgcttccc ccgctacggc
     1201 aagctcttcg gtggcaaaca gggcgcgcgg agcctgcact tcctcgggct gtgcgcgttc
     1261 gcggcgttca ccgcgctgca caccctcatg gtgatcatcc atggcgtgcc tgacgagctc
     1321 gccaagatcg tcctcggtga tccggagggc agccggcgat tagccctcgg cctcgggctg
     1381 accgggatct tcctcatcct gctgttccac atcatgatca gctggttctt gctgcgctac
     1441 cggcgctgta cccagcgcct gctcgggttc atggtcgacc ccttcgagcg ggtcatctcc
     1501 cgctgggcca cgtctaagca acatttccgg cacagtgata tctcgcccta tcaccgagtc
     1561 aatggttacc cgccaaccgg cgcggactac cagcagatgg ccgccgaggg ctttcaggac
     1621 tatcggctag acatcggcgg tctggtcgaa cacccggtgt ccctgacgct cgtgcagcta
     1681 cgcaacctcg gctggcagga ccagatcgtc aagcaccact gcatccaagg ctggagagcg
     1741 atcgcgcagt ggggcggtgt ccccttcacc gacctcctca ctctggtgca ccccaaaccc
     1801 gaagcccaac acgtcgtgtt ctacgcgatg gacgacaaag gcctcactga agggcaaggc
     1861 cgctgcgggt tctactacga ctcgatcccc tttgcgctgg cgagcacccc gcagaccatt
     1921 ttggcattgg aatgaacggc gccccgctgc cgatcgagca cggcgcccct atccggttgc
     1981 ggatcaagac ccagctcggt ttcaagatgg tgaaatggat taaagccatc gaattcgtca
     2041 ccgacactgc tcatatcgag atggtcatgg gtgggttccg cgaagaccag cagtactacg
     2101 ccaacgccgc cggaatctaa ggacccagac ccgtgaacat cacgattccc gcttccgcgt
     2161 tcgagccgca tgtgctgcgg gagtacgcgc tgctagccga cggcgagcgc ggcgttctgg
     2221 tcgggccgca gggggacttc gcgtggatgt gcgccccgcg gtgggactcc gacgcggtgt
     2281 tctcctccct gatcggcggt caagggatct atgcggtgac ccccgccgag cggcacgtct
     2341 ggggtggtta ctacgaagat ggcagcctca tctggcgctc ccgatggacc acgacttcag
     2401 gaatcatcga gtgccgcgag gcgctggcct tccccggtga ccgacaccgg gcggtcatcc
     2461 tccgccggat catcgccgtg caaggtgacg cccgggtcca tgtgctgctg gagccctccg
     2521 cccgcttcgg ccgcgcgcgg atgcgagagc tgc
//
LOCUS       DASVXZ010000528         3683 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_147049, whole genome shotgun sequence.
ACCESSION   DASVXZ010000528 DASVXZ010000000
VERSION     DASVXZ010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147049"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VF788_10975"
     CDS             complement(<1..227)
                     /locus_tag="VF788_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8934688.1"
                     /translation="MSATLHATGLAAGHGDRMLFSGLDLVVAAGDVVGLVGANGAGKS
                     TLLRVLAGQAIPQDGAVVLSPPDATVGHLPQ"
     gene            complement(241..1152)
                     /locus_tag="VF788_10980"
     CDS             complement(241..1152)
                     /locus_tag="VF788_10980"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010311019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX8934689.1"
                     /translation="MTAAPDLVDPAIGGRELDGPRPHPPGHQLAPGYVVIEHVRRGED
                     LDSYAAWSTQRYCRCFIKTLRPDVTTDASARRYLAREARLLLSLTHPHLVRAYEYVSP
                     DSGQPPLLVLENLTGATLSYLLNGGRERLGSADLGHLGQHLCSALRYLHSRDYLHLDV
                     KPSNIIASDGVGRLIDLSLARRPGRCAGGVGTPGYMSPEQITGGYLGPPADVWGVGLV
                     LYQAATGIQPFDLPDRSTSASSYTSTMVQCRSLLAHRAPKIRARRRLPTEVAEVIDAC
                     LHREPDQRPSLERLDKALSSLTAAPGG"
     gene            complement(1149..3008)
                     /locus_tag="VF788_10985"
     CDS             complement(1149..3008)
                     /locus_tag="VF788_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934690.1"
                     /translation="MTTQRDEQPDQAAGRGTTSGSVDPAPAAGIRMIFRSFWPATRPY
                     RGRLLISLLLVAVGPFLDTAQIWMFKLLIDDVLTPRDFGAFPAIAAAYLGIALAQGVI
                     AFSDEMLTTWLGERFVLDLRTRLFDHLHRLPVDFFDRRQLGDTLSRLTGDIDAIEALV
                     LSGVTRTLAYLFEIVLFTGALFYLNWQLALASLVAAPVFMLGARYFSARIKDASREQR
                     RRSGSVTAVAEESLGNVALVQAYDRHAAVTERFHRENVGRFTAEMAATRLRAVFGPLT
                     ELLEVAGVVLVMGVGVWALQHDQITLGGLLVFLTYLSRLYSPIRGAGRLSNTVYAASA
                     SAERIIDLLGRQPDIGDPAQPRSLRTARGRVVFHGVSFSYPDATRPALDALTFAIAPG
                     QTVAVVGASGAGKSTLGKLLMRFNDPDTGRITLDGYDLRDLPLASLRSNISAVLQETL
                     VFDGTVRENILWGKPDATEADLMAAAIAADAHEFITALPEGYHTRIGQRGRLLSGGQR
                     QRLAIARAMIRDAPVLLLDEPTTGLDAGSTQRVLAPMRRLMSGRTTLIISHNLLTVTD
                     ADQILFLRDGRITGAGTHHQLLATNADYAHLYRLHQEPRTPANAELRLQPELI"
BASE COUNT          665 a         1150 c         1281 g          587 t
ORIGIN      
        1 tcctgcggca ggtgcccgac ggtcgcatcg ggcgggctca gtaccacagc accgtcctgc
       61 gggatagcct gcccggccag cactcgcagc agcgtcgact taccggcgcc gttggctccg
      121 accaacccga cgacatcgcc agcggcaacg acgaggtcga gtccggagaa cagcatccga
      181 tcgccgtgtc cggcggccag tccggtggcg tgcaacgtcg cgctcatgtc agcgccgagg
      241 ttatccgccc ggcgcggcag tgaggctgga gagggccttg tcgagacgct ccaggctagg
      301 ccgctggtcg ggctcccggt gcaggcacgc gtcgatgacc tcagccacct cggtgggcaa
      361 ccgccgtcga gcgcggatct tgggtgcgcg atgggccagc aggctccggc attggaccat
      421 ggtggaggtg taggaactgg cggaggtgga gcggtcgggg agatcgaagg gctggatccc
      481 ggtggcagct tgatagagca ccaggccgac tccccagacg tctgcgggtg ggccgaggta
      541 accgccggtg atctgctcgg gcgacatgta gccgggtgtg ccgacaccgc cggcgcagcg
      601 gccggggcgg cgggccaggc tcaggtcgat cagacggccg acgccgtcgc tggcgatgat
      661 attgctgggc ttgacgtcga gatgcaggta gtcacggcta tgcaggtaac gcagggccga
      721 gcacaggtgc tggccgaggt ggcccaggtc cgcggaaccg aggcgctccc ggccaccgtt
      781 gaggagatag ctcaacgtgg cgccggtgag gttctccagg accagtaacg gtggctggcc
      841 tgagtcgggc gagacgtatt cataggcccg gaccaggtgc ggatgggtca aggacagcag
      901 caggcgcgct tcgcgcgcaa ggtagcggcg ggccgaggcg tcggtggtga catcgggccg
      961 tagcgtcttg atgaagcaac ggcagtagcg ttgagtgctc caggccgcgt agctgtccag
     1021 gtcctccccc cggcgcacgt gttcgatcac cacataaccg ggggcgagct ggtggcccgg
     1081 cggatgcggg cgagggccgt ccagctcccg gccgccgatg gcagggtcca cgagatcggg
     1141 cgcggcggtc atatcagctc cggctgcagt cgcaattcgg cattcgctgg tgtacgaggc
     1201 tcctggtgaa gccggtacag gtgggcgtag tcggcattgg tggcgagaag ctggtggtgg
     1261 gtgccggcac cggtgatccg cccgtcgcgc aggaacagga tctgatcggc gtcggtgacg
     1321 gtgagcaggt tgtgcgagat gatcagggtg gtacgcccgg acatcagccg gcgcatcggg
     1381 gccagaacgc gctgggtgga gccggcatcc aggccggtgg tgggctcatc gagaagtaac
     1441 accggtgcgt cgcggatcat ggcccgggcg atggcaagac gttggcgttg accgccggac
     1501 agtaacctgc cccgctgccc gatacgcgtg tggtatccct cgggcaatgc ggtgatgaac
     1561 tcgtgcgcat cggccgcaat ggcggcggcc atcaggtcgg cctcggttgc gtcgggtttg
     1621 ccccacaaga tgttctcgcg gacggtcccg tcgaagacca acgtctcctg cagaaccgcc
     1681 gagatgttgc tgcgcaggct ggccagtgga agatcgcgca ggtcgtaccc atccagggtg
     1741 atgcggccgg tgtccgggtc gttgaatcgc atcagcagtt tgcccagcgt ggacttgcca
     1801 gccccgctag cgccgaccac cgcaaccgtc tggcccggag cgatcgcgaa ggtgagcgca
     1861 tcgagggcgg gccgagtggc atcggggtag ctgaagctca ccccgtggaa gaccaccctg
     1921 cctctggcag tgcgcaagct gcgcggctga gctggatcgc cgatatcggg ttgtcgaccc
     1981 agtaagtcga tgatgcgttc agcgctggca ctggccgcgt acaccgtgtt ggacagccga
     2041 ccggcccccc ggatggggct gtaaagccgg ctgaggtagg tcagaaacac cagcaacccc
     2101 ccgagggtga tctgatcgtg ctgcagcgcc cacaccccca ctcccatcac cagaaccaca
     2161 ccggcgactt ccagcagctc ggtcaacggc ccgaagacgg cccgcaaccg ggtagcggcc
     2221 atttcggcgg tgaaccggcc gacattctcc cgatgaaacc gctcggtgac ggcggcatgg
     2281 cggtcgtaag cctgcaccag cgccacattg cccaggctct cctcggcaac cgcggtaacg
     2341 gaacctgaac gccgtcgctg ctcccgggag gcatccttga ttcgcgccga gaagtacctc
     2401 gcgcccagca tgaacaccgg cgcggcgacc agggacgcca acgcgagctg ccagttcagg
     2461 tagaacagcg cgccggtgaa cagcacgatc tcgaacaggt aagcgagcgt acgggtcact
     2521 ccggagagca ccagcgcctc gatcgcatcg atatcaccgg tcagccggga cagggtgtcc
     2581 cccaactggc ggcgatcgaa gaagtccacc ggtagccggt gcaggtgatc gaacaaccgg
     2641 gtgcgcagat ccagcacgaa ccgctcgccc agccaggtcg tcaacatctc atccgagaac
     2701 gcgatgaccc cttgagccag cgctatcccg agataggcgg ccgcgattgc ggggaaggca
     2761 ccgaaatccc gcggggtcag cacgtcgtcg atcagcagct tgaacatcca gatctgcgcg
     2821 gtgtcgagga acggtcccac cgcgacgagc agcaagctga tcagcaggcg accgcgatac
     2881 ggccgggttg cgggccagaa tgatcgaaag atcatccgga tgccggctgc gggagcggga
     2941 tccaccgatc cgctggtggt tccgcggcca gccgcctgat ccggctgttc atcccgctgt
     3001 gtggtcacgg cagccagtcc tcactattgc agagacaggg gccttacccc agcatcccga
     3061 ggtgaggccc ctgtcgtcag gtggtgctgc taccgctcag tggccgtagt gacggcggtg
     3121 actgcggtgg ctgcgacggt ggctgcgccg gcggctgtgg tgacggctgc ggtcgcaatg
     3181 atcgccccgg tacccgctct gtgcgtgttc gaacgacttg aagtagccag tcacggtttc
     3241 atctcccgtt catctcagtg atggtcatct gcaaccatct gtacttctgc gtatccgata
     3301 ggtacccctc ggacgttaca cacgattacc agaaagttac gatgggtgag gagaatatgc
     3361 cttcacgctg cgtcatctcc acgggatggc cggcagctgg agtgcctagg cagcagagtg
     3421 cgggagagaa tcagacgtgc gaaggccgtg ttgatgtggg cagacaccgt ggatgatcgt
     3481 gcacaatggc gacgtggtgc gctctgcggc atgccgaccg cgctgctcaa ctgaggcccc
     3541 cgaccaccac caatgaggag cgatggccga ccacgaaccc accatgggcg gcggatgcca
     3601 ggatcctgag ctgtcccagg aacttcggga tgcgctcacc ctgctgcatg accacagtga
     3661 cgacgacgcc ttccgcacgc tga
//
LOCUS       DASVXZ010000529         4751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_504931, whole genome shotgun sequence.
ACCESSION   DASVXZ010000529 DASVXZ010000000
VERSION     DASVXZ010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4751
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504931"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VF788_10990"
     CDS             complement(<1..626)
                     /locus_tag="VF788_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8934691.1"
                     /translation="MTALTTSPAIRGTGIRHCFGNTVAVDGVDFDVAAGTVFGLLGPN
                     GAGKTTTMRMITTLLPAPAGTIEIFGVDVARHKLAVRRLIGYVPQQLSADGALSGREN
                     VTLFARLFDVPRTRRRRVVDAALESVGLSDVAERTARTYSGGMIRRLELAQALVNAPQ
                     LLMLDEPTIGLDPIARASVWHRILEVRANTGMTVLVTTHHMDEADQYC"
     gene            complement(623..1084)
                     /locus_tag="VF788_10995"
     CDS             complement(623..1084)
                     /locus_tag="VF788_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8934692.1"
                     /translation="MARLESAVLGDELMATVTALRRLVRRRLRQVMPGPPLRGAQLEL
                     LGVIEQRPGIGIAPAAHVLHLAANSVSTLVDQLIDLGMLVRDVDPNDRRAARLWLTES
                     ATQRLAAGRQARRELMAGVVADLSVTEREALTQALPALRALITALDSTEGR"
     gene            complement(1793..3139)
                     /gene="efeB"
                     /locus_tag="VF788_11000"
     CDS             complement(1793..3139)
                     /gene="efeB"
                     /locus_tag="VF788_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HEX8934693.1"
                     /translation="MTPDAPTQTSTSAPSRDNDTTHTQRKLSRRSVVGLLGAGALAGA
                     GAATTVTTSTQRDQASAGGVPTAAGVVPFYGVHQAGIITPVQDRLHFATFDLAPAATR
                     SDLVALLKSWTAAAVSMSRGTDIGPGGAVNGALQKPPSDTGEAQELPASRLTITIGFG
                     TTLFQADDGRDRFGLAVRRPPQLADLPAFPGDALITERSGGDLCIQACANDPQVAVHA
                     IRNLARIARGTAVVRYSQLGFGRTSSTSTSQQTARNLMGFKDGTNNIKAEDSTAVDRF
                     VWAQRGDGADWMIGGSYLVSRRIRMLIETWDSTPLAEQQRVIGRAKATGAPLGATTEF
                     DPLDLTVTDAAGTPLIDLDAHVRLAHSSTNSGAQLLRRGYNFVDGTDSLGRLDAGLFF
                     LAYQRDPRTQFVTINTHLAGNQNDALNEYIQHVGSGLFACPPGIQPGQYLGHTLLE"
     gene            complement(3136..4683)
                     /gene="efeO"
                     /locus_tag="VF788_11005"
     CDS             complement(3136..4683)
                     /gene="efeO"
                     /locus_tag="VF788_11005"
                     /inference="COORDINATES: protein motif:HMM:NF041757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HEX8934694.1"
                     /translation="MPVGTGEFWVRHLPDTRTQRDLRPSRWLFRNRQLETHEGAERVG
                     TAAPAGPLATCCSRAPTRSTSPPSVFNNEASLAYHPFEAILRRIRPEVLLMVRNSHGP
                     HPFGSASWFESDRFRRTSRPDRQSTMVKALQATASVVVIFVVVIFAAAACSTPPTNGS
                     PSGPVTVKAGDTTCEVSATSLDSGRHTFSVENTAGKVSEVYVYGAGDQVIGEVENIGP
                     AATRDLVVDLPAGKYQVACKPGMVGSGIRTALTVNGPSVAAGPLDARLQAGVASYRNY
                     VETEAQALVDTTSAFVAAVKAGNLNQAKSLYPAARTHYERIEPIAEAFGDLDPLIDMR
                     IDDATSTNPFVGFHKLEQDLWETKNISASGQAADALEANVRKLQSQIPTLEITPVTMG
                     NGAKELLDEVAKSKVTGEEERYSHIDLVDFEANVEGSRSAYTSLRPVLAQRNPTLVST
                     LDTRFDTLLSLLSTHFSHQDNAGYIAGTPFVSYTVLTPAEIKALSDEVTNISEPLGQI
                     SGELANK"
BASE COUNT          795 a         1401 c         1606 g          949 t
ORIGIN      
        1 tcgcagtact ggtcggcctc gtccatgtgg tgcgtcgtga ccaggacggt catcccggtg
       61 ttcgcgcgaa cctcgagaat tcgatgccac acactggctc gggcgatcgg gtccaggccg
      121 atcgtcggct cgtccagcat caacagttgt ggcgcgttca ccagggcctg ggctagttcc
      181 agccgtcgga tcatgccacc ggagtaagta cgtgcggtgc gttcggcgac atcagacaac
      241 ccaaccgact ccagcgcggc atcaacgacc cgtcgccgcc gggtccgcgg tacgtcgaat
      301 aggcgcgcaa atagtgtcac gttctcccgg ccactgagcg ccccgtcagc ggaaagctgc
      361 tgcggtacat agccgatcaa tcgtcgaacg gcgagcttgt gccgggccac gtctaccccg
      421 aagatctcaa tcgtcccggc cggtgctggt agcagcgtcg tgatcatgcg catcgtggtg
      481 gtcttgccgg cgccgttggg cccgagcaaa ccgaacaccg tcccggcggc gacgtcgaag
      541 tcaaccccgt cgactgcaac cgtgttaccg aagcagtgcc ggatcccagt accccgtatg
      601 gcaggcgacg tggtcagcgc ggtcatcgtc cctccgtaga gtcaagggcg gtgatcagtg
      661 cgcgcaacgc gggcagcgct tgggtaagcg cctcgcgctc ggtgacggaa aggtccgcca
      721 caacccccgc catgagttcc ctgcgcgctt gacgccccgc cgccaatcgc tgcgtcgcag
      781 actcggtcaa ccacaaccgg gcagcgcggc gatcattggg atcgacatct cgcaccagca
      841 tccccaagtc gatgagctgg tccactaacg tgctcaccga gttggccgcc aagtgcagga
      901 catgtgcggc tggtgcgatc ccgatacctg gccgctgctc gatcactccc agcagctcca
      961 gttgcgcgcc tcgtaacggt ggtcccggca tcacctgccg taaccgccga cgcaccaggc
     1021 gtcgcagcgc ggtgacggtc gccatcagct catcgcccag cacagctgac tcgaggcgcg
     1081 ccatgccccg aaggtacatc gtagtaagag ataatcgcaa taaaaggtaa ctgtgctgac
     1141 ttgactactg ttcgtgatcg actgccccgt gtgcgccaag agagctcctc gcgctcaggc
     1201 tagggttgca ccttcccggc cacgccctac cgccgtcgcc tgagcggccg cgagcgtgtg
     1261 acgatgccga ccgggtcgtc ggattcctgg cagcaaccac cagcacgtcg agtccgaggc
     1321 cgccatcggc gaacggatcg gcatgctcgg ccagcactgc gacctcggtg atcgtgatgg
     1381 gtccatcggc gaccgcgacc gccctgtcca gggcttaccg tgatcttggg gacgctatct
     1441 tccagtcaag tagacattcg ggatcccagc tagatactcg gaggagaccg ccgggtccgt
     1501 cgtccactcg gcggcactgt gccgcagcag cagatcccga ttcggagtca ctgacccaag
     1561 agctgagagc tgcttcgtct caaccggagg accagctaga gcctttgtag caatcgtcgg
     1621 cctgctggcg tctgaagtgg ctccgtgggc gcagcggacc gccatagatt ttaggtttcg
     1681 gcgagactac gggtactgcc gtaggactct taagtcgggt gatgcactgg ggtcttcagt
     1741 tcggaagcgt ccaacgttct catcgactag ataatatcgg actgaggcga ggtcattcca
     1801 ggagtgtgtg gccgaggtat tggcctggtt ggattccggg tgggcaggcg aacagtccgc
     1861 ttcctacgtg ttggatgtac tcgttgagtg cgtcgttctg gttgccggcg aggtgggtgt
     1921 tgatggtgac gaactgggtg cggggatcgc gctggtaggc gaggaagaac aggcctgcgt
     1981 cgagtcggcc gagggagtcg gtgccgtcga cgaagttgta gccacggcgc agcagttggg
     2041 caccgctgtt ggtggatgag tgtgctaggc gcacgtgagc gtccagatcg atgagtggtg
     2101 tgcccgcggc gtcagtgacg gtgaggtcga gtgggtcgaa ttcggtggtc gcacctagtg
     2161 gtgcgccagt ggctttggct cggccgatga cgcgttgctg ctcggcgagt ggggtggagt
     2221 cccacgtttc gatcagcatg cggatacgtc ggctgacgag atagctgcca ccgatcatcc
     2281 agtcggcgcc gtcgccgcgt tgtgcccaga cgaagcgatc gacggcggtg ctgtcttcgg
     2341 ctttgatgtt gttggtgccg tctttgaagc ccatcaggtt gcgggcggtt tgctggctgg
     2401 tgctggtgct gctggtacgg ccgaagccca gttgtgagta gcgcaccacg gctgtgccgc
     2461 gggcgatccg ggccaggttg cggatggcgt gtacggctac ctgtgggtca ttcgcgcagg
     2521 cctggatgca caggtcacct ccggagcgct cggtgatcag agcgtcaccg ggaaatgcgg
     2581 gtagatcggc tagttgcggg ggccgcctga cggccaggcc gaagcggtcg cggccgtcat
     2641 cagcctggaa cagggtggtg ccaaaaccga tggtgatggt caatcgcgag gcgggtaatt
     2701 cttgtgcttc gccggtgtca gagggtggtt tctgtagtgc accgttgact gctccacccg
     2761 gtccgatatc ggttccgcgg ctcatcgaga ccgctgctgc ggtccaggat ttcaggaggg
     2821 cgaccaggtc gctgcgagtg gcggccgggg cgagatcgaa tgtggcgaaa tgcaggcggt
     2881 cctgtaccgg ggtaatgatt ccggcttgat gcacgccgta gaacggtacg acgccggctg
     2941 cggtggggac cccaccggcg cttgcctggt cgcgctgggt gctggtggtg acggtggtgg
     3001 ctgcgccagc gccagcgagt gcgccggcgc ccagcagccc aacgactgat cggcgggata
     3061 acttgcgttg ggtgtgggtg gtgtcgttgt ctctggaggg cgccgacgtg gaggtctggg
     3121 tgggtgcgtc gggggtcact tgttcgccaa ctccccactg atctggccca gtggttcgct
     3181 gatgttggtg acctcgtcgg acagtgcctt gatctcggcc ggggtgagga cggtgtagga
     3241 gacgaagggt gtgcctgcga tgtagccagc gttgtcttga tgcgagaagt gggtgctgag
     3301 caggctcagc agcgtgtcga agcgcgtgtc gagggtggac accaaggtgg ggtttcgctg
     3361 ggcgagcacc ggtcgcaatg aggtgtaggc ggatcgggaa ccttccacgt tggcctcgaa
     3421 gtcgaccagg tcgatgtgtg agtaacgctc ctcctctccg gtgactttgc tctttgcgac
     3481 ctcatcgagc agctccttcg cgccattgcc catggtgacc ggggtgatct ccaacgtcgg
     3541 aatctgagac tgcagttttc tgacattcgc ctcgagcgca tcggctgcct ggccgctagc
     3601 gctgatgttc ttggtctccc acaggtcctg ctcgagtttg tggaagccga cgaacgggtt
     3661 cgtactggtg gcgtcgtcga tgcgcatgtc gatcagtgga tcgagatcgc cgaaggcctc
     3721 cgcgatgggt tcgatgcgct cgtagtgggt gcgcgccgcg gggtagagcg acttcgcctg
     3781 gtttaggttg cccgctttca ccgcagcgac gaacgccgat gtggtgtcga ccaacgcctg
     3841 cgcctcggtc tccacatagt tgcggtacga agcgacacca gcctgtagcc gcgcgtcgag
     3901 cggtccggca gcaacactgg gaccgttgac ggtcaacgcg gtgcgaattc ccgagccgac
     3961 catgcccggc ttgcacgcta cctggtactt cccggccgga agatcaacga ccagatcccg
     4021 ggtagcggcc gggcctatat tctccacctc gccgataacc tgatcaccgg caccgtaaac
     4081 ataaacttcg ctcaccttgc ctgcggtgtt ctcaacgctg aaagtatgcc gcccgctgtc
     4141 cagggatgtc gctgaaacct cgcatgtcgt atcccccgcc ttgaccgtca cggggcccga
     4201 ggggctgccg ttggtcggag gggtggagca ggctgcagct gcaaagatca ctactacaaa
     4261 gatcactact acgctggctg tggcctgtag cgccttgacc atggtcgact gtcgatcagg
     4321 tctactggtt cgacggaacc gatccgactc gaaccacgat gcgctcccaa acgggtgagg
     4381 accgtgactg tttctgacca tcagtagcac ctccggtcgt atccttctga ggatagcctc
     4441 aaatgggtga taggcaaggc ttgcttcatt gttgaacacg ctgggcggcg aggtgctgcg
     4501 ggtgggggcg cgtgagcagc atgtggccaa ggggcctgcg ggggcggcgg tgccgactcg
     4561 ttctgctcct tcgtgcgtct caagctgtcg gttccggaag agccagcggg acggtctgag
     4621 gtcgcgctgc gtcctggtgt cgggcaggtg tcgcacccag aactcaccgg tgccgaccgg
     4681 catggagtgc gaacggctcg ttccacgctg aaccgcgtcc ctcgatcgag tgcatttgca
     4741 cgtgcattta a
//
LOCUS       DASVXZ010000530         1739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_566531, whole genome shotgun sequence.
ACCESSION   DASVXZ010000530 DASVXZ010000000
VERSION     DASVXZ010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566531"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..888)
                     /locus_tag="VF788_11010"
     CDS             complement(<1..888)
                     /locus_tag="VF788_11010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8934695.1"
                     /translation="MNSVTEVVVVGAGPTGLMLAGDLARAGVGCTVLERRAEETNLTR
                     AFAVHARTLELLDARGLADDLVATGVRVGALRLFGQLEVDLSRLPTRFPYVLVTPQYH
                     TERVLEEHASALGANIVRGADVVDLRQDTDGVELDVRLEDGSLGTRRAMYAIGTDGVR
                     STVRQALALPFPGHSAIQSVMLADVQLSEAPEEVLTVNATGDGFIFLAPFGDGWYRVI
                     AWDRRRELPDDAPVELEEIREITQRVLGTDYGMHDPRWMSRFHSDERQVTHYRVGRVF
                     LAGDAAHVHSPAGGQGMNTG"
BASE COUNT          309 a          582 c          524 g          324 t
ORIGIN      
        1 gccggtattc atgccctgac ctccggctgg agagtgaacg tgtgcggcgt cgccagcaag
       61 gaacactcgc ccgacccggt agtgtgtgac ttggcgctcg tcgctgtgga accgggacat
      121 ccagcggggg tcgtgcatgc cgtagtcggt gcccagcacg cgctgggtga tctcgcggat
      181 ctcctccagc tctaccggcg catcgtcggg cagttcccgg cgccggtccc aggcgatgac
      241 ccgataccaa ccgtcgccga acggggcaag gaatataaag ccgtcaccag tcgcgttgac
      301 ggtcagcact tcctccggag cctcgctgag ttgcacgtcg gccagcatca ccgactgtat
      361 ggcggagtga cccgggaacg gcagggcgag ggcctggcgc accgtgctgc gcaccccatc
      421 ggtgccgatg gcgtacatcg cccgccgcgt gcccaagctc ccgtcctcaa gccgcacatc
      481 cagctcgaca ccatcggtgt cctggcgcag atcgaccaca tccgcaccac gcacgatatt
      541 ggccccgagc gcactggcat gctcctcgag cacccgttcg gtgtggtact gtggggtcac
      601 cagcacatac ggaaatcggg tgggcagccg ggagaggtcc acctcgagct ggccgaataa
      661 ccgtagtgca ccaacccgga cgccggtggc caccaggtcg tcggcgaggc cccgcgcgtc
      721 gagcaactcg agtgttcggg cgtgcacggc gaacgctcgg gtcaggttgg tctcctcggc
      781 acggcgctcg agtaccgtac agccgacgcc ggctctggca aggtcgccgg ctagcatcaa
      841 gccagtcgga cctgccccca caaccaccac ctcggtgacc gaattcatca aactactcct
      901 ttctaggcaa aggcctcgat cagtctcact taagcagcaa gatcctcgac cgaaaagccc
      961 tcttgttcga tcaggggctt ccccctgaca acgctgctag ggaaccgggt tgccgcgatg
     1021 ttcagggcct gctgggtggt gtgagcctgc accgctgctg cgaagcgtgc cgttccggag
     1081 cgtacctcga ttgagatttt tgccatttgg atcacctctt tttctcgtca cctttgctcg
     1141 cgttgttctc gtcccatctc tccagttcct ctgaccactc ctacaggaag ccgaccgttg
     1201 ctcgtggcaa ggcgagcttg gctgccagcg cggtgacccc tgtagtagtt gagcctgtcg
     1261 gatggcgcgg aatgccttac caaattaagg ttctcggtga agcattcagt ctctccaaag
     1321 cggccgtcga tccggccgca ccagtaggcc tggccgcggt actcggaggt tagctctctg
     1381 gaagcttcga ggggccacac ctccaagccg caggcaggac agtggaacac cccgtctggc
     1441 aaacggcgca tctcaggatg accgcactcg caggtgtgat ccccgatggc gtcaggtagg
     1501 acgactatct gctcgacggt cctgaggata gccttgtcca ggtcgcggcc gcggcagctg
     1561 caaccggcca aaccggcccc tcgaacccgc agctccctgg agccgcacgc cgggcagacg
     1621 atatggcctg gcttgcatgt cgtacgcgac ggtactctca ttctcgcctc ctttgatgat
     1681 cgtaggctct tgctaatcga acccacggta ccgccccagc gtcacagggg cgtaacggt
//
LOCUS       DASVXZ010000531         3780 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1463119, whole genome shotgun sequence.
ACCESSION   DASVXZ010000531 DASVXZ010000000
VERSION     DASVXZ010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1463119"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..719)
                     /locus_tag="VF788_11015"
     CDS             complement(<1..719)
                     /locus_tag="VF788_11015"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016330582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HEX8934696.1"
                     /translation="MDVKELTSRLPLPGTQRERGPVVAAVKLHGLIMPGPAPLGRGVI
                     NLATVETVLTRAFGYDRLRAVALSINSPGGMPTQSALVADRIRGLAESKRVPVLAFCE
                     DIAASGGYWLACAADEIIAHPTSLVGSIGVVSRGFGWHGLLERLGVERRLYAAGTNKA
                     RLDPFLPEEPEDVEWLRGMQVELHSMFRDWVCSRRGGVLATDQQDLFTGEVWTGQRAQ
                     ELGLVDGLGTLRGEIAKRYPDA"
     gene            complement(849..2099)
                     /locus_tag="VF788_11020"
     CDS             complement(849..2099)
                     /locus_tag="VF788_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX8934697.1"
                     /translation="MTLLGNPGVIAALALLIAVALAAGLLYWVRSRREFGTDADRAIY
                     NALLTMAQASPPLRDGLLASSATAAAPHLRALLNCTAVALTNDESVMLAWDGEAQHHA
                     EWVNEAALEALSTGRQQVRSQREMDCGRADCPIRAVIVSPLEVDGGVVGTFGVVSERP
                     AAAGVMRATAEVARYVSSQLELAELDESRSRLAHAEVRALRAQISPHFIYNALTTISS
                     CVRTDPEEARELLMEFAEFTRYSFRATGEFTTLAEELNNIDRYLILEKARFGDRLQVK
                     LQIAPEVLPVVLPFLALQPLVENAVRHGLAGKPGGGTVSVVAENSGSDCVISVEDDGI
                     GMDPDRLRDEMTDSHVTGAHVGLGNVHDRLRGAFGDECGLVVETAPGAGTKVSMKVPK
                     FSRGVRAIAPPTPSPSRTQPPVSA"
     gene            complement(2180..2578)
                     /locus_tag="VF788_11025"
     CDS             complement(2180..2578)
                     /locus_tag="VF788_11025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934698.1"
                     /translation="MGTTWTVELRSVDHAAQGRPAEWICSGVPTQQPAPEHQTADLLG
                     QRGLLLFPVDPVDPLDAAESPPRIRSRRLIGYVTRDPELMRLAKMLTDVAHADREHPM
                     VVAARWVRRGYSADAAARRIIAGAGPGPRR"
     gene            complement(2795..3658)
                     /locus_tag="VF788_11030"
     CDS             complement(2795..3658)
                     /locus_tag="VF788_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007030514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEX8934699.1"
                     /translation="MPELPEVEALAHHLREYAVGTIVTRVDVASLTVLKTVQPAVSAL
                     HGCTVTGAGRRGKFLAVYTSGPALVVHLARAGWLRWSDSLASAAPRPGKGPIALRVHL
                     SGRAGFDLTEAGTQKRLAVYIVADAAGVAELPGIRRLGPDALALSRAELGEVLRGRTE
                     RLKTMLTDQTMIAGMGNAYSDEVLHAARLSPYASAGRLPEDALDRLHDALRRVLLDAV
                     ARSVGQDAARLKGEKRAGLAVHARAGLPCPVCGDTVREVSFADRAFQYCPTCQTGGKP
                     LADRRLSRLVR"
BASE COUNT          641 a         1375 c         1221 g          543 t
ORIGIN      
        1 gcatcggggt aacgcttggc gatctccccg cgcagtgtgc ccagcccgtc gaccaggccc
       61 agctcctgtg cccgctggcc ggtccacacc tcgccggtga acaggtcctg ctgatcagtg
      121 gccagcacac cgccgcgtcg cgagcacacc cagtcgcgga acatgctgtg caattcgacc
      181 tgcataccgc gcagccactc cacgtcctcc ggttcctcgg gcaggaacgg gtcgagccgg
      241 gccttgttcg tccccgcggc gtacagccgc cgctcaacgc ccaagcgctc cagcaaaccg
      301 tgccacccga aaccccggct gaccaccccg atggacccca ccagcgaggt ggggtgagcg
      361 atgatctcat cggcggcgca ggccagccag taaccaccgg atgcagcgat gtcctcgcaa
      421 aacgccagca ccggcacccg cttgctctcg gcgaggccgc ggatccgatc ggccaccagc
      481 gctgactggg tgggcatacc gcccggcgaa ttgatcgaca acgccaccgc ccgcagccgg
      541 tcgtaaccga acgcgcgggt cagcaccgtc tccacggtgg ccaggttgat cactccgcga
      601 cccagcggcg cgggtcccgg catgatcagg ccgtgcagct ttaccgccgc cacaaccggg
      661 ccgcgctccc gctgggtgcc gggcaacggc agccgcgagg tcagctcctt gacatccatc
      721 gggccagcct acggccgcgc gacgagctgg atcaggcctg gtccgctacc cgagcccacc
      781 cgtgagtggc aatccgtgcc acagccacga ttctcactca cgggtcagcc gccgaaggcg
      841 gccacccgct aagcgctcac tggtggttgc gtacgcgatg ggctaggcgt cggcggggcg
      901 atggcgcgca cgccgcggct gaacttgggc accttcatac tgaccttggt gcccgcgcca
      961 ggtgcggtct cgaccaccag accgcactcg tcaccgaagg ctccgcgcag ccggtcgtgc
     1021 acgttgccca gcccgacgtg cgcgccggtg acgtgcgagt cggtcatctc atcgcgcagc
     1081 cggtccggat ccatcccgat accgtcgtcc tccacgctga tcacgcaatc ggacccggag
     1141 ttctcggcta cgaccgacac cgtgccgccg ccgggcttgc cggccagccc gtgccgaacg
     1201 gcgttttcta ccagcggctg cagcgccaag aacggcaaca ccaccgggag gacctcgggc
     1261 gcgatctgta gcttcacctg caaccggtcg ccgaatcgtg ccttctccag aattaggtac
     1321 cggtcgatgt tgttgagttc ctctgccagc gtggtgaact cgcccgtcgc gcggaaggag
     1381 taccgggtga actcggcaaa ctccatgagc agctcacggg cctcctccgg atcggtacgc
     1441 acgcaggagg agatggtggt gagcgcgttg tagatgaagt gtggcgagat ctgcgcgcgc
     1501 agcgcccgca cctcggcatg ggccagccgg gatcgggact cgtcgagctc ggcgagttca
     1561 agctggctgg agacgtagcg ggccacctca gccgtagccc gcatcacacc ggcggccgcg
     1621 ggccgctcgc tgaccacccc gaaagtcccg accaccccgc cgtccacctc caacggggag
     1681 acgatcaccg cacggatcgg gcagtcggcg cgcccgcagt ccatctcacg ctggctgcga
     1741 acctgctgac gaccggtgct cagcgcctcc agggcggcct cgttaaccca ttcggcatgg
     1801 tgctgagcct cgccgtccca ggccagcatg acgctttcat cattggtcaa cgcgacggcc
     1861 gtgcagttca gcaatgcccg caggtgcggc gccgcagcgg tcgccgacga agccaacagc
     1921 ccatcccgaa gcggcgggga agcctgcgcc atggtgagca gcgcgttgta gatggcgcgg
     1981 tcggcatcgg tgccgaactc ccgccggcta cggacccagt acagcaaccc ggcagcgagt
     2041 gcgacagcga tcaaaagagc cagcgccgcg ataactccag ggttgccgag cagagtcacg
     2101 actccatagt cgcggtccag actgcagctg acaacggcgg ctcgccgttc gtcctggcag
     2161 cgaccgccac cggcggcgcc taccgccgtg ggccaggccc cgcaccagcg atgatccggc
     2221 gggccgctgc gtcggccgag tatccgcgtc gaacccaccg ggcagcgacg accatcgggt
     2281 gctcgcgatc ggcgtgcgca acgtcagtga gcatcttcgc caaccgcatg agctcgggat
     2341 cccgggtgac gtagccgatc agccgacggc tgcggattcg cggcggggat tcggccgcat
     2401 cgagcggatc gacgggatcg accgggaaca gcagcaggcc acgctgaccg agcaggtcag
     2461 cggtctggtg ttctggcgcc ggttgctgag tcggtacgcc agaacagatc cactccgctg
     2521 gccgaccctg cgctgcatgg tccacggatc gcagctccac cgtccaggtc gttcccaccg
     2581 agcagcacca ggaggcggcg aacacatcag cagcgggggg agaccccgca aggaccctct
     2641 cgtgaagcgg cagccgttcg ggtgcgcggg gggcggggcg atggggaggt gcgatccgga
     2701 acacagcgct agcgaaccct ccagcggccg ggggcgccac cgcgacaggg gtgaatctat
     2761 tcaccttcac tccgatggcg tcaccgctgc gatatcagcg aaccagccga gacagcctgc
     2821 ggtcagccag tggctttccc ccggtctggc acgtcgggca gtactggaaa gcgcggtcgg
     2881 cgaaggacac ttcgcggacc gtgtcgccgc agaccgggca cggcagacca gcgcgggcgt
     2941 gcaccgccag accggcccgt ttctcacctt tgagccgggc agcgtcctgc ccgaccgacc
     3001 gggctaccgc gtcgagcagc acccgcctga gggcatcgtg caaccgatcc agcgcgtcct
     3061 ccggtagccg ccccgcagag gcgtaaggcg acagccgggc ggcgtgcagg acctcgtcgg
     3121 agtatgcatt gcccatcccg gcgatcatcg tctggtcggt cagcatcgtc ttgagccgct
     3181 ccgtgcgccc acgcagcacc tcaccgagct ccgcacggga cagcgccagg gcgtctggac
     3241 ctagccggcg gatgccgggc aattcagcca cgccggcggc gtcagcgacg atatacaccg
     3301 cgagtcgctt ctgggtgccc gcctcggtga gatcgaaccc tgctctccca ctcaggtgca
     3361 cccgcagcgc gatcggtccc ttgccgggac gcggcgcagc ggatgccaac gagtcggacc
     3421 agcgcagcca tcccgcgcgc gccaggtgca ccaccaacgc aggaccgctg gtgtacaccg
     3481 caaggaactt gccgcgcctg cccgccccgg tcaccgtgca gccatgcagc gcgctcaccg
     3541 ctggctgcac cgtcttgagc accgtgaggg aagcgacgtc gacgcgggtc acgatcgtgc
     3601 cgacggcgta ctcgcgcaga tgatgcgcca gcgcctcgac ttccggcagc tcaggcatgc
     3661 actctagtgt gcgctcacct tctggttggc gtcacgaatc ccggccgacc ggcaacaccc
     3721 gcatgagcgg cccgttgaca acgtcaggtt cccctttgtc ttccaggtcc tccgcgatcc
//
LOCUS       DASVXZ010000532         1787 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_326440, whole genome shotgun sequence.
ACCESSION   DASVXZ010000532 DASVXZ010000000
VERSION     DASVXZ010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326440"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VF788_11035"
     CDS             <1..252
                     /locus_tag="VF788_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEX8934700.1"
                     /translation="VNAPGTIDAGYRGELRVCLVNHDLHEPVVLHRMDRIAQLVVQRV
                     EGAVFREVTALPESSRGASGYGSTGTTVFTAPSGAGSHS"
     gene            268..951
                     /locus_tag="VF788_11040"
     CDS             268..951
                     /locus_tag="VF788_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020495084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3710 domain-containing protein"
                     /protein_id="HEX8934701.1"
                     /translation="MFGRRHRTPAIGQPSLSDEDTEIPAVPERRALGPYDVEVEPDDG
                     WIRLDLGSLRLPVPEGAQLQVEVDTSGPVRAVHLMTGVGQITLTAFAAPRSGGLWHEV
                     VPELVTKLRSDGAQVGSAAGEWGEEVEAVTGQGVLRFLGVDGPRWMLRGVAGGPAEDA
                     QPRVALLRDVVRQTVVVRGSEPLPPRSPLPLRLPGSLGEQLKQATTELVNAAAEGGPS
                     SGPDTGARG"
     gene            1066..1443
                     /locus_tag="VF788_11045"
     CDS             1066..1443
                     /locus_tag="VF788_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEX8934702.1"
                     /translation="MSGANPGYWRRLVRQLTSDATELDAEDLCRRVEQSDARRASDCS
                     CGQAVTVLGRLRSVEHCPRAAVATLEAELFDGSEAVTLVWLGRRRIPGIEPGRTVKAS
                     GRLAVRDGHKVLYNPYYELQRSS"
     gene            1506..>1787
                     /locus_tag="VF788_11050"
     CDS             1506..>1787
                     /locus_tag="VF788_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003074941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3159 domain-containing protein"
                     /protein_id="HEX8934703.1"
                     /translation="MALTEQRTPTLLKQLGGVWGLVASVVPVVVFVAVNPLAGLPPAI
                     WASLGVALALGVWRLVRREVLQPAVSGILGVAVCAFIAYRTGEARGFFLY"
BASE COUNT          271 a          546 c          653 g          317 t
ORIGIN      
        1 gtcaacgcac cgggcaccat cgacgccgga taccgcggcg agctgcgggt gtgtctggtc
       61 aaccatgatc tccacgagcc cgtggtgctg caccggatgg atcgcatcgc ccaactggtc
      121 gtgcagcggg tcgaaggtgc cgtgtttcgt gaggtgaccg cgctaccgga gtcctcccgc
      181 ggagccagcg gttacggctc aacgggaacg acagtgttca ctgcacccag cggggcggga
      241 tcacatagtt agggagagtg ttgagcagtg ttcggacgtc gccacaggac cccggccatc
      301 gggcagccat cgctttccga tgaggacacc gagatccccg ccgtcccaga acggagggca
      361 ttgggcccct acgacgttga ggtagaaccc gatgacggct ggatcaggtt ggatctcggc
      421 tcactgcggc tgccggtgcc cgagggtgcg caacttcagg ttgaggtgga cacctccgga
      481 ccggtgcgtg ccgtgcatct gatgaccggc gttggtcaga tcacgctcac cgcttttgct
      541 gccccgcgca gcggcgggtt gtggcacgaa gtcgtccccg aactggtgac caagttgcga
      601 tctgacggtg cacaggtcgg ttcggcggct ggcgagtggg gtgaggaggt cgaggccgtc
      661 accggtcagg gggtgctgcg gttcctcgga gtggatgggc ctcggtggat gctccgggga
      721 gttgcgggcg gccctgcgga ggatgcgcag ccgcgcgtgg ccctgttgcg tgacgtcgtc
      781 aggcagaccg tggtagtgcg gggttcggag ccgctgcccc cgcgcagccc actgccactg
      841 cggttaccag ggtcgctggg ggagcagctc aagcaggcca ctaccgagct ggtcaacgca
      901 gcggctgaag gtggtccgag cagcggcccg gacaccggtg cgcggggctg aaccactgat
      961 gggcgacatc ggccgaggct tagcgggaat cgctgcactg tcgggttacg ctggcagctg
     1021 aggcgggtcc gtcgaggtac ccgcgatcgc agtccggaga tcgacatgag cggtgcgaac
     1081 cccggctact ggcggcgact cgtccgccag ctcaccagcg acgctaccga actagacgcc
     1141 gaggatctgt gccgccgtgt tgagcagtcc gacgcgcggc gcgccagtga ctgcagctgc
     1201 ggtcaggcgg tgaccgtttt gggacggctt cgtagcgtgg agcactgtcc ccgggcagcg
     1261 gtggccaccc tggaggccga gctgttcgac ggttccgagg cagttaccct ggtgtggctg
     1321 ggacggcggc gaatacctgg tattgaaccc ggacgtactg taaaggcgtc gggccggctc
     1381 gccgttcggg acggccacaa ggtcctgtac aacccctact acgagctgca gcggagttca
     1441 tgacggagtc cacaagagag tccccgcccg gacagcccgt atccgagccc gccactgatg
     1501 gggacttggc actcaccgag cagcgcaccc ctaccctgct gaaacagctg ggtggcgtct
     1561 ggggtctggt ggcttccgtc gtgccggtgg tggtcttcgt cgcggtgaat ccgctggccg
     1621 ggttaccacc ggcgatctgg gcctcgctgg gcgtcgcgct cgcgctaggg gtgtggcggc
     1681 tggtccgccg ggaggttttg cagccggctg tgtctgggat tctcggagtg gccgtctgcg
     1741 ccttcatcgc ttaccgcacc ggtgaggcgc gagggttctt cctctac
//
LOCUS       DASVXZ010000533         2556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1759599, whole genome shotgun sequence.
ACCESSION   DASVXZ010000533 DASVXZ010000000
VERSION     DASVXZ010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1759599"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /gene="sufC"
                     /locus_tag="VF788_11055"
     CDS             <1..202
                     /gene="sufC"
                     /locus_tag="VF788_11055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803858.1"
                     /note="part of SUF system involved in inserting
                     iron-sulfur clusters into proteins; in Escherichia coli
                     this protein forms a complex with SufBD; the SufBCD
                     complex stimulates the cysteine desulfurase SufS in
                     conjunction with SufE; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEX8934704.1"
                     /translation="NRAKENTGLGVLLITHYTRILRYIKPDFVHVFVAGRIAEQGGPE
                     LAEQLEAEGYVKYGKQEAASTR"
     gene            229..1503
                     /locus_tag="VF788_11060"
     CDS             229..1503
                     /locus_tag="VF788_11060"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX8934705.1"
                     /translation="MTTTAAPLDVTALRADFPILSRTVRDGKRLVYLDSGATSQRPAQ
                     VLDAERKFLEEHNAAVHRGAHQLAEEATDAYESARARIAAFVGAAPEEVVFTKNATEG
                     INLVSYALSNSSIGEGTAKRFAVTPGDEIVVTEMEHHANLVPWQELCRRTGATLRWYQ
                     VTDSGRLDLDSLELSERTRVVAFTHQSNVMGTVPPVGELVRRAREVGALTVLDACQSV
                     PHAPVDFAALDIDFAVFSGHKMLGPSGVGVLYGRRELLEALPPFITGGSMIELVKMEA
                     STYAPPPQRFEAGVPMTSQAVGLGAAVDYLSAVGMDRIAAHERVLTELALAGLSEIED
                     VQILGPTDHVDRGGAVSFTVGDVHAHDAGQVLDSLGIAVRASHHCAWPLHRRFGLAAT
                     VRASFALYNTPAEVDALVAGVHEVRRFFRVGA"
     gene            1500..1973
                     /locus_tag="VF788_11065"
     CDS             1500..1973
                     /locus_tag="VF788_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEX8934706.1"
                     /translation="MKLEQLYQEIILDHYRNPHRSGLREPFDAESYQVNPTCGDEVTL
                     RVALDGDRVADVSYDAIGCSISQAATSVLTDLVIGRTVAESTSTMDAFVEMVQSRGQV
                     EPDEDVLEDAVAFAGVSRYPSRVKCALLGWMAFKDAVGRADAGGAGNGAQRTETQ"
     gene            2015..2374
                     /locus_tag="VF788_11070"
     CDS             2015..2374
                     /locus_tag="VF788_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEX8934707.1"
                     /translation="MPEIPEARSDGDVTAVDDLEEAMRDVVDPELGINVVDLGLVYDI
                     RVDEGNVATLDMTLTSAACPLTDVIEDQTRAALTGGPGGGLVEDVRINWVWMPPWGPD
                     KITEDGREQLRALGFTV"
BASE COUNT          420 a          825 c          887 g          424 t
ORIGIN      
        1 gaaccgcgcg aaggagaaca cgggtctcgg cgtcctgctc atcacgcact acacgcgcat
       61 cctgcgctac atcaagcccg acttcgtgca cgtcttcgtg gccggccgga tcgcggagca
      121 gggtggcccg gagctcgccg agcagctcga ggccgagggc tacgtgaagt acggcaagca
      181 ggaagctgcg agcacccgct gacgttacag ctgttgagag gaggcgctgt gaccaccact
      241 gcggcaccac tggacgtaac agctctgcgg gctgacttcc cgatcctgtc gcgcaccgtg
      301 cgcgacggga agcgcttggt gtacttggac tccggcgcca cctcgcaacg cccggcgcag
      361 gtgctcgacg cggaacgcaa gttcctcgag gagcacaacg cggccgtgca ccgcggtgcg
      421 caccagctgg ccgaggaggc caccgacgcg tacgagtcgg cccgggcccg gatcgccgcc
      481 ttcgtcggtg ccgcgcccga ggaagtggtg ttcaccaaga acgctaccga ggggatcaac
      541 ctggtctcct acgcgctgag taactcctcg atcggcgagg gcacggcgaa gcgcttcgcc
      601 gtgacgccgg gtgacgagat cgtcgtgacc gagatggagc accacgccaa cctggtgccc
      661 tggcaggagt tgtgccggcg taccggcgcg acgcttcgtt ggtaccaggt caccgacagc
      721 ggccggctgg acctggactc gctggagctg tcggagagaa cccgggtggt cgccttcacc
      781 caccagtcca acgtgatggg taccgtcccg ccggtcgggg agctggtccg gcgggctcgc
      841 gaggtcgggg cactgaccgt gctggacgcc tgccagtcgg taccgcacgc tccggtcgac
      901 ttcgccgcac tggacatcga ctttgcggtg ttctctgggc acaagatgct gggtccctcg
      961 ggcgtcggtg ttctctacgg gcgccgcgag cttctcgagg cattgccacc gttcatcact
     1021 ggcgggtcga tgatcgaact ggtgaagatg gaggcctcca cctacgcccc accaccgcaa
     1081 cgtttcgagg ccggcgtccc gatgacctcc caagcggttg ggctgggcgc agcggtggat
     1141 tacctgtcgg ccgtgggcat ggaccggatc gcggcccatg agcgtgtcct gactgaattg
     1201 gcgctggccg gcctgtcgga gatcgaggac gtgcagatcc tcggtccgac tgaccacgtg
     1261 gaccggggtg gcgcggtgtc cttcacggtt ggtgatgtgc atgcccatga cgccgggcag
     1321 gtcctcgaca gcctggggat cgcggtccgg gccagccacc actgcgcttg gccgctgcac
     1381 cgtcgcttcg gactcgccgc gacggtgcgg gccagcttcg cgctgtacaa cacccccgcc
     1441 gaggtcgacg ccctggtggc cggggtgcac gaggtgcgcc ggttcttccg ggttggcgca
     1501 tgaaactgga acagctgtac caggagatca tcctggacca ttaccgcaac ccgcaccgca
     1561 gcgggctgcg tgagcctttc gatgccgagt cctaccaggt caaccccacc tgcggtgacg
     1621 aggtgacgct gcgcgtggcg ctcgacggcg accgggtcgc cgacgtgtcc tacgacgcta
     1681 tcggttgttc gatcagccaa gcggcgacgt cggtgcttac cgatctggtg atcggccgaa
     1741 ccgtcgccga atcgacgtcc acgatggacg cttttgtgga gatggtgcag agtcgcgggc
     1801 aggtagaacc cgacgaggac gtcctggagg acgcggtcgc cttcgccggc gtgtcgcggt
     1861 acccgtcccg ggtgaaatgc gccttactcg gctggatggc gtttaaggat gccgtcggcc
     1921 gggcagatgc tggcggcgcg ggcaacggcg cccagcgaac ggagacacag tgagcctgaa
     1981 cgacgaatcc gaagtggtac gcggtgcggc cgggatgccc gagatccccg aggctcgttc
     2041 ggatggagac gtgaccgcgg tcgacgacct tgaggaagcc atgcgtgatg tcgtcgatcc
     2101 cgagctgggc atcaacgtcg ttgacctcgg cctggtctac gacatccggg tcgatgaggg
     2161 caatgtcgcc acgcttgaca tgacgctgac ctccgcggca tgcccgctga ctgacgtcat
     2221 cgaggaccag acacgcgccg cgctcaccgg cggccccggt gggggactgg ttgaggacgt
     2281 ccggatcaac tgggtatgga tgccaccgtg gggtcccgac aagatcacag aggacggccg
     2341 ggaacaactg cgagctctgg gtttcaccgt ctgacgcaac cttgccgact ggcttggtcg
     2401 gcaggacatc aggcaacagg tgcgacgcgc tcgtctccgc ggacaacttc cacccggtcg
     2461 gaactcgtac gcccggctac ccagctggta gcgcgcatcg acttggcgtg gcggtgcagg
     2521 cgggccagca tccgggagat gtctcggtgc cccgct
//
LOCUS       DASVXZ010000534         6849 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_237840, whole genome shotgun sequence.
ACCESSION   DASVXZ010000534 DASVXZ010000000
VERSION     DASVXZ010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6849
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237840"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VF788_11075"
     CDS             <1..615
                     /locus_tag="VF788_11075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934708.1"
                     /translation="RDGQPCPTTRDFSVVDQDQSDNLTTRYLALAGGRTAQDTAANIA
                     GLPVRTVLKNASDNGLLTGFINPALGCTPFTAPDLTAGGTPAPSLALNELQAAATKTT
                     PVALIPPNDPMAQVNGRPSVAKTNLYRAGVNQPPLDPAVDTALNYCRNLATVAKARLR
                     LDRPLTIGAPSPDPAAAKNLFAFLQQRLKASFTDLACVQNRRKR"
     gene            complement(654..1739)
                     /locus_tag="VF788_11080"
     CDS             complement(654..1739)
                     /locus_tag="VF788_11080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934709.1"
                     /translation="MRKRVSAEAVREDGSPEPSSETGSSRAGLPDAQPPDAQTSRADG
                     APGSRTAEEASTASVGSPLDVTTALPQALKIAGAVVAPSSLLTALMFYFGRQWANGFF
                     RYFGVHFTVMDFTVQDYLIRSVDGLILPLIAAAGATLLALWIYQLPLEALPARTQRIA
                     LRLLMPPTSIAGLVLVSLALADVWSPVFPATFPEGRGLSFSIGVLLLAYATRLVRLLA
                     TPRRPGHVRRRVSAAVAVGRAGALFILVSVGLFWAVGDYANLVGMGRAQGVEASLPGY
                     PDVVLYSEKSLSMQGPGVRETGCRYPEAAYRFRYETLKLVLQSGNQYLLLPSGWTHLN
                     GAAIVLPRSQSLRLEFSPPGQVRNPTC"
     gene            complement(1745..2164)
                     /locus_tag="VF788_11085"
     CDS             complement(1745..2164)
                     /locus_tag="VF788_11085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934710.1"
                     /translation="MPAPGPLRPGGASRLVDGADAGTVSGWWKEIQGHCKRETGNPKC
                     VTYRVQYQTESGEVKSDGPKSKYNDCTINKENVRPKAAATSDEKISSGIVITLDIDPS
                     SCLDQQQNQNNQNQQKNQNQRNNQNQQDQKSQEPPPQ"
     gene            complement(3732..>6849)
                     /locus_tag="VF788_11090"
     CDS             complement(3732..>6849)
                     /locus_tag="VF788_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEX8934711.1"
                     /translation="DEVTRVAREVGTEGILGGQAQVPGVAGTWRDLTDSVNFMAGNLT
                     DQVRNIAQVATAVQRGDLTQKINVDARGEILELKNTLNTMVDQLSAFADEVTRVAHEV
                     GSEGKLGNQAQVRGVAGTWKSLTDNVNGMADNLTSQVRSIATVATAVAGGDLSKKITV
                     EARGEVAALAETINRMVDTLSAFADEVTRVAREVGTEGTLGGQARVPNVAGTWKDLTD
                     NVNGMADNLTSQVRSIATVTTAVASGDLSKKIDVDARGEILELKTTINTMVDRLSAFA
                     SEVTRVAREVGTEGKLGGQAEVIGVSGTWQRLTENVNVLAGNLTSQVRSIATVITAVT
                     AGDLTPQITVEASGELAELSDNINQMIATLRETTRTNEEQDWLKTNLARLSSLMQGLR
                     DLPTVASLVLSELAPLVSAQQGAFFLVRDASDNPTVGPVVEFTAGYGIQDPASIRRFA
                     LGESLVGQAALDKRTILVTDAPPDYAAITSGLGRAAPTNLLVLPLLFEDQALGVIELA
                     SFNEFTPVHRDLLERLRETIGLNVNTILANSRTESLLAESQRLTRELTSGSQRLQAQQ
                     YELQKSNTELAEKAALLATQNRAIEIKNAEIELARQEIEERAAQLAAASRYKSDFMAN
                     MSHELRTPLNSALVLAKLLADNLDGNLMDKQVEFARTIHSAGSDLLQLINDILDLAKV
                     EAGRMDPSLSDVAIASVVSYVETLCRPLAAEKALHFSVELDPALPEMLRTDEQRLQQV
                     LRNLMSNAVKFTDEGGVTLRIRPASAEEVEDEALRAAPARVAFEVEDTGIGISADKLS
                     VIFEAFQQADGTTSRRYGGTGLGLSISRQLTQLLGGELTVRSEPGVGSVFTLFLPEAA
                     TQSPPVASSTSTRDLPLGEQAPPELVTTARSLPQLHSARDDAPPRFHGEKILIVDDDL
                     RNVFALTSMLEAHGLHVVFADNGVAGVRALERNEDIALVLMDVMMPELDGNATMTAIR
                     SLHRYADLPIIAVTAKAMKEDRAKSLASGANDYVTKPVDTDLLLGLIKAHLYAPTEAE
                     ASPASSPR"
BASE COUNT         1143 a         2150 c         2243 g         1313 t
ORIGIN      
        1 cgggacggcc agccctgccc gaccacccgt gacttctcgg tagttgatca ggaccagagt
       61 gacaacctca ccacccgtta cctggcattg gccggcgggc gcaccgcgca ggacaccgcg
      121 gcgaacatcg cgggtctgcc ggtgcgcacc gtcctgaaga atgccagcga caacgggttg
      181 ttgacggggt tcatcaatcc ggcgctgggc tgtaccccgt tcaccgcacc cgacctgacc
      241 gctggcggga cgccggcacc gtcgttggca ctcaacgagc tgcaggctgc ggccacgaag
      301 acgacgccgg tggcgctgat cccgcccaat gacccgatgg cgcaagtcaa cggccggcca
      361 agcgtggcca agacgaacct gtaccgggcc ggggtcaacc agcctccgct cgatcctgcg
      421 gtcgataccg ccctgaatta ctgccgcaac cttgccaccg ttgccaaagc acggttacgc
      481 ctcgatcggc cgctgaccat cggtgccccg tccccggatc cggccgctgc gaagaacctc
      541 ttcgccttcc tgcagcagcg actgaaggct tcgttcaccg acctggcctg tgtccaaaac
      601 cgacggaagc gatgacagag tcaatgggcg ggacgtcgat aggcgggacg cgctcaacac
      661 gtggggttgc gcacctggcc tggcgggctg aattccagcc gcagcgattg gctgcgtggc
      721 agcacgatgg cggcgccgtt caagtgcgtc cagccggatg gaaggaggag atactggttc
      781 cccgactgca gcacgagctt gagcgtttcg taacggaacc ggtaggccgc ctcagggtat
      841 cggcatcccg tctctcgaac gcccgggcct tgcatgctca gactcttctc gctgtatagc
      901 accacatccg gatagccggg caaggacgcc tcaactcctt gcgcacgtcc cattccgacg
      961 agatttgcgt agtccccgac cgcccagaac agccccacgc tcaccaggat gaacaaagcg
     1021 cccgcccgac ccacggcgac ggctgcagac acgcgtcgtc gtacgtgccc tggtcggcgc
     1081 ggtgttgcta atagccgcac caaccgggtg gcgtacgcta gcagcaagac tcctatcgag
     1141 aagctgagcc cgcggccctc cggaaaggtc gccgggaaca cgggagacca gacatcagcc
     1201 agcgccagac tcaccagcac caaaccggca atgctggtgg gcggcattaa caggcgtaac
     1261 gcgatccgct gggttcgggc aggcagcgct tccagtggca gctggtagat ccaaagagcc
     1321 agcaaggtgg cccctgcggc tgcgatcagt ggaaggatca ggccatcaac gctgcggatc
     1381 aggtagtcct ggaccgtgaa atccatgaca gtgaagtgca cgccgaaata gcggaagaac
     1441 ccattagccc actgtctccc gaagtagaac atcaatgccg tgagaagtga cgagggggcg
     1501 actactgctc cggcgatctt cagcgcttgg ggcagcgcag tagtgacatc gagtggagaa
     1561 cctacactgg cagtgctggc ctcctcggcg gtcctgcttc caggggcacc gtcggctctg
     1621 gacgtttggg cgtctggtgg ctgtgcatca ggtaaacctg ccctggatga ccctgtttct
     1681 gaggacggtt cgggggaacc gtcctctcgc actgcctcgg cgctgaccct tttccgcata
     1741 agcgctattg cgggggtggc tcttggctct tctggtcttg ctggttctgg ttgttccgct
     1801 ggttctggtt tttctgctgg ttctggttgt tctggttctg ctgctgatct agacatgagg
     1861 acgggtcgat atccagcgtg ataacgatgc cggaacttat tttttcatcg gaggttgcag
     1921 ccgcctttgg gcggacattt tccttattga tcgtgcagtc attgtatttc gatttggggc
     1981 catctgattt aacttcgcca gattcggtct gatactgaac tctgtaagtc acacacttcg
     2041 ggttgccagt ttcgcgtttg cagtgtcctt gtatttcctt ccaccaaccg ctcacggtgc
     2101 cggcatcggc tccatcgacc agtcggctcg cgcccccggg gcgtaatggc ccgggggccg
     2161 gcacgggctc gggtgctttc ggtaggggcg ctgccgcggg tggaggcggg gccgctggtg
     2221 ctggcgctaa gggaacctcc tgcacttgcg gcggtggagc cgctggagcc ggcccgggtg
     2281 gggcctcctg aaggccaccc tgtggcgcgt tgacgggtgc tggcgccggt gcgggggcga
     2341 ccacgtatac cggtgggcca ccgcaagaga tcactattgt gctcagtagc gcagaacaga
     2401 tcagcgatgc gcgccgtccc gacgtggaca tcttgacccc cgagctggta agcggtggtc
     2461 cccgcacaga atagatgtcc ccgaggccgt tctgatacat cgattttcga tgaattttgc
     2521 tgctcttcgg cgggagaagg gggcgacggc gaaggtggcg ccgctgccgt cgacgatctc
     2581 gcggtgacga gagaggcacg cttggcgacg aaccctcacc ccggtagctc ttatcgagcg
     2641 agtatgtgcc gatcggcacc gctgagccac cccgcagatc aacttgagaa atacactcag
     2701 ggccggtgtc actcgatcag ccggacggca ttactggagg cgaccatgca ggcaagcgtc
     2761 ttggacgtcg tggagcgagg cgatcgatca ccgtggccag cgctgctcct ggtaggccag
     2821 gcaggggagg gacgttaacc actgccatgg gtccacccat tagtggctat ggttactgga
     2881 ccacagtgac atgtcggtga tcgcgcccac tcatgatcaa cgcagtctgt gtggctgccc
     2941 tcgtcgtggc gtttctcgcg gtgtcagcgc gcttgcgcaa ccagcggcgc cgcgtccagc
     3001 tgcgggctca ccaacaccgg atcgcacgat cgaagactta gcgaggatga taggtgtaat
     3061 aatcgtgtgg gacgaggcct ttgactccat cccatagcgc gtagatcatg ttgctgaagt
     3121 tctgtgcggc gctaggcagc gcgttcgaga tgggggcacc aagcaggttc aggagaatga
     3181 gaactaggat taccaccaca aagaagttca cgaccctgac gatcgaatgt cctatattcg
     3241 gcgctgccat cggattcccc ttctattccc ttgccctggt cggactgtgc gtagtgctac
     3301 ggtcgtactt ggtacctgtt gcggcgacct agggcggcgg tcgcttgcgg tcgagttgcg
     3361 gaggcgccaa cacgcccgtc gtgtcaaggc cgatgacaca cgaagccaca gccatcatct
     3421 cctgccgtca cgtctggagt agatacgggc ggtgtggagc tgcgggccgt gcgcttcgtg
     3481 cccgttgggt agtgtgccag atccgggaac tgatgagtcg gagccctcga gaaggtgcgg
     3541 tacccgcggg agaccgcgcg tccgtcctcc tgggtccagc gctcggcaag cgtcgttaca
     3601 aaacgctctg acgtgtcgcc gggagtgacc acacgcacta gggtacgggc tgcgtccatg
     3661 ccaatacaga ctgcgacgga acgtgtcccc cagatggatc acggtgatac acctgcggtg
     3721 gcgcgatccg gctaccgcgg gctgctggcg ggggaggcct cagcctccgt cggggcgtag
     3781 agatgtgcct tgatcagtcc cagcagcagg tcggtatcca cgggcttggt gacgtagtcg
     3841 ttcgccccgg aggccaggct tttcgcccgg tcctctttca tcgccttcgc ggtaaccgcg
     3901 atgatgggca ggtcggcgta gcgatgcagg ctgcggatcg ccgtcatcgt cgcgttaccg
     3961 tccagttcag gcatcatcac gtccatcaga accagcgcaa tgtcctcgtt gcgctccagc
     4021 gcgcggacac cggccactcc gttgtcggcg aagactacgt gcagaccgtg cgcctcgagc
     4081 atgctggtca gtgcgaagac gttgcgcaga tcgtcgtcga cgatcaggat cttctccccg
     4141 tggaagcgtg gcggcgcgtc atcccgcgcc gagtgcagct gcggtagtga cctggcggtc
     4201 gtgaccagct cgggtggcgc ttgctcaccg agggggaggt cccgggtgga ggtgcttgaa
     4261 gccaccggcg gagactgcgt ggcggcttcg ggcaggaata gcgtgaaaac gctgcccacc
     4321 ccgggttcac tacggaccgt cagctccccg ccgagcaact gggtcagctg gcggctgatc
     4381 gacagcccga gcccggtgcc accataacgt ctgctggttg tgccgtcggc ctgctggaac
     4441 gcttcgaaga tcaccgacag cttgtcggcg gagatcccga tgccggtgtc ctccacttcg
     4501 aacgccaccc gggccggcgc ggcgcgcagc gcctcatcct ccacctcctc agcagacgct
     4561 ggccggatcc gcagtgtcac tccaccctca tcggtgaact tcaccgcatt ggacatcaga
     4621 tttcgcagca cctgctggag gcgctgttcg tcggtgcgca gcatctcagg cagcgccgga
     4681 tcgagttcca cggagaagtg cagtgccttc tcggcagcca gtggccggca caacgtctcg
     4741 acgtagctca ccaccgaggc tatggctaca tcggacagcg acggatccat ccgtccggct
     4801 tccaccttgg ccagatcgag gatgtcgtta atcaactgca gcaggtcgct gccggccgag
     4861 tggatggtcc tggcgaactc gacctgcttg tccatcaggt tgccgtccag gttgtccgca
     4921 agcagcttgg ccagcaccag cgcgctgttg aggggggtgc gcagctcatg cgacatgttc
     4981 gccatgaaat cggacttgta gcgcgatgcg gcggccagct gtgcggctcg ctcctcgatc
     5041 tcctggcggg ccagttcgat ctcggcgttc ttgatttcga tggcgcggtt ctgcgtcgcc
     5101 agcaaggcgg ccttttcggc gagctcggta ttggacttct gcagctcgta ttgctgggct
     5161 tgcagtcgtt gcgaacccga ggtcagttcc cgggtcagcc gctgtgactc agccaggagg
     5221 gactcggtcc gggagttggc caggatggtg ttgacgttca agccgatcgt ctcgcgaagg
     5281 cgttcgagca ggtcccggtg cactggggtg aactcattga acgaggccag ctcgatcact
     5341 cccagcgcct ggtcctcgaa cagcagcggc agcacgagca ggttggtcgg cgcggcgcgg
     5401 ccgaggccag aggtgatcgc ggcgtagtcc ggtggcgcgt cggtgaccag gatcgtccgc
     5461 ttgtcgagcg ccgcctgccc gaccagcgac tcgccgaggg cgaagcgacg gatgctcgcg
     5521 ggatcctgaa tcccgtaacc agcggtgaac tccacgactg gcccgacagt cgggttgtcg
     5581 ctggcgtcgc gaaccaggaa gaaggcccct tgttgggccg acaccagggg agcgagttcg
     5641 ctcagcacca gtgaggccac ggtgggcaga tcgcgcagac cctgcatgag actggacagc
     5701 cgggcgaggt tggtcttgag ccagtcctgc tcctcattgg tccgggtggt ctcccgcaga
     5761 gtggcgatca tctggttgat gttgtcggag agctcagcga gctcaccgga cgcctcgacg
     5821 gtgatctgcg gggtcaggtc cccagcggtc accgcggtga tcaccgtcgc gatggaacgc
     5881 acctggctgg tcaggttgcc cgcgaggacg ttgacgttct cggtcagccg ctgccatgtg
     5941 ccggacaccc cgatcacctc ggcctgccca ccgagcttgc cctcggtgcc gacctcgcgg
     6001 gccacccggg tgacctcgga ggcgaacgcg gagagccggt ccaccatggt gttgatcgtg
     6061 gtcttgagtt ccaggatctc accgcgagcg tccacgtcga tcttcttgga caggtcaccg
     6121 ctggccacgg cggtggtcac ggtggcgatg ctgcgtacct ggctggtcag gttgtccgcc
     6181 atgccgttga cgttgtcggt gaggtccttc caggtgccgg cgacattggg cacccgggcc
     6241 tggccgccca gggtgccctc ggtgcccacc tcgcgggcta cccgggtgac ctcgtcggcg
     6301 aaggcgctca aggtgtcgac catccggttg atggtctcgg ccagcgcggc aacctcaccg
     6361 cgggcctcca cggtgatctt cttcgacagg tcaccgccgg ccaccgcggt cgccacggtg
     6421 gcgatgctgc gtacctggct ggtcaggttg tccgccatgc cgttgacatt gtcggtgagc
     6481 gatttccagg tgccggcgac cccgcgcacc tgggcctggt tgccgagctt gccctcgctg
     6541 cccacctcgt gggctacccg ggtgacctcg tcggcgaagg cggagagctg gtcgaccatg
     6601 gtgttgaggg tgttcttgag ttcgaggatc tcgccgcggg cgtcgacgtt gatcttctgg
     6661 gtcaggtcgc ctcgctgcac ggccgtcgcg acctgggcga tgttgcggac ctggtcggtc
     6721 aggttgccgg ccatgaagtt cacggagtcc gtcaggtcgc gccacgttcc ggcgacgcct
     6781 ggcacctgcg cctgaccacc caggatgccc tccgtgccga cctctcgggc cactcgcgtg
     6841 acctcgtcg
//
LOCUS       DASVXZ010000535         2360 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1463309, whole genome shotgun sequence.
ACCESSION   DASVXZ010000535 DASVXZ010000000
VERSION     DASVXZ010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1463309"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VF788_11095"
     CDS             <1..255
                     /locus_tag="VF788_11095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEX8934712.1"
                     /translation="PRIRDLRRAGSAALDLCSVASGWLDGFAEHGLHRWDWAAGALIA
                     AEAGAVLRLPEPGSDLLLAAAPGIVDALAELAARCGADAV"
     gene            complement(283..999)
                     /gene="cei"
                     /locus_tag="VF788_11100"
     CDS             complement(283..999)
                     /gene="cei"
                     /locus_tag="VF788_11100"
                     /inference="COORDINATES: protein motif:HMM:NF035953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope integrity protein Cei"
                     /protein_id="HEX8934713.1"
                     /translation="MATVGSSDARVEGYRTRRPLRALLLAVILSTAAGLVWFSVLHQT
                     DRGCQSGDPASAVAAGSYQRLGANALDGVTPAPPQLTRVQVLNANGVRGEATIVDGAL
                     AHLGFAPTTAPSNDPYHPDFDLRCYGEIRFGTAGQAAARTLSLAVPCAELVHDVRPDA
                     VVDLALGTKFIALQPNDAARGALLELAGLGRTGLRQAEPSRGGLAAQPDPQAGSEVIP
                     APAVPVVNPELLALARRVRC"
     gene            1335..1637
                     /locus_tag="VF788_11105"
     CDS             1335..1637
                     /locus_tag="VF788_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005513624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4193 domain-containing protein"
                     /protein_id="HEX8934714.1"
                     /translation="MATDYDAPRRSEADELVEDSLDELKARRNEAQSGAVDVDESESA
                     ENFELPGADLSGEELIVRVLPKQADEFTCSSCFLVHHRSRLAEQRNGRMVCRDCAA"
     gene            complement(1668..2246)
                     /locus_tag="VF788_11110"
     CDS             complement(1668..2246)
                     /locus_tag="VF788_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3093 domain-containing protein"
                     /protein_id="HEX8934715.1"
                     /translation="MHILSGHSGSETTLDLVSDSQPPQECPPEAEPTFTERLAVPLWW
                     WPLAFGVAILLAAEVHMGYPGVRAWLPYLVTVPLAGVVLWWMGRHRVVLRGGELQVGP
                     ARISLRYLGPIQVICPNAKRHALGPGLDPAAFVLHTGWVGPTLRITVTDPADPTPYWI
                     FSVRRAEKLAELLRSCSNELPRNGPGPRRASM"
     gene            2254..>2360
                     /locus_tag="VF788_11115"
     CDS             2254..>2360
                     /locus_tag="VF788_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEX8934716.1"
                     /translation="MPPLEVLLTRLDPEVPVPGYSHAGDAGADLVTTQDL"
BASE COUNT          383 a          786 c          830 g          361 t
ORIGIN      
        1 ccgaggatcc gggacctgcg ccgggccggg tcggctgctc tggacctgtg ctcagtcgcg
       61 tccggctggc tggatggttt cgccgagcac gggttgcacc gctgggactg ggcggccggt
      121 gcgctgatcg cggcggaagc cggtgcggtc ttgcggctac ccgagcccgg atcagacttg
      181 ttactcgcgg ccgcgccggg aatcgtcgac gcgctggcgg agctggccgc acgatgcggt
      241 gccgatgcgg tgtgaccggt gcgtcagccc tccgtcatcc ggtcagcatc tcacccgccg
      301 ggccagcgca agcagctccg gattcaccac gggtaccgcc ggcgctggaa tcacctcgga
      361 ccctgcctgg gggtccggct gggcggccag gccgccacgg gagggttccg cttgtcggag
      421 tccggtacgt cccagtccgg ctagctcgag gagggcgccg cgcgctgcat cgttgggctg
      481 cagcgcgatg aacttggtcc ccaacgccaa gtcgaccacc gcgtccgggc ggacgtcgtg
      541 gacgagttcg gcgcacggca ccgccaagct caacgtgcgg gccgccgcct gccccgcagt
      601 gccgaagcgg atctccccgt agcagcgcag gtcgaaatcg gggtggtagg gatcgttgga
      661 cggcgcggtg gtgggggcga atcccaggtg ggccaacgcg ccatcgacaa tggtcgcctc
      721 accgcgaacg ccattggcgt tgagcacctg cacccgcgtg agctgaggtg gggccggcgt
      781 tactccatcc agggcattgg ccccgagccg ttggtaggaa ccagccgcca cggccgaggc
      841 tgggtcgccg ctctggcagc ccctgtcggt ttgatgcagc acgctgaacc acaccaaccc
      901 tgccgcggtg ctgagaatga ccgcgagcag cagcgcacgc aatggtctgc gagtgcggta
      961 gccctccacc cgcgcgtctg acgagcccac agtggccacg gccccgccct tcctggcccc
     1021 tcaccagggc cagccccttc ttggagggta ggggcgcggg cggggcagca cagccggcga
     1081 tggcgtattg gcggctgagt tcgcccagtt ggccgccagt tcggatcgga cacgggcgag
     1141 acacgccgcg gaaattcgtt gcccgctgtg accaaggggc tattgtcgcc gctctggcgc
     1201 cgccaagggg ctcacgggag gggtgcgccg ggccgtaccc gcatcgtcca agtgtgacgg
     1261 acgtctcggg cacaaatcgc ggtgcctatg cgtttgtgct gcggcacgac ccgtacgact
     1321 caggggtggg aagcatggcg accgactacg acgctccacg gcggagcgag gctgacgagc
     1381 ttgtcgagga ctcgctggac gagctcaaag cgagacggaa cgaggctcag tcgggtgcag
     1441 tcgacgtcga cgagtcggag tccgcggaga acttcgagct acctggcgct gacctgtccg
     1501 gcgaggaact gatcgttcgc gtgctgccta agcaggctga cgagttcacc tgttcgagct
     1561 gtttcctcgt ccatcaccgc agcagactgg cagaacaacg caatggaagg atggtctgcc
     1621 gggactgcgc ggcctagggc ctcgggcggt catccatcac gcgctgttca catgctggcg
     1681 cgacgaggac cggggccgtt gcgaggtaac tcgttggagc agcttcgtag cagttcggcg
     1741 agtttctccg cccgacggac actgaagatc cagtaggggg ttgggtccgc cggatcggtg
     1801 acggtgattc gcaacgtggg cccgacccag ccggtatgga gcacgaatgc cgctgggtcc
     1861 aggcctgggc ctagcgcgtg ccgcttcgcg ttcgggcaga tcacctggat cggcccgaga
     1921 taacgaagcg agatacgcgc tgggcccacc tgcagctcac cgccgcgcag cacgacccgg
     1981 tgccgcccca tccaccagag caccacgccg gccagcggca ccgtcaccag gtacggcagc
     2041 cacgcgcgaa ctccggggta acccatgtgc acctcggccg ccaagaggat ggccaccccg
     2101 aaagccagcg gccaccacca caacggtacg gccaggcgct cagtaaacgt cggctcggcc
     2161 tcaggtgggc actcctgcgg gggttgggaa tcggacacca gatcgagggt agtctcgctg
     2221 cccgagtgcc cggagaggat gtgcacagcc gagatgcccc cactcgaagt tctgctcacc
     2281 cgactggacc cggaggtgcc ggtgcccggt tattcccacg ccggggacgc cggagccgat
     2341 ctggtcacca cccaggatct
//
LOCUS       DASVXZ010000536         1711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_416876, whole genome shotgun sequence.
ACCESSION   DASVXZ010000536 DASVXZ010000000
VERSION     DASVXZ010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416876"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..>1711)
                     /gene="asnB"
                     /locus_tag="VF788_11120"
     CDS             complement(209..>1711)
                     /gene="asnB"
                     /locus_tag="VF788_11120"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEX8934717.1"
                     /translation="DRLNGMYAFALWDTDREQLLLVRDRMGIKPLYYTETEHGLLFGS
                     EPKAIFANPLIEPVVDANGLREILAFVKNPEQAVYRDLRELRPGCLLRVGREGTTVHR
                     YWKLEAHEHTDDLHTTVTTVRELLDDIVSRQLISDVPLCSLLSGGLDSSAVTALAARQ
                     LAAAGRGAVRSFAVDFTGYTDNFTADPMRNTPDAPFVHELAHHVGADHTDIVLSTSEL
                     MDPAHRAAVVRASDLPLGGDMFTSLYLLFAAIRARSTVALSGESADEVFGGYRWFHDA
                     AAHADTFPWLAAFGQFPGQEAQPRQTLFTDELMSQLDIPSYRADSYRSALTEVPHTDT
                     TDPMERRMREVCYLHLTRFVQFLLDRKDRMSMASGLEVRVPFCDHRLVQYVFNTPWSF
                     KTFDGREKSLLRAAVNDVLPASIAQRRKSPYPSTQDPSYEQALRDQLDKLVADGTSPV
                     LDLLDAQRVRALLDSPIGTVSLDAQRRSTELVLTLHDWIAVTGARLDLST"
BASE COUNT          283 a          531 c          597 g          300 t
ORIGIN      
        1 caccagcgca cgcgtcacgc cgcgccggca tgtcgtcgac accacacaaa cggccgaaca
       61 tcaacttgag ccggaacgaa tctcatcgtc ctgtcgtata cgaaattcat gcgacattgt
      121 ccgtgagatt acgacgtcag ctgtgagacc ctacattcgc gacgtggtcg gcactggtgg
      181 ttgagggcga atattcgacg ggtccccctt aagtcgatag gtcaaggcgg gcgccggtca
      241 cggcgatcca gtcgtgcagc gtcaggacga gttcggtgct gcgtcgttgg gcgtcgaggc
      301 tgaccgtgcc gatcgggctg tccaacaggg cgcgaacccg ctgggcatcg agcaggtcga
      361 gcaccggcga ggtgccgtcg gcgacgagct tgtccagctg gtcgcgcagc gcttgttcgt
      421 aggaggggtc ttgggtggac gggtacgggc ttttgcgccg ctgggcgatc gaggccggca
      481 gcacgtcgtt gaccgcggcg cggagcaggc tcttctcgcg gccgtcgaag gtcttgaacg
      541 accagggggt gttgaacacg tattgcacca gccggtggtc gcagaacggc acccgcacct
      601 ccagcccgct ggccatgctc atccggtcct tgcggtcgag caggaattgc acgaaccggg
      661 tcaggtgcag gtagcagact tcccgcattc gccgttccat cggatccgtg gtgtcggtgt
      721 ggggcacctc ggtcagcgcg ctgcggtaac tgtcggcccg gtaactcggg atatccagtt
      781 gggacatcag ctcatcggtg aacagggtct gccgtggttg ggcttcctgg cccgggaact
      841 gcccgaatgc ggccagccac gggaaggtat ccgcgtgtgc ggccgcatcg tgaaaccacc
      901 ggtaaccgcc gaatacctcg tcggcggact ctccggacag tgccactgtc gagcgggctc
      961 ggatcgcggc gaacagcaga tagagggacg tgaacatgtc cccgccgagc gggaggtcgc
     1021 tggcccgcac cactgcggcc cggtgtgccg ggtccatcag ctccgacgtt gacagcacga
     1081 tgtcggtgtg gtcggccccg acgtggtggg ccagctcgtg cacgaacggc gcgtcggggg
     1141 tgttgcgcat cggatcggcg gtgaagttgt cggtgtagcc ggtgaagtcc actgcgaacg
     1201 accgcaccgc cccacgcccg gccgcggcga gctggcgggc ggcgagcgcg gtgactgcgg
     1261 aggagtccag gccacccgag agcagactgc acagcggcac gtccgagatc agctggcggc
     1321 ttacgatgtc gtcgaggagc tcacgcacgg ttgtcactgt cgtatggagg tcgtcggtgt
     1381 gctcgtgcgc ctcgagcttc cagtaccggt gcacagtggt gccctcgcgg ccgacccgca
     1441 gcagacagcc cggccgcagc tcgcgcaggt cccgatacac cgcctgctca gggttcttga
     1501 cgaacgccag gatctcccgt aggccgttgg cgtcgaccac tggttcgatc agtgggttgg
     1561 cgaagatggc cttgggctcc gaaccgaaca gcaacccgtg ctcggtctcg gtgtagtaca
     1621 gcggtttgat ccccatccgg tcgcggacca ggagcagctg ctcgcggtcg gtgtcccaca
     1681 gcgcgaaggc gtacatcccg ttgagccggt c
//
LOCUS       DASVXZ010000537         6528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1014875, whole genome shotgun sequence.
ACCESSION   DASVXZ010000537 DASVXZ010000000
VERSION     DASVXZ010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6528
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1014875"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1891)
                     /locus_tag="VF788_11125"
     CDS             complement(<1..1891)
                     /locus_tag="VF788_11125"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEX8934718.1"
                     /translation="MTAARPSEPGLTTARLAQAWADVASWTVPMSREQIEHLLTRLIN
                     RLISAMATAPVDDQAAVEVAVELLTHGLTEPRGMGRSIEVLAEGLPRLAELQEVDQAR
                     TAVLRMLASLASGYAEALQQRSSEEQKQATQALVQAKQVAELELRICETRFREIFSTS
                     AVGLAISTFDGTVVTANRAFAEIVGLMPVDLIGAALPDLLQARDDTVLAEAYRKLANG
                     ELTRIRHRRQLTAATGEVAWTHVGVSLLRDADRVPTHYLTVVENVTELHLLQRELSTQ
                     ALHDVLTGLPNELYLMSHLQKVLGTADPSTMVTLCRVNLDSFSVITDGIDRAAGDALL
                     RSVARRLHDLVAEQSAMVARLGADDFAIVIEDGPNRPDPGVFAASINDSLREPFYVDD
                     RGLAVSAGVGVAHLPAKGTSPVELIRAADSTLHQVKRSGAGQWGLYDPLADVRQRQRY
                     QRAAEMPGKFENGEIRPRYQPVYGLDSGWIVALQALVRWEQPGGTVVEHAECLRLAAQ
                     TGLAIDLGRWMVQEACAVQNVVSHCPTSGAPLMRVDLTERLSQDPDLFAVLTGALSTT
                     GLPAEQLRVGVPLATLARGHGDVVDNVGTLAALGVEVVLLGAAGGLGYLAYLEDLPVG
                     AVEIAP"
     gene            complement(2150..2284)
                     /locus_tag="VF788_11130"
     CDS             complement(2150..2284)
                     /locus_tag="VF788_11130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934719.1"
                     /translation="MPGGNASTFRQETAELVEDAYRMVAPRALLARLDVARSGAPRRA
                     "
     gene            2382..2522
                     /locus_tag="VF788_11135"
     CDS             2382..2522
                     /locus_tag="VF788_11135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934720.1"
                     /translation="MTTNVILVLLLMGGVGGWYYGRMCAEDRRSEFDMEKNWKARKDY
                     RK"
     gene            complement(2600..3316)
                     /locus_tag="VF788_11140"
     CDS             complement(2600..3316)
                     /locus_tag="VF788_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02206 family membrane protein"
                     /protein_id="HEX8934721.1"
                     /translation="MRAARQFEAFGWSHGAVVALLAVLLGTLVIVGRRYRGTSVERRL
                     SRMLAVVFAGFLIPVEGYYLLPWQWGIKYSLPLQLCDLAAVAAVWALWSYSPAAFALT
                     YFWGLTLTSQAFVSPELTGPDFPSLQFISFFGIHSLVVCAAVYLTWGVGLRPDWRSYR
                     IAVGVTIGWGLAMFAFNHFEGTNYGFLNSKPLAASLLDVLGPWPWYLLSELVVGAAAW
                     ALITWPWEQGRTSQDAYTVS"
     gene            3461..4147
                     /locus_tag="VF788_11145"
     CDS             3461..4147
                     /locus_tag="VF788_11145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934722.1"
                     /translation="MDLPAVLVRSVEKAINVQQGPVAGYVARLRRARPNATPAEIIAV
                     LEKRYLATVTGTGAAVGGAAAAPAVGTALAIALSGGEMALFFEATALFALAVAEVHGI
                     RLVDLERRRTLLLAVVLGDNGAMLVEKVTGRADQHWADLLPEAIPLSSITAVNKALGR
                     WFFRKYARKQGFLALGRLAPFGIGAAIGAAGNRAFGRTVVTTSRRVFGPPPLGFTDDR
                     DVMIINGAVD"
     gene            complement(4169..4675)
                     /locus_tag="VF788_11150"
     CDS             complement(4169..4675)
                     /locus_tag="VF788_11150"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8934723.1"
                     /translation="MLAEPFDIPGNGRMCIAQDSLGAAFGVWQAAGTHGVEIYMEPGS
                     LVWTDARLPDPDAGRTFYAAVFGYRYEHIEGAPPDYTSIHFDAARDGEPVGGIGGMMG
                     APEGTPPHWLAYFMVPDADADAATASAKAAGGTILAEPFDTPYGRMAGITDPHGATFV
                     VVGTMPST"
     gene            4996..6141
                     /locus_tag="VF788_11155"
     CDS             4996..6141
                     /locus_tag="VF788_11155"
                     /inference="COORDINATES: protein motif:HMM:NF016435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEX8934724.1"
                     /translation="MGGSSTGLLCYKPEGQEEFNLETFFREGIAQALRGKARLNVMLA
                     GRVGVGKSTLVNAIFGEPIAPTGVGSSITQTIQRYARPNLPISVYDTPGIELGVEPEL
                     LAKTYLTEIRAQMGDDATRVHFCLYCVRTRDERFEAVESGIVRALAKDVLVALVLTQC
                     PTPDDARANNFARYLRSLDLPVLDGQCFMTLAEEDNVAGVKLPPYGLPDLVSSVYHQL
                     PDAERHTLASCQRVSLELKIAEAKRLVNFNTGTAALIAATPIPLVDAIPLSALQISML
                     GQIATIMGFKVDPRAVATAFATVLGVGSAARTAASFFKIFPGTGTTINTTIASTTTKI
                     LGEVFITACTNVLMRQMAGAQINQDDIVGELLRELPLLLNRALRQSL"
     gene            complement(6259..>6528)
                     /locus_tag="VF788_11160"
     CDS             complement(6259..>6528)
                     /locus_tag="VF788_11160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934725.1"
                     /translation="DDAFRALIDDVLAGRCSLMEASGTAAFSNVVFAGIAQEFDHLTD
                     EEKQRLATQAHSSQVQSAGATVGSCGAPCASCTSVCAALRSSPSQ"
BASE COUNT         1164 a         2099 c         2103 g         1162 t
ORIGIN      
        1 ccggtgcgat ctctaccgcg cctacgggaa ggtcctcgag gtaggccagg taccccaatc
       61 cgcccgcggc gccgagcaat accacctcga cgcccaatgc cgcgagcgtg cccacgttat
      121 ccactacgtc cccgtgaccg cgtgccaagg tcgccaacgg cactccaacc ctgagttgct
      181 cggctggcag tccggtcgtc gacagggcac cggtcaacac cgcgaagaga tcgggatctt
      241 ggctcaatcg ttcggtgagg tcaacccgca tcaatggtgc cccactggtg gggcagtgcg
      301 acaccacgtt ctgcacggcg caggcctcct gcaccatcca gcgcccgaga tcgatcgcta
      361 acccggtctg cgcagccaac ctgaggcact cggcgtgttc caccaccgtg cccccgggct
      421 gctcccagcg tactaacgct tgcagcgcca cgatccaccc gctgtccagc ccgtataccg
      481 gctggtaacg cggtctgatc tcgccgttct cgaatttgcc gggcatctcg gcggcgcgct
      541 gataacgctg ccgttgtcga acatcagcca gcggatcata taggccccac tggccggcac
      601 cgctgcgctt cacctggtgc agcgtggagt ctgcggcgcg gatcagctcg acgggggagg
      661 tacccttcgc gggcaggtgc gccacgccga cgcccgcaga gaccgcgagt ccacggtcgt
      721 cgacgtagaa tggctccctg agcgagtcgt tgatgctcgc ggcgaatacg ccggggtcag
      781 gccggttcgg gccatcctcg atcacgatcg cgaagtcgtc ggcccccaat cgcgcaacca
      841 tcgctgactg ctccgccacg aggtcgtgca gccggcgcgc gaccgagcgg agcaacgcat
      901 ccccagccgc ccgatcaatc ccgtcggtga tgacggaaaa gctgtccagg tttactcggc
      961 acagcgtgac catggtcgac gggtcggcgg tccccagtac cttctgcagg tgggacatca
     1021 ggtacagctc gttaggcagc ccggtgagga catcgtgcag cgcctgggtg gacagctcgc
     1081 gctgcagcag atgcagttcg gtgacgttct cgacgacggt caggtaatgg gtcggcacgc
     1141 ggtccgcgtc gcgcagtagc gataccccga cgtgggtcca ggcgacctcg ccggtcgctg
     1201 cggtgagttg ccggcggtgc ctgatccggg tcagctcgcc gttggccagc ttgcggtacg
     1261 cctcggccag caccgtgtcg tccctagcct gtaagagatc tggcagcgcc gcgccgatga
     1321 gatcgaccgg cataagaccg acgatctcgg cgaatgcacg gttggcggtg accaccgtgc
     1381 cgtcgaaggt gctgatggcg aggcccactg cggaggtgga gaagatctcc cggaaccgag
     1441 tctcgcagat ccgcagttcc agttcagcga cctgtttggc ctgcaccagt gcctgggtgg
     1501 cttgcttctg ttcttccgag ctgcgctgct ggagcgcctc ggcgtacccg ctggcgagcg
     1561 aggccagcat ccgcagcacg gcggttctgg cttggtcgac ctcttgcagc tcagctagcc
     1621 gtggtagtcc ttcggcgaga acttcgatgc tgcggcccat gccgcgtggc tcggtcaggc
     1681 catgggtgag caactcgacg gccacctcga ccgctgcttg atcatcgact ggtgctgtag
     1741 ccatcgccga gatcagccgg ttgatcagcc gggtcaggag gtgctcgatc tgctccctcg
     1801 acatcggcac tgtccaactc gccacgtcag cccaggcctg agcaagcctg gccgtagtca
     1861 ggcctggctc cgacgggcga gcagcggtca caacgtcacc ggtttacggc cactccggac
     1921 aggcgtcaag gccggtgacg gcattcacct gcgcgtcact gggtcgcgcg gcgtccgctt
     1981 ttcgcggcat ccagctcgtg agctgacgca catcgtgcct tccgaacatc gacagaggtg
     2041 tcgcccaggg tactgagtac ggcatcgatg tgattacgtc atcgaggtga cttcgggcgg
     2101 aatcactcag tcacgcgcgg tgacgacaaa tagggcgccc gggtcctaac taggcgcgcc
     2161 ggggggcgcc ggaccgagcc acgtccagcc gggcgagcag ggcgcgaggc gccaccatcc
     2221 ggtacgcgtc ctcaaccagt tccgcggtct cctgccggaa cgtgctggca tttccacccg
     2281 gcaatcaccg tctatcgccc ttacgggtga ttacgaagcg tcaagttgcc atgctttgat
     2341 accacctgga ggggggtcac atcacccgag ggggtgtaga ggtgactacc aatgtgatac
     2401 ttgtcctgtt gctgatgggc ggagtaggtg gttggtacta cggccggatg tgtgccgagg
     2461 accgacgttc ggagttcgat atggagaaga actggaaggc ccgaaaggac taccggaagt
     2521 agttctccgg cgtggccgcc catggtgctt ccgacctcgg cacgagagct gtcgagttcg
     2581 gaaagcgccg atcgccggct caggagacgg tgtaggcgtc ttgcgaagtc cgtccttgct
     2641 cccacggcca ggtgatcagt gcccaggcgg cagcgcccac taccagctca gagagcaggt
     2701 accacggcca cggacccagc acatcaagca gggacgcggc cagcggcttg gagttgagga
     2761 aaccgtagtt ggtgccctcg aagtgattga acgcaaacat ggcgagcccc cagccgatcg
     2821 tgaccccgac cgcgatccgg tagctgcgcc aatccggtcg caaacccacg ccccaggtca
     2881 ggtaaaccgc tgcgcacacc accaggctgt gtatgccgaa gaatgaaatg aactgaagtg
     2941 atgggaagtc cggcccggtc agttccgggc tgacgaaggc ctgcgaggtg agcgtcagac
     3001 cccagaagta ggtcagcgcg aatgccgccg gagagtatga ccacaaagcc cacaccgccg
     3061 ctaccgcggc caggtcacac agttgcagcg gcagtgagta cttgattccc cactgccacg
     3121 gcagcaggta atagccctcc accggtatca ggaacccggc gaacaccacc gccaacatcc
     3181 ggctcaaccg ccgctcgact gaggtgccgc ggtaccgccg cccaacgatg acgagtgtcc
     3241 ccagcaacac cgcgagcagc gccacgacgg cgccgtgcga ccatccgaaa gcctcgaact
     3301 ggcgcgctgc ccgcaccgga tccacgctcg ccgagcctag cgctcacctc actcacccca
     3361 gacccggcgt gtcgcgctcc tggcacgcgc ccggagggtg gattcgcccc cggatccggg
     3421 accggccgtc gcgatactgt gaactatggc ggacggggcg gtggatctgc cagctgtgct
     3481 ggtgcgcagc gtggagaagg ccatcaacgt gcagcagggg cccgttgccg gctacgtggc
     3541 ccgcctgcgt cgagcaagac cgaacgcgac cccggcagag atcatcgcag tgttggagaa
     3601 gcggtacctg gccacggtaa ccggtactgg agccgccgtg ggtggtgccg cggccgcacc
     3661 cgcggtcggg acggcgctcg ccattgcgct cagtggcggg gagatggctc tgttcttcga
     3721 ggccacagcg ctgttcgcgt tggctgtcgc ggaggtgcac gggatccggc tagtggacct
     3781 cgagcgccgc cggactctcc tgctcgccgt cgttctgggt gacaacggtg ccatgctcgt
     3841 ggagaaggtg accggtcgag cggatcagca ctgggcggac ctgctgcccg aagcgatacc
     3901 gctgtcctcg atcaccgcgg tcaacaaggc cctcggccgg tggtttttcc gcaaatatgc
     3961 ccgtaagcag ggattcctgg ctctcggccg gctcgcgccg ttcggtatcg gcgcggcgat
     4021 cggggccgcc ggcaaccgtg cgttcggccg cacggtggtg accaccagcc gacgcgtctt
     4081 cggccctccg ccactgggtt tcacggatga ccgcgacgta atgatcatca acggtgccgt
     4141 tgactgaaag ttcgcaatca gctcatgatc acgttgaggg catcgtcccg acaacgacga
     4201 aggtagcgcc gtgcgggtcg gtgattcccg ccatccgtcc gtacggcgtg tcgaacggct
     4261 cggccaggat ggtgccgccg gccgctttgg cgctggccgt cgcggcgtcg gcgtcggcgt
     4321 cgggcaccat gaaataggca agccagtgtg gcggagtgcc ctccggggcg cccatcatcc
     4381 cgccgatgcc accgaccggc tcgccgtccc tagccgcgtc gaagtgaatg ctcgtgtagt
     4441 ccggcggcgc accctcgatg tgctcgtagc ggtagccgaa gactgcggcg tagaacgtgc
     4501 ggccagcgtc cggatcgggt agccgtgcgt cggtccagac cagcgaccct ggttccatgt
     4561 agatctccac accatgcgtc ccggcggctt gccacacgcc gaaggccgca ccgagcgagt
     4621 cctgcgctat gcacatccgc ccgttgccag ggatatcgaa cggctccgcc agcactgtcc
     4681 cgccgttgtc aacgatcagc tttgcggtgc cgtcggcgtc gtcgctggcc aggtagacag
     4741 tccacgccgt gggctgatcc tcggcctgac acggaccgat ggcggccgcg gcgcggccat
     4801 cgacctggca gatctggtaa ttcccgaact ccgctccgct gtcgaggaga tcgtgggtgg
     4861 gcgggtgggt tggcgggcgg gtccttggct agggagatcg acatctgccg gtgaagcaac
     4921 gcggtcggcg tcaggtcgtt gtgctagagc acagcgaacc aggagagcat gatcgcgaac
     4981 tggtaaggag acctgatggg cggatcttcc acaggcttac tctgctataa gccggagggg
     5041 caggaggaat tcaacctcga gacgttcttt cgagaaggaa tcgctcaggc gttgcgggga
     5101 aaggcccgac tcaacgttat gcttgccggt cgcgtcggtg tcgggaaaag cacgctggtc
     5161 aacgccattt tcggggagcc gatcgctccc accggtgtcg ggtcttccat cactcagacc
     5221 attcagcgtt acgctaggcc gaacctcccg atctcggtgt acgacacccc cggtatcgag
     5281 ctcggcgtag agcccgagct gctggcgaaa acgtacctga ccgagatcag ggcccagatg
     5341 ggcgacgacg ccacccgagt tcacttctgc ctctactgcg tccggaccag ggatgaacgt
     5401 ttcgaggctg tggagtcggg gatcgtgcgc gcgctggcga aggacgtgct ggtggccctg
     5461 gtgctcaccc agtgccccac ccccgatgat gcccgagcca acaacttcgc tcgctatctc
     5521 aggtcacttg atcttcccgt cctggacggc caatgcttca tgacacttgc cgaagaagac
     5581 aatgtcgctg gggtgaagtt gcccccctac ggccttcctg atctcgtcag ctcggtttac
     5641 catcagctgc cggatgcgga gcggcatacg ttggccagtt gtcagcgggt atcgctagag
     5701 ctcaagattg ccgaagcgaa gcgattggtg aacttcaata ctggcacggc tgcattgatc
     5761 gctgctactc cgatccccct tgttgatgct attccactga gcgccttgca aatcagcatg
     5821 ttgggtcaga ttgccacgat catgggattc aaggtcgacc ccagagccgt cgccaccgcc
     5881 ttcgcgacgg tccttggggt gggttctgcg gcgcgaacag cggcaagctt cttcaagatc
     5941 ttcccaggta ctggaacaac gatcaatacc accattgcat ccaccacgac gaagatattg
     6001 ggagaagtat tcatcacagc atgcacgaac gtgctgatgc gtcagatggc tggggcccag
     6061 ataaatcagg acgacattgt gggtgagctt ctccgggagc ttccactcct gctcaaccga
     6121 gccctccgcc agtcgctgta gtagtcttca gcccctgggg tggtgggatt taaacacgac
     6181 gttggtccag ccttcctcgt ggatgtcgaa atgccggtag gactccagcg tttcgtcgag
     6241 gctgaggttg tgcgagactc actggcttgg agagctgcga agagcggcgc acacagaagt
     6301 acagctcgcg cacggtgcgc cgcaagaccc taccgtggcg ccggcagact gtacctggga
     6361 tgagtgggct tgtgtggcga gacgctgctt ctcctcatcg gtcaggtgat cgaactcttg
     6421 ggcgatgccg gcgaagacga cgttgctgaa tgctgccgtg ccggatgcct ccatcaggct
     6481 gcaccgcccg gctagaacgt cgtcgatcag cgcgcggaag gcgtcgtc
//
LOCUS       DASVXZ010000538         2689 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_865478, whole genome shotgun sequence.
ACCESSION   DASVXZ010000538 DASVXZ010000000
VERSION     DASVXZ010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_865478"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..1482)
                     /locus_tag="VF788_11165"
     CDS             complement(100..1482)
                     /locus_tag="VF788_11165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HEX8934726.1"
                     /translation="MMTLVGVLYIVAFALFIYGLMGLTGPRTAVRGNLIAAAGMGIAV
                     LATLLIPGMSNWALIVLGVVLGTALGVPAAKQVKMTQMPQMVALFNGVGGGAVALIAW
                     VEFNSTGGFAEEPAYVMVASLFGAIVGSVSFWGSLVAFGKLQELIPGRPISLGKPQQL
                     VNALVLLAALACAIAIGFGNHSQLLIIGTLLFAAALGLLVVLPIGGADMPVVISLLNA
                     LTGLSAAAAGLALNNTAMIVAGMIVGASGSILTNLMAKAMNRSIPAIVAGGFGGGSLA
                     PGRELGDKTHRETSAADAAVQMAYANQVVVVPGYGMAVAQAQHAVKDMARLLENKGVE
                     VKHAIHPAAGRMPGHMNVLLAEADVPYEQLKEMDEINGEFNRTDVALVIGANDVTNPA
                     ARSDPNSPIHGMPILNVDESKSVIVLKRSMNPGFAGIENELYYSPGTAMLFGDAKSSV
                     ESVIEELKAL"
     gene            complement(1479..1796)
                     /locus_tag="VF788_11170"
     CDS             complement(1479..1796)
                     /locus_tag="VF788_11170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004560323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEX8934727.1"
                     /translation="MLLANLAILVLAGFVGFAVISKVPNTLHTPLMSGTNAIHGIVLL
                     GGIVVLGLGHDLSAFDKLLLVVAIAFGTINVVGGFLVTDRMLGMFKGKQPARATAKAT
                     EQR"
     gene            complement(1796..>2689)
                     /locus_tag="VF788_11175"
     CDS             complement(1796..>2689)
                     /locus_tag="VF788_11175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEX8934728.1"
                     /translation="DVVVKVAPPTDEEISRLRRGAVLIGFLAPRSDPEIATKLREAGV
                     TAFAMESIPRISRAQSMDALSSQANVAGYKAVLLAAELSTRFFPMLTTAAGTVKPATA
                     LILGVGVAGLQALATAKRLGARTTGYDVRPEVADQVRSLGAKWLDLGIEAAGEGGYAR
                     ELTEDERAEQKQRLTEATSSFDIVITTALVPGRKAPILVTAEAVKGMRPGSVIVDLAG
                     ETGGNCELTEPGEVVVRHDVTIASPLNLPATMPEHASELYARNVQSLLELMVDKEGRL
                     RPDSDDEVLVRSCITREGDNS"
BASE COUNT          442 a          916 c          885 g          446 t
ORIGIN      
        1 cggcggaggc gacagagcgt ggacgcgacc gcgacacggc ctacctgagg gcgcgacaca
       61 ccgggcacgg gagcgcgaca cgccagcttg aggcgctcgc tagagcgcct ttagttcttc
      121 gatgacggat tcgaccgatg atttggcatc accgaagagc atggcggtgc cgggggagta
      181 gtacagctcg ttttcgatgc cggcgaagcc ggggttcatt gagcgtttga gcacaatcac
      241 cgatttgctc tcatcgacgt tgaggatcgg catgccgtgg atcggtgagt tcggatcgct
      301 gcgggcggcc gggttggtga cgtcgttggc gccgatcacc agagcgacgt cggttcggtt
      361 gaactcgccg ttgatctcgt ccatttcctt gagctgctca taaggcacgt cggcctcggc
      421 gagtagcacg ttcatgtgcc cgggcatccg gccggccgcc gggtggatcg cgtgtttgac
      481 ctcgacgcct ttgttctcca acagcctggc catgtccttc acggcgtgct gcgcctgcgc
      541 caccgccatc ccgtacccgg gcaccaccac gacctggttg gcgtaggcca tctgcaccgc
      601 cgcgtcggcc gcgcttgtct cgcggtgggt cttgtcgccg agttcgcgcc cgggggcgag
      661 gctgccgcca ccgaacccgc cggccacgat cgccgggatg gatcggttca tcgccttggc
      721 catcaggttg gtcaggatcg aacctgacgc gccgacgatc atgcccgcga cgatcatcgc
      781 ggtattgttc agggccagtc cggcggccgc cgcggagagc ccggtcagcg cgttgagtag
      841 cgagatcacc accggcatgt cggcgccgcc gatcggcagt acgaccagca gccccagtgc
      901 tgcggcgaac agcagtgtcc cgatgatcag cagctgcgag tggttgccga acccaatcgc
      961 gatcgcgcag gccagcgcgg ccagcagcac cagtgcgttg accagttgct ggggtttgcc
     1021 caagctgatc gggcggccgg ggatgagttc ctgcagcttg ccgaaggcca ccagggatcc
     1081 ccagaacgac accgaaccga cgatcgcgcc gaacagcgag gcaaccatca cgtaggcggg
     1141 ttcctcggcg aacccgccgg tgctgttgaa ctccacccag gcgatcagcg cgaccgcgcc
     1201 accgccaacg ccattgaaca gcgccaccat ctgcggcatc tgagtcatct tcacctgctt
     1261 ggcagccggt accccgaggg ccgtgcccaa gaccacgccc agcacgatca gcgcccagtt
     1321 gctcatcccg gggatgagca acgtcgccag caccgcgatg cccattcccg ccgccgcgat
     1381 caggttgccc cgcacggccg tgcgcggccc ggtcaggccc atcagaccgt agatgaacag
     1441 cgcgaaagcg acgatataga gaactccgac cagggtcatc atcgctgctc ggtggccttc
     1501 gctgtggccc tggccggttg cttgcccttg aacatgccca gcatccggtc ggtgaccagg
     1561 aagccaccga ccacgttgat ggtgccgaac gcgatcgcca ccaccagcag cagcttgtcg
     1621 aacgccgaga ggtcgtggcc caggcccagc accacgatgc cgccgagcag cacgatgccg
     1681 tggatggcgt tggtgcccga catcagcggt gtgtgcaggg tgttgggcac tttggaaatc
     1741 accgcgaagc cgacgaatcc ggccagcacg aggatcgcca agttggcgag cagcatcagc
     1801 tgttgtcccc ttcccgggtg atgcaggagc gcaccagtac ttcgtcgtcg gagtccggcc
     1861 tcaaccggcc ctccttgtcc accatcagct ccagtagcga ctgcacgttg cgcgcgtaca
     1921 gctcgctcgc gtgctcgggc atggtggccg gcaggttcag tggtgatgcg atcgtcacat
     1981 cgtgacggac cacgacttcg cccggctcgg tgagctcgca gttgccgccg gtctccccgg
     2041 ccaagtcgac gatcacgctg ccgggccgca tccccttcac cgcctcggca gtgaccagaa
     2101 tgggggcctt gcggccgggg accagcgcag tggtgatcac gatgtcgaaa ctgctggtcg
     2161 cctcggtcag ccgctgcttc tgctcggccc gctcgtcctc ggtcagctcg cgggcgtagc
     2221 caccctcgcc tgccgcctcg atgcccaggt cgagccattt cgcgcccagc gagcgcacct
     2281 ggtcggcgac ctcgggccgg acgtcgtaac cggtggtcct ggccccaagg cgcttggcgg
     2341 tagccagggc ctgaagcccg gccaccccga cccccaggat cagcgcggtc gctggcttca
     2401 cggtgccggc ggcggtggtg agcatgggaa agaaccgggt ggacagctcc gcggccagca
     2461 gcaccgcctt gtagccggcc acgttggcct gcgaggacag cgcatccatc gactgcgcgc
     2521 gggagatccg ggggatcgac tccatggcga aggcggtgac acccgcctcg cggagcttgg
     2581 tggcgatctc cgggtctgac cggggtgcca ggaacccgat tagcacggcg ccgcgacgga
     2641 gccggctgat ctcctcatcg gtcggcggcg ccactttgac gacgacgtc
//
LOCUS       DASVXZ010000539         2275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_926091, whole genome shotgun sequence.
ACCESSION   DASVXZ010000539 DASVXZ010000000
VERSION     DASVXZ010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926091"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..679
                     /locus_tag="VF788_11180"
     CDS             <1..679
                     /locus_tag="VF788_11180"
                     /inference="COORDINATES: protein motif:HMM:NF037284.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934729.1"
                     /translation="IQATLDNAGVGRGRVVVVLVGGASGMDEKDLDMLTVVLREAVLP
                     TLERYDAVVVDGGTDAGVMRLIGQARAATGGQFPLVGVAAEGTVVVPGDGPTSADAAP
                     LEPNHTLFLLVPGTEWGDEAPWITQVAGVIAGSQPSVTLLVNGGQIAYTDVAGSLDSG
                     RPVVVLAGSGRTADAIAEARAGRGGDPRAVEIAASPLTMIADIREAGAVAAAIDAALA
                     NPERRPL"
     gene            1374..1613
                     /locus_tag="VF788_11185"
     CDS             1374..1613
                     /locus_tag="VF788_11185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934730.1"
                     /translation="MISFDRLGKLHADAAPYLSEAVLYWDEIDPQADLTAEVGQAEEV
                     LRTENGQRGQLVVESTPARAPAAGAHDLGQALGDT"
     gene            1637..>2275
                     /locus_tag="VF788_11190"
     CDS             1637..>2275
                     /locus_tag="VF788_11190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934731.1"
                     /translation="MPFGTKKIDSAKRGVPPEVDFNALWANVHQPVLKELGYRAVRAD
                     ADLGALIINEMVQRLAIADLIVADISLPNANVYYEIGVRHAARRDGCVLVAAAWATPV
                     FDLAQMRRLPYPLADGTCGVETTGQAREALRAGLEDLIPGQSPVFAAVPGYPRTDDPT
                     NGSAFEELVDALSGFQADVAMIRNAVNADTRRKRTLTLLADYGSQPAVRDTVA"
BASE COUNT          363 a          703 c          792 g          417 t
ORIGIN      
        1 gatccaggcc acgcttgata acgccggtgt agggcggggg cgagtggtcg tcgtgctggt
       61 cggcggggcg agcgggatgg acgagaagga tctcgacatg ctcaccgtgg tgctgcgaga
      121 agcggtcctg cctacccttg aacggtatga cgccgtggtg gttgacggtg gcaccgatgc
      181 cggcgtgatg cgattaattg ggcaggctcg agcagcaacg ggaggtcaat tccctctcgt
      241 gggagtcgcg gcagagggta cggtcgtcgt tccaggcgat gggcccacct ccgccgacgc
      301 tgccccgctg gagccgaacc acactctttt cctcttggtg ccggggacgg agtggggtga
      361 cgaggcacct tggatcaccc aggtggcggg agtcatcgcg ggcagccagc cctcggtcac
      421 cctgctagtc aacggcgggc agatcgccta caccgacgtc gccggcagtc tggacagtgg
      481 tcggccggtg gtggtgctcg ccggcagcgg gcgcaccgcc gacgccatcg ccgaagctcg
      541 ggcgggccgc ggtggcgatc cgcgcgccgt cgagatcgcg gcgtcgccgc tgaccatgat
      601 cgctgacatt agggaagccg gtgcagtcgc tgctgccatc gatgcggctc tcgccaaccc
      661 ggagcggcgg ccgctgtaat ggcgtcctgc tggcccggct accgccgatg agtgctcccc
      721 gaatgtcgtc ttcgattgtt ttttgagaca cagcgccgca gcggagccta cgctgagggc
      781 ggcgaatact attcacccag tagtaaggca tgaagtcgtt gcgtaacgag gtgcgccaca
      841 gctgatcctg ctagtcgacg cgacccaccg atttgtcgtc ggtgcggcaa cccgccaacg
      901 atttgagagc tgctcggtga ccggggctac gaccatgctg atttcggtct aatgggcttc
      961 gtcccagccc gctaggacgt gtctattgag gctctgagct gcgagtacgc gccgtatgga
     1021 ttgtgccgtg tggactggtc gcgccgcgtc cggtgactcg ctgagggtga tcgcctgcgg
     1081 gcgcgtatgc catgagcagc tgtagtggtc gtggtggttg tcgccggcgt tgccatcgcc
     1141 tagcgtcatc tccagtctgg atcaaagaga gacgggctga ggtacttggt gtcgtggacc
     1201 gccgcgccgt gtgtttcttg agtcataccc tcggcgttgc gttggctttc ttccggcggg
     1261 tcgttcatag gtgcggtgga acaggcagtg gacctggctc accatgcggt caccgacatg
     1321 gcgtaccgac cgtcctggct agtctcgcgg cggcgctcac cgggatcgag gtggtgatca
     1381 gtttcgaccg gctggggaag ctccacgcgg acgcggcccc ttacctgtct gaggccgttc
     1441 tgtactggga cgagatcgat ccgcaggcgg acttgacggc cgaggtaggt caggctgagg
     1501 aggtcctccg taccgagaat ggtcagcggg ggcagttggt cgtcgagtcc acgccggcga
     1561 gggctccggc tgcgggggct cacgacctcg gtcaggccct gggggatacg tgacgacacc
     1621 gatcgcattt atggtgatgc ctttcgggac gaagaaaatc gactcggcga agcgaggggt
     1681 tccgccggag gtcgacttca acgcgctgtg ggccaacgtg caccagcccg tgctcaagga
     1741 actcgggtac cgcgcagtcc gggctgacgc agacctcggc gcactgatca tcaacgagat
     1801 ggtgcagcgg ctcgccatcg ccgacctcat agtcgccgac atctccctgc ccaacgccaa
     1861 cgtgtattac gaaatcggtg tccggcatgc cgcccggcgc gacggctgcg ttctcgtcgc
     1921 ggcggcctgg gccacaccag tgttcgacct cgcgcagatg cgccggctcc cctatcccct
     1981 ggcggatgga acctgcggcg tcgagacgac cgggcaggct cgggaggcgc tgcgcgccgg
     2041 cctggaagat ctgatcccgg gacagtcgcc cgtgttcgcc gcggtgcccg gctacccgcg
     2101 caccgacgat cccacgaatg ggtcggcatt cgaggaactc gtcgacgcgc tctcgggatt
     2161 ccaagcagac gtcgccatga tcaggaacgc ggtcaacgcc gataccaggc gcaagcggac
     2221 gctcaccctg ctggcagact acggctccca gcccgcggtc agggacactg ttgct
//
LOCUS       DASVXZ010000540         6665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_327368, whole genome shotgun sequence.
ACCESSION   DASVXZ010000540 DASVXZ010000000
VERSION     DASVXZ010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6665
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327368"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..517)
                     /locus_tag="VF788_11195"
     CDS             complement(<1..517)
                     /locus_tag="VF788_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX8934732.1"
                     /translation="MDIILDNIGLYRDGLLTTLQICFYAGIGSLVLGTLIATFRVAPF
                     PPLRATGTAWVTVFRNCPLTVVLFFCAFGLPELGIHGAYFWFGVTGLVLYTSAFVCEA
                     VRSGINAVSSGQAEAARAVGLTFLQSLREVVLPQALRSAVPPLGSVMIAMVKNSAIVG
                     AFGVGGDLFSVQ"
     gene            complement(531..1424)
                     /locus_tag="VF788_11200"
     CDS             complement(531..1424)
                     /locus_tag="VF788_11200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX8934733.1"
                     /translation="MRWKAVLKLGAALAALAVAGAGCGQQQDLGGGGSTPSVAQGARF
                     EPGTTMAKIAAAHTIRIGTKFDQPLFGQQALGGKLSGFDTEVGRIIAGALGIAPDQVQ
                     WVESPSAQREELIKQGKVDLVVATYTINDKRRQQVSFAGPYYIAGQSLMVKSDNNSIT
                     GPDSLRSTKARVCSVQGSTPAENIRKYIDPNQLTVFDVYSKCADALRTGQVDVVTTDN
                     VVLLGFVANSNGGFKLAGGTFTKEPYGIGIPKGDVAFCTFINNTLAQAAKSGAYAEAW
                     KMTAGKVATQTPELPTPDPCS"
     gene            complement(1481..2209)
                     /locus_tag="VF788_11205"
     CDS             complement(1481..2209)
                     /locus_tag="VF788_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003857431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEX8934734.1"
                     /translation="MIRMVGVQKHFGSLHVLRDINLEVARGEVVVVLGPSGSGKSTLC
                     RTINRLEPIDGGSIEIDGSLLPEEGRALARLRADVGMVFQQFNLFAHKTIAENVELAP
                     VRVRRIGKREAHETAMWLLTRVGIVDQADKYPAQLSGGQQQRAAIARALAMRPKVMLF
                     DEPTSALDPEMVQEVLDVMTSLAAEGMTMLVVTHEMGFARRAAHRVVFMSDGDILEDS
                     PPERFFTDPRSVRAKDFLGKILTH"
     gene            2385..3842
                     /gene="miaB"
                     /locus_tag="VF788_11210"
     CDS             2385..3842
                     /gene="miaB"
                     /locus_tag="VF788_11210"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003054405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEX8934735.1"
                     /translation="MPVSTEQRPRSYRVRTYGCQMNVHDSERLAGLLEAAGYVPAGQH
                     ATPDVVVLNTCAVRENADNRLYGNLGQLRPIKLEHPGMQIAVGGCLAQKDRGEITRRA
                     PWVDVVFGTHNIGSLPVLLERARHNDAAQIEIAVSLEVFPSALPAKRDSAHSAWVSIS
                     VGCNNTCTFCIVPALRGKEVDRRPGEVLAEIQALVAEGVLEVTLLGQNVNAYGVGFGD
                     RHAFGDLLRACGRIQGLERVRFTSPHPRDFTSDVIAAMAATPNVCHQLHMPLQSGSDA
                     ILAAMRRSYRAHRYLGIVEEVRAAMPDAALSTDIIVGFPGETETDFQATLDVVRQARF
                     AQAFTFQYSRRPGTPAADMAGQLPKAVVQDRYERLVALQEEISWELNRGLVGSVVEVL
                     VSEGEGRKDAATHRMSGRARDGRLVHFEPAGIEVRPGDVVLAQITYGAPHHLVSGVAL
                     RAHRRTAAGEAWAVGRRPTTPGVVLGLPSFGRPSA"
     gene            3839..4309
                     /locus_tag="VF788_11215"
     CDS             3839..4309
                     /locus_tag="VF788_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934736.1"
                     /translation="MTPDPEGIAGLRAEIDAVERSTLRQVDPGGRAVVISAAIMVLLL
                     AVTLPWVGQASGWDVLSGAANPVDRVGLLPRMFGGVALGLGVGLSVLALVTRRWGLVW
                     ASALGCTYCVLDGVWAIWSRQTVHGPGPGIGLVLAVLAITVLAVQWLRLALSRQ"
     gene            complement(4321..5616)
                     /locus_tag="VF788_11220"
     CDS             complement(4321..5616)
                     /locus_tag="VF788_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010695221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF349 domain-containing protein"
                     /protein_id="HEX8934737.1"
                     /translation="MTEQDHTGQYLETGSSAGPPPGVARACRDPQRWGRIAPDGTVYT
                     HTADGEIAVGSWQAGTAEEGLAHFARRFDDLLTEAELLHTRLSSGVGDPKQVLARVRS
                     LRDELVKPAVVGDLAGFIALLDHLQRHAEESLAGAKAARERAKARATARKEALAEEAE
                     QIGAESTQWKAGGDRLRSILDEWKTIKGADRKADEALWRRFSKARDAFARRRGAHFAE
                     LDRQRIGARTRKEELVVEAEKLASSTDWGATASRFRNLMAEWKAAGRAPKEADDALWQ
                     RFRTAQESFFSARSAAFSGRDSEMERNVIQKQELLAAAERIDPTGDIEAARAQLRGIQ
                     ERWETVGKVPRERVKELEARLRAVEERVRSAAHSQWRHVDPESEARVAQFRERVEQYE
                     AQAAKARAAGDERRASTAQAQADQWREWLAAAERAVTSR"
     gene            5785..6522
                     /locus_tag="VF788_11225"
     CDS             5785..6522
                     /locus_tag="VF788_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934738.1"
                     /translation="MIVRVAVVPHPPLLVPELAAGAAAETAPLRNACLTVARALAQRC
                     PRWVAVAVADPAAMTGGRGSFAGYGVDVQVILDPQGVVAGRVELPLPLLIAGWLREQV
                     CAAHVTMVVLPVPPGSSTAQCRRIGTELAQRLQRESAPVGLLVLGDGAATHTLRAPGY
                     LDCRAEGLDAAVAAALAAADPGALLDLDATLTSELLVSGREAWQVAAATAQSLAPAYR
                     GQLLYSAAPYGVAYHVALWDAVEADSP"
     gene            6534..>6665
                     /locus_tag="VF788_11230"
     CDS             6534..>6665
                     /locus_tag="VF788_11230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl transferase family protein"
                     /protein_id="HEX8934739.1"
                     /translation="MNSPMGPPVLAVVGPTGTGKSELAVKLAYQLGGEVVNADAMQLY
                     "
BASE COUNT         1018 a         2159 c         2264 g         1224 t
ORIGIN      
        1 cctgcacgct gaacaggtcc ccgccgaccc cgaaagcacc gacgatggcg gagttcttca
       61 ccattgcgat catcacgctg cccagtggcg gtaccgcgct gcgcagcgcc tgtggcaata
      121 cgacctctcg cagcgactgg aggaaggtca ggcccaccgc ccgagcggcc tcggcctgtc
      181 ctgacgacac cgcgttgatt ccgctgcgca cggcttcgca cacgaaggcc gaggtataaa
      241 gcaccagacc cgtgacgccg aaccagaaat aggcgccgtg gattcccagc tcgggcagcc
      301 cgaaagcgca gaagaacagc accacggtga gcgggcagtt gcggaacacc gtcacccagg
      361 ccgtccctgt tgcccgcagc ggcgggaacg gggcgacccg gaacgtggcg atcagcgtgc
      421 ccagcaccag cgacccgatg cccgcgtaga aacagatctg cagggtcgta agaaggccat
      481 cgcggtaaag gccgatgttg tcgaggatga tgtccactgg cgttgcggag tcagctgcag
      541 ggatcggggg tcggcaactc aggtgtctgc gtggctacct tcccggccgt catcttccac
      601 gcctcggcgt acgcgccgga cttggcagct tgggcgagcg tgttattgat gaacgtacag
      661 aacgcaacat cacctttggg gatgccgatg ccgtagggct ccttggtgaa ggtgccaccg
      721 gccagcttga agccgccatt gctgttggcc acgaatccca gcagcaccac gttgtcggtg
      781 gtcaccacgt cgacctgacc ggtgcgcagc gcgtcggcgc acttggagta gacatcgaag
      841 accgtcagct ggttgggatc aatgtacttg cggatgttct ccgccggggt cgaaccctgc
      901 accgagcaca cccgggcttt ggtgctgcgt agcgagtcgg gcccggtgat ggaattgttg
      961 tcggacttga ccatgaggga ctgcccagca atgtagtagg ggcccgcaaa gcttacctgc
     1021 tgacggcgct tgtcattgat cgtgtacgtc gccacgacta gatcgacctt gccctgtttg
     1081 atcaactcct cgcgctgcgc cgagggtgac tccacccact gcacctggtc gggcgcgatc
     1141 ccgagcgcgc cggcaatgat tcgcccaact tcggtgtcga acccgctgag cttgccgccc
     1201 agcgcctgct ggccgaacag cggctggtcg aacttggtgc cgatccggat ggtgtgggcc
     1261 gcggcgatct tggccatcgt ggtgcccggc tcgaaacggg cgccttgggc gaccgatggt
     1321 gtcgacccgc cgcctccgag atcctgctgt tgcccgcacc cggctcccgc cacggcgagt
     1381 gcggccagcg ccgcccccag cttgagtacg gccttccagc gcattcgcta ctcctcatgt
     1441 catcggaggt gatagttggt agggatccgg agatgagccg tcagtgcgtc aagatctttc
     1501 cgagaaagtc cttggcgcga accgagcgtg gatcggtgaa gaaccgttca ggcggtgagt
     1561 cctcgaggat gtccccatcg gacatgaaca ccacccggtg cgccgctcgg cgggcgaaac
     1621 ccatctcgtg cgtcaccaca agcatggtca tgccctctgc cgccagtgat gtcatcacat
     1681 caagcacctc ttggaccatc tccgggtcca gcgctgaagt gggttcatcg aagagcatca
     1741 ccttgggccg catggcgagt gcgcgggcga tcgcggcccg ctgctgctga ccaccggaga
     1801 gctgtgcggg gtacttgtcg gcctgatcga cgatcccgac ccgggtaagg agccacatcg
     1861 cggtctcgtg cgcttcccgc ttaccgattc gccgcacccg caccggggcg agctcgacat
     1921 tctctgcgat ggtcttgtgt gcaaagagat tgaactgctg gaacaccatg ccgacatcgg
     1981 cccgcagccg ggccagcgcg cggccttctt cgggaaggag cgatccgtcg atctcaatgc
     2041 tgccgccgtc gatcggttcc agtctgttga tcgtgcggca cagcgtcgac ttgccggacc
     2101 cggacggccc gagcacaacg accacctccc cgcgcgcaac ctccaggttg atgtcgcgca
     2161 gcacgtggag cgagccgaag tgtttctgaa ctcctaccat ccggatcatt ggcgggtcgg
     2221 ttttcgcggg cgagcccatc ggcgaatcct ccgggtgggt gagggcgtcg gagtcatcct
     2281 taccatgagg atccatgcgg accaccatcg gtggtatggg ggtagccccc accgtgtata
     2341 cgactcggtc ttacgctgtg cgggtaagga aggatgatca gtcgatgccg gtgagcaccg
     2401 agcagcgtcc acgcagctac cgcgtgcgta cctacggttg ccagatgaat gtgcacgact
     2461 ccgaacggct ggccgggctg cttgaggccg ctggctacgt tcccgccggg cagcacgcta
     2521 ctcccgatgt ggtcgtgctc aacacctgcg ctgtgcggga gaacgccgac aaccggctct
     2581 acggcaatct aggccagcta cgcccgatca agctcgagca ccccgggatg cagatcgccg
     2641 tcggtgggtg cctggcccag aaggaccgcg gcgagatcac ccggcgggcg ccctgggtcg
     2701 acgtggtgtt cggcacgcac aacatcggct cgctgccggt cctgctggaa cgggcccggc
     2761 acaacgacgc ggcccagatc gagatcgccg tgtcgctgga ggtgttcccg tctgcgctgc
     2821 ccgccaagcg ggactcggcg cactccgcat gggtgtcgat ctcggtgggg tgcaacaaca
     2881 cctgcacgtt ctgcatcgtg cccgcgctgc gcggtaagga ggtcgaccgg cggcccggcg
     2941 aggtgctcgc ggagatccag gcgctggtgg ctgagggtgt gcttgaggtg acactgctag
     3001 ggcagaacgt caacgcctat ggggttgggt tcggggaccg ccacgccttt ggcgacctgc
     3061 tgcgtgcctg cggccgcatc caaggtttgg agcgggtgcg cttcacctca ccccacccac
     3121 gggacttcac ctcggatgtc atcgcggcga tggccgctac cccgaatgtc tgccaccaat
     3181 tgcacatgcc gctgcagtcc ggttcggacg cgatcctggc agcgatgcgc cgctcctacc
     3241 gcgcgcatcg ctatctcggg attgttgagg aggtgcgggc cgcgatgcct gacgcggccc
     3301 tgtccacgga catcatcgtt ggattccccg gggagaccga gaccgacttc caggccacct
     3361 tggacgttgt gcgccaagcc cgcttcgctc aggccttcac gttccagtac tcccggcgcc
     3421 cgggcacacc ggcagcggac atggctggtc agttgcccaa ggcggtcgta caggaccgct
     3481 atgagcggct cgtcgcgctg caggaggaaa tctcctggga gctcaaccgg ggtctggtcg
     3541 gtagcgtggt agaggtgctg gtttctgaag gcgagggccg caaggacgca gccacccacc
     3601 ggatgagcgg acgggccaga gacggtcggc tagtgcactt cgagccggct gggatcgagg
     3661 tccggccggg cgacgtggtg ctcgcacaga tcacctatgg cgcgccgcac cacctcgtat
     3721 cgggggtggc gttgcgcgca caccggcgga ccgctgcggg cgaggcctgg gcggtcgggc
     3781 ggcgcccgac gacaccggga gtggtgctgg gcttgccatc gttcggtcgg ccgtcggcat
     3841 gacccccgat ccggaaggca tcgccgggct gcgcgcggaa atagacgcgg tggagcgttc
     3901 gacgttgcgt caggtcgatc ctggcggtcg cgcggtggtg atctccgctg cgatcatggt
     3961 gctgctgctg gccgtcacgt tgccgtgggt ggggcaggcc agcggctggg acgtgctgag
     4021 cggcgcggcc aacccggttg accgggttgg gctgctgccc cggatgtttg ggggagtggc
     4081 gctggggcta ggggtcggct tgtccgtgct agcgcttgtc accagacgct ggggcttggt
     4141 ctgggctagt gcgttgggct gtacctattg cgtgctcgat ggtgtgtggg cgatctggtc
     4201 ccggcagacg gtgcatgggc ccggccccgg catcgggctg gtgctggctg tgctggcgat
     4261 taccgtgctg gctgtgcagt ggctgcggct cgcactgtcc cgccagtagc cagctgcccg
     4321 tcaccggctg gtgacagctc gttcggcggc ggccaaccac tcgcgccact gatcagcctg
     4381 ggcctgtgcg gtgctcgctc ggcgctcgtc tccggcggcg cgggccttgg ccgcctgagc
     4441 ctcgtactgc tccacccgtt cccggaactg cgctactcgc gcctcggact cggggtcgac
     4501 gtgtcgccac tgggaatggg cagctgagcg gactcgctct tcgacggccc gcaatcgagc
     4561 ttcgagctct ttgacgcgct cccgcggaac cttaccgacg gtctcccagc gctcctgaat
     4621 tcctcgcagc tgtgcgcggg cggcctcgat gtcaccggtg ggatctatcc gttccgcggc
     4681 ggcgagtagc tcctgcttct gtatcacatt gcgctccatc tccgagtcgc gcccggaaaa
     4741 cgccgcggaa cgagcgctga agaaggactc ctgggcggtg cggaaccgtt gccacaacgc
     4801 gtcgtcggct tccttggggg cgcgtccggc tgccttccac tccgccatca ggttccggaa
     4861 gcgactcgct gtggcacccc agtcagtgga gctggcaagc ttctcggcct cgacaacaag
     4921 ctcctccttg cgagtgcggg ccccgatccg ctgccggtca agctcggcga aatgtgcgcc
     4981 gcggcgtctc gcgaaagcgt cccgtgcttt agagaatcgg cgccacaggg cctcgtcggc
     5041 cttccggtcc gcacctttga tcgttttcca ttcatccagg atgcttcgta gccggtcgcc
     5101 gccggccttc cactgggtgg actcggcgcc gatctgctcc gcttcctcag caagagcttc
     5161 tttgcgggcg gtcgctcgtg ccttggcccg ctccctggca gctttggccc cggcaaggga
     5221 ctcctcggcg tgccgctgca ggtgatccag aagcgctatg aaaccggcga ggtcacccac
     5281 gacggctggt tttacgagct catcacgcag ggagcggact cgggccagca cctgcttggg
     5341 gtcgcctacc ccagagctca gccgggtatg gagcagctca gcttcggtga gcaggtcgtc
     5401 gaagcgccgg gcgaagtgtg ccagaccttc ctcagctgtc ccggcctgcc acgaaccgac
     5461 cgctatttca ccatcagcgg tgtgggtgta caccgtgccg tccggggcta tccgccccca
     5521 gcgctgtgga tcccggcagg cgcgcgcgac gccgggtggc ggaccggctg agctaccggt
     5581 ctccaggtat tgcccagtat ggtcttgctc ggtcatgccg gccttcctcg acctcgtgcc
     5641 cgccgccgcc tcctgcgggc gccccgactg cacaagctgt gcaccttcac ggggctgccc
     5701 cgaaacgccc ggccagggcc gcattgaagc agttcacgcg cgcgggcagg gaagcaggtg
     5761 cgaagtgggc actaacctgc agcggtgatc gtacgcgtgg cggtggtgcc acatccaccg
     5821 ctgctggtac cggaattggc cgccggcgcc gctgcggaga ccgcaccgtt gcgaaatgcc
     5881 tgtttgacgg tggcgcgtgc gctcgcgcag cgttgcccac gctgggtggc tgttgcggta
     5941 gccgatccag ctgcgatgac gggtggacgg ggaagttttg ccggttatgg agtagatgtc
     6001 caggtcatcc ttgatccaca gggagtggtt gctggtcgcg tggagcttcc gctgccattg
     6061 ctgattgcgg gctggttgcg tgagcaggtc tgcgcggcgc atgtcacgat ggtcgtgtta
     6121 ccagtgccgc cgggatccag taccgcgcag tgccgccgga tcgggaccga actggcgcag
     6181 cgattgcagc gcgagagtgc tccggtgggg ttgctcgtgc tcggcgatgg cgcagcgacg
     6241 cacaccctgc gtgctccggg gtatctcgac tgcagggcgg aagggctgga cgctgcggtg
     6301 gcggcggcgc tcgccgcagc ggatcccggt gcgttgctgg acctcgatgc cacactgacc
     6361 agtgagctgt tggtttctgg ccgggaggcc tggcaggtcg cggccgccac tgcccagtcc
     6421 ctggcaccgg cctaccgggg ccagttgctc tactctgctg cgccttatgg ggtcgcctac
     6481 cacgttgcgc tgtgggatgc cgtggaggcg gactccccat gacgaatcca ggcatgaatt
     6541 cccccatggg gccgccggtt ctcgctgtgg tgggtccgac tggtacgggt aaatccgaac
     6601 tcgcggtcaa gctggcctac cagttgggtg gcgaggtggt caacgccgat gcgatgcagc
     6661 tctat
//
LOCUS       DASVXZ010000541         4664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_417327, whole genome shotgun sequence.
ACCESSION   DASVXZ010000541 DASVXZ010000000
VERSION     DASVXZ010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4664
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417327"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..564
                     /locus_tag="VF788_11235"
     CDS             64..564
                     /locus_tag="VF788_11235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX8934740.1"
                     /translation="MKLLLMTDTHVPHRAKDLPEQLWDAVDDADVVIHAGDWVCVELL
                     DALLARTDRLLGVVGNNDGPPLCARLPEIATAELDGVRVAVVHETGSTRGREQRCAAR
                     FPDTDVLVFGHSHIPWDTMAPTGLRLLNPGSPTDRRRQPTCSWMTAQIDDGQLSRVQL
                     HRPAAR"
     gene            complement(561..1742)
                     /locus_tag="VF788_11240"
     CDS             complement(561..1742)
                     /locus_tag="VF788_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 family protein"
                     /protein_id="HEX8934741.1"
                     /translation="MTLWVHPIRHGWVVADRVPGPDVDEFAEATEVTAALARSPCGTD
                     TLLAVQHPHRTPQALAEGLSLADALPAARQVLARLSASAYREVANVVAPYRVEGPDGV
                     AVGVLCLIDSAAVDSGGRSFVRHSEEVYPRMVRERAAVLAGLGCATSAAMLVPVRDGE
                     RLTTVVLGSIDKLGAPAVSTTDSGGRTHQLWLLGPGAEQDAVLAAVSSSPLLVADGNH
                     RVAAAAASDRSSLLALVTAGPVLRIGAIHRALVGTGLTCDDLADAWRAAGVMVRNAGE
                     LDLPLRPGSVVVEAAGGHLLVTLPGPDPGEPVPRIDHGLVERWLIADALGIDPEGPQV
                     RALPAGHPVNPQVDVVLRLAPVPFTDVLAVHEQGRRMPRKSTFFTPKPRSGLLLADLT
                     G"
     gene            complement(1776..2363)
                     /locus_tag="VF788_11245"
     CDS             complement(1776..2363)
                     /locus_tag="VF788_11245"
                     /inference="COORDINATES: protein motif:HMM:TIGR01926.1"
                     /note="This protein belongs to a clade of uncharacterized
                     proteins related to peroxidases such as the
                     alkylhydroperoxidase AhpD; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase-related enzyme"
                     /protein_id="HEX8934742.1"
                     /translation="MIRLPVIERGRGLRTLALRPVLRWFFGQPTPGFVKVLLYRHKFF
                     GKLVGRYGQAVLRGPSRWSVAERELFAALVSVENQCGYCAGVHGANAGVVLDAGVVDD
                     VVHGRDPGRAGPRVAVMVPFLRRLSQGADRIGPGDVVALRSAGLNDEEILDAVHAAVL
                     LEICNRVVNALGVEPMDPAQNRRAARFLMRHGYDL"
     gene            complement(2360..2743)
                     /locus_tag="VF788_11250"
     CDS             complement(2360..2743)
                     /locus_tag="VF788_11250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934743.1"
                     /translation="MLRCPLLVLGSLSPPSRGSDQVGVGKMVNLRRRRLEELADGVGG
                     DAGVLPGGVRRDLVNGQGIVGDLGVLAELVAAGGGAVTDEQIRRLLVSGHSADAVFEC
                     VVAAAAGAGLERLRAVERLLQDCPP"
     gene            2909..3451
                     /locus_tag="VF788_11255"
     CDS             2909..3451
                     /locus_tag="VF788_11255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX8934744.1"
                     /translation="MADITQLILDDHDTFRREFAALDDAEGTEQLRAIWEPLAALLDL
                     HAVAEETVFYPQLLRRGDDAEDETLDAIGDHNDIRDGVHEAARHPISSSQWWDGVRKA
                     RMANSDHMAEEEDEALADFRRNTPLSVREELGRQFLEFKSNHADARDLDTSDKDPEGY
                     VNAVSAQISSGETGSLDIGS"
     gene            3465..4286
                     /locus_tag="VF788_11260"
     CDS             3465..4286
                     /locus_tag="VF788_11260"
                     /inference="COORDINATES: protein motif:HMM:NF041155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0140737 - encapsulin nanocompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 encapsulin nanocompartment shell
                     protein"
                     /protein_id="HEX8934745.1"
                     /translation="MTDHLLRRHAPIPTAGWQQIDDEAKTRLTPKLAARRLVDWSGPH
                     GWTHSATNLGRTTTLDGTPPGTKSETVAARQRRVLPLNEFRVSFTVECSGLQDAERGA
                     TDVDYGDLDRAAYDAALIENRAIFHGWPEAGITGIAESSSHSSMNLSQDLNAYPLTIA
                     KATDVLRQAGIQGPYALAIGPQGYTRIVETIEHGGYLLQQHLMKILGGDIVWAPGLDG
                     ALVVSTRGDDFVLDVGQDFSVGYSRHDAEVVTLYLEESFSFRVNEPDAAVVLVDS"
BASE COUNT          907 a         1574 c         1443 g          740 t
ORIGIN      
        1 ccgcatgggc cactgactac gcgcacgacg gtgattggcg gtgggcatgg catcgtgcaa
       61 ggcgtgaagc tgctgctgat gacggacacc cacgttccgc accgtgccaa ggacttaccc
      121 gagcaactgt gggacgccgt cgacgatgcc gacgtggtga tacacgccgg ggactgggtg
      181 tgcgtggaac tgctggacgc cttgctggcc cggacggacc ggctgctcgg ggtggtcggc
      241 aacaacgacg ggccaccgtt atgtgcacga ctgccggaga tcgcgaccgc tgagctggat
      301 ggagtgcgag tggcggtcgt gcatgagacc ggatcgaccc gtggccggga gcagcggtgc
      361 gccgcccggt ttcctgacac tgacgtgctg gtcttcgggc acagccatat cccctgggac
      421 accatggcgc ctaccggcct gcggctgctc aacccgggat ctccgaccga ccggcgccgc
      481 cagccgacct gcagttggat gaccgcccag atcgatgacg gtcaacttag ccgggtgcag
      541 ttgcaccggc cggccgcacg ttagccggtg aggtccgcca gcaacagacc gctgcgtggc
      601 ttgggcgtga aaaaagtgct cttgcgcggc atacgccgac cttgctcatg caccgcgagc
      661 acgtcggtga aaggcaccgg agccagccgc aggacgacat cgacctgcgg atttaccggg
      721 tgccccgctg gcagagcgcg cacctgcgga ccctccggat cgatgcccag tgcgtcggcg
      781 atgagccacc gctccaccaa tccgtgatca atcctcggca ccggttcgcc tgggtccggc
      841 ccaggcagcg tgacgaggag gtggcctccg gcggcctcta ccaccacact gccggggcgc
      901 agcggtaggt ccagctcgcc ggcgtttcgc accatcactc cagccgctcg ccacgcatcc
      961 gccagatcat cacaggtcag tccggtaccc accagcgcac ggtggatcgc gcctatacgc
     1021 agcacgggtc ctgcggtcac caaagcgagc aggctggacc gatcgctggc tgccgcggca
     1081 gcaacccggt gattgccgtc ggcgaccagc agcgggctgc tcgagactgc ggcgagcacg
     1141 gcatcctgct cagcacccgg acccagcaac cacaactggt gagttcgacc accggagtcg
     1201 gtggtcgaca ccgcgggtgc tcccagcttg tcgatgctgc ccaggacaac agtggtcagc
     1261 cgctcaccgt cccggaccgg aacgagcatt gccgcgctgg tcgcgcagcc tagaccggcg
     1321 agcaccgcgg cgcgttcgcg gaccatccgc ggatagacct cttcgctgtg ccggacgaag
     1381 gacctgccgc cggaatccac tgcggccgag tcgatcaggc ataacacgcc gaccgctacc
     1441 ccgtccgggc cctccacccg atacggcgcc accacgtttg ccacctcgcg gtatgcgctg
     1501 gcgctcagtc gcgcgagaac ctgccgtgcg gcgggcaacg catcggccaa tgacaatcct
     1561 tcggccagtg cctggggagt gcgatgagga tgctgcacag ccaacaatgt gtcagtgccg
     1621 cacggggatc gggccagtgc cgctgttacc tcggtggctt cagcgaactc atcgacatcg
     1681 ggtccaggca cgcggtcggc gaccacccag ccatgcctga tcgggtgtac ccagagggtc
     1741 atcgatcccg cccattctcc tgcgggccca aggatctaca ggtcgtaacc atgacgcatc
     1801 aggaaccggg cggcgcgccg gttctgggca gggtccatcg gctcgacacc gagagcgttg
     1861 accacgcggt tacagatctc cagaagcacc gcggcgtgaa ctgcatccaa tatctcctca
     1921 tcgttcaggc cagcggaacg caacgccacc acgtctccag gaccaatccg gtcggctccc
     1981 tgggagaggc ggcgtaggaa cggaaccatc acggccaccc ggggaccggc gcgacctggg
     2041 tcacggccgt gcaccacgtc atcgaccacg cccgcatcca ggacaactcc ggcatttgcg
     2101 ccgtgcaccc cggcgcagta accgcactgg ttctcaaccg agaccagtgc ggcgaacaac
     2161 tcgcgctccg ccaccgacca ccggctcggg ccacgtaaca ccgcctggcc ataccgcccc
     2221 acgagcttgc cgaaaaactt gtgccggtag agcagcacct tgacaaagcc gggggtcggc
     2281 tggccgaaga accatctcaa caccggtctc aacgccagcg tgcgcaatcc ccggcctcgt
     2341 tcgatcaccg gaaggcggat cacggcgggc aatcctgaag gagccgctcg acggcgcgta
     2401 gccgctccaa cccggccccg gcggccgccg caacgacaca ctcgaacacc gcatccgcgc
     2461 tatgcccgga aaccagcaga cgccggatct gctcgtcggt caccgcacca ccgccagccg
     2521 cgaccagttc agccagcaca ccaaggtcgc cgacgattcc ctgtccattg accagatcac
     2581 ggcgcacgcc accaggcagc acacccgcgt caccacctac cccgtccgcc agttcctcga
     2641 gccgccgccg acgtagattc accatcttgc ccacaccgac ctggtcagat ccccgcgacg
     2701 gcggcgatag cgagccaagc acgagtagcg ggcaccgcag catcggtcac acctgagagc
     2761 ctgcctaaca ccagcgagat cggtcaacgc gagctcagca catgtgggtg cctgctcagg
     2821 gtttcgacgt cgactcccgg gggtagccga cgtcgatatg tcttaggagg agacctgaag
     2881 gcattcatcc gacgggggag cactgcacat ggcggacatc acccagctca tcttggatga
     2941 tcacgataca ttccggcggg aattcgcagc cttggacgac gccgagggca ccgagcaact
     3001 tcgtgcgatc tgggagcccc tcgcggctct cctggacctg cacgcggtag ccgaagaaac
     3061 ggtcttctac ccgcagctgc tgcggcgcgg cgacgatgct gaagacgaga ccctggatgc
     3121 gatcggtgat cacaacgata tccgtgacgg cgttcacgaa gcggcccggc atccgatcag
     3181 cagctcgcag tggtgggacg gtgtccgcaa ggcgcgcatg gccaacagtg atcacatggc
     3241 ggaggaggag gacgaagccc tcgccgattt tcggcgtaac actccgctca gtgtgcgaga
     3301 ggagctgggc cgccagttcc tcgaattcaa gtccaaccat gctgatgccc gagatctgga
     3361 taccagcgac aaagatcctg agggatacgt caatgcggta tcggcgcaga tttcttctgg
     3421 cgagaccggg tcgttggata tcggaagtta aaaggatgtt gacaatgacc gaccacctgt
     3481 tacgtagaca tgcaccgatc ccgaccgcgg gatggcaaca gatcgacgac gaggcgaaga
     3541 ctcgccttac acccaagctc gctgcccggc ggctcgttga ctggtcgggt ccgcacggct
     3601 ggacccattc cgctactaat ctcggccgga ccaccacatt ggatggaaca ccaccgggga
     3661 ccaagtccga gacggttgca gcccggcaac ggcgggttct gcccctgaac gagttccggg
     3721 tgagtttcac cgtggaatgc tcaggcctac aggacgctga acgcggtgcc accgatgtcg
     3781 actatggcga tctcgaccgt gcggcctatg atgccgcgtt gatcgaaaac cgtgccattt
     3841 ttcacggttg gccagaggcc gggatcactg gaattgccga gtccagctct cattcctcaa
     3901 tgaacctgag tcaggacctg aatgcttatc cgctcactat tgccaaagca accgacgtac
     3961 tcagacaagc aggcatccaa ggtccgtacg ctttggccat cggaccacaa ggatataccc
     4021 ggatcgtcga gaccatcgag cacgggggct accttctgca gcagcatctg atgaagatcc
     4081 tcggcggaga catcgtgtgg gctccggggc tggacggtgc gctggtggtg agcactcgcg
     4141 gcgacgattt cgtcctcgac gtcggtcagg acttctcggt tggttactcc cggcacgacg
     4201 ccgaggtcgt cacactttac ttggaagaaa gtttcagctt ccgcgtcaac gagcccgacg
     4261 cggccgtcgt tctcgtggac agttgatctg ctagtccgtt cgccatcgcg ccaggtaccc
     4321 acgaaggcac acgcccagcc cggccgctgg aacaaaccgg ttcctgcgcc ggaccgcgaa
     4381 aggatatgca ctcgcacacg acgtcgaggg catggtccgc ggtaccggac tgacccatgc
     4441 cgaagagtgg aaggacccag agccacccgc cgacgacgac tccccgttga gtacccgcgt
     4501 ggcaatcatg aaccgcggcc aagacggccc gctggattga ttagctccac ctcgcgcatc
     4561 acctcgatca tcacggttga gttcggtccg gtgctagctc agagttgtgg gggcggtggc
     4621 ggtgggggct caagcggtgg cccagggacc ggattcggtt ccgg
//
LOCUS       DASVXZ010000542         5524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_866043, whole genome shotgun sequence.
ACCESSION   DASVXZ010000542 DASVXZ010000000
VERSION     DASVXZ010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5524
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_866043"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VF788_11265"
     CDS             complement(<1..288)
                     /locus_tag="VF788_11265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934746.1"
                     /translation="MSAHSGRRSARRPVLMMSPGGLADEVTRLAAAAGCDPHRITDPS
                     TVREQWNCAPLVLLDIAAAVASANAGLPRRDGVVIICANGDPEVWQCAVAVG"
     gene            668..1474
                     /locus_tag="VF788_11270"
     CDS             668..1474
                     /locus_tag="VF788_11270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005168538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HEX8934747.1"
                     /translation="MSSSSPSSSGVAAFFDLDKTIIAKSSAFVFSRAFFQEGLINRRA
                     ILKSTYAQFMYLLAGADSEQMERMRAHITAQCTGWDIAQVTAIVEETLHDVVDPLVYA
                     EATDLIAAHRERGEDIVVVSASGVEVVQPIAKMIGATHSVATRMVTQNGRYTGGVEFY
                     CAGENKALAARQLAEEQGYEMQRCHAYSDSISDLPLLEAVGHPTAVNPDRALRKEAQQ
                     RNWPVLTFSNPVSLRTRIPAPSGAQIAAAVGLGAVAAAGVAWYGLRRRQR"
     gene            complement(1943..2674)
                     /locus_tag="VF788_11275"
     CDS             complement(1943..2674)
                     /locus_tag="VF788_11275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEX8934748.1"
                     /translation="MPADPLGPLTDLPGVQEAVIRVRDAVTAVHRHPANRRRWPATAA
                     EASVRAARASAALDGGSTALPSDGSVHDPVLAGALRVAEALGGLLGTWQRAPLQALAR
                     LHVLAAAGLASDAQLGRPDSSREVTARLDGLAQLLAGGTQVAAPVLVAVVHGELLALA
                     PFGQGNGVVARAAARLTVVSTGLDPKGLVVPEVAHLRYEREYRTAAAGFARGGAEAVG
                     EWITHCCAALTTGAREALAIAKAVT"
     gene            complement(3492..3980)
                     /locus_tag="VF788_11280"
     CDS             complement(3492..3980)
                     /locus_tag="VF788_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8934749.1"
                     /translation="MLIRDAIPEDWATIWPFLHRIVAAGETYACGRDLSEDQARKLWL
                     LEPPGRTVVAVDTDQTVLATAKVHPNHGGPGAHVATASFMVDPQHAGRGVGRALGEHI
                     LTLARAEGYRAMQFNAVVETNTRAVALWRSLGFQVLATVPEAFHHPVHGYVGLHIMHR
                     QL"
     gene            complement(4012..4629)
                     /locus_tag="VF788_11285"
     CDS             complement(4012..4629)
                     /locus_tag="VF788_11285"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934750.1"
                     /translation="MQDPEEIAATVGHNVRALRQQRRMTIDGLADASGLSRGTVIQVE
                     SARGNPSIATLCNLAVALRVGVASLVSADSAPRVTVRAAADAAALWTSATGSRALFRI
                     GTDPPDVVELWDWTLQPGDAFDGEAHPRGTMEVLFVLDGELALRVGAQARTLSVDDVV
                     VFEAHAPHCYANEADAPVRFIMVVLQFGDTGLVPPTAIAPVGPSE"
     gene            4740..>5524
                     /locus_tag="VF788_11290"
     CDS             4740..>5524
                     /locus_tag="VF788_11290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934751.1"
                     /translation="MAVQFAIPAAVGFGVADFAGGLATRRACCTLWIIAAAQLVGAAV
                     LLPALTLLPGRPSVAAVTFGALAGLAGSSGLLLYFQGLARGPMGVVAPLSALAGAGLP
                     LGAGVMAGERSGPVTLSGVAVALVAIALATAGTSRDRTAVGGLLLGIGSGVGFGLFYI
                     ALDATSPQSGLWPLLAAKVAAVAVFGSLVLARRTSGDALWARPGLIVLSGTADMMSNI
                     LFLLATRTGTLGVSAVLVSLYPVVVVILARLVLHERLTLLQAT"
BASE COUNT          891 a         1852 c         1819 g          962 t
ORIGIN      
        1 acccaccgcg accgcgcatt gccacacttc cgggtcaccg ttcgcacaga tgatcaccac
       61 cccgtctctg cgggggagcc cggcattggc gctggccacc gccgctgcga tgtcgagcaa
      121 taccagcggg gcgcagttcc actgttctcg aaccgtgctc ggatcggtga tccgatgtgg
      181 atcacatccc gctgccgctg cgagccgggt gacctcgtcg gccaatccgc caggcgacat
      241 catcagcacc ggccgccgag cgctgcgccg tccactgtgt gcactcaccg ttgcccccgc
      301 tgtggctggc cccgcactga ccggggcatg tgttctttcg gagtgccact gtggatcagc
      361 cggaccaaca gagcgaccaa gccatgatca atatgtggat aacgggggtc actgtggata
      421 acccgggaga atcccgggat ccggggacga cccccgccag gaggagacgg gggtcgccag
      481 agtgtcagcc ctggggggtt gggctgtact ccccggcttc gctagccgga gggctcaggt
      541 tacctcgcag ataccccgtc gccctacagc aaactcggtg acggccaggc gcgatcctca
      601 ccgatccggg aacccgatta cttaggcggc cgtccgacca cggacgttgc ctcatatgct
      661 gcccgtcgtg agctcttcga gcccgagctc ctcgggagtc gccgcattct tcgacctgga
      721 taagaccatc attgccaaat ccagtgcgtt cgtgttctcc cgggcgttct tccaggaagg
      781 tttgatcaac cggcgagcaa tactcaagag cacctacgcc cagttcatgt acctgctggc
      841 cggagccgat tccgagcaga tggagcggat gcgggcgcac atcaccgccc agtgcacggg
      901 atgggacatc gcccaggtca ccgccatcgt ggaggagacc ctgcacgacg tggtggatcc
      961 gctggtctac gccgaagcga ccgatctcat cgcggcgcac cgcgagcggg gggaggacat
     1021 cgtcgtggtc tccgcctccg gggtcgaggt cgtgcaaccc atagccaaga tgatcggcgc
     1081 gacgcactcg gtggccaccc gcatggtgac ccagaacggc cggtacaccg gcggcgtgga
     1141 gttctactgc gccggtgaga acaaggcact cgctgcccgc cagctggccg aagagcaggg
     1201 ctacgagatg cagcgctgcc acgcctactc cgactccatc tcggatctgc cgctactcga
     1261 ggcggtcggt catccgacag cggtcaatcc ggatcgcgca ctgcgcaagg aggcgcaaca
     1321 gcggaactgg ccggtactga cgttctccaa cccagtgtcg ttgcggaccc gcatcccagc
     1381 gccctcaggc gcccagatcg ccgctgcggt gggacttggc gccgtggcgg cggccggcgt
     1441 cgcatggtac gggttacgac ggcggcagcg ttgacagaat ggcatcaagc cgctcaacgg
     1501 gtctttgctt gctccaaaca gggcccactg cccacgtatt tctacgtacg gtagccacca
     1561 tgggggccct gatcgggcct cttgctgtgg ccggggtcac ggagtaaaca tgacggcacg
     1621 gacctctgga aggccagggg cggtgcggca gagaagtacc gtccaccccg accggggctc
     1681 cgtgcacgga cgtcgggcag cccacgcgca gcgcgccgcg ggaggcttgt cgtcaagggt
     1741 ctgcgtaccg catcctccgg ggatacgggc gccgagacca gttgagtacg acacgagttg
     1801 cacgcttggt accccggcag tccgtgcgga cggcggcgct actggaagct cgcaatgggc
     1861 gtccagcagc gccgccgtcg tatttcgccc ggatcaacgc gtcacccgct cttgactcac
     1921 gccatcgcgg tcagtcgcta ctctacgtga ccgccttggc gatggccagg gcctcccgag
     1981 ctccggtggt taacgccgcg cagcagtggg tgatccactc gccgaccgct tccgcaccgc
     2041 ccctggcgaa accggcggcg gccgtccggt actcccgctc gtaacgcagg tgggcgacct
     2101 cgggtaccac cagtcccttc gggtccaacc cagtggacac gacggtgagt cgagccgccg
     2161 ctcgtgcgac taccccgttg ccctgtccga acggggccag tgctagtagc tcgccatgca
     2221 ccacggcgac cagcactggc gccgccacct gagttcctcc agccagcagc tgggccaagc
     2281 cgtcgagccg ggcggtgact tcacgcgacg agtccggccg gcccaactgc gcatcggacg
     2341 ccagacctgc cgcggcaagc acgtgtaacc gcgccagggc ctgtagcgga gctcgttgcc
     2401 aggtgcccag cagcccccct aaggcctctg ccacccgcag cgccccggcc agcaccgggt
     2461 cgtggaccga tccatcgctg ggcaacgcgg tactaccccc gtccagcgcc gcagatgccc
     2521 gggccgcgcg cacggatgcc tcagccgcgg tagctggcca gcggcgccga ttggccggat
     2581 gccggtgtac cgcggtcacc gcgtcgcgaa cgcgaatgac ggcctcctgg actccaggca
     2641 agtccgtcag cggacccagt gggtctgcgg gcatccagcg agactagagc ctgtccagcc
     2701 agccccctca ccagccacag cggtctcgac ttctttcgat cattgtgcgc actgcacaca
     2761 tcgcctccgg catccacgtt cgttacgcac cacagcagtg atcacgctgt gagacggcga
     2821 gcgccgcccc gtcggagcta ggggtggtct cgcgggaccc gcagcgttct ccaatcccac
     2881 aatgaaggac gggctgcaat ggaccttcca tcgcgtcgcc aggtgttacg gcttggggtt
     2941 accgggattg ccatgctcgg cagcggcatg atctctatgg gaactgcgac tccggcagcg
     3001 gccgcacaag cgttgtggcg atggtgcgag cgctgtagcg gactgtggtt cgctggaaat
     3061 gccagtcggg gcaggtgtcc tgccggcgcc tcttatgatg ggggccacta cagcaccggt
     3121 agcgccaact acgtattgaa attcgcttcc gagggcggtt ctggccaatc tctttggaag
     3181 tgctgtgcga agtgccaggg tctctggtac gggggcacct cgagcttcgg atcctgctca
     3241 gggaacggtg gccggcacag ctccataacc gacaatccac cctacacctt ttctagcgac
     3301 tacctgttgg aggacgtgag tcacagagac cgccccggag gccaaaatca gtggagatgg
     3361 tgtttcaaat gcttgggtct gttctttgac ggcatttctc ccggtgcctc cgggatctgc
     3421 ccgaaagacc atgctcacca cggcctcatg ggcagcgcag actatgtact gcgccagctc
     3481 tgatagcgcg gttaaagttg acggtgcatg atgtgcagcc cgacgtagcc gtgtaccggg
     3541 tggtgaaagg cctcgggcac ggtagccagc acctggaaac cgagcgagcg ccacagcgcg
     3601 accgctcggg tgttggtctc gaccacggca ttgaactgca tagctcggta gccctcggcg
     3661 cgcgccaagg tcaagatgtg ctcgccgagg gctcgtccca cgcctcgccc ggcgtgttgg
     3721 ggatcgacca tgaaactggc agtggcaacg tgcgcgccgg gaccgccgtg gttgggatgc
     3781 actttcgcgg tggccagcac ggtctgatcg gtgtcaacgg ccacgactgt cctgccggga
     3841 ggctccagga gccaaagctt acgggcctgg tcctcggaga ggtcccgacc gcaggcgtag
     3901 gtctcgccgg ccgccacgat gcgatgcagg aagggccaga tcgtcgccca gtcctcagga
     3961 attgcgtctc tgatcagcac ggtggccagc atgaaggggc agccggtagc gtcattcgct
     4021 cgggccgacg ggggcgatgg ctgtgggcgg gacaaggccg gtgtcgccga attgcaacac
     4081 caccatgatg aatcgcaccg gggcgtcagc ctcgttggcg tagcagtgcg gggcatgcgc
     4141 ctcgaagacg accacgtcat cgacgctcag cgtccgggcc tgcgccccga cccgcagcgc
     4201 gagctctccg tcgagtacga agagcacctc cattgtccct cgcgggtgcg cctcaccgtc
     4261 gaaggcgtcg ccgggttgga gcgtccagtc ccacagttcg accacgtcag gcgggtcggt
     4321 gccgatccgg aacagggcgc ggctgccggt ggcgctggtc cataacgcgg cagcgtcggc
     4381 cgcggcacgg acggtgaccc gtggcgctga gtcggcactg accagtgacg cgacgcccac
     4441 ccgcagggcc acagcaagat tgcacagcgt tgcgatgctc gggttgcccc gcgctgactc
     4501 cacttggatg accgtgcccc ggctcaggcc ggacgcgtcg gcgagtccgt cgatggtcat
     4561 ccggcgctgc tggcgcaacg cacggacatt gtgaccgacg gtggcggcga tctcctctgg
     4621 atcttgcatt cggtccagta ttccgtacta cagcgtcaat ttgattgaac tcccgaccgc
     4681 gggtcgctag agtccagttc agtggcctgg aagttcagta gagtagatga ctgggagcga
     4741 tggctgttca gttcgcgatt ccggccgcgg tcggttttgg agtcgcggac ttcgcgggtg
     4801 gcttagcaac ccgtcgggct tgctgcaccc tgtggatcat cgccgccgca cagctcgtcg
     4861 gagcggcagt gctcctgccg gccttaaccc tgttgccggg ccgcccatcg gtagccgcgg
     4921 tcacgttcgg tgccctcgcc ggcctcgccg gctcctccgg tctgctgctg tattttcagg
     4981 gcctcgcccg cggaccgatg ggcgtggtcg cgccgctgtc cgcgctcgcg ggcgcgggtt
     5041 tgccgctggg ggccggcgtc atggccgggg aacgttccgg accggtgacc ctcagcggtg
     5101 tcgcggtggc tctggtggca atcgccctcg ccaccgctgg gacctctcgt gatcggaccg
     5161 cggtgggtgg gctgctgctc gggattgggt caggcgtggg cttcggtctg ttctacatcg
     5221 cactggatgc gacctcaccg caatccggtc tgtggcccct gctggcagcc aaggtcgccg
     5281 ccgtggcggt cttcggctcg ctggtactgg cacgccgcac ctctggcgat gcgctgtggg
     5341 cccgtcccgg cctgatcgtg ctcagcggaa ccgccgacat gatgtcgaac atcctgttct
     5401 tgctggcgac ccggacgggc acgctgggtg tcagcgccgt actcgtctcg ctctacccgg
     5461 tggtggtcgt catccttgcc cggttggtgc tccacgagcg gctgaccctg ctgcaagcga
     5521 ccag
//
LOCUS       DASVXZ010000543         2529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_149103, whole genome shotgun sequence.
ACCESSION   DASVXZ010000543 DASVXZ010000000
VERSION     DASVXZ010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149103"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..966
                     /locus_tag="VF788_11295"
     CDS             <1..966
                     /locus_tag="VF788_11295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8934752.1"
                     /translation="DIPVPERQLASDPVAGVLTRQWPRSFADRVTAPLPGPPQFFRLW
                     REGGFAGATEGVAQIPVAARTLLPAGDNWLAWLGHASFLLRLNGRTVAVDPVLSQRIL
                     GAGQRLTPPGLDRLPPLDLLLISHNHYDHLDAPTVRTLHRDTPVVAPGGLGRWFRCRG
                     FTAVTELDWWESVHFRALEVTFVPAHHWSRRGLFDHCATLWGGFVLTVPGGLRVYHAG
                     DSAYGPFFASIGAEYPGIDVAMLPVGAYAPRWFMRTMHMDADEAVQAAGDVGGRVMVP
                     MHWGTFWLSSEPALEPIERTRDAWSAAGRDRADLWDLAVGQSRPL"
     gene            1588..2205
                     /locus_tag="VF788_11300"
     CDS             1588..2205
                     /locus_tag="VF788_11300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934753.1"
                     /translation="MDRNITRRLGVFASSAVVATGLMLAAGGTALAAPGDGGAGGVGG
                     PGGPGGFCFVAGCTAGNGAVGGIGGPGGNGGFGLVNNGGKGGPGGNGGNGGPGGTCVS
                     FFFGGGPCTAGNGAAGGVGGTGGNGGPSVFGNGGNGAIGGTGGIGGRGGDCVNFAFTG
                     CTAGSGAAGGAGGAGGAGGWSILGNGGNGGAGGNGGAGGDGGDAF"
BASE COUNT          431 a          757 c          834 g          507 t
ORIGIN      
        1 gacattcccg tccccgaacg gcaactggcc agcgatcccg tggccggcgt tctgaccagg
       61 cagtggcccc gctcatttgc cgatcgggtc accgcaccac tgcccggacc cccgcaattc
      121 tttcgactgt ggcgagaggg cggcttcgcc ggcgccactg agggagtagc acaaattccg
      181 gtcgccgccc ggacattatt gcccgctggt gacaactggc tggcctggct ggggcacgcc
      241 tcgttcctgt tacggctcaa tggacgcacc gtggcggtag acccagtgct gtcacagcgg
      301 atcctcggcg ctggccagcg cctcacccca cctggactcg atcggttgcc accgctggac
      361 ctgctgctca tcagccacaa ccactacgac cacctcgatg ccccgaccgt gcgcacgcta
      421 caccgagata ccccggtggt ggctccgggt ggactcggcc ggtggttccg ttgccggggc
      481 ttcactgcgg tcaccgagct cgattggtgg gaatccgtgc atttccgtgc tcttgaagtg
      541 acgtttgtgc cggcacatca ctggagtcgc cggggcctgt tcgaccactg cgcgaccctg
      601 tggggcgggt ttgtgctgac cgtgccaggt ggcctgcggg tgtaccacgc tggagacagc
      661 gcctacggcc cgttctttgc ttcgatcggt gccgagtatc cggggatcga cgtcgcgatg
      721 ctcccggtcg gcgcgtatgc accgcgctgg ttcatgcgga cgatgcacat ggacgccgac
      781 gaggccgtgc aggccgccgg cgacgtcggg ggtcgggtga tggtgcccat gcactggggc
      841 accttctggc tgtctagcga accggcgctc gaaccaatcg aacgcacccg tgacgcttgg
      901 tccgccgcgg gacgtgatcg cgcggacctg tgggacctcg cggtggggca aagccggccc
      961 ctttgaatac gcctgcattt ctaaaggcga gtacgttcat aaagtgagac gctgctcaat
     1021 tgccatttcc tcctggtcga tggcgcctgt ccctggtcta cgtaggtcca gtgaaaccta
     1081 aagctccgta aagatatctc tggtcggaca gattcggtga ttgatagcgc tcatcggttg
     1141 ggaataacag tctacgaacc cgccgggtcg cattccgaac actggtccac ataacgttag
     1201 ttccctggcg ttcggtgtac acaaactcgc ttgcctgcgt ttagacttcg taaccgttga
     1261 ccgttgttcg taatccgtta aacataccct cggtgaggga tttcatgtcg cgagtagcca
     1321 tagctggaag gttcgaacgg aaagtgcaga gaccgtaacc caaatcggtc agacgctagg
     1381 ctattcggat ggcattgtgt gggccggagt tacgggacgg ctcggggcgc gatgtccatc
     1441 gtgacgggct caagcaagcg ctcgagtggt ttccggcgag tgaagccgtc ctagagcggt
     1501 tttggtgatc aatgtgaatt ctgagcctgc ggatcgatct gacgtgccca attcgggtca
     1561 cgtgagatca cgactacgga ggtatttatg gatcgcaaca tcacgcggcg gcttggcgtt
     1621 ttcgcctctt cagccgtcgt ggctaccggt ctgatgctgg ccgccggagg caccgctctc
     1681 gccgcccccg gtgacggcgg cgccggtggc gtaggtggtc ctggtggtcc tggcggcttc
     1741 tgcttcgtcg ctgggtgcac cgctggcaac ggcgctgttg gcgggatcgg tggccccggc
     1801 ggcaacggcg gtttcggcct cgttaacaac ggtggcaagg gcggccctgg cggcaacggc
     1861 ggcaacggtg gccccggcgg tacctgcgtc agcttctttt ttggcggagg cccctgcact
     1921 gctggcaacg gcgcggctgg tggcgtcggc gggactggcg gcaacggcgg accttctgtc
     1981 ttcggtaatg gcggcaacgg cgctataggc ggtaccggcg gcattggcgg acgcggcggc
     2041 gactgcgtca actttgcgtt taccgggtgc acggctggta gcggcgctgc aggcggtgcc
     2101 ggcggagctg gcggtgccgg tggatggtcg atcttgggta acggcggcaa cggcggagcc
     2161 ggtggcaacg gtggagccgg tggtgatggc ggcgacgcct tctaatcact tcccacgcta
     2221 ggagatcact gcaccgatcc atgagtacgc aattgattcg gcggcctggt cccgactatc
     2281 gagtcacgac cgagctaggt gacaacggcg tcatcataac ggtgctcggg gaccatactc
     2341 agtcggatta ttcgctgaga gaggagaaat catgttgagg atgggccaca gtccggaacc
     2401 atcctcaaca caccattccg tccacaaatc cacaaggata acagatatat caccaagcgt
     2461 gccccatata ggggaaagcc agcggcgaat ttacgtcgtg agagccgcgc agtgacgcta
     2521 cgcggccgg
//
LOCUS       DASVXZ010000544         2177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_149429, whole genome shotgun sequence.
ACCESSION   DASVXZ010000544 DASVXZ010000000
VERSION     DASVXZ010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149429"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(623..886)
                     /locus_tag="VF788_11305"
     CDS             complement(623..886)
                     /locus_tag="VF788_11305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934754.1"
                     /translation="MRADDRPQAAAGAGCAMTAERSHRFALTGQDPAGRSRTIILWQE
                     ADLVNGKVVRRVVVTLDATMNTATVLTRAQAVEVGQAMLAAAQ"
     gene            complement(1542..1811)
                     /locus_tag="VF788_11310"
     CDS             complement(1542..1811)
                     /locus_tag="VF788_11310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934755.1"
                     /translation="MSAPRRVHLLSADEALAEGYRHGGYLALCGEPIDASSLANARCP
                     DKCGCEITYCPGCLDVATERNWEAGVDVGCPPGITVVTGTREVDQ"
     gene            complement(1808..1942)
                     /locus_tag="VF788_11315"
     CDS             complement(1808..1942)
                     /locus_tag="VF788_11315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934756.1"
                     /translation="MTNVVLTERGGEIKIDPHATGSCVITLDEDAASAVRDTITEWLG
                     "
BASE COUNT          369 a          697 c          683 g          428 t
ORIGIN      
        1 tgggatcatc gagcagagcg atgccgacgg cgtactcggt atcagatagc agcccgcggc
       61 ccaccaaccc gggccgcatc tgcgccatag ccatccggta gaacgcatca tccggactac
      121 cgtcgccgcg tgtttcaccg acgcggtcat gccgagctcg atgaggccgc cttccccagg
      181 gcggccggca gccggcgccg ggcccaccgg aagtccgcga tattgagtgg cttggctacg
      241 gaattcattg atcttctcat ggtagggggg cgggcgtttt cgtcgatacg tcgtagacga
      301 atgtcgtctc gccgatcgta aaggtcggat cgaagtctga tggacagcgt aattggcgcg
      361 atcaacacgc tgtccgtcag catgagaggt cgggtggtga ccaatcgggg tttttggcgg
      421 cttcctatca atgacgcaga gatgttgagc tcaatcgtag cccggccggg tcttaattgg
      481 ctggaactgg cccggacgca ggagcctcgg gagccatcat cagtacatgg ccgcattcag
      541 ctttgagcac gccgatgggc ggtctgcgtg gacatcgatg gtgtgactgc tccagtccag
      601 agcactcagc cccacttgat ggtcattggg cagccgccag catcgcctgc cctacctcaa
      661 cagcttgagc gcgggtgagc accgtcgcgg tgttcattgt ggcgtccagc gtcaccacca
      721 cccgccgcac cactttgccg ttcaccagat cggcctcctg ccacagaatg atcgtgcggc
      781 ttcggcccgc gggatcctgc ccggtgaggg cgaaccggtg cgagcgctcg gcggtcatcg
      841 cgcatcccgc cccggccgct gcctggggac ggtcgtcggc acgcataatc ggctgtagcg
      901 ggcctgcctc atgatcaggg ccgcggatag cacattctcg ccgcacagcg cgttgtagcg
      961 gcccggcgcc agcccatcga ctgcagcgtc gacggtgagc cgatgcagag ttccagcaac
     1021 atccaccatc tcgactgtgc gcgtgggttg tcgctgtgcc tgctcgctgg gtagccaatg
     1081 ttttggtttg ctgtgtcgcc ctaccatcgg tcctgctctt tcgtggttgt ggaaccggcc
     1141 gccacaggag cccgaagccg ggggaacaaa cgaacaatca accggcggtg gctagggatc
     1201 atggagtctg agcagttcct tttgccgccg ctggtattgc gcagctgctc ctaccgggtc
     1261 tgcccggcct cggtcaacga gaccgtctcc atcccaactg gtcacgctcg tcgatcgtga
     1321 gcagttggga tggaccacac atgaacagcg actccgggat caggtatcgg agtatcggct
     1381 ccgtcgtcga agtattcccc gtggcagcgg accacgcacc actgtgcacc cgcgacagcg
     1441 ctacccagtc gacgagctcc ggcgcggtcg gcatcgggac agttcgggtt gccgggcgaa
     1501 ttccggtgga atgtccacgt ccacgcggaa gattgggctg gtcactggtc cacctcgcgt
     1561 gtgcccgtca ccacggtgat ccccggtgga cagcctacat ctaccccggc ttcccagttg
     1621 cgctccgtgg ccacgtcaag acatccgggg cagtaggtga tctcgcagcc gcacttatcc
     1681 gggcagcgag cattcgccaa gctcgacgcg tcgattggct caccgcacag cgcgaggtat
     1741 cccccgtgcc tgtatccctc ggccagcgcc tcgtcagcgg agagcaggtg aacccgtcgc
     1801 ggcgcgctca tcccagccat tccgtgatcg tgtcccggac agcgctggcg gcatcctcgt
     1861 ccaaggtgat tacgcagctg ccggtcgcat gcgggtcgat tttgatctca ccgccgcgct
     1921 cggttagcac cacgttggtc aacgctctgg atccgccgtg ctgggtccag agcgcgtgga
     1981 gcgttcggtg gatgccgatt ggcttcgtct tgaagcatta tcggtgctat tggtcacgag
     2041 tgacgacagt gaacgcagtc gaaacagcgg tgtctctcgg tggggacacc tctaacagtt
     2101 gctgtccctc agtggggaca cttctaacgg atgggctgca ccggcagacc cgccctgtag
     2161 gccatcccgc gcagttc
//
LOCUS       DASVXZ010000545         2753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_239741, whole genome shotgun sequence.
ACCESSION   DASVXZ010000545 DASVXZ010000000
VERSION     DASVXZ010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239741"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VF788_11320"
     CDS             <1..358
                     /locus_tag="VF788_11320"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8934757.1"
                     /translation="GTLADIGVPTVLTRYGQALGSLALLESLPVHGVELAGPWVGATA
                     PKHDSVVRSALASLVPLIGRTGATVAVTGIDTVEEADWWRRVGADLARGVAFAPPVKP
                     ETVPALLHGVSGTACH"
     gene            536..2533
                     /locus_tag="VF788_11325"
     CDS             536..2533
                     /locus_tag="VF788_11325"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8934758.1"
                     /translation="MSPTAELPLPREIIEECLYEWVDRVVATLKREPFSPEPVAEAAA
                     TLVARGITGDQSLGRTIEVLGRYLPTLPELSAVPDLTDRVASMLGALVTGYSVALRHR
                     GFAERQAWFRAVFDSAPVGMVLSRLDGTIAETNGALTEILHHRPTELTGRDLAELFDP
                     DDAARLRTAYQALTEGKRGRLQRRVRALTGRGDTTWVALTVSLLRDAAGNPTRHVTMI
                     EDVADQQLLEQRVRHQSLHDLLTGLPNRLHFAIHLEDQLERDRNAVITLYQIDLDSFG
                     VVTDGLGMGFGDLLLRSVAERLQALVEAENAFVARFGADGFAILIKESLTTPNAAILA
                     ARINAELSEPVHLAGHGLAVSACIGVVRRAAGETDAKELIRAAEATLHRAQRTGRGQW
                     GLYDPIADARDRARYALATGMPEAWEDGQLTLSYQPLVRLDPAAADAGRIVALAALLC
                     WEHPQRGAVTHDDCLALAEKTGLVLTIGPWMLRQACEHLRDWREQLGAAVPPVRVDLT
                     SHLTQDPDLVAIVRDTLADTQFRPEDIQLGLPVEVIVAGHGDAVDNLCTLAEIGVCTV
                     LTRYGQAVGNLALLESLPVQGVEIAGPLVRTAAAKPDSVVRAALANLVPLIRRTGTAV
                     VAADLDDAEQAYWWRDVGADAARGTVFSAPAAAEHIPAVLR"
     gene            complement(2537..>2753)
                     /locus_tag="VF788_11330"
     CDS             complement(2537..>2753)
                     /locus_tag="VF788_11330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934759.1"
                     /translation="RIERRSLPWHFDSPAQMTEFYMAHSAAYVAAKRAAGERADEMVA
                     AIERQASPDGGPVRLEAEYLLAQALRS"
BASE COUNT          438 a          925 c          943 g          447 t
ORIGIN      
        1 ggggacgctg gcagacatcg gagtgccgac ggtgctcacc cggtacggcc aggcgctcgg
       61 gagcctcgct ctgctggaat ctctgccagt gcacggggtg gagctagccg gtccgtgggt
      121 aggcgccacc gcaccgaagc acgactcggt agtgcgctcc gcgctggcca gcctggtgcc
      181 attgatcggg cgcaccggcg ccacagttgc cgtgacgggt atcgataccg tcgaggaagc
      241 agactggtgg cgacgcgtcg gcgccgacct ggcccgcggt gtcgcattcg ccccgccggt
      301 gaagcccgag acggtcccgg cgttgctgca cggtgtgtcg ggcacggcat gtcactgagt
      361 actaacttga tcaggaacaa ggatcaccgc gggcgccgtc acagccggta gactggtgcg
      421 gcgctggacg gccagcgcgc cactggggat gctgaggtaa ggcggataag gcacgatgag
      481 cggcgcggcc cgtcccacgt cgcgcgttga gctggcccgc gcttggtccc acgcggtgag
      541 cccgaccgcc gagttgcccc taccacgcga aatcatcgag gaatgtctct atgaatgggt
      601 cgaccgggtg gtcgccacac ttaaacggga gccctttagt ccggaaccgg tggcggaggc
      661 cgccgccacg ctggtagcgc ggggtatcac cggtgaccag agcctcggtc gtaccatcga
      721 ggtgctcggg cggtacctgc ccacgctacc tgagctgagc gcggtccctg acctgaccga
      781 cagagtcgcc tccatgctcg gtgcgctggt caccggatac agcgttgcgc tgcgccatcg
      841 gggcttcgct gagcgccaag cctggttccg ggcggtgttc gactccgcgc cagtgggcat
      901 ggtgctgagc cggttggacg gaacgatcgc cgagaccaac ggcgcgctga ccgagatcct
      961 gcaccatcga cctaccgagc tcaccggccg cgatctggcc gaactctttg atcccgacga
     1021 cgcggcgcga ctgcggaccg cttatcaggc gctcaccgag ggaaaacgag gacgccttca
     1081 gcgcagggtc cgagcgctga ccgggcgtgg ggataccacc tgggtcgccc tgacggtgtc
     1141 gctactgcgc gatgcggcgg gcaacccgac tcgtcacgtc acgatgatcg aggacgttgc
     1201 cgaccagcag ctgctcgagc agcgggtccg tcaccagtcg ctgcatgacc tgctgaccgg
     1261 gttgcccaac cggctgcact tcgcaatcca cctcgaagac cagctcgagc gtgaccgcaa
     1321 cgccgtcatc acgctgtatc agatcgactt ggactccttc ggcgtggtca ccgacggcct
     1381 tggtatgggc ttcggtgacc ttctgctgcg atcagtcgcc gagcggctcc aggcgctggt
     1441 cgaagcagag aatgctttcg tcgcccggtt cggtgccgac ggattcgcaa ttctcatcaa
     1501 ggagtcgctg accacgccca acgcggccat cctcgcggca cgcatcaacg ccgagctgtc
     1561 cgaaccggtc cacctcgccg gccacggctt agccgtcagc gcatgcatcg gcgtcgtacg
     1621 acgcgcagcc ggcgagaccg acgcgaagga gctcatccgc gctgcggaag caacgttgca
     1681 ccgggcccaa cggactggtc gcgggcagtg ggggctctac gacccgatcg ccgacgcgcg
     1741 ggaccgggcg cggtacgcat tggccaccgg catgcccgag gcctgggagg acggtcagct
     1801 cacgctgtct taccagccgt tggtgcggct cgatcccgct gccgccgacg ccgggcggat
     1861 cgtcgcgctc gcggccctgc tgtgttggga acacccacag cgcggtgcgg tgacccacga
     1921 tgattgtctc gcgctcgctg agaagaccgg cctggtactc accatcgggc cgtggatgct
     1981 ccggcaagca tgcgagcatc tgcgtgattg gcgcgagcag ttaggcgcgg cggtgccacc
     2041 ggttcgcgtg gatctgacct cgcatctgac ccaggatccc gacctcgtgg cgatcgtgcg
     2101 cgacaccctg gcggatactc agttccggcc agaggacatc cagctcgggc taccggtcga
     2161 ggtgatcgtg gcggggcacg gcgacgcggt ggacaacctg tgcaccctgg ccgaaatcgg
     2221 ggtgtgcacg gtgctcaccc ggtacggcca ggcggtcggc aatctcgccc tgctggagtc
     2281 gttgccggtg caaggtgtgg agatagccgg tccgttggta cgcaccgccg cagcgaaacc
     2341 cgactcagtg gtacgggccg cattggccaa cctggtgccg ttgattcgcc gcaccggcac
     2401 cgccgttgtc gcggcggatc tcgatgacgc cgagcaggcc tactggtggc gtgatgtcgg
     2461 tgccgacgcg gcacgtggca cggtgttctc cgcgccggcc gcagcggagc acatcccggc
     2521 agtgctgcgc tgacattcac gacctcagag cttgggccag caagtactcc gcttccagcc
     2581 gcaccggacc gccatcggga gatgcctgcc gctcgatcgc ggcgaccatc tcgtcggccc
     2641 gctctccggc cgcccgcttg gcggcgacat atgccgccga gtgcgccatg tagaactcgg
     2701 tcatctgcgc gggcgagtcg aagtgccagg gcagcgaccg gcgctcgatc ctg
//
LOCUS       DASVXZ010000546         2056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1105474, whole genome shotgun sequence.
ACCESSION   DASVXZ010000546 DASVXZ010000000
VERSION     DASVXZ010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105474"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1003
                     /locus_tag="VF788_11335"
     CDS             <1..1003
                     /locus_tag="VF788_11335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX8934760.1"
                     /translation="RNHVRSISMFGRGRTTASLAAVAMAAALVAGCGGLSGSGPSARG
                     GSLVQEVNLEGQSYTVGGKNFDEQLVLCQIAVAALESVNAKVTDRCNVGGTDATRKAL
                     LGGDIDLYWEYTGTAWVSFLGQKPIQDSRAQYEAVRERDLTQNKIIWLQPAPFNNTYA
                     FAVKKERAQQLGLRTLSDMAAYLRSGQPGNMCIETEYQNRDDGLTGLQRTYNFQVPPD
                     RLRVLQTGAIYQATADQKECLFGEVFTTDGRIPQLGLTVLQDDKLYHPLYNAAPTMRK
                     EVYDRNPNIAKAFAPISAALTNDVITELNRQKSAEGKPERQVARDWLAQQGFIAQGS"
     gene            complement(1056..1265)
                     /locus_tag="VF788_11340"
     CDS             complement(1056..1265)
                     /locus_tag="VF788_11340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934761.1"
                     /translation="MMLDAQADPGRRAWLPCAYCGDTPLYLLDYDVNLVWVQCGACLR
                     RWWHDTGVGSRRHPKHLLCELFDAA"
     gene            complement(1262..1489)
                     /locus_tag="VF788_11345"
     CDS             complement(1262..1489)
                     /locus_tag="VF788_11345"
                     /inference="COORDINATES: protein motif:HMM:NF040083.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6400 family protein"
                     /protein_id="HEX8934762.1"
                     /translation="MASLVPFTIDLTAHEGTRLAAVLDALGPHWDPTQIFTDEAEAHR
                     MLYAHLDSDQQAAYDLLIADGVLPETPEVIT"
BASE COUNT          383 a          669 c          669 g          335 t
ORIGIN      
        1 gaggaaccac gtgcgatcga tatcaatgtt cggccgtggc cgcaccactg cctcgttggc
       61 tgcggtggcg atggctgccg cgctggtcgc cggatgcggc ggactgagcg gcagcggccc
      121 gtcagcgagg ggcggcagcc tcgtccagga ggtcaacctc gaaggccagt cctacaccgt
      181 aggcggtaag aactttgacg agcagctggt gctgtgccag atcgccgtgg ccgccctgga
      241 gtcggtcaac gccaaggtca ccgaccgatg caatgtcggt ggcaccgacg caacccgcaa
      301 ggcgctcctc ggcggtgaca tcgacctgta ctgggagtac accggcaccg cgtgggtctc
      361 cttcctcggc cagaagccga tccaggacag cagggcgcag tacgaagcgg tcagggaacg
      421 ggacctgacc cagaacaaga tcatctggct tcagccggcc ccgttcaaca acacctacgc
      481 cttcgcggtc aaaaaggagc gggcccagca gctcgggctg cggaccctgt cggatatggc
      541 cgcatacctt cgctccggcc aacccggcaa catgtgtatc gagaccgagt accagaaccg
      601 ggacgacgga ctcacgggtt tgcagcggac ctacaacttc caggttccgc cggatcggct
      661 gcgggtcctc cagaccggtg ccatctacca ggccaccgcc gaccagaagg agtgtctctt
      721 cggggaggtc ttcaccaccg acggtcgcat cccacaactc gggctgacag tgctgcagga
      781 cgacaagctg taccacccgc tttacaacgc ggcgcccacc atgcgcaagg aggtctacga
      841 ccgcaacccg aacatcgcca aggcgttcgc accaatctcc gcggcgctga ccaacgacgt
      901 gatcaccgaa ctgaaccggc agaaatccgc ggagggcaag cccgaacgcc aggtcgcccg
      961 cgactggctc gcccagcagg gcttcatcgc ccaggggtcc tgatcatttt ggcaaccggc
     1021 cttcttgacc acgacaaggc aggtaggcgt caggttcagg cggcgtcgaa cagctcgcac
     1081 agcaggtgct ttgggtgccg tcggctgccg acaccagtgt cgtgccacca gcggcgtagg
     1141 caggcgccgc actgcaccca gaccaggttg acatcgtaat cgagcaggta cagcggggta
     1201 tcgccgcagt aggcacaggg cagccacgcg cggcggccag ggtcggcttg ggcgtcgagc
     1261 atcatgtgat cacctccggg gtctcgggca gcaccccatc agcgatgagc aggtcgtaag
     1321 ccgcttgctg gtcggagtcg aggtgggcgt aaagcatgcg atgggcttcg gcttcatcgg
     1381 tgaagatctg agtgggatcc cagtgcgggc cgagggcatc caggactgca gccaggcggg
     1441 tgccttcatg cgcggtgaga tcaatagtga acgggacgag gctggccaca acgcacctcc
     1501 gggatctggt cgggccgagg tttaggtgct gacctcaaga tcaccggatt ggtcaccctg
     1561 aatgtcatac agagctagag cggcgggtcc atcaccggcg tacaacccgg ggccgggaac
     1621 tcgcgaggtg tgtcagatct caccctttcc tccgcggcgc gttctcgcca agggcgcacc
     1681 cagctgagcg gaccctccca cggtcctagg acaccgctga gttatcgaca tttcctgccc
     1741 cgtaccggca gacccgatgc acacccagcg gaccttgtgg ccgccggctg ggctcgcgcg
     1801 gtggcaccgg gcatccccgc ccactgcgcc gcgtggaccc tgctctgaac cgcgggcaca
     1861 gtggtcggcg cgagcaccga tcgtggatac cgctagttct ggtgctcatg cgcgaaatct
     1921 cccagcggtt cgttctagcc gtcagaagtt ttggccccgg tgctcgagtc ctggatgtgg
     1981 tcggcaggtg cccccggagg cggtccatga tatgtgtcgg cgcgcgggcc cgtatgtggc
     2041 attgattcgg gcacct
//
LOCUS       DASVXZ010000547         2096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_59610, whole genome shotgun sequence.
ACCESSION   DASVXZ010000547 DASVXZ010000000
VERSION     DASVXZ010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59610"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..>2096)
                     /locus_tag="VF788_11350"
     CDS             complement(116..>2096)
                     /locus_tag="VF788_11350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934763.1"
                     /translation="VTTGGATLTQGAGHRIRGSGTVNAKLINNGLVSSDAAVNTGNFS
                     TLSLGAVDMTNNGTFQAIDGHTLELNTTNVSQAVSAQILANNGSVVLNGATVTGGTLA
                     SSNNGSFWAGNARLNNITNNAVVGVGYTAVGAGPLVNNGDISIYGNPGFGTLEFTGDT
                     TVSGTGRIASVRGGYSILKIASGYTLTNAPGHTISGNGIIRGRIVNQGIIVPTADSYL
                     QLLSSEGGTNLTNAGGDINVPANTTLSFEAGVPFTQTSGVIRLTGGELAVPSGVDLNG
                     GTLLGNGTISGPIRNNGGVVAPGLSPGKITINGNYTQGANGVLDIEIGGTAPGTGYDQ
                     LRVNGTATLGGTLNVTLINGFQPAVGDVFQIIAPNAFSGAFATINTVGFSGTVSYSSS
                     GITLTVISSAGIPLNISTRMHVGTDPNQLIGGFIITGSEPKKVIVLATGPSLAAFGIT
                     EFLADPVIELYEGSNLIASNDNWKVPAQAEIEATGLKPGHDLESALVRTLAPGAYTAV
                     VRGTNGTGVGTVQVYDLSPASLSKLANISSRGFVQTADDRIMIAGFIIGGNGGGNSGI
                     VVRAIAPSLSGIIAGVLPDPTLELKDANGSTLLFNDDWQQSPQAGDISARGLAPSHPQ
                     ESALGVSLSNGAYTAIVRGKGGATGVAVVEVYSVD"
BASE COUNT          396 a          623 c          658 g          419 t
ORIGIN      
        1 cgggcaggca aagcgcgaat gcgacaagga gaaccgaacg cagcaggtga tttcttcgga
       61 ttgttttcat ggccttggac ggcggcggtg ggaaaccgcc gccggtgatt ggaaatcaat
      121 cgacgctata aacttcgacc acagccacgc ccgtcgcgcc gcctttgccg cggacgatgg
      181 ccgtgtaggc gccgttggat agagaaacgc ccagggccga ttcctgggga tggctcggcg
      241 caaggccacg cgcactaatg tctccggctt gaggcgattg ctgccagtcg tcattgaaca
      301 ggagcgtgga cccgttggcg tctttgagct ccaaggtggg atcgggcagg actccggcaa
      361 taataccgct cagcgatggc gcaatcgcgc gcaccacgat gccggagttg ccacccccat
      421 tcccgccaat tatgaaaccg gcgatcatta tccggtcgtc ggcggtttga acaaagccgc
      481 gggagctgat gtttgccagc ttggacaaag aggccggtga gagatcgtag acctgcacgg
      541 tcccgacgcc ggtgccattg gtgccgcgca ctaccgcggt ataagccccc ggcgcgagag
      601 tccgcacgag cgcggattcc agatcgtgac ctggtttcag ccccgtcgct tcgatctcgg
      661 cctgagcggg gaccttccag ttgtcgttgc tcgcgatgag gttgctcccc tcatagagct
      721 caataacggg atcagccagg aactccgtga tgccaaacgc tgccagggaa gggccggtcg
      781 cgagcacgat tactttcttc ggctcggagc cggtgatgat gaatccgccg atcaactggt
      841 ttggatcggt gccgacgtgc atgcgcgtcg agatgttgag cgggatgccg gccgagctaa
      901 tgacggtgag cgtgatgccg ctgctcgagt agctgacggt gccgctgaag ccgacggtgt
      961 tgatcgtagc gaaggcgccg ctaaaagcat tcggcgcgat gatctggaat acatcgccga
     1021 ccgcaggctg gaatccgttg atcagagtta cgttcagcgt gccaccgaga gtagcggtgc
     1081 cgttgacccg caattggtcg tagcccgtcc cgggcgctgt gccgccgatc tcgatgtcga
     1141 gaacgccatt cgcgccctgg gtgtagttgc cattgattgt gatcttcccg ggcgataatc
     1201 ccggggcgac cacgccgccg ttgttgcgaa tcggtccgct gatcgtgcca ttcccgagca
     1261 gcgttccacc gttcagatcc acaccgctcg ggacagccaa ctcgccgccg gtgagccgaa
     1321 tgacgccaga ggtttgggtg aagggaacgc cggcctcaaa agagagcgtg gtgttcgccg
     1381 gcacgttgat gtcgccacct gcgttcgtga gattggttcc gccttcgctg ctcaacagct
     1441 gcaaatagct gtcggcggtc ggcacgataa taccctggtt cacgatccga ccgcgaatga
     1501 tcccattccc gctgatcgta tgcccgggag cattcgtgag ggtgtagccc gacgcgatct
     1561 tcaggattga ataaccaccc cgcaccgagg cgattctgcc ggtcccggaa acagtcgtat
     1621 cacccgtgaa ttccaaggtg ccgaaacccg gattcccgta gatcgagatg tcgccgttgt
     1681 ttacgagcgg gcctgccccc acggcagtgt aaccaacgcc gaccaccgca ttgttggtga
     1741 tgttattgag ccgggcgttg cctgcccaga aggagccatt gttgctcgac gccaaagttc
     1801 cgcccgtcac ggtcgcaccg ttgagcacga cgctgccgtt gttggccagg atttgcgcgg
     1861 acactgcctg cgacacattg gtggtgttga gctcgagcgt atgaccatcg atggcttgaa
     1921 acgtcccgtt attggtcatg tcgaccgcac ccagcgacag cgtgctaaaa ttgcccgtgt
     1981 tgactgccgc atcagacgag accaggccgt tgttaataag cttcgcgttg acggtgccgc
     2041 tgccacggat ccggtgtccg gccccctggg tcagggttgc gccacccgtg gtgacg
//
LOCUS       DASVXZ010000548         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1225325, whole genome shotgun sequence.
ACCESSION   DASVXZ010000548 DASVXZ010000000
VERSION     DASVXZ010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1225325"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..735
                     /locus_tag="VF788_11355"
     CDS             <1..735
                     /locus_tag="VF788_11355"
                     /inference="COORDINATES: protein motif:HMM:NF013753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934764.1"
                     /translation="VRCRIQREQAGHRGRTHDPLYGIRRLLRRAPDHHSDHSWTKLLA
                     GLDAGDTDDEQLARTWIAAQDLRLIYHAPDRARAEAGLYRWLTYCANANIPELTRLAT
                     TIDSWRAELLAYFDTGGISNGPTEAINLLIKKIKRVGHGFRNFDKARPECPQRLRPPD
                     THAGRRAERNRPHIRLINLDTTFCQQFFDIAVGISASTRDCHRDHFWAGTRNPAKPEL
                     GTSTRAARRRIGLACSILPSRTQRCP"
     gene            838..1740
                     /locus_tag="VF788_11360"
     CDS             838..1740
                     /locus_tag="VF788_11360"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEX8934765.1"
                     /translation="MRGSPLVSFFVLAYGVTWLLWSPVVLLGLPVFSETTHAPSWYVL
                     PGIALGVTGSAFLMTAITQGRLGVRRLLQRLVFWRVGLQWFAVAVLLIPVSEVLVAVV
                     LGTPDAIRALTPAAVSIYPAAYAAHFFFGPLFEESGWRGFALPRIQHRFGPLKGTFLL
                     GLLWSAWHFFVYLPAWFASGVVGGVVGVAVFVLTTTAITFVFTWLFNNTKASLLLSIL
                     LHGSVDGTATYLQVLADRGVISAAASDNSIQFGMLIACVVWAAVLSVLTRGRLGYPRY
                     RDEAEHLDLQPPSERESAPGAMGT"
     gene            complement(1727..2737)
                     /locus_tag="VF788_11365"
     CDS             complement(1727..2737)
                     /locus_tag="VF788_11365"
                     /inference="COORDINATES: protein motif:HMM:NF033563.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEX8934766.1"
                     /translation="MTAFSDRMVPEVVQTFWVAMQRGEFITDAAAQAGTYRKKGARWL
                     VAAGGVRPRRGRDLKGRCLSFAEREEIALGRAGGESMRSIAARLGRSPSTINRELGRN
                     RGKVGRYRASTAHALAYERAGRPKPAKLATNLVLRGIVEQDLSKKYSPEQIAGRLRVE
                     FPDDPEMRVSHETIYQSLYVQSRGALRRELTAYLRTGRILRRPSRKAGQRRNRIPDMV
                     NISARPPEVTDRAVPVHCRTHLRLHHAGAPAQRLHPRAGPRRPRPQDPNTARGAARIT
                     DLGPRPRNARLEADQRRRRIPCCDHRKKQGSLFGHAPTLISAGPLAVIRRCISATRSR
                     CP"
BASE COUNT          514 a         1148 c         1056 g          610 t
ORIGIN      
        1 gtccgctgcc gcatccaacg cgagcaggcc ggccaccgcg ggcgcacaca cgatccgctc
       61 tatggcatcc gccggctact ccgccgcgca cccgaccacc acagcgacca ctcctggacc
      121 aagttgctgg ccgggctcga tgccggcgat accgacgacg agcagctcgc ccgcacctgg
      181 atcgccgccc aagacctccg gctgatctac cacgcccccg accgcgcccg cgccgaggcg
      241 ggcctctacc ggtggctgac ctactgcgcc aacgccaaca tccccgaact cacccgcctg
      301 gccaccacca tcgactcctg gcgcgccgaa ctgctggcct acttcgacac cggcgggatc
      361 tccaacggac ccaccgaagc gatcaaccta ctgatcaaga aaatcaagcg cgtcggccac
      421 ggattccgca acttcgacaa ggctagacca gagtgtcctc aacggttgcg gcccccggat
      481 actcatgcag gtcgacgcgc cgagcgaaac cgtcctcaca tacgcttgat caacttggac
      541 accacgttct gtcagcagtt ctttgacatc gcggtaggca tctccgcaag taccagggac
      601 tgccaccgtg accacttctg ggcggggacc cggaacccgg cgaagccaga gctcggtacg
      661 agcacacgag cagcgcgacg acgcatcggg ttagcctgct cgatcctgcc atcaaggaca
      721 caacggtgcc catagcatga ccttaggtgg gttcattcgg acctggggag gttgcgcata
      781 gccacgtcgt cgtcttcggg gtcacaggag cggctgccgg agcagatcgc gcgggtcatg
      841 cgcggtagcc ccctagtctc gttcttcgtc ttggcctacg gggtcacctg gttgctgtgg
      901 agtcctgtgg tgcttctggg actgccggtc ttctccgaga ccactcacgc gccgagctgg
      961 tacgtcctgc ctggtatcgc gctcggtgtg accgggtcgg cgttcctgat gaccgcaata
     1021 actcagggca gactgggggt gcgtcggctg ctgcagcgcc tggtgttctg gcgggtgggc
     1081 ctgcagtggt ttgcggtggc agtgctcctg attccggtca gcgaggtgct ggtcgcagtg
     1141 gtgctcggca ccccggacgc gatccgggcg ctcacccccg ccgcggtatc gatttatccg
     1201 gccgcctacg ccgcgcactt cttcttcggc ccgttgtttg aggagtcggg ctggcgggga
     1261 tttgcgctgc ctcgcatcca gcaccggttt ggcccgctga aagggacgtt tctgctcggc
     1321 ttgctgtgga gcgcctggca cttcttcgtg tacctgccgg cttggttcgc cagcggtgtg
     1381 gtcggcggtg tggtgggggt ggccgtcttc gtcttgacca ctacggccat cacgttcgtc
     1441 ttcacctggc tgttcaacaa cactaaggcc agcctgctgc tgtcgatcct gctccacggc
     1501 tccgtcgacg gcacggccac ctacctccag gtgctagcgg acaggggcgt gatctccgca
     1561 gccgcctccg acaacagcat tcagttcggg atgctgattg cgtgtgtggt gtgggcggcc
     1621 gtgctcagcg tcttgactcg gggccggctg ggctacccgc gctatcggga cgaggccgag
     1681 catctcgacc tccagccacc gagcgagcgg gaatccgcgc ccggcgctat gggcacctag
     1741 accgcgtggc actgatgcat cggcggatca ccgcgagagg gcctgctgag atgagggtcg
     1801 gtgcgtgtcc gaatagggat ccttgtttct ttcggtggtc gcaacacggg attcggcggc
     1861 gacgctgatc tgcttccagt cgcgcatttc gaggccttgg tcccaagtca gtgatccgcg
     1921 cagcacctcg ggcagtgttt ggatcttggg ggcgagggcg tcgcggaccc gctcgggggt
     1981 gtagccgttg ggcaggtgca ccagcatggt gtagccggag gtgcgttcga cagtgcacag
     2041 gcacggcgcg gtcggtgacc tcgggtgggc gcgcactgat gttgaccatg tccgggatcc
     2101 ggttcctgcg ctgcccggcc ttgcggctgg gtcgacgcag gatccgcccg gtgcgcaggt
     2161 aggccgtcag ctcccggcgc agcgcccccc gggactgcac gtacagcgac tggtagatcg
     2221 tctcgtgaga cacccgcatc tccgggtcgt cgggaaactc cactcggagc cgcccagcga
     2281 tctgctcggg tgagtacttt ttgctcagat cctgctcgac gatgccacgc aggaccagat
     2341 tcgtcgccag tttggccggc ttcggtcgac cggcccgctc gtaggccagg gcatgcgcag
     2401 tgctggcccg gtaccgcccg accttgccgc ggttgcggcc cagttcgcgg ttgatcgtcg
     2461 agggactgcg cccgaggcgg gccgcgatcg agcgcatcga ttccccgccc gcgcgtccca
     2521 acgcgatctc ctcccgctcg gcgaagctca ggcagcggcc cttgaggtcc cggcctcgcc
     2581 ggggccggac cccacccgcg gcgaccagcc accgagcacc tttcttccga tacgtccccg
     2641 cctgcgcggc ggcgtcggtg atgaactcac cgcgctgcat cgccacccaa aacgtctgca
     2701 cgacctccgg caccatccgg tcggagaacg ccgtcactgc acacctctcc tcgcaccacc
     2761 accggagacg atcaccccga tggtccaccg tgaacactcg ccagcccgac cttcctctgg
     2821 cccccattct caccgccgct cgtcgagcct ccaggtcata cgtcctcgct gcgttgcggg
     2881 cgctccacct ggacccactc ctcaacgccg gcaacacatg gccaggatcg aggaagggca
     2941 tctccgccgt cagcctcgcc gaatcgtgtt gcgaccaccg aaagaaccca aggatcccta
     3001 tccggacacg cacccggcct tccgggactg tcgtcgaacc ggtcaggccg tgcggtcggg
     3061 tggtggggcg attgtgtggt cgcctcggcg cagtccggag gagtgctgcg ccgatgtgcc
     3121 cgatttagac aagtcggtga ccgtacccgt cgggcgctgc ggcttgttag acagggcttg
     3181 cgcttttagg tgatcaccaa ggcgcggtct ggaacgggga cctcctgcga tgccgcggca
     3241 tgactgcggg aggtttttca tccaatgtcg ccctatcgct tcccggcgcc gatcacccag
     3301 gcgagtacta cgacgaatcc gacgagca
//
LOCUS       DASVXZ010000549         2032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_328923, whole genome shotgun sequence.
ACCESSION   DASVXZ010000549 DASVXZ010000000
VERSION     DASVXZ010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328923"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..895
                     /locus_tag="VF788_11370"
                     /pseudo
     CDS             184..895
                     /locus_tag="VF788_11370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(955..1884)
                     /locus_tag="VF788_11375"
     CDS             complement(955..1884)
                     /locus_tag="VF788_11375"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HEX8934767.1"
                     /translation="MARTPTPPRRVRRPVLLAIAGDSAAGKTTLTEGLVEALGKDRCV
                     SICVDDYHRYDRQERKSLPFTALHPDCNYVEIMEQHLQLLATGRPILKPVYDHGTGLL
                     ARPELIEPAEFIIVEGLLPLHSKLARACFDVTVYLDPPEDVRRRWKINRDTGKRGYTV
                     EQVTAEMERRRPESDAFIIPQRRHADIVVRFHPTTGRDDPPDTPLSAELLLRPTIHHP
                     DLTTVLAPGMQQTIHLTLQRDEHGRPVDALYVRGDAPREESHQVENAIWSSLVGEQGD
                     APSTLGAIGDDHRSEPLAITQLMLLYHLLDAVQ"
BASE COUNT          322 a          604 c          697 g          409 t
ORIGIN      
        1 agatactcaa cgaactctcc attattgaca acacccaacc cgaactacac gctaaactca
       61 gcgaccggtt ccaggagaaa tacggtcacg gcaatgaagt gttcattggg ctcgagccgg
      121 tcagtgatga caatttgggg caccgttgcg ttggcggatg acctgctcag gcaggctagg
      181 ctgatgcgcc gtcgcgacgt tcgggtgtca ccgccacggt ctagcttcgc agggttccgg
      241 ttcccaccgg aggtgatcac cttggcagtg cgctggtatc tgcgtttcgg tctctcctac
      301 cgtgatgtgg aagagctcct cgccgagcga ggcatcaagg tcgaccatgt cagcatcttc
      361 cgctgggtgc agcgcttcac gccgctgctg gcgcaggcgg cacacccatg ccggcaccgt
      421 gtcggggacc gctggtgggt ggacgagacg tacgtcaagg tgtccggtcg gtggcgctat
      481 gtctatcggg cgatcgacca gttcgggcag gtcatcgact gtatgtgtcc cgcggcgaga
      541 tggtggtgcg gctcggtgct tcttcacccg ggcgctggct accacgaagg tcgtcccggt
      601 ggaggtcacc accgacaagg cggcggtgta cccacatgtt ctcgataagc tcactccggg
      661 tgcttggcac tgcacggagc tctacgccaa caatcgaatg gaagccgatc acggtcagct
      721 gaagcggcgc ctgcgaccga tgcgcggcct gaaaacagat ctcggagcca ggatcatcat
      781 tgcggggcac gcgttcgtcc agaacgtccg tcgcggccac tacgagcttg gcgttgacga
      841 agcacctatc ttgcaggtga tggccgcgtt cgacgagctg gctgtggcga tctgacccac
      901 ccaaggatca cggtctcgcg tgcctcggct tcgccaagtg caacagcgcc agcttcattg
      961 cactgcgtcg agtaggtggt agagcagcat cagctgggtg atcgctagcg gttcgctgcg
     1021 gtggtcgtcg ccgatggcgc ccagggtgct gggcgcatcg ccttgctcgc cgacaagtga
     1081 ggaccagatc gcgttctcca cctggtgact ttcctcccgc ggtgcgtcgc cgcgcacgta
     1141 cagggcgtcc accggccggc cgtgttcgtc gcgctggagg gtgaggtgga tggtctgctg
     1201 catccccggc gcgagcaccg tggtcaggtc gggatggtgg atggtgggtc gcagcagcag
     1261 ctccgctgac agcggcgtgt ccggtgggtc gtcgcggcca gtggtcgggt ggaatcgcac
     1321 gacaatgtcg gcgtgacggc gttgggggat gatgaacgcg tcgctttccg ggcggcgccg
     1381 ttccatctcg gcggtgactt gctcgacggt gtagccgcgc ttaccggtat ctcggttgat
     1441 cttccacctg cggcgcacgt cctcgggtgg gtcgaggtaa accgtcacgt cgaagcaggc
     1501 ccgggccagc ttgctgtgca atggcagcaa tccctcgacg atgatgaact cggccggctc
     1561 aatgagctcg gggcgagcca gcaggccggt gccgtggtca tagaccggtt tgaggatggg
     1621 gcgtccagtg gccagcagct gcaggtgttg ttccatgatc tcgacgtagt tgcagtccgg
     1681 gtgcagcgcg gtgaacggca ggctcttgcg ttcttggcgg tcgtagcggt ggtagtcgtc
     1741 aacacaaatc gatacgcacc tgtctttgcc gagagcctcc acgagaccct cagtgagggt
     1801 ggtcttgccg gccgcgctat cgccagcgat cgcgagcagc accgggcgcc tcacccgcct
     1861 gggcggcgtg ggtgtcctgg ccatcgggga actcctcacg agtctggaga cctatcgctg
     1921 tgttctgtgc ctggcgcgcg tctgggagac cgggactgtg ccgcgcagct gcgggagctg
     1981 cccttgaggg ttggggtgta tttcctgctc cgttgggcat gttgcccgcg cc
//
LOCUS       DASVXZ010000550         4442 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1105580, whole genome shotgun sequence.
ACCESSION   DASVXZ010000550 DASVXZ010000000
VERSION     DASVXZ010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4442
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105580"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..239
                     /locus_tag="VF788_11380"
     CDS             <1..239
                     /locus_tag="VF788_11380"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Scr1 family TA system antitoxin-like
                     transcriptional regulator"
                     /protein_id="HEX8934768.1"
                     /translation="VIPIYSAAHPAVGGPFSILRFSDQDLPDIIYLEQLSSAVYLDKN
                     EDIQRYRSIMDRLCVQAKSPSETIKFFNSMLKES"
     gene            275..571
                     /locus_tag="VF788_11385"
     CDS             275..571
                     /locus_tag="VF788_11385"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HEX8934769.1"
                     /translation="MRAPRHEDHTVDFRWPNCCTSGHSGDGCREVRAGLFHGSYCLSC
                     CWALMVLLIAFGVLNVTAMVILAFSRMTGMMALGLAVAVVWRQGLAAVLIVHEP"
     gene            complement(925..1167)
                     /locus_tag="VF788_11390"
     CDS             complement(925..1167)
                     /locus_tag="VF788_11390"
                     /inference="COORDINATES: protein motif:HMM:NF016070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8934770.1"
                     /translation="MDRSEMSPIARVMRTIPLFSASWRKSSHSNPSGDCVELRGLAGG
                     KIAIRHSRNSDGAILMVACAEVAAFIRGVKEESWTK"
     gene            2136..2435
                     /locus_tag="VF788_11395"
     CDS             2136..2435
                     /locus_tag="VF788_11395"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Scr1 family TA system antitoxin-like
                     transcriptional regulator"
                     /protein_id="HEX8934771.1"
                     /translation="MRSADSLIEAVELPNVALRVLPFAAGAHPGMDGSFTVLEFSDAS
                     NPRIVYLDRMTDSEYLDGLRDVAAYRHAHERLRASALSVSDSREMISGLLGELMR"
     gene            complement(2626..3051)
                     /locus_tag="VF788_11400"
     CDS             complement(2626..3051)
                     /locus_tag="VF788_11400"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8934772.1"
                     /translation="MIDTDWSPHVSPCSSGTPAITVALSWPQPDTTLCTVTGAVDWNT
                     TPLVRDALTEARRDDNVHLVIDLSAVTSMDSAGPYTLLEARFKHQLNGGGHLAVIADP
                     NSHAIPELQIVALKAAFDFHASLPEALHACASAGTSSGH"
     gene            3421..3738
                     /locus_tag="VF788_11405"
     CDS             3421..3738
                     /locus_tag="VF788_11405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934773.1"
                     /translation="MAGITITRDRGHVLDFSYPMFSAGLEVMTTRRGSPSNWLGKLAS
                     FVTAGVWRYLLALLVDLIIAGGGPARYPASYRAIRRRTQLGYLAGVGLAIQGHRCITA
                     NVS"
BASE COUNT          804 a         1254 c         1413 g          971 t
ORIGIN      
        1 aggtgatacc gatttattct gctgcacacc cggcagtggg tggtccgttt tcgatcttgc
       61 gcttctccga ccaggatcta ccggatatta tttatcttga gcagctgtcc agtgcagtct
      121 acctggacaa gaatgaggat attcagcgct atcggtcaat catggaccgg ctatgcgtgc
      181 aggctaagtc gccctccgaa acaattaagt tcttcaatag tatgctcaaa gagtcctgag
      241 ctttgagtcg ggcaacgatt ccaccaaacg caacattcgt gcacctcgac acgaggatca
      301 cactgtcgat ttccgctggc ccaactgttg cacgtcggga cattccgggg acggctgccg
      361 ggaggtacga gccggcctgt tccatggatc ctactgtttg agctgttgct gggcgctgat
      421 ggtgttactc atcgcctttg gcgtgttgaa cgtcaccgcc atggtgattc tggccttttc
      481 gcgcatgact gggatgatgg cgttgggttt ggctgttgct gtggtgtggc ggcaaggcct
      541 ggcagcggtc ttgatagtgc acgagccgtg atgagtctga caggcggcat gtaggcactg
      601 tcacagcgac aacagtccat agtttcagat ggcttggcgg tagtgtctag gttcagctag
      661 acaccgatgc caacgaggcc acgattcgtg acatgcaccc acgcgttctc atcgtattgc
      721 tccgggtagt tatcggccgc acctcttaca gaggagccca ctccacgtgc cgtcgacgga
      781 aacgcccgtg gcactcatag cggcggtcat ggcgcggact tctttgtcgc cgcgatgcgc
      841 ttgactttaa atatgcagcc atgggatcca gctccgtctc ctgggcgggt accaaggcaa
      901 gcctgagggg cctataccat tcggtcattt cgtccagctc tcctccttca cgcctcggat
      961 gaaagcggcc acctcagcgc aggcgaccat gaggatagca ccgtctgaat tccgggagtg
     1021 acgtatggcg atcttcccgc ctgccagtcc tctcaattcc acacagtccc cgctggggtt
     1081 actgtgactg ctctttctcc aggaagcact gaaaagcggg atggtccgca tgacacgcgc
     1141 gattggtgac atctctgacc tatccatggt cctcctctgc catcccgtca aagcgggcga
     1201 acagcccgaa cgggctgata gcagcgggtg tacatacacc cgcacgaacg ttcagtgaaa
     1261 ttgcatgcta gtgcatctgt tcttgcatcg gcacgagatg actgcgacgg tggtccccgc
     1321 tgttgctgaa ctgccaagcc aagtggaggc tttgcatcat gcgcttgcca gcatgagcac
     1381 cgcgcggatg cccgagggtg gtcgatctgt gaggctgccc cgttgttcgc gccgctctcc
     1441 ggcagcgccg tgcagttcgc cactgaggcc gtcgtgtggg catatgaggg gccgccgcag
     1501 tgggcgctgc gggtcttact caagctagta cacccccagc acccccacgc ccccgtccgc
     1561 gcttaccctg ttccccacac cggcgcgtca gtgagatgat catcccgatg agacattgga
     1621 tgagcaaaag gctatccaca cataaggcac acgacagcca gtgtttccgc ggtcgatcga
     1681 ctggaagtgc aaagcaggca ctttcagccg gcggtaaggc cgttgcttgc ccggcgggcg
     1741 atggcaccac tgccggcgac ccatgagcag gccactgtcc gcctcgagga gattgactcc
     1801 gggcggaacg ctgcggcgac agtgcgatac aggcggcctc gtctacgtag attgtgcgga
     1861 actccgcatg cccagggaca ctacaaaggc gcttcatcgg ctcgcggccc actggtcatt
     1921 cgccgcattc atgctcagcc ggctgtcgcg gttggaagtg ctcagccagc gtagcgacgg
     1981 cgtcagccgt tgatcgcttg gctagaaata gctgtcctca atgaccctgt acaggaagac
     2041 tagggtgcta gtgggcgact tccacttgaa tgtcgctgtt ccacctgaat caatgagggc
     2101 gctcttcggc gtgttgtcag tggcggggac gtgatgtgcg ctcagctgac tcgttgatcg
     2161 aggcggtcga actgcccaac gtggcactgc gggtgttgcc ttttgctgcc ggtgcccacc
     2221 ctggcatgga tgggtcgttc accgtgctgg aattctccga tgccagcaac ccgcggattg
     2281 tttatctgga ccggatgaca gacagtgaat acctcgatgg cctacgggac gttgcggcgt
     2341 atcgtcacgc acacgagcgg ctacgggcgt ccgcgctgtc ggtgagcgat tcccgggaga
     2401 tgatcagcgg actgttgggg gagctgatga ggtgagtagg gatgacgccc tcggctcggt
     2461 atgcgccatg atcacgacca tgtcggacgc tgaggccagg cacggatcac gacgctaggt
     2521 gcagcggccc ctgccaccgt tgtaccgctt gccggatacg gggatgaacc gtgagctgcg
     2581 ctcgctgagt ggtgagcagg tcgagtgaat gccgtcctag ttgtgttaat ggccgctgct
     2641 ggtaccagcg ctggcgcagg cgtggagggc ctcgggaagg ctggcgtgga agtcgaaggc
     2701 tgccttgagc gcaacgatct gcagttctgg gatggcgtga gaattcgggt cggcgatgac
     2761 cgctagatgt ccgccgccat tgagttggtg tttaaaacgg gcttcgagca acgtgtaggg
     2821 accagcggag tccatggagg tgacggcgga caggtcgatg acgaggtgga cgttgtcgtc
     2881 tcgccgtgct tccgtgagtg catctctcac cagcggcgtg gtgttccaat ccaccgcacc
     2941 ggtgacagtg cacagtgtcg tatcaggctg gggccaactc aatgccacgg tgatggccgg
     3001 cgtccctgaa gagcagggtg agacgtgcgg ggaccagtcc gtatcgatca tggtccaact
     3061 cctgtccccc ggatgcgtgg agacaacggt acacagccgg aaacggcatc aatgacacag
     3121 ggtgaccgtg ccgtctcgtg tatgcaattt acactgccac gcctcctacg acaatatgca
     3181 atttcactga ctgtgcaatt tcacgtactg gaggtggtca tacccggctg gtcgagcgcc
     3241 cagtattacc ctccgtgacg atatgtaacg ttgcgcagcc gaaagcgatt acagcggctg
     3301 ggggcccgat ccatactcct tggcaggtga agccttgact acgagcactg tgtcgttact
     3361 gtcggttagc gcaccgcaca gtcccctcct gtgcctgact ccgccagcga gattcgtggc
     3421 atggccggga tcacgatcac cagggaccgc gggcacgtgc tggacttcag ttatccaatg
     3481 tttagcgccg ggctggaagt gatgaccaca cgtcgtggta gcccgtcgaa ctggcttggc
     3541 aagctggcca gcttcgtcac cgctggagtg tggcgctatc tgctggcgct gctggtcgac
     3601 ttgatcatcg ccgggggtgg tccagcgcgc tatccggcgt cgtaccgcgc tatccggcgt
     3661 cgtactcagt tgggctacct cgccggcgtc gggctggcga tacaagggca ccgttgcatt
     3721 acggcgaacg tgtcctgacc atgtccctag gtcgagcggc cggtgcctca tgacccttaa
     3781 agaacctcac aaaccgaaca tatgcgggct tgccacgggg ctccaggacg ggcaaataaa
     3841 tcgggacgag tggccgatcg cttaatgcga cagtgccgag ccggcccatc cgggatggac
     3901 gttactgatg agtaaccagt gggggaaggt tttgggcaga acgaggttcg tacgcaggtt
     3961 actgcgtggt cggtgccggc atggtgggtt cgggtcggtg gggagtggct gggtgcggac
     4021 catgagggtt gacccgggtg tgtatgtgac cggttacgac cgtgtcggct ggaacttgcc
     4081 catccatggt gatgtatctg gcccgtaccg ctcaagaatt gatgtggtct ggcatggcga
     4141 gtgttgcggg cagctccgtt tcgttcgtgg aggttggctg tcccgctacg ttttcctgat
     4201 gtggggtggt ttttgtgcgc gcgtggtcgt atttgcgttt cgtgatccag caagccagga
     4261 acccccggtg ggccgccgct agttctggtg ctcatgcgcg gaatctccca gcggttcgtt
     4321 ctagccgtca gaagttttgg ccccggtgct cgagtcctgg atgtggtcgg caggtgcccc
     4381 cggaggcggt ccatgatatg tgtcggcgcg cgggcccgta tgtggcattg attcgggcac
     4441 ct
//
LOCUS       DASVXZ010000551         4734 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_687081, whole genome shotgun sequence.
ACCESSION   DASVXZ010000551 DASVXZ010000000
VERSION     DASVXZ010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4734
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687081"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VF788_11410"
     CDS             complement(<1..312)
                     /locus_tag="VF788_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="globin"
                     /protein_id="HEX8934774.1"
                     /translation="MAAPENFYEAVGGEQTFRRIVGRFYELVAKDEVLRPLYPGEDLE
                     PAEERLRLFLMQYWGGPHTYSAQRGHPRLRMRHVPFRIGPAERDAWLRCMRTAVDEAD
                     LD"
     gene            complement(356..1333)
                     /locus_tag="VF788_11415"
     CDS             complement(356..1333)
                     /locus_tag="VF788_11415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEX8934775.1"
                     /translation="MIFPLVFQPDCSRDEGSWCARIYQLTQNDLLSRYADTVVGTGLR
                     ILLILVLAVLIRLMAHRAIKRLSQVTAEGPPPGLLRPLRERAPDSWLGTGMLSTRRSQ
                     RARTIGSVLRSGTTLVVYGVAFTLVVGELGINLGPIIASAGILGIALGFGAQNLVKDF
                     LSGMFMLVEDQYGVGDVVDLGEASGTVESVGLRVTTLRDTKGTVWYVRNGEVLRVGNS
                     SQGYSVAVVDLPIGHDADISTSTELAGRTATELTADGSALAADVLEPPQVLGVESISS
                     DGVTLRVTTKVHAGRQWAVQRALLAGIKAAFADAGIPPPAPASHIAPPS"
     gene            1500..2183
                     /locus_tag="VF788_11420"
     CDS             1500..2183
                     /locus_tag="VF788_11420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEX8934776.1"
                     /translation="MHDRQPSPEGHPAGADQRTASRSGTSTGLLETTVLVANQAVASQ
                     TVADQRRATGAPTWGRRRVLLLNASFEPLTALPLRRAVVLVVCGKADVVHGDAAGLVL
                     HSATASVVAPSVIKLCTYVRVPYRARVPMTRAALMHRDRYRCGYCGARAETIDHVVPR
                     SRGGEHCWENCVACCALCNHRKADRLLSELGWKLRATPRAPRGQHWRLLATVPDADPL
                     WLPYLGEVA"
     gene            2228..3649
                     /locus_tag="VF788_11425"
     CDS             2228..3649
                     /locus_tag="VF788_11425"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX8934777.1"
                     /translation="MADLHELTALEQAAVVRRREVSPSELVEHHLGRVEERSTQLGAF
                     VTVTADQAMDAARAADLLVTRADPGELPPLLGVPTAIKDLTMTAGIRTTFGSVIYARY
                     LPSIDDDVVGFLAAAGTISLGKTSTPEFGLCCYTEPAGLPPAVTPWDTSRSAGGSSGG
                     AAAAVAAGLVPFAQATDGGGSIRGPAAACGVVGLKPSRGRISRGPAAGDGFLSVIGPL
                     ARSVEDAAALLDAMATPCPTEPVIAPPLPAGQSFLEHARRESGRLRIGRYADSPLPGV
                     ELAPECRRAWEDTAALLAALGHDVVDTVSPFDREVLLPPFEALWAVGATSVPVPEDAQ
                     SALLPFTRWLRELGASVSGPDLLRAMGQVQCAGRAAIAAHLEFDAVLTPTLAQLPPPV
                     GWFSSVPPAENFERQKRFIPYAALYNVTGQPAVSLPMHWTGDGLPVGIQLVGRPGGEA
                     VLLALAGQLERARPWAHHRPPTW"
     gene            3685..3936
                     /locus_tag="VF788_11430"
     CDS             3685..3936
                     /locus_tag="VF788_11430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934778.1"
                     /translation="MTSLEVILVLAGVPLAIMVLLGLLTLRAAFARPRRYRPGDEWNY
                     PPVLWTANPETLGGGMSVHHAHHGREGSGGTRGGARGNW"
     gene            3956..4426
                     /locus_tag="VF788_11435"
     CDS             3956..4426
                     /locus_tag="VF788_11435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019809447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5130 family protein"
                     /protein_id="HEX8934779.1"
                     /translation="MRRDHVRDDDFQRELAPGEAIVGTGRISAARQVRPVLRTLPFSR
                     SQLAKLDDALVRASRTASLHFGIYLGDLGSDTRIRAEELHDSMGEWADDAVLVAVSPG
                     QRVVEVVTGCKVTSRLPDRGCKLAVESMVSSFKDGDLAGGLSSGLRMLADHTDS"
     gene            complement(4452..>4734)
                     /locus_tag="VF788_11440"
     CDS             complement(4452..>4734)
                     /locus_tag="VF788_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ERAP1-like C-terminal domain-containing protein"
                     /protein_id="HEX8934780.1"
                     /translation="GFQHPAHKQLLAPYLDRYFTEIADMWHRRTSERAQSCVTGLFPS
                     WVIEQRCADAAATWLETNEHPPALRRLVSEGRAGVVRALAARLKDAGRS"
BASE COUNT          735 a         1573 c         1631 g          795 t
ORIGIN      
        1 gtcgaggtca gcctcgtcga ccgcggtgcg catgcagcgc agccaggcgt cacgttcggc
       61 cggcccaatc cggaacggga cgtgccgcat ccgcagccgc gggtgccctc gctgcgcgga
      121 gtaggtgtgt ggcccacccc agtactgcat gaggaacagt cgcaggcgct cctcggcggg
      181 ttccagatct tccccaggat agagcgggcg cagcacctca tccttcgcca ccagctcata
      241 gaagcggccg acgatccggc gaaacgtctg ctcgccgccg acggcctcat aaaagttctc
      301 cggagcagcc acctttccat cctgccttgc cggctaccgt ttgggggagg aggcgtcagg
      361 acggcggggc gatatggcta gcaggggcgg gcggggggat cccggcgtcg gcgaatgctg
      421 ccttgattcc cgccaggagt gcccgttgga ccgcccactg ccggccagcg tgcaccttgg
      481 tggtgacccg cagggtcacg ccatctgaac tgatcgattc gactccgagt acctgggggg
      541 gttcgagcac atcggcggcc agcgcgctgc catccgcggt gagctcggtg gcagtgcggc
      601 cggcgagctc agtggatgtc gagatgtcgg catcgtgccc gatgggcaga tcgacaaccg
      661 ccaccgagta gccctggctg gagttgccga cccgcagcac ctcaccgttg cggacatacc
      721 acacggtgcc cttggtgtcc cgcagggtgg taacccgcag cccgaccgac tccactgttc
      781 cgctggcctc accgagatcg accacgtcgc cgaccccgta ctggtcctcg accagcatga
      841 acatcccaga caggaagtcc ttgaccagat tctgcgcgcc gaaccccagc gcaatgccca
      901 ggatgccggc cgaggcgatg atcggcccga ggttgatccc cagctcaccg accaccaggg
      961 tgaacgcgac cccgtagacc accaacgtgg ttcctgagcg cagcaccgag ccgatcgtgc
     1021 gggctcgctg agatcgccgt gtcgagagca ttccggtgcc cagccaggaa tccggggccc
     1081 tctcccgcag cggtcgcagt aatccgggag gcggtccctc cgccgtcacc tggctcaatc
     1141 gcttgatagc ccggtgtgcc atcagccgga tcaggaccgc gagtaccagg atcagcagga
     1201 tccgcaaccc ggtccccacg acggtatcgg cgtagcggga cagcaggtca ttctgcgtga
     1261 gttggtagat gcgtgcgcac catgagccct cgtcgcggga gcagtcgggc tggaatacca
     1321 gtgggaagat catctggtgg gcacctccgg tcaaccgccg gactttagcc ggagtcccat
     1381 ggcgaccacc tctggtggcc ccctcaacgg gcggtgaccg acacgcggca gtagccgaca
     1441 cgtgcatgat ggctgccctt tatggtgaac tggtcgcgcg cattggcgga ggtggtcgcg
     1501 tgcacgaccg acaacccagc ccggagggtc acccagcggg ggcggaccag cggaccgcct
     1561 cgcgctcagg aacctcaacc gggcttctcg aaaccactgt cctcgtcgcg aaccaggctg
     1621 ttgccagcca gacggttgct gatcagagaa gggcgaccgg tgcgccgacc tggggacgcc
     1681 ggcgggtctt gctgctcaat gccagcttcg agccgctgac cgccctgccg ctgcgccgag
     1741 ccgtcgttct ggtggtatgc ggcaaggctg atgtcgtgca tggcgacgcc gcgggtctgg
     1801 tgttgcactc cgcgaccgcc agtgtggtgg ctccctccgt gatcaaactg tgcacctacg
     1861 tgcgggtgcc ctaccgggcg cgggtcccga tgaccagggc cgcgttgatg catcgtgatc
     1921 gttatcgttg cggctattgc ggagcgcgcg cggagaccat cgaccacgtg gtgccgcgca
     1981 gccgcggcgg cgagcattgc tgggagaact gcgtggcctg ctgcgcactg tgcaaccatc
     2041 gcaaggccga ccggctgctc agcgaattgg gctggaagct gcgggcgacg ccgcgcgctc
     2101 cgcgcgggca gcactggcgg ctgctggcca cagtgcccga cgctgacccg ctgtggttgc
     2161 cctacctcgg cgaagtcgcc tgatgcagtt agggagcggg gcctccgctc gcccgtaggg
     2221 tgaatctgtg gcagacctgc atgagttgac cgccctggaa caagccgccg tggtgcgtcg
     2281 gcgtgaggtg agtcccagcg agctcgtcga gcaccacctc ggtcgggtgg aagagagaag
     2341 cacgcaatta ggcgccttcg tcacagtcac cgccgaccag gcgatggacg cggcccgggc
     2401 ggcggatctt ctggtgaccc gggccgatcc aggcgagctg ccgccactgc tcggtgtgcc
     2461 gactgcgatc aaagatctca ccatgaccgc ggggatccgc accactttcg gctccgtgat
     2521 ctacgcgcgc tatctaccgt cgatcgacga tgatgtggtc ggtttcctgg ccgccgccgg
     2581 gactatcagc ctgggcaaga caagcacccc tgagttcggg ctgtgctgct acaccgagcc
     2641 ggccggcctg ccgcccgcgg tgactccctg ggataccagc cgctcggccg gcgggtcctc
     2701 cggcggggcc gcggccgcgg tggccgctgg gttggtgccc ttcgcgcagg ccacagacgg
     2761 cggggggtcg atacgtgggc cggcggcggc gtgtggcgtg gtgggtctca agcccagccg
     2821 cggacggatc tcccgcggcc ccgctgcggg cgatgggttc ctctcagtga tagggccact
     2881 ggcccgttcc gtggaggacg ccgccgcgct gcttgacgcc atggcaacgc cctgcccgac
     2941 cgagccagtg atcgcgccgc cgctgccggc ggggcagagc ttcctcgagc acgcgcgccg
     3001 ggaatcggga cggttacgca tcgggcgtta cgccgattct ccgctgcccg gcgtcgagct
     3061 ggccccagag tgccgtcgag cctgggaaga taccgctgcc ctgctggcgg cgctaggcca
     3121 tgatgtggtg gacacggtct ctccgttcga ccgggaggtg ctgctgccgc ccttcgaggc
     3181 gctctgggca gtgggtgcta cttcagtgcc ggtgcccgag gatgcgcaaa gtgcgctgct
     3241 gcctttcacc cggtggcttc gggagttggg ggcctcggtc agcggtccag atctgttgcg
     3301 ggcgatgggg caggtccagt gcgcgggtcg ggcggcgatc gcagctcatc tggaattcga
     3361 tgcggtgctc acccctacat tggcgcagct gccaccaccg gtcgggtggt tcagttcggt
     3421 acctccggcg gagaatttcg aacggcagaa gcgattcatt ccttacgccg cgttgtacaa
     3481 cgtcaccggc cagcccgccg tctcgctgcc gatgcactgg accggcgacg ggctcccggt
     3541 ggggatccag ctagtaggtc gaccaggcgg agaagcagtg ctgcttgcgt tggccgggca
     3601 actggagcgc gcccgaccgt gggcgcatca ccgaccgcct acctggtgag gtaaccgtgg
     3661 gcttcggtca gctaccgtga tctcgtgaca tcgctggagg tcatcctcgt tctggcgggc
     3721 gttccgctgg ccatcatggt tttactaggg ctgttgacgc tccgggcggc cttcgctcgg
     3781 ccgcgccgct accggcccgg tgatgaatgg aattatcccc cggtgttgtg gacggcgaat
     3841 cctgagacct tgggtggcgg catgagcgtc caccacgccc atcacggccg tgagggatcc
     3901 ggtggaaccc gtggaggtgc ccgtggcaac tggtgacgag caacacgccg accccgtgcg
     3961 gcgcgaccac gttcgagacg acgacttcca gcgcgaactc gcccccggcg aggctattgt
     4021 cggcacagga cggatctccg cagcgcgaca ggtcaggccg gtgctgcgga cgctgccctt
     4081 cagccgttca caactcgcga aactcgacga cgcgctggtc cgggccagcc gcaccgcgag
     4141 cttgcacttc gggatctatc tcggcgacct cggctccgac acccgcatcc gggccgagga
     4201 actacacgat tcgatggggg agtgggctga tgacgcggtg ctggtggccg tctcacctgg
     4261 ccagcgggtt gtcgaggtgg tcactggttg caaggtcacg agtcggcttc ccgaccgtgg
     4321 ttgcaagctc gcggtggaga gcatggtgtc ctcgttcaag gatggcgacc tagcgggagg
     4381 tctgagctcc ggactgcgaa tgctggccga tcacaccgac tcgtgagtgc gagggttaac
     4441 acgcttcgca ctcacgagcg gcccgcgtct ttgaggcggg ccgccaacgc ccggaccacc
     4501 ccggcccgac cctccgacac caaccggcgc aacgcgggcg ggtgctcatt cgtctccagc
     4561 caggtcgctg cggcgtccgc gcagcgttgc tcgatcaccc acgaggggaa gaggccggtc
     4621 acacatgact gcgcccgttc ggaagtccgg cggtgccaca tatcggcgat ctcggtgaag
     4681 taccggtcca ggtagggcgc cagcagctgc ttgtgcgcgg ggtgctggaa accc
//
LOCUS       DASVXZ010000552         2217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_568101, whole genome shotgun sequence.
ACCESSION   DASVXZ010000552 DASVXZ010000000
VERSION     DASVXZ010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568101"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(841..1077)
                     /locus_tag="VF788_11445"
     CDS             complement(841..1077)
                     /locus_tag="VF788_11445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8934781.1"
                     /translation="MGTGDKIKGKVKEAVGSVTGSDHLRKEGQAQQHKGHHEQKAAEA
                     RAVADKHELQAELFEDEERARQGVRRDMPNEPEV"
     gene            1209..1502
                     /locus_tag="VF788_11450"
     CDS             1209..1502
                     /locus_tag="VF788_11450"
                     /inference="COORDINATES: protein motif:HMM:NF024776.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934782.1"
                     /translation="MSDPLSDCAVRRRLAVLRHGEEVSGNVTMTCHYFGTSRQLYFTW
                     LRRYRAEGLEGCGISPGGSSPVRQATHTEVVDGPGFRGCDLLSSPVAGGASTR"
     gene            complement(1593..1832)
                     /locus_tag="VF788_11455"
     CDS             complement(1593..1832)
                     /locus_tag="VF788_11455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934783.1"
                     /translation="MENFRRVPGRKLALAITSSPQIGTGSGRGARKPAVSLTVPARIV
                     QATDDQRVRANPSAPLNGTDQLVTELQDKAAVDSP"
     gene            complement(1956..>2217)
                     /locus_tag="VF788_11460"
     CDS             complement(1956..>2217)
                     /locus_tag="VF788_11460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934784.1"
                     /translation="RTALRGSVLALCTASALTLGVGAASASTLTPAPQAAAISSSHPP
                     DCWDCDGWRHHGDWRCYGDGWGYYCDGWRYHGGWHCHGDCWD"
BASE COUNT          389 a          710 c          693 g          425 t
ORIGIN      
        1 cgaccgaggg tcggtcggcg gccacctcga ccagtttgtg ctgttgggga accctcgagg
       61 tcacgaacgc ggtccccaca ccaggacgag gacgaccgtt aacgcgtacg tccgcacggc
      121 cggaccagca ccagcaccac aacaagcatg ccgaccgacg cggcggtcgt gcggtccggg
      181 ccgactcggt cggtaaccac cccggaccct gccaaccact caacgcgcga gggcgaaatg
      241 ctgattgtgc cccggcggcc cgcgcggcct tagcaccgtg atgtcaaccg tgagtgctcg
      301 cacgcttggt gcaggtcgtg gtacgcgtcg atgtccgtcg cggtcgcgtg tgcggagccc
      361 agacttccaa tcagtgccgt ccgcgtataa caccggtacg tcgacccgtt cgcgctcgga
      421 gtcgtgaaac tctggctcgt aaccctcggc aatatattgc gtgatcctgc ccgggcgaga
      481 agccgacggg tgtagccctc gcggtactca gcagaaattg ccttcaatgc gagccgaaca
      541 cctcgcctgc gcgcgccagg ccagcggcag cgtgttaggt gggtgagcct cacccggcga
      601 cccctgcccg tgtccagaaa ccgcactttc caagaacgac agacctctac tcctcaacac
      661 ccacagagcg ctgtatccgg ttcttcgggc ggcacttatc ctaaatcggt caccaaagcg
      721 cacccaagac tctcgcgtgg atcttaaact ccagcgccga ctcaggaagt tagatcagta
      781 gcgtgagctc gtcctaggca acggggccct atcgcattga gagagctggc cccgcgctag
      841 tcacacttca ggctcattcg gcatgtcacg tcggacaccc tgccgtgccc gctcctcgtc
      901 ctcgaaaagc tcagcctgga gctcatgctt gtcagccacc gcgcgtgctt ccgcagcttt
      961 ctgttcgtgg tggcccttgt gctgctgcgc ttggccctcc ttacggagat gatcgctgcc
     1021 ggtgacgctc ccgaccgcct ctttcacctt gcccttgatc ttgtcgccag tacccatctt
     1081 ccttaacctc tcagctcgac tacgaagact gagtaccccc gtagcgatga tttgaagcag
     1141 tcccgcttcg gtatggcaac gcaaccggcc ggtttgtcag cacacggacc tcaagatcgg
     1201 ttcccggcat gagtgatcca ttgagtgatt gtgcggtgcg tcgtcggttg gccgtgttgc
     1261 gtcatggcga ggaggtcagc ggcaatgtca cgatgacctg tcactacttc gggaccagcc
     1321 gccagctcta cttcacgtgg ctgcgccgtt accgtgctga gggcctggag ggttgcggga
     1381 tcagtcccgg cggctcaagt cctgttcggc aggccacgca caccgaggtg gtcgacggac
     1441 cgggcttccg ggggtgcgac cttcttagct cgccggttgc aggaggggct tcaaccaggt
     1501 gatgaggtgg ggcagatcat ggttgatggt ggcgaagtga acaccgagtt gctcatctgg
     1561 cgtgatctcg ccttcgggat agcgctgtta gatcaggggc tgtccactgc tgctttatcc
     1621 tgtagttcgg tgactagctg atcagtgccg ttgagcgggg cggagggatt ggcccggaca
     1681 cgctgatcgt cggtggcctg gacgatgcgg gcgggcacgg tgagactgac cgcgggcttc
     1741 cgggcacctc ggccactgcc cgtgccgatc tggggtgagc tggtgatcgc gagagcaagt
     1801 ttgcgaccgg ggacacgccg gaagttttcc aaggctagat ccgcgaaagc cccgataagg
     1861 gcacagcggt atcggggctt tcgcttgttg acggattagc cgccgctaac ggcgaacatg
     1921 ctcaccgatg gtcccagcgg tggccatcac catcatcagt cccagcagtc gccgtgacag
     1981 tgccagccgc cgtggtagcg ccagccatcg cagtagtagc cccagccgtc cccatagcag
     2041 cgccaatcgc cgtggtggcg ccagccatcg caatcccagc agtccggggg gtggctagag
     2101 ctgattgcag ccgcctgcgg agcaggcgtg agcgtgctgg ctgacgccgc gcctactccg
     2161 agcgtcagag cgctagcggt acagagcgct aggacactcc cgcgaagtgc tgtccga
//
LOCUS       DASVXZ010000553         2132 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1464564, whole genome shotgun sequence.
ACCESSION   DASVXZ010000553 DASVXZ010000000
VERSION     DASVXZ010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1464564"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..122)
                     /locus_tag="VF788_11465"
     CDS             complement(<1..122)
                     /locus_tag="VF788_11465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8934785.1"
                     /translation="MDSSVAVVGAGVIGLSCAWRAACAGFVVTVYDAAPGSGASR"
     regulatory      complement(116..227)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            243..914
                     /gene="thiE"
                     /locus_tag="VF788_11470"
     CDS             243..914
                     /gene="thiE"
                     /locus_tag="VF788_11470"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEX8934786.1"
                     /translation="MPSCDMDGEQIRSRLADARLYLCTDARTDRGDLAGFADAVLTGG
                     VDIIQLRDKTLEARPEFVALEVLADACSRHGALLAVNDRADVALAAGAQVLHLGQDDL
                     PVSWARRILGEEVAIGRSTHEPRQAADAAIEPGVDYFCTGPCWSTPTKPGRRAAGLEL
                     IRSTAASHPGRPWFAIGGIENLQRLEEVRNAGADRVVVVRAITEAADPQSAASMFAQR
                     LRPSR"
     gene            complement(934..1821)
                     /locus_tag="VF788_11475"
     CDS             complement(934..1821)
                     /locus_tag="VF788_11475"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 family peptidase"
                     /protein_id="HEX8934787.1"
                     /translation="MGLLLSVGIALPASAAAGPATTAHQVAFPDLPMLHAVMTVLDSR
                     SQRVPNSVTSWYVDPATHSVVVSATDDDAARAFTAGQPGVRIQHVTTRPATLADLHGG
                     DTITTSEGGRCSVGFNAISGHTRYLVTAGHCTKLGGTWSGPDGKPIGPAAKSSFPGHD
                     YGLVEVASSGWEQTNEIDTDSGYVSVAGITPAQLGDRVCLSGSTSGYHCGTVEAVNET
                     VNYGEGNVVNGLTRTSVCAEAGDSGGPFMSGNQAQGTLSGGSGGCLLGGKSYFQPIRE
                     VLATYGLTLLTGREARDER"
     gene            complement(2026..>2132)
                     /locus_tag="VF788_11480"
     CDS             complement(2026..>2132)
                     /locus_tag="VF788_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007033445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3159 domain-containing protein"
                     /protein_id="HEX8934788.1"
                     /translation="LSWPLVAACIAVSGAVLVRVLPADHPGLRTVRRS"
BASE COUNT          354 a          739 c          705 g          334 t
ORIGIN      
        1 cgcgaggcac ccgatcctgg cgcagcgtcg tagacggtga ccacgaaccc cgcgcacgcc
       61 gcgcgccaag cgcaactcaa tccgatgact ccggcaccga ccacggcaac actgctatcc
      121 aagacttcac gctccctgcg ccggcatgac ccggatcagg ttcgacggtc ggggtcgcca
      181 tgaccccctc tcagcccggt gcggcccggg ctcccgtgcg gaccacctcc caccgtacct
      241 cgataccgtc ttgcgacatg gacggcgagc agatccggtc ccggctggcc gacgcccggc
      301 tgtacctgtg caccgacgcc cggactgacc gaggcgatct cgccggattc gccgacgcag
      361 tgctaaccgg cggcgtggac atcatccagt tgcgagacaa gaccctggaa gcgcgccccg
      421 agttcgtcgc cctggaggtg ctcgccgacg cctgctctcg acacggtgcc ctgctggcgg
      481 tgaacgaccg tgccgatgtc gcgctggccg ccggcgcgca ggtgctccat ctgggccagg
      541 acgacctgcc ggtgagctgg gctcgccgga tactcggcga ggaggtggcg atcggccgtt
      601 ccacgcatga gcccaggcaa gccgccgacg ctgcgatcga gcctggggtg gactacttct
      661 gcacgggccc ttgctggtca acccccacca agcccggccg tcgcgccgct gggctcgagc
      721 tcatccgcag caccgctgcc tcgcatccgg gccgcccgtg gttcgccatc ggcggtatcg
      781 agaacctgca acggctggag gaggtgcgca acgccggtgc ggaccgagtc gtcgtggtgc
      841 gggcgatcac cgaggctgcc gacccccagt cggcagcctc catgttcgcg caacgcctgc
      901 gaccgtcgcg ctagcgcttc gcgacgcgag ctgctagcgc tcgtccctgg cttcccgacc
      961 ggtcaggagg gtcagcccgt aggtggcgag cacctcccgg atcggctgga agtaggactt
     1021 gccaccgagc aggcaaccgc ccgacccgcc ggacagcgtg ccttgggcct ggttgccgct
     1081 catgaagggg ccaccggagt caccggcttc ggcgcagaca ctggttctgg tgagcccgtt
     1141 gacgacattg ccctcgccgt agttcacggt ctcattgacg gcctccactg tgccgcagtg
     1201 gtagccgctg gtagacccgg acaggcatac ccggtctccc aactgtgctg gagtgatacc
     1261 cgccacggag acgtatccgc tgtcggtgtc gatctcgttg gtttgctccc agcccgacga
     1321 tgccacctcc accaggccgt aatcgtgacc tgggaacgag gacttcgccg caggaccgat
     1381 gggtttgcca tccggcccgg accaggtgcc acccagcttg gtgcaatgcc ctgccgtgac
     1441 gaggtaacgg gtgtggcccg agatggcgtt gaaaccgacc gagcagcggc cgccctcgct
     1501 ggtggtgatc gtgtcgccgc cgtgcaggtc tgccagcgtg gccgggcggg tggtgacgtg
     1561 ctggatacga acccctggct gaccggcggt gaaggctctg gcagcgtcgt catcggtggc
     1621 cgagaccacg accgagtgag tagccgggtc gacgtaccag ctggtcaccg agttcgggac
     1681 gcgctgcgac cgcgaatcca gcaccgtcat cacagcgtgc agcatcggca gatccgggaa
     1741 cgccacctgg tgtgcggtgg tagccggccc cgcagcagca gaggcaggta gcgcgattcc
     1801 cacgctgagg agtaggccca agacaacagc aaggagtgag cgagggcggc ttccggggag
     1861 cacgaaatcg agtcctctcg ttcaagggcc aattcccatc agtccccgac ggtagctcta
     1921 cgctacggaa cagttacgca ctggtgaagg caccaatcgg ggagacttga tacccatacg
     1981 gtgggtgctg gactcactac tcgtagtgcg cgatccgttg cggcgtcagg atcgccgcac
     2041 tgtacgcagg cctggatggt cggctggcag cacccggacc agcaccgccc cgctcaccgc
     2101 gatgcaggcc gctacgagtg gccagctcag ca
//
LOCUS       DASVXZ010000554        16903 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_867593, whole genome shotgun sequence.
ACCESSION   DASVXZ010000554 DASVXZ010000000
VERSION     DASVXZ010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 16903)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16903)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16903
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_867593"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VF788_11485"
     CDS             complement(<1..294)
                     /locus_tag="VF788_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007031350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEX8934789.1"
                     /translation="MREVLDELVTEWRQGKSTALGTVVSTYRSAPRPAGASMLVTSDE
                     RAVGSVSGGCVEGAVFELGQQVLADDTPVLQRYGVSDDDAFTVGITCGGIIDVF"
     gene            complement(428..1012)
                     /locus_tag="VF788_11490"
     CDS             complement(428..1012)
                     /locus_tag="VF788_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005455056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX8934790.1"
                     /translation="MIAGLLLAAGAGRRYGMPKALVDGGAWLRRAVTALSDGGCDPVL
                     VVVGAQAAEVIPLVPDTAATVLAVDWAEGMGASLRAGLAELIRSAPPPVQAALVHLVD
                     LPDVDASVVRRLVALANPTVVARAGFESQPGHPVLLGRQHWAAIVDSAQGDRGARDWL
                     AQRSDLTVVDCSDLASGIDVDRPRPCPPSASGQH"
     gene            complement(1150..2088)
                     /locus_tag="VF788_11495"
     CDS             complement(1150..2088)
                     /locus_tag="VF788_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC N-terminal beta barrel domain-containing
                     protein"
                     /protein_id="HEX8934791.1"
                     /translation="MRPAADRHRRAYQSAGELALALNQEDGEPAFMVLTLTGINRYPI
                     KSCRGQAVREAVVEPWGLVGDRRWMLVDEQGRVMTARKHPQLVLVTPQPNPAGLLVQA
                     PEVDTLLVDTPEGAELCDVQVFASVVAASLAAEQANAWFSKVVGEPVRLVYLDDPTRR
                     RPNPQYSRAGDRVSFADGYPLLLATEQSLVALNDLIAEGPRSAEGPMSMTRFRPNLVV
                     AGAAAWAEDGWRVLRVGAARFRAVKSCDRCVLTTIDPSTATKGREPLMTLARHRRWDG
                     KTWFAINLIPDSPGVTLRVGDEVDVLEQVETAEPLR"
     gene            2245..2907
                     /locus_tag="VF788_11500"
     CDS             2245..2907
                     /locus_tag="VF788_11500"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017982404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEX8934792.1"
                     /translation="MIEELDPHITPQLDHSALLVIDTQVDFVDGGAFPVPGTTQVVPA
                     ITRLIQTYRTAQLPIVHVIRLYDGADVDLARRTLIASGAPIARPGTAGSQIVPELRPD
                     PAVTLDPDVLLGGECQALAGQEWAMWKPRWGAFHRTPLDHHLRTLEVSTVVIAGCNYP
                     NCPRAAVYGASERDYRVLVVSDAISGIEPHHLEEASRMGIVCAPTSDVTTYIKRGHRL
                     RQ"
     gene            complement(2934..3956)
                     /locus_tag="VF788_11505"
     CDS             complement(2934..3956)
                     /locus_tag="VF788_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEX8934793.1"
                     /translation="MLPWSAHLAGRFDEHVIDSELLRDNPLGDPASRPLWIYLPPGYD
                     SSQQRYPSVYVIQGYTGQLAMWRNRSPYRQPFPETVDALFATGDVPPAMVVFVDAWTA
                     YGGSQFVDSPGTGRYHSYLCEEVVPFVDTHYRTLPDRAHRAISGKSSGGFGAMITPML
                     RPDLFGALASHAGDALYELCYLAEFGKSVRHLRDYDGDIRAWWSDFQSRTAFTKPADE
                     HLLMMLGISACFSAREDGTPELPFDPHTGVLRDEVWQRWLDWDPVRMAPRYADALRSL
                     RAVWLDAGTRDEWYLDLGAQAFREALRTAGLPDERVHFELFDAGHGRIEYRYPLALAW
                     LCRQLT"
     gene            complement(3989..5185)
                     /locus_tag="VF788_11510"
     CDS             complement(3989..5185)
                     /locus_tag="VF788_11510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8934794.1"
                     /translation="MTAEHTAQSAKAPSAEDGGATLLPWLREMRERQPVWRDAYGFWH
                     VFRYADVHRAISEPEVFSSDVGRVLPVGQKLSEGNLPRTDPPRHHQLRRLVGAAFSPK
                     VVAGLAPRIAEITGELLDATGGSGEFDLVPTLAYPLPVTVIAELLGLPAADRELFAVW
                     ADRLFGREVADPTDPELGKKIDEATADMLAYLLEHCRDRRAHPREDLISKLATVEADG
                     ERLTDTEVVNFSLVLLLAGHITTTALLGNTVLCLDEHPEVLAELRADRSLVPAAIEEV
                     LRYRSSFTQVGRVTMTEIELSGQVIPADAIVTPWLLSANRDEREFPDPDRFDIHRAAN
                     HHVAFGHGIHFCIGQLLARVEARVAVGVLLDRYAEISLTPGVPLRFYSQGIFAARNVP
                     VTVRLA"
     gene            complement(5188..5904)
                     /locus_tag="VF788_11515"
     CDS             complement(5188..5904)
                     /locus_tag="VF788_11515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934795.1"
                     /translation="MHERTEQDSREQRILDAAGELLLRFGYRRITVEDVAARSGVGKG
                     TVYLHWKAKHELFASLLLREVGDVMQELVERMRADPAEVLLHRMMRASFVAIMRRPLV
                     RALYTRDIDTLGKLAGSKLLHDRQRASDDLFAEYVDLLRKHYLLRTDSDRTTQVYALQ
                     AAGTGFYFMEQFLPPDSQLPLDRKAAALAEIIRRSFEPPEEPDIETLRAIAPRAVELF
                     DLMRTGRPPEASGPTDSARE"
     gene            6270..6698
                     /locus_tag="VF788_11520"
     CDS             6270..6698
                     /locus_tag="VF788_11520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934796.1"
                     /translation="MCALVTGFGAGGTAAPVNTSALATSAAATQALTELAPVTLAPQT
                     LPGPASLPPPPPSCTASPRDATPSQSSDETITVHTTRGAVVYLVVHYPTATRPFTLVA
                     DSAGTAVITFPINRSVPGSPVKVDVSTNSGQVCGTQFTPQ"
     gene            7000..7938
                     /locus_tag="VF788_11525"
     CDS             7000..7938
                     /locus_tag="VF788_11525"
                     /inference="COORDINATES: protein motif:HMM:NF024685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIR2 family protein"
                     /protein_id="HEX8934797.1"
                     /translation="MADDLGDMYEMVARRLLSGKVVPVLGAGANLGDRPPGVSFEPGG
                     RYLPNGRELAEVLARSANYPNADIFDLARVSQYVAAMLGEDELYEELHKIFNADYPPT
                     SLHRFLARLARHTREASTNGCMLLVTTNYDDALERAFQDEGEPYDLVTYINDVEKDRG
                     YFRHTPFRGEPVVIRIPNEYTGLPLDQRTIIAKIHGAVDRVNRGDSFVITEDHYVDYI
                     TRADIERLFPVTLADKIKRSHFLFLGYSLRDWNVRVMLYRLRRKGTRRKSWAIEADPD
                     PVDRVTWDERGVDILHDRVEDFVAAIEQRLPPPEAA"
     gene            7935..11681
                     /locus_tag="VF788_11530"
     CDS             7935..11681
                     /locus_tag="VF788_11530"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX8934798.1"
                     /translation="MTGATQPPSVSQPELDRVVPECPYVGLVPFGESDAPYFFGRQRD
                     CDVVVANLTTSRLTLLYAGSGVGKSSVLRAGVLPRLQEIARESYEDLDVPDAAVAYVR
                     EWSPDPLVTIAAAVLGTVERVPGANPVELPGPPRLSVPWLREVIQRSGVAGIYLILDQ
                     FEEYFRYHPDDLGEDGLAGELGRILTIRDLQVNVLLSIREDALATLDRFKGRVPRLYD
                     NYLRLAHLGRDAAREAIEGPLNHYNQVVPSGSAMMVQPELIDALLYQTRAGKLVMELE
                     GPVSGGVPDGRDGIETPYLQLVLTKLWEAERASGSSVLRRSTLSELGDAQKIVQTHLR
                     TVMDGLSAEQRRTAAKVFRFLVTETGSKNAQTAETLAEWSNEPIDSVQELLRSLSAGR
                     QSILRPVQQPSGAGEPPLYEIFHDVMGPAVLDWRRCYVAQQQQEEEARRLSTEREEAS
                     RRLLAEREEAERRISTEREEARKAAKTARRQLRLAWLAAALVAILLVFSGFFTMWKIH
                     TANKQERLTQAAATLGYNPVESLKHAAEAYQVPLSWLRNFDSDKNARSAVLTAASSPR
                     SSVIAGPKPMMIGMKNTPDNRYVVAYDAHGGVAVIGDDGTVKRQAKASGLRGTVTLDP
                     QAVAVSPDASHVVLGTDQGTVAVINTTTGARTDIETAGDSPRTVWWIGSAANGLVFVV
                     SGSRVAATYSPDTGKQVTRFPAAEVYDAVPLADQQHIVTSEKDDKSEQATKLRVWDVH
                     TGTKIAESSTLNPAAILLMRYAQSVVSLSVVGLSEGAEPSIVVWDWQARRDPIRYPVT
                     AHNKLQKIVVDEQAQTVMIAQDKEVRSYSLATGLPQGSLPPQADFVTDVAASPDRQWI
                     TTASADGRVLVWFQGQGHQQSPTAPTYELLGHSGDVTQVSYLRNGDVVLSLGADGTVR
                     RWKLPEVPRFEEHVDGVTDMDLTHDGSRLATASEDGRVFVIDPHNVLRSPMATVKTDT
                     PLRRVLFDPIDPHRVVTLGRLGGAPKLWRWGGDGNSERADLRYDLPSLPTNGYLVSLA
                     ISSDGKTVAAGDNGGTIHLWDAMTGKLRLGAEFRGAGPAYGIAFDPTGELLAATDTDG
                     IHFWKLGTTEPPPSLSHPHATSVVFAPSGEHLASTAGDGTVKIWSRDGTLVRDGLVAH
                     GHPSSNPILFEPQGGNGELLAVGTAGGLVEVWDVRSGVTVMLDRHHSVSVNNVVFLPG
                     DGSHLVSASGDTTVAQFSCRACADPDGVIREAEEWVKTNSTTPH"
     gene            11711..11866
                     /locus_tag="VF788_11535"
     CDS             11711..11866
                     /locus_tag="VF788_11535"
                     /inference="COORDINATES: protein motif:HMM:NF033521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso RiPP family leader peptide-containing
                     protein"
                     /protein_id="HEX8934799.1"
                     /translation="MDIFTERDNEVRAEDPEVYEPPMLDEIGGFTALTRADSTGHVVE
                     KTAYYSE"
     gene            11873..13726
                     /locus_tag="VF788_11540"
     CDS             11873..13726
                     /locus_tag="VF788_11540"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEX8934800.1"
                     /translation="MRSSLRQPDPGQTWFVAFPDCDAAHGAPAALGRYAPQMLPHASG
                     QPWLLGCWGAKELVTAQARHVRVAVIGCCPVTAAALSASAHQVRTAADLDQLAAGLSG
                     SFHLMAAIDGHIRVQGSVSGLRRVFYTQLGEVTVAADRADVLAGLTGAAVDEQWLAAR
                     LVYPYLPHPVADGCPWQGMQVLADDSYLLSGPDQPTRTVQWWRPPEPVTPLAQAAPTV
                     GQALVTAVDARTRASGTISCDLSGGLDSTPICFLAARGNSQVIAVTLVSTETGHDDAR
                     WAQHAAGQLGGVEHLVLDMGQLPLMYANVGNSGAGADEPHITIRDHARTTEVAHQLVK
                     RGSRLHLGGMGGDQVLQAPAAYLHTTARTHPRIAASHLRGRRAVSGWPLGATLHGLAD
                     RSSYEQWLTTTVDDLTAPPPARGMPSLSWGPALRLPPWATPQTVDAARTLLHQAAANA
                     APLAPTRGQHAALEQLRCVGYFTRHIAGIMARAGLPLASPFLDDRVVEACLAVRLHER
                     STPWRFKPLIVEAMRELVPATVLHRSTKGDFSTDWHTGLRSARAHLAGLLDDLILVRL
                     GLVDVDALRKACLGLYPHTLPMLALDRTLACEAWLRALTPASSATAIGASS"
     gene            13723..13998
                     /locus_tag="VF788_11545"
     CDS             13723..13998
                     /locus_tag="VF788_11545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020670106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis PqqD family
                     chaperone"
                     /protein_id="HEX8934801.1"
                     /translation="MTVRLRADVSTTDTGDGVVLLDERAGRYWQLNPTGGLVLRLLLD
                     GAAPRRVAQTLVDRHSVSIQQAAADVDDLLRRLHTAGLVTDHVRGRQ"
     gene            13995..14432
                     /locus_tag="VF788_11550"
     CDS             13995..14432
                     /locus_tag="VF788_11550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020670107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HEX8934802.1"
                     /translation="MSQPMALQRRRRLPHRQRPAALVAVGAARIVAQLPPRRIRAVLT
                     LLRHRAAPATYQQAEEALDAVLAVSVLYGGRYCLQRSLATTLLCRIRGVWPTWCTGVR
                     TAPFIAHAWVEAEGQPVGEPHGPGYYRPLIVIPPARLTRQAGS"
     gene            complement(14429..15850)
                     /locus_tag="VF788_11555"
     CDS             complement(14429..15850)
                     /locus_tag="VF788_11555"
                     /inference="COORDINATES: protein motif:HMM:NF014503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934803.1"
                     /translation="MTKVAIPDAVVLLPGITGSVLAKDGKEVWAPTPGAALRGLLSLG
                     GSLKKNLEVKDDDWKAADLGDGVTAPRLVDAAHIIPGLWKIDVYSEIEGFLLATFDLT
                     RGVNYFPFPYDWRRDNRASALRLQEMSHKWLAAWRARSGNPTAQLVLVGHSMGGLVAR
                     YFVEALGGWRDTKAVVTFGTPFYGSLNAIDFLINGFHKNLGPFSVDLSPQLRSMTSVQ
                     QLVPSYRCVYGPDGTARTPANAGLAQWKPAWNDALQTFQQEMDSAALVNRADPQFAAN
                     PVVYQPITGRDQPTRQSAAVVGDAIELRFDREGKDDSGDGTVPLLSAALAGTQQMRTF
                     APEQHSRLQTNLPLLHHLSGVIQALHAPRVEDLRRAVNWWFAIDVDDVYLPGEPVSVH
                     IQALSDLDRETSPEVKATVSVQNKATGEVTARRDVVVQRERTEVVLGEPAPGTYLLTV
                     NGPGDSAAVSDVLAVASLDELEG"
     gene            complement(15863..>16903)
                     /locus_tag="VF788_11560"
     CDS             complement(15863..>16903)
                     /locus_tag="VF788_11560"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEX8934804.1"
                     /translation="LMKELVRRLTPPSDDDLAELPAFLTRFMVPLDLRCYLDGQAPLI
                     IEVDPNTAVVPWELLISTTQTVEQVPGDPPEPLAIQQCLSRQMRTSYARTDSEESSVE
                     HMRALVIGDPGDPNSGKSLPEARQEAIDVADVLRAHKIDVDLFVGVPGSDPAPDARFA
                     TQLDVLAKMHNRDYHIIHYAGHGVFNPINPELSGWLFADGLLTARELIQFSQAPRLVM
                     ADACWSAARPDAPAEEAPRPGHRGELAPVLADEFLRAGTGHVIGASWSLPDKEARRFA
                     TSFYTALLGSGGEDPLSVGQAMRRSRKILWDETRKVTSASPERRCAWAAYQHYGDPGD
                     HLLPGTAASRRR"
BASE COUNT         2964 a         5598 c         5447 g         2894 t
ORIGIN      
        1 gaacacgtcg atgatgccgc cacaggtgat accgacggtg aaggcatcgt catcggagac
       61 gccatagcgc tgtaggaccg gggtgtcatc ggcgagcacc tgctggccga gctcgaacac
      121 tgcaccctcg acgcagccac cggagacact gccgaccgcc cgctcatccg aggtaaccag
      181 catcgaggct ccggccgggc gtggtgcgga gcggtaggtg gacaccaccg tgcctaacgc
      241 ggtggatttc ccctggcgcc actctgtcac cagttcgtcg agcacctctc gcaccgcaga
      301 cctcctcgcg cagagcttcc ggttacggcc atgtcgcact cctattagag agtattcggc
      361 ctaaccggca taagggttca cccacaatga ctcacctgga tgacgctgct gattcagcag
      421 ctattcctca gtgctgtcca gaggcactcg gcgggcacgg acgagggcgg tccacgtcga
      481 tcccgctcgc caggtcggag cagtccacca cggtcaggtc agaccgttgc gcgagccagt
      541 ctcgggcccc ccgatcaccc tgcgccgagt cgacaatggc tgcccagtgc tggcgcccga
      601 gcagcaccgg atggcccggc tggctctcga aaccggccct ggccaccacc gtcgggttcg
      661 ccagcgcaac cagcctgcgg accacggagg cgtccacatc cggcagatcg accaggtgca
      721 ccagcgcggc ctgcaccggt ggaggtgcgc tgcggatgag ctcggccagg cccgctcgca
      781 gtgaagcgcc catgccctcc gcccagtcca cggccagcac ggtggctgcg gtatccggca
      841 ccagcgggat cacctcggca gcctgggcac cgactacgac aagcaccggg tcgcatccac
      901 cgtcactcag cgccgtcacc gcccggcgca gccacgctcc cccgtcgacc agggccttgg
      961 gcatgccgta gcgccgtccg gccccggccg ccagcagcaa tccggcgatc atgatcacat
     1021 cctgccacgg atcgtgcgcg gctaacgcgg cggacaggtc gggcgggacc tggatgctgg
     1081 cgagccacgc ccgccacgcg gcggcgtcgg caacggtgag ttcggcggtt cctcggtcac
     1141 cgctcttccc tagcgcagcg gctcggcggt ctcgacctgc tcgaggacat cgacctcgtc
     1201 accgacgcgc agggtcacgc ccggcgagtc gggaatgaga ttgatcgcga accaggtttt
     1261 gccgtcccat cgccggtgcc gggcgagtgt catgagcggc tctctgcctt ttgtcgcggt
     1321 gctcggatcg atcgtggtga gcacacaacg atcgcaggat ttgacggccc ggaatcgcgc
     1381 ggcaccgacg cggagcaccc gccagccgtc ctcagcccag gctgctgcgc ccgcaacgac
     1441 caggttggga cgaaaccgcg tcatcgacat cggcccctcc gccgagcgcg gtccctcggc
     1501 gatgagatcg ttgagcgcca ccagggattg ctcggtggcc agcaggagcg ggtagccatc
     1561 ggcgaacgac actcgatcgc ccgcacggct gtactgggga ttgggccggc gccgggtggg
     1621 gtcgtccagg tagaccagcc ggaccggttc accgaccact ttgctgaacc aggcgttcgc
     1681 ctgctccgcc gcgagggaag cggcgaccac gctggcgaag acctgcacgt cgcagagttc
     1741 cgcaccttcc ggtgtgtcaa ccagcagagt gtcgacctcc ggcgcctgca ccagcagccc
     1801 agccgggttg ggctgcgggg tgaccagtac cagctgcggg tgcttccgcg cggtcatcac
     1861 ccggccctgc tcgtcgacga gcatccaccg ccgatcacca accagacccc acggctcaac
     1921 cactgcttcg cggaccgcct ggccgcgaca cgacttgatc ggatatcggt tgattccggt
     1981 cagcgtgagc accataaacg caggctcccc gtcctcctga ttgagggcaa gtgccagctc
     2041 accggcggat tgatatgcac gccggtgacg atctgccgct ggcctcaccg agtagttgct
     2101 ggtaccaccg gttggcccgc tgcacgtcgg caactgcaat catcggctgt ggacgtaccg
     2161 cgggtcggcg cttcgttcgg acatgatcgc accctagttg tggcacccag ccggtcttga
     2221 acaaagggga ggaaggatcc ggtcatgatc gaggagctcg acccgcacat cacgccgcag
     2281 ctggatcact ccgcactgct ggtgatcgat acccaggtgg acttcgtcga cggcggcgcg
     2341 ttccctgtcc ccggtaccac ccaggtggtt cccgcgatca cccggctgat ccagacgtac
     2401 cggacggctc agctgccgat cgtgcacgtc atccggcttt acgacggcgc cgatgtcgac
     2461 ctggcccgcc gcacgctgat cgccagcggc gcaccaatcg cccggcccgg caccgcgggc
     2521 tcccagatcg tccccgagtt acgacccgac cccgccgtca cgctcgaccc cgatgttctc
     2581 ctgggcggtg agtgccaggc gctggccggg caggagtggg cgatgtggaa gccccgctgg
     2641 ggcgcgtttc accgcacgcc gctcgaccac cacctacgca ccctcgaggt gagcaccgtg
     2701 gtcatcgccg ggtgcaacta cccgaactgc ccccgcgccg ccgtctatgg cgccagcgag
     2761 cgcgactacc gggttctggt cgtgtccgac gccatctccg gcatcgagcc gcatcatctc
     2821 gaggaagcca gccggatggg gatcgtctgt gcgcccacca gcgacgtcac cacatacatc
     2881 aagcgaggcc accgcctgcg ccaatgaccc gaccacggtg ggaatgggga aggttaggtg
     2941 agctggcggc agagccaggc gagggcgagc gggtagcggt attcgatcct gccgtggccc
     3001 gcgtcgaaca gctcgaaatg cacccgctcg tcgggcagcc cggctgtgcg cagcgcctcc
     3061 cggaaggcct gcgcgccgag atcgagatac cactcgtccc gggtgccggc gtccagccag
     3121 accgcccgca gtgagcgaag cgcgtctgcg taccgcggcg ccatccgcac cgggtcccag
     3181 tccagccagc gctgccagac ctcgtcccgc aacactccgg tgtgcgggtc gaacggcagc
     3241 tccggggtgc cgtcctcgcg cgcggaaaag cacgcggaga tgccgagcat catgagcagg
     3301 tgctcgtcgg ccggcttggt gaacgcggtc cgggactgga aatccgacca ccaggcacgg
     3361 atgtcgccgt catagtcacg caggtgacgc accgacttgc cgaactcggc gaggtagcac
     3421 agctcgtaga gggcgtcgcc ggcgtggctc gcgagcgcgc cgaacaggtc cggccgcagc
     3481 atcggcgtga tcatggcgcc aaacccgccg gaagacttgc cgctgatcgc ccggtgcgcg
     3541 cggtcgggca gcgtgcggta gtgcgtatcg acgaacggca cgacctcctc acacaggtag
     3601 ctgtggtagc gcccggtgcc cggggagtcg acgaactgac tgccgccgta ggccgtccag
     3661 gcatcgacga aaaccaccat cgcgggtggg acgtcgccag tagcgaatag cgcgtcaacg
     3721 gtttctggga agggctgccg gtacgggctg cgattgcgcc acattgccag ctgcccggta
     3781 tagccctgga tcacgtacac gctcggataa cgctgctgcg agctgtcata ccccggaggt
     3841 agatagatcc acagcgggcg gctcgccgga tcacccaagg ggttgtcacg gagcagctcg
     3901 ctgtcgatga cgtgctcgtc gaaccgaccg gcaaggtgcg ctgaccaggg caacatgcgc
     3961 tcaccgtacg tgtccggcca gactgtcact atgcgagtcg aacggtgacg ggaacgttcc
     4021 gggcggcgaa gatcccttgg ctgtagaatc tcagcggtac accgggagtc aatgagatct
     4081 cggcgtagcg atcgagcaac acgcctaccg cgaccctggc ctccacccgg gccagcaact
     4141 ggcctatgca gaagtggatg ccgtgcccga aggccacgtg atggttggcg gcgcggtgga
     4201 tgtcgaaccg gtcggggtcg gggaactcgc gctcgtcccg gttggcggac agcagccacg
     4261 gcgtgacaat cgcatccgcc gggatgacct ggccactgag ttcgatctcg gtcatggtca
     4321 cccggcccac ctgggtgaag gaggagcggt agcgcaggac ctcctcgatg gcagccggga
     4381 cgagcgacct gtcggcgcgc agttcggcca gcacttcggg atgctcatcg aggcacagga
     4441 cggtgttgcc cagcagcgcg gtcgtggtga tgtgcccagc aagcagcaac acgagagaga
     4501 agttgacgac ctccgtgtcg gtgagccgct caccgtcggc ctccacagtt gccagcttgc
     4561 tgatcaagtc ctccctggga tgggccctcc ggtcccggca atgctcgagc aggtaggcga
     4621 gcatgtctgc ggtggcctca tcaattttct tgccgagctc cggatcggtc ggatcagcga
     4681 cttcccggcc gaacagccgg tccgcccaga cggcaaacag ctcccggtct gcggccggca
     4741 ggccgagcag ctccgcgatc acggttaccg gcagggggta ggccagagtg gggaccaggt
     4801 cgaactcgcc tgagccaccg gtggcgtcga gcaactcacc ggtgatctcc gcgatacggg
     4861 gggcgagtcc ggcgacgacc ttcgggctga acgccgcacc gaccagccgg cgcagctggt
     4921 ggtggcgtgg cgggtcagtg cgcggcaggt tgccttcgct gagcttctgc ccgacgggca
     4981 acacccggcc gacatccgag gagaacacct cgggctcaga gatcgctcga tggacgtcgg
     5041 catagcggaa cacgtgccag aagccgtaag catcccgcca cactggttgg cgctcacgca
     5101 tctcgcgcag ccaggggagg agggtggctc caccgtcttc ggcgctcggt gctttggcgg
     5161 attgggcagt gtgctcagcg gtcatggtta ctcccgggca gaatcggtgg gaccggacgc
     5221 ctcgggtggg cgtcccgtgc gcatcaggtc gaagagctcg acggctctgg gagcgatggc
     5281 gcgcagtgtc tcgatgtcgg gctcctccgg gggttcgaag gaccgtcgga tgatctcggc
     5341 gagtgccgct gctttgcgat cgagaggtag ctgcgagtct ggcggtagga actgctccat
     5401 gaagtagaag ccggtgccag ccgcctgcag ggcgtagacc tgggtggtcc tgtcgctgtc
     5461 ggtgcgcaac aggtagtgct tccgcagcag gtcgacgtac tcggcgaaca ggtcgtccga
     5521 ggctcgttgc cggtcgtgga gcagtttgct accggcgagc ttgcccagcg tgtcgatgtc
     5581 acgggtgtaa agcgctctga ccagtggccg tcgcatgatc gccacgaagc tcgcccgcat
     5641 catccggtgc agcaagacct cagctgggtc agcccgcatg cgctcgacca actcctgcat
     5701 cacgtcaccg acttcgcgca acaacaggga ggcgaatagc tcgtgcttgg ccttccagtg
     5761 caggtacacc gtgcccttgc cgacgccgga ccgggcggcg acgtcctcga cggtgatccg
     5821 ccggtacccg aagcgcagca gcaactcgcc agcagcatcc aggatccgct gctcgcggct
     5881 gtcctgttca gtacgttcat gcaccggcac ctcacgaggt cagctcgagc gtgactgatg
     5941 accaatttac tctttcggtc atgcgaaact caagctgggg gcatcctgtg tacgtcctcc
     6001 tccggcgtaa atcccaccgc ggagcagtgt ccggactgca ttaccaccta tgccggaggg
     6061 ctgcggccac ttcgccgcaa aagccgccac cgctatgtgc gcaggactcc gatgacctta
     6121 tcgattgatt ccacgattgg atgacgtgag ataggaggaa tcagttggtc gaccaacgct
     6181 gccagtcggt acagccggta aggtacggct cgtactagat tggggtgact gtgatccctg
     6241 agagttcgac cgtcttggtg attgctggtg tgtgtgcact cgtcaccggg ttcggcgccg
     6301 gcggtaccgc ggcacccgtt aacacctcag cgctggccac ctcggctgct gctacgcaag
     6361 cgctcaccga gctggctccg gtaacgctgg caccccagac actgccggga ccggcctcgc
     6421 tgcctcctcc accacccagt tgcacagcat cgccgcgcga cgccacgccc agtcagagca
     6481 gcgacgagac gatcaccgtg cacacgaccc gcggagcggt cgtctatctc gtggttcatt
     6541 acccgaccgc aacacgccca ttcaccctcg ttgctgacag cgccggcaca gcggtcatca
     6601 ctttcccgat caatcgatcg gtacccggtt ctcctgtcaa ggtagatgtg tcgaccaact
     6661 cagggcaggt ctgcggcacc cagttcacac cgcagtagca cacaatcgtg cgctgaactg
     6721 cagatgcaaa gtcagcaccg ttacgctggg gcctcctcgc cacactgatc acagcagcag
     6781 cgatccgcag gtcggccccg tagccgtgat cgtcggttat caacagaacc agccccactt
     6841 cgagtgatcc agctggactc tggcagccac aacttttact aatggaaacg cgttctcagc
     6901 ctccgtaacc cgcatgggtg aagctggtat ttcgtcgacg gttttgcgca tctttacatc
     6961 tggtggcatg tgtacctccg gtcgacagga gctcggacca tggctgacga tttgggtgat
     7021 atgtacgaaa tggtcgcgag gcgtctgctg agtgggaagg tggtgcctgt cctcggtgct
     7081 ggcgccaacc tgggcgatcg accgccgggt gtcagtttcg agccgggcgg ccgctacctt
     7141 cccaatggca gggagctggc ggaggtgctc gcgagaagcg ctaattaccc gaacgcagac
     7201 atctttgacc tggcgcgagt gtcgcagtac gtggcggcga tgctgggcga agatgagctc
     7261 tacgaggagc tccacaagat cttcaacgcc gactacccgc cgacctctct acaccgtttt
     7321 ctcgcccggt tggcacgcca tacacgggaa gcaagtacaa acggatgcat gctcctcgtg
     7381 acgactaatt atgacgacgc gctcgagcgg gcgttccagg atgaaggtga gccatacgac
     7441 ctcgtcacct acatcaatga cgttgaaaag gatcgtggct acttcagaca caccccattc
     7501 aggggtgagc ccgtggtgat tcggataccg aatgagtaca ccggcctccc actcgatcag
     7561 cgaacgatca tcgcgaagat tcacggggcg gtggaccggg tcaaccgcgg ggacagcttc
     7621 gtgattaccg aggaccacta cgtcgactac ataacacgcg cggatattga acgcttgttt
     7681 cctgtcacgc tcgcggacaa gatcaagagg agccacttcc tgtttctcgg ctacagcttg
     7741 cgcgactgga atgtccgggt catgttgtac cggctacgga ggaagggcac ccggcgtaag
     7801 tcgtgggcga tcgaggctga tccagacccg gttgaccgcg tcacgtggga tgaacggggt
     7861 gtggacatcc tgcacgaccg ggtagaggat ttcgtcgccg cgatcgagca gcgacttcca
     7921 cctccggagg ctgcatgacc ggcgccacgc agcctccctc ggtctcgcag cccgagctgg
     7981 accgagtcgt acccgagtgc ccgtatgtcg ggctcgtgcc cttcggtgaa tcggacgcac
     8041 cgtacttctt cggtcgccag cgcgattgtg acgttgtcgt cgcgaacctc accacgtccc
     8101 ggctgacgct gctctacgcg gggagtgggg tcggcaagag ctcagtcctg cgggcgggtg
     8161 tgctgccgcg gctccaggag atcgccaggg aatcctatga ggacctcgat gtcccggacg
     8221 ccgctgtcgc ctatgtcagg gagtggagcc ccgatccgct cgtcactatt gccgcggcgg
     8281 tgctcggcac ggtggaacgg gtgccgggcg cgaacccggt cgagctgccc ggtccgccac
     8341 ggctcagcgt gccgtggctg cgtgaggtca tccagcgctc cggggtcgca gggatctacc
     8401 tgatccttga ccagttcgaa gaatacttcc gctaccaccc agacgatctc ggggaggacg
     8461 ggttggccgg cgagctgggc cgcatcctga ccatccgcga tctgcaggtc aacgtcttgc
     8521 tgtcgatccg agaggacgca ctcgccacac ttgatcggtt caaggggcgt gtcccccgcc
     8581 tgtatgacaa ctacctgcgg ctggcacatc tgggacgcga cgccgcccgg gaggccatcg
     8641 agggcccgct gaatcactac aaccaggtgg tgccgtccgg ctccgcgatg atggtccaac
     8701 ccgaactcat cgatgctctg ctctaccaga ctcgcgcggg aaaactggtc atggagctcg
     8761 aaggaccggt ttccggcggt gtcccggacg gccgggacgg catcgagact ccctacctgc
     8821 aactcgtgtt gaccaagttg tgggaagcgg aacgggccag cggctcctcg gtactacgcc
     8881 gcagcacgct cagcgagcta ggtgatgccc agaagatcgt gcagacccac ctccgcaccg
     8941 tgatggacgg cctctctgcc gagcagcgaa ggaccgccgc gaaggttttc aggttcctcg
     9001 ttaccgagac gggctcaaag aacgcgcaga cggctgagac cctcgccgag tggtcgaatg
     9061 agccgattga ctccgttcaa gaacttctgc ggtcattgtc cgcaggacgg cagagcattc
     9121 tgcgacccgt ccagcaaccg tcgggagcag gcgagccgcc cctctacgaa atcttccatg
     9181 acgtgatggg tcccgcagtg cttgactggc gccgctgtta tgtggcgcaa cagcaacagg
     9241 aggaggaggc acgccgtctt agcaccgagc gggaggaggc gtcccgccgt ctccttgccg
     9301 agcgggaaga ggcagaacgc cgcattagta ccgaacggga ggaagcccga aaggcggcga
     9361 aaactgcccg ccgtcagcta cgcctggcat ggctcgcggc ggccttagta gccatactgc
     9421 tcgttttttc tggttttttc actatgtgga aaattcatac tgcgaataag caggaacgcc
     9481 tgacccaggc ggccgccacc ctcggctata atcccgttga gagtctgaag catgcggccg
     9541 aggcctacca ggtgccctta tcgtggcttc gcaacttcga ctccgataag aatgcccgct
     9601 cggcggtgtt gactgcggcg tcgagcccgc gcagcagcgt gatcgctggg ccgaagccga
     9661 tgatgatcgg catgaagaac acaccggata accggtacgt cgtcgcctac gatgcgcacg
     9721 ggggtgttgc cgtcatcggt gatgacggca cggtgaaacg ccaggcaaag gcgtctggtc
     9781 tgcgcggcac cgtcaccctt gatccgcagg cggtggccgt cagccctgac gcgtcccacg
     9841 tcgtgctggg gaccgaccag ggcacggtgg cggtcattaa caccacaacc ggagcgcgga
     9901 ctgatatcga gacggcggga gactcacctc gcaccgtgtg gtggatcggg tccgccgcga
     9961 acggcctcgt cttcgtcgtc tccgggtcca gggtcgccgc aacgtacagt cccgacaccg
    10021 gaaagcaggt cacccgattc ccggcagccg aagtttacga cgccgtgccg ctagccgatc
    10081 agcaacacat cgtgacttcc gagaaagacg ataaatcgga gcaggcaacg aagcttcggg
    10141 tatgggacgt gcacaccggc acgaagatcg cggaatcgtc cacgctgaat cctgccgcaa
    10201 tcctgctcat gcgctacgcg cagtccgttg tcagcttgtc cgttgtcggc ctgtcagaag
    10261 gcgcagagcc ctcgatcgtc gtgtgggact ggcaggcgag acgggatccc attcggtacc
    10321 cggtcaccgc tcacaacaag cttcagaaga tcgtcgtcga tgagcaggct cagaccgtca
    10381 tgatcgcgca ggacaaggag gtacgaagct acagcctcgc caccggatta ccgcaaggat
    10441 cgctgccccc acaggcggac ttcgtcacgg atgtggccgc tagccccgat cgccagtgga
    10501 ttaccaccgc tagcgccgac gggcgtgtcc ttgtctggtt ccaagggcag gggcatcagc
    10561 agtcacccac cgcccccacc tacgaactcc tcggtcactc tggagacgtc actcaggtca
    10621 gctacctgcg taacggcgat gtagtgctgt ctctcggcgc tgacggcacg gttcggcgct
    10681 ggaaactacc cgaggtgccg cgcttcgaag agcacgtcga cggggttacc gacatggacc
    10741 tgactcatga cggatcccgg cttgcgacgg caagcgagga tggtcgcgtc ttcgtcatcg
    10801 accctcacaa cgtgttgaga tcgccgatgg ccacggtgaa aaccgacact ccactgcggc
    10861 gagtgctgtt cgatccgatc gatccgcatc gtgtcgtcac cctcgggagg ctcggtggag
    10921 ctccgaagct gtggcgctgg ggcggcgacg gaaactccga gcgtgccgat ctgcgctatg
    10981 acctaccttc gttgccgacc aacgggtacc tggtcagcct cgccatcagc tccgacggca
    11041 agacagtcgc ggcgggagac aacggcggca ccatccacct gtgggatgcc atgaccggaa
    11101 aactccgcct gggcgccgag ttccgcggtg cgggaccggc ctatggcatt gccttcgatc
    11161 ctaccggcga gttgctggcc gcaactgata ccgacgggat tcacttctgg aagctgggca
    11221 ccaccgagcc acccccatcg ctttcccatc cccacgcgac cagcgtggtt ttcgcccctt
    11281 ccggcgaaca ccttgccagc acagctggag atggcacggt gaagatctgg agccgtgatg
    11341 gcacgctcgt ccgcgacgga ttggtcgctc acggtcaccc gtccagcaac ccgatattgt
    11401 ttgagcccca gggtggcaac ggtgagctgc tcgccgtggg gacggctgga gggctggtcg
    11461 aggtctggga tgtgcgctcc ggcgtgacgg tcatgctcga ccgtcaccac agcgtctcgg
    11521 tcaataacgt cgtatttctg cccggtgacg gctcccacct ggtctccgca agtggcgaca
    11581 cgaccgttgc gcagttcagc tgccgcgcat gcgccgatcc tgacggtgtg atccgggaag
    11641 cagaagaatg ggtgaagact aactctacga ctcctcattg aaatgtgagt tcgaagattg
    11701 aaggtgcaac atggacattt tcacagaacg cgacaacgag gttcgggcgg aagatccaga
    11761 ggtgtacgag cccccgatgc tcgacgaaat cggtgggttc accgcgctga cccgcgccga
    11821 tagcacggga catgttgtgg aaaagaccgc gtattactca gagtaatatc tcgtgcgctc
    11881 cagtcttcgt caacctgacc ccggccagac ctggttcgtt gctttccctg actgcgatgc
    11941 cgcgcacggc gccccggcgg ccctgggtcg gtacgcgcca cagatgctgc cgcacgcctc
    12001 aggacagccg tggttgctgg gctgctgggg cgccaaagag ctggtgacgg cccaagcgcg
    12061 tcacgtccgg gtggcggtga tcgggtgctg cccggtcacc gccgcggcgc tatcggcttc
    12121 ggctcaccaa gtgcgtacgg cggctgacct ggaccagttg gcggccgggc tgtccggcag
    12181 ttttcacctg atggccgcca tcgacggtca catccgcgtg caaggcagcg tctccgggct
    12241 gcgaagggtt ttctacaccc agctggggga ggtgacggtg gctgccgacc gggcggatgt
    12301 ccttgccggt ctcaccggtg ccgcagtcga cgagcaatgg ctggccgccc gcctcgtcta
    12361 cccctacctg ccccacccgg tggccgatgg gtgcccgtgg cagggcatgc aggtcctcgc
    12421 cgatgacagt tacctgctca gtggccctga ccagcccacc cgcacagtgc aatggtggcg
    12481 cccaccggag ccggttacgc cgctggcgca ggctgcgccc accgtggggc aggcgctggt
    12541 taccgcggtt gacgcacgaa cccgggcgag cgggacgatc agctgcgacc tgtcaggtgg
    12601 cctggactcc accccgatct gctttctggc cgcccgcgga aacagccaag ttatcgcggt
    12661 gactttggtc tcgaccgaga ctggccatga cgacgcgcgg tgggcgcagc acgccgctgg
    12721 ccagctcggc ggcgtcgagc acctcgtgct cgacatggga cagctgcccc tgatgtatgc
    12781 gaatgtcggc aacagcggtg ccggagccga cgagccgcac atcaccatcc gggaccatgc
    12841 tcgcaccacc gaggtcgctc atcagcttgt caagcgagga agtcggctgc acctcggtgg
    12901 gatgggcggt gaccaggtct tgcaggcacc agccgcctat ctgcacacca cagcccggac
    12961 ccatcctcgc atcgcggcca gccatctgcg gggccggcgc gcggtgagcg gttggccgct
    13021 gggcgccacg ctgcacggcc tggccgaccg cagcagctac gaacagtggc tgaccacaac
    13081 cgtcgatgac ctcaccgctc ccccaccagc ccgtggaatg cccagcctga gttggggccc
    13141 cgcactacgg ctcccgccgt gggccactcc ccagacggtc gacgcggctc gaacgctgct
    13201 tcaccaggca gcagccaatg cagcgccgtt ggcccctacc cgcggtcagc acgccgctct
    13261 ggagcagctc cgctgcgttg gctacttcac ccgtcacatc gccggaatca tggcgcgcgc
    13321 ggggctgccg ctggcttccc cgttcctgga cgaccgggtg gtcgaggcct gcctggccgt
    13381 gcggctgcac gagcgcagca ccccgtggcg gttcaagccg ctgatcgtcg aggcgatgcg
    13441 cgagctggtg ccagcgacgg tcctgcaccg cagcacgaag ggcgacttca gcaccgactg
    13501 gcacaccgga ctgcgcagcg ctcgagctca cctcgctggc ctgctcgacg acctgatcct
    13561 ggttcggctc ggcctggtcg acgtcgatgc cctacgcaaa gcctgccttg gcttgtaccc
    13621 gcacacactg ccgatgctcg cgcttgaccg gaccctggct tgcgaagcat ggctgcgcgc
    13681 tctcacccca gcatcatcag ccactgcgat cggagcgtca tcatgaccgt gcgattgcgg
    13741 gctgacgtgt caactacgga caccggtgac ggcgtggtgt tgcttgacga acgcgccggt
    13801 cgctactggc agctcaaccc caccggtggt ctcgttctcc ggctgttgct cgatggtgct
    13861 gcgccccgcc gggtggccca gaccctggta gaccggcact cggtgagcat ccagcaggcg
    13921 gctgctgacg tcgacgacct ccttcggcga ctgcacaccg ctggactggt gactgaccac
    13981 gtaaggggac ggcaatgagc cagcccatgg ccttacaacg ccgccgaagg ctgccccatc
    14041 ggcagcggcc tgctgctctg gtcgccgttg gtgccgcgcg catagttgcc cagctaccac
    14101 cacgacgtat ccgagccgtg ctcacactgc tgcgtcaccg cgccgcaccg gccacctacc
    14161 agcaggccga ggaggcattg gacgcggtct tggccgtcag cgtgctctac ggcggccgat
    14221 actgcttgca gcgctccttg gccaccacgc tgttgtgccg catccggggt gtctggccca
    14281 cctggtgcac cggcgtgcgc accgctccgt tcatcgccca cgcctgggtc gaagccgagg
    14341 gccaaccagt cggcgagccg cacggtcccg gctactaccg cccgctcatc gtcatccctc
    14401 cagcgcggct aacgcgccag gctggctcct agccctcgag ttcatccaga gacgcgaccg
    14461 ctaagacgtc agagaccgcc gcggagtcac ccggcccgtt gacggtgagc aggtaggtac
    14521 cgggagcggg ttccccgagc acgacttcag tgcgctcccg ttgcaccacc acgtcacggc
    14581 gggcggtcac ctcgccagtc gccttgttct gcaccgagac cgtggccttg acttcgggcg
    14641 acgtctctcg atcaaggtcg ctgagcgcct ggatgtgcac cgacaccggt tcacctggca
    14701 ggtagacgtc gtcgacgtcg atcgcgaacc accagttcac cgcgcggcgg aggtcctcga
    14761 cacggggcgc gtgcagggct tggatgacgc cgctgaggtg atgcagcaac ggtaggtttg
    14821 tctgcagtcg cgagtgttgc tcgggtgcga aggttcgcat ctgttgcgta ccggccaagg
    14881 ccgcggacag caacggcacg gtgccgtcac cgctgtcgtc cttgccttcc cggtcgaagc
    14941 ggagctcgat cgcgtcgccg accaccgcag ccgattggcg ggtgggctga tcgcggccgg
    15001 tgatcggctg gtagacgacg ggattagcgg cgaactgcgg gtcggcgcgg ttgaccagcg
    15061 cagcactgtc catctcctgc tgaaacgtct gcagtgcgtc gttccacgcc ggcttccact
    15121 gcgccaggcc tgcattggcc ggtgtgcggg cggtgccgtc gggtccatag acgcagcggt
    15181 acgacgggac gagctgctgc acggaggtca tcgagcgcag ctgcggcgac agatcgacgc
    15241 tgaacgggcc gagattcttg tgaaagccat tgatcaggaa gtcgatcgcg ttgagtgaac
    15301 cgtagaacgg cgtgccgaag gtcaccaccg ccttggtgtc gcgccaccct ccgagtgcct
    15361 cgacgaagta gcgggccacc aagcccccca tcgagtggcc caccagcacg agctgcgcgg
    15421 tggggttgcc ggagcgtgcc cgccacgccg cgagccactt gtgggacatc tcctgtagcc
    15481 ggagcgcgct agcacggttg tcacggcgcc agtcgtaggg gaacggaaag tagttcacgc
    15541 cgcgcgtgag gtcgaatgtc gcgagcagga aaccctcgat ctcgctgtag acgtctatct
    15601 tccatagccc aggaataatg tgcgccgcgt cgacgagccg gggcgccgtg accccgtcac
    15661 cgaggtccgc ggccttccaa tcgtcgtcct tgacctcaag attttttttc aacgagccgc
    15721 cgaggctgag caggccgcgc agcgcagcgc cgggcgtcgg cgcccacacc tctttgccgt
    15781 ctttggcgag cacgctgccg gtgatgccag gtaacagcac aaccgcatcg ggtatcgcga
    15841 ctttggtcat agcttgccca cctcatcgtc tccggctggc ggcggtccct ggaagaagat
    15901 ggtctccagg atcgccgtaa tgctggtagg ccgcccacgc acagcggcgt tctggtgatg
    15961 cggacgtcac tttcctggtc tcgtcccaga ggatcttgcg gcttcggcgc attgcctggc
    16021 caaccgacag cggatcttct ccgccgctgc cgagcaatgc ggtgtaaaag gacgtcgcga
    16081 accttcgtgc ctctttatcc ggtagcgacc atgaggcgcc gatgacgtgc ccggtgccgg
    16141 ctcggaggaa ttcgtcggca agcacagggg ccagctctcc gcggtgtccc ggccgcggcg
    16201 cttcctctgc cggagcatca ggacgcgccg ctgaccagca ggcatcagcc atcaccagcc
    16261 gtggtgcctg cgagaattgg atgagttcac gtgctgtcag cagaccgtcg gcgaagagcc
    16321 aaccggacag ctccggatta atcgggttga aaacaccgtg gccggcgtaa tggatgatgt
    16381 ggtagtcccg gttgtgcatc ttggccagca cgtcgagctg ggtggcaaac cgcgcgtcag
    16441 gtgccgggtc cgatccgggg acgccgacga ataggtccac gtcgatcttg tgtgcccgca
    16501 acacgtctgc cacatcaatg gcctcttgcc gggcttcggg aagggacttg ccgctgttcg
    16561 ggtcgcccgg gtcgccgatg acgagggccc gcatgtgctc cactgacgac tcctcggagt
    16621 cggtccgggc ataggaggtc cgcatctgcc gcgacaagca ctgctggatg gccaacggct
    16681 cgggtgggtc cccggggacc tgctcaacgg tctgcgtggt ggagatgagc agctcccatg
    16741 gcacgactgc cgtgttcggg tcgacctcga tgatcagcgg tgcctgcccg tcgaggtagc
    16801 accgcagatc caacggcacc atgaaccgag tcaagaaagc gggcagctcg gccaaatcgt
    16861 catcggaggg tggggtgagc cgccgcacca gctctttcat cag
//
LOCUS       DASVXZ010000555         1936 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_419326, whole genome shotgun sequence.
ACCESSION   DASVXZ010000555 DASVXZ010000000
VERSION     DASVXZ010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419326"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(653..1213)
                     /locus_tag="VF788_11565"
     CDS             complement(653..1213)
                     /locus_tag="VF788_11565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavoprotein"
                     /protein_id="HEX8934805.1"
                     /translation="MGSRVLGLVGSGSGGLEELLPRLIRPAQNMGWTVTVTLTPTAGR
                     WLRESGTLAEIEEVSGFPVRVEPRSPTERSPHPQVDCYLVAPASANTVAKLALGIADS
                     QALTQVNEAIGIPELPVVVFPRVNAAHARHPSWDSHLEALRRAGVHLVYGDDVWPLHE
                     PRSAPGRELPWSSVLAAVNAAVPVPR"
     gene            complement(1218..>1936)
                     /locus_tag="VF788_11570"
     CDS             complement(1218..>1936)
                     /locus_tag="VF788_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX8934806.1"
                     /translation="AATTLSKIGEADLAWIAAERAMQAADDADDPLVLASAARSGTHA
                     LLAVGRFEDALELGEVAARWLWPRMEAGDPAALSLYGMLYLRTAVAAARHQDRSTAQG
                     LLAHASRAADQLGVDANYWQTGFGPSNVELHRLSAALDLGDITQVIDSAPRVHVEHLP
                     VERQVTHLIDLARALSLVAKDDDALQTLLTAEQKSPGIVRHSVVVREVVRSMYRRAPA
                     TAGKKSSPLLALAERCRAVG"
BASE COUNT          366 a          660 c          582 g          328 t
ORIGIN      
        1 cagcgaacgt gccccgaaac agcggtaaac cgctgacctc atcgacccga ggccgcaccg
       61 gacgattgcg ggaccggtcc tcttgtgact ggtactccgt caccgcctgg atctcaccca
      121 ccaagtacaa accctgcggg aacactcatc gaagtcagca gcgaaccgtg catgccgtgg
      181 tgctcccata acatggatcc tttctttcgt gtctttatgt tttcactcgt ccgctgagct
      241 accggtgtcg tctctgggcg agggggaatc cggtcgaata ggagaccact gctcagccgc
      301 cggtgatgag tatgaccggt tacgattctg cgtttcgcac cactcaccaa actcgcttgc
      361 tgccgccgct agactccgcg cgaatcgcgc cgtgtctgac aatccaccga tgcgggcggg
      421 tacttggacg agaaatgtgg cgctctcgct gccagcaacc agttggcgca cgccaggtga
      481 gggcgatacg acttcagctc cgtacccggc gaggggctga attaccacgt gatgctcatc
      541 tgcactccga tgtctcggtc tcaccgcgtc cggccgggcg cggtgcaacc aagcagacac
      601 cgggttggag acaactaccc ggacaaactg tccgggtaca tggagtagcg gcctagcgcg
      661 gaacgggaac ggcggcgttc accgcagcga gcaccgatga ccaaggtagc tctcgtcctg
      721 gagcgctccg cggctcgtgc agtggccaca cgtcatcgcc atagacaagg tggaccccgg
      781 cccggcgcag agcctcaagg tggctgtccc acgagggatg cctggcatgc gcggcgttga
      841 cccggggaaa taccaccacc ggcagctcag gaatgccgat cgcctcgttc acctgtgtca
      901 acgcctgact atcggcaatg cccagagcga gcttggccac cgtgttcgcc gaggcgggag
      961 cgacgagata gcagtccacc tgcgggtgtg ggctgcgttc ggtcggcgag cgaggctcaa
     1021 cacgcaccgg aaagcccgac acctcttcga tctccgcgag cgtcccggat tcccgcagcc
     1081 accggccagc agtcggtgtg agggtgactg tgacggtcca gcccatgttt tgagccggcc
     1141 tgatcaggcg cgggagcagc tcctccaatc cacccgagcc ggaaccgacc agacccagta
     1201 cccgtgaacc catgcggcta tcccacggcc cggcaacgct cggccagtgc cagtagcggt
     1261 gaagattttt tacctgcggt cgccggcgcc ctgcgataca tcgagcggac gacctctcgg
     1321 accaccacgc tgtgccgcac gatccccggc gatttctgtt ccgccgtgag cagagtttgc
     1381 agcgcgtcgt catctttcgc gaccaagctc agcgcccgtg cgaggtcgat cagatgcgtg
     1441 acctgacgct caactggaag atgctcaacg tgaacccgtg gcgccgagtc gattacctgg
     1501 gtgatgtcgc ccaaatcaag cgcggccgag aggcgatgca gttccacatt cgacggtccg
     1561 aagccggtct gccagtagtt cgcatcgacg cccagttggt cagccgcgcg actggcgtgt
     1621 gccagcagcc cctgtgccgt cgagcggtcc tgatgccggg cagcggctac cgccgtgcgg
     1681 aggtagagca tcccgtacaa gctcagcgcc gcaggatcac cagcctccat cctcggccac
     1741 aaccaccgcg cagcaacctc gcccagttcc aaggcgtcct cgaaccggcc aaccgccagc
     1801 aacgcgtggg ttcccgaccg ggcggccgag gccaggacca aagggtcgtc cgcgtcatca
     1861 gccgcctgca tcgcccgttc cgccgcgatc cacgcaagat cagcctcacc gatcttgctc
     1921 aacgtggtag cagcca
//
LOCUS       DASVXZ010000556         1721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1464703, whole genome shotgun sequence.
ACCESSION   DASVXZ010000556 DASVXZ010000000
VERSION     DASVXZ010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1464703"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1159
                     /locus_tag="VF788_11575"
     CDS             <1..1159
                     /locus_tag="VF788_11575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003404757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8934807.1"
                     /translation="ARLTKVVVESALEGEMDDCLGYGKHDPAGRNGRNSRNGTRPKTL
                     VTEAGPVDIEVPRDRESRFEPVIVAKRQRRLSGIDDLVISLSAKGLTHGEICAHLAEV
                     YGAQVSKQTISTITDRVMEGMTAWQDRPLDPVYPVIFIDCVNVKIREGTVANRPIYVA
                     LAVTVEGKRDILGLWAGEHGDGEGAKFWMRVLSEIKNRGVQDCLIAVCDGLKGLPEAI
                     AAVWPQTIVQTCIVHLLRNSFKYASRKDWAAIAKDLKPVYTAVSESAALDAFAEFSDK
                     WEKKYPAITRLWTNAWAEFVPFLQFDQEIRTIICTTNAIESINARIRRAVNARGHFPT
                     EQAALKCVYLAIMSLDPTGRGQQRWSNRWKAALNAFEIAFDGRLSAARNAS"
     gene            1438..>1721
                     /locus_tag="VF788_11580"
     CDS             1438..>1721
                     /locus_tag="VF788_11580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubrerythrin family protein"
                     /protein_id="HEX8934808.1"
                     /translation="MSTQEHARVIRRWRRHLANEYAEARIYRDLATRRTGEEREILLG
                     LAEAEERHASHWQGLLGEGVSPARRGSARMRVLGLLARRFGSVFVLALAQR"
BASE COUNT          309 a          474 c          598 g          340 t
ORIGIN      
        1 ggctcggttg accaaggtgg tcgtcgagtc ggccttggag ggcgagatgg atgactgtct
       61 tggttacggc aagcatgatc cggcgggtcg taatggtagg aattcgcgga atgggacgcg
      121 gccgaagaca ttggtgactg aggccgggcc ggtggacatt gaggtgccgc gagatcggga
      181 gtctcgcttt gagccggtga ttgtggccaa gcggcagcgg cggttgtctg ggatcgatga
      241 tctggtgatc tcgttgtcgg ccaaggggct gactcatggt gagatttgcg cgcatctggc
      301 ggaggtctat ggcgcccagg tgtccaaaca gaccatttcg accattactg accgggtgat
      361 ggaggggatg acggcctggc aggaccggcc gctggatccg gtgtatccgg tgatcttcat
      421 cgattgcgtg aacgtgaaga tccgcgaggg cactgtggcg aaccggccga tctacgtggc
      481 gctcgcggtc acggtggagg gcaagcgcga catcctggga ctgtgggctg gcgagcacgg
      541 ggacggggag ggcgccaagt tctggatgcg ggtgctgtcg gagatcaaaa accggggtgt
      601 ccaagactgc ctgatcgccg tgtgcgacgg gttgaagggc ttacccgagg ccatcgcagc
      661 ggtgtggccc cagaccattg tgcagacgtg tattgtgcat ttgttgcgca attcgttcaa
      721 gtacgcctcg cgcaaggact gggcggcgat cgccaaagac ctcaaaccgg tctacaccgc
      781 ggtctccgaa tccgccgcgc tggacgcttt cgccgaattc agtgataagt gggagaagaa
      841 gtaccccgcg attacacggc tgtggaccaa cgcgtgggcg gagttcgtgc ccttcctgca
      901 attcgatcag gagattcgca cgatcatttg taccaccaac gcgatcgagt cgatcaacgc
      961 ccggatccgg cgtgcggtca acgcccgggg ccacttcccg accgagcaag ccgcgctgaa
     1021 atgcgtctac ctggcgatca tgagcctgga ccccaccggg cggggtcagc aacgctggtc
     1081 caatcgctgg aaagccgccc tcaacgcctt cgagatcgcc ttcgacggac gtctgtccgc
     1141 cgctcgcaac gcatcgtgaa caatcaacaa cactgagtta caccgttagc ttgacagacc
     1201 cggaaaccat acatgctgat tgtgtgatcg gattgggatc tagcgcacat tgatgtgcta
     1261 tcactaactc aatccggtgc tggccctact tctcgtttgc ggtcggcgtg gcacggtccc
     1321 aactaagctg ttgagaatga tcaaagcggt cacgggcgat ggtcccgtgg ttggggccgt
     1381 ggtcctgcca cctctgcatc gaggcgatcc gctgcgacgg ggtgggaaca ggtcctcatg
     1441 agtacccagg agcatgctcg tgtcattcgc cggtggcggc gtcatctggc caatgagtac
     1501 gcggaggctc ggatataccg ggacctggcg acccggcgta ccggcgagga gcgcgagatc
     1561 ttgctcgggc tggctgaggc ggaggagcgc cacgcctcgc attggcaggg gttgctcggg
     1621 gagggcgtgt cccccgctcg ccggggtagc gctcggatgc gggtgctcgg gctacttgct
     1681 cgccggttcg gttcggtgtt cgtgctggcg ctggcgcagc g
//
LOCUS       DASVXZ010000557         8738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_687708, whole genome shotgun sequence.
ACCESSION   DASVXZ010000557 DASVXZ010000000
VERSION     DASVXZ010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8738
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687708"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..1014)
                     /locus_tag="VF788_11585"
     CDS             complement(136..1014)
                     /locus_tag="VF788_11585"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934809.1"
                     /translation="MVSDRIAALGYDYGALAALRPAECNLCGASESGIEISHRDRYGY
                     PATFVVCQRCGLGYLCPRLSATQYEHFYSKIYRPLVSAYHGRRIDAQTVQQDQRVYAA
                     ELAPFLLPLLPSTPRTILDVGGSTGVVAKVLATRLHAQVTVLDPAPDELAIARAAGME
                     TIAGFVEDFDPGQRTWDLVLLCQTIDHLLDLRSALSALRRMTAPEGCAFVDVVDIEVL
                     LRRIGSIERAVKIDHPYYLTGPTVAALFDLAGFTIIAQRLSDDGHRGFMLTPGPPTEP
                     DWPTLKIAAAEFLSKV"
     gene            1064..2098
                     /locus_tag="VF788_11590"
     CDS             1064..2098
                     /locus_tag="VF788_11590"
                     /inference="COORDINATES: protein motif:HMM:NF015087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016051 - carbohydrate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase family protein"
                     /protein_id="HEX8934810.1"
                     /translation="MTVLDWDHRVAVIGEVGQAHDGSLGIAHAFIDAIADAGADAVKF
                     QTHIAAAESRADEPWRVEFSYADVTRYDYWKRMEFSAQAWLGLRQHAQDRGLAFLSSP
                     FSLEAVELLRGVGVAAWKIASGEVANPQLLDAVARTGEPVLLSSGMSGWVELDRAVAQ
                     LRAAGAGPLAVLQCTSAYPVAPKGVGLNVLQEIEQRFGCASGLSDHSGTIFPALGAVA
                     LGARVIEVHVTLSREMFGPDVAASVTTGELRQLTEGVRYLSAVLAAPVDKDEIATELA
                     PMRALFGRSLVARGALPAGHVLTARDLIAKKPAGGIPPARLGSLIGCRLNRSLQPDEP
                     LQDCDIDDIG"
     gene            complement(2236..2421)
                     /locus_tag="VF788_11595"
     CDS             complement(2236..2421)
                     /locus_tag="VF788_11595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934811.1"
                     /translation="MYVSSIFTMGGDCHHDDHHDKHHDKHEKHHGHHDDCRYDCYDYY
                     YRDCYDCYGGGLLGIIL"
     gene            3210..3686
                     /locus_tag="VF788_11600"
     CDS             3210..3686
                     /locus_tag="VF788_11600"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8934812.1"
                     /translation="MSSDIPADFHLRLAKHGSDARVVTVVGQIDAPGGLELANFLIAQ
                     LEVARIVIVDLDGVQLLGSVGLSALFEANELAAQQGRALPLVCHSGIANWALEASGLW
                     EYFTFADSVPDAVQNLCRMPDVIDVGVARRLHRRRSRRSRERAATVARRAAASSGH"
     gene            3781..5364
                     /locus_tag="VF788_11605"
     CDS             3781..5364
                     /locus_tag="VF788_11605"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEX8934813.1"
                     /translation="MTDEGDLIAGRYRLISRLGAGAMGVVWQAQDERLHRTVAIKQLL
                     LASGLSHSDADEANRRAMREGRITARLHHPHAIAVYDVAEHAGQPCLIMEYLPSRSLA
                     TVLALDGELRPDAVAKIGSQIASALAAAHHAGIVHRDIKPGNVLLSDDGTAKITDFGI
                     SHAVGDVTVTATGILAGTPAYLAPEVAQGKSAGFPSDVFSLGSTLYTALEGTPPFGLH
                     DNAIAQLHQVAAGEIIPPRRSGPLTPVLLRLLQRDPGKRPAMEEARDRLTALADTLAD
                     PAGGQPVRTVPLARNNPPVTRVPRKQQTLIRAAPPDETITQATPTGVDPAAGRPPAER
                     DGSGWRKRRRFLAGAVAVVLLAGGLLVAGLINHSRLGGGIAANPPNTSASPARSLPAQ
                     PGPSGPEQNGTGQKNAPIVPGGLPDTPEQPQRAITDYYALIPDNLPTAWQRLTPKYQQ
                     NHAGGFTGYQNFWNPIQRVTVSDVTASQDGAVNATIDYFFEDGRVVEEQTSYGLVAEE
                     GQWKIDSSTVRSSQTKQGS"
     gene            5455..5706
                     /locus_tag="VF788_11610"
     CDS             5455..5706
                     /locus_tag="VF788_11610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934814.1"
                     /translation="MNHRRRSGSTNGLKTAFLLGALPALILLVGRVVGGSTGLLVALV
                     ALGINGVAYFYSDNSPYGRCGRSRLVPSRHRGYTRSSPN"
     gene            complement(5736..5876)
                     /locus_tag="VF788_11615"
     CDS             complement(5736..5876)
                     /locus_tag="VF788_11615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934815.1"
                     /translation="MADLVPQHPAQLALVDYLEDSSGDTDRSVRRAAAVANAFGVELG
                     LM"
     gene            5853..5993
                     /locus_tag="VF788_11620"
                     /pseudo
     CDS             5853..5993
                     /locus_tag="VF788_11620"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
     gene            complement(6033..7850)
                     /locus_tag="VF788_11625"
     CDS             complement(6033..7850)
                     /locus_tag="VF788_11625"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX8934816.1"
                     /translation="MTGPVGSGVASVDAVQVAGEHVYWIEGRASGDVLVRSRGSGGGE
                     EVLPTGVAVASYVHEYGGGAYLATDDALWFVRADDQQIWRATRAGLRAVTAAPPHGED
                     RYADLRLSAPGLLVAVRERHDNETVTNELVMLPDDGSAAPWPVAQGWDFYSFPRPSPD
                     WRTLAWTTWRHPLMPWDGTWLWIAEIRRDGTLGAARHIAGGPEESVFQPEWSPQGVLH
                     FVSDRTGWWDLYACPPDGDIVSLVHLESTELGTAQWEFGYSTYAFLDNDRIALLAHQG
                     GATQLRIWDRHRPDVRAVELSYTSIKPYLAVRARRVVMIGSAPDRMPTVIVVNIASGK
                     SRELTATGIASRSQAPKPEVVEIRTGDGGRVYTTLHRPRSEKDAAPVPVVIRAHPGPT
                     SSAALRLDPWVQFFVSQGFAVLDVDYRGSTGYGRAYRNALRGQWGVLDVSDCVDAVEA
                     VGRDGSLDLTRVVISGTSAGGYTALRAATNTTKFRAATIRSGIVDPAAWRSAAPKFQS
                     HHADLLLGPTNTWQDRSLLRPGITVHCPILAFHGEQDTVTPLRQVRELVAMLGKQISL
                     VVYPDEGHGLSRPKNIEHATYAELAHYRTALKPGGQWAE"
     gene            complement(7847..>8738)
                     /locus_tag="VF788_11630"
     CDS             complement(7847..>8738)
                     /locus_tag="VF788_11630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934817.1"
                     /translation="AVVDDLELITDRQRRLYHELSSAEMMVHVQAHGGLLVSLLDSAQ
                     PDSLRHRVASAAAEAAGLAAWLWYDLGDVSTMSHCYQQARLAADESSNTGLRSYILGY
                     QGLVARAQGRPESALRFFDEARLSAHRSACDSTRSWLTVLTADALARVGRSREALTAL
                     DTSRSLLAGRDSRADEWMYDFNEGSLAVHAGTCLLALGRPKSAAAELTDALRLLPVSC
                     ERRGAEIQVGLASARLVSGDVEEAQRLALSSLETFAARGSVAGLHRVRRLRGMFQVRG
                     HASVAAAIDERSRALGAVPG"
BASE COUNT         1619 a         2784 c         2811 g         1524 t
ORIGIN      
        1 gcagattttc ttgcgacgat cggggacgtc gtgcctcctg aaggacgaag agagacaata
       61 cgtgcgtaga tcgaatacta ccgtggcccc acgtggggaa gtgctggttg accagagctc
      121 acccagtcgg agggcttaga ccttgctcaa gaactccgcg gcagcgatct tgagggttgg
      181 ccagtcgggc tcggtgggcg ggccaggggt gagcatgaaa cctcgatgac catcgtcgga
      241 caagcgctgg gcgatgatgg tgaacccggc caggtcgaac agcgctgcca cggtcggacc
      301 cgtgaggtag tagggatgat cgatcttcac tgcccgctcg atgctgccga ttcggcgcag
      361 caggacctcg atatctacga cgtcgacgaa ggcgcagccc tcgggtgccg tcatccggcg
      421 gagtgccgag agcgcactgc ggaggtcgag caggtggtcg atggtctggc acagcaacac
      481 cagatcccac gtccgctgtc ccgggtcgaa atcttcgacg aacccggcga tggtctccat
      541 gcccgcagca cgtgcgatcg ccagctcgtc gggagcgggg tcgaggacgg tcacctgggc
      601 atgcagccgc gtggccagta ccttggcgac cacgcccgtt gagccgccga cgtcgaggat
      661 ggtgcgaggc gtcgagggca gcagcgggag taggaaaggt gccagctcgg cggcgtacac
      721 ccgctgatct tgctgcacgg tctgggcgtc gattcggcgg ccgtggtatg ccgataccag
      781 cgggcggtag atcttggagt agaagtgctc atactgggta gcgctcaacc tcgggcagag
      841 gtagccgagt ccgcaacgct ggcacacgac gaaggtggcc ggatagccgt agcggtcgcg
      901 gtgggagatc tcgatgccac tttcggatgc cccacacagg ttacattcgg cgggccgcag
      961 cgccgccagc gcgccataat cgtaaccaag cgcagcgatt cggtcactaa ccaccgtccg
     1021 tagcatcata ttcacccatt cgggacatat gggagtgcgt agcgtgactg tactcgactg
     1081 ggaccaccgt gtcgcggtca tcggtgaggt cggccaagcg catgacggca gtttgggcat
     1141 tgcccatgcg ttcattgacg ccatcgccga cgccggcgcc gatgcggtga agttccaaac
     1201 gcacatcgca gcggcggaaa gccgggccga cgaaccctgg cgggtcgagt tcagctacgc
     1261 cgatgtcacc cgctacgact attggaagcg gatggagttc agcgctcaag catggctggg
     1321 gctgcggcag cacgcgcagg atcgcgggct ggccttcctc agctcaccct tctcgctgga
     1381 ggcggtggag ctgctgcgcg gagtcggcgt ggccgcctgg aagatcgcct ccggcgaggt
     1441 cgccaacccg cagctgctcg acgcggtggc ccggaccggt gagccggtgc tgctctccag
     1501 cgggatgagt ggctgggtgg agctcgatcg tgccgttgcg cagctgcggg ctgcgggtgc
     1561 cgggccactg gccgtccttc agtgcacgtc ggcttatcct gtcgccccga agggggtcgg
     1621 gctcaacgtg ctgcaggaga ttgagcagcg cttcggatgc gccagcgggc tctccgacca
     1681 ctccggaacg atcttcccgg cgttgggcgc ggtggccctt ggcgcgcgcg tgatcgaggt
     1741 gcacgtcacg ctgtctcgcg agatgttcgg cccggacgtg gcggcatcgg tgaccaccgg
     1801 cgagctccgc cagctcactg agggcgtccg ttacctcagc gcggtgcttg cggcgcccgt
     1861 tgacaaggat gagatcgcaa ccgagctggc gccgatgcgc gcgctgttcg gccgttccct
     1921 ggtcgcccgc ggcgcgctgc ccgccgggca cgtgctgacg gcgagggatt tgatcgccaa
     1981 gaagccggcg ggtggcatcc ccccggcccg gctgggttcg ctgatcggct gccgtctgaa
     2041 tcgctcgctc caaccagacg agccactcca agactgtgac attgatgaca tcggctgatc
     2101 cgacttgctg cactggttct caggctcaga cggcgtcgaa acgggtgcca gaagttctcg
     2161 gaacactgtc gtgcggtggc cctgacggga atcagggcca ccgcacgaca accaatgtag
     2221 acggcttgcc ggaagctaca gaattatacc gaggagtccg ccgccgtagc agtcgtagca
     2281 gtcgcggtag tagtagtcgt agcagtcgta ccggcagtcg tcgtggtggc cgtggtgctt
     2341 ctcatgcttg tcgtggtgtt tgtcatggtg atcgtcatgg tgacagtcac cgcccattgt
     2401 gaaaatgctc gagacgtaca tattgctcct tttccgtcgg tggaggagcc ataccggcca
     2461 aacagcggga cgattctcga agagctgcgc acaaccccct gtgtgcgttg gtatgcggcg
     2521 ctgtcttgtc aggttggtct ctaccgtcag ctgcccgcca gcgacattat gcgtctggcg
     2581 agctggcccc cgacgccgac accggcagct tgtcaacccg atacgcttca ctaccccctc
     2641 gagccgatcc gccgtctccc cctactgtgc gtgatcaacc gcagctagac agtaagccat
     2701 aagagtggcg ttctgcaaca actactttac gtagctggat cggacataca gtgcttacgc
     2761 tgccatactg gcccggttca aggctcccta agatcttcga tgtggtcggg gatgtgcagt
     2821 aatgggggcc atgcggtgag gatcaggagc agccgggcgg gcatgcaaca aatgatcaag
     2881 aagttctgca ggtatcgggc tgtgacagaa tgttacctca aggtagtccg attgggtgat
     2941 ggaaatcccc gcccagcgcg tgcgtcggcg ccgccgagcg agatcgcctc catcggtagt
     3001 gccaggagtt actggcatag agctcggcgg ccttgataag gccaccgacg ccggatgccc
     3061 cgcttagcaa ggtaactcgc cgagctcgga gcacttcagc acttcggtcg cgctgtgccg
     3121 cacaccgact gaacgacacc gctcagcaac tctgactcga tcgcgtggca ctacccagtt
     3181 ttgcacgcga tattgtgccg agtatgaagg tgagcagcga cattcccgcc gacttccatc
     3241 tgcggttggc caagcacgga tccgatgccc gggtagtcac ggtagtaggt cagatcgacg
     3301 ctccgggtgg gctggaactg gccaactttc tgattgcgca gctggaggtc gcgcgcatcg
     3361 tgattgtgga cctcgatggc gtgcagctcc tcggatctgt aggactgtcc gcgctgttcg
     3421 aggcgaatga actcgctgct cagcaaggtc gcgccctgcc actggtgtgc cactcgggaa
     3481 tcgccaactg ggcactggaa gcctccggac tatgggagta cttcacgttc gccgacagcg
     3541 tgccggacgc ggtgcagaac ctatgtcgaa tgccggatgt aattgacgtg ggagtcgcac
     3601 ggcggcttca tcgacgtcga agccgccgct ctcgagaacg tgccgccacc gttgccaggc
     3661 gcgcggcagc atcaagcgga cactgatagc taccggcgcc actgggtaca cctgggtcag
     3721 cccacccggt gacggtgatg gctgcaaggt gagcacgcat cagcaccccg gaggtggcag
     3781 gtgaccgacg agggagatct gattgctggg cgctaccggc tgatctcgcg gctgggtgcc
     3841 ggagcgatgg gtgtggtgtg gcaggcgcag gacgagcgtt tgcaccgcac tgttgcgatc
     3901 aagcagctgt tgctggcgtc gggattgagt cacagtgatg ctgacgaggc caaccgcagg
     3961 gcgatgcggg agggacggat caccgcccgg ttgcatcacc cacacgcgat cgcggtctat
     4021 gacgtagcgg agcatgcggg tcaaccgtgt ctgatcatgg aatacttgcc ctccagaagt
     4081 ctggcaacgg tgttggccct cgacggtgaa ctccgccctg acgccgtcgc caagatcggc
     4141 agccagattg cctccgcgct ggccgccgca catcacgcgg gcatcgtgca tcgggacatc
     4201 aagccgggca acgtcttgct ctccgacgac gggactgcca agatcaccga cttcggcatc
     4261 tcccatgcgg tcggtgacgt cacggtgacc gctaccggga ttctcgccgg gacgccggcc
     4321 tacctggctc ctgaggtggc tcaaggcaag agcgccggct tcccctcgga cgtcttctcc
     4381 ctcggctcca cgctctatac cgcgctggag ggcacgccac cgtttgggct ccacgacaac
     4441 gcgattgccc agctccacca agtggccgcg ggggagatca tcccgcctag acggtccggt
     4501 ccgctcaccc cggtcctgct tcggctgctt cagcgcgacc ctggaaaacg cccggcaatg
     4561 gaagaggccc gggataggct caccgcgctt gccgacacgc tggccgatcc cgccggtggt
     4621 cagccggtcc gcacggtgcc gcttgcccga aacaacccac cagtcacacg ggtcccgaga
     4681 aagcagcaga cgctgatcag agcggccccg cccgacgaga ccatcactca ggcgacacca
     4741 accggggtgg atcccgcagc tggccggcct ccggctgagc gggatggaag cgggtggcga
     4801 aagcgccggc gatttctcgc cggggctgtg gcggtcgtgc tgctcgctgg cggtctcctg
     4861 gtggctggat tgatcaacca cagcaggctc ggcggcggta tcgccgccaa ccctcctaac
     4921 acctcggcca gccctgcgcg aagcctccca gcccagcccg gaccgagcgg cccggaacag
     4981 aacggaacag ggcagaaaaa cgccccgatc gtgccgggtg gcttgccgga cacaccggag
     5041 cagccgcagc gggcgatcac cgactattac gctctgatac ccgacaacct accgaccgca
     5101 tggcaacgac ttactccgaa ataccagcag aaccatgccg gcggtttcac cggttatcag
     5161 aacttctgga atcccattca gcgggtcacg gtctccgacg tgaccgcaag ccaagacgga
     5221 gcagtgaacg cgacaattga ctacttcttc gaggacggca gagtcgtcga ggaacaaacc
     5281 agctatgggc tggtcgctga agaaggtcaa tggaagatcg acagctccac ggtgcgcagc
     5341 agccagacca agcagggcag ctgagcatgc tggcccctca ggccaacgtc ggtgggtcaa
     5401 ttcccgctac caggtcgagg tcacgagaag catctgcgac acatgatgga acacatgaac
     5461 catcgcagaa ggtccggttc gaccaacggg ctcaagacag cgtttctgct gggagccctg
     5521 cctgcgctga tcttgttggt tggccgcgtg gtaggcggaa gtaccggtct cctggttgcg
     5581 ctggtggcgc tgggaatcaa cggggtggcg tatttctact ccgacaactc gccctacggg
     5641 cgatgcgggc gtagcaggtt agtgcccagc aggcaccgcg gctacacgcg atcgtcgccg
     5701 aactaacctc tcggcgagct gccgatgccc caggtctaca tcagtcccag ctcgacgccg
     5761 aacgcgttcg ccaccgccgc agcccgtcgc acgctgcggt ctgtgtcacc actggaatcc
     5821 tcgaggtaat cgactagggc gagctgcgcg gggtgctggg gcacgagatc agccacgtcg
     5881 ggaaccgcga cattctcatc gcctcggttg cggccggact ggccagcatg atcatcttcc
     5941 tggtcgacct cgcacagctc ggcgcgttgt tcggcttcgg cggcagcgac gaggattccg
     6001 gtccgggctt gctcgagatc gtcctgattt cgctactcgg cccactggcc gccgggcttc
     6061 agtgctgtgc gatagtgcgc cagctcggcg taggtcgcgt gttcgatgtt tttgggcctg
     6121 ctcaatccat gaccctcgtc cgggtagacc acaagtgata tctgcttacc gagcatcgcg
     6181 acaagttccc ggacttgacg aagtggcgtg accgtgtcct gttcaccgtg aaaggcaaga
     6241 atcggacagt ggacagtgat gccggggcgg agcaacgacc gatcttgcca agtgttggtt
     6301 gggcctagca gaaggtcggc atgatgcgat tgaaactttg gtgcggcgct acgccatgcg
     6361 gcggggtcaa cgatgccgga acgtatggtc gctgcccgga acttcgtagt gttcgtcgcg
     6421 gcccgcaacg cggtgtagcc acctgcgctc gtgccgctga tgacgacgcg ggtcaggtca
     6481 agagacccat ctcgtccgac cgcttcaaca gcatcgacgc agtcggacac gtctagcaca
     6541 ccccattgtc cgcgtagcgc gttgcggtag gcacgaccgt agccggtact gccccggtaa
     6601 tctacatcga gcaccgcgaa cccttggctg acaaagaact ggacccacgg gtcgagccgc
     6661 aacgcagcgg acgaggtcgg ccctgggtgg gcacggatta ccactggcac cggcgcagca
     6721 tctttctctg accggggacg gtgcaatgtg gtatatacgc ggccgccatc tccagtgcga
     6781 atttcgacga cctcaggttt tggcgcttgc gatctggacg cgattccagt tgcggtcaac
     6841 tcgcgagatt tgccactggc gatgttaacc acgatgacgg tgggcatccg atccggagcc
     6901 gaaccgatca tcacgactcg tctagcgcga actgccaaat acggcttgat tgacgtatag
     6961 gacaactcga cggcgcgcac atcgggccgg tggcgatccc agatgcgaag ctgggtggct
     7021 ccgccttggt gagctaggag agcgatccgg tcattatcca ggaacgcgta ggtggaatac
     7081 ccgaactccc actgcgccgt tcccaattct gtcgactcaa gatgcaccag cgagacgatg
     7141 tcaccgtcgg gtgggcaagc gtacaggtcc caccaaccgg tgcgatcaga cacgaaatgc
     7201 aggaccccct ggggactcca ttccggctgg aacactgatt cttccgggcc gccggcgata
     7261 tgccgagcag cgcccagcgt cccgtctctt cgaatctcgg ctatccatag ccaagtgccg
     7321 tcccagggca tcagcgggtg ccgccaggtt gtccaggcca gcgttctcca gtctggactt
     7381 ggccgcggga aggagtagaa gtcccagccc tgcgccaccg gccacggggc agctgacccg
     7441 tcgtccggaa gcatcaccag ctcgttggtc accgtttcgt tgtcatggcg ctcccggacg
     7501 gcgacgagaa gtcctggtgc gctgaggcga aggtctgcgt aacggtcctc gccgtgcggg
     7561 ggcgccgcag tgactgcgcg taacccggcg cgggtggccc tccagatctg ctggtcatcg
     7621 gcccggacga accagagggc atcgtcggtg gccaggtagg cgccgccacc gtattcatgg
     7681 acgtaggacg ctacggccac gccagtcggc aggacctcct ctccaccgcc cgacccgcgt
     7741 gaccggacca gaacgtcgcc gctggcccgt ccctcgatcc agtacacgtg ctccccggcg
     7801 acctgcacgg catcaaccga ggcaacgccc gacccgacgg gcccagtcat cctggtacgg
     7861 cccccaatgc ccgcgatcgc tcatcgatgg cagcagcgac ggaggcgtga cccctgactt
     7921 ggaacatccc tcgtaacctc cggacccgat gtaagcccgc aaccgaaccc cgagcagcga
     7981 aggtctccaa ggagctcagc gccaaccgtt gcgcctcctc aacgtcccct gacaccagcc
     8041 gtgcggacgc aagtccaacc tggatctctg cgccacgacg ttcacaggag acaggcaaca
     8101 agcgcagcgc atcagtgagc tccgccgcgg cgctcttcgg ccgccctagc gcgaggagac
     8161 acgttcccgc gtgtacagcg agactgccct cattgaagtc gtacatccac tcatcggctc
     8221 ggctgtcccg acccgccagt agcgaacgcg aggtgtccag cgcggtcaac gcttcgcgac
     8281 tgcggccgac tcgcgccagc gcgtccgcgg tgagcaccgt cagccacgac cgagtggagt
     8341 cacaggcaga ccgatgggcg gacagccgtg cctcatcgaa aaacctgagt gccgactccg
     8401 gccgaccctg tgcccgcgcg acgagaccct ggtagcccag gatgtaggac cgcaggccag
     8461 tgttggacga ttcgtctgcg gcgaggcgcg cctgctgata gcagtgactc atcgtggaga
     8521 cgtcacccag gtcgtaccac aaccacgcgg cgagaccagc cgcctcggcg gccgctgagg
     8581 cgacccggtg ccgcaacgag tccggctgcg cactgtccaa cagcgacacc agcagcccgc
     8641 cgtgtgcctg gacgtgcacc atcatctcgg ccgaggacag ctcgtgataa agacgccgct
     8701 gccgatcggt gatcagctca aggtcatcaa caactgca
//
LOCUS       DASVXZ010000558         4170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_419515, whole genome shotgun sequence.
ACCESSION   DASVXZ010000558 DASVXZ010000000
VERSION     DASVXZ010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419515"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..509
                     /locus_tag="VF788_11635"
     CDS             78..509
                     /locus_tag="VF788_11635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934818.1"
                     /translation="MTRRPEFHLHRVEHADCDGIMQIVPISHVELGTMMPRHSMFRAG
                     LTVAGALVALTACDNTKPTAPESTTTTTPPPTTTPPPIEIQPPQIEIQPHIEIPPQRT
                     TAPVPSPEPQPDGSQDGSLPCGSAVPPGSICTCNCVRVPAR"
     gene            678..887
                     /locus_tag="VF788_11640"
     CDS             678..887
                     /locus_tag="VF788_11640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934819.1"
                     /translation="MVGNRRNVGLDVHARSVVACGLDGQTGESFERRLTPDRGEVAAW
                     IEGLPGPAGDGRRIAWRAGRSCSTG"
     gene            887..1057
                     /locus_tag="VF788_11645"
     CDS             887..1057
                     /locus_tag="VF788_11645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934820.1"
                     /translation="MLKQPEAELDWRWLPSIADEFATVIDELPAGSRLYLTGQVKGLR
                     LDPKVRAEALLH"
     gene            1793..2983
                     /locus_tag="VF788_11650"
     CDS             1793..2983
                     /locus_tag="VF788_11650"
                     /inference="COORDINATES: protein motif:HMM:NF018479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEX8934821.1"
                     /translation="MSSASAQRPQPLVRPPALRTGQEASASRLELFFDLAYVLVVLEL
                     ASTFVSDLTWRGLGTFVGLFIAIWFSWVGFTLYANRFDTDDVIFRIAKLAATLAIAGC
                     AASASAATSEFSTPFALSFLAGRIILLLLHARAWRHVTEARPTIAVYLSSTAVSTALW
                     AVSLAVDGAPRYLLWAAAVAVDAAGPAVATWQEDRAPLHMEHLPERFGLFVILVLGEA
                     VGGAAIGVHDAKWAGASVAVGIAGFVIAGALWWNYFDITASHSADELQDRAEDHGNDD
                     GATVDERHDLFVYGHLPLTAGIVIAGVGIKDLVLHPAAALPSAGGWTLAGGMALYLIG
                     AAVILGGTHRAWRAVWPWPTAAIPVVLGAALVPHHTALLLVGGLGTASVALVILGTAR
                     GTAR"
     gene            3322..>4170
                     /locus_tag="VF788_11655"
     CDS             3322..>4170
                     /locus_tag="VF788_11655"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8934822.1"
                     /translation="MYERVAAIDVGKKIIAVAVRTPGERAGKRREQVRKDNTCHQTLA
                     KMVAWLSAEGVTHVSMEATGIYWKPIFHAVCEAERPVEVLLVNARHVKNVPGRKSDAL
                     DAVWLAELTECGLLRGSVIPPQEIAVIRELTRYRKKLIEQRTSELQRLAKVLEDGGIK
                     IDSVASALTTLSARDMIEALINGVRDPAVLADLARGRMRSKIPDLTLACAGRFGDQHA
                     LMCTLHLEHIDHLADMIARLDTRIDEASLPFVQQTTLLATIPGIGERAAQVIISEIGV
                     DMARFPT"
BASE COUNT          656 a         1371 c         1414 g          729 t
ORIGIN      
        1 ctgcgcgcca ttgtggcctc cggtgggctc ctctggcatg ccggatcgga tgcaccgagc
       61 gaccgaggag agcgactatg acccggcggc cagaattcca cctgcaccgg gtggaacacg
      121 cggactgtga cggaatcatg cagatcgtgc ccatctcgca cgtcgagctc ggcacgatga
      181 tgccccggca ctccatgttc cgggctggtc ttactgtcgc cggggcgctc gtcgctctca
      241 ccgcgtgcga caacaccaag cccacggcac ccgaatcgac cacgaccacg accccgccac
      301 cgaccacgac cccgccgccg attgagatcc agccaccaca aattgagatc cagccacata
      361 tcgagatccc gccgcagcgc accaccgccc cggtgccgtc acccgaaccg cagccggacg
      421 ggtctcagga cggttcgctg ccctgcggca gcgcggttcc cccggggtcc atctgcacct
      481 gcaactgtgt ccgtgtcccg gcccgataaa ggacgatggc ccctgacgtt tggtctgcga
      541 ggctaatcgc cgcggcggac ggagccgagg agactagacg gtatgggggt ccgggctggg
      601 acctcgccac atgtgaacgt gggttgcggg caggaatgga tcctggtcgg tactaccaca
      661 agatgtggga gggcccagtg gttgggaatc gtaggaatgt cgggttggat gtgcacgccc
      721 gctcggtggt ggcgtgcggg ctggacgggc agacgggaga gtccttcgag cggcggttga
      781 ccccggaccg gggagaggtg gccgcgtgga tcgaggggtt gccgggtccg gccggcgatg
      841 gacgacgaat agcgtggcgc gccgggagga gctgtagcac cggctgatgc tcaagcaacc
      901 cgaggccgag ctggactggc ggtggctgcc gtcgatcgcc gacgagttcg ccacagtgat
      961 cgacgagtta ccggcggggt cacggctgta cctcaccggg caggtgaagg gcctacggct
     1021 agaccccaaa gtgcgcgcgg aggcactgtt gcattaaggc agcgggcatc ctcatcacac
     1081 atcaaagtgg ggaagcaggc ccctcgggcg cctgggagac catgataaac cggacatctg
     1141 aaggcctgct ccgtggcttc tgagcaagca gtggaccacg tcgggtgggc cgatcgctta
     1201 atgcaacagt gccgacgcat cagcccagcc cgcccacccc agtgatccgc ggacgcatca
     1261 gtgccgccag gggagctgtc gcgacttccg tccgatgcgc attccttaac gtcagctcct
     1321 ccgatgcctc aagcggctgc gggaaccggt ccagctgctc aactgatctt ctctgcggac
     1381 gtgaacggag cgagcaggat cgatggttgc tgcgtccggt atgccagcca gagctgtccg
     1441 tcccgcacgc catttgccca tctcggctga cactggctcg ggtgggtcct ctccgtgggc
     1501 cgctcgcgca gggcggtacc gtccccgttt cctggtgagc cttcgcggta cttttcggtg
     1561 atggatacgc tggtccgacg gcaacctgtg tcggtgcgcg gtgctggtca tgaccgggga
     1621 aacgctgtgg gattggtttg tgctgctcct ctgacgctcc ccgatccggt taccatcgcg
     1681 gtcccgcgcg gtcaccgggg gagtcatcgg ggtcggcgct gatgctggtt ggcaactcga
     1741 gccactcgga cttggtgccc ggccgagtgg tgatggggcg gaggggcgcg ccgtgagctc
     1801 ggccagtgcc caacggccgc agcccttggt caggccgccg gccctgcgta ccggccagga
     1861 ggccagcgcg agccggctag agctgttctt cgacctcgcc tatgtgctgg ttgtgctcga
     1921 gctcgcgagc acgttcgtca gcgacctcac ttggcgcggt cttggcacgt tcgtcggcct
     1981 gttcatcgcg atctggttct cgtgggtggg cttcaccctc tacgccaacc gcttcgacac
     2041 cgacgatgtc atcttccgaa tcgccaagct cgccgccacg ctcgccatcg ccggctgcgc
     2101 ggccagcgcc tcggccgcca cctcggagtt ctccaccccg ttcgcgctca gcttcctggc
     2161 cggccggatc atcctgctgc tgctccacgc gcgagcgtgg cgccacgtca ccgaggcccg
     2221 cccgaccatc gctgtctacc tttcaagcac cgcagtgagc accgcgctat gggcggtgtc
     2281 gctggcggtc gacggcgccc cccgctacct gctgtgggct gcggccgtcg cggtcgacgc
     2341 cgccggcccc gccgtcgcca cctggcagga ggaccgcgcg ccgctgcaca tggagcacct
     2401 cccggagcga ttcgggctgt tcgtcatcct ggtgctcggc gaggccgtcg gcggcgcggc
     2461 cataggcgta cacgacgcga agtgggcggg cgcctcggtg gccgtcggca tcgccggctt
     2521 cgtcatcgcc ggggcactgt ggtggaacta cttcgacatc accgccagcc acagcgcgga
     2581 cgaactccag gaccgcgccg aggatcatgg caacgacgac ggtgcaaccg tcgacgagcg
     2641 ccacgacctg ttcgtctacg gccacctccc cctcaccgcg gggatcgtca tcgctggtgt
     2701 cggcatcaag gacctggtcc tgcatccagc ggccgcgctg ccctccgccg gtggctggac
     2761 gctggctggc ggcatggccc tctacctgat cggtgccgcc gtcatcctcg gcggcaccca
     2821 ccgcgcctgg cgagcggtct ggccgtggcc caccgctgcc atcccggtcg tcctgggcgc
     2881 cgccctcgtc ccccaccaca ccgcactgct gctcgtcggg ggcctgggga ccgcgtccgt
     2941 cgcacttgtc atactcggaa cggcccgcgg cacagctcgc tgaagggcac tgatgcccct
     3001 atggatgtca agcagcagac ggctgcgttt cgggtggaga tgtgatgatc cgatagattt
     3061 cgcgggcgat gtatcgcttg agattttgat gcctctggcg cgacgttcgc gggtcggtga
     3121 aactgggggc gcgtcgcccg ctgaggttgt tgtgccttgg tgcgggtgag cccgtgcttg
     3181 agattgacgt tggagcctgt cccggttggg tgttccgggt tgctgccttt cgagcgcgag
     3241 tctcagactc ttgatcttta tgcgggttcc gtgggcggcg cgccgtagtg gccgttcgga
     3301 agggagccca cggtggaaat catgtatgaa cgggtggccg cgatcgatgt tggcaagaag
     3361 atcatcgcgg tggcagtgcg cactccgggt gagcgagcgg gcaagcgccg agagcaggtg
     3421 cgcaaggaca acacctgtca ccagacgctg gccaaaatgg tggcctggct gagcgccgag
     3481 ggcgttacgc acgtgagcat ggaagcgacg gggatttatt ggaagccgat ctttcacgct
     3541 gtgtgcgagg ccgaacgccc tgtggaggtg ttgctggtca acgcgcggca tgtcaagaac
     3601 gttccgggcc gcaaaagcga cgccctggac gcggtgtggc tggcggagtt gaccgagtgc
     3661 gggctgctgc ggggcagcgt catcccgccc caggagatcg cggtgatccg ggagttgacc
     3721 cgctaccgca aaaagctcat cgagcagcgc accagtgagt tgcagcgcct ggccaaggtc
     3781 ctcgaagacg gcggcatcaa gatcgactcg gtagcctcgg cgctgaccac gctctcggca
     3841 cgagacatga tcgaagcact gatcaacggc gtacgcgacc cagccgtgct ggcggacctg
     3901 gcgcggggca ggatgcgcag caagatcccg gatctgacgt tggcgtgcgc gggccggttc
     3961 ggcgatcaac acgcgttgat gtgtaccttg catctggagc acatcgacca tctcgccgac
     4021 atgatcgccc ggctggacac ccgcatcgac gaggccagcc tccctttcgt ccagcagacg
     4081 acgttgctgg ccacgatccc gggaatcggt gagcgcgccg cccaggtcat catctccgag
     4141 atcggcgttg acatggcccg attccccacc
//
LOCUS       DASVXZ010000559         3873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_508868, whole genome shotgun sequence.
ACCESSION   DASVXZ010000559 DASVXZ010000000
VERSION     DASVXZ010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508868"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..862)
                     /gene="egtC"
                     /locus_tag="VF788_11660"
     CDS             complement(98..862)
                     /gene="egtC"
                     /locus_tag="VF788_11660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtC"
                     /protein_id="HEX8934823.1"
                     /translation="MCRHLVYLGPPRDLATLLLDPPHSLLRQSYAPADMRGGGTVNAD
                     GFGAGWYPDSTATPVRYRRAVPIWTDTSFFALAGQVRSGAVLAAVRSATVGMPVVESA
                     CAPFATGPWLFSYNGVVSGWPDSVAQLASRLPVTDLLTLDAPTDAALLWALVRHRLVA
                     GDSLGCALGAVTAKVLAAAPGSRLNLLVTDGTRLAATAVYHALAVRVLDGGVLACSEP
                     IDQFAGWETIPDCHLLTATSSTVDVVPIPTPTAEEP"
     gene            complement(865..2199)
                     /gene="egtB"
                     /locus_tag="VF788_11665"
     CDS             complement(865..2199)
                     /gene="egtB"
                     /locus_tag="VF788_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006240402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HEX8934824.1"
                     /translation="MSVVIIELSTAALRDHVAVELERTRVRSAALTSAVDDGELARQH
                     SPIMSPLVWDFAHIGNQEELWLVRDVGGRDPVRSDIDHLYDAFKHPRPNRPALPLLDP
                     TQTRRYLGEVRNKVLDVLERAPLEGRRLVEHGFAFGMIVQHEQQHDETMLATHQLRVG
                     PAALHAPAPEPQRAPALPTEVLVPAGEFTMGTSAEPWALDNERPAHRAHTGAYWLDTT
                     PVTNRAYQRFLAGGGYDDPGWWSARGWAHRCEVNLVAPQFWVADGGSWWRTRFGVTEP
                     VPPDEPVTHVSFFEAQAYAAWAGKRLPTEVEWEKAARFDPATGRSRRFPWGDEDPTPA
                     HANLGQRHLQPAPAGSYPAGASPLGVHQLIGDVWEWTSSGFSGYPGFAPFPYREYSEA
                     FFGGDYRMLRGGSFATDAVACRGTFRNWDHPMRRQIFTGFRCARDFDPEDLA"
     gene            complement(2196..3554)
                     /gene="egtA"
                     /locus_tag="VF788_11670"
     CDS             complement(2196..3554)
                     /gene="egtA"
                     /locus_tag="VF788_11670"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis glutamate--cysteine
                     ligase EgtA"
                     /protein_id="HEX8934825.1"
                     /translation="MTAEATRPWASAPAAPPTVLRCREEAEVYVASVCFKHGPPRLLG
                     AELEWVVQHSGNPHLPLQAQHLAEALGVHVPHSLVPDSPQTPLPYGSTVTVEPGGQLE
                     ISSPPCASLTELIATVEGDTAALTGLLDPAGLVLTGSGSDPHRPSRRVIDIPRYAAME
                     TAFDRIGPMGRAMMCSTASVQVCLDAGTPADMALRWAALHDLGPVLVAAFANSPWLGG
                     QRTGWVSSRMQAWLALDPVRTRPSPVRSDLAADWDPAADWARRVLDTPLLCQRRPWGK
                     WHVPSGVTFADWLSGALPGRPSIADLDYHLTTLFPPVRPQGYLEVRYLDTQPVGQWLV
                     PVAVLAALLADPAVTAAARDACAPAAGRWWLAAEHGLHDDTLAGAATAVFELACDALP
                     ALNGPAEVQLLVEEITEHRVRRGLCPADELAGETNQGIAAGVGTRRNGTQPAGLHGGQ
                     LL"
BASE COUNT          653 a         1316 c         1337 g          567 t
ORIGIN      
        1 agccacttgg gatcggcgga cagcccgacc cgcacgtcat gatgcagcgc atcggcggca
       61 tcggagtcgg acaggtggat ctcgagcacg ggtgcggtca tggctcctcc gccgtgggtg
      121 taggaattgg cacgacgtcc actgtggatg atgtcgcggt gagcaggtga caatccggga
      181 tggtttccca accggcgaac tggtcgatgg gctcggaaca agccagcact cccccgtcta
      241 ggacccggac cgccagcgcg tggtacaccg ccgtcgcagc gagtctggtg ccgtcagtga
      301 ccaggaggtt caatcgtgag ccgggtgctg cggccagcac tttcgccgtg accgcaccca
      361 gcgcacaacc cagcgaatcg ccggccacca ggcggtgccg caccagcgcc cacagcaatg
      421 ccgcatccgt gggcgcatcg agggtgagca gatcggtgac cggcaggcgg ctggccagct
      481 gagccacgct atccggccag ccgctgacca ccccgttgta gctgaacaac cacgggccgg
      541 tggcgaacgg tgcacacgcg ctctccacca ccggcatccc caccgtggcc gagcgcaccg
      601 cggcgagcac cgcaccgctg cgaacctgac cggccagtgc aaagaaggag gtgtcggtcc
      661 agatcgggac cgcccgccgg taacggactg gtgtggctgt gctgtcgggg taccaacctg
      721 caccgaagcc gtcggcgttg acggtgccac caccgcgcat gtcggccggt gcgtagctct
      781 gccgcagcaa tgagtgcggc gggtccagca gcagcgtcgc gagatcgcgc ggcggcccga
      841 ggtagaccag gtgtcggcac acggtcaggc caggtcctct ggatcaaaat cccgggcgca
      901 gcggaatccg gtgaagattt gccggcgcat cgggtggtcc cagttgcgga aagttccccg
      961 gcaggccacc gcgtcggtgg cgaatgaacc tccgcgcaac atgcggtagt ccccgccgaa
     1021 gaacgcctcg gaatactccc ggtaggggaa cggcgcgaag cctggatagc cggaaaagcc
     1081 cgaggatgtc cactcccaaa catcgccgat gagctggtgc acccccagcg gtgatgcgcc
     1141 agccgggtag cttcccgcag gagcgggctg caggtgacgc tgccccaggt tggcgtgcgc
     1201 cggggtggga tcctcatcgc cccacgggaa gcgccgcgag cgtccggtgg cggggtcgaa
     1261 ccgggcggct ttctcccact ccacctcagt gggcaggcgc tttcccgccc acgccgcgta
     1321 ggcctgtgcc tcgaagaaac tgacgtgcgt gactggttca tcgggtggga ccggttcggt
     1381 tactccaaat cgagtgcgcc accacgaccc accgtcggca acccagaact gtggggcgac
     1441 gagattcacc tcgcaccggt gcgcccagcc tcgcgcactc caccaccccg ggtcgtcgta
     1501 gccaccgccg gccaggaatc gctggtaggc gcgattggtc accggggtgg tgtccagcca
     1561 gtacgcgccg gtgtgagccc gatgcgcggg gcgctcgtta tccagcgccc acggctcggc
     1621 agatgtgccc atggtgaact cgccagcggg taccagcacc tcggtgggca gggccggagc
     1681 ccgctgcggc tccggggcag gagcatgcaa cgccgccgga ccgacccgaa gctggtgggt
     1741 ggccaacatc gtttcgtcat gctgctgctc gtgctgcaca atcatcccga acgcgaagcc
     1801 gtgctccacc agcctgcgac cctccagcgg ggcgcgctcc agcacgtcga gcaccttgtt
     1861 ccggacctcg cccagatatc gccgagtttg cgtcggatcc agcagcggca gcgcgggccg
     1921 gttcggccgg ggatgcttga acgcgtcata gaggtggtct atgtcggacc ggacgggatc
     1981 gcgcccgccc acgtcacgga ccagccagag ctcttcctgg ttgccgatgt gggcgaagtc
     2041 ccagaccagc ggggacatga tcggggagtg ctggcgggcc agctcgccgt catccaccgc
     2101 actggtgagg gcggcgctgc ggacgcgggt gcgctcgagc tcgacggcaa cgtggtcccg
     2161 cagggccgcg gtgctcagtt cgatgatcac cacgctcaca gcaactgccc tccatgaagt
     2221 ccggccggtt gggtcccgtt acgccgcgtg ccgaccccgg cggcgatacc ctggtttgtc
     2281 tcgcccgcga gctcatctgc cgggcaaaga ccgcgccgaa cccggtgctc ggtgatttcc
     2341 tccacgagca actgcacttc ggccgggccg ttcagcgcgg gcagcgcgtc gcatgcaagt
     2401 tcgaataccg cggtcgccgc accagcgagg gtgtcgtcgt gtaagccatg ttcggccgcc
     2461 agccaccacc gtccagcggc gggcgcgcag gcatcccggg cggccgcggt gaccgcggga
     2521 tcggccagca gggcagccag cacggctact ggtacgagcc actgccccac cggctgggtg
     2581 tccaggtagc ggacctccaa gtagccctgc ggcctgaccg gcgggaacag agtggtcagg
     2641 tgatagtcca gatcagcaat gctgggacgg ccgggcagcg ccccggacag ccagtcggcg
     2701 aaggtgactc cgctgggcac atgccactta ccccaggggc ggcgttggca caacaacggg
     2761 gtgtctaata cccggcgggc ccaatcagcg gctggatccc agtccgccgc caggtccgag
     2821 cgcaccggac tcggtctggt acggaccgga tccagtgcta accatgcctg cattcgggag
     2881 gagacccacc ccgtgcgctg gccccccagc cagggggaat tggcgaaggc cgccaccaat
     2941 accggtccaa ggtcgtgcag agctgcccag cgcagcgcca tgtcagcggg ggtgccggcg
     3001 tccaggcaca cctggactga ggcggtggag cacatcatcg cccggcccat cggcccgatt
     3061 cggtcgaaag cggtctccat cgcggcgtag cggggaatgt cgatcacccg gcgggacggg
     3121 cgatgcgggt cggagcctga gccggtgagc accagaccgg cgggatcgag cagaccggtc
     3181 agtgcggcgg tatcgccctc cacggtggca ataagctcgg tcagcgaggc gcaaggcggg
     3241 ctggagatct cgagctggcc accgggttcg accgtgacgg tggagccgta gggaagaggg
     3301 gtttggggac tgtcaggaac cagggaatgc gggacgtgca cgccgagcgc ttcggctagg
     3361 tgctgagcct gcaacgggag gtgggggttc cccgagtgct gcaccaccca ctcgagctcg
     3421 gcgccgagca gcctcggcgg cccgtgcttg aaacagacgg acgcgacgta gacctcggct
     3481 tcttcacgac agcgcaacac tgtcggcggt gccgcgggag ctgaagccca aggccgcgtt
     3541 gcctctgccg tcacgaccca cctcctggga atggataggc ccccgccacg ctacccagtt
     3601 agcccgacac ctgcagcgct acgccaaccg ttcgtcccac gaccgcgtcc ggttcccgcc
     3661 tcggcgtgtc gctctctcat gcccagctcc cggcctcatg ggaccgacac tccgtgcacc
     3721 ggcgaccgac acgtcggggg ttagacgagg gcgaactgtg tgtggtgcag ctgcgcgtac
     3781 cggccgccgg cggtgagcag ctcctcatgg gtgccgcgct cgatgatcag gccatcctcg
     3841 atcaccagga tctggtccgc ggcgcgaatg gtg
//
LOCUS       DASVXZ010000560         1875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1285635, whole genome shotgun sequence.
ACCESSION   DASVXZ010000560 DASVXZ010000000
VERSION     DASVXZ010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1285635"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            323..922
                     /locus_tag="VF788_11675"
     CDS             323..922
                     /locus_tag="VF788_11675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HEX8934826.1"
                     /translation="MCVAADAEFSEVLADWTERMYREHAAVHHVDVTRGATLYRVFLL
                     ADTLQVDLAFWSAAEFGATAPTFRLLFGTANEPQMSPAPLATELIGMGWLYALHARSS
                     IARGRVWQAEYMISAVRDHVLALACLRHGVAAVQGRGMDNLPPEVTAPLTEALVCSLD
                     IAELRRAFGVISEALVVEIERVDHSLANRLCEPLRQLAS"
     gene            complement(1148..>1875)
                     /locus_tag="VF788_11680"
     CDS             complement(1148..>1875)
                     /locus_tag="VF788_11680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934827.1"
                     /translation="IRGFLDACGRLGVRVPLLYLPHWYWERLGRPSLTGLPPLWGSSY
                     VSPSVASAPASVMYQSHAATGWDAYGSLGVEVLQFTDRAQVAGRLIDANHYRGTREQF
                     TALIGRPHHRKDHHEMDQLPATAMPGDPNSDPHSWPQLSYDVGFDPAGGWEGGFAFSF
                     GVQEWAGRSSDPSRGHLSLASWIMADRSLVPVNPVFTPEGAGQVIFAHNPTRTYGAPD
                     GAVGLTLNYAAPGGAYVTEARSG"
BASE COUNT          309 a          579 c          641 g          346 t
ORIGIN      
        1 tggtcgaagt accagtcgag atacgcggcg atcatgtcgg gcgaaggatc ctggctcacg
       61 atcccgaaag tatctcaaca ccggcgccaa ccacggccct caccgcagag gacccgcctg
      121 ttgttgccga gttcggcctc agggtgtccc gtacgcgtgt gctcgtaggg tgaggcgctg
      181 tgttcacacc ggagcagcgc gaacggctgc gtgaggtact ggtttcggcg gcgtatgccg
      241 atactcgcat taccggtgcc gcggtgaccg ggtcagccgc cgtcggtcgg gaagatcggt
      301 ggtcggacat cgatctcgca ttgtgtgcgt tgccgctgac gccgaattca gcgaggtgct
      361 cgctgactgg accgagcgta tgtaccggga gcatgctgca gtccatcatg tggatgtgac
      421 ccggggagcg acgctttacc gggtcttcct gctggctgac actttgcagg tcgatctagc
      481 tttctggtcg gcggcggagt tcggtgccac cgccccgact ttccggctgc tgttcgggac
      541 tgccaacgaa ccgcagatgt caccagcacc tctcgctact gagctgatcg gtatgggctg
      601 gctttatgcg ctgcatgctc gttcgagcat tgcgcgcggc cgggtctggc aggcggagta
      661 catgatcagc gccgtgcgcg accacgtcct tgctctggcg tgcctgcgtc acggtgttgc
      721 cgctgttcag ggccggggca tggacaacct tccaccggag gtcactgcgc cgctcaccga
      781 ggcgcttgtc tgttcgcttg acatcgctga gctcagacgc gcttttggtg tgatcagcga
      841 ggcgctggtc gtcgagatcg aacgggttga tcacagcttg gcgaaccgcc tgtgtgagcc
      901 attgagacag ctggccagtt gatcgtcagt gtcggagcca gacgcctgcg cgccgaccag
      961 cacggcgagc gcgaacgcga tgttgccagt ggttcgggtc tggccggtag acgtgatcat
     1021 gcggtctggg ggtagtaagc gtggtctgat ggtgtgtatg gtccgttgcg ctcctggacc
     1081 cggacccccg acctaggtcc aggagccctg acccgatatg agcgcggagc agctggccgc
     1141 gagcgactca acccgagcgg gcttcggtga catacgcgcc gccgggcgcg gcgtaattga
     1201 gggtcaagcc caccgcgccg tcgggcgcgc cgtaggtgcg ggtcgggttg tgcgcgaaga
     1261 tcacctgccc ggcaccctcc ggggtgaaca ccggattgac cggtaccagg ctgcgatccg
     1321 ccatgatcca tgacgccagc gacagatgtc ccctgctggg atccgagctg cggccggccc
     1381 actcctgcac cccgaagctg aacgcgaagc caccctccca cccaccggca ggatcgaagc
     1441 cgacgtcgta gctcagctgt ggccaactat gagggtcact gttgggatcc ccgggcatcg
     1501 cggtagcggg tagctgatcc atctcgtggt gatccttacg atgatgtggt cgaccgatca
     1561 gtgcagtgaa ctgctcacgg gtgccccggt agtggttcgc gtcaattaac cgaccggcca
     1621 cctgggcgcg gtcggtgaac tgcaggactt cgacgcccag cgacccgtag gcatcccagc
     1681 cggtcgcggc gtgcgactgg tacatcaccg acgcgggcgc ggaggcgacg ctgggactga
     1741 catatgagga gccccacaat ggtggcagtc cggtgagcga ggggcgtccg agccgctccc
     1801 agtaccagtg gggcaggtac agcagcggca cgcgcacacc gagacggccg caggcgtcca
     1861 ggaagccgcg gatcc
//
LOCUS       DASVXZ010000561         4834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_151509, whole genome shotgun sequence.
ACCESSION   DASVXZ010000561 DASVXZ010000000
VERSION     DASVXZ010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4834
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151509"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1141
                     /locus_tag="VF788_11685"
     CDS             <1..1141
                     /locus_tag="VF788_11685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8934828.1"
                     /translation="KIGTLLPETGSLNFLGPPEFAAVNVAIKEVNAAGGVLGNPVVHI
                     RGDSGDDKTDTANQTVDREFGERVQVIIGAAASGVTKLVIDKITGAGAVEFSPANTSD
                     EFTCWPDKGLYFRTAPPDVLQAQALAELMAGDGAQRISILARNDPYGSGLANNTEENL
                     RKAGIPQNQIQKIIYDPNATSYNTEIDDIRQFNPDAIAVIGFDESKKIITRMSEVKIG
                     PGQKLVYGTDGNMGNALGMGLPPGLLNGMKGTRPETKLSPAFEQRLKAEDPRLVDINY
                     AGETYDAVMIVALAAERAKSTKGVDIASEINGITKDGEKCTTFRQCRDIIDSGGNPDY
                     DGVTGTLDFTAAGERAVGSYAILKFNALNKLDEAAVQYRTVGGSR"
     gene            complement(1224..2024)
                     /locus_tag="VF788_11690"
     CDS             complement(1224..2024)
                     /locus_tag="VF788_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934829.1"
                     /translation="MASDRSSAAELAATPQRHRELARSALLRADDLVAGYLPGVNILQ
                     ECNFFLRQGEIVGIIGPNGAGKSTLLKAMFGLIPVRGGTVALRGADVTSAKAHTLVTK
                     GVGYVPQSNNVFGSLSIEENLQMGVYLRPRTFNARFDVVCTLFPLLGERRKTKAGALS
                     GGERQMVAMGRALMMDPSVLLLDEPSAGLSPMFADEVFVRCKKINAAGVSIVMVEQNA
                     RRCLQVCDRGYVLDQGRNAYTDTGSALMNDPKVVELYLGTLTGTRKTP"
     gene            complement(2060..3007)
                     /locus_tag="VF788_11695"
     CDS             complement(2060..3007)
                     /locus_tag="VF788_11695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934830.1"
                     /translation="MRAEHPWAVEPPWDAVSAQPGAPKPDPVLVIDSITRSFGGLRAV
                     DVAHLEFQRGWITGLIGPNGAGKTTLFNLITGFDRPNTGCWTFNGVPLSRLAPHQVAR
                     RGVVRTFQLTKALAKLTVLDNMRLGAPKQTGERFFGALLSTWARQERDITDKAMELLT
                     RFRLDAKAGDLAGSLSGGQRKLLEMARALMMDPIVVMLDEPMAGVNPALTESLLQHVK
                     SLREDGMTVVFVEHDMDVIRDISDWVVVMAQGRVIAEGRAEALSSNKAVVDAYLGAHH
                     DQALEFDAQGDPVGQTAVLVAEIENELEAAIERGEDLSA"
     gene            complement(2997..3995)
                     /locus_tag="VF788_11700"
     CDS             complement(2997..3995)
                     /locus_tag="VF788_11700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX8934831.1"
                     /translation="MIDISALITNGVAALVGPSAIFFALLAIGLNIHFGYTGLLNFGQ
                     IGFALVGGYGMGIAVLYFGLPLWSGALVGMLAGVALALLLGIPTLRLRADYLAIVTIA
                     AAEILRLITRSTSLTNFSGGTQGLTGYGESFRQLSPFDNGHFYNFFGVRFLGQDLWSI
                     CVGWAVVGLSLILVFLLVRSPWGRVLKAIREDEDAARALGKNVFVYKMQALALGGVFG
                     AVGGIVFALTTQSLTPDFYSPPQTFFAYAALIIGGAGRVFGPVIGSMVFWFVLSITDN
                     FLRQATAGSNPLISFIDNQDVGAMRFILVGVGLMLLMVFRPQGIFGKRSEVLLDAR"
     gene            complement(4000..>4834)
                     /locus_tag="VF788_11705"
     CDS             complement(4000..>4834)
                     /locus_tag="VF788_11705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX8934832.1"
                     /translation="GITGVGLSLIFGTTGLTNFAHGELVTIGAVLAWTLNVAAGLQLI
                     WATLLAIVAGAALGAANDLGIWRPMRRRRAGLIAQLVISIGLALTLRYLVLIYLGGRS
                     ESFADYTNQVERNYGLISITDKDLATIAISLAVLVGIALLLQRTRIGKAMRAVSDNRD
                     LAASSGINVERVVLFVWALAGALAALGGVLFGLSELSGTVQYEMGFNLLLLMFAGVIL
                     GGLGTAYGALVGCLIVGVLVQISAQIIPVDLKYLGGLAVLIVILVIRPQGLLGSRARI
                     G"
BASE COUNT          999 a         1579 c         1465 g          791 t
ORIGIN      
        1 gaagatcggc acgttacttc cggagaccgg cagcctgaat ttcctcggtc ctcccgaatt
       61 cgcggctgtc aacgtggcga tcaaggaggt caacgcagcc ggcggagtgc tgggcaatcc
      121 ggtcgtccac atccgaggtg actctggtga cgacaagacc gacacggcca accagaccgt
      181 ggaccgggaa ttcggcgaac gcgtgcaggt aatcatcggc gccgccgcct ccggagtgac
      241 caagctggtc attgacaaga tcactggcgc tggcgcggtc gagttctccc ctgccaacac
      301 ctccgacgag ttcacctgct ggcctgataa aggcctgtac ttccggactg ctccgccgga
      361 tgtgctccag gcccaggccc tagcggaact gatggctggt gatggtgcgc aacggatctc
      421 cattctggcg cgcaacgatc cctatggcag cgggctggcc aacaatacag aggagaacct
      481 gcggaaggcc ggtatcccgc agaaccagat tcaaaagatc atctatgatc cgaacgcgac
      541 gtcctacaac accgagatcg acgatatccg acaattcaat ccggatgcga ttgcggtgat
      601 cggcttcgac gagtcgaaaa agatcatcac acgtatgagc gaggtgaaga tcgggcccgg
      661 tcagaagctc gtctatggca ccgacggcaa catgggcaac gcgctcggca tgggcctgcc
      721 gcctggcctg ctcaacggga tgaagggcac caggcccgag accaaactct cgcccgcctt
      781 cgagcaacgg ctaaaggccg aggacccgag actggtggac atcaactacg ccggtgagac
      841 ctatgacgcc gtcatgatcg tcgccctggc tgccgagcga gcgaaatcca ccaagggtgt
      901 ggacatcgcc tccgagatca acgggatcac caaagacggt gagaagtgca ccacttttcg
      961 ccaatgccgc gacatcatcg acagcggtgg taatcccgac tacgacggcg tcacaggcac
     1021 gctggatttc accgctgccg gtgagcgggc cgtcggttcc tacgcaattc tgaagttcaa
     1081 tgccctcaac aagctcgacg aggccgccgt ccagtaccgc acggtggggg gcagccgcta
     1141 accgcgatac cacgttcaac gggctcagcg tggtagcggt ggctgcatta accccgtcgc
     1201 gcccgctgaa tccgttgtga tcgttagggt gttttgcgtg tgccggtgag ggtgccgagg
     1261 tagagctcga cgaccttggg gtcgttcatg agcgccgagc cggtgtcggt gtaggcgttg
     1321 cgaccttggt ccaggacgta cccgcggtcg cagacttgca gacaacgccg ggcgttctgc
     1381 tcaaccatga cgatggagac gccagcagca ttgatcttct tgcagcgcac gaacacctcg
     1441 tcggcgaaca tcggcgataa cccggcagat ggctcgtcga gcagcagcac cgatgggtcc
     1501 atcatcaaag cccgacccat cgcgaccatt tgccgctctc caccggacag cgccccggcc
     1561 ttggtcttgc gccgttcgcc cagcaggggg aacaaggtac acaccacgtc gaacctggca
     1621 ttgaaggtac gggggcgcag gtacacgccc atttgcaggt tctcttcgat actcagcgag
     1681 ccaaacacgt tgttgctttg cggcacataa cccacgccct tggtgaccag ggtgtgagct
     1741 ttggccgagg taacgtcggc cccgcgcaac gccacggtgc caccgcgcac cgggatgagc
     1801 ccgaacatgg ctttgagtaa cgtcgattta cctgctccgt tgggtccgat aatgccgacg
     1861 atctcccctt ggcgaagaaa gaaattgcac tcctggagaa tgttcacgcc gggcaggtaa
     1921 ccggctacga ggtcgtcggc ccgtaacaat gcgctccgcg ccagctcgcg atgccgctgg
     1981 ggagtcgcag cgagctccgc agcggacgat cgatcgctcg ccacgccgtt accattccgg
     2041 ctattggcac tcggcgcgct cacgccgaga gatcctcacc gcgttcgatg gccgcctcga
     2101 gttcgttctc gatctcggca acgagcactg ccgtctgtcc cacagggtca ccctgagcgt
     2161 cgaactccaa tgcctgatcg tggtgcgcac cgaggtaggc gtcgacgacc gccttgttgg
     2221 acgacagcgc ctccgcccgc ccctcggcga tgacccggcc ctgcgccatc accaccaccc
     2281 agtcgctgat atcccggatg acatccatgt catgctcgac gaacaccact gtcatgccgt
     2341 cctcacggag cgacttgacg tgctgcaaaa gactctcggt gagcgctggg ttcacccccg
     2401 ccatcggttc gtcgagcatc acgacgatcg ggtccatcat cagtgccctg gccatctcca
     2461 ggagtttgcg ctggccgccg gacagcgagc cggcgagatc gccggccttg gcatccagcc
     2521 ggaaccgggt gagcaactcc attgccttat cggtgatgtc acgttcctgc cgcgcccacg
     2581 tgctgagcaa ggcaccgaag aaccgttccc ctgtctgctt cggcgcgccc agacgcatgt
     2641 tgtccagcac tgtgagcttg gcgagcgcct tggtgagctg gaatgtgcga accactccgc
     2701 ggcgggccac ctggtgcgga gcgagccggg acagtggcac tccattgaag gtccaacagc
     2761 cggtgttggg ccggtcgaat ccggtgatca ggttgaacag ggtggtcttg cccgccccgt
     2821 ttgggccgat caacccggtg atccagcctc gctgaaactc caggtgggcc acgtcgacgg
     2881 ccctcaagcc accgaacgag cgggtaatcg agtcgatcac cagcaccgga tcgggcttag
     2941 gggcacccgg ttgcgcggac actgcgtccc acggaggctc aacggcccac ggatgctcag
     3001 cgcgcatcga gcagcacctc gctcctcttc ccgaagatgc cctgcggtcg gaacaccatc
     3061 agtagcatca ggcctacccc taccaggatg aaccgcatcg caccgacatc ctgattgtcg
     3121 atgaatgaga tcagtgggtt actacccgcg gtggcctgac gcaggaagtt gtcggtaatg
     3181 gagagtacga accagaagac catcgagccg attaccggac cgaacacccg gccagcgcct
     3241 ccgatgatga gcgccgcgta agcgaagaaa gtctgtggtg gggagtagaa gtcaggcgtc
     3301 agcgattggg tggtcagcgc gaacacgatc ccgccgaccg cgccgaacac cccgcccagc
     3361 gccagcgcct gcatcttgta aacgaagacg ttcttgccca gtgccctggc ggcatcctcg
     3421 tcctcgcgga tcgccttgag cacccgaccc cacggactgc gtaccaggag gaacaccaag
     3481 atcagtgaca ggccgaccac agcccagccc acgcagatcg accacagatc ctggcccagg
     3541 aaacgtactc cgaagaagtt gtagaagtgg ccgttgtcga acggggagag ctggcggaag
     3601 gactccccgt agccggtgag gccttgagtt cctccggaga agttggtcaa cgaggttgac
     3661 cgggtgatca gccgcaggat ctccgcggcc gcgatcgtga cgatcgcgag gtagtccgcg
     3721 cgcaacctca gtgtcgggat gccgagcaac agcgcgagcg caaccccggc gagcatcccc
     3781 accagtgctc ccgaccacag cggcagaccg aaatacagca ccgcgatgcc catgccgtat
     3841 ccaccgacca gggcgaagcc gatctgaccg aagttgagca ggccggtgta gccgaagtga
     3901 atgttcaggc cgatcgccag caaggcgaag aagatcgctg atgggccgac cagcgccgcg
     3961 acgccgttgg tgatcagagc cgagatgtcg atcatctgct cacccgatcc gcgcgcggct
     4021 accgagcaac ccctgcggtc tgatcaccag gatgacgatg aggaccgcga ggccgcccag
     4081 gtacttcagg tcgactggaa tgatctgggc cgatatctgc accagcacgc cgacgatcag
     4141 gcagcccacc agggcgccgt aggcggtgcc cagcccaccc agaatgacgc cggcgaacat
     4201 cagcagcagc aggttgaaac ccatctcgta ctgcactgtt ccgctcagct ccgacagacc
     4261 gaacaacaca ccgcccagcg ccgccaaagc accggccaac gcccagacga agagcaccac
     4321 ccgctcgacg ttgatacccg acgaggctgc gaggtcccgg ttgtcggaca ccgcgcgcat
     4381 cgccttgccg atccgggtcc gctgcagcag cagcgcgatc cccaccagaa cggccaggct
     4441 gatcgcgatc gtggcaaggt ccttgtcggt gatgctgatg agtccgtagt tgcgctcgac
     4501 ctggttggtg tagtcagcga aggactccga gcggccacca aggtaaatca acaccaggta
     4561 gcgcagcgtg agcgccaagc cgatggagat caccagctgg gcgatgagac ctgctcggcg
     4621 tcgtcgcatc ggccgccaga tgcccaggtc attcgccgcg ccgagggccg caccggccac
     4681 aattgccagc agagtggccc agatcagctg cagcccagcg gcgacgttga gggtccaggc
     4741 cagcacagct ccgatcgtga ccaactcacc atgcgcgaag ttggtcagcc cggtggttcc
     4801 gaagatcaac gacagaccga ccccggtgat cccg
//
LOCUS       DASVXZ010000562         1790 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1763429, whole genome shotgun sequence.
ACCESSION   DASVXZ010000562 DASVXZ010000000
VERSION     DASVXZ010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1763429"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VF788_11710"
     CDS             <1..346
                     /locus_tag="VF788_11710"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8934833.1"
                     /translation="AARNYCLEPGAIFHTDRGSQYLSQAFAETATQLDIRQSVGRVGS
                     CFDNALAESFNAALKVERVNRTVYPTREHARKDVARYIEFHYNTKRLHSTLGYRTPRE
                     AHTDYLNQRQAA"
     gene            complement(648..995)
                     /locus_tag="VF788_11715"
     CDS             complement(648..995)
                     /locus_tag="VF788_11715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934834.1"
                     /translation="MGWIHLQLWLDGYREIPVVGILFLLNAIGAVALAAALLVAPGRL
                     LSAAAMVTALFTAGTLAGLVLSLTVGLFGVHESLHTPLVPATLSVESTGVLVLVVTVI
                     LAIRSPGDRPSTS"
     gene            complement(1121..>1790)
                     /locus_tag="VF788_11720"
     CDS             complement(1121..>1790)
                     /locus_tag="VF788_11720"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEX8934835.1"
                     /translation="KYLSNPHAISSARPTPTWGLALGRALDLTVVIVALTVLAIPMLI
                     IGLVIRLTSKGPALFQQQRIGYRGETFTMYKFRTMRTGVGDEMLRELITAELCGEDTL
                     VNGSCKLDGDPRVTGIGAFLRKTSLDELPQLLNVLFGDMSLVGPRPCLEWEAHMFPAQ
                     FQPRFSVRPGITGLWQVSGRSTVGTLEMLHLDVAYVRTRSTVGDLSILLRTVPSMLRD
                     HSAR"
BASE COUNT          371 a          594 c          553 g          272 t
ORIGIN      
        1 ggccgcccgt aactactgcc tcgaacctgg agcgatcttc cacaccgatc gaggatctca
       61 atacctcagt caagccttcg cagagaccgc cacccagctc gacatccgac aatcggttgg
      121 acgcgttggc tcatgctttg ataatgcgct cgcggaatcg ttcaacgccg cgctcaaagt
      181 cgagcgggtg aaccggactg tgtacccaac tcgggaacac gcccgcaagg acgtggccag
      241 atacatcgag ttccactaca ataccaaacg actccactcg acgctaggct accgaacccc
      301 acgggaagcc cacaccgact acctaaatca gcggcaagcg gcctgacaaa actaatagaa
      361 gctatccgga aaacgcgggg cagcccaacc acctcaccgg caacacgcgc gaactcaccg
      421 gaacgctcgc gacgctggtc agcgagctcc gtggcgatgc cagcagtccc gatgcgccag
      481 cgctccccac gaccctgccc gaggtcaccc gcctggtcga cgccaatgac gggctccgtt
      541 tcggccaact cgcggtcacg ttgtgccccg acccagcaac cgccgaacaa gccctggccg
      601 atctgttaac caccgccgcg acctgcgccc aacagtccct tggcaggtca tgaggtgcta
      661 ggccggtcgc caggggatct gatcgcaagt atcacggtga ccacgagcac gagcactccg
      721 gtggactcga cgctcagcgt ggcgggcacg agcggggtat gtagtgactc gtgcacgccg
      781 aataggccca cggtcaggct gaggaccagc cccgccaggg ttcccgcggt gaagagggcg
      841 gtgaccatgg cggcagcgct gagcaggcgg cccggcgcga cgagtaacgc tgcggccagc
      901 gccacggcgc cgatcgcatt gagcagaaac aatatgccga ccaccggaat ctcgcggtag
      961 ccatccagcc acagctggag gtggatccac cccatggtgc cagttagacc tgctcccagt
     1021 agccgagcag ctaacatcgg cacgaccagg ttgacgcgtc gcgtcggttg atcacagaga
     1081 ggctcatcag tagccgccga tcgcgcgaca catggctggg tcagcgggca ctgtggtcac
     1141 gcagcatcga cggcacggtg cgcaacagga tggacaggtc accgaccgtg ctgcgggtgc
     1201 gcacgtaggc cacgtccaga tgcagcatct ccagggtgcc gaccgtggag cgaccgctga
     1261 cctgccacag tccggtgatc ccggggcgta cggagaaccg cggctggaac tgcgcaggga
     1321 acatgtgggc ttcccactcc aggcatggcc gagggcctac cagggacatg tcgccgaaca
     1381 gcacattgag cagctgaggc agctcgtcga ggctggtctt gcgcaggaac gctccgatcc
     1441 cggtgacccg ggggtcgccg tcgagcttgc agctgccgtt gaccaaggtg tcctcgccgc
     1501 agagctcagc ggtgatcagc tcccgcagca tctcatcccc gacgccggtg cgcatggtgc
     1561 ggaacttgta catggtgaag gtctcgccgc ggtagccgat ccgctgctgc tggaacagcg
     1621 cgggaccctt gctggtcagc cggatcacga gaccgatgat cagcatcggt atcgctagca
     1681 cggtcaacgc aacgatcacc acggtcaagt cgagggcgcg accgagggct aatccccagg
     1741 tcggtgtcgg tctggcagac gagatcgcgt gcgggttgct tagatacttt
//
LOCUS       DASVXZ010000563         4859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1227141, whole genome shotgun sequence.
ACCESSION   DASVXZ010000563 DASVXZ010000000
VERSION     DASVXZ010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4859
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227141"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VF788_11725"
     CDS             complement(<1..278)
                     /locus_tag="VF788_11725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934836.1"
                     /translation="MKLDLALRELHRSENNLAADLLKISDRHKVEHEIHYVARDLARW
                     SQQHVHELAEIGQRYGLNLKDDPEEDSGLLATVRSKASELIGRRPETGL"
     gene            complement(275..2734)
                     /locus_tag="VF788_11730"
     CDS             complement(275..2734)
                     /locus_tag="VF788_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015102481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase"
                     /protein_id="HEX8934837.1"
                     /translation="MSLCDRIAQPWGMRTPYGPGETWPTRVDTYLADGVSAEQVDRWV
                     QTASVLHSNGDAMDIAVSGGRIVGIRGREIDRVNRGRLDTKDLFGWQANAASDRLTTP
                     LIRDGNRLVETDWQTAMDRIVQRSKELLRKQGPSALGFYTTGQLFLEEYYTLAVIAHG
                     AIGTNHVDGNTRLCTATAAEALKDSFACDGQPGSYTDVDHADVIALYGHNVAETQTVL
                     WMRMLDRLAGPNPPALICVDPRQTPAARAATVHLAPVPGTNLALMNGLLHEIIRNDWV
                     DHDYVTAHTVGYDELTNQIEPYSPERVAEICQIPAEQIREAARILGTADRLLSTVLQG
                     FYQSHQATAAAVQVNNVHIIRGMLGKPGAGILQMNGQPTAENTRECGADGDLPGFRNW
                     ANDSHITELARIWNIEPMQIPHYAPPTHLMQMMRYVEQGTIRFLWVNGTNPAVSLPEL
                     RRIRSILSQQRLFLVVQDIFLTETAALADVVLPAATWGEKTGTFTNADRTVHLSDKAV
                     EPPGQARPDLDIFLDYARRMNFRDKDGAPLPPWRDAESAFEAWKQCSAGRPCDYTGIS
                     YAKLRGGSGIQWPCTTEHPDGTERLYVDGQFWSTPDYCESYGKDLITGAPLEPTEYRA
                     LNPAGKAVLKAAEFLPSHESPTDEFPWYLITGRTLFHFHTRTKTGRAPQLQAAAPEVW
                     VEMSANDATAQGINEGDVVEVSTARGTLRARVRISGIRNGVLFVPFHYGYWDVTGNEG
                     TDHHRAANELTITDWDPVSKQPIFKTAAARINQVSTGEGDAAPAPTNTASRPVSADVP
                     ATHGGPAATTEEHLTITGDLQ"
     gene            complement(2721..3293)
                     /locus_tag="VF788_11735"
     CDS             complement(2721..3293)
                     /locus_tag="VF788_11735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934838.1"
                     /translation="MPTVIRFAALRLSYAALLLAAPDLVIRLSTGHPANRITRAVVRL
                     LGGRHLIQGILTGSRPSTPMLALGAATDLAHALSMLALAALNQRRRRAELTDAAVAAT
                     LAISGAILATRAQPSLLPTATIRPFASTDESSSPISAYHRHRRSIDSFCHSLFSQTPS
                     LLIVASQDWAGVYRGTPPPYRTFGGLDVIV"
     gene            complement(3332..4270)
                     /locus_tag="VF788_11740"
     CDS             complement(3332..4270)
                     /locus_tag="VF788_11740"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEX8934839.1"
                     /translation="MNAVPSGAQFEIVAGPHRATLVEVGGGIRTLICDRHAVLDGYPR
                     QEMRTGARGTRLIPWPNRLADGVYDFRGTRYQVALTEPEAHNAIHSFLRWRNWTLRER
                     ATDRVVLGTVLHPLPGYPFTLDISIDYSVLNATGGDRQTGLAVATTATNLGDTPCPYA
                     TGHHPYLTAGTEFINECTLTLDAHTWLPTDDRGLPTGTESVKDTPDDFRTGALIGNTV
                     IDYAFTGLTRDGNGLAWVYLTAPDGRCTRLWADEHYRFIELYTGDTQPPNKQRRGLGL
                     EPMTCASNDFQAGNNLIILDPGQSITTRWGLHPHQP"
     gene            complement(4267..>4859)
                     /locus_tag="VF788_11745"
     CDS             complement(4267..>4859)
                     /locus_tag="VF788_11745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEX8934840.1"
                     /translation="WELDNQRWAHSRLICAAGLRTMATSGASTADAAAWSTLADTIIA
                     DTAADCLHPTGRWQRAPGDPRIDAALLLPALRGALPGSDPRSVATYNAVQEELSDDGY
                     VYRFRQDPRPLQEAEGAFLLCGFLMALAAHQQGDAIAAARRFERNRAACGPPGLFSEE
                     YDVSQRQLRGNLPQAFVHALMLETSARLAAPPEVLS"
BASE COUNT          756 a         1408 c         1745 g          950 t
ORIGIN      
        1 aggcccgttt ccgggcggcg accgatgagc tcgctggcct tgctgcgcac ggtggccagc
       61 agaccggagt cctcctcggg gtcatccttg aggttcaggc cgtagcgctg cccgatctcg
      121 gcgagctcgt gcacgtgttg ctgagaccag cgggccaggt cgcgggctac gtaatggatc
      181 tcgtgttcga ccttgtgccg gtcggagatc ttcaacaggt cggcggctag gttgttctct
      241 gagcggtgca gttcgcgtag tgcgaggtcg agcttcactg caggtctccg gtgatggtca
      301 ggtgttcctc tgtggtggcg gcgggaccgc cgtgggtggc tgggacgtcg gcgctgacgg
      361 gccgtgatgc ggtgttcgtc ggggccggcg cggcgtcgcc ctctccggtg cttacctggt
      421 tgatccgtgc agcggccgtc ttgaagatcg gttgcttgga tacggggtcc cagtcggtga
      481 tggtgagctc gttggcggcg cggtggtgat cggtgccctc attaccggtg acatcccagt
      541 agccgtagtg aaacggcacg aatagaaccc cattgcggat gccgctgatc cgcactcgag
      601 cgcggagcgt gccacgggca gtgctgacct cgaccacgtc accctcattg atgccttggg
      661 cagtcgcgtc gttcgctgac atctccaccc acacctcggg tgccgctgcc tgcaactgtg
      721 gcgcccgtcc ggttttggtc ctggtgtgga agtggaacag cgtccggccg gtgattaggt
      781 accacggaaa ctcgtcggtg ggtgactcat gcgacggcag gaactcggcc gccttaagca
      841 ccgccttgcc ggcagggttg agggctcggt actcggtggg ctccagcgga gcgccggtga
      901 tcaggtcctt gccgtagctc tcgcagtagt cgggtgtgct ccagaattgc ccgtcgacgt
      961 agagccgttc agttccatcg ggatgctctg tggtgcacgg ccattgaatt ccgctaccgc
     1021 cgcgcagctt cgcatagctt atcccggtgt agtcgcaggg acggcctgcg ctgcactgtt
     1081 tccatgcctc gaacgccgac tcggcgtcgc gccagggcgg cagcggcgct ccgtccttat
     1141 cgcggaagtt cattcgccgc gcgtagtcga ggaagatatc gagatcgggg cgagcctggc
     1201 caggcggctc gacagccttg tcggagaggt gcacggtgcg atcggcgttg gtgaaggtgc
     1261 ccgtcttctc tccccacgtc gctgcgggca gcaccacgtc ggcaagcgcg gctgtctcgg
     1321 tgagaaagat gtcttgcacg accaggaaca gtcgctgctg ggacaggatc gatcggattc
     1381 ggcgtagctc tggcagggac accgccgggt tggtgccgtt cacccagagg aaccggatcg
     1441 tcccctgctc cacatacctc atcatctgca tcaggtgagt gggcggcgca tagtgcggga
     1501 tctgcatcgg ctcgatgttc cagatcctgg ccagctcggt gatatgagag tcgttggccc
     1561 agttccggaa gccgggcaga tcgccgtcgg cgccgcactc ccgggtgttt tccgcggtgg
     1621 gttgcccatt catctgcagg atgcccgcac ccggtttgcc gagcattcca cgaatgatgt
     1681 ggacattgtt gacctgcacg gccgccgcgg tggcctgatg ggattggtag aagccctgca
     1741 gcactgtgga cagcagccgg tccgcggtgc ccaggatgcg ggccgcctca cggatctgtt
     1801 ccgccggtat ttggcaaatc tctgcgaccc gctcagggga atagggctcg atctggttag
     1861 tcagctcgtc gtagccgacc gtgtgcgcgg tgacgtagtc gtggtccacc caatcgttgc
     1921 ggatgatctc atgcagcagc ccgttcatca gggcgaggtt agtgcccgga accggtgcca
     1981 aatggaccgt cgccgcccga gcagccggcg tctgccgagg atccacacag atcaacgcgg
     2041 gcgggttcgg tccggccaac cgatccagca tgcgcatcca taacacggtc tgcgtctcgg
     2101 ccacgttgtg gccgtacagc gcgatcacgt cggcgtggtc gacgtcggtg taagagccgg
     2161 gttggccgtc gcaggcaaac gagtccttca gcgcttcggc ggcggtcgcg gtgcacagcc
     2221 gggtattgcc gtcgacgtgg ttggtgccga tcgccccgtg tgcgatcact gccagcgtgt
     2281 agtactcctc caggaacagc tgcccggtgg tgtagaagcc cagcgcgctc gggccttgtt
     2341 tccggagcag ttccttgctg cgctgcacta tccggtccat tgcggtttgc cagtcagttt
     2401 ccaccagccg gttgccgtct cggatcagcg gagtagtgag gcggtctgag gcggcattgg
     2461 cctgccaccc aaacaggtcc ttggtatcaa gacgaccgcg gttcacccgg tcgatttcac
     2521 gaccacggat ccccactatc cgaccgccgg acacggcgat gtccattgcg tctccgttgg
     2581 aatgcagaac ggaagcggtc tgcacccatc ggtcgacctg ctcggcgctg acgccgtcgg
     2641 ctagataggt gtcgacccgg gtcggccagg tctcaccggg cccataggga gtacgcattc
     2701 cccatggctg ggcaatccga tcacacaatg acatcaagac ccccgaatgt ccggtacggt
     2761 ggtggcgtac cccgataaac accagcccaa tcctgcgaag caacgatcag caaactaggc
     2821 gtttgtgaga aaagagagtg acaaaaactg tctatgctgc ggcggtgtcg gtggtaggcc
     2881 gagatcggag aagaggattc gtctgttgat gcaaagggcc ttatagtcgc ggtcggcaaa
     2941 aggctgggct gagcgcgggt ggccaggatt gccccgctga tggcgagtgt ggcggcgacc
     3001 gcggcgtcgg ttagttcggc gcgtcgccgt cgctggttga gcgccgcgag ggcgagcatg
     3061 gacagtgcgt gtgcgaggtc ggttgccgct cctagagcca gcataggggt ggagggtctg
     3121 ctgccggtca gaattccttg gatgaggtgg cgtccgccca gtaggcggac taccgcacgg
     3181 gtgatccggt tggcggggtg tccagtggag agccggatta ccaggtctgg ggctgctagc
     3241 agcaaggcgg catagctcag gcgtagggcg gcgaagcgaa tgaccgtcgg catcgtcttg
     3301 ggctgcctcc ttttcgttgt gtctggcacg gtcatggttg gtgggggtgt aggccccatc
     3361 gggtggtgat cgactgtccc ggatcgagaa tgatcaggtt gttgccggcc tggaaatcgt
     3421 tggaggcaca ggtcatcggc tcgaggccca gcccgcggcg ttgcttgttc ggtggttggg
     3481 tgtcgccggt gtagagctcg atgaaccggt agtgctcatc tgcccataac cgggtgcagc
     3541 ggccgtcggg agcggtcagg tacacccagg ccagtccgtt gccgtcgcgg gtcaggccgg
     3601 tgaaggcgta gtcgatgacg gtgttgccga tcagcgctcc ggtacggaag tcatcggggg
     3661 tgtccttgac ggattcggtg cccgtgggca gcccgcgatc atcggtgggt agccacgtgt
     3721 gggcgtccag ggtcagtgtg cactcgttga tgaattcggt gccggcggtg aggtaggggt
     3781 ggtgtccggt ggcgtacggg catggtgtgt cgcccaggtt ggtggcggtg gtggccacag
     3841 ccagcccggt ttgtctgtca ccgccagtcg cgttcaggac ggagtagtcg atcgagatgt
     3901 caagtgtgaa ggggtaaccc ggcaggggat gcagcacggt gccgagcacg acccggtcag
     3961 tggcgcgttc gcgaagggtc cagttgcgcc agcgcagaaa gctgtggatg gcgttgtgcg
     4021 cttctggttc ggtcaaggcg acctggtatc gggtgccgcg gaagtcatag acgccgtcgg
     4081 cgagccggtt gggccagggg atcagccggg taccgcgcgc cccggtgcgc atttcctggc
     4141 gggggtagcc gtccaggaca gcgtgcctgt cgcagatgag ggtgcggata ccgccgccga
     4201 cctcgaccag cgttgcgcgg tggggcccgg cgacaatctc gaattgcgca ccagatggca
     4261 ccgcgttcat gagaggacct ccggtggggc ggcgagtcga gcggaggttt ccaacatcag
     4321 ggcgtgcacg aaggcttggg gcaggttgcc gcgcaactgg cgttggctca cgtcgtattc
     4381 ctcggaaaac aatcccggag gaccgcaggc cgcacggttg cgctcgaatc ggcgggccgc
     4441 cgctatggca tctccctgtt ggtgtgcggc cagcgccatc aggaagccgc agagcaggaa
     4501 ggctccttcg gcctcctgaa gtggtcgggg gtcctggcga aaccggtaga cgtagccgtc
     4561 gtcgctgagc tcttcctgca cggcgttgta ggtggccacg gagcgtggat cgctgccggg
     4621 cagcgcgccg cggagggcgg ggagcagcag cgccgcgtcg atccgggggt cacctggggc
     4681 gcgctgccaa cggcccgtcg ggtgcaggca gtcagcggcg gtgtcggcga tgatggtgtc
     4741 ggctaacgtg ctccaggcgg cggcgtcggc ggtggaggcg ccgctggtag ccatggtgcg
     4801 cagtccggcg gcgcagatca gtcgggaatg cgcccagcgt tggttatcaa gctcccaga
//
LOCUS       DASVXZ010000564         4278 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_747515, whole genome shotgun sequence.
ACCESSION   DASVXZ010000564 DASVXZ010000000
VERSION     DASVXZ010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4278
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_747515"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2320
                     /locus_tag="VF788_11750"
     CDS             <1..2320
                     /locus_tag="VF788_11750"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEX8934841.1"
                     /translation="QAGETVNSVSSNLVQSQVPVVSTITDKDGVPIAYVFDQNRFNTP
                     AKNIADTMKAAIIAIEDRRFFEHNGVDWRGTARALMTNLSSSGSALEGQGASTLTMQY
                     IKNYMLYAVAQNDAERAAAVESTPARKLREVRVALQLEKQLSKDEILARYLDIVFFGH
                     NAYGVASAARTYFNTTPDRLTISQAALLAGMVRSTSFYDPVENPVQALARRNVVIDEM
                     TNVGSITPTQAEAAKAEPLGVQRPLTGLTNGCVGAGPADGFYCQYALDYLATVGFPED
                     KLRRGGYLIRTNLDRRASDIAKRAATAEVPTQSQGIANAMAIVEPGRDRHPVRALVAN
                     RDYGLDADAGQTSYALPSLVQGFGAGSIYKIFTSAALLERGMGIQNPVPVMDAYTSRV
                     FRDNGGPYTVTNAGKYRNGSVPLQTALAISPNTTFVALEDRIGKIDPVVDMAYRLGMR
                     QSLNFKDSQGRTIADAVKKEKRGSYTLGAEPTSPLDLANVGATLMSGGRWCPPTPIDA
                     VLDRNGRPVVVPEPPCEQVVPEGLANSLAVGLSKDDQPSGTSFAAAQAAHWTRPLLGK
                     TGTTQNNRSAGFLGATPQYSGAVLVWPDGPRPSGICDSDPPRLCSNGDIFGGKVPART
                     WFDTMGPLHEGLPVMPLPPTEPRYVTGAGPNVPNVVGQGENTAQLTLERAGFRVKRVV
                     AASDQPPGTVASVAPTTAQPGDEITIGVSDGTARPKYGSRTPPSAAPYRPPHGPDQQN
                     PNGASAADPNDMPDPGPPDRRDRRDRRGHQGG"
     gene            complement(2365..2835)
                     /locus_tag="VF788_11755"
     CDS             complement(2365..2835)
                     /locus_tag="VF788_11755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEX8934842.1"
                     /translation="MAELKDRLRADLSTAMKSRDNVTVGTLRMALTAITTEEVSGSAA
                     RELSDDEVLAVLAREAKKRREAADVFATAGREELATRERAEGEVLARYLPQQLSDDEL
                     TSLIAESIDDVAGQLGKRPSLGQLGLVMKAAKAKTSGRADGKRLAAAVMAALQP"
     gene            2936..3871
                     /locus_tag="VF788_11760"
     CDS             2936..3871
                     /locus_tag="VF788_11760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX8934843.1"
                     /translation="MNHWGRAVVSAAALAVAGSTYAAGVEARRWTLRQATLPVLPDWA
                     PPVRILHISDLHMTPGQRSKQRWVASLADLQPDLVVNTGDNLAHPQAVPAVLRALQPL
                     MTFPGVFVFGNNDYYGPKPKNPAHYLLRTGKKIRGAPLPWSDLRAAFVEHGWVDLTNA
                     RHQLTVAGRRVAAAGVDDPHLRRDRYQRITGRADPAADLRLGLTHSPEPRVLDAFATD
                     GYDLVLAGHTHGGQLRLPGYGAIVTNCGLDRSRARGVSRWGVHTWLHVSAGLGTSPYA
                     PVRFACPPEASLLTLVPRNSDVTVPASAWHAAGVG"
     gene            3889..3962
                     /locus_tag="VF788_11765"
     tRNA            3889..3962
                     /locus_tag="VF788_11765"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3923..3925,aa:Pro,seq:cgg)
     gene            complement(3980..>4278)
                     /locus_tag="VF788_11770"
     CDS             complement(3980..>4278)
                     /locus_tag="VF788_11770"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8934844.1"
                     /translation="QFPTAREATEHLVKHAHGGLRFHDLRHSYATWLVSAGVPINDVS
                     AVMGHEQTSTTLDRYTHPSQDRDQRVKAVFADFLLTPTPEADSETEQEPTDEDS"
BASE COUNT          737 a         1483 c         1383 g          675 t
ORIGIN      
        1 ccaagccggc gagacggtca acagtgtctc gtccaacctg gtccagtctc aggtgccagt
       61 ggtcagcacg atcaccgaca aggatggcgt accgatcgcc tacgtcttcg atcagaaccg
      121 gttcaacacc cccgcgaaga acatcgctga cacgatgaag gcggcgatca tcgccatcga
      181 ggaccgccgg ttcttcgaac acaacggggt cgactggcgg ggcactgcgc gagccctgat
      241 gaccaacctg tcttccagcg gcagcgcatt ggagggccag ggcgcctcga cactgacgat
      301 gcagtacatc aagaactaca tgctctacgc ggtcgcgcag aatgacgccg aacgagccgc
      361 agccgtggaa agcacccccg cccgcaagct gcgcgaggtc cgggtggccc tgcaactgga
      421 aaaacagctg tccaaggacg agatcctggc gcggtatctc gacatcgtct tcttcggcca
      481 caacgcctac ggagtcgcct cggcagcgcg gacctacttc aacaccacgc cggaccggct
      541 caccatctcc caggccgcgc tgctcgccgg gatggtgcgc tcaaccagct tctacgaccc
      601 ggtggaaaat ccggtgcagg cgctggcccg gcgcaatgtc gtgatcgatg agatgaccaa
      661 cgtcggctcg ataaccccca ctcaggccga ggcggccaag gccgagccac tgggcgtcca
      721 gcgcccgctc accgggctga ccaacggatg cgtcggcgcc gggcccgccg atggtttcta
      781 ttgccagtac gccttggact acctcgccac cgtgggcttc ccggaggaca agctgcgccg
      841 cggcgggtac ctgatccgca ccaacctcga ccggcgggcc agcgacatag ccaagcgtgc
      901 ggcaaccgct gaggtgccaa cccagtcgca ggggatcgcc aacgcgatgg ccatcgtgga
      961 gcccggccgc gaccggcatc cggtgcgggc gctggtggcc aaccgggact acgggttgga
     1021 tgccgacgca ggccagacct cctacgcgct gccctcgctg gtgcaaggtt tcggcgccgg
     1081 atcgatctac aagatcttca cctcggcggc gttgctggag cgggggatgg ggatccagaa
     1141 cccggtaccg gtgatggacg cctacacctc acgggttttc cgggacaacg gtggcccgta
     1201 cacggtcacc aacgccggca agtaccgcaa cgggtcggtc cccctgcaga cagccctggc
     1261 gatctccccg aacaccacgt tcgtcgcctt ggaggaccgg atcgggaaga ttgacccagt
     1321 ggtggacatg gcctaccggc tgggcatgcg gcaaagcctg aacttcaagg actcccaggg
     1381 ccgcacgatc gctgacgcgg tcaagaagga gaagcggggc tcctacacac tgggagccga
     1441 gcccaccagt ccattggacc ttgccaacgt cggggccacc ctgatgagcg gcgggagatg
     1501 gtgcccgccc accccgatcg atgcggtgct ggatcgcaac ggtcgcccgg tggtggtccc
     1561 tgagccgccc tgcgagcagg tcgtcccgga aggtttggcg aacagcttgg cggtggggct
     1621 gagcaaggac gatcagccca gtggcacctc ctttgccgcc gcccaagcgg cgcactggac
     1681 ccgtccgctg ctcggcaaga ccggcaccac ccagaacaac cgctcagccg gcttcctcgg
     1741 agcgacgccg cagtactccg gtgcagtact ggtatggccc gacgggcctc ggccgagcgg
     1801 aatctgcgac tccgacccac cccggctatg cagcaacggc gatatcttcg gtggcaaggt
     1861 cccggcgcgt acgtggttcg acaccatggg cccgctgcat gaaggccttc ccgtgatgcc
     1921 gctaccaccc accgaaccgc gctacgtcac cggcgccgga cccaatgtcc ccaacgtggt
     1981 ggggcagggc gagaacaccg cccagctgac cctggagcgg gcaggattcc gggtgaaacg
     2041 ggtcgtggcg gcctcggatc agccgccggg caccgtcgcg tccgtagcgc ccaccaccgc
     2101 ccagcccgga gacgagatca ccatcggcgt cagcgacggg acggctcggc cgaagtacgg
     2161 gtcgagaact cccccatccg cagcgcccta ccggccccca cacggaccag accagcagaa
     2221 tcccaacggt gcatcggcgg cggaccccaa cgacatgccc gatcccggcc cccccgaccg
     2281 tcgagaccgc cgagatcgcc gaggtcacca gggcggttag cgctggctct cagctcggaa
     2341 cagggtcgtc cgcttgctgc ccatctaggg ttgcagtgca gccataacgg cagcggctag
     2401 ccgcttgcca tcggcgcggc ccgaggtctt ggctttcgcg gccttcatca ccagaccgag
     2461 ctggccgagg ctagggcgct tgccaagttg cccggcgacg tcgtcgatcg attcagctat
     2521 cagggatgtg agctcatcgt cactgagttg ctggggtaga taccgggcga gcacttcgcc
     2581 ctcggcacgt tcccgggtag ccagctcctc gcgcccggcc gtcgcgaaga cgtcggcggc
     2641 ttcacgacgc ttcttcgcct ctcgagccag caccgccagc acctcgtcat cggagagctc
     2701 ccgagccgct gagccggaga cctcctcggt ggtgattgcc gtcagcgcca tccggagggt
     2761 cccaaccgtg acgttgtctc gggacttcat cgccgtggac aggtcggcgc gcagccgatc
     2821 cttcagctct gccatttcgc ggagactacg ccgtgtgagt ggcgtggcgt gccggacacg
     2881 tacacgggcg cgcaatgcca ctcatgcgct gcccgagaca gctaggctcg gccgcatgaa
     2941 ccactgggga cgtgccgtgg tcagtgcagc cgcgctggct gtcgctggga gtacctatgc
     3001 cgctggcgtg gaggcccgcc gctggacact gcggcaggcc accttgccgg tgctcccgga
     3061 ctgggcgcct ccggtgcgca tcctgcacat ctccgacctg cacatgactc cgggtcagcg
     3121 ctccaaacag cgctgggtgg ccagcttggc cgacctacag cccgatctcg tggtgaacac
     3181 cggtgacaat ctggcccacc cgcaggcggt cccggccgtg ttgcgggcgt tgcagccgct
     3241 gatgaccttt cccggggtgt tcgtcttcgg caacaacgac tactacggcc ccaaaccgaa
     3301 aaatcccgct cactacctgc tgcgcaccgg caagaagatc aggggcgcgc cgctgccatg
     3361 gtcggatctg cgcgcggcct tcgtcgagca cggttgggtt gacctgacca acgcccgcca
     3421 ccaactgact gtggcaggcc ggcgggtcgc cgccgccggg gtggacgacc cgcacctgcg
     3481 ccgggaccgc taccagcgaa tcaccggacg ggccgatccc gccgccgacc tccggctggg
     3541 tctgacgcac tccccggagc cccgagtgct ggacgctttc gctacggacg gctacgacct
     3601 cgtgctcgcc ggtcacaccc acggtggcca gctgcggcta ccgggctacg gcgcgattgt
     3661 caccaactgc gggctggacc gatcccgcgc ccgcggtgtg tcccgttggg gcgtgcacac
     3721 ctggcttcat gtctcagcag gcctgggcac ctctccgtac gcgccggtgc gcttcgcctg
     3781 ccctccagaa gcgagcctgc tcactttggt gccccgcaac agcgatgtca ccgtgccagc
     3841 cagcgcatgg cacgccgcgg gcgtcggata gagtaggcga cgtccatccg gggtgtggcg
     3901 cagcttggta gcgcgcttcg ttcgggacga agaggccgtg ggttcaaatc ccgccacccc
     3961 gacacgctga aatgccaggt caggagtcct catcggtggg ctcctgttct gtttctgagt
     4021 ctgcttcggg cgtcggagtc agcagaaagt cagcaaatac agctttgacc cgctggtctc
     4081 tgtcttgcga ggggtgggtg tagcggtcga gcgtggtcga ggtttgctca tggcccatga
     4141 ccgcggacac gtcattgatt ggcacgccgg ccgagaccaa ccaggtggcg taggagtggc
     4201 gaagatcatg gaaccggagc ccgccgtggg cgtgcttgac gagatgttca gtcgcttccc
     4261 gggcggtggg gaactgct
//
LOCUS       DASVXZ010000565         6946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_510129, whole genome shotgun sequence.
ACCESSION   DASVXZ010000565 DASVXZ010000000
VERSION     DASVXZ010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6946
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510129"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..865
                     /locus_tag="VF788_11775"
                     /pseudo
     CDS             48..865
                     /locus_tag="VF788_11775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227706.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FtsK/SpoIIIE domain-containing protein"
     gene            complement(1051..1127)
                     /locus_tag="VF788_11780"
     tRNA            complement(1051..1127)
                     /locus_tag="VF788_11780"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1091..1093),aa:Met,seq:cat)
     gene            complement(1186..4110)
                     /locus_tag="VF788_11785"
     CDS             complement(1186..4110)
                     /locus_tag="VF788_11785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HEX8934845.1"
                     /translation="MANRPPVGVPALSRRARIMIAVGAAALVILIVGSRLIDTYVDWL
                     WFGEVNFRAVFSTVLVTRLLQFLIVGLVVGGVLALNIVIAYRTRPVFVPVVGPDDPVA
                     RYRTAILTRLRLVGVGVPLLVGFIAGLSALGDWKTVQTFLHGVDFGVTDPLFHRDVSF
                     YAFELPFYRELLGWAFVVVVISFIGALITHYVFGGLRLAGRGGQLSGPARVQLAVLAG
                     VFVLLKAVGYFLDRYGLLFSRRNPLFTGSSYTDLNAVLPAKIILACIAVICAVAFFVG
                     AVLRNLQLPAIAIALLLLSSILVGAAWPTVLEQFVVRPNANEREAPSIQRNIIATREA
                     YGITDRQVGYSQYSGRSDVSPIDVRADNATIPNIRLLDPSVLSQTFTQLQQRENFYGF
                     PDKLDIDRYTVGGKKQDYIVAVRELESASLAENQRTWINQHLTFTHGNGFVAAPANTV
                     NSALADAGSGEGGYPVFTVSDTSRQGDIPVQQPRIYFGELIDDYAIVGGNPGANPREF
                     DGRPENYTYQGKGGVKLGSWTSRLLFASYYGERNILFNQAIGPDSKIIYNQHPRDRVE
                     KVAPWLTVDGDPYPAVINGRIQWILDGYTTLDNYPYAQRTLLGRATTDSLTGVVRLPD
                     EEISYIRNSVKATVDAYDGTVTLYAVDETDPVLRTWMNVFPGTVQPSTAISDELRQHF
                     RYPEDLFKVQREMLARYHVNNPSVFFTNDDFWNVPADPTLNQPSVDQPPYYVLAGPPN
                     GSGPAEFQLTSALVSLRRPFLAAYISVGCEPQNYGKIRVLELPGESQTLGPEQIQNRF
                     VSSAEVSKELNLLRQSETDVRFGNLLTLPVGGGLLYVEPVYIERANRQATFPQLNRVL
                     VAYGDRIGYDPTLRGALNQVFGAGAGDATVSPGQQTGVPGQSGVQPPAAASAGGANQD
                     MRQAVTDIGDALKRLRAAQSTGDFKEQGKALADLDAASKRFDAASKAAGAAAPAPAGG
                     GG"
     gene            4275..4820
                     /locus_tag="VF788_11790"
     CDS             4275..4820
                     /locus_tag="VF788_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPA1309 family protein"
                     /protein_id="HEX8934846.1"
                     /translation="MSTPSPQPSALSQALPTTAREVEEFVATAGWDQPPQLFALVATA
                     TLLASQPELADQLDGQVPLTPVAQDALPEGELDAALAGIEWPDSVAGCALAQEIVVLP
                     PTAEADLGELPDDPAQARRAAAEHPQRREGRLVAAVLRDGFGACVLRLRAADTDQLCD
                     ELVEDPQLAPNLLRALLATLR"
     gene            complement(4828..5850)
                     /locus_tag="VF788_11795"
     CDS             complement(4828..5850)
                     /locus_tag="VF788_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEX8934847.1"
                     /translation="MSRRTWTLLVSLSLATALGLLGALATVPYVALRPGPTFDTLSVV
                     AGKTVVDIKGTQTYPTSGHLNMTTVSVVDNVTLYTALALWASGHSALVPRDEIFPPAL
                     SEQQVEKQNQQMFRDSESNAKAAALRYLGYPTTVVAGQVVAGGAASGKLVAGDRLLAI
                     DGRELRTAQQTVDQLAGSHPGQLVQLRFQRGGSPPQEVAITLGTGAQPGRGYLGIGLT
                     ERPEVPFTITITLADVGGPSAGLMFALAIVDKLTPGALTGNTFVAGTGEIATDGQVGP
                     IGGIPLKMLRAREAGASVFMVPTENCAEAAQRAPDGLRLVRVSTLTDAVHALDEIRAG
                     QQPPHC"
     gene            5894..>6946
                     /locus_tag="VF788_11800"
     CDS             5894..>6946
                     /locus_tag="VF788_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HEX8934848.1"
                     /translation="MSDVPFGFGSGDPRDPDRRKPEDAASGGNPDPANPFAAFGAGGF
                     DVGALGQMLTQLGQMISQGAAGGGGPVNYDLAKQMALQKLSTTGLPSAQQATAVTDAV
                     HLAELWLDPVTALPTGAHSTAAWAPRDWVEVTLPTWRRLCDPVARRMAGSWIDALPDE
                     VRQAAGPLVAMVEQMGGMAFGSQLGSALAQLGGEVLTSTDIGLPLGPLGVAGLLPAAI
                     EQFAAGLERKSSEVIVFLAAREAAHHRLFGHVPWLRQRLLGTVEQFAHGIRVDTDALQ
                     DLARQVDPTNPQSMEQLLSSGVLEQQHSPEQKAALRRLETLLALVEGWVDVVVAEALG
                     ERLPGAEALRETLRRRR"
BASE COUNT         1197 a         2256 c         2314 g         1179 t
ORIGIN      
        1 ctcgccgacc cggtgagctg ccctgatctg gccggtgtgg tcgcggggtg ctcactgggt
       61 ggcggatggt tgagctgcag ccgtttgatg cgtgggcggg tcggcatctg cgggcttgat
      121 ggctgcgctg gacggtgtac gcaccgaagc tgcctgagtg gctgtacgcc tgcggcctgg
      181 gcatcaggca ggatgctgcg ccggtggtgc tggcgctcac tccgctgggg cgcgccctgg
      241 gtggcaaccg gcgccccatg gcggcccagt tgcccgaagt tctcggggcg cgttcgggcg
      301 cttcctggga cgaggtgcac atccggctgg tgcccggcca gaaacccgaa gacttcgacg
      361 acgccgcccg ggccctggcc tcagcccgag cagtggcacg ctgccaggtc cgggaactgt
      421 cgcccaatgt ggtctcgatc gatttccagc gccgcaacct gctcgccgac ccggtgagct
      481 gccctgatct ggccacgctg gccggtctgg atggcgggtc ggtggatctg cggcgggtct
      541 gggccgggcg caccgagtac ggccaggact ggcacatccc cctcgccggc ggccacacct
      601 gaccgccggt gtcaccggtg cgggcaaggg ctcggtgatg tggtgccctc tcgtgtcgat
      661 cgctccggcc gtccgggatg gatgggtgcg ggtgtcgggg attgacccca agggcatgga
      721 gttggcctac ggccggggca tcttctacca ctatgcggtc accggcaccg acgccctgac
      781 cgtgctcgat gagctcatcg gcgcgatgaa cgcccggaaa gccgcctttg ccgggtgggt
      841 gcgctcagtg ccgatcagcc cggagaccta catgcacggc gaccttgaag ccgaccgtga
      901 ggtagctcac gcactcgcat cggtcatcct cgccggccta cccggcgttg acgctgatga
      961 acaggggtga gcacggaggg ttcgttacca attccgttac cttgggcacg aaacaggccc
     1021 agtctccgaa gagaccgggc ctgttttccc tggtagcggg ggtaggattc gaacctacga
     1081 cctctgggtt atgagcccag cgagctaccg agctgctcca ccccgcgttg gtgaagccca
     1141 ccctacgcgc acagtgaccg gcggggcaaa tcgcgtggtc atcggtcaac caccgccgcc
     1201 ggctggggcc ggagcggcgg cacccgccgc cttagaggcc gcgtcgaagc gtttggaggc
     1261 cgcgtcgagg tcggccagcg ccttgccctg ctccttgaag tcgccggtac tttgtgccgc
     1321 tcgcaggcgc ttgagcgcat cgccaatgtc ggtgacggct tggcgcatgt cttgattggc
     1381 gccaccggcg ctggccgctg cgggtggctg gacaccactt tgaccaggca cgccggtctg
     1441 ctgcccgggc gagacagtcg catcaccggc acctgcaccg aagacctggt tgagcgcccc
     1501 gcgcagggtc gggtcgtacc cgatccgatc accataggca accagcactc ggttgagctg
     1561 tgggaacgtc gcttgccggt tcgctcgctc gatgtagacg ggttccacat agagcagacc
     1621 accaccgacc ggcagggtga gcaggttgcc gaagcgcacg tcggtctcgg actgccgcaa
     1681 caggttgagc tccttgctga cctcagcgga ggatacgaac ctgttctgaa tctgctctgg
     1741 gcccagcgtc tgagattcgc cgggcagctc aagcaccctg atcttgccgt agttctgtgg
     1801 ttcacatccc actgagatgt aggctgccag gaacggtcgg cgcagactga ccagggcgct
     1861 ggtgagctgg aactccgcag gacctgaccc gttcggcggg ccggccagca cataataggg
     1921 gggctggtcg acacttggct ggttcagtgt cggatcagcg ggaacgttcc agaaatcgtc
     1981 gttggtgaag aacaccgacg ggttgttgac gtgatagcga gcgagcatct cccgctgcac
     2041 cttgaacagg tcttccggat aacggaagtg ctgccgcaac tcatcgctga tggccgtact
     2101 gggctggacg gttcccggaa agacgttcat ccacgttcgt agcaccgggt ctgtctcatc
     2161 gaccgcatac agcgtcacgg tgccgtcata ggcgtccact gtggccttga ccgagttgcg
     2221 aatgtagctg atctcctcat ccggcagacg aaccacgccg gtcagcgagt cggtggtcgc
     2281 cctgcccagc agggtccgct gcgcgtatgg atagttgtcc aaagtcgtgt agccgtccag
     2341 gatccactgg atccgaccgt tgatcacggc gggatacggg tcaccatcca cggtgagcca
     2401 gggcgcgacc ttttccaccc gatccctcgg atgctgatta tagatgatct ttgaatcggg
     2461 tccgatcgcc tgattgaaca ggatgttgcg ctcgccgtag tacgaggcga atagcaaccg
     2521 gctcgtccaa ctccccagct ttaccccacc cttgccctga taggtgtagt tctccggacg
     2581 cccgtcgaac tcccgggggt tggccccggg gtttccgccg acgatcgcgt agtcatcgat
     2641 caactcacca aagtagatcc gcggctgctg caccgggata tcaccttgtc gtgaggtatc
     2701 cgagacggtg aagaccggat aaccaccctc ccccgaaccg gcgtccgcca gtgccgaatt
     2761 cacggtgttg gccggggctg cgacgaaacc gttaccgtgg gtgaaggtca gatgctggtt
     2821 gatccaggtg cgctggttct cggccagcga cgcagactct aactcccgta ctgcgacgat
     2881 gtagtcctgc tttttgccac cgaccgtgta acggtcgata tcgagcttgt ccgggaagcc
     2941 gtagaaattc tcccgctgct gcagctgagt gaaggtctgt gagagaacgc tcgggtccag
     3001 cagccggatg ttggggatag tggcgttgtc ggcgcgcacg tcaatcgggg acacatcact
     3061 acgtccggag tactgcgagt acccgacctg ccggtcggta atgccatagg cctcgcgggt
     3121 cgcgatgatg ttgcgctgga tggagggcgc ctcgcgctcg ttggcattgg ggcggaccac
     3181 gaactgctcc aggaccgtcg gccacgccgc accaaccagg atgctggaca gcaatagcaa
     3241 tgcaatggcg attgcaggca gttgtaggtt gcgcagcacc gcgccgacga agaaggcgac
     3301 cgcacagatc accgcgatgc acgccagaat tatcttggcc ggaagcaccg cattcagatc
     3361 ggtatagctg gacccggtga acaggggatt tcgccgcgag aacagcaacc cgtaccggtc
     3421 aaggaagtaa cccaccgcct tgagcaggac gaaaacaccg gccagcaccg cgagctggac
     3481 ccgagccggc ccggagagtt gaccaccgcg accagccagc cgcagcccac cgaacacgta
     3541 gtgggtgatc aacgccccga tgaaggagat caccacgacg acgaaggccc agcccaggag
     3601 ttcgcgataa aatggcagtt caaaggcgta gaagctgacg tcccggtgga acagggggtc
     3661 ggtcactccg aagtcgacac cgtgcaggaa ggtctgcacc gtcttccagt cacccaatgc
     3721 ggacaggccc gcgatgaacc cgaccagcag cggtacaccg acaccaacca gccgtaaccg
     3781 cgtcaggatc gcggtccggt accgcgccac cggatcatcc ggcccgacca ctggcacgaa
     3841 gaccggtcgg gtgcggtagg cgatcacaat gttgagcgcc agcacaccac cgaccaccaa
     3901 accgacgatc aagaattgca gcagtcgggt gaccagaaca gtggaaaata ccgctcggaa
     3961 gttcacctca ccgaaccaca accagtccac ataagtgtcg atcagccgcg acccgacgat
     4021 gaggatcacc agagcggcgg ctccgaccgc gatcatgatc cgggcgcgac gggacagggc
     4081 gggaactcca acggggggcc ggttggccac aggacacgct cctggcgacg acagcagtgc
     4141 ggtgcgggct cctcgggtga ccggtgccac gccgagttga atcctgcctg tccaactcta
     4201 cggagggccg cggggttccg cgtcgtggcc gcacccctac tgccggttcc caacgccggt
     4261 gcgaccatgg cggagtgagc acgccgtcac cgcaaccatc cgcgttgtcc caggccttgc
     4321 ctaccactgc gcgggaggtc gaggaattcg tcgcaaccgc cggatgggat cagccgccgc
     4381 agttgttcgc gctggttgcc acggccaccc tgctggccag ccaaccagaa ctggctgatc
     4441 agctggacgg gcaggtcccg ctcactccgg tagcccagga cgccctaccc gagggggaac
     4501 tcgacgcggc gctggcgggc atcgaatggc ctgactcggt ggccggctgc gcactggccc
     4561 aggagatcgt ggtacttccc ccgacggctg aagctgatct cggcgagcta cctgatgacc
     4621 ctgcgcaggc tcgccgcgcc gctgccgaac atccacagcg ccgggaaggc aggctggtgg
     4681 cggcggtact tcgagacggc ttcggcgcct gcgtcctgcg gttacgggca gctgacaccg
     4741 accagctgtg cgacgagctg gtggaggacc cgcaactggc cccgaacctg ctccgcgcac
     4801 tcctggcgac cttgcgctga gcaccgctca gcagtgcggt ggctgctgac cggctcggat
     4861 ctcatcaagt gcgtgtaccg catccgtcaa cgtgctcacc cgcacgagcc gcagaccgtc
     4921 gggagcgcgc tgcgccgcct cggcgcaatt ctccgtgggc accatgaaga ccgatgctcc
     4981 cgcctcccga gcccggagca tcttgagcgg gatgccacca atcgggccca cctgaccatc
     5041 ggtggcgatc tctccagtgc ccgccacgaa agtgttgccg gtcagcgcgc ctggcgtcag
     5101 cttgtccacg atggccagcg cgaacatcag ccccgccgaa gggcctccca catcagccag
     5161 ggtgatggta atggtgaaag gcacctcggg ccgctcggtc agcccgatac ccaggtagcc
     5221 gcgaccgggt tgggcgccgg tcccgagagt gatcgcgacc tcctgcggcg gggagccgcc
     5281 acgctggaaa cggagctgga caagctgccc ggggtggctg ccggcgagct ggtccactgt
     5341 ctgttgcgcc gtccgcagct cgcggccatc gatcgccagc agccggtctc cggcgaccag
     5401 cttgccgctc gcggcaccgc cagcgactac ctgaccggcc acgaccgtag tgggataacc
     5461 gagatagcgc agcgccgcag ccttggcgtt ggactctgag tcccggaaca tctgctggtt
     5521 ctgcttctcc acctgttgct cagacagcgc ggggggaaag atctcgtcgc gggggaccag
     5581 ggcgctgtgc ccggatgccc acagggcaag cgctgtatag agagtcacgt tgtcgaccac
     5641 cgacaccgtc gtcatgttga ggtgcccgct ggtgggatag gtctgggtgc ccttgatatc
     5701 caccaccgtc ttacctgcca ccacgctgag ggtgtcgaac gtcggtcccg gacggagcgc
     5761 gacgtagggc accgtcgcca atgcacccag caatcccaga gccgtcgcga ggctgaggct
     5821 gaccagcagg gtccaggtgc gacggctcac ggccgaacag cgtacgtgct tggggtccgc
     5881 gtaccgtaga gctatgagcg atgtgccctt cggcttcggt tccggcgacc ctcgggaccc
     5941 cgaccggagg aaacctgaag acgctgccag cggtggtaat cccgaccccg ccaatccctt
     6001 cgctgccttc ggagccggcg gcttcgatgt cggagccctg ggacaaatgc tcacccagct
     6061 aggtcagatg atcagccagg gtgcggccgg cggcggtggc ccggtgaact atgacctggc
     6121 caagcagatg gcgttgcaga aactgtccac gaccggcctg ccctccgcgc agcaggccac
     6181 ggcggtcacc gatgcggtgc acctggccga gttgtggctg gacccggtga cggcgctgcc
     6241 gacgggggca cacagcaccg ccgcctgggc gccgcgggat tgggtggagg ttaccctgcc
     6301 cacctggcga cggttgtgtg acccggtggc ccgccggatg gccggttcat ggatcgatgc
     6361 gctacccgac gaggtccgtc aggcggccgg tcctctggtg gcgatggtcg agcagatggg
     6421 tgggatggcg ttcggctcgc agctcggctc ggcgctggcg cagctcggtg gcgaggtgct
     6481 cacctccacc gatatcggcc ttcccctagg cccgctgggt gtggccgggt tgttgccggc
     6541 cgcgatcgag cagttcgctg ccgggttgga gcgcaagagc tccgaggtga tcgtttttct
     6601 ggcggcccgc gaggcggcgc accaccgcct gtttgggcac gtgccgtggt tgcgtcagcg
     6661 gctgctggga actgtcgagc agttcgcgca cggcatccga gtagacaccg acgcgctgca
     6721 ggacctcgcc cggcaggtcg acccgaccaa cccgcagagc atggagcagc tgctctcctc
     6781 tggtgttctc gagcaacagc acagtcccga gcaaaaggcc gccctgcgcc ggctggagac
     6841 gttgcttgcg ttggtcgagg gttgggtcga tgtcgtagtc gcggaggcgt tgggtgaacg
     6901 ccttcccggt gccgaggctc tccgggagac gcttcgccgg cggcgc
//
LOCUS       DASVXZ010000566         3400 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1106709, whole genome shotgun sequence.
ACCESSION   DASVXZ010000566 DASVXZ010000000
VERSION     DASVXZ010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106709"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..496)
                     /locus_tag="VF788_11805"
     CDS             complement(<1..496)
                     /locus_tag="VF788_11805"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8934849.1"
                     /translation="MSTTEQPASSSRATAQPFVYKNMIVLFAVVICCFTAWGIAADMT
                     APMVAAYKRIFTMSTFQASLVQFAYYGAYFALALPAAFINQRFGYKTGVLTGLGLASL
                     GALSFYPASKIMTYSMFLVALFALAAGLSILETSANPFVISMGPEANSTRRLNLAQAF
                     NPVGT"
     gene            complement(563..1582)
                     /locus_tag="VF788_11810"
     CDS             complement(563..1582)
                     /locus_tag="VF788_11810"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HEX8934850.1"
                     /translation="MPALLRSVRVVMSMFVVVGESLIDLVGQRGGRTFVAHPGGSPAN
                     VALGLARLGVPVMLMTRLGHDGLGEMISEHLRASGVRVNRGSPPAMSTSLAIATLAAG
                     VASYDFRIEWDMPALAPLPIEARCLHTGSLATVLPPGHVNVMDLVERERTRGRVTISY
                     DPNVRPALLGDATRARTGVERLVALSDVVKVSDEDLRWLYPDRPDELVAQDWLRSGPA
                     VVVVTRGGMGVYAVCAGVELHRPAVQIDLVDTVGAGDSFTSGLLDALHRADLIGGSRR
                     AAIAAIDESTLASVVDAAALTAAITCSRPGADPPTRPEVDALLAARNSASDAAGAGRG
                     HVPTI"
     gene            complement(1694..2542)
                     /locus_tag="VF788_11815"
     CDS             complement(1694..2542)
                     /locus_tag="VF788_11815"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8934851.1"
                     /translation="MAERTRQVRGMTVPTLLYGTAWKEERTAHVVEQALRMGFRGVDT
                     ANQRRHYFEAEAGRALRAELERGTLRREDVFVQTKFTFRTYQDHRLPYDPAAPIAHQV
                     AQSFDSSLSHLGVDVVDSYLLHAPSAPRGLSTADIEAWRAMEILCETGQARSIGVSNF
                     AADQLAALLRAARVRPAFVQNRCYASQGWDAGVRAICSREGVAYQGFSLLTANERVLR
                     GSLVDDIARRHQRAPAQVILCFALQLGMIALTGTTNTQHMADDLAVYEFKLTSADMNA
                     LEHAGS"
BASE COUNT          621 a         1124 c         1089 g          566 t
ORIGIN      
        1 tggtgcccac tgggttgaac gcctgcgcca gattgagccg gcgggtgctg ttggcctccg
       61 ggcccatcga gatgacgaat ggattcgccg acgtttccag aatcgacaac ccggcggcga
      121 gcgcgaacag cgccaccagg aacatggagt aggtcatgat tttgctggcc gggtagaagg
      181 acaaggctcc cagcgacgcc aggcccagcc cggtcaacac cccggtcttg tagccgaacc
      241 gctgattgat gaacgcggcc ggaagggcga gcgcgaagta ggcgccgtag taggcgaact
      301 gcaccagcga cgcctggaac gtgctcatcg tgaagatccg cttgtaggcc gccaccatgg
      361 gagcagtcat gtccgcggcg attccccatg cggtgaaaca gcagatcacg acggcgaaca
      421 acacgatcat gttcttgtag acgaacggct gagcggtcgc ccggctcgag ctcgccggct
      481 gctcggttgt gctcattgca gctgtccctt cgcggcccga cgtgccaggg tcacggcccg
      541 tggcggacgc cagtgatgga tctcagatgg tcggcacgtg gccacgtcca gcgcccgccg
      601 cgtcgctggc gctgttccgg gccgcgagca gcgcgtcgac ctcgggccgt gtcggtgggt
      661 cggcacccgg gcgggaacaa gtgatcgccg cggtcagggc cgccgcgtcc acgacgctgg
      721 ccagggtcga ttcgtcgatc gccgctattg ccgcgcgccg cgatccgccg atcaggtcgg
      781 cccggtgcag tgcatcgagt agccctgagg tgaaggaatc acccgcgccg acggtgtcca
      841 ccaggtcgat ctgcacggcc ggccggtgca actcaacgcc ggcgcagacg gcgtagaccc
      901 ccatcccacc gcgggtcacc accacaacgg ccggtcctga ccgcaaccag tcctgtgcca
      961 cgagctcatc gggccggtcg ggatagagcc accgaaggtc ttcgtcgctg accttgacaa
     1021 cgtctgaaag ggcaaccagg cgctcgacgc cggtccgcgc ccgggtcgca tcacccagca
     1081 gcgccggccg tacgttcggg tcgtaagaaa tcgtcacccg gcccctcgtg cgctcccgct
     1141 cgaccaggtc catgacgttg acatggccgg gcggcaggac tgtcgccaga gaaccggtgt
     1201 gcaggcagcg ggcctcgatc ggcagcggtg cgagcgcggg catgtcccat tcgatccgga
     1261 agtcgtacga cgcgaccccg gcagcgaggg tggcaatggc caggctggtc gacatggccg
     1321 gcggggaacc tcggttgaca cggacgccgc tggcccgcag atgctcggag atcatctccc
     1381 cgagcccgtc gtgcccgagg cgcgtcatga gcatcaccgg aacacccagc cgtgccagac
     1441 cgagcgcgac gttggccggg ctaccgcccg gatgggcaac gaacgtacga cctccgcgct
     1501 ggccgaccag gtcgataagg gactccccga cgacaacgaa catggacatc accacccgga
     1561 ccgagcgcag cagcgcaggc acaactcccc acgccggctg tcacgcccgc gcgtattcga
     1621 gtcgcccatg cctaagtaca tacccgctgg gccggccccg cgactccagt tctgtgccgt
     1681 atgtggcgtc ttgctaactt ccggcgtgct cgagtgcgtt catatcggca gacgtcagct
     1741 tgaactcgta cacggcgaga tcatcggcca tgtgctgggt attggttgtg ccagtgagtg
     1801 cgatcattcc cagctggagt gcaaaacaaa ggatcacctg cgccggggcc cgctggtggc
     1861 ggcgggcgat gtcgtcaacg agtgagcctc gaaggacgcg ttcgttggca gtgagtagtg
     1921 agaatccctg ataggccacg ccttcgcgag aacagatggc ccgcacgccc gcgtcccacc
     1981 cctgcgatgc gtaacagcgg ttctggacga atgccggccg cacccgcgct gcgcgaagca
     2041 gtgctgcaag ctgatcggct gcgaagttgc tcactcctat ggagcgcgcc tgcccggtct
     2101 cacagaggat ttccatggcg cgccaggctt caatatcagc cgtggacagt ccccgcggcg
     2161 cagagggagc gtgcaaaaga taagagtcca ccacatcgac accgaggtgt gacagcgagc
     2221 tatcgaagga ttgtgccacc tgatgcgcga tgggcgcggc cggatcatag ggcaaccggt
     2281 gatcctggta cgtccggaag gtgaacttgg tttgcacgaa gacgtcttcg cggcgcagcg
     2341 ttcctcgctc caactcagcc cgcagcgcgc gtccggcctc ggcttcgaag taatgccgac
     2401 gctggttggc ggtgtccacc ccgcggaatc ccatcctgag cgcctgctca acgacgtgtg
     2461 ctgttcgctc ttccttccag gccgtcccgt agagcagggt tggcaccgtc attccgcgga
     2521 cctgccgcgt ccgctctgcc attactcctc cggtcggccg cttcagctgc caacgaggag
     2581 catccgccag acatccatgg cgatccgcgt gggtagccac tacttgcttg cgccgtcagg
     2641 cgagcagctg cgggcggaca cactcgacac gcaacgactc agccgacgtg agctccgacg
     2701 gtagcaatac ccatccgccg cgccaccacg caggacaggc tcgcccgtaa gcctccgtca
     2761 ccggtcgtgg ctgccggtgg gcccggtagc agccacgcgg gaaagccccg tgacgctgcc
     2821 gggtcggggg tccaacagca tcacggggct ctacccgtcc ctatcgctgg tgcccacggc
     2881 aatgttgcag atgttccgcg gattcaccaa gtagatggac gcaacgtccg tgtaactacg
     2941 cagagcaacc agttccccgg ctcggcacct gcagaccggg tggtcggcac cggtgcgggt
     3001 cgactcgaac tcctcacctc ggttcgcctc gtgcagactg ccagtccact gattcgataa
     3061 tggtgcgaaa acagcgctga cgattgcgca atcagagcaa catcattcga cagggttcgt
     3121 cggagatttg cggctgccca atacgaaggc tcctgttcgg tagaaaaccg tgcgataccg
     3181 ttgacgctag gtcaataact gctcacgcaa cgcgagcgca ctacgctatt cgagcgttgt
     3241 agacgcttgg tggttacgcc gacgtggatg ctgccgatac tctttgcagc caccacttcg
     3301 acggtatcgc gcgcgccatg tatccgggga tggcccatcc gtcctatggc catgacgatg
     3361 tcgcgattgg tggcaggccg aagcgagctg cgggtcgtcg
//
LOCUS       DASVXZ010000567         4308 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1227877, whole genome shotgun sequence.
ACCESSION   DASVXZ010000567 DASVXZ010000000
VERSION     DASVXZ010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227877"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /locus_tag="VF788_11820"
     CDS             complement(<1..666)
                     /locus_tag="VF788_11820"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEX8934852.1"
                     /translation="MISGLRLAVSWLTILPVPTSGEVNRDMARRALYWSPVIGAVLGL
                     VAAGVLTALHALGTPSLLAGLVVVGMLAGLTRGMHLDGLADTADGLGCYGGPQRALDV
                     MRDGPCGPFGVVTLVLVLIAQATALGALAQTSRLITVILAMIAGRAAYSWCARRGMPA
                     ARPAGMGALVASSQPVAVPATWLAILLAGGLLAVPGRPWQGPLAVILASLLVITISAH
                     TRRR"
     gene            complement(663..1778)
                     /gene="cobT"
                     /locus_tag="VF788_11825"
     CDS             complement(663..1778)
                     /gene="cobT"
                     /locus_tag="VF788_11825"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008939 -
                     nicotinate-nucleotide-dimethylbenzimidazole
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HEX8934853.1"
                     /translation="MGPSNGHQVPQERRVQFPTITPPDLQAHREAVARHGQLTKPAGS
                     LGRLEELGVWAAACQGACPPHSFAHPQVVVFAGDHGVAAHGVSAYPSEVTQQMVSNFL
                     SGGAAVNVLAAATGATVRVVDLAVDCDPATVTAPPLVMGHKVRRSSGAIHLQDALTDV
                     EVIQALDAGVAIADEEIDRGADLLVVGDMGIGNTTPAAVLIAALTGVEPVAVVGRGSG
                     IDDAGWMRKAAVIRDALRRARPVVTDPVALLRTAGGADIAAMAAFLAQASLRRTPVIL
                     DGVVVGAAAMLAEELAPGARHWWVAGHRSVEPAHTLVLQHLELDPILELGMRLGEGSG
                     ALGALPLIQMAVRVLAEMATFTDAGVSGPIGAPLPTR"
     gene            complement(1786..2310)
                     /locus_tag="VF788_11830"
     CDS             complement(1786..2310)
                     /locus_tag="VF788_11830"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0008820 - cobinamide phosphate
                     guanylyltransferase activity [Evidence IEA];
                     GO_function: GO:0043752 - adenosylcobinamide kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HEX8934854.1"
                     /translation="MRTLVLGGARSGKSAYAEGLLGEAEVDYLATARHHSDDPDWVAR
                     IAVHIARRPSGWRTVEPSDLPGALRAAGPAPVLVDDIATWLTGELDDAGAWTGNAEAM
                     RACHARCTELVSAVTTCPVRLVLVSAEVGLGVVPATPAGRLFRDELGALNAKLATACD
                     EVLLLVAGLPVKLR"
     gene            complement(2323..2964)
                     /locus_tag="VF788_11835"
     CDS             complement(2323..2964)
                     /locus_tag="VF788_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3043 domain-containing protein"
                     /protein_id="HEX8934855.1"
                     /translation="MRFLRGNTGSDATDPEPEPAGEVEPDQEEIARRSRTISKGRPTP
                     SRREAEGRKRGPAPPPPRTQREALTRMRGSKEERRNASAQRRERMLAGDEKYLLPRDR
                     GPVKAYVRDLVDSRRHLAGAFMPLALLVIVVILVPSPIVQSYVSLVSMVMLVAIIVEG
                     VLLGRIVNRRVRERFPKASESGASLGFYAMTRATQLRRLRVPKPRINRGDPIP"
     gene            3102..3464
                     /locus_tag="VF788_11840"
     CDS             3102..3464
                     /locus_tag="VF788_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010225492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HEX8934856.1"
                     /translation="MTVENIAGTEVPTHGVELTDAAATKAKALLDQEGRTDMHLRIAV
                     QPGGCAGLRYQLFFDERTLDGDTKRDFNGLAVVVDRMSVPYLQGAVIDFVDTIEKQGF
                     TIDNPNAGGSCACGDSFN"
     gene            complement(3531..>4308)
                     /locus_tag="VF788_11845"
     CDS             complement(3531..>4308)
                     /locus_tag="VF788_11845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019815148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEX8934857.1"
                     /translation="TIYREPLSLAAFEKVPGGLRRALGRVSTHIPEGVRGKDLLRRGA
                     LTLEERYYGNARIFRDDQLREVLRGYDPTISHADVTADAYTTSTGWDPVARMQHVDLF
                     TWLRGDILVKADKVTMANSLELRVPFLDPEVFRVASTIPLSEKITRETTKHALRRALR
                     DIVPAHVLNRAKLGFPVPIRHWLRHDLHEWARSIVDDSGTAELLDLTAVHRMLDEHRA
                     GPRDHSRRIWAVLVFMLWHGIFVEQRIIPAVPEPRYPVQV"
BASE COUNT          744 a         1482 c         1414 g          668 t
ORIGIN      
        1 tcggcggcgg gtatgcgctg agatcgttat caccaggaga ctggccagga tcaccgccag
       61 cgggccctgc cagggccgcc cgggcaccgc cagcaggcca ccagccagca gaattgccaa
      121 ccaggtcgcg ggtactgcga cgggctggct actggccacg agggcaccca tgccggcggg
      181 ccgagcagcc ggcatccctc tccgggcgca ccagctgtag gccgctcgtc cggcgatcat
      241 cgccagaatc acggtgatca gccggctggt ttgtgcgagg gctcccagcg cagtggcctg
      301 cgcgatcagc accaacacca gtgtgacaac tccgaatggc ccgcacggcc catcccgcat
      361 cacgtccaat gcccgctgtg gtccgccgta gcaacctagc ccgtcggccg tgtcggccag
      421 gccgtccagg tgcatcccgc gagtcaggcc ggccagcatc cccactacga cgagaccggc
      481 cagcaaggat ggcgtgccca gcgcgtgcag cgccgtcagc actccagcag caaccaaacc
      541 cagtacggca ccgatcaccg gtgaccagta cagcgcccgg cgagccatgt cccggttcac
      601 ttcgccggac gttggcaccg gcaggatggt cagccaggac accgcaagcc gcagtccact
      661 gatcacctgg ttggcaacgg ggcaccgatt ggcccggaga cgccggcgtc ggtgaaggtg
      721 gccatctcgg cgagtacccg gacggccatc tgaatcagcg gcagcgcccc gagggcgcca
      781 gacccttctc ccaaccgcat ccccagctcg aggatggggt ccagctctaa atgctgcagg
      841 accagtgtgt gtgcgggttc aaccgagcga tgcccggcca cccaccagtg ccgcgcgccg
      901 ggtgcgagct cctcggcgag catcgccgcc gccccgacga ccacaccgtc gagtatcacc
      961 ggcgtgcgcc ggagtgaagc ttgagctagg aaagccgcca tagccgcgat atcggcgccg
     1021 ccagcggtgc gcagcagtgc gacgggatcg gtgaccaccg ggcgagctcg gcgcagcgcg
     1081 tcgcggatca cggccgcctt tcgcatccag ccggcgtcgt cgattccgct gccacggccc
     1141 accaccgcca caggttccac cccggtaagc gccgcgatca gcaccgcagc gggagtggtg
     1201 ttgccgatgc ccatatcgcc cacgacgagc aggtcggcgc cacggtcgat ctcctcgtcc
     1261 gcgatcgcga ctccggcgtc cagcgcctgg atcacttcca cgtcggtcag cgcgtcctgc
     1321 agatggatcg cgccgctgga gcgacggacc ttgtgcccca tgaccagcgg tggcgccgtg
     1381 acggtggcag ggtcgcagtc cacggccaag tcgacgaccc gtacggtcgc ccccgtcgcc
     1441 gcggcgagca cgttcactgc tgcgcctccg ctgaggaagt tgctcaccat ctgctgggtg
     1501 acctcgctgg gatacgcgga caccccatgt gcggcaacgc catggtcccc ggcgaacacg
     1561 accacctgcg ggtgggcgaa ggagtgcggt gggcaggccc cctggcaggc agcagcccac
     1621 actcccagtt cctccagtcg acccagggag cccgccggtt tggtcagctg cccatgacgg
     1681 gccaccgctt cgcggtgggc ttgcaggtct ggtggcgtga ttgtggggaa ctgcacgcgg
     1741 cgctcctggg gtacttggtg tccattgctt ggacccatct ttcccttagc gcagtttgac
     1801 aggcaggccc gccaccagca gaagcacctc gtcgcatgcc gtggcaagct ttgcgttcag
     1861 cgcaccgagc tcgtcgcgga acagccgtcc cgcgggggtc gccggcacaa cgccgagccc
     1921 tacctccgcg ctgaccagga cgaggcgcac cggacaggtc gtcaccgctg acactaactc
     1981 cgtgcaccgt gcgtggcagg cccgcatggc ctccgcgttg cctgtccacg ctcctgcgtc
     2041 gtccaattcg ccggtcagcc aggtggcaat atcgtcgacc agcaccggcg ccggacctgc
     2101 ggctcgcagt gcaccgggga ggtcggaggg ctcgacggtg cgccaacctg agggtctgcg
     2161 ggcgatgtgc acggcaatcc gcgccaccca gtcaggatca tcggagtggt gccgggcggt
     2221 ggccagataa tccacctctg cctcgcccag taacccctcg gcgtaggcag acttgcccga
     2281 gcgcgcacca ccgagcacta gcgtccgcat cagctacggc ggttaaggga tcgggtcgcc
     2341 gcgattgatt cgcggcttgg gtacccgcag ccggcgaagc tgggtcgccc tggtcatggc
     2401 atagaagccc aggctcgccc cggactccga ggccttgggg aatcgctcgc ggacgcgacg
     2461 gttgacgatc cggccgagta acaccccctc gacgatgatc gcgacaagca tcaccatcga
     2521 taccagggac acgtacgatt gcactatcgg cgagggcacc aggatcacca caatcaccaa
     2581 cagagccagt ggcatgaagg cgccagcgag gtgccgccga gaatccacca gatcccgcac
     2641 gtaggccttc accgggccac gatctcgagg cagcaggtac ttctcgtccc cagccagcat
     2701 gcgttcccgg cgctgagcgg aggcgttgcg gcgttcctcc ttggatccgc gcatccgggt
     2761 gagggcttcc cgctgagtgc ggggcggggg cggcgctggg ccgcgcttgc gaccctcggc
     2821 ctcccggcgg ctcggggtcg gtcgaccctt gctgatcgtg cgggaccggc gagcgatctc
     2881 ctcctggtcg ggctcaacct cccctgccgg ctccggctct ggatcggtgg cgtcagagcc
     2941 cgtgttgccg cgcaggaacc tcacgacgac caccctaggg cacggatctg tgaacggtga
     3001 tgtgtcacca ttggaggcgc ggaatcatcc gacgggtcgc gggcgttcgc gtagagtaga
     3061 acgaagctgt ccgtaccaag cgtaaatcca ggggagagtc catgaccgtc gagaacatcg
     3121 ccggcaccga ggtgcccacg cacggtgtcg agctcaccga cgcggccgcc accaaggcga
     3181 aggcgttgct cgaccaagag ggtcggaccg atatgcacct gcgcatcgct gtccaaccgg
     3241 gtggttgtgc cgggctgcgc taccagctct tcttcgacga gcgcacgctc gacggggata
     3301 ccaagcggga cttcaacgga cttgctgttg tggtcgaccg gatgagcgtg ccatatctgc
     3361 agggcgccgt gatcgatttc gtcgacacca tcgagaagca gggcttcacg atcgacaacc
     3421 ccaacgccgg cggctcctgc gcctgcgggg attcgttcaa ctaacgaaga aaacgcaggc
     3481 ccggccagtc aacgtgtcgg gcacacggtg tgtcgcgcgc acgtgcttgg ttacacctgc
     3541 accgggtagc gcggttccgg caccgccggg atgattcgct gctcgacgaa gatgccgtgc
     3601 cagagcatga acaccagcac cgcccagatc cgtctgctgt ggtcgcgcgg acccgcacgg
     3661 tgctcgtcga gcatccgatg cacggccgtg agatcgagca actctgcggt gcccgagtcg
     3721 tcgacgatgc ttcgtgccca ttcgtggagg tcgtggcgaa gccagtggcg gatcggcacg
     3781 gggaaaccaa gtttggctcg attcaacaca tgcgcgggca cgatgtcacg cagcgcccgg
     3841 cgcagtgcat gcttggtcgt ctcgcgagtg atcttctccg acagcgggat ggtcgaagcc
     3901 acccggaata cttccggatc gaggaaaggc actcgtagct cgagtgaatt ggccatggtc
     3961 accttgtcgg ccttgaccag gatgtcgccg cgcaaccagg tgaagaggtc cacatgctgc
     4021 atgcgggcga cgggatccca gccggtggac gtggtgtagg cgtcggcggt gacatcggcg
     4081 tgcgagatgg tcggatcata tccgcgcagc acctcgcgca gctgatcgtc ccggaagatc
     4141 cgggcgttgc cgtagtagcg ctcttccagc gtcaatgccc cgcgacggag caggtcctta
     4201 ccgcgcactc cttccgggat gtgggtggag acccgcccca gcgcgcggcg caacccaccc
     4261 ggcaccttct cgaaagcggc caacgacaac ggttcccggt agatggtg
//
LOCUS       DASVXZ010000568         3467 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_510287, whole genome shotgun sequence.
ACCESSION   DASVXZ010000568 DASVXZ010000000
VERSION     DASVXZ010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3467
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510287"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VF788_11850"
     CDS             <1..612
                     /locus_tag="VF788_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8934858.1"
                     /translation="AYEMLDRLGTDDGVRTLLVFASNIAVSAPHHTHIAERLAQLDCL
                     VVSGFVLSETAALADVVLPCTQWAEEEGTLANLEGRVLLRRRRWVHHPGCGPICRPLH
                     ALAQRLGCPTSFPEAPREVFDELRAASAGGMADYAGITYERIASRLDEAMQQSVDAYR
                     DPGQERAQPVTEGQFRRSHRREVGDLPTAQPRVPLGRRPVHHR"
     gene            764..2362
                     /gene="serA"
                     /locus_tag="VF788_11855"
     CDS             764..2362
                     /gene="serA"
                     /locus_tag="VF788_11855"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007031601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEX8934859.1"
                     /translation="MTTPNRPVVLIAEKLAPSVLDVFADEFDVQHVDGTDRQALFDAL
                     PVADALLVRSATRVDAEALVHAPRLKVIARAGVGLDNVDVPAATERGVMVVNAPTSNI
                     VSAAEHAVALLMAVARRIPAADASLRSGQWKRNSFSGVELFGKTIGVVGLGKIGQLVA
                     QRLVAFGTALIAYDPYVSPARAAQLGIELVDLDELLSRADAISIHLPKTAETLGLIGA
                     DQLAKTRPGVLIINAARGGLVDEEALADAVRSGQVGGAGIDVFSTEPCTASPLFELPE
                     VVVTPHLGASTAEAQDRAGTDVAHSVLLALRGDFVPDAVNVISGGVVGEEVRPWLPLT
                     QKLGTVLATLTARSPDSVTVDVRGELAAEDVTVLQLAALRGIFIGVVDEQVTFVNAPR
                     LAQERGVAIAVATAPESPTHRSVVSVRGAFTDGSSYSVSGTLAGPAQVPKLVEVNGRN
                     FDLRAQGEAILLEYPDRPGVMGIVGTLLGEAGVNIEAAQISQTTVGTDAIMMLRVDRP
                     VPAEVLTVLGPSVGARTARPVTFG"
     gene            2564..>3467
                     /locus_tag="VF788_11860"
     CDS             2564..>3467
                     /locus_tag="VF788_11860"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEX8934860.1"
                     /translation="MRLAVIPGDGIGPEVIGEALKVLDEVAPDAETTPYDLGAARWHS
                     TGELLPESVLGELRQHDAILLGAVGDPSVPSGILERGLLLRLRFELDHHVNLRPARLY
                     PGVRSPIADPGTIDMIVVREGTEGPYAGNGGLLRKDTPNEIATEVSLNTAFGVERVVR
                     DAFARAAARPRRHVTLVHKTNVLSHAGSLWSRIVEEVSLQHPDVTVAYQHVDACTIHL
                     VTDPGRFDIIVTDNLFGDILTDLAAAVTGGIGLAASGNVNPDRTAPSMFEPVHGSAPD
                     IAGQGVANPVGQIWSAAMMLEHLGE"
BASE COUNT          529 a         1142 c         1217 g          579 t
ORIGIN      
        1 gcctacgaga tgctcgatcg gttgggcacc gacgacgggg tgcggaccct gctggtgttc
       61 gcgtccaaca tcgccgtctc cgcgccccac cacacccaca tcgccgagcg gctggcccag
      121 ctggactgcc tggttgtcag cggcttcgtg ctgtccgaga ccgcggcgct cgccgacgtc
      181 gtgttgccct gcacccagtg ggcggaggag gagggcacgc tcgcgaacct cgaaggtcgg
      241 gtgctgttgc gccgcaggcg ctgggtccac cacccggggt gcggtccgat ctgcagaccc
      301 ctgcacgcgc tggcgcagcg gctcggctgc ccgaccagct tcccggaggc gccgcgggag
      361 gtgttcgatg agctgcgcgc ggccagcgcg ggcggcatgg cggactacgc gggcattacc
      421 tacgagcgca tcgccagccg gctcgacgag gccatgcagc agtcggtgga tgcctaccgg
      481 gacccggggc aggaacgtgc gcaaccggtg accgagggcc agttccgacg gtctcatcga
      541 cgggaagttg gtgatctgcc cactgcacaa ccacgcgttc cgcttggtcg acggccagtg
      601 caccaccggt gaatcaccgg tgcgggcata ccgggtatcc gtagacgacg gtgagctcgt
      661 ggtcgacctt tgaaaacccg agctcatcaa tctactgggc agggacgttg catgcgacac
      721 acgatgggtg gcgccgcgcg gtacctcagt agagtggacg gtcgtgacca cacccaatcg
      781 gcccgtagtc ctgatcgccg agaagcttgc tccgtccgtg ctcgacgtct tcgctgacga
      841 gttcgacgtt cagcacgtcg atggcaccga ccgccaagcc ctgttcgacg cgctgccggt
      901 cgccgacgct ctgctggtgc gttcggccac ccgggtggac gctgaggcgc ttgtgcacgc
      961 cccccggctc aaggtcatcg ccagggcagg cgtcggtttg gacaacgtgg atgtgccagc
     1021 ggccaccgaa cgtggggtga tggtggtcaa cgccccgacc tcgaacatcg tctccgcagc
     1081 cgagcacgcc gtcgcgctgc tgatggcggt ggcccggcgc atcccggcgg ctgatgccag
     1141 cctgcgtagc gggcaatgga aacgcaactc gttcagcggg gtggagctgt tcggcaagac
     1201 catcggtgtg gtcggcctgg gaaagatcgg tcaattggtc gcgcagcggc tggtggcttt
     1261 cggcaccgcg ctaatcgctt acgatcccta cgtctccccg gcgcgtgccg cgcagttggg
     1321 catcgagctg gtcgatctgg acgagttgct ctcccgcgct gacgccatct cgattcacct
     1381 gcccaagact gccgagacgc tcgggctgat cggagccgat cagctggcca agaccaggcc
     1441 gggggtactg atcatcaacg ccgcccgcgg tggcctggtc gacgaggagg cgctggccga
     1501 cgcggtgcgc agcggccagg ttggcggggc cgggatcgac gtcttcagca ccgagccgtg
     1561 caccgccagt cccctgttcg agctgccgga ggtggtcgtc accccgcatc tgggtgcctc
     1621 gaccgccgag gcgcaggatc gcgcgggcac cgatgtcgcg cacagcgtgc tgctggcgct
     1681 gcgtggcgat tttgtgcctg acgcggtgaa cgtgatcagc ggcggggtgg tgggtgagga
     1741 ggttcgacct tggctgccgc tgacccagaa actgggtacg gtgctggcga ctctgaccgc
     1801 gcgctcgcct gattcggtaa ccgtcgacgt acgcggggag ctggccgctg aggacgtcac
     1861 cgtcctgcag ctcgccgcgc tgcgtggcat cttcatcggt gtggtggatg agcaggtcac
     1921 cttcgtcaac gcaccccggc tggcgcagga gcgcggggtc gccatcgccg tggccaccgc
     1981 gccggagagc ccgacccatc gcagcgtggt cagcgtgcgg ggcgccttta ctgacggcag
     2041 cagctactcg gtctcgggaa cgttggccgg gcccgcgcag gtgcccaaac tggtcgaggt
     2101 caatggccgt aacttcgacc tgcgagcaca gggcgaggcg atcctgctgg aataccccga
     2161 ccgtccgggt gtgatgggca tcgtcggcac cctgctgggc gaggcgggcg tcaacatcga
     2221 ggcagcccag atcagccaga cgactgtggg gaccgatgcg atcatgatgt tacgggtcga
     2281 ccgcccggtt cctgccgagg tactcacggt gctcggacct tcggtaggcg cccgcaccgc
     2341 ccgcccggtc accttcggct gaccttcgcg caagacctcg gccggcgcaa tctacgatcg
     2401 tgccagtagc ggggacggtc cggcgagtcc atgctgtggg caggcatacc cgatcgggtg
     2461 tccccatttg gagtatccgc tgtgcaatgc cctgtgtagc agcgggtaac ctgcgcgctg
     2521 cggagggttc ccatggcggg gccccgggca ctggaggtgg ctcatgcggc tcgcggtgat
     2581 ccccggtgac gggattggac cggaggtgat cggcgaagcg ctcaaagtcc tcgatgaggt
     2641 cgccccggat gccgagacca ccccttatga tctgggcgct gcgcgctggc attccaccgg
     2701 ggaactgctt cccgagtcgg tactgggtga acttcgccag cacgacgcca tcctgctcgg
     2761 cgcggtgggc gatccgtccg tgcccagcgg gatcctggag cgcgggttgc tgctacggct
     2821 gcgcttcgag ctcgatcacc acgtgaacct gcggccggcg cggttgtatc cgggggtacg
     2881 cagccctatc gcggacccgg gaaccatcga catgatcgtg gttcgggagg gcaccgaggg
     2941 cccctacgcg ggcaacggcg gattgctgcg caaggacacc ccgaacgaga tcgcgaccga
     3001 ggtcagcctg aacaccgcgt tcggtgtgga gcgggtcgtg cgcgacgcgt tcgcccgcgc
     3061 cgccgcgcgt ccgcgcaggc acgtgacgtt ggtgcacaag acgaacgtgc tcagccacgc
     3121 cggatcgctg tggtcacgga ttgtggagga ggtatcgctg cagcatcctg acgtgacggt
     3181 ggcctaccag cacgtcgatg catgcaccat tcacctggtg accgaccccg gccggttcga
     3241 catcattgtc accgacaacc tgtttggcga catcctgact gacctcgcgg ccgccgtcac
     3301 cggcgggatc ggcctggccg cgtccggcaa cgtgaacccc gaccggaccg cgccctcgat
     3361 gttcgagccc gtgcacggct ccgcgcccga catcgccgga cagggcgtcg ctaaccccgt
     3421 ggggcagatc tggtcggctg cgatgatgct ggaacatctg ggcgagg
//
LOCUS       DASVXZ010000569         2584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_331489, whole genome shotgun sequence.
ACCESSION   DASVXZ010000569 DASVXZ010000000
VERSION     DASVXZ010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331489"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..656
                     /locus_tag="VF788_11865"
     CDS             <1..656
                     /locus_tag="VF788_11865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934861.1"
                     /translation="GTAIDLTPIWLKDFAVRTFGSYDKVVLLLGMAVVIGLVGVTAGL
                     LSRRSRTPGLMLFVVLGVVATVAVLTRPTAGAFDVIAPLVALIVSVGTFVVLHRLGLL
                     TELPTGDGAAAGVSRRALLVGSVTVAAGAGIAAAGGQLLTGRGGVGSSRTAVGRIMPT
                     VAAPRSQPGRTSPLTGHPLLSPRTGIFTGWTSTSHCRSCVPRTGGYGSTGWSTASSR"
     gene            1060..1491
                     /locus_tag="VF788_11870"
     CDS             1060..1491
                     /locus_tag="VF788_11870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934862.1"
                     /translation="MQRAPIKTMSRIDSPGAFGRVNPDAAIPGIARAQTKGIEKIEVR
                     VDRGEWRPAELSTEVNVDTWRMFRLRGRWEPGNHVAEVRATDKTGYTQTTDRAAPIPD
                     GASGWHSVQFTLLPQRKPEPAAADHRSNEKRAGYSTSVSNS"
     gene            1629..1967
                     /locus_tag="VF788_11875"
     CDS             1629..1967
                     /locus_tag="VF788_11875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934863.1"
                     /translation="MAALTAVVGACSSTQGPATDSQASAPTSNSAAPPGEATAPTGSG
                     VTKIGDIFGPACSQVPTEGPGSAQGMVNDPVGTAASHNPLLTTLTKAATAEPGRHPQQ
                     RPGDHRVRPG"
     gene            1951..2277
                     /locus_tag="VF788_11880"
     CDS             1951..2277
                     /locus_tag="VF788_11880"
                     /inference="COORDINATES: protein motif:HMM:NF014522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEX8934864.1"
                     /translation="MFAPADPAFAALEAQHPGITKQLTTAPDVASPNSQLAKILTYHV
                     VGQRYDAAGIVSAGTLNSLEGAKLTIGGTAAAPTVNGAPVLCGNIPTKNATVFVIGQV
                     LSLPAS"
BASE COUNT          471 a          839 c          830 g          444 t
ORIGIN      
        1 gcggcactgc gatagacctc accccgattt ggctcaagga cttcgcggtc cgcaccttcg
       61 gcagctacga caaggttgtt ctgttgttgg gcatggcggt ggtgatcggg ctggtcgggg
      121 tcactgccgg actgttgtcc cggcgctccc gcacacctgg gctgatgctg tttgtggtac
      181 tcggggtcgt cgccaccgtt gcggtgctga cccgtcccac cgcaggtgcg tttgatgtga
      241 ttgccccact ggttgcgctg atcgtcagtg tcgggacgtt cgtcgttctg caccggctgg
      301 gcctgctcac cgagcttccc accggggacg gggcggcggc gggggtgtct cgccgcgcgc
      361 tgctcgtcgg gtcggtaacg gtcgctgcgg gtgccggcat cgcggccgcc ggtggccagt
      421 tgctgaccgg gcgtggtggc gtcgggagct ctcgcacggc ggttgggcgg atcatgccta
      481 cggtggccgc gccccgatcc cagccggggc ggacttcgcc tctgacgggt cacccacttt
      541 tatcacctcg aaccgggatt tttaccgggt ggacgtcaac ctcacactgc cgcagctgcg
      601 tgccgaggac tggcggttac ggatccacgg gatggtcgac cgcgagctca cgctgagctg
      661 gacggatctg aaatcgcgca aactgattga gcaccccgtg acgatgacct gcgtgtccaa
      721 tgaaattggc ggtccttaca tctctaccgc caatttcact ggcgtgctgc tggccgacgt
      781 cctccaggag tccggtgtgc ggcggggtgc ggatcaggta ttcaccacca gcatcgacgg
      841 atggacttgt ggcagcccga ccgccgtcct gaccgatcca ggtaggcggg ccatgctggt
      901 gatcgggatg aacggtgaac cgctgccgat tgagcacgac ttcccggttc ggatgattgt
      961 ccccgggctt tacggtttcg tgtccggtac caagtggatc accgacatgg aactcaccac
     1021 attcgacacg aagcgagctt atcggttgca gcgaggttgg tgcagcgggc cccgatcaag
     1081 acgatgtccc gtatcgacag tcccggtgcg ttcggacggg tcaacccgga cgctgcaatc
     1141 ccaggtattg cacgggcgca gacaaagggc atcgagaaga tcgaggtacg cgttgaccgc
     1201 ggcgagtggc gacccgcgga gttatccact gaggtcaacg tggacacctg gcggatgttc
     1261 cggctgcggg gacggtggga acccggcaac cacgtggccg aagtacgtgc gacggacaag
     1321 accggctaca cccagactac ggaccgtgcc gcgcccattc cagacggcgc cagtggatgg
     1381 cattcagtcc agttcaccct ccttcctcaa cgcaagcctg aacccgccgc cgcggatcac
     1441 cgaagtaatg agaaacgtgc tggctacagt acaagtgtgt ccaattcgta gtcacaaatg
     1501 gtgaacccac cactggcgat taccgaatta atcaacgtga gtcccggacc agccggggca
     1561 gccgaacagt agagatcgag tgaggaaatt caatgaggaa aatccagcga ctggccgcgg
     1621 ttggtgctat ggccgccctg acagctgtgg tcggcgcctg cagcagcacg caagggccag
     1681 ccaccgatag tcaggcctca gcacccacca gcaactcggc tgcgcccccc ggcgaggcca
     1741 ccgcgcccac cggtagcggc gtcaccaaga tcggtgacat cttcggtccg gcctgcagcc
     1801 aggtacccac cgagggcccg ggctccgcgc agggcatggt caacgacccg gtgggcaccg
     1861 cggccagcca caacccgctg ctgaccacgc tcaccaaggc agcgaccgcc gaacctggtc
     1921 gacaccctca acagcgcccc ggcgatcacc gtgttcgccc cggctgaccc agctttcgcg
     1981 gcgctggagg cccagcaccc gggaatcacc aagcagctga ccaccgcccc ggatgtggcc
     2041 tcgccgaaca gtcaactagc caagatcctg acctaccacg tggtcggcca gcgctacgac
     2101 gccgcaggca tcgtctcagc gggcacgcta aacagcctgg aaggcgccaa gctgacgatc
     2161 ggtgggaccg cagcggcacc gaccgtcaac ggcgccccgg tgttgtgcgg caacatcccc
     2221 accaagaacg ccaccgtgtt cgtgatcggg caggtgctgt ccctgccggc ctcctgagca
     2281 gatcgacgca gttgctactc gtcaggggtg gctccccacg gggctacccc tgacgacgtg
     2341 gcgggtcagg agaagttcac tgctgccaag gtgtgtccca cgacccaggc agctcatcgc
     2401 gatggattcc tggggaagga tggactcaaa ccaacagagg gaagcgccta tgggaaacat
     2461 cacgcgacgt ggccgacggt ggacgctgtg gatatgcacg tcgctgggag gggcagtcgc
     2521 cgccaacgag ctcagccacc aactgctgcc gttcctgcga tcgtccgtcc tacgcttgct
     2581 gatc
//
LOCUS       DASVXZ010000570         2714 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_870009, whole genome shotgun sequence.
ACCESSION   DASVXZ010000570 DASVXZ010000000
VERSION     DASVXZ010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_870009"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2216)
                     /locus_tag="VF788_11885"
     CDS             complement(<1..2216)
                     /locus_tag="VF788_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEX8934865.1"
                     /translation="MPDFTLAYDGFDPAQEGLREALTSTGNGYFATRGAAEWEDADAI
                     HYPGTYAHGCFNRETTILGGRPVLNEDLVNLPNWLLLKLRIEGEEAIRLDNVEVLSYR
                     HSYDIRNAMVAREVQFRDRAGRSTTLRSRRFVSMANSHLAGIEWTVTPDNWSGRVEVI
                     SGLDGRVTNHMVARYRALEGRHLNPVSPRTFSPEIIALKVQTRQSNIYIAEAARTCVF
                     RGGEGAQPLEVARSLYQMEDYIQQVLAFDVEQGSPVRVEKMISLYTSHDNAIAETLVA
                     AGKHIGRCPDFAAALTEHESAWAELWDIGDIELPREPRVQLLLHFHICHVLQVCSRHT
                     ARHDAGVPARGLNGEAYRGHVFWDELYVYPYLNFRLPEVTRGLLMYRYRRLAEARAAA
                     REAGYRGAMFPWQSGSDGTEETQVVHLNPLSGQWHPDHSHNQRHVNAAIFYNVWQYYQ
                     ATDDLAFIRDYGAELMLEIARFWASIARYNPERDRFEIHGVMGPDEFHERYPGVEEGG
                     LRNNAYTNLMVAWIADTAPRVLNLLPRSRRAALRVRLGLTDDELRTWDDMSHKMFVPF
                     HADGIISQFEGYADLEELDWERYRAEHPNIGRLDRILKAEGDDPNRYQLAKQADAVML
                     FFLFSADELRELLERLGYNYDPDLARRTIDYYDQRTSHGSTLSLVTHAAVLARLDPES
                     SWQRFLVALESDVGDVQGGTTKEGIHMGVMSGTLDILQRSYLGATVREGVLHFNPTL"
     gene            complement(2244..>2714)
                     /gene="otsB"
                     /locus_tag="VF788_11890"
     CDS             complement(2244..>2714)
                     /gene="otsB"
                     /locus_tag="VF788_11890"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HEX8934866.1"
                     /translation="LIFEVRDRLCAEVASIPGAVVEPKRASVAVHYRRADPQHHARIS
                     ALVDELLAEYTGRLKVTPGKMVFEVQPKIDWHKGKAVLHLLQTLDLNADDVVPLYLGD
                     DITDEDAFRALAGRGVGIIVGNPDDPEVGDRSTAADFVLQSTVEVEQFLNTLAR"
BASE COUNT          467 a          851 c          909 g          487 t
ORIGIN      
        1 agtgtggggt tgaaatgcag aactccctcg cgcacggtgg cgccgaggta actgcgctgc
       61 aggatgtcga gtgtgccgga catgacaccc atgtggatgc cttccttggt ggtgccgccc
      121 tgcacgtcac ccacgtcgct ctccagcgcg acgaggaagc gctgccacga gctctccgga
      181 tccaggcggg cgagcacggc ggcgtgcgtg accaggctca gggtcgaacc gtgggaggtg
      241 cgctggtcgt agtagtcaat ggttcgccgg gcgaggtcgg gatcgtagtt gtatccgagt
      301 ctttcgagca gctcgcgaag ttcgtcggcg gagaacagga aaaatagcat cactgcgtca
      361 gcctgcttgg ccagctggta gcggttaggg tcgtcgcctt cggccttgag gatgcggtcc
      421 aggcgcccga tgttgggatg ctcggcgcgg tagcgttccc agtccagctc ctcgagatcg
      481 gcgtagccct cgaactggct gatgatgccg tcggcgtgga acgggacgaa catcttgtgg
      541 ctcatgtcat cccacgtgcg cagctcgtcg tcggtgagcc cgagacggac ccgcagtgcg
      601 gcgcggcggc tcctgggcag caggttcagc acccgcgggg cggtgtcagc gatccaggcc
      661 accatcaggt tggtgtaggc gttgttgcgt agcccacctt cctcgacgcc gggatagcgc
      721 tcgtggaact cgtcgggccc catcaccccg tggatctcga atcggtcacg ctcggggttg
      781 taacgcgcga tcgaggccca gaaccgggca atttcgagca tgagctcagc gccgtagtca
      841 cgaataaacg ccaggtcgtc agtggcctgg tagtactgcc agacgttgta gaagatcgcc
      901 gcgttgacgt ggcgctggtt gtggctgtgg tcggggtgcc actgcccgga cagcggattg
      961 aggtggacga cctgcgtctc ctcggtaccg tcgctgccgc tttgccacgg gaacatcgcg
     1021 ccccgatagc cggcctcccg cgcggcggcc cgcgcctcgg cgaggcggcg gtagcggtac
     1081 atcaacaacc cgcgggtgac ctcgggcagc cggaagttga ggtaggggta gacgtagagt
     1141 tcgtcccaga acacatgccc gcggtaagcc tcaccattga gtcctcgagc cggaacaccc
     1201 gcgtcgtgcc gggcagtgtg ccgcgagcac acctgcagca catggcagat gtggaagtgc
     1261 agcagcaact gcacgcgagg ctcccggggc agctcgatgt caccgatgtc ccacagctcg
     1321 gcccacgccg actcgtgctc ggtcagcgcc gcggcgaagt ccgggcagcg cccgatgtgc
     1381 tttccggcgg cgaccagagt ctcggcgatc gcgttgtcgt gtgaggtgta cagcgagatc
     1441 atcttctcca cgcgcaccgg gctaccctgc tcgacgtcga aggcgagaac ctgctggatg
     1501 tagtcctcca tctggtacag gctgcgggca acttccagtg gctgggcacc ctcaccgccg
     1561 cggaagacgc aagtacgcgc ggcttcggcg atgtagatat tcgactgtcg agtctgcacc
     1621 ttcagggcga tgatctcggg actgaacgta cgcggagaca ccgggttgag gtgacgtccc
     1681 tcgagcgcgc ggtaacgggc aaccatgtga ttggtcacgc gaccatcgag accggagatc
     1741 acttccacgc gcccagacca gttgtctgga gtcaccgtcc actcgatgcc agccaagtgg
     1801 ctgttcgcca tgctcacgaa ccggcggctg cgcagggtcg tcgagcggcc ggcgcggtcg
     1861 cggaactgga cctcacgcgc caccatggcg ttacggatgt cgtaggagtg gcgataggag
     1921 agcacctcga cattgtcgag ccggatcgcc tcctccccct cgatcctcag tttcagcagt
     1981 aaccaattgg ggagattgac caggtcttcg ttgaggaccg ggcgaccacc gagaatggtg
     2041 gtctcccggt tgaagcaacc gtgggcgtat gtgcccgggt agtggatcgc gtcggcgtcc
     2101 tcccactcgg ccgctccccg ggtagcgaag tagccgttgc cggtcgaggt cagggcctcg
     2161 cgcaaacctt cctgcgcggg gtcgaaaccg tcgtaggcga gtgtgaagtc cggcacgggt
     2221 gcctttccga aagcgtgggc gtgtcagcgg gccagagtgt tgaggaactg ctcgacctca
     2281 acggtggatt gcaggacgaa gtcggctgcg gtggaccggt cccccacctc cggatcgtcc
     2341 gggttaccga cgatgatgcc aacgccccgc ccggccagcg cgcggaaggc atcctcatcg
     2401 gtgatgtcgt ccccgagata caacgggacg acatcgtcgg cgttgaggtc cagtgtctgc
     2461 agcaggtgca ggacggcctt gcccttgtgc cagtcgatct tcggctggac ctcgaacacc
     2521 atcttccccg gtgtcacctt cagccgtccg gtgtattccg ccaacaattc atccaccagc
     2581 gcggagatcc tggcgtgatg ctgcggatcg gcccgccggt aatgaaccgc gaccgaggcc
     2641 cgcttcggct ccaccaccgc accaggaatc gacgcgacct cggcgcagag ccggtccctg
     2701 acctcgaaga tcag
//
LOCUS       DASVXZ010000571         3761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_421564, whole genome shotgun sequence.
ACCESSION   DASVXZ010000571 DASVXZ010000000
VERSION     DASVXZ010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421564"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..696)
                     /locus_tag="VF788_11895"
     CDS             complement(94..696)
                     /locus_tag="VF788_11895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934867.1"
                     /translation="MAPATVDLLRTHPLVEEILDSHREHAVGDERGWASYRGHVYRVL
                     NLARAVVPDREDRDDKLAIAAAFHDIDVFSSLNYLGPSIRTMDAWLQRTGHGAWAEEL
                     AVIIAKHHHLTPYRGRHATLAEAFRRADLNDLSQGLIRSRLPRDHVRTVRESIDVGVF
                     FTRTVPRAIVRHLIRHPLDPLPIVRARRALQQAGHSGADR"
     gene            complement(1192..2148)
                     /locus_tag="VF788_11900"
     CDS             complement(1192..2148)
                     /locus_tag="VF788_11900"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015102202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03885 family FMN-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEX8934868.1"
                     /translation="MTVYGLHASHEQIHPSELLKAVIRAEQAGFGAAMSSDHFSPWSE
                     RQGHSGFAWSWLGAALQATSLPFGVVNAPGQRYHPAIIAQAIGTLAAMYPGRFWAALG
                     TGEASNEHITGDRWPRKELRAVRLRECVEVIRALLVGEQVSHDGLVQVDRARLWTRPQ
                     QVPALIGAAVSTETARWCAEWADGLITVNAPVDQLRKLVAAYRDAGGRGKLYLQVHLS
                     WATDEGAALTIAHDQWRTNVFAPPVPWDLELTEHFDEAAKHVLPEKVAEVVNISADLG
                     QHAAWLNEYAELSFDEIYLHHVGKEQDKFIDAFGAHVLPKLS"
     gene            complement(2229..3284)
                     /gene="argF"
                     /locus_tag="VF788_11905"
     CDS             complement(2229..3284)
                     /gene="argF"
                     /locus_tag="VF788_11905"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX8934869.1"
                     /translation="MGEETFADDGMQGRSLLKDADLTSSDLRCLLALAGRLKVARRSG
                     REWPRLIGKVVALIFEKPSTRTRCAFEVAAAHQGARVTYLDPASFHMGQLESLEDTAR
                     VLGRLYDGIGYRAKSQASVEALGCHAEIPVWNALTDQWHPTQALADLLTMRENSPKPW
                     SEISLAYLGDGSGNVANSLRVAGALVGMTVRIVCPATLGGDPAVLATAERICRTTSGA
                     VFDTEDIEKGIRGVDFIYTDTWVRIGEPVERWRDRVTMLAPYRVDQELLARTENPDVK
                     YLHNLPAVHDAQTTVGRQIYEETGLAAAEVADEVFKSDASIVFDQAENRMHAIKAVMV
                     ASLGTPDQHSTKLSVAP"
BASE COUNT          714 a         1249 c         1140 g          658 t
ORIGIN      
        1 gcctccacgg gtcacgaccg atcaccaagc agctgcccgt accgggcttt ccggccaccg
       61 ctgccaagat agcttgtgat gggatgacag cgactaacgg tccgcgccgc tgtggcccgc
      121 ctgctgcagc gcccggcggg cgcgcacgat aggcagcggg tcgagtgggt ggcggatcag
      181 gtgccgcacg atggcgcgtg ggacagtgcg ggtgaaaaag actcccacgt cgatcgactc
      241 gcggaccgtg cgtacgtgat cgcggggcag ccgggagcgg ataagaccct ggctcagatc
      301 gttgaggtcc gcccgccgga aggcctccgc tagcgtcgcg tggcgtcctc ggtagggggt
      361 taggtggtgg tgcttggcga tgatgaccgc gagttcctcg gcccaggcgc cgtgcccggt
      421 gcgctgcaac caggcatcca tggtgcggat ggagggcccg agataattca gcgagctgaa
      481 cacgtcgatg tcgtggaagg ccgcggcgat tgccagcttg tcgtcgcggt cctcgcggtc
      541 gggcacgacg gcgcgggcca gattgagcac tcgatagacg tggccgcggt aactggccca
      601 gccacgctcg tcacccacgg cgtgctcgcg atgactgtct agaatctcct cgacgagagg
      661 atgagtgcgg aggaggtcga cggttgcagg tgccacattc gtcatctccg ttcaaaatgg
      721 gcggatttcg acgtttggaa tttacggaga gaatccggag gcgacacggc cggcaccgcc
      781 cgagcgattg actcggacct gagccatgga aacgcctccc atgtcacggg cgaacccgtt
      841 gcaacgcgac gctacgctga acgcgatcgg ctcgccagac cctgtacgac cgcccggcat
      901 tatcgccatc accatgatcg tcgccagatc ttccgaactg ggcattcccg gtgatcatct
      961 cgatgaatcg tcagcaaaag caacgagacg agaccgcact cgtcaatcgc accgatgtgt
     1021 ggccgcagct cagcgacaca caacgaccgc caatcactgc tcacaccaaa aagcacagcg
     1081 gacctgagac caaccgtgcc tcggcgggtc ttgctccggg atgtcccgcc tacgcaggca
     1141 gcgggcatta cctggcggtg tcaagggtct gcgcgcatgt atggatcagt ctcatgacag
     1201 tttcggtagc acgtgggcac cgaaagcgtc gatgaattta tcctgctcct tgccgacgtg
     1261 gtgcaggtag atctcgtcaa agctgagctc ggcatattcg ttgagccatg cggcatgctg
     1321 tccgagatcg gccgagatgt tcaccacctc tgctaccttc tccggcagga cgtgcttggc
     1381 ggcctcgtcg aagtgttcgg tcaactcaag atcccagggc accggaggtg cgaacacgtt
     1441 tgtccgccac tggtcgtgcg cgatcgtcag tgcggcaccc tcatccgtcg cccagctcaa
     1501 gtgcacctga aggtacaact tgccgcgccc accagcgtcg cgataggcgg caaccaactt
     1561 cctcagctga tcaacgggag cgttcacggt aatcagcccg tcggcccact ccgcgcacca
     1621 gcgcgcggtc tccgtgctga cggctgctcc gatcagcgcg ggcacttgct gcgggcgggt
     1681 ccacagccgc gcccggtcga cctggaccag cccatcgtga ctgacctgct caccaacaag
     1741 cagagcccga attacctcga cgcactcgcg caaccgcaca gcacgcagct ccttgcgtgg
     1801 ccagcggtct ccggtgatgt gctcgttgct cgcctcacca gtgcccagcg ccgcccagaa
     1861 ccgacccggg tacatcgcgg ccagcgtgcc gatggcctgc gcgatgatcg ctggatggta
     1921 gcgctgacca ggggcgttca cgacgccgaa gggcagcgag gtagcctgca gcgccgctcc
     1981 cagccacgac cacgcgaacc ccgaatgccc ctgccgctcg ctccacggcg agaaatggtc
     2041 cgaggacatc gccgcgccaa aaccagcctg ctcagcccgg atcacggcct taagcagctc
     2101 ggacggatgg atctgctcat gagacgcgtg cagaccgtac accgtcacac acggagtcta
     2161 acgcgatcgc tgcgtagtaa cctcgacgtc tcggcacggg cccgcagtgc tcctacgcgc
     2221 tccactgctc atggcgccac gctgagcttc gtcgagtgct ggtccggagt cccgagactc
     2281 gccaccatca ccgctttgat ggcgtgcatg cggttctcag cctgatcgaa cacgatggag
     2341 gcgtcagatt tgaatacctc atcggccacc tcagccgcag ctaaccctgt ttcctcgtaa
     2401 atctggcgac cgaccgttgt ctgcgcatca tgcacggcag gcaagttgtg cagatacttg
     2461 acgtccggat tctcagtccg cgccagcagc tcctggtcca ctctatacgg cgcaagcatg
     2521 gtcactcggt cgcgccaccg ctcgaccggt tcaccgatcc gcacccaggt atcggtatag
     2581 ataaaatcga caccgcggat tcctttctcg atgtcttcgg tgtcgaacac ggcgccgcta
     2641 gtagtccggc agatccgctc cgccgtggcc aggacggccg ggtcaccgcc tagggtggcc
     2701 gggcagacga tacgaacggt cataccgacg agcgctccgg ccacgcgcag ggaattggcc
     2761 acgttaccgc tcccgtcacc gaggtaggcg agcgaaatct ccgaccaggg tttgggtgaa
     2821 ttttctcgca tcgtcaggag atcggcgagc gcttgggtgg gatgccattg gtcagtcagc
     2881 gcgttccaaa ccggtatctc cgcatgacac cccagagcct ccacagacgc ctggctcttc
     2941 gctcgatatc cgatgccgtc atacaaccgt cccaaaaccc gtgccgtgtc ctcaagcgat
     3001 tccagctgcc ccatatggaa gctggcaggg tcaagatagg tgacccgcgc gccctgatgg
     3061 gcagcggcga cttcgaaagc gcaccgggtc cgggtcgagg gcttctcaaa gatcagtgca
     3121 acgaccttac cgatcagtcg aggccattcc cttccggacc ggcgagcgac cttcagccgc
     3181 ccagccaaag ccagcaagca ccgtaagtcc gatgaagtca aatctgcatc cttgagcaga
     3241 ctccgcccct gcatgccgtc atcagcgaac gtttcttccc ccacctccac cgctgccccc
     3301 tcccaatcga ccaagcgtcg ctagcccggc aactgccagc caatcacctg cgagccgtca
     3361 tcagtagcag cgcacacggg cccacagctc agcgacatac cgtgactctc ccaagcaaaa
     3421 cgatgcacgg tggaccctca gtccgggatg acgtgatctc agaggtcagg cgcgctgtcg
     3481 ttacggcggc tggccgtcga gggaatcggt cggtatcgca tcgtggcgga gcggggtagc
     3541 ggatgagtac gggcgttgtt gtcctcatga cggaccatgg ctcaggggag ggcagttgcg
     3601 ttccgctgga gaaggccatc gaacttctca cggggcaccg ccgttgtcgg tcgacgcccg
     3661 gcacttcatg gccgatgcca ccggcaaacg gcgcaccgtt gactgcttcc gccgggacgg
     3721 cattccccac atggagacga tcgcgttgtg ccggccggat c
//
LOCUS       DASVXZ010000572         2066 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_243051, whole genome shotgun sequence.
ACCESSION   DASVXZ010000572 DASVXZ010000000
VERSION     DASVXZ010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243051"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..575
                     /locus_tag="VF788_11910"
     CDS             213..575
                     /locus_tag="VF788_11910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934870.1"
                     /translation="MSDVSAAELVEQLRHANARLRELLAARDAEIEALRLEKDAENAE
                     LRAVVTALMCGPRSWSVGWGRAVMTPEYRHRKSRSRPRPDATPNARPVGSRVGVVRRG
                     SARRTDHGVGSRAIPGMA"
     gene            575..1816
                     /locus_tag="VF788_11915"
     CDS             575..1816
                     /locus_tag="VF788_11915"
                     /inference="COORDINATES: protein motif:HMM:NF015038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8934871.1"
                     /translation="MRDPDPQQCQEVDPPAQCRGCAGDLAGAVDAGTGWSQIWDVKVV
                     RWRAEYLLPRRRCGCGITTTACPPAGGVVNGVSYGPVLTAAVVALSAFGNVPVERAST
                     LVEILFGQQVSAGFLDRAGARLAERLVAAGFSQAMQAALVAEPVLTADESPVEVLTPA
                     HDPETGQPVPGAPHVMVIRTPDERLVWLTGLVSRSYDTVIAALRAFAGHLIVDGYGAY
                     QRLLTQAGAVLAGIQQCCAHIMRRCRGVAKLGPGTLQSSWTGDVTSALTEAHAEVEAA
                     KARRKTVLDPGRLAALRERYDKAVDTGIIHNRHRDWDGDGNHPAFVLATWLKTHAEQV
                     WHFTDHFAVDWTSNAAERGVKPAKRHQAVSGYWQTNQTLDRWCLINSYLTSAHNHGLT
                     VLDAITRAQASRPWLPKPVAP"
BASE COUNT          350 a          683 c          711 g          322 t
ORIGIN      
        1 aagccagacc aagccatcct cgcggcaccc ctaaaccatc accaatgcga cacaggacgt
       61 cataggccat cacctgtcgg ccgtgcagta tctcatacag tgtccattca ggggtggggt
      121 gtgacctggg cggagtgtgg ggattgcggg tgacacgccg gtccgggtgg ggatgcttga
      181 tcttccggtg tggatagtaa tgatcgtggt ttgtgtccga cgtgtccgct gcggagctgg
      241 ttgagcagct tcgccatgcc aacgcgcggt tgcgggagtt gctggctgcc agggatgccg
      301 agattgaggc gttgcggctg gagaaggacg cggagaacgc tgaactgcgt gcggtggtga
      361 ccgcgctgat gtgcggaccg cggagttgga gcgtcggttg gggtcgggca gtgatgactc
      421 cggaataccg acatcgaaag agccgatcgc ggccaaggcc cgacgcaacg ccgaacgcaa
      481 ggcccgtcgg gagcagggtc ggggtggttc gtcgcggcag cgctcggcgg accgatcacg
      541 gggtgggcag ccgggccatc ccgggcatgg cctgatgcgg gatccggatc cgcagcagtg
      601 ccaggaggta gacccaccgg cacagtgccg cggctgtgcg ggtgatctgg ccggggcggt
      661 ggatgctggg accggctggt cgcagatctg ggacgtgaag gtggtccggt ggcgcgccga
      721 gtatctgttg ccgcggcgac ggtgcgggtg cggaataacc accacggcct gcccgccggc
      781 cggtggggtg gtcaacgggg tcagttacgg gccggtgctc actgccgccg tggtggcgtt
      841 gagtgcgttc ggcaacgtgc cggtcgaacg cgccagcacc ctggtcgaga tcctgttcgg
      901 gcagcaggtg tcggccgggt tcctcgaccg ggccggtgcc cggctggccg agcggctggt
      961 cgccgccggg ttcagtcagg cgatgcaggc ggcgctggtg gccgaaccgg tgctgaccgc
     1021 tgacgaatca ccggtcgagg tgctcacccc agcccacgat cccgagacgg gccaacccgt
     1081 gccgggagcg ccgcacgtga tggtgatccg cactccggac gagcggctgg tgtggttgac
     1141 cgggctggtc tcccgcagct acgacacggt gatcgcggcg ctacgggcgt tcgccgggca
     1201 cctgatcgtc gacgggtacg gcgcctacca gcggctgctg acccaggccg gggccgtact
     1261 ggccgggatc cagcaatgct gcgcccacat catgcgccgc tgccggggcg tggccaagct
     1321 cggccccggc accctgcaat cgtcctggac cggcgacgtc accagcgccc tgaccgaggc
     1381 ccacgccgag gtcgaggccg ccaaggcccg ccggaagacc gtcctggacc cgggccggct
     1441 agccgcactg cgcgagcgct acgacaaggc ggtggacacc gggatcatcc acaaccgcca
     1501 ccgcgactgg gatggcgacg gcaaccatcc cgcgttcgtc ctggccacct ggttgaagac
     1561 ccacgccgag caggtctggc acttcaccga tcacttcgcc gtggactgga cctccaacgc
     1621 cgccgaacgc ggcgtcaaac ccgccaagcg acatcaagcc gtctccgggt actggcagac
     1681 caaccagacc ctggaccgat ggtgcttgat caactcgtat ctgacctccg cccacaacca
     1741 cggactgacc gtcctggacg ccatcacccg cgcccaggcc agtcgcccct ggctacccaa
     1801 accggtcgca ccgtagccac atccttcacg tcgccaaccc ctgaatggac acgccagttc
     1861 ccggcgtggt accagatcgc tagcgacgac agaatactcg agccacctat ccagaagatg
     1921 atggccaacc gagctgccgc gcccgatcac atcatctcca ttcgggctgg ccactgtccc
     1981 atgctgtcgc gccccgatga ggtggccaag ttcatcgagc aagcagctca tgacttcgcc
     2041 atgatgcccc acgcgtcctg atacag
//
LOCUS       DASVXZ010000573         1804 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_62932, whole genome shotgun sequence.
ACCESSION   DASVXZ010000573 DASVXZ010000000
VERSION     DASVXZ010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62932"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(400..1611)
                     /locus_tag="VF788_11920"
                     /pseudo
     CDS             complement(400..1611)
                     /locus_tag="VF788_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008736107.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISAzo13 family transposase"
BASE COUNT          259 a          604 c          591 g          350 t
ORIGIN      
        1 atatgcgatc taacaggcgg cggtggcgct caccccagct cgcggcagcg cggcgtcggc
       61 gcagcgccgc ggcgtactcg tcggccaccg attgtccgga cgatcggcta gggtgtggcc
      121 gttcggcttc gtgacggtgg cctgaacttt gtgaagcggg gcggtcgtgt gagggcggcg
      181 ccccgcttcg cgtcgggggg ctcatgccgc gccctcccgg gttgccttac gggcgcggcg
      241 tgccttcgcg ctggctagcg ctaggcgctg catgtgtgcc cggcgggcgg cctgggcgcg
      301 gcgtgcccgt tcggcgggcg gcagggtgtt gtcgggatca acctggcgct cgaacttagg
      361 gcctgccgat aaataacacg ctcgttaggt cgtggtggtt ggggtcaggg tgtagttcca
      421 ctccccgtgg aagtcgtggc ggtgcaggcc ttggtggtcg aggtcagtca tctcccgatc
      481 cgagatcttg atgccgctgg ggtagttagt ggtgtcgagg tcggcggaga cggtcagccc
      541 ggtgcgggtg ctagtcgcgg cgatggtctg cacgatcacc tcgtggctgg tcagcgggcg
      601 accgcgccag ttcattgaga tatggctgaa cagccggtgc tcaatcttgt tccacttgct
      661 ggtccccggg ggcagatggc agacagtgat ctcaagtccg gtcgcggtgg ccagtttggc
      721 cagttcgact ttccacagcc gggtgcggta cccgttggag ccaccaccgt cggcggtgat
      781 gagcagccgg cgggcatggg ggtaggcccg cgagccgacc tgctgccacc aggaccggat
      841 cgttgccacc gcgaactggg cggtgtcgtg atcgacgccc acgcttaccc agcccgtgtt
      901 cgtcccgagg tcatagaccc cgtaggggat cgccttgccc agctgcttgt ccataaagtc
      961 gtgcacattg acctgctcgg gctggccttg ccgcgtccac tcccgaccgg catttttgaa
     1021 ctccccgacc agttcttttt tcttggtgtc cacgctgatc accgggtcgc cggccgcgcg
     1081 atactcgctg acctgctcgc cgatgtagcg gaattgggcg tcgcggtcgg gatgctggcg
     1141 tccctcgatg gtcttcgcgt tgccctgcag gctgaagttc tcctgtcgca gcagcttggc
     1201 cacggtgtcg gccgagaccc gatgcccctg gctggccagt tcatcggcca gcctccgcgt
     1261 cgatttggtc gtccaccgta atgccgactc cgggtcgccc cgcgactcgg gctccaccag
     1321 cgacagcagc gccgccttaa gccccgggtc tgtctcgctc accggtttgc gaccagcccc
     1381 ggcccggcga acaccaccgc gcggcccgcc acctgcctcc aactcctgcg cccccgacgc
     1441 caccatctgg cgactcaccc ccgccgctgc cgccaccgcg gggatacctc catggcccag
     1501 cacccgggcc tccgaaccca gatacagccg acgttgccgc tcatccaggt gcggcagcaa
     1561 tgccgagaac tttgccccca gcgactcgac cacgtccaca gcaacggcca tatcacatca
     1621 tggcccacca tagacgaaat gttagcttta tttaccggcg agccctaaat cctaagtatg
     1681 aaggaaaggc ttctcgggac ctcggccgag cgtgaatgtc ctgccgccag tcttaagtag
     1741 ccgctgtgcg cgctgaacgc cggcatgagc ggctacgtat gcgtcccggt cggtatggcc
     1801 ttcg
//
LOCUS       DASVXZ010000574         2235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_511050, whole genome shotgun sequence.
ACCESSION   DASVXZ010000574 DASVXZ010000000
VERSION     DASVXZ010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511050"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1080)
                     /locus_tag="VF788_11925"
     CDS             complement(<1..1080)
                     /locus_tag="VF788_11925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX8934872.1"
                     /translation="MTGTPATRTAGTSTSVNEPSADVVILGGGSGGYACALRAAQLDL
                     RVILVEKDKLGGTCLHRGCIPTKALLQAAEVADAARDGHQFGVKTSLEGIDMGGINKY
                     KDGVVAKMFKGLQGLVSSRGITYVEGTGKFVAPNAVDVDGQRYIGRNIVLATGSYARS
                     LPGLEIGGRFVTSDQALNLDYVPDRVVVLGGGVIGAEFASVWRSFGAEVTVVEALPRL
                     VPAEDDFCSKQLERAFRRRGIAFKTGVRFTGAAQSDLGVTVNLESGEQLEADLLLVAV
                     GRGPNTAEAGYSEAGVRMERGFVFTDDRLRTNLPGVYALGDIVPGLQLAHRGFAQGIF
                     VAEDIAGRRPTPIDEDGIPRVTYCEP"
     gene            1263..1592
                     /locus_tag="VF788_11930"
     CDS             1263..1592
                     /locus_tag="VF788_11930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEX8934873.1"
                     /translation="MGVLDRLLGRQPAGTARAASTADVDHLDQWAASRRGVEAFVEPR
                     TAVTETTVVLVAHDGEWTRRRIDGAGGARRLGKRLGIPVYDVALVGYPQRMRDYTARL
                     RKREQQE"
     gene            complement(1602..>2235)
                     /locus_tag="VF788_11935"
     CDS             complement(1602..>2235)
                     /locus_tag="VF788_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016336073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEX8934874.1"
                     /translation="AAAVVVTAVLAARLELPVEVIATVPMAENMPSATAYRPGDVLTM
                     YGGTTVEVLNTDAEGRLILADALVRAAQDTPDYIIDTATLTGAQIIALGNRTPGIMGT
                     PEFRDRVTAISQQVGEGGWAMPLPEHLRSDLDSKLADIANVASHRWGGMLAAGLFLSE
                     FVPDGIPWAHLDIAGPAYNTGSPWGYTGKGGTGVPVRTLAAVLADIAERG"
BASE COUNT          374 a          736 c          756 g          369 t
ORIGIN      
        1 cggctcgcag taggtcaccc gcgggatgcc gtcctcgtca ataggggtgg gccggcgccc
       61 ggcgatatcc tctgcgacga agatgccctg ggcgaagccg cggtgcgcga gctgcagccc
      121 gggcacgatg tcgcccagtg cgtagacccc cggaaggttg gttcgtagtc ggtcgtcggt
      181 gaacacgaag ccgcgttcca tccgcacgcc ggcctcggag tacccggctt cggcggtgtt
      241 cggtccgcgg ccgaccgcta ccaacagcag atcggcctcg agctgttccc ctgactccag
      301 gttcacggtg acgcccaagt cggactgggc cgcgccggtg aaccgaacgc cggttttgaa
      361 ggcgatccca cgtcggcgga aagctcgctc caattgtttg gagcagaagt cgtcctcagc
      421 gggcacaagc ctgggcagcg cctcaaccac cgtcacctcg gcgccgaagg agcgccacac
      481 gctggcaaac tcggctccga tcacgccgcc gcccagcacc accacgcgat cgggcacgta
      541 gtccaggttc agcgcctgat cgctggtgac gaatcggccg ccgatttcaa ggccgggcag
      601 tgacctggcg taggaaccag tagcgagcac gatgtttcgc ccgatgtagc gctgcccgtc
      661 gacatcgacg gcattggggg cgacgaattt cccggtgccc tccacataag tgatcccccg
      721 ggacgacacc aacccctgca ggcccttgaa catcttggcg acgacgccat ccttgtactt
      781 gttgatcccc cccatgtcga tgccctccaa cgaggtcttc accccgaact gatggccatc
      841 gcgagcggca tcggcgacct cggccgcctg cagcagggcc ttggtcggga tgcagccacg
      901 gtgcaggcag gtgccaccca gcttgtcttt ctccaccagg atgaccctca gatctagctg
      961 ggccgcacgc agcgcgcagg cataaccgcc cgagccgccg ccgagaatga ctacgtcggc
     1021 ggatggctca tttactgagg tgctggtacc tgcggtgcgg gtagctgggg tgcctgtcac
     1081 ttcagacgct cctcaagctg acgtcggtaa cgtgggattt gggcgccagt gccatcttgt
     1141 caccaggccc ggcacgtcgg cgacgtgggc aagatcgcat cgcgccgcgg agtaatcgcg
     1201 cgggcacgtg cgttgagctg gcgcgagaca ccggagagac aggttgtgga ggaggtgccg
     1261 agttgggagt gctggatcgg ctcctgggca ggcagcccgc tggaacggcg cgcgccgcgt
     1321 cgaccgcgga cgtcgaccat ctcgatcagt gggcagcgtc tcgtagggga gtggaggcgt
     1381 ttgtcgagcc ccgcaccgcg gttaccgaaa ccactgtcgt gctggtcgcg cacgacggtg
     1441 agtggacccg gcgcaggatc gacggtgccg ggggcgcgcg ccggctgggc aagcggctcg
     1501 ggattccggt ctacgacgtt gccctggtcg gctacccgca gcggatgcgc gactacaccg
     1561 ctcgcctgcg caagcgggag cagcaggagt agcccagcgg atcaaccccg ttcggctatg
     1621 tccgccagga ccgcagccag ggtacgtact ggtacgccgg tacctccttt gccggtgtac
     1681 ccccagggtg agccggtgtt gtaggccggc cccgcgatgt ccagatgcgc ccaggggatg
     1741 ccgtcgggta cgaattcgga aaggaacaac cccgcggcaa gcatgccgcc ccagcggtgg
     1801 cttgccacat tggcgatatc ggccagcttg gagtcaagat ccgaccgcag atgttcaggc
     1861 agcggcatgg cccagccgcc ctccccgacc tgttgcgaga tcgcggtgac gcggtcgcgg
     1921 aactcagggg tgcccatgat gcccggagtg cggttgccta acgcgatgat ctgggcgccg
     1981 gtcaatgtgg cggtgtcgat gatgtagtcc ggagtgtctt gcgccgcgcg aaccagcgca
     2041 tcggcgagaa tcagccggcc ctcggcgtcg gtgttgagca cctcgacagt ggtgccaccg
     2101 tacatcgtga gtacgtctcc cggccggtat gcggtggctg agggcatgtt ctcggccatc
     2161 ggcacggtgg cgatcacctc caccggcagc tctagccgtg cggccagcac cgcagtgacc
     2221 accacggcgg ccgca
//
LOCUS       DASVXZ010000575         2240 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_63268, whole genome shotgun sequence.
ACCESSION   DASVXZ010000575 DASVXZ010000000
VERSION     DASVXZ010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63268"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            249..503
                     /locus_tag="VF788_11940"
     CDS             249..503
                     /locus_tag="VF788_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003059797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8934875.1"
                     /translation="MDWRDHAACRDEDPELFFPVGTSGPALLQIAEAKAVCGRCSVSS
                     ECLKWALALGQDAGVWGGLSEDERRALKRRNAGNGTRINA"
     gene            770..1099
                     /locus_tag="VF788_11945"
     CDS             770..1099
                     /locus_tag="VF788_11945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020663457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX8934876.1"
                     /translation="MIPGSPVFTLPEGIALLDVREDDEWTAGHAPQAIHVPMGQVSQR
                     VKEIAAAFPEPPVYVVCRSGMRSAQITAYLVGIGLDAVNVEGGMESWVADGRPLVAET
                     TAPPQVL"
     gene            1214..1786
                     /locus_tag="VF788_11950"
                     /pseudo
     CDS             1214..1786
                     /locus_tag="VF788_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          426 a          669 c          704 g          441 t
ORIGIN      
        1 cgggcagctc cctgatcagc ttggcagcgc cgaccgttga gctagcccgt tcaaccgacg
       61 gtcgtatgtc acggcagccg ttcggcgcgc gtcctggtcg cttcgccgca acagggtagc
      121 tactcgcagt aacagcagtg aagatcgtgg cccgaggcga tgcactgtcg cagatatcca
      181 caagatcaat gaccacggga cggcgccggg ataccggccg ttcgatagac cttaaggagc
      241 aaggaaccat ggactggcgt gaccacgcgg cctgtcgaga tgaggatccg gagctgtttt
      301 tcccagtagg gacgagtggt cccgcgttgc tgcagatcgc ggaggcgaag gctgtgtgtg
      361 ggcgctgttc cgtcagttct gagtgtctta agtgggcgct ggccttaggg caggatgctg
      421 gcgtgtgggg tggtctgagc gaggacgagc ggcgcgcgct caagcggcgc aacgcaggca
      481 acggaacccg catcaacgcc tgagcctgat agcgaccgga ctgggttgta ggtcgacttc
      541 gccccgcgga actccccgta ttctgtagct cggtccggac acccacaacg acaagcaaga
      601 cgagctgccg gacttttccc tcattgcctg tcaattggga gtgtccgagg aggatatgca
      661 cattgaccac acgcttccat tttcgcgaca gcatctgatt ggatcttgac tgtcaggcgc
      721 ggctcgggca gtcactgcgt gtccgcggga gacgtggcac gatcagcaca tgatccctgg
      781 ctcgccagta ttcacgttgc ccgaaggcat tgctctgctc gatgtccgcg aagacgacga
      841 gtggaccgcg ggacacgcac cgcaggcaat acatgtcccg atgggacaag tgtcgcagag
      901 ggtcaaggag atcgccgccg ccttccccga gcctccagta tatgtggtgt gccgctccgg
      961 gatgcgctct gctcagatca ctgcctatct ggtggggata gggctagacg cggtgaacgt
     1021 cgagggtggg atggaatcct gggtcgctga tggccgtccg ctagtggccg agacgaccgc
     1081 gccgccgcaa gtgctgtaac tgttgcattg aggcaatggg aatgtaacgt gacctggggt
     1141 ttcgttgact cgtctggcac tgttgcgtag accgatggca ggttcgggca ggctgtgttg
     1201 atgcgtcgtc acaatcgcgg ccgccagcgc cgcggtccac ttcgctggat tccggttccc
     1261 gccgccggag gtgatcgtgg tggcagtgcg ttggtgtttg cggttcggac tgtcgtaccg
     1321 cgacgtggac gagctgctgg ccgaacgcgg gatcgctgtc gaccacgtca ctgtctaccg
     1381 gtgggtgcag cgattcactc cgttgctgat cgatgcggcc aggccctgca ggcaggcgcg
     1441 gggtgatcgg tggtgcgtcg atgaaactgc catagaagtc gccgcgcgct ggatctaccc
     1501 gtaccgcgcc gcgggcacta cgaactcggc ccagacgcca atccacgaca tcggctccca
     1561 gcggtcttta ggcactcgcc cgcgcaatct agactggatg tcgtcagatg tcgacagcat
     1621 cgtgctttgt cgtggcttgg ctaacgcaac agtccctcga gatctggtgg tcatccatca
     1681 ggtcgcgctg accgagcagg ccaccaacgc ccgcaccgag ggcttcgacc gaatcatcaa
     1741 acaggtcaag cgtgtcggct gcggatttcg caacatggac agctaccaac gacgcatcat
     1801 cgcccacatc gcagtcaccc gaccgcgagg acaagctgca tgaccaggcg tcccgctgaa
     1861 atgcggagag ccgcttaaga gttggcggtg cgcgcacacg gactacagca gccccagata
     1921 acttatgccg cgcagccagt gccgtctaag taccccactt ctctacccta tgctttgcat
     1981 aagcatcaat ggttgtacgg ttaagtcccg cgtcgcggcc cttcctggac gcattggcga
     2041 cagcggacca ggatgtcctc atccgaggca tgggcctgct cttcctcccc cagcggggac
     2101 tagaaggtcc atctttggcc aagtctttga aataatggcc cgggcccaca ggtagctgac
     2161 acctggcctg gtcctcgttc tcgaataaac accaaagact gggcgattcg ttgtccacca
     2221 aactgaccgc atcgtttaaa
//
LOCUS       DASVXZ010000576         3812 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_928629, whole genome shotgun sequence.
ACCESSION   DASVXZ010000576 DASVXZ010000000
VERSION     DASVXZ010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_928629"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..772
                     /locus_tag="VF788_11955"
     CDS             194..772
                     /locus_tag="VF788_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020639402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8934877.1"
                     /translation="MGKIVISENVSLDGVVQDPTGEEGFRHGGWFNQVGDKDRAEWAK
                     VELEEALGAEALLLGRRSDEFLGTQWKGRYGEWADRLNSLPKYVVSSTLVDPEWSNST
                     VLKGDVVNEVSKLKQKLDGDIVVYASRQLVHTLMEHDLVDELRLMIYPFVLGAGERLF
                     GETSQKKSIRPLNIRAVGDDLVYLTYEIVRDA"
     gene            complement(930..1415)
                     /locus_tag="VF788_11960"
     CDS             complement(930..1415)
                     /locus_tag="VF788_11960"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934878.1"
                     /translation="MDAGADMLFDRDTTNCSIARTLEVVGEKWTLLILREVWYGASRF
                     SDVERMLGCPRNLLAERLRKLVEHGILSTEPYQEAGSRSRLRYVITPKGSDLVPAVLG
                     LLQWGDRYRADPAGPAIVTRHDKCGATLSVQIRCENDHHVQVSDIEAAPGPGFQMKKD
                     Q"
     gene            1558..2574
                     /locus_tag="VF788_11965"
     CDS             1558..2574
                     /locus_tag="VF788_11965"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020639636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX8934879.1"
                     /translation="MKAFVVERYGDADTVRAGDVPDPQVGDDDVLVRIRAASVNPLDL
                     KTRGGDLKAILPYRVPFVLGNDLAGEVVAVGASVTRFAVGDEVYARPNKNRIGTFAEL
                     IGIHQDDVAAKPTTLTMEEAASIPLVGLTSWQALVERANLQPGQKVLVHAGSGGVGTI
                     AIQLAKHLGASVATTTSTANIDLVRGLGADVVIDYKKQAFETILHDYDVVLDTLGGET
                     LDKSLQVLKPGGKVISIAGPPDPAFAKELGVNPVVRLAMTALSFRTRQRARRHHVTYE
                     FLFMKASGDQLREVTSLIDAGKIRPVVDRIFAFESTREALAYVEGGRAKAGKVVVRMK
                     PVLT"
     gene            2733..3323
                     /locus_tag="VF788_11970"
     CDS             2733..3323
                     /locus_tag="VF788_11970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934880.1"
                     /translation="MGDRQMRDRVGDQASIRGRVWPALEHLGGQTAKRVIGLWDKKED
                     LREPAAAREGHGEAGMTSDQPAHLTQPVLVEVLLRKEGINDRDVSRDARSRGRIELPA
                     PAPNDGLGSTNGNDDRSLSGSERHRCHGGRHSEKGDNAATQERPRRLRRPVDGLPQPG
                     LAIGDLLRSPAGARSKQRAAGVPAGTCALSAGYNVA"
     gene            3433..>3812
                     /locus_tag="VF788_11975"
     CDS             3433..>3812
                     /locus_tag="VF788_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005154867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase B"
                     /protein_id="HEX8934881.1"
                     /translation="MCGITGWVDFSRDLREQGPVLAQMVATMACRGPDAEGTWIAPHA
                     ALGHRRLSVIDIEGGRQPMSVDAQGRTVAVMTYSGEVYNYRELRAELASRGHRFRTQS
                     DTEVVLHAYLQWREDFADRLNGMYA"
BASE COUNT          731 a         1161 c         1279 g          641 t
ORIGIN      
        1 gtccccggtc cgcgcccgcc ttatcaggtc gcctgtcacc acgctcgcat caccttcctc
       61 ctgtaacccg ccgcatgtct acctcgtact gacaccggca gcggcgaact gggcggttga
      121 gcggcgccca gtttcccgat atcgcggcgt cttcattagt ggtggctgat aacaccaccg
      181 aaggagaacc gaaatgggaa agatagtgat cagcgagaac gtttcgcttg acggagtcgt
      241 ccaggacccc accggcgagg agggcttcag gcacggcggc tggttcaacc aggttggaga
      301 caaggaccgc gcagagtggg ccaaggtcga gctcgaggag gcgctgggcg ccgaggccct
      361 gctgttaggt cggcggagcg acgagttcct cggaacgcag tggaaaggac gctatggcga
      421 gtgggcggac aggttgaaca gcctgcccaa gtacgtcgtg tcctcgaccc tcgtcgatcc
      481 cgagtggagc aactcgacgg tcctcaaggg cgacgtggtg aacgaggtct cgaagctgaa
      541 gcagaagctc gacggggaca tcgtcgtcta cgccagccgt cagctcgtgc acacactgat
      601 ggagcacgac ctggtcgacg agttgcggct gatgatctat ccgttcgtgc tcggggctgg
      661 cgagcgcctc ttcggcgaga ccagccaaaa gaagtccatt cgccccctca acatccgggc
      721 cgtcggtgac gacctcgtct acctcaccta cgagatcgtc cgagacgcct aaacaaccga
      781 acagcggtgt cggccggcga gagactcctt tcgggcaccg ccctccgcgc gggcggtgcg
      841 gcatcacctg ccctggctgt cactggtgac atcgccacca accgccgcga cgagcaggga
      901 gtctcggtgg cctgactccg ctggtcgcct cactggtcct ttttcatctg aaagcctgga
      961 ccaggtgcgg cttcgatatc agacacctgg acgtgatgat cgttctcgca tcggatctgc
     1021 acggagagcg tggcgccgca cttgtcgtga cgggtgacga tggccgggcc cgccgggtcg
     1081 gcacggtatc ggtcacccca ctgcagcagt cctagcaccg ccggcaccag atcgctcccc
     1141 ttaggtgtga tcacgtatcg gagccgactg cgggaaccgg cctcctgata tggctcggtg
     1201 gacaggatgc cgtgctcgac cagcttgcgg agccgctcgg cgagcaggtt gcgggggcat
     1261 cccaacatgc gttcgacgtc gctgaagcgg gatgcgccgt accagacctc ccgaaggatc
     1321 agcagggtcc acttctcgcc cacgacttcc agggtccgag cgatcgagca gttcgtcgtg
     1381 tctcgatcga aaagcatgtc agcaccagcg tccattcacc catcctacaa gctaagttta
     1441 ctttttgata ctcaggatgt agcgttcata actgagacga ggctttggtt acagagcgct
     1501 gaaaggccag caaccttgcg cccggcatca gcggcgcggc gagaggtgga gagaacgatg
     1561 aaggcatttg ttgtcgagcg ctacggggac gccgacaccg tgcgtgctgg cgatgtgccg
     1621 gatccgcagg tgggcgatga tgacgtcctc gtccggattc gcgcggcgag tgtcaatccg
     1681 ctcgatctca agacgcgggg cggggatctc aaggcgatcc tgccgtaccg ggtgccgttc
     1741 gtcctgggca atgacctggc cggcgaggtt gtcgcagtgg gcgcgagcgt gacgcggttc
     1801 gcggtcggcg atgaggtcta cgcgcgcccg aataagaacc ggatcggcac attcgcggaa
     1861 ctcatcggga tccatcagga tgacgtggcg gccaagccca ccacgctcac catggaggaa
     1921 gccgcgtcca tccccctggt cggcttgacc tcctggcagg ccctagtgga gcgagcgaac
     1981 ctgcagccgg gccagaaggt cctcgtccat gcgggctccg gcggcgtggg caccatcgcc
     2041 atccagttgg cgaagcatct gggagcgagc gtggccacga ccacgagcac ggcaaacatc
     2101 gacctggtca gaggtctggg cgcggacgtc gtcatcgact acaagaagca ggctttcgag
     2161 acgatcctgc acgactacga cgtagttctg gacaccctcg gcggcgagac gctcgacaag
     2221 tcccttcagg tactgaagcc gggcgggaaa gtcatcagca tcgccgggcc acccgatccc
     2281 gccttcgcca aggagctggg agtgaatccc gtcgtcaggc tggcgatgac cgctttgagc
     2341 ttccgaacca ggcagcgcgc gcgacgccac cacgtgacgt acgagttcct gttcatgaag
     2401 gccagcgggg accaactgcg cgaagtcacc tccctcatcg acgccgggaa gatccggccg
     2461 gtcgtggacc gaattttcgc attcgagtcg acccgcgagg ccctggcgta tgtcgaggga
     2521 gggcgcgcca aggccggcaa agtcgtcgtc cggatgaaac ctgtgctcac gtgatcgtgt
     2581 gtgagatggg gaacacggag tggcagattc gcccgatgag cccaacgcct gccgtcggaa
     2641 ccgatcagcc atgcctcgtg gatggcgcag gtaaagggca ggcgggctgt cacatcggct
     2701 tcgacctcag ctgtctgcct cggggatgca ccgtgggtga tcgtcagatg cgggaccggg
     2761 tcggtgatca agccagcata cgggggcgcg tctggccagc gctggaacac ctcggcggtc
     2821 agacggcgaa acgggtcatc gggctctggg acaagaaaga ggacctcagg gaaccggccg
     2881 cagcgcgcga aggtcacggt gaagctggga tgacgagcga ccaaccggcg cacctcaccc
     2941 aacccgtcct cgtcgaggtc ctgctccgga aggaagggat aaatgatcgt gacgtgagcc
     3001 gggacgctcg cagccgtggc cggatcgagt tgcctgcgcc agcgcccaac gatgggctcg
     3061 gcagcaccaa cgggaatgat gatcgcagtc tgtccggcag cgaacgccat aggtgtcatg
     3121 gtggcaggca cagcgaaaaa ggcgacaacg cagcaacgca agaacgtcct cgccgcctac
     3181 ggcgacccgt tgatggtctc ccccagccgg ggctggcgat aggtgatttg cttcgatcgc
     3241 cggccggcgc tcgaagcaaa cagcgggccg cgggcgtccc cgcaggtacc tgcgcattat
     3301 cagctggcta taacgtggcg tgagcgttgt cacttcgcta cacccggtgg ggactggccg
     3361 tggactgcga gcaggaggaa cgtgagatgt tagcaaggct aacaagttga gaaccacaat
     3421 gggatgggcg tgatgtgcgg cattaccggt tgggtggact tttcccgtga cctgcgcgaa
     3481 caggggccag tgttggctca gatggtggcc acgatggcct gccgtggccc ggacgcggaa
     3541 gggacgtgga tcgcgccgca tgcggcgctc ggtcaccgac gactgtcagt gatcgatatc
     3601 gagggcggcc gtcagccgat gagcgtggac gcccaggggc gcacggttgc ggtgatgact
     3661 tacagcggcg aggtctacaa ctatcgggag ttgcgcgccg agctggccag ccgcgggcac
     3721 cggtttcgca cgcagagcga caccgaggtg gtattgcacg cctacctgca gtggcgggag
     3781 gacttcgccg accggctcaa cgggatgtac gc
//
LOCUS       DASVXZ010000577         3536 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_332621, whole genome shotgun sequence.
ACCESSION   DASVXZ010000577 DASVXZ010000000
VERSION     DASVXZ010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3536
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332621"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..989
                     /locus_tag="VF788_11980"
     CDS             171..989
                     /locus_tag="VF788_11980"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8934882.1"
                     /translation="MSSSTYLLAGRVSELERLKLQSRVWEPSGRRLLDEIGNGRGVRA
                     VDIGCGVMGSLRLLSQWVGADGEVVGTDIDDAMLAAATQFVAAEGLGNVALLNDDLFA
                     TRLEPSSFDLVHARFVLTPLGRGHEQMETYVRLLRPGGTVVFEDPDWGSWHFNPPAKA
                     CQKLIALICEAFARWGDAEAGRKHLELLRSVNIEGNVRAEVLALPPGHPYLRLPLQMC
                     IGLEPRLRSFMDTEELHQLNQEAENELQEPGRWGTTFTVIQSWGQWIRSVRGAP"
     gene            1303..2364
                     /locus_tag="VF788_11985"
     CDS             1303..2364
                     /locus_tag="VF788_11985"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8934883.1"
                     /translation="MTHTIDETALEAFLAKVINETGAAYNTVLVAIGDELGLYTALAG
                     SGPLSSKELATRTNTAERYIREWCNAQAASGFLRYDPPDGTYELPPEQAHVLADETSP
                     VHLAGLFQAAAAVFAMAPTITEAFRTGRGVGWHEHGHGLFEGTERFFRSGYRANLVSE
                     WIPALDGVEAKLHAGIRVADVGCGYGASTILLAKAYPNSMFIGYDYHEASIEAARRRA
                     ADAGVAARVRFEVAAATDYPGIFDAVAFFDCLHDMGDPVAAARHVRESLAPDGALMLF
                     EPAAADRVEDNLNPVGRLYYAVSTMVCTPASLAQDGRMALGAQAGPARLGEVLRVAGF
                     SRVREAARTPFNIVLEARP"
     gene            complement(2795..>3536)
                     /locus_tag="VF788_11990"
     CDS             complement(2795..>3536)
                     /locus_tag="VF788_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="heme peroxidase"
                     /protein_id="HEX8934884.1"
                     /translation="ATLLQLFTFTGTSGNFTPTTNQADLDNPDFGENLRLPTNWIVDW
                     RRLHDFKVPGTNLAAPVPPDGLRNEAKRIDTRLVNPLDHLPAGAFAGREQNLPQDDIQ
                     RNLAFRNLTRANMVKLASGQQMADFFRVKQLTPAEVLTGDGTGVNLTTEGQLSQAEQD
                     ALVASTPLWFYILREAELGGGRLGAVGGRIVAEVFHRAMEVSTFSIVRNPLWRPQFGP
                     DRNTFRMVDLLLFAFNNDLAGLNPLGDA"
BASE COUNT          607 a         1129 c         1178 g          622 t
ORIGIN      
        1 ccggcactag ttcacatcct gaacccgctg tcaccggtcc cccggtgcac gttccgacca
       61 aaccgaaccc acgccgtttg cgcgcccagg ttcagcattt gcactagtcg cggtcacgga
      121 aaccgggaca gtggagtcga tccctgaatt cacgggcgag aggagatgcc atgagttcat
      181 cgacctacct gctggccggc cgggtctccg agctggagcg gctcaagctc cagtcacggg
      241 tgtgggaacc cagcggtcgc cgccttctag acgagatcgg caacggtcgc ggtgtacggg
      301 ccgtcgatat cgggtgtggg gtaatgggat cgttgcggct gctcagccag tgggtcggag
      361 ctgatggcga ggtggtggga accgacatcg acgatgccat gctcgccgcc gccacacagt
      421 ttgtggccgc ggaaggcctc ggcaatgtgg cgctcctcaa cgacgatctt ttcgccacca
      481 ggctggagcc ctcttcgttc gacctggtgc acgcgaggtt cgtgcttact ccgctgggcc
      541 gtggccacga gcagatggaa acttatgtcc ggttgctccg ccccggcggc actgtcgttt
      601 tcgaagaccc cgattgggga tcctggcact tcaacccgcc ggcgaaggcg tgccagaagc
      661 tgatcgcact gatctgcgag gcgttcgcac gctggggcga cgccgaggcc gggcgcaagc
      721 atctcgagct acttcgcagc gtcaacatcg agggcaatgt gcgggccgag gtcctggcgc
      781 ttccaccggg acatccttac ttgcggctgc cgctccaaat gtgcatcggt ctggaaccac
      841 ggctgcggtc gttcatggac accgaggagc tgcaccagct caaccaggag gccgagaacg
      901 aacttcagga acccgggcgc tggggcacca cgttcacggt aatccagtcc tggggccagt
      961 ggattaggtc cgtgcgtgga gcaccatgac aagcgctgtt ggcgtgtggt gtcgagcaca
     1021 atcgaagatc atctcggacg ttgacgagat ggtccggctc gtggtgcagg agctcatcgg
     1081 ctgacgtggt tcatggctca ctccggatgg ccactgccga tgtgatgacc acccagaagt
     1141 actgccagcg agatcacgga gacatccacg atcagcgggt gtcctccggt atcacgggag
     1201 attggcccgc tctcattact aacgccaccg tgcggcgcgg gttcggcgag cccgcactcc
     1261 aaggtccggt tcaagctttg tgactgagca ccaggagaga ccatgacaca cacgatcgac
     1321 gagacagcgc ttgaagcctt cctcgccaaa gtgatcaacg agaccggagc cgcctacaac
     1381 acggtgctgg ttgcaatcgg tgacgagctc ggtctataca ccgctctagc tgggtccggt
     1441 ccgttgtcct cgaaggagct tgccacccgc accaataccg cggagcgcta catccgggag
     1501 tggtgcaacg cgcaggccgc cagcggcttc ctgcgctacg accccccgga cggaacctac
     1561 gagctgccgc cggagcaggc ccacgtgctg gctgatgaga ccagtccagt gcacctggcc
     1621 gggctcttcc aggccgcggc ggcggtgttt gcgatggcac cgacgattac tgaagccttc
     1681 cgcaccgggc gcggggtggg ctggcacgag cacgggcacg gcctgttcga gggcactgag
     1741 cgcttcttcc ggtccggcta ccgcgccaac ctggtgtcgg agtggatccc cgctctggac
     1801 ggggtggagg ccaagctgca cgccggaatc cgcgtcgccg acgtcggctg cgggtacggc
     1861 gcctcgacca tcctgctcgc caaggcctac cccaattcaa tgttcatcgg ctacgactac
     1921 cacgaggcct ctatcgaggc cgctcgacgc cgcgcggccg acgccggtgt agccgcgcgg
     1981 gtccgcttcg aggtcgccgc ggccactgac taccccggca tttttgacgc tgtcgcgttc
     2041 ttcgactgcc tgcacgacat gggcgaccca gtggccgccg ctcgtcacgt gcgcgagtca
     2101 ctggccccgg acggcgcctt gatgctcttc gagcccgcgg cggccgaccg cgtggaagac
     2161 aacctaaacc cggtcgggcg gctgtactac gcggtctcca ccatggtctg cacccccgcg
     2221 tcgctggctc aggacgggcg gatggcactc ggcgcccaag ccggtccggc ccgcctcggc
     2281 gaggtcctgc gagtggccgg gttcagcagg gtccgcgaag ccgcccgaac tccgttcaac
     2341 atcgtactgg aagcccggcc ttagcccacg ccgctccacg gaccaccaat cggcaatgac
     2401 caggacaggc cagccgcctg gactcgtatg acatcacgcc cccgcggcgt gacacgactt
     2461 gtgacgcgaa ctccgtccgc tgccgccgtt gtggccactc caacgatgac tgtagacatt
     2521 ggagtcgctg gtagccgcca tggtcaacgc gaagaataag tcttgtaagc ggtaggttcg
     2581 gggttcgagt ccccgcgtcg gcttcgattt accagcgaag atgagtcgct ttagtgatct
     2641 tgaatcgggg cagcggatcc tgaaccgctt atgggctcaa atcgacgcgc agcggaacgc
     2701 gcaccgcctg cactgtgcgg cgtaatgagc gggctcagcg gagttattcg acaccccggt
     2761 aacacacata gcccgctcat tacgctccag cgattcaggc gtcgccgagg gggttgaggc
     2821 cggcgaggtc gttgttgaag gcgaacagca ggaggtcgac catgcggaag gtgttgcggt
     2881 cggggccgaa ctgggggcgc cacagcgggt tgcggacgat ggagaaggtg ctgacctcca
     2941 tcgcgcggtg gaacacctcg gcgacgatcc ggccgccgac cgcgcccagc cggccgccgc
     3001 ccagctcagc ttcacgcagg atgtagaacc acagcggggt gctggccact agggcgtcct
     3061 gttcggcttg gctgagctga ccctcggtgg tcaggttcac gccggtgccg tcaccggtga
     3121 gaacctccgc gggggtcagt tgcttgacac ggaagaagtc agccatctgc tggccggacg
     3181 cgagcttgac catgttcgcc cgggtgaggt tgcggaaggc caggttgcgc tggatgtcat
     3241 cctgcggcag gttctgctcg cgcccggcga aggcgccggc gggcaggtga tccagcgggt
     3301 tgaccagccg agtgtcgatc cgcttggcct cgttgcgtag cccgtccgga ggaaccggcg
     3361 cggccaggtt ggtccccgga accttgaagt cgtgcagccg gcgccagtcc acgatccagt
     3421 tggtgggcag ccggaggttc tccccaaagt cggggttgtc caggtccgcc tggtttgtgg
     3481 tgggtgtgaa gttgccgctg gtgccggtga aggtgaacag ctggagcagg gtcgcg
//
LOCUS       DASVXZ010000578         3185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1375908, whole genome shotgun sequence.
ACCESSION   DASVXZ010000578 DASVXZ010000000
VERSION     DASVXZ010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1375908"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1176
                     /locus_tag="VF788_11995"
     CDS             <1..1176
                     /locus_tag="VF788_11995"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEX8934885.1"
                     /translation="LSSHIYGAPSTRLAVLGITGTAGKTTTAYFLEAGLRAAGAATGL
                     LGTVQLRIGEHNLPSRKTTPEAPDLQAVLALMVERGLSHVPMEVSSHSLALGRVAGTA
                     FAVGAFTNLSQDHLDFHSDLEDYFSAKALLFDGRAAAEVVCVDDAWGRRLVTCQTTTV
                     SLGGETTWHATDITAHPSGSQTFRACGPGGVDLPVSIRLPGAFNVANAVLALAVGHAA
                     GADPVLLAQGIATAEVPGRMQRIDRGQDFLALVDYAHKPAAVAALLDAVRAQVSGRLL
                     VVLGCGGNRDTAKRPLMGAEAARRADLLVVTDDNPRSEDPAAIRAAMLSGAQAGPADV
                     VEIPDRAVAIAHAVSHARAGDAVVVAGKGHEIGQEVCGVTYPFVDADVLADLLGART"
     gene            1173..2621
                     /gene="murF"
                     /locus_tag="VF788_12000"
     CDS             1173..2621
                     /gene="murF"
                     /locus_tag="VF788_12000"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEX8934886.1"
                     /translation="MIELTLTEVATAVGGVLHGCSGTEVVTGSVEFDSRRIKPGGLFV
                     ALPGERVDGHDFAATAMAAGAAGVLAGRPVDAAAVLAPVANGQPSGAYALAADTDGTG
                     AAVLAALAALARSVVHTLTRAGLQVVALTGSSGKTSTKDMVAALLTPLGPTVAPPGSF
                     NNEIGHPWTALRAGTSTRHLVLELSARGPGQISALCRVAPPLIGVVLNVGSAHLGEFG
                     SRDAVATAKGELVEALPAAGVAVLNADDAAVSAMDRRTEARVVRFGRSRAAQVRAIDI
                     TLDDRGCPSFRLVTPAGEARVGLAIPGEHQVSNALAASAVALELGASPAAIATVLGGY
                     RPVSRWRMEVTERRDGVTVVNDAYNANPESVAAALRTLVAISGANRRSWAVLGPLGEL
                     GGAAAQAYREIGALAADLRVDRLVAVGEQARPLHVAAAGSAPIWVPDVSAALELLASE
                     LATGDVVMIKASRAAGLERLAEGLLGLEGASR"
     gene            2618..>3185
                     /locus_tag="VF788_12005"
     CDS             2618..>3185
                     /locus_tag="VF788_12005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEX8934887.1"
                     /translation="MSTILVASGVALLASILFTPYLIRLFTRQGFGQEIRQEGPQTHQ
                     SKRGTPTMGGVAILLATWSGYLVAHLTVTRHGITASGLLVLLLTTVLGVVGFLDDLIK
                     VRRQRNLGLNKTAKLVGQLVAAVLFGILAMGFRDGDGISPASIHLSFVRDVAVVSFGV
                     VGFVVFSYLLVSAWSNAVNLADGLDGLAA"
BASE COUNT          437 a         1066 c         1124 g          558 t
ORIGIN      
        1 ctgtcgtccc acatctacgg tgccccctcc actcggctgg ctgtgctcgg gatcaccggc
       61 accgcgggca agaccaccac ggcgtacttc ctggaggcgg ggttacgcgc ggcgggagcc
      121 gctaccggtc tgctcggcac ggtgcaactg cggatcggcg agcacaacct acccagtagg
      181 aaaaccacac cggaggcccc ggacctgcag gcagtgctgg cgctgatggt cgaacgcggc
      241 ctcagccacg tgccgatgga ggtgtccagc cattcgctgg cgctgggccg ggtggccggc
      301 accgcctttg cggtcggcgc gttcaccaac ctctctcagg atcatctgga ctttcactct
      361 gacctcgagg actacttctc cgccaaagcg ctgctcttcg acggccgggc cgccgccgag
      421 gtggtctgcg tggacgacgc ctggggccgc cggctggtca cttgccagac cacaacggtc
      481 tcgctgggtg gcgagacgac atggcatgcc acggatatca ccgcccatcc ctccggcagc
      541 cagaccttcc gggcgtgtgg tcccggtgga gttgatctcc cggtgtccat ccggttaccc
      601 ggcgcgttca atgtcgcgaa cgcagtgctc gcactggccg ttggtcacgc cgctggggcg
      661 gatcccgtac tgctagccca gggcatcgcc accgccgagg taccaggtcg gatgcaacgg
      721 atcgatcggg gtcaggattt cctcgccttg gtcgattacg cacacaagcc cgctgcggtg
      781 gccgccttgc tcgacgcggt acgcgctcag gtttctgggc ggctgctggt ggtactgggc
      841 tgcggtggga atcgagacac ggccaaacgg cctctgatgg gtgctgaagc ggcccgccgg
      901 gcagatctac tggtggtcac cgacgacaat ccacggtcag aagaccccgc cgccatccgc
      961 gctgccatgc tttccggtgc ccaggcgggt cccgctgacg tggtggagat ccccgatcgc
     1021 gccgtggcca tcgcacacgc ggtgtcccat gctcgagctg gcgacgcggt cgttgtggct
     1081 ggcaaaggtc acgagatcgg gcaggaagtg tgcggcgtca cgtatccctt cgtggacgct
     1141 gacgtgctcg ccgacctgct cggggcgcgt acatgattga gctgaccctg actgaggtag
     1201 ccaccgcggt gggtggcgtc ctgcacggtt gctcaggcac cgaggttgtc accggcagtg
     1261 tcgagttcga ctcccgccgt atcaagcccg gcgggttatt cgtcgccttg ccgggcgagc
     1321 gggtcgacgg gcacgacttc gccgccaccg caatggccgc gggcgctgcc ggggtactgg
     1381 ctggtcgccc cgttgatgcc gccgcagtcc tcgctcccgt ggccaacggt cagccctcgg
     1441 gtgcctacgc gctggccgct gacaccgacg gcaccggtgc ggcggtgctg gctgcgctcg
     1501 ccgcgctcgc ccggtccgtg gtgcacacgc tgactcgggc cggcctgcag gtggtggccc
     1561 tgaccggttc gtcgggcaag acatccacca aggacatggt ggcggcgttg ttgactccgt
     1621 taggacccac cgtcgcgccg ccggggtcgt tcaacaacga aatcggtcat ccctggaccg
     1681 cgctgcgcgc cggaacgtcc acccggcacc tggtcttgga gctctccgcg cgcggccccg
     1741 gccagatcag cgcactgtgc cgggtggcgc cgcccttgat cggggtagtg ctcaacgtcg
     1801 gctcggcgca cctcggtgag ttcggttccc gggatgcggt ggctaccgcc aagggcgagc
     1861 tggtcgaggc gctccccgcc gccggggtcg cggtgctcaa tgccgacgac gccgccgtgt
     1921 ccgcgatgga ccggcgtact gaggcgcggg tggtgcgctt cgggcgctcg cgagcggccc
     1981 aggtacgagc gatcgacatc accctcgacg accgcggctg cccttcgttt cggctcgtga
     2041 ccccagccgg agaggctcgg gtagggctag cgatccccgg cgagcaccag gtctccaacg
     2101 cgttggcggc gtccgcggtg gccctggagc tgggtgctag cccggcggcc atcgccacgg
     2161 tgctgggcgg ctaccgcccg gtgtcgcggt ggcggatgga ggtcaccgag cgccgcgacg
     2221 gggtcaccgt ggtcaacgat gcctacaacg ccaacccgga gtcggtggcg gctgcgttgc
     2281 gaaccctggt cgcaatctcc ggagccaacc ggcgcagctg ggcggtgctg ggcccgctcg
     2341 gtgagctcgg cggggcagca gcgcaggcct accgggagat cggcgcgctc gcggcagatt
     2401 tgcgagtcga ccgactcgtg gcggtagggg agcaggctcg gccgctgcac gttgcggctg
     2461 ctggatcggc gccgatctgg gtgcctgatg tgtccgccgc actcgaactc ctggccagcg
     2521 aactcgccac cggggatgtg gtgatgatca aggcatcccg ggccgcgggg ctggagcgcc
     2581 tcgccgaagg actgctcggg ctggaagggg ccagcaggtg agcacgatcc tggtggcctc
     2641 cggggtcgcg ctgctcgcct cgatcctgtt caccccctac ctcatccggc tgtttacccg
     2701 gcaaggcttc gggcaggaga tccgacagga gggaccgcag acacaccaga gcaagcgagg
     2761 tacacccacc atgggtgggg tagccatcct gctggcaacg tggagcggtt acctggtcgc
     2821 tcacctcacc gtcacccggc atggcatcac cgcgtcgggc ctcctggtgt tgctgctcac
     2881 cacggtgctg ggtgtggtcg gcttcctgga cgacctgatc aaggttcggc ggcagcgcaa
     2941 tctcgggctg aacaagaccg ccaagctggt cgggcagttg gtagccgcgg tgttgttcgg
     3001 catcctcgcg atgggctttc gggacggaga tggcatctcc ccggcctcga ttcacctgtc
     3061 gttcgtgcgt gatgtggccg tggtctcctt cggtgtggtc ggcttcgtgg ttttcagcta
     3121 cctgttggtc tccgcctggt cgaacgcggt gaacctggcc gatggcttgg acgggctggc
     3181 ggccg
//
LOCUS       DASVXZ010000579         3149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_870997, whole genome shotgun sequence.
ACCESSION   DASVXZ010000579 DASVXZ010000000
VERSION     DASVXZ010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_870997"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VF788_12010"
     CDS             <1..225
                     /locus_tag="VF788_12010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934888.1"
                     /translation="ASAPDQGAGGSVPPSTVLVTRASRFIGGQLAARLAADPVIGRES
                     SRQLPSDEAAGSGDQNRGRRHAASRALIRR"
     gene            complement(229..330)
                     /locus_tag="VF788_12015"
     CDS             complement(229..330)
                     /locus_tag="VF788_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003402602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AURKAIP1/COX24 domain-containing protein"
                     /protein_id="HEX8934889.1"
                     /translation="MGSVIKKRRKRMSKKKHRKLLRKTRVQRRKLKK"
     gene            complement(452..658)
                     /locus_tag="VF788_12020"
     CDS             complement(452..658)
                     /locus_tag="VF788_12020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012795791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8934890.1"
                     /translation="MLSNEQAGPTKVQFLTVAEVAAMMRVSKMTVYRLVHAGELPAVR
                     VGRSFRVPEAAVHGYLENAYFDAG"
     gene            complement(799..1608)
                     /gene="proC"
                     /locus_tag="VF788_12025"
     CDS             complement(799..1608)
                     /gene="proC"
                     /locus_tag="VF788_12025"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006238144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEX8934891.1"
                     /translation="MTTIAVLGAGKIGEALLSGFLNAGRSPKDLMFTERYPERAAQLE
                     RTYQVRAVDTPTAARKAEVLIVAVKPQDIDPLLAELAEQVSSSTLIVSLCAGLPTALY
                     ERRLPDGVPVVRVMPNTPMLVGEAMSVVSAGRFATDVHLELTEELLGSVGTVVRVPES
                     QQDAVTALSGSGPAYFFYLVEAMIDAGILLGLPRPLVTELITQSAVGAAKMLRETGDH
                     PVLLREAVTSPGGTTIMAIRELERHRVRAALLDAIEAARDRSVELGAAHLD"
     gene            complement(1676..2608)
                     /locus_tag="VF788_12030"
     CDS             complement(1676..2608)
                     /locus_tag="VF788_12030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEX8934892.1"
                     /translation="MLRSLILAAAGSPAVRKLVATAPVSRYVVDRFVAGASAGRAVAV
                     SSVLVSDGLRVTLDHLGESVTDEAGAESTVAAYLELLGCLASEGLTSCVEASLKLSAV
                     GERLDEALALHHASRICAAAEQLGTTVTLDAEDHTLTESTLRIHAELRRKWPKTGAVL
                     QAQLRRTLEDCRALALVGARVRLCKGAYAEPSEVAFATSDEVAHSFVRCANLLLAAPC
                     YPMFATHDPRLIDIVSERAHWYGRLSDSFEYQMLYGVRPDEQRRLARAGYTVRVYLPY
                     GSDWYAYLTRRLAERPSNVAFFLRALLPSRDRSP"
     gene            complement(2757..2966)
                     /locus_tag="VF788_12035"
     CDS             complement(2757..2966)
                     /locus_tag="VF788_12035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934893.1"
                     /translation="MTAIILIEIVVGIVILAAAVRFVVRDIRQRSASDSEQGAEAATT
                     TEAPARASEPQPAQQLSEVGSTEAN"
     gene            complement(3028..>3149)
                     /locus_tag="VF788_12040"
     CDS             complement(3028..>3149)
                     /locus_tag="VF788_12040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010241344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEX8934894.1"
                     /translation="AKSGFSGTVVLEVSTRKARTRPERRALLIEALLFARLHL"
BASE COUNT          542 a         1044 c         1004 g          559 t
ORIGIN      
        1 gcttcagcgc ctgatcaagg cgcgggaggc agcgtgccgc cgtccacggt tctggtcacc
       61 agagccagcc gcttcatcgg agggcagctg gcggctcgac tcgcggccga tccggtgatc
      121 ggccgcgagt cgagccgcca gctgccctcc gatgaagcgg ctggctctgg tgaccagaac
      181 cgtggacggc ggcacgctgc ctcccgcgcc ttgatcaggc gctgaagcct acttcttcag
      241 cttgcgacgc tgtacccgag tctttcgcag cagcttgcga tgcttcttct tggacatccg
      301 cttgcggcgt ttcttgatca ccgagcccat gctcggcctc ctcgctgttc gtgaatggtg
      361 gtggatgcgt gcggtgcgcc cggcagcagg cgcgatcggc cgctcaggtt acccctggtc
      421 gcatccgcga agggcacccg acccgatcat ctcatcccgc atcgaagtag gcgttctcca
      481 ggtaaccatg cacggccgct tccggcaccc ggaaagatcg accgactctt accgcaggca
      541 gttcacccgc atgcactagc cgatagaccg tcatcttgga tacccgcatc atcgcggcta
      601 cctcggcgac cgtgaggaac tgcaccttgg tcggcccggc ttgctcgtta gacagcatgg
      661 gtcatcgcgt cctcaccacg tcgcgcgccg ctgggcttcc cctcccgcgg tccgtgacgc
      721 atttgttctg atgagagtag cgggactggt ggtggccgtg cgactcccat ccgttgaagt
      781 gaccattgat gtgtgacctc agtcaaggtg agcagctccg agttccaccg accggtcccg
      841 ggccgcttcg atggcgtcca gtaacgccgc acgcacacgg tgccgctcca actcccggat
      901 cgccatgatt gtcgtgcctc ccggagaggt caccgcctcg cgcaggagca ccgggtgatc
      961 accggtctcg cgaagcattt tggccgcgcc gacagcggac tgggtgatca gttcggttac
     1021 cagcggtctg ggcaatccga gcagaatccc cgcgtcgatc atcgcctcca ccaggtagaa
     1081 gaaatacgcc ggcccggacc cggacagcgc tgtgacggcg tcctgctggc tttccggcac
     1141 ccggaccacc gtgcccacgc tgcccagcag ttcctcggtc agctccagat gcacatccgt
     1201 ggcgaagcgg cccgcagata ccacgctcat cgcctcgccg accagcatcg gagtgttggg
     1261 catcacccgc accaccggca caccatcagg gagccggcgc tcgtagagcg cggtgggcaa
     1321 gccggcgcag aggctcacga tcaaggtgct cgagctgacc tgctcggcga gctcggccag
     1381 cagtgggtca atgtcctgcg gtttcaccgc gacgatcagg acctcggcct tgcgcgcggc
     1441 ggtgggtgtg tcgaccgcgc gcacctggta ggtgcgctcg agctgagcag cccgctcggg
     1501 gtagcgctcg gtgaacatca aatccttcgg gctgcggcca gcgttgagga agcccgacag
     1561 caacgcctca ccgattttgc cggcgcccag gacagcgatc gtggtcatgg cggcagggtg
     1621 ccagacgtcg acaacttgtg cgttccgggg acagaccgcg gtaatcaggg cttatttagg
     1681 gcgatctgtc ccgagaaggc agcaatgcgc gaaggaagaa ggcgacgttg ctgggtcgtt
     1741 cggcaagcct tcgggtgagg taggcatacc aatccgagcc gtagggtaaa tacacccgga
     1801 cggtgtaacc ggcccgagcc agccgtcgct gctcgtcggg gcgcacgccg tagagcatct
     1861 ggtactcgaa actgtccgaa aggcgtccgt accagtgggc ccgctcactc acaatgtcga
     1921 tcaggcgcgg gtcgtgcgtg gcgaacatgg gatagcaggg tgcggctagc agaaggttgg
     1981 cgcagcgcac aaagctatgc gcaacttcgt ctgaggtcgc aaacgcgacc tcagacggtt
     2041 cggcgtaggc acccttgcat agccgcaccc gggcacccac cagagccagt gcccggcagt
     2101 cctccagagt gcgacgcagc tgtgcctgca gcaccgcccc ggtcttgggc catttgcggc
     2161 gcagctcggc gtgtatccgt agggtggact cagtcagggt gtggtcttcg gcgtccaggg
     2221 tgacggtcgt accgagctgt tccgcggcgg cgcagatccg ggatgcgtga tgcagtgcca
     2281 gtgcttcgtc cagccgctca cctaccgcgg acagctttaa gctggcctcc acacagctgg
     2341 tcaggccctc cgacgccaag cagcccaaca gttcgaggta ggcggctacg gtggactccg
     2401 cgcccgcctc atctgtgaca ctctccccta agtggtcgag agtcaccctc agaccgtcgg
     2461 acaccagcac tgagctaacg gccaccgccc gcccagcgct tgccccggcc acgaagcggt
     2521 cgaccacata gcggctgacc ggggccgtgg ccacgagctt gcggacggcc gggctgcccg
     2581 ccgcagcgag gatcaatgat cgcagcacaa ccgagcacgc tagcgcgcgt catgatacgg
     2641 ccagcagaca gtgtccatag ccgctgcgtt cggccgggtc accttgagca gcaggcttgt
     2701 cgagcactgc tgctcaagct cagtactggg tgagccaggt tcgagcgtgc cggatgtcag
     2761 ttcgcctccg tcgagccaac ctcgctgagc tgctgtgctg gctgcggctc gctggcccgt
     2821 gccggcgctt ccgtggtggt cgcggcttcg gcaccttgct ccgagtcgga agcgctacgc
     2881 tgccggatgt ctcgaactac gaatcgcacg gccgcagcga ggatgacgat gccgacgacg
     2941 atttcgatca ggatgattgc ggtcatgaca agccactcct tcgatcggtg ctgatctgcc
     3001 ccgctgcact gagtgaccgt cccgtcacta caagtgcaag cgggcaaaga gtagcgcctc
     3061 aatcaagagg gctcgacgct ccgggcgggt acgggctttt cgggtactca cttcgagtac
     3121 cacagtgccg ctgaagccgc tttttgcca
//
LOCUS       DASVXZ010000580         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_422605, whole genome shotgun sequence.
ACCESSION   DASVXZ010000580 DASVXZ010000000
VERSION     DASVXZ010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422605"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..942)
                     /locus_tag="VF788_12045"
     CDS             complement(<1..942)
                     /locus_tag="VF788_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEX8934895.1"
                     /translation="MSKLATAVKRILVGRPFRSERLSHTLLPKRIALPVFASDALSSV
                     AYAPEQLFLILSVAGISAYSFAPWVGLVVAAVMLVVVTSYRQNVRAYPSGGGDYEVAT
                     GNLGGSAGLVVASALLVDYCLTVAVSISSAASNIGSALPFVATHKVSFAVAAIVVLTA
                     VNLRGIRESGTAFAIPTYAFMVGIVVMLAWGLIRVLLFGEPLRAESAGFGLRAEGTQL
                     VGFALAFLVLRAFSSGCAALTGVEAISNGVPAFQKPKSRNAATTLLLLGVISVTMLMG
                     LIVLAQLTGVKMAEDPARQLIGAPRGYEQKTLVAQIAQ"
     gene            1055..1717
                     /locus_tag="VF788_12050"
     CDS             1055..1717
                     /locus_tag="VF788_12050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEX8934896.1"
                     /translation="MHVVIMGCGRVGAGLAVALERLGHDVAVIDQNARAFRRLGADFH
                     GQQVRGSGFDRQVLIEAGIERAGAFAAVSSGDNSNIISARVAKETFGVAHVVARIYDP
                     KRAAVYERLGIPTVATVPWTTDRFLRMLLPDGVAAAWRDPSGTVAVLELPVHEGWAGR
                     TVGELEEHTGTRVAFIVRFGTAVLPGHNTVVQADDQVYAAAVSGTVTDVTTAASAPPP
                     SD"
     gene            1761..2426
                     /locus_tag="VF788_12055"
     CDS             1761..2426
                     /locus_tag="VF788_12055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEX8934897.1"
                     /translation="MRVTIAGAGAVGRSIAAELLEFGHQLMLIERDPDQLDPHAVEGA
                     EWILADACEVASLEEAGLEHSDVVIAATGDDKVNLVVSLLAKTEFAVRRVVARVNDPR
                     NEWLFTEAWGVDVAVSTPRMLAAMVEEAVSVGDLVRLMTLRQGQANLVEVTLPADTPL
                     AGRPVRQLLLPANAALVTILRGGRVIVPQDDDPLEGGDELLFVAAAEVEPEVRAALGA
                     RPA"
     gene            complement(2436..>2758)
                     /locus_tag="VF788_12060"
     CDS             complement(2436..>2758)
                     /locus_tag="VF788_12060"
                     /inference="COORDINATES: protein motif:HMM:NF022805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3159 domain-containing protein"
                     /protein_id="HEX8934898.1"
                     /translation="WYSLVAGVALMVSVVARRPLVGVLWSVLNGSGYGWRTNRRARFA
                     FDVATVVWAVVLLARFVVQRYLYDLQQTDLLGVARLVMGLPLTAVAAVVTIWAIRRTV
                     QLAS"
BASE COUNT          516 a          930 c          908 g          404 t
ORIGIN      
        1 ctgcgcgatc tgcgccacca acgtcttctg ctcgtagccg cgcggcgcgc cgatcagctg
       61 ccgcgccggg tcctccgcca tcttcacccc ggtgagctgg gcaagcacta tcagacccat
      121 cagcatggtc accgagataa cgccgagcag cagcagcgtg gtggcggcgt tgcgggactt
      181 cggtttctgg aacgccggca ctccgttgct gatcgcctct acaccggtga gtgccgcgca
      241 accggaggag aacgcccgca acaccaggaa cgccagcgcg aagccgacga gttgggtgcc
      301 ctcggctcgc aatccgaacc cggctgattc ggcgcgcagg ggctcaccga acaacaacac
      361 ccggatgagt ccccaggcga gcatcacgac gatacccacc atgaacgcgt acgtgggaat
      421 ggcgaacgcc gtccccgact cccggatccc gcgcaagttg accgccgtga gaacgacgat
      481 cgcggccacc gcgaaactca ccttgtgggt ggcgacgaag ggcagcgccg agccgatgtt
      541 cgaggccgcc gaggagatcg acaccgcgac ggtgaggcaa tagtccacca gcaacgcgct
      601 ggccaccacc aaccccgctg aaccgcccag gttccccgtc gcgacctcgt aatccccacc
      661 gcccgagggg taggccctga cgttttgccg gtaactggtg accacgacca gcatcaccgc
      721 ggcaaccacg agcccgaccc agggggcgaa cgagtacgcc gagatacctg ccactgagag
      781 gatgagaaag agctgctcag gtgcgtaggc gacggaagac aacgcatcag aggcgaagac
      841 cgggagcgcg atgcgcttgg gcaacagcgt gtggctgagc cgttcactgc gaaacggcct
      901 gccgacaaga atccgtttca ccgcggtcgc gagcttcgac actctcgaag cgtacggccg
      961 cgccgcggcc cgacgagaca ccgcagtctc atcggagata ccgtttgctg gcaatgccct
     1021 ggcaaccccc tagcaacacc ccgggagtga ccgcgtgcat gtcgtgatca tgggttgtgg
     1081 ccgggtgggt gccggtctgg cggtggcgct ggagcgactc ggccatgacg tcgcggtgat
     1141 cgaccagaat gctcgggcat tccgccggct gggtgccgac tttcacggcc agcaggttcg
     1201 cggcagtgga tttgaccgcc aggtgctgat cgaggcggga attgagcgag cgggcgcgtt
     1261 cgccgcggtg tccagcggtg acaactccaa tatcatctcg gctcgggtcg ccaaggagac
     1321 cttcggagtg gcgcatgtcg tcgccaggat ctacgacccc aaacgggccg cggtctacga
     1381 gcggctcggc atcccaaccg tcgcaacggt gccctggacc actgaccgct tcctacggat
     1441 gctgctaccc gatggggtgg ccgccgcatg gcgcgacccc tctggcaccg tggcggtact
     1501 ggagctgccg gtccacgagg gctgggctgg gcgtaccgtc ggtgagctcg aggaacacac
     1561 cggcacccgg gttgcgttca tcgttcgatt cggcactgct gtcctgcccg gccacaacac
     1621 cgtggtgcag gccgacgatc aggtctatgc cgccgcagtt tccggcaccg tcaccgatgt
     1681 caccaccgca gcatccgccc cgccaccgag cgactgaatc acgaattaag ccccaatact
     1741 ccaccgacct gggagccgcc atgcgcgtga cgatcgccgg agcgggcgct gtgggccggt
     1801 ctatcgcggc cgaactactc gagttcggcc accagctgat gctgatcgag cgggatcccg
     1861 atcaacttga cccgcatgcg gtcgagggtg ctgaatggat cctcgccgac gcttgcgagg
     1921 tagcttcgct ggaagaagcg gggctggaac attccgacgt cgtaatcgcg gccaccgggg
     1981 acgacaaggt caacctggtg gtgtcattgc tggccaaaac cgagttcgcg gtgcgccggg
     2041 tggtggcccg agtcaacgac ccgcgaaacg agtggctgtt caccgaagcg tggggggtgg
     2101 acgtcgcagt gtcgaccccg cgaatgctcg ccgcgatggt cgaggaggcc gtctccgtcg
     2161 gggacctggt gcggctgatg accctgcgac aaggccaggc aaatctggtg gaggtgacgc
     2221 tacccgcgga taccccgctg gccgggcggc cggtgcggca gttgttgctg cctgccaatg
     2281 ccgcgctggt cacgatcctg cggggcggcc gggtgatcgt cccgcaggac gacgatccgc
     2341 tcgaaggcgg cgacgagctg ctcttcgtcg cggccgcgga ggtcgaaccc gaggttcgcg
     2401 cggccctggg cgcccgcccg gcctagggag cgaacctagg aggccaactg caccgtgcga
     2461 cgaatcgccc agatggtgac cactgcagcc accgcggtca gcggcaagcc catcaccagc
     2521 ctggccaccc ccagcaagtc cgtctgctga aggtcataga ggtaacgctg gacgacgaaa
     2581 cgggccagca ggactaccgc ccagaccacc gttgcgacat cgaaggcgaa ccgggcgcgg
     2641 cggttggtgc gccagccgta gccggagcca ttgagcaccg accacagcac accgaccaac
     2701 ggtcggcgcg ccaccaccga caccatcaat gccaccccgg cgaccaagct gtaccaga
//
LOCUS       DASVXZ010000581         7145 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_871075, whole genome shotgun sequence.
ACCESSION   DASVXZ010000581 DASVXZ010000000
VERSION     DASVXZ010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7145
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871075"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..688
                     /locus_tag="VF788_12065"
     CDS             <1..688
                     /locus_tag="VF788_12065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934899.1"
                     /translation="GVSLTGLVWAQIFLFRRTHRVLNIGLVAASAAVLSGLVWWTGAV
                     VACVGPLNDSHRHSQSVSEALGSAQIAALQARTAESLELAHTGNATELDFNDRMQQLA
                     RHGGALDAARGLATDQLGRDLVQEAAKQASSYSSAHDKVRRLDDNTQYAEAVEAAVGT
                     GQTSAATAFDQLDKALITAVKHERGAFGSDIQHAQAMLTGLPLATAIFAIAAVAGAAL
                     GIRQRLEEYR"
     gene            685..1641
                     /locus_tag="VF788_12070"
     CDS             685..1641
                     /locus_tag="VF788_12070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX8934900.1"
                     /translation="MSLRSALAGCLLAAVILFATACSQPSTSLPPLPAAPARPPTLSP
                     PPLAAQECNRRVSLRPRDPLPAPGAMPSGSTMARIANRGYLIAGINQDTQAFSFRDDN
                     LRLQGFDVDIVRDIAESIFGDRERVVYRQLNIADRLTAVRSGEVDLVVATVSITCQRR
                     EQVDFSSVYLETGQRVLVNRGSGFADLAGLAGHRVCSSRGATGWATLQAAAPRLVPVG
                     VPATTDCLALMQLGQVDAVCADDTTLASLAVQDPRTEIVGPRITEESYGVAIKKDTPD
                     LVRFVNGLLERRAADGRWRASYQHWLTLLGPPPSPPAPQYQD"
     gene            1646..2047
                     /locus_tag="VF788_12075"
     CDS             1646..2047
                     /locus_tag="VF788_12075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934901.1"
                     /translation="MTTFTAAQGEAAAEQLASEQQAVIENLINLEDHPGRKLLNSIAL
                     EGMRLGRRAEVLDGVAELWLLYESYRSAAVRVRTIMARRSPPSRAAPRQVEERAHELL
                     WRAPCDLVTAAAAVAEYQDAVNARAINGSPA"
     gene            2044..4275
                     /locus_tag="VF788_12080"
     CDS             2044..4275
                     /locus_tag="VF788_12080"
                     /inference="COORDINATES: protein motif:HMM:NF028228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8934902.1"
                     /translation="MTACLKAGCGAPMGDDGYCTRCGTAARSPVTPPAAAAALSAPQP
                     STVQPAPALLTARRVSSQPVTRGPRRVSLISQIEEPVGGQIAPVLDDPQVPEHKRFCP
                     NSSCRHKVGRSSDGQAGRVEGSCPRCGTRFSFRPLLKPGLLVGDGQFKVEGAIAHGGL
                     GWVYRAWDCWVPRWVVLKGLIDPDDPDNRQAAVAELAALADADHPNIVNVLTVVKHPH
                     PLTGRDVDYIVMECLSGCSLKQLRQQRPDDDPYLPVEQVCAFALEVLAALDHLHVKRG
                     LLYCDLSADNVIHSPDGVKLIDLGAVRRIDDQDSPVWGKPGYQDPNIATYGPSIATDL
                     YTVARMMAVLSFPFPGFFTNGPIPNPDEAALLARHPSFAGLLRRATNPDPAQRFASAA
                     EMADQLEGVLREVRALQEGRPFPAASTLFGPELRVVGADPDTFPALTSDPGAVALALP
                     DPQADPADPHSGLLAAIIAERPEETERVLAALPDPSWETRLRVVRARIELRHRDTDDD
                     LDELAAAQPGDWRIDWYRGLNSLVTSDMDAARRHFTAVLDTLPGEIAPKLALALCAER
                     DGAAELAERHYATVWRTDRSYVSAAFGLARVRLNLGDLAGAATALETAPESSRYAATA
                     RLCAILARARGCVAGQPPVADLFTAAERLTALELDDRRRESAIAEVLEAVLDWERANR
                     PWPHGRTTSIPVSLLGHPLTERGVRDRLERAYRELARLAPTTAERVALVDKANDRRNR
                     SWT"
     gene            4272..5177
                     /locus_tag="VF788_12085"
     CDS             4272..5177
                     /locus_tag="VF788_12085"
                     /inference="COORDINATES: protein motif:HMM:NF025053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HEX8934903.1"
                     /translation="MTRGFCRVCAELVEYQDRYCEKCGAGAPGLRRDRIELSVGVAAG
                     VSDRGLRHHRNEDALALREVCQEPADRDAAVAIVCDGVSTSIRPEQASETAAEVAADA
                     LVAALRAEDGPVTATREAIHAAGRAVAGLARLDRGGAGHTAPACTFVSAVVTPDAVTV
                     GWVGDSRAYWIPQAGTGAAPTRLTRDDSWLAQVLAAGTLTPAQAAADRRAHAITAWLG
                     EDAAELDPHITTIEPEGPGVVVVCTDGLWNYLDAVEELAAALPAQALEAPLDAARSLV
                     EVALRCGGRDNITVAVLPFVAGGPS"
     gene            5174..5428
                     /locus_tag="VF788_12090"
     CDS             5174..5428
                     /locus_tag="VF788_12090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934904.1"
                     /translation="MTSTVEFRGVVHQNLYLVAEFAQVVDNLLKRLDEIYDPDTGTCR
                     LHRMSAQEKMSLDIESTKTTLLGRDQRLASARIQRAQWCY"
     gene            5489..6490
                     /locus_tag="VF788_12095"
     CDS             5489..6490
                     /locus_tag="VF788_12095"
                     /inference="COORDINATES: protein motif:HMM:NF039588.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX8934905.1"
                     /translation="MVENRVRVGGPYFEDLAHGQVFADAPGLTLTSGYAAVHQALSGD
                     RLRLPLDHQLSAAVTGRADPLAHPTLVCHVAIGQTTAPSQRVRGNLFYRGLRLLRPVF
                     LGDTLRTRTEIVALRQNRPKPGRAATGLAVLRVQVSNQRAEPVLDYWRCPMIPLRNPD
                     TDTGHADSFDHIPADVEPVEDLPWGWQLGAFRPTVAEPGTVYEIEVRETVTGAPELAR
                     ATLNLAATHTDPGASAYGRRLVYGGHTISIAGAHATRALPDLVTIVAWRSCDHTGPVF
                     EGDVLRTELHVEAVHSRDGYQLIDLRALVHACPASDAGDPTAADKPVLDWRFVALAR"
     gene            6502..>7145
                     /locus_tag="VF788_12100"
     CDS             6502..>7145
                     /locus_tag="VF788_12100"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX8934906.1"
                     /translation="MTGILAGMRVVEGSAFVAAPLGGMTLAQLGADVIRFDPIGGGLD
                     AHRWPVTAQGKSLFWAGLNKGKRSIAVDMRSPQGKELLTDLITAPGADAGLFLTNFPA
                     AGWLDYTKLASQRPDLIMVNIVGNPDGSSAVDYTVNPATGFAWTTGPGALSTPVNHLL
                     PAWDAITGTLAATGLLAAERKRRIEGTGQFVRLALADVALATVGHLGNIAEVQI"
BASE COUNT         1119 a         2430 c         2448 g         1148 t
ORIGIN      
        1 cggggtgagt ttgaccgggt tggtctgggc gcagatcttc ctgttccggc ggacacaccg
       61 ggtcctcaac atcggattgg tcgccgccag cgcggcggtg ttgagcggct tggtgtggtg
      121 gacgggtgca gtggtggcct gcgtcggccc gctgaacgac tcgcaccggc acagccaatc
      181 agtgtccgag gccctgggat ctgcacagat cgcagcgttg caggcccgta ccgccgagag
      241 cctagaactg gcccacaccg gcaatgccac tgagctggat ttcaacgatc ggatgcagca
      301 gctcgcgcgc cacggcggcg cattggacgc agcccgggga ttggccaccg atcagctggg
      361 ccgggacctg gtccaggagg ctgccaagca ggcgtcaagc tactcgtcag cccacgacaa
      421 ggtccggcgg ttggatgaca acacgcaata cgccgaagcg gtcgaggccg ccgtgggaac
      481 tggccagacc agtgccgcca ccgcattcga ccagcttgac aaggcgctca tcacggccgt
      541 taagcacgag cgcggagcat tcggcagcga catccagcac gcccaagcca tgctgactgg
      601 tctgcctctc gccactgcca ttttcgccat cgcagcggtg gcgggggcgg ccttgggtat
      661 ccggcagcgg ctggaggaat accggtgagt ctccgatctg ctctggcggg ctgcctgctg
      721 gctgccgtca tcctgttcgc aacagcgtgc agccagccgt caacctcgct gcccccgctg
      781 cccgccgcac cggcgcgccc acccacgctc tcacctccgc cgctggccgc gcaggagtgc
      841 aatcgccggg tcagcctgcg cccgcgagac ccgctgccgg cgcctggcgc gatgccgtcc
      901 gggtcgacga tggcccgtat cgcgaatcgt ggatatctga tcgccgggat caatcaggac
      961 acccaggcgt tctccttccg cgacgacaac ctgcggctgc agggtttcga cgtcgacatc
     1021 gtccgtgaca tcgctgagtc gatcttcggt gaccgtgagc gcgtggtgta ccggcagctg
     1081 aacattgccg atcggcttac agctgtgcgc tcgggtgagg tcgatctggt ggtcgccacg
     1141 gtgtcgatca cctgccagcg tcgggaacag gtggatttca gcagtgtgta tctcgagacc
     1201 gggcaacggg tgctggtgaa ccgtggctca ggcttcgcgg acctggccgg tctggccggt
     1261 caccgggtct gctcgtctcg aggcgcgaca gggtgggcaa cgctgcaagc tgccgccccg
     1321 aggcttgttc cggtcggtgt gccggccact acggactgcc tggctttgat gcagcttggc
     1381 caggtcgacg cggtgtgtgc cgatgacacc acgctggcca gcttggctgt ccaggatccc
     1441 cggaccgaga tcgtcggccc ccggatcacc gaggagtcct acggtgtggc gatcaaaaaa
     1501 gacactcctg atctggtgcg tttcgtcaat gggctactgg agcggcgtgc tgcggatggc
     1561 cggtggcggg ccagctacca gcactggttg acgttgctgg gtccaccgcc gtcgccgccg
     1621 gcaccgcagt accaggactg agaccatgac gaccttcacc gccgcgcagg gggaagccgc
     1681 cgccgagcaa ctcgccagcg agcagcaggc cgtcatcgaa aatctgatca acctggagga
     1741 tcacccggga cgcaagctgt tgaacagcat cgcgctggag ggcatgaggc tggggcgcag
     1801 ggccgaagtg cttgacggcg tggcggagct gtggctgctc tacgagagtt accgcagcgc
     1861 agcggtgcga gttcggacga tcatggcgcg acgctcccct ccgagccgag ccgcaccacg
     1921 tcaggtggag gagcgggctc atgaattgct gtggcgcgct ccctgcgacc tggtcaccgc
     1981 cgcggccgcg gtcgccgagt accaggatgc cgtcaacgca agggcaataa acgggagtcc
     2041 ggcatgaccg cgtgcctgaa agccggatgc ggcgcaccga tgggagacga tggctactgc
     2101 acgcggtgtg gaaccgccgc gagatcgccg gttacccctc cagcggccgc cgctgcgctc
     2161 tccgcccccc aaccgtccac agtgcagccg gcccccgccc tgctcaccgc tcgccgggtg
     2221 agttcccagc cggtaaccag gggaccgcgc cgcgtctcgc tgatcagcca gatcgaggag
     2281 ccagtgggcg gtcagatagc acccgtgctc gatgaccccc aggtgcccga acacaagcgg
     2341 ttctgcccga actccagttg ccggcacaag gtgggccgct caagcgacgg ccaggccggc
     2401 cgggtcgagg gctcctgccc gcgatgcgga accagattct ccttccggcc cctgctgaag
     2461 cccgggctgc tcgtcggtga cggccagttc aaggtagagg gcgcgatcgc ccacggtggg
     2521 ctcggctggg tttaccgggc gtgggactgc tgggtgccgc gctgggtagt gctcaaaggc
     2581 ttgatcgatc ccgatgatcc ggataatcgc caggcggccg tcgccgagct ggcggccctg
     2641 gctgacgccg accacccgaa catcgtcaac gtgctcaccg tggtcaagca tccgcacccg
     2701 ctcaccgggc gggacgtcga ttacatcgtc atggagtgct tgtccggctg ctcgctcaag
     2761 cagctgcgcc agcagcgccc ggacgacgat ccgtacctgc ccgtggagca ggtctgcgcg
     2821 ttcgccctgg aggtgctggc agcgctggat cacctccacg tcaagcgcgg cctgctgtac
     2881 tgcgatctct ccgccgacaa cgtgatccac tccccggacg gggtcaagct gatcgacttg
     2941 ggcgcggtcc gccggattga cgatcaggac agtccggtct ggggtaaacc cggctaccag
     3001 gaccccaaca tcgcaacgta cggcccgtcg atcgcgaccg atctctacac cgtcgcgcgg
     3061 atgatggccg tgctcagctt cccgtttccg gggttcttta ccaacgggcc gatcccgaac
     3121 ccggacgagg cagcactact ggcgcggcac ccgtccttcg ccgggttgct gcgccgcgcg
     3181 accaaccccg atccggccca gcggttcgcc tccgccgcgg agatggccga tcagctcgag
     3241 ggtgtgctgc gggaggtgcg ggcgctgcag gaagggcgac cgttcccggc cgcttccacc
     3301 ttgttcggcc cagagctgcg cgtggtcgga gccgacccag acaccttccc cgcgctgacg
     3361 tccgacccag gtgcggtcgc gctggccctg ccggatccgc aggccgatcc cgcggacccg
     3421 cactccggtc tgctggccgc gatcattgcc gagcgacctg aggagaccga acgggtactc
     3481 gcggccttgc ccgacccgtc atgggagacg cggctacgcg tggtgcgcgc ccgcatcgag
     3541 ttacgccatc gcgacaccga tgacgatctt gacgagctcg cggccgcaca gccgggggac
     3601 tggcggatcg attggtatcg tggcctcaac tcgctggtca ccagtgacat ggatgcagca
     3661 cggcggcact tcacagcagt gctggatacc ctgccggggg agatcgcacc caagctcgcc
     3721 ctggcgcttt gcgcggagcg cgatggtgcc gccgagctcg ccgagcgcca ctacgcgacc
     3781 gtgtggcgca ccgaccggtc gtacgtaagt gccgcattcg ggcttgcccg ggtccggttg
     3841 aacctcggcg acctcgccgg tgcggccacc gcgctggaaa ccgcgccgga aagttcccgc
     3901 tacgctgcca cggcccggct ctgtgcgatc ctggcccggg cccgtgggtg cgtggctggt
     3961 cagcctccgg tcgccgacct gttcaccgcc gccgagcggc taaccgcgct ggaactcgac
     4021 gaccgtcggc gcgagtcggc aatcgccgag gtgctcgagg ccgtgcttga ctgggaacgc
     4081 gctaaccggc cgtggccgca cgggcggacc acatccattc ctgtcagcct gctcggccat
     4141 ccgctcaccg agcgcggtgt gcgggaccgg ctcgaacgcg cgtaccggga actggcccgg
     4201 ttggctccca ccactgccga acgggtcgcc ctcgtggata aggccaacga ccgccgcaac
     4261 cggagctgga catgacccgc ggtttctgcc gtgtctgcgc ggagctggtg gagtaccagg
     4321 accggtattg cgagaaatgc ggcgctggag cgccgggtct gcgccgggat cggatcgagc
     4381 tgagcgtcgg agtcgccgcc ggagttagtg atcggggtct gcggcatcac cgcaacgagg
     4441 acgccttagc actgcgcgag gtgtgccagg aaccggccga ccgggacgcg gcggtggcga
     4501 tcgtgtgtga cggtgtgtcg acatcaattc gtcccgagca ggcgtccgag accgccgccg
     4561 aggtggccgc ggatgcactg gtggcggccc tgcgtgccga ggacggtccc gtgaccgcaa
     4621 cacgtgaggc gatccatgcc gccggtaggg ctgtcgcggg actggcacgt ctcgaccgag
     4681 gtggagctgg tcacacagca ccggcgtgca ccttcgtctc cgctgtcgtc actccggacg
     4741 cggtgacggt tggctgggtg ggggacagtc gcgcgtactg gataccgcag gccggtaccg
     4801 gcgcggcgcc gacccggctc accagggacg actcctggct ggcccaggtg ctcgcagccg
     4861 gaacgctgac tccggcccag gccgcggccg accggcgtgc acacgccatc acggcgtggc
     4921 tgggtgagga cgccgccgag ctcgatccgc atatcaccac gatcgaaccc gagggtcccg
     4981 gcgtggtggt ggtgtgtacc gacgggctgt ggaactacct cgacgctgtc gaggagctcg
     5041 cagcggcgct ccccgcgcag gcactcgagg ccccgctgga cgctgcgcgc tcgctcgtcg
     5101 aggtcgcatt gcgctgcggt ggccgtgaca acatcaccgt cgccgtgctc ccgttcgtgg
     5161 caggaggacc gtcatgacca gcactgtcga gttccgcggc gtggtgcacc agaacctgta
     5221 tctggtggcc gagtttgccc aggtggtcga caacttgctg aagcgtctcg acgagatcta
     5281 cgaccctgac accggcacct gccggctgca ccgcatgagc gctcaagaga agatgagcct
     5341 ggacatcgaa tcgacgaaga cgacgctgct gggccgcgat caacggctgg catcggcccg
     5401 cattcagcgg gctcaatggt gttattaggg cccttgtcac cccgctgagc ccgcggagtg
     5461 cgtcgcgggg gccgtacgat ctggtgcgat ggtggagaac cgggtgcggg tcggtgggcc
     5521 gtattttgag gatctggcgc acgggcaggt cttcgccgat gccccgggat tgacgctgac
     5581 ttcgggctat gcggcggtgc accaagcgtt gtccggtgac cggctccggc tgccgctgga
     5641 tcaccagctt tccgcggcgg tcaccggccg ggccgatccg ctggcccatc ccacgctggt
     5701 ctgccatgtg gccatcgggc agaccacggc accgtcgcag cgggtccgcg gcaacctgtt
     5761 ctaccggggc ctacggctgc tgcgcccggt gttcctgggc gacaccttgc gcactcgcac
     5821 agagatcgtc gcgctgcggc agaaccgccc gaagccggga cgggcagcga ccggcctcgc
     5881 ggtgctgcgg gtgcaggtca gcaaccagcg cgcggaacct gtactcgact actggcgctg
     5941 cccgatgatc ccgctccgta atccggacac cgacaccggg cacgccgaca gcttcgatca
     6001 catcccggct gacgtcgagc ccgtcgagga cctgccgtgg ggatggcagc tcggcgcgtt
     6061 ccggccgaca gtggccgaac ccggcaccgt ctatgagatc gaggtccgcg agaccgtgac
     6121 aggtgcccca gagctggcca gggccaccct caacctcgcg gccacccaca ccgatcccgg
     6181 ggcatcggcc tacgggcgtc gcctggtcta tggcgggcac accatctcca tcgccggggc
     6241 tcatgccacc cgggcgctgc ccgacctggt gacgatcgtg gcctggcgca gctgtgacca
     6301 caccggaccg gtgttcgagg gcgacgtcct gcgcaccgag ctgcatgtcg aggccgtcca
     6361 ctcccgcgac ggttaccagc tgatcgacct tcgagcgctg gtgcacgcct gccccgcgtc
     6421 cgacgctgga gatccgactg cagcggacaa gccggttctc gactggcgat tcgtcgcgct
     6481 ggcacggtga acgaggtgca gatgaccgga atcctggcgg gaatgcgggt agtggagggc
     6541 tcggccttcg tggcagcgcc gctcggcggg atgaccctgg cacagctcgg tgcggatgtg
     6601 atccggttcg acccgatcgg cggcggcctg gacgcccatc gctggccggt caccgcgcag
     6661 ggcaagagcc tgttctgggc gggtctgaac aagggcaaac gctcgatcgc ggttgacatg
     6721 cggtcaccac agggtaagga gctgctcacc gatctgatca ccgcacccgg tgcggatgcg
     6781 gggctgttcc tgaccaactt cccggccgcg ggctggttgg actacaccaa gctcgccagc
     6841 cagcgccctg atctgatcat ggtcaatatc gtcggcaacc cggacggctc gtccgcggtc
     6901 gattacacgg tcaaccccgc caccggcttc gcctggacca ctgggccggg tgcgttgtcc
     6961 acgccggtta atcacctgtt gccggcctgg gacgcgatca ccggcacatt ggccgcgacc
     7021 ggactactgg cagccgagcg caagcggcgg atcgagggca cgggccagtt cgtccggctc
     7081 gcactcgccg atgtggccct ggccacggtc gggcacctcg gcaacatcgc cgaggtacag
     7141 atcaa
//
LOCUS       DASVXZ010000582         2623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1229613, whole genome shotgun sequence.
ACCESSION   DASVXZ010000582 DASVXZ010000000
VERSION     DASVXZ010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1229613"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VF788_12105"
     CDS             <1..426
                     /locus_tag="VF788_12105"
                     /inference="COORDINATES: protein motif:HMM:NF014006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HEX8934907.1"
                     /translation="RDEPGLLAVIRTHSAPLYCYPAAELDAVDVPHPSEPVRGHVGTR
                     SVAEAAALLAARELGGGSLIVPKQRGEQVTVAVAALHPLSISSACTACGACLRTCPER
                     ALRAAPLRPVVVAVRCTSCGECMEICPTDAITLWDMRGG"
     gene            523..708
                     /locus_tag="VF788_12110"
     CDS             523..708
                     /locus_tag="VF788_12110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934908.1"
                     /translation="MAGPVAFLAKEAVIDMVLGEFGLPGQVMEEDPPTHTQQCTDQRD
                     RNLGVSPVAVLDSGGDN"
     gene            1205..1498
                     /locus_tag="VF788_12115"
     CDS             1205..1498
                     /locus_tag="VF788_12115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UBP-type zinc finger domain-containing protein"
                     /protein_id="HEX8934909.1"
                     /translation="MNQCSHLDEIELAPPSSDGCVECLRIGSGWVHLRRCASCGHVGC
                     CDSSPHRHATGHFRSTAHPLIQSFEPGEEWYWCYVDDVAFEIPGQAPSPSHPV"
     gene            complement(1768..2262)
                     /locus_tag="VF788_12120"
     CDS             complement(1768..2262)
                     /locus_tag="VF788_12120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEX8934910.1"
                     /translation="MDWSRDALMERGFTGFVPLAELLSTDVPTGPGVYVVWRPVSVEP
                     TFVETSSAGWFKGKDPSVLAEELRSAWVPGAEVVYIGKAGGLRRRLNEYRHHGAGQRV
                     GHWGGRYIWQLADANLLLVAWQLTADLDPEDVESRLIVEFVTSYGQRPFANLKAGSVP
                     PKVT"
     gene            complement(2376..>2623)
                     /locus_tag="VF788_12125"
     CDS             complement(2376..>2623)
                     /locus_tag="VF788_12125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8934911.1"
                     /translation="LVADERVADSFVAPGDEVERLNYGWSVLHCLPATRATSPVVANG
                     TVLRSTTVRQWAGEAGFSRVEELPIAHDFWRFYRLEG"
BASE COUNT          476 a          868 c          848 g          431 t
ORIGIN      
        1 cgcgacgagc ccgggctgct cgccgtgatc cggacacaca gcgcgccgct gtactgctac
       61 ccagccgccg agctcgacgc ggtcgacgtg ccccatccca gtgaaccggt ccgcggccac
      121 gtcggcactc gcagcgtcgc cgaggcagcc gcactactcg cggcccgaga gctcggcggt
      181 ggatcgctga tcgtgcccaa gcaacgcggc gagcaggtca ccgtcgcggt tgccgcgctg
      241 cacccgctat cgatcagctc ggcgtgcacc gcctgcggag cttgcctgcg cacctgcccg
      301 gagcgtgctc tgcgggcagc tccactgcgc ccagtggtcg tcgcggtccg ctgtacctcc
      361 tgtggggagt gtatggagat ctgccccacc gacgcgatca ccctgtggga catgcgcggt
      421 ggctgaggct gacctcatcc tcttgtgctg cgatggccgc cacacgggtg cccgaggcag
      481 gtccgtcaga ggatccccgc gctgccatga cgatggtggg gagtggccgg cccggtggcg
      541 ttccttgcca aagaagctgt catcgacatg gtcctcggtg agttcgggct gccgggccag
      601 gtaatggaag aagacccacc aactcataca cagcagtgca ccgatcagcg cgaccgcaac
      661 ctgggagtca gcccggttgc cgtcctcgat agcggtggag acaactgagg tggggaaagg
      721 cagcagcgcg gtggtggcga caacgccgag gttcgtccaa tgtaggccgc ggttcatcgc
      781 ccgcactcgg gtgaacacgt tttcgggcgc cgtcgtacac aactgccttc acgattactc
      841 ctccgcttat ttcgctcagt gaggtcggtc gtttcccgta gggcacgatt ctgcagcggg
      901 ggcatcggcg gacgcaccgg cccgctggca ccacgcggga ggtcgagtgg tcctgacagg
      961 gcaggcgcca gctacgacgg tgtcggtgag ttatgttgcc ggctaggtac ctcgcgcacc
     1021 atgacctggc agcggcaacg gcaagccgga tttcgtcact gcgggtggag ccggcggccc
     1081 gccgacttcg cgagtgtcgg aggtagcgcg gctcaccgac cacataatcc tgctatgcgg
     1141 ctgctgcggg tagctgagcc aacagcaccg gtcgtatcgg atggtgtgtt gaaggaggaa
     1201 cgcgatgaac cagtgcagtc accttgacga aatcgaactc gccccgccga gcagcgacgg
     1261 gtgcgtggag tgcctccgga tcggttcggg atgggtgcac ctgcgccggt gcgcgagctg
     1321 cgggcacgtc ggctgctgcg attcgtcgcc ccaccggcac gcaaccggcc acttccgcag
     1381 cacggcgcat ccactcatcc agtcgttcga accgggcgag gagtggtact ggtgctatgt
     1441 ggatgacgtg gccttcgaga ttcccggtca agcgccgagc ccgtcgcacc cggtgtagtc
     1501 gacgccatga cacaagtgac agaggagcgc gacgatgacc tcgcagccca gcgactgagg
     1561 taccggcatg ctctcccggc tgaagctacc ctgatcagcc gagcagagac gtttctcgat
     1621 cggttgatgg ctgcaccacc gatcgtaacc ggagcgcggc acggagagcc taccgggacg
     1681 catgcggtac gaagaacgca ctggccctcg ctcaactcaa gcaatgccat agcgccagct
     1741 tgggccgatc gtcggcagcg agccgaatta cgtgaccttc gggggaacac tcccagcttt
     1801 aaggttggcg aacgggcgct gaccgtagct cgtaacgaac tcaacgatga gtcggctctc
     1861 gacgtcctca ggatcgagat ccgctgttag ctgccaggcg acgagcagta gattggcgtc
     1921 cgctagctgc cagatgtaac ggccacccca gtggccgact cgctgccccg caccatggtg
     1981 acggtactcg ttgagacgcc tgcgcaggcc accagccttt ccgatgtaga ccacctcagc
     2041 gccgggtacc caggcgctcc gcaactcctc tgccaagacc gatggatcct tgcccttgaa
     2101 ccacccagcc gagctcgtct cgacgaaagt gggttcgacg ctcacgggtc gccacacgac
     2161 gtagactccc ggcccggtcg gaacatcggt ggatagcagc tcagcaagcg ggacaaagcc
     2221 ggtgaagccg cgctccatca atgcgtctcg actccagtcc attgattcat cctggccgag
     2281 tcgagcatcg acaccgagca caggacgcag acagaaggtg gctggacgtc aacaagtggg
     2341 ggatcgaccg tgatccttca actcgccggt tgcagtcagc cctccagccg gtagaaacgc
     2401 cagaagtcat gggcgatcgg cagctcctcg acacgcgaga agcccgcttc gcccgcccac
     2461 tgtcgcaccg tcgtcgagcg cagcacggtg ccgttggcca ctaccggcga ggtggcccgc
     2521 gtggcgggca ggcagtgcag cacgctccac ccgtaattga ggcgttccac ctcgtcaccg
     2581 ggcgcgacaa aactgtcggc gacgcgctcg tcggccacca gca
//
LOCUS       DASVXZ010000583        10768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_512021, whole genome shotgun sequence.
ACCESSION   DASVXZ010000583 DASVXZ010000000
VERSION     DASVXZ010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10768
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512021"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..905
                     /locus_tag="VF788_12130"
     CDS             <1..905
                     /locus_tag="VF788_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEX8934912.1"
                     /translation="ARTVIRAGEKLPLMLAAAQLGITISSLVLGSLGEPAVAHLLEWL
                     TGPLGVPDAVLHTIAFVVALGIVTVAHILLGEMVPKNIAIAGPERTALWMVPPLVAFM
                     RVTRPVIALFSQAARLVLHLFGVAPRDELDSAYSPDELANLIADSSREGLLDSQEHRR
                     LTQTLSTRERTVADVLVPISRLTTVPAEPTLGDIERAVAQTGFSRFPLRTSSQLMGYL
                     HVKDVLPLLGKPPDTPVPSSSARPLPEVPVSARFEEALALLRRSRSHLARVVDTDGST
                     LGVIALEDLVEEYVGTVRDGTHVS"
     gene            complement(940..3789)
                     /gene="gcvP"
                     /locus_tag="VF788_12135"
     CDS             complement(940..3789)
                     /gene="gcvP"
                     /locus_tag="VF788_12135"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HEX8934913.1"
                     /translation="MNVPNRRSLSELEHGTPFADRHIGPRPADLARMLEIIGVQSLEE
                     LAQLALPAALADAEAIPDLPAPATEVQALAELRERAMRCQPRVPMIGMGYHGTVTPPV
                     IRRSVLENPAWYTAYTPYQPEISQGRLEALLNFQTMICDLTGLAVANASLLDEATAAA
                     EAMTLLHRADRGSSARFVVDADTLPQTLAVLATRAEPLGIELDVTDLSRRLPDGDFFG
                     VLLSYPGVSGAICDHARLITQAHQRGTAVAVAADPLALTLLVPPGELGADVAFGSTQR
                     FGVPLGFGGPHAAYLAVRASLARQLPGRLVGVSRDADGSPALRLALQTREQHIRREKA
                     TSNICTAQVLLAVMASMYAVYHGSEGLRDIAYRAHRMAAVLAAGLRDGGVEVAPEAFF
                     DTVLARVPARAAEVVHAARVAGIDLRLADVDHVGISCAETTTREHLRTVWEAFGVPAA
                     DPDVLDREIPDTIPVALRRSSSFLTHPVFSAYRSETALLRYLRTLADKDMALDRSMIP
                     LGSCTMKLNATAEMEPISWPQFAQLHPFAPREDAQGLLEVVSDLERWLAALTGYDAVS
                     MQPNAGSQGEFAGLLAIRAYHRSRDEAGRDICLIPSSAHGTNAASAVMAGMRVVVVGC
                     DDKGDVDLDDLRVKTAKHGAELAAVMITYPSTHGVYEPGVAQVCDLVHEAGGQVYVDG
                     ANLNALLGLARPGRFGADVSHLNLHKTFCIPHGGGGPGVGPIGVRAHLAPFLPGHPET
                     QPDAVVGPVSAAPWGSASILPISWAYIRMMGAVGLRRATLTAVASANYVARRVGGYFP
                     VLYAGRNGLVAHECILDLRSITKATGVTVQDVAKRLADYGLHAPTMSFPVADTLMVEP
                     TESESRAELDRFCDAMIAIRDEIDRVAEGEWPADDNPLHCAPHTASCLTDKWDHPYSR
                     ELAAYPMGRTAVKVWPPVRRVDQAHGDRNLVCSCS"
     gene            complement(3994..4530)
                     /locus_tag="VF788_12140"
     CDS             complement(3994..4530)
                     /locus_tag="VF788_12140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8934914.1"
                     /translation="MFPESVLADPHGITDHLLGYRGPAACQIAGITYRQLDYWARTNL
                     VAPSIRGASGSGSQRLYSFKDILVLKVVKRLLDTGVSLQNIRVAVEHLRRRGVHDLAR
                     ITLFSDGTTVYECTSPEEVVDLLQGGQGVFGIAVSGAMKEIAGSISRFPPERADGGHV
                     EPAPEDELTKRRRARRIS"
     gene            complement(4843..5316)
                     /locus_tag="VF788_12145"
     CDS             complement(4843..5316)
                     /locus_tag="VF788_12145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEX8934915.1"
                     /translation="MSEMRVVGVRVELPANQPILLLRETEGERYLPIWIGSGEATAIA
                     LEQQGVQPARPMTHDLLRDVIRALGGQLKQVRITELQEGTFFAELVFDGNVRVSARPS
                     DSVALALRVGVPIHADESVLSEAGLIIPDDQENEVERFREFLDSVSPEDFRGADT"
     gene            complement(5557..6357)
                     /locus_tag="VF788_12150"
     CDS             complement(5557..6357)
                     /locus_tag="VF788_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8934916.1"
                     /translation="MTAPRRSGERTGASIGSVLAQLRAEFPDVTISKIRFLESEGLVQ
                     PERTAAGYRQFSAADVERLRYVLAAQRDHYLPLRVIKEQLDARDRGEPEQPRQGCSER
                     SPGRLTAQRWAQATRPRVSACPDTVTQAAKGDGSEDVHAADTARMTQEELLAAAGITR
                     AVLTQLEQFGLVRSGPAGFYDTDAVLVARTAQAMTDFGLEPRHLRSFRASADREVGLL
                     AQIVTPVSRQRDPDSRARADEVVRELAVLSLRLHALLVKIGLRGVIGS"
     gene            complement(6354..6824)
                     /locus_tag="VF788_12155"
     CDS             complement(6354..6824)
                     /locus_tag="VF788_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017988089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX8934917.1"
                     /translation="MSTNDGPGVPPERGPEQTSTFRADFLSEVESAESPAPPIAGIDA
                     LPAGSALLVVRRGPNAGSRFLLDRPTTSAGRHPDSDIFLDDVTVSRRHAEFRREGGEF
                     VVVDVGSLNGTYVNREPVDTAMLANGDEVQIGKFRLVFLAGPRAGNRGADQGSR"
     gene            complement(6926..7309)
                     /gene="gcvH"
                     /locus_tag="VF788_12160"
     CDS             complement(6926..7309)
                     /gene="gcvH"
                     /locus_tag="VF788_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEX8934918.1"
                     /translation="MVPEELRYTPGHEWVRLGADGAVRVGITDYAQAQLGEVVYVQLP
                     LLGDSVTGGEPVGEVESTKSVSDLFAPLAGEVVARNDTLEEHPELINSDPYGEGWMIE
                     IKLSEMSAVDSLMIAKEYRALIEEG"
     gene            complement(7322..7936)
                     /locus_tag="VF788_12165"
     CDS             complement(7322..7936)
                     /locus_tag="VF788_12165"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEX8934919.1"
                     /translation="MSDGWPRNPVRDPADRLLTVPNVLSLLRLAGIPLFLWLLLGPHR
                     DLLAVLVLALSGLTDWLDGKLARLLNQSSKLGMLLDPAVDRLSTVAILFAFGVRDILP
                     WWVVVALLGRDLVLISTLPVLRHYGHGPPPVHYLGKAATLCLLYAFPLLLLAHDVHGW
                     VGAVAQAFAVAFIGWGGALYVWSGVLYLVQFLLTVRAVAGANRA"
     gene            complement(8011..9204)
                     /gene="glf"
                     /locus_tag="VF788_12170"
     CDS             complement(8011..9204)
                     /gene="glf"
                     /locus_tag="VF788_12170"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009273 - peptidoglycan-based cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEX8934920.1"
                     /translation="MSFARYDLIVVGSGFFGLTVADRAATQLNKRVLVVERRHHLGGN
                     AYSEKERETGIEVHRYGAHLFHTSNKRVWDYVNQFTRFTGYQHRVFTIHRGQVYPFPM
                     GLGMISQFFGRYFTPREARALIAEQAAEIDGKEATNLEEKAISLIGRPLYEAFVRDYT
                     AKQWQTAPTELPAATITRLPVRYNFDNRYFNDTFEGLPVGGYTAWLTAMATHPNIDVL
                     LNTDYFELRDDLQAGTPVVYTGPLDRYFDYSEGWLGWRTLDFEQEVLHDCGDFQGTPV
                     MNYPDADVSFTRILEFRHFHPERDHYPTDRTVIVREFSRSAGKEDEPYYPINTPEDRV
                     KLGRYRDLAKAETAQRNILFGGRLGTYKYLDMHMAIGSALTMFDNKIVPYFAHGRALE
                     GALDE"
     gene            complement(9239..10018)
                     /locus_tag="VF788_12175"
     CDS             complement(9239..10018)
                     /locus_tag="VF788_12175"
                     /inference="COORDINATES: protein motif:HMM:TIGR03083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylpyruvate isomerase family
                     mycothiol-dependent enzyme"
                     /protein_id="HEX8934921.1"
                     /translation="MAPLRNERYLEALTAQSALLSEAVAGADLALQVPTCPDWTLRQL
                     VEHVGRAHRWVTEIIARRLTSAPDFDILSVLAPDNAAGLGTWLVDGAGELAEAIRSVG
                     PQTLIWSWAEEQGAGFWARRMTHETALHRADAELALGRGFALDADLAADAISEWLSLL
                     GSPQAVKYRPELAELRGEGEILHLHSTDPGLGEAGEWIVRRTPSGPVWEPGHTKGAVA
                     VRGAVVDLLLVMMRRVAPGEAPITVLGDAGVLDHWLAHTRF"
     gene            10159..>10768
                     /locus_tag="VF788_12180"
     CDS             10159..>10768
                     /locus_tag="VF788_12180"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEX8934922.1"
                     /translation="MSGGRGAFLAAAVRSPREVGTLLPSGPELARRLAAVVPAASHSE
                     RPAVVVEVGAGAGAVTAAIAQQADQGAVVIAVEKDPELAERLRSRGLGVRVVTADAAT
                     LPAILAEHGVDHADVIVSVLPWTLFGPEQQRKFLAIFAAALQADGVFTAAAYSLGYWT
                     PAARRFRRELGRVFGEVLPTRTMWRHLPPAMTYVCRHPAVASD"
BASE COUNT         1888 a         3592 c         3474 g         1814 t
ORIGIN      
        1 gggctcgcac cgtgatccgg gctggggaga aattgccgtt gatgctggcc gcggcacaac
       61 tcgggatcac gatcagctct ctggtgctgg gttcgctggg agagcccgcc gtcgcccacc
      121 tgctggaatg gctgaccggc cccctcgggg tacccgacgc ggtcctgcac acgatcgcgt
      181 tcgtcgtcgc gctgggcatc gtcacggtgg cgcacatcct gctcggcgaa atggtgccca
      241 agaacatcgc catcgcgggc ccagagcgca ccgcgctctg gatggtgccg ccgctggtcg
      301 ccttcatgcg cgtgacccga cccgtcatcg cgctgttcag tcaggccgcg cggctggtgt
      361 tgcatctgtt cggcgtagcg ccccgcgacg agctggacag cgcatacagt cccgacgagt
      421 tggccaacct tatcgctgac tccagccgcg agggactgct ggacagccag gaacaccgca
      481 ggctgacgca aaccttatca acgagggagc gaaccgtcgc ggatgtattg gtgccgatct
      541 ccagactgac cacggtgccc gccgaaccca ccctgggcga catcgaacga gctgtggcgc
      601 aaaccggttt ctcccgcttt ccgctgcgaa ccagcagcca gctgatgggc tacctgcacg
      661 tgaaggacgt gctaccgcta ctcggcaagc cgccggacac accggtgccc tcaagcagtg
      721 cgcgcccgct acccgaggtg cccgttagtg ccagattcga ggaagcactg gccttgctgc
      781 ggcgctcacg aagccacctc gcccgggtcg tggacaccga cgggagcacc ctcggggtca
      841 tagcgctgga ggacctggtg gaggaatacg tcggcactgt acgtgatggg actcacgtgt
      901 cgtgagcaca cagcaccaac cgctcgaacc cgatcgtcac tacgagcagg agcagaccag
      961 attgcggtcc ccgtgggcct ggtcgactcg ccgtaccggc ggccacacct tgacggccgt
     1021 ccggcccatc gggtacgcgg cgagttcccg gctgtagggg tggtcccact tgtcggtcag
     1081 gcagctcgca gtgtgtggcg cgcaatgaag cgggttgtca tcggcgggcc actccccctc
     1141 ggcgacccgg tcgatctcgt cccggatcgc gatcatggcg tcgcagaaac gatccagctc
     1201 agcccggctc tcgctttcgg tgggctcgac catcaaggtg tcggcgacgg ggaacgacat
     1261 ggtcggggca tgcaacccgt agtcagccaa ccgcttggcg acgtcctgca cggtgacgcc
     1321 ggtcgccttg gtgatggacc gcagatccag gatgcactcg tgggcgacta acccgttacg
     1381 gcccgcgtac agcaccggga agtacccccc gacccgacga gcgacgtagt tggcgctggc
     1441 caccgcagtc agggtggcgc ggcgcaagcc gaccgcaccc atcatccgga tgtaggccca
     1501 actgatcggc agaatcgagg cgctgcccca cggcgcggcg gacaccgggc ctaccacggc
     1561 atcgggctgg gtctccgggt gcccgggcag gaacggcgca aggtgggccc gcacgccgat
     1621 cggcccgacc cctggaccac cgccaccgtg cgggatgcag aaggtcttgt gcaggttaag
     1681 gtgactcacg tcggcgccga aacgacccgg gcgggccagc ccgagtaggg cgttgagatt
     1741 ggctccatcg acatagacct gcccaccggc ttcgtgcacc agatcgcaca cctgcgccac
     1801 accgggctcg tataccccgt gcgtagacgg ataggtgatc atgacggcgg ccagctcggc
     1861 accgtgcttg gcggtcttca cccggagatc atcgaggtcg acgtcaccct tgtcgtcaca
     1921 tccaacaacc acgacccgca tcccggccat caccgccgag gccgcgttgg tgccgtgcgc
     1981 gctggacggg ataaggcaga tgtcgcggcc cgcctcatca cggctgcggt gataagcgcg
     2041 gatcgctagc aggcccgcga actcgccctg gctgcccgcg ttgggctgca tgctgaccgc
     2101 gtcatacccg gtcagcgcgg ccaaccagcg ctccaggtca ctgaccacct caagcagccc
     2161 ttgtgcatcc tcgcgaggcg caaagggatg cagctgcgcg aactgcggcc agctgatcgg
     2221 ctccatctct gcggtggcat tgagcttcat cgtgcaggag cccagcggga tcatgctgcg
     2281 gtccagcgcc atgtccttgt cggccagtgt gcgcaagtag cgcagtagtg ccgtctcgct
     2341 gcggtatgca gagaagaccg gatgggtgag gaacgatgag cttcgccgta gtgcaaccgg
     2401 gatggtgtct gggatttccc gatcgagaac gtccgggtcg gctgccggta cgccgaaggc
     2461 ctcccacacc gtccggagat gttcccgggt cgtggtctcc gcgcaactga tcccgacatg
     2521 atcgacgtcg gccagccgca gatcgatgcc agccacccgg gcggcgtgca cgacctcagc
     2581 ggctcgggca ggcaccctgg ccagcaccgt gtcgaagaac gcttcgggcg ccacctcgac
     2641 gccgccgtcg cgcaaccctg cggccaacac cgcggccatc cggtgcgccc ggtacgcgat
     2701 atcgcgcaac ccctcagatc cgtgatagac cgcgtacatc gaggccatca cggccagcag
     2761 tacctgggcg gtacagatgt tgctggtggc tttctcccgg cggatgtgct gctcgcgggt
     2821 ctgcaacgcc agacgcagcg ctggcgaccc gtcggcatca cgggacacgc cgaccagccg
     2881 tccggggagc tgacgcgcca ggctggcgcg caccgcgagg taggcggcat ggggtccgcc
     2941 gaagcccagc ggcacaccga agcgctgggt ggatccgaat gccacatcag caccgagctc
     3001 gcccggcggt accagcagag tcaatgccag cggatcggca gcgaccgcga ccgcagtgcc
     3061 gcgctggtgc gcctgcgtga tgagcctggc atgatcgcat atcgcaccgg acacgcccgg
     3121 gtaggacagc aacacgccga agaagtcacc gtctgggagg cgccgggaca ggtctgtgac
     3181 gtccagctcg atacctagag gttccgcgcg ggtcgctagc actgccaacg tttgcggcaa
     3241 cgtgtcggcg tcgacaacga aacgcgcgga ggaccctcgg tccgcccggt gcagcagggt
     3301 catcgcctcg gcggccgcgg tggcttcgtc aagcagcgag gcattggcga ccgccaaacc
     3361 ggtgaggtcg cagatcatcg tctggaagtt gagcaaagcc tcgagccggc cctgggagat
     3421 ctccggctgg tagggcgtat aagcggtata ccaggcagga ttttccaaca ccgaacggcg
     3481 gatcaccggc ggagtcaccg taccgtggta acccatgccg atcatcggca ctcgcggctg
     3541 gcatcgcatc gcacgctcgc gcagttcggc gagggcctgt acctcggtgg ccggagccgg
     3601 taaatccggg atggcctctg catcggcgag ggcggctggc aacgccagct gcgccagctc
     3661 ttccaacgac tgcacgccga taatctcgag catccgggcc agatcggcag ggcgcggccc
     3721 aatgtgccgg tcagcgaatg gagtgccgtg ttccagctcg gatagtgagc gccggttggg
     3781 aacgttcatc agcacgacct ccggacttga gggagggctt gctcctttcg gcgcccgggc
     3841 ggctatggcc gagaactctc ccgtgcggga ttggcgacta cgcagtcagc ctaccctgac
     3901 atgtagccat cccaggatgc cggcatgccg ctgtgaccgg ctgcacagcg cttactcaac
     3961 accgcggcat tcttctcaaa caccaggcat ggttcagctg atccggcgag cccgccggcg
     4021 cttggtcagc tcgtcctccg gagctggctc gacgtggccg ccatcggcac gctccggggg
     4081 aaatcggctg atagatccag cgatctcctt catcgcgcca ctgactgcga tgccgaacac
     4141 gccttggcca ccctgcagca ggtcgactac ttcctcagga gaggtgcatt cgtagaccgt
     4201 ggtgccatca ctgaacaggg tgatgcgagc caggtcatgc actccgcgac ggcgcaggtg
     4261 ctcgacagcg actcggatgt tctgcaggga gaccccggtg tccagcagcc gtttgaccac
     4321 cttgagcacc aggatgtctt tgaacgagta gagccgctgg ctacccgatc ctgaggctcc
     4381 ccgaattgat ggcgctacca ggttggttcg tgcccagtag tccagctggc ggtaggtgat
     4441 ccccgcgatc tggcatgccg cggggccacg gtagccaagc agatggtcag tgattccgtg
     4501 cggatccgcc aggacggatt ctgggaacag ggtgccttgc tcagccgact cccccgtccc
     4561 gaaatcggaa tggttgaggt catatgccgg gatgtccgct gcgccgcgcg gtccgtcgac
     4621 cacccatgcc tcccacgccg tgcgcgccga tgctccgtga aacgttgccc ggcagttctc
     4681 cggccgttcc ggggcgaatc acaccggcgc gactcactgt gaggatcgac ggtaggcgcc
     4741 accgggtggt cggtcaatac gacgcgcggc agagctctca ccctcaactt gagatcgagg
     4801 ttgcgcagcg agccttcagg tacccgcacg gcgcagcgtc aatcaggtgt ccgctccccg
     4861 gaagtcctct ggggagacgg agtcgaggaa ctcacggaac cgctctacct cattctcctg
     4921 gtcatccggg atgatcaggc cagcctcaga gagcaccgac tcgtcggcat gaatcggcac
     4981 gccgacccgt aatgccagcg caaccgagtc gctcggccgg gcggagaccc gcacattacc
     5041 gtcgaatacc agttcagcga agaaggtgcc ttcctgcagc tcggtgatcc ggacctgttt
     5101 cagctgtcca cctagcgcac ggatcacgtc tcggagcagg tcgtgggtca tcggccgagc
     5161 cggttgcacg ccctgctgct ccagtgcgat ggcagtcgcc tctcccgaac cgatccagat
     5221 cggtaggtag cgctcaccct cagtttccct taacagcagg atcggctggt tcgctggcaa
     5281 ctccacccgg acaccgacga cacgcatctc gctcatcgcg ttgcgcctcc ctcccggtgc
     5341 acccttagac cgggcgcctc gaggaccgtc gtgctcagcg gtggacaggc accggccgcc
     5401 ggttgtttgc tagccctgtc gcgtctccac catcgctacc cttgagacgc tacacgtggc
     5461 accgtcccga tgccgagtcc tgcggcggct caaattcccg cgtttgccta cttctgagat
     5521 tcttcgtctg ggcctgccgg tgggctgtca ccggactcag ctcccgatga caccacgcaa
     5581 cccgattttg accaggaggg catgcagccg caaggaaagc acagccagct cccggaccac
     5641 ctcgtcggcg cgggcgcgtg agtcaggatc tcgttgccgg ctcactggag tgacgatttg
     5701 agccagcagg cctacctccc ggtccgccga cgcccgaaag gaacgcaggt gcctgggctc
     5761 caatccaaaa tcggtcatcg cctgcgccgt ccttgccacc agcaccgcat cggtgtcgta
     5821 gaagcctgct ggccccgacc gaaccaggcc gaactgctcg agctgagtca gtacggccct
     5881 ggtgatgcca gccgcggcga gcagctcctc ctgggtcatc cgcgccgtat cagctgcgtg
     5941 gacgtcttcc gatccgtctc ctttcgccgc ctgtgtcacc gtgtcggggc aagcactaac
     6001 gcgcggccgc gtcgcctgcg cccagcgttg ggcggtgagc cttccgggag atcgttcgga
     6061 acatccttgc cgtggctgct cgggttcacc ccgatctcgt gcgtccagct gctctttgat
     6121 cactctcagc ggcagatagt gatcgcgttg ggcggcgagc acatagcgca gccgttccac
     6181 atccgctgca gagaattgcc ggtacccggc agcggtgcgt tctggctgga cgagcccttc
     6241 ggattccaga aacctgatct tagagatggt gacatccggg aactccgccc gcagctgggc
     6301 gagcaccgag ccgatgctcg ccccggtacg ctcgcccgag cggcgcgggg ctgtcaccga
     6361 gacccctggt cagctcctcg gttcccggcg cgcggcccag ccaggaacac cagccggaac
     6421 ttgccgatct ggacctcgtc gccgttggcc aacatcgcgg tgtccactgg ttcacgattg
     6481 acataggtgc cgttcaggct gcccacgtcc accaccacga actcaccgcc ctcacgtcgg
     6541 aactcggcgt gccggcggga cactgtgacg tcgtcgagga agatgtcact gtccggatgc
     6601 cggcccgcgc tcgtggtagg tcgatcgagg aggaaccggg aaccggcgtt ggggccacgc
     6661 cggaccacga gcaacgctga gcccgccggt aatgcgtcga taccggcgat ggggggggcc
     6721 ggtgactcag cgctctcgac ttcggacagg aaatcggccc gaaacgtcga ggtctgctcc
     6781 gggccccgct ctggcggtac gccgggcccg tcgttcgtgc tcacgctggg ctctccttcg
     6841 cggggtggtc gccgttgatc gaccacaacc taccgtgcca caacacgcga tgcggaggcg
     6901 gaggtagacc actgctgcgc ccgtctcagc cttcctcgat gagcgcccgg tactccttgg
     6961 cgatcatcaa ggaatccacc gcggacatct cggacagctt aatctcgatc atccaacctt
     7021 cgccgtaagg atcggagttg atcaattcgg ggtgctcctc cagggtatcg ttgcgggcga
     7081 ccacttcgcc tgctagcggc gcgaacaggt ccgacacgct ctttgtggat tccacctcac
     7141 cgaccggttc accccctgtc actgagtcac cgaggagcgg caactggacg tagaccacct
     7201 ctccgagctg cgcctgcgca taatcggtga ttccgacgcg cacggcgccg tccgctccaa
     7261 gacgcaccca ctcatgcccc ggggtatacc gcagctcctc cggaaccacc gcaacctccc
     7321 atcatgcacg gttcgcgcct gccacagcgc ggaccgtgag caggaactga acgaggtaga
     7381 gcactcctga ccagacgtac agtgcaccgc cccacccaat gaacgccaca gcaaatgcct
     7441 gggccactgc acccacccaa ccgtgcacgt cgtgggcgag tagcaacaac gggaatgcat
     7501 agagtaggca gagagtagct gccttgccca gatagtgcac cggcggcgga ccatggccgt
     7561 aatggcgcag cacgggcagc gtcgatatca gcaccagatc gcggcccagc agcgcgacga
     7621 ccacccacca cggcaggatg tcccgcacac cgaaggcgaa caagatggcc accgtggaca
     7681 gccgatctac cgccggatcg agcaacatac ccagcttgct ggactggttc agcaagcggg
     7741 cgagcttgcc gtccagccag tcggtgaggc ctgatagtgc caataccagc accgcgagca
     7801 gatcgcggtg ggggccgagc aggagccata agaacagcgg gataccggcc agcctgagga
     7861 ggctgagcac gttgggcacc gtcagcagcc ggtcggctgg atcccgcacg ggattcctcg
     7921 gccagccgtc ggacaccctg catcacctca tcaacaccgt acggtgtgtg ctgggttgta
     7981 ttagtgtgat ctagtcaccg agggcccggt ctactcgtca agggcgccct cgagcgctcg
     8041 gccgtgcgcg aagtaaggaa cgatcttgtt gtcgaacatc gtcagcgcgg agccgatggc
     8101 catatgcata tcgaggtatt tgtaggtgcc caggcgtcca ccgaacagga tatttcgctg
     8161 tgccgtctcg gctttcgcta ggtcgcggta gcgtcccagc ttaacccggt cctcgggagt
     8221 attgatgggg tagtacggtt cgtcttcctt tccggcggac cgggagaatt ctcggacgat
     8281 gacggtccta tcggtcgggt agtggtcccg ctccgggtgg aaatggcgga actcgaggat
     8341 acgggtgaac gaaacatcgg catcggggta gttcatgacc ggcgtaccct gaaaatcacc
     8401 gcaatcatgc aggacttcct gctcgaagtc cagggtgcgc cagccaagcc agccctcgga
     8461 gtagtcaaag tatctgtcca acggtccggt gtacacaacc ggggtgccag cctggagatc
     8521 gtcgcgcagc tcgaagtagt cagtgttcag cagcacgtcg atgttcgggt gggtagccat
     8581 cgctgtgagc catgcggtgt agccgcccac cgggagaccc tcgaaggtat cgttgaagta
     8641 gcggttgtcg aaattgtagc gcactggcag gcgggtgata gtcgcagccg gcagttctgt
     8701 gggtgcggtc tgccactgtt tggccgtgta atcacggaca aatgcttcgt agagcggccg
     8761 gccgatgagg gagattgctt tctcttcgag gttggtggcc tctttgccgt cgatctcagc
     8821 agcttgttcg gcgatgagcg cgcgcgcctc acggggtgtg aagtagcgac cgaagaactg
     8881 cgagatcatg cccaggccca tcgggaacgg gtaaacctgg ccgcggtgaa tcgtgaatac
     8941 acgatgctgg tagccggtga agcgggtgaa ctggttcacg tagtcccaca cgcgcttgtt
     9001 ggatgtatgg aacaggtgcg caccgtagcg gtgcacctca atcccggttt ctcgttcttt
     9061 ctccgagtaa gcgttgccgc cgaggtgatg gcgccgttcc accaccagaa cccgtttgtt
     9121 caactgggta gcggcccgat cggccaccgt gagaccgaag aagccggaac cgacgacgat
     9181 gaggtcatat cgcgcgaagc tcacgccgcc ggagggtagc cgtggcgggt gacaggcctc
     9241 agaaccgggt atgcgcgagc cagtggtcga gaacgcccgc atcgccgagc accgtaatcg
     9301 gggcctcgcc cggggcgacg cgacgcatca tgaccagcag caagtccacc accgcgcccc
     9361 gaaccgccac cgcgcccttg gtatggccag gctcccagac ggggcccgat ggggtccggc
     9421 gcacgatcca ctccccggcc tcacccagac cgggatcggt ggagtgcaga tgcaggatct
     9481 cgccctcacc gcgcagctcg gcgagctcgg gccgatactt caccgcctgc ggcgaaccga
     9541 gcaggctcag ccactcggaa atcgcatcgg cggcgagatc ggcgtccaag gcgaaccccc
     9601 gacctagcgc cagctcggcg tcggcgcggt gcagggcagt ctcgtgggtc atccggcggg
     9661 cccagaaacc ggcgccctgc tcctcggccc agctccagat cagcgtctgc ggacccaccg
     9721 accggatcgc ctcagccagc tcaccggcac catcgaccag ccaggtgccc agcccggcgg
     9781 cattgtcggg ggcgagcacg ctgagtatgt cgaagtccgg cgcagaggtg aggcgtcgag
     9841 cgattatctc ggttacccac cgatgggccc ggccaacgtg ctcgacgagt tgccgcagcg
     9901 tccagtcggg gcaggtcggc acctgcagcg ccaaatccgc gccggccacc gcctcgctca
     9961 gtagcgcgga ctgggcggtc aatgcctcga ggtaccgttc gttgcgcagc ggtgccatca
    10021 gatgccctcc gtggtcgatt cgacttgcaa cttaaggcac ctgcaaggtt gatagtgcgg
    10081 cgacgcaccg ggtggtgtgc actgtgaccc atggcctcgc attccgcctc acgtccgcaa
    10141 gttcctgtgc agcgcgcatt gagcgggggg cgaggtgcct tcctcgcggc ggcagtgcgg
    10201 tctcctcgcg aggtcgggac gctgctgccc tccgggcccg agctcgcccg gcggctggcc
    10261 gccgtggtac cggcagccag tcacagtgag cgacctgcgg tcgtggtgga ggtcggtgcc
    10321 ggtgccgggg cggtcaccgc ggcgatcgcc caacaggcag accagggcgc ggtggtgatt
    10381 gcggtcgaga aggaccccga gcttgccgag cggttgcggt cccgggggtt gggcgtgcgg
    10441 gtggtcaccg cggacgccgc gacacttccg gccatccttg ccgagcatgg cgtggaccac
    10501 gccgacgtga tcgtctctgt gctgccctgg actctgttcg gccccgaaca gcagcgcaag
    10561 tttctggcaa tcttcgcggc ggcgttgcag gccgacggcg tgttcaccgc tgccgcatac
    10621 agcctgggct actggacgcc cgcggctcgc cggtttcgac gcgagctggg ccgggttttc
    10681 ggcgaggtgc tgccaacccg caccatgtgg cgacacctcc caccggcgat gacctatgtg
    10741 tgccgacacc cagccgtggc cagtgacg
//
LOCUS       DASVXZ010000584         6222 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_691155, whole genome shotgun sequence.
ACCESSION   DASVXZ010000584 DASVXZ010000000
VERSION     DASVXZ010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6222
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691155"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1156
                     /locus_tag="VF788_12185"
     CDS             <1..1156
                     /locus_tag="VF788_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003099005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEX8934923.1"
                     /translation="SCWTLSAGYTVAAVVERGDPRAIVRLGSVEMLVMFATIGLAVAL
                     NQTAPPGATAAQPSRTEVFLGYDLDGPPTPARLLLDWRPDLVFGVAALLLAGGYAAGI
                     RRLRLRGESWPVGRTVAWLGGCTIILIATSSGIGRYSMAMFSVHMGMHMLLSMVAPIL
                     LVLGGPVTLALRALPVTQLGNPPGPRKWLLTFLHSWVARLATHPLMVLGMYVGSFYVM
                     YFTGLYDAAVPSHWAHLVMNAYFLVIGYAYYWLIVGIDAAPRELPYLGKLGLLLAAMP
                     FHAFFGISLMSSVTVIGGAFYRSLALPFVSDLLADQRVGGAMAWALGEIPMVIVLVVL
                     LVQWARSDPRETRRFDHRPEAGDDSELVTYNALLARSGGHRAARDKGVSY"
     gene            complement(1169..1810)
                     /locus_tag="VF788_12190"
     CDS             complement(1169..1810)
                     /locus_tag="VF788_12190"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEX8934924.1"
                     /translation="MERAFGLEIPRTLEEACDPRRLALVVYDMQIGVLGQIKDADAIA
                     RQVMEVLDAARSAGVRVVFLRHLSMPRELMGVSQLRMAMAWQRVDSVDAVSPWFLRDS
                     PGFELLPELAPRPTEALFDKITMSAFEGTPLDIVFRDCGVNAFAIVGVATEVGIDPTV
                     RHGSDLGYIPIVVTDACGAGDEKAARRSIEGLEYTGDALLTDTATFCRTLRGQ"
     gene            2066..2581
                     /gene="ssb"
                     /locus_tag="VF788_12195"
     CDS             2066..2581
                     /gene="ssb"
                     /locus_tag="VF788_12195"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEX8934925.1"
                     /translation="MRETPVTVVGTLVSDMRPRRVGPDGALVLNFRVACNERRFDKAS
                     ESWVDGESLYLSVSCWRRLAENAASLVKGDPLIVRGKLRTREWATEQGERRSVVELEA
                     TAIGPDLARCAATVRKQRWEERPRITTDDSPPVPLAEDLSDLIDDMNSPDGLSVADLA
                     DAARPLVPASA"
     gene            2655..4331
                     /gene="ettA"
                     /locus_tag="VF788_12200"
     CDS             2655..4331
                     /gene="ettA"
                     /locus_tag="VF788_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019512148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HEX8934926.1"
                     /translation="MAEFIYTMKQVRKAHGDKVILDGVTLAFLPGAKIGVVGPNGAGK
                     SSVLKIMAGIDQPNNGEAYLAPGATVGILEQEPRLNEDKSVLGNVEEGLGEVKGKLDR
                     FNEIAEMMATDYSDELMEEMGRLQEELDYADAWDLDSQLEQAMDALRCPPPDEPVRHL
                     SGGERRRVALCRLLLSKPDLLLLDEPTNHLDAESVLWLEQFLAGYPGAVLAVTHDRYF
                     LDNVAQWILELDRGRAYPYEGNYSTYLEKKADRLAVQGRKDQKLQKRLRDELAWVRSG
                     AKARQAKSRARLQRYEEMAVEAERSRKLDFEEIQIPAGPRLGNVVVEVSHLDKGYDHR
                     MLIKDLSFTLPRNGIVGVIGPNGVGKTTLFKTIVGLEKPDSGTVRIGETVKLSYVDQE
                     RAGIDPNKTVFEVVSDGLDYIQVGNTEMPARAYVSAFGFKGPDQQKPAGVLSGGERNR
                     LNLALTLKQGGNLILLDEPTNDLDVETLGSLENALEQFPGCAVVISHDRWFLDRVVTH
                     ILSWEGTEENPASWFWFEGNFEAYEQHKVERLGADAARPHRVTHRRLTRD"
     gene            4380..>6222
                     /locus_tag="VF788_12205"
     CDS             4380..>6222
                     /locus_tag="VF788_12205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934927.1"
                     /translation="MSSTAREVRTPVTANGGEAASLVESAMLLRWRAPELALLLADRA
                     VTAAQDDKMAVLRADHLAVFALNHLGRHGEAAHRLFPAIQDADASQALRHELHVELAR
                     CAVAVGEPLTALDAVHVVLAAGDDVAPVLRGEALVTVAEATLALGRNDLVTSALAEAD
                     ELYREDPGLDRDTALLLRAAVRATDAARHRGRGAAAEAEAKSREGRELLAGLADPDHD
                     SGEVSARLMLELVLTLLDRGAGEAAMQEVRPLLRRPVRAAAASSVGRLRLALATQVHL
                     AEGRHEPALTLLADAVEGAQRYGVDAVLAECLEGLSHVHEARDEFADALYCMRAARAA
                     EARHRRDVATARITLLENCGSARHEQARLLGQVAELLTPPGTGCAGLDSDAGTLHAEP
                     AQAVAPEVAGSPVAEVEPTEVQIAAEVELTAEVEATAEMEPAVIEITVEVIEAEVCHP
                     IEPESTPAPLSTSLAESDGASTAPVEPPAAVLPVADAESSSGLDSWQSRARHRRDGEG
                     VLVSVSDLLPASAMSAGRSGRRRAGESAENGPGQKPGVEKHPLIEDGSEQSNTNSRSV
                     ADNPDTPTTVLGYPLLVRPPSDPSPNPDGDAIGGAPEQDTETLAMTRG"
BASE COUNT         1087 a         1889 c         2144 g         1102 t
ORIGIN      
        1 atcgtgctgg accttatcgg ctggttacac cgtggcggcg gtggtcgaac ggggtgatcc
       61 ccgggccatc gtgcggctcg gtagcgttga gatgctggtc atgtttgcga cgatcggctt
      121 ggcggtggcg cttaaccaga ccgctccgcc cggcgcaact gccgcgcagc ccagccgcac
      181 cgaggtgttc ttgggctacg acctggacgg gccgccgacg cctgctcggc tgcttctgga
      241 ctggcgaccg gatctggtct tcggcgttgc cgcgctcctg ctcgccggcg gctacgcggc
      301 cgggatccgg cgattgaggc tacgtggtga gagctggcca gttggtcgca cggtggcctg
      361 gctaggcggt tgcacgatca tcctgatcgc tacctcatct ggtatcggtc gctactccat
      421 ggcaatgttc agcgtgcaca tgggcatgca catgctgctg tcgatggtgg ccccgatcct
      481 gctcgtgctc ggcggcccgg tgacgttggc gctgcgcgcg ttgcctgtca cgcaactggg
      541 taacccgccg gggccgagga agtggttgct gacattcctc cactcctggg tagcgcggct
      601 cgccacgcac ccattaatgg tcctgggcat gtacgtcggg tcgttctatg tcatgtactt
      661 caccggcctt tacgacgctg ccgtgccgtc gcattgggcg catctggtga tgaatgcata
      721 tttcttggtg attggttatg cgtactactg gcttatcgtc ggcatcgatg ccgccccacg
      781 cgagttgcct tacctcggca aacttgggct gttgctggcg gccatgcctt tccatgcatt
      841 tttcgggatc tcgctgatga gttcggtgac ggtcatcggc ggtgccttct accgatcgct
      901 ggcgctgccg ttcgtatctg acctgctggc tgatcagcgc gtgggcggag ccatggcgtg
      961 ggccttgggc gaaatcccaa tggtgatcgt gctggtggtg ctcctcgtgc agtgggcccg
     1021 ctccgatcct cgcgagactc gccggttcga ccataggcct gaggcaggcg acgattccga
     1081 gctggtgacc tacaacgcgc ttctcgcccg atcgggtggc catcgcgccg ctcgggataa
     1141 gggcgtttcg tactgactgt cctcaggctt actgaccgcg cagggtgcgg cagaaggtgg
     1201 ccgtatcggt aagcagggcg tcgccagtgt attcgaggcc ctcgatcgag cgtcgggctg
     1261 ccttctcgtc accggcaccg caggcgtcgg tcacgacaat ggggatgtag ccgagatctg
     1321 agccgtggcg caccgtgggg tcgataccta cctcggtggc cacgcccacg atcgcgaagg
     1381 cattgacgcc gcagtctcgg aacacgatgt cgaggggggt cccctcgaag gcggacatgg
     1441 tgatcttgtc gaagagcgcc tcggtgggac gaggcgcaag ttccgggaga agctcgaaac
     1501 ccggagaatc gcgcaggaac cacgggctga ccgcatcgac cgagtcgact cgctgccacg
     1561 ccatggccat gcgcagctgg gagaccccca tcaattccct gggcattgac aggtgccgga
     1621 ggaaaaccac ccgtacaccg gctgagcgag cggcatcgag gacttccatg acctgtcggg
     1681 cgatcgcatc cgcgtctttg atctgaccta gcacgcctat ctgcatgtcg tagacgacca
     1741 aggcgagacg gcgtggatcg caggcctcct ccagcgtgcg agggatctcc aagccgaagg
     1801 ctcgctccat gccgacaacc ctagcgataa gacaccggtc ggcgctgctg cggactgccc
     1861 ggtcgggggc atagcactgc ctcccgacat tccggcggat cgacgggctt cgcccgcgca
     1921 gttgtgcaca ccgatccccg tcatccacag gtcgatcatg gatggctacc ggcgcgagcc
     1981 tttgcggccc agcctggacg gtaccggccg agggggtcgg ttcaccgcca cacggcgggg
     2041 acgggtggac aggagggcgt gtgagatgcg agagacaccg gtgactgtgg tgggaacgct
     2101 ggtcagtgat atgagaccgc gccgggttgg tccagatggg gcactggttc tcaacttcag
     2161 ggttgcgtgc aatgaacgtc ggttcgacaa ggcgtcggaa tcatgggtgg acggggaaag
     2221 tctttatctc tctgtgagct gctggcgccg gctagccgag aacgccgcta gcctggtcaa
     2281 gggtgaccca ttgatcgtca gaggcaagct gcgtacccgg gagtgggcca ccgagcaggg
     2341 tgagcgccga tcggtcgtcg agctggaggc caccgcgatc ggacccgact tggcccgctg
     2401 cgctgcgacc gtgcgcaagc agcgctggga ggaacgtccg cgtatcacca ccgatgacag
     2461 ccccccggtg ccgttggcag aggatctgtc ggatctgatt gatgacatga actcaccgga
     2521 tgggctgagc gtggccgacc tagccgatgc ggcccgtccg ctggtgccgg cgtccgcctg
     2581 agcgtcaagg ggccgggccg agcggcgatc ggccgcgctg cccggccccg gtgagcacct
     2641 ctacgattgc ggtcgtggcg gagttcattt acaccatgaa gcaggtgcgc aaagcgcatg
     2701 gcgacaaggt catcctcgac ggcgtcaccc ttgcgtttct tcctggtgcg aagatcgggg
     2761 tggtcgggcc caacggagcc ggcaagtcca gtgtgctcaa gatcatggcg gggatcgacc
     2821 agccgaacaa cggggaggca tacctggcgc caggtgcgac cgtaggcatc ctggagcaag
     2881 agcctcggtt gaacgaggac aagtcggtgc tgggcaatgt cgaggagggc ctgggcgagg
     2941 tcaagggcaa gctggaccgg ttcaacgaga tcgccgagat gatggccacc gactactccg
     3001 atgagctcat ggaggagatg ggcaggctcc aggaggaact cgactacgcc gacgcgtggg
     3061 atctggactc ccagctggag caggccatgg acgccttgcg gtgccccccg cccgacgaac
     3121 cggtccgcca tttgtcggga ggggagcggc gtcgagtcgc gctgtgccgg ctgctgctgt
     3181 ccaaacctga tctgctgctg ctcgatgagc ccaccaacca cctggacgcg gagagcgtgc
     3241 tgtggttgga gcagttcctg gcgggttatc cgggtgcggt cctggcagtc acccacgacc
     3301 ggtacttcct ggacaacgtc gcccagtgga tcctggagct cgatcgtggc cgggcctacc
     3361 cctacgaggg caactactcc acctacctgg agaagaaggc cgatcgtctc gcagtccagg
     3421 ggcgcaagga ccaaaagctg cagaagcgcc tgcgtgacga gctcgcctgg gtgcgatcgg
     3481 gtgcaaaagc ccggcaggcc aaatcccgag cccggctgca gcgttatgag gagatggcgg
     3541 tcgaagccga gcgcagtcgc aagctggact tcgaggagat ccagatccca gccgggccga
     3601 ggttgggcaa cgtcgtggtg gaggtgtcgc acctggacaa gggctacgac caccgcatgt
     3661 tgatcaagga tctgtccttc accctgcccc gcaacggcat cgtcggggtc atcggtccca
     3721 acggcgttgg aaagacaacc ctgttcaaga ccatcgtcgg tctggagaaa ccggactccg
     3781 gcacggtccg gattggtgag accgtcaagc tgtcctatgt cgatcaggag cgcgcgggaa
     3841 tcgatccgaa caagacggtc ttcgaggtgg tctccgacgg cttggactac atccaggtag
     3901 ggaacaccga gatgccagcg cgggcatatg tcagtgcgtt cggcttcaaa ggtccagacc
     3961 agcagaagcc ggctggggtg ctctcaggtg gcgaacgcaa ccggctcaac ctcgcgctga
     4021 cgctcaaaca gggcggcaat ttgatcttgc ttgacgagcc caccaacgat ctcgacgtcg
     4081 agacgctcgg atcgctggag aacgccctgg agcagttccc gggctgcgcg gtggtgattt
     4141 cccacgaccg ctggttcttg gaccgggtgg tgacccacat tctcagctgg gagggcacag
     4201 aggagaatcc cgcttcctgg ttctggttcg aggggaactt cgaggcctac gagcagcaca
     4261 aggtcgaacg gctcggagcg gatgctgcgc gaccacaccg cgtgacgcac cgcagattga
     4321 cccgggactg accgggcatg tggcggtcga tgatcgggaa ctccgatggg gggtgggagg
     4381 tgagcagcac ggcgcgcgag gtccggaccc ctgtgacggc aaacggaggc gaagccgcat
     4441 cgctggtgga atcagccatg ctgctgcgct ggcgagctcc ggagctggcg ctcctgctgg
     4501 ccgatcgggc ggtaaccgcc gcacaggacg acaagatggc tgtcctgcgg gcagatcacc
     4561 ttgcagtgtt tgcgcttaac catctcggac ggcatggtga ggcagctcat cgcctcttcc
     4621 cggcgataca agacgcggac gcctcgcagg cactgcggca tgagttgcat gtggaattgg
     4681 cgcgttgtgc tgtcgccgtc ggggagcctc tcaccgcgct cgacgcggtg catgtggtgc
     4741 tggccgccgg tgacgatgtc gctccggtgc tgagaggcga ggcacttgta accgtggccg
     4801 aggcgaccct ggcgctcggc cgaaacgacc tcgtcacatc cgcgctggct gaagcggatg
     4861 agctttatcg tgaggacccg ggtctagatc gtgacactgc gctgctgctg cgcgccgccg
     4921 tcagggcgac cgacgcagcg cgtcatcgtg gccggggcgc ggcggcagag gccgaggcca
     4981 agtctcggga gggccgcgag ctgctggcgg ggctggctga tccggatcac gacagcggtg
     5041 aggtaagtgc gcggttaatg cttgagctcg tgctcacgct cctagaccgt ggcgcgggcg
     5101 aggccgcgat gcaagaagtg cggccgctgc tgcggcgtcc ggtgcgagca gctgcggcta
     5161 gttcggtagg tcggttgcgg ctggccctgg ctacccaggt gcacctcgcg gaaggtcgcc
     5221 acgagcccgc actgaccctg ctcgccgacg cggtggaagg agcccagcgc tatggcgtgg
     5281 acgctgttct cgccgaatgc ctggagggtt tgtcccacgt acacgaagcc agggatgagt
     5341 tcgccgacgc cttatattgc atgcgcgcag cccgcgctgc agaagctcgt catcgccgcg
     5401 acgtagcaac cgcgcgaata accctgctgg aaaactgcgg gtccgcacgc catgagcaag
     5461 cccgcctgct cgggcaagtt gctgagctcc taacccctcc tgggacgggg tgcgccggac
     5521 tcgactcgga tgctggaacg ctgcacgctg aaccggcgca ggctgtcgca ccggaggtag
     5581 ccgggtcacc ggttgctgag gttgagccca cggaggtgca gatcgcagct gaggttgagc
     5641 tcacagctga ggtagaggcc acagccgaga tggagcccgc ggtgatagag atcaccgtag
     5701 aagtcattga ggcggaagtc tgtcatccga ttgaaccaga atcgacccct gcaccactga
     5761 gcacctcttt ggccgagtcc gatggagcat cgactgcacc ggtcgagcca ccggcagcgg
     5821 tgctaccggt cgctgacgct gagtcatcga gtgggcttga ttcctggcag tccagggccc
     5881 ggcatcgccg agatggggaa ggcgttctgg tgtcagtaag cgacctgctt cccgcatcgg
     5941 ccatgtcggc aggacgatcc ggtcggcgcc gcgccgggga atccgccgag aatggccctg
     6001 gccagaagcc cggagtcgag aaacacccgc tgatagagga tggctccgag cagagcaaca
     6061 cgaacagccg atcggttgcg gataatccgg acacgccaac cacagtgttg ggctacccac
     6121 tgctcgttcg ccccccatcc gacccgtcgc cgaacccgga tggtgatgcc atcgggggcg
     6181 ccccagagca ggacaccgag accttggcga tgacacgggg gg
//
LOCUS       DASVXZ010000585         1565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1107636, whole genome shotgun sequence.
ACCESSION   DASVXZ010000585 DASVXZ010000000
VERSION     DASVXZ010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107636"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            496..1317
                     /locus_tag="VF788_12210"
     CDS             496..1317
                     /locus_tag="VF788_12210"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8934928.1"
                     /translation="MADSSSMAQRMPPPGIDTTVPHSARFWDYLLGGKDNYPVDRAVG
                     EQVLRIDPDLHDAARADRGFLVRAVRYLVAEQGIRQLLDIGTGLPTVNNTHEVAQATA
                     PECRIVYVDNDPLVLVHARALLTSTPKGVTAYLDADVRDPDRILREAAHTLDFHQSIA
                     LMLLGIINYIVDDAEAHAVVKRLLDALPSGSYLAISHPTAEIHGEAVDASMRHWNENG
                     GTPIRHRTREEVLSFFDGLELLEPGVVSCSLWRPDPRDVGVRMEVHQYCGLARKP"
BASE COUNT          279 a          487 c          509 g          290 t
ORIGIN      
        1 atgacagcgc gtgcggacac gttcacttga agtctgtcta cctgatttcg acctggtcgt
       61 gctggcgtgt gagtcgaccc ggcgtggatc cagctgcacc agcaaatgct gacagcacac
      121 ctacggcacc aggtgcatct gcgggtgatc ggcaacaagg tcgctggcca cgctgaggtg
      181 gccttccggg aaggcgagct gggcgagatg ctgctcggcc gcgtcacgca ttccagctgg
      241 gtgaggacgc cgagcggagc gatccactgt tgcagtgtgc gggaaccgcc gattcgcgcg
      301 acccccgcgg cgctacgcca cgagttgccg gaactgggtg gcctatcact gcgacaccgt
      361 gcgtttccgc ctacgcgacg cacacgcctg gtcgaccggt ccgtgggtgc cgacttggcc
      421 gagtgcccga tgcgtcccgc cagaagttac agttgcttga ggtcggggat tggcgcgcag
      481 cgtaggagac gactcgtggc ggacagctcg tccatggccc aacggatgcc ccctccgggc
      541 atcgatacca cggttccgca ctcggcccga ttctgggact acctgctcgg gggtaaggac
      601 aactatccgg tcgatcgcgc ggtgggtgaa caggttctgc gcattgaccc cgatctgcac
      661 gatgccgctc gcgccgaccg agggttcctg gtgcgggccg tcaggtacct ggttgcagag
      721 caggggatcc gccagctact ggacatcggc accgggctac cgacggtgaa caacacccac
      781 gaggttgccc aggccaccgc gccggagtgt cgcatcgttt atgtggataa cgatccgctg
      841 gtgctcgtgc atgcccgtgc gctgctgacc agtacgccaa aaggtgtcac cgcctatctg
      901 gacgccgacg tgcgagaccc ggacagaatc ctgcgggaag ctgcccacac gttggacttc
      961 caccaatcta ttgcgctgat gctgctgggc atcatcaact acatcgtcga tgacgccgag
     1021 gcgcacgccg tcgtcaagcg ccttctggat gccctgcctt cgggcagtta cctagctatt
     1081 tcccatccca ccgcggagat ccacggcgaa gcggtggatg catccatgcg gcattggaac
     1141 gaaaacggcg gcaccccgat cagacaccgc acccgcgagg aggtcctcag tttcttcgac
     1201 gggctggagc tgctggaacc gggagtggtg tcgtgctcgc tgtggcgccc ggacccccgc
     1261 gatgtcggcg tccgcatgga ggtacaccaa tattgcgggc tggcccggaa accctgagca
     1321 agctgcgttg tgaaagctct ttgagcgcgc tctatagggc ctgatcgtct ctgcggggac
     1381 ttgcctgtac acatagccga tccgtcacca tgaggtagtg ctggacgcct cgttcttgtc
     1441 caggtatagc gcgtcggtca attgctgggg tagacgaggt cggacaggtc gcgttcggtg
     1501 aaccgcagga tcgtgaaggg accgccgatg accgcgtgcg cacctgagta gaacggcatc
     1561 accag
//
LOCUS       DASVXZ010000586         2992 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_570076, whole genome shotgun sequence.
ACCESSION   DASVXZ010000586 DASVXZ010000000
VERSION     DASVXZ010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570076"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VF788_12215"
     CDS             <1..296
                     /locus_tag="VF788_12215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HEX8934929.1"
                     /translation="DNAHVRLAAFENNDGLRILRRGYSFTDGIDPRTGTLDAGLFFIS
                     FQKDPAQFITLQRKLGKDDALNEYIRHVGSALFACPPGVSDASRYWGHALFEG"
     gene            304..606
                     /locus_tag="VF788_12220"
     CDS             304..606
                     /locus_tag="VF788_12220"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEX8934930.1"
                     /translation="MTCQQCRELAAELALNVLPARERVGVLAHLDACGGCRDTVAAMT
                     VTADRLVELLPAADPPVGFEHQVMTAWHHHRGARGGDGARSRSPARHGTGQRRVDP"
     gene            complement(663..926)
                     /locus_tag="VF788_12225"
     CDS             complement(663..926)
                     /locus_tag="VF788_12225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8934931.1"
                     /translation="MARTPNPYPSLDDAQYDAVVNGQYVKSTFSNATGGCLSFTVADG
                     LIGFQDDKLPPVERKARTLVFDQHEMAAFIAGAKNGDFDHLLD"
     gene            complement(931..1500)
                     /locus_tag="VF788_12230"
     CDS             complement(931..1500)
                     /locus_tag="VF788_12230"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5753 domain-containing protein"
                     /protein_id="HEX8934932.1"
                     /translation="MTEAVEMLVEIGDDASSARSYDNVFVQGLLQTRAYAEAVISNGR
                     AFIAPINIDRMADLRMRRQQRLGEDTFQGLVAVMTEGVIRTLVGGRDVMRDQLRHLIE
                     VTQEYPVTIHILPFSAGALPGTDNFVIFEFLHDFDGDVVYVESDTAQRIYEDRHPVRQ
                     CTYTFHAALAQALPARESQDLIRTVMEEL"
     gene            complement(1519..1800)
                     /locus_tag="VF788_12235"
     CDS             complement(1519..1800)
                     /locus_tag="VF788_12235"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934933.1"
                     /translation="MAQRRTIRSRRLGKQIRRLRDDAQLNQEKLVELMNADQPRQRCV
                     STAHLSRVETGIARISSEHLDRIITVLDVDTEQADKLHALRRRADEPGW"
     gene            1993..2412
                     /locus_tag="VF788_12240"
     CDS             1993..2412
                     /locus_tag="VF788_12240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934934.1"
                     /translation="MTELPPEIERLLLYVVADGFTVYCCGPQTAPTALAASYEWPDCI
                     DHLTIRSWDRAAAARIPKLGEVNVFEPDVVIWSYEGGAEPTLRALLNLVHPRHRQAPA
                     TPYPAPRALRLPRYEQRPMTIRLPPAAHARGRAARFI"
     gene            2450..>2992
                     /locus_tag="VF788_12245"
     CDS             2450..>2992
                     /locus_tag="VF788_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S oxidoreductase"
                     /protein_id="HEX8934935.1"
                     /translation="MAARLVIGLGLTLFTLIAAGQRVRWLYALIHSGQPDHSRTVDLG
                     ARLRTQLTEVLGQRRLLKWTIPGLAHFFTFWGFVVLLTVYIEAYGALFNPNFAIPLIG
                     HWAVLGFLQDVIALAVLLSIIAFAIMRIRQDPERRQRSSRFYGSHTGGAWLILVMIFN
                     VIWTMFLFRGTAVNVGTFPYL"
BASE COUNT          493 a          998 c          958 g          543 t
ORIGIN      
        1 cggacaacgc gcacgtccgg ctggctgcct tcgaaaacaa tgacggactg cgcatcctgc
       61 gccgggggta ctccttcacc gacggcatcg acccgcgaac cggcacgctg gacgccgggc
      121 tgttcttcat cagcttccag aaggacccgg cgcagttcat caccctccag cgcaaactcg
      181 gcaaagacga cgcgctcaac gagtacatcc gccatgtcgg atccgcactg ttcgcctgcc
      241 cgccaggagt ctcggacgcc tccaggtact ggggacatgc gctgttcgag ggctgaccag
      301 cccgtgacgt gccagcagtg ccgtgagctc gccgcagaac tggcactgaa cgtgcttccg
      361 gcccgcgagc gcgtcggggt cttggcgcac ctggatgcct gcggtggttg ccgggacacg
      421 gtggccgcaa tgaccgtcac cgccgaccgg ctggtggagc tgctgcctgc cgccgaccca
      481 cccgttggct tcgaacacca ggtgatgacc gcatggcacc atcatcgcgg cgcgcgcggc
      541 ggcgatggtg cccgtagccg cagtcctgcg cgccacggca ccggccaacg gcgggtggat
      601 ccttgaccgc tggcgacccg cagtctggat gcagaacgcg gttcaggctc tgcgtgagcg
      661 ggttagtcga gcaggtggtc gaagtctccg ttcttggcgc cggcgatgaa ggcggccatc
      721 tcatgctggt cgaagacgag ggtgcgagcc ttgcgttcga ccggcggcag cttgtcgtcc
      781 tggaagccga tcaagccatc ggccacggtg aacgacaggc aaccaccggt ggcgttgctg
      841 aaggtcgatt tcacgtactg cccgttgacc acggcgtcgt attgcgcgtc gtcgagcgag
      901 gggtacgggt tgggcgtgcg ggccactggg tcacaactcc tccatgactg tgcggatcag
      961 gtcctgggac tctcgggcgg gcagagcctg ggccagagcc gcatggaagg tgtacgtgca
     1021 ctgccgcacg gggtggcgat cctcgtagat gcgctgagcc gtgtcgcttt cgacgtacac
     1081 cacgtcgccg tcgaagtcat gcaggaactc gaaaatgacg aagttgtcgg taccgggcaa
     1141 cgctccagca ctgaacggca ggatgtggat cgtcaccggg tactcctgag tcacttcgat
     1201 caagtgtcgt agctgatcgc gcatgacatc tcggccacct accagggtac ggatcacgcc
     1261 ctcggtcatg acagctacca aaccctggaa ggtgtcctcg ccgagccgct gctggcgccg
     1321 catgcgcaga tcggccatcc ggtcgatatt tatcggcgcg atgaatgccc ggccgttgct
     1381 gatcaccgcc tcggcgtagg cgcgggtttg cagcagcccc tgcacgaaca cgttgtcgta
     1441 gctgcgcgca gagctggcgt cgtcgccgat ctccaccaac atctccacgg cctcggtcac
     1501 gatgtcggag tactcctgct accagcctgg ttcgtcggca cggcggcgta gggcgtggag
     1561 cttgtccgct tgctcggtat cgacgtcgag cacggtgatg atccggtcca gatgctcgga
     1621 gctgatccgc gcaatgccgg tctcgacccg cgacaggtgc gcggtggaga cgcagcgctg
     1681 gcgtggctga tcggcgttca tcagctcgac cagcttctcc tggttgagct gggcatcgtc
     1741 gcgtagccgc cggatctgct tgcccaaccg gcgggaccgg atggttctgc gttgcgccac
     1801 gacgcctccc agttcgcaag atcatgaaaa ttgcacgata cttacatacg ttgtacactc
     1861 gtcctacagg taagcgacaa ccttatcccc gtactggatc gctccggcga ttcaccaccg
     1921 acgacggtgg ccccggctcg acctccccga accgggccgg ggtcaccgtc caccaccgag
     1981 gttgaggatc acgtgacgga gctgccgccg gagatcgaac ggctgctgct ctacgtcgtc
     2041 gcagacgggt tcaccgtgta ctgctgcggt ccgcaaacag cgccgaccgc gctggcggcc
     2101 tcctacgagt ggcccgactg catcgatcac ctcaccatcc gcagctggga tcgggcggcc
     2161 gcggcgcgga ttcccaagct gggcgaggtc aatgtgttcg agcccgacgt cgtcatctgg
     2221 tcctatgaag gtggcgcgga gccgaccctg cgcgcgctgc tcaacctggt gcacccgcgg
     2281 caccggcagg caccggcaac cccgtaccca gcgccacgcg cactgcggct accccgctac
     2341 gaacagcgcc cgatgaccat ccggttgccc ccggcggccc acgctcgagg ccgcgccgcg
     2401 cgcttcatct agctactacc gagtaacaag ccgtagcctg gaagccgtga tggcagcacg
     2461 actggtgatc gggctggggc tgacgctttt cacgctcatt gcggccgggc agcgagtgcg
     2521 gtggctgtac gccctgatcc attccgggca gccagaccac agccgcaccg tggacctggg
     2581 cgcccggctg cggacccagc tgaccgaggt gctcgggcag cgacggctgc tgaaatggac
     2641 gatccccggc ctcgcgcatt tcttcacctt ttggggcttc gttgtcctgc tcaccgtcta
     2701 catcgaggcc tacggggcgc tgttcaatcc gaacttcgcc atcccgctga tcgggcactg
     2761 ggcagtactg ggcttcctgc aggacgtcat cgcactcgcg gtgctgttat cgatcattgc
     2821 gtttgcgatc atgcggatcc ggcaggatcc cgagcgcagg caacggtcgt cgcgcttcta
     2881 cggctcgcac accggcgggg cctggctcat cctggtcatg atcttcaacg tgatctggac
     2941 gatgttcctg ttccggggca ccgcggtgaa cgtcggcacc ttcccctacc tg
//
LOCUS       DASVXZ010000587         4788 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_871609, whole genome shotgun sequence.
ACCESSION   DASVXZ010000587 DASVXZ010000000
VERSION     DASVXZ010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4788
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871609"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..899
                     /gene="aroB"
                     /locus_tag="VF788_12250"
     CDS             <1..899
                     /gene="aroB"
                     /locus_tag="VF788_12250"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEX8934936.1"
                     /translation="FCWDAMGEIGLDRTGTVVGLGGGAVTDLAGFVAANWLRGVRVVH
                     VPTTLLAMVDAAVGGKAGINTDAGKNLVGAFHEPSAVLVDLAALHTLPRAELVAGMAE
                     VIKAGFIADPVILDLIEADPAAALDTSGPVLEELIGRAIRVKADVVAADLKESHLREV
                     LNYGHTLGHALERREGYRWRHGAAVSVGMVFAAELARLAGRLDDATAQRHRAVLSSIG
                     LPIRYDANALPELLEGMRNDKKTRSGVLRFVVLDELAKPGRLEDPDPELLAAAYAAVA
                     GPMEDGPKEDGPIENGAAEVSA"
     gene            896..1330
                     /gene="aroQ"
                     /locus_tag="VF788_12255"
     CDS             896..1330
                     /gene="aroQ"
                     /locus_tag="VF788_12255"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010311066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEX8934937.1"
                     /translation="MKVLVLNGPNLGRLGTREPDVYGASTLADLTAQCQRVGAELGLE
                     VDVRQTDHEGEMISWLHEAADAAAPVVLNAGAWTHYSIAVRDAATQLTAPLVEVHISN
                     VHTREPFRHHSYISAIASGVIVGLGIEGYLLALRWIAGRADT"
     gene            2048..3163
                     /locus_tag="VF788_12260"
     CDS             2048..3163
                     /locus_tag="VF788_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HEX8934938.1"
                     /translation="MRAATVEHMAHSQRREALREWLHARELDALLVSDLLNLRYLTGF
                     TGSNGALLVHADGDEASVFCTDGRYRTQSEQQVSDLPRLIERSSLLRLAKQATDTGIG
                     RLGFESHVVTVDGHAALAKVLGPDALVATSRPVEALRLIKDEAEVATLRSACAAADTA
                     LAGLLADDGLHPGRTEREVARDLEARMVAAGAAGPSFQTIVASGVNSAVPHHRPTDAQ
                     LRRGDLLKLDFGALVEGYHSDMTRTVVLGQPAAWQRELYDLVAAAQAAGRAGLRAGAN
                     VRDVDTAAREVIAQAGHGENFVHGLGHGVGLQIHEAPALSQFGVGTLEAGMAVTVEPG
                     VYLAGRGGVRIEDTLVVAEGEPELLTLTTKDLVVVPC"
     gene            3225..3788
                     /gene="efp"
                     /locus_tag="VF788_12265"
     CDS             3225..3788
                     /gene="efp"
                     /locus_tag="VF788_12265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEX8934939.1"
                     /translation="MATTNDLKNGLVLNLDGQLWSIVNFQHVKPGKGGAFVRTTLKNV
                     LSGKVVDKTFNAGTKVDTATVDRRDMTYLYADGPDFVFMDSDTYDQITIPGDVVGDAA
                     RYLLDNQTALVAIHEGTPLYIELPTSVELVISHTDPGLQGDRSTGGTKPATLETGAEI
                     QVPLFVSTGERVKVDTRDGRYLGRVSS"
     gene            3790..4197
                     /gene="nusB"
                     /locus_tag="VF788_12270"
     CDS             3790..4197
                     /gene="nusB"
                     /locus_tag="VF788_12270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEX8934940.1"
                     /translation="MGARSKARKRAVDILFESDLRGLDPLALLAERVGAPELPPVSDY
                     TVSLVHGVVEHGADIDKLLADQAHGWALTRMPAVDRAVLRLGVFELLFSDEVDDAVAI
                     DEAIELAKLLSTDDSPRFVNGVLGALAALPRSS"
     gene            complement(4217..4714)
                     /locus_tag="VF788_12275"
     CDS             complement(4217..4714)
                     /locus_tag="VF788_12275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX8934941.1"
                     /translation="MGDYAKALGSKLRGIRQQQGLSLHGVEQKSAGRWKAVVVGSYER
                     GDRAVTVQKLAELADFYGVPVPELLPEGRVSSGSEPATKIVINLERLQQLPVDKVGPL
                     ARYAATIQSQRGDYNGKVLSIRTEDLRSLAIIYDMSPGDLTEQLIGWGVLPPEARPVK
                     DKEEA"
BASE COUNT          828 a         1518 c         1586 g          856 t
ORIGIN      
        1 gattctgctg ggatgcgatg ggtgagatcg gtctggaccg taccggcacc gtggtagggc
       61 tcggcggcgg tgcggtcacc gatctcgcgg ggttcgtcgc cgccaactgg ctgcgcgggg
      121 tccgggtagt gcacgtgccc accacgctgc tggcgatggt ggacgctgcg gtgggcggta
      181 aagctgggat caataccgac gcgggcaaga atctggtcgg cgcgtttcac gaaccctccg
      241 ccgtgctggt ggaccttgcg gccctccaca cgttgccacg agccgagctc gtggccggaa
      301 tggctgaggt gatcaaggca ggattcatcg ctgatccggt gatcctggat ctgatcgaag
      361 ccgacccagc tgccgcactg gatacctccg ggccggtgtt ggaggaactg atcggccgag
      421 cgatccgggt caaggccgat gtggtggccg ctgacctgaa ggaatcccac ctgcgggaag
      481 tgctcaacta cgggcacacg ctgggtcatg ccctagagcg ccgggaggga taccggtggc
      541 ggcacggtgc tgcggtgagc gtcggtatgg tcttcgccgc cgagttggcc cggctcgccg
      601 ggcggctcga tgacgccacc gcccagcggc accgtgcggt gctcagctcg atcggcctgc
      661 ccatccgcta tgacgccaac gcgctacccg agctgctgga gggcatgcgc aacgataaga
      721 agacccggtc gggagtgttg cgcttcgtgg tgctcgatga gctggctaag cccgggcggt
      781 tggaggatcc ggaccccgag ttgctcgcag cggcctacgc cgcagtggcc ggcccgatgg
      841 aggacggacc aaaggaagac ggcccgatag agaacggtgc agcggaggtc tcagcgtgaa
      901 ggtgctggtg ctcaacgggc cgaacctggg tcggctcggg acgcgcgagc ccgacgtcta
      961 cggcgccagc accctcgccg acttgacggc gcagtgccag cgggtgggag ccgaactggg
     1021 gctggaggtg gacgtacggc aaaccgacca tgagggcgaa atgatcagct ggctgcacga
     1081 ggccgccgac gccgccgcgc ccgtggtgct caacgccggc gcgtggacgc attactcgat
     1141 tgcggttcgc gacgctgcca cgcagctgac ggcgccactg gtggaggtcc acatcagcaa
     1201 tgtgcatacc cgcgagccat tccggcacca cagctacatc tcggccatcg cctctggcgt
     1261 cattgtcggc ctggggattg agggctacct gcttgcactt cgctggatcg ccggtcgcgc
     1321 cgacacctga aaggtgtcac atacgtaatc cgatcgaggc ataccgatac tgccggggat
     1381 tctcgcggaa ctgcgtttat gactgttaag ttttgagcgc cgcacggtct gggtctggat
     1441 gtggatggtc cggcatcgac atgttcaccg actactacga cccgactctc aaggagcgga
     1501 atagccgagc tccagaactg ggacgctttt tccttccacc gaatcgatct gatggacgag
     1561 ccgttaccgc tgctcatgga cggagcggag gtgatctacc acctggctgg ccagccagga
     1621 gtccgcccct catgggatcg tgatttccgc aatacgtcac tcgcaacgtg ctggccacgc
     1681 ggttttggaa gctgctaagg gccgcccttt gcgttgaggc ccaccccact gcagagacgt
     1741 tgcggcacct acgtgagcta taccgaacaa ccttttgact tcacctatgc attagacgcg
     1801 gtcgccgcca tgcaaaccgc agcctgctcg gaattcacca ggattgccaa catcggcggc
     1861 ggtaaccaag tgtcgataaa ccaagtgatc gccacacagg cgccgacatc acgctggcca
     1921 ggactgcatt cggctacacc ccaacggtgg gcttgaccga cgggctggct gccatggtcg
     1981 cacccgcacc ggtcgcaggc atgagctctc cggcgaggtc ctctgaccca aatcggtctc
     2041 cacagtgatg cgcgcggcta ctgtcgagca catggcccat tcccagcgcc gggaggcact
     2101 ccgcgagtgg ctacatgcgc gggaacttga cgcgctgctg gtcagcgatc tgcttaacct
     2161 tcgctacctc accggattca ccggctctaa cggcgccctg ctagtgcacg ccgacgggga
     2221 cgaggcaagt gtgttctgta ccgatggccg ctaccgcacc caatctgaac agcaggtgtc
     2281 cgacctgccg cggttgatcg agagatcgtc tctgttgcgg ctggcgaaac aggccaccga
     2341 cacagggatt ggtcggctgg gtttcgagag ccatgtggtg acggtggatg ggcacgccgc
     2401 cttggcgaag gtcctcggcc cggacgcgct ggttgccacc tcgcggccgg tggaggcgct
     2461 gcggctgatc aaagacgagg ccgaggtggc cacgctgcgg tccgcgtgcg ccgccgccga
     2521 caccgccctg gccgggctgc tcgccgatga cgggttgcat ccaggtcgca ccgagcgcga
     2581 ggtggcccgt gacttagagg ctcggatggt ggcagcaggt gccgccgggc cgtctttcca
     2641 gaccatcgtg gcttccgggg tgaactcggc ggtgcctcac caccgcccga ccgacgcaca
     2701 gctgcgccgc ggagatctcc tgaagttgga cttcggtgcg ctggtcgagg gctaccactc
     2761 cgacatgacc cgcaccgtgg tgctcgggca accggctgca tggcagcgcg agctctatga
     2821 cctggtcgcc gcggcacagg ccgcagggcg ggcaggcctg cgggccgggg ccaacgtccg
     2881 cgacgtcgac acggccgccc gggaggtgat cgcccaggcg ggacatggtg agaacttcgt
     2941 gcatggtctc gggcacggcg tcggcctgca aatccacgag gctccggcgt tgtcgcagtt
     3001 cggggtcggt acactggagg caggcatggc cgtcaccgtc gagccgggtg tctacctggc
     3061 cggtcggggc ggcgtgcgta tcgaggacac cctcgtcgtt gccgagggcg aaccagaact
     3121 cctcaccttg accacgaagg acctcgtggt cgtgccctgc tgacaatgac cttgctgaac
     3181 ttgctggcgg tccaccagct atgaccgggg agtgacaggc tgacgtggcc accaccaacg
     3241 acctcaagaa tggacttgtg ctcaacctcg acggccagct gtggtcgatc gtgaacttcc
     3301 agcacgtcaa accaggcaag ggcggcgctt ttgtccgaac taccttgaag aacgtgctct
     3361 ctggcaaggt cgtggacaaa acgttcaatg ccggcaccaa ggttgacacc gctaccgtcg
     3421 accggcgtga tatgacctat ctgtatgcag atggcccgga tttcgttttt atggactccg
     3481 acacctatga ccagatcacc attcccggcg acgtggtcgg agacgcggcg agatacttgc
     3541 tggacaatca gacggcgctg gtcgccatcc atgagggcac cccgctctac attgagctgc
     3601 ccacctcggt ggagttggtg atctcgcaca ccgaccccgg tttgcagggg gatcggtcga
     3661 ccggcggcac caagcccgcc acgctggaaa ccggtgcgga gatccaggtg ccgctgttcg
     3721 tcagcaccgg cgagcgggtc aaggtcgata cccgggatgg gcgctacctc ggccgcgtta
     3781 gtagctgacg tgggcgctcg cagtaaggca cgcaaacgcg ccgtcgacat ccttttcgaa
     3841 tccgacctgc gcgggctgga cccgctagcg ctgctcgcgg agcgggtcgg agcaccggag
     3901 ctgcctccgg tcagcgacta cacggtttcg ttggtgcacg gagtggttga acatggcgcc
     3961 gacatcgaca agttgctggc tgatcaagcc catggctggg ctctcacgcg gatgcccgca
     4021 gtggaccggg cggtgctccg gttgggcgta ttcgagctgc tgttctctga cgaggtggac
     4081 gacgcagtgg ccatcgatga ggccatcgaa ctcgccaagc tgctgtccac tgacgactcc
     4141 ccgcggttcg tcaacggcgt gctgggtgcg ttggctgcgc tgccgcgcag ctcgtgatca
     4201 gcgccggccg gtcagatcag gcctcttctt tgtccttgac cgggcgagcc tcagggggca
     4261 gcacacccca gccgatcagc tgctcggtga gatcgcctgg cgacatgtcg tagatgattg
     4321 ccagtgaccg caggtcttcg gtacggatgg acagcacctt gccgttgtag tcaccacgct
     4381 ggctttggat cgtcgcggcg taacgagcca acggaccgac cttgtcgacc ggcaactgct
     4441 gcagacgctc gaggttgatt acgatcttgg ttgccggttc gctgccagac gagacccggc
     4501 cctccggcaa cagctcgggt accggtacgc cgtagaagtc ggcaagttcg gcgagcttct
     4561 gaaccgtgac ggcccggtcg ccgcgctcgt aggagccgac caccacagct ttccagcggc
     4621 ccgccgactt ctgctcgacc ccgtgcagcg acaagccttg ctgctgacgg atgccgcgca
     4681 atttggaccc cagtgccttg gcatagtcgc ccatctggcc ccttctcctt cttcagaccc
     4741 cgaccagtca acgccttggg gcgccccgcg aaaatcggga tgatacgg
//
LOCUS       DASVXZ010000588         5274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_512294, whole genome shotgun sequence.
ACCESSION   DASVXZ010000588 DASVXZ010000000
VERSION     DASVXZ010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5274
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512294"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VF788_12280"
     CDS             <1..563
                     /locus_tag="VF788_12280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HEX8934942.1"
                     /translation="ARNAVLALATAEAFFGAGGNLSLDIDAVRDAFATVTVPGRLERV
                     RTAPSVFLDGAHNPHGAQALASALREEFAFRRLVAVVGVMRDKDARGILAELEPVVDE
                     VVLTGIGSPRAMGIDDLTAAAQEIFDVSRWRAEARLPDAIKVAIDSASDATDPDPAGV
                     SGVGVIITGSVAMVGAARTLFGRDPQ"
     gene            560..928
                     /locus_tag="VF788_12285"
     CDS             560..928
                     /locus_tag="VF788_12285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4233 domain-containing protein"
                     /protein_id="HEX8934943.1"
                     /translation="MSDPPVQQDSLRGLRGIFAGTLVLEAIVVGLAFLVVGRLDGGVG
                     GPAGWYTGGLALAMVLAAFVQRRSWGLGLALSLQAAMVLGWFAHPALGGLGLVFVLVW
                     GYLLYIRRAVSRQTASTSQS"
     gene            1025..1435
                     /gene="ndk"
                     /locus_tag="VF788_12290"
     CDS             1025..1435
                     /gene="ndk"
                     /locus_tag="VF788_12290"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEX8934944.1"
                     /translation="MSERTLVLVKPDGVSRGLVGEVIARIERKGLTLAALELRMVPRD
                     LAEQHYAEHVDRPFFGSLLEFITSAPVVAAVVEGERAVAAFRQLAGATDPVDKAAPGS
                     IRGDFALEVQSNLVHGSDSVDSAKREIALWFPEL"
     gene            1510..2436
                     /locus_tag="VF788_12295"
     CDS             1510..2436
                     /locus_tag="VF788_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8934945.1"
                     /translation="MSDSLVLACGLRKRFGTFEAVRGIAFDVRAGEVFGFLGPNSAGK
                     SSTMRMIGCVSPRSAGELQVLGMDPDADGPRIRARLGVVPQQDNLDVELPVRDNLYVY
                     GRYFGMSRAAARAKTTELLDFVQLTNRAADPVEQLSGGMKRRLTIARSLVNDPELMLL
                     DEPTTGLDPQARHLLWNRLFRLKQQGVTLIITTHYMDEAEQLCDRLVVMDGGLIVAEG
                     SPRELIVRYSTREVLELRFAPDAQQGWQEKLTDLADRVEELPDRLLLYAPDGEAVLAA
                     ASQRGARPLSTLVRRSTLEDVFLRLTGRTLVD"
     gene            2436..3266
                     /locus_tag="VF788_12300"
     CDS             2436..3266
                     /locus_tag="VF788_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934946.1"
                     /translation="MTRGSVIAHFPSRTLTGWAGPLRVVEGLWTWYRRNWRATAISSL
                     LQPLLMLVAFGVGFGSLIDTSARAAQATGSVPYLGYLAPALLTVSAVQTAAFESSYPI
                     LSSFKWRRTYEAIVATPITPGQVAVGQLTWITLRLTMSGAVYLVVIALFGAVRGTGVL
                     AALVFAVLCGMAFSAPPLAFSAAQETEGGAFTAIFRFVVLPMTLFSGTFFPISQLPSV
                     VQPVAWISPLWHGTELARGAVLGTLRAWPAAVHLAYLMVLLVVGVRLTCWQYRVTLTR
                     "
     gene            3263..4108
                     /locus_tag="VF788_12305"
     CDS             3263..4108
                     /locus_tag="VF788_12305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934947.1"
                     /translation="MNALRELSRPVDPPRAGLLLRVLPPGLYAGRARMLVVRSALASR
                     SIWLAIVSGFFEPLFFLVAMGQGLGSLVGTVVGPAGQQLSYAAFIAPGLLAASAMNGA
                     VYDATFSFFIKLKYAKLYDAMLATPLGPVDIALGEIGWALLRGGMYSAGFLSVMLAAG
                     LIFSPWALLALPAALFVAFAFAAIGIAATSFMRSWQDFDLVQLVVLPMFLFSATFFPL
                     SVYAPRVRWLVQAFPLYHAVALMRGLTTGVVGWPALGHLAYFVVMAALGLVVASRRLK
                     ILLLR"
     gene            4141..>5274
                     /locus_tag="VF788_12310"
     CDS             4141..>5274
                     /locus_tag="VF788_12310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX8934948.1"
                     /translation="MAITSVFERLEPLLARVSKPVQYVGGELNATVKDWDTVTVRWAL
                     MYPDAYEVGVPNQGIMILYEVLNEQPDVLAERTYAVWPDLEELMRQHDVPQFTVESHR
                     PVGAFDVLGVSFATELGYTNLLTALDLAGIPLHAEHRTDDHPVVIAGGHAAFNPEPIA
                     DFIDAAVLGDGEEAVLEITEVLREWKEQGRPGGRRELLSRLAATDGVYQPGSYEVSYL
                     PDGRIAQIARKTERAPQRVAKRTTMDLDEWPYPKQPLVPIAESVHERMSVEIFRGCTR
                     GCRFCQAGMITRPVRERSIQGIGEMVEQGLKTSGFSEVGLLSLSSADHSEIGEITKSL
                     ADRYEGTGTGLSLPSTRVDAFNIDLANEISRNGRRSGLTFAPEG"
BASE COUNT          757 a         1678 c         1815 g         1024 t
ORIGIN      
        1 aggctcgcaa tgccgtgctt gccctggcta ccgcggaggc gtttttcggc gcgggaggca
       61 atctgtcgct ggacatcgat gcggtacgtg acgctttcgc cacggtgacg gttccgggac
      121 ggcttgagcg ggtccgcacg gcgccctcgg tgttcttgga tggcgcgcac aacccgcacg
      181 gtgcgcaggc cctggcgtcc gctctccgtg aggaattcgc tttccgcagg ctggtcgctg
      241 tggtgggagt gatgcgggac aaggacgccc gcggcatcct tgccgagctc gagccggtgg
      301 tcgacgaggt cgtcctcacc ggcattggct cgccgcgcgc gatgggcatc gacgacctca
      361 ccgcggcggc gcaggagatt ttcgacgtct cacggtggcg agccgaggct cgcttacctg
      421 acgcgatcaa agtggccatc gactcggcta gtgatgccac tgatccagat cccgctggtg
      481 tttcgggtgt cggtgtcatc attaccggct cggtggcgat ggtcggtgcg gcgcgcaccc
      541 tgttcggccg agatccgcag tgagcgaccc gccggtccag caggattcac tacgtggatt
      601 gcgcggcatc ttcgccggca cgctggtact ggaagcgatt gtcgtcgggc tcgctttcct
      661 cgtcgtcggc cggctcgatg gcggggtggg tggcccagcc ggctggtata cgggtggtct
      721 ggccctggcg atggtcctcg cggcgttcgt ccagcgccgc tcgtggggcc tcgggcttgc
      781 cctcagtctg caggccgcga tggtactcgg ctggttcgcg caccctgcgc tgggcgggct
      841 gggcctggtc ttcgtgctgg tctggggcta cttgctgtac atacgtcggg cggtgtcgcg
      901 ccagactgcc agtacatctc agtcgtaacg gtgggaacta ccatagaact catagctcca
      961 gcgatcggtc gctaggctcg tcgcgtccga tcaccccctt acctcctgag gagaacgagc
     1021 tgtcgtgagc gagcgcaccc tggtcctggt caagcccgac ggcgtcagcc gcggcctggt
     1081 gggcgaagtg atcgccagga tcgaacgcaa gggcttgacc ctggccgcgt tggaactgcg
     1141 catggtcccg cgcgatctgg ccgagcaaca ctatgcagag cacgtggaca gaccgttctt
     1201 cggctcgttg ctggagttca tcacctcagc cccggtggtg gccgccgtgg tggaggggga
     1261 gcgcgctgtg gcggccttcc ggcagttggc cggcgcaacg gatccggtgg acaaggcagc
     1321 gccggggtcg atccgcggtg acttcgcgct ggaggtccag tcaaacctgg tgcacggatc
     1381 ggactcggtc gactccgcca agcgggagat cgcgctgtgg ttccctgagc tgtaacgcag
     1441 cgatgccgta ctggcaacag gccgaaaagc ggtcgggagt tgtcggaggc gcccggtagc
     1501 gtcgaagtcg tgtccgattc cctggttctg gcgtgtggcc tacgcaagcg gttcggcacg
     1561 ttcgaggcgg tccgggggat cgcctttgac gtccgggcgg gggaggtgtt cggtttcctg
     1621 gggcccaata gcgccggtaa gtcctccacc atgcgcatga tcggatgcgt gtccccgcgc
     1681 agcgcgggtg agcttcaggt gctcggcatg gacccggatg ctgacggccc gcggatccgt
     1741 gctcgcctgg gagtggtgcc tcagcaggac aacctggacg tcgagttgcc ggtgcgggac
     1801 aacctgtacg tctatggccg ctatttcggc atgtctcggg ctgcagcgcg ggccaagacc
     1861 accgagctgt tggatttcgt gcagctcacc aatcgggccg ccgaccccgt cgagcagctc
     1921 tcgggcggca tgaaacggcg gctgaccatc gcccggtccc tggtcaacga tccagagctg
     1981 atgttgctcg atgaaccgac caccgggctg gacccgcaag cccgtcacct gctgtggaac
     2041 cgactgttcc ggcttaaaca acaaggcgtg acgctgatca tcaccaccca ctacatggat
     2101 gaggccgagc agctgtgcga ccggcttgtc gtgatggacg gcggcctgat cgtcgctgaa
     2161 ggctcgccgc gtgagctcat cgtccgctac tccacccgtg aggtgcttga actgcgcttc
     2221 gcgccggatg cgcagcaagg ctggcaggag aagctcactg atctggctga tcgcgtcgag
     2281 gagctacccg atcggttact gctctacgcg cctgatggtg aggcggtgct ggccgccgcg
     2341 agccagcgcg gagcgcggcc actgtccacc ctggtccggc gctccactct ggaagatgtg
     2401 tttcttcggt tgacgggccg aacgttggtg gactgatgac tcgcggatcg gtgattgcgc
     2461 actttccgag ccgaacgctc actgggtggg caggcccatt acgtgttgtt gaggggttgt
     2521 ggacctggta tcgccgcaac tggcgagcga cggcgatctc cagtctgctc cagccgctgc
     2581 tcatgctcgt ggccttcggg gtcggcttcg gcagcctcat cgatacgagc gcgcgggcgg
     2641 ctcaggccac cggtagcgtg ccctatctgg ggtacctcgc gcccgcgctg ctgacggtca
     2701 gcgccgtgca gaccgcggcc ttcgaatcga gctacccgat cttgtcctca ttcaagtggc
     2761 ggcgtaccta tgaggcgatc gtggccaccc cgatcacacc agggcaggtg gcggttggcc
     2821 agctgacctg gatcacgctc cggctgacca tgtcgggtgc tgtctacctg gtggtgatcg
     2881 ccctgttcgg tgcggtccgc ggcaccggag tgctggccgc gctggtgttc gccgtgctct
     2941 gcggcatggc gttcagcgcg ccgccgctgg cgttctcggc ggcccaagaa acggaaggcg
     3001 gggcgttcac ggccatcttc aggttcgtgg tgctgccgat gacgttgttc tccgggacgt
     3061 tcttcccgat ctctcagcta ccgagtgtgg tccagccagt agcctggatc agcccactgt
     3121 ggcacggcac cgaactggcc cgcggcgccg tgttgggcac gctgcgggcg tggcccgcag
     3181 ccgtgcacct cgcctacctg atggtgctgc ttgttgtggg cgtgcgcctg acgtgctggc
     3241 agtaccgcgt gacgctcacc cgatgaacgc gctacgggaa ctctcccggc cggtcgaccc
     3301 gccacgcgca ggcttgttgc ttcgggtgtt gccgccgggc ttgtacgccg gccgggcccg
     3361 gatgctcgtc gtacgctcgg cgctggcatc acgaagcatc tggctggcca tcgtctcggg
     3421 gttcttcgaa ccgctgttct tcctggtggc gatgggtcaa ggactcggta gcctggtcgg
     3481 taccgtggta gggccagccg ggcagcagct gagctatgcg gcgttcatcg cgcccgggct
     3541 gctggcggcg tcggcgatga acggtgcggt gtatgacgcg acgttcagct ttttcatcaa
     3601 gctgaagtac gccaagctct acgacgcgat gctcgccacc ccgctgggcc cggtggacat
     3661 cgcgctcggg gagatcggct gggcgttgct ccggggcggg atgtactccg ccggcttcct
     3721 ctcggtcatg ctggccgccg ggttgatctt ctctccgtgg gcgttgctgg cgctgcccgc
     3781 tgcgctgttc gtggccttcg cgttcgcggc gatcgggatc gcggccacct cgttcatgcg
     3841 ctcctggcag gatttcgatc tggtgcagct ggtggtgctg ccgatgttcc tgttctcggc
     3901 gaccttcttc ccgctctcgg tatacgcacc ccgggtgcgg tggctggtgc aggcgttccc
     3961 gctctaccac gcggtggctc tgatgcgcgg cctgaccacc ggcgtcgttg gctggccggc
     4021 tctcggccat ctggcgtact tcgtggtgat ggccgccctg gggctggtgg tggcctcccg
     4081 ccgcttgaag atcctcctcc tgcggtaggg gcatgttcgg tgactactac cctgggcggt
     4141 atggcgatca catcggtgtt cgagcggctc gagccactgc tggcccgggt gtccaagccg
     4201 gtgcagtatg tcggaggcga gctcaacgcc acggtgaagg actgggacac cgtcacagtg
     4261 cgctgggcat tgatgtaccc cgacgcctat gaggtcgggg tacccaacca gggaatcatg
     4321 atcctctacg aggtgctcaa cgagcagccc gacgtgctcg ccgaacggac ctacgcggtc
     4381 tggccggacc tggaagaact gatgcgtcag cacgatgtcc cgcaattcac cgtggagtcc
     4441 caccgaccgg tcggggcctt cgacgtgctc ggggtgtcct tcgccaccga actcggttac
     4501 accaacctgc tcaccgcgct cgacctcgcc gggatcccgc tgcacgccga gcaccgcacc
     4561 gatgaccatc ccgttgtcat cgccggtggc cacgcggcgt tcaatcccga gccgatcgct
     4621 gacttcatcg atgccgcggt cttgggcgac ggagaggagg ccgtcctcga gatcaccgaa
     4681 gttctccggg agtggaagga gcagggaagg cccggcgggc gtcgcgaact gctgagcagg
     4741 ctggctgcca ccgacggcgt ctaccagccg ggttcctatg aggtcagtta cctgcctgat
     4801 ggccggatcg cccagatcgc tcgcaaaacc gaacgagctc cgcagcgggt ggccaaacgc
     4861 accacgatgg atctcgacga gtggccttac cccaagcagc ccctggtgcc gatcgcggag
     4921 agtgtgcatg agcggatgag cgtggagatc ttccgcggtt gcacccgcgg ttgccggttc
     4981 tgccaggctg ggatgatcac ccgcccggtg cgggaacgat cgatccaggg catcggcgag
     5041 atggtcgagc aaggcctgaa gaccagcggg ttcagcgagg tcgggttact gtcgctgtcc
     5101 agtgccgacc actcggagat cggcgagatc accaaaagtc tggccgaccg ctacgagggc
     5161 accggcaccg gcctgagcct gccctcgacc cgggtggacg ccttcaatat cgacctcgcc
     5221 aacgagatct cccgtaacgg ccgtcgctcc gggttgacct tcgcccccga aggc
//
LOCUS       DASVXZ010000589         7028 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_512313, whole genome shotgun sequence.
ACCESSION   DASVXZ010000589 DASVXZ010000000
VERSION     DASVXZ010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7028
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512313"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /gene="pstA"
                     /locus_tag="VF788_12315"
     CDS             <1..739
                     /gene="pstA"
                     /locus_tag="VF788_12315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEX8934949.1"
                     /translation="VILSAGWWSQSLSGLLGRQQGGGVYHAIYGTLITSLVCAVVSVP
                     IGMMVAVYLVEYGGRTRLARTTTFMVDILTGVPSIVAALFVYALWIAILGFPRSALAV
                     SFALVMLMVPVVIRSTEEMLKIVPDELREASYALGVPKWKTIMRVVIPTALSGILSGT
                     MLALARVMGETAPVLVLVAYAPFINYNLFGGNMATLPLLMTVERNNPTDAGADRIWGS
                     ALTLILIIALLGVLATVLSRVFAVKNR"
     gene            complement(756..1154)
                     /locus_tag="VF788_12320"
     CDS             complement(756..1154)
                     /locus_tag="VF788_12320"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8934950.1"
                     /translation="MSAVESWGQANIPEPGRYLSVDPRTLGRLRILRVGDVELQLDGH
                     RLVVRGTPVHLPHKEFVILEQLMDNAGRVVTRRELLDNAWGPDRADVRNYLEVHIRRL
                     RTKIESDLDRPTRIRTVRGVGYIFDLPQSD"
     gene            complement(1154..1930)
                     /gene="pstB"
                     /locus_tag="VF788_12325"
     CDS             complement(1154..1930)
                     /gene="pstB"
                     /locus_tag="VF788_12325"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEX8934951.1"
                     /translation="MAKNVRMKDVDIYYGKFHAVQGVSLSVSPQSVTAFIGPSGCGKS
                     TVLRTINRMHEVIPGARVAGRVELDGEDIYGPGVDPVDVRRAVGMVFQRPNPFPTMSI
                     RDNVVAGLKLQGTRNKARLDEVAERSLRGASLWSEVKDRLDKPGGGLSGGQQQRLCIA
                     RAIAVQPDVLLMDEPCSALDPISTLAIEELIGELKKDYTIVIVTHNMQQAARVSDRTG
                     FFNLPGADKPGRLVELDDTEKIFSNPREKATEDYISGRFG"
     gene            complement(2379..2714)
                     /locus_tag="VF788_12330"
     CDS             complement(2379..2714)
                     /locus_tag="VF788_12330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934952.1"
                     /translation="MSQEHKNNPQSDGTPDGGNSTLGAMRGGFGGWTAWSEEEHTKTD
                     IRECTDQHCMNVEVNCGFQGLDPGSPLSQSAGVSDDLRAAWRAKMAGEGKPMTGTQSL
                     REIVFGPAS"
     gene            2979..4385
                     /locus_tag="VF788_12335"
     CDS             2979..4385
                     /locus_tag="VF788_12335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8934953.1"
                     /translation="MTQIMGIGALRTELTGRVIDASDIDYDTARSVWNGDIDRRPAAI
                     VRCSDNSDVAAAIAFARQQGLQISVRGGGHGFWGAAVPAGGLVIDLSELRGVSVDPGS
                     RRAWCGGGATLADLDAATQRHGLAVTGGTISHTGVGGLTLGGGFGWLVHKAGLTVDNL
                     LSAEVVTPDGRTLVVSADEHPDLFWGLRGGGGNFGVVTGFEFRLHEVGPLVYLGLFFW
                     GLEQSTEALRLGREVAACLPRDAGLLLAAGLTAPPAPFVPERHRGTPGIAMLVAGFGS
                     AQDHARLIAPIREALPPLFEFVTPLPYVELQKMLDESAPWGIHAYEKSLNLYQLDDEA
                     IAVLTERIPGKSSPMSFIPIFSVGGAFADVGEQETAFGGSRATRFVVNVTAIAPNAEL
                     LAADRSWARSVWQALAAHTNRTGGYVNFMAEDDADRVQAAYGPVKYQRLARIKARYDP
                     DNVFRMNANIKPAAHAER"
     gene            4426..4968
                     /locus_tag="VF788_12340"
     CDS             4426..4968
                     /locus_tag="VF788_12340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020670113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8934954.1"
                     /translation="MAELLRTHRLLVRDWSVADAEAALKLYGHDTVMSWLHEPNRIPN
                     ADAMHGVLHSWITEQREMSPGTGRWALVLLDGGMLVGGVSLLPMPVPEADVEIEYQLA
                     PEYWGRGYVTEAARALAHWAFEHSLVELFALVNPDNVRAAATARRIGMEWVGESDKYH
                     GTRLQVFRLRPDDLASMGQQ"
     gene            complement(4973..5425)
                     /locus_tag="VF788_12345"
     CDS             complement(4973..5425)
                     /locus_tag="VF788_12345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX8934955.1"
                     /translation="MRVFTGADELLAAAGEQLGTSDWMTIDQQRVNAFADATEDHQWI
                     HIDPQRAATGPFGTTIAHGFLTLSLLPYLIFQTYRVEGAAMTINYGLNKVRFPAPVPV
                     GSTVRAEVVLAEATEVTGGLQLVLRATMQIEGGAKPGCVADWVTRIYS"
     gene            complement(5403..6476)
                     /locus_tag="VF788_12350"
     CDS             complement(5403..6476)
                     /locus_tag="VF788_12350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934956.1"
                     /translation="MSTVPTAMIFDDHDVRDDWNTSAAWRAWITAQAWWPDRIRGALA
                     AYWVYQHIGNLCAQQRQTDPIWCAVQDAEGDAWPVLRKMADAADADPSSVRWSYRWDI
                     DGLRLVVMDTRCGRVLTEGRRAMLDDDEFSWVENAVSEDAHQAEHVLVGSSLPWLLAP
                     ALHDVQAANEAACARGSALAERIRQALDLEHWAAFRNSFDRLATLLRGVAVGPRAPAT
                     ISVLSGDVHHSYVARADVDGAPVYQLVCSPVHHSVPWYATVALRAAWNAALGKVVRNV
                     VRHYGIPDPAVCWRRVSGPAFGNMVATLMFAGRSAELIVEHSGRSGRLEPVFHTELTA
                     GANDPPATEAWGRVINDEGVHRS"
     gene            complement(6508..>7028)
                     /locus_tag="VF788_12355"
     CDS             complement(6508..>7028)
                     /locus_tag="VF788_12355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX8934957.1"
                     /translation="VGTTTAAMWVQTSRPAEVEVLGCRASTFTVCDEHYALVDIDGLE
                     PGSVISYQVYLDGNLVWPRPGSPWPESRIRTRGTGMGVQVVFGSCRRARGDAPRSMAI
                     DGADALDAYADRMAATGPEALPEALLLLGDQVYADDPAPQTRRWLDRHRDTTTPPGHE
                     VADFTEYSRAVP"
BASE COUNT         1280 a         2288 c         2187 g         1273 t
ORIGIN      
        1 tgtcatcttg agcgcgggct ggtggagtca atccctgtcc ggcctgctcg gacggcagca
       61 gggtggcggg gtctaccacg ccatttacgg cacgctgatc accagtctgg tctgtgcggt
      121 agtgtcggtt cctatcggga tgatggtcgc cgtgtatctc gtcgaatacg gcgggcgcac
      181 ccgactggcg cggaccacca cgttcatggt ggacatcctg accggtgttc cgtcgatcgt
      241 ggcggcactg ttcgtctatg cactctggat cgcgatcctg ggctttcccc gtagtgcgct
      301 ggcggtatcg ttcgcgttag tcatgctcat ggttccggtg gtcattcgct ctaccgaaga
      361 aatgctcaag atcgtccctg acgagcttcg ggaggcgtca tacgccctcg gcgtcccaaa
      421 atggaaaacg atcatgcggg tagttatccc gacggcgctc tccggtattc tcagcggcac
      481 catgctggcg ctggcgcgag tgatgggaga aacggcgcca gtgctggtcc tggtcgccta
      541 cgcaccgttc atcaattaca acctcttcgg cgggaacatg gcgacattgc cactgctgat
      601 gacagtggag cgaaataacc ctaccgacgc cggagccgac cggatctggg gttcggcact
      661 caccctgatc ctcatcatcg cgctactcgg cgtgctcgca acggtcctat ctcgagtgtt
      721 cgcagtgaag aacaggtgag atgaacggct cgactctaat cgctctgcgg taagtcaaaa
      781 atgtagccaa cgccccggac agttcgaata cgagtcggcc tgtccaggtc actctcgatc
      841 ttcgtccgga gccgacgaat gtgtacctcg aggtagttac ggacgtccgc ccgatccgga
      901 ccccatgcgt tgtcgagcaa ctctcgccgg gtgacaaccc gaccggcatt gtccatcagc
      961 tgctctaaaa taacgaattc cttgtgcggc agatgaactg gtgttccccg cacaacgagc
     1021 cggtgcccgt cgagttgcaa ctccacgtcg ccgactcgca aaatccgtag ccggccgaga
     1081 gtccgaggat cgaccgacag gtaacgcccc ggctccggta tgttcgcttg cccccagctc
     1141 tcgaccgccg acatcagccg aaccgccccg agatgtagtc ctccgtagcc ttttctcggg
     1201 ggttggagaa gattttctcc gtgtcgtcga gctcgacgag gcgtccgggc ttgtctgcgc
     1261 cgggtagatt gaagaatccg gttcggtcgg atacgcgagc ggcctgctgc atgttatggg
     1321 tcacaatgac gatcgtgtag tccttcttca gctcaccgat cagctcctcg atcgccagtg
     1381 tggagatcgg gtccagcgct gagcagggct catccatcag caggacatca ggctgcaccg
     1441 cgatggcgcg cgcgatgcac aaccgctgct gttgcccgcc ggacaggcca ccgccgggct
     1501 tgtcgagccg gtccttgacc tcactccata ggctcgcgcc gcgcaacgag cgctcggcca
     1561 cctcatccaa ccgagctttg ttccgggtcc cctggagctt gagcccggcg accacgttgt
     1621 cccggatcga catggtcgga aacggattgg gccgctggaa caccatgccg accgcgcgac
     1681 gcacgtccac cggatcaaca ccgggcccgt agatgtcctc cccgtcaagc tctacccgac
     1741 ctgccacgcg cgctcctggg atcacctcat gcatcctgtt gatcgtgcgc agcacggtcg
     1801 atttgccgca accagagggc ccgatgaacg cggtgaccga ctgcggtgac acggacaagc
     1861 tcacgccctg cacagcgtga aacttgccgt agtagatatc gacgtccttc attcgaacgt
     1921 tcttcgccat agcaggtcca attttagtta cgagcgatca gaaccagcgg cgcggcgcca
     1981 gttgaccgct gtgtttggtt ggcgaagagc ggccgaggta actcaagctt cacgaaacct
     2041 ccgaagatgg gaagcaagtg tggggacagc tacagcccaa cggccgctgg cgaaacctat
     2101 gcagcgtcga tagatgcgaa ctaaccagct ggtaaacgaa ggatgaacgt tcccccacaa
     2161 ggataccaat catcacccgt atcgcctaat caggattacg ggactaacaa tctgtgattg
     2221 aacgatatcc cgccggaatc cggagggggt accggcggga tcaggcgaac gcaccagcga
     2281 ttaactcaac cgcaggccag agttcggggc ggaccgtcag agcggcatcc ggcaggcaac
     2341 ggaccttcgc cgggcgcaca ccaatcagaa catcatggct aagacgccgg accaaatacg
     2401 atttctctta ggctctgggt gcccgtcatc ggcttaccct cacctgccat cttcgcccgc
     2461 caggctgcgc gaagatcgtc actcacgccc gcggactggg acagcggcga gccgggatcc
     2521 agaccctgaa aaccgcaatt cacctcgacg ttcatgcagt gctggtcggt gcactccctg
     2581 atgtctgtct tggtgtgctc ttcctcactc cacgcggtcc agccaccgaa acccccacgc
     2641 atcgccccga gcgtcgagtt gccgccgtcc ggtgtgccgt cggactgcgg gttattctta
     2701 tgctcttggc tcatattgag cattctatca gccatgggtt cctgaagccg tgtgtcgcag
     2761 cgtgcgccgg gagtcaccga ccgcgacttg cgccgccgat cgccgtaagg ccctcgcctc
     2821 gcatcctcca gtcaacagac ttgacacctc gtcacgattc actctttagg ctgacgtaac
     2881 ctcgactcgt atggcttagc gtcaggtctt tcgaagtggt ctgcgtggaa catctgcccc
     2941 gtgaattcgc cacttcacct tgtcgtggag gttcggcaat gacgcaaatc atgggcatcg
     3001 gcgcgctccg caccgaactc accggccggg tgatcgacgc gtccgacatc gactacgaca
     3061 ccgcgcgctc ggtctggaac ggagacatcg atcgccggcc ggcggctatc gtccggtgct
     3121 ctgacaactc cgacgtcgca gcggcgatcg ctttcgcccg ccagcaaggc ttgcagatct
     3181 cggtgcgagg cggcgggcac gggttctggg gagccgcagt accggcgggc ggcttggtta
     3241 tcgacctcag cgaactgcgg ggcgtgtcgg tggaccctgg cagccgccgg gcctggtgcg
     3301 gtggtggcgc cactcttgcg gatctggatg ccgctactca gcggcatggc ctcgccgtga
     3361 ccggggggac gatcagtcac accggtgtgg gcggtctgac gctgggcggt gggttcggct
     3421 ggctcgtcca taaggctggg ctgaccgtgg acaacctgct gtccgcagaa gtggtcaccc
     3481 ccgacggtcg cacactggtg gtctccgccg acgagcatcc cgacctgttc tgggggctgc
     3541 gaggcggtgg gggcaacttc ggcgtcgtca ccggctttga gttccggcta cacgaggtgg
     3601 gtccattggt atacctcggt ctgttcttct gggggctgga gcaaagcacc gaggcacttc
     3661 ggctcggccg ggaggtagcc gcgtgcctgc ctcgcgatgc ggggctgctg ctggccgccg
     3721 gcctgaccgc gccaccagca cctttcgtgc ctgagcggca ccgcggtacc ccagggatcg
     3781 cgatgctggt cgccggcttc gggtcagccc aggaccacgc tcggctgatc gcaccgatcc
     3841 gggaggcgct gccgccgttg ttcgaattcg tgactccact gccttacgtc gagttgcaga
     3901 agatgctcga cgagtccgca ccgtggggca ttcacgctta tgaaaaaagc cttaacctct
     3961 accagctcga cgacgaggcg atcgccgtac tcaccgaacg cataccgggc aagagttcac
     4021 cgatgtcatt catcccgatc ttctcggtag ggggggcatt cgccgatgtc ggggagcagg
     4081 agaccgcctt cggcggcagc cgggcaacgc ggttcgtggt caacgtaacg gccatcgcgc
     4141 cgaacgctga actgctcgcg gctgaccgat cctgggcgcg atcggtgtgg caggcactag
     4201 ccgcgcatac caaccggacc gggggctacg tcaacttcat ggccgaggac gacgcggatc
     4261 gcgtacaagc agcctacggt ccggtgaagt accagcggct ggctcggatc aaggcgcgtt
     4321 acgacccgga caatgtcttc cggatgaacg cgaacatcaa gccggcagcg cacgccgagc
     4381 gttgacaaga ttcccgggaa acaccgaatc gagtaagttc agctcatggc ggagctgcta
     4441 cggacgcatc ggctcctggt acgggactgg tcggtcgccg acgccgaggc agcattgaaa
     4501 ctctacgggc atgacaccgt catgagctgg ctgcatgagc ccaaccggat tcccaatgcg
     4561 gatgccatgc acggagtgct gcacagttgg atcaccgagc aacgggagat gtcgcctggg
     4621 accggacggt gggcgctggt gctgcttgac gggggcatgt tggtcggtgg ggtgagcttg
     4681 ctgccgatgc cggtgcccga ggcggacgtg gagatcgaat atcaactggc cccggagtac
     4741 tggggccgcg gctacgtcac cgaagccgcc cgggcgctgg cgcactgggc cttcgagcat
     4801 tcgctggtcg aattgttcgc actggtcaac ccggataacg tgcgcgcagc ggccaccgcg
     4861 cggcggatcg gcatggagtg ggtcggcgag agcgacaagt atcacgggac gcgtctgcag
     4921 gtgttccggc tgcgacccga cgaccttgcc agcatgggtc agcagtaaat cctcaggaat
     4981 agatccgggt aacccagtcc gctacgcagc ctggtttcgc gccgccctcg atctgcatcg
     5041 tggcacgcag cacgagctgc agaccgccgg ttacctcggt ggcctcggca aggaccacct
     5101 cggcccgcac cgtcgagccg accggcaccg gggccgggaa acgcaccttg ttcagaccgt
     5161 agttgatggt catcgcggcg ccctcgaccc ggtaggtctg aaagatcaag tatggcagca
     5221 gcgacagggt gaggaagccg tgcgcgatgg tggtgccgaa ggggccggtc gccgcgcgct
     5281 gcggatcgat gtgaatccat tggtggtcct cggtcgcgtc ggcgaaggcg ttgacgcgct
     5341 gctgatcgat agtcatccag tcgctcgtac ccagctgctc gccagccgca gccaacaact
     5401 cgtcagctcc ggtgaacacc ctcatcgttg atcactctcc cccatgcctc ggttgccggc
     5461 ggatcgttcg caccagcggt cagctcagtg tgaaacaccg gttccagccg gccgctacgc
     5521 ccgctgtgct cgacgatgag ctcggcgctg cgacccgcaa acatcagcgt cgccaccatg
     5581 ttgccgaacg cggggccgct gacccggcgc cagcacactg ccggatcggg tatcccgtag
     5641 tggcgcacca cgttgcggac caccttgccc agcgcagcgt tccaggcggc ccgcaacgct
     5701 acagtcgcat accacggaac gctgtggtgc actggcgagc acaccagttg atagacgggt
     5761 gcgccatcga catcggctcg ggccacgtaa ctgtggtgca catctccgga gagcacgctg
     5821 atcgtcgcgg gggcacgcgg cccgaccgcg acccctcgca gcagtgtggc gagccggtcg
     5881 aaagaattgc ggaacgccgc ccagtgctcc agatcgaggg cttgacggat acgctcagca
     5941 agcgcgctac ctcgggcgca ggccgcctca ttggccgcct gaacatcgtg cagcgccggc
     6001 gcgagcaacc atggcagcga gctaccgacc agcacatgct cagcctgatg ggcgtcctcg
     6061 ctgacagcgt tctccaccca ggagaactcg tcgtcatcga gcatcgctcg tcgaccctcg
     6121 gttaacaccc gcccgcagcg ggtgtccatg acaaccagcc gcaacccgtc gatgtcccac
     6181 cggtagctcc acctgactga tgacgggtcg gcgtccgcgg cgtcagccat cttccgcagc
     6241 accggccagg cgtccccctc ggcgtcctgg accgcgcacc agatcgggtc agtctggcgc
     6301 tgctgcgcgc acagattgcc gatgtgttga tagacccaat aggcggccag cgcaccccgg
     6361 atccggtcgg gccaccaagc ctgagcggtg atccaagccc gccacgctgc cgaggtgttc
     6421 cagtcatcgc gcacatcatg atcgtcaaag atcatcgcgg tgggcactgt cgacatcagc
     6481 caccgtaatg gagcgtctga ccagctatca cggtacagcc cgggagtact cggtgaagtc
     6541 agccacctcg tgtcccggtg gggtggtggt gtcccgatgc cggtccaacc agcgccgggt
     6601 ctgcggagct gggtcgtcgg cgtacacctg atcaccaagc agcagcaacg cctccggcag
     6661 ggcttcaggc cccgtggcgg ccatccggtc ggcgtaggca tccagcgcgt cggcaccgtc
     6721 gatggccatg gatcgggggg catcacccct ggcgcgccga caggaaccga aaaccacctg
     6781 aactcccatc ccggtgccgc gggtacggat ccggctctcg ggccacggtg atcccggtcg
     6841 cggccagacc aggttgccat ccagatacac ctgatacgaa atcaccgagc ccggttcgag
     6901 cccgtcgatg tccaccagcg cgtagtgctc atcgcacacg gtgaatgtcg aagcccggca
     6961 accgagcacc tcgacctcgg ccggacgaga ggtctgcacc cacatcgccg ccgttgtcgt
     7021 cccgacgt
//
LOCUS       DASVXZ010000590         7254 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_871922, whole genome shotgun sequence.
ACCESSION   DASVXZ010000590 DASVXZ010000000
VERSION     DASVXZ010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7254
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871922"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1088)
                     /gene="pstS"
                     /locus_tag="VF788_12360"
     CDS             complement(<1..1088)
                     /gene="pstS"
                     /locus_tag="VF788_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEX8934958.1"
                     /translation="MNRKLHGAALALAATTALTLVACGSNPNVGGGTGPSASGPPVKC
                     GGKNNLNGEGSSAQKNAMDVFIQAYQQRCSGQNVAYNPTGSGSGVKQFTAGLVDFGGS
                     DSPLVAADQVAAATKRCQDHPAWNLPLVFGPVALGYNLKGVNNLVLNAETAAKIFNGH
                     ITSWNDPALTALNPGVSLPAKPIRVVFRSDESGTTDNFQLYLQTASKGAWTQGAGKSF
                     KGGVGSGAEKSAGVAQATNSTDGAITYVELSFAQDNKLGIAKIDNGAGPVELSSQSVG
                     KVIDTAKINGDGNNLVLDLNSIYGTTQPGAYPLILATYELVCSQGYPPDVAQALKAFL
                     TVAATDGQANLSEAGYAPLPEAFQKRILA"
     gene            complement(1276..1515)
                     /gene="tatA"
                     /locus_tag="VF788_12365"
     CDS             complement(1276..1515)
                     /gene="tatA"
                     /locus_tag="VF788_12365"
                     /inference="COORDINATES: protein motif:HMM:NF001854.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEX8934959.1"
                     /translation="MGEFSPWHLLIVAAVFMLLFGANKLPQMARSVGQSMRIFKAEAR
                     ALSGEKEPEQLSPTIQQPSTAEPSQVHPQERPPVG"
     gene            1694..3328
                     /locus_tag="VF788_12370"
     CDS             1694..3328
                     /locus_tag="VF788_12370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEX8934960.1"
                     /translation="MAQASVRSTASGSEPGFRRDVGLMALMFVSLGSIIGSGWLLGAL
                     TAATSAGGASIVSWVLAGVIIVLLALVHSELGAAYPLAGGTGRWPRLAFGSLGGFTAG
                     WVAWLQAVTLAPIEVEAALSYLDHKWHGLINDVGALTSTGLAVSTGLMLVFTVINILG
                     VRWLAESNRVTVLWKVAVPVVTVVVLIVVSFQISNFTAGGGFAPYGAHGVFAALPLGV
                     VFALQGFEQAAQIAGEARDPQRNVPRAVIGSVIIGVLLYLALEIAFIGALNPGSLVQG
                     WANPVGKGDFGPYATLATGLGLGWLAAILYVDAFISPAGTGLIYVGTSARLSYALGHS
                     GYVPEGVSRISSRGVPYTSIILAFVVGLICFLPFPSWQSLVGLVTSATVIMYGFAPIT
                     LLALRKADPDRSRPYRLPAAPILAPLAFVAANEIIYWTSWATVEKLMLAIIAGYVLFG
                     ITYATGRPMERPPLDPESLAWIIPWFAGLSVISYLGQYGGTKFIPEWIDLGVVAAFSL
                     VICYVAVARSLSSHRVAAAIAADEHEAAVQPELKTA"
     gene            3359..4444
                     /locus_tag="VF788_12375"
     CDS             3359..4444
                     /locus_tag="VF788_12375"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF010041.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEX8934961.1"
                     /translation="MHVRNVGVEEELLLVDPDSGQPLSLSTAVLRAAPEASDEALTSE
                     LTRQQIETNTRPCASLEELASEVRRWRRAAGDAAELRGARVAALATSPLPVDPSISSS
                     PRYARMVDEFGLIAEEQLTCGCHMHVQIESESEGVAVLDRIRGWLPCLLALSANSPFW
                     QGQDSGYASFRSQVWGRWPSAGPTGLFGSVETYHATTEAMLETETVLDLGMVYFDARL
                     SRQHPTVEVRVADVCLLADDVVLLAALARALVETAARSWRAGVPPAPVRTEVLRLARW
                     RAARSGLDGSLIAPASRPAPASQVIRTLIEHVRPVLEDYGELDVVEELVSTVLERGNG
                     TTAQRQIHRGSGQLTDIVAHAVKATAL"
     gene            4575..5357
                     /locus_tag="VF788_12380"
     CDS             4575..5357
                     /locus_tag="VF788_12380"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004309 - exopolyphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0106411 - XMP 5'-nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEX8934962.1"
                     /translation="MTNDDGIDSPGLAALAAAALRVDLHVVVAAPARQSSGASAGLMA
                     TSQASRTVIERRQLPGLPGIEAYALEAQPGYIVRAALRGWLDPVPELVLSGINHGANV
                     GRAILHSGTVGAALTAGVNGVRGLAISLDVGLHLAQPPHWDTAGYLLPGILAMLTGAP
                     AGTVLTLNVPDRPVEALNELRHATLARFGAVQSRVERVEDGQLHLALVDADTQPEAGS
                     DSALLAAGHPTVTALESVSEASKPVLPEWLASAGQPIAGAAK"
     gene            5354..6115
                     /locus_tag="VF788_12385"
     CDS             5354..6115
                     /locus_tag="VF788_12385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009076673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEX8934963.1"
                     /translation="MSDYPKSIVPSNHVEPVPRRLRGSLGGETVFDTTRAWYVWEWPH
                     YPQYYIPIADVRRDLLVREGAPPSSRGPVEVYGLQVKDVHRLHAARLLTDSSVDGLSG
                     TVRFEWAALDAWFEEDERVFVHPRNPYARVDALRSTRSVRIELDGVALAESSSPVMVF
                     ETGLPTRYYLNRTEVNLAHLVPSGTVTECPYKGTTSACWSVRVGETVYPDLAWCYDFP
                     TRALLPIAGLVAFYNEKVDTVLDGRLLTRPSTPFS"
     gene            6226..6585
                     /locus_tag="VF788_12390"
     CDS             6226..6585
                     /locus_tag="VF788_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020421634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX8934964.1"
                     /translation="MRFMVLVKANEDSEAGVLPSKEDLATMGRYNEELVKAGVMLAGE
                     GLQASSKGARVRFDGDKRIVTDGPFTETKELIAGFWLIQATSKEEAIEWVSRAPFDGG
                     TELEIRQVFEASDFGQG"
     gene            6691..>7254
                     /locus_tag="VF788_12395"
     CDS             6691..>7254
                     /locus_tag="VF788_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8934965.1"
                     /translation="MTACSATHRAIDAVWRIESARVIAGLARIVGDIGLAEELAQDAL
                     VAALEQWPESGVPRNPGAWLTAIAKHRAIDHFRRRERLERKINELGHELETGEAGTVP
                     DFDAAVDDDIGDDLLRLVFTACHPVLPTEARVALTLRLLGGLKTDEIARAFLVSESTV
                     AQRIVRAKRTLAQARVPFEVPQGAERAT"
BASE COUNT         1142 a         2304 c         2453 g         1355 t
ORIGIN      
        1 gccagtatcc gtttttggaa agcttctgga agtggtgcat aaccagcctc ggagagattg
       61 gcctgcccat cggttgcggc caccgtcagg aacgccttga gggcttgagc gacgtcaggc
      121 gggtaaccct gcgagcaaac caactcgtag gtggcgagaa tcagcgggta tgcgcccggt
      181 tgggtggtcc cgtagatcga gttgaggtcc agcaccaggt tgttcccatc gccgttgatc
      241 ttcgcggtgt cgatcacctt gccgacgctc tggctgctca gctcgaccgg acctgcaccg
      301 ttgtcgatct tggcgattcc cagcttgttg tcctgtgcga aggacagctc gacgtaggtg
      361 atggcaccgt cggtgctgtt cgtcgcctgc gcgactcccg ccgacttctc cgcaccactt
      421 ccgaccccgc ccttgaagga cttccccgca ccctgagtcc aggcaccctt cgaggcggtt
      481 tggagataga gctggaagtt gtctgtggtg ccggactcgt ccgaacggaa gaccactcga
      541 atcggtttcg ccggcaggct gacgcctgga ttgagcgccg tgagcgcggg gtcattccag
      601 ctggtgatat gaccgttgaa tattttggcc gccgtctccg cgttgagtac gaggttattc
      661 acccccttca ggttgtaacc cagggctacc gggccgaaga ccagcgggag gttccaggcc
      721 gggtggtcct gacagcgctt cgtggccgcg gcgacctggt cggcagccac caggggggag
      781 tcgctgccac cgaagtcaac cagtccggca gtgaattgct tgacaccgga gcccgagccg
      841 gtcgggttgt aagccacgtt ttggcccgag cagcgttgct ggtaggcctg gatgaagacg
      901 tccatcgcgt ttttctgtgc ggaggagccc tcgccgttga gattattctt gcctccgcat
      961 ttgacgggtg gtccgcttgc agacgggccg gtgcccccac cgacattcgg gttactgcca
     1021 caggccacca acgtcagcgc ggtggttgcc gccagcgcga gcgcggcacc gtgcagctta
     1081 cgattcacca gggtcctccg gtctcgatcg cgagaacgcg gctcggggaa gccgctcctg
     1141 ggacggtaag gacacccggt ggacgttgta cccctttaaa gcaaacaaaa gatgaacagc
     1201 ctcaggggat gcgaaaccac cacactgtgt gaatgaaccg gcgaagtaaa ccgggtgaag
     1261 ttaggccgcg cgaagctagc cgacgggagg ccgctcttgc gggtggacct gggaaggctc
     1321 ggccgtggag ggttgctgga tggtaggaga tagctgttcg ggttccttct cgccggatag
     1381 cgcgcgggcc tccgctttga agatccgcat cgattggcct accgagcgtg ccatctgcgg
     1441 cagcttgttc gctccgaaca gcagcatgaa gaccgctgcc acgatcagca gatgccaagg
     1501 actgaactcg cccatcgtcg tctccccggt cagcgtcgca ctgcgaccct tcacttagtc
     1561 gctcaacata ctcgtccctg gccgccaagg ttcgtccacg ccggattgcc tgccggttcg
     1621 acccctcccg gatgcgggcc gcccggggga tactttggcg gatcaagccc gtcgagcgaa
     1681 gggggaggcg atcatggcgc aagcgtccgt gcgcagcacg gcatccggat ctgagccggg
     1741 gttcagacgc gacgtcggtt tgatggcgct gatgttcgtc tcattgggtt cgatcattgg
     1801 atcgggctgg ctgctgggcg cgttgacggc ggccacgtcg gctggtgggg cgtcgatcgt
     1861 gtcctgggtg cttgccggtg tgatcatcgt gctgttggcc ctggtgcact ccgagctcgg
     1921 tgcggcctat ccgctcgcgg gcggcaccgg gcgctggcca cgcttggcct tcggctcact
     1981 gggtggtttc actgcgggtt gggtggcctg gctgcaggcc gtcaccctcg ccccgatcga
     2041 agtcgaggcc gcgctgagct acctcgacca caaatggcat ggattgatca acgatgtagg
     2101 tgcgctgacg tccaccggct tagctgtgtc cactggcttg atgctggtct tcacggtgat
     2161 caacatcttg ggcgtgcggt ggctggcgga aagcaaccgg gtcacagtgc tgtggaaggt
     2221 cgcggtaccg gtggtcacgg tcgtcgttct gatcgtggtg tcgtttcaga tctccaattt
     2281 cactgctggc ggcggctttg ctccctacgg ggctcacggg gtgtttgcgg ccctgccgct
     2341 cggtgttgtg ttcgcgctgc agggctttga gcaagccgct caaatagccg gcgaggcacg
     2401 cgatccacaa cgcaacgtgc cccgcgctgt gatcggctcc gtgatcatcg gcgtcctgct
     2461 gtatctagcg ctagaaatcg ctttcatcgg ggcgctgaac ccgggcagtc tcgtacaggg
     2521 gtgggccaac ccggtcggca agggcgattt cggaccttat gccacgctgg ccaccggact
     2581 gggcctgggc tggttggcag cgatcctgta tgtcgatgcg ttcatctcac cggctggcac
     2641 cggcttgatc tatgtgggga cctccgcgcg gttgtcctac gctctcggtc actccggcta
     2701 cgttcccgag ggcgtgagcc ggatcagcag ccgaggagtc ccgtatacct cgatcatcct
     2761 ggcattcgtc gtcggtctga tctgctttct gcccttcccg agctggcaga gcctagtcgg
     2821 gctggtcacc tcggcaacag tgatcatgta cgggttcgcg ccgatcacct tgctggccct
     2881 gcgcaaggcg gatcccgacc gcagccgtcc gtaccggctg cccgccgcac cgatcctggc
     2941 gccgctggca ttcgtcgcgg cgaacgagat catctactgg acgtcctggg ccacggtcga
     3001 gaagctgatg ctggccatca tcgccggtta cgtgctgttc ggaatcacct atgcgaccgg
     3061 tcgtccgatg gagcgaccgc cgctggaccc ggagtcgctg gcctggatca ttccgtggtt
     3121 cgccggcctg tcagtgatct cttacctcgg ccagtacggc gggaccaagt tcatccccga
     3181 atggatcgat ctgggtgtag tggccgcgtt cagcctcgtg atctgctacg tggccgttgc
     3241 ccgtagcctg tccagccacc gggtcgccgc ggccatcgcg gccgacgagc acgaggcagc
     3301 ggtccaaccc gagctcaaga ctgcctgatg acatggcgtt ttccgttctg aggggtggat
     3361 gcacgtgcgc aacgtagggg tggaggaaga actcctgctg gtcgacccgg atagtggcca
     3421 accgctgtcg ctatcgacag cggtgttgcg tgccgctccg gaggccagtg acgaggcact
     3481 cacctcggag ctgacgcgcc agcagataga aacgaatacc cgaccgtgcg cctcgctgga
     3541 ggagctcgcg tctgaggtgc gccgatggcg ccgcgcggcg ggcgacgccg ccgagctccg
     3601 gggtgccagg gtcgccgcac tggccacttc gccgttgccg gtggacccat cgatcagttc
     3661 ttcgcctcgt tatgcccgga tggtcgatga gttcggcctc atcgcggagg agcaactcac
     3721 gtgtggctgc cacatgcatg tccagatcga gtcggagtcg gagggcgtgg cagtgctgga
     3781 ccgcatccgc ggatggctgc cctgcctgct agcgctcagc gccaactcgc ctttctggca
     3841 ggggcaggac agcggctacg ccagcttccg ctcgcaggtc tggggtcgct ggccctcggc
     3901 tgggccgacc gggctcttcg gctctgttga gacctatcac gccacgaccg aggccatgct
     3961 cgagacggag acggtgctcg acctgggaat ggtgtacttc gacgcgcggc tgtcccggca
     4021 acatccgacc gtggaggtac gcgtcgccga cgtctgcctg ctcgccgacg atgtggtgct
     4081 gctggcggcg ctggcccggg cgctggtcga aacagcggca cggtcatggc gggccggcgt
     4141 gcccccagcg ccggtccgga ccgaagtgct gcggctcgcc cgctggcgag ccgcccgatc
     4201 aggcctcgac ggttctctta tcgctcccgc cagcaggccg gcgccggcct cgcaggtgat
     4261 ccgcaccctt atcgaacacg tccgaccggt gctcgaggac tacggtgagc tcgacgtggt
     4321 cgaagagctg gtcagcacgg tgctcgagcg gggcaacggc acgacagctc aacgccagat
     4381 tcatcgcggg agtggtcagc tgaccgacat cgtcgcccac gccgtgaagg ccaccgcctt
     4441 gtgagggcgt gccgcctgtt ccgttgctcg cgccaaaccc gctcccgata ggggcgtggc
     4501 aagctggagt gcgcttacgg cagctgcgcg aaaacgggat gggaactgag ttggtacggc
     4561 gatgcacagc cctcgtgacc aacgatgatg gcatcgactc accaggcctg gctgcgttgg
     4621 ccgccgcagc gctgcgagtc gatctccacg tggtcgtggc cgcaccggcc cggcagtcaa
     4681 gcggggccag cgcaggactc atggcgacca gccaggcgag ccgcacggtg atcgagcgac
     4741 ggcagttgcc cggtctgcct ggtatcgagg cgtacgcgct ggaggcccag ccgggttaca
     4801 tcgtgcgtgc ggcgctacgc ggttggttgg acccggtccc tgagctggtg ctctccggca
     4861 tcaatcatgg cgcgaacgtc ggacgcgcca tcctgcattc cggcacggta ggtgcggcgc
     4921 tgaccgcagg ggtgaacgga gtacgcgggt tggcgatatc cctcgacgtc ggcctgcacc
     4981 tggcgcagcc accgcactgg gacaccgccg ggtacctgct gccgggcatc ttggcgatgc
     5041 tgaccggtgc acccgctggc actgtgctca cgctcaacgt tccagatcgg ccggtcgagg
     5101 cgctgaacga gttgcgccac gccacgctcg cgcggttcgg cgccgttcag agccgggtag
     5161 agcgggtgga ggacgggcag ctgcacctcg ccctggtcga tgcggatacc cagccggagg
     5221 ccggcagcga tagcgcgctg ctcgccgcgg ggcaccccac ggtgaccgca ctcgagtcgg
     5281 tgagcgaggc atccaaaccg gtcttgccgg agtggctggc atccgccggg caacccatcg
     5341 ctggagcagc caagtgagcg actaccccaa gtcgatcgtc ccaagcaacc atgttgagcc
     5401 ggttccacgc cgcctccgcg gatcactggg cggtgagacg gtcttcgaca ccacccgcgc
     5461 ctggtatgtg tgggaatggc cgcactaccc gcagtactac atccctatcg ctgacgtccg
     5521 ccgtgatctg ctggttcggg agggagctcc cccgagcagt cgcggtccgg ttgaggtgta
     5581 tggcttgcag gtcaaggacg tgcatcggct gcatgcggcg aggctgctga ccgactcgtc
     5641 ggtggacggc ctgtccggca ccgtgcgctt cgagtgggcg gccctcgatg cctggttcga
     5701 ggaggacgag cgggttttcg tccacccgcg caacccctac gcacgggtcg acgccctgcg
     5761 ctcgacgcgc tcagtgcgca tcgagctcga cggggtcgcg ctggccgagt cgtcctcgcc
     5821 ggtcatggtc ttcgagacgg gcttgccgac ccgctattac ctgaatcgga ccgaagtgaa
     5881 cctcgcccat ctggtcccca gcggcaccgt cactgagtgc ccctacaagg gaaccactag
     5941 cgcctgctgg tcagtgcgag tcggcgagac ggtgtatccg gacctcgcct ggtgctatga
     6001 cttccccacc cgggcgttgc tccccatcgc gggcctggtc gcgttttaca acgagaaggt
     6061 cgacaccgtc ctcgacggtc ggctgctgac ccgacccagc acacccttct cctgactatc
     6121 ggaaaaattc tttctccgag gtgtcgatcc agccgccccc cgctcgacgc gtagacgagg
     6181 ccggcttgca gccggcgcaa ccgatcactg cagggagacc cgacaatgcg attcatggtg
     6241 ctggtcaagg cgaacgagga ctccgaggcg ggcgtgctgc cgagcaagga ggacttggca
     6301 acgatgggcc gatacaacga agaactggtc aaggccggtg tgatgctcgc cggcgagggc
     6361 ctgcaggcca gctcgaaagg cgcccgggtc aggttcgacg gtgacaagcg catcgtgacc
     6421 gacggcccgt ttaccgagac gaaagagctg atcgccggct tctggctgat ccaggcgacg
     6481 tcgaaagagg aggcgatcga gtgggtctcg cgggcgccct ttgacggcgg caccgagctt
     6541 gagatccgcc aagtcttcga agcctcggac ttcgggcagg ggtgatgcca ccgcattcag
     6601 cggacgcagc ggggttaacg gcctaggtat ccctgctgcg cccgctgaat gcgtcttgct
     6661 ggcgtgcagg ggtgatgttc tgatggggct gtgacggcat gttcggctac ccatcgtgcg
     6721 atcgacgcgg tctggcggat tgagtcggcg agggtcatcg ccggccttgc ccgcatcgtc
     6781 ggcgacatcg gtctcgccga ggagctcgcg caggacgctc tggtcgccgc gctggagcag
     6841 tggccggagt caggcgttcc gcgtaaccct ggcgcctggc tgactgccat cgcgaagcac
     6901 cgcgcgattg atcacttccg tcgccgggag cggctggaac gcaagatcaa tgagctgggt
     6961 cacgagctgg agaccgggga agccgggact gtgccggact tcgacgcggc tgtcgatgac
     7021 gacatcggcg atgacctgtt acgtctggtg ttcacggcct gtcatcccgt gctgcccacc
     7081 gaggcgcggg tggcgctgac gctgcgtcta ctcggcggcc tgaagacgga cgagatcgcg
     7141 cgcgccttcc tggtctcgga gtcgaccgtc gcccagcgaa tcgtgcgggc taagcgaacc
     7201 ctcgcgcagg cccgggtgcc cttcgaggtg ccccagggcg ccgagcgcgc aacg
//
LOCUS       DASVXZ010000591        12918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_244917, whole genome shotgun sequence.
ACCESSION   DASVXZ010000591 DASVXZ010000000
VERSION     DASVXZ010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12918
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244917"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..158)
                     /locus_tag="VF788_12400"
     CDS             complement(<1..158)
                     /locus_tag="VF788_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003071389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX8934966.1"
                     /translation="MTALAAGLLPASELEKIRADFPILSRTVSDGRPLIYLDSGATSQ
                     RPRQVLDA"
     gene            complement(155..940)
                     /gene="sufC"
                     /locus_tag="VF788_12405"
     CDS             complement(155..940)
                     /gene="sufC"
                     /locus_tag="VF788_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEX8934967.1"
                     /translation="MTTLEIKDLHVVVPTDDEQNPEKEILRGVDLTVRAGETHAMMGP
                     NGSGKSTLAYSIAGHPKYRVTSGQVLLDGINVLSMSVDERARAGLFLAMQYPIEVPGV
                     SMSNFLRTAATAIRGEAPKLRTWVKEVKGAMSELDIDPAFAERSVNEGFSGGEKKRHE
                     ILQLSLLKPKIAVLDETDSGLDVDALRVVSEGVNRYRASGDVGVLLITHYTRILRHIT
                     PDYVHVFAGGRIVESGGQELAEELESGGYERFTRRPEATGVPL"
     gene            complement(962..1285)
                     /locus_tag="VF788_12410"
     CDS             complement(962..1285)
                     /locus_tag="VF788_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HEX8934968.1"
                     /translation="MTAVRVCSLTDLKDDQPAGFTVGGVPVVLVRQGEQVYALADICS
                     HAEIALSEGEVTRKGLECWLHGSCFDLRTGAPSSPPASEPVDTYAVTIDGDDVYVDPT
                     SPTNR"
     gene            complement(1282..2490)
                     /gene="sufD"
                     /locus_tag="VF788_12415"
     CDS             complement(1282..2490)
                     /gene="sufD"
                     /locus_tag="VF788_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010310686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEX8934969.1"
                     /translation="MTATTGRPAEHGLVEHSHGETNTAQHSPMVSRGQRFTSYDVDAF
                     EVPTGREEEWRFTPLRRLRGLHQGVAATGTAQLNVQAVGRITVEDVGRSDPRLGEGGV
                     PADRIAAQAWCVVEKATVVSVPAQQRIDDPVMITITGPGADQVAYGHLQVRLEPFAEA
                     VVVLDYQGSGTYAENVELVLADGARLTLVSVQDWADDAVHLGAQHARLGRDAVLRATT
                     VSLGGDLVRQSPTVTFTQPGGDAELLGLYFADAGQHLEHRLLVDHAVPHCRSNVAYKG
                     ALQGSPGQPDAHTVWIGDVLIQAAAEGTQTFEVNRNLVLTDGARADSVPNLEIETGEI
                     VGAGHASTTGRFDDDQLFYLTSRGIPVDQARRLVVRGFFGEILQKITITQVRERLAKA
                     IEAELEAVGV"
     gene            complement(2492..3934)
                     /gene="sufB"
                     /locus_tag="VF788_12420"
     CDS             complement(2492..3934)
                     /gene="sufB"
                     /locus_tag="VF788_12420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003920235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEX8934970.1"
                     /translation="MTTAPEQDVRTPLSQEETLSSLGRYEYGWADSDLAGAAAQRGLS
                     EAVVRDISAKKNEPEWMLETRLKALRLFHRKPMPHWGADLSGIDFDNIKYFVRSTEKQ
                     ATSWDDLPDDIKSTYDRLGIPEAEKARLVAGVAAQYESEVVYHKIREDLEELGVLFLD
                     TDTALRERPEIFQEYFASVIPAGDNKFAALNTAVWSGGSFIYVPPGVHVDIPLQAYFR
                     INTENMGQFERTLIIVDEGAYVHYVEGCTAPIYKSDSLHSAVVEIIVKKGGRCRYTTI
                     QNWSNNVYNLVTKRATAAEGATMEWIDGNLGSKVTMKYPSVWLIGEHAKGEVLSVACA
                     GEGQHQDAGAKMVHAAPHTSSTIVSKSVARGGGRTSYRGLVQVNEGSHHSRSTVKCDA
                     LLVDQISRSDTYPYVDIREDDVSMGHEATVSKISDDQLFYLMSRGLTEDEAMAMIVRG
                     FIEPIARELPMEYALELNRLIELQMEGAVG"
     gene            complement(3931..4674)
                     /locus_tag="VF788_12425"
     CDS             complement(3931..4674)
                     /locus_tag="VF788_12425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEX8934971.1"
                     /translation="MDVVKNVGADRRTRESVARMLLEHGPVTAAQVADSLGLSPAAVR
                     RHLDALLADGQASYRSAPRRGPRGRGRPAKVFLLTAVGRARFEHTYDDLAVAALRFLS
                     ERDGEHAVRSFAEQRVTDLVGRHRAAVVAATDPVARAQLLAVALSVEGYAASAEHVGA
                     GAQLCQHHCPVAHVAAEFPQLCEAETAAFADLLGVHVQRLATIARGDVVCTTHVPETR
                     VPHGAQTTVPTATPTTDLAPLNRMEASDA"
     gene            4862..5965
                     /locus_tag="VF788_12430"
     CDS             4862..5965
                     /locus_tag="VF788_12430"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEX8934972.1"
                     /translation="MYRVLFSVFFRHVPAETAHRLGFGLIRAVSAVPGLGTLLRYWLV
                     PRDPVLRVRTLGLDLPGPLGLAAGFDKDALGADALGALGFAFVEVGTVTARPQPGNPM
                     PRLFRLTPDRGLVNRMGFNNAGAALAADRLRARDRLQGRGRGIVVGVNIGKTKVVPDD
                     EAVVDYAASARLLAEVADYLVVNVSSPNTSGLRSLQAVERLRPLLVGVREALDSASSR
                     RVPLLVKIAPDLADEDIDAVADLALDLGLDGIIATNTTISRNGLTTDTAQVKAIGLGG
                     VSGAPLKKRSLAVLHRLRARVGDRLVLVSVGGIETADDAWARIEAGATLVQAYTGFVY
                     GGPLWPRRIHHGLGRRTRLAGYTSISQATGSNP"
     gene            6048..7025
                     /locus_tag="VF788_12435"
     CDS             6048..7025
                     /locus_tag="VF788_12435"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8934973.1"
                     /translation="MRALVTGGAGFIGSHVVDRLSADGHRVAVLDNLSTGRRDRIPRD
                     VALHVVDVVNAAAVTEAVTAYQPDVIYHLAAQISVRYSVADPVADATTNTLGTLNLLD
                     AATAANARLILASTGGAMYGDGVPLPTPETCLPATRAPYGISKYCAEQYLTLFNRLHA
                     GCHVALRLANVYGPRQDPHGEAGVIAIFCGQVARGETPTIYGDGKQTRDYIYVADVVD
                     AFVAATGYTGGKAVFNIGTGSPTAVIELLDIINSAAGTAIEPNHAPARAGESRHVALD
                     CARAAAELNWVSRTSAEAGIRHTYQQLTRNSLPASLGYSSRRGDRESSG"
     gene            7003..8610
                     /gene="mptB"
                     /locus_tag="VF788_12440"
     CDS             7003..8610
                     /gene="mptB"
                     /locus_tag="VF788_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol phosphomannose-dependent alpha 1,6
                     mannosyltransferase MptB"
                     /protein_id="HEX8934974.1"
                     /translation="MTGKVQGDGAPQPEPEGLVSARSGHPAPGAGLNLAETRQLDTVR
                     RFGTVGALLMGLGSLGAGTAPVLGNPVVGRPVLGLFNRMPTASLAVAYAGIAMVVLAW
                     LWLGGLASPGRVRLISRAQLDRAVLMWALPLLVAPPMFSRDVYSYLAQSAMVNRGLDP
                     YVLGPADALGIDHPLVRGIPTIWRNTPAPYGPLFLTWGRPIDWIAGDDVVLGVLLHRT
                     LAVAGLVMIVWALPRLAERMGVSPVFALWLGAANPLVLFHLVSGVHNEALMIGLMLVG
                     LDLVLRDPAIGPTMLGGSALIAAAAQVKIPAALSLGFVVMWCARHRGGRLRDVGWATA
                     AIGGTAVVTTVAIGLGTGLGFGWTGALGTPNVVRSWMSVVTELGLLAGRIGSLLGLGD
                     HTTSVLSLVRLTGLAGAGGLCLWLLWRCWQGRLEPLAGIGIGLGAVVLLGPVVHPWYL
                     LWAVIPLAASTTQPVFRITATLACAVLGLVVAPTGSDFLFRAWVLPSAIAAAAVTLVV
                     PMLVVRGRTPPLSGVLRASASRSARAT"
     gene            8622..9557
                     /locus_tag="VF788_12445"
     CDS             8622..9557
                     /locus_tag="VF788_12445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8934975.1"
                     /translation="MTPPASSAAVEVRGLTRSFGPVRAVDGLDLRVQPATVLALLGPN
                     GAGKTTTVEVCEGFLRPDAGTVRVLGLDPIADSTALRPRVGVMAQGGGAYPGVRAVEM
                     ITLVAACAAQPLDVGWLLDVLGLTGVARVPYKRLSGGQQQRLALACALVGRPEVVFLD
                     EPTAGMDPQARRLVWEIIGRLRADGVSVLFTTHLMEEAEALADQVVIIDHGRVVAEGS
                     PAELTSTGTERQLRFRARSGLDLDPLDTALPEECRVSEPTPGGYLVEGLIDPQVMATV
                     TAWCAQQGVFAEDLRVCRRILEDVFLELTGRELRS"
     gene            9614..10327
                     /locus_tag="VF788_12450"
     CDS             9614..10327
                     /locus_tag="VF788_12450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020658172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8934976.1"
                     /translation="MLLTQARTEFVLTLRNGEQVLLTLLIPLGMLIGLTVLNVVPVPG
                     PRVDNVTPRILALAVMSTAFTGQAIALGFDRRYGVLKRLAATALPRWSLVAGRMSAVL
                     GVVLVQLTVLGAVALALGWHPSSAGLIPAALLILGGTAAFGALGVLLGGALRAEVVLA
                     VANMVWLLLVVAGGIVLSVHALPGPLSMIAATLPSGALAEGLHTALAQGTVPWGALGV
                     LLAWAAGAGLLATRTLRLS"
     gene            10903..11505
                     /locus_tag="VF788_12455"
     CDS             10903..11505
                     /locus_tag="VF788_12455"
                     /inference="COORDINATES: protein motif:HMM:NF012427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HEX8934977.1"
                     /translation="MGSLVAFPDHYVFVGPSIGARTAAPGFPWEWLDPHRAHVLVSLG
                     TVNTEAGERFFATAVEAVTPLANRLQAILVASCELVGAVPDHVLVREFVPLLDLIPHL
                     DTVVCHAGHNTVCEALAHAVPLVVAPIRDQQPVVAKQVVDSGAGARVHFGRVDVTQLR
                     HAITTVLDNPSYQAAARRVRSSFAAAGGAAAAADHLEKLA"
     gene            complement(11509..11721)
                     /locus_tag="VF788_12460"
     CDS             complement(11509..11721)
                     /locus_tag="VF788_12460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004144 - diacylglycerol O-acyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WS/DGAT domain-containing protein"
                     /protein_id="HEX8934978.1"
                     /translation="MFQCSEVGYLAPPSTGIGVNFVFWDYAGSLRFGILSFAESIEAP
                     NELAMRLSSSLEELVAAADLRRVPTS"
     gene            12579..>12918
                     /locus_tag="VF788_12465"
     CDS             12579..>12918
                     /locus_tag="VF788_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934979.1"
                     /translation="MCDKCQVLLALLATGIAPIRIYGAYQTLLKRATASALMPAAEAS
                     SATVAPVSPEKIRPPFTIRVVPTAPSPRSSLAVLSRITAITAVITQAGIAVTGSVVRV
                     TGSGLGCPTWP"
BASE COUNT         2095 a         4231 c         4215 g         2377 t
ORIGIN      
        1 tcggcgtcga gcacttgccg gggccgctgc gaggtagctc cggaatccag atatatcagg
       61 ggccgcccat cgctcactgt gcgagacagg atcgggaaat cggcacggat cttctccagc
      121 tcactggccg ggagcagccc agcagccagc gcagtcacaa cggcaccccc gtcgcctccg
      181 gccggcgggt gaaccgctcg taaccgccgg actccaattc ctcggcgagt tcctgcccac
      241 cagattccac gatccggccg cctgcgaaga cgtggacgta atcgggagtg atgtgccgca
      301 ggatccgggt gtagtgagtg atcagcagca cgccgacatc cccgctggcc cggtaccggt
      361 tcacgccctc ggagaccacc cgcaacgcgt cgacgtccag gccggaatcc gtctcgtcca
      421 gcaccgcgat cttgggcttg agcagtgaca gctgcaggat ctcgtggcgc ttcttctcgc
      481 ccccggagaa accttcattc acgctgcgct cggcgaaggc agggtcgatg tccagctcgg
      541 acatcgcccc cttgacctcc ttgacccagg tgcgcagttt gggcgcctcg ccacggatcg
      601 cggtggccgc ggtgcgcagg aagttcgaca tcgacacccc tggcacctcg atggggtatt
      661 gcatcgcgag aaagagaccc gctcgggcgc gctcgtcgac cgacatcgac agcacgttga
      721 tcccgtcgag gagcacctgc ccggaagtga cccggtactt cgggtgcccg gcgatcgagt
      781 aagccagggt ggacttgccc gacccgttgg gtcccatcat cgcgtgcgtc tcccccgccc
      841 gcacggtcag atcaacaccg cgcaggatct ccttctcggg gttctgctcg tcgtcggtcg
      901 gtaccacaac gtgcaggtcc ttgatttcca gggtggtcat cggtgggttc tcgcactcct
      961 gctatcggtt ggtcgggctg gttgggtcga cgtagacgtc gtcaccgtcg atcgtcacgg
     1021 cataggtgtc caccggttca gacgccggtg gcgatgaagg agccccggtg cgcaggtcga
     1081 agcatgagcc gtgcagccag cactccagac ccttccgggt tacctcacct tcagacagcg
     1141 cgatctcggc gtgtgagcag atgtcggcca gggcgtagac ctgctcgccc tggcggacca
     1201 acacgaccgg cacgccgccg accgtgaagc cagcgggctg gtcgtccttg agatcggtca
     1261 ggctgcacac ccggactgcg gtcatacccc caccgcctcc agctcagcct cgatcgcctt
     1321 ggccagccgc tcgcggacct gcgtaatagt gatcttctgc aggatctcgc cgaagaaacc
     1381 tcgcacgacc agccgccggg cctggtcgac agggatgccc cgggaggtca ggtagaacag
     1441 ttggtcgtcg tcgaagcggc cggtggtgct ggcgtgccca gcgccgacga tctcgccggt
     1501 ctcgatctcc aggttgggca ccgagtccgc ccgggcaccg tcggtgagca ccagattgcg
     1561 gttgacctcg aacgtctggg taccctcggc agccgcctgg atgagcacgt ccccgatcca
     1621 cacggtgtgt gcatctggtt gtccgggact gccctgcagc gcgcctttgt aggcgacgtt
     1681 ggagcggcag tgcggcacgg cgtggtcgac cagcaagcgg tgctccagat gctgcccggc
     1741 gtcggcgaag tacagcccta gcaactcggc atcgccgccg ggctgggtga acgtgaccgt
     1801 cggagactgc cggaccaggt caccgcccag gcttaccgtg gtggctcgca ggaccgcatc
     1861 acggcccagc cgggcgtgct gcgcgccgag gtgcaccgcg tcgtcagccc agtcctgaac
     1921 gctcaccagg gtcaaccggg caccgtcggc aaggaccagc tcgacattct ccgcgtaggt
     1981 gccgctgccc tggtagtcga gcaccaccac ggcttcggcg aacggctcaa gacgcacctg
     2041 aaggtgaccg tatgcgacct gatccgcgcc cgggccggta atcgtgatca tcaccgggtc
     2101 atcgattcgt tgctgcgccg gcacgctgac cacggtggcc ttctccacca cgcaccaggc
     2161 ctgcgccgca atccgatcgg cgggaacgcc accttcaccc agccgggggt cggaccggcc
     2221 cacgtcctcg acggtgatcc ggccgacggc ctgcacgttg agctgcgcgg tgccggtggc
     2281 ggcgacacct tgatgcaggc cacgtaaccg tcgcagcggg gtgaaccgcc actcctcttc
     2341 gcgccccgtg ggcacctcga aggcatccac gtcataggag gtgaaccgct gcccccgcga
     2401 gaccatggga ctgtgttgtg cagtattggt ctcgccgtgc gagtgctcga ccagaccatg
     2461 ttcggctggc cggcctgtag tagccgtcat atcagccgac ggctccttcc atctgcagct
     2521 cgatcaggcg attgagttcc agggcgtact ccatgggcag ctcgcgagcg atcggctcga
     2581 tgaacccccg cacgatcatg gccatcgcct cgtcctcggt gagcccccgg ctcatcaggt
     2641 agaagagctg gtcatcgctg atcttggaga cggtggcctc gtggcccatc gacacgtcgt
     2701 cctcgcggat atcgacgtag gggtaggtgt ccgagcggct gatctggtcg accagcagag
     2761 cgtcgcactt cactgtggaa cgggagtgat ggctgccctc gttaacctgc accaacccgc
     2821 ggtaagaggt acggccgccg ccacgagcca ccgacttgga cacgatcgtg ctcgacgtgt
     2881 ggggggcggc gtgcaccatc ttcgccccgg cgtcctgatg ctgaccctcg ccggcgcagg
     2941 cgaccgagag cacctcaccc ttggcatgct caccgatcag ccagactgag gggtacttca
     3001 tggtcacctt ggagccgagg ttgccgtcga tccactccat ggtcgcgccc tcggccgcgg
     3061 tggcccgctt ggtgaccagg ttgtagacgt tgttcgacca gttctggatg gtcgtgtatc
     3121 ggcagcgccc gcccttcttg acgatgatct ccacgaccgc ggagtgcagc gagtcggact
     3181 tgtagatcgg cgccgtgcag ccctcgacgt agtgcacgta cgcgccctcg tcgacgatga
     3241 tcagcgtccg ctcgaactga cccatgttct cggtgttgat ccggaagtag gcctgcagcg
     3301 ggatgtcgac gtgcacgccg ggcggcacat agatgaacga tccgcctgac cacactgcgg
     3361 tgttcaacgc ggcgaacttg ttatcaccgg ccgggatcac gctggcgaag tactcctgga
     3421 agatctccgg ccgctcgcgc agcgcggtgt cggtgtccag gaacagcacg cccagctctt
     3481 ccagatcctc gcgaatcttg tggtatacga cctcggactc gtactgcgcg gccacgccgg
     3541 ccaccagccg ggccttctcc gcctcgggga tgcccagccg gtcgtaggtg gacttgatgt
     3601 catcaggcag gtcgtcccag gaggtggcct gcttctcagt cgaccggacg aagtacttga
     3661 tgttgtcgaa gtcaatgccg gacaggtcgg caccccagtg cggcatgggt ttgcgatgga
     3721 acaagcgcaa cgccttcagc cgggtctcca gcatccattc cggctcgttc ttcttcgccg
     3781 agatgtcgcg taccacagcc tcggatagac cacgctgtgc cgctgcaccg gcgaggtcgg
     3841 aatcggccca gccgtattcg tagcgaccca ggctggagag cgtttcctcc tggcttagcg
     3901 gtgtacgcac atcctgctca ggggcagtcg tcatgcgtca gacgcctcca tccggttcag
     3961 tggtgccaaa tcagtggtgg gagtagcagt gggaacagtt gtctgggcac cgtgcggcac
     4021 ccgagtctca ggaacatgcg tcgtacacac cacgtcgccg cgggcgatcg tggccagtcg
     4081 ctgtacatgg accccgagca agtctgcgaa tgccgccgtc tcggcctcac acagctgcgg
     4141 aaattccgct gcaacgtgcg cgaccgggca atggtgctgg cataactgcg cacccgcacc
     4201 gacgtgctca gctgacgcag cgtaaccctc cacactcagc gcgacggcga gtagttgggc
     4261 acgcgctacc ggatcggtcg cggcgaccac tgcggcccgg tgccgaccaa ccaggtcagt
     4321 cacccgttgc tcggcgaacg accggaccgc atgctcaccg tcacgctcgg agaggaagcg
     4381 cagggcggct accgccaggt cgtcgtaggt gtgttcgaac cgcgcccggc cgacggcggt
     4441 gagcaggaaa accttggccg ggcgaccacg gccgcgggga cctcggcgcg gtgcggaacg
     4501 gtagctggcc tgcccgtcgg cgagcagcgc atccagatgg cggcgcacgg cggcagggct
     4561 cagccccagc gagtcggcga cctgcgcggc agtcactgga ccgtgctcca gcaacatccg
     4621 tgccaccgac tcgcgggtgc gacgatcagc cccgacgttt ttcacaacat ccatgttacg
     4681 taattccccg cccagtgcac aacacaagtc gcccggcggg gtttcttgat ccaggtaccg
     4741 gtctccggcg aaacgtgggt gtcgtggttc gctagtgcct agcccgtgga tcaccaagcg
     4801 agctggcact cagaaggccg ggagcagaca gcaagatcac cactgattgc gtgggtgggt
     4861 catgtacagg gtgttgttct ccgtcttctt ccggcatgtt ccggccgaga cagcgcatcg
     4921 cctggggttc gggctgatcc gcgctgtgag cgcggttccc ggactgggga ctttactgcg
     4981 ctactggctc gtaccccggg accccgtgct gcgggttcgc acgctcgggc tcgacctgcc
     5041 gggaccgctg ggcctggcgg cggggttcga caaggacgcg ctgggtgccg atgcgctggg
     5101 cgcgttgggg ttcgctttcg tggaggttgg caccgtgacg gcgcgaccgc agccgggcaa
     5161 cccgatgccg cggctgttcc gcctgacgcc cgatcgtggc ctggtcaacc ggatgggatt
     5221 caacaacgcc ggcgcggcgc tcgccgctga ccggttgcgc gctcgcgacc gacttcaggg
     5281 tcgtggtcgt ggaatcgtgg tcggggtcaa tatcggcaag acgaaggtcg ttcccgatga
     5341 cgaggcggtc gtcgactacg cggccagcgc gaggctgcta gccgaggtcg cggactacct
     5401 ggtggtcaat gtcagctcac cgaacacttc tgggctgcgc agtctccagg ccgtcgagcg
     5461 tctccggccg ctgctggtgg gcgtgcgtga agcgctggac agcgccagtt cgcggcgagt
     5521 gccgctgctc gtcaaaattg ctcctgatct ggctgatgag gacatcgacg cggtggccga
     5581 ccttgcgctg gatctcggac tggatggaat catcgcgacc aataccacga tctcccggaa
     5641 cggactgacg acagatacag cgcaggtcaa ggccattggg ctgggtggtg tctccggtgc
     5701 cccgctgaag aagcgttcac tcgccgtgtt gcaccggctg cgcgcgcggg taggagatcg
     5761 tctagtcctg gtgtcggtcg gtgggatcga gaccgccgac gacgcctggg cccgcatcga
     5821 ggctggtgcg accctcgtgc aggcctacac cggattcgtc tacggcggac cgctgtggcc
     5881 acgtcgcatt caccacggtc tgggccgccg cacccggctg gccggctaca cctccatcag
     5941 ccaagccacc ggctcgaacc cctgaggtca acgaggacgg ctaggcgcgg ggacggctgc
     6001 cgctgcgtcg cgcgggccga atcagcgcac agctagggtg ctcgtgcatg cgagcacttg
     6061 tcacaggtgg tgctgggttc atcggctcgc atgtcgttga ccggctcagc gccgacggcc
     6121 accgtgttgc cgtgctggac aacttgtcga ccggccgacg cgaccgcatc ccccgcgacg
     6181 tggcgttgca tgtcgttgat gtcgtcaacg ccgccgcagt cactgaggcc gtgaccgcct
     6241 atcaaccaga tgtgatctac cacctcgcgg cccagatcag tgtccgctat tcagtagccg
     6301 atccggtagc agacgcgacc accaataccc tgggaacgct caatctcctc gacgcggcca
     6361 ccgcggccaa cgctcggctg atcctggcca gcaccggtgg tgccatgtac ggcgacggtg
     6421 ttccgctgcc tacgccggag acctgcctgc cggcaacgcg ggctccgtac gggatctcga
     6481 aatattgcgc tgagcaatac ctcacgctgt tcaatcggct tcatgccggg tgccacgtcg
     6541 ctctccggct cgccaacgtc tacgggccca ggcaagaccc ccatggcgag gcaggggtga
     6601 ttgcaatctt ctgtggccag gtggctcgcg gcgagactcc caccatttac ggcgacggca
     6661 agcagacccg tgactacatc tatgtcgctg acgtcgtcga cgccttcgtc gcggcaaccg
     6721 gctacaccgg cggcaaggcc gtgttcaaca tcggcactgg cagcccaacc gccgtgatcg
     6781 aactccttga catcatcaac tccgcggctg gaacggcgat tgagccgaac cacgcaccag
     6841 cccgggcggg tgagtcgcgg cacgtcgcac tcgactgcgc cagagcggca gctgagctca
     6901 actgggtctc ccgtaccagc gctgaggccg gcatccggca tacctaccag cagctcaccc
     6961 ggaacagctt gccagcaagt ctcggttact cttcgcggcg tggtgaccgg gaaagttcag
     7021 ggtgacgggg caccgcagcc cgagccggaa ggcctggtca gtgctcgatc tggacaccct
     7081 gcccccggcg ctggcctgaa tctggccgaa acccgacagc ttgacaccgt gcgccggttc
     7141 ggtaccgtcg gtgcgttgct catggggctg ggttcactag gcgccgggac ggcgccggtg
     7201 ctgggcaacc cggtggtcgg ccggccggta ctgggcctgt tcaatcggat gcccaccgcg
     7261 tcgctggcgg tggcctatgc cggcatcgcc atggtggtcc tggcctggct atggcttgga
     7321 ggattagcct cccccggacg ggtgcggctg atctcacgcg cccagttgga tcgggcggtg
     7381 ctgatgtggg ctctcccgct gctggttgct ccaccgatgt tcagccggga cgtttacagc
     7441 tacctggcgc agagcgcgat ggtgaatcgc ggcttggatc cctacgtact cggtccggcc
     7501 gacgcgctgg gcatagacca cccgctggtg cggggaattc cgacgatctg gcgcaatacc
     7561 ccagcaccct atggcccgct gttcctcacg tggggcagac cgatcgactg gattgccggg
     7621 gacgacgtgg tgctgggcgt actgctgcat cgaaccctcg cggtggccgg cctagtgatg
     7681 atcgtctggg ctttgccacg gttggccgag cggatgggcg tctcaccggt cttcgcgctg
     7741 tggcttggtg cggccaatcc gctggtgttg ttccatctgg tcagcggggt gcacaacgag
     7801 gccctcatga tcggcctgat gctggtcggt ctggacctgg tgctgcgtga tcccgcgata
     7861 ggaccgacca tgctcggcgg tagcgcgctc atcgcggccg ccgcgcaggt gaagattccc
     7921 gctgcgttat ccctcggctt cgtcgtgatg tggtgtgccc ggcaccgggg agggcggcta
     7981 cgcgacgtgg ggtgggccac cgcggcgatc ggcgggaccg ccgtggtcac cacggtggcg
     8041 atcgggctgg gcactggcct cggtttcggc tggaccggcg cgctgggaac gcccaatgtg
     8101 gtgcgcagct ggatgtctgt ggtgaccgaa ctcggtctcc tggccggaag aatcggcagc
     8161 ctcctgggat tgggcgacca cacgacctca gtactttcgc tggtccggct caccggcctg
     8221 gctggcgctg gcgggttgtg cctgtggctg ctctggcgct gctggcaggg acgtctcgag
     8281 ccgctggctg ggatcggaat cgggctgggt gccgtggtcc tgctgggccc agtggtgcat
     8341 ccgtggtacc tgctgtgggc cgtgattccg ttggcagctt ccacaaccca accggtgttc
     8401 cgcatcaccg ccaccctggc ctgcgcggtc ctagggctgg tggtggcgcc cacgggttcg
     8461 gacttcctat tccgcgcctg ggtgttgcca tcagctatcg cggcggcagc cgtcaccctg
     8521 gtcgtgccga tgctggtggt tcgcgggcgc actcccccgc tgtccggagt gctgcgggcc
     8581 agtgcgtccc gatccgcccg cgcgacctag gctctgtgaa cgtgaccccg cccgcgtcat
     8641 cggctgctgt cgaggtccgt ggcctgaccc ggagcttcgg cccggtgcgc gctgtggacg
     8701 gcctcgacct gcgggtccag ccagccactg tgttggcctt gctgggtccc aacggtgcgg
     8761 gcaagaccac cacggtcgag gtctgcgagg ggttcctgcg cccggatgcc gggacggtac
     8821 gggtactggg tctggacccg atcgccgaca gcaccgcgct gcgcccccga gtcggtgtga
     8881 tggcgcaggg cggcggggct tacccgggcg tgcgagccgt cgaaatgatc acgctcgtcg
     8941 cggcgtgcgc ggcgcagccg ctggacgtcg gatggctgct ggacgtgctc gggctcaccg
     9001 gcgttgcgcg ggtgccctac aagcggctgt ccggcggtca gcagcaacgg cttgcgctgg
     9061 cctgtgcgct ggtcgggcga ccggaggtgg tcttcctcga cgagccgacc gcgggcatgg
     9121 acccgcaggc tcgccgactg gtctgggaga tcatcggtcg gctgcgcgcc gacggcgtca
     9181 gcgtgctgtt caccacgcac ctgatggagg aggccgaggc gctggctgac caggtggtga
     9241 tcatcgacca cggccgggtg gtggccgagg gcagccctgc tgagctgacc tcgaccggta
     9301 ccgagcgaca actgcgcttc cgagcccggt ctggcctgga tctcgacccg ctggacactg
     9361 ctctgcctga ggagtgccgg gtcagtgagc caactcctgg tgggtacctg gtcgagggct
     9421 tgatcgaccc gcaggtgatg gccacagtga cggcgtggtg tgcccagcag ggcgtgttcg
     9481 cggaggatct gcgggtgtgc cggcgcatcc tggaggacgt gtttctcgag ctcaccggtc
     9541 gggagctgcg atcgtgacca gcttctcccc cggtaccttc gcccccgcac cggggcgggg
     9601 ccgcctgtgg cggatgctgc tcacccaggc gcgcacggag ttcgttctca ccctgcgcaa
     9661 tggggagcag gtgctgctca ccctgctcat cccgttgggg atgctgatcg ggctcaccgt
     9721 gctcaacgtg gtaccggtgc ccggcccgcg ggtggataac gtcactccgc ggattctggc
     9781 gctggccgtg atgtccactg ccttcaccgg ccaagccatc gcgctgggtt ttgaccgccg
     9841 ctacggggta ctcaaacgat tggctgccac ggcgttgccg cgctggtcat tggtcgccgg
     9901 ccggatgtca gcggtactgg gtgtggtgct ggtacagctg acggtgctcg gggcggtcgc
     9961 tctcgcgctg ggctggcatc cgtcgtcagc cggtctcatc ccggctgcgc tgctgatcct
    10021 gggcggcacc gctgcgttcg gcgcactcgg cgtgctgctg ggtggggcgc tgcgggctga
    10081 ggtggtactc gcggtagcga acatggtgtg gctcctactc gtggtggcgg gcggcatcgt
    10141 gctgtccgtg catgccttgc ccggccctct atcgatgatc gccgccacgc tgccctccgg
    10201 cgcgctggct gaggggctgc acaccgcgct cgcccagggc accgtcccgt ggggggcgtt
    10261 gggggtgctg ctggcgtggg cagcgggcgc cggtctgctc gccacccgca cgctacgact
    10321 gtcctgaact ccggctgcgc gctttcaggg tgcggcaacg tcctttcaga actctgttat
    10381 ccgttccaaa acagtcggcg gttttattac tactggctcc cactcgttgc cggagagtca
    10441 accaccgaac agcacggccc cggtactgcc cgttccgatc gttgccagaa gttgttattg
    10501 acatcggcgt caacggtcgc atagcatcca aatcgcggta agcaaagcca agcaggatgt
    10561 cgtcaggtgt ggcgtcgctg acttaagatg cctttctccg gccctttcgc ccctgccact
    10621 gcttgcaacg atgcgaccgc atccaaccaa ttcggtgaac ttcgatgctt cgcggttact
    10681 cctcattttg catgcccgaa gcaaggagaa cgccgctgtc gagtgtgtat gtcataccga
    10741 ccgaaaagaa aaggaatatg cggcatgact tccagctcgc cgaaacatgt gaactgttac
    10801 ggcaggctcg accgtccaat cgagtaagga cggagccgag gatatgcggt tgacttacgg
    10861 ttttctgacc agcttgtgct cgtattcacc accgaagcgc tggtgggatc tctcgtggcc
    10921 tttcccgacc actacgtatt cgtggggccc tcgatcggcg cacgcaccgc cgcgccgggc
    10981 ttcccgtggg aatggctgga tccccaccgg gcgcacgtgt tggtctccct cggcacggtc
    11041 aacaccgagg caggcgagcg attcttcgcc accgctgtgg aggcggtaac accgctggcc
    11101 aaccggttgc aggcgatcct ggtcgcgtcc tgcgagctgg tcggcgcggt acccgaccat
    11161 gtcctggtgc gcgagttcgt ccccctgctg gacctgatcc cgcacctcga cacggtggtc
    11221 tgccacgcgg gtcacaacac agtgtgcgaa gccctcgccc acgccgtgcc gctcgtagtg
    11281 gcccccatcc gcgaccagca gccggtagtt gccaaacagg ttgtcgactc cggcgccggc
    11341 gcccgggtgc atttcggtcg ggttgacgtc acccagctgc gccacgcgat cacgacagta
    11401 ctcgacaacc cgtcctacca ggccgcagcg cggcgcgtgc ggagctcctt cgccgccgca
    11461 ggtggtgccg ccgcagcagc ggaccacctg gagaaactgg catgaacgtc agctcgtcgg
    11521 gacccggcgc aaatcggcgg ccgctaccag ttcttctagt gagctggaca aacgcatggc
    11581 cagctcgttc ggggcctcga ttgactccgc gaacgacaag atcccgaaac ggaggctgcc
    11641 agcgtaatcc cagaacacga agttcacccc gatcccggta ctgggcggcg ccagataccc
    11701 gacttcactg cactgaaaca ccccccatgc gtttactcta cctcccatga gcgtaatcag
    11761 ttccgcaaga tcatggcagt tgactgaatc cagttcaggc cgtgaagaga aaccccaccg
    11821 tagcgagtag caacgacctc ccctactgcg ataaacggct ccgacacaat tttcgcacgg
    11881 agaggtcgct gccaatcaat actcgaccta tcagatgaag ccgccgagaa tggcaaaaat
    11941 cccgccgaga gtgtcagtga caagggatcc aacactaccg atgagaccgc ccagaataga
    12001 catgattcct cctttcgaat tctctgttaa tcccacctcg aacttgaggc agtcgtacac
    12061 tgccactcac ctcgccgctt ccttgatgca gactctccgt ctagctccga gtctcgggca
    12121 gtggagtaac gggtagtgaa tcgtggtcga tgtattggcc gtgatcgcag cgtggcaagc
    12181 cgccaggagg cgagtggggt cggagaaagg tcaccgatgt ggcgaccaca cctactcgac
    12241 gttcccttat acgtatggtc tgcatcatcg ctcaccgccg cacgattcta agcaggtatt
    12301 gatccccatg tcaaataaag actgtctggc aacaagtaga agcagagagt attgggcttg
    12361 atttagcaca agactctccg gcaacaagtg ggagcccaga gtgccgatcc gatcccgaat
    12421 aaagctattc ctgtacgaaa cgtaaagaga aagtcaaaga aagtgtgatg ccggagtggg
    12481 cgcagccaaa ccgaagtgac aattcgattt ccatgaagta aacgtttggt acttacgcgg
    12541 ggcgtgccgt aaaggctaca gcttgcatac acaattcggt gtgcgacaag tgccaagttc
    12601 tccttgcact cctggccact ggcatcgccc ctattcggat atatggggcg tatcagacgc
    12661 tcctcaagcg ggcgaccgcg agcgcgctga tgccggccgc ggaggcatcg agcgctactg
    12721 tagcgccggt gtctccggag aagatccggc ctccatttac catcagagtt gtgcctaccg
    12781 caccgtctcc aagaagctcg ctggccgtcc tgtcccggat caccgcgatc accgctgtga
    12841 tcacccaggc gggtatcgcc gtgaccggct cggtggtgcg ggtcaccggt tcgggcctgg
    12901 gttgcccgac ctggccgc
//
LOCUS       DASVXZ010000592         2221 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_64746, whole genome shotgun sequence.
ACCESSION   DASVXZ010000592 DASVXZ010000000
VERSION     DASVXZ010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64746"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(281..538)
                     /locus_tag="VF788_12470"
     CDS             complement(281..538)
                     /locus_tag="VF788_12470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934980.1"
                     /translation="MLEYKLFLVCPKPSSAAYQRGAWARVGYRTWDEYCETELGGVHL
                     WLPREERPQVVDSLREAGRFTRTIASVTGQSLTNVHGVAIP"
     gene            773..988
                     /locus_tag="VF788_12475"
     CDS             773..988
                     /locus_tag="VF788_12475"
                     /inference="COORDINATES: protein motif:HMM:NF024852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX8934981.1"
                     /translation="MASLDNMFATSLRAKGTTDADLASRASLDWAILRPGRLTNEPTG
                     TGLGRLAKHIGRREVPRDDVAAGSWRS"
     gene            complement(2040..>2221)
                     /locus_tag="VF788_12480"
     CDS             complement(2040..>2221)
                     /locus_tag="VF788_12480"
                     /inference="COORDINATES: protein motif:HMM:NF024752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8934982.1"
                     /translation="QAEFNTTLSKIRAAVEHAIAHLKTWRMLSEEGGRYRAPIEKYQS
                     MLKAVIGLYFFAAYE"
BASE COUNT          397 a          724 c          711 g          389 t
ORIGIN      
        1 tccctccatg cgcctgaaag atcagtgtga tctcctccta ggacgcctcg cacctccagt
       61 cacaccacag ccgtgacaac aacccagatg gccccatcgc ctttgctacg ctgagtaatc
      121 agccgctact gcaccggctc aagcactccc cgtctccgtg ccaccgcccc cagctcgcag
      181 ccgcgcgacc ctcaatcatc accaccgtcg gcagcattcc accaggacct tgtcgcgcac
      241 agttgcatta aggcgaagag cgtcttcgcc atgcacccaa tcagggaatc gcgactccat
      301 ggacgttggt aagggactga ccggtgaccg aggcgatcgt cctggtgaac ctccccgctt
      361 cccgaaggct gtccacgacc tgtggccgtt cctcccgcgg caaccacagg tgcactccac
      421 cgagttcagt ttcgcagtac tcgtcccacg ttcggtaccc cacgcgggcc cacgcccctc
      481 gttggtaggc agcagaggac ggtttcgggc acacaaggaa caatttgtac tctagcatca
      541 gtcgctcggg cggaaccacc ccacgaggct cggatggtgc tgagctcgaa agcggcgatg
      601 atcccactga gcaagtcccg ccgagtagaa gtcattagag aatatcttgg cgttggtcat
      661 ggtcagatgg atgcagtcgt gcggtagacg ttgtcggggt ggaaggcatc accgggggta
      721 gaagaacact gagtagggca tcggtgcgtt gtggaacgcg gtgctgtggt agttggcgtc
      781 cttggacaac atgttcgcca cctccctgcg agccaagggc acgaccgatg ccgacctcgc
      841 ctcgcgcgcc agcctggatt gggcgatcct gcgaccgggg cggctgacga acgagccgac
      901 gggcaccggc ctgggccgac tcgccaagca tatcggccgt agggaggtgc cgcgtgatga
      961 cgtggcagcg ggctcctggc gctcctgaat acccctgcga gcgggatgac cctggagctg
     1021 gtggccggtg acacgcccgt ggaccgggcc gtccgagtgg tcacctcggt ctgaccgctc
     1081 ggcagcggcc cgctcaaggc gatagagccg acggtggttt cccacgggcc gctcggcgtg
     1141 ttgcggccga ccagaccgcc cgtgccctac tcttactcga acacaggttc gataacgaga
     1201 ggggcgggat gaaccccacc acacagacaa ccgcgcgacc cgcaggaggg atgccccagt
     1261 cgatcatgac ccgccagggg aaacagcagc accgcggcta cacccccgcg cgccgcgctc
     1321 tggcgcacca ccagcaggca ggacccacca cgcaggtcca gcgcatgccg cggaactgcc
     1381 gcacaccgct gggcatgcga ctgaccacag caacgctcca ccagctcgcc gtgaatagca
     1441 ccgtccggca tcccgtcgaa atacccagac catcggccgt gcaactggtg aggatgtcgt
     1501 gctgcgacac cggctggggc gaggttgatc acgcgcgctg ttctcatcgc accggcggat
     1561 gcggccacgt cttcgacgcg cagctgtggg acgcccaccg ccccgcgagg atgtgtgtgg
     1621 acccccgctc tctgtgctgg tgcacaccaa aaacgggatc taattgcggg cactggaccg
     1681 attgcgcgac caacctcgca ggcagagcgg gacaaaccga gaaaccccgg ctctgcgtcg
     1741 gggtcggggt gaggcgtagc ggtgaagtga gcggactcaa cggtgatcgt cagggtcgtg
     1801 ggagaccccg cctgcccggg ttgggggagg ctgcgcggct tctgtccgcc gcctatgggt
     1861 ggcggggctg gcgagtgctc aggagccccg cgctgggtgg ggattaccgg ctcttctgag
     1921 gagctgcctg cgacgacctc cccgccgatg ccgccctcgt gggggagctg gttcgcgatc
     1981 attgctcgtc gtcctcttcg ttttgtcgcg gcggggcgag cgaccccatg accggaagct
     2041 tattcatatg ctgcgaagaa gtagagtccg atgacggctt tgagcatgct ttggtacttt
     2101 tctatcggtg ctcgataccg gccgccttct tcgctgagca tgcgccaggt cttgaggtgt
     2161 gcgatggcgt gttcgacggc ggcgcggatt ttgctcaagg tggtgttgaa ttcggcttga
     2221 g
//
LOCUS       DASVXZ010000593         3648 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_512810, whole genome shotgun sequence.
ACCESSION   DASVXZ010000593 DASVXZ010000000
VERSION     DASVXZ010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3648
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512810"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(600..1328)
                     /locus_tag="VF788_12485"
     CDS             complement(600..1328)
                     /locus_tag="VF788_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934983.1"
                     /translation="MSVIARTGDDTSVHHFRGSSNGGAVRTFAILRDGSRAGLASTWA
                     FLQRSGAKKLCSTAVVDNLGMAQGRGVPQIDQALEAVVGAIDALTEPQDGGPGVVLTL
                     GGLVVSGTIIPAWQWFHEVEHSTRAAFVVHVGGSIDDEHGGWARLFKGAAESVANEHA
                     DRRAAREVIEGLPDRYRRLVAQHDQTVYIHLTEARVVAAGVSPLPAAGMHWRGRLSEI
                     AGWSFGHLGVEPPTAPAQDADHYM"
     gene            complement(1889..2314)
                     /locus_tag="VF788_12490"
     CDS             complement(1889..2314)
                     /locus_tag="VF788_12490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934984.1"
                     /translation="MRVATGGGRRIAAQERHLPGRWEAVAEAGGTALVGAMATNVWQI
                     TRSGVVGLFGRRGPAGQAVIEAQLDDHAALVSQAENADEVRQDLASTWRRNLEALLRQ
                     HPKAEDELRTLVVRVWETLPTPQQRWVQVNVGRNQRDRR"
     gene            2598..2849
                     /locus_tag="VF788_12495"
     CDS             2598..2849
                     /locus_tag="VF788_12495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8934985.1"
                     /translation="MTADEALVELLGDQRTGDIHADLIEAAKQAMLRRKHNTVLGGTV
                     IAALREAGMTYREIEQATGIPHTTAQRWALPPTTARECD"
BASE COUNT          646 a         1230 c         1138 g          634 t
ORIGIN      
        1 gtttaaacta ctcgccaaat cccggatccg gatcgtcacc gccagcccag aaccggtcca
       61 cggccagcca gagaaccgaa acactagcgc ataaagtccg caaagaatca cgccggaggc
      121 ctccgcggtc gcacttcatt acgtcgggca gggacagttc gtggccagcg ggtgacgtca
      181 ccgcgccagg ttctgacacg atgcggacat gacgagcttt gaatcttcgc aacggatctc
      241 aatggcgtgt gagaaatgcg gaggcgaacg ggatgtgcag ctgccccgcg aagacggcac
      301 cttcatgacg gccgcgaggt acatggcctt acacaaggtc gccggcacgg tgctgctctg
      361 cgagacgtgt acacccgtcg gatcacacgg acttggcgag tgacttcgtg gcagttctcg
      421 catacgtcga gggattcgac cggcagtcgc tgaccgacag cccgacgccc tgaccggcgc
      481 cggcccgcga cgaccgcgag gcctgaccgc gctgatcggc tatgcccgct gcggcagagt
      541 cggtgaggac gagttatccg cgcaaacaaa gccgctactt cacgacgtcg cgccgacgcc
      601 tacatgtagt ggtcggcgtc ttgcgccgga gcggttggcg gctcaacacc aagatggccg
      661 aacgaccacc cggcaatctc tgagagccgt cctcgccagt gcatcccggc agcaggcaac
      721 ggactgacgc cagcagccac tacccgggcc tcggtcaggt ggatgtagac ggtctgatca
      781 tgctgggcca caagacgccg gtagcggtcc ggcagaccct cgatcacctc tcgcgcagcc
      841 cgacggtcgg cgtgctcgtt cgccactgac tcggcagcac ccttgaacaa cctggcccaa
      901 ccaccatgct cgtcgtcgat cgacccccca acgtgcacga cgaacgccgc acgggtggag
      961 tgctcaacct catgaaacca ctgccaggcg gggatgatcg tcccgctgac gaccaggcca
     1021 cccagcgtaa gcacaacacc ggggccgccg tcctggggct cggtgagagc atcaatcgcc
     1081 ccgaccacag cttccagcgc ttggtcaatc tgcggcacac ccctgccctg ggccatgcca
     1141 agattgtcca ccaccgcggt agaacacagc ttcttggccc cacttcgctg caggaacgcc
     1201 caggtggatg ccaggccagc cctacttccg tcgcgcagaa tggcgaaggt tcgtacagca
     1261 cctccattgc tgctaccacg gaagtggtgg accgacgtat cgtcgcccgt tcgagcaatg
     1321 acgctcaccg acgacgcctt catgttttcc tacgcgtttc ttcccgatca ccgttggtgc
     1381 ccatgatggc ggtcgcgaca tcgaccgcac cacctgagcc gctacggcgg atggggggtg
     1441 gagcggtcta ccaaaggcgc cgttcaaggc ggggcacatc gccttgagag gacggtgcca
     1501 tggtcacctt tcccgtcctc atgacctgcg cgaacggtgc cttcgaaact ggggacgggg
     1561 ccgttgggca cgcattcggc acgctgccac ggctcggttg gtgcacggtg atgccaccgg
     1621 gcggttcgca tcctcgccga ccacgttggc cctgcttcgg ccatttctgg gctgcactgc
     1681 acaactacct cccactgcgc gcgtggtggg gtgcgtccat agcgctgcac gaggacgaaa
     1741 aggcgctcag gttgtcacgc tagtgcccat gggtacccat cggcacctga ccgccgccgt
     1801 acatcagaaa gaggactggt acgtcgcgca gtgccggctc cattctgtgg cttacgctat
     1861 cgcgcagcca cgccgtcccc gtcgttggtc agcgtctatc tcgttggttg cggccaacgt
     1921 tgacctgcac ccatctctgc tgtggggttg gcagggtctc ccacactcgc actaccaggg
     1981 tccggagctc gtcctcggcc ttcgggtgtt ggcgcagcag cgcctccaag ttccgccgcc
     2041 acgtcgaagc gagatcctgc cgaacctcgt cggcgttctc ggcctgcgag accagggcgg
     2101 catggtcgtc aagttgggcc tcgataacgg cctgcccggc tggccctcgg cgcccaaaca
     2161 acccgacgac cccagatcga gtgatctgcc acacattagt ggccatcgcc cccaccagtg
     2221 ccgtgccacc agcctcggcc accgcttccc atctccccgg caggtgcctc tcctgggctg
     2281 cgatacgacg acccccaccg gtcgctacgc gcatcctccg atcgtctata ctgcgagccc
     2341 cgtttcgttg atgggtggtt gggccagccc agcgggccga atcccgatgc gatcgtggtt
     2401 tcacccccac ctcccaggcg cctcacagga tgcgggcgct gttctctcga gatcacgcga
     2461 gccgtcgcag tttgcgggaa ggctgcgtcg gggagtgccg cccgcataaa tactcatcat
     2521 cgggatcctc gctgtcgtac gctgagtggt tggcgcgagt gtcccatttg tgggacagac
     2581 tggcgaagag ggggaccatg accgccgatg aggcgctcgt cgagctactc ggcgaccaac
     2641 gcactggtga catacacgcc gacctgatcg aggctgcaaa gcaggccatg ctgcgacgca
     2701 agcacaacac cgtccttggt ggcaccgtca tcgccgccct gcgtgaggca ggcatgacct
     2761 atcgggagat cgaacaagcc accgggatac cgcacaccac cgcgcagcgc tgggcgctcc
     2821 caccaacaac tgcccgcgag tgcgactgat tagcagcgaa cggccggggc cagccgtcac
     2881 tcgctgatcc ggccgctcac gcctccggca agcgcttgcc gccggtagcc agcccgatag
     2941 acgcggtacc gaaaacacca cggcgactcg acggcttttc gatcgacagc gtgagctcac
     3001 acgtcacaac ccaggagcga aagatcacgg tgcgacgagt cacctttgct cgacgtcaga
     3061 ggcgctggtc ggttggagtg ggctgggttt cgcgtggtgg tcggcaccga gtctcccgtg
     3121 cgcccgcctg tcccgcgcgt ggactggcgg cagaaaaggg gtgtgcaggt gctggttgtc
     3181 gtggggtaac ggcggccttc tgaccgaccg ctcgggcgag ctctcgaggt gctgcgttag
     3241 ggagtgcttt gctcgcgtgg cggccgttgg acctggttgc ccgctgtcct ggtcccgaac
     3301 caaccctgag cgaaatcagc tcccggtcct ggggaggggt tggatatggc tggcccagcg
     3361 ggtgggtcgt cgcgcaggtg gtgtttaccg ggccgagggt attcgcccgt ccgacacccc
     3421 gaccagttcg ccacgggatc ctcttgtggt ggtggtgagg aaccgttcac cgcagcgaca
     3481 gacatgtcat ctcggagacg gtgtctggcg ggaccctcac tcgagggcgg atcagcctcg
     3541 ctggcaggaa catcggcgtt gatgcgctcg ccccgcaact ggtcgtatgt cggtgtctgt
     3601 cccatggtgg gacaccgtag gggcgcccca acgcgccaag cgtccaca
//
LOCUS       DASVXZ010000594         2216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1108101, whole genome shotgun sequence.
ACCESSION   DASVXZ010000594 DASVXZ010000000
VERSION     DASVXZ010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1108101"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..139
                     /locus_tag="VF788_12500"
     CDS             <1..139
                     /locus_tag="VF788_12500"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX8934986.1"
                     /translation="GESAAAAVIREVAEEAGVTINVTRLAGVYSDPGHVLAYPHEHGT
                     Y"
     gene            complement(414..1148)
                     /locus_tag="VF788_12505"
     CDS             complement(414..1148)
                     /locus_tag="VF788_12505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HEX8934987.1"
                     /translation="MTRGDTANQPPHILVLWDIDHTLIEMRGLGQAIYERVFPAVTGK
                     PLRQLAEVAGRTELVIMHDTLQFHDIEPTEQTMRRLAAALVQGHEDARQEIATTGRAL
                     PGAKETLAVLAADPRVHQAVLSGNLRDVSRIKLEVFGLDQYLDLASSAYGDDHTERPE
                     LVTIAQQRATKQMGTRFDNQHTVLIGDTPKDVEAALTAGVRIIGVASGKSDESALMEA
                     GAPATVSDLADTPAVVRLVTDGSTTL"
     gene            1306..>2216
                     /locus_tag="VF788_12510"
     CDS             1306..>2216
                     /locus_tag="VF788_12510"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8934988.1"
                     /translation="MAGLTGITADYLYQIERGMKLPTITVLARLAEVLGVSVAELLGQ
                     ESTASGRTSQVPAGETLYRALTSPMPATSEPPSVAEVHARVTRAWWTWQTSPQRYSQL
                     AGQLPQLIIDMELAVQVHQAETATSFRYAKGCAVDLYSLVRTVSKRLGRFDLSLLAAD
                     RAVRAAEAADDPLRLGLARWNLAHVLLADGLSEDAELVAMRAADALRPLIAEGGAETA
                     AVYGALLLLGAAAVARQGNTWTVHSRLREAAPLADRTGECNTLWTAFGPTNVAMYSVT
                     VEIEAGEVLEGLRLAERIDHRCTPSIER"
BASE COUNT          429 a          675 c          698 g          414 t
ORIGIN      
        1 aggcgagtcg gccgcggcgg cggtgatccg cgaagtcgcc gaggaagccg gcgtcaccat
       61 caacgtgacc aggctcgccg gggtatacag cgatcccgga cacgtattgg cctacccaca
      121 cgagcacggg acttattaac aaatcgcgat gtgttcccac gccatcagcg gctaacgctg
      181 cccgagcgga tcggatcagc ggccttgatg tactcgtagc acaacgcatc tgccgtccag
      241 tcttcgaatc ccgtggcacc cggacgagac gacgacatat cagacgaatt agccacgacg
      301 acacctttcc aagccataga ggtcagcttg ccaagtctca tctcgggttc tcgcgcgtcc
      361 accactcgac gccggggact gtttcaaacg ctgtgggata aatcgttgat cggttagagc
      421 gtagttgacc catcagtcac cagccgtaca accgccggag tatctgcgag gtcggagacg
      481 gtagctggcg ctccagcctc catcaacgcg ctttcatcgc ttttgccgct agcaaccccg
      541 atgattcgca caccagccgt gagtgctgcc tcgacatcct taggtgtgtc cccgataagt
      601 acggtgtgtt gattgtcaaa cctggtgccc atttgttttg tagcgcgttg ctgggcgatg
      661 gtgaccagct cgggccgctc ggtgtggtcg tcaccatagg cgcttgaggc aagatcgagg
      721 tattggtcga gaccgaagac ttctagcttg atacgggaga cgtcgcgcag attgccgctg
      781 agaacggctt ggtggacgcg gggatcggct gccagaaccg ccagcgtctc cttggcgccc
      841 ggcaaggcac ggccggtggt ggcaatctcc tggcgcgcgt cctcgtgacc ctggacgagg
      901 gcagcagcca aacgacgcat cgtctgctcg gtcggctcaa tatcatggaa ctggagggtg
      961 tcgtgcatta tcaccagctc ggtacgaccg gcgacttcgg cgagctgtcg gagcggctta
     1021 ccagtgacag cagggaacac tcgctcgtag atggcctgtc caaggccacg catctcgatc
     1081 agggtgtggt cgatgtccca cagcaccagg atgtgtggcg gttggtttgc ggtatcccct
     1141 cgggtcatac accgcagtct gccaagggag tgactatcaa ggcgtagcat ccccgttgat
     1201 cacgcctcag acgacgggta aacggcattg gacgagcaac tggcccgggc catcggcgag
     1261 cgtgtgcgag cccaccgaac aaccggacga cggaagcaga cggtggtggc cgggctgacc
     1321 ggtatcacgg ctgactacct ctaccagatt gagcgtggga tgaagctgcc aaccatcacc
     1381 gtgctagcga gacttgccga agtgctcgga gtgtcggtgg ctgagttgct cggccaggaa
     1441 tcaaccgcaa gcggtcggac gtcgcaggta ccagccgggg agaccctcta ccgcgcgcta
     1501 accagtccga tgccggccac ttctgagccg ccgtcagtgg cggaggtaca cgcgcgggta
     1561 acgcgggcct ggtggacctg gcaaacgtca ccgcagcgct acagccagct cgccggtcaa
     1621 ctgccgcagc tcatcattga tatggagtta gcggtgcagg tgcatcaagc tgagactgcc
     1681 acaagcttcc ggtacgccaa gggctgcgcc gtcgatctct acagcctggt gcggaccgta
     1741 tcaaagcgac tcggccggtt tgatctatcg ctgctcgcag ctgaccgggc tgttcgcgcg
     1801 gctgaggctg ccgatgatcc attacggcta ggtctcgcgc ggtggaacct ggcccacgtc
     1861 ttgctagccg atggcctgtc cgaagacgcc gagctggtgg cgatgcgggc ggcagacgcc
     1921 cttcgtcccc tcatcgccga gggcggtgcc gagacagcgg cggtctacgg tgcattgctt
     1981 ctgctgggag cggctgcggt tgctcgccaa ggaaacacct ggactgtcca cagccggtta
     2041 cgggaagctg caccgctggc tgatcgaact ggcgagtgca acaccttatg gaccgccttt
     2101 ggcccaacca acgtcgccat gtactccgta accgttgaga tcgaggcggg tgaagtcttg
     2161 gagggcctcc gactggccga acgaatcgac caccgatgca ccccatccat agagcg
//
LOCUS       DASVXZ010000595         3712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1589135, whole genome shotgun sequence.
ACCESSION   DASVXZ010000595 DASVXZ010000000
VERSION     DASVXZ010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3712
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1589135"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..816
                     /locus_tag="VF788_12515"
     CDS             <1..816
                     /locus_tag="VF788_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEX8934989.1"
                     /translation="RVVVDCANGAASGIAPAVYRKAGADLVALHAQPDGLNINDGCGC
                     THLDGLRKAVLEQSAALGIAHDGDADRCLAVDATGEVVDGDQIMAILAVAMQASGQLV
                     DNTLVATVMSNLGLHLAMREHGVLVRTTPVGDRYVLEALAAGGFSLGGEQSGHVVLPE
                     YASTGDGLITALRLMSRIVASGGSLAELAGVVTRLPQVLINVAVADKTKVAMAPTVAG
                     AIACAEAELGETGRVLLRPSGTEQLVRVMVEAPTESLATTIAQRIATIVVAAS"
     gene            complement(1049..1825)
                     /locus_tag="VF788_12520"
     CDS             complement(1049..1825)
                     /locus_tag="VF788_12520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8934990.1"
                     /translation="MARTDPAVRRTAEELSRPGPHAVASGDLAAAGMPGVVFTPRSGL
                     GLPAVAFGHGWLQPTSRYDELLRHLASWGLVAAAPATQRKALASHSQFATDLRAALDL
                     CAGVRLGDGAISVDPSRLGLAGHGMGGGCAVLAAAVDDRCRAVVTLALAETMPSAVTA
                     ARGCTMPGLHLAGGKDLLAPAIGHAEPVTRAWAGPVQLRTLPNAGHLGYTSGQHWTDL
                     LIGSGPEFGTRRISRALITAFLLSHLTGTSDYDALLAEPH"
     gene            1879..>3712
                     /gene="glmS"
                     /locus_tag="VF788_12525"
     CDS             1879..>3712
                     /gene="glmS"
                     /locus_tag="VF788_12525"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEX8934991.1"
                     /translation="MCGIVGYVGQRGALDVVLQGLGRLEYRGYDSAGVAVLTSAGALA
                     VTRKAGPLANLIGELDAAGRGRLSGTAGMGHTRWATHGAPTDRNAHPHSDTAGRLAVV
                     HNGIIENHAQLRAELERAGVEMASDTDTETAAHLIAAAYDDCGDLPLAVRLVCRRLHG
                     SFTLVITHADEPNRIVAARRSSPLVVGVGDGEHFVASDVAAFIEHTREAVELGQDQVV
                     TITRDGYHIVDFHGAPAHGKPFRINWDLSAAEKGGHDYFMLKEIQEQPSAIANTLRGH
                     FVDGRIVLDEQRMDIQELRDVDKVFVVACGTAYHSGMVAKYAIEHWCRLPVEVELASE
                     FRYRDPVLDRSTLVVAISQSGETMDTLEAVRHAREQKARVLAICNTNGAQIPRESDAV
                     LYTHAGPEIGVAATKTFLAQIVANSLVGLALAQARGTKYSDEVAREYAELEAMPAAVT
                     QVLGIVDQVRELARQLVDAKVVLFLGRHVGFPVALEGALKLKELAYMHAEGFAAGELK
                     HGPIALLEKDLPVVVVMPSPKGRAVLHPKLLSNIQEIRSRGARTIVIAEEGDETVRPY
                     ASHLLEIPAVPTLLQPLVSTVPLQVLAAEVARQRGYDIDKPRNLA"
BASE COUNT          637 a         1209 c         1267 g          599 t
ORIGIN      
        1 cgcgtggtgg tcgactgcgc gaacggcgcg gcatccggca tcgccccggc ggtctatcgc
       61 aaggctggtg ctgacctggt ggcgctgcac gcccagcccg acggcctgaa catcaacgac
      121 ggctgcgggt gtactcatct cgatgggctg cgcaaagccg tgctggagca gagcgcggct
      181 ctgggtatcg cgcacgatgg agatgccgac cgctgcctgg ccgtggacgc caccggtgag
      241 gtggtggatg gtgatcagat catggccatc ctcgctgtgg cgatgcaggc gagcgggcag
      301 ctcgtggaca acaccttggt cgccaccgtg atgagcaact tgggattgca cttggcgatg
      361 cgtgagcacg gcgtgctggt caggactacg ccggtggggg accgttacgt gctcgaggcc
      421 ctggcagccg gcggattctc gctcggcggg gagcagtccg ggcacgtggt gctccccgag
      481 tacgccagca ccggtgatgg cttgatcacc gcgttgcggc tgatgtcccg gatagtggcc
      541 tcgggaggaa gcctggcgga gctggccggc gtggtgaccc ggcttccgca ggtgctgatc
      601 aacgtggcgg tcgcggacaa aaccaaagtt gcgatggcgc ccacggttgc aggcgccatc
      661 gcctgtgcgg aggccgagct gggcgagacc ggccgcgtgc tgctacgccc ctcaggcacc
      721 gagcagctgg tgcgggtgat ggtcgaagcc ccgaccgaat cattggctac gacaatcgcc
      781 caacgcattg ccacgatcgt cgtcgccgcg agctgactcc ccgattactg cgttcttctg
      841 gataacttcc caggagaacg gaatgcgaat tctaccttgc tgacttgatg acaaaccata
      901 tcgccccgag tgcaaaaaca gcgatgacag cccagagtac gaccagcatg acataaccga
      961 taaccatggc gactcctttg ccaagcgccc ggcgcggcgc tgcgcttact ataaggcacc
     1021 ggtcgccctc gagcctcgtc taatcacact agtggggttc ggccagcagc gcgtcgtagt
     1081 cgcttgtgcc ggtgagatgg ctgagcaaga acgcggtgat cagcgcccgg ctgatccgcc
     1141 gggtgccgaa ctcggggccg ctgccgatga gcaggtcggt ccagtgctgg ccggaggtgt
     1201 agccgagatg gccggcgttg ggcagcgttc gcagctgtac ggggcccgcc catgctctgg
     1261 tcaccggctc ggcatgcccg atcgctggtg ccagaagatc cttacccccg gccaggtgca
     1321 ggcccggcat ggtgcaacca cgagcagcgg tcacagcaga gggcatcgtc tccgctaacg
     1381 ccagggtgac gaccgcgcgg caccgatcgt cgacggccgc cgcgagcact gcgcacccgc
     1441 cgcccatccc gtgcccggcc aggcccagcc ggctgggatc gacgctgatc gcaccgtcac
     1501 ccagccgcac gcccgcgcac aagtccagcg cggcgcgcag atcagtggcg aactgagagt
     1561 gcgaggcgag tgccttgcgt tgggtagcag gcgcggcggc gaccagcccc caactggcca
     1621 ggtgacggag caattcgtca taacgtgacg tcggttgcag ccagccgtga ccgaaagcca
     1681 ccgcgggtag cccgagcccg gaccggggcg tgaacaccac cccgggcatc ccggccgctg
     1741 cgagatcacc gctggccacc gcatgcggac ctggccggga gagctcctcg gcggtgcggc
     1801 ggacggcggg atcggtgcgt gccatgagcc gggacggtat cggatgatgg acctcgcgcc
     1861 tgcgctagcg tgagtcacat gtgtggaatc gtgggctacg tcggacaacg gggcgccctc
     1921 gacgtcgtcc tgcaaggtct gggccggctg gagtaccgcg gatacgattc tgccggagtc
     1981 gccgtgctga ccagcgccgg cgcgctcgcg gtgacgcgta aggcggggcc gctggccaac
     2041 ttgatcggtg agctcgatgc cgctgggcgt ggaaggttga gcggcaccgc aggaatgggg
     2101 cacacccgct gggccaccca cggtgcacca accgatcgca acgcccaccc ccactcggat
     2161 accgccggcc ggctcgccgt ggtgcacaac gggatcatcg agaaccacgc tcagctgcgc
     2221 gccgagttgg agcgggccgg tgtggagatg gccagcgaca ccgacaccga gaccgccgcg
     2281 cacctgatcg ccgcggcata tgacgactgc ggtgaccttc cgctggccgt gcgtctggtg
     2341 tgccggcggc tgcacggatc attcacgctc gtgatcaccc atgccgatga gcccaatcgt
     2401 attgtcgctg ctcgccgctc ctcgccgctg gtggtagggg taggtgatgg tgaacacttc
     2461 gtcgcctccg acgtcgcggc gttcatcgaa cacacccgcg aggccgtcga actcggccag
     2521 gatcaggtgg tgacgatcac ccgggacggc tatcacatcg tcgatttcca cggcgccccg
     2581 gcacacggaa agccctttcg tatcaattgg gatctctccg cggcagaaaa gggcggccac
     2641 gactatttca tgctcaaaga aatccaggaa cagcccagcg ctatcgctaa tacgcttcgc
     2701 gggcatttcg tcgacggccg gatcgtgctg gacgagcagc ggatggatat ccaggagctg
     2761 cgtgacgtcg acaaggtgtt cgtggtcgcc tgcggtaccg cgtaccactc aggcatggtc
     2821 gccaagtacg ccatcgagca ctggtgccgc ctgccggtgg aagtggaact ggcgagcgag
     2881 ttccggtatc gcgacccagt gctggaccgc tccaccctgg tggtggccat ctcgcagtcc
     2941 ggggagacga tggacaccct ggaggcggtc cggcatgccc gggagcagaa ggctcgcgtg
     3001 ctggcgatct gcaataccaa cggggcacag atcccgcggg agtccgacgc ggtgctctac
     3061 acccatgctg ggccggagat cggggtggcc gccaccaaga cgttcctggc tcagatcgtc
     3121 gccaactccc tggtcgggct ggcgctggcg caggcgcgcg gcactaagta ctccgacgag
     3181 gtcgcccgcg agtacgccga gctggaggcg atgccagcgg cggtgaccca ggtgctcggc
     3241 attgtggatc aggtccgtga gctggcccgc caactcgtcg acgccaaggt ggtgctgttc
     3301 ctgggccgcc atgtcggctt ccccgtggcc ctggaaggcg ctctgaagct caaagagctt
     3361 gcctacatgc atgccgaggg cttcgccgcc ggggagctca agcacggtcc catcgcgttg
     3421 ctcgagaagg acctaccggt ggttgtggtg atgccctcgc ccaagggacg ggctgtgctg
     3481 caccccaagc tgctgtccaa catccaggag atccgttctc ggggagcgcg aaccatcgtg
     3541 atcgccgaag aaggtgacga gacagtgcgg ccctacgcct cgcacctgct ggagatcccc
     3601 gcggtgccca ccctgttgca gccgctggtg tccaccgtgc cgctgcaggt acttgccgcc
     3661 gaggtcgcgc gccaacgcgg ctacgacatc gacaaacctc gcaaccttgc ca
//
LOCUS       DASVXZ010000596         8727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1018372, whole genome shotgun sequence.
ACCESSION   DASVXZ010000596 DASVXZ010000000
VERSION     DASVXZ010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8727
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1018372"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VF788_12530"
     CDS             complement(<1..436)
                     /locus_tag="VF788_12530"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005449561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX8934992.1"
                     /translation="MVPELTAGEDGDGFVRCGDGQTRWGRFGAAGLLLRAPDAERRPL
                     VLMQHRAPWTHHGDLWGMPGGARCSAETPVQTALREAAEEAAVDSCRVRVRGEVVVHP
                     GGDAWSFTSVVADVTEPLPVRPNIECTELAWIPEGEVTALNLH"
     gene            606..1907
                     /locus_tag="VF788_12535"
     CDS             606..1907
                     /locus_tag="VF788_12535"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8934993.1"
                     /translation="MGKLGRQLGLGMMMMGAKTSTATPGTAPQNRADMGTTWGGNNVE
                     VIAREDPGSDALHAWDVLVDRTPGTDVTQLSVWAGLRGRVGFTPLYLLAYQEGELVGG
                     AQILTRRFPVLGSVGYLPYGPLVAPEAPATDAIRRALVDALVVLSRRRLRILFIQPPE
                     GAQDTSDELLRRGFRPSSAGIAPQGSIRIDLTADLAEIRSRFGKRLKSWTNRWESRGV
                     TVRTGTVEDMPLLAELMAGSAQHQGYTPLPLDYMTALYRELDATGHVVMFVGEANGVP
                     VAADLMTGCGEMVRGRLSGFDRSGEAMRLSVPAAIRWELIKWAKAQGYRWFDFGGLRP
                     ETLAALLDSANASTGKGPSADTLPTADQPKVTFGGTAFRYPTAVEMVRPAVLRTVYDL
                     AWRSATGRRVFSEVKGLLRGSRWRGRDPVASPATSTGVSSS"
     gene            1977..3230
                     /locus_tag="VF788_12540"
     CDS             1977..3230
                     /locus_tag="VF788_12540"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8934994.1"
                     /translation="MKIVCVGGGPAGLYFAISAKLRNQNHDITVIERNPEGVTYGWGV
                     TFSNPLLDSLYRNDPVSARRILEEPASWGNQEVHVGPRQRAHLGGYGFAIGRKHLLDI
                     LVERASDLGVDIQFQREVKDLSEFADVDLIVACDGANSRVRRIYDQHFQTDLVMGRNK
                     YLWLGTHRIFESFMFAFEETEAGWIWFYSYPYNADTTTFIVECSPETWQGLGFDVLGP
                     DESIKRLEEIFAHHLDGHSLMNSMRDLGKIPWLNFTRITNTSWYCDNVALMGDAAHTT
                     HFSIGSGTTLAMQDAIGLAESLQAHDNLQVALKHYEEKRRAEIMDLQSAAVSSTEWFE
                     NVPSAINQPITEFAYSLWKRRGRHPRWRYHLHLATQISPLRRLRQALSATLNELRAQQ
                     RMKQADISPSTCSHAELPSGSLRVT"
     gene            3310..4578
                     /locus_tag="VF788_12545"
     CDS             3310..4578
                     /locus_tag="VF788_12545"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8934995.1"
                     /translation="MTENMRIVCVGGGPAGLYFAISAKLRRRGHDITVIERNPAGATF
                     GWGVGYWDDVLDSLYRNDPVSAREIERYSGVWDGVEVHVGADQKAYLGGYGLSMGRQR
                     LLDILAQRATKLGIEIRFQNEIEDLTSLADADLIVASDGINSRTRQLARNHYRTDVEI
                     GRNKYLWLGTYRVFDAFTYAFERTPAGWIWMHAYYLDAERSTCIIECPPQTWKGLGFD
                     ELGVDQSLQLLEQIFERHLHGQPLISQLRSDDRLPWLNFRVVRNDAWFHDNVVLVGDS
                     AHTTHFSIGSGTKLAINDAIALATKLEEHTDLQSALKAYEIERRAEVDLMQRNATQSM
                     QWLENVEDCIGQDSVHFAYELSKRFRGRQPSWRYHLHLATQIPALRRVRRHVTSARRW
                     RHARLRKRWANPSAYVVATAPRRLRPNLER"
     gene            complement(4605..5129)
                     /locus_tag="VF788_12550"
     CDS             complement(4605..5129)
                     /locus_tag="VF788_12550"
                     /inference="COORDINATES: protein motif:HMM:NF014132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HEX8934996.1"
                     /translation="MAKAPISSVDPRKLSIEEFVSLLEPANGAMDPQVFAKLIKHASA
                     EQLNAVLDDPQRRSALLGTIFARMADQFRPERAPNRDSAIHWRITGGVNGEDVYETWI
                     TGGQGSSRPQCSTSKELSHDPRITLTMSADQFLALVSGNGSPALMLMTGKVSLEGDIG
                     FAANLTNIFDIPHA"
     gene            5262..5831
                     /locus_tag="VF788_12555"
     CDS             5262..5831
                     /locus_tag="VF788_12555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8934997.1"
                     /translation="MRERQMLDAAVAVFSQRGFHLASMDEIAEAAGVSKPMIYAYLGT
                     KNDLFTACIRREAQRLVELITTAVPPGLATPERLYRGLLAFFAFVTEHRDGWIVLYRQ
                     ARVREPFAGEIAVARERIITVVAGLLARSSCDEAHARTSPIAHALVGAAEALSDWGLE
                     HPEETPDALTTRLIDIFWIGLKRSGGGSV"
     gene            5922..6968
                     /locus_tag="VF788_12560"
     CDS             5922..6968
                     /locus_tag="VF788_12560"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8934998.1"
                     /translation="MTTVAVLSFRLGVADGVSVAAAQWVEALRQMGCRVRTIAGVGTA
                     DRLVPGLALDSRYPAHSEDVTRALCGADLVVVENVCSLPMNPAVTEVVAGALRGRRAV
                     LRHHDLPWEREQYAHLRGWPPDDPSWQHVAISRHSATQLARRGIAATTVYHGYARVPR
                     HGDRSAGRAALGVAPRQRLLLQPTRAIPRKNIAVGLALAQALDAVYWLTGAAEDGYGP
                     QLGELLNGARCPVRRGLPGGLRMADAYAAADAVVLPSTWEGFGMPLIESALASRPLAV
                     SDYPVAQEVATLGFTWFPVDDPAPLAAWFADPDPALLARNRSLARHHFGPDALTKRLT
                     ETLARAGLSAPRPR"
     gene            6980..7498
                     /locus_tag="VF788_12565"
     CDS             6980..7498
                     /locus_tag="VF788_12565"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005453350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX8934999.1"
                     /translation="MSMLDELLIRVLRGPVQRLMAEERNRFTYGDSEDPLYRYQLHGG
                     LERLHIDPTAIVNNALFNVSGGEITIGEYAFFGHEVAVLTGTHDITKFGRERQTTFPR
                     SGRDVVIDEGAWVASHAMVLGPVRIGRHAVVAAGSLVLDDVPPYTVVAGRPAKVIKKI
                     NEIGHDVPADPR"
     gene            7495..8007
                     /locus_tag="VF788_12570"
     CDS             7495..8007
                     /locus_tag="VF788_12570"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8935000.1"
                     /translation="MKIEIGAGEKPHPDYDVHVDILPLPDIEVISWIDRLPFTTASVD
                     ALRANHVLEHQSYELVEPTLREWARVMRPGATLDIGVPDARFVAGQWVRGEIDTAEAN
                     YWILGGHSDRAAHQGVDAHGVPRWIWNAHHTMFDAESLRALVSHCGFTDLDIFTYDVR
                     NLRCYALRAP"
     gene            8066..>8727
                     /locus_tag="VF788_12575"
     CDS             8066..>8727
                     /locus_tag="VF788_12575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8935001.1"
                     /translation="MNHVDHVVSKWIGQHPPHPLDVAMTKLSSAANHSVLWFSVAAVL
                     AARKGATRRGALRGVLSIAATSLTANAVLKPLMPRRRPPARELPAYQSFPTPPKSSSF
                     PSGHAASAAAFAAAVALESPKPGLVIAPLAAAVAYSRVHIGVHWMSDVVVGAAVGSGI
                     ALGTRRWWPVRTTDEAQASRCDDAPVLPAGAGLVLVANQRSGDPDYDPVAEITEALPA
                     ATV"
BASE COUNT         1591 a         2856 c         2755 g         1525 t
ORIGIN      
        1 gatgcaggtt gagcgctgtg acctcacctt ccgggatcca ggcgagctcg gtgcactcga
       61 tgttgggacg caccggcagt ggctcggtga cgtcagcgac cacgctggtg aacgaccagg
      121 catcaccacc ggggtggact accacctcgc cgcggacacg cactcggcag gaatccacgg
      181 cggcttcctc agccgcctcg cgcaatgcag tctggaccgg tgtctccgca ctgcaccgag
      241 ctcctcccgg catcccccag agatccccgt ggtgcgtcca cggcgcgcgg tgctgcatca
      301 ataccagcgg ccggcgctcg gcatccggag cacgcagcag caaccctgcc gcgccgaatc
      361 gcccccaccg cgtctgcccg tcgccgcacc gcacgaaacc atcaccatct tcgcctgctg
      421 tcagctcggg aaccacccat ccacgctgcc acagctgcag gcacagacgt aacgaccgac
      481 cgcgcggcga cgacactatg actgagggta accaggggga cgtgcactcg gggtgggcgc
      541 cggagccgaa gcgacgcggc cagggatgct gcttcgctga tcacggatga cgggggtgaa
      601 tggctgtggg aaaactcggc aggcagctcg gactcggcat gatgatgatg ggagcgaaga
      661 ccagcaccgc gacaccaggt acggcaccac agaatcgagc cgacatgggg acgacctggg
      721 gcggcaacaa cgtggaggtg atcgcccggg aggatcccgg ctccgacgcg ctacatgcat
      781 gggatgtgct ggtcgatcgc acaccaggca ctgacgttac tcagctctcg gtgtgggcgg
      841 ggttgcgcgg ccgggtcggc ttcaccccgc tttacctgct ggcctaccag gagggcgagc
      901 tggtcggtgg ggcgcagatc ttgacgcgcc ggtttcccgt tctcggctca gtgggctacc
      961 tcccttacgg ccctcttgtg gcacccgagg ccccggctac cgacgccatc cgccgagcgc
     1021 tcgttgacgc cctcgtggtg ctgagccggc ggcggctgcg aatactgttc atccaaccgc
     1081 ccgaaggcgc ccaggacacc agtgacgagc tgctccgccg cggatttcgg ccatcgtcgg
     1141 ccgggatcgc cccgcaaggc tcgatccgca tcgacttgac ggccgatctg gcggagatcc
     1201 gcagcaggtt cggcaaacga ctcaagtcgt ggaccaaccg ctgggagtcg cgtggtgtca
     1261 cggtccggac cggaacggtc gaggacatgc cgctgcttgc cgagctgatg gccggctcgg
     1321 cgcaacacca gggctacaca cctctgccgc tggactacat gacggcgctg taccgggaac
     1381 tggatgccac aggccacgtc gtgatgttcg ttggcgaggc gaacggtgtg ccggttgctg
     1441 cggatctgat gaccggatgt ggagagatgg tccgcggccg gttatccggg ttcgatcgct
     1501 cgggcgaggc aatgcggctc agcgtgccag cagcgatccg gtgggagctg atcaagtggg
     1561 ccaaggcgca agggtaccgc tggttcgatt tcgggggcct gcgtccggag acgctggccg
     1621 cattgctgga cagcgccaat gccagcaccg gcaaagggcc cagcgccgac accttgccca
     1681 ccgccgacca gcccaaggtc acctttggcg gtaccgcgtt ccgctacccc actgcggtcg
     1741 agatggtcag acctgcagtg ctacggaccg tctacgacct cgcgtggcgc tccgccaccg
     1801 gccgccgggt gttcagcgag gtgaaaggcc tgctgcgggg atcgcgatgg cgtggtcgtg
     1861 atccagtggc ctcgcccgcc accagcaccg gggtatcctc cagctaagcc gcaggtcgtc
     1921 gcagaaccaa tgccaggacc attaactcac cgtcgatcag ggaggcggaa gacggtatga
     1981 agatcgtgtg cgtcggcggc gggcctgcgg gtctgtactt cgccatctcc gcgaagttgc
     2041 gaaaccagaa tcacgacatc acagtgatcg aacgcaatcc ggaaggggtg acctacgggt
     2101 ggggggtcac cttctccaac ccattgctgg acagcctcta ccgtaacgac cccgtcagcg
     2161 cacggcgaat tctggaggag cccgcctcct ggggtaacca ggaagtacac gtcgggcccc
     2221 gccagcgtgc tcacctcggc ggatacggat tcgccatcgg ccgcaagcat cttcttgata
     2281 tcctggtcga gcgagcaagc gatctcggtg tcgatatcca gttccaacgc gaggtcaagg
     2341 acctgtccga gttcgcggac gtcgatttga tcgtcgcctg cgacggcgcg aacagccgtg
     2401 tgcgccggat ctatgaccag cactttcaga ccgatttggt gatgggccgg aacaagtatc
     2461 tctggcttgg aacccatcgg attttcgagt ccttcatgtt cgcgttcgaa gagacagagg
     2521 ccggctggat ctggttctat tcgtatccct acaacgcgga tacaaccacc ttcatcgtgg
     2581 agtgctcacc ggagacctgg cagggactcg gcttcgacgt gctgggaccc gacgagagca
     2641 tcaagaggct agaagaaatc ttcgcgcacc atctcgacgg tcattccctc atgaactcga
     2701 tgcgtgacct cggcaagatt ccttggctca acttcacccg catcaccaac acctcatggt
     2761 attgcgacaa tgtcgcgctg atgggtgacg cggcgcacac cacacatttc tccatcgggt
     2821 ccggtaccac gcttgcgatg caggatgcaa tcggactggc cgaaagcctg caagcccacg
     2881 ataacctaca ggttgccctt aaacattacg aagagaagcg gcgcgccgag atcatggatc
     2941 tacagagcgc cgcagtgagc agcaccgaat ggttcgagaa tgtgccgagc gccatcaatc
     3001 agccgatcac cgagttcgcc tattcgctgt ggaagcgtcg cggtcgtcac ccacggtggc
     3061 gttaccacct ccatctggcc acccagattt caccactacg ccggctacgg caagctctca
     3121 gcgccacgct caacgagctc cgcgcccagc aacggatgaa gcaggccgat atctccccct
     3181 cgacatgctc gcacgccgag ttgccatccg gatccctgcg cgtgacctga gcagggtacc
     3241 ggattccgac atattccccg cggccgaagg ttgctagacg ccaacgagga gttgagacgg
     3301 gagaggcgag tgacagagaa catgcgtatt gtgtgtgtcg gcggtggacc ggcaggcctg
     3361 tacttcgcca tctcggcaaa gttgcgcagg agaggtcacg acatcacggt gatcgaacgc
     3421 aacccagccg gggctacctt cgggtggggt gtcggctatt gggatgacgt tctggacagt
     3481 ctttaccgta atgatcctgt gagtgcccgg gagatagaga ggtattcggg ggtctgggac
     3541 ggagtggagg tgcatgtcgg ggccgaccag aaggcttacc tcggcggata tgggctgagc
     3601 atgggccgcc aacgcctcct tgacatcctc gcgcagcgcg ccacgaaact tggcatcgag
     3661 attcgatttc aaaacgagat agaagacctg accagcctcg ccgacgccga tctgatcgtc
     3721 gcttccgatg gtatcaacag ccggacgcgc cagcttgccc ggaaccacta ccggacggac
     3781 gtcgagatag gtcgtaacaa gtatctgtgg cttggcacat atagagtgtt cgatgctttc
     3841 acctacgcat ttgagcggac acctgccggc tggatatgga tgcatgcata ctatcttgac
     3901 gctgaaagaa gcacctgcat catcgagtgc ccaccacaga cctggaaagg actgggcttc
     3961 gacgaactcg gggtagatca gagcctgcag ttgctggaac agatcttcga acggcaccta
     4021 catggtcagc cattgatcag ccagctacgc agcgacgaca ggttgccgtg gctcaacttc
     4081 agggtcgtca gaaacgatgc atggttccat gacaacgtcg tgctcgtagg tgattccgca
     4141 cacaccacgc acttctcgat tggttcagga acaaagctcg cgattaatga tgcgatcgca
     4201 ctcgcgacga agttggagga gcatacggac cttcagtctg cgctcaaagc ctacgagatc
     4261 gagcggcgcg ctgaggtgga cttgatgcaa cgcaacgcaa cgcagagcat gcagtggctc
     4321 gaaaatgtgg aagactgcat aggccaggac agcgtgcact tcgcctacga actgtcgaaa
     4381 cgttttcgcg gtcggcaacc atcgtggcgc tatcaccttc acctggccac gcagattccg
     4441 gcactacgta gggtacgccg ccacgtgaca tcagcccgac gatggcgaca tgcccgcctg
     4501 cggaagcgtt gggctaaccc gagcgcgtac gtggtcgcaa ccgcaccacg ccgattacga
     4561 cctaacctcg agagatagct ggctcgaccc aaaaaacagc agactcaggc atgcgggatg
     4621 tcgaagatgt tagtcaggtt ggcggcgaag ccgatgtcac cctccaatga caccttcccc
     4681 gtcatgagca tcaacgcggg cgagccgttc ccggagacca gtgcgagaaa ctgatcagcg
     4741 gacatcgtca gagtgatacg aggatcatgc gagagttcct tgctggtgga acactgtggc
     4801 ctcgaggaac cctgaccgcc ggtaatccag gtctcgtaca catcctcgcc gttgaccccg
     4861 ccagtgatcc gccagtgaat cgcagaatcc cgattcggtg cacgctccgg gcggaactgg
     4921 tccgccatcc gggcgaagat tgtcccgagc agtgcgctgc gccgctgcgg atcgtccagc
     4981 accgcgttga gctgctcggc cgaagcgtgc ttgatcagct tggcgaagac ctgaggatcc
     5041 atcgcgccgt tcgccggctc gagtaggctc acgaactcct caatggacag tttcctcgga
     5101 tccacgctgc tgataggggc cttcgccata accactcccc gatttctact cgtcagtaac
     5161 attacgggct gctaggtaga ctcgcaaccg tgagcccgtc cctcgccgag ccttcaccgc
     5221 caaaaccatc gtcaccgtcc cgccagcggg tgccacgaca ggtgcgagag cgccagatgc
     5281 tcgacgccgc cgtcgcagtg ttttcccagc gtggcttcca tcttgcctcg atggacgaga
     5341 tcgccgaggc tgccggggtg tccaagccga tgatctacgc ctacctcggc accaagaacg
     5401 acctgtttac cgcgtgtatc cgccgggaag cgcagcgcct ggtggagctg atcaccacag
     5461 cggtgccgcc ggggctggcc acgccggaac gcctctaccg cggactgctg gcgttcttcg
     5521 cattcgtcac cgagcatcgc gacggctgga tcgtgctcta ccgccaagcc agggtccgcg
     5581 aaccgttcgc cggagagatt gccgtggcgc gcgagcggat catcacggtg gtagccggac
     5641 tgctggcgcg ttcatcctgc gatgaggcgc acgcgcggac ctcgcctatc gcgcatgcac
     5701 tggtcggggc cgccgaagca ctatccgact gggggctcga gcatcccgag gaaacccccg
     5761 acgccctcac cacccgtctt atcgacatct tctggatcgg cctgaagcgc tccggtggcg
     5821 gatccgtcta aggacgcctt ttcgtgctgg tgcttgcggt attgctgggg atcgtgagtg
     5881 tttagcggtg tcctgggtca tgccactgct aaacactcac gatgaccaca gtggccgtct
     5941 tgtcgttccg gctcggggtg gccgacgggg tgtcggtcgc ggctgcgcag tgggtggagg
     6001 cgctgcggca gatggggtgc cgggtgcgca ccatcgcggg ggtgggcaca gcggatcgtc
     6061 tggtgcccgg gctcgcgctt gactcccgct acccggcgca ctcggaggac gtgacgaggg
     6121 cgctttgcgg cgccgacctc gtggtggtgg agaacgtgtg ctccctgccg atgaacccgg
     6181 ccgtgaccga ggtggtcgct ggggcgctgc gcgggcgccg cgcggtgctg cgccaccacg
     6241 acctgccttg ggagcgggag caatacgcac acctgcgggg ctggccgccc gatgatccca
     6301 gctggcagca cgtcgcgatc agccggcaca gtgccacgca gttggcccgg cggggtatcg
     6361 ccgccaccac cgtttaccac ggttatgccc gggtcccccg tcacggcgac cgaagcgccg
     6421 gtcgggccgc gctgggcgtc gcaccgcgcc agcggctgct cctccagccc acccgcgcga
     6481 tcccgcgcaa gaacattgct gtcgggctcg cgcttgcgca ggccttagac gccgtctact
     6541 ggctgaccgg ggccgccgag gacggttacg gcccgcagct cggcgagttg ctcaacgggg
     6601 cacgctgccc ggtacgccgc ggcctacccg gcggacttcg catggctgac gcgtatgccg
     6661 ccgcagacgc ggtggtgctg ccgtccacct gggaaggctt cggcatgcca ttgatcgagt
     6721 ccgccctggc cagccgcccg ctggcggtga gcgactaccc ggtggcgcag gaggtggcca
     6781 cgctgggctt cacctggttt cccgtcgatg acccagctcc gctcgccgcc tggttcgccg
     6841 atcccgaccc ggcgttgctg gcccgcaacc gttcgctggc ccggcaccac ttcggtccgg
     6901 acgccctgac caaacggctg accgaaaccc tggcccgcgc tgggttatcc gctccacgtc
     6961 ctcgctaaag tctccgatca tgtcgatgct ggacgaactg ctgatccggg tgttgcgtgg
     7021 cccggtacaa cgcctgatgg ctgaggaacg aaaccgtttc acctacggtg acagcgagga
     7081 tccgctctac cgctaccaac tgcacggcgg gctggaacgg ctgcatatcg acccgaccgc
     7141 gatcgtcaac aacgcgttgt tcaacgtttc cggtggggag atcaccatcg gcgagtacgc
     7201 cttcttcgga cacgaggtcg cagtgctcac cggcacccac gacatcacca aattcggccg
     7261 cgaacggcag accactttcc cgcgatccgg acgggacgtg gtgatcgacg aaggtgcctg
     7321 ggtggccagc cacgcgatgg tgctcgggcc ggtgcgcatc ggccggcacg cggtcgtcgc
     7381 cgccggctcg ctggtgctcg acgacgtccc gccctacaca gtggtcgcag gccgccccgc
     7441 aaaagtgatc aaaaagatca acgagatcgg tcacgatgtc cctgccgatc cgcggtgaag
     7501 atcgagatcg gcgcgggtga gaagccgcat cccgactacg acgtgcacgt cgacatcctt
     7561 ccgctgcccg acatcgaagt gatcagctgg atcgaccggc tgcccttcac cacggcgtcg
     7621 gtggacgcgt tgcgcgccaa ccacgtgctc gaacatcaaa gttacgaact cgtcgagccg
     7681 accctgcggg agtgggctcg agtgatgcgg cccggcgcga cactggacat cggggtgccg
     7741 gatgcccgat ttgtcgccgg gcaatgggtg cgtggcgaga tcgacaccgc cgaagccaac
     7801 tactggatcc tcggtggtca ctccgaccgg gccgcgcacc aaggcgtcga cgctcacggt
     7861 gtaccccgct ggatctggaa cgcccaccac accatgttcg acgccgaatc actgcgcgct
     7921 ctggtctctc actgcgggtt caccgacctg gacatcttca cctatgacgt ccgcaacctg
     7981 cgctgctacg cgctgcgcgc cccgtgaacg gcgatgcctt attctcacca ttgtgatcaa
     8041 gtggatccgg cgtcagctga ccgacgtgaa ccatgtcgat cacgtggttt cgaagtggat
     8101 cggccagcat ccgcctcacc cgcttgacgt cgccatgacg aaactgagca gcgcggcgaa
     8161 ccacagcgtg ctctggttct cggtagcggc ggtgctggcc gccaggaagg gcgccacccg
     8221 gcgcggtgcc cttcgcggtg tgctgtcgat cgctgcaacc agccttaccg ccaacgccgt
     8281 actcaagccg ctgatgccgc gccgccgccc gcctgcccgt gagctgcccg cataccagtc
     8341 gtttcccacc ccaccgaagt cgtcatcgtt cccgtccggg catgccgcgt ccgcggcagc
     8401 gttcgccgct gccgtcgcgt tggagagccc caagcctgga ttggtcatcg ctccgctggc
     8461 cgccgcggtg gcctactccc gggtccatat cggcgtgcac tggatgtcag atgtcgtcgt
     8521 gggcgcggcg gtcggctccg gcatcgcgct gggtacccgc cgctggtggc cggtgcggac
     8581 gactgacgag gcccaggcca gtcggtgcga cgacgcaccg gtgctgccgg ccggtgccgg
     8641 tctggtgctg gtggcgaacc aacgatccgg cgatcccgac tacgacccgg tcgccgagat
     8701 aaccgaggct ctgccggccg ccacagt
//
LOCUS       DASVXZ010000597         1544 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_155374, whole genome shotgun sequence.
ACCESSION   DASVXZ010000597 DASVXZ010000000
VERSION     DASVXZ010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155374"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..468)
                     /locus_tag="VF788_12580"
     CDS             complement(<1..468)
                     /locus_tag="VF788_12580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935002.1"
                     /translation="MTVNETERAELAQRRDRIRDELMPARQDRPVSSARGIHHTALIS
                     SDVRRTVEFYQGLLGFPLIDMFENRDLPGSTHFFFDVGNGNTIAFFDLPGVEVGPYAE
                     VLGGLHHLAISMEPPRWQQIRTKMDAQGVDYQLESGTSIYFRDPDGARVELIAD"
     gene            complement(455..1042)
                     /gene="mug"
                     /locus_tag="VF788_12585"
     CDS             complement(455..1042)
                     /gene="mug"
                     /locus_tag="VF788_12585"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020663852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000700 - mismatch base pair DNA
                     N-glycosylase activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HEX8935003.1"
                     /translation="MKPAELAAARDRTIPDVLPGPEDPPLRVLFCGINPGLVSAATGH
                     HFARPGNRFWPVLHGAGFTPRRLRPDEQHLLPSFGLGITNIVPRATARADELSVAELV
                     AGGERLRDLVRSQRPIALGVVGITAYRVAFAAPRATVGPQPDTLGATLVWALPNPSGL
                     NAHWSLPAMVTEFGRFALAVAAAAPARDAWTCDRE"
     gene            complement(1039..>1544)
                     /locus_tag="VF788_12590"
     CDS             complement(1039..>1544)
                     /locus_tag="VF788_12590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935004.1"
                     /translation="ADRGRAGWAAVTFGVALASKQHVLLLVPLLLLCRFRPRELAVTA
                     GTAAVLTLPWLLANPTRFLRCTVTLFVNAPPRTDSFSLWLFVPQPARLPVLVVALLAG
                     YLLAWWYCPPTGAGFLVGCAVVLSTFGLLNKQTFLNQWWLVGALIVAGLALAPRRVAS
                     EALGSAR"
BASE COUNT          281 a          521 c          544 g          198 t
ORIGIN      
        1 gtcggcaatc agctcgacac gagcgccgtc ggggtcccgg aagtagatgg acgtgccgct
       61 ctcaagttgg tagtccacgc cctgggcgtc catcttggtc cggatctgct gccagcgcgg
      121 aggttccatc gagatggcca ggtggtgcag gccaccgagc acctcggcgt agggaccgac
      181 ctccacgcca ggcaggtcga agaacgcgat ggtgttgccg ttgccgacgt cgaagaagaa
      241 gtgcgtggag ccgggcaggt cccggttctc gaacatgtcg atcagcggga agccgagcag
      301 gccctggtag aactccacgg tccggcgcac gtcggaagag atcagcgcgg tgtggtggat
      361 gccgcgtgcg ctgctgaccg gccggtcctg ccgcgccggc atcaactcgt cacggatccg
      421 gtcgcggcgc tgggccaatt ctgcgcgttc agtttcattc acggtcacag gtccaagcat
      481 cccgcgccgg cgcggcggcg gccactgcca gcgcgaagcg gccgaactcg gtgaccatcg
      541 cgggtaggga ccagtgcgcg ttcagcccgc tcgggttggg tagtgcccat accagggtgg
      601 cacccagggt gtcgggctgc ggcccgacgg tggctcgcgg cgcggcgaac gccacccggt
      661 aggcggtgat cccaaccacg cccaaggcaa tcggacgctg tgaacgcacc agatcccgga
      721 gtcgctcacc gccggccacc agctcggcca cactgagctc atcggcacga gcggtggccc
      781 ggggcacgat gttggtgatg cccaatccga atgagggcag caggtgctgc tcatcgggcc
      841 gcagccggcg cggggtgaag ccggcgccat gcagcaccgg ccagaaacgg ttgcccggcc
      901 gggcgaaatg gtgacccgtg gcggcggaga ccagacccgg gttgatcccg cagaacaaca
      961 cccgaagcgg cgggtcttcc ggcccgggca gcacgtcggg gatcgtgcgg tcccgggccg
     1021 cagcgagctc ggcgggcttc accgcgctga gcctaaggct tcgctagcca cgcgccgtgg
     1081 tgccagcgcc aacccggcca cgatcagcgc gccgaccagc caccactggt tgagaaaggt
     1141 ctgcttgttc agcaaaccga aggtgctgag caccaccgcg cagcccacca gaaagccggc
     1201 accggtcggc gggcagtacc accaggccag cagataaccc gccagcagtg ccacgaccag
     1261 caccggcagc cgggccggct gcgggacgaa cagccacagc gagaaggagt ccgttcgcgg
     1321 cggcgcgttg acaaacagcg tgacggtgca gcgcaggaac cgggtgggat tggcgagcag
     1381 ccaggggagc gtcagaaccg ctgcggtccc agccgtcaca gccagctctc ggggccggaa
     1441 ccggcacagc agcagcaacg gcaccagcaa cagcacgtgc tgcttgcttg ccagtgctac
     1501 gccaaaggtc acggcagccc agccggcgcg gccccgatcg gcca
//
LOCUS       DASVXZ010000598         1760 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_513169, whole genome shotgun sequence.
ACCESSION   DASVXZ010000598 DASVXZ010000000
VERSION     DASVXZ010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513169"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..903
                     /locus_tag="VF788_12595"
     CDS             250..903
                     /locus_tag="VF788_12595"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HEX8935005.1"
                     /translation="MSPLLANLFMHYAFDMWMTREFPGIRFERYCDDVVVHCVSERQA
                     RFVWDTVAGRLAEVGLELHPDKTRLVYCKDSRRRRTHEQISFTFLGYQFRSREAFDRK
                     HGVAFTGFLPGVSPDKLTEMSRRIRSWRLHRRVNLTLDYLAEDINQVVRGWLAYFTRF
                     YPTAVGPLCQRINGHLMRWARKKYKRLRSRKRARTWLKGVMDRAPSMFAHWTVSSAL"
     gene            1052..1312
                     /locus_tag="VF788_12600"
     CDS             1052..1312
                     /locus_tag="VF788_12600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="HEX8935006.1"
                     /translation="MSEPGSKPFEISKQIVAAAFEKVRSKKGAAGVDGVTVEQFAQDY
                     KNNLYKLWNRMSSGSYFPAPVRMVEIPKDGGHGTRVLGVPTV"
     gene            1319..1750
                     /locus_tag="VF788_12605"
     CDS             1319..1750
                     /locus_tag="VF788_12605"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8935007.1"
                     /translation="MAQTVAVAYLEPLVEPVFHPDSYGYRPGRSPLDAVAACRQRCWQ
                     YAWVIDLDIQGFFDNLDHDLILKAVAHHTNDPWILLYVARWLKAPLRQADGSVTARDR
                     GSPQGGLCSAEHKPPYEQRWVMRSVGLLGLVRARSGVERCA"
BASE COUNT          351 a          511 c          568 g          330 t
ORIGIN      
        1 gcagccccga taccagccca acgtccagtc cttgtaaccc agacgccgca actccgcgtc
       61 caaaccgaca ccagcgcaga cacagtcgcc atcacagccg acttccgatc atgcaggctc
      121 ggcaccatgc cgaacccgtg atcggaatcc tcgacgcgtt atgcgcagcg ctcgacccct
      181 gaccgtgccc tgaccagacc caacaggccg acgctgcgca taacccagcg ctgctcatag
      241 ggtgcggcga tttccccgtt gttggcgaat ctgttcatgc attacgcgtt cgacatgtgg
      301 atgacacggg agttcccggg aatccgattc gagcgctact gcgatgacgt ggtggtccat
      361 tgtgtcagcg aacgtcaagc ccgtttcgtg tgggacacgg tcgccggccg gttggccgag
      421 gttgggttgg aacttcatcc cgacaagacc cgtctggtct attgtaagga cagtagacga
      481 cgcagaacac atgaacagat atcgttcacg ttcctgggtt accagttccg ctccagggag
      541 gctttcgata ggaaacacgg agttgccttc accgggttcc taccgggagt cagcccggac
      601 aaactgacgg agatgagccg ccggataagg tcgtggcggc tgcatcgacg ggtcaacctc
      661 actctcgact acctcgcgga agacatcaat caggtcgttc gcgggtggct cgcgtacttc
      721 acccggttct atccgaccgc ggtgggtccc ctctgtcaac gcatcaacgg ccatctgatg
      781 cgatgggcgc ggaagaaata caaacgactg cggagccgaa aacgggcacg gacatggctg
      841 aaaggcgtga tggacagagc gcccagcatg ttcgcgcact ggacggtctc cagcgctctc
      901 tgaggatgga cgacacgagc cgtatgagcc gcgaggctca cgtacggatc tgtgggggcc
      961 ggcgggtgca actcccgccg gctacccggc gaaggggacg ggtcatccag gtttgaactg
     1021 atggtcaacc ggagtgcccg ggaggagccg gatgagcgag ccaggctcga agccgtttga
     1081 gatctccaag cagattgtcg cggcggcgtt tgagaaggtc aggagcaaga agggagcggc
     1141 cggggttgac ggtgtcacgg tcgagcagtt cgcacaggat tataagaaca acctgtataa
     1201 actgtggaac cggatgtcgt cggggagcta ttttcccgcc ccggtgcgga tggtggagat
     1261 tcccaaggat gggggtcatg gcacgagggt cctcggagtg cccactgtct aagatcgaat
     1321 cgcgcagacg gtggcggtgg cctatctgga gccgttggtg gaaccggtgt ttcatcctga
     1381 ttcctacggc taccgtccgg gtcgctcacc gctggacgcg gtggctgcgt gccggcagcg
     1441 gtgctggcag tacgcgtggg tgatcgattt ggacattcaa ggcttcttcg acaaccttga
     1501 tcatgatctg attctcaagg cggtcgccca ccacaccaac gacccatgga tccttctata
     1561 cgtcgcgcgg tggctaaagg cgccgctgcg gcaggcggac ggatcggtca ccgctcggga
     1621 tcggggcagc ccgcaaggcg gcttatgttc agctgaacat aagccgccct atgagcagcg
     1681 ctgggttatg cgcagcgtcg gcctgttggg tctggtcagg gcacggtcag gggtcgagcg
     1741 ctgcgcataa cgcgtcgagg
//
LOCUS       DASVXZ010000599         1915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1018442, whole genome shotgun sequence.
ACCESSION   DASVXZ010000599 DASVXZ010000000
VERSION     DASVXZ010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1018442"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VF788_12610"
     CDS             <1..208
                     /locus_tag="VF788_12610"
                     /inference="COORDINATES: protein motif:HMM:NF015415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEX8935008.1"
                     /translation="GSNNIQCTAAEQALAGKSLNSSTIDQAARLAAEAAQPKTDVRGS
                     AEYKRHVVYTFVQRGLSSPEARAA"
     gene            266..778
                     /locus_tag="VF788_12615"
     CDS             266..778
                     /locus_tag="VF788_12615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX8935009.1"
                     /translation="MEERRINVVVNGEPKSVDVEPRILLAHFLREILGLTGTHIGCDT
                     TNCGVCTVLVDGLPMKSCTMFAVMLDGHEVTTVEGLGMPAELHPIQQGFREEHGLQCG
                     YCTPGMMLACKAILDENPNPTEEDIRWGLAGNLCRCTGYQNIVKAVLWAAEKIRSEGG
                     AYTLAARSRR"
     gene            791..>1915
                     /locus_tag="VF788_12620"
     CDS             791..>1915
                     /locus_tag="VF788_12620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX8935010.1"
                     /translation="MAQALDEIKIGGLGSSRKRVEDDRFLVGKGNYTDDFKLPNMVHM
                     EILRSPLAHARIKSIDTSKAWQIPGVHMVLTGEMAAQHNLAWMPTISYDTQPVLATDK
                     VRFQGQEIACVVADDPYIAKDGCEAIVVEYEPLPVIVNPYQAVAEGAPIIRDDKEGQN
                     DNICYRWEVGDREGTERAFAQADLVSKIELHYPRSHPSPIECCGSIADYNPATTKLTV
                     YMTTQAPHIIRAAVAIVAELPEHMIRIISPDIGGGFGNKVPVYPGYVCSILCSILLAR
                     PVKWIEDKTGNLISTHYARDIYYKGELALRKDGKILGVRFHCDSDNGSSFSDAQPTKF
                     KIGLIHSAFAAYAIPFGYMTAQGHYTNKAPGGVAYRCSFRV"
BASE COUNT          409 a          572 c          593 g          341 t
ORIGIN      
        1 ggggtcgaac aacatccaat gcaccgcggc cgagcaggcg ctggcgggta agtcgctcaa
       61 ctcaagcacg atcgatcagg ccgcgcggct ggcggcagag gcggctcaac ccaagaccga
      121 cgttcgcggc agcgcggagt acaagcgcca cgtggtgtac acgttcgtcc agcgtgggct
      181 cagcagccca gaggcccgag cggcctgacg gctcgaattc ggacccgaat atgtccttca
      241 atcatggcga cgtcaaggag gcggcgtgga agagcgacga attaacgtcg tggtgaacgg
      301 ggaaccgaag tctgtcgatg tcgagccgcg catactgctg gcccatttcc tccgtgaaat
      361 cctgggcctg accggtacac acatcggctg cgacacgacg aactgcggtg tctgcaccgt
      421 actggtagac ggcttgccca tgaagtcgtg caccatgttc gctgtcatgc tcgacgggca
      481 cgaggtcacg accgtggaag gcctcgggat gcccgctgag ctgcacccca ttcagcaggg
      541 cttccgggag gagcacggac tgcagtgcgg ttactgcact cccgggatga tgttggcatg
      601 taaagcgatt ctcgacgaga accccaaccc gacagaggaa gacatccgct ggggtctggc
      661 cggcaacctc tgccgttgca ccggttacca aaacattgta aaggccgtgc tctgggccgc
      721 tgagaagatc cggtccgagg gcggagcgta cacgctggcg gctagaagcc gacgataagg
      781 gagatgtgac gtggcgcagg cgctagacga aattaagatc ggtggcttgg ggtcaagccg
      841 taagcgcgta gaggacgacc ggttcctggt aggtaagggc aactacactg atgacttcaa
      901 gttgcccaac atggtgcaca tggagatcct ccgtagccca ttggcccacg cccggatcaa
      961 gtcgatcgac acaagcaaag cgtggcagat ccctggtgtg cacatggtgc tcaccggcga
     1021 gatggcagcc cagcacaact tggcgtggat gccaacgatt tcctacgaca cccaaccggt
     1081 gctggcgact gacaaggtcc gtttccaggg tcaggagatc gcatgcgtgg tcgccgacga
     1141 cccctacatc gccaaggacg gctgtgaggc gatcgtcgtc gagtacgaac cgcttcctgt
     1201 gatcgtcaac ccttaccagg cggtagcgga gggcgccccg atcatccggg acgacaaaga
     1261 aggacagaac gacaacatct gctaccggtg ggaggtcggt gaccgcgagg gcaccgaacg
     1321 cgcgttcgct caggccgacc tggtctcgaa aattgagctg cactacccga ggtcgcaccc
     1381 gtcaccgatc gagtgctgcg gatcgattgc ggactacaac ccggcgacga ccaagttgac
     1441 cgtctacatg acaactcagg caccgcacat cattcgggcc gcggtggcga tcgtcgcgga
     1501 gcttccggag catatgatcc ggattatttc tccggacatc ggcggtggct tcggcaacaa
     1561 ggtgccggtc tatccgggct acgtctgctc gatcctctgt tccatcctgc ttgcccggcc
     1621 ggtcaagtgg atcgaggaca agaccggtaa cctcatttcg acgcactacg cccgcgatat
     1681 ctattacaag ggcgagctgg cgctacgcaa ggatggcaag atcctcggtg tgcggttcca
     1741 ttgtgattcc gacaatggat cgtctttctc agacgcccag cccacaaagt tcaagatcgg
     1801 gctgatccac tccgcgttcg ccgcctacgc catcccgttc ggatacatga ccgcacaggg
     1861 tcactacacg aacaaggcac ccggtggagt cgcgtatcga tgttcgttcc gggtg
//
LOCUS       DASVXZ010000600         2944 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_872728, whole genome shotgun sequence.
ACCESSION   DASVXZ010000600 DASVXZ010000000
VERSION     DASVXZ010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872728"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..623)
                     /locus_tag="VF788_12625"
     CDS             complement(<1..623)
                     /locus_tag="VF788_12625"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935011.1"
                     /translation="MALSGAMVSVPNIRRRRLGAALRRLREGSGMSLEVVAKELGWST
                     SKVSRIELAKIAVTPADVRALLGVLDALSEEVETLVSLAGEDRQPGWWRQYAEVLPPW
                     FEGYLSLESEAARLLAYESEVVPGLLQTEQYAAETLRHSLYTPLPDEAARAAELRRTR
                     QVRLVGPDPIYLDVVINEGALRRVVGGREVMRAQLTRLIEATELPNVA"
     gene            complement(1045..1353)
                     /locus_tag="VF788_12630"
     CDS             complement(1045..1353)
                     /locus_tag="VF788_12630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935012.1"
                     /translation="MCRVGAIQTRFLLRYLVWMVFDDDLRDLPALAAVPIEAYVSAPL
                     DREMLRDVIDGLARLARLRRTATGSDAPAAEICRRQGNQTKHSTNAYRYRMITDCEHT
                     "
     gene            2212..2586
                     /locus_tag="VF788_12635"
     CDS             2212..2586
                     /locus_tag="VF788_12635"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8935013.1"
                     /translation="MTSAVTLVLVHGAWHGPWCWQLLMEQLTGVEVRAVPLSSSGNDP
                     SKLGDLYEDAEIVRSAVGDVEGLVVVCAHSYGGAPVTEVLVGMRKVGRLVYLCAWQLD
                     VGESLLCARQVVPPPWWDVHVA"
BASE COUNT          545 a          938 c          909 g          552 t
ORIGIN      
        1 gccacgttgg gcaattcggt cgcctcgatc aaacgggtca gctgagcgcg catcacttcc
       61 cggccaccca cgacccgccg aagcgcgccc tcgttgatca ccacatccag gtatatcggg
      121 tcgggaccaa cgagccggac ctgccgagta cggcgcaact ctgctgccct ggctgcttca
      181 tccggtaacg gtgtgtagag cgagtgccgg agtgtctcgg ctgcgtactg ctcggtctgc
      241 agcaggccgg gcacgacctc cgactcatac gccagcaacc gcgcagcttc ggactccaag
      301 gacaggtagc cctcaaacca cggtggcaac acctcggcgt actggcgcca ccagcccggt
      361 tgacggtcct caccggcgag actgaccaga gtctctactt cctccgacaa cgcatcaagc
      421 acacccaaca acgcacgcac atccgccggg gtgaccgcga tcttcgccag ttcgatgcga
      481 ctgaccttgc tggtcgacca gcccaactcc ttggccacaa cttccagact catgccgctg
      541 ccctcacgaa gccgccgcag cgccgctcca agacgccgcc ttcggatgtt cggcaccgac
      601 accatggccc ccgacaatgc cacagcaact ctctcccatc atccagctgg tggatgagac
      661 cagcatcctc aatgattgtg caaattgctc agcaagaaac atgatctggt gagtgcgcac
      721 cgtacacccg gcaaacatca gtgatcaaca gggaatgtca ccgcccggtc cacccgctga
      781 cccagcggta ctgctgaaca actcagcagc gacgcaccaa cggcagggcg aaacccccgg
      841 gagcaatgct tgaaacctaa tagcactgca cggcaccgga tgacctctac ttaaaacccg
      901 gagctggact ccacgccggg cggctcagcc gatcggcagc gggacgaact cgatcccgca
      961 caacgagcga ccgagccacc tccgggcagc cacacgccct tgtgagtggc gccgtcgcct
     1021 aagcccgcca cataccagtg caactcaggt gtgctcacaa tctgtgatca tcctgtaacg
     1081 gtatgcgttc gtcgagtgct ttgtctggtt tccctgacgt cggcagatct ccgcagccgg
     1141 cgcatcgctg cccgtggcag tcctgcgtag tctggctagc ctggcgagtc catcgatgac
     1201 gtcgcgcagc atctcccggt cgagcggggc cgacacatag gcctcgatcg gtactgcggc
     1261 caacgcgggg agatcacgca agtcatcatc gaataccatc caaacgaggt agcgcagcag
     1321 aaatctcgtc tggattgcac ctacgcgaca cacccgaact gtctaacgag actcacggat
     1381 cgttccggtc cgaacccggt gcccgccact acgcggacgc cttcggtgct ggccgcctga
     1441 ccaccctgct cgacggtctg cccgccgtgg ccgacctggg ctatgtcggg agtcgagggt
     1501 agtgacctcg tcgcgaggtg tactcggatg atcgcgtcgg cccggctggg catcccgtgc
     1561 tcggtgaaga aggcgagaag actgcgagcg cccttcgcac acggtcaagt cgacggttcg
     1621 cggcacgcag gtggcgacgc cggtcgggga gaagctggga gaggtcgccg acgtccacct
     1681 gtggcggatc cgggaggtgc cggcacgttt gtcgcagcgg atccaatctc taactctatg
     1741 agcggtgtgc tcggactcta gcgccccgtt tatgcagcta gcgcccccgg caggactcga
     1801 acctgcagcc tagtgattag caggacccac taccggacag tgccggtcat gaccgaacag
     1861 gtcgtctggt cagcgcagac acttgtcaac ggtgactgct ggtaccgggc attgacggtt
     1921 gttccgggta agtaaagggt gagatgatca cggaatgatc acccggcggc ccgatatgag
     1981 gcgaagcaag gggacgcaga cggcacggtt gtggcgctcg cggtgtgggc atgagggccg
     2041 ggcactagat cgcgacgtgc ccgactttca tagcctggta gcgcgccagc ggtggttggt
     2101 tcgctgatcc ggcccgatct gctggtttgg tcttgttgtg tcctgttgcc tcccgacatg
     2161 atgatcaatc tgtgggcaag tggctgtggt cttcaacggc aggaggtgat catgacttca
     2221 gctgtaaccc tcgtcctcgt gcacggcgct tggcatggcc cctggtgctg gcaactgctg
     2281 atggagcagc tcacaggtgt tgaggtgcgc gcggttcctc tctcaagcag cggcaacgat
     2341 ccctccaagc tcggggatct atatgaggat gctgagatcg ttcgatctgc tgtcggggac
     2401 gtggaggggc tggtggttgt ttgtgcccat tcctatggcg gtgcaccggt taccgaggta
     2461 ttggtcggca tgcgcaaagt ggggcgtctg gtttacctct gcgcctggca gcttgacgta
     2521 ggcgagtcgc ttctctgcgc gcgacaggtc gttccgccgc catggtggga cgtgcatgtg
     2581 gcgtgaaatc cctagcacat atgcgatctg tgagaaggac tccgcgattc tgcctgccgt
     2641 tcaacagcgg atggggcggc ggccccaccg cgttgagcgg ctcaacacct cgcactcccc
     2701 atttatgagc cggccatcgc gtgtcgaatc tgagattgtt cagttcaacg cccgtggaca
     2761 gatcagcctc cccgccagcg cacctggggg cgatcccgtt agcgatcgct attaggctgg
     2821 tgggcgtcct tgttgcggcg ggcggcgggc ggcctgtagt gcggtggcaa gtggctcgcc
     2881 gtcggctggc gcttccggcc cgatcaccga gaaggcgcct ttggcctcgt agacgaggta
     2941 gcgg
//
LOCUS       DASVXZ010000601         2048 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1589429, whole genome shotgun sequence.
ACCESSION   DASVXZ010000601 DASVXZ010000000
VERSION     DASVXZ010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1589429"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1128)
                     /locus_tag="VF788_12640"
     CDS             complement(<1..1128)
                     /locus_tag="VF788_12640"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEX8935014.1"
                     /translation="MASDLDPAAELLVPGLPALLEHIDQAIIVQDSSGCIQLLNAAAR
                     LLFPDLDIGDEFDRAGESFVTDAGGHRVCGRLRRLGSGWQAWLVTPTSGRRTANESTT
                     TLADQDDFMLAASRELMLGSGHEAAAGALARLAVPTVGEQAAVLLPAPRARMSWWRCV
                     DEVGEAAKGMARAPASHTAPVLASMLRGTTVNPPTAIVTVPVDELPALAAMFGTDLAE
                     RLPVMAVPLRGLDRTEGLLVVVRPVAVSLLAQLAALAGPTIGASRRRCEQASALDLLQ
                     APLMPAGPGTLPKLPGLELGVAYQAAGELAVGGDFYLIRPTGDGSAIFGLGDVCGKGA
                     EALAESGRVQHSLAALMVTERDPTQLLYLLNRALLAAGRTVF"
     gene            1354..>2048
                     /locus_tag="VF788_12645"
     CDS             1354..>2048
                     /locus_tag="VF788_12645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020674256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEX8935015.1"
                     /translation="MSVAESLPERANPVDTVALERILLAVEELRDGNFRRRVVVTDTS
                     LTGRIATVINEIAQRNQSLVGELVRVREAVGQDGRTRERLAEESGGGWSLAASAINGL
                     IDDLTRPTTELARVLAAVSEGDLSSRVSDQLLRGDFARLGHTVNGLLDQLSLFAAEVT
                     RVAREVGTEGRLGGQAHVPGVAGTWRDLTDSVNVMAGNLTDQVRSIAQVATAVARGDL
                     SRKITVDARGEIS"
BASE COUNT          353 a          690 c          691 g          314 t
ORIGIN      
        1 gaaaactgtc cgccccgctg ccagcaacgc ccggttgagc aggtagagca gctgggtcgg
       61 atcccgctcg gtcaccatca gcgcagccag cgaatgctgc acccggccac tttccgcgag
      121 tgcctcggcg cccttgccgc atacgtcacc gagcccgaag atggcactgc catcgcctgt
      181 ggggcgaatc aggtagaaat caccacctac cgccagttcg ccggccgcct ggtacgccac
      241 acctagttcc aagccaggca gcttcggcaa tgtgcccggc cccgccggca tgagtggagc
      301 ctgcagcagg tccagcgcgc tggcttgctc acatcgcctg cggctagctc caatggtcgg
      361 cccggccagt gcggccagct gggcgagcaa gctgaccgcg acaggccgca ccacgaccag
      421 caatccttcg gtccggtcca gtccccgcag gggcactgcc atgactggta accgctcggc
      481 gaggtcggtc ccgaacatcg ccgccagcgc gggaagctcg tcgaccggca cggtgacgat
      541 ggcggttggg gggtttacgg tcgtcccgcg cagcatgctg gcgagtaccg gcgccgtgtg
      601 cgaggccggc gcccgagcca tgcctttcgc ggcttccccc acctcatcaa cacagcgcca
      661 ccaggacatg cgggcccgtg gcgcgggcag cagcaccgcg gcttgctccc ccaccgtcgg
      721 aacagccagc cgagccaggg caccagccgc agcctcgtga cccgacccga gcatcagctc
      781 acgactggct gccagcatga agtcgtcctg gtcagccagt gtcgttgtgc tctcattggc
      841 ggtacggcgg ccgctggttg gggtgaccag ccaggcttgc caaccacttc caagccgccg
      901 caaccgtccg cagacccggt gaccgccagc gtcagtgaca aatgactcgc cagcacggtc
      961 gaactcatcg ccgatgtcca ggtcggggaa cagcagccgg gcggctgcat tgagcagctg
     1021 gatgcaaccg gaggaatctt gcacaatgat ggcctggtcg atgtgttcga gcagggccgg
     1081 cagtccgggc acgagcagct cagcagcggg gtccaggtca gatgccacag catctcctcc
     1141 ccgatccgag cgcgtcgcag cgagggtagt cgtaagacta gtgtgctcga agttcgagac
     1201 accctggtcg aacctgagtt cgagaactgg cacaccaggc cagctcgaaa accaaggcca
     1261 atcgtggcac gctgcgggca ttgagactgt gacgtccggg gatgtccgga gacgttggga
     1321 tgttctggga gggtcatcgt gagcgctcag cccgtgtcgg tcgcagaatc gcttccagag
     1381 cgagcaaatc cggtcgatac cgtcgcgctg gaacggatcc tgttggcggt ggaggagttg
     1441 cgcgacggca acttccggcg gcgcgttgtg gtcactgaca ccagcctcac cggccgcatc
     1501 gcgacagtga tcaacgagat cgcgcagcgt aaccagtcct tggtcggtga actagtccgg
     1561 gtgcgggagg cggtcggcca ggacggccgg acccgtgagc ggctcgccga ggaaagcggc
     1621 ggcgggtggt cgctggctgc ctcggcaatc aacgggctga tcgatgacct gaccaggccc
     1681 accaccgagt tggccagggt cctggccgcg gtgtccgaag gtgacctgtc ctcgcgggtg
     1741 tccgaccagc tgctgcgcgg cgatttcgcc cggttggggc acaccgtcaa cggcctgctc
     1801 gaccagctgt cgttgttcgc cgctgaggtg acccgggtgg cccgcgaagt cggcaccgag
     1861 ggccggctgg gcggtcaggc ccacgtcccc ggggtggccg ggacctggcg cgacctcacc
     1921 gactcggtca acgtgatggc cggcaacctg accgaccagg tgcgcagcat cgctcaggtg
     1981 gccaccgcgg tggcccgcgg cgatctcagc cgcaagatca ccgttgacgc gcggggcgag
     2041 atctcgga
//
LOCUS       DASVXZ010000602         2067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_929694, whole genome shotgun sequence.
ACCESSION   DASVXZ010000602 DASVXZ010000000
VERSION     DASVXZ010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_929694"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..384
                     /locus_tag="VF788_12650"
     CDS             <1..384
                     /locus_tag="VF788_12650"
                     /inference="COORDINATES: protein motif:HMM:NF025304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935016.1"
                     /translation="ISRELAAGRSYRSIGRLLNRDHSVVSREVARNGGRDTYRAISAQ
                     RRADDNRARPKPRLLATNTALHDAVKSGLTLKWSPRQISKRLRQDFPDDHTMRVSQET
                     IVRHEAPGDRVEVRDLRRRAVAAVW"
     gene            916..1779
                     /locus_tag="VF788_12655"
     CDS             916..1779
                     /locus_tag="VF788_12655"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8935017.1"
                     /translation="MNTDEPELTLYRAERRVREIQTKLHRWAVDEPHRRFDDLYNLVG
                     DPAFLLVAWDRVRGNKGARTAGVDGQTAYYLEAVRGVEGFLEDLREDVKTRRFRPLPV
                     RERMIPKANGKLRRLGIPAVRDRVVQAALKLVLEPIFEADFLPCSYGFRPNRRAHDAV
                     AEVRHFTSRSYEWIVEGDIAACFDEISHPALLDRVRQRIGDKRVLALVKAFLKAGILV
                     QDGSQKDTKTGTPQGGILSPLLSNVALSVLDEHFAAAPGGSQSNDTDRRKRRRHPDLA
                     QIVDLGVVRVR"
     gene            1862..>2067
                     /locus_tag="VF788_12660"
     CDS             1862..>2067
                     /locus_tag="VF788_12660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935018.1"
                     /translation="MRTASGATAVQIVHGSRRGARSIEHIGSAHDELELEALKAAARQ
                     RLVGGQAQLDLGLDPAATATVAAGS"
BASE COUNT          383 a          573 c          732 g          379 t
ORIGIN      
        1 atctctcggg agcttgctgc cggccgctcg tatcggtcca ttgggcggct gctgaaccga
       61 gaccattctg ttgtctctcg cgaagtggcc cgcaatggtg gccgcgacac ctaccgggcc
      121 atctcggcgc agcgtcgagc cgacgacaac cgcgcccggc cgaagccgcg gctgctggcg
      181 acgaacacgg cattgcatga cgccgtcaag tctggactga cattgaaatg gtctccccgg
      241 cagatcagca agcggttgcg tcaggacttt cctgacgacc acactatgcg agtgtcgcag
      301 gagacgattg tgcgccacga ggcgccaggt gatcgagtgg aggtgagaga ccttcgccgt
      361 cgggccgtcg cagcggtctg gtagaagctg ggggcagcct gatccgggga acgccgggaa
      421 gggtggaaag cggccccgac aacgacggga cggattggta ctgccagacg gtccgggccc
      481 ggcaagcaag accagaaggt gtaccgagag tgaaccagtg gttgacgtcc cgtaagcgtg
      541 cggccggctc aaatctggcg gataagggcc ggtatgcagc gcgtgagctg tgccgcgagg
      601 ggaggtcaac tccgaagccg gttaatcgtg ccggtcagga ggccatggtg acagtctgcg
      661 gcgtagccgt ggcgatgctg ccgggacaaa gctggacgcc tccctggtca atcgattccg
      721 tggtgaacgt gggaaccatc tccggttgcc ctgtcctgcg gccagccagg tcgcaggtgg
      781 gcaggttcgt tgccgactgt gggccgggag atggggcgga ggtcccgtag tagtccgggc
      841 acgtgaaaga cgtgtacatg gcgaagggga ccagcaagtc ggcagggagg acgctgacat
      901 gcccggaggt cgccggtgaa taccgacgaa ccagaactca ccctgtatcg ggctgagcga
      961 agggtacggg agattcagac caaactgcac cgatgggcag tcgatgaacc tcatcgcagg
     1021 ttcgatgatc tctataacct tgtcggcgat cccgcgtttc tgttggtagc gtgggatcga
     1081 gtgcggggca acaagggtgc gcgtacggcc ggagtggacg ggcaaaccgc ctactatctg
     1141 gaggccgtgc gtggtgttga agggttcctg gaggacctac gagaggatgt aaagactcgt
     1201 aggtttcgac ccttacccgt gcgagagcgg atgattccga aagcgaacgg gaagctccgt
     1261 cgcttaggaa tacccgcagt ccgggacagg gtggttcagg cagctctgaa actggtgttg
     1321 gagccgattt ttgaggcgga tttccttccg tgttcctacg ggttccgccc gaatcgccga
     1381 gcgcatgacg cggtcgccga ggtgcgtcac ttcacgtccc gttcgtatga gtggatcgtg
     1441 gagggcgaca tcgcggcctg tttcgacgag atttcgcatc cggccctcct ggaccgggtt
     1501 cgacaacgta tcggtgacaa acgcgtcctg gccctggtga aggcgtttct caaagcggga
     1561 atccttgtgc aggatggttc gcagaaagat accaagaccg gaaccccgca aggtggaata
     1621 ttatcaccgt tgctgtcgaa tgtggctctc tcggtgctgg atgagcattt cgcagccgca
     1681 ccgggtgggt cgcaaagcaa cgataccgac cgaaggaaac gccgtcgcca tcctgacttg
     1741 gctcaaattg ttgatcttgg ggtagtgcgg gtgcgctgac ctgcgggttg gctgtcgggg
     1801 ctggctggat ttgcgcacta agttgacctc gtagcctcgg ccggtggcgt acgtgcgcac
     1861 ggtgaggacc gcgtccgggg cgacggcggt gcagatcgtg cacggctccc ggcgtggtgc
     1921 gcgctcgatc gagcacatcg gctcggcgca cgacgagctg gagctcgagg cgttgaaggc
     1981 cgccgcccgt cagcgactcg tcggtgggca ggcgcagctg gatctcggcc tggatcccgc
     2041 cgcgacagcc acggtggcgg cagggtc
//
LOCUS       DASVXZ010000603         2147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1589865, whole genome shotgun sequence.
ACCESSION   DASVXZ010000603 DASVXZ010000000
VERSION     DASVXZ010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1589865"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..469
                     /locus_tag="VF788_12665"
                     /pseudo
     CDS             317..469
                     /locus_tag="VF788_12665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012173261.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(530..787)
                     /locus_tag="VF788_12670"
     CDS             complement(530..787)
                     /locus_tag="VF788_12670"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEX8935019.1"
                     /translation="MLEELAPAACHVTEQYGNNSIEADHGRLKSRLQAMRGLKQLRSV
                     QVITAGHAFIQNIRCGHYELGVEETVNLRVLAAFDELVMAI"
     gene            complement(843..950)
                     /locus_tag="VF788_12675"
                     /pseudo
     CDS             complement(843..950)
                     /locus_tag="VF788_12675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674029.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            999..1217
                     /locus_tag="VF788_12680"
                     /pseudo
     CDS             999..1217
                     /locus_tag="VF788_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1352..1798)
                     /locus_tag="VF788_12685"
     CDS             complement(1352..1798)
                     /locus_tag="VF788_12685"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX8935020.1"
                     /translation="MGALVQVGDIGDGGGMEISSTRHRISSEPDWYERYAISLGIRVG
                     DLVFVSGQAAVDEHGQTVGGDDFDAQARQVFANLATVLGNAGTGLEHVVKVTIFVTDM
                     AVIDRVVQLRREFFTPPYPADTIAQVASLADPAWQIEIEAIAVVPR"
     gene            1924..>2147
                     /locus_tag="VF788_12690"
     CDS             1924..>2147
                     /locus_tag="VF788_12690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935021.1"
                     /translation="MLIRDAVPAADAQLARALLRVQHAAYAVEAALIQDDRIPPLHED
                     PHDLQRAPLRWLVAVIDDQLSGAVAWIQQT"
BASE COUNT          367 a          665 c          679 g          436 t
ORIGIN      
        1 gacagagacc ccaagaggcg cgcggccgtc cctgtcgggt tccagaagtc ggccgcatcc
       61 gcgacgtggg tgaacaaggc gactcgcgca ccaggatgat cgtgcaccgt gtcgctgcgc
      121 atgctctacc tgatcttcgt ccgggttctc gactggctgt ggtttgttcg gccgacccgc
      181 ggcgtcgaag aatgtcgagc tactcgtctt gcgccacgag attgccgtgc tgcgccgagg
      241 caatcccaag ggcactgtca acttgcggca gctggaatga tcgtcgggtt ggtcgggggt
      301 gaggagaggc tggctggtgg gtatcgaggt gccgtcttac cgagggtttc gctacccgat
      361 aaggatcatc agccattgtg tgtggctctg ctaccgcttc ccgctcagct tccgcgaggt
      421 gcaggagatg atgctgcagc gcggggtcgt ggtctcccac gagacgatcc gcaagggggc
      481 tgttgcgttg cgcggagcgg gtgcaggcga gatcgttaat cgaagttggt cagatcgcca
      541 tgacgagctc atcgaaggca gccaggaccc gtagatttac tgtttcctcg accccaagtt
      601 cgtaatggcc gcagcggatg ttctggatga acgcgtgccc ggcggtgatt acttgtacgc
      661 tgcggagttg tttgagcccg cgcatcgcct gcaatcggga cttcagccgt ccgtgatcgg
      721 cttcaatcga gttgtttccg tattgctcgg tgacatgaca ggcggcaggc gccagctctt
      781 cgagcattgg gaaagggtca ggctgctctg gttggttgcc agggacgccg accgcgggct
      841 ggtgcgagcc ggcgggtcat gagtccgatc atggtccatt tgaccatggc ctcggcatgt
      901 tcggggaggc gttcgtagtc gtggtcgagc cggcggcagc ggaccagcca ggacggcact
      961 gttgcatcct gggatgggag cagcggttgc gatgcttgat gcatgcgcgt cgctcgctgc
     1021 ctcgccccgt ccgttgcgcc ctcggcgttc gccggcttcg cttcccgccg gaggtgatca
     1081 ccttggcggt gcggtggtat ctgcatttcg gtctctctta ccgtgatgtg ggagagctcc
     1141 tagccgagcg aggcatcacg gttgaccacg tcagcatctt ccgctgggtg cagcgcttca
     1201 cgccgctact ggcgcaggcg gcacaccatg ccggcaccgt gtccttgcgc tgatcgcaac
     1261 atccgatgat caagggcgtt ggtcatgacg gtgttcgcga gcgcaagaca gcgaggcatc
     1321 aaccagaccc cacgtcaccg gccagacatc gtcatcttgg cacgacggcg atcgcctcaa
     1381 tttcgatctg ccaggccgga tccgccaacg acgcgacctg agcgatcgtg tccgctggat
     1441 atggcggggt gaaaaactcc cgccgtaact gcacgacccg gtcgatcact gccatgtccg
     1501 tgacgaagat cgtcactttg acgacgtgct ccaacccagt cccagcgttg ccgagcacgg
     1561 tcgccaggtt ggcgaacacc tgccgagcct gtgcatcgaa gtcgtccccg ccaacggtct
     1621 gcccgtgttc gtcgactgcg gcttgaccgg acacgaacac caggtccccc acccggattc
     1681 ccagcgagat cgcataccgc tcgtaccagt ccggctccga gctaatccta tggcgcgtgc
     1741 tgctgatctc catgcctcca ccgtcaccga tatccccgac ttgcacaagc gcacccatcg
     1801 tggtcacgcg gccaccggta acgcgcctcg acgttcaggt gcttatctcg aaggtggatg
     1861 cgattagtgg ggccattggc ttgcgcagca cagacgctag accgtttctg caagcattaa
     1921 ttggtgctga tccgagacgc tgtaccagcc gccgacgcac agcttgcacg tgcgctgttg
     1981 cgggtccagc acgctgctta cgccgtcgag gccgccctga tccaggacga tcggatacct
     2041 cccctgcatg aagaccccca tgatcttcaa cgagcgccac tgcgctggct cgtcgccgtg
     2101 atcgacgatc agctaagcgg agcggtcgcc tggatacagc agactga
//
LOCUS       DASVXZ010000604         1640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1231839, whole genome shotgun sequence.
ACCESSION   DASVXZ010000604 DASVXZ010000000
VERSION     DASVXZ010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231839"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            750..1310
                     /locus_tag="VF788_12695"
     CDS             750..1310
                     /locus_tag="VF788_12695"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX8935022.1"
                     /translation="MTVTDRPVDNGVNVEALLGVRNALADTPEIAQFQWRATCSWVKG
                     THSKSSVDTFYGFGGEQHHKTTFTYDADHPLAFAAEDNGVTPVEYVLVALGSCLTAGV
                     AAVAQQRKIQLRSVDATVEAEMDLHGILGADPEVRNGFSGIKVTYKIDADATPEDVRA
                     LVAQSQKRSAVYDAITNPTHVTVEVA"
     gene            1345..>1640
                     /locus_tag="VF788_12700"
     CDS             1345..>1640
                     /locus_tag="VF788_12700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX8935023.1"
                     /translation="MTTVVIGAGHCGLAMSRCLADRSIDHVILERGEAANSWRTQRWE
                     SLRLLTPNWLTRLPDYSYRGEEPDGYMTAPEVVQLIDEYARVTAAPVRTHTTVTS"
BASE COUNT          299 a          537 c          505 g          299 t
ORIGIN      
        1 agtcgtgcac cgtgccgccg cgctgtcccc ggccgcggcc gcgttcctcg acctcctccc
       61 gctgccgtgt ggtggagggc aggtccaccc aggcgccggg acccgagatc cccatcctcg
      121 attggtaccg gcggcttcgg ctgcgcgtcc gtaaccggcc gatcaacggc aagaaccggc
      181 cgagccaagc cgcgtcatcg tggtaggcgc gctgatgcag ccgtttgagc tgtggttcct
      241 tgagccaccc gcgaccaggt catcgcccac ccactcactc actcactcac tcacccaccc
      301 actcgcgaca tcgagggcga tcgtcgccgc cctacctatc agaattgcct gaatcagcct
      361 tccagtagca gatcgagggg taagagcttc gacggcgcga acacagatcc gaggcgctgg
      421 tccgcaccgc gggggtgtgg taagaacatc gcatggctgg tggcgtgttt ctcgtgcgcc
      481 gtcggcatat tgaccatggt ttggtctgga gttgtgcgtg tccgagtccg cgccgctccc
      541 acccgcccgt caacatcatc ggctgagcat cgagcaggtt ccagcagatt ggcacagaca
      601 aaattcgatg gctgtctagc cgccgaccgc ggctgcgcgg cccggctatg gatcatcggt
      661 aaagtagatt tgcgacgaat cgggcagtct ccgctagccg aacggtgctg gtaatcgtca
      721 gtgacttgat taacccaaag gagtattcca tgaccgtgac tgatcgcccc gtcgacaatg
      781 gtgtcaacgt cgaggctttg ctcggtgtcc gcaacgcctt ggccgacact cccgaaattg
      841 cgcagttcca gtggcgggcg acgtgttcgt gggtcaaggg cacgcacagc aaatccagtg
      901 tggacacgtt ttacggcttc ggaggggaac agcaccataa gacgactttc acctacgacg
      961 ccgatcaccc cttggcgttc gcggccgagg acaacggtgt tacgcccgtc gagtacgtgc
     1021 tcgtcgccct gggcagctgc ctgaccgccg gagtggccgc ggtcgcccag cagcgcaaga
     1081 ttcaattgcg ctcggtggat gccaccgtcg aagcggagat ggaccttcac ggaatcctcg
     1141 gtgccgaccc cgaggtccgc aacggtttca gcgggatcaa ggtcacgtac aagatcgacg
     1201 ctgatgccac tcccgaggac gtcagggccc ttgtcgcgca gtcgcagaag cgctcagccg
     1261 tctatgacgc catcaccaac ccgacccacg tcaccgtcga agtagcctga tccggccctg
     1321 cctgggaggg tgcctgtgtc caaagtgacc accgtcgtca tcggcgctgg ccactgcggg
     1381 ttagccatga gccgttgcct cgccgaccgt tcgatcgacc atgtgatcct cgaacggggc
     1441 gaggcggcga actcctggcg gacgcagcgg tgggagtcgc ttcggctgct gacacccaac
     1501 tggttgactc ggctgccgga ctactcctac cggggtgagg aacccgatgg ttacatgacg
     1561 gcgccggaag tcgtgcaact gatcgacgag tacgccagag tgaccgctgc cccggtgcgg
     1621 acgcatacca cggtcacgtc
//
LOCUS       DASVXZ010000605        11021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_873766, whole genome shotgun sequence.
ACCESSION   DASVXZ010000605 DASVXZ010000000
VERSION     DASVXZ010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 11021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11021
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_873766"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(233..1114)
                     /locus_tag="VF788_12705"
     CDS             complement(233..1114)
                     /locus_tag="VF788_12705"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008974 - phosphoribulokinase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HEX8935024.1"
                     /translation="MSAKHPIIAITGSSGAGTTSVMRTFEQIFRREHVNATLIEGDSF
                     HRYDRTEMKAAVAEALDRGDHSLSHFGPEANLFEELEELFRQYGENGRGRVRKYLHDD
                     EEAADYGQPAGTFTPWSDLPADLDLLFYEGLHGAVATDKVDVAQHVDLLIGVVPVINL
                     EWIQKLQRDKATRGYSTEAVTDTILRRMPDFVNYICPQFSRTHVNFQRVPMVDTSNPF
                     IARTIPTLDESMLIIRFADPRGIDFSYLISMLHDSFMSRANTIVCPGGKMDLAMQLIF
                     TPMIWRLMERRKQALGH"
     gene            complement(1134..2204)
                     /locus_tag="VF788_12710"
     CDS             complement(1134..2204)
                     /locus_tag="VF788_12710"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEX8935025.1"
                     /translation="MLTDRTTLTQFLIEERRRYPGASGELNSLILNVALACKAIAKRV
                     AYGALGGVIGAATTTNVQGEKQQKLDLVANDLFLRANEWGGLVSGMVSEELEAPHPIP
                     ERYPRGKYLLAFDPLDGSSNIDVNVSVGSIFSILRAANPGTKATAEDFLQPGSEQVCA
                     GYAIYGPSTMIVLTVGTGVHGFTLEPQLGEFILTHPAIEVPAAASEFAINASNSRFWE
                     PPVARYVDECLAGSEGPRGKDFNMRWVASLVAETHRILTRGGVFLYPRDTKEPAKQGR
                     LRLLYEANPVAFIVEQAGGLASTGRERVLDVAPQDLHQRIAFIFGAREEVERIEEYHL
                     DDNLVDYDTPLFSTRGLFRTNG"
     gene            2357..3184
                     /locus_tag="VF788_12715"
     CDS             2357..3184
                     /locus_tag="VF788_12715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX8935026.1"
                     /translation="MLTIGLRRLDLVPSVGTVADTVRYELDGHVATITYHRPDKLNVI
                     DQQMRAGLNAAFAAFRDDEDAWVAIITGAGRAFCAGADIHSPGNPAGEFPGTFWERPT
                     VNSFESGWEIYKPVIAAVNGYCLGYGLTLLTWCDFVIASEHAVFGYPEVRIGTPTIVG
                     AIRLPQRIGWQYAMELLLTGEQINAERAKEIGLAGWIVPHSSLLSAARALAERLLAAA
                     PLAARATKEVARRASDMSAVDAIRFGETMRLVANSTQDAAEGRAAVVERRPPVWGGR"
     gene            3235..3630
                     /locus_tag="VF788_12720"
     CDS             3235..3630
                     /locus_tag="VF788_12720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEX8935027.1"
                     /translation="MAEVDKSEKITINVGLVDLGQIDLLVDEGFFANRTDFIRTAIRR
                     QLESRSDAVADTVARRTLTLGVQHLARRDLEELRDTGRMIELRVLGLATIAEDVDAEL
                     ALATIGSVEVLGAFRAPRAVKAALAPRTT"
     gene            3711..4802
                     /locus_tag="VF788_12725"
     CDS             3711..4802
                     /locus_tag="VF788_12725"
                     /inference="COORDINATES: protein motif:HMM:NF021982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HEX8935028.1"
                     /translation="MDHEKNGMAAALRLTREGRLTEAVAVLRRILGGSSGNTKADDAR
                     TRPEQTGAQVISPSAGVAPGLGARPRGPRPKTTTAPSERVLRLSHTEAAGTRRFDLYV
                     PTGWTSKRRALLVMLHGGSQHAADFAAGTRMNELAERHDLLVAYPEQSAKANNGGYWN
                     WFSPAHQRAGEGEPSILAGITRRILAEYDADRDRVYVAGLSAGGAMAAVMAATYPDLY
                     ATVGVHSGVPYRAAHDLRTAFAAMRTGGTQAPGGNLPLIVFHGDRDSVVAPINAERLV
                     AARIAAAGSGTRCSATTARLAEPGGRPCTQTITRDAGGAVVAECWMVHGAGHAWSGGD
                     PAGSYTDPHGPDASAEMVRFFLEHPRRQR"
     gene            complement(4843..6237)
                     /locus_tag="VF788_12730"
     CDS             complement(4843..6237)
                     /locus_tag="VF788_12730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX8935029.1"
                     /translation="MHPLADPIASGLGLTLQELMTIPASKPNPPPSSGDTLDRWARIS
                     YLGEVPDGSGRLFVPDLNGKMYLIKDGTPQIYLDVAAEFAPYFMNTKSLTSGFVFVAF
                     DPEYGKNGIFYTVHTEEGPALNPKAPQPKVPDLPYPQDSPAQGVVTEWKAADPTASTF
                     RGTRREVLRLGFADTIHGIQQIGFNPTSRPGDKDYGLLYISAGDGGVVGEESPGKVTT
                     VPQDLRVPQGKILRIDPHGTNGANGNYGIPVNNPFVGKPGMALREIYASGLRDPVRFS
                     WDPGESHRMFLANIGEQEIESIYEVRPGDNFGWSQREGPFAFRAGDPSCGVFSLPADD
                     SKYGYTYPVVAFAHNPPPGQPPCRTSGHAVVGGFVYRGASVPELRGKYLFADFVPGRI
                     FYADSREMHAGGNLARIYELSVFNDKNQPVTMQQLAGNSRTDLRFGTDSHGELYLLAK
                     ANGKIWKIIGTHRS"
     gene            complement(6415..6717)
                     /locus_tag="VF788_12735"
     CDS             complement(6415..6717)
                     /locus_tag="VF788_12735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935030.1"
                     /translation="MLVDDARRIAAAIEERLNAGASQGLKATVRADENRPTSVPAGAG
                     RPTFISYFIEIADGTRMASLTLGQAAGLLEDVKPDWDPDRLFDAIRAMDVSVEETP"
     gene            complement(6987..7530)
                     /locus_tag="VF788_12740"
                     /pseudo
     CDS             complement(6987..7530)
                     /locus_tag="VF788_12740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224567.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
     gene            complement(7673..8770)
                     /gene="sbnB"
                     /locus_tag="VF788_12745"
     CDS             complement(7673..8770)
                     /gene="sbnB"
                     /locus_tag="VF788_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnB"
                     /protein_id="HEX8935031.1"
                     /translation="MTTIDSTTAESTKSQPRTVPPFAVISGAQVQHALRGRENQIMRL
                     VEATYRLHGAGDSVNPPSYFLRFPDRPSSRIIALPASIGGQVRVDGLKWISSFPENVA
                     AGIPRASAVLILNDHDTGYPFACLECSIISATRTAASAALAADWLSRGRPRPTRVGFF
                     GVGLIARYIHTFLARTGWSFDEIGVHDLSADSTAGFCAYLRDYPKDGQLEQPGTAGRI
                     TVHERAEQLIRSSDLVVFATVAGQPHVSELSWFEHNPLVLHVSLRDLAPEILLASTNI
                     VDDIEHCMKANTSPHLAEQLTGNRDFLHGTLDDVMAGRVTVPADQPVVFSPFGLGVLD
                     LVVGKYVYDEVGRCDELHVVDDFFHELRRYG"
     gene            complement(8767..9771)
                     /locus_tag="VF788_12750"
     CDS             complement(8767..9771)
                     /locus_tag="VF788_12750"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX8935032.1"
                     /translation="MSSSSLASLFNVELQPGKPPMLRADAPGDAPSWAAEHRDALRTV
                     VAEHGSVLVRGLGLREPAEVGAMFAQLATGLMSEREAFASRRIYSEGVYSSSKWPANQ
                     PMCMHHELSYTLEYPGLMLFACLRAPIDGGATAVADSPTVLDALPTELIERFKREGWL
                     LTRNYNDEIGASFAEAFGTADRGAVESYCRANAIDFQWQPDGGLRTRQRRSAVVRHPV
                     TGARCWFNQIAFLNEWTIDPEVREFLVDVYGADGLPFNTRFGNGDPIGEDIVQLLNSV
                     YEANTAREPWQAGDLMLVDNVRTAHSREPFEGPREVLVAMADPVRLADCSPTVEVTAR
                     "
     gene            complement(9815..>11021)
                     /locus_tag="VF788_12755"
     CDS             complement(9815..>11021)
                     /locus_tag="VF788_12755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="non-ribosomal peptide synthetase"
                     /protein_id="HEX8935033.1"
                     /translation="SALLVGGRTLLVEQEVILDVQRFIDKIVEGRVAVLQVVPSYLEV
                     VLSYMERNPRQLPDLRCVSVTGEALKKELTQRWFATEPEIKLVNAYGLTETSDDTNHE
                     VMDRVPDLERVPLGRPVNNVHVYVVDEHLSPVPLGAPGLIAFSGVCVGRGYVNDPERT
                     RAAYLDDPHRQGQRLYLGGDYGRWQPDGKLEFLGRRDSQVKIRGFRIEIGEIENTLLQ
                     VPGLRDGAVVVAERADQSKHLVAFYSSQWPLEVDVLRDRLGESLPEYMVPSAFHWRRS
                     LPLTANSKIDRKTLTALALDSSDVTEQDYDAPSTPTEQWLAASWAKVLGIPADQIGRR
                     DHFFDRGGTSLSAVKLAITLDRAVSLKDVTRHPILADLAGLVEDRSTRRSGLLQSLPG
                     SDAALLASS"
BASE COUNT         1914 a         3612 c         3588 g         1907 t
ORIGIN      
        1 gcgctaccgg tccggcatgt cgctctgcga caagaatgat cgtcgtcatc gccggcggcg
       61 ccagcttccg catggcggag ggcgtcacgc agctcatcgg cgctaccgcg cccgcgcacc
      121 gccgcggggt gtccagaccg cgctgctggt gatgcaggcc tgagcccgcg gtgggcggcc
      181 aacttgttcc cggcagctcc cgccagaagc gaaaggcgtc gagcggaacc ctctaatgcc
      241 ctagcgcctg cttgcgccgc tccatcagcc gccagatcat cggcgtgaag atgagctgca
      301 tcgccagatc catcttgccg ccggggcaca cgatggtgtt cgcgcgcgac atgaacgagt
      361 cgtgcagcat cgagatgaga tacgagaagt cgatgccgcg cggatcggcg aatcggatga
      421 tgagcatcga ctcatccagc gtcggaatcg tccgggcgat gaacggattt gatgtgtcga
      481 ccatcggcac gcgctggaag ttgacatgag tgcgcgagaa ctgtgggcag atgtagttca
      541 cgaagtcggg catgcgacgc agaatcgtgt cggtcaccgc ttcggtggaa tagcctcgcg
      601 tcgctttatc gcgttgcagc ttctggatcc actccaagtt gatcaccgga acgacgccga
      661 tcagcagatc cacgtgctgg gcgacgtcaa ctttgtcggt cgcaaccgct ccgtgtaacc
      721 cttcgtagaa cagcagatcc aagtcggcgg gtaggtcgct ccagggtgtg aacgtaccgg
      781 cgggctgccc gtagtccgcc gcctcctcgt catcgtgcag gtacttgcgc acgcggccgc
      841 gaccgttctc gccgtactgc cggaagagct cctcgagctc ctcgaagagg ttcgcctccg
      901 ggccgaagtg gctgagactg tggtcaccgc gatccaacgc ctcggccacc gcggccttca
      961 tctcagtgcg gtcgtagcgg tggaagctgt cgccctcgat gagcgtcgcg ttcacgtgct
     1021 cccgccggaa gatctgttcg aaggtacgca tcaccgatgt cgtcccggcg cctgaagaac
     1081 cggtgatggc gatgatcgga tgcttggctg acataacctt ctcccccagt cgctcaaccg
     1141 ttggtgcgga acaggccgcg cgtactgaac agcggtgtgt cgtagtcgac caggttatcg
     1201 tcgaggtggt attcctcgat gcgctcgacc tcttcccgcg caccgaagat gaacgcgatg
     1261 cgctgatgca ggtcctgcgg ggcgacgtcg agaactcgct cgcgcccggt gctcgccagg
     1321 ccgcccgcct gttcaacgat gaaggccacc ggattggcct cataaagcaa gcgcagccgg
     1381 ccttgtttcg ccggctcctt cgtgtcgcgc ggatagagga acacgccgcc gcgggtgagg
     1441 atgcggtgcg tttccgcgac aagtgaggcg acccatcgca tgttgaagtc cttgccgcga
     1501 gggccctcgc taccggcgag gcactcatcg acgtagcgcg ccactggcgg ctcccagaat
     1561 ctgctgttcg aggcgttgat cgcgaactcg ctcgcggcag ccggaacctc gatagccgga
     1621 tgggtgagga tgaactcgcc gagttgcggc tcaagtgtga agccgtgcac acccgtaccg
     1681 acagtcagga cgatcatcgt cgaaggaccg tagatcgcgt atccggcgca gacctgctcc
     1741 gacccgggct gcaaaaaatc ttccgcagtt gccttcgtgc ccggattagc cgcccgcagg
     1801 atcgagaaga tgctgccgac ggagacgttg acgtcgatgt tcgacgaacc gtcgagcgga
     1861 tcgaacgcca ggaggtactt gccccgtggg tagcgctccg ggatgggatg cggcgcctca
     1921 agctcctcgg acaccatccc ggagaccagg ccgccccatt cattggcgcg caggaacaga
     1981 tcgttcgcga ccaggtccag tttctgctgc ttctcccctt gtacgttggt cgtcgtcgcc
     2041 gctccgatca caccgccgag cgcaccgtag gccacccgct tggcgatcgc cttacacgcg
     2101 agcgcgacat tgagaatgag cgagttcagc tccccactcg cgcccggata gcggcgtcgc
     2161 tcttcgatga ggaactgtgt gagcgtcgta cggtcagtga gcatcgcgtc cttcagatcc
     2221 ctggtgtacg cagcctagag cctggatccg ggtagccgta ccggcgggac gggcaaatct
     2281 ttgggaatcc gcattcggtg cctggttgac actggcgaca cccttgcccc ccagccgccc
     2341 tccagtgacc gcagacatgt taacgatcgg gctgcggcga ctcgacctcg tccctagtgt
     2401 gggcactgtg gctgacacgg tgcgttacga gctggacgga cacgtcgcga cgatcactta
     2461 tcacagaccg gacaagctca acgtcatcga ccaacagatg cgcgcggggc tcaacgccgc
     2521 gttcgctgcg ttccgggacg acgaggacgc ctgggtggcg atcatcaccg gcgcaggtcg
     2581 ggctttctgc gccggggcgg acatccattc cccgggcaat cccgctggcg agttcccagg
     2641 cacgttctgg gaaagaccga ccgtcaattc cttcgagagc ggctgggaga tttataagcc
     2701 tgtgatcgcc gcggtgaacg ggtactgcct gggctatggg ttgaccctgc tcacctggtg
     2761 cgacttcgtc atcgccagtg agcatgccgt cttcggctat ccggaggtgc gcatcggcac
     2821 ccccacgatc gtcggcgcca tccggctgcc gcagcggatc ggctggcaat acgccatgga
     2881 actgctgctc accggcgagc agatcaacgc tgagcgggcc aaggaaatcg ggctcgccgg
     2941 ctggatcgtg ccacactcat cgctgctctc cgccgcacgg gcgttagccg agcggctgct
     3001 cgccgccgcg cccctggccg cccgggccac caaggaggtg gctcgccggg ccagcgacat
     3061 gtccgctgtg gatgcgatcc gcttcggcga gacgatgcgg ttggtggcca atagcaccca
     3121 ggatgccgcc gaaggccgag ccgccgtcgt ggagcgccgg ccgccggtat ggggtggccg
     3181 ctaatcgact atccatccct tgtccatccg ccgagatggt gaaacgctgg tgtagtggct
     3241 gaggtcgaca agagcgagaa gatcacgatc aacgtgggac tcgtcgacct cgggcagatt
     3301 gacctgctcg tcgacgaggg gttcttcgcc aaccgcacgg acttcatccg tacggcgatc
     3361 cggcggcaac tggaaagccg gtccgatgcc gtggcggata ccgtcgcccg gcgaacgctg
     3421 accctcggcg tgcaacacct cgcccggcgc gacctcgaag agctccgtga taccggccgc
     3481 atgatcgagc tgcgcgtcct agggctcgcc accatcgccg aggatgtcga cgccgagctc
     3541 gcgctcgcga caatcggatc ggtggaggtt ctgggggcgt tccgcgcgcc gcgggccgtc
     3601 aaggcggcgc tcgccccgcg caccacctga ccaggggcac gcgtaccaag ccggccgtca
     3661 gcctacgacg gtcgacggcc ggtgccgcat ccgacggggg aggactcgtc atggaccacg
     3721 agaaaaacgg catggccgcg gcattacgtc tcacccgcga ggggcgattg acggaggcag
     3781 tcgccgtgct gcggcgcatc ctgggcggct cttccggtaa cacgaaggct gatgacgccc
     3841 gaactcgtcc ggaacagacc ggggcacagg taatctcgcc ctccgctggt gtcgcgcccg
     3901 ggctcggagc gcggccacgt ggtccacgcc ccaaaacgac caccgcgccc agcgaacgcg
     3961 tcctgcggct gagccacacc gaagcggcag gtacccgccg cttcgacctc tacgtcccga
     4021 ccggctggac cagcaagcgg cgagcactcc tcgtcatgct gcacggcggc tcccagcacg
     4081 ccgcggactt cgcggccggc acccggatga acgagctcgc cgagcgacac gacctcctag
     4141 tggcctaccc ggagcagtcg gcgaaggcca acaacggcgg ctactggaac tggttctccc
     4201 ccgcccacca gcgcgccggg gagggcgagc catccattct ggccggcatc acccgacgga
     4261 tcctcgccga gtacgacgcc gaccgggacc gggtttacgt cgccggtctg tcggcgggcg
     4321 gcgcgatggc cgccgtgatg gccgcgacct acccagacct ctacgccacc gtcggggtgc
     4381 actcgggcgt cccctaccgc gccgcccacg acctgagaac cgccttcgcc gcgatgcgca
     4441 ccggcggcac tcaggcgccg ggcggaaacc tgccactgat cgtcttccac ggcgaccgtg
     4501 attccgtcgt agccccgatc aacgccgagc gcctggtcgc cgcccgcatc gctgctgcgg
     4561 gttcgggaac ccggtgttcg gcgaccacgg cccggctcgc cgagcccggc ggccggccgt
     4621 gcacgcagac gataactcgg gacgccggcg gcgcggtagt ggcggaatgc tggatggtcc
     4681 acggagcagg ccacgcgtgg tccggcggcg acccggctgg gtcctacacc gacccgcacg
     4741 gccccgacgc gtccgcggag atggtgcgtt tcttcctcga gcatccgcgg cgccaacgct
     4801 gagttccggg tcccggcaca tcggacccaa cccggttggc ctctatgacc ggtgcgtacc
     4861 gatgatcttc cagattttac cgttcgcctt ggcaagcagg tagagttcac catggctatc
     4921 ggtaccgaac cgtaaatcgg tccgggagtt gcctgccagt tgttgcatgg tgactggctg
     4981 attcttgtcg ttgaagacgg acagttcata gattctggcc aagttaccgc ctgcatgcat
     5041 ctctcggctg tcggcgtaga agatgcgacc cggcacgaag tcggcgaaca gatacttgcc
     5101 gcgcaactca ggcacgctgg caccccggta gacgaaaccg ccaaccactg catgtccgct
     5161 ggtccggcac ggcggctggc ccggcggagg gttatgcgcg aaggcgacca cggggtatgt
     5221 gtagccgtac ttgctgtcat cggcaggcag ggagaagacc ccgcaggagg ggtcgccagc
     5281 cctgaatgcg aacgggccct cccgttggct ccacccgaag ttgtctccgg ggcgcacctc
     5341 atagatcgat tcgatttcct gctcgccgat attcgccagg aacatccggt gactctcgcc
     5401 gggatcccaa ctgaagcgga cgggatcgcg tagaccggac gcatagattt ccctaagggc
     5461 cattcccggc tttcccacaa agggattgtt caccgggatc ccgtagtttc cgttggcacc
     5521 gttcgtgccg tgagggtcta tgcgcaggat ttttccctgc ggaactcgca ggtcctgggg
     5581 aaccgtggtg accttgcctg ggctctcctc accgaccacg cccccgtcgc cggccgagat
     5641 atagagcagc ccgtagtcct tgtctccggg gcgtgaggtg gggttgaagc cgatctgttg
     5701 gattccatgt atggtatcgg cgaatccgag cctgagcact tctcgtcgcg tcccacggaa
     5761 ggtactcgcg gttggatcag ctgccttcca ctcagtcact actccctgag cgggcgagtc
     5821 ttgtgggtag ggcagatcgg gaacttttgg ctgcggcgcc ttcgggttga gtgccgggcc
     5881 ttcttcggtg tggacagtgt aaaagatacc gttctttccg tactcaggat cgaaggctac
     5941 gaacacaaat ccgctcgtga gactcttggt gttcatgaag tacggcgcga actcggcggc
     6001 aacgtcgaga tagatttgcg gtgtaccgtc tttgatcaga tacatcttgc cattgagatc
     6061 aggcacgaac aggcgccccg aaccgtcagg gacctcgccg aggtaactga tccgagccca
     6121 acggtccagc gtgtcaccac tcgatggtgg cgggttcggt ttcgacgccg ggattgtcat
     6181 caattcctga agagtcagac ccagaccgga tgcgatcggg tccgcgagcg gatgcacaag
     6241 cggaccggcc ggcgccggtg acgccgaaca cgccgatgcc accagaaccg caacaaaaat
     6301 cgctacgaca gcgagaccgc gccttgatcg tcggggcatg aggcgggatc atagcgaatc
     6361 cacgaatcac tgatcgtcgg ggatgtgtcg agaccgatta ctccgtcacc ggcctcaggg
     6421 tgtctcctca acagagacgt ccatagcgcg gatcgcatca aagagccgat ccgggtccca
     6481 gtccggcttg acatcctcga gcaatccggc tgcctggccg agtgtgaggg aagccatccg
     6541 ggtgccgtcc gcgatctcga tgaagtagct gatgaaggtc ggacgcccag cgccggccgg
     6601 aaccgatgtg ggtctattct cgtccgccct gaccgtggcc ttgagcccct ggctggcgcc
     6661 ggcgttgagg cgttcttcga tcgcggcggc aattctgcgg gcatcgtcta caagcatcga
     6721 actatctcct tcgcgggggt cgcctccggc acgccgtaga tacctattca ccctgccggt
     6781 tcgcagccat tccgttccgt cattcccacc cgaccgagca cgccgatgcc cctcggcccg
     6841 tcgctccgga gtggcacgct ctgtgcggtg tgccactgca ggttaggacc ctcgggtaac
     6901 tgccactcgg gtatcccgcg aagctagacc ccgccagcga acacgtccag tgcccgaatc
     6961 tagtttgtgg cgtcaagcgc ggcgacctag taggcctctg agagcgtagg ataattgaac
     7021 acggtgtcga cgaggtagtc gacggtgccg ccgcagccca tgatggcttg cccgatgtgc
     7081 acgaggtcgg tggcgttcgt tccgaatacg tggacgccca gcagggtgcg atcctcggtg
     7141 gagaccgctt cagcatcccg taggagtcac cgacggtcgc gcctcgggcg agcttacggt
     7201 agcgggacat ccctacctcg tagggcacgg ccgactgtgt caactcggct tccgtccggc
     7261 cgcagtaaga gatctccggc acggtgtgaa ccccgatcgg ctgcagttct tgcagctcgt
     7321 gggcgggttc accgaacgcg tgatacgccg cgagccgccc ctggttcatg gacgtgactg
     7381 cgggcgccgg aaagccgacc acgtcaccga ccgcgaagat gtgcgcaacc gcagtgcggt
     7441 gctgccgatc cacggtgatc cgcccgcgcc ggtcggcggc gagggcgcct tctccgggtc
     7501 gagttcgtcg gtgacgcctt gacggcccgc gagtacatca ctgcccgccg gatcgcaatg
     7561 gctgccttcc accagccagc gtcgccggcc cgggtcacac cgggcaaacc gggaggttaa
     7621 cagtgcgcga cgccgtcccg cctcgttttc gccgatggac gcactgagcc gctcatccgt
     7681 accggcgcag ctcgtggaag aagtcgtcga cgacgtgcaa ttcgtcgcag cggcccacct
     7741 cgtcgtagac gtacttgccc accaccagat cgagcactcc aaggccgaag ggcgagaaca
     7801 ccacaggttg gtcggcgggc accgtcaccc gtccggccat cacatcgtcc aacgtgccgt
     7861 gcaggaagtc ccggttgccc gtgagctgct cggccagatg cggcgaggtg ttggccttca
     7921 tgcagtgctc gatgtcgtca acgatgttgg tcgaggcgag caggatctcc ggcgcgaggt
     7981 cgcgcagcga cacatgcagc accaacggat tgtgttcgaa ccaggacagc tcgctgacat
     8041 gcggctgacc ggcgacggtg gcgaagacca ccaggtcgct ggagcggatc aactgctcgg
     8101 cgcgctcatg cacagtaatg cggccggcag tgcccggctg ttcgagctgg ccatccttcg
     8161 ggtagtccct cagatatgcg cagaagcccg ccgtgctgtc ggcggacagg tcgtgcacac
     8221 cgatctcgtc gaacgaccag ccggtgcggg ccaggaaggt gtggatgtaa cgggcgatca
     8281 ggcccacccc gaaaaacccg acgcgcgtcg ggcgcggtcg gccacggctg agccagtcag
     8341 ccgccaacgc cgccgacgcg gccgtcctag tggcgctgat gatcgagcat tccaggcagg
     8401 cgaacgggta gccggtgtcg tggtcgttga ggatcagcac ggccgaggcc ctcgggatgc
     8461 cggccgccac gttctccggg aagctggaga tccacttcag gccatccacc cgcacctgcc
     8521 cgccgatcga ggcgggcagg gcgatgatcc gggaggacgg gcggtcggga aaacgcagga
     8581 agtaggacgg tgggttcacc gaatcaccgg cgccgtgcaa ccgataggtg gcctcgacca
     8641 acctcataat ctggttctcc cggcctcgca gcgcgtgctg cacctgggca ccggagatca
     8701 ccgcgaacgg cggcacggta cgcggttggg acttggtgga ctccgctgtg gtggaatcga
     8761 tggtggtcat cgggcggtca cctcgacggt cggcgagcag tcggccaggc gcaccgggtc
     8821 ggccatcgcg acgagcactt cgcgcggtcc ctcgaagggc tccctgctgt gcgcggtgcg
     8881 gacgttgtcg acgagcatca ggtcgccagc ctgccacggc tcgcgtgcgg tgttggcctc
     8941 gtaaacgctg ttaagtagct gcacgatgtc ctcgccgatc gggtcaccgt tgccgaaacg
     9001 ggtattgaac ggcagcccgt cggcgccgta gacgtccacc aggaactcgc gcacctcagg
     9061 atcgatcgtc cattcgttga ggaatgcgat ctggttgaac cagcagcgcg ccccggtgac
     9121 cggatgacgt accacagcgc tgcggcgctg cctggtgcgc agcccaccgt cgggttgcca
     9181 ctggaagtcg atcgcgttgg cgcggcagta gctctcgacg gcaccacggt ctgcggtgcc
     9241 gaacgcctca gcgaaggacg ccccgatctc gtcgttgtag ttgcgggtga gcaaccagcc
     9301 ctcccgcttg aaccgctcga tcaactcggt gggcagcgcg tcgagcacgg tgggcgagtc
     9361 ggccaccgcg gtcgccccgc cgtcgatggg tgcgcgcagg cacgcgaaga gcatcaggcc
     9421 tggatactcc agcgtgtagc tcagttcgtg gtgcatgcac atcggctggt tggccggcca
     9481 cttcgatgag gagtacacgc cttctgagta gatccgccgt gacgcgaagg cctccctctc
     9541 ggacatcaga ccggtagcca gctgcgcaaa catcgcaccg acctcggccg gttcgcgcag
     9601 cccgagtccg cggaccagga ccgacccgtg ctcggcaacg acggtgcgca gcgcgtcccg
     9661 gtgctcggcc gcccagcttg gcgcatcgcc gggggcatcc gcccgcagca tcggaggttt
     9721 gccgggttgc aactccacgt tgaacaggga ggccagggat gaggacgaca tggtgatttc
     9781 ctttcagtgc tcgttgttgg tcgaaggagg ccaatcaaga agaggccaac aatgcggcgt
     9841 ctgatcccgg cagcgactgc agcagcccgg agcgccgcgt ggacctgtcc tcgaccagcc
     9901 cggccagatc ggcgaggatc ggatgacggg tgacgtcctt gagcgacacc gcacgatcca
     9961 gggtgatcgc cagtttcacc gccgacagcg acgtgccacc ccggtcgaag aaatggtccc
    10021 gccggccgat ctggtcggcc gggatgccga gcaccttcgc ccatgacgcc gccagccatt
    10081 gctcggtcgg cgtgctcggc gcgtcgtagt cctgctcagt gacgtcactg ctgtcgaggg
    10141 cgagcgctgt cagcgtcttc ctatcaatct tgctgttggc ggtcagcggt agactccttc
    10201 gccagtggaa ggctgacgga accatgtact cgggcagcga ttcacccagc cggtctcgga
    10261 gcacgtcgac ttcaagtggc cactggctgg agtaaaaagc caccaggtgc ttgctctggt
    10321 cggcccgctc ggcgaccacc acggcgccgt cgcggagacc gggcacttgc agcagggtgt
    10381 tctcgatctc gccgatctcg atccggaagc cacggatttt cacctggcta tcccggcggc
    10441 cgaggaactc cagcttgccg tcgggctgcc agcggccgta gtcgccaccg aggtagagcc
    10501 gctggccctg gcggtgcgga tcgtcgaggt aggccgcccg ggtgcgttcg gggtcgttga
    10561 cgtacccgcg gcccacgcag actccggaga aggcgatcaa gccgggagcg ccgagcggca
    10621 ccggtgacag gtgttcgtcg acgacgtaga cgtggacgtt gttgacgggg cggccgagcg
    10681 gaacccgttc gaggtccggc actcgatcca tgacctcgtg gttggtgtcg tcggaggtct
    10741 cggtcagccc ataggcattg accagcttga tctcgggctc ggtcgcgaac cagcgctgcg
    10801 tgagctcctt tttcagcgcc tccccggtca ccgacacgca ccgcaagtcc ggcagctggc
    10861 ggggattccg ctccatatag gacagcacaa cttcgaggta agacggcacg acctggagca
    10921 cggcgacccg gccttcaacg atcttgtcga tgaaccgctg gacatccagg atcacctcct
    10981 gctcaaccag gagcgtccgc ccaccgacca ggagcgcgga a
//
LOCUS       DASVXZ010000606         4170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1019066, whole genome shotgun sequence.
ACCESSION   DASVXZ010000606 DASVXZ010000000
VERSION     DASVXZ010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019066"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4131)
                     /locus_tag="VF788_12760"
     CDS             complement(<1..4131)
                     /locus_tag="VF788_12760"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8935034.1"
                     /translation="MAELRAHTAQALPDYMVPALFVTLEELPLGPTGKLDRKALPAPD
                     QLTQPVGEYVAPRSATEQTLAEIWAQVLHAERVGIHDNFFELGGDSILSVQVMSRVRV
                     AFGVELSPRMLFVNPTVAAMAVAVAESVVADSPPITVVDRVGELPLSFAQQRLWFLDQ
                     FSPGGSGYVSAFAVRLCGDLDLAALSDALNGLVARHESLRTAFQTVEGRGVQVIHPPG
                     PVPLPVWDLAGLPASERDQELLRVAAEETSRGFDLACGLLVRVGVVRLDSAEHVLTVA
                     MHHIVTDGWSLGVFMAELGTFYNAAVAGESPQLAALPVQYVDYAVWQRELLTGAVLDN
                     ALGYWREQLAGVAPLELPTDRLRPAVLTSAGAVHQFVVPAPVVAGLTALGRRLDGTLF
                     MTLVAACQVLFARWSGQEDIAVGTAVSGRDRTELEGLIGFFVNTLVLRSRVRNKQSFV
                     QFLVGVRETVLDALVHQQVPFERLVDELAPARDTSRTPLFQAMVLLQNTPGHTTELTG
                     LDVSGVELPTTSAQFELTAQFHTVQVPGGDVLAGMFHYNTDLFDAATIERMTVHLLML
                     LEGIAADPDRPVSELPLLTIAERDRLLVDWNDTQQPVPDVTLPELFAAQVARTPDAVA
                     VVGESVSLSYAELDERSSRLARVLIARGVGPEHFVGLALPRSVDMIVPLLAVAKAGAA
                     YLPIDLNHPPARIGFICADAEPVVVLCTQHSAACLPGDVARLVIDDPQVLREITSCSG
                     GEVRDIERVAPLAVTHPAYAIYTSGSTGQPKAVVVTHRSVVDLVGWAAAEFGVSGLSR
                     VLASTSLNFDVSVFEIFCPLLVGGSIEVVRDVLALSEPGAGERVASLVSGVPSALSQG
                     LALGGVVRADTVVLAGETLSALAAQQIQAATSCRRIANIYGPTEATVYATAWYSELPV
                     DQSPPIGRPISNTQVYVLDAQLRPVPIGVIGELYLAGAGLARGYLHRPGLTAARFVAH
                     PFGAPGERMYRTGDLARWTPNGELEYLGRCDDQVKIRGFRIELGEVESALQAHPAVAQ
                     AVVVANEDQSGTKRLVGYLVPVTDVASGAQAAPTVAELRAHTAQTLPDYMVPAMFVML
                     AELPLNANGKVNRKALPAPDRSAVPAPEYVAPRTATEQTLADIWGEVLGVEPVGVQSN
                     FFELGGDSILSIQLVFRTRKAGFMMNFRDVFVNQTVAELALVVTAAHSERADREPVIG
                     STPLTPIQQWFFRTHPVNPHHFNHSRLVEMGADVDHSNLERALEVLLVHHDALRMRFD
                     FVDGQWRQHNDPPKPARVLRVVDLSDRTGEERAVTMENVVNEIHASFDLREGPLLKAA
                     LFTFGAGRPSYLFLAAHHLVIDAASWRILLEDLDTTYRRMAHGEDLQLEAKTTSFQD"
BASE COUNT          817 a         1484 c         1236 g          633 t
ORIGIN      
        1 gtcctggaag gacgtcgtct tggcctccaa ctggagatcc tcaccgtgag ccatccgccg
       61 gtaggtcgtg tcgaggtcct cgagcaggat gcgccaggag gcggcgtcaa tcaccaggtg
      121 gtgtgcggcg aggaacaagt agctgggccg acccgcaccg aaggtgaaca gtgccgcctt
      181 cagcagcgga ccctcccgga gatcgaagct tgcgtgaatc tcgttgacga cgttctccat
      241 cgtcactgcc cgctcctcgc cggtccgatc cgacagatcg acgacacgga gcactctcgc
      301 cggtttaggc gggtcgttat gctgccgcca ctgtccgtcg acgaaatcga atcgcatgcg
      361 cagcgcatca tgatgcacca ggagcacctc aagcgcccgc tcaagattcg aatgatccac
      421 gtctgcgccc atttcgacca acctggaatg gttgaaatgg tgcggattga ccggatgcgt
      481 tcggaagaac cactgctgga tcggggtgag cggggtcgaa ccgatgaccg gttcccggtc
      541 ggcgcgctca ctgtgcgccg cggtgaccac caaggcgagc tcggcgacgg tttggttgac
      601 gaagacgtcc ctgaagttca tcatgaaccc ggccttgcgg gtccggaaaa cgagctggat
      661 gctcaggatc gagtcgccac cgagttcgaa gaaattgctc tgcacaccga ccggttccac
      721 tcccagaacc tcaccccaga tatcggctag ggtctgctcg gtcgcggtgc gcggcgcgac
      781 atactccggc gccggcacag cggagcggtc cggggccggc aacgccttcc ggttcacctt
      841 cccattcgcg ttcaagggta attccgccaa catcacgaac atcgccggca ccatgtaatc
      901 cggcaacgtc tgagcggtgt gggcgcgcag ctccgcaacg gtgggtgctg cctgagcacc
      961 cgatgcgacg tcggtgaccg gtaccaggta acccactagc cgtttcgtcc cagactggtc
     1021 ctcgttagcc accactaccg cctgggccac tgccggatga gcctgcaacg ccgactcgac
     1081 ctcgcccagt tcgatgcgga agccgcggat cttgacctgg tcgtcacagc ggcccagata
     1141 ctccaactcc ccgttgggag tccagcgggc caggtccccg gtgcggtaca tccgctcacc
     1201 cggtgcaccg aaggggtgcg ccacaaaccg ggccgcagtc agcccggggc ggtgcagata
     1261 gccgcgggcc agcccggctc cagcaaggta gagctccccg attaccccga tcggcaccgg
     1321 cctcagctgg gcatcgagca catacacctg ggtattgctg atcggccgcc cgatcggcgg
     1381 tgactgatcc accggcagct cggagtacca cgcggtggca tacaccgtgg cctcggtcgg
     1441 accatagata ttcgcgatcc gccggcacga ggtcgccgcc tggatctgct gagctgccag
     1501 ggccgagagc gtctccccgg ccagcaccac cgtgtccgcc cggaccacac cacccagcgc
     1561 caaaccttgc gacagcgccg agggcacccc gctgaccaga ctcgccaccc gctcaccagc
     1621 gccgggctca ctcagcgcca gcacgtcccg gaccacctcg atactgccgc ccaccagcaa
     1681 cggacagaag atctcgaaca ccgacacatc gaaattcagc gacgtcgagg ccagcaccct
     1741 cgacaacccc gacacaccga actccgccgc ggcccacccc accagatcaa ccacactccg
     1801 atgagtgacc accacagcct taggctgccc ggtggatccc gaggtgtaga tcgcatacgc
     1861 cgggtgggtc acggccagtg gtgcgactct ttcgatatcc ctcacttcgc cgccggaaca
     1921 gctggtgatc tccctcaaca cctgaggatc atcgatcacg agccgggcca catcccccgg
     1981 caggcacgcc gcgctgtgct gggtgcacag caccacaacc ggctcggcgt cagcacagat
     2041 gaaaccgatc cgcgccggcg ggtgattcag atcgatcggg agatacgccg caccggcctt
     2101 ggcgaccgcg agtaacggca cgatcatgtc caccgaccga ggcagggcaa gtcccacgaa
     2161 gtgctccgga cccacccctc tggcgatcag tacccgcgcc agccggctgg accgttcatc
     2221 cagctccgca tacgacagac tgaccgattc gcccaccacc gccacggcat ccggcgtccg
     2281 cgccacctgc gcggcgaaca actccggcag cgtcacgtcc ggcaccggtt gctgggtgtc
     2341 attccaatcc accagcagcc gatcccgctc ggcgatggtc aacaacggca actcactcac
     2401 cggtcgatcc ggatcagccg cgatcccctc cagcaacatc agcagatgca cggtcattcg
     2461 ttcgatggtg gccgcgtcaa acaaatcggt gttgtagtgg aacatgccgg caagcacgtc
     2521 accgccaggc acttgcacag tatggaattg tgcggtgagt tcgaattgcg cactggttgt
     2581 cgggagttcc accccggaga cgtccaaccc ggtcagctcc gtggtgtgtc cgggggtgtt
     2641 ctgcagcagg accatcgctt ggaacaacgg cgtgcggctg gtgtcccggg ccggggcgag
     2701 ttcatcgacg agtcgttcga agggcacctg ctggtggacg agggcatcca gcactgtctc
     2761 ccgcacgccg accaggaatt gcacaaagct ctgcttgttg cgcactcgag agcgcagcac
     2821 cagggtattg acgaaaaatc cgatcaatcc ttccaattcg gtgcgatccc ggccggagac
     2881 ggcggtgccc accgcgatgt cctcctgtcc ggaccagcgg gcgaacaaca cctggcaagc
     2941 cgccaccaac gtcatgaaca aggtgccgtc cagacgccgg cccaacgccg tcaaccccgc
     3001 gacaaccggg gcgggcacca cgaactggtg gaccgcgcca gcagaagtga gcaccgctgg
     3061 tcggagccgg tcggtgggta actccaacgg agcgaccccg gccagctgct ctcgccagta
     3121 cccaagagcg ttgtccaaca cagcaccggt aagcagctcc cgctgccaca ccgcgtagtc
     3181 gacgtactgc accggcaatg ccgcaagctg cggcgactcc ccggcgaccg cggcgttgta
     3241 gaacgttccc aattcggcca tgaacacacc cagcgaccaa ccgtcggtca cgatgtgatg
     3301 cattgccaca gtcagcacat gctccgcgga gtccaggcgc accacgccta ctcgcaccag
     3361 cagcccacag gccaggtcaa agccgcggct ggtctcctcc gcggcgaccc gcagcaactc
     3421 ctgatcccgc tcagacgcgg gcaaccccgc cagatcccac accggcagcg gtaccggccc
     3481 cggagggtgg atcacctgta ccccgcggcc ctcgaccgtc tggaatgcgg tccgtaacga
     3541 ctcgtgccga gccaccaacc cgttgagcgc gtccgagagc gcagccagat cgaggtcacc
     3601 gcacaaccgc accgcgaacg cactgacata tcccgaaccg cccggggaga actgatccag
     3661 gaaccacaac cgctgctgcg cgaacgacag cggcagctca ccgacacgat cgaccacggt
     3721 gatcgggggc gagtccgcca ccaccgattc cgccactgcc accgccatcg cggccactgt
     3781 gggattcacg aacaacatcc gcggcgagag ctccacgccg aacgccaccc gtacccggga
     3841 catcacctga acgctgagga tggagtcccc gccgagttca aagaagttgt cgtggattcc
     3901 gactcgttca gcgtgcagaa cctgcgccca gatctccgcc agggtctgct cggtagcgct
     3961 gcgcggggcc acgtactccc cgaccggctg cgtgagttgg tcgggcgcag gtagtgcctt
     4021 gcgatccagc ttcccggtcg gccccagcgg gagttcctcg agcgtgacga acagtgcggg
     4081 caccatgtag tccggcaggg cctgcgcggt atgcgcgcgc agttccgcca cggtcggcgc
     4141 actcccggtg gtgggaacca cataccccac
//
LOCUS       DASVXZ010000607         4078 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_156869, whole genome shotgun sequence.
ACCESSION   DASVXZ010000607 DASVXZ010000000
VERSION     DASVXZ010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156869"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..2144
                     /locus_tag="VF788_12765"
     CDS             198..2144
                     /locus_tag="VF788_12765"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEX8935035.1"
                     /translation="MDTELEELAAAHGVATWYRDAHRRRVDVDADVVRRVLGLLGVGA
                     DTPAQVRDALAVARAPKPPGTVVLRQGQRRKIREPGLLTDEYGTETPVKEALPAGLAP
                     GWYSLISGEAHTTVLVAPPTLPEPPRTWGWMLQLYALHSAGSWGIGDLADLREFIRWT
                     ATTHGGGAVLVNPLHAVTPTSPVQPSPYSPSSRRFVNPLYLSITGIASYRHGDPTLRA
                     EVDALRIPSGGERIDYEAVWQAKRAALELLWRAEGAPHPVMSDGLRDFATFCALAERH
                     GPRWSCWPDELRHPTTASADPDRVAFHAWVQQQCTEQLAATSDAARGMAIGVVHDLAV
                     GVDPEGADAWALQDVLAAGVTVGAPPDTFNQQGQDWGLPPWRPDRLAATGYAAYRDML
                     RAVLAHADGLRIDHVAGLWRLWWVPPGASPAQGTYVHYDAEAMLAALALEAHRAGAVV
                     IGEDLGTVEPEVSEALAAQRMLGCAVLWFTRDEDAPGTPLLAPQCWPQRAAASISTHD
                     LPTAVGFLRGEHVRARAVLELLNDEAAEWAQAAAERTELLALLRAEGLLTGENEEDVV
                     VAMYALLARTPCRLLLASPYDAVGEIRQPNLPGTVDEYPNWRLPLPVTLEELRRDPRV
                     ERVVAVLRATSSGLTGSAAASMES"
     gene            2182..2376
                     /locus_tag="VF788_12770"
     CDS             2182..2376
                     /locus_tag="VF788_12770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935036.1"
                     /translation="MSDDSLDKIRQTSEGWALEQEMEVAAEVYGPEPKGLRTPPAELS
                     DEELLERYKSLMGFDLKWET"
     gene            complement(2859..4058)
                     /locus_tag="VF788_12775"
     CDS             complement(2859..4058)
                     /locus_tag="VF788_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020635951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxide hydrolase"
                     /protein_id="HEX8935037.1"
                     /translation="MTDPVGEGVAIRPFRIDVPEEELVDLHRRVAATRWPERETVADE
                     SQGVRLATMQELVRYWGAEYDFRTFETRLNALPQFITEIDGLDIHFIHVRSPHENALP
                     VIITHGWPGSIIEMLNVVGPLTDPTAHGGDAEDAFDVVVPSMPGYGFSGKPTATGWDP
                     VHIAGAWIALMRRLGYTRFVAQGGDWGAQITDMMGAEAPPELLGIHSNMPGTVPPDVS
                     KALASGGPAPSDLSADESRAWEQLKFLYTKGIGYATEMALRPQTLYGLADSPVALAAW
                     MLDHDARSYEDIARAFEGDPVGNLTRDEVLDNITLTWVTNTGVSSGRLYWENKLGFFD
                     VKGVSVPAAVSVFPRELYQAPRSWTEQAYPNLIYFNEVGRGNHFAAWQEPNLFTTEVR
                     AAFRSLR"
BASE COUNT          674 a         1341 c         1384 g          679 t
ORIGIN      
        1 agacccaggt ctgggtccgc ttccccgaag gctggcgaat tgtctcagcc cacgtatcag
       61 aggtgcccac agctcacccc aacgcgatca cgacgtccgc ccagaacggg tggccggtgg
      121 gatagttccc gcaccgtaag aagccgctgc cgaaggtagg agagccgcgg tactgatctc
      181 ctgcgagcat ggcgggtatg gataccgagc ttgaggagct tgcagctgcg catggggtcg
      241 cgacctggta ccgggatgcg caccgcaggc gagtcgatgt cgatgccgac gtggtacgcc
      301 gggtactcgg gctgttgggc gtgggagcgg acactccggc gcaggtccgg gacgcgctgg
      361 ccgtggcccg ggcgcccaag ccaccgggca ccgtggtgct gcgccaaggc cagcgccgaa
      421 aaatccgcga gcccggcctg ctcactgacg agtacggcac cgagacacct gtcaaagaag
      481 cgctgccagc cggccttgcg cccgggtggt attcgctgat cagtggcgag gcgcacacaa
      541 ccgtactcgt ggcccccccg acgctgcctg agccgccgcg cacctggggc tggatgctcc
      601 agctctacgc gctgcactca gccggctcgt ggggcatcgg cgatcttgcc gatctgcgcg
      661 aattcatccg atggaccgcc accacgcacg gcggcggtgc tgtgctggtc aacccgctgc
      721 acgcggtgac gccgaccagc ccggtgcagc cctcgcctta cagcccctcc agccgccgct
      781 tcgtcaaccc cctgtacctg agcatcaccg gcatcgccag ctaccggcac ggtgacccga
      841 cgttacgggc cgaggtggac gccctgcgga tcccttccgg tggcgagcgc atcgactacg
      901 aagctgtctg gcaggccaag cgggccgcct tggagctgct ctggcgggcc gagggcgccc
      961 cgcacccggt gatgtcagac gggttgcgcg acttcgcgac attttgcgca ctcgctgagc
     1021 ggcacggccc ccgctggtcg tgctggcccg acgaattgcg gcacccgacc acggcgagcg
     1081 cagacccgga ccgggtggcg tttcacgcct gggtgcagca gcagtgcacc gaacagttgg
     1141 ccgccaccag cgacgccgcc cgcgggatgg ccatcggggt ggtgcacgac ctggccgtcg
     1201 gggtcgaccc cgagggcgcc gatgcctggg cactccagga tgtgctggcc gccggggtga
     1261 cggtcggcgc cccgccggac acatttaacc agcaaggaca ggactggggg ttgccgccgt
     1321 ggcgcccgga ccggctagct gccaccggct acgccgccta ccgggacatg ctgcgcgcag
     1381 tgctcgcgca cgccgacggg ctgcgtatcg accatgtcgc cggcctgtgg cggctgtggt
     1441 gggtgccgcc gggagcgtcc cccgcccagg gcacctacgt gcactacgac gcggaggcga
     1501 tgctcgccgc actggcgctg gaagcgcacc gggccggcgc ggtggtgatc ggcgaagacc
     1561 tgggcacggt tgaaccggag gtgagcgagg ccctagcggc acaacggatg ctgggctgtg
     1621 cggtgctgtg gttcacccgc gacgaggatg ccccgggcac gccgctgctg gctccgcagt
     1681 gctggccgca gcgtgctgcg gccagcatct cgacccatga tttgcccacg gctgtcggct
     1741 ttcttcgcgg tgagcatgtg cgggcacgtg ccgtgctgga gctgctgaac gacgaggccg
     1801 cagagtgggc tcaggccgca gccgaacgca cagagctgct ggccctgctc cgcgccgaag
     1861 gcctgctcac gggagaaaat gaggaggacg tcgtggtagc gatgtacgcg ttgcttgcgc
     1921 gcacgccgtg tcggttgcta ctggcctccc cgtatgacgc ggtgggcgaa atccgccaac
     1981 ccaatctgcc cggcaccgtc gatgagtatc cgaactggcg gttgccgctg ccggtgactc
     2041 tggaggagtt gcggcgtgat ccgcgggtcg agcgggtggt ggccgtcctg cgtgcgacca
     2101 gcagcggcct gacgggcagc gcagccgcca gcatggaatc ataggtggca ggcgggggcc
     2161 ttcgcttcgc caggaggtgc catgagcgac gactctctcg acaagatccg gcaaacgtcg
     2221 gagggatggg ctcttgagca ggagatggaa gtagcagcag aggtttacgg ccccgagccg
     2281 aagggacttc gcactcctcc ggccgaattg agcgacgaag aacttctcga gcggtacaag
     2341 tcgctgatgg gtttcgacct gaaatgggaa acgtaactac tgcgataggt gtggccccgg
     2401 ccccaagtag ctcatgtgcc gatctgcggg accgggtagc agcaccgcta cccgaacgtg
     2461 agcacgtacg cctcggcccc gggtagtcga tccctcgctc cgtcgtcgcc tgccgcaggc
     2521 ggtcaatttc gtgctcgaac gagaactctg gcgtgccact cggtcgcccc gccgagcgag
     2581 ggcatgtgca gacgttccct cactatcgcc tagcgaggcg accggaacgc tgcgcggatc
     2641 tcctcggtga agagctgcgg ctgctcccag acggcgaagt ggccgcctct gtcgacttcg
     2701 ttgaagtaac ggtctctttc tcgggccagt tcgtggccgc gatgcgtcga cgaatgtcct
     2761 ccaaagccgc atccggaatg tcgacgtgga atggacggat gtcgatggcg gtctcgacgg
     2821 tgctactcat gactacctcc gtttggtggc agcaccgatc aacgcagtga ccggaatgcg
     2881 gcacgcacct ccgtcgtgaa gaggttcggc tcctgccaag ccgcgaagtg gttgcccctg
     2941 ccgacttcgt tgaagtagat gaggttgggg taggcctgct cggtccaact ccgcggcgct
     3001 tgatagagct ctcgagggaa gacgctcacg gcagccggaa ccgagacgcc cttgacgtcg
     3061 aagaagccga gcttgttctc ccagtagagg cgacccgagg aaacccctgt gttcgtcacc
     3121 cacgtgagcg tgatgttatc gaggacctcg tctcgtgtga ggttccccac ggggtcgcct
     3181 tcgaaggccc gtgcgatgtc ctcgtagctg cgcgcgtcgt ggtcgagcat ccaggcggcg
     3241 agggcgacgg gcgaatcggc gagcccgtac aacgtctgcg ggcgcaacgc catctcggtc
     3301 gcgtatccga tgcccttcgt atagaggaac ttcagctgct cccacgcgcg gctctcgtcg
     3361 gctgacagat cagacggcgc cgggccgccg gacgcgagcg ccttcgaaac gtcaggtggg
     3421 accgtgccgg gcatgttgga gtgaatgccg agcaactccg gaggtgcctc tgcacccatc
     3481 atatccgtga tttgcgcacc ccaatcgccg ccttgcgcga cgaatcgggt gtatcccaga
     3541 cgcctcatca gcgcgatcca ggcacccgcg atgtgaacag ggtcccagcc ggtagccgtc
     3601 ggtttccctg agaacccgta gccgggcatc gacggaacca ccacatcgaa cgcatcctcg
     3661 gcgtcgccgc cgtgtgccgt cgggtcggtg agcggaccga cgacgttcag catctcgatg
     3721 atggagcctg gccagccgtg cgtgataatg accggcaacg cgttctcgtg cggcgacctg
     3781 acgtggatga agtgaatgtc gaggccgtcg atctccgtga tgaactgagg cagcgcattc
     3841 agcctcgtct cgaacgtccg gaagtcgtac tcggcacccc agtagcgcac gagctcctgc
     3901 atcgtcgcaa gccgcacgcc ctgggactca tccgcaacgg tctccctttc gggccagcgc
     3961 gtcgccgcca cgcgtcggtg gaggtcgacg agttcctcct ccggaacgtc aatgcgaaag
     4021 ggtcggatcg cgaccccttc cccgactgga tcggtcatcg tggtctcctt tccttagg
//
LOCUS       DASVXZ010000608         1551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_930425, whole genome shotgun sequence.
ACCESSION   DASVXZ010000608 DASVXZ010000000
VERSION     DASVXZ010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_930425"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VF788_12780"
     CDS             complement(<1..626)
                     /locus_tag="VF788_12780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEX8935038.1"
                     /translation="MNRQGHWGAGSSLVCAVLLLTACGSDTGGGAGPSTNAGATADIT
                     CSSGSLTAAGSTAQQNAIAQWTKAYINKCSGANINYSGGGSGQGVQQFTDGKIDFAGS
                     DFPLAEGKEQQAADARCKTGPAINVPMVGGPIAIGYNVPGLTKGLNLSAGTLAKIFSG
                     KITNWGDPAIAKDNPGAQLPSLGIQSFHRSDGSGTTYNFTNYLSNDAKA"
     gene            complement(1031..1354)
                     /locus_tag="VF788_12785"
     CDS             complement(1031..1354)
                     /locus_tag="VF788_12785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935039.1"
                     /translation="MPQQPQSDVVEGDGASLLGAMRGGFGGWSRWSEEEHTKTDIREC
                     TDQHCMNVEVNCGFQGLIPDSPLSQSAAVSDELRAAWRTMLASEGKPTSGTKSVKDIV
                     FGTAP"
BASE COUNT          306 a          492 c          450 g          303 t
ORIGIN      
        1 gccttggcgt cattgctcag gtaattggtg aagttatagg tcgtcccgga accatcggaa
       61 cgatgaaagc tctgaatacc gagcgatggc agctgggcac caggattatc cttcgcgatt
      121 gccggatcac cccaattcgt gatcttgccg ctgaagatct tggccaaggt accggctgac
      181 agattcaggc ctttcgtgag gcccggcacg ttgtaaccga tagcgattgg accgccgacc
      241 atgggaacgt tgattgctgg cccagtctta cagcgcgcgt ctgcggcttg ctgctccttg
      301 ccctcagcca gcgggaagtc agagccagcg aagtcgatct tcccatcggt gaactgctgg
      361 acgccttgcc cagaccctcc accggaatag ttgatgttcg cacctgaaca tttgttgatg
      421 taggccttgg tccactgtgc tatcgcgttc tgctgggccg tggaccccgc ggcagtcaac
      481 gatccggaac tacacgtgat gtctgccgtc gcacctgcgt tcgtcgacgg tcccgcgcca
      541 cctccggtgt ccgagccaca tgcggtcagc agcagcacgg cgcagaccag cgagctccct
      601 gcgccccaat gcccttgacg attcaccaaa cctccactgg tgggattcga taggtgtatt
      661 gccagcaccc aacgaccgct ggcgcaacct atagagtctg cggcagggca acagtggacg
      721 gcgcctagtt aggacatgaa caccagatga atgttccccc acacgagagg agtcaggcac
      781 ccgttcggat cagcggcgag ccggctgaaa acggatcgta atcaatccga ggcgttctgg
      841 tgtcccctcg gatgaaggtc gatctcacgc cgctcaaacc ggcaaggctc cagataaggc
      901 cgccggcggg cgggacggga tgagatcgca cagtcgagtg gcgatcaacg cacaagccga
      961 tcccgcaggc aacggccgtg cagcgtcacg ctgcgaaacg acgggatcgg ctggctgagt
     1021 gactcgggtg tcagggcgcg gtaccgaaga cgatgtcttt cacgctcttg gtccccgagg
     1081 tcggcttgcc ctcactggca agcatcgtcc gccatgcggc acggagctcg tcactgacag
     1141 ccgcagactg agacagcggt gagtcaggga tcaatccctg aaaaccgcaa ttcacctcaa
     1201 cattcatgca gtgctggtcg gtgcattccc ggatgtccgt tttggtatgc tcttcttcgc
     1261 tccaacgact ccagccgcca aacccgccgc gcatcgcacc cagaagcgac gccccgtcgc
     1321 cctcgacgac gtcggactgc ggctgctggg gcatctcctg agcctcacgc tgttcgttca
     1381 tagttcccag tctacaggcg atgatcggtg aacgcggtcc gccgcaaaag cgccggctca
     1441 gtcggaccac cctcaacgat tgcgctgctc accgtgtcga gacttctcgg tctttcactc
     1501 gaacgactgg cgcgtgacca accctggtgg cctagcgtga tgtccttcga a
//
LOCUS       DASVXZ010000609         8841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_67239, whole genome shotgun sequence.
ACCESSION   DASVXZ010000609 DASVXZ010000000
VERSION     DASVXZ010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8841
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67239"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..535)
                     /locus_tag="VF788_12790"
     CDS             complement(<1..535)
                     /locus_tag="VF788_12790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005158583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEX8935040.1"
                     /translation="MTLFPSFPSIDAGCPQQVQARLVALRGIPGSVPEPDGSGAAVES
                     PHDPPPQARAPGERDLPATSLAGRLVRWWVPAPLREARWDAGRPAAVILSLVAALAAV
                     IAAFGVWRDRPVPEPAPALPLVTTAAAKSSSTPPLPGPLHEVVVSVLGRVMHPGLIRL
                     PDGTRVADALAAVGGALP"
     gene            695..1840
                     /locus_tag="VF788_12795"
     CDS             695..1840
                     /locus_tag="VF788_12795"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX8935041.1"
                     /translation="MSIKDKSGRPDCPPEIEHFTTVVIGGGQTGLTVGYYLAQFGQPF
                     VIVDASERIGDSWRQRWDSLRLFTPACYDGLPGRHFPSSAWSFPTRNEMADYLQAYAA
                     QFDFTIISGFRVDRLSRAGNRYILASRDRRIEADNVVVAMSSYQRPTVPEFAMELDTS
                     IRQLHSHQYRNQTQLRDGGVLVVGAGNSGADIALDVAGRHPTWLSGRSVGHVPVRLDG
                     VAARLLLVHLTLRVLFHRVLTVNNSIGRQVQPRVLSHGGPLIRVKPRDIFAAGIERVP
                     RVVGVSQGLPLLADKRVLAVSNVVWCTGFRPDFSWINLPGFSAQEPWRHCGVIPSQPG
                     LYFVGLLFLYAMSSSMIHGVGRDAERVARLIASRHAGTRSMHRRGHL"
     gene            complement(1837..2706)
                     /locus_tag="VF788_12800"
     CDS             complement(1837..2706)
                     /locus_tag="VF788_12800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005504 - fatty acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEX8935042.1"
                     /translation="MTVAVVTDSTAYFPDGFAERSGVRQVPLHVLVDDTHWLDGLQFG
                     SEALVAALARRASVTTSRPTPEEFEAVYTEAIRAGADTVMSVHLSRALSGTWDSARIA
                     AKNVGAERVRVVDSRTTGMGLGFAALAAAAVAAGGGDLNAVCDTATRVGARSRVFFSV
                     DSLDYLRRGGRIGHATAMLGTALSVKPLLHVDSGRVVPLEKVRTGTRARARLVELVEQ
                     AAGPSPCALAVHHLGAAERAAGLVEQLRSRVPTVSECLVSEVGAAIGAHAGPGMLGVV
                     VLPGGINERLAVD"
     gene            complement(2757..3362)
                     /locus_tag="VF788_12805"
     CDS             complement(2757..3362)
                     /locus_tag="VF788_12805"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX8935043.1"
                     /translation="MTLRQLVLWRHGETDFNVEQRIQGQLDSMLTVNGLGQARRAVRA
                     LAELKPEILMASDLSRAGDTAAVLAAETGMPVRVDKRLRETNCGTWQGLTHAEVEVLC
                     PGGIQTWRGDPQWAPPGGETRVEVATRAAHVVAELDADGVDSALLCTHGGLIAGLTPL
                     LLGLPVLCWSVFGGIRNCHWTVLARRDSRWRLLSYNGAAPV"
     gene            complement(3359..3742)
                     /gene="rsfS"
                     /locus_tag="VF788_12810"
     CDS             complement(3359..3742)
                     /gene="rsfS"
                     /locus_tag="VF788_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEX8935044.1"
                     /translation="MSASDQARALALTAANAAAGKKAHNITVLDVSDQLVITDCFVIA
                     SAPNERQVQAIVDAVEEKMAAAGSKPVRREGAREGRWVLLDFVDVVVHVQHVEERSFY
                     GLERLWKDCPTIPFDVNAAEADESE"
     gene            4539..4691
                     /locus_tag="VF788_12815"
     CDS             4539..4691
                     /locus_tag="VF788_12815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935045.1"
                     /translation="MRPEHLESTLPKLDQTEDPRGSAVAWALLGMGAVLIVGIVSALS
                     WMAGAW"
     gene            5891..6259
                     /locus_tag="VF788_12820"
     CDS             5891..6259
                     /locus_tag="VF788_12820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX8935046.1"
                     /translation="MATVELTKESFSDVVGGARLVLVEFWGPLCRLCRLFEPIFEQVS
                     QRHSDAVFGKVDAQAHAQLAAMFRVMSLPTLVIMKEGFVIYAGSGTLSLEDLEDLVDQ
                     AHALDMDEVRRKRAGRHRTA"
     gene            complement(6651..7184)
                     /locus_tag="VF788_12825"
     CDS             complement(6651..7184)
                     /locus_tag="VF788_12825"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8935047.1"
                     /translation="MKASHECARRGADPGGVSLVSISASCGDAGAVSDHHATVVTAQD
                     IDWLVAHLRAVVMASPAVWAGRGMTLLQLTALHLIGALAPVSLTELAQALGTRPPATS
                     AMVDRLTHAQLVRRTPDPHNRRRVQLTLTTDAHQIIGDTDPDTARRLQAVLTGMSPQA
                     RQHLIDILIDTIRRSVE"
     gene            7774..8163
                     /locus_tag="VF788_12830"
     CDS             7774..8163
                     /locus_tag="VF788_12830"
                     /inference="COORDINATES: protein motif:HMM:NF036408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5313 family protein"
                     /protein_id="HEX8935048.1"
                     /translation="MRTREPGPLWWTWYAFGGKLPERYREWVMHDVTCRTWVLRHVAR
                     SLVQVAPVAILLLVVLGFSWITYLGLAAGAILALIYSMAFIEESGEHRLAKHGYPLGT
                     GREIRMRRSKRTADEEHYNAVYRSPEN"
     gene            8582..>8841
                     /locus_tag="VF788_12835"
     CDS             8582..>8841
                     /locus_tag="VF788_12835"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935049.1"
                     /translation="MREKRRKYSPEYKSEAVRLVIETSRPITEVAREIGVHEGILGAW
                     VNKYRTEHAGDEPPLTMSERARLRELEREVRELRMKTEFLGKA"
BASE COUNT         1645 a         2789 c         2769 g         1638 t
ORIGIN      
        1 cgggcagcgc accgccgacc gcagccaacg catcagcgac tcgggtgcca tcgggcagcc
       61 ggatcagacc agggtgcatc acccggccca gcacgctgac cactacctca tggagcggcc
      121 ctggcagtgg cggcgttgac gaagacttgg cggcagctgt agtgaccagg ggtaacgctg
      181 gagcgggctc aggcaccgga cgatcccgcc atactccgaa cgcggcgatt accgcggcca
      241 gtgccgcaac cagcgacagg atgacagctg ccggccggcc cgcgtcccac cgggcttccc
      301 gcagcggtgc gggcacccac caccggacca gccgaccggc taatgatgtg gcgggtaagt
      361 cacgttcacc gggcgctcgc gcctggggag gtggatcatg cggggattcg actgccgcgc
      421 cggatccatc gggctccggt accgaccctg ggataccgcg caacgccaca agccgcgctt
      481 ggacctgttg gggacagccg gcgtcgatgg atggaaaact ggggaacaag gtcacgtggc
      541 gacgctaggc cgattcgcct ctcaccctcg aggaccgcag tcctcagctg tggataacgg
      601 gggtggttgt ggataagtca cggtacttcc cacgtgcgcc cgggtcacac ccgggtcact
      661 gtcgggaagt catgcgaccc tcgggggttc agcgatgagt atcaaagaca agtccggaag
      721 gcctgactgt ccacctgaga ttgagcactt cacaacggtg gtcatcggcg ggggccagac
      781 gggtctcacg gtcggttact acttggcgca gttcggccaa ccattcgtga ttgttgatgc
      841 gagcgagcgg atcggagact cgtggcgtca gcgctgggac tcgctccgtc tattcacacc
      901 ggcatgctac gacgggctcc ccggtcggca cttcccatcg agcgcatggt cgttccccac
      961 cagaaacgag atggctgact acctgcaagc ttacgccgcc caattcgatt ttacgatcat
     1021 atctggtttc cgcgtcgata ggctctccag agcgggcaac cgatatatcc tagcgtcacg
     1081 agatcgccgg attgaggccg acaacgtagt ggtcgcgatg tccagctacc aacggccgac
     1141 cgtgccagag ttcgcgatgg agcttgacac cagcatccgc caactgcatt ctcaccagta
     1201 ccggaaccag acccagctgc gagacggcgg tgtccttgtt gtaggtgcag gaaactcggg
     1261 ggctgatatc gcgctcgatg tcgcgggtag acaccccacc tggttgtcgg gtcgcagtgt
     1321 cggtcatgtc ccagtccgac tcgacggcgt tgcggcccga ttgctgctgg tgcatctgac
     1381 actccgggtc ctctttcacc gggtgctgac cgtaaacaac tccatcggcc ggcaggtcca
     1441 accgagggtt ctttcccacg gtggtccact catccgcgtc aaaccccgcg atatttttgc
     1501 agcggggatt gaacgcgtgc ccagggtcgt cggcgtgtca caaggtttgc cactgctggc
     1561 cgacaaacga gtcctcgcgg tgtccaatgt ggtctggtgc acgggtttcc gtccagattt
     1621 ttcctggatc aatcttcccg gtttcagtgc acaggagcca tggcgacact gcggagtcat
     1681 tccgagccag cctgggctgt atttcgtcgg cctgcttttt ctctacgcga tgtcatcgtc
     1741 gatgattcat ggggttgggc gggacgccga acgcgtcgcc agactgatcg cctcgcggca
     1801 cgccggtact cgatccatgc accgccgcgg ccacctttag tcaacggcga ggcgctcgtt
     1861 gatgcctccg ggtaggacca cgacaccaag catccccggg ccggcgtgcg caccaatcgc
     1921 cgcccccacc tcggagacca gacattcaga cactgttggg actctggacc gcagctgttc
     1981 gaccaggcct gcggcgcgct cagcggcgcc gaggtgatgc acagcaaggg cgcatgggga
     2041 cggcccagcc gcctgctcta ccagctcgac gagccgcgcc cgcgcgcgcg taccggtacg
     2101 aaccttttcc aacggaacaa cgcggccaga atcgacgtgc aacagcggtt tgacggacaa
     2161 ggcggtgccg agcatggcag tcgcgtggcc gatcctgccg ccccggcgca gatagtcaag
     2221 gctgtccacg gagaagaaca ctcggctgcg ggcgccgacc ctggtcgcgg tgtcgcacac
     2281 ggcgttcaga tcgccgcccc ccgccgcaac cgcagcagcg gcgagtgccg cgaatcccag
     2341 gcccatccca gtggtgcgtg agtcgaccac tcgtacccgc tccgctccga cattcttggc
     2401 agctatcctc gcggagtccc acgtgccgga cagtgcgcgg gacagatgca cggacatcac
     2461 ggtgtcggcg ccagcccgga tagcctcggt gtacaccgcc tcgaactcct ccggtgtcgg
     2521 ccgtgaggtc gtcactgagg cccgccgcgc gagggcggcc accagcgctt ccgatccgaa
     2581 ttgcaacccg tccagccagt gagtgtcgtc gaccagaaca tgcaatggaa cctgccggac
     2641 accactacgc tcggcgaacc cgtcagggaa ataagcggtg gagtcggtga cgacggcaac
     2701 ggtcacgatc atcagcgtag ggtggagcac ccgctcggcg gtggaacaat gactcgctac
     2761 acgggcgcag caccgttata cgacaacaac cgccacctgg agtcacggcg cgcaagcacc
     2821 gtccagtggc agttgcggat ccctccgaac actgaccagc acagtaccgg caagccgaga
     2881 agcaggggag tcagcccggc gatcaggccg ccgtgcgtgc acaacagcgc actgtccaca
     2941 ccgtctgcgt ctagctcagc gaccacgtgc gcggcccggg tagccacctc cacccgcgtc
     3001 tcgccacctg gcggcgccca ttgagggtca ccgcgccaag tctggatacc gcccgggcaa
     3061 agcacctcca cctcagcgtg ggtcagaccc tgccacgtcc cgcaattggt ttcccgcaac
     3121 cgcttgtcga cccgaacggg cattccggtc tcggcggcga gcacggctgc ggtgtccccg
     3181 gcacgggaca ggtcggaagc catcaatatc tccggcttca gctccgcgag cgcgcggacc
     3241 gcccggcgcg cctgaccgag gccgttgacg gtcaacatcg agtcaagctg accctgaatc
     3301 cgctgctcca cgttgaagtc agtctcacca tgcctccaga gaacgagctg ccgcagggtc
     3361 actccgactc gtccgcctca gcggcgttga catcgaaagg aatggtgggg cagtccttcc
     3421 acagccgctc gagaccgtag aaagaacgct cctcgacatg ctgcacgtgc accaccacgt
     3481 cgacgaaatc cagcaacacc cagcgtcctt cacgggcgcc ttcccggcgc accggcttgc
     3541 ttcccgcagc cgccatcttc tcctcaacag cgtccacaat ggcctgaacc tggcgctcgt
     3601 tgggcgccga ggcaatcacg aaacagtctg tgatcacaag ttggtcagac acgtcgagca
     3661 cggtaatgtt gtgcgccttc ttgcctgccg ccgcattggc cgcggtcagc gcaagagctc
     3721 gcgcctggtc agaggctgac acgtcactcc ttttccccgg cactcaccgc cggcgctcgc
     3781 cagcgcgctg ccgtgcagtt cccggctgtc cgcgccccat agtcagatga gcgtacgtgt
     3841 tgtcaggcgg acaacgcgga ccacctgcag gacagcgcgt cagcgacgct cgcagcggcc
     3901 ccctcacaat gggttgatgc gggccagcca agtaatctgc agtaagtaac attagcggct
     3961 aaaactccgc agttgcatta agaaacggct tgaaattcgc atctgcaagt agcactatct
     4021 gagagggctg atctttctag cggaagggtg gctgttgatg tagtgggacc cacgggcacc
     4081 tcggcctggc tggctcaccg tagtgattac ctcgcgctcc ggatgggtcg gcgactcaca
     4141 ctatgtgcct gaacttggtg tcgtagagag atcaatgtcg actgccgcgt cggtgccagt
     4201 ctggcggtcc actgcaaagt gcagtatcca ctgcccttgg ccccccaact gcaatgccca
     4261 gaaccgaaat gtaccggaca tcgaagaatt tttttctgtg ctcgagtagc gatggtttat
     4321 cgagccgcct accacagggt tggttctggt caacgatcct tgacgagaat gtttgtgccc
     4381 gcccgcgagg ggtacctacc gcagtagcga gtagcacacc gcacccgtct acctagacag
     4441 aaaggggaat catcatgacg ctcatttcga gcggtgtgaa taccaggccg gttaatcagc
     4501 acaccgaacc gcgcagggtg accccgcagg ctaaactggt gaggccggag catctcgagt
     4561 ccaccttgcc gaagctggac cagacagagg atccccgcgg tagtgccgtt gcctgggcgc
     4621 tgctagggat gggcgcggtc ctgatcgtcg gcatcgtgtc agcactgagc tggatggctg
     4681 gcgcctggta ggacaggaac atcgacagcg attacttcag tgaaagcctg ccaccgagtg
     4741 cgcggcagca tcacgacccg agccacaatc ccgaattcgt cccaggctcc ccgttgtaac
     4801 cccggattgc gcgcacttgc catctcacat ttcccacacg tggacagcgc gattctccag
     4861 agtcttgccg tcccgctggt cccgctccgt ggccaaaacg acaccatgct cagcatggcc
     4921 aggatgtcga ggcttccacg tggaaggtac cttcggacag cggaggtcat tcatgatgtg
     4981 caccgcctag cattgggggg gcaagactcg aagtaccctc cgtccctgat cggtggcctt
     5041 tcagttgacg ccgcgctcgg agtggaggag tgggcggtga cccagacgta ccgcacgctg
     5101 cgcgtgccgg agcgatgcag gttcggtcga cgtggcgacc gggtggtctt gcccggattg
     5161 tcacccgatc ctgatcaatc ctgtgcccgc cggggcacct ggtgaacgga tcccggacca
     5221 cggctggcat cggagataac cggggtcaaa gagtattggc ctaagcgtca acgtgtctaa
     5281 cgaagaacac cggttgatac ccgaaccaat ccgggatggc ctgcacacga aactcagtgg
     5341 ggcccggggg aaggctgaaa gcgacggtga aggtctgtcg cttaccaggg ggcaacattt
     5401 ggctgggcat cccgacaccc ttggttgagt cgaagatctg cgcagcggct tgatcaccgg
     5461 ctgccgctta gagactcact gctgccaggt ttcacgccga cgaggttcct cggcttgacg
     5521 gtgcggtcag tggtggccgg aggccatccc gtcagcacca tccctgcgac gcgctcgatg
     5581 acggtgacca ctagtgagtt ccggcttgga agactgcacc cgatccgcgg tcaggggcct
     5641 cggtccgcgt tccaccgagc catgatgccg acccgttgac cgaggttgac cggtcgtcat
     5701 ggtgcggtaa cagtcgcgtt ggcctgctgc gggtggcggc cggctggatg cggctgagac
     5761 aattgccctt gccgctggag tgcatccgcg gcctagatca cctctctccc gggcaagacg
     5821 tcttgcacag caccgtggga gcagctggtg tctttcccgg taccaccgaa gagatcgagc
     5881 ggagggtgag atggcgacgg ttgagctgac caaggagagc ttttccgacg tcgtgggcgg
     5941 cgccaggttg gtgctggtcg agttctgggg gccgctgtgt cgactgtgcc gcttgtttga
     6001 acctattttc gaacaagtat cgcagcgtca ctctgacgcg gtgttcggca aggtcgacgc
     6061 ccaggcgcat gcccagcttg ccgctatgtt ccgtgtcatg tcccttccca ccttagtgat
     6121 catgaaagaa ggtttcgtga tctatgccgg atcgggcacc ctgtcgctgg aggacctgga
     6181 ggacctcgtg gatcaggccc atgcattgga catggacgag gtacgcagaa agcgagctgg
     6241 ccgtcacaga acggcataaa ccggttatcg ctggattctt tgcgcgccag aacgcacgcc
     6301 acgcaccggg tggctcaaat gatcgtgcga ggtcgagcac ggcggagatc agctcgctcg
     6361 ccggaaaccg gtcccggagc agtcgcgccg gaagggactg ggtttcgaac ctcttgaccc
     6421 ccctggacgt gggagtagct gtctgtcctg gtcagtgatg atgtcagtgc cgtgcggacg
     6481 accggccaac gtatgggtcg tccgcatgcg tgcaaggtat tgtggccccc agagcgtcct
     6541 tctttccgag gtgtgattgg ccctgcaccg cgctgtcggc gatgggcgcc gcggcagtgc
     6601 tggttgataa cggggatgca gcatgtgtag agcggctgat gcgatcccga ctactcaacg
     6661 gaccgtcgta tggtgtcaat aagaatgtcg atgaggtgct gacgggcctg tggactcatg
     6721 ccggtgagca ctgcctgcaa gcgtctggcg gtgtcgggat cggtatcgcc gatgatctgg
     6781 tgagcgtcgg tggtgagggt gagctggacg cgtcgccggt tgtgcgggtc cggcgtgcgc
     6841 cgcactagct gtgcgtgggt tagtcgatcg accatcgcgg acgtggccgg cggtcttgtt
     6901 cccaaggcct gagccagctc ggtgaggctg accggggcca gcgcgccgat caggtgtagc
     6961 gcggtgagct ggagcagcgt catcccgcgg cctgcccaga cggcggggct ggccatgacc
     7021 accgcccgca ggtgggccac gagccagtcg atgtcctggg ccgtcaccac cgtcgcgtgg
     7081 tggtcactta ctgcacccgc gtcgccacag gatgcgctga tgctgaccag tgacacgccg
     7141 ccagggtcgg ctccccgccg tgcgcactca tgactagcct tcatgcgttc tccctggccc
     7201 gacaccgacc ctatgtccct cgtccagccc gttcagtcga tacctggtcg atcgtgtgct
     7261 gtgtcccgct gacagaggga gataccgagc gcccgcacag atacaccgac ccccgcccaa
     7321 agctgggtgc cgttcgcccc gctgcggggc catcacgttg gtcgcactgg tgtctcgtga
     7381 tccaagggcg tttcatgcct gttaaatcgt ggcgatggtc aagttcttta cgagggcggg
     7441 cgattttttc ggggaattct ccgaaaattt cagcttactc gagagaatgt tgccaaatgt
     7501 gcacaatcat atacccagag tttgaatggg ggctgtatcg cgtcaaattc ccgaggcgag
     7561 gtgagcggcc cgcctcacat cacgacacca caccgctcac aagcaggaac ccggaggcac
     7621 ctgtacgtgc ggtcctgcgg tccgtgatcg aagcacgcga cataggtatg cggcgttcgc
     7681 tgggtggtct tcgaatgtgg cacggtgctg ctcgttgccg tcagacctcc gactattgct
     7741 cggtgccccg cggcagctgc ttatgctgga cgggtgcgca cccgagaacc cggcccgctg
     7801 tggtggacct ggtatgcatt cggaggcaag ctccctgagc ggtaccggga gtgggtgatg
     7861 cacgacgtga cgtgtcgaac ctgggtgctg cggcacgtgg cccgcagcct ggtgcaggtc
     7921 gccccagtcg cgatcctgct gctggtggtc ctgggttttt cgtggatcac ctacctcggc
     7981 ctcgccgctg gcgccattct ggcgctcatc tactcgatgg ccttcatcga ggagagcggt
     8041 gagcaccggc tcgccaagca cggctatccg ctgggcaccg gccgcgaaat acgcatgcgg
     8101 cgaagcaagc ggaccgccga cgaggagcac tacaacgccg tctaccggag ccccgagaac
     8161 tgagcagctc ccgtcataag cggtagtaat cccggctcgg agtgacctgc gccgatcacc
     8221 tgctatagca cttctgagct gcaaatactt ttcagtagtt ctcaaaaaat tctcatgcct
     8281 gcccaacgtc tgacggcctg gagacggcct gatctcggtt ggcctcacac tgggtacgtg
     8341 tcggccgatg acatcgccaa gagacttgcc cagcatgcgc gtgctcttca gcacgagatc
     8401 catctcgtgg cggacctgtt ccaacagacc gacttccttg gtgacatcaa caacttgccg
     8461 cacgctcact acggctactt gatggccacg gtcggccaga tcgacaccgt gtccgtttgg
     8521 cgtgcctccc agatttcgga tggcggaccc aataaggtcc cgtccggatg gaggatgata
     8581 catgcgggag aagcgccgga aatatagtcc ggagtacaaa tctgaagcag tacggttggt
     8641 gatcgaaaca tctcgtccta tcaccgaggt cgctcgtgaa atcggggtgc atgaggggat
     8701 cctcggcgct tgggtaaaca agtaccgaac cgagcatgcc ggcgacgaac cacccttgac
     8761 tatgtcggag cgagcccgcc tccgggaact tgagcgtgag gtccgggagt tgcggatgaa
     8821 aaccgagttc ctgggaaagg c
//
LOCUS       DASVXZ010000610        12897 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1233041, whole genome shotgun sequence.
ACCESSION   DASVXZ010000610 DASVXZ010000000
VERSION     DASVXZ010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12897
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1233041"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1974)
                     /locus_tag="VF788_12840"
     CDS             complement(175..1974)
                     /locus_tag="VF788_12840"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEX8935050.1"
                     /translation="MGVSQRPGIGAWPFDGGATFRVWAPNASQVSVQLLSGAAAGQTV
                     ALMAEEGGYWSADVPEVGAGDGYLYALTWQDQTLLRIDPYARHVTNSAGHGLVYDEAA
                     FVWAEEDYRSPSWDELVIYELHVGTFAPAVDGQVGNLVEATARLPYLRQLGVTAVELL
                     PVAEFAGDRSWGYNPALPFAVESSYGGPDALKEFVHAAHELGIAVLLDVVYNHLGPGD
                     LDHDLWRFDGWYENNGGGIYFYQDWRAETGWGSRPDYGRPQVRQYLRDNAASWLGTYR
                     LDGLRLDATASIRNATGGSDPGQDIPDGWRLLQAINDDVTTAQPWKIRIAEDMRNNEW
                     ITKPTAEGGAGFSAQWDPDFVVQVRQAMLTPEDAARSMAGVAAAITRQYDGHALTRVV
                     FTESHDADANGGQRVPEAIDPGHADSWWSKKRSTLGAALVLTAPGIPLLFQGQEFLEN
                     LWFADSRPVDWVKKDTFAGIWALYRDLIRLRRDLDGHTRGLRGEGVQVHHLNDVDKVV
                     AYHRWKDGGPQDDTIVLLNFANRAYDAYTIGFPRPGLWRVRFNSDWSGYDHDFGGHVS
                     LDCTAWPQPRDGLPWSGNLSIGPYTTLILSQDN"
     gene            complement(2215..2790)
                     /locus_tag="VF788_12845"
     CDS             complement(2215..2790)
                     /locus_tag="VF788_12845"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HEX8935051.1"
                     /translation="MRIHRLAGVLAAAAAAGGLLAGCGSKTNPVAPPPPTASRAPAAT
                     QQPHNQADVVFIQNMILNHTRAITMSQSARNQAISPQVKDLVTRIEAEQSPQTQQMSA
                     LLTEWGIPAPTATSTVGGTGNGQVPGTVSGAGFDRMLLQMMIVRHQGAVDMSQTELTQ
                     GSNPTTRNLAQQILSTQQAQISEMQALLQVI"
     gene            complement(3172..4062)
                     /locus_tag="VF788_12850"
     CDS             complement(3172..4062)
                     /locus_tag="VF788_12850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX8935052.1"
                     /translation="MLSVALAVLAALGNATASVLQRKANRDKPEGQARGLALFWHLVH
                     RPAWLAGVAVLVVAFLLQAAALATGPIVVVQPVLVVELAFTLLLASMVFHSRLHAREW
                     TAIAGMSVGLAGMLYALQPGGGDPHRASIGRWVTGIAVSLAVASVFIVLGYRAEGTRR
                     AAYLGLATGIGFGLVAALVAGIGAAYSASGISGVLWASQTYLALVLGPGFFFLLQKTL
                     QAGPLVASQPALTLVDPLVSVVFGIAVFDEHLRTGTWLILALFGAALIIVCTVLLACS
                     PLLQGSGGAESRSTRSAELD"
     gene            4324..5049
                     /locus_tag="VF788_12855"
     CDS             4324..5049
                     /locus_tag="VF788_12855"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX8935053.1"
                     /translation="MTTPRGNSSSWSSELASFVIAGLGRYLLALLAALIIAGHLVWFA
                     TRRRTQLGYLAGVGLGIYKAAGPGLVGDYGVADPKRPLGRAAAVVWTIVGVSFVSLFT
                     AALANHLTVQNIESKITGVQDLSGGKVTTVTGSSAAGYLTAHAITFTSVPTINDAYRQ
                     LDSGRVDAIVFDAPVLQHHIKLTGSTNETVVGGIFARENYGIALPTGSALRKKINETL
                     LDITADGTYDELYAKYFGDANSG"
     gene            complement(5177..5641)
                     /locus_tag="VF788_12860"
     CDS             complement(5177..5641)
                     /locus_tag="VF788_12860"
                     /inference="COORDINATES: protein motif:HMM:NF021425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2127 domain-containing protein"
                     /protein_id="HEX8935054.1"
                     /translation="MAGGQDRSRLLPVLAVERVLRAVLLIGVGLILLTHAHADWVDLA
                     RGFIGRVGLDPSHNETGRLISHLAGLGPRRAQRDGVIAIGYGVLEAVEGYGLLRHRRW
                     AEYLTVVATALLVIPEVQELLKHPTGLKIGALLINIVIVVYLIIRLVRRRAT"
     gene            complement(5688..6074)
                     /locus_tag="VF788_12865"
     CDS             complement(5688..6074)
                     /locus_tag="VF788_12865"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8935055.1"
                     /translation="MSSAYPADIPADIPADVMGVEVVEYRPDARIVTVTGEVDVLTAP
                     ELAALLTAQLAVSQLVVVNLDGVRLLASAGLSVLFEVSELAIQEDRDLRLVCHSRTVN
                     LALEVTGLRERLPFADSVPDALNTVL"
     gene            6354..7418
                     /locus_tag="VF788_12870"
     CDS             6354..7418
                     /locus_tag="VF788_12870"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjD/YihY/BrkB family envelope integrity
                     protein"
                     /protein_id="HEX8935056.1"
                     /translation="MDNDGVAPTTPRGASRERPPARRVIERLDDYQQHHRWVGLPLAV
                     VYKFSDDQGTYLAALITYYGFASLFPLLLLLVTILGSLLRGDPGLQQQILHSALRDFP
                     IIGDQIGQNIHSLHGSVAAVVIGILGSLYGGLGVTRAGQYALDTVWAVPRAARPDTLR
                     ASLRGLTLLLVLGTGLLATTALSALTTGADAYGATLGVGLRITATLLAVSVNTALFIA
                     AFRLLTTRNIGIDQIRTGAIAAAIAWQALQELGTYYLAHELKGASATYGLFGIVLGLL
                     AWIYLAALIVVFCAELNVVRAKHLWPRSLLTPFTDNVELTPADKSAYTSYAQAEQHKS
                     FENIQVTFPPPSTDREQPHE"
     gene            7662..7925
                     /locus_tag="VF788_12875"
     CDS             7662..7925
                     /locus_tag="VF788_12875"
                     /inference="COORDINATES: protein motif:HMM:NF025385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4235 domain-containing protein"
                     /protein_id="HEX8935057.1"
                     /translation="MLKMWSRLLGLLIGVACRIAAGAIHTQVWRLVTGAGDAPQATGQ
                     DHGWWEVPVAAGVRALSPEWSKARPIVAQPLGTASSPGTWPGK"
     gene            7922..8404
                     /locus_tag="VF788_12880"
     CDS             7922..8404
                     /locus_tag="VF788_12880"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEX8935058.1"
                     /translation="MSPVSALAATLTAAAIAAPVATQTPLSAPQPAAAATPPSQAASA
                     TPCAATAKACVLLSRSEAWLSDGHGHITYGPVPIAGGTPAYPTPTGAFHVLSKDANYH
                     STEFHNAPMPYSVFFYPGDAFHADNVHHKSHGCIHLTMSDAKIFFTVLHVGDEVQILP
                     "
     gene            8894..9619
                     /locus_tag="VF788_12885"
     CDS             8894..9619
                     /locus_tag="VF788_12885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935059.1"
                     /translation="MDASLRCMTLLRVGVGGACIVSPRRVASAAAGRPAVTLACVFTR
                     ILGVRQLVQAALTVTTPDLMTPLRGAVIDGLHAATMVLLAAVSRRHRRAALVSTTMAA
                     TFCAVGMVRARDHRGRPAARSEAATAPDPPLTATMPQPALREEAFPVPQQHAERESEA
                     RRQERPRDDNRFGLGLDDDRNLEWAKLLAGVLSMVALVAMLITTQFRAPNPVATAVLA
                     VLVIGLGLALGARVVRRRADQHE"
     gene            9879..11675
                     /locus_tag="VF788_12890"
     CDS             9879..11675
                     /locus_tag="VF788_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-requiring protein"
                     /protein_id="HEX8935060.1"
                     /translation="MSVPTVADHLLSRLRKWGVDTVFGYPGDGINGLLAAWGRAENQP
                     QFVQARHEEMAAFEAVGYAKFTGRLGVCAATSGPGAIHLLNGLYDAKLDHVPVLAIVG
                     QTNRSAMGGSYQQEVDLLNLFKDVASDYVQMVTVPEQLPNVLDRAIRTALARRAPTAI
                     ILPADVQELDYSPPTHEFKMVPSSLGISWPEVAPDSGALRHAAEILNAGRKVAILAGS
                     GARGAATELEQVAELLGAGVAKALLGKDVLSDELPYVTGSIGLLGTRPSYEMMRGADT
                     LLTVGSSFPYTQFMPEFGQARAVQIDIDPTMIGMRYPYEVNLVGDAATTLRALLPLLN
                     RKDDRSWRESIESDVTRWWETMVMQAGVEADPINPMRLFAELSPRLPDDAIVTADSGS
                     AANWYARQLRFRGSMRGSLSGNLATMGPGVPYGIGAKFGCPDRPVIVFAGDGAMQMNG
                     LAELITIKRYWEQWSDPRLIIAVLHNDDLNQVTWEMRAMAGAPKFVESQSLPDVDYAG
                     FAVGLGLQAIAVDKPGDIAPAWDNALSASRPTLLDVRCDPNVPPIPPHATFDQMTDAA
                     KALFAGDEDRWGVIKEGVKTKLQEFLPHRDSR"
     gene            11806..12069
                     /locus_tag="VF788_12895"
     CDS             11806..12069
                     /locus_tag="VF788_12895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935061.1"
                     /translation="MITAPIESLAVTVYTVPTDAPEADGTLTWSSTTMVLVEVRSDEI
                     CGTGWTYGPAACAQVIIDQLADVVLGSDARRGWGVRWDGRGSA"
     gene            12029..12808
                     /locus_tag="VF788_12900"
     CDS             12029..12808
                     /locus_tag="VF788_12900"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEX8935062.1"
                     /translation="MGGAFDGMVEAVRNAGRSGLVGYAISAVDVALWNLKARSLGLPL
                     HRLLGAVRGEVPVYGSGGFTSYDDEQLRTQLAGWVYGQHIPRVKIKIGESWGIQVARD
                     LARMAQARDAVGPDVGLFVDANGGYDRKQAIRVIRAAGDLDIRWFEEPVSSDDLAGLR
                     EVRDAVAPDVTAGEYGSDLTYYRRMCAAGAVDCLQADVSRCGGITEWLRVAAVAAAHQ
                     LEISGHCALHVHAAMATPNLRRKVASRYQVGPTVCRERNPN"
BASE COUNT         2331 a         4216 c         4147 g         2203 t
ORIGIN      
        1 ctggcgacca caggaaatcc gtggctgact ggaccatatg ggcgcaatgc agacgtcttg
       61 gatctatgga tgcacgtcgc attgtaatca ttcgccgctg gacgcgcagc gatgccgaga
      121 acaccaagaa ccgcaccggt ccacgccccg aaccatcact catggtcatt atgttcaatt
      181 gtcttgcgag aggatgagcg ttgtatacgg gccgatacta aggtttcctg accatggcaa
      241 cccgtctcgg ggctgcggcc aggcggtgca gtcaagcgag acatgcccac cgaagtcgtg
      301 gtcataaccg gaccagtcgc tgttaaaccg cacccgccag agccccggcc gaggaaaacc
      361 gatcgtgtaa gcgtcatagg cgcggttggc gaagttgagc aggacaatgg tgtcgtcttg
      421 cggtccaccg tccttccacc ggtggtaggc caccaccttg tccacatcgt tgaggtggtg
      481 cacttgtacc ccctcgcccc ggagcccccg ggtatgccca tcaaggtccc gccgtaagcg
      541 gataagatca cggtagagcg cccagatgcc ggcgaaggtg tcttttttga cccagtccac
      601 cggccgggag tctgcaaacc acaggttttc caggaactcc tggccttgaa acagcagcgg
      661 gatacccggc gcggtgagca ccagggccgc gcccagagtc gagcgtttct tcgaccacca
      721 gctgtcggca tgcccgggat cgatcgcttc cgggacccgc tgaccgccgt tggcatcggc
      781 atcatgagac tcggtgaaca ccacccgggt cagtgcgtga ccgtcgtact gccgagtgat
      841 cgccgcggcc accccagcca tgctgcgggc cgcgtcctcc ggggtgagca tcgcttgacg
      901 gacctgcacg acgaaatccg gatcccattg ggcggaaaaa cccgcgcccc cctccgcggt
      961 gggcttggtg atccactcgt tgttccgcat gtcctcagcg atgcggatct tccaaggctg
     1021 ggcggtggtc acatcgtcgt tgatggcttg cagcagccgc cacccgtcgg ggatgtcctg
     1081 gccgggatcg ctgccgccag tggcgttgcg gatagaggcg gtggcatcca ggcgcaggcc
     1141 gtcaagccgg taggtgccca gccaggaggc ggcgttgtct cggagatact ggcgtacctg
     1201 cgggcggccg taatcgggtc gcgagcccca gccggtttcc gcgcgccagt cctggtagaa
     1261 atagatcccg cccccattgt tttcatacca gccatcaaat cgccataaat cgtgatcgag
     1321 gtccccggga ccgagatggt tgtaaaccac atcgagcagc accgcgatcc cgagctcatg
     1381 cgcggcgtgc acgaactcct tgagagcatc cggtccccca taggagctct cgaccgcaaa
     1441 tggcagcgcc gggttatagc cccaggagcg gtccccggcg aactccgcca ccggcagcag
     1501 ctctaccgca gtgacaccca gctggcgcag gtacggcaac ctggcggtgg cctccaccag
     1561 attcccgacc tggccatcca cggcgggcgc gaaggtcccc acgtgtagct catagatgac
     1621 gagctcgtcc caggaggggg accggtaatc ctcttccgcc cagacgaacg cggcctcgtc
     1681 atagaccagt ccgtgaccgg cggagttggt cacatgccgg gcatacgggt cgatcctcag
     1741 cagtgtctgg tcctgccagg tgagcgcata caggtagccg tcccctgctc ctacctcagg
     1801 cacatccgcg gaccagtagc cgccctcctc ggccatcaac gccactgtct gaccggccgc
     1861 tgcgccgctg agcagctgga ccgacacctg ggaggcgttg ggcgcccaga cccgaaaggt
     1921 ggcaccaccg tcgaacggcc acgcgccaat gccagggcgt tgcgagactc ccaccatccc
     1981 tcccctctca gcctccgcga gctgcgtccc acgcagcgcc gcctcgcacc aacagtgtca
     2041 ccgcgacggc gtgccgtcac gtgtgccacc gttaccgcgc agagccctac actcaccgcc
     2101 gtgacggcgc cgggttctcg ccgccacggc caccgccggg gagacgatgc tgtcggctca
     2161 aagcgtttca gctggagagc ctgcgtgcgg gtcggcgcaa agatccgatc agctttagat
     2221 gacctggagc agggcctgca tttcgctgat ctgagcttgc tgcgtgctga ggatctgttg
     2281 ggcgaggttg cgggtggtgg ggttgctgcc ttgagtcagc tcggtctggg acatgtccac
     2341 cgccccctgg tgacggacga tcatcatctg gagcaacatc cggtcgaacc cagcgccact
     2401 caccgtcccg ggcacctgac cgttgcccgt gccgccgacg gtgctggtgg cggtcggggc
     2461 cggtatcccc cactcggtga gcagggcgct catctgctgg gtttgcgggc tttgttcggc
     2521 ctcgattcgg gtgacgagat ccttgacctg cggtgagatc gcttggttgc gtgcgctctg
     2581 cgacatcgtg atggcccggg tgtggttgag gatcatgttc tgaataaaga cgacgtcggc
     2641 ttggttgtgc ggctgctggg tagcggccgg tgcgcggctc gcggtcggcg gtggtggggc
     2701 tacgggattg gtcttgctgc cgcacccggc gagtagcccc ccggcggcgg ccgccgcggc
     2761 gagcacgccg gccagtctgt ggatacgcat ggttggtcgg tctccttcgc tgaagtccca
     2821 tgctgcgggc acggatcaga acgcttcacc aagcgaaacg agatgatcac gccggtgaga
     2881 cgcaccgagc accggcccgt cacgaactga acaagcccga ggtggcgagc cgcgacgatc
     2941 agcccaccat ctggacctgc tgcgggcacc gcggcgacct tgagcaaggc ctctcgcggc
     3001 gcatcacgca ctgccggtgg actaccggga tgctcctcag cggcgtgggc gccactcaca
     3061 ccaaccgcca gctagcggct ttcagacaga gtcccgcgct tgtgcccgtg ggtcggtcaa
     3121 cggtgaccgt ttcccgacct aatatcgaaa gggacttggc tcaacgcgac actaatctag
     3181 ttcagcggac cttgtagagc gcgattctgc gcctcccgag ccctggagca aaggagaaca
     3241 agccaacaac acggtgcaga cgatgatgag cgcagcaccg aacagagcga ggatcaacca
     3301 tgtcccggtc cggaggtgct cgtcgaacac cgcgatccca aacacaacgg agaccaaggg
     3361 atcgaccaag gtgagcgcgg gttgggaggc aaccaatggg ccagcttgca aggtcttctg
     3421 cagcaggaag aagaagcccg ggccgagcac gagtgcgaga taggtctgcg acgcccagag
     3481 cacgccactg atgcccgatg cgctgtaggc agccccgatt ccggcgacga gggcggcaac
     3541 caagccgaaa ccaatacctg tggccagccc gaggtaggcg gcgcggcggg tgccctcggc
     3601 gcggtagccg agcacaatga atacgctggc tacagcgagg ctgaccgcaa tgccagtgac
     3661 ccaacgcccg atggacgcgc ggtgtgggtc accgccgccg ggttgtagtg cataaagcat
     3721 gccggcgagc cccacgctca tccccgcaat ggcagtccat tcccgcgcat ggagccgact
     3781 gtggaacacc atgctggcca gcaacagggt gaatgccaac tccaccacga ggaccggctg
     3841 gaccactacg atcggcccgg tggccagcgc ggcggcttgg agcagaaacg cgacgacaag
     3901 cacagcgact cccgccaacc aggccggacg atggactagg tgccagaaca acgccaggcc
     3961 tctggcttgc ccctccggct tgtcccggtt ggctttacgt tgcagcactg atgccgtcgc
     4021 gttgcccagc gcagcgagga ccgcgagggc aacgctcagc atggacggct cgggacggtg
     4081 ccaccggaag tcgtcctggg catggtcatc atgatgccag tttcctggca ctgctcgctg
     4141 tcccgatcgt gggccggaca cgcgcgttca tcaacctgcg tacctgttct cccggaacat
     4201 attgtcattt cgtgatgatc cgaatacgca ggtggactgc cgttggtggg gtagcgctga
     4261 tcctgatcat ggctggcgcg tcagcggcga ccggggatac gacgaggcgg gacgttgacg
     4321 gtgatgacca cacctcgtgg taactcgtcg agctggagca gcgagctggc cagcttcgtc
     4381 atcgctgggc tgggacgcta cctgctggcg ttactggccg ccttgatcat cgcagggcac
     4441 ctggtctggt tcgccacccg gcgtcgtacc cagctgggct atctcgccgg cgtcgggctg
     4501 gggatataca aggccgccgg acccgggttg gtcggcgact acggcgtcgc ggaccccaaa
     4561 cggccgctgg gccgggccgc cgcagtggtg tggaccatcg tgggcgtcag cttcgtctcg
     4621 ctgttcaccg cagccctggc caaccatctg accgtccaga acatcgaaag caagatcacc
     4681 ggggtgcagg acctgagcgg ggggaaggtc acgaccgtca ccggcagctc agccgcaggc
     4741 tacctgacag cccacgccat caccttcacc agcgtcccca ccatcaacga cgcctaccgg
     4801 cagctagatt ccggcagggt cgatgccatc gtgttcgacg ctccagtcct gcaacaccac
     4861 atcaagctca ccggcagcac caacgagacc gtggtcggtg gcatcttcgc gcgcgagaat
     4921 tacggcatcg cgctaccgac cggttcggcg ctacgcaaga agatcaacga gacgttgctc
     4981 gacatcaccg cagacggcac ctacgacgag ctctacgcca agtatttcgg ggacgcgaac
     5041 tccggttgaa ctcggagttc ggcttggata cggcaaaaag gggccgcaga ggcatgacat
     5101 cgacaaatcc gatcactcta ggccaggata ctttcttcac acgccagccg ctgacgccat
     5161 tcgtccacgg atccagttaa gtggcgcgac ggcggaccag tcgaatgatt aagtagacaa
     5221 cgatgactat gttgatcagc agtgcgccga tcttcagtcc ggtggggtgc ttgagcagct
     5281 cctgaacctc agggatgacc aacaacgcgg tcgctaccac ggtcaggtac tcggcccacc
     5341 ggcgatgacg gagcaggccg tagccctcca ccgcttccaa cactccgtat ccgatggcga
     5401 tcacgccgtc ccgctgcgct cggcgcggtc ctaaccctgc caggtgggag atgagccgac
     5461 cggtctcgtt gtgactgggg tcgagcccga cccgcccaat gaaacctcgc gcaagatcca
     5521 cccagtccgc gtgggcatgg gtcagcagaa tcagaccgac accgatcagc aacaccgcac
     5581 gaagtactcg ctccactgcc agcaccggca acagccggct ccggtcctga ccgccggcca
     5641 tcaattttct aggtacgcgc gggaccggac agcgagagcc gcaggcatta gagcacggtg
     5701 ttcagggcgt ccggcacgct gtccgcgaag ggcaagcgct cccgcagccc agtgacctcc
     5761 aacgccaggt tgacggtccg ggagtggcac accaatcgca ggtcccgatc ctcctggatg
     5821 gcgagttcac tcacctcgaa caacaccgac agcccggcag atgccagcaa ccgcacacca
     5881 tcgagattca ccaccacgag ctgcgaaaca gccagttgcg cagtcagtaa cgccgccagt
     5941 tccggcgcgg tcaatacgtc cacctcacca gtcacggtga cgatgcgtgc atcgggacgg
     6001 tactcgacca cctctacacc catcacgtct gccggaatgt ctgccggaat gtctgccggg
     6061 taggcgctgc tcacggtcgg caccgtatag cgccagcccc aagacaggcg ccaggcggtc
     6121 aggtcagcat cgctgagcgg ttatatcccg tcgctgcgcg gcagcacgga tcgccggagc
     6181 agctcgctgc tactcagcgt ttatcctggc gtccgccggc cgtggtggcc aggggtgttc
     6241 agatgtggtc gaggcgagac agcgctgcta gggccagcag gtgcgggagc gtgcaacggt
     6301 gatggtgatc agggcgcact cgcatgacga gctcaatcat acactcgtgg atcatggata
     6361 atgacggcgt ggcgccgacg acgccccgag gtgcctcccg agagcggccg ccggcccggc
     6421 gggtgatcga gcgtcttgac gattaccaac agcaccatcg gtgggtaggc ctgccgctgg
     6481 cagtggtcta caagttcagc gacgaccaag gcacctacct cgccgcgttg atcacctact
     6541 acggattcgc gtcgctgttc ccgctgctgc tcttgctggt gaccatcctc ggttccctcc
     6601 tgcgcggcga tcccggctta caacagcaga tactgcactc cgcgttgcgg gacttcccca
     6661 tcatcggcga tcaaatcggg caaaacatcc actccctcca cggcagcgtc gccgcggtcg
     6721 tcatcggcat cctcggaagc ctctacggtg ggctgggagt gacccgagcc ggccaatacg
     6781 cgctggacac cgtgtgggct gtgccccgcg ccgcccgccc ggacacactg cgcgcctcgc
     6841 tccggggtct gacactgctg ctggtattgg gcaccggcct gctggccacc acagccctgt
     6901 ccgcattgac caccggagcc gacgcctacg gcgccaccct gggcgtcggc ctacggatca
     6961 ccgcgaccct gctggcggtg tcggtcaaca cggccctgtt catcgccgcg ttccggcttc
     7021 ttaccacccg gaacatcggc atcgatcaaa tccggaccgg agccatcgcg gccgcgatcg
     7081 cctggcaggc cctacaagaa ctcggcacct actacctcgc ccacgaactc aaaggcgcca
     7141 gcgccaccta cggcctgttc ggcatcgtgc tgggcctgct ggcctggatc tacctcgcag
     7201 ccctgatcgt cgtcttctgc gccgaactca acgtcgtccg tgccaaacac ctatggcccc
     7261 gcagcctgct cacccccttc acggacaacg tcgagctgac cccggccgac aaatctgcct
     7321 acacctccta cgcccaagcc gaacaacaca aatccttcga aaacatccag gtcaccttcc
     7381 ccccaccatc caccgatcgt gaacaacccc acgagtaacc gatcgcgcac gatttcgtga
     7441 tcaggacgta acaggttctc tgcgtgtcat aaccgcgggg gatcagaagg ccacgacata
     7501 gtcgtcgcat gcgccgggcg tcctcacgtc ggtagggccc caggagacag tggccagtgc
     7561 caatcgatgg cgacgcaacg gccgttgtgc actgcggcgg gcgcagtggg gctgttggtg
     7621 ctgcgacgcc tgctgcaggg aaacgaaacg gctgaggggt catgctgaag atgtggtcta
     7681 ggctgctggg ccttctgatc ggcgtcgcgt gcaggatcgc tgcgggtgcc atccacaccc
     7741 aggtctggcg gttggtcacc ggtgcgggtg acgcaccgca agccaccggc caagaccacg
     7801 gctggtggga ggtccccgtc gctgctggcg tcagggcgct gtctccggag tggtccaagg
     7861 cgcgtccgat cgtggcgcag ccactaggta ccgcaagttc acccgggaca tggcccggta
     7921 aatgagccct gttagtgcac tcgcggcgac gctaaccgcc gcggcgatcg ccgcgccggt
     7981 cgcgacccag acgccactgt ccgcgcccca gccggcggcg gccgccaccc caccatccca
     8041 ggcggcgtcg gcgacgccgt gcgcggccac cgccaaggcc tgtgtcctgc tctcacgcag
     8101 tgaggcgtgg ctaagcgacg ggcacgggca catcacctac ggcccggtgc cgatcgccgg
     8161 cggaacccct gcctatccca cgccgaccgg cgccttccac gtgttgtcca aggacgccaa
     8221 ttaccacagc accgagttcc acaacgcacc gatgccctac tcggtgttct tctaccccgg
     8281 tgatgccttc cacgccgaca acgtccacca caagtcgcac ggctgcatcc atctgaccat
     8341 gagcgacgct aaaatatttt tcaccgtgct ccacgtcggt gacgaggtgc agatcctacc
     8401 ctgaaggatc caatggtgag cgcccaccgc acgagtaaag gcctccagcc gtccgtcccg
     8461 acatcgtcat cgcccctcgc cgttatcgtc cgcagtgtgc gctgagctcg ctcaatctcc
     8521 cgggtctcgc gcatccgagt cttgacgaac accgtcagca acccaatgcg ccgcccggag
     8581 gcgagccagt aggtcacccg caccgcctga ccacccaggt gagggccatt gaggtcgaaa
     8641 acggaggcgg tgaggaggcc acgcagtcga tggtgcagct cgctgggttg ccttgcccgg
     8701 tgtcaggtca agcacctcgt ccccgcggtt ccggcgctgg gcagctcaga tgtcgccgca
     8761 taagcatgac gctcagaggg tcagcacgtg agaagcgcag gtcagtaccc cgcgtcgagt
     8821 tgtcgagcac accacgagct gtttgcacaa caaatgttgc ttggatgcaa ctattgcgta
     8881 ggatcgacta attgtggatg cgtcacttcg gtgcatgacc ctgctgcgag taggcgtcgg
     8941 cggagcctgc atcgtttccc cccgtcgtgt ggctagcgct gcggcaggcc gccccgccgt
     9001 cacgctcgct tgcgtcttca cccggatatt gggtgtgcga caactggtcc aagccgcact
     9061 caccgtcacc acccctgacc tgatgacacc gttgcgtggt gcggtcattg acgggctgca
     9121 tgcagcaacc atggtgctgc tggccgcagt gagtcgacgc catcgccgtg ctgcgctggt
     9181 gagcacgacg atggctgcca ctttttgcgc agttggcatg gttcgcgctc gtgaccaccg
     9241 tggaagacct gcggcgagaa gtgaggctgc caccgcgccc gacccgcccc tcacggcgac
     9301 tatgccccaa ccggccctac gagaggaagc ctttcctgtg ccacagcagc atgccgaacg
     9361 cgaatctgag gctcgtcgtc aggaacgtcc ccgggacgac aaccggttcg gtctcggtct
     9421 cgacgatgac aggaacttgg agtgggcaaa gctcctcgct ggggtgctgt cgatggtggc
     9481 gttggtcgcc atgctcatca cgacgcagtt ccgggcgccg aacccagtcg cgaccgccgt
     9541 gctggcagta ctcgtgatcg ggttaggact cgcgttaggc gcccgtgtgg tgcgccgccg
     9601 tgccgaccag cacgagtgaa tgtgcccggg aagtcgcgca tcgaatctgg ctgccacgga
     9661 aaggcgccgg caagcctcga tggctgagga ctcagggtgc tagcgccttg cggagttccg
     9721 gaactgatag cgccctgccg gctctaggac gggactgcgc gccaaaagct gtgacacggg
     9781 gcacaaaaat attttgtttg cgtaagcgcg atggttgcgg ggaacgctgc attcgcactg
     9841 ccaacacctg gtgagcccgt ggagttaagg aaggggccgt gagcgtgccg actgtcgccg
     9901 atcatctgct gagccgcctg cgcaagtggg gtgtggacac ggtcttcggt tatcccggtg
     9961 acgggatcaa tggattgctg gcggcctggg gacgggccga gaaccagcct cagtttgtcc
    10021 aggcccggca tgaggagatg gccgcgttcg aggcggtggg gtacgcgaag ttcaccggga
    10081 ggctaggggt ctgcgcggcg acgtcgggac cgggggcgat ccatctgctc aatggcctgt
    10141 acgacgcgaa gcttgatcat gtaccggttc tggcgattgt cgggcagacc aatcgtagcg
    10201 cgatgggcgg ctcataccag caggaggttg atctgctgaa cctcttcaag gatgtggcca
    10261 gcgactacgt gcagatggtc actgtgcctg agcagctgcc caacgtgctg gatcgggcga
    10321 tccgcacggc gctggcccgc cgggccccga ccgcgatcat tttgccggct gatgtgcagg
    10381 agcttgatta ctcacccccg actcatgagt tcaagatggt gccttcgagc ctcgggatca
    10441 gctggcccga ggtcgcaccc gattccggcg ccttgcgtca cgcggcggaa atcctcaacg
    10501 ccggtcgcaa agtcgcgatc ctggctggtt cgggtgcacg gggtgccgcc accgagctgg
    10561 agcaggtcgc ggagctgctg ggcgccgggg tggccaaagc gttgctgggc aaggatgtgc
    10621 tctccgatga gctgccctat gtgacggggt ctatcggatt gctgggaacg cggccgagtt
    10681 acgagatgat gcgtggggcc gacacgctgc tgacggtggg gtcgagcttt ccctacaccc
    10741 agttcatgcc cgagttcggg caggcccgag cggtgcagat cgacattgac ccgaccatga
    10801 tcgggatgcg ttacccctat gaggtcaacc tggtgggcga cgcggcaacc accctgcgcg
    10861 cgctcctgcc gctgctgaac cgcaaggacg atcgatcctg gcgggagagt atcgagtccg
    10921 atgtgacccg ctggtgggag accatggtga tgcaggccgg cgtcgaggcg gatccgatca
    10981 acccgatgcg attgttcgcc gagctgagcc cgcggctgcc cgacgatgcg atcgtcaccg
    11041 cggactcagg atcggcggcc aactggtacg cgcggcagct gcgtttccgc ggcagcatgc
    11101 gcgggtcgct gtcggggaac ctggccacaa tgggccctgg tgtgccctat gggattggcg
    11161 cgaaattcgg ctgcccggac cggccggtga tcgtgttcgc cggtgacggg gcgatgcaga
    11221 tgaacggcct cgccgagctg atcaccatca aacggtactg ggagcagtgg tcggacccaa
    11281 ggctgatcat cgccgtgctg cacaatgatg acctgaacca ggtcacctgg gagatgcgcg
    11341 cgatggccgg cgcccccaag ttcgtcgaat cgcagagcct gcccgacgtg gactacgccg
    11401 gattcgccgt gggcctcgga ctgcaggcaa tcgcggtcga caagcccggc gatatcgctc
    11461 cggcctggga caacgcgctg agcgccagcc ggcccacgct gctggacgtg cgctgtgacc
    11521 cgaacgtacc gccgatacca ccgcacgcca ccttcgacca gatgaccgac gccgcgaagg
    11581 ccctattcgc cggtgacgag gatcgctggg gcgtgatcaa agagggtgtg aagaccaaac
    11641 tccaagagtt cctgccacac cgcgattcgc gatgagcccc aggaccaaga cctctttctg
    11701 ggatagggaa tcagcgctga ggccggtcag ccgtagtcgg gcttatttcc ggaccgggcg
    11761 gatcgtgctg cttgccgagg gcgggaccga cccagagggt gcgccgtgat cacggcaccg
    11821 atcgagtcac tcgcggtgac ggtctacacc gtcccgaccg acgcgcccga ggcggacggg
    11881 actctgacgt ggagttccac cacgatggtg cttgtcgagg tccgtagcga tgagatctgc
    11941 gggacaggct ggacctacgg cccagctgcc tgcgcccagg tgatcattga tcagctcgct
    12001 gatgtcgtgt taggcagcga tgctcgacgt gggtggggcg ttcgatggga tggtcgaggc
    12061 agtgcgtaac gccgggcgat cggggttggt gggctatgcg atctcagcgg tggatgtcgc
    12121 gctgtggaat ctcaaggccc gctcgctcgg gttaccgctg caccggctgc tgggcgcggt
    12181 tcgcggcgag gtgccggtgt acggcagtgg cgggttcacc tcctacgacg atgagcagtt
    12241 gcgcacgcag ctcgcggggt gggtctacgg gcagcacatt ccccgggtaa agatcaaaat
    12301 cggcgagtcc tggggtatcc aagtcgcccg agacctggcg cgcatggcgc aggcgcgcga
    12361 tgcggtgggg cccgacgtgg ggttgttcgt cgatgccaac ggcggttacg accgtaagca
    12421 agcgatccgg gtgatccggg ccgctggcga cttggacatc cggtggttcg aagaaccggt
    12481 gtcctccgat gacctggctg ggctgcgcga ggtccgcgac gccgtcgcac cagacgtcac
    12541 cgctggcgag tacggctccg acctgaccta ctaccgccgg atgtgcgccg cgggtgcggt
    12601 ggactgcctg caggccgacg tgtcccggtg cggaggtatc accgaatggt tgcgcgtcgc
    12661 tgccgtcgcg gcggcgcatc agttggagat ctccgggcac tgcgcgctgc acgtgcacgc
    12721 cgcgatggcc acaccgaacc tgcggcgcaa ggttgcctcc cgctaccagg tcggcccgac
    12781 ggtgtgccgt gaacggaacc cgaattgagg aggtgcccag tatgagcgga ccggtagagc
    12841 aggtcgtggt ggtcacttgc gccagcggcg ggatcggccg cgccgtcacg caggcct
//
LOCUS       DASVXZ010000611         1526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_247814, whole genome shotgun sequence.
ACCESSION   DASVXZ010000611 DASVXZ010000000
VERSION     DASVXZ010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247814"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..447)
                     /locus_tag="VF788_12905"
     CDS             complement(196..447)
                     /locus_tag="VF788_12905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935063.1"
                     /translation="MALRQSDLSFRRPPATGPLGRYPGRTLTGKSIAASRTHQIDHTM
                     LAIGYQPGDLVAIVGGSPPTTEDCTNLIRIHRLGEEDFR"
     gene            1057..1467
                     /locus_tag="VF788_12910"
                     /pseudo
     CDS             1057..1467
                     /locus_tag="VF788_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          308 a          477 c          505 g          236 t
ORIGIN      
        1 cctgggtggt cacgatcgtc ggccggtcgg cgtaggtgcg atcccggccg gcatcggcac
       61 ctacctacct tgcgtagcgg attatctacc tcaggtagcg ggcatccact gtgaggcagg
      121 tcatgacgct aacacctgct cgggtctacg tcttcccgag tttccacggc agcgtgcatc
      181 gaccgatagc ccctgtcagc gaaagtcttc ctcgcccagg cggtgtatcc ggatgaggtt
      241 agtgcagtcc tcggtggttg ggggagaccc gcccacgatc gccactagat cgcctggctg
      301 gtagccgatc gccaacatgg tgtggtctat ctggtgtgtc ctggaagctg cgatggactt
      361 gccggtgaga gtccggccgg ggtagcggcc aagcggcccc gtagctggtg gccggcggaa
      421 ggagagatcc gactgtcgaa gcgccatgac aaagtcgcca tgggcggcga gcaagtggtc
      481 ggtccgtacg cgaggaatcc tgtaaccgcg tcgtgaccca ccccgcatag cgggagacaa
      541 acgggtgccg agcccggcag ataggggcga aggccatgga cggtgtgaag accttggatg
      601 tgcagcacca gagacccgtc ggcgtaatgg gagcggaacg atcacacagc ccatcgtgga
      661 acaggagaga tccgtctcga caccggcaac aagggcccgg cgggtgccgt cgtcgggtgc
      721 tccggtaaca gcgaaaccta taagcgtgga tgcgcgaaat ggtggagtgt cgagcggaag
      781 tcggaggagg gagtagtagc gaggatcggc gtggacaaca caacccgccg tagcgaaggc
      841 cctctagctg ggtgcgcgac cgcaacggcc aagacggaat ctacccgtcg aggagcctcg
      901 tgagtcgctg ggaccggtgg ccaacccgag tggcgtcggg gaatgcggcc ggtcgactgc
      961 ccaggggaaa gccggatgag ggagaacctc atgtccggtt tgggaagagg gagcaggaaa
     1021 cggggcgaca accaccgcgc ctgctcccta cttcactacc gggcggtcga ccagttcggg
     1081 caggtcatcg acgtgttggt ctcccagaat cgggatctgg cggcgactca ccgattcttc
     1141 acccgtgccc tcgagcacgg gccatccccg accgaggcca tcaccgacaa ggcagcggtc
     1201 tacccgcccg tcctcgagga gatcgccccg ggcgcctggc accacaccga gccctacgcc
     1261 aacaacagga tcgactccga ccacggccac gtgaagtccc ggctccggcc gatgcgcggg
     1321 ctcaaacagc tccgctgcgc acaagtgatc agcgccgggc acgcgttcat tcagaacctc
     1381 cgccgcggac actacgaact cgggaccgaa gaaacagcaa acctacgggt cctggctgcc
     1441 ttcgacgaac tgaccctggc gatctgacca ctcgagcagg acgaggacgc atcacctcag
     1501 cctgcccgga tcttgccctc tagcaa
//
LOCUS       DASVXZ010000612         2323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1647255, whole genome shotgun sequence.
ACCESSION   DASVXZ010000612 DASVXZ010000000
VERSION     DASVXZ010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1647255"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..427
                     /locus_tag="VF788_12915"
     CDS             <1..427
                     /locus_tag="VF788_12915"
                     /inference="COORDINATES: protein motif:HMM:NF026109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxidoreductase C-terminal domain-containing
                     protein"
                     /protein_id="HEX8935064.1"
                     /translation="EGIYAAGDVANHYHPVFERRIRVEHWQNALNQGPAAAQSMLGQG
                     EPYDEVPWFWSDQYDYNLQYAGFHTEWDDLVVRGSMEERNFVAFYQKDERVLAAVAVN
                     RGKDLRRSMRLIKAQRPVDATKLQDPDVDLRALVDTVHK"
     gene            505..564
                     /locus_tag="VF788_12920"
                     /pseudo
     CDS             505..564
                     /locus_tag="VF788_12920"
                     /inference="COORDINATES: protein motif:HMM:NF020917.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(682..2205)
                     /locus_tag="VF788_12925"
     CDS             complement(682..2205)
                     /locus_tag="VF788_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8935065.1"
                     /translation="MDSITEVVVVGAGPTGLMLAGDLARAGVGCTVLERRSEETNLTR
                     AFAVHARTLEMLDARGLADDLVATGTRVGALRLFGKLEVDLSQLPTRFPYVLVTPQYQ
                     TERVLEERASALGARIVRGAEVLDLHQDNDGVEVVARYKDGTLGTQRAAYAIGTDGVR
                     SKVRQALALPFPGHSAIQSVMLADVRLGEAPEDVLTVNAVGDGFVFVAPFGDGWYRVI
                     AWDRRRELPDDAPLELEEIREITQRVLGTDYGMHDPRWMSRFHSDERQIPHYRVGRVF
                     LAGDAAHVHSPAGGQGMNTGLQDAANLGWKLAAAVHGWAPDGLLDSYHAERYPVGRAV
                     VRGSGALLRLTLAQSPATRAVRWLLANFFGRFGSPPAIVSRAISGIGISYAAPRGEHR
                     LVGRRAPDVRLTSGEVGQTRLYETLRGGRFVLLTPAGAGAAIGGRWAGRVDLATPADA
                     TLPMVLVRPDGYVAWATDETAPASRDAALRKALTRWYGQPASDNTGGSRAQLLQTNE"
BASE COUNT          421 a          767 c          748 g          387 t
ORIGIN      
        1 ggaggggatc tacgcggcgg gtgacgtggc caaccactat cacccggtgt tcgagcggag
       61 gatccgcgtg gagcactggc agaacgcact gaatcagggc ccggccgcgg cccaaagcat
      121 gctgggccaa ggtgagccct acgatgaagt cccctggttc tggtccgatc agtacgacta
      181 caatctccag tacgccggtt ttcacacgga gtgggacgat ctcgtcgtgc ggggcagcat
      241 ggaggagcga aacttcgtgg cgttctatca aaaggatgag cgggtcctcg cggccgtggc
      301 ggtcaaccgg ggaaaggacc tgcgccgttc gatgcggctg atcaaagccc aacgcccggt
      361 cgacgccacc aagcttcagg atcccgacgt cgacctgcgc gcgctcgtgg acacggtgca
      421 caagtaattt ctccgtcaaa gagatatgga tgactatggc tgaacaagcg aagattgctg
      481 ccctcgacgg accgtacgta cctggtgaag gatccggttg tcgttgatgc cgagggcaac
      541 gagttccgct ctgagcacga gacgatagcg ctgtgtcgtt gcgggggagc gacgacgaag
      601 ccgttctgcg acggcaccca ctcgaagatt ggcttccagg tggcggagag ctgtgtactt
      661 tggggcatgc tcggtacctc cttattcgtt tgtctgcagc agctgggccc ggctgccgcc
      721 cgtattatcg gacgcgggct gaccgtacca gcgagtcagt gccttacgca acgccgcatc
      781 ccggcttgcg ggggcggtct catctgtggc ccaggcgaca tacccgtccg ggcgtaccag
      841 caccatcggg agtgtcgcgt ctgcgggggt cgccaggtcg acccggccgg cccatctgcc
      901 cccgatggca gcccctgcgc ccgcaggtgt gaggagcacg aacctgccgc cccgcaaggt
      961 ctcataaagc cgcgtctgcc ccacttcccc ggatgtcaac cggacatcgg gcgcccgccg
     1021 tccgaccagg cggtgctcgc ctcggggcgc agcgtatgag atgccgatgc cggaaatcgc
     1081 ccggctcact atggcgggag gcgagccaaa ccggccgaag aagttggcga gcagccagcg
     1141 caccgcacgg gtggcaggtg actgggccag ggtgagcctc aacagcgcac cgctgccgcg
     1201 cactacggcg cgtccgacgg gatatcgctc ggcgtggtag ctgtcgagca ggccgtccgg
     1261 cgcccatccg tgcacagcgg cggcgagctt ccatccgagg ttggccgcgt cctgcaggcc
     1321 ggtattcatc ccctgacctc cggctgggga gtgaacgtgt gcggcgtcgc cggcgaggaa
     1381 cactcgcccg acccggtaat gcggaatttg gcgctcgtcg ctgtggaatc gggacatcca
     1441 gcgggggtcg tgcatgccgt agtcggtgcc cagcacacgc tgggtgatct cgcggatctc
     1501 ctccagctcg agcggcgcgt cgtccggcaa ctcccggcgc cggtcccagg cgatgacccg
     1561 ataccacccg tcgccaaacg gggcaacgaa tacaaagccg tcaccaaccg cgttgacggt
     1621 cagcacatcc tccggcgcct cgccgagtcg cacgtcggcc agcatcaccg actgtatggc
     1681 ggagtgaccc gggaacggaa gcgcgagggc ctggcgcact ttgctgcgca ccccatcggt
     1741 accgatggcg tacgcggccc gctgcgtgcc caaggtcccg tccttatatc gcgcgaccac
     1801 ctcgacacca tcgttgtctt ggtgcagatc gagcacttca gcaccacgca caatccgagc
     1861 cccgagcgca ctggcacgct cctcgagcac ccgttcggtt tggtactgcg gagtcactag
     1921 cacgtacgga aatctggtgg gcagctggga gaggtccacc tcgagcttgc cgaacaagcg
     1981 tagtgcacca acccgggtac cggtagccac gaggtcgtcg gcgagacccc gcgcgtcgag
     2041 catctccagc gttcgggcgt gcacggcgaa cgcgcgggtc agattggtct cctcagagcg
     2101 gcgctccagt accgtgcagc cgacgccggc tctggcaagg tcgccggcca gcatcaagcc
     2161 agtcggacct gcccctacaa ctaccacctc ggtgatcgaa tccatcaaac tactcctttc
     2221 tatgcaaaag cctcacaagc agtcccgctc aagcagcgca attctcgact cagggcctgc
     2281 tggatggtgg gagcctgcac cgctaccttg aagcgcgcct ttc
//
LOCUS       DASVXZ010000613         2061 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1591734, whole genome shotgun sequence.
ACCESSION   DASVXZ010000613 DASVXZ010000000
VERSION     DASVXZ010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1591734"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VF788_12930"
     CDS             <1..366
                     /locus_tag="VF788_12930"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX8935066.1"
                     /translation="YLLGGMDLAFECTGASAGLNTALRSLRAGGTVVASGMPAGGVDL
                     APLWYRELNLVGAYASAIGEEPSRGDFPEAIALATAAPLDGYVGMKYPLDQWRDAVDH
                     ASAAGRLGTIKVVFAPSGG"
     gene            429..2003
                     /locus_tag="VF788_12935"
     CDS             429..2003
                     /locus_tag="VF788_12935"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEX8935067.1"
                     /translation="MGRPGFVLDVDERTPPLLMHEGEGFRLERLPLGSRVIYPPESLP
                     AIVDLESAIRHALVHPHGSDPLPQLLRRGMRLTIVFDDLSLPLPPMRTPDVRQRVIEQ
                     VLEMAATAGVDDVELIAANSLHRRMTPAELKRTVGERVFRAFHPDHLRNHDAEDPDSL
                     AHLGTTPHGEDVEINRRAAESDLIVYVNITLTAMNGGSKSVSVGLASYNSLRHHHNVH
                     TLRHSRSFNDPANSAMHHSYDRMADVIGGHVPVFTIETTLNNEPFPASLRFLTRREWE
                     WNLTDQASYLAVKRSNDLATTKLRRRIWQTTEAPYGVTGVHAGAPSQVHPHTLAAVHR
                     QQLTEVRGQADVAIFGLPYICPYNVNSIMNPILVMSLGLGYFFNLYRGQPIVRQGGVA
                     IFYHPMPHEFHPVHHPSYIDFYELLTETTDPVMLETKYEKQFATDPWYVHLYRNSYAY
                     HGVHPFYMWYWGAHAIQHLDDVIFVGGDRSTTGRLGFRAASTLADALELARETVGSDP
                     QISYLHAPPMVLADVR"
BASE COUNT          372 a          690 c          649 g          350 t
ORIGIN      
        1 tacctgctcg gcgggatgga tctggccttc gagtgcaccg gtgcttcggc ggggttgaac
       61 accgcactgc ggtcgctgcg agctgggggc acggtggtcg catcgggcat gcccgcaggc
      121 ggggttgatc tcgccccatt gtggtaccgc gagctgaacc tggtcggggc ctacgcctcc
      181 gccatcggcg aagagcccag cagaggtgac ttcccggagg ccatcgcact agcgacggcc
      241 gcacccctgg atggatacgt tggcatgaaa tatccactgg accagtggcg tgacgcggtc
      301 gatcacgctt ccgcagccgg ccgactaggc accatcaagg tcgtcttcgc acccagcgga
      361 ggttaagagt caacagaggt tagagccgcc ggaggagcgc agcactgcag gtaggggcag
      421 gagagaatgt gggcagacca ggtttcgtgc tcgacgtcga cgagcggacc cccccgttgc
      481 tgatgcacga gggtgagggg ttccggctgg agcgtctgcc tctggggagt cgggtgatct
      541 acccgccaga gtcactgccg gccatcgtcg acctcgagag cgcgatccgc catgccttgg
      601 tgcatccgca cggcagcgat cccctccccc aactgctccg tcgcgggatg cggctgacca
      661 tcgtgttcga cgatctgtcc ctgcctctac cgccgatgcg gacaccggac gtccggcagc
      721 gggtgatcga gcaggtgctg gagatggccg ccaccgccgg ggttgatgat gtcgagctga
      781 tcgctgccaa ctcactgcac cggcggatga ccccagcaga gctcaagcgc accgtcggcg
      841 agcgcgtgtt ccgcgccttt caccccgacc acctgcgcaa ccacgatgct gaggacccgg
      901 actccctcgc gcacctgggc actacgccgc acggcgagga cgtcgagatc aaccggcggg
      961 ccgccgagag cgacctgatc gtctacgtca acatcacgct caccgcgatg aacggcggct
     1021 cgaagtcggt gtccgtgggg ctggccagtt acaacagcct gcgccaccac cacaatgtgc
     1081 acacgctgcg gcactcgcgc tcgttcaacg atcccgccaa ctccgccatg caccactcct
     1141 acgaccggat ggctgatgtc attggcggcc atgtgccggt gtttaccatc gagaccacgt
     1201 tgaacaacga gccgttccca gcttcgctgc gcttcctcac ccggcgcgag tgggagtgga
     1261 accttaccga ccaggccagc tacctagcgg tcaagcgaag caacgacctg gccaccacaa
     1321 agctgcggcg gcggatctgg cagaccaccg aagcgcccta cggcgtcacg ggggtgcatg
     1381 ctggcgcacc gagccaggta catccccaca ctctggcggc cgtgcaccgt cagcagctca
     1441 ccgaggtgcg cggccaagcc gacgtagcga ttttcggctt gccctacatc tgcccgtata
     1501 acgtgaactc gatcatgaat ccgatcctgg tgatgtcact gggactcggc tacttcttca
     1561 acctctatcg gggccagccg atcgtgcgcc aaggcggtgt ggcgatcttc taccacccga
     1621 tgccgcacga gttccacccg gtgcaccatc cgagctatat cgacttctat gagctgctca
     1681 ccgaaactac cgacccggtg atgctggaga ccaagtacga aaagcagttc gcgaccgatc
     1741 cctggtacgt ccacctgtac cggaacagct acgcctacca tggcgttcac ccgttctata
     1801 tgtggtactg gggtgcgcac gccatccaac acctggatga cgtgatcttc gtcggtggtg
     1861 accggtcgac gaccgggagg ctgggcttcc gcgccgcgtc caccctggcc gacgcgctgg
     1921 agctagctcg ggaaaccgtg gggagcgatc ctcagatcag ctatctgcac gccccgccga
     1981 tggtgctggc ggacgtgcga tgaaccggcc gacccgcagc ctgcgcgagg aggtgcggct
     2041 gctgcggcat ggccgggact g
//
LOCUS       DASVXZ010000614         3918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_426815, whole genome shotgun sequence.
ACCESSION   DASVXZ010000614 DASVXZ010000000
VERSION     DASVXZ010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426815"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(651..1010)
                     /locus_tag="VF788_12940"
     CDS             complement(651..1010)
                     /locus_tag="VF788_12940"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935068.1"
                     /translation="MAAATGKDAVVPAPHPPEFRRRAIELARVGERSIAVVAKQLSIS
                     ESCLRDWLAQADADERGSDSRLTSAEKRELSALRRDKRRLEMENEILKRAAAYFARIF
                     SQISILTGPRTHRRRRC"
     gene            1328..2542
                     /locus_tag="VF788_12945"
     CDS             1328..2542
                     /locus_tag="VF788_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935069.1"
                     /translation="MTFNPLEQRGIPLDKQLRSWRELDVEPVDPDHSDPYTKCRIITM
                     NGIEIEALLFSHNFARICPDMEVKHKLAEIRYLEQQQQKVVNWLLPGSSSPLETTISY
                     EQVAVDLTAWVARMEPDPYLTQCYEFGVLEDFDHLYRYANLYEMLQHRKAEKIVDQLT
                     EVTPGRPTRYHHRHPIDNVRKPYDRSAAAPISKLHALTILSAEQQTMNFYLNVGPQYM
                     EPIARQLYQEIAMVEEEHVTHYESLLDPGETWWERLVNHEYNECYLYYSFMEQESDRK
                     VKAIWELHLNMELEHLHAACDLMRQHDGRDPAEVLAPELPNVLTFEPNKAYLRELLDT
                     QIDLTTLGTGFVSEAHERFQKMQDAVMGGEDPASDRVIDEHNSVFGTDYRIETEGPHP
                     RPELRQRSASKV"
     gene            2554..3138
                     /locus_tag="VF788_12950"
     CDS             2554..3138
                     /locus_tag="VF788_12950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX8935070.1"
                     /translation="MTQTAESAKVDAAHDVVEFLIGQHMQIRDLFTEVDKSTGKARRD
                     AFERLVKLLAVHETAEEQLIHPLVRVGVHGGGDIVGDRLSEEREAKEMLVRLEDVGPD
                     SNQFPLLLAKLRASVLMHAHNEEAYEFRYLRREVAASELQPLVSMVRAAEAVAPTHPH
                     PGVESAAANTAAGPLMSLFDRTKDMVREVMSTNR"
     gene            complement(3309..>3918)
                     /locus_tag="VF788_12955"
     CDS             complement(3309..>3918)
                     /locus_tag="VF788_12955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HEX8935071.1"
                     /translation="DGQHLKTLPSRLTSINLARLRAQGARPASPPPPARPSWAQLTAG
                     APVEIHRSVNAVGMVSIAGHYHSVGQQFAGRRITLRLETTVAHVIIDGVLTRTIPLTL
                     TPTQRARLQGARPPGPAPLLDQRPARVQRTVSCRGGTQIIGQRVQVGLRYAGQIVTIE
                     VDDTTLRVYDQRDQLIKNVPRTSRKEVRRHKAYGHTTNHTTA"
BASE COUNT          738 a         1180 c         1306 g          694 t
ORIGIN      
        1 acctccaaat ccatggtcaa acatttggcg tgaatagccg aggttgatgg gagcaatccg
       61 gtggcacgta gtcgttgccc gaacacccaa gaggcgaatt gagttccgtg gtcagagtgc
      121 aggatcgtcg aatcgatttc agggcgccga cgaagtgcag ccacgggcga gcgcatcgat
      181 gacgagctcg gtgcgcatgt gatcggcgat cgaccatccg atgatgagcc gggaataggc
      241 gtccatcacg gttgcgcagt acagcttcct tctcttgtcg gatgttctgt gatatctgtc
      301 aaccacagcc ggtttggtgc ctcgacggtg aagcggcggt ggaccaggtc gtcctcggtc
      361 gccggtccgg tcccgtcgcg acggtatcgg cgccggtaaa gaccctgcag accggcctgg
      421 cgcatcagcc gggcgacccg cttgtggttc accggcaacc ccagcccagc gtcaactcag
      481 cgagcacccg aggccagccg tatgtctcgc gcgaatcggc gtgcacttct tgaatatgtt
      541 tgagcaataa tgagttcgct tcatctctcg cgctgggcgg acggcccagc cagtcgtagt
      601 agcccgacct cgacacaccc aggactcgac aggccaccgc gacatcgata tcagcatcgg
      661 cgtcttcggt gagttcgcgg accagtcaaa atactaattt gggagaatat tcgggcgaag
      721 tacgcagccg cccgtttgag aatttcgttc tccatctcca agcgacgctt gtcacggcgc
      781 agcgcggaaa gctcgcgctt ctccgcgctg gtcaaccgag aatcgctacc acgctcgtca
      841 gcgtcggcct gagccagcca atcccgcaga cacgactcac tgatagacaa ttgcttggcc
      901 accacagcga tcgatcgctc gcccacacgc gccagctcaa tcgctcgacg acggaactca
      961 ggcggatgag gtgcaggcac gacagcatcc ttcccggtgg ccgcagccac ctcaggtcag
     1021 atgtccgtgc taaggggtca agctcatgac agctttgcga ccgcgctgat ggtcgccggt
     1081 gaggttgtcc gcggtcgcgg gtcggatggt caagatggtg tccagcccgg tgatcgccag
     1141 ggcacgggag gctcgccggc cgggccgctt gccggtggcc ccccagcccc ccggcaagcg
     1201 gcgacaacta actcctgcgc cgtgagcgat tcatcgtacg agcgaggacc tggccctgca
     1261 ggttcgaacg tctactcttc ggggtaggcc tagggggtct ccaactgcct accacgatgg
     1321 gaaccccatg acattcaatc cgctcgaaca acgcggcatc ccgctggaca agcagctgcg
     1381 cagttggcga gaactcgacg tcgagcccgt cgatccggat cacagcgacc cctacaccaa
     1441 gtgccggatc atcacgatga acggcatcga gatcgaggca ctgctgttca gccacaactt
     1501 cgcccggatc tgcccggaca tggaggtcaa gcacaagctg gccgagatcc gctacctcga
     1561 gcagcaacag cagaaggtcg ttaactggtt gttgcccggt tcgtcctcgc cgctggagac
     1621 aacgatctcc tacgagcagg tcgcggtcga cctcacggcg tgggtcgccc ggatggaacc
     1681 cgacccctac ttgacccagt gctacgaatt cggcgtgctg gaggattttg accacctcta
     1741 ccgctacgcg aacctttacg agatgttgca gcaccgcaag gcggaaaaga tcgtcgacca
     1801 gctcaccgag gtgacgccag gccggcccac tcgttaccac caccgccacc cgatcgacaa
     1861 cgtgcgcaag ccctatgacc gcagcgcggc agccccgatc tcgaagctgc acgcattgac
     1921 gatcttgtcg gctgagcagc agacgatgaa cttctacctc aacgtcggtc cgcagtacat
     1981 ggagccgatc gcgcgccagc tttaccagga gatcgcgatg gtcgaggagg agcacgtcac
     2041 gcactacgag tcgctgctcg accctggcga gacctggtgg gagcggctgg tcaatcacga
     2101 gtacaacgag tgctacctct actactcctt catggagcag gagtccgacc gcaaggtcaa
     2161 ggcgatctgg gaacttcacc tgaacatgga gctcgagcat ctgcacgcgg cgtgtgacct
     2221 gatgcgtcag cacgatgggc gcgaccctgc tgaggtgctc gctccggagc tgccgaacgt
     2281 gctgaccttc gagcccaaca aagcttacct acgggagctg ctcgacactc agatcgatct
     2341 aacgacgctg ggcaccggct tcgtcagcga ggcgcacgag cggttccaaa agatgcagga
     2401 cgccgtgatg ggcggggagg atccggccag cgatcgggtg atcgacgagc acaactcggt
     2461 gttcggcacc gactaccgga tcgagaccga gggcccgcat ccccgacccg agctgcgcca
     2521 gcgctcggcc agcaaggttt aaggcagggg atcatgacac agacagcaga gtcagcaaag
     2581 gtcgatgcgg cgcacgacgt cgtcgagttc ctgatcggtc agcacatgca gatccgggat
     2641 ctgttcaccg aggtggacaa gtccaccggc aaggcgcgcc gggacgcgtt cgagcggctg
     2701 gtgaagctgc tcgcggtgca cgagactgcc gaggagcagc tgatccaccc gctggtacgc
     2761 gtgggggtac acggcggcgg tgacatcgtt ggcgaccggc tctccgagga acgcgaagcc
     2821 aaagagatgc tcgtgagact cgaggacgtc gggccggact ccaaccaatt cccgttactg
     2881 ctcgccaagc tgcgagccag cgtgttgatg cacgcacata atgaggaagc ctacgagttc
     2941 cgatacctgc gccgggaagt ggcggcgtcg gagctgcagc ccctggtgag catggtgcga
     3001 gcggccgagg cggtggcgcc gacgcatccg catccgggcg tggagtccgc ggccgcgaat
     3061 actgccgcgg gtccgctgat gtcgctgttc gaccggacga aggacatggt ccgcgaggtg
     3121 atgtccacca accgttgacc gcatgatccg tcaccgcccg ggcgtagccg gccgggcggt
     3181 gacggtgccg ggcgcgcgtt gttgattgag cgaactgcaa gcgggtattt cggacagcga
     3241 cgcgagcgca gagtgtctgg gttcaggtga tgggtgtcgt tttggctcca gatgatgggt
     3301 aacggtgcct aggcggttgt gtggttggtg gtgtgtccgt aggccttgtg tcggcggacc
     3361 tccttgcggc tggtgcgggg cacgtttttg atcagttggt cgcgttggtc gtagacgcgc
     3421 agggtggtgt cgtcgacttc gatggtgacg atctgaccgg catagcgcag cccgacttgc
     3481 acgcgttggc cgatgatttg ggtgccgccg cggcaggaca ccgtgcgctg gacccgagcg
     3541 ggtcgctggt cgagcagtgg cgccgggcct ggtgggcggg cgccttggag gcgggcgcgt
     3601 tgggtggggg tcagagtcag ggggatggtg cgggttaaga ctccgtcgat gatgacgtgg
     3661 gcgacggtgg tttccaggcg cagggtgatg cgccgcccgg cgaattgctg gccgacggag
     3721 tggtagtggc cggcgatgga gaccatgccc acagcgttga cgctgcggtg aatttctacg
     3781 ggagcccccg cggtgagttg ggcccaggag ggtcgtgctg gtggcggtgg gctggcgggg
     3841 cgggcgcctt gagcacgcag ccgggccaag ttgatgctgg tcagccgaga cggcaaggtc
     3901 ttgagatgct gcccgtcg
//
LOCUS       DASVXZ010000615         3986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_336955, whole genome shotgun sequence.
ACCESSION   DASVXZ010000615 DASVXZ010000000
VERSION     DASVXZ010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3986
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336955"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VF788_12960"
     CDS             complement(<1..251)
                     /locus_tag="VF788_12960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3618 domain-containing protein"
                     /protein_id="HEX8935072.1"
                     /translation="MTTSSLKNRRRQDIDRTRGQFDGTLKELTHRINVPECVLDKVHD
                     AKENVRVKAEEVKQQVQAKTGEVKQQAQAKTEEVKRHVH"
     gene            699..1514
                     /locus_tag="VF788_12965"
     CDS             699..1514
                     /locus_tag="VF788_12965"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8935073.1"
                     /translation="MIDVAMQRLGQLGPSQMISSINDQFRFMPFSWSLRRLPSSDRLP
                     ISLSQTTHEAGKRVSLLCPVMRELGGVAEHMNWREADAVARSTVLPPDAPASAVTVLT
                     EVARGGLLWVGIAATLAARPGQSRRAARDGVVAVAMASATSHLIGRWLPRRRPPAVHL
                     AAYQALVHKPTSSSFPSAHAAAAMAFTTAIACESPAVGLMVAPVAMAVAHSRLRTRAH
                     WPSDVIAGALWGVVLGVATRRLLRLQAAADSIQVVRFVAGLVLHRHLGLSMQY"
     gene            1746..1985
                     /locus_tag="VF788_12970"
     CDS             1746..1985
                     /locus_tag="VF788_12970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935074.1"
                     /translation="MTSADNLSADDIKGTMDHVFAEAEPLVDKALEKAGSLSEDAHEK
                     ADLLVERVKDKAEPLIEKLNDKAEPLIEKARDRTS"
     gene            complement(2393..3137)
                     /locus_tag="VF788_12975"
                     /pseudo
     CDS             complement(2393..3137)
                     /locus_tag="VF788_12975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226837.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
     gene            complement(3146..3820)
                     /locus_tag="VF788_12980"
     CDS             complement(3146..3820)
                     /locus_tag="VF788_12980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEX8935075.1"
                     /translation="MAAGNVRAVVFDLDGVLVDSEELWDVVRRGVAAEAGRPWPTGAT
                     RAMQGMSTAEWSAYLAGPVGIPNPPEEVAATVIDRMAAQYATQLPLLPGAVEVVERLG
                     RRWPLGLASSSPRRLIDTVLESAGLVQRFQVSVSTEQVRAGKPSPAVYQTVVQQLGVE
                     PSQAIAIEDSSNGLRAAATAGLGVLAVPNAAFPPSEDALALADVVVDSLDAITVELVE
                     SMSSRS"
BASE COUNT          673 a         1344 c         1256 g          713 t
ORIGIN      
        1 tcgtgtacgt gccgcttgac ctcttcggtc ttggcttggg cctgttgctt gacctctccg
       61 gtcttggctt ggacctgttg cttgacctct tcagccttaa ctcggacgtt ttccttggcg
      121 tcgtgcacct tgtccaggac acactcgggc acgttgatcc tgtgggttaa ctccttcaga
      181 gtgccgtcga actgcccgcg ggtacggtcg atgtcctggc gtcgccggtt cttcagtgac
      241 gaggtcgtca tcggtgcatc ctcaccttaa tggtctcgat cgatttgacg ctggccgcag
      301 tcgcctcggg caccagcgac gtggctgcgc ccggcgcgtg agaagactat gtcgcagcct
      361 tcacactcac cgcggttacg acacgcagaa gacgatccgt tcaagttccg atcaggggat
      421 cctgagagtg gacgacacgc caccgtctcc gacgcctcac cacactctga ggtgctgcgg
      481 gtggccgagt tggtaatcgg tcaggagaca ctcctgagcc ttcgcgacta ccggatgagc
      541 gagctagctt tgagttgttg tcaccgatcg cgcgactgtg gcttctttgc tcgcgttttt
      601 agttcttcga ccttgttcgt ggccttatcg gcaagactca taacgttccg attatcctga
      661 acctgccagg cgggtgactg ccgtcaggag tggtcgagat gatcgacgtc gccatgcagc
      721 gcctcggcca gctgggcccc tcgcagatga tctcatcgat caacgaccag ttccgtttca
      781 tgcctttctc gtggtcattg cgtagattac ccagctcaga ccggctgccg atctcgctct
      841 cccagaccac gcacgaggcc gggaagaggg tgtcactact gtgcccggtc atgcgtgaac
      901 taggcggagt ggcagaacac atgaactggc gcgaagccga tgcggtggcg cgcagcacgg
      961 tgctgccccc tgatgcaccc gcgtccgcgg tgacggtgct gacggaggtc gcacgcggtg
     1021 gactgttgtg ggtgggcatc gctgccacgc tggccgcccg ccccggccaa tcccggcgtg
     1081 ctgccaggga tggcgtcgta gcggtcgcga tggccagcgc tacctcccac ctgatcggaa
     1141 ggtggctgcc gagacgccgc cccccggctg ttcacctggc cgcgtaccaa gcgctggtgc
     1201 ataagccgac gtcgtcgtcg tttccctccg ctcatgccgc cgcggcgatg gctttcacca
     1261 ccgcgatagc gtgcgaaagt cccgcagtcg ggttgatggt ggcaccggtg gcgatggccg
     1321 tggcccattc ccggctccgc accagggcgc actggcccag tgacgtgatc gctggggcgc
     1381 tgtggggagt cgttctaggg gtggccaccc ggcgcctgct acgcctacag gccgccgccg
     1441 acagcatcca agttgtccgg tttgtcgcag gactagtcct gcaccgtcac ctcggcttgt
     1501 cgatgcagta ctaggagccg aggcgacacc gttcgcgctg ggtatgggcc ttactgccac
     1561 gctcgggcgg acccgttggg gtattggtgg aaccagacac gtgaacggga caattgcccg
     1621 actctgcgtc gtccatcctg cacgaaacgg cccgaggcat taaactgctc agcacctccc
     1681 gctaacccct atccgagtgc agagattgag tatctcgatc cgcagcgaag ggagcagcga
     1741 ctgcaatgac ttcagcagac aacctctcag cagacgacat caagggcacg atggatcatg
     1801 tcttcgcgga ggcggagccg ctcgtcgaca aggcgctgga gaaggctggg tcactttctg
     1861 aggacgccca cgagaaggct gatctactag tcgagagggt caaggacaag gctgagccgc
     1921 tcatcgagaa gctcaacgac aaggctgagc cgctcatcga gaaggcgaga gaccgcacat
     1981 cctgaagggg catcagctgc tcagcgtgcg gcggacgcgc cgagatcggt agcgctcgcc
     2041 gaggcaatcc ctcaggacat ggactcgcct gcaaaagctg gtgaagtcgc ctcatccccg
     2101 cctcggcgct gccccccagc gacgcgcaga ccgcgtcgac accgcgctag tggctgaggt
     2161 tgtaccgagt gcacccctgc caaacccacc aaccacacca gtcccagcaa caccaagctc
     2221 aggttcatcc atcactcctg cgtcagcccc gaaccgctga tcacggctcc ggatgaccac
     2281 tacccctgcc acaccggtga cgaaaccact gaggcgcgtg tcgctccggc gagtcgtcac
     2341 catccggagc cgttgacaac atggggacgg gctggatgcc ggctattcgc cctcaggtcg
     2401 tcaggtgggt gcggaagaag tccagaatcc gtcgccagcc gtccacggcg gcctccgggc
     2461 ggtacgacgg ccggtcgacg gcgaagaagg cgtgcccggc gccgtcgtag gtgtggaact
     2521 cgtgctgctt acccaagcgg tccagttccg cagcgagtat ggcccctctc agccggtgac
     2581 gggtgctggt cgtcggcgcc gaacaggccg agcaacgggc aggacagctg cggcgccaga
     2641 tgcaggatgg gtcgcaactg cttcggcata gcgggtggcg ggtcattcac cacgaaggcg
     2701 ccgtagcaat ccacggcggc gtccacgcgc aacgagcagg ccgccaggaa agcatgccgg
     2761 ccgcccgagc agtagccgat cacgccgatc ctgccgttcg cgccgtccag gctcctgagg
     2821 tgctctgcgg cacctcccac gtccccgacc agccgctcat ctggcacccc gccagcggcg
     2881 cgcacggtgg ccgctgcgtc gcccggctca gccccgggcg cctcccgtga gtacaggttg
     2941 ggacacagtg ctcggtatcc ctccgccgcg aacctgcgga cgatctcctt ggtggccacg
     3001 tcgtagccgg gcatgtggtg gatgactacc acgcctccac gccggtcggg ctccagcggg
     3061 cgggccaggt atgcctcaat ccgatcaccg ctgtgtccgg tgatggtgac ggtctctgct
     3121 ctcatagcgg ctgtcatgcg gccgcctagc ttcggctgct catcgactcc accagctcca
     3181 cggtaatcgc atcgagcgag tccacgacaa cgtcggcgag cgcgagcgcg tcctcagatg
     3241 gcgggaaggc cgcattgggc acggcgagca cacccagtcc ggcggtagcg gcggcgcgca
     3301 ggccattgct ggagtcctcg atcgcaatcg cctgcgatgg ctccacgccg agctgctgca
     3361 ccacggtctg atataccgca ggcgagggct ttccagccct tacctgctcc gtggagacgc
     3421 tgacctgaaa ccgctgtacc aacccagctg attccaacac agtgtcgatc agccgccgcg
     3481 gtgaggacga cgcgagcccc aggggccagc ggcgccccag ccgctcgacc acctcgaccg
     3541 cgcctggcag cagaggtagc tgcgtggcgt attgagcggc catccggtcg atgacggtgg
     3601 ccgccacctc ctccggcggg ttgggtatgc ccacggggcc agccaggtac gccgaccact
     3661 cagcggtact catgccctgc atcgctcggg tcgctccggt gggccagggc cggccggcct
     3721 cggccgcgac accgcgacgg acgacgtccc agagctcctc cgaatccacc agcactccgt
     3781 cgaggtcgaa gaccactgcc cgcacgttcc cagccgccat gccactcctc agtcatgatc
     3841 gtcatcgaac cacggaaact gaggatctgc cggcgtagtg ggtcgaggtt cggtgtgcgg
     3901 taccggtcgc ggtccacctt cccctgctcg gtgccccccg cgattacctg ccgctgcgcc
     3961 cggggctgca gagttgtggc tggtcg
//
LOCUS       DASVXZ010000616         2853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_427227, whole genome shotgun sequence.
ACCESSION   DASVXZ010000616 DASVXZ010000000
VERSION     DASVXZ010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427227"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..706)
                     /locus_tag="VF788_12985"
     CDS             complement(5..706)
                     /locus_tag="VF788_12985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015102466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8935076.1"
                     /translation="MTIDVTREFDAAAASYDRLVGASPGYYRNLARSAQRMQLPGDGA
                     GLHLLDLGCGTGASTLALLAAAPQARITAVDGSAGMLAKARQAAWPARVSFVHAQAEA
                     LTEAGVQGPFDGVFAAYLVRNLPEPDPVLVGLCTQLAPGAPLGVHDYALDGRALSRAI
                     WTAVCWSVIIPAGKVVTGRAQLYRYLWRSVLRFDTVDALAARLRRHGLVDTHIDTMPG
                     WERGIVHTVVARKPQ"
     gene            complement(746..2722)
                     /locus_tag="VF788_12990"
     CDS             complement(746..2722)
                     /locus_tag="VF788_12990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-1,4-glucan--maltose-1-phosphate
                     maltosyltransferase"
                     /protein_id="HEX8935077.1"
                     /translation="MSGRIAIDDVTPEVSCGRYPSKAVVGEHVPVSATVWREGHDAVA
                     ATVVWRGPGSRSTSQLRMRPGPPGTDSFTATVVADQVGWWSYRVDGWADPWETWRHAI
                     EVKIDAGQTAAELENDLITGARLLERAARRPGQQANRATLSTAAAALRVTDRRLEDRV
                     SPALSAPVIEIMSSDPLRDLITRGVSHKIWVDRPRALFGSWYEFFPRSTGGRDAQGNP
                     VHGTFATATGDLDRIAGMGFDVVYLPPIHPIGEVNRKGPNNTTDVGPDDFGSPWAIGS
                     VEGGHDAVHPLLGTLEDFAAFVTRARELGMEVALDFALQCAPDHPWAKEHQEWFTTRP
                     DGSIAYAENPPKRYQDIYPLNFDTDARGIYAEMLRVMLFWVERGVRIFRVDNPHTKPP
                     DFWQWLIWQVKDRYPDVLFLAEAFTRPARLYGLARLGFTQSYTYFTWRTTKPEITDYA
                     TELAARADEMRPNFFVNTPDILHASLQQGGPGMFAIRAALAATLSPSWGVYSGFELYE
                     NTPVAPGSEEYLDSEKYQLRPRDFAAALAGGRSLEPWITRLNAIRKAHPALQQLRTLR
                     FHHTDTDALLAYSKTDPATGDTVICVVTLDPFSTVSGTVRLDLPALGMDSSDRFDVHD
                     KVSGETYNWGEVNFVQLQPWRAVAHIVQTPTSLR"
BASE COUNT          466 a          951 c          962 g          474 t
ORIGIN      
        1 ggcgtcattg gggcttcctc gcgacgacgg tgtgcacgat gccgcgttcc cacccgggca
       61 tcgtgtcgat atgagtgtcg accaggccgt gcctgcgcag ccgtgcagcc agagcatcaa
      121 cggtgtcgaa acgcaacaca ctgcgccaca ggtagcggta cagctgagcc cggccggtaa
      181 ccaccttccc ggccgggatg atcacactcc aacacaccgc ggtccagatc gcgcggctga
      241 gcgcccgccc gtccagtgcg tagtcgtgca cccctaacgg cgcgcccggc gccagctggg
      301 tgcacagccc caccagcacc gggtccggct ccggcaggtt gcgcaccagg taggcggcga
      361 agaccccgtc gaaaggccct tgcaccccgg cttcggttag ggcctcagcc tgagcgtgca
      421 cgaaggacac gcgagctggc caggccgctt ggcgggcctt ggcgagcatg ccggccgatc
      481 cgtccaccgc ggtgatccgg gcctggggtg ccgctgccag tagcgccaac gtggacgctc
      541 cggtcccgca acccagatcg agcaggtgca gcccggcgcc gtcgcccggt agctgcatcc
      601 gctgggcgga gcgggccaag ttacggtagt agcccgggct cgctcccacc agccggtcgt
      661 aactggctgc ggcggcgtcg aactccctcg ttacgtcgat cgtcacgaca ggagcctacg
      721 gttacccgcg tcgatcggtt cacgtctaac ggagcgaagt cggcgtttgc acaatgtgag
      781 cgactgcgcg ccagggctgt agctgcacga agttgacctc gccccagttg taggtttcgc
      841 cgctgacctt gtcgtgcacg tcgaaccgat ccgacgagtc catgcccagc gcggggagat
      901 ccagccggac cgttccgctc actgtgctga acgggtccag ggtgaccacg cagatcacgg
      961 tgtcaccggt ggccggatcg gtcttggagt acgccaagag cgcgtcggtg tccgtgtggt
     1021 gaaaccgcag cgtgcgtagc tgctgcagcg cgggatgcgc cttacggatc gcgttgagcc
     1081 gggtgatcca gggttccagg gaccggcctc cggccagtgc ggcggcgaag tcccgggggc
     1141 gcagctggta tttctcgctg tccaggtatt cctcactgcc tggagccacg ggcgtgttct
     1201 cgtaaagttc gaaaccggag tagacccccc atgaggggga cagggtggcg gccagggcgg
     1261 cacggatggc gaacatgccg ggcccaccct gctgcagtga cgcatgcagg atgtccgggg
     1321 tgttgacgaa gaaattcggc cgcatttcgt ccgctctggc cgctaactcc gtcgcataat
     1381 ccgtgatctc cggcttagtg gtgcgccagg tgaagtaggt gtaggactgc gtgaaaccca
     1441 gccgggccag cccatagagg cgagcggggc gggtgaatgc ctcggcgagg aacagcacgt
     1501 cagggtagcg gtccttgacc tgccagatta gccactgcca gaagtccggc ggcttggtgt
     1561 ggggattgtc gacccggaag atccgcacgc cgcgttccac ccagaacagc atcacccgca
     1621 gcatctccgc atagatcccg cgggcatcgg tgtcgaagtt gagcgggtag atgtcctggt
     1681 agcgcttggg cggattctcc gcgtaggcga tggacccgtc cggacgagtg gtgaaccact
     1741 cctggtgttc cttggcccac gggtggtccg gcgcgcactg cagcgcgaag tccagcgcga
     1801 cctccatgcc gagctcgcga gcccgcgtga cgaaggccgc gaaatcctcg agggtgccca
     1861 gcaggggatg gacagcatcg tggccgccct cgacggaacc gatcgcccat ggcgatccga
     1921 aatcgtcggg gccgacgtcc gtggtgttgt tcggaccctt gcggttcacc tcgccgatcg
     1981 gatggatcgg tggcaggtac accacgtcga agcccatccc ggcgatccgg tccagatcac
     2041 cggtggcggt ggcgaaagtg ccgtgcaccg ggttgccctg ggcatcccga ccaccggtgg
     2101 agcgcgggaa gaactcgtac caggagccga acagggcccg ggggcggtcc acccaaatct
     2161 tgtgcgacac acctcgggtg atcaggtcac ggagtggatc agaggacatg atctcgatca
     2221 ccggcgcgga gagcgccgga ctgacccgat cttcgagccg gcgatcggtg acccgcaatg
     2281 ccgccgctgc agtgctgagc gtcgctctgt tggcctgctg accgggccgg cgagcggcgc
     2341 gttccagcag tcgggcgccg gtgatcaggt cattctccag ctcagccgcg gtctggccag
     2401 cgtcgatctt cacttcgatg gcatgtcgcc aggtctccca gggatcggcc cagccatcca
     2461 cgcggtagct ccaccaaccc acctggtccg ccactacggt cgcggtgaag ctgtcggtgc
     2521 ccggaggtcc tggccgcatc cggagctggc tggtcgagcg gctgccggga ccacgccaga
     2581 ccacggtggc ggccaccgca tcgtgtccct cacgccacac ggtggcgctc accggaacgt
     2641 gctccccgac caccgccttg ctcggatacc tgccgcagga cacttcgggc gtcacatcat
     2701 cgatggcgat ccgaccactc accgctgccc gccccttccc ctgatgcttg ggttccagtg
     2761 tgccgggaga gccgcccggt gtcgcctcca acgtgacgtc cgcgactgcc tcgattgggc
     2821 gcagtttggc tgcggactgt gctcgccggc tga
//
LOCUS       DASVXZ010000617         1858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_68358, whole genome shotgun sequence.
ACCESSION   DASVXZ010000617 DASVXZ010000000
VERSION     DASVXZ010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68358"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VF788_12995"
     CDS             <1..248
                     /locus_tag="VF788_12995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935078.1"
                     /translation="GLGVLMIGDAQVTTNGQGTPVGTVQFKDGKGTPIGAPVPVTAGH
                     ALLIAFRPAGSTVTAVFTPALGTTFTSSTSNTVTIRS"
     gene            356..1120
                     /locus_tag="VF788_13000"
     CDS             356..1120
                     /locus_tag="VF788_13000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935079.1"
                     /translation="MNRLSRAAGLVTIALGMLVLLAPPALADPIGGVIVIPGTGTYLD
                     PLRLRTSTGCPSQASAYYATMRGHGFPPDGQIITTNTEAGLSHSIGFDVYVALIMRDY
                     ANKNHNTLAGRYDVTVYCTDHFGLESYGEFTGSLEFTSPTTYEAIGTAKPVGSPPPPL
                     ADAGSALALGQGSPPTGPASALGQPASSSAGHVPSSQAPSADPRDTSAARQSTSQHHD
                     LLVEGIPWLVLVLVSAVLVALVIAAVTRQIGKRRPS"
     gene            1311..>1858
                     /locus_tag="VF788_13005"
     CDS             1311..>1858
                     /locus_tag="VF788_13005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935080.1"
                     /translation="MRLMSGAAVAAVTAGSVLLVSGVASAAPSAGTLGFDTITPAEGS
                     DTEPMSSRTSAPCPSGSEAADLTITGPVGADPATATFPATNPYPLTTIDGIQFSTTGP
                     FVQQFRKVLRDAAAERGKTIQTGEYNLTTHCMDQFGFTVFGTFTAGLNFDTPTHYTVI
                     PSSTPGPTPTPTPTPTSEPTPTP"
BASE COUNT          341 a          640 c          538 g          339 t
ORIGIN      
        1 acggcctggg agtcctgatg atcggcgacg cgcaggtaac cacaaacggc caaggcaccc
       61 cagtgggaac cgtccagttc aaagacggga agggcacccc catcggtgcc ccggttccgg
      121 tgaccgccgg tcatgccttg ctcatcgcgt tccggcctgc gggctcgacc gtaacggcgg
      181 tattcacccc cgctctcggg accaccttca cctcgtccac gtcgaacacc gtgacgatca
      241 ggtcctaagg ggcttgttgc tgcacctggg tgagccacac ccaggtgcag caacacagtc
      301 agcccatatc cggcggccac cacccttgac cgccaactga gacccgaagg aacccatgaa
      361 ccgactgtcg cgtgcggccg gtctggtcac gatcgcgcta ggaatgctgg tgttgctagc
      421 tccgcccgca ttggctgacc cgattggcgg cgtgatcgtc atcccgggta ccggcaccta
      481 cctggatccg ctccggctgc gcacctcgac tgggtgcccg tcgcaggcaa gcgcgtacta
      541 cgccacaatg cgcggtcacg gtttcccgcc tgacggccag atcatcacga ccaataccga
      601 agccggccta tcccacagca tcgggtttga cgtgtatgtc gcactgatca tgcgtgacta
      661 cgcgaataaa aaccacaaca cgttggccgg tcgctacgac gttacggttt actgcaccga
      721 ccattttggg ctagaaagct acggggaatt caccggatcg ctggaattca ccagcccgac
      781 cacctacgaa gcgatcggga cggcaaagcc ggtcggatca ccgcccccgc cgctggctga
      841 tgctgggtcc gcactggcgc tgggccaggg ttcgccgccc acgggtccgg catcagcgct
      901 cggccagccg gcatcatcgt ctgctggcca cgtgcccagc agccaggcgc catcggcgga
      961 tccccgcgac acttcagcgg ccaggcaatc tacctcgcag caccacgacc tgctggtcga
     1021 gggtattccg tggttggttc tggtcctggt cagtgcagtg cttgtcgccc tggtcatcgc
     1081 agcggtgacg agacagatcg ggaagcgtcg tccctcgtga ccaccgaagg ctggtcagcg
     1141 ggttccgagg cgagcttgtg gaccactcta cgggaccgtc ccaattccgt gcatcacgag
     1201 cttcgatttc gcgccgagct cgagtcgccg ttccacccgc atcacaccgc ttatttagac
     1261 ccttttctca gtgagagtga gtttatatcg tgcacaagaa aagattattg atgaggttga
     1321 tgtcgggggc tgcggtggct gcggtaactg ctggttcggt gttgctggtg agtggcgtgg
     1381 ccagcgccgc tccgtcggcg ggcacgttgg gtttcgacac catcaccccg gcggagggct
     1441 ccgacaccga acccatgtcc tccaggacct cggctccctg cccgagcgga tcggaggccg
     1501 ccgacctgac cattaccgga ccggtcgggg cggatccagc caccgcgacc ttcccggcca
     1561 ccaacccgta cccgcttact accatcgacg gtattcagtt ttctacgacg ggcccatttg
     1621 tccagcagtt caggaaggtc ttgagggacg ccgccgccga acgcggcaag acgatccaaa
     1681 ctggtgagta caatctgacc acgcattgca tggatcaatt tggcttcacg gtgttcggca
     1741 ccttcaccgc aggtctcaac ttcgacaccc cgacgcacta caccgtcatc ccctcctcca
     1801 ctccgggtcc gacgcccacg ccgacgccca cgccgacatc ggagccgacg cccacgcc
//
LOCUS       DASVXZ010000618         3664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1468599, whole genome shotgun sequence.
ACCESSION   DASVXZ010000618 DASVXZ010000000
VERSION     DASVXZ010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1468599"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1034)
                     /locus_tag="VF788_13010"
     CDS             complement(<1..1034)
                     /locus_tag="VF788_13010"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEX8935081.1"
                     /translation="MSEGCSARARRHRGELSSEALEGQVDGERRAFVEGYAPSESEAT
                     RSGALAGGSADVAHVSVTGGRAITVAAWTLISRITGLLRVVVIGAVLGPTFFANAFLS
                     ANTVPNLLFAAMAGPVLALVLVPALTRALTERGVADSRRLLGRVTGYLLFWASILSGA
                     IAVASPLVALAVTAGIPDDATRWRAWQLTILIVLFVAPQVLCYTLASIGTAVQQTKGR
                     FALASAAPAVENLGMITMMGVVALWYRPGVDVPDVSVGMVLVLGVGSTLSVAAHAAVQ
                     LYGAYRVGLPIRARGGWSTEPDAREVSQRLRHSVAVAAFPVSSMFVMLAVAATVPGGV
                     FVFQAALSVYT"
     gene            1360..2448
                     /locus_tag="VF788_13015"
     CDS             1360..2448
                     /locus_tag="VF788_13015"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8935082.1"
                     /translation="MVADELTGNIRLAAIGAESRARWEAVVHADANVNILQTPVWCDC
                     ICRSEGLEDVTRAYESSDGRLIVLPLVRSRRLPMQLKVQSSWPGPWGFCGLLAAEGRI
                     TSNDVIQIIKDLQAYNGLRTSVPVPRTTDAQLWEALVPSHVIRESRTTHVLNLSGGFE
                     NVWRKRFAGAVRTATRKAERLGITVESDTTGRLLPVFDALYRMSVDRWAKDRHHPLVI
                     ARFLASRREPFRKFRIVADLLGETCEVHIAWLRGKPLAGTIVLTHGVVATYWRGAMDM
                     ERAAGTGANELLHRVAIETACQRGCLQYDMQRSASQNLGRFKSKFGAQPTNFFEYRFE
                     NIPVTVLDRRARVFAKRMLRMPKAEISC"
     gene            2938..>3664
                     /locus_tag="VF788_13020"
     CDS             2938..>3664
                     /locus_tag="VF788_13020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935083.1"
                     /translation="MFTKKDTDVDRSTTGHLNALLPPGLIAGAGTAIGLAIARGLGGT
                     GVPIVGASLTPTAPTCRSKLWHSVLKVSAPTTEAWLATLRAAHAQYGPMVLFPADDTV
                     VRIVAEHADELATQFHFVLPDLSTVDRLLDKSVFHKWALANDFPVPHTAIVRNPGQLR
                     AALDEMVFPVVFKPVERTPQWQDFSKYGTAYRFETADDFDRLPFAPFDAADRFVVQEW
                     IPGRDSDVYFCLTYRNRKGEELAA"
BASE COUNT          705 a         1156 c         1154 g          649 t
ORIGIN      
        1 gtgtacaccg acagggcggc ctggaacacg aagactccgc cgggcaccgt cgccgcgacc
       61 gccagcatca cgaacatgga ggacaccggg aaggccgcta ccgccaccga gtgccgcagc
      121 cgctggctga cctcgcgggc atccggctcg gtcgaccagc cacctcgcgc ccgaatcggc
      181 agcccgaccc ggtatgcccc gtaaagctga acggccgcgt gggccgccac tgacagtgtg
      241 gaacccacgc cgagaaccag caccatgccg accgagacgt ccggtacgtc caccccgggc
      301 cggtaccaca gcgcgaccac gcccatcatc gtgatcatgc ccaggttctc caccgctggc
      361 gccgcagagg ccaacgcgaa ccggcccttg gtttgttgca ccgcggtgcc gatcgaggcc
      421 agggtgtagc aaagcacctg cggtgctacg aatagcacga tcaggatggt cagctgccat
      481 gctcgccagc gagtggcatc gtccggaatg cctgcggtga ccgccagcgc taccagcggg
      541 gacgccaccg cgatggcgcc ggacaggatc gacgcccaga acaacagata acccgtgacc
      601 ctgccgagta gccgacggga atcggctacg ccgcgctcgg tcagtgcacg ggtgagcgcc
      661 ggtacgagca ccaatgccag gaccggcccg gccatcgctg cgaagagcag gttcggcacg
      721 gtgttcgcgg acaggaacgc attggcgaag aaggttgggc ccaggacggc gccgataacg
      781 accacccgca gcagccccgt gatccggctg atcagcgtcc aggcggccac cgtgatcgcg
      841 cggcccccgg tgacggatac atgcgctaca tcggcggatc cgccggccag cgccccggag
      901 cgggtcgcct cgctttcgga tggggcatag ccctcaacga atgcgcggcg ctcgccgtcg
      961 acctgcccct ccagggcctc ggagctcagc tcgccacggt gacggcgcgc gcgcgccgag
     1021 cagccttcgc tcatagcccg aacattagcc ctgagtctga atccgagatt taggctcgcg
     1081 gagcgtacgc gctcccgctt gagcgcgccg gcactctagg cgcgcgtcgt cgctgggtgc
     1141 gccccgcggt ggcgaggccg ctgcgcgtca cggccggacc gagccgctgc ggccagcccg
     1201 ggtccgggag ccagcattcg gctcaccttc cgctcatata ccggcagttc caagaaaact
     1261 cccaggaccg ccaagaattc tagcccggaa gccaacccgc cgagcccaac tacctgaggg
     1321 tttccaaggg cgcggtaggg tccagccgag gaggagccga tggtggctga tgagctgacc
     1381 ggaaatattc gacttgctgc gataggggct gaaagcaggg caagatggga ggccgtcgta
     1441 cacgcggatg ctaatgtaaa tattctgcag acaccggtct ggtgcgactg catctgccgt
     1501 tccgaaggcc ttgaagacgt tacgcgggca tacgaatcgt ctgacgggcg tcttattgtt
     1561 ttgccacttg tgcgaagccg taggctcccg atgcaattaa aagttcaatc ctcttggcct
     1621 ggcccctggg gcttctgtgg tttgctcgcc gctgagggcc gtattacttc caacgacgtc
     1681 attcaaatta ttaaggacct gcaagcctac aacggactga ggaccagtgt tcctgtacct
     1741 aggacgactg acgcccagtt atgggaagcg cttgttccct cacatgttat cagggaatct
     1801 cgcacaacgc atgtgctgaa cctttccggt ggattcgaaa acgtttggag aaagcgcttc
     1861 gcgggtgcgg tgcgcaccgc gacccgaaaa gcggagcgtt tagggattac ggtagaatcc
     1921 gacacgactg ggcggctact gccggtgttt gacgctcttt atcgtatgtc agtcgatcgc
     1981 tgggctaaag atcggcacca cccgctggtc attgctcgct ttcttgcgtc gaggcgtgaa
     2041 ccatttcgca agttccgaat cgtagcagac cttctgggtg agacttgcga ggtgcatatc
     2101 gcatggctcc gcgggaagcc cttggctggg acaatcgttc tgacgcacgg cgtcgttgca
     2161 acctactggc gcggtgcgat ggacatggag cgtgcggcag gaacgggcgc gaacgagttg
     2221 cttcatcgag tcgcgattga aaccgcgtgt cagcggggat gtctgcagta cgatatgcag
     2281 cgatcagctt ctcagaatct tgggcgcttc aagtccaagt tcggggccca gcccacgaat
     2341 tttttcgagt atcgatttga gaatatccct gtgacggtgc tcgaccgccg agctcgagta
     2401 tttgccaagc gcatgctacg tatgccaaag gccgagatct cctgttagta gcgcaacggc
     2461 agttgcgtcg tgtcgtggat ggattttggt gtgcttggcg tagtaggccc gcagatccgc
     2521 tgactgcgac ggtggcccag gatcactggc gcaccctggc gacgaccagg ctgccagcga
     2581 cacccacgcg tgacgggcgg ctccatggtc atcgtgacct gtgcaggagc cgtattcacc
     2641 ggcaacagcg ccccacaacc gcgtcaattc cccagccgca ccccggcgac cgagcgaccg
     2701 ccagcgggtc gatccaaccc cggcgtggta acgctatgta ctcagagtgg tgaacgtgac
     2761 cacacgatcg ggtatctgtg taacactctc gacgaagtgg cgatgacaat cagtacagga
     2821 tcccggggat ccgtggggca gaccctccgg ggaccactca tagggcgaca gggacgtggt
     2881 gaaccgccaa ggctagggag gctacagcgg cggtcccgcg tataggggga atcccgattg
     2941 ttcacgaaga aggacactga tgtcgaccga agcaccacag ggcatctgaa cgcgttgctg
     3001 ccgccggggc tgatcgcagg tgccgggacc gccatcgggc tggccattgc tcggggcctg
     3061 ggcggcacgg gagtgcccat cgttggcgct tccctcaccc cgacggcgcc aacttgccgc
     3121 tcaaagctat ggcacagcgt cctgaaggtc agcgcaccaa ccacggaagc atggctggcg
     3181 acgctgcgtg cggctcatgc gcagtacggc ccgatggtgc tgtttcccgc cgatgacacg
     3241 gtggtgcgca tcgtcgccga gcacgctgac gaactggcca cgcagttcca cttcgtgctg
     3301 ccggacctat caaccgttga tcgattgctg gacaagtcgg ttttccacaa gtgggcccta
     3361 gccaacgact tcccggttcc acacacagcg attgtccgca accctggcca gttgcgcgca
     3421 gcgctggacg agatggtctt tcctgtggtg ttcaagccgg tcgagcggac accacaatgg
     3481 caggacttca gtaagtatgg cacggcctac cggttcgaga ccgccgacga ttttgaccgg
     3541 cttccgttcg ctccgttcga tgccgctgac cgcttcgtcg ttcaggagtg gattccgggc
     3601 cgcgacagtg acgtctactt ctgcttaact taccgcaacc gcaagggcga agagttagcg
     3661 gcgc
//
LOCUS       DASVXZ010000619         1705 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1289275, whole genome shotgun sequence.
ACCESSION   DASVXZ010000619 DASVXZ010000000
VERSION     DASVXZ010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1289275"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1061)
                     /locus_tag="VF788_13025"
     CDS             complement(<1..1061)
                     /locus_tag="VF788_13025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020638631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HEX8935084.1"
                     /translation="MSALDSRTGRHRHRRDGEPAAVAVPGHGHGHGHGPVLAASRRVR
                     MLLAAALIPVALAILIGVWLTWPGDSPRSKVDVGFGLRPVQGQVLGATSAPCTNGAAG
                     AGQPKECISLNVLLTNGDSPGVMIQQVLPDEPSTPHFTAGDDIVLAYNGGNPSEAESY
                     QIQDFQRGGSMLWLFALFAAAVLLLGRWRGLASLLALGFSFLVLVVYLFPAILTGASP
                     VVVGVLAAGVIMFGVLYLTHGFSAQTSSAVLGTVLSLALIGVLGSAFSAATRLTGLDD
                     DTAKLIGVLGHGIDARGLLLAGMVIGALGVLDDVTVTQTSSVWELRRANPELGVRALY
                     TSALRIGRDHISSAVNTLAL"
     gene            1114..>1705
                     /locus_tag="VF788_13030"
     CDS             1114..>1705
                     /locus_tag="VF788_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX8935085.1"
                     /translation="MRWDNLTLSDDSAQDALFGASDVITRTFDTPEFRGMTFYEVRAR
                     SVVNKVPGGSRMPFEWTVNPYRGCSHACVYCFARRTHEYLDLGTGIDFDSKIVVKVNA
                     PELVRRELTSPRWAGAHIAMGTNVDPYQRVEGRYRLMPGILEALRDARNPFSILTKGT
                     LVLRDLDLLSQAAEVTDVSVNVSVGCIDPTLWRQVEP"
BASE COUNT          317 a          558 c          560 g          270 t
ORIGIN      
        1 agcgcaaggg tattcactgc tgaggagatg tggtcccggc caatccgcaa ggcggaggtg
       61 tagagcgccc ggacgccgag ctcgggattc gcccggcgca gctcccatac cgagctggtc
      121 tgggtgactg tgacatcgtc gagcacgccc agtgcgccga tcaccatccc ggccagcagc
      181 agaccccggg cgtcgatccc gtggccgagg actccgatca gcttggcggt gtcgtcgtcc
      241 aagccggtca ggcgagtcgc cgcggagaag gcgctaccca gcacgccgat cagcgcaagg
      301 ctcaacactg tgcccagcac cgcgctggaa gtctgcgcgg agaatccgtg ggtgaggtag
      361 agcacgccga acatgatcac tccggcggcc agcacaccga caaccaccgg gctcgctccg
      421 gtgaggatcg cggggaacaa gtagaccact aagacgagga aactgaaacc gagcgcgagc
      481 agcgaggcga gcccccgcca ccggccgagc agcagcaccg cggcggcgaa cagcgcgaac
      541 aaccacagca tcgaaccgcc tcgctggaag tcctggatct ggtacgactc ggcctcggag
      601 ggatttccgc cgttataggc cagcacgatg tcatcaccgg cggtgaaatg tggcgtgctc
      661 ggttcgtcgg gtagcacctg ctggatcatc acgccggggg agtcgccgtt ggtgagcaag
      721 acattgagcg agatgcattc cttgggctga ccggcgccgg cggcaccgtt ggtgcacggg
      781 gcggaggtag cgccgagcac ctggccctgc accggtcgca gcccgaaccc gacatcaacc
      841 ttgctgcgag gcgagtcacc cggccaggtc agccacacgc cgatcaggat ggccagcgcg
      901 acgggtatga gtgccgcggc cagcaacatg cgtacccggc gcgacgccgc aagcaccggt
      961 ccgtggccgt gcccgtggcc gtgcccaggg accgccacgg cggctggctc cccgtccctg
     1021 cggtgacggt gccgtccggt cctgctgtcc agtgcactca tcggatgggc acgcctcctg
     1081 gcaaatcgaa catgagttcg atatagtggg ccggtgcgat gggacaacct gacgctgtcc
     1141 gacgactccg cccaggatgc gttgttcggg gcaagcgacg tcatcacgcg caccttcgat
     1201 accccggagt tccgcgggat gacgttctac gaggtgcggg cccgttcggt cgtcaacaag
     1261 gtaccgggcg gctctcggat gcccttcgag tggaccgtca acccctaccg gggctgcagc
     1321 catgcgtgtg tttattgctt tgcgcgacgt acgcatgagt acctcgacct tggcactgga
     1381 atcgatttcg actccaagat cgtggtgaag gtcaacgctc cggagctggt acgcagggag
     1441 ctcacgtccc cacgttgggc gggagctcac atcgcgatgg gcaccaacgt cgacccctac
     1501 cagcgagtcg agggacgcta ccgcttgatg cccggcattc ttgaggcact ccgcgatgca
     1561 cggaacccgt tttcgatcct caccaagggc accctcgtgc tgcgtgacct cgatctgctg
     1621 agccaagccg cagaagtcac cgacgtttcg gtcaacgtct cggtagggtg catcgaccca
     1681 acgttgtggc ggcaggtcga acccg
//
LOCUS       DASVXZ010000620         4208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1468757, whole genome shotgun sequence.
ACCESSION   DASVXZ010000620 DASVXZ010000000
VERSION     DASVXZ010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4208
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1468757"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VF788_13035"
     CDS             <1..479
                     /locus_tag="VF788_13035"
                     /inference="COORDINATES: protein motif:HMM:NF039581.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935086.1"
                     /translation="EEQAHEELKRQGVTGEITLTRLADARYAGQSHELRLVAEAGADV
                     TQLMHRAHHEAYGYAMPEERVLVVTLRVVARGEPILPAPPDDWDQGQAAPEGSREIGI
                     AERTVRARVVSRAGLAAGDEVRGPALIEQPDTTTLLATDEVAMVDDAGNLVVQLHG"
     gene            472..2028
                     /locus_tag="VF788_13040"
     CDS             472..2028
                     /locus_tag="VF788_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEX8935087.1"
                     /translation="MAELSAVELEVFRHALAGVAEEMGVALRRAAYSPNIKERADCSA
                     AVFDPDGEMVAQAEHIPVHLGAMPASVRAVLDTYGPLQPGQQVCVNDPYLGGTHLPDL
                     TIVAAVGSADGAELLGYVANRAHHADVGGAAPGSMPATATEIAMEGIRIPPILVADAD
                     GERDDVMRLIAANSRTPGERRGDLRAQFAANHVGARRLHELAARMGPARLHEAMAAVC
                     DYSDRRVRAAVQEIPDGCYRYRDVLEIGDGVTIRATVTVAGDEVTIDFDGTDAQIPVN
                     LNAVFAVTQSCAMFVFRMLTDPDAPPNAGCYRALHVRAPEGSVVHARFPAPTAAGNVE
                     TSQRIVDVLLGAFAQAMPEWVPAASQGTMNNLLIGAGAGHPFSYYETLGGGEGGTPSR
                     AGMSGVHTGMTNTQNTPAEAMELDYPLRVWRYELRSSSGGAGQHPGGDGLIREVEVLA
                     DCTLTVQSERREHPPWGLQGGHSGAVGRNILCRSDGTEVELPSKGTWQLHRGDRIRIE
                     TPGGGGWGTP"
     gene            complement(2570..2887)
                     /locus_tag="VF788_13045"
     CDS             complement(2570..2887)
                     /locus_tag="VF788_13045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935088.1"
                     /translation="MAARNSLQTLAPRSPLVSLAPPVTFGRRAQDTRDPQADVPHGRQ
                     FGRPGTTGCRPRTLPVLLDDPAATALALRTHMERADLMELTLILAEAAADVLRDRDTP
                     ERP"
     gene            complement(3010..3486)
                     /locus_tag="VF788_13050"
     CDS             complement(3010..3486)
                     /locus_tag="VF788_13050"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEX8935089.1"
                     /translation="MTLPGISDVGTRTATASVARDLVLFLARIGLGVLMVAHAKLEYD
                     FAGGSIAGVGALFEKSGVPLAAITGPANMLFEFVGGVAMILGLAVLPVGVLMALNMAG
                     AWIFVHHGGLYALDYTGPELVIALGLLSLVLAVSGSGRLGLDHLIVGRAQDSRTRR"
     gene            complement(3569..3748)
                     /locus_tag="VF788_13055"
     CDS             complement(3569..3748)
                     /locus_tag="VF788_13055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935090.1"
                     /translation="MDEPPQLDHVARYPEALSFAPGLPTEQFFDVRGARKRDLQPRGC
                     YVTPDFANPSGAMSN"
     gene            complement(3782..>4208)
                     /locus_tag="VF788_13060"
     CDS             complement(3782..>4208)
                     /locus_tag="VF788_13060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-hydroxy-acid oxidizing protein"
                     /protein_id="HEX8935091.1"
                     /translation="TLPLVIKGILDPRDARLAVDVGADAVVVSNHGGRQLDAAPPSVA
                     ALPAVVEEVGDACEVLLDSGVRGGTDVLRALALGASGVLVGRPVLWGLAADGEAGVRQ
                     VLTLIHAELSEAMTLAGCSDLNAASGLRTAEVAWHARHS"
BASE COUNT          748 a         1417 c         1402 g          641 t
ORIGIN      
        1 tggaggagca agcgcatgag gagctgaagc gtcagggcgt gacgggcgag atcacgctga
       61 cccggctggc cgacgcccgc tacgccggcc agtcccacga gctccggctc gtcgccgaag
      121 ccggtgcgga cgtgacgcaa ctgatgcacc gcgcgcacca cgaagcttac gggtacgcca
      181 tgcccgagga gcgggtactg gtcgtcacgc tgcgggtggt ggcgcggggt gaaccgatcc
      241 tgcctgcgcc gccggatgac tgggatcagg ggcaggccgc tccggagggg tctcgcgaga
      301 tcggcatcgc tgagcgcacc gtcagggcac gagtggtctc ccgagctggg ctggcagccg
      361 gggacgaggt ccgcggccca gcgctgatcg agcagccgga caccaccacg ttgctcgcta
      421 ccgacgaggt cgccatggtc gacgacgccg gcaacctggt ggtgcagctg catggctgaa
      481 ctgtccgcgg tcgagctgga ggtgttccgg cacgcgctgg ccggggtcgc tgaggagatg
      541 ggcgtcgccc tgcggcgggc ggcgtactcg cccaacatca aggaacgggc tgactgttcg
      601 gcagcggtgt tcgacccgga cggtgagatg gtcgcccagg ccgagcacat cccggtgcat
      661 ctgggtgcca tgccggccag cgtccgcgcg gtgctcgaca cctacgggcc gctgcagccc
      721 ggccagcagg tctgcgtcaa cgacccgtac ctgggcggaa cccacctgcc tgatctcacg
      781 atcgtcgccg ccgtcggctc cgcggacggt gccgaactgc tcggctacgt ggccaaccgc
      841 gcgcaccacg ccgatgtcgg tggagcggct cccgggtcca tgccggcaac agccaccgag
      901 atcgcgatgg agggaatacg gattcccccc atcctcgtcg ccgacgccga cggcgaacgc
      961 gacgacgtca tgcggctgat cgccgcgaac tcgcggacgc ccggggagcg ccgaggtgac
     1021 ctgcgggcgc agttcgcggc caaccacgtc ggagcccggc ggctgcacga gctcgccgcc
     1081 cggatgggcc cggcgcggct gcacgaggcg atggctgctg tctgcgacta ctccgaccgg
     1141 cgggtccggg cggctgtgca ggagatcccg gacgggtgct accggtatcg cgacgtcctg
     1201 gagatcggcg acggggtgac gatccgcgcc accgtcacgg tcgcgggcga tgaggtgacg
     1261 atcgacttcg acggcaccga tgcccagatt ccggtgaacc tcaacgcggt gttcgcggtg
     1321 acccagtcct gcgcgatgtt cgtgttccgg atgctgaccg acccggacgc cccacccaac
     1381 gccggctgct accgggcgct gcatgtgcgc gcaccggagg gctccgtggt gcacgcacgc
     1441 ttccccgcac cgacggccgc cggcaacgtc gagaccagcc agcggatcgt cgacgtgctg
     1501 ctcggcgcgt tcgcccaggc gatgcccgag tgggtcccgg cggccagtca aggcacgatg
     1561 aacaacctgc tcattggcgc cggtgccggt catcccttca gctactacga gacgctgggt
     1621 ggcggcgagg gcggcactcc cagccgtgcg gggatgtccg gcgtgcatac cgggatgacc
     1681 aacacccaaa acacacccgc cgaggcgatg gagctggatt acccgctgcg ggtgtggcga
     1741 tacgagctgc ggtcctcctc tggaggcgcc ggtcagcatc ccggcggcga tggcctgatc
     1801 cgcgaggtcg aggtgctggc cgactgcacg ctgacggtgc aatccgaacg ccgcgaacat
     1861 cccccgtggg ggctgcaggg cgggcattcc ggcgcggtag gccgcaacat cctgtgccgc
     1921 tcggacggaa ctgaggtcga gctgcccagc aaaggcacct ggcaactaca ccgcggcgac
     1981 cggatccgca tcgaaacccc cggcggcggc ggctggggaa caccctgacc gcaagatcac
     2041 cgggcaagta gctgctcgac gtactctgcg ccgaggcgat acccggtggt gagcgcgaag
     2101 accagcacta ccaacagcgt gaacaccaac gcccaacgga tcgtgatcag tcctctccac
     2161 ttccagagtt cccggaactc ccatgcgtga ccggtagcat atgccgactg tgttgcagcg
     2221 tgagtgcttg tccccgcaaa tgagttcaag cattccgtac atgcatgtgt acttgcatca
     2281 cttgcacgtg catctactct tgaatcggga agcagtatat gcaactctga gtcagcaacc
     2341 gccacctgcc aggaggtgct gagtaatgag cgagccagat cgttctttaa ttcctgacgc
     2401 gccacatgga acgctagccg gttatcgaat gggttgccgc tgtcagtgtt gcttagcagc
     2461 aaatcaggct caagcggagc tttctaaacc cgcagcgaaa cctaaagaga caccaagggc
     2521 atcacttctt tgatgatccg gggaagccga aacaattact cgcatccctt cacggccttt
     2581 ccggtgtgtc tcgatcacgt agtacgtctg ccgcagcctc ggcgaggatc agggtcagct
     2641 ccatgaggtc agcccgttcc atatgagtgc gaagggctag cgcggtagcg gcagggtcat
     2701 cgaggagaac gggcagggtg cgaggccggc agccggtagt gcccggccgt ccgaactgcc
     2761 gcccgtgggg cacatcggcc tgcggatcgc gggtgtcctg ggctcgcctg ccgaacgtca
     2821 ccggtggagc gagagagacg agggggctgc gcggtgccag cgtttggaga gaattccgtg
     2881 cggccacgac ttcacctgcc gaggatcggg ggcatgcacc ttgatgttgt gttcatcggc
     2941 tcccgactgc aaagcgttac gtcgtatcgc taaccgtcac tgtcgatgat ccactctgca
     3001 ggcacaagat caacggcgag ttcgtgaatc ttgcgcgcgt ccgacgatga ggtggtcgag
     3061 ccccagccga ccggagcccg acacggcgag caccaggctc agcagtccga gtgcgatgac
     3121 cagctcgggt ccggtgtagt cgagcgcata aaggccaccg tgatgcacga agatccaggc
     3181 gcctgccatg ttcagcgcca tcaggacgcc gactggcagg accgccaggc cgagaatcat
     3241 cgcaacaccg ccgacgaact cgaacagcat gttcgccggc ccggtgatcg ccgccagcgg
     3301 gaccccggat ttctcgaaca gcgccccgac gcccgcgatg ctgccacctg cgaagtcgta
     3361 ctcgagcttg gcgtgcgcca ccatcagcac cccgagcccg attcgcgcca ggaacagcac
     3421 gaggtcacga gcgacagaag cggtcgcggt gcgcgtgcca acgtcagata tgcctgggag
     3481 cgtcatggca atggtgtcct ttcggtccgc cgacaatgca cgacgacgtc gaggtgccgc
     3541 cgccagtact cacatgactc cgacggcgtc agttactcat cgcgccagac gggttggcga
     3601 aatcgggcgt gacgtaacaa ccacgtggct gcaggtctcg tttccgcgcg ccgcgcacgt
     3661 caaagaactg ctcggtgggg agccccggcg cgaacgacaa cgcctccgga tagcgcgcga
     3721 cgtgatctag ttggggaggt tcatccacgt cagcgccggg tcctcgaggg aaccgtgcag
     3781 atcagctgtg tcgagcatgc cacgccacct ccgccgtgcg cagcccgctc gcggcgttga
     3841 ggtcggaaca gcccgcgagg gtcatggctt cgctgagctc cgcgtggatc aacgtaagta
     3901 cctgccgcac acccgcctca ccgtctgcgg cgaggcccca cagcaccggg cggcccacca
     3961 gcaccccgga ggcgccgagc gccaacgccc gcagcacatc cgttccaccg cgcactccgc
     4021 tgtccagcag cacctcgcac gcgtcgccga cctcctcgac caccgcaggc aacgcggcga
     4081 cgctcggcgg cgctgcgtcc agctggcgtc ctccgtggtt cgacacgacg accgcgtcgg
     4141 caccgacgtc caccgcgagc cgagcgtccc tcgggtcgag gatccccttg atcaccagcg
     4201 gaagcgtc
//
LOCUS       DASVXZ010000621         2300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1234494, whole genome shotgun sequence.
ACCESSION   DASVXZ010000621 DASVXZ010000000
VERSION     DASVXZ010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234494"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1229
                     /locus_tag="VF788_13065"
     CDS             <1..1229
                     /locus_tag="VF788_13065"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8935092.1"
                     /translation="RRTLGAARAENRGAVMIPTVDPYPAYRTLREQHPVYWDSDLDAF
                     LVSSYAEASTVLRGPGWSSDPRRNSALAARFDRAEVGSQALRTTLLTMDPPDHTRLRR
                     LLAPPFTPRAIEALRPRITAVVRSALADLDKADEVDVITDIGYPIPLAVMCELLDIDI
                     EGAQLLRTETPKLVGILEFDPGEEAVLAAEEGTASLALHLLPILGDRRHRPGEDLASQ
                     LLRLGEGGDELGLDEVLATCILLLTAGHETTANLIGNGVLTLMEHPDQLHLLQRDPEL
                     IKPAIEEILRFECPAKIVGRTNLIDRQLGGHTIRAGQRVLVLLGAANRDPEQFPDPEC
                     FDITRPPVPHLAFGAGPHFCLGAALSRAEAQETLRLLLPLLSKWRLAPGAPAWRVSDT
                     FRALEKLPLLSPAAQS"
     gene            complement(1241..1819)
                     /locus_tag="VF788_13070"
     CDS             complement(1241..1819)
                     /locus_tag="VF788_13070"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935093.1"
                     /translation="MTENAQPFWRGINHLALITNDMDATTRFWHGVLGARLVAHLGHE
                     SFRHYFFEFGDEQTVAFFEYRGVAVERFQVPAGVPDRRKTQFDHLSFNLPDEHALELL
                     RSRLKSHGCEVTDVIDHGFVRSIYFNDPNGIALEASWWVVDPTGRIADYDDPTLFSDP
                     DPVPAVRELARDGVLASVPQTTLSSDEIVDPA"
     gene            complement(1858..>2300)
                     /locus_tag="VF788_13075"
     CDS             complement(1858..>2300)
                     /locus_tag="VF788_13075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935094.1"
                     /translation="VGKAIAGAMVAMLKNVGVKLDIRQVPTADFSSIISGRKFDMFYS
                     SIVQNDPFGMAYICQLYCSDSQLNLSGTNDPAFDPQVKSVNTLPTAQEQFAKGADVEA
                     QAFKTYGIMPTLTLPAITAVKHGLANYGSARFFTTTPENIGWQK"
BASE COUNT          407 a          785 c          712 g          396 t
ORIGIN      
        1 gacgccgaac actgggcgcg gcaagggctg aaaaccgtgg agccgtgatg atccccaccg
       61 ttgatccgta ccccgcctat cgcaccctgc gggaacagca tccggtgtac tgggacagcg
      121 acctggacgc gttcctggtc agctcctacg ccgaggcgag caccgtgctg cgcggtcccg
      181 gatggagcag cgacccgaga cgcaactccg ctctggccgc acggttcgat cgggccgaag
      241 tcggatccca agcgctgcgc acgaccctgc tgacgatgga tccgcccgac cacacccggc
      301 tccggcggct cctcgcccca ccattcactc cccgggccat cgaggcgcta cgcccccgga
      361 tcaccgcggt cgtccgctcc gcccttgccg atcttgacaa agcggacgag gtcgacgtca
      421 tcaccgacat cggctatccg atcccgctcg ccgtgatgtg cgagctgctc gacatcgaca
      481 tcgagggcgc gcagctgttg cgtaccgaga ctcccaagct ggtgggaata ctcgagttcg
      541 accccggcga ggaggcagtc ctcgcagctg aggagggcac cgccagcctc gcgcttcatc
      601 tgctgcccat tctcggcgac cgtcgtcacc ggcccggcga ggatctggcc agccagctgc
      661 tgcgcctcgg agagggcggc gacgaactcg gactcgacga agtgctagcc acctgcatcc
      721 tgctgctcac cgcggggcac gaaaccaccg ccaacctgat cggcaacggc gtcctcaccc
      781 tgatggaaca ccccgaccaa ctccacctgc tccagcgtga tcccgagctg atcaagccgg
      841 cgatcgagga gatactccgg ttcgagtgcc ccgccaagat cgtcggccgt actaacctca
      901 tcgaccggca actaggtggg cacaccattc gcgccggcca gcgcgtgctc gttctgcttg
      961 gcgcagcgaa ccgggatccg gagcaattcc ccgaccccga gtgcttcgac atcacccgac
     1021 ctcccgttcc gcacctcgct ttcggtgcgg gaccgcactt ctgcctcgga gctgccctgt
     1081 ctcgcgcgga ggcccaagag accctgcggt tgctcctgcc gctcttgagc aagtggcgac
     1141 tcgcacctgg agcccccgcc tggcgagttt ccgacacctt ccgcgcactc gagaagctcc
     1201 ccctcctcag tcccgcagct caatcctgac tggcactcga tcaagccggg tcgacgatct
     1261 catcagagga cagcgtcgtc tgcggcaccg aagcgagcac cccgtcgcgg gctagctccc
     1321 gcaccgccgg caccggatcg ggatcggaga acagcgtggg gtcgtcgtag tcggcgatcc
     1381 gcccagttgg gtcaacgacc caccaggatg cctcgagcgc gatcccgttg gggtcgttga
     1441 agtagatcga gcgcacgaag ccgtggtcga tgacatcggt cacctcgcag ccgtgcgact
     1501 tcagccggct ccgcaacaac tccaaggcgt gctcatcagg aaggttgaac gacagatgat
     1561 caaactgcgt cttgcgccgg tccggcaccc cggccggcac ctgaaagcgt tccacggcaa
     1621 cgcctcggta ctcgaagaac gccacggtct gctcgtcacc gaactcgaag aagtaatggc
     1681 ggaaggattc gtggcccagg tgcgcgacga gccgcgctcc gagcacgccg tgccagaacc
     1741 gcgtggtggc gtccatgtcg ttggtgatca gggcgagatg gttgataccc cgccagaagg
     1801 gctgagcatt ttcggtcata gtccaagtct agaaagcagc gccatagaag tccgccgtta
     1861 cttttgccag ccgatgttct cgggggtggt ggtgaagaag cgcgcgctgc cgtagttggc
     1921 caggccgtgc ttcaccgcgg tgatcgctgg cagggtcagc gtcggcatga tgccgtacgt
     1981 cttgaaggcc tgagcctcga cgtcggcgcc cttggcgaac tgctcctggg cggtgggtag
     2041 cgtgttcact gacttgacct gcgggtcgaa cgccgggtcg ttggttccgg acaggttgag
     2101 ctggctgtcc gagcagtaga gctggcagat gtaggccatg ccgaacgggt cgttctggac
     2161 aatgctcgag tagaacatgt cgaacttccg cccgctgatg atgctggaga agtcggcggt
     2221 cggtacctgt cggatgtcca gtttgacccc gacgtttttc agcatcgcga ccatggcgcc
     2281 ggcaatcgcc ttgccgaccg
//
LOCUS       DASVXZ010000622         1510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_931399, whole genome shotgun sequence.
ACCESSION   DASVXZ010000622 DASVXZ010000000
VERSION     DASVXZ010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931399"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VF788_13080"
     CDS             <1..220
                     /locus_tag="VF788_13080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935095.1"
                     /translation="PGRELHQPTRARERAMRKFRSPGGAQRFLAALSRISPHFRPRRH
                     RLSAEEYRREMDTRFTTWNEVTGTAIAA"
     gene            517..1287
                     /locus_tag="VF788_13085"
     CDS             517..1287
                     /locus_tag="VF788_13085"
                     /inference="COORDINATES: protein motif:HMM:NF024752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8935096.1"
                     /translation="MTGLSNEQLTELVVRVHAACGGGLVSRGRPYALGLFGSVALVVC
                     LLRTNITQAFAGAIFGVSQSTVSRRWDLLRPLIGPVLAEFVPDPAEVVGAGTVLVDGT
                     ICPTWDWRHVPDLYSAKAGYPGMNLQIAATLSGRLAAVGPLPVHGARHDAYAFDASGL
                     AAMLTDLSTVADLGYVGVPGIELVPVKRLPGDDLTTSQIEFNTALSKIRAAVEHAIAH
                     LKAWRMLSEEGGRYRAPIEKYQSMLQAVTGLYFFAACE"
     gene            1293..1510
                     /locus_tag="VF788_13090"
                     /pseudo
     CDS             1293..1510
                     /locus_tag="VF788_13090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696205.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6444 domain-containing protein"
BASE COUNT          277 a          493 c          474 g          266 t
ORIGIN      
        1 accgggccga gaactccacc agcccacccg agcccgggag cgagcgatga gaaagttccg
       61 ctccccgggc ggggcgcagc ggttcctggc cgcgttgtcc cggatatcac cgcacttccg
      121 gccccgccgc caccggctat ccgccgagga ataccgacgc gagatggaca cccgattcac
      181 cacctggaac gaggtcaccg gcacggccat agcggcctga catgggcccc gcagaccgac
      241 tcacccgatc caaccatgcc cgcaccgcca gacaacttca gcaagttgac ggtgccatcc
      301 aaaccatcga gacaggataa caggaggcta attcacaagt cgcctgagaa tagcgcgctc
      361 aggttcggta gttattcggc cggggaccgg ctcacaattt ctgcacaatc tgtgactgat
      421 gcgtgtcatg tttgaaagac aacggctcct tccgttttgt ttcggtgtcg ggcagacaac
      481 gaaatctcca cggaggagcc gttgcgatat gaggctatga cagggctgag caacgagcaa
      541 ctcaccgaat tggtggtgcg ggtgcatgct gcctgcggtg gggggttggt ctcccgcggc
      601 cgcccgtatg cgctgggcct gttcggctcg gtggcgctgg tggtctgttt gctgcgcacc
      661 aatatcactc aggcctttgc cggggcgatt ttcggtgtca gccagtccac tgtgagccgg
      721 cgctgggatc tgttgcgccc gctgatcggg ccggttctcg ctgagtttgt gcccgacccg
      781 gccgaggtgg tgggagcggg aaccgtgctg gtcgatggca cgatctgtcc cacctgggac
      841 tggcgccacg ttcccgatct gtattcggcc aaagccggct accccgggat gaacctccag
      901 atcgccgcta ccctgtccgg gcgtctggcc gcggtgggcc cgctcccggt gcacggtgcc
      961 cggcacgacg cctacgcctt tgacgcctcc ggcttggccg ccatgctcac cgacttgtcc
     1021 accgtggccg acttgggcta cgtcggtgtc ccaggtatcg aactcgtccc cgtcaaacga
     1081 ctccccggcg acgacctcac caccagccaa atcgaattca acaccgcatt gagtaaaatc
     1141 cgcgccgccg tcgagcacgc aatcgcacac ctcaaggcat ggcgcatgct cagcgaagaa
     1201 ggcggccggt accgcgcacc gatagaaaaa taccaaagca tgctacaagc agtcacagga
     1261 ctctacttct tcgcggcttg tgaataagcc cctcggaacc gccgtcgtcg gattcgccgt
     1321 ttatcaagcc agcgccgagg tcattgcggc gcaagagcgg gcgtaagcca ggcgggcagg
     1381 ctgggcatcc gggatcgacg ttggcgcagg tctgcgatcc gcccgagcgg ctgaggtatg
     1441 agcctggccc gtgcgctggg tgcggcgccg atctgagcgg cgcgccggag gtcggcatgg
     1501 agaagcggca
//
LOCUS       DASVXZ010000623         1920 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1469034, whole genome shotgun sequence.
ACCESSION   DASVXZ010000623 DASVXZ010000000
VERSION     DASVXZ010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1469034"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1489)
                     /locus_tag="VF788_13095"
     CDS             complement(164..1489)
                     /locus_tag="VF788_13095"
                     /inference="COORDINATES: protein motif:HMM:NF033550.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEX8935097.1"
                     /translation="MDHATTILFDLPGVRVRYVDRDAFGDRIVHVETADEFASGCPSC
                     GVVSTSVKEYVTSTPRDLPYGEKGISVVWHKRRWRCTEPACARLSFTEAIGEVPAGRR
                     TTGRLRRAIGSAVGDACRSVAEVADSFGVSWPTAHAAVVADAEQTAGEPEPTAVLGID
                     ETRRGKPRWARDEESGRWVRTDAYDTGFVDLAGCQGLLGQVSGRTSSCVVTWLRARPP
                     EFREAILFVAIDPAAVYAKAIRTPGLLPNATVVVDHFHLVKLANDAVTKVRRRVVWEQ
                     HGRRGRKIDPAWANRRRLLTARERLSTTAFTTMWNSLIDSDESNQVLTAWIAKEELRS
                     LLALARTGAYRNQIRQRLYAFYYWCATADIDELSTLAGTVETWWPAIEAFIDSGVTNA
                     RTEGINRLVKQVKRSACGFRNPANGHRRIRFHCTRKHRAATAASRSLPA"
     gene            complement(1577..>1920)
                     /locus_tag="VF788_13100"
     CDS             complement(1577..>1920)
                     /locus_tag="VF788_13100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935098.1"
                     /translation="MNDMGGNRVIGLDLGVTSAHSAVVLDATGQILLRRRVVSTVDSL
                     AVLEQAALQGTPEQTRLTVVIEPTGPMWLPIAVYFGRQGHTVVRVSSAKAADLRRFLS
                     ALRSWPGNAGF"
BASE COUNT          342 a          654 c          609 g          315 t
ORIGIN      
        1 ccagtagcag cgaatcgtgc accgtcttct cgctgatcgc catcgtgccg gacaaggagt
       61 tcaaaaatcc gattttgatc gaattcccgg aggtatcgac acaggaaccc gccgacgatc
      121 cgccggggcc agagcctccg acccgactac cggctcttca attttaagcg ggcaatgatc
      181 ttgatgccgc tgttgctgcc cggtgtttcc gggtgcagtg aaaccgtatc cgacggtggc
      241 cgttggcggg gttgcggaac ccgcacgcgg agcgctttac ctgcttgacg agccggttga
      301 tcccttcggt gcgggcgttg gtgacgccgg aatcgatgaa ggcttcgatg gcgggccacc
      361 aggtttcgac ggtgccggcc agggtgctca gctcgtcgat gtcggcagtg gcgcaccagt
      421 agtagaaggc atagagccgc tggcggatct ggttgcggta cgcgccggtg cgggcgagcg
      481 cgagcaggct gcgcagttct tccttggcga tccaagcggt gagcacctgg ttggattcat
      541 cggagtcgat caggctgttc cacattgtgg taaacgctgt ggtggacagg cgttctctgg
      601 cggtcagcag ccggcggcgg ttggcccagg cggggtcgat cttgcggcca cgacggccgt
      661 gctgttccca gaccacccga cgccgcacct tggtcacggc gtcgttggcg agcttgacaa
      721 ggtggaagtg gtcgacgacc acggtggcgt tgggcagtag cccgggggtg cggatcgcct
      781 tggcgtagac ggcggccggg tcgatcgcca cgaacaggat tgcctcgcgg aactcgggtg
      841 ggcgtgcccg cagccaggtg accacgcaac tgctggtgcg gccactgacc tggccgagca
      901 gcccctggca gccggccagg tcgacaaagc cggtgtcgta ggcgtcggta cgcacccacc
      961 ggccggattc ctcgtcacga gcccacctgg gcttgccgcg acgggtctca tcgataccca
     1021 gcacagcagt cggctccggc tcgcccgcgg tctgctcagc gtcggccacc acggcggcgt
     1081 gcgcggtcgg ccaggacacc ccaaagctgt ccgcgacctc ggccaccgac cggcacgcat
     1141 ccccgaccgc cgacccaatc gcccgccgta accgcccagt ggtgcggcga ccggccggaa
     1201 cctcgccgat cgcctcggtg aacgacaacc tggcacacgc cggctcggtg caacgccacc
     1261 gccgcttatg ccagaccacc gagatcccct tttccccata aggaagatcc cgcggcgtac
     1321 tggtgacgta ttccttcacc gacgtcgaca ccaccccgca gctcgggcag ccactcgcga
     1381 actcatcagc ggtctccaca tgcacgatgc ggtcgccgaa agcatctcga tcaacatatc
     1441 ggacccgaac tccgggcagg tcaaacagaa tcgtcgtagc gtggtccaag cccgtggcct
     1501 ccctcgtctg ctgccgtagc aacagcaaga cttcaagagg tcacgggcgc ctcagcacag
     1561 gcgcgccgaa cgcaggtcag aaaccggcgt tgcccggcca agatcgaaga gccgacaaaa
     1621 accgacgcag gtcggccgcc ttggccgagg acacccgcac caccgtgtga ccctgtcgac
     1681 cgaaatacac agcgatgggc aaccacatcg gcccggtggg ttcaatgact accgtcaacc
     1741 gcgtctgctc cggggtgccc tgcagcgcgg cctgttccag cacggcgagg ctgtccaccg
     1801 tcgagacaac tcgccgccgc agcaggatct ggcccgtcgc gtccagcacg accgctgaat
     1861 gcgcgctggt cacgcccaga tccagaccta tcacccggtt gccccccatg tcgttcatgc
//
LOCUS       DASVXZ010000624         2165 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1469130, whole genome shotgun sequence.
ACCESSION   DASVXZ010000624 DASVXZ010000000
VERSION     DASVXZ010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1469130"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VF788_13105"
     CDS             complement(<1..636)
                     /locus_tag="VF788_13105"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX8935099.1"
                     /translation="MEKPIKIAIAGGGYGRKVALPVYAELEEFEPVAVWSRRPERAGE
                     LAEEAGVGLGTADIDELLSVPGLEALHVATPVATHAQFAVAATERGLHVLCEKPLADN
                     LDNAHRIVAAIRSAGVVGMVDYELRMKETRRRVIERAREVVGRPRMASASLVQSDHAD
                     PDSRPYTWVHDDRLGGGRLQGYGVHDLDLLLEIFPDVDAVAAATEVGVPVRR"
     gene            complement(709..1161)
                     /locus_tag="VF788_13110"
     CDS             complement(709..1161)
                     /locus_tag="VF788_13110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935100.1"
                     /translation="MSLTNVWLRTLADGLIRADQIVGIHTHQTPALTGKASHWLLDVV
                     LPTPIGNGRPDGWSIGALHRTLIQAPMPPTDAPSALARLLAQLDAIQAAGVITTTIAT
                     LDSTASDSDTVTASDIVDTQTAAFTPIRFRFIPFPAAELGHHTGPEYL"
     gene            complement(1395..1826)
                     /locus_tag="VF788_13115"
     CDS             complement(1395..1826)
                     /locus_tag="VF788_13115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015102829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEX8935101.1"
                     /translation="MLMRTDPFRELDRLTQQLFGTNGTTSRPGVMPMDAYRAGEQFVV
                     HFDLPGVDPSSVDLNVEHNVLTVKAERAPSYGDDVELQVAERPRGVFSRQLFLGDTLD
                     TERVEASYDAGVLTLRIPIAEKAKPRKIEISGGSTPKQINV"
BASE COUNT          342 a          662 c          763 g          398 t
ORIGIN      
        1 cctgcggacg ggcacgccga cttcggtggc ggcggccacg gcatcaacgt cgggaaatat
       61 ttccagcaag aggtcgaggt cgtgcactcc atagccctgg agccgcccgc ccccgagccg
      121 gtcatcgtgc acccaggtgt agggacgtga gtccgggtcg gcgtggtcgg actggaccag
      181 cgaggccgac gccattcgtg gtcgtcccac gacttcacgc gcacgctcga tgacccgcct
      241 gcgggtttcc ttcatccgca gctcgtagtc gaccatgccg accacgccgg ccgaccggat
      301 ggccgccacg atgcggtgcg cattgtcgag attgtcggcc aggggtttct cgcacagcac
      361 gtgcagcccg cgctcggtgg cggcgacagc gaactgtgcg tgcgtcgcca cgggggtggc
      421 gacgtgcagc gcctccagcc ctggcaccga cagcagctcg tcgatatcag cggtaccgag
      481 ccccacgccg gcctcctcgg ccagctcccc ggctcgctcc ggtcgccgcg accacacggc
      541 cacgggctcg aactcctcca gctcagcgta gacgggtagg gcgactttcc tcccgtagcc
      601 accgccggcg atggcgatct tgatcggctt ttccacgacg ggctcctccg gtcaacgaac
      661 ctaccgcagg gctgaacagt ctcccgtttt tggcgggcac ttccacggct agaggtattc
      721 gggtccggtg tggtggccga gttccgcggc ggggaaggga atgaaccgga agcgtatggg
      781 ggtgaaggct gcggtctgcg tatcgacgat gtccgacgcg gtaacggtgt cgctgtcgct
      841 ggcggtggag tcgagcgtgg cgatggttgt ggtgatcact ccagcggcct ggatggcgtc
      901 gagttgggcc agtagccggg cgagagctga gggggcatcg gtgggcggca tgggggcttg
      961 aatgagggtg cgatgcagcg cgccgatgga ccaaccgtcg ggacgtccat taccgatggg
     1021 agtgggcaaa acgacgtcga ggagccagtg cgaggctttg ccagtcagcg cgggcgtctg
     1081 atgagtgtgg atgcccacga tctggtccgc gcgaatcaac ccgtcggcaa gcgtgcgcag
     1141 ccacacgttg gtcaggctca ccgtgtcctc cttgccgcgg ccacgccagt gacggttgcc
     1201 ctggccgacc ttcggtctag gaaagcacag gctgggctcg gtccggaccg agcccccggc
     1261 cgcagactcg atctgggtgt atcgctggac accaacaccg ggctgtcact cgagggtgcc
     1321 ccagctgggt tgcctggggc acccccgagt tggcacaggg actgaccggc gatctattcg
     1381 tggtggggtg caggtcagac gttgatctgc ttgggtgtgc tgccgccact gatttcgatc
     1441 ttgcggggct tggccttctc ggcgatgggg atacgcaggg tcagcacccc ggcgtcgtag
     1501 ctggcctcga ctcgctcagt gtccagggtg tcgccgagga acaactgccg gctgaacact
     1561 ccacggggcc gctcggcgac ctgcaactcg acgtcgtcgc cataggatgg ggcgcgctcg
     1621 gctttgacgg tgagcacgtt gtgttcgacg ttgaggtcga ccgaggaggg gtccaccccg
     1681 ggcaggtcga agtgcacgac gaactgttcc ccggcccggt aggcgtccat gggcatgacg
     1741 ccggggcgtg aggtggtgcc gttggtgccg aacagctgtt gggtcagccg gtccagctcc
     1801 cggaacgggt cggtacgcat cagcatcgag gatctctcct tcctgagcgt catcacgacg
     1861 cggtcggtac gtactgctgt attcgtggcg caatataccg tcaacgggaa gtcctgtgaa
     1921 gatgttttcg acgattgata gttcttgaca tcactaggcg caggtatgca tcgaagcttg
     1981 ggtgtacacg ctggtcatgg ggcttcccat ggggtagtcg gtgtcatggg ggcgcccagt
     2041 actccccaat gcactccggc ctggatgcgg cttgtccacg gtggtcgggg cccagcgcgg
     2101 cacacggggg gatagacaac ccgggcgggg ctgctatagg gtctaccgcg ctacagcacg
     2161 atgtt
//
LOCUS       DASVXZ010000625         2029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_877029, whole genome shotgun sequence.
ACCESSION   DASVXZ010000625 DASVXZ010000000
VERSION     DASVXZ010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_877029"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(251..1573)
                     /locus_tag="VF788_13120"
     CDS             complement(251..1573)
                     /locus_tag="VF788_13120"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8935102.1"
                     /translation="MQSRLERRCIGLDVHREFAQVAIWQGGVVRQAGRFPATPEGVRA
                     FAQGLGPADEVALEVTGNTWAIATVLASRAGRVVVSNPAKTRAIAEAKVKTDKVDAEI
                     LAQLLAADYLPAVWLPDAATSALRRQVLRRAQLVRQRTRLKNQVHAILHRNLIPRCPA
                     ADLFGHKGRAWLADQDLPPDEQAAAVALLRQLDFHAQELHLLDTDLGQVGLSRPEVLR
                     LMTVPGIDATVALSIVAAVGDFTRFRTPEKLVAYLGLNPKVRQSGGQPARHGRITKAG
                     AAHARGMLVEAAWSTSKAAGPLRAFYQRVQARRGMHIAAVATARKLAVLCWHLIIKGE
                     DYAFAQPSLVAHKRRKLELRAGHASARGRKGTASGYSLTAVRTAERQLAAQAETAYRT
                     MVAAWQPRKPTTPTRASKARAAGSAVSVAATNGARLFSPSSGNAARQG"
     gene            1773..>2029
                     /locus_tag="VF788_13125"
     CDS             1773..>2029
                     /locus_tag="VF788_13125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935103.1"
                     /translation="MPTNAPPKAKRTSETDDAGSFIPVTYVLLLAVGFRSGATAPVFS
                     DVPVGSRVVDPVVQALSLTDIVVSATITALLLALTIQIYKR"
BASE COUNT          330 a          692 c          665 g          342 t
ORIGIN      
        1 tttgcgtgtc acatggtgga gcagtatgcg acggatgaaa ttgtcaaccc cgcgacactc
       61 tgcgaggttg gggtttgtct tgaaccattc ctttcgcctg gcggcagcgg cttaagacgt
      121 cggtccggag ccggggtcaa ggtggagcgc ccagctggac gaacgacctt gaccccggcg
      181 aggaccggcg tagcgtcggg cggcggtggg cgtggttcga ccccgtcgcg aagagcaggg
      241 taaggggctg ttagccctgc cgcgccgcgt tgcccgatga gggactgaat agtcgcgccc
      301 cgttggtggc agccacgctc accgccgacc ctgcggcgcg ggctttgctt gccctggtgg
      361 gtgtggtcgg tttgcggggt tgccaggcgg cgaccatggt gcggtaggcg gtttcggctt
      421 gagcggccag ctggcgctcg gcggtgcgga ctgcggtgag cgagtatccc gatgcggtgc
      481 ccttgcgccc gcgcgcggag gcatgcccgg cacgcagctc aagcttgcgt cgtttgtgtg
      541 ccaccaggga aggctgggcg aaggcgtagt cctcaccctt gatgatcaga tgccagcaca
      601 gtacggcaag tttgcgcgcg gtggcgacgg cagcgatgtg catgccgcga cgggcttgca
      661 cccgctggta aaacgcccgc aggggacccg cggccttaga tgtcgaccag gccgcctcca
      721 ccagcatgcc gcgggcgtgc gcggcgccgg ccttggtaat ccgtccatgc ctagcgggtt
      781 ggccaccgga ctgccggact ttggggttaa gccccaggta ggccaccaac ttttctgggg
      841 tccggaatcg ggtgaagtct ccgactgcgg ccacgatcga cagcgccacg gtcgcgtcga
      901 tgcccggcac ggtcatcaac cgcagcacct ccgggcggct caaccccacc tggccgaggt
      961 cggtgtcgag aaggtggagc tcctgggcgt ggaagtccaa ctgccgcagc agcgccaccg
     1021 cagcagcctg ctcgtcgggg ggcaggtctt ggtcggctaa ccaggcgcgg cctttgtgcc
     1081 cgaacaaatc cgccgctggg cagcgcggga tcaggttgcg gtgcaagatc gcatggacct
     1141 ggtttttcaa ccgggttcgt tgccgcacca gctgcgcccg gcgcagcacc tggcggcgca
     1201 gcgcgctggt cgctgcatcc ggcaaccaca ccgcgggcag gtaatccgcg gccagcagct
     1261 gcgccaagat ctccgcgtcg accttgtcgg ttttgacctt cgcttcagcg atcgcccgag
     1321 tcttggccgg gttggacacc accacccgcc cggcccgact ggccagcacc gtcgcgatcg
     1381 cccaggtgtt gccggtcacc tccaacgcca cctcatcggc cgggcccaag ccctgcgcga
     1441 acgcccgcac cccctccggg gtagcgggaa accttccggc ctgccgcacc accccgcctt
     1501 gccaaatcgc cacctgcgcg aactcgcggt gcacatccag cccaatgcac cgacgctcta
     1561 accgggattg catcactgtt ctgcctccaa cgatcaaata ctgtgatcgg gagtgagtgg
     1621 gcgaaacgac acctacggat ccgcgcgcgc agcgcaaccg ggcaagtcgc aggggcggcc
     1681 acctaacaac acgggctcgc agcccaccgc gtaacaccgg cctgcccacc ctgcttcact
     1741 cccagcgccc ctgtcccgga cggtcacacc gtatgccgac caacgccccg ccgaaagcga
     1801 agcgcaccag cgagaccgac gacgctggat ctttcatacc ggttacctat gtcctattac
     1861 tcgccgtagg tttccggagc ggcgccacag cgccggtgtt cagcgatgta ccggtcggta
     1921 gccgggtcgt agatccggtg gtgcaagctt tgagcctcac cgacatcgtg gtctccgcaa
     1981 cgatcactgc gctgctgctc gcgctgacca tccagatcta caagcggca
//
LOCUS       DASVXZ010000626         2065 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1289734, whole genome shotgun sequence.
ACCESSION   DASVXZ010000626 DASVXZ010000000
VERSION     DASVXZ010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1289734"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            437..631
                     /locus_tag="VF788_13130"
     CDS             437..631
                     /locus_tag="VF788_13130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8935104.1"
                     /translation="MSFADKFRHKAQELRGRIKRNTGEVTGDRRLQAEGTAEEAMGNL
                     KQAGEKIKDAFRGRGTRGRY"
     gene            complement(688..1563)
                     /locus_tag="VF788_13135"
     CDS             complement(688..1563)
                     /locus_tag="VF788_13135"
                     /inference="COORDINATES: protein motif:HMM:NF020416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase/BAAT C-terminal
                     domain-containing protein"
                     /protein_id="HEX8935105.1"
                     /translation="MLNGRLRDHVLVEYRLSNPEGLLVVPETGVARCAVLVLSGSSGR
                     VEVDRVRLLADRGAVALSIRWFGDAGQPPGICEVPLETFLPALDRLVSLSDQLAVLGV
                     SKGAEAALLLACRDARIRAVGALSPSSVVWANVGPGIDGAHQPYRSSWTEGGVPIPFV
                     PYDDTWVLSSGGGQAVYRGLYEQSLRAFPMRVHEAAIPVERIAGRVLLTAGGNDLVWP
                     SDWFAAQVRARRAAHGLSTEVITSVPAGHRVSLPGEPASPTGGRRMARGGTAKADAAL
                     GLRVWPALLALLNLS"
BASE COUNT          421 a          674 c          652 g          318 t
ORIGIN      
        1 actcgtcttc aatgaacttc cgtgccacgg cgatgggcac gcccagcgct gggtgtcgtt
       61 gctggtaagc gtccaatcga tcaagcttgg cccgcactcc gctggtaaca ctctcatcgg
      121 gtcgactcat gagtcagctc ctgaagaaaa gtcccgcaga caatcatgac acgtgtgatc
      181 cccgatttgg gtaaccgcgt cgcggctcgt agcgacgagg tcggaggcgt cccagaggcg
      241 ccgtgaagct agccgtcgat ggtggcgcac ctttgatcgc ataggtggcg cgttctcgca
      301 gggtgggcga gccggtggtc gagcaatctc agccgatcgg aacaggactg gcacggttcc
      361 cctcggggta tgtcttggag agtcggtggt ccgagcacgg ctccgcgtga ccccgacgac
      421 gaggtaggag gttgtaatga gcttcgcgga caagttcaga cataaggctc aggagctgcg
      481 cggccgtatc aagcggaaca ctggcgaggt caccggcgac aggcgacttc aagccgaggg
      541 cacggccgag gaagcgatgg gcaacctgaa acaggccggc gagaagatca aggacgcatt
      601 tcgcgggcga ggtactcgcg gccggtacta gcagtaatct gcctcaacct aggcagcaag
      661 agcgagcgcc agccgcattt tgcgccgtta gctgagattc agcagagcca gaagcgctgg
      721 ccagacgcgc aggcccagcg cggcatcggc cttggctgtg ccgccccgcg ccatccgcct
      781 gcccccggtc ggtgatgccg gttcaccggg cagggacacc cgatgccctg ccgggacgct
      841 ggtgatgacc tcagtactca acccgtgcgc ggcgcgccga gcgcgcacct gggcggcgaa
      901 ccagtccgag ggccagacca gatcgttccc cccggcagtc agcagaaccc ggcccgcgat
      961 gcgctcgacc ggaatcgccg cctcgtggac gcgcatgggg aaagcacgga ggctttgctc
     1021 gtacaagccg cgatatacag cctgcccacc gcccgaagag agcacccagg tgtcgtcata
     1081 gggcacaaaa ggtatgggta ccccgccctc ggtccaggag gaacgatagg gctggtgggc
     1141 accgtcgata ccaggaccca cgttggccca caccaccgac gatggcgaca gcgcgcctac
     1201 cgctcggata cgggcgtccc ggcaggcaag aagtagagcc gcctcagcgc ctttggagac
     1261 accaagcaca gcaagttgat cgctgagcga aaccaaccga tccaaagccg ggaggaatgt
     1321 ctcaagcggc acctcgcaga tccccggtgg ttgaccggca tcaccaaacc aacggatgga
     1381 caacgcaaca gcgccccgat cggccaacag acgaacccga tcgacctcca cccgaccact
     1441 ggacccagac agcaccaaca ccgcgcaccg cgccactccg gtctccggaa caaccagcag
     1501 tccctcggga ttagacagcc gatactccac aagtacatga tcccgaaggc gtccgttcag
     1561 cacagcccct ccaccatgac ctgtgcgggg tcaatgcgcc gcagtaccag gactccgtgg
     1621 gccgagctga cgctccagct agaccgcccg gacgtgtcat ccttcgttgc aacagtgccc
     1681 tcgacatcgt ccgcgggacc gatgtcgggc tgccagcggc taaagtggtg cagcggctct
     1741 atcggaaagc ggcgtcctgc tggtgtggat gacgctgaca tcgccgacta ggagcatccg
     1801 ctgaggctga tggtgcagga agatgagaac cgcatcctgc ccatcgactc caccggccgt
     1861 cgtctgccgg cttggatctt cttatccggg tagggtcaac gccgcagcgg cgtaccgagg
     1921 tcgcggaatc ggcagggcgg tgattttacc agccggtgag ggcagcgtgc atttcccgta
     1981 ccagaatctc ggccggctcg gtggcgctga ccttctgccc accggtcgcg gtgaatcgca
     2041 ccgcgtcgcc agtagtcaag gaccc
//
LOCUS       DASVXZ010000627         2389 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_250195, whole genome shotgun sequence.
ACCESSION   DASVXZ010000627 DASVXZ010000000
VERSION     DASVXZ010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250195"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1100..2017)
                     /locus_tag="VF788_13140"
     CDS             complement(1100..2017)
                     /locus_tag="VF788_13140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935106.1"
                     /translation="MGDKRLVGTPASTDPPGAKAAPPPTGPTALRIVLGTQLRRLREA
                     RGITAAAAGRAIGGSDAKISRMELGRVGFRERDVSQLLTFYGVTHDLEREAFLTLVRR
                     ANVPGWWHQYSDITPSWFDIYLGLEQASSVIRTYQPQLVPGLLQTRKVARAIIQLGHP
                     RRSADDIARRVTLRMARQEILTQPGAPHLVAVLEEISLWRLAGQAAIREQIEHLIKMA
                     ELPNVTLQLIPIYFGELHEAVGGPFTILQFTDRDLPDIVYLEQLTSALYLDKSEDAQH
                     YLAIMDRLCIQAESPTKTIELLNRTLKKI"
BASE COUNT          452 a          697 c          738 g          502 t
ORIGIN      
        1 ttctacgaca atatgcaatc tcaccggtcg tgcactttca cttggacggt gttgtacctc
       61 caccttgctg tcgcggaccg tcacattcag cgagcaactg taactctaag cagccaaaag
      121 cgattaggtg caggagcctg atccctatct tctccgcagg ggaagctttg agcacgggca
      181 ctgctccctt accgtcctcg agtgcgcccc ttgcccactg gtctccctcg ctccgcagca
      241 aaatcggcag agtttgccaa ggcgacacga ccacgtcgag gcatccaccg gacagccggt
      301 cagataccca acgatgaacc aggctcaaca ccggcggcgc attctgcgcg tcctcctcga
      361 cgactctgct gctgtcgcgc tgttctgcgc acacacatgc aaccagctga ccttctgtga
      421 attgatcctc gtcctcgcca aggcggcagc agacgctgcc tccccgccga caaaaggcct
      481 tgggtatccg cctgatccgg ttcgagtgtc gcccgccaca agcatgggac cgacttgaac
      541 cgagtttaca accatgggac cacccggttt gccaattagg gaaccaccgg cgtgccgtgc
      601 gcacacccca atgtctggaa ttgcgagggt ctagggtcgg gttgggccgt ccttgaggcc
      661 tccggcaata gtggaactcg tctctgcgca ttatggacga atgcgttgat tcgtgcttga
      721 tcgagcgtgg gggcagcgcg cacaatgccg ggagttacgt acgacgatca tccgacatgc
      781 caggtccgca acggggtcgc taggtgaaga ttgacgccac cctcatcgaa ccatggccac
      841 cacggtcggt tccggcgcac agcttgggct gccagccagt gcgacgcgct catggtatcg
      901 atgactgtac tcggctgcgg tgctgttcgc ttatctgcaa gcgggcagaa aatggggatt
      961 tagctcgtgg cttggtttcg acgtgactga taacgactat gggtgcggag ctgaagtgtg
     1021 cgcgcgtgcc attggcatta cccgacgatg atagaaatgc ggaatgcctc ggtttcgatc
     1081 gggaccaaag gtgcatcgat tagatctttt taagcgtcct gttaagcagt tcgatcgtct
     1141 tggtcgggga ttcagcttgg atgcacaatc gatccatgat cgcgaggtag tgctgggcgt
     1201 cctcgctttt gtctagataa agagcactgg tcagctgttc aaggtagacg atatctggca
     1261 gatcacggtc ggtgaactgc agaatcgtga atgggccacc gactgcctcg tgcagttcgc
     1321 cgaaatagat cggtatcaat tggagtgtga cgttgggcag ctccgccatt ttgatcaaat
     1381 gttctatctg ttcccgtatc gccgcctgcc cagcgagccg ccacagcgag atctcttcta
     1441 gtactgccac caaatggggc gctccaggct gcgtgagaat ttcttggcgt gccatccgca
     1501 gtgttacccg gcgagcgata tcgtcggcgg atcggcgtgg gtggcccagc tggatgatgg
     1561 cgcgggcgac cttccgcgtt tgcagtaggc cagggacaag ttggggttgg taagtgcgga
     1621 tgactgagct ggcctgctcc agaccgaggt aaatgtcaaa ccagctcggg gtgatgtcac
     1681 tgtactgatg ccaccagccg ggcacgttgg cccgccgcac cagggttaga aacgcttctc
     1741 tttctaggtc gtgggtaaca ccgtagaagg tgagtagctg cgacacgtcg cgttctctaa
     1801 agccaactcg cccaagttcc atacggctga tcttggcgtc agaccccccg atcgcgcggc
     1861 cagctgctgc ggcagtgatt ccgcgggctt ctcgaagccg acgcagctgg gtgcctaaca
     1921 cgatgcgcag cgcggtgggc cccgttggtg gtggcgcagc cttggcgccg gggggatcag
     1981 tggatgccgg cgtacccacc aatctcttat cgcccaccag ggccgacgtg caatttgcac
     2041 aacatgatgc acaccgtagc ggtgcctgct tgcgcgggtc aatgcacact catccgctac
     2101 cgccgcgacc cgcgtgggtg ctgacggcag gaaagcgggc catgctcgtc cccagcatgc
     2161 tcgctgaggt acagaccggt gaggtgacgc aggcgcacct gagggagccc gctatcaagg
     2221 atcggccgac gaaaccgccg ttgtcgggcc ggttaggcag cgctagtcct ggtgattcgt
     2281 gcgcccggca ggttggaggt ggccgatgta ggtcggccgt ggtcgtaagc tcgtcgtcgc
     2341 ttgtcggtgg gagtccggac cgggtagctg ctaggtggcc cggtagcag
//
LOCUS       DASVXZ010000628         2837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_70133, whole genome shotgun sequence.
ACCESSION   DASVXZ010000628 DASVXZ010000000
VERSION     DASVXZ010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70133"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..1795)
                     /locus_tag="VF788_13145"
     CDS             complement(83..1795)
                     /locus_tag="VF788_13145"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEX8935107.1"
                     /translation="MVGWSVPGVVHLRQVREDPVGRRVLARQSVTRKPLSITYLSPEF
                     LADTEFRTRFRDEFARLAQVRDARVARAHRYIEDDHGAAVISEYVSGTSLRTLLLAQG
                     AVSAAAALIVLKDALLALIACHKAGLAHGDIKPEDVILTHAGRVRLVDFGLWTSEGRR
                     LLARSTPFYLAPEQWSGPLVGSAGDIYAATVTFFECLLGAPPFYAGGVAELSAKHQGS
                     VAPVEVVPELVRDLVERGLTKDPCNRPEARDLLALVEDVAAQALRPGWERRGRRELVA
                     LLASRSALPDVPVPSRQDRAGWGYGKPVRLAAVMGGALALAAGLASPPLAVLPGISIF
                     GSGGRPPVLAFPEPDHGTVAVRAVTNGPLADRAATGTAGRPLVQSLPAPNIQTAPYEH
                     AGPGAPESGAGYPDGASTDRRVPGHVTSATPACTQSLADDHKPCTAVKPGSPGSAEST
                     TDPSEVSIPVSLPVQLPVPVPVPAAVEIPVELPVQVPARLPAPVQPPAQVPQSIPRPE
                     QPAPGRDNHFSRDFQAQPDWQGSRKMTRAERSGTTGDSARQPESHHQRGFGNSSGPRN
                     SGNR"
     gene            complement(2027..>2837)
                     /gene="secF"
                     /locus_tag="VF788_13150"
     CDS             complement(2027..>2837)
                     /gene="secF"
                     /locus_tag="VF788_13150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020501883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEX8935108.1"
                     /translation="GQPSEQAISDSAVSATWGGEISRQALIALVVFLGLVSAFLAVYF
                     EPRMALAALIALVHDVLVTAGVYSLIGFEVTPASVIGLLTILGFSLYDTVVVFDKVQE
                     NTRGLLGLTRRTYAEAANLAVNQTLMRSINTSLIAVLPVLGLLVVGVGLLGVGTLKDL
                     ALVQMVGIMIGAMSSILLATPLVVDLTMRRPAYRQQAERVAQRREKLSRKAAASTEAD
                     TPLQQARAGDGATASGLPAKGGKGAPAGRRRGHPAGKTSRPSGKAGRISGR"
BASE COUNT          537 a          943 c          891 g          466 t
ORIGIN      
        1 cacgccgggc tgtggaaagt ccggcacctc acgaatcagc ggcaacagcg cggcggcgag
       61 gtcatccaca ttcgatctgg acctaccggt ttcctgagtt ccgtgggccg ctggagtttc
      121 caaaacctct ctggtggtga ctctccggct gccgagccga atcacccgtg gttccggacc
      181 gctcagcacg agtcatcttt ctcgatcctt gccaatctgg ctgagcttgg aaatccctcg
      241 aaaaatgatt gtcccttcca ggcgcgggtt gctcgggcct aggaatcgac tgagggactt
      301 gcgccggcgg ttggaccggc gcgggcaacc gggccggaac ctgaaccggc aattcaaccg
      361 gaatctccac cgcggcgggc accggaaccg gcactggcag ctggaccggc aacgatactg
      421 ggatcgacac ctcagacgga tccgtcgttg attcggctga acccggcgat cccggtttca
      481 ctgctgtaca cggtttgtga tcgtcagcga gggactgggt gcacgctggc gttgcggaag
      541 tcacatggcc cggtacgcgc cggtcggttg acgcgccatc cgggtagcca gcgcctgact
      601 cgggcgcgcc tggtccggca tgctcgtagg gagcggtctg gatgttcggt gcaggtagcg
      661 actggacgag tggcctccct gcagtcccgg tagcagcgcg atccgccagg ggaccgttgg
      721 tcacagcacg caccgcaaca gtgccgtggt cgggctccgg gaatgccagc accggcggtc
      781 tcccacccga accgaagatg ctgatacccg ggaggacggc taagggtggg ctggccaagc
      841 ccgcggccaa cgccaatgct ccacccatga cggcggccag ccgaaccggc ttgccgtacc
      901 cccagccggc acggtcctgc cggctcggta caggcacatc gggtaacgct gagcggctag
      961 ccagaagcgc cacaagctcc ctgcggcccc gtcgttccca gcctgggcgg agtgcttggg
     1021 cagctacgtc ctcgacaagg gcgagcaagt ctcgcgcttc cggtcggttg catgggtctt
     1081 tggtgagacc tcgctccacc aaatcccgta ccagttccgg caccacctca accggagcaa
     1141 cgctgccttg gtgcttggcc gagagctcag ccacgccacc ggcataaaac ggcggcgcgc
     1201 ctaacaggca ctcgaagaag gtgaccgtgg ccgcatagat atcccccgcg gagcccacca
     1261 gaggtccgct ccactgctcg ggtgccaggt agaagggcgt ggatcgggcc agcagtcgcc
     1321 gaccctccga tgtccagagc ccgaaatcga ccaaccgaac ccggccagca tgggtgagga
     1381 tcacgtcctc gggcttgatg tcaccatgcg ccaggccagc cttgtgacaa gcgatcagcg
     1441 cgagtagggc atccttgagc acgatcaatg ccgccgcggc actgacggca ccctgggcca
     1501 gcaacagggt acgcaacgaa gtcccactga cgtactcgct gatcaccgca gcaccgtggt
     1561 cgtcttcaat gtaacggtgg gcgcgggcga ctcgggcgtc ccgaacctgc gctagccgcg
     1621 cgaactcatc ccggaaacga gtgcggaatt cggtatcggc aaggaattcg ggcgagagat
     1681 aggtaatgct gagaggctta cgggtgacgc tctgacgagc gagaacccgt cggcccaccg
     1741 ggtcctcacg cacctgccgg agatgcacca cacccggaac ggaccacccc accatcccag
     1801 atcctctctg gtagccctca cggtgctgcc ccctgctgtc actcgccgga gcgacatcca
     1861 gcacctgact actgagcgtt ctaccaaatg ggcgtcgaag caaggtgtca gcgggacaac
     1921 gcaccacata ggtgatgcag ggtgagaaaa tccgtagcag ctcgctggcg agccgttact
     1981 ctcagcgatc gtggcaacgc agcgtaatca tccgctttga ttcgcgttaa cgacctgaga
     2041 tccggccagc cttgcctgat ggtctgctgg tcttgcccgc cgggtgtccg cgccgccgtc
     2101 ctgcgggcgc gcccttgcca cctttggcag gtagcccgga ggcggtcgcc ccgtccccag
     2161 cgcgggcctg ttggagtggt gtatcggcct ccgtacttgc ggcggcctta cgggacaact
     2221 tctcccggcg ctgggcgact cgttcggctt gctgccggta ggccggtcga cgcatggtga
     2281 ggtcgaccac caagggggtc gcgagcagga tcgacgacat ggcgccgatc atgatgccca
     2341 ccatctgcac cagggcgagg tccttgagcg ttccgacgcc tagcagacct accccgacca
     2401 cgagcaggcc gagcacaggg agcaccgcga tcaatgaggt gttgatcgaa cgcatcagag
     2461 tctggttgac cgcgagattg gcggcctcag cataggttcg ccgggtcagc ccgagcagtc
     2521 cacgggtgtt ctcctggacc ttgtcgaaga cgacaacggt gtcatacagc gagaaaccga
     2581 ggatggtgag caagccgatg accgacgctg gcgtcacctc aaagccgatc agcgaataga
     2641 cgcccgctgt caccagcacg tcgtgcacca acgcgatcag cgcggccagc gccatccggg
     2701 gctcgaaata aactgccagg aacgcgctca ccaggccgag gaacaccacc aacgcgatca
     2761 acgcctgccg gctgatctcg ccaccccagg tcgcgctcac cgcactatcg ctgatcgcct
     2821 gttcactggg ctgcccg
//
LOCUS       DASVXZ010000629         1523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_931855, whole genome shotgun sequence.
ACCESSION   DASVXZ010000629 DASVXZ010000000
VERSION     DASVXZ010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931855"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(325..786)
                     /locus_tag="VF788_13155"
     CDS             complement(325..786)
                     /locus_tag="VF788_13155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8935109.1"
                     /translation="MAFCGVELGGIIGIWLAAHAPERLSSLVLGSPSAHYGDHGGPWL
                     DRAWSLRLSGTGGLAADVVAGWFSPECAAAHPEAVEKAIQMVTKTTEDDFAECCIAVA
                     AWDARKLLRRIFTPTLVLTPAPEAGKPVNPRPRPWPRPFPGRSSKFSRARS"
     gene            complement(836..1081)
                     /locus_tag="VF788_13160"
     CDS             complement(836..1081)
                     /locus_tag="VF788_13160"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8935110.1"
                     /translation="MRSIEVHYELAGPVDAPVLVLSGPLGSTLEIWQPLAERLAERFR
                     VLRYDHRGHGQSPWRGFYIPDDGPFEVRPSGIVPTRL"
     gene            complement(1138..>1523)
                     /locus_tag="VF788_13165"
     CDS             complement(1138..>1523)
                     /locus_tag="VF788_13165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8935111.1"
                     /translation="ECVRAEWIDGADGPAVGARFRGHQVGQGREWTSVSVVIEAQPGV
                     SFAWAVGDPRCASATWRYQLASDGSGGTILRYCAVLGPGPSGLSDAIAKAPEREDSII
                     AFRLNEHERNMTATLEAIKQAAEKE"
BASE COUNT          286 a          509 c          465 g          263 t
ORIGIN      
        1 atcgggcatt cgggaaacgg ggcaggagca gggtcgagcg ggtgaagccg tccgtgccct
       61 ctgcgtgccc tacgtgaggg acacctacgg tctctcgcgg ctattcacgg tcaaccgaaa
      121 ccgctgctca accgctgtgt cttgcgcatg tcatgtagtt tctaagctct agacgcgggt
      181 tcgattcccg tcacccgctc catcggaaaa gcgcagttca gagtcattct cttcgaatag
      241 cccacgacat cagcgtgatt tttggtgtgc agggtggtgt gcagggagat cagcgatttg
      301 gcccagtctg cttgctcgac aaccctagct ccgcgccctt gagaacttcg agctgcgccc
      361 gggaaatggc cgcggccagg gccttggcct gggattcacc ggcttcccag cctccggggc
      421 aggcgtgagc accagagtgg gggtgaagat ccggcggagc agcttgcgtg cgtcccaggc
      481 agcgacggca atacagcatt cggcgaaatc gtcttccgtg gtcttagtga ccatctggat
      541 cgccttctcc acagcctccg ggtgcgccgc cgcacactcc gggctgaacc agccggctac
      601 cacgtcggca gccaagccac cggtgcccga aagccggagt gaccacgccc gatccagcca
      661 ggggccaccg tggtcgccgt aatgggcgct ggggctgccc agtaccaggg acgacaaccg
      721 ctccggggcg tgcgccgcga gccagatgcc gataattcca cccagttcga cgccgcagaa
      781 agccacctgc ttgatgctga gcggtccagc agcgccagca catcaaaggc catgttcaca
      841 atcgcgtagg aactataccg gatgggcgga cctcaaaggg cccgtcatcc ggaatgtaga
      901 agccacgcca gggagactgg ccgtgtccac gatggtcata gcgcagcacc cggaaccgct
      961 cggccagtcg ctcggcaagt ggctgccaga tctccagggt gctgcccagc ggtccggaca
     1021 gcaccagcac cggggcgtcg acgggcccgg cgagctcgta atggacctcg atgcttctca
     1081 tgcgcgaaac tctagtgcca gccgggcaca cactggatac tgagagttga attggcacta
     1141 ttctttctcg gctgcctgtt taatggcttc cagcgttgct gtcatgttcc gttcgtgctc
     1201 gttgagacgg aaggcgatga tgctgtcctc acgctcaggt gccttcgcga tcgcgtcgct
     1261 caaccccgac gggccggggc ccaagacggc gcagtaacgc aggatggtgc cccccgatcc
     1321 gtcggaagcc agctgatagc gccaggtggc ggaggcgcac cgcgggtctc ccaccgccca
     1381 cgcaaagctg acgccaggct gggcctcgat caccaccgac acgctggtcc actcccggcc
     1441 ctgcccaacc tggtgaccac gaaatcgcgc ccccaccgca ggtccgtcgg caccatcaat
     1501 ccactcggca cgcacacact cac
//
LOCUS       DASVXZ010000630         2149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_931857, whole genome shotgun sequence.
ACCESSION   DASVXZ010000630 DASVXZ010000000
VERSION     DASVXZ010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931857"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..1947)
                     /locus_tag="VF788_13170"
     CDS             complement(154..1947)
                     /locus_tag="VF788_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEX8935112.1"
                     /translation="MTATQQAKSTRKPAQIVEMAWDPITRIIGNLGIYTKIDFANRLV
                     TDCHSTSSLFRGYSVFMKGKDPRDAGFITSRICGICGDNHTTCSVYAQNMAYGIQNPP
                     LAEWIINLGEAAEYLFDHTIFQDNLVFVDYCESMVKDTNPSVLAKAENTLAPNAGIHG
                     MRTIADIMRAFNPFEGDVYKEALKVSRITREMFCLMEGRHVHPSTVYPGGVGTMPEPS
                     LFTDYLTRLLHILDFVKKAVALNDDVFNFWYEALPGYEEVGRRRVLLGCWGAFQDPNV
                     VDYRYEHMTEWGRAMFVTPGIVVDGKLLTTDLVDINLGIRILLGSSYYQDWVNEEPFV
                     THDPLGNPVDMRHPWNQTTLPEPQKRDFGGNYSWVMSPRWFDKSSGEHLALDTGGGPF
                     ARLYSTALAGLVDTPYVRSTGRSVQISLPRSGELPEMTVEWKIPPWSNAIERNRARVY
                     FVAYAAAMAIYFLEQAMQKVRAGDTKVFEDFEVPDEAIGCGFHEAVRGVLSHHMVVKD
                     GKIANYHPYPPTPWNGSPRDSYSTLGPYEDAVADMPIFEENGPENFRGVDIMRAVRSF
                     DPCLPCGVHMYLGNGRTLNRLHSPTFGASHG"
     gene            complement(1949..>2149)
                     /locus_tag="VF788_13175"
     CDS             complement(1949..>2149)
                     /locus_tag="VF788_13175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935113.1"
                     /translation="GSLSSMIVKPYGAFIRRMRGITNASANREPKWRHNREALTSGFD
                     PRWRPASRANGQPSGTRAMRRA"
BASE COUNT          368 a          691 c          680 g          410 t
ORIGIN      
        1 ccgtacacat ccgccagcgc cgagaccgcc tcgagcgcga tctccccggt cggaccggga
       61 agggcttcta cctgccccag aagctcatcg agtctgctga gctgctcgtg cacggcggca
      121 tcatccagcc gggagcggcc ctcgccggcg gactcagcca tgacttgccc cgaaagtcgg
      181 cgagtgcagc ctgttgagcg tgcgcccgtt gccgaggtac atgtgcaccc cacagggcag
      241 gcacggatcg aagctgcgca cggcccgcat gatgtcgacg ccccggaagt tctccgggcc
      301 gttctcctcg aagatcggca tgtccgccac cgcgtcctcg tagggtccga gcgtgctgta
      361 ggaatcgcgg gggctgccat tccacggcgt cggaggatat gggtgatagt tcgcgatctt
      421 tccatccttg acgaccatgt ggtgggacag cactccccgc accgcctcat ggaacccgca
      481 gccgatcgcc tcgtcaggca cctcgaagtc ctcgaaaacc ttggtgtcac ccgctcgcac
      541 cttctgcatg gcctgctcga gaaagtagat cgccatcgcc gcggcgtagg ccacgaagta
      601 cacccgggct cggttgcgct cgatcgcgtt cgaccagggc gggatcttcc actccacggt
      661 catctcgggc agctcaccgc tgcgcggcag cgagatctgc acgctgcgcc cggtggacct
      721 cacatagggc gtgtcgacca ggccggccag cgcagtggag tagagccggg cgaagggacc
      781 gccgccggta tccagcgcga ggtgctcacc actgctctta tcgaaccatc gcgggctcat
      841 cacccagctg taattgccgc cgaagtcccg tttctgcggc tcgggcaggg tcgtctggtt
      901 ccacggatgc cgcatgtcga ccgggttgcc cagcggatcg tgggtgacga agggttcctc
      961 gttgacccag tcctggtaat aggagctgcc gagcaggatc cggatcccga ggttgatgtc
     1021 caccaagtcg gtggtgagca gtttcccgtc gacgacgatc ccgggcgtca cgaacatcgc
     1081 ccgaccccac tcggtcatgt gctcgtagcg gtagtccacc acgttcgggt cctggaaggc
     1141 gccccagcag cccagcagca cgcggcggcg accgacctcc tcgtaaccgg gcagcgcctc
     1201 gtaccagaag ttgaaaacgt cgtcattgag cgcgacggcc ttcttcacga agtcgaggat
     1261 gtgcagcagc cgggtgaggt aatcagtgaa cagtgacggt tcgggcatcg tgccgacacc
     1321 accggggtaa acggtggacg ggtgcacatg tcggccttcc atcaggcaga acatctcccg
     1381 ggtgatccgg ctgaccttca aggcctcctt gtagacgtca ccctcgaacg ggttgaacgc
     1441 gcgcatgatg tcggcgatcg tccgcatgcc gtggatacct gcgttgggcg ccagggtgtt
     1501 ctccgccttg gccagcacgc tcgggttggt gtctttgacc atcgactcgc agtaatccac
     1561 gaacaccaaa ttgtcctgaa agatcgtgtg gtcgaacaaa tattcagcgg cctcacccaa
     1621 gttgatgatc cactcggcca gaggtgggtt ctggatgccg taggccatgt tctgggcata
     1681 gaccgagcag gtggtgtggt tgtccccgca gatcccgcag atccggctgg tgataaaacc
     1741 ggcatcgcgg ggatccttac ccttcatgaa caccgagtag ccgcggaaca gcgacgacgt
     1801 gctgtggcag tcggtcacta gccggttggc gaagtcgatc ttcgtataga tgccgaggtt
     1861 gccgatgatg cgggtgatcg ggtcccacgc catctccacg atctgggccg gcttgcgtgt
     1921 gcttttcgcc tgctgcgtgg ctgtcatgtc atgccctcct catcgctcgt gtgccgctgg
     1981 gttggccatt ggcccggctc gccgggcgcc agcgcgggtc aaagccgctg gttaacgcct
     2041 cccggttgtg ccgccacttg ggttcccggt tcgcgctggc gttggtgatg ccacgcatcc
     2101 gacggatgaa cgccccgtac ggcttgacga tcatggagga gaggctccc
//
LOCUS       DASVXZ010000631         4168 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_429463, whole genome shotgun sequence.
ACCESSION   DASVXZ010000631 DASVXZ010000000
VERSION     DASVXZ010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4168
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429463"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..564
                     /locus_tag="VF788_13180"
     CDS             139..564
                     /locus_tag="VF788_13180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC/PaaZ C-terminal domain-containing protein"
                     /protein_id="HEX8935114.1"
                     /translation="MSRRCCTDVAEGEELPGLQVRVTRADLVRYAGASGDFNPIHWSD
                     RAAREVGLPDIVAHGMLTMALANRLVTSWAGDPGAVVECAARFTRPVVVPEDADGTLI
                     EFAGKVKKRRDDGTVVIMITARAAGQTVLGQATATVALR"
     gene            818..3442
                     /gene="lanKC"
                     /locus_tag="VF788_13185"
     CDS             818..3442
                     /gene="lanKC"
                     /locus_tag="VF788_13185"
                     /inference="COORDINATES: protein motif:HMM:NF038151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III lanthionine synthetase LanKC"
                     /protein_id="HEX8935115.1"
                     /translation="MSIDPGGVVDKRYEVYCLVNQHFYDATSRLVEQSRDFELSRAPA
                     PEGWAVSDRDNWHVLHPADGEFPAQGWKVHVSACLDNAQRVLAAVADYCRNRRIAFKF
                     LRSLDVLLLANAKYANRGSSGKFITVYPSDEAQLEGVLTELGELLEGNPGPYILSDLR
                     WAGGPLYVRYGGFAERYCLSENGSLEPAIEDPEGRLVPDRRVPTFRLPEWVRLPAFLE
                     PHLAARNSVRVDALPYRIERALHFSNGGGLYAGQHISTGAQVVLKEARPHAGLDMDGT
                     DAVARLRREGEMLERLAGLDVVPAVHGSFTLGEHHFLALEFIDATPLRTAIAERYPLV
                     KPDADERTIAEYTSWALDIQAKLERAVGAFHGRGLVIGDLHPFNVLLRPDGRVALVDF
                     EVAAGVEEGRRQTLANPGFAAPQDRTGFDIDRYALACLRLFLFLPLTTLLAIDRAKAV
                     DFANVISDSFPVPAAFLDEAVQVITGQQRSEPSRPPLRLDPDRDGWERIRASLTGSIL
                     ASATPDRDDRLFPGDIEQFQTGGLNIAHGAAGVLYALDVTGAGRCPEHEEWLLQRALH
                     PVSRTTRLGFYNGLHGVAYVLDHLGYRAEALKVLDICITELGGQGDRLGLDLHGGLAG
                     VGLNLTHFAAITADPSVRTAALTVAQAVADRLGALDSVGEVSGGSHPYAGLMHGRAGP
                     ALLFIRLYELLGQPTLLDLARTALQQDLRRCVVRDDGCLHVKEDGRTMPYLAVGSVGI
                     GLVLDHYLAHRNDDQLTEAAGRIRRAASSPFYVEPGLFHGRAGMILYLSHGCGPQDRI
                     VGDHIRRLTWHAVDYQGCAAFPGAEQLRLSMDLATGTAGVLLAVGAALHPAPVHLPFL
                     AAAQSIPVSTGSVASPVW"
     gene            3458..3589
                     /locus_tag="VF788_13190"
     CDS             3458..3589
                     /locus_tag="VF788_13190"
                     /inference="COORDINATES: protein motif:HMM:NF033212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SapB/AmfS family lanthipeptide"
                     /protein_id="HEX8935116.1"
                     /translation="MALLDLQEMEIPEAPNGALTASWGDSNSDWGGYGSGLSLLLCG"
     gene            3580..>4168
                     /locus_tag="VF788_13195"
     CDS             3580..>4168
                     /locus_tag="VF788_13195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEX8935117.1"
                     /translation="MRIRGTGEDRYPAHPHQRDAPFRPPAGAGPRPASDRLILRTIQH
                     GGGWTGLLVVASLTLAGVETVFPAVLGGAVDAVLGGHDALPWFVGCGLLVAVLIGSGA
                     LDELASGMSTAGATAWLRRSALDHVLALGTRSARRFPVGDITTRMVGNAADAGRASTV
                     LVRTVVGGVPALGGIVALALIDPLLCLTSLVGAPVL"
BASE COUNT          643 a         1367 c         1410 g          748 t
ORIGIN      
        1 atacgtcgat ggcatccgag ccatgggggg taacgacatg ctcaccgtgc gctgtgagat
       61 caccgaccaa gccggggatc cggtgacgac ggcccggacc gtgctggtta tccccggctc
      121 ggacccagag gggcacgggt gagtcggcgt tgctgcaccg acgtcgccga gggcgaggag
      181 ctgcccgggc tgcaggtccg agtcacccgg gctgatctgg tcaggtatgc cggagcctcc
      241 ggtgatttca acccgatcca ctggagtgat agggccgccc gcgaggtcgg actgcccgac
      301 atcgtcgcgc atggaatgct caccatggcg ttggccaacc gcctggtgac ctcctgggcc
      361 ggcgatccgg gtgccgttgt ggaatgtgca gcccgcttca cccgcccggt ggtggtgccc
      421 gaggacgccg atgggacgct gatcgaattc gctggcaagg taaagaagcg acgcgatgac
      481 ggcaccgttg tcatcatgat caccgcacgg gcagctggtc agaccgtgct cggccaagcc
      541 acggccaccg ttgccttacg ctgaccagtc gtctaccaat tgtggattgt ccattgcttg
      601 ggcgatttgt cgagataatc ggccacacgt tgatgatcgg cttctctgtt atcggatgcg
      661 ctctggcccg cgtactgaag tggtgtcgcc gcaggaacta ccactctacg taagaattgg
      721 ctagcccata cggagtcttt cgctcttgcg taggtacctc taatctttgc cacagaatcg
      781 cacgaatagg ctaagtggta gcgagaaaaa cactgtaatg tctatcgacc ctgggggtgt
      841 cgtggacaag cgctacgagg tgtactgcct ggttaaccag cacttctatg acgcgacatc
      901 cagattggtc gagcagtccc gagacttcga gctcagccgc gctccggcac ccgagggctg
      961 ggcggtcagt gaccgtgaca actggcatgt ccttcatccg gcggacgggg agtttccggc
     1021 gcaggggtgg aaggtacatg tctcggcatg tctcgacaac gcccagcgag tcttggccgc
     1081 ggtcgcggac tactgccgga accggcggat tgcgttcaag ttcctgcgca gcctcgacgt
     1141 tctgctgctc gcgaatgcca agtacgctaa ccgtgggtcc agcggcaagt tcatcacggt
     1201 atatccgtcg gacgaagcgc agctggaagg ggtgctcacc gagctcggtg agctgctgga
     1261 gggtaacccc ggtccttaca tactcagcga cttgcggtgg gccggcggac ccctgtacgt
     1321 gcgctatgga ggtttcgccg aacggtactg tttgtcggaa aacgggtcgt tggaacccgc
     1381 gattgaagat ccggaagggc gattggtgcc ggaccgtcgg gtcccgactt tccggcttcc
     1441 cgaatgggtg cgcctgccgg cgttcctcga gccgcatctg gcagcgcgaa acagtgtgag
     1501 agtggacgcc ctgccctacc ggatcgagcg cgcgctgcac ttctccaacg ggggcggcct
     1561 ttacgcgggc cagcatattt cgaccggtgc gcaggtcgta ctcaaagaag cccggccgca
     1621 cgcagggctg gacatggacg gtacggacgc ggtggccaga ctgcgtcgcg agggggagat
     1681 gctggagcgg cttgccgggc tcgatgtcgt gccggcggtg cacggttcat tcacgctcgg
     1741 ggagcaccac tttctggcac tggaattcat cgacgccacg ccgctacgga cggccatcgc
     1801 tgagagatat ccgctggtga agccggacgc cgacgagcgg actatcgccg agtacacatc
     1861 gtgggccctc gatatccaag ccaagctcga acgggcagtc ggcgcttttc acggccgtgg
     1921 tctggtcatc ggagatctgc acccgttcaa cgtcctgctc cggcccgatg gccgcgttgc
     1981 gctcgtcgat ttcgaggtcg cggccggtgt cgaggaaggc cggcggcaga ccctagccaa
     2041 tccgggcttc gccgcgccac aggaccgcac cggtttcgac atcgaccgtt acgcgctggc
     2101 ctgcctgcgc ctgttcttgt tccttccgct gaccaccttg ctcgcgatcg accgagccaa
     2161 ggcggtcgac ttcgccaacg tgatctctga ctcattcccg gttccggcgg cattcctcga
     2221 cgaggcggtg caggtcatca caggccagca gcgctctgag ccgtcccggc cgccgctccg
     2281 gctggacccg gatcgagacg gctgggaacg gatccgggcg tcactgaccg ggtccatcct
     2341 cgccagtgcc accccagacc gcgacgaccg gctgtttccc ggtgacatcg agcagttcca
     2401 gaccggcggg ctgaacatcg cgcacggggc ggccggggtg ctctacgcgc tggacgtgac
     2461 cggcgcgggc cgctgtccag agcacgaaga gtggctcctg cagcgagcgc tgcacccggt
     2521 ttccaggacg acgcggctag gcttctacaa cggtctgcac ggcgtcgcgt acgtgctcga
     2581 ccatctcggt taccgggccg aggcactgaa ggtcctcgac atctgcatca ccgagctggg
     2641 tgggcagggg gatcggctcg gcctggacct gcacggcggg ctggccgggg tcggactgaa
     2701 cctgacgcac tttgccgcca tcaccgcaga cccctcggtg cgtaccgcgg cgctcaccgt
     2761 ggcgcaggcg gtcgcggacc ggctgggagc cctggactcc gtgggcgagg tgagcggcgg
     2821 ttcccacccc tacgccgggc tcatgcacgg ccgcgcgggt ccggccttgc tattcatccg
     2881 tctctacgaa ctcctcggcc agccgaccct gctcgacctg gcgcggaccg cgttgcaaca
     2941 ggacctccga cgctgcgtgg tccgcgacga cggatgtttg cacgtcaagg aggacgggcg
     3001 aaccatgccc tacctggctg tcggcagcgt cggcatcggg ctcgtcctcg accactacct
     3061 cgcccaccgc aacgacgacc agttgactga ggcggcaggt cgcattcgcc gtgccgcgtc
     3121 gtccccgttc tacgtcgagc ccgggctctt ccacggccgg gcgggcatga tcctgtacct
     3181 cagtcacggg tgcggtcccc aggaccgcat tgtcggcgac cacatccggc ggttgacctg
     3241 gcacgccgtt gactaccaag gttgcgcggc gttccccggc gcggagcagc tccggctgtc
     3301 catggacctg gccactggca ccgccggggt gctgctggct gtcggcgccg cgctgcaccc
     3361 agcgccggtg cacctgccgt tcctcgcagc cgcccagtcc atcccggtca gcaccgggtc
     3421 cgtggcatca cccgtctggt gaaggaggtg agatcacatg gcactgctcg acctgcagga
     3481 gatggagata cccgaagcac cgaacggcgc gctcacggcc agctggggcg acagcaacag
     3541 cgactggggc ggctacggga gcggcctcag cctgctgctg tgcggataag aggtaccggt
     3601 gaggatcgtt acccggcgca tccccaccag cgtgacgccc cgttccggcc acccgccggg
     3661 gcggggcctc ggcccgcctc cgaccggttg atcctgcgga ccatccagca tggcgggggc
     3721 tggacgggtc tgctggtggt tgcctcgctc acccttgccg gtgtcgagac ggtgttccct
     3781 gccgtgctcg ggggtgccgt cgacgccgtg ctcggtggtc atgacgccct gccgtggttc
     3841 gtgggttgcg ggctgctggt cgcggtgctc atcggcagcg gtgcgctcga tgagctcgcc
     3901 agcggcatga gtaccgcggg ggccacggcg tggttacgga gatccgctct cgaccacgtc
     3961 ctcgcgctgg gtacgcgctc agcgcgccgg ttcccggtgg gcgacatcac cactcgcatg
     4021 gtcggcaacg ccgcggacgc cgggcgggcg agcaccgtgc tggttcggac ggtcgtgggc
     4081 ggcgtgcctg cgctcggcgg gattgtcgcg ctcgcgctca tcgacccgct gctgtgcctg
     4141 acgtccctcg tcggggctcc ggtgttgc
//
LOCUS       DASVXZ010000632         6008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1020997, whole genome shotgun sequence.
ACCESSION   DASVXZ010000632 DASVXZ010000000
VERSION     DASVXZ010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6008
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1020997"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VF788_13200"
     CDS             <1..388
                     /locus_tag="VF788_13200"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HEX8935118.1"
                     /translation="WFRTCDIGRFDSQGRLKVLGRADDVIVTGGLNVAPAEVEAILTG
                     LPGVAAACVVGLPDPEWGERVTAVVTPADPRRPPDPGALRVAAQRLLTGAQVPKEIIL
                     FDALPLHGVGKPDRKAIQNMLAARSH"
     gene            605..1900
                     /locus_tag="VF788_13205"
     CDS             605..1900
                     /locus_tag="VF788_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935119.1"
                     /translation="MAPSTRRYRRVRLTARIAALTVVALLTGLAEADLPALAQGTAPA
                     PASDKVTTWFAGLLPDGDDTNVRYDAGGLRIDSSPAGTASIKSGHPEGMLLTSVQPLS
                     TFSSQIAAEIVAEQPAGSVVAVDVRGTRGDGSWTEWVTTGPQAPAILGAAVTAVQSRV
                     MLRGGQHGASPVVRSVRLTAKSGVQLLAARPRNAPSYQVFATREGLVGATTANGHVIH
                     ERDHFVALPSRRGLAPRESGDYTVKVCAANGRCEWAPVWDVGPWNTTDDYWNPADSRQ
                     TWPDLPQGRPQAQAAYEDKYHDGQDQFGRQVHNPAGIDLADGTFWDGLGLRDNSWVTV
                     TYLWVDGGSPAIVRLPILPVRSGPGEKYPVVGLAAQRARLMVECAVTGQLVTGSQGST
                     DRWLRIGPKQFIPAAHVGLGAVPGAAKVQQVSAQRCTNP"
     gene            1910..2794
                     /locus_tag="VF788_13210"
     CDS             1910..2794
                     /locus_tag="VF788_13210"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005443055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0046428 - 1,4-dihydroxy-2-naphthoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEX8935120.1"
                     /translation="MASAAQWIDGARPRTLPNSIAPVLAGWGAAATLAPPHWSPSHWA
                     RALLALVVALALQIGVNYANDYSDGIRGTDDVRVGPMRLVGSGAAAPAAVRTAAVASF
                     AIAGVAGLVLVALAGQWWLLALGGACVVAAWCYTGGPHPYGYSALGELAVFVFFGLVA
                     VLGTQYVVGGRITLAGGLAAVSVGAMSAAVLVANNLRDIPTDSIAAKRTLAVRLGDQR
                     TRMLYTVLVSTPFVVTLGLATYRWAALAGLLALVFTVPALRQVRGGASGPALIPVLRD
                     TGLALLVWAATTALALAS"
     gene            complement(2817..3098)
                     /locus_tag="VF788_13215"
     CDS             complement(2817..3098)
                     /locus_tag="VF788_13215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4229 domain-containing protein"
                     /protein_id="HEX8935121.1"
                     /translation="MVAPQTPPTGSTLARDVALYTVARLAMVAAMALILVLAGVPLLV
                     SILLALVVALPLSIVLLGSLRARVNAGLAVVGERRRAERDRLRRQLRGD"
     gene            3267..3815
                     /locus_tag="VF788_13220"
     CDS             3267..3815
                     /locus_tag="VF788_13220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935122.1"
                     /translation="MNTVSWIVIGIVVLAVILLLAVMLRRRSRINLQERFGPEYDREV
                     EARGSERDAERHLRDVANRRDKLDIRQLDATARDRYTQRWEAVQSDFVDQPGRALDEA
                     DRLVTDVMKDRGYPVQNFNERAELVAADHPQVVEHYRAAHAARQRHTPSHDGAGEGAD
                     TEELRQAFVHYRALFDELVHDR"
     gene            3846..4508
                     /locus_tag="VF788_13225"
     CDS             3846..4508
                     /locus_tag="VF788_13225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935123.1"
                     /translation="MNIGQQQGEPERGEGLGGRVRRFIDSELNRARDKRDRETDEGHS
                     EHRHAHDPTADSTRHQEAVNRNIEEPKNADEFNNIGEPTYTGESGNVVHPAATAPVES
                     GYDATGHDPREQSTGVESAAPAPDHSRTSTEAAADGSATRVGLLNDPAGLREQWQQVQ
                     GTFVDDPQRAVHEASVLVERTLQEIHDNVSRGQISDPTSTEDLRVSFQRYREFFQRLL
                     SA"
     gene            4575..4745
                     /locus_tag="VF788_13230"
     CDS             4575..4745
                     /locus_tag="VF788_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8935124.1"
                     /translation="MGLADKAKNKAEEVKGQGKEAAGQATDDDQLKAEGKSDQAKGDI
                     KQAGEKVKDVFK"
     gene            5121..5360
                     /locus_tag="VF788_13235"
     CDS             5121..5360
                     /locus_tag="VF788_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BldC family transcriptional regulator"
                     /protein_id="HEX8935125.1"
                     /translation="MSHPQSTERLLTPGEVAALFRVDPKTVTRWASAGRIGSIRTPGG
                     HRRFRETEVRALLASLTTPAPLDRSSDRTARKTAG"
     gene            5426..5602
                     /locus_tag="VF788_13240"
     CDS             5426..5602
                     /locus_tag="VF788_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935126.1"
                     /translation="MAAVQFVMAAMGVAGITALLWKALRPQQPAARSVLAPDDDPEFL
                     KGLNRQRQRPEDER"
     gene            complement(5616..>6008)
                     /gene="ccsA"
                     /locus_tag="VF788_13245"
     CDS             complement(5616..>6008)
                     /gene="ccsA"
                     /locus_tag="VF788_13245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEX8935127.1"
                     /translation="ILLVSGVASVLYLISLREPSRFAAWLPDSALLDRLAYRTAVVAL
                     PIWTFALITGAIWAEAAWGRYWGWDPKETCALIAWVVYAGYLHARATAGWRGSRAAWV
                     NVVGFGVMLFNLFFVNIVIAGFHSYAGI"
BASE COUNT         1102 a         1966 c         2024 g          916 t
ORIGIN      
        1 ctggttccgg acttgtgaca tcggacggtt cgactcccaa ggtcggctga aggtgctcgg
       61 gcgagctgac gatgtgatcg tcaccggggg actcaacgtg gccccggccg aggtggaggc
      121 catcctcacc ggcctacccg gagttgccgc ggcctgcgta gtaggcctgc ccgacccgga
      181 gtggggtgag cgggtgaccg ccgttgtgac acctgccgat ccccgccggc cccctgaccc
      241 gggtgcgctg cgggtggcag cacagcgcct gctgaccgga gcacaggtgc ccaaggagat
      301 catcctgttc gacgcgctac cgctgcacgg cgtcggcaag cccgatcgca aggcgatcca
      361 gaacatgctc gccgcccgca gccactgacc tcgtcgacgc gccttgcccg gccggggctg
      421 ctctaggcag cggcggaggt gttcctggcg gtgtgcccag gccgcgggca taagcagaaa
      481 gtgcacgttc acccacactg ggtatggacg gcggcgagtg tcgagggttc tctggacacc
      541 aaacgtctca ataatcacat gagtcacacc gggaacagct gtcccccata gtcaggagca
      601 tttcgtggcg ccgtcgaccc gtcgctatcg ccgtgtccgc ctcacggcac ggatcgccgc
      661 cctgactgtc gtcgccctgc tcaccgggct tgcggaagcg gacctacctg cccttgcgca
      721 gggcaccgcg ccggcaccgg catcagacaa ggtcaccacc tggttcgccg gcctcctccc
      781 ggacggggac gacaccaatg tgcgatacga cgccggcggc ctgcgcatcg actccagtcc
      841 tgccggaacg gcgagcatca agtctggcca cccagagggc atgctgctca cctccgtgca
      901 gccgttgagc acgttcagca gccagatagc ggcggagatc gtcgctgagc agccagccgg
      961 ctcggtcgtc gccgtggacg tccgtggcac gcgcggcgac ggatcatgga ccgagtgggt
     1021 gacgaccggc ccgcaggcgc ccgcaatcct gggcgccgca gtgacagcag tgcagtcccg
     1081 ggtcatgctg cgcggcggcc agcacggtgc aagcccagta gtgagatcag tacggctcac
     1141 cgccaaatcc ggcgtgcagc tgctggccgc ccgcccacgc aacgccccca gctaccaggt
     1201 gttcgccact cgcgagggtc tggtcggcgc caccacggcg aatggccacg tgatccacga
     1261 acgggaccac ttcgtcgcgc taccctcgcg gcgagggctg gctccccgcg aatcgggcga
     1321 ctacacggtg aaggtctgcg cggcgaatgg tcggtgcgaa tgggcgccag tgtgggacgt
     1381 cgggccgtgg aataccaccg acgattactg gaatcccgca gactcccgcc agacctggcc
     1441 agacttgccg cagggccggc cgcaggcaca agcggcctac gaggacaaat accacgatgg
     1501 ccaggaccag ttcggcaggc aggtgcataa tccggctggg atcgacctgg cagatggcac
     1561 tttctgggac ggtctggggc tgcgcgacaa cagctgggtc accgtcacct acctctgggt
     1621 ggacggcgga tcacccgcca tcgtgcggct cccgatcctg ccggtacgca gcggtccggg
     1681 tgagaagtac ccggtcgtcg ggcttgccgc ccagcgcgcc aggctgatgg tcgaatgcgc
     1741 cgtcaccggc cagctcgtca ccggcagcca gggcagtacc gaccgctggc tgcggatcgg
     1801 ccctaagcaa ttcatcccgg ccgcgcatgt gggtctcgga gccgtccccg gcgccgcaaa
     1861 ggttcagcag gtatcggctc agcgctgcac aaacccgtag ggttggcgcg tggcaagcgc
     1921 ggcgcagtgg attgatgggg cgcggcctcg cacgttgccc aattcgatcg ccccggtgct
     1981 ggcggggtgg ggagcggcgg ccacgctggc accaccgcac tggtcaccat cgcattgggc
     2041 gcgggcgctg cttgcgctgg tcgtggccct ggcactgcag atcggggtca attacgccaa
     2101 cgactactcc gacggcatcc gcggcaccga cgatgtccgg gtcggcccga tgcggctggt
     2161 cggatccggt gccgcggcac cggccgcagt gcgtacggcc gccgtggcca gcttcgcgat
     2221 cgccggagtg gccggactgg tgctggtggc cctggccggg caatggtggc ttctcgcgct
     2281 gggcggtgcc tgcgttgtcg ctgcctggtg ttacaccggt gggccccatc cttacggcta
     2341 ttccgccctg ggcgagctgg ccgtgttcgt attcttcggg ctggtcgcgg tgctgggcac
     2401 ccaatacgtg gtcggggggc ggatcaccct ggccggtggc ttggcggccg tgtcggtagg
     2461 agcgatgtcg gccgcggtgc tggtggctaa caatctgcgc gacattccca ccgactccat
     2521 cgccgccaaa cgcacccttg ccgtgcgcct cggcgaccag cggacccgca tgttgtacac
     2581 cgtgttggtg agcacaccat tcgtggtgac gctcggcttg gccacctacc ggtgggcggc
     2641 cttggccggt ctactcgcgc tggtattcac ggtccccgcg ctgcgccagg tccgcggcgg
     2701 agccagcggg ccggcgctga tcccggtact tcgggacact gggctcgcgc tgctggtgtg
     2761 ggcagctacc acggccctgg ctctggcctc gtaggccggc ggcaacgctg cgctcactag
     2821 tcgccgcgca gctggcgacg gagccggtca cgctcggccc ggcggcgctc cccgaccacg
     2881 gccagaccgg cgttcacccg ggctcgtaac gagcccagca acacgatcga cagtggcaac
     2941 gccactacca gcgcgagcag gatcgatacc agcagcggaa caccggccag caccaggatg
     3001 agcgccatag cggcaaccat ggccagccga gccacggtgt agagcgccac gtcgcgggcg
     3061 agcgtggagc cggtcggtgg agtctgcggt gccaccacga ccagcgagct taatcccgtc
     3121 gagcggcggt gtttgacgaa cgtccgcctg gtgcccggtt cgcgtcgatt gggccggacg
     3181 ggtaacccgc gtgtaaggcc gttgcccttt gggtacttcc gatctatgcg attgatcagt
     3241 aactgaaggc ggcatggagg cttgtgatga acaccgtcag ctggattgtc ataggaatcg
     3301 tcgtgttggc ggtgatcctg ctgctggcgg tgatgctccg ccggcgcagc cgcatcaacc
     3361 tgcaggaacg cttcggccct gaatacgacc gcgaagtaga ggcccgaggc agcgagcgcg
     3421 acgcggagcg ccacctacgg gacgttgcca atcggcgcga caagcttgac attcgccagc
     3481 ttgacgccac ggcccgcgat cgctacaccc aacgctggga agccgtgcag agtgacttcg
     3541 tcgaccagcc cgggcgcgcg ctggatgagg cagaccggct ggtgaccgac gtgatgaagg
     3601 accgtggcta cccggtgcaa aacttcaacg agcgagccga gctcgtcgcc gctgaccatc
     3661 cacaggtcgt tgagcactac cgcgcggcac atgccgcccg gcagcgccac accccgagcc
     3721 atgacggagc cggggaaggc gccgacaccg aagagctgcg tcaagcattc gtacattacc
     3781 gcgcgctgtt tgatgagctg gtgcacgacc gctaagccgc gagaggctat cgacggaggc
     3841 aggacatgaa tatcggccag caacaaggag agcccgaacg aggagaaggc ctgggcggga
     3901 gagtacgccg cttcatcgac agcgaattga atcgcgctcg ggataaacga gatcgagaaa
     3961 ccgacgaggg tcacagcgag cacagacatg cgcatgatcc caccgcagat tccacccggc
     4021 accaggaagc cgtgaaccgt aacatcgagg aacccaagaa cgccgatgag ttcaataaca
     4081 tcggtgaacc cacatacacc ggcgaatccg gtaacgtcgt ccacccagcc gccaccgcgc
     4141 ccgttgagag tggatacgac gcgaccgggc acgatccccg cgagcagagc accggggtcg
     4201 agagcgcagc gccggcgccg gaccacagcc gcacgagcac tgaagctgcc gccgatggca
     4261 gtgccacccg agtgggcctg ctcaatgatc cagctggcct gcgcgagcag tggcaacagg
     4321 tgcagggcac cttcgtcgac gacccgcagc gggcggtgca cgaggccagc gtcctcgtcg
     4381 agcggaccct gcaagagatc cacgacaacg tcagccgtgg gcagatcagc gacccgacat
     4441 caaccgagga tctgcgggtc agcttccagc gctaccggga gttctttcaa cggctactat
     4501 cggcgtgagg ggtctggaat tggggggcat cccgccagtc ggcgaggtgc cggatactgc
     4561 tgaaggagaa tacgatgggg cttgccgaca aagctaagaa caaggccgaa gaagtcaaag
     4621 gccaaggtaa agaggctgcc ggtcaagcaa ccgatgacga ccagctcaag gctgaaggca
     4681 aatcagatca agccaagggc gacatcaagc aggccggcga aaaagtgaag gatgtcttca
     4741 agtaaggttg cggaggcggc ccccggcccg gtattccggg gtcgggggcc gctgcagctc
     4801 tggcgtcgat tcctgacatc ccgcctgaga gctgttggcc aggctcagcg gtcgccgggt
     4861 cgtgcgctca ggagcctggg accgagggaa ggcagtaggt gccgacgacg gggaagcggc
     4921 cgcccggccc ggagacggac cgatatcgag ccgcgagcgg gacaggggta cggctcacca
     4981 tcgaagtaac cgatttggga tgattcatcc cattaccgac gctttacctc tacagaaccg
     5041 ttcgagtacc tagcgagcga cctgtcacga tactccggta ggtcccgact gtgaggtcga
     5101 cgcgcttggg gaggcccgtc atgtcccatc cacagagcac tgaacgttta ctcacgcccg
     5161 gggaggtggc tgcgctgttc cgagtagatc cgaagacggt cactcggtgg gcctccgctg
     5221 ggcggatcgg ctcgatcagg acccctggcg ggcatcggag attccgagag acagaggttc
     5281 gtgcgctgct ggcctcgctg accactccgg cgccactgga ccgctcttcg gatcgcaccg
     5341 cccgcaagac cgctgggtga tgtccgggtg aggccagctc gcctgcttcg ctgaacgcta
     5401 ctacgctcag tgtgacgtgg aggaggtggc tgccgtgcag ttcgtgatgg cggcgatggg
     5461 agtggctggg atcactgcgc tgctatggaa ggcgttgcgc ccacaacaac cggcagcgcg
     5521 ctctgtgctc gcaccggatg acgatccgga gttcctcaag ggtctgaacc gccagcggca
     5581 gcgccccgaa gatgaacgct gacactcact gatcgtcaga tgccggcgta agagtggaaa
     5641 ccggcgatga cgatgttgac gaagaacaaa ttgaacagca tcaccccgaa gccgaccacg
     5701 ttgacccagg ccgcgcgcga accgcgccac ccagccgtcg ctctagcgtg caggtaccct
     5761 gcatacacca cccaggcgat cagggcacag gtctctttcg gatcccagcc ccaatagcgg
     5821 ccccacgcag cttcggccca gatcgcgccg gtgatgagcg cgaacgtcca gatcggcagg
     5881 gcgactaccg ccgtacggta ggccagcctg tccagaagcg cgctatcggg cagccaggcg
     5941 gcgaaccgag aaggctctcg aaggctgatc aggtacagca cgctggccac accggatacc
     6001 agcaggat
//
LOCUS       DASVXZ010000633         2981 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1110956, whole genome shotgun sequence.
ACCESSION   DASVXZ010000633 DASVXZ010000000
VERSION     DASVXZ010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1110956"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VF788_13250"
     CDS             <1..535
                     /locus_tag="VF788_13250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935128.1"
                     /translation="DVNIDRRALLLKLAAGLSLAAIAPAISTLEADAAQAAPLYTRGD
                     RFTGVWHSRYVYYSSGRESEFVGEHYVVLNQQENQLSGQSLPNSLHSLLTLDLAVNDS
                     TATGAWIERTSPTGYYNGAVYRGAIQLLIDPTGSVMTGRWLGFDKESNINTGDWELIR
                     VAGLSSKSALREFHFKV"
     gene            1308..2516
                     /locus_tag="VF788_13255"
     CDS             1308..2516
                     /locus_tag="VF788_13255"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEX8935129.1"
                     /translation="MGDLLLELVWVPPVAASWPAWWRVLTELAYFLALASVVGGTVTY
                     LAVLRPVLRTTQMGIKDADVIVMWCRSVTLLAYAGLALLLAAYGELAGRVARADTGTS
                     FGEALTPPRIWQFLAQPAKAGSWISTGTLFVAQSVLFLVVAALLVSLLVPRARDRLTS
                     VATLAASFAVTASLMNSVPTNLGDETVDDVLGAIMSQTHIIAGCIWLGGLASLALLAR
                     IRRTLSTQAGLFWARIWQRFSILALTTVGAVITSGAWLTWKHVGGPGELITTTYGRFL
                     LVKLLLVLALVSAGAYNQFLLTPRIARAHAAGEIRKGFALTLHRFPGVVAVETTLGVC
                     VLLIVPFLTGSARAQAGSGAAPTVDGNILALGLVLVASLGASFYAAHRVSLFLTHRAE
                     VAGGSTVSAR"
BASE COUNT          542 a          967 c          884 g          588 t
ORIGIN      
        1 cgacgtcaat attgaccgac gcgcgttgct cctaaagctc gccgctgggc tgtcattagc
       61 ggcaatagca cctgccatat cgacactcga agccgacgct gcacaagccg ctccattgta
      121 cacacgaggc gaccgcttta ccggcgtttg gcacagtcgc tacgtctact acagctcagg
      181 gcgtgaaagc gagttcgtcg gtgagcatta cgttgtgctc aaccagcagg agaatcaatt
      241 atccggacag agcctgccga attcactgca ttcactgtta actcttgacc tcgcagtcaa
      301 cgactcaact gcaactggag cctggattga gcgtacctcg ccgacaggct actacaatgg
      361 tgcggtatac cgaggcgcaa tccagttgct gatcgatccc acaggaagtg tgatgaccgg
      421 acgatggttg ggattcgaca aggaatcgaa cattaacacg ggtgattggg aattgatacg
      481 ggtcgcaggg ctcagctcga agagcgcact gcgcgagttt catttcaagg tatagtatgg
      541 gagtgccgca gtaaagaaaa ttaactcacc gaatcacctc gatcgtgttg aagtcgaaat
      601 agtgaccggc cgccgcagtc gctctgatgt gattcgagta cgctccaccg aagccagcag
      661 cgtgctcatg ccttgctctc gggcggctcc gatattgtac ttgagcttgc gccatttgtt
      721 tcccggcagc tctgcatgaa tcagatcatc ccgcttcaga tagaggcaca caccccgtga
      781 ctccacccgc gtgtcgcgga cctcaacgag cggagaagga agctgcaagg gaagcatcct
      841 gctgagaata gaagagatca cgactttcct cgcctgggga cacctcaccc tcaccgctac
      901 ctactccccg cacccgctgg agctggcgcg gagtttcatg accactggga gcgcgagtac
      961 gagcccatga ctgcggcaga gctgaaactc gccgagcagg gaagtcggag cccgactccg
     1021 agatgcccag cgatcgcatc ctcaccagcg acccgcagga cattcagcgc ctcgcgagtg
     1081 tggcgggcaa ctcagtcgcg atcgtcgact cctgaccgcc gacgctcttt aggttccatt
     1141 gaagcgcctc gcggttaaat ctgctaccgc tggccagttc acaaacacca cctcgtcgtc
     1201 gatccagcct gcgcaccgcg ttgtcactcg ctcactcgat cttggatcac caacgacgca
     1261 caccaccctt gccatcgaag ttagtgtagc ctaatctaat gtccattatg ggcgatttgc
     1321 tccttgagct ggtatgggta ccgcccgtag ctgcatcgtg gcccgcctgg tggcgagtac
     1381 tgaccgagct cgcctacttc ctcgccctgg cgtcggtcgt tggtgggacc gtgacgtatc
     1441 tcgcggtcct gcgtccggtg ttgcggacga cgcagatggg aatcaaggac gccgacgtga
     1501 tagtcatgtg gtgtcgcagc gtgacactgc tcgcctacgc tggtctcgcg cttctgctgg
     1561 ccgcttacgg cgagctcgcg ggccgggtcg cccgcgcgga tacgggcacc tcgttcggtg
     1621 aggcgctgac gccgccccgg atatggcagt tcctcgcgca gcccgcgaag gctggctcct
     1681 ggatatccac agggacattg ttcgtggcgc agtccgtact tttcctcgtg gtggccgcgc
     1741 tactcgtctc cctgctcgtg ccacgcgccc gagaccgtct caccagtgtg gccacgctcg
     1801 ccgcatcctt cgcagtgacg gcctcgctca tgaactcggt gcccacgaac ttgggcgacg
     1861 agaccgtcga cgacgtactc ggcgccatca tgtcccagac ccacatcatc gctggctgca
     1921 tctggctggg cggattggcc agcctcgcgc tgctggctcg gatccggcgg acactgagca
     1981 cgcaggcggg actgttctgg gcccgcatat ggcaacgctt cagcattctc gcgctcacca
     2041 ccgtgggcgc ggtgatcacc tcaggcgcct ggttgacgtg gaaacacgtc gggggccccg
     2101 gagagctaat caccacgaca tacgggcggt ttctcctggt caagcttttg ttggtactcg
     2161 ctctggtgtc ggccggcgcc tacaaccagt tcctgctcac gccgcgtatc gcacgggcgc
     2221 atgcggccgg tgaaatcagg aaaggtttcg ccctcacctt gcaccgcttc cccggcgtgg
     2281 tggccgttga gaccacactc ggagtctgcg tgttgctcat cgtgcccttt ctgaccggct
     2341 ccgcccgtgc ccaggccggt agcggtgcgg cccccaccgt cgatggcaac atcctcgccc
     2401 tggggctcgt tctcgtcgca tctctgggag ccagcttcta cgcggcacac cgggtctcct
     2461 tgttcctcac ccaccgcgcc gaggtagccg gcggctccac tgtctccgcc cgataacccg
     2521 agcagctaca tggcgttcgg gcaggcgaca ttggaacggt catcagctcg ctgaccgatg
     2581 acgtcgtctg cggccaactt ggtgagcgag cagtgaactc gcccctcgca cgttgccggt
     2641 cacgacacgg ccggcagctt ccttatgtcc tacgcgaccg tggcagtgac cgccgcgcgc
     2701 accaacggca cctgacaaga aaaatccccc gatacgcacc tacgggtggc ggctgccgcg
     2761 ggcgtcgccg ccgaaccgtg gcccgccgcc tggcacgact ggcagttcga gctcttccca
     2821 cccagtcgaa acaggtgaga gaacttgtct cacggtgtcc gcgagggcct cggtaaggtg
     2881 ctgacgtagg ctgcgagatg ctcgccggtg agggtgcagc gggtggtgac gaggtcggtg
     2941 ggggtgccct cgaagacgat ccggccgccg tcgtggccgg c
//
LOCUS       DASVXZ010000634         4622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1379445, whole genome shotgun sequence.
ACCESSION   DASVXZ010000634 DASVXZ010000000
VERSION     DASVXZ010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379445"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VF788_13260"
     CDS             <1..217
                     /locus_tag="VF788_13260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935130.1"
                     /translation="VRHAQIRGPGPATSARRRPCHFPTPDAVATTRPSPNSPEPAPLE
                     ASNGQTTRYLLMLLLENGCVTLRLLAM"
     gene            complement(617..1609)
                     /locus_tag="VF788_13265"
     CDS             complement(617..1609)
                     /locus_tag="VF788_13265"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935131.1"
                     /translation="MGRRGKVPSIGECALSVTGTSMSRCCSCVCVNVHGRTSLTAAGR
                     PTVVGILLGTQLRRLRKASGISVEVASHAIGASHTKISRMERGQVGFKAREVADLLTL
                     YGVADQHQRQTLLTLSLQANAADWAHYYSDLLPSWGATYLGLEQASSVIRTYQPQVVP
                     DLLQTEDVARALQRLRHPSDSALDIERRVAVQMTRQEILTDPSAPQLWAVIDQAALWW
                     LAGSSALWEQVRHLITMAELPRVRLQVLPVLSGERVAINSPLTILRFADPELPDVVYY
                     QQQTTALCLDRDEDVQHYRALMDNVGVLAKSPTQTINHLSTLLTNECPQASAAG"
     gene            complement(2743..3849)
                     /locus_tag="VF788_13270"
     CDS             complement(2743..3849)
                     /locus_tag="VF788_13270"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF005655.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HEX8935132.1"
                     /translation="MSIYPVEQNRQPVATRPVILGVVGDSATGKTTLTRGLVRTLGEG
                     AVAHIGTDDYHRFDRRRRAELGITPLNPDCNYIDIMAQHLALVRAGEPILKPVYRHSD
                     GTFGPPEYLQPHRFAVVEGLLGYHTPQLRDCYDVRVYLAPPEGLRRRWKVQRDCSRRG
                     YTTDQVLTELDRREPDSEVFIRPQQVYADIVVTFEAGDEGDVEHLPAQLKLRKGLHHP
                     DLSPLLDADVGITMKDAVDAQVLRIPGRVPPERAAEIEHAIWERMHFASHLRSERLGE
                     FTVGTNLHRSESLALVQLLLLYHLVMAKAAVALGGVGARVDGSIAMAGVGRAGEAAAE
                     SESAPTESEREGVPTPAHAESDEGRGDPASKQLQ"
BASE COUNT          865 a         1461 c         1397 g          899 t
ORIGIN      
        1 cgtgcgccat gcccagatcc gaggtcccgg cccggccacc tccgcgcgca ggcgaccgtg
       61 tcattttccc acgccagacg ctgtcgcaac gacgcggcct tcaccaaact cgccggaacc
      121 agcgcccctg gaggcatcca acggtcagac cacccgctat ctactcatgc tgctgctgga
      181 gaacggatgc gtcactttga ggctgctagc catgtgacca aatttgtgac caggacggct
      241 atgtcacgcg atgacaccag acagaagggc tgagacggcg catcgcggcg ggcaggtcag
      301 ctgggctgtc gagagtacga gtgggacggt gtgaaacggc tgcatgccga ctcctcagca
      361 gaggtcacag gttcgagacc cgcctccgat tcgccctgtc ccatagcgtc acaggggaaa
      421 tcttcacgag gcaacgggga cttgatgatc tcatctttgg tctcatccgt ctacgttcgc
      481 ctacgttcat cgacattcag atctatgcgt caatgcaggt cgcggacgtc tacggtattc
      541 agcgaactat catcctaact cctgaaaatc ggaaggttga ctgttcgtct ctatccttgg
      601 tgatccagct agttgcttaa cctgctgcgc tcgcctgtgg gcactcattt gtgagtaatg
      661 tactcaggtg gttgatcgtt tgtgtcggcg atttggcaag cacgcctacg ttgtccataa
      721 gtgctcgata atgctgcacg tcttcatccc tgtcgagaca cagtgcagtg gtctgttgct
      781 ggtaatagac gacgtctggc agctcgggat cggcgaaccg caggattgtc aagggactat
      841 tgatggccac acgctcgccg gacaaaacag gcaacacctg caacctgacg cgtggtaact
      901 ctgccatggt gatcagatgc cggacctgct cccacagtgc cgaagacccg gcaagccacc
      961 acagcgcggc ctgatcgatc accgcccaca gctgcggtgc gctgggatca gtcaagattt
     1021 cctggcgggt catctgcaca gcgacccgac gctcgatgtc tagggcggag tcacttgggt
     1081 gtcgtaaccg ctggagggca cgggcgacgt cctccgtctg gagcaggtcg ggaaccacct
     1141 gcggttgata ggtacggatc accgagctgg cctgctctag acctaggtag gtcgcccccc
     1201 aacttggcaa cagatcgctg taatagtgcg cccaatccgc tgcgttggcc tggagagaca
     1261 gcgtcagcaa cgtctgacgc tgatgttgat cagcaacacc gtacagggtc agcagatcgg
     1321 ccacctcgcg cgccttgaac ccgacctgac cgcgctccat acggctgatc ttggtgtgag
     1381 aggccccgat cgcgtgactg gccacctcga cgctaatacc actggctttg cgcagtcggc
     1441 gcaactgcgt acctaacaga atgcctacca cggtgggcct cccagcggct gtcagggacg
     1501 tcctgccatg cacgttcaca cacacgcagc tgcagcaacg actcatactc gtgccggtta
     1561 ccgaaagtgc acattcgcca atagagggaa ccttgcccct tcgtcccatg acgtggcccc
     1621 atcggctcga tatgcgcaga gattaaagtc tgtcccatct acgccattta gccgcttcgg
     1681 cagttgttac cggattgtcc gcatcgacgg cccactgcat cccttttgcc catttcgttt
     1741 cccgtagggg acaggctgat caatgcctcc gaatgggtgg gttctatcag gccctcaccc
     1801 cctagttcct caaataactc aacggcgctg ttacgacacc agggtgcccg tggacgtgtg
     1861 gcggggagtc gtcatgatga aagcagcagc taaaaagcga ctggcaagat attggggcta
     1921 cattctggtg atcatcttgt acttcggctg gtttgagatt caccttgatc ccgtggttct
     1981 cgttagcatg tcctcgctag tggtagttta ctgcttattt caagcaccgg ttccatgttg
     2041 tgcgttaact cgtagatacg ggtattgccg aaacaatgcc atcggcctgt tgcgtggttg
     2101 ccatctcgaa gcacacaagt ggcagaatct tcgactactg gtcaaacaac aagcctgggc
     2161 gcaggttggt agaggagtct ttcatagcgt cagtggcaac gctgctgcgc tatcggcgct
     2221 agcaggaatt gtatcagcgt cggccgcggc aattaccttt gtagcccatt gacgaaaatg
     2281 cgcgctggct gggaccgtca ccgtgccaca ctcggacacc ggccaggcga acgctgcgta
     2341 ttcacatcgc gcggaccgat caggcacctg cctgcatctg catgacaccc gtctctgtcc
     2401 aaagctgttc ctctcgatga tcaccgtcag tggatcgtca gcgaatgtgg cacgacgatg
     2461 cgacacaggt cgacgcccac cgacacgtag ccgcagctca gcggcacgcg atatcactcc
     2521 ccggtaaggg gcgcacggcc aatcagcgtt cacacaagtg tgctcaccaa tccaagagta
     2581 ggcagcctga gcctccggcg ggccttactc cgggatcgcc cccgagatgc gcacgaaagt
     2641 ggtgggtcac ctgaagcggg gtatcccgtc gtgtcggcgc cgtggtggga ccatggccgg
     2701 gcagcgagac ggtatcgacc tctgtcctgt tggcgtgctt cctcattgaa gctgctttga
     2761 tgcaggatcg cccctgccct cgtcggactc tgcgtgcgcc ggggtcggga cgccctccct
     2821 ttcggactcc gtcggggcgc tttcgctctc tgccgccgcc tcgcctgccc tgccgacccc
     2881 ggccatggcg atgctgccgt caacacgggc gccgacgccg cctagggcga cggccgcttt
     2941 ggccatgacc aggtgataga gaagcaaaag ctggacaagg gccagtgact ccgagcggtg
     3001 caggttggtg cctactgtga actcacctag ccgctccgag cgcaagtggc tggcgaaatg
     3061 catccgctcc cagatcgcgt gctcgatctc agccgcccgc tcgggcggga cgcggccggg
     3121 gatgcgcagt acctgcgcgt cgacggcgtc cttcatggtg atcccgacgt ccgcatccag
     3181 caggggagag aggtcggggt gatgcaggcc cttccgcagc ttcagctgcg ccgggaggtg
     3241 ctcgacgtcg ccctcgtcgc ccgcctcgaa cgtgacgaca atgtccgcgt agacctgctg
     3301 cggcctgatg aaaacttccg aatcgggctc gcgccggtcg agctcggtga gcacctggtc
     3361 cgtggtatat ccacgccggg agcagtcgcg ctggaccttc caccggcgtc gcaggccctc
     3421 aggaggagcg agataaaccc gcacgtcgta gcagtctcgc aactggggcg tgtggtagcc
     3481 aagcaggccc tcgacgaccg cgaaccgatg cggctgtagg tactctggcg gcccgaacgt
     3541 cccgtcggag tgccgataga ccggcttgag gatcggctcg ccggcccgga cgagcgcgag
     3601 atgctgggcc atgatatcga tgtagttgca gtcggggttg agcggcgtga tgccgagctc
     3661 ggcgcgccgt cggcggtcga acctgtggta gtcgtcggtg ccgatatggg cgaccgctcc
     3721 ctcgccgagg gtgcgtacga gccctcgggt cagagtggtc ttgcccgtag ccgagtcgcc
     3781 gacgacgccc aggatgaccg ggcgcgtggc caccggctgc ctgttttgct cgaccggata
     3841 aatactcatg gccctgcctc cggtgaaagt ctcccgcctg cagccgacgt tcggtaacgc
     3901 ggactcggcg ggtcaccgcc ctcctggccg gaaatctgag atgcgcagcg gatgtccatc
     3961 gctcgctccc ctcctcaggt tgcactcgat ctttccaccc agctgccccg cgctcaatcg
     4021 accggcccca acccgccggc cgacgtgacg ggatacccgc ttccgccccg gccgttctat
     4081 gtcaggccaa cacacccccg catcattcgc cagcggtaac ggcgcgatga gttcgtacgg
     4141 ccgttcgtcg cgggcaggtg accaccgggg gtaggcaggg tgttggtaac ggtggcggtg
     4201 acgagacgct gcgcgaccaa ccgcgtcgac tgagacagag cggacgacgc agctgccagg
     4261 agtcgggact gaccagctcg aatgcatcca gtcgggacag atgaaacgcc cctgggactg
     4321 ctcataaccc agcaactccc ggaccttcgt cgtacgcgcc agcaggtcaa cccctgcagc
     4381 agcgcctcag gtgcaagggg ctgtgtccaa tacgtgccta agtcggatgc tggggcgcat
     4441 cgcttgccgc tccatcgcag atcaataacg gtagcgagct cggaagccag tcctcttaaa
     4501 agggcctcag tggtggggat caccgcggcc atcgttctcc gcggtcctcg attcctactc
     4561 ggtcacgcca ctctggaacc ggccggccgc cgggagccga agcgggtaag tggtcaacag
     4621 gg
//
LOCUS       DASVXZ010000635         3351 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_251201, whole genome shotgun sequence.
ACCESSION   DASVXZ010000635 DASVXZ010000000
VERSION     DASVXZ010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3351
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251201"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1180)
                     /locus_tag="VF788_13275"
     CDS             complement(<1..1180)
                     /locus_tag="VF788_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF255 domain-containing protein"
                     /protein_id="HEX8935133.1"
                     /translation="MANRLASSTSPYLLQHATNPVDWWPWCAEAFMEATRRNVPVLLS
                     IGYAACHWCHVMAHESFENQQIAAVMNANFVNVKVDREERPDVDAIYMEATQAMTGHG
                     GWPMTCFLTPTGEPFHCGTYFPPSPRHGMPGFPELLIAIRQAWASRGEQVREAAKRIA
                     GQLAERATPLTESAVDDQVLAAAVDKLGGEFDEAHAGFGGAPKFPPSMLLEFLLRHHE
                     RTGSESALSMAERTCESMARGGIYDQLAGGFARYCVDAAWVVPHFEKMLYDNALLLRV
                     YTHLARLTGSTTARRVAEQTAAFLLEGLGTAQGGFAASLDADTAGVEGATYVWTPQQL
                     VEVLGPDDGQWAAASTATASTPSGWCRISRRCSTTTRCSPATTRSRTGSPAGPSTGGS
                     P"
     gene            complement(1286..1501)
                     /locus_tag="VF788_13280"
                     /pseudo
     CDS             complement(1286..1501)
                     /locus_tag="VF788_13280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694305.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1498..2388)
                     /gene="mca"
                     /locus_tag="VF788_13285"
     CDS             complement(1498..2388)
                     /gene="mca"
                     /locus_tag="VF788_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010126 - mycothiol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol conjugate amidase Mca"
                     /protein_id="HEX8935134.1"
                     /translation="MTEQLRMMAVHAHPDDESSKGAATMALYVADGHEVMVVTCTGGE
                     RGSILNPSFEPADLAERPAEMSAVRQQEMAQAARILGVQHRWLGYIDSGLPDGDPTPP
                     LPDGCFAVVPLEGPTRDLVRLMREFQPHVVVTYDEKGGYPHPDHIRCHEVSVAAFEAA
                     GDPERFPEAGAPWQPLKLYYSHGFSRARMQLLHEALLAAGKESPFTEWLAKWDPATPD
                     VMDRVTTRVRCAEYFPVRDDALRAHATQIDPASRWFAVPHTIQAQLWPTEEYELARSL
                     VDTTLPEDDLFSGVRERVLA"
     gene            2533..2964
                     /locus_tag="VF788_13290"
     CDS             2533..2964
                     /locus_tag="VF788_13290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4307 domain-containing protein"
                     /protein_id="HEX8935135.1"
                     /translation="MAAGQLPEGRYGRRAAGDRRRWAVPAGLALAVLIGLGVAVIGYR
                     NLGAPPIQGEALSFTLLEGQAVQLRLSVIRDDPSRAAVCIVRARSRDGEETGRKEIYV
                     PPADGPIVLSTVVHTSRPPVTADVYGCSFQVPPYLVPAPKY"
     gene            3185..>3351
                     /locus_tag="VF788_13295"
     CDS             3185..>3351
                     /locus_tag="VF788_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEX8935136.1"
                     /translation="MSETQVAWLTQEAYDRLKQELDELVANRPVIAAKINDAREEGDL
                     KENGGYHAARE"
BASE COUNT          563 a         1155 c         1086 g          547 t
ORIGIN      
        1 tcggcgatcc gccggtgctc gggcccgccg gtgatccggt gcgcgatcgc gtagtcgcgg
       61 gcgagcagcg cgttgtcgta gagcatcttc tcgaaatgcg gcaccagcca gatggcgtcg
      121 acgctgtagc ggtggaagcc gccgcccact gcccgtcatc agggcccagc acctccacga
      181 gctgctgcgg cgtccacacg taagtagcgc cctccacgcc tgcggtatcg gcgtccagag
      241 acgccgcgaa gccaccctgc gcggtaccca gcccctcgag caggaacgct gccgtctgct
      301 cggccacccg tcgagcagtc gtcgacccgg tcagacgcgc caggtgggta tagacccgga
      361 gcagcagcgc gttgtcgtag agcatcttct cgaaatgcgg caccacccag gcggcatcaa
      421 cgcaatagcg cgcgaatcca ccggcaagct ggtcatagat cccgccgcga gccatcgact
      481 cacaggtacg ctccgccatg gacagcgccg actccgaacc ggtccgctcg tggtgtcgga
      541 gcaggaactc cagcagcatc gacggtggga acttcggggc accgccgaat ccggcgtgcg
      601 cctcgtcgaa ctcgccgcct aacttgtcga ccgcagcggc cagcacctga tcgtccacgg
      661 ccgactcggt cagtggcgtg gcccgctcgg cgagctgacc agcgatgcgc ttggccgctt
      721 cccgaacctg ctctccgcgg ctggcccacg cctggcggat cgcgatcagc agctcgggga
      781 agccaggcat gccgtggcgg ggagatggcg ggaagtaggt cccgcagtga aatggctctc
      841 ctgtgggggt gaggaagcag gtcatcggcc accccccatg gccggtcatg gcctgggttg
      901 cctccatgta aatggcgtcg acgtcaggac gttcctctcg gtccaccttc acgttgacga
      961 agttggcgtt catcaccgcc gcgatctgct ggttctcgaa ggactcgtgc gccatcacgt
     1021 ggcaccagtg gcaggcggcg taaccgatgg acagcaacac gggcacattc cgccgggtcg
     1081 cctccataaa cgcctcggca caccagggcc accaatcgac cggattggtg gcgtgctgca
     1141 gcaggtaggg gctggtggag ctcgcgagcc ggttcgccat gtcggctatc ctccctggcc
     1201 cggccgtatc acggaaccat tcctcctcac gacgccgagt tactcaccag tcgcccagtt
     1261 actcacgagt gtcggtgccg gtttcgtcgt cgaaagactt cggcacccgg cgcaggtgct
     1321 tgttcatgga gcgcaccagt agcgccaccg cgaggaagaa cagcagcaac accactaaac
     1381 cgaccggcgc ggccttgccg aaatcctcac cctgtccacc aggatcgggt ggcgggggcg
     1441 gcggcgcgac cgtctcgaac ccggttaacg ccgagaaatc ccccgggagc agcaggttca
     1501 tgcgagcacc cgctcccgga caccggagaa caggtcgtct tcgggcaacg tggtgtcgac
     1561 cagcgaacgg gccagctcgt actcctcggt cggccacagc tgggcctgga tcgtgtgcgg
     1621 caccgcgaac caccggcttg ccgggtcgat ctgggtggcg tgagcccgga gcgcgtcatc
     1681 gcgtaccggg aagtattcgg cgcatcgcac ccgggtggtc acccgatcca tcacatctgg
     1741 cgttgcggga tcccacttgg cgagccattc ggtaaagggc gactccttgc cagccgcgag
     1801 cagtgcctcg tgcagtaact gcatccgtgc acgggaaaag ccgtgcgagt agtaaagctt
     1861 gagcggctgc cacggcgctc cggcctcggg gaagcgctcg ggatcacccg cggcctcgaa
     1921 cgcggccacc gatacctcgt ggcagcggat atggtcaggg tgcgggtagc cacctttctc
     1981 gtcataagtc accaccacgt gcggctggaa ctcgcgcatc agccggacca ggtcccgggt
     2041 gggaccctcc agcggtacca ccgcgaagca cccgtccggc aacggtggtg tcggatctcc
     2101 gtcgggcaac ccggagtcga tgtaacccaa ccaccggtgt tgcacaccca ggatccgcgc
     2161 tgcctgggcc atctcctgct gccggaccgc gctcatctcc gccgggcgct cggccagatc
     2221 tgccggctcg aaggatgggt tcaggatgct gcctcgttct ccgccggtgc aggtgacgac
     2281 catcacctcg tgaccgtcgg ccacataaag ggccatggtc gccgcacctt tgctggattc
     2341 gtcgtcggga tgcgcgtgca ccgccatcat tcgcagctgc tcagtcatgg acgcctgctc
     2401 atcccttctt cactgccgcc tcacgcgggc taccccgggc gaccggaatt cttcgtggtc
     2461 tggaccattg ttcccggccg gaccgacagt cccggccacc gggccgtcca gccatcacgg
     2521 aggtgcaacg ccatggccgc tggccagctt cccgagggtc gttacgggcg gcgcgccgct
     2581 ggcgaccgcc gccgttgggc cgttccggcc gggctcgctc tcgcggtcct catcgggctg
     2641 ggggtggcgg tgatcggcta ccgcaacctc ggcgccccgc cgatacaggg cgaggcgctg
     2701 agcttcacgt tgctggaggg ccaggcggtg caactacggc tgagcgtgat ccgggacgac
     2761 ccgtcgcggg ccgcggtgtg tattgtccgg gcccgctctc gagatgggga ggaaaccgga
     2821 cgcaaggaga tctacgtgcc tcccgcggac gggccgatcg tcctgtccac cgtcgtacat
     2881 acctcccggc caccggtcac cgcggacgtc tacggatgct ccttccaggt gcccccctac
     2941 ttagtcccag ccccgaagta ctgacttcac cactgactta agagccccgc tgagcaggca
     3001 cgattgccag ccgttcaccc gttaggctga ggccgaaccg gacacctcgt gttaccgtgg
     3061 agggtacgca cggccccggg gcagggccgt gtttttccgt tccggccgct ggctgtcatg
     3121 ccagcggctc ggttcggtcc gccccgcggt agcggacgtc ggatctgaag gaggaatgat
     3181 gaccgtgagc gagacccagg tggcctggtt aacccaggaa gcctacgacc ggctcaagca
     3241 ggaactcgac gagctggtcg cgaaccgccc tgtcattgcc gcgaagatca acgacgcccg
     3301 cgaggaaggg gacctcaagg agaacggcgg ctaccacgct gcccgcgagg a
//
LOCUS       DASVXZ010000636         6700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_340318, whole genome shotgun sequence.
ACCESSION   DASVXZ010000636 DASVXZ010000000
VERSION     DASVXZ010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6700
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340318"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..812)
                     /locus_tag="VF788_13300"
     CDS             complement(189..812)
                     /locus_tag="VF788_13300"
                     /inference="COORDINATES: protein motif:HMM:NF028169.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8935137.1"
                     /translation="MSSVTEACKPANTLADHRKGPRRRGDILHAAIFEATLEELTAVG
                     YAELKMEHVANRARASKGSLYRRWSSRAELVVDAVHYTIPSCAERPDTGSVREDLLGC
                     LRGFAKLLNGPSGEAIRGLMAETIRNPDLMEVVRIRFIDPGVGLFLEVLRRGAVRGEV
                     RASTITPRIASLGPDLLREHFMVHRTPIPDRVLIEIVDEVIIPLIRA"
     gene            973..2679
                     /locus_tag="VF788_13305"
     CDS             973..2679
                     /locus_tag="VF788_13305"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX8935138.1"
                     /translation="MAHPVATEPAETAPNGATPRPAGEVALGEGVGERWQLPLVVLIV
                     GMFMSILDISIVTTALPTIQNEFGATTSDAQWVVTAYSLTEGVVVPATAWLGDRFGLS
                     RVYNLALMGFAAGSALCGLAWSLNTLVIFRIVQAFLGGILPAITMSILLQIVPRSKLG
                     AALGMYGLGAVVAPAVGPALGGYLVEYANWRLIFFINIPIAILGTVAAVLVLPRFQRK
                     ADRRFDVLGFITVACGLFALLLALSKGEDWGWTSYRILMLFAFSALSLALFVVIELEV
                     DDPLLDIRVFRYGAFTLSLVLISLLMVVLFSTAVYVPQLLQLGQGLGPFDSGLVLLPP
                     AIVMGILMPIAGRIYDLIGPRWPTFIGLSIAAVATYLLRTINLDTTSAHITWLLMLQY
                     GGLGVGMMPLFSAGLAVIPPAFTNTASAFNNVVQRTAAALGVAVFTAILVLQQAQLMG
                     GRLALLPANTPTPHLGPPGTPDWTGLYATYHHTELQVFVAAISNMFLIMAGLCVVGAL
                     GALLLRSGPAPATPAGVTPPAQAPATLPSPNGDRHLSASAAASTNGHLASNSARHGDI
                     SV"
     gene            2947..3564
                     /locus_tag="VF788_13310"
     CDS             2947..3564
                     /locus_tag="VF788_13310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935139.1"
                     /translation="MNSLHLALNVSTGTQLIKGEGDTKLADGTLQALDITEEVGSAGR
                     VRLIVADGKTYVQLPATMNQSGKPWVLVSRDSSNPTVRTMATLIESVQSAASPSQITA
                     FTSAARRVTLVGNEPLDGTQVDHYSIDVDVDKLPNTLPGRQLLLGAGLTSLPVELYVD
                     GEGRPVKVTQDLTVRGQHSSTVITLSKFNEPVSISAPPADQVATS"
     gene            3730..5382
                     /locus_tag="VF788_13315"
     CDS             3730..5382
                     /locus_tag="VF788_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family protein"
                     /protein_id="HEX8935140.1"
                     /translation="MRLTSTSDLWWKNAVVYCLDVETYQDGNGDGHGDFRGLIQRIDH
                     LHRLGVTCLWLMPYYPSPDRDDGYDITDFYGVDPRLGSHGDFVEFMRTARDRGIRVIA
                     DLVVNHTSDQHPWFQSARSSPHSPYRDWYVWADEPPADGPQGIVFPDKETSVWTYDKV
                     AGQYYLHRFYKCQPDLNVTNPEVRDEIARTIGFWLQLGLSGFRVDAVPFLLETTGQDD
                     AERLPHPHDYLADLRAFLGRRCGEGMLLGEVNLPYPDIMTFFGAQRDELTMCFDFIVM
                     QRMYLSLARGNAEPLAESLRDRPQSPKDAHWATFVRNHDELTLDKLTDTQRQEVFEAF
                     GPDPEMQLYDRGLRRRLPPMLGGDRDRIRMVYSLLFSLPGTPVLFYGEEIGMGEDLRA
                     EGRLAVRTPMQWSPEPGGGFSTAEASELPGPIPEGEYGPEHVNVAAQERDPESLLSWM
                     RSLIESYRACPELAWGRCEVLDAGDAAVLAHRCDTEGGTVVAVHNFGAESTTAALKLT
                     GLDGSCLLTDVLAEGSERVKKDGSVTLQLKRYGCRWLRVEHP"
     gene            complement(5392..6099)
                     /locus_tag="VF788_13320"
     CDS             complement(5392..6099)
                     /locus_tag="VF788_13320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RraA family protein"
                     /protein_id="HEX8935141.1"
                     /translation="MDHLELRQRFATLTTAHLADACIRAQIPVRCAPALLRAVVPGSR
                     LAGRASPARHVGSVDIFLEAIDGAAPGDVLVIDNGGRFDESCVGDLVVLEAQAAGLEG
                     IVIWGLHRDTADIRVMGLPIFSLGTIPTGPQRLDIRPPDALQSATVGGWTVRRADLVL
                     GDDDGVLFVPATRAGNIFTLAETIRDTERRQAERIRAGVSLRSQVQFDTYLAQRRQIP
                     SLSFRDHLRVVGGAVEE"
BASE COUNT         1164 a         2161 c         2151 g         1224 t
ORIGIN      
        1 ggtccggacc ggctcccact gtgacggccg cctcgtcccc accggcggct ggacctacga
       61 agacggccga ccacggtccc ataacggacg gtcagccatc gcggggcgca gtcagaaacg
      121 gcgcggctcg gcctggcaag aacctggtcg acgccgagcg caacggccgt ccacgggaga
      181 gctgagcctc aggcgcggat cagcggaatg atcacctcgt cgacgatctc gatcagcact
      241 cgatcaggga tcggcgtgcg gtgaaccatg aaatgctcgc gtagcagatc gggccccagg
      301 cttgcgatgc ggggtgtgat cgtgctggcg cggacctcgc cgcgaacggc gccccgcctg
      361 agcacctcaa ggaaaaggcc gacgccagga tcgatgaagc ggatgcggac gacctccatg
      421 aggtcaggat ttcgtatcgt ctcggccatc aggccgcgga tcgcctcacc ggaggggccg
      481 ttgaggagtt tggcgaatcc ccgcaggcag cccaggagat cttcgcgcac actgccggtg
      541 tcgggccgtt cggcgcagct gggaatggtg tagtggaccg cgtcaactac taactcggcc
      601 cggctcgacc agcgccggta caaggacccc ttgctcgcgc gagctcggtt ggccacgtgc
      661 tccatcttca gctcggcata cccgaccgcg gtcaactcct cgagggtggc ctcgaagatc
      721 gcagcgtgaa gaatgtcacc tcgtcgccgg ggtcccttgc gatggtcggc cagggtattc
      781 gcaggcttgc aagcctcagt gacgctgctc acgtccacac ctcatcgtgc tctaggtcac
      841 accagatgtt acgggataga agcggggcgt acagattaga gcacgtagcg ttccgattgc
      901 ccagtagtgg tcatgatcag agtcacagga aatgggtaga gaacgactcg tttcttatgg
      961 cacggtggtg tggtggctca ccctgtggcg acggagccgg cggaaaccgc cccgaacggg
     1021 gccaccccac ggcccgccgg tgaagtggcg ctcggcgaag gcgtcggcga gcgctggcag
     1081 ctgccgctgg tggtgctgat cgtcgggatg ttcatgtcga tcctggatat cagcatcgtg
     1141 accacggcgc tgcccaccat ccagaacgag ttcggagcga cgaccagtga cgcacagtgg
     1201 gtggtcaccg cctactcgct gaccgagggc gtggtggtcc cggctactgc gtggttgggt
     1261 gatcgcttcg gcttgagccg ggtctacaac ctggcactga tggggttcgc cgccgggtcg
     1321 gcgctgtgcg gactggcgtg gagcttgaat actctagtga tcttccggat cgtccaggcg
     1381 ttcctcgggg ggatcctgcc ggcgatcacg atgtcgatcc tgttgcagat cgtgccgcga
     1441 agcaagctcg gcgccgcgct gggcatgtac gggctcggtg ccgtggtcgc cccggcagtc
     1501 gggccggcgc tgggcgggta tctggtcgag tacgcgaact ggcggctgat cttcttcatc
     1561 aacataccga tcgcgatcct gggcacggtg gccgcggtat tggtactgcc caggttccag
     1621 aggaaggccg atcggcggtt cgatgtgctg ggcttcatca ccgtggcatg tgggttgttc
     1681 gcgcttctgc tggcgttgtc gaagggcgag gactggggtt ggacctccta ccggattctg
     1741 atgctgttcg ccttcagcgc gctgagcctg gcgttgttcg tggtgatcga gctggaggtt
     1801 gacgacccgc tgctcgatat ccgggtgttc cgttatgggg cgttcaccct ctcgctggtg
     1861 ttgatctcgt tgctgatggt ggtgctgttc agcacggcgg tttatgtgcc gcagctactg
     1921 cagttgggcc aaggcctggg gcctttcgac tccggactcg tcctgctccc gccggcgatt
     1981 gtgatgggca tattgatgcc tatcgccggg cgcatctatg acctgatcgg acctcgatgg
     2041 ccgacattca tcggcctgtc gatcgcggcg gtggccacct acctgttgcg gactatcaat
     2101 ctcgacacca ccagtgcgca catcacgtgg ttgctgatgc tgcaatacgg cggtctaggt
     2161 gtcggcatga tgccgctgtt cagtgcaggt ctggcggtca tccctcccgc gttcaccaac
     2221 actgccagcg cgttcaacaa cgtcgtgcag cgcaccgccg cagcgcttgg cgttgcggtg
     2281 ttcaccgcga tcctcgtcct ccagcaggcg cagctgatgg gcggacgcct cgccctgctg
     2341 cccgcgaaca cccccacgcc gcacctcggt ccgcccggaa ccccggactg gacgggtctt
     2401 tacgccacct accatcacac cgaattgcag gtgttcgtcg ccgcgatcag taacatgttc
     2461 ctgatcatgg ccgggctctg cgtcgtgggc gcgctggggg cgctcctgct ccgatccgga
     2521 cccgctccag cgaccccggc tggcgttact ccaccagcgc aagctcccgc cactctgccg
     2581 tccccaaatg gcgatcgtca cctcagcgcg tccgccgccg cgtccaccaa tggccacctc
     2641 gcatcgaatt ccgcccgaca tggagacata tcggtttaat gggagggtca ataatccgga
     2701 catgtctcca tgtcgcgtgg cgagggcatc gagctcgcgc ggtagcatgg tgtgatgatc
     2761 tccgtacgct gggtggtcac cgttgctatg tgctgcccgg ccattgcgtt ggcgggctgc
     2821 tccgcgagtg acaccggaca gccgtcaagg ggtaacgcga cgactaccac ctcggccgtc
     2881 ccgccgtcac ctgcccccac tgacgccacc aggctcgcag cactgcttcg ccagggcgtc
     2941 tcttcggtga actcactgca tctcgccctc aacgtgtcga ctggcactca gctgatcaag
     3001 ggcgagggcg acacgaagct cgccgatggc accctgcagg ccctggacat cactgaagag
     3061 gtcggatctg cgggcagggt gcgactcatc gtcgccgacg ggaagaccta cgtgcagctt
     3121 ccggcgacga tgaaccaatc cggcaagccg tgggtgctcg tcagccggga cagcagcaac
     3181 ccgacagtgc gaaccatggc gacgttgatc gaatcagtgc aaagcgcggc ctcgcccagc
     3241 caaatcaccg cgttcacctc cgccgcgcgg cgcgtcacgc tcgtcggcaa cgagccgctc
     3301 gatggcactc aggtcgatca ttactcgatc gatgtggacg tcgacaagct cccgaacacc
     3361 ctgcctggcc ggcagctgct gctcggtgcc ggtctcacga gcctgcctgt cgagttgtat
     3421 gtcgacggcg agggccggcc ggtcaaggtc acccaagatc tgacagtgcg cgggcagcac
     3481 tcctccaccg tcatcacctt gagcaagttc aatgaacccg tctcgatcag cgctcccccg
     3541 gccgaccagg tagccacgtc ctgacccgga gtcgtagcct ttcgagtatg ccgctccact
     3601 gtccggtgcg ccgcccgatc ctgttagccg gtgctccgca cgacgtggct ggtgcgcgga
     3661 gtgagccgac ggtctaatca ctggcaggaa gtcatcgacg cgttcggcgt ccgtcgtcag
     3721 ggagctgcca tgaggctgac cagcacgtcc gatctatggt ggaagaatgc cgtggtctac
     3781 tgcctggacg tcgagaccta ccaggacggc aatggtgatg gacatggcga ttttcgtggc
     3841 ctgatccagc gcatcgatca cctgcaccgg ctcggcgtga cctgcctgtg gctgatgccg
     3901 tactacccct cgccggaccg cgacgacggc tacgacatta cggacttcta cggcgtcgac
     3961 cccaggctgg gcagccacgg tgatttcgtc gagttcatgc gcaccgctcg cgaccgcggc
     4021 atccgggtga tcgcagacct ggtggtcaat cacacctccg accagcatcc atggttccag
     4081 agcgcccgca gcagccccca ctcgccgtac cgcgactggt acgtctgggc agacgagccc
     4141 cccgcagatg gtccgcaggg catcgtgttc ccggacaaag agaccagcgt ctggacctac
     4201 gacaaggtcg ccggccagta ctacctgcac cggttctaca aatgccagcc ggacctcaat
     4261 gtgaccaacc cggaggtgcg cgacgagatc gcacggacga tcgggttctg gttgcagctt
     4321 gggctgtccg ggttccgggt cgatgctgtc ccgttcctgc tggagacgac cgggcaggac
     4381 gacgccgagc ggcttccgca cccacacgac tacctcgccg acctgcgggc gttcctcggc
     4441 cggcgctgcg gtgagggcat gctgctcggc gaggtcaacc tgccctatcc ggacatcatg
     4501 accttcttcg gcgcgcagcg tgacgagctg accatgtgtt tcgacttcat tgtcatgcag
     4561 cggatgtacc tgtcgctggc ccgcggcaac gccgaaccgc tggccgagtc gctgcgcgat
     4621 cggccgcaat cgcccaagga cgcgcactgg gcgacgttcg tccgcaacca cgatgagctg
     4681 acgctggaca agctcacgga cacgcaacgt caggaggtgt tcgaggcgtt cgggcccgac
     4741 ccggagatgc agctctacga ccgcggcctg cgcaggcggc tgcctccgat gctcggcggc
     4801 gaccgagatc gcatccggat ggtgtacagc ctgctgttct cgctgccagg cacgcccgtc
     4861 ctgttctacg gcgaggagat cggcatgggc gaggacctcc gcgcggaggg tcggctggcg
     4921 gtgcgcacac cgatgcaatg gtcaccagaa ccgggcggcg gattctccac cgcagaggcg
     4981 tccgagctgc ccggtccgat cccggagggc gagtacgggc ctgaacacgt caacgtcgct
     5041 gcccaggagc gtgacccgga gtcgctgctg tcctggatgc ggtcgctgat cgagtcgtac
     5101 cgggcctgcc ccgagctggc ctggggacgc tgtgaggtgc ttgatgccgg tgacgccgcc
     5161 gtgctcgcgc atcgctgcga caccgagggc ggcacagtcg ttgcggtgca caacttcggt
     5221 gccgaatcga cgacggcggc gctgaagctg accgggctgg acggttcctg cctgttgacc
     5281 gacgtgctgg ccgagggctc ggaacgggtg aagaaggatg gttcggtgac cctccagctc
     5341 aagcggtacg gctgccgctg gctacgcgtc gagcacccat gagatgcggg gttattcctc
     5401 aacggcccca cccacgactc gaagatgatc acggaagctc agcgaaggta tctgtcggcg
     5461 ctgagcgagg taggtgtcga actgcacctg actgcgcagg gagacacccg cacggatccg
     5521 ttcggcttgg cgtcgctcgg tgtcgcggat cgtctctgcg agcgtgaaga tgttcccagc
     5581 gcgggtggct ggcacaaaca gcacgccatc gtcatcgcca aggaccaagt ccgcacggcg
     5641 gacggtccaa ccgccaacag tggcggactg caatgcgtca ggggggcgga tatcgaggcg
     5701 ctgaggaccg gtggggatcg ttcccaagct gaagatcggc agccccatca ctcgtatgtc
     5761 agccgtgtcg cgatgcaggc cccagatcac gattccttcc agaccagcag cctgagcctc
     5821 taaaactacg aggtcgccga cgcaactctc atcgaatcgc ccaccattgt cgatcaccaa
     5881 tacgtcgccg ggtgcagccc cgtcgatggc ctccaggaag atatcgacgc tgccgacatg
     5941 tcgggcagga gatgcacgcc cagctagacg gctaccaggc actacagctc gcagaagcgc
     6001 aggcgcacaa cgcaccggaa tttgagcgcg aatgcatgca tccgccagat gggcagtggt
     6061 cagcgtcgca aaccgctgcc gaagctctag gtgatccata ccagctatct cctcctgcgc
     6121 gcacctgttc aacgacaccg gccagtacct ctactacggc cgggtggccg gctgcctgat
     6181 caccggcaac gagggcggcg tcaaacgctg cgcgatgaac gtgctctaca acctgcagca
     6241 ccccgggtta caccatccag ccacaggccg acgcgggtgg atcagcgaag ccaggccggg
     6301 tccgtcctcc tggatgccgc ctcgggcgga ccggaaaacg acttcaccaa ccggaacaca
     6361 aggttcatat caagggcgaa cataagattc cctcatccga ccgaatctag atctggaatc
     6421 ccgcagatga gtcaagagtt cgctcggttg gtgtatcgtc tgatctgata tcgcgtcagc
     6481 ttcgtacccg gtgtcgtcat ggatggcggc ccaggatgtc agagtcgggt tgtagcgtga
     6541 tcgcatgtcc agccagcagg cgattccgga ggatctcgcg gagatcccgc cgggtccccg
     6601 gttgtctgct gcattgtcgg gtattgatct ggcacggttg tcgggtttcg actgcgtgca
     6661 tgtgctcaag gctcgatatc ggcagctcaa tcatgaccgg
//
LOCUS       DASVXZ010000637         1793 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_519474, whole genome shotgun sequence.
ACCESSION   DASVXZ010000637 DASVXZ010000000
VERSION     DASVXZ010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519474"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1793
                     /locus_tag="VF788_13325"
     CDS             <1..>1793
                     /locus_tag="VF788_13325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8935142.1"
                     /translation="AQVQTYSELPTGSALFDSMFVFENYPFDAEPASHGGLHVQDSQT
                     REITNFPLTVQAALRERLALNLAYDPQLFDATTIERMAEHLLVLLGGIVVDPDRPVGE
                     LPLLTEAQRHQLLVRWNDTRRAVPSAALAELFQARASLTPDAVALVCGPVSVSYAELE
                     QRANRLAHWLIARGVGPERLVAVALPRSVDLVVALLAVAKAGGGYLPIDPDYPGARVG
                     FMLTDAAPVLALSCAAAAAQLPQVPGMDVVLVDDPLLGSELAELPERVPTDADRLSVL
                     ALSHPAYVIYTSGSTGRPKAVVVTHAGLSSFVAAEIEHYQLSPGDRVLAMSSPSFDAS
                     ILELGISLLAGAVWVLPQSSDPLAGESLVAILERERISHALIPPAALATIPAEIAKSG
                     LPAWRTVIVGGDVCGAELVDRWAPNRRMINSYGPTEATVVASWSAPLVPRAGRPPIGS
                     PIPNTRLYVLDGWLRPVPVGVSGELYIAGIGLARGYLHRPGLTATRFVANPFGAPGER
                     MYRSGDLVRWSPDGELEYLGRADEQVKIRGFRIEPGEAESALSAHAAVREAAVVVRED
                     QPGDRRLVAYVVGEVEAEALREHLRRTLPEY"
BASE COUNT          257 a          540 c          673 g          323 t
ORIGIN      
        1 gcgcaggtcc agacctacag cgagctacct accggtagcg cgttgttcga cagcatgttc
       61 gtcttcgaga actacccctt cgacgccgaa ccggccagcc acggcggcct gcacgtgcag
      121 gacagccaga cccgggagat caccaacttc ccgttgaccg tgcaagctgc gctccgcgag
      181 cggctcgctc tgaaccttgc ctacgaccca caactgttcg acgccaccac tatcgagcgg
      241 atggccgaac acttgctggt gttactgggc gggatcgtgg ttgatccgga tcggccggtc
      301 ggtgagttgc cgttgctgac cgaggcgcag cggcatcagc tgctcgtgcg gtggaacgac
      361 actcgtcgcg ccgtgccgag cgccgcgctg gcggagttgt tccaagcccg ggccagcctc
      421 acgccggatg cggtggcact ggtgtgtgga ccggtcagcg tgtcgtatgc ggagttggag
      481 caacgagcca accggttggc gcactggttg atcgctcgag gagtgggtcc ggagcggttg
      541 gtggcggtcg cgctgccgcg gtcggtggat ctggtggtgg cgttgctggc ggtggccaag
      601 gccggtggcg gttacctgcc catcgacccg gactaccccg gggcccgggt cggcttcatg
      661 ctgaccgacg ccgccccggt cctggcgttg agctgtgctg cggcggccgc gcagttgccc
      721 caggtgcccg ggatggacgt agtgctcgtt gatgatccgc tcctgggcag cgaactggct
      781 gagttgccgg aacgggtccc tacggatgca gaccggctga gcgtgttggc cctgtctcat
      841 ccggcgtacg tcatctacac ctcggggtcg accgggcgac ctaaggcggt ggtggtcacc
      901 catgcggggt tgagcagttt cgtcgccgcg gagatcgagc attaccagct cagcccgggt
      961 gatcgggtgc tggcgatgtc ttcgccgagt tttgacgcct cgatcctgga gttgggtatc
     1021 tccttgctgg ccggagcggt gtgggtgctg ccgcagagct ccgacccgtt ggccggggag
     1081 agcttggtag caatcttgga gcgggagcgg atcagtcacg cattgatccc gcccgccgca
     1141 ttggccacga tcccggccga gatcgccaag tctgggttgc cggcatggcg cacggtgatc
     1201 gtgggtgggg atgtgtgcgg tgcggagttg gtggaccggt gggcgccgaa ccgccgaatg
     1261 atcaactcgt atgggcccac agaggccacc gtggtggcga gttggagcgc accactggtc
     1321 ccgagggcgg ggcgccctcc gatcggatcg cccatcccca acacccgcct gtatgtgctg
     1381 gatgggtggc tgcgaccggt cccggtcggg gtgagtgggg agttgtatat cgcagggatc
     1441 gggttggccc gcggttacct gcaccgcccc gggctgaccg cgacccgctt tgtggcaaac
     1501 ccattcggtg caccgggtga gcgaatgtac cgcagcgggg acctggtgcg ctggagcccg
     1561 gatggggagt tggagtacct gggccgggct gatgagcagg tcaagatccg cgggttccgg
     1621 atcgagccgg gagaggcgga gagcgcgctc tccgcgcatg cggcggtgcg cgaggccgcc
     1681 gtcgtggtcc gcgaggacca gcctggcgac cggcggctgg tggcgtacgt ggtgggagag
     1741 gtggaggcgg aggcgctgcg cgaacacctg cggcgcaccc tgccggagta cat
//
LOCUS       DASVXZ010000638         4852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_71703, whole genome shotgun sequence.
ACCESSION   DASVXZ010000638 DASVXZ010000000
VERSION     DASVXZ010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71703"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VF788_13330"
     CDS             <1..180
                     /locus_tag="VF788_13330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEX8935143.1"
                     /translation="HRDYAAALVLLRTAERVAPEDIQHRPDAHAILHTVAKCGRRTVA
                     AEATQLASRVGLLLN"
     gene            952..1302
                     /locus_tag="VF788_13335"
     CDS             952..1302
                     /locus_tag="VF788_13335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935144.1"
                     /translation="MDREVRKLSIKKGRTEEPLFQKAPWLSSGVPRRVFVKGMQGVDV
                     TLMVTVVQDSVWLSISPPFTWEAIMESGKVDELVHVLELARDEAAKTPIAPNDSSSHT
                     GKASVRAITGSSES"
     gene            complement(1472..2263)
                     /locus_tag="VF788_13340"
     CDS             complement(1472..2263)
                     /locus_tag="VF788_13340"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEX8935145.1"
                     /translation="MTAGLLPTIGNGNWRPYSVVIMVIVLALSTFVSTLLGGLFALRN
                     KDRLHLVLGFTAGVILGVVSFDVLPEIVRLSRSTGTDFGIPMIALVVGFLTFHVVEKS
                     ILIHDTHESEYADHSHPQVGVVSALALSGHSLADGIAIGLAFQVNSSAGLAVALAVIG
                     HDFADGINTMALMLAHGNSRKRSLPLLLLDAIAPLVGAASTLFFTLPDTGLLLYLGAF
                     AGFLLYIGASDILPEAHANHPSRLTLAMTIFGAAVMWVLIRVISA"
     gene            2307..3125
                     /locus_tag="VF788_13345"
     CDS             2307..3125
                     /locus_tag="VF788_13345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935146.1"
                     /translation="MWNARKGLVALAAIVVLVVATVVAWPFFHTLGRTPGCTVTAAAD
                     ATSGVPVAFPLSGEQAQNAATIAAIGMRLGMPDHAVTVALATALQESGLRNVPVGDRD
                     SAGLFQQRPSQGWGTREQVLDPIYASTAFYQHLRALPEWTQLSVTDAAQLVQRSAAPQ
                     AYAQWEPRARAAAAALTGEEPEALSCLGLAISAPSADLVSTALAELGTAVLSGAHPIA
                     RGWSISSWLVAHASGLAVDRVSFDGRTWTMDSGTWSQTGPADGVLSLHQARSAA"
     gene            3125..3631
                     /locus_tag="VF788_13350"
     CDS             3125..3631
                     /locus_tag="VF788_13350"
                     /inference="COORDINATES: protein motif:HMM:NF013328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEX8935147.1"
                     /translation="MPEGDTVYLAAKRMAAALSGQCLTRGELRHPRLAEHDLSGLTVL
                     SVHSVGKHLFTRFDNGRSLHTHFRMDGSWHLYRPGQRWRRPGHQARAVLTTQKRVAVG
                     FLLHDMALVATQDEHRLVGHLGPDLLSPDWDEQAATIAAQRLREHPDVEVGIALLDQR
                     IMTGVKVQ"
     gene            3654..>4852
                     /locus_tag="VF788_13355"
     CDS             3654..>4852
                     /locus_tag="VF788_13355"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEX8935148.1"
                     /translation="MVALILDIYARVSRLGDDRQRSTEGQVEDCQARIVERGAQVGEV
                     HIDSGRSAWNPRVRRPDWERVMSRLEAGATGGVVVFDMARFSRRPIEGERLILAAERG
                     LLVLDSEGEYDLTTASGRKAFRDQLNAAAYESDRLSTRVKRGKRVKATRGEPNHSRRP
                     FGFEQDGITVRVPESLVLREMVARVLGGESIDHIVRDLNQRGLTTSTGDQWSRTTFKQ
                     LLLRARNVGHVVHHGVVVGHLPGEPILDNETWERLNTLFASRRRGRPNSDVYLCSGIV
                     CCGRCGHRLTGRPMVALKPYPDGEVRRQYWCQPRALRGGCGRITVDQRELDRHVGALV
                     VRILSDPRHAEAVEAAAKATEDKRRPLLAELSECEHLADELSGRLGRREITLKRYDVV
                     IVPLDRR"
BASE COUNT          917 a         1500 c         1572 g          863 t
ORIGIN      
        1 catcgtgact atgccgccgc cttagtcctt ttgcgtaccg ctgaacgcgt ggcccccgaa
       61 gacatacagc accgaccaga cgcccatgcc atcctgcaca cagtggccaa atgtggccgc
      121 cgcacagtgg ccgctgaggc gacgcaactg gcgagccgcg tagggcttct gctgaattaa
      181 agaaccgaac cccgagacag ccctgactgt gagttcggct tagagcttcg tagctgcttt
      241 aacgtccctg cctggcccca gggccgggct gaacgctgag ctggcgcgtc cctctgtgga
      301 cggctccccc gctccgtcag tccagcgttc cccggtcttg ggtgccatcc aaacgacgaa
      361 gccaaacaga cgggttgagg cgagtgcact acgacgacga ccgtgcaggt ccggacaccg
      421 aaaaccagca ctacggtaac gacctgagtg agcacctgcg cgacaccagg cgcagcatcc
      481 ggcctggtat cgccgtgccg cacacggtgc ttttgactga gctggataac gggagcctga
      541 tccttcagga gcggccaaac gggccgcgtg cgtatcgccg cgtgcgtatc tcagcccagc
      601 caaagccata ccactgcggc gagagctagt ggcggccttc cggcgtaccg agatggggcc
      661 tcgtgacgac ctggacgata tccggtgatc ggcgaagatc accggttact agccgagtca
      721 taccgactaa acgcaggttc ggccgtatta gctttgcgcg tcatggatgg cgctgccagc
      781 gctcctgagc gaatggactg tgcgcagcgt ctatcccgtg ctagagagca gttgcagcga
      841 cgagccgctg ctatgaatgg ggtcgtcgtc gaggggagag gtcctgatcg atggcgctgt
      901 gactgttccc attgcataca cggagaccgt tgggaggcat gaggggggat tatggaccgt
      961 gaagtgcgaa agctttccat aaagaagggt cggactgaag agccactttt ccagaaagca
     1021 ccatggctca gttcaggcgt gccccgccga gttttcgtca aagggatgca gggagtagat
     1081 gtaaccctga tggtgaccgt ggtgcaagac tcggtgtggc tgtcgatctc accaccgttt
     1141 acctgggaag ccatcatgga gtcgggcaag gtggacgaac tggtgcatgt gcttgagctg
     1201 gcgagagacg aagccgcaaa gacgccaata gcacccaatg acagttcatc tcatacgggt
     1261 aaggcgtctg tccgagccat tacaggcagc tctgaaagct gagtcgctat ttcgatacat
     1321 gcccaatatc tctgcgcgga gaaggtcagc cgtatccccc atctccagca gtagcgcatc
     1381 ccgactaccc agcacgtctt gcgcttcagg cagcaccgga tgcgatcctt gtaattcttc
     1441 aagcctcgag gagcgcgcgc tgggctgggt gtcatgcgct gatgacccgg attagaaccc
     1501 acatcaccgc ggcaccgaaa atggtcatgg ccagggtcag ccgggatggg tgattggcgt
     1561 gcgcttcggg aaggatgtcg cttgcaccga tgtatagcag gaagcctgcg aacgcgccga
     1621 gatatagcag cagcccggta tctggcaggg taaaaaacag cgtgctcgcc gcgccgacga
     1681 gcggggcaat ggcgtcgagc agcaacaggg gcagtgaccg cttgcggctg tttccgtgcg
     1741 ccagcatgag ggccatcgta ttgatcccgt cggcgaaatc gtggccgatg accgccaggg
     1801 cgacggccag gcccgcgctg ctgttgacct ggaacgcgag cccgatcgcg atcccgtcgg
     1861 cgagactgtg gccagacagc gccagtgcac tgacgactcc gacttgcggg tgtgagtggt
     1921 cggcgtactc actctcgtgc gtgtcatgga tcaggatcga cttctcgacc acatggaagg
     1981 tcaaaaagcc gacgaccagc gcgatcattg gtatgccgaa gtcggtgccg gtgctgcgtg
     2041 acaggcgcac tatctcgggt agcacgtcga agctgacgac gccgagaatg acacccgccg
     2101 tgaaacccag caccaggtgc agccggtcct tgttccgcag cgcgaacagc ccgccgagca
     2161 acgtcgagac gaacgtactc agtgccagca cgatgaccat gatcaccaca ctgtacgggc
     2221 gccaatttcc attcccaatg gtcggcagca gcccggctgt caccgtgcca cccggctcat
     2281 acactggtgt agaagggaga cagccagtgt ggaacgcccg caaaggcctg gtcgcgctgg
     2341 ctgcgattgt ggtcctggtc gtcgcgacgg tggtcgcttg gccgtttttc cacaccctcg
     2401 ggcgaacgcc gggctgcacc gtcactgccg ccgcggatgc gacctccggt gtccctgtgg
     2461 cgttccccct atcaggtgag caggctcaga acgctgcgac tatcgccgcg atcggcatgc
     2521 ggctgggcat gccagaccac gctgtcaccg tcgccctagc gacggcactg caggaatccg
     2581 gcctgcgcaa cgtcccggtg ggtgatcggg actcggcagg actgttccag caacgcccga
     2641 gccaaggttg ggggacgcgg gagcaggtcc tcgatcccat ctacgcatcc accgccttct
     2701 accaacacct tcgcgcgcta cccgagtgga ctcaactgag cgtcaccgac gccgcccagc
     2761 tcgtccagcg atccgctgct ccgcaggcct acgcgcagtg ggaaccgcgg gcccgagccg
     2821 ctgcggccgc cctcaccggt gaggaacccg aggcactgag ctgcctcggc ctggcgatca
     2881 gcgcgccgag cgcagacctg gtgagcaccg cactcgccga gctcggcacc gccgttctca
     2941 gcggagcgca ccccatcgcc cgcggctggt cgatcagcag ctggctcgtc gcccacgcgt
     3001 ccggcctcgc tgtcgaccgg gtgagcttcg acgggcgcac ctggaccatg gactcaggca
     3061 cctggtctca gaccgggccg gctgacggcg tcttgtccct acaccaagct cggagcgctg
     3121 cctgatgccc gaaggcgaca ccgtctactt ggccgccaag cggatggccg ccgcactgag
     3181 cgggcagtgc ctcacccggg gggaactgcg ccatccccgg ctcgccgagc atgatctctc
     3241 cggactcacc gtgctgagcg tgcacagcgt cggcaagcat ctcttcaccc gtttcgacaa
     3301 cgggcgaagc ctgcacacac atttccggat ggacggctct tggcaccttt atcgacccgg
     3361 gcagcgttgg cgacggccag gtcatcaagc tcgggcagtg ctgactacgc aaaaacgagt
     3421 agcagtaggt ttcctcctgc acgacatggc gcttgtggcc actcaggacg aacaccggct
     3481 cgtcgggcac ctgggtcccg atctgctcag ccccgactgg gacgagcaag ctgccacgat
     3541 cgcggcgcaa cgactacgcg aacatcccga cgtcgaagtc ggcatcgccc tgctcgacca
     3601 acggataatg accggggtca aggtacaata agtacctcca agcgagggga gccatggtgg
     3661 cgctcatcct ggacatctac gcgcgtgtgt cgcggcttgg tgatgatcgg caacgctcga
     3721 ccgaaggtca ggttgaggac tgtcaggcca ggatcgtgga gcgtggggcg caagtcggcg
     3781 aggtgcacat cgacagtggg cgctcggcgt ggaatccgcg cgtgaggcga cctgactggg
     3841 aacgggtcat gtctcggctg gaagctggcg cgacgggtgg tgtggttgta ttcgacatgg
     3901 ctcggttctc tcgtcggcct atcgagggcg agcgtctgat tctcgccgcc gagcggggcc
     3961 tactggtgct ggacagcgag ggtgagtacg acctgacgac ggccagtggc cgcaaggcgt
     4021 tccgtgatca gctcaatgcc gccgcgtatg agtccgatcg gctgtccact cgggtcaaac
     4081 ggggtaagag ggtcaaggcg acgcgcggag agcctaacca ctcgcggcgg ccgttcgggt
     4141 tcgagcagga cggcatcacg gtccgagtgc cagagtccct cgtgcttcgc gagatggtcg
     4201 cgcgtgtgct gggtggggag agcatagatc acatcgttcg tgatcttaac cagcgaggcc
     4261 taacgacgtc gactggtgac cagtggtcgc gtacgacgtt caaacaacta ctcttgaggg
     4321 cacgcaatgt tggtcacgtc gtccaccacg gcgtagtggt gggtcatctg cccggcgagc
     4381 cgattctcga caacgagact tgggaacggc tcaatacgct cttcgcctcg cgtcgccgtg
     4441 gccgcccaaa ctctgatgtc tacctgtgct cgggcattgt gtgctgcggg cgctgtggac
     4501 atcggcttac ggggcggccg atggtggcac tcaagccgta cccggacggt gaggttcgtc
     4561 ggcagtattg gtgtcaacca cgcgcgctcc gtggcgggtg cggtcgtatc actgttgatc
     4621 aacgagaact ggaccggcac gtcggggcgc tggtggtgag gattctgtct gaccctcggc
     4681 atgccgaagc tgtcgaggct gccgccaagg ccacggagga taaaaggcgg ccgctgctcg
     4741 ccgagttgag tgagtgcgag caccttgccg acgagttgtc cgggcggctg ggtcggcgag
     4801 agatcacgct caagcgttat gacgtcgtca ttgtgccctt ggacaggcgc at
//
LOCUS       DASVXZ010000639         6015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_698750, whole genome shotgun sequence.
ACCESSION   DASVXZ010000639 DASVXZ010000000
VERSION     DASVXZ010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6015
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_698750"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VF788_13360"
     CDS             <1..462
                     /locus_tag="VF788_13360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935149.1"
                     /translation="PPVLSGPVRVTKLTVYDPSGLGSPDHQRDVGKLVDGNPNTGWST
                     DSYFKQFPAYKKGLGVMLSFEAPIMASSLTVVSPSAGTVLEIRSATSPNARLDQTTLV
                     GTATLRSGSNQIPLRAAPPARYLLVWITSLSGEQGHHQSKLADLQIQQRAT"
     gene            complement(493..972)
                     /locus_tag="VF788_13365"
     CDS             complement(493..972)
                     /locus_tag="VF788_13365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8935150.1"
                     /translation="MAVRRVQEPDVDAVVALVHELAGYERASEQCRLTAPQLRAALFD
                     AQPAVFGHVAEAGGEVAGVALWFLNFSTWDGVHGIYLEDLFVRPEHRGAGLGRELLAA
                     LAAECLCRGYTRLQWSVLDWNEPAIGFYRCLGALPMHEWTAFRIDGPALVTLAQGKR"
     gene            1061..1729
                     /locus_tag="VF788_13370"
     CDS             1061..1729
                     /locus_tag="VF788_13370"
                     /inference="COORDINATES: protein motif:HMM:NF021576.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HEX8935151.1"
                     /translation="MASARVRAPAVWTALVFLAVIVLVFAGMRVAVDWPNVAAGTVPP
                     EDSPDHSYALHPILAYAHILTGVVYLVGAPFQLSRSFRERHFTVHRRMGRVVLPAGIA
                     AGIFAIVFGVMFPFDGLLEASATVVFGVYFVAALITAFLAIKRGDVSHHRRWMIRAFA
                     IGLAVGTIRVWIGVFQAFGLMSLQASFGVAFWLSFLLHAVAAEIYLSKRPGARGAAEP
                     AFVT"
     gene            1775..2749
                     /gene="trxB"
                     /locus_tag="VF788_13375"
     CDS             1775..2749
                     /gene="trxB"
                     /locus_tag="VF788_13375"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005154470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEX8935152.1"
                     /translation="MSEQIRDVIIIGSGPAGYTAGIYTARAQLEPLQFEGHQYGGALM
                     TTTEVENYPGFRDGIMGPDLMEQFRAQAERFGTELQSKDVTAVELAGDVKRVMVEQTT
                     YLARSVILAMGAQARYLNVPGEQELLGRGVSSCATCDGFFFRDQDIAVVGGGDSAMEE
                     ATFLTRFARSVTVVHRRDEFRASKIMLERARNDEKINWRTGVTVEKVVGDGGVSGLEL
                     SDGSTLDVSGMFVAIGHYPRSELVRGQVDTDADGYVKVSAPTTQTSVAGVFAAGDLVD
                     RIYRQAVTAAGTGCSAAIDAERWLAEHAVDERAQVAAEFVGGGYGTTS"
     gene            2793..3122
                     /gene="trxA"
                     /locus_tag="VF788_13380"
     CDS             2793..3122
                     /gene="trxA"
                     /locus_tag="VF788_13380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEX8935153.1"
                     /translation="MADKSTVIVTDQSFADEVLGSDKPVLVDFWASWCGPCKMVAPVL
                     EEIASEHGEITVAKMDIDANPSTPRNYRIMSIPTMIVFSGGEPVKQIVGAKPKAALLE
                     DLADYLG"
     gene            3304..4458
                     /locus_tag="VF788_13385"
     CDS             3304..4458
                     /locus_tag="VF788_13385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009157263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEX8935154.1"
                     /translation="MQLLRRGDTGPAVAQLRAMLTSQGLLPAPSGSKTGAAEGFDLAV
                     EHAVRAFQQRRGLITDGIVGLATYQALCDARLDLGCRILSYLVTQPLRGDDVCTLQER
                     LLELGYDAYRADGIFGVHTEMALRSFQRDYGLLVDGICGPATLRALRQLQPKVRGGRP
                     VLLREQELLRRSGPALRGKRIIIDPCLGGAHRGTMVGGAVEAELMWDLAQRLSGRMAA
                     TGMETLLSRGPDTCPTEAERAAFANGTSADLVLSLHTDSHHTALAHGVATFHFGTGNG
                     VTSTVGEALAQFIQRELTARTGMLDCRTHPKTWELLRLTRMPAVRIELGYLTNPGDRR
                     TLLDPALRDVIAEGVVVAVKRLYLLGENDQPTGTFTFADLLKGEVTQAAL"
     gene            complement(5004..5837)
                     /locus_tag="VF788_13390"
     CDS             complement(5004..5837)
                     /locus_tag="VF788_13390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935155.1"
                     /translation="MRPAQPGPRSRLGRQDPDPLNRPGSAGFATASTSGEDPRPHLPH
                     IWRAGALAFPGRTQNPPADRSAQPVGESVPDASAGAADRALIRPPLAGADLYDWMALR
                     RVSSGGIARMGDHWLEHGRRIPGYIADALAVLCDNDVVSLAELDVWSMQRAALTDTGT
                     VRYQQLNRLQQTVRQLPAAESAQGVTWLADHRYARNVVQSVWDTLDQLEQSDHHPGAI
                     AALRRVLARHQPTPAGRCRACRRWRWCRSRFPCIEWHQVHTELRYQVGCRIRADGAQR
                     F"
BASE COUNT         1001 a         2009 c         1972 g         1033 t
ORIGIN      
        1 ccgccggtgc tctccgggcc ggtgcgggtg acgaagttga ccgtttatga cccctccggg
       61 ttgggcagcc cggatcacca gcgcgacgtc ggcaagctgg tggacggcaa cccgaacacc
      121 ggctggtcca ccgactcgta cttcaagcag tttcccgcct acaagaaggg gctcggcgtg
      181 atgctgagct tcgaggcgcc catcatggcg agctctttga cggtggtgtc gccgagcgcg
      241 ggcactgttc tggagattcg ctccgcgaca tcgccgaacg cgcggttgga ccaaaccact
      301 ctggtcggca ccgcgacgct gcgatccggc agcaaccaga tcccgctgcg cgctgcgcca
      361 ccggcccgat atctactagt gtggatcacc agcctgagcg gtgagcaagg ccaccaccag
      421 tccaagctcg ccgatctcca gatccagcaa cgagccacct gagttaccgg acgcccatcg
      481 ggcgctaccc gatcatcgct tcccctgagc gagagtgacc aaggcggggc cgtcgatccg
      541 gaatgcggtc cactcgtgca tcgggagcgc gcccagacag cggtagaagc cgatcgccgg
      601 ttcgttccag tccagcaccg accattgcag ccgggtataa ccgcggcaca gacattcggc
      661 ggccagcgca gcgagcaact cccggcccag ccccgctccc cggtgctcgg gccgcacgaa
      721 cagatcctcc aggtaaatcc cgtgcacgcc gtcccaggtg gagaagttca gaaaccacag
      781 cgctactccg gcaacctccc cgcccgcctc ggcgacgtgt ccgaacaccg cgggctgcgc
      841 atcgaacagc gccgcgcgca gctgcggggc ggtcagccgg cactgctcgc tcgcccgctc
      901 atagcccgcg agctcgtgca ccagcgcgac caccgcatcg acgtcgggct cctgtacccg
      961 tcggacagcc atggtcgaca ggctgccacg gaactgcgac agcattagcc ccattggtaa
     1021 tccctggcct catcttctag cgcgacgtac gctccgcggc gtggcgtcag ctcgggtgcg
     1081 tgccccagcc gtgtggacgg cgctggtctt cttagcggtg atcgttttgg tgttcgctgg
     1141 gatgcgggtc gccgtcgact ggccgaatgt cgccgccggg acggtgccac ccgaggattc
     1201 gcccgaccac agttacgcgc tgcacccgat cctggcctac gcgcacatcc tgaccggcgt
     1261 cgtctacctg gtgggcgcac cgttccaact ctcccgcagc ttccgggagc ggcacttcac
     1321 cgtgcaccgg aggatgggcc gagtcgtact accagccggc atcgcggcgg gaatcttcgc
     1381 gatcgtcttc ggggtcatgt tccccttcga cggcctcctg gaggcgagcg ccacggtggt
     1441 gttcggtgtt tacttcgtcg cggcgctgat cactgcgttt ctggccatca agcgcggtga
     1501 cgtgagccac catcgccggt ggatgatccg ggccttcgcc atcgggctgg cggtcggcac
     1561 gatccgggtc tggatcgggg tgttccaggc attcggtttg atgtcgttgc aggccagctt
     1621 cggtgtcgcg ttctggctgt cgttcctgct ccacgcggtg gcggccgaga tttacctgtc
     1681 caagcgaccc ggtgcccgcg gcgccgccga acccgcattc gtgacgtgat accggcgcgg
     1741 gaacatcgat ccgtaggatc gtgttgtggc caatgtgagt gagcagatcc gggacgtcat
     1801 catcatcggc tcgggtccag ccggttacac cgcagggatc tacaccgcgc gggcccaatt
     1861 ggagccactg cagttcgagg gtcaccagta cggcggcgcc ctgatgacca cgaccgaggt
     1921 ggagaactac cccggattcc gcgacgggat catgggtccg gacttgatgg agcagttccg
     1981 cgcacaagcc gaacgcttcg gcaccgagct gcagtccaag gacgtgacgg cggtcgagct
     2041 ggccggtgac gtcaagcggg tcatggtcga gcagaccacc tacctggccc ggtcggtgat
     2101 cctcgcgatg ggcgcgcagg cccggtacct caacgttccc ggcgagcagg agctgctcgg
     2161 ccgcggcgtg agctcgtgcg ccacctgcga cgggttcttc ttccgggacc aggacatcgc
     2221 cgtcgtcggc ggcggcgact cggcaatgga ggaggccacc ttcctcaccc gcttcgcccg
     2281 gtcggtgacc gtggtgcacc gacgcgacga attccgcgcc tcgaagatca tgctcgaacg
     2341 tgcccggaac gacgaaaaga tcaattggcg caccggggtg acggtggaga aggtggtcgg
     2401 cgacggcggc gtcagcggtt tggaactatc ggatggctcg accctggatg tcagcgggat
     2461 gttcgtggcc atcgggcact atccacgcag cgagctggtg cggggtcagg tcgacacaga
     2521 cgccgatggc tacgtgaaag tgtccgcgcc caccacacaa accagcgtgg cgggtgtgtt
     2581 cgctgccggc gacctggtcg accggatcta ccggcaggct gtcaccgccg ccggaaccgg
     2641 gtgttcggcc gcgatcgacg cggaacgctg gctggccgag catgccgtcg atgagcgcgc
     2701 gcaggtggcc gccgagttcg tcggcggcgg gtacggcacc acgtcctgat tatccagatc
     2761 gtcaccagaa agatccgcac acaggagatg acatggcaga caagtcgacc gtgatcgtga
     2821 ccgaccagtc gttcgccgac gaggtgctcg gcagcgacaa gccggtgctg gtggacttct
     2881 gggcgtcctg gtgcggcccc tgcaagatgg tcgcaccagt actcgaagag atcgcctcag
     2941 agcacggtga gatcaccgtc gcgaagatgg acatcgacgc caatcccagc acgccacgca
     3001 actaccggat catgtccatt ccgacgatga tcgtgttctc gggtggcgag ccggtgaagc
     3061 agatcgtcgg cgccaagccg aaggccgcgc tgctcgagga tctcgccgat tacctgggct
     3121 gattgaggcg ggctcgggta actgcccacg cgcgttcact ggctgcgggc aaccgattac
     3181 cctggggcgc gtcctgcact gggcggggcg gggcgagcca gctgcccgcc caggcatcta
     3241 ccgacaggcc tcgtgctcgg ccgctgcggt ccgagtcccg gcgccgatga gaagtgaggc
     3301 tgaatgcagt tgctgcgccg cggcgacacc ggaccggcgg tggcgcagct acgagcgatg
     3361 ctgacctcgc aaggtttgct cccagcacca tcgggttcca agaccggggc tgctgagggc
     3421 ttcgacctcg ccgtcgaaca cgcggtccgc gcattccagc agcgccgcgg cctgatcacc
     3481 gatggcattg tgggcctggc cacctaccag gcgctgtgcg acgcgcgtct ggacctcggc
     3541 tgccgaattc tcagttacct cgtcacccaa ccattgcgcg gcgacgacgt atgcacactg
     3601 caggaacgct tgctcgaact gggctacgac gcctaccgcg cagacgggat cttcggtgtg
     3661 cacaccgaga tggcattgcg cagcttccaa cgtgactacg gcctgctggt ggatgggatc
     3721 tgcggtccgg ccaccctgcg tgcgctacgc caactgcaac ccaaggtgcg cggtggcagg
     3781 ccggtgctgc tccgcgagca ggaacttctc cgccggtccg ggccggcact gcgcggcaag
     3841 cggatcatca tcgatccctg cctcggcggt gcccaccggg gcaccatggt aggcggcgcc
     3901 gtcgaggcgg agctgatgtg ggacctggcc cagcggcttt cgggccggat ggcggccacc
     3961 gggatggaga cgctgctctc gcgcggcccg gacacctgtc ccaccgaggc cgagcgagcc
     4021 gccttcgcca acggcaccag tgccgatctg gtgctctccc tgcacaccga cagccatcac
     4081 accgccctgg cgcacggcgt ggcgacattc cacttcggca ccggcaacgg cgtgacctcc
     4141 actgtcggcg aggcgctcgc ccagttcatc cagcgcgagc tgacggctcg tacggggatg
     4201 ctggactgcc gtacccatcc gaagacctgg gagctgctgc ggttgacccg gatgcccgcg
     4261 gtccgcatcg aactgggcta cctcaccaac cccggggatc gccgcacact tctggacccg
     4321 gcgctgcgcg atgtcatcgc cgagggagtg gtcgtcgccg tcaaacggct ctacctgctg
     4381 ggagaaaacg atcagcccac cggcaccttc accttcgccg atctgctgaa aggcgaagtg
     4441 acccaagccg ccctctgatt ggtctcgtcg atgccttggt gagttccttt gcgccgcact
     4501 gctaacccct attagacagt ctccggtagg taaaggttca cgcgctgcaa cgctcgctaa
     4561 cgttgtgctc tcgtggggct tgacgtggct ggatggtcgg ccagcgaccg gcgcgggtgc
     4621 cgccgtccca ccacccaccg ctgcttgacg ccgggcgagc gttccagcac ctgttccacg
     4681 agttctattt cttagcgcat gcaaatttct agccatgccc gtaactctgg cttgcctgta
     4741 gcgaaacata aatatcagga cttatggaaa tagggagggg ttctgatgtt agtaagtgat
     4801 gtgttcgcca gcgccttagg tcacctcggt ggccgtgagg actatgacaa cgaccacgat
     4861 ggccgtcacc ggcatcatca ccaccgccac caccgccact ggtgggacgg gcatcgctgg
     4921 tgtgatgagt ggtcggactg actaggtaac acacgagcgg ggccctgctg gggccccgtt
     4981 tcgtatttag ctagctcacc gcctcagaaa cgctgtgctc catccgcgcg gatccggcat
     5041 cccacctgat agcgcaactc cgtgtggacc tggtgccact cgatgcaggg aaaccgactg
     5101 cggcaccatc tccagcgacg gcaggcgcgg catcgacccg ctggggtggg ctgatggcgg
     5161 gccaagaccc gccgcagcgc ggcgatggcg cccggatgat gatcggactg ttcgagttga
     5221 tcgagcgtgt cccacaccga ctggaccacg ttccgggcgt accggtgatc agcaagccag
     5281 gtcactcctt gagcggattc ggcagcgggt agctgccgga cggtctgctg tagccggttc
     5341 agctgttgat aacggacggt cccggtgtcc gtcagcgccg cccgttgcat gctccacacg
     5401 tccagctcgg ccagcgacac cacgtcgttg tcgcacaaca cagcgagcgc atcggcgatg
     5461 tagcccggta tccgacgccc gtgctccaac cagtgatcac ccatcctcgc gataccgccg
     5521 ctgctgacgc gtcgcagtgc catccagtcg tacaggtcag ctccggccag cggtggccgg
     5581 atcagggcgc gatcggccgc accggcgctg gcatcgggca cgctctcgcc gaccggctgt
     5641 gctgaccggt ccgcgggcgg gttctgggtg cgaccaggaa aagcgagggc ccccgcccgc
     5701 cagatgtggg ggaggtgcgg gcgggggtcc tcgccgctgg tggacgccgt ggcgaaaccg
     5761 gcggaaccgg gtctgttcag cgggtccgga tcctgccttc cgaggcgtga tcgaggtcct
     5821 ggctgcgctg gcctcatctg gatcccctct cgctcgccca tggaatggcc ggaccggcga
     5881 cttggcgtcg gggcgtcgcc ggttcggcca tgacccttcg cacgcggtgg tgatgcggcc
     5941 gtcagggctg ggcgcagtca agcactgcga cacgcggaat gcaagatttc aaatgaatgt
     6001 atcggaacgc ctact
//
LOCUS       DASVXZ010000640         3241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1021680, whole genome shotgun sequence.
ACCESSION   DASVXZ010000640 DASVXZ010000000
VERSION     DASVXZ010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1021680"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            12..128
                     /gene="rrf"
                     /locus_tag="VF788_13395"
     rRNA            12..128
                     /gene="rrf"
                     /locus_tag="VF788_13395"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            490..1101
                     /locus_tag="VF788_13400"
     CDS             490..1101
                     /locus_tag="VF788_13400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005439702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935156.1"
                     /translation="MTLPKGLADLIGGHLVMAARVLEEDPQLALAHTRFARSKAGRVA
                     AVREAAGLAAYFAGEWSEALGELRAARRLGGDAGRLAVLADCERALGRPERALEIARS
                     PEARQLGTDEVIELRIVAAGARRDLGQFDAAVVALQGPELDAPGEEPWRARLRYAYAD
                     NLLAAGREQDAIRWFLSAAEADVEGDTDAAERAVELSERPEVE"
     gene            1098..2111
                     /locus_tag="VF788_13405"
     CDS             1098..2111
                     /locus_tag="VF788_13405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005465440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEX8935157.1"
                     /translation="MTESLDSYDAVLLDLDGTVIRGAEPVPEAPDVINELRQAGRALQ
                     FITNNASRAPDEIARHLADLGVRTVPEEILTSGQAAVELLTTQLPAGAAILVVGSAAL
                     VAEVKSAGLRPVTEASDQPVAVVQGHSPETGWARLAEACLAIRGGALWVACNIDRTLP
                     TERGLLPGNGAMVAALEAATDREPTVAGKPARLLLDTAVRRTGAQRPLVVGDRLDTDI
                     AGARAAGLDSLLVLTGVSDAAGLLAAPPEQRPTHLGADLRVLREPLERARIGLRPGWR
                     VESVDGGLLLGSDGDASDTLDALRTLCAVWWDGHTGPVQVRAGDDKAATALQALTLDE
                     AIR"
     gene            2184..2351
                     /locus_tag="VF788_13410"
     CDS             2184..2351
                     /locus_tag="VF788_13410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935158.1"
                     /translation="MTFQPPSPAVPSRTGITEALAALQGLEELPTADHVVRLRTVHDA
                     LTAALSSIDEV"
     gene            2417..3232
                     /locus_tag="VF788_13415"
     CDS             2417..3232
                     /locus_tag="VF788_13415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017982000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEX8935159.1"
                     /translation="MARRVRLDAELVRRGLARSRDHAVELVAQRRVQVGGVTATKPAT
                     GVDVDTPLLVRVQDNEPNWASRGARKLLGALDGLIAGGPVVTDRRCLDAGASTGGFTD
                     VLLHRGAREVVAVDVGYGQLAWSLRTDQRVRVQDRTNVRTLQPEDIGGTVDLTVADLS
                     FISLRLVLPALVACTSADGDLLPMVKPQFEVGRQRLGAGGVVRDPQLRAQAMLDVLAV
                     AAGLGLCLVGAIASPLPGPSGNVEYFLWLRRGVADPLRPAEELVDAAVRKGPQ"
BASE COUNT          531 a         1000 c         1171 g          539 t
ORIGIN      
        1 tccacacaag ttacggcggc catagcggag gggaaacgcc cggacccatc ccgaacccgg
       61 aagctaagcc ctccagcgcc gatggtactg cacccgccag ggtgtgggag agtaggacac
      121 cgccgaacac aaccacacaa caaaggggcc cccacacccg ggggcccctt agctctgcga
      181 taagtgagag gatctgcgac cgtgtcagcc ggagagaatc cgaccgggga cgcggactgc
      241 aacggtggtg ccgcccggac gcccgcaatg cgcggtcgtg gttcagatca ccccagatct
      301 aatcaaccca gtacgcaacg tcgtgccggc agggaccgga cggcgaatcg aagtgaccga
      361 ccgcaagacg gttctcgtgg gcctgggcaa agccgcgatg gttttgcagc caaccgggac
      421 ttgtcgcgtc cggaactccc tccgaaccta gatctcagcg agttggatca ggaagttcgt
      481 aaagaactgt tgacgctgcc gaaaggcctg gccgatttga ttggcggcca tctggtgatg
      541 gcagcacgcg tgctggagga agatccacag ctagctctgg cacatacccg gtttgcgcgt
      601 agcaaggcgg gtcgggtcgc tgccgtgcga gaggccgcgg ggcttgccgc ctattttgcc
      661 ggtgaatggt cagaggcgct gggggagctg cgggctgccc gccggctggg cggtgatgcc
      721 ggtcgtctgg ctgtgttggc tgactgcgag cgggcgttgg ggcggccgga gcgggccttg
      781 gagattgctc gcagcccaga ggctaggcag ctcggcactg atgaagtgat cgagctgcgg
      841 atcgtggcag ccggggcgcg gcgtgatctc ggccagttcg acgcagcggt ggtcgcattg
      901 caggggccgg agctcgatgc gccgggagag gaaccgtggc gggccaggtt gcgctacgcg
      961 tatgcggata acttgttggc cgctggccgg gagcaggacg cgatccggtg gttcctgtcg
     1021 gccgcggagg ccgatgtgga gggtgacacg gacgccgcgg agcgagccgt cgagctcagc
     1081 gagcgaccgg aagtggagtg accgagtcgc tggacagtta cgacgcggtg ctgctcgacc
     1141 tcgatggcac cgtgatccgt ggagccgaac ctgtgccgga ggctccggat gtgatcaatg
     1201 agcttcgcca ggccggacgg gcgttgcagt tcatcaccaa caacgcctcc cgggcgcctg
     1261 acgaaatagc caggcatctc gctgatttgg gcgtccggac tgtcccggaa gagattctca
     1321 ccagcggtca ggccgcagtt gagttgctga cgacccagct gcctgcaggc gcggcaatcc
     1381 tggtcgttgg ctcagcggcg ttggtcgctg aggtgaaatc agccggcctc aggccggtga
     1441 cggaggcctc cgatcagccc gtcgcagtag tacagggcca ctcgccggag accgggtggg
     1501 cgcggctggc cgaagcgtgc ctggctatcc gcggtggcgc actatgggtc gcgtgcaaca
     1561 tcgaccgtac gttgcccact gaacggggct tactgcccgg caacggtgcg atggtggcag
     1621 cactggaagc cgccactgac cgggagccca ctgtggccgg taagccggcc cgcctgctcc
     1681 tagacacggc cgtgcgtcga actggcgccc agcgaccctt ggtcgtcggt gaccggctgg
     1741 ataccgacat cgccggagca cgggcagcag gactggattc cctgctggtc ttaaccggtg
     1801 tcagcgatgc tgctgggctg cttgccgcgc caccagagca acggcccact cacctcggcg
     1861 ccgacctccg ggtattgcgc gaacccctgg aaagggctcg catcggcctg cgacccggtt
     1921 ggcgggtcga gtcggtggat ggcgggctgc tgctaggcag tgacggggac gccagcgaca
     1981 cccttgacgc gttgcggacg ctctgcgcgg tttggtggga cgggcacacc gggccagtgc
     2041 aggtacgggc gggcgacgac aaggccgcga ccgcattgca ggccttgacg cttgacgagg
     2101 ccattcgtta agggttcgtc agcttggtcg ccgctcggta ggtagcgtta gcggtgaccc
     2161 cacaggccca ggagaccagc tagatgacgt tccagccacc ctcacccgcg gttccctccc
     2221 gtaccggtat taccgaggcg ctcgctgcct tgcaaggcct tgaggaacta cccaccgccg
     2281 atcatgtggt gcgcttgcgc accgtgcacg acgcgctgac cgcggctctt tccagcatcg
     2341 acgaggtttg agtgggttgg tgttcagatg ggcgcccggt tagatggggc actggtagat
     2401 ggggcgcggg gtttagatgg cacgcagagt tcggctggac gcggagctgg tgcggcgcgg
     2461 tctggcccga tctcgtgacc acgcggttga gctcgtcgcc cagcgccgtg ttcaagtcgg
     2521 tggggtaacg gcgaccaagc cggccaccgg agtcgacgta gacaccccgc tgctcgttcg
     2581 ggtacaagac aacgagccga actgggcgtc gcggggtgct cggaagcttc ttggtgcgct
     2641 ggacggtctc atcgccggcg gcccggtcgt cacggaccga cgctgcctgg acgccggcgc
     2701 atccaccggc ggattcaccg atgtgctgct gcatcgcgga gcccgggagg tggttgcggt
     2761 ggacgtcggt tacgggcagc tcgcctggtc actgcgcacc gaccaacgcg tgcgggtcca
     2821 ggaccggacg aacgtgcgga cgctgcaacc cgaggacatc ggaggaaccg tcgatctgac
     2881 cgtcgctgat ctgtcgttca tctcattacg cctggtgctg ccagccctcg tcgcgtgcac
     2941 cagcgcagat ggggatctgc ttccgatggt gaaacctcag ttcgaggtcg ggaggcaacg
     3001 cctaggcgcc ggcggtgtgg ttcgagatcc gcagctgcgt gcccaggcca tgctggatgt
     3061 gctagccgtc gcggccggcc tcgggctctg cctggtgggc gcgatcgcga gcccgctgcc
     3121 ggggccgtcc ggcaacgtcg agtacttcct gtggctgcgg cgcggcgtgg ccgatccgct
     3181 gcgccccgcc gaggaactgg tggacgcggc cgtgcggaag gggccgcaat gagagccacc
     3241 c
//
LOCUS       DASVXZ010000641         2173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_879731, whole genome shotgun sequence.
ACCESSION   DASVXZ010000641 DASVXZ010000000
VERSION     DASVXZ010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_879731"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..537
                     /locus_tag="VF788_13420"
                     /pseudo
     CDS             1..537
                     /locus_tag="VF788_13420"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            609..1776
                     /locus_tag="VF788_13425"
                     /pseudo
     CDS             609..1776
                     /locus_tag="VF788_13425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612020.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          461 a          703 c          613 g          396 t
ORIGIN      
        1 gtcgaccgga cgcgcacgcc gccgcctgcc acgacggtca ccgacgaggt ccgtgacgag
       61 atcttaagcg tcacgctgag tcggccgccg gctgagcggg gtatcaccca ttggtcgagc
      121 cggttgttag cggactggtt gcgccgctcg ggtaccgcgg tctcgcatga ctcgatcagc
      181 cgcttgtggc gtcgattcgg gatccagccg tggcggtgcg agacgtttaa gttctccacc
      241 gacccccagc tcgaagccaa ggtccgtgac gtggtcgggc tctacctcaa cccaccggac
      301 aacgcgatcg tgctctcgat agacgaaaaa tcccagatcc aagccctgga ccggaccgcg
      361 ccgatgctgc cgatgcgccc aggaatcccc gaacgccaga cccatgacta ccgccgccac
      421 ggcaccacca cgctgttcgc cgccctagag gtcgccaccg gcaaggtcac cgacgcctgc
      481 tacccacggc atcgccacca agagttcctc aagttcatca aacaggtcgc caaggcctaa
      541 cctggcgcgc ctcccacatt ccggacaggg aaccttataa ggtccgcttc cgaaatggag
      601 ggggatgaat gctagaacgg cgcaggaaat acacacctga atttaaggat gaagcggcga
      661 agatggtggt cgaaacctct cgtccgatcg ccgagatcgc tcgggagata ggcgtgcacg
      721 agggtaccct ggggaattgg gtaaagaaat accgagttga ccacgccggc gaggagccac
      781 cgctgtcgat cagcgatcgg gcacggctgc gggagctgga aaagaaaacc gtgagctgaa
      841 gatgaaagct gattttttgg gaaaagcggc ggccttcttc gcccaagagt ctcggtgacc
      901 gcgaagttcg agttcatcga cgcgcagaag gcagattttc cggtcgtgaa gatgtgcatg
      961 tgggccgagg tgtccacctc gggatattat gagtggcggg acaggccctc ctccgctacc
     1021 gcgattcgcc gcgctcacct cacgcgactc gtcaaggcaa ttttcgatca ttctgatcaa
     1081 acctatgggt accgtcgcgt gcatgcccag ctcgttcgtc agggcgagca ggtgagtcca
     1141 gagctcgtgc gggagctgat gcgcgatctc aacctggtcg cctgccagcc cagaccgtgg
     1201 cggccgacca ccacggtgcc cggcgatcac ggccccatcc ccgatctggt gaagagggac
     1261 ttcaccgccg ccgcccccgg ccagaaaatg gtcggagaca tcacctacat tcacacgtgg
     1321 cagggctggg tgtatctcgc gaccgtcatc gattgttata ccaaggcctg catcggatac
     1381 gccatggccg accatctccg tacagaattg gtggtcgatg cgctcaccat ggctgcccgg
     1441 aactatccac tcgccgaggg tgcgatattt cactccgatc gcggcactca atataccagc
     1501 gcggcctttg cggccgccac tgaccgcctg aaaatccgcc gatcggtggg cgccaccgga
     1561 gtgtgcttcg acaacgcatt agccgagtcc ttcaacgctg ccgtgaaagt agaacgggtc
     1621 aaccgcaccg tttaccccac ccgcgaacac gcccgaaagg atgttgcccg gtacatcgaa
     1681 ttccgttata atagtcaacg tcttcactcg gcactcgact accagacccc gcaagaggtc
     1741 tattacgagt acttgaaccg gcagtccgca gcatgagata gcaattaatc agctgtccgg
     1801 aaaagacaag gcggcccagc cactcactca cctgcgccaa cgcatctcgc gatactcctg
     1861 tccacccgtg aatcccacgg cgcggccgtc tgcgtcccgt tgcttcgttg cttcgttgct
     1921 tcgttgcttc gccctcatgc ccggcgacca aggaaaccac tccatgatca tctccaccct
     1981 ttgcctaccc gaaacaaccg tcaacacccg gtatcagcac gcaccgttga gaagtgtctg
     2041 cactgatcag acaacgtatt ccgtcataac cggcaccatc cggtagcggt ttcctgctaa
     2101 tcgctaggcc gcaggttaga gtcgtgccgg gggcgctagc tgcataaacg gggcgctaga
     2161 gtccgagcgc acc
//
LOCUS       DASVXZ010000642         2637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_932822, whole genome shotgun sequence.
ACCESSION   DASVXZ010000642 DASVXZ010000000
VERSION     DASVXZ010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932822"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VF788_13430"
     CDS             complement(<1..341)
                     /locus_tag="VF788_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935160.1"
                     /translation="MIAVRRLNHAVLFVSELERAVEFYQQVLGMTMIAREPRADAAFL
                     RASGSENHHDLGLFGLGPGAPRPPRGYTGLYHLAWQVDTIDELVAARGVLLASGTLRG
                     ESSHGATKSLYG"
     gene            complement(411..1697)
                     /locus_tag="VF788_13435"
     CDS             complement(411..1697)
                     /locus_tag="VF788_13435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX8935161.1"
                     /translation="MRTRIVGLAVLAAVLAIGLFGVPLALGVLKYAKSDERTKLLRVA
                     DAAASAVAADVVREKMPTDLRDPNDGTQLAVYVNPGELILGSGPRVADLPVYKALHAE
                     INNADIDGDLVVAVPVTHDSDVIGAVRAASPLRTVYRLVGLIWLGMFGLGGLAVGMVW
                     LVARRQAKRLAGPLEELSDAARRLGQGDFSVRTTPAAIPEIDSVGSALNSTAERLDDM
                     LARERSFSADASHQLRTPLTGLRLRLEAALEHPGQDLRHAITDGIASADRLEQTIEEL
                     LALARDTRSSNTTPLDLPTLLDEIESGWHDRLAAQDRALQVAVDPHAPVSLASTAAVR
                     QVLTVLLDNAATHGSGTVSVAVRNAADALAIDVSDEGDGITAPEPELFTRRSRLADGH
                     GIGLALARSLAEAEGGRLRLTRPAPPTFTLLVPAQA"
     gene            complement(1749..2453)
                     /locus_tag="VF788_13440"
     CDS             complement(1749..2453)
                     /locus_tag="VF788_13440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8935162.1"
                     /translation="MSRLLVVEDDETIGSVLESSLRAHGHQVGWQRTGRGALHAAAGA
                     DFDLVLLDLGLPDLDGVEVCRQLRASNPTAVLVILTARTDEMDVVVGLEAGADDYLTK
                     PVRLAELLARVRAHLRRVAPPVSSGAHPMLTVGDLVVDTGSRRASVAGTEMPLRAKEF
                     DLLARLAAAPEAAVSRETLMAQVWDENWFGPTKTLDVHVAALRRKLAGMAQLGAVPRI
                     TTLRGHGYRLEIPSGP"
     gene            complement(2531..>2637)
                     /locus_tag="VF788_13445"
     CDS             complement(2531..>2637)
                     /locus_tag="VF788_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007031786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3107 domain-containing protein"
                     /protein_id="HEX8935163.1"
                     /translation="VDDKGRRYMVPTSRVAYVEIGPADSRRVGFSVGG"
BASE COUNT          451 a          908 c          857 g          421 t
ORIGIN      
        1 ccgtacaaac tcttggttgc gccgtggctg gactcgccgc gcaatgtccc cgaagcgagc
       61 agcaccccgc gcgcggcgac caactcgtca atggtgtcga cctgccaggc caggtggtac
      121 agcccggtgt aaccgcgggg tggtcgagga gctcccggac cgagcccgaa caatcccagg
      181 tcatgatggt tctccgagcc gctcgcgcgc aggaacgcgg catcagcccg aggctctctg
      241 gcgatcatgg tcatcccgag cacctgctgg tagaactcga ctgcgcgctc caattcgctg
      301 acaaatagca ctgcgtgatt gagccggcga accgcgatca tgagtggcct cctcgacatc
      361 gcggtgacta cgttacgtcc atacccgagg tcggcgcagc atggacgcga tcaggcttgg
      421 gcgggcacga ggagggtgaa agtaggagga gcaggtcggg tcagccggag cctgccgcct
      481 tcggcttcgg ccaggctacg ggccagcgcg aggccgatac cgtgtccatc ggccaggcgt
      541 gagcgcctgg tgaacagctc cggttccggc gccgtgatgc cgtcgccctc atcggagacg
      601 tcgatagcca gcgcgtcagc ggcattgcgc accgccactg atacggtgcc tgagccgtgg
      661 gtggcggcgt tgtccagcag cactgtgagc acctgccgca cggccgcggt ggaggcgagt
      721 gacaccggcg catggggatc caccgctacc tgcagtgcgc ggtcctgggc agccagacgg
      781 tcgtgccaac ccgattcgat ctcgtcgagc agggtcggca ggtccagagg cgtggtgttg
      841 gagctgcggg tgtcccgagc cagcgcaagc agctcttcga tggtctgctc cagccggtct
      901 gcggacgcga tcccgtcggt gatggcatgg cgcaggtcct gccctgggtg ctccagcgcc
      961 gcctcgagtc gtagccgcaa tccggtcagc ggagtccgta gctggtggga ggcatcggcg
     1021 gagaaagatc gctcgcgggc gagcatgtca tcaagtcgtt cggccgtgct gttaagcgcc
     1081 gagcccacgg aatcgatctc ggggatggcc gccggtgtgg ttcggacgct gaagtcacct
     1141 tgcccgagac ggcgtgcggc gtcggagagc tcttcgagcg ggccggctag ccgcttggcc
     1201 tgccggcggg ccaccaacca gaccatgccg acggccaagc cacccaggcc gaacatgccc
     1261 agccatatca gtccaaccag ccggtaaacc gtgcgcagcg ggctggcggc gcggacggca
     1321 ccgatcacat cgctgtcgtg ggtcaccggc accgccacta cgagatcacc atcgatgtca
     1381 gcgttgttga tctcggcgtg tagggccttg tacaccggta agtccgcgac ccgcggcccg
     1441 ctacccagaa tcagctcccc ggggttgaca taaactgcca gctgggtgcc gtcattcgga
     1501 tcgcgaaggt cagttggcat cttctcgcgg accacatccg cggcgactgc cgaagcggcg
     1561 gcatccgcca ctcgcaatag tttcgtccgc tcgtcggact tcgcgtattt cagcacaccc
     1621 agagccagcg gcacgccgaa caggccgatt gccagcacag cggcgagcac ggcgaggccc
     1681 acgatgcggg tgcgcacgat ccgttaacgc ttgtgagtgg cattcggtgc cagagaccta
     1741 ttctgcactc acggccccga agggatttcc agccggtagc cgtggcctcg gagggtggtg
     1801 atccggggca ccgcgcccaa ctgggccatc ccggccagct tgcgacgcag tgccgccaca
     1861 tgcacatcga gcgtcttcgt gggaccgaac cagttctcgt cccacacctg cgccatcagg
     1921 gtctcccggc tgaccgctgc ttctggcgcc gccgcaagcc gggcaaggag gtcgaactcc
     1981 ttggcccgta gcggcatctc cgtacccgct acggacgccc gccggctgcc ggtatccacc
     2041 accagatcac ccacggtgag catcggatga gcccccgagc tcaccggcgg cgccacccgg
     2101 cgcagatggg cccgcacccg ggccagcagc tcggccagcc gcaccggctt ggtcaggtaa
     2161 tcatccgcgc cggcctcgag accgaccacg acgtccatct cgtcggttcg ggccgtgagg
     2221 atcaccaaca ccgccgtcgg attgctcgcc cgtagctgcc ggcacacctc cacgccgtcc
     2281 agatcgggca accccagatc caggagtacc aggtcgaagt cagccccagc ggcggcgtgc
     2341 agggcgccgc ggccggtgcg ctgccacccg acctggtgcc cgtgcgcgcg caggctggac
     2401 tccagcacgc tgccgatggt ctcgtcgtcc tctactacga gcagccggga cacggctatg
     2461 accttagtgc gtctcgtgag tggcgttcgg cgctataacc tataacactg ttcgccactc
     2521 acaagccgag tcaaccgcca accgaaaacc cgactcggcg gctgtccgcg ggcccaattt
     2581 cgacataggc gactcgcgac gtgggcacca tataccgtcg gcccttgtcg tcgacca
//
LOCUS       DASVXZ010000643         6237 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1238033, whole genome shotgun sequence.
ACCESSION   DASVXZ010000643 DASVXZ010000000
VERSION     DASVXZ010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6237
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1238033"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VF788_13450"
     CDS             <1..250
                     /locus_tag="VF788_13450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935164.1"
                     /translation="RANLNALRQTLHGHQNGQISSAEDIIDAAEAYAAHTPDPNRRAA
                     LLKAARLLRRIDQTVVKFATDLGHVGEARPPQNLPANA"
     gene            complement(180..611)
                     /locus_tag="VF788_13455"
     CDS             complement(180..611)
                     /locus_tag="VF788_13455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935165.1"
                     /translation="MTLIEPGGYDTDWGGSSARRATPLPAYDPVRKQAAEQRAHRVAS
                     LGKPEATRQAILQVVDAERPPLRIFFGNGPLGIATGRLRVTAGDLARVEEGVRLGTGR
                     GLAEHGRPELDLTVDSLPARRSLAGSAAASPRQRGRGRSRT"
     gene            complement(608..826)
                     /locus_tag="VF788_13460"
     CDS             complement(608..826)
                     /locus_tag="VF788_13460"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935166.1"
                     /translation="MAAKVWFITGTSRGFGHEGAIAALERGDKVAATARDTASLRELA
                     DKYGDAVVPLALDVTDRQAVFDTVTELR"
     gene            complement(883..1254)
                     /locus_tag="VF788_13465"
     CDS             complement(883..1254)
                     /locus_tag="VF788_13465"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX8935167.1"
                     /translation="MVVTRNDMEIMQEEIFGPVSPIMAFDDLDEALDLANDSKYGLSV
                     YLFSNDAKTVQRFVEGCNFGELYINKIGPEQLNGHHTDYRLTGILGDDGTHGFEKYSR
                     RRTTYTSWRQETAADLMPFAG"
     gene            complement(1152..2339)
                     /locus_tag="VF788_13470"
     CDS             complement(1152..2339)
                     /locus_tag="VF788_13470"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX8935168.1"
                     /translation="MPTAPADWPNPPAIKRRPPQGPPATYPAPRHHYPGRSAVGTRGR
                     AASSPAWAALTPRERAEYLQRVAQLVRADAERLSRLISHEEGKPLRESRVEIEGWTAG
                     FFEYFSSFARAAHGEILPSDNRGEEIAIRKVPYGVCVGVTPWNFPSAMVARKVAPALM
                     AGNAIVVKPSSTTPLSALALAAIFDRAQLPPGVVSVLTGAGGTLGDALVRNPVTQLVT
                     LTGSVGAGKKIAAGAAENLAAVSLELGGKAPFIVTTWTSTAPRHALTARFQNNGQVCT
                     CNERTYVHRRVFDQFLDRYAALAHQLRVDDPLDDATDLGPKVTREELEKVEQMVANAS
                     QQGAEIVTGGARAEVPGLKAASGTSRQFWSSPATTWRSCRRRSSGRCHRSWRSTTSTR
                     RST"
     gene            2273..2707
                     /locus_tag="VF788_13475"
     CDS             2273..2707
                     /locus_tag="VF788_13475"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8935169.1"
                     /translation="MVLAEDDVLLREGLASLLERSGFAVVGQAGGGPQLVALVREEAP
                     ELVVVDIRMPPTHTTGGLEAARVIRQEFPEIGIVVLSAHAEVEHAMELLASGRGSVIC
                     LRAGSPTWRSSSRPSSGSPGVVQWWIRRWWPSWSRRAGAMIR"
     gene            2710..2910
                     /locus_tag="VF788_13480"
     CDS             2710..2910
                     /locus_tag="VF788_13480"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935170.1"
                     /translation="MLSTREREVLALMAEGRSNAGIGRRLWVTEGTVEKHVRSILAKL
                     RLPETDDDHRRVLAVVTFLEAR"
     gene            3081..4034
                     /locus_tag="VF788_13485"
     CDS             3081..4034
                     /locus_tag="VF788_13485"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935171.1"
                     /translation="MSEQDADDAVRVHRAIRTRKGMAVIEEAGMDVAVLGMGRMGRAL
                     AARLLEGGHRVAVWNRSKGKAGEVVSAGAREAHSVADAVDGVDVAITMLANDGAVRAV
                     AMGELRSSIAGKTIYVDCSTVSPELSGELAETFPAQFLAMPVVGSPVAVRTGQAVFLA
                     GGDAGVVDRLQPVLSSLSATVRRYDTAPLAITAKLATNLLLLSEVVALAESFAVGRSG
                     GLSDDQLRDLFGTSPLVPPGLKNRFEDVLTGSQEGWWTTVLGAKDAGLALDTAHKADV
                     ELPAAQVVQQRYEKAAASGLDDADIAAVTELYRGAATTVLG"
     gene            4044..4472
                     /locus_tag="VF788_13490"
     CDS             4044..4472
                     /locus_tag="VF788_13490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010695306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX8935172.1"
                     /translation="MHVMDEAEYRRFLTEGTRTGKLATTRADGRPHVAPVWFDLDHDG
                     TIVLTTGAGSVKGKALRRDPLVCLCVDDETPPYSFVVIDGTAEITEDPELLLEWATRI
                     AGRYMGPDRAEEYGRRNAMPGELLVRITPNHVVAQADIAD"
     gene            complement(4897..5349)
                     /locus_tag="VF788_13495"
     CDS             complement(4897..5349)
                     /locus_tag="VF788_13495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935173.1"
                     /translation="MALATHRPHYAFVAGLATAIGAGFSMAFSEGLSDSGDQTGRGNP
                     YLCGSITGVGTFLGGILHTLPFLIPQYGAALIVAVITVAFELLALAWIRGRFFHTGFL
                     RSFASVTLAGAIIAGISAFSERPDRDDRAGAPPGVSVLRAALCGADDR"
     gene            5443..>6237
                     /locus_tag="VF788_13500"
     CDS             5443..>6237
                     /locus_tag="VF788_13500"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935174.1"
                     /translation="MGASWVARDASFVPGSVCWIDVSSTDPVGSRDFYRGLFGWTYQA
                     LSHPGREQRTIALCGGRPVAGLAGVSVKAGRPASWTLYLASASVIRTAQLLRRRGGRL
                     LSGPTTVPGQGRALIGVDPTGAVIGFCQPTGSWMFSRRTGPGSLYWAELGTWDGARAD
                     AFFADLFGYQQQQIGDGINVDYTTWSVDGDTMLGRLGMHESWADPDCAAHWMLHFAVE
                     SRIGTDAAVDRVLALGGRVDIDPYDTELGRIARVTDPSGAAFALIDP"
BASE COUNT         1016 a         1978 c         2178 g         1065 t
ORIGIN      
        1 ccgcgccaat ctcaacgcgc tgcgccagac cctacatggc catcagaacg gacaaatctc
       61 ctccgccgag gacatcatcg acgccgcgga ggcctacgcc gcccataccc ccgacccaaa
      121 ccgccgcgct gccctcctca aagcggcccg gctgctgcgc cggatcgacc agacagtcgt
      181 caagttcgcg accgacctcg gccacgttgg cgaggcgagg ccgccgcaga acctgccagc
      241 gaacgcctag ctggcaggct gtcaacggtc aaatcgagct ccgggcgtcc gtgctcagcc
      301 agccctcgcc ctgtgccgag acggacacct tcttccactc gcgccaggtc gccagccgtg
      361 actcgtagtc ggcccgtggc gatgccgagt ggcccgttgc cgaagaagat gcgcaacggc
      421 ggtcgctccg cgtcgaccac ctggaggatg gcctgcctgg tcgcttcggg cttgccgagc
      481 gaggccaccc ggtgggcacg ctgctcggcg gcctgcttgc ggaccgggtc gtaggccggc
      541 aggggcgtcg cgcgcctggc cgacgagccg ccccagtcgg tgtcgtagcc tcctggctcg
      601 atcagcgtca ccttaattcc gtgaccgtgt cgaacaccgc ttggcggtca gtgacgtcga
      661 gagctagcgg cacgacagcg tcgccgtatt tgtccgccag ctcacgcaac gatgccgtgt
      721 cgcgggcggt tgcggccacc ttgtcaccgc gctccagggc ggcgatggcc ccctcatgac
      781 cgaagccgcg cgacgtaccg gtgatgaacc agaccttggc tgccatgaga ctctcctcct
      841 tcggaccctg ccctcgatcg tggcgatgtc gtggtcgtga gttcatccgg cgaacggcat
      901 caggtccgct gcggtctcct ggcgccaact cgtgtaggtg gtgcgtcggc gcgagtactt
      961 ctcgaaccca tgagtgccgt catcgccgag gatgccagtg agacggtagt cagtgtgatg
     1021 accatttagc tgctccgggc caatcttgtt gatgtagagc tcgccgaagt tgcagccctc
     1081 cacgaagcgc tgcaccgtct tcgcgtcatt ggagaacagg tagaccgaca acccgtactt
     1141 gctgtcgttg gctaggtcga gcgcctcgtc gaggtcgtcg aacgccatga tcggtgacac
     1201 cggcccgaag atctcctcct gcatgatctc catgtcgttg cgggtgacga ccagaactgt
     1261 cggctcgtac cagaagccgc cttcaaaccc ggcacctctg cgcgagcgcc gccggtcacg
     1321 atctcggcgc cctgctggga cgcgttagcg accatctgct cgaccttttc gagttcttcc
     1381 ctcgtcacct tcggaccaag atcagtggcg tcgtcgagcg gatcgtcgac cctaagctgg
     1441 tgggccagtg cggcgtagcg atcgaggaac tggtcgaaga cgcgccgatg cacgtaggtg
     1501 cgctcgttac aggtgcacac ctggccgttg ttctggaagc gcgcggtcag cgcatggcgc
     1561 ggcgctgtcg acgtccacgt cgtcacgatg aacggcgcct tgcccccgag ctcgagcgag
     1621 acggcggcca ggttctcagc tgctccggcc gcgatcttct tcccggcgcc taccgagccg
     1681 gtgagagtaa cgagttgggt gaccggatta cgcacgagcg catcgccgag cgtgcctcca
     1741 gcgccggtca acacgctgac gaccccgggg ggaagttggg cccggtcgaa aatcgcggcg
     1801 agcgccagcg ccgagagagg cgtcgtcgag ctcggcttca ccacgatggc gttgccggcc
     1861 atcaatgccg gcgcgacctt gcgggcgacc atggctgagg ggaagttcca cggtgtgacg
     1921 ccgacgcaga ccccgtacgg cacctttcga atggcgatct cctcaccgcg attgtcggac
     1981 gggaggatct cgccatgagc cgcgcgcgcg aagcttgaga agtactcgaa gaaccctgct
     2041 gtccagccct cgatctcgac gcgcgattcg cgcaggggct tgccctcttc gtgcgagatg
     2101 agccgggaca gacgctcggc gtcggcacgc accagttggg cgacccgttg gaggtactca
     2161 gcgcgttcgc gtggcgttag tgccgcccaa gcgggtgagc tcgctgcgcg gcctctagtg
     2221 ccaactgcgc tccggccggg atagtgatgt ctcggcgctg ggtaggttgc gggtggtcct
     2281 tgcggaggac gacgttttat tgcgggaggg tttggccagt ctgctggagc ggtcgggatt
     2341 tgcggtagtg ggccaggccg gtggtgggcc gcagctggtg gcgctggtcc gtgaggaggc
     2401 gcccgagttg gtggtggtcg atatccggat gccaccgacg cataccaccg ggggcttgga
     2461 ggcggcccgg gtgatccgcc aggagttccc ggagatcggc atcgtggtgc tctcggcgca
     2521 tgccgaggtt gagcatgcga tggagttgct ggccagcgga cggggatcgg ttatttgctt
     2581 aagagccggg tcaccgacgt ggcggagttc gtcgagaccc tcgagcggat cgccaggggt
     2641 ggttcagtgg tggatccggc gctggtggcc gagctggtct cggcgcgccg gcgcaatgat
     2701 ccgctagggg tgctcagcac gcgggaacgc gaggtgctgg cgctgatggc cgaggggcgc
     2761 tccaatgccg gcatcggccg ccggttgtgg gtcaccgagg gtacggtgga aaagcacgtg
     2821 cgcagcatcc tggccaagct gcgcctgccg gagaccgacg acgatcaccg tcgggtactg
     2881 gccgtggtca ccttcctgga ggctcgctga cggatccacc ggggcaatga tcgttcacgt
     2941 ggtgcaggct ggcgatgaac aggattgcgt cggtgcggct agtgggtacc tcggactgcg
     3001 gccaacagga agcccaacct ggatgctggc gccgaagacg gacgatcacc caagggccaa
     3061 cctgaaagag cacgggtttg ttgagtgaac aggatgctga cgacgccgtc cgcgtccacc
     3121 gggcgatccg gacgcggaag ggtatggcag tgatcgagga ggctgggatg gacgtcgcag
     3181 tgttgggcat gggacggatg gggcgcgcgc tcgccgcaag gctgcttgag ggcggccacc
     3241 gggtggcggt gtggaaccgc tcgaagggca aggccggcga ggttgtgtcc gcgggcgcca
     3301 gggaagcgca cagtgtcgcc gacgccgtgg acggtgtcga tgtcgcgatc accatgctgg
     3361 ccaacgacgg cgcggttcgg gcagtggcga tgggggaatt acggtcgtcg atcgcgggaa
     3421 agaccattta tgtcgactgc tcgacggtat cccctgagct cagcggcgag ctagccgaga
     3481 ccttccccgc ccagttcctc gcgatgcccg tcgtcggcag tcccgtcgcg gtgcggacag
     3541 ggcaggcagt gttcctcgcc ggcggcgacg ccggcgtcgt ggaccgcctg caacccgtcc
     3601 tgtcgtcgct gtcggcaacc gtgcggcgat atgacaccgc gccgctggcc atcactgcca
     3661 agctggcaac caacctgttg ctgctgtcgg aggtggtcgc gctggccgag tcgttcgccg
     3721 tcggccgctc cggaggactc tcggatgacc agctgcggga cctgttcggc accagccccc
     3781 tggtgccgcc tgggctgaag aaccggttcg aggacgtgct gaccggctcg caagagggat
     3841 ggtggaccac cgtgctgggc gccaaggatg ccggcttggc actcgacacc gcccacaagg
     3901 ccgatgtcga gctgccggca gcccaggtgg tgcagcagcg ttatgaaaaa gctgcggcgt
     3961 caggtctcga tgacgctgac atcgccgccg tgaccgagct ctaccgcggc gcagcgacga
     4021 ccgtcttggg atgatctgtg gccatgcatg tcatggatga agccgaatac cgccggtttc
     4081 tcaccgaagg aacccgaacc gggaagctgg ccaccacccg ggccgacggg cgcccccacg
     4141 tcgctcctgt gtggttcgac ctcgaccacg acggcaccat tgtcttgacc accggggcgg
     4201 gctcggtgaa gggcaaggct ctccggcgag atcctctggt ctgcctgtgc gtcgacgacg
     4261 agacgccgcc gtactccttc gtggttatcg acggtaccgc tgagatcacc gaggaccctg
     4321 agctgctgct ggagtgggct acccggatcg cgggccgcta catgggcccg gaccgggccg
     4381 aggagtacgg ccggcgcaat gcgatgcccg gcgagctgct ggtgcgcatc acgccgaacc
     4441 acgtcgtggc ccaggcggac atcgccgact aagccgcatc gggaattccc accgcgtgga
     4501 cctctccagg aaaacctcgc caccccacac ccctccaccc agctgggggt ggtttgtccg
     4561 cgcggccagg caggcggcca tgatcgggca ccggcgacag atggtctggg cgtcgcgatg
     4621 gcgctcagcg cgctgcacca cggactcgcg cacaccatcc agctcggcat cccacgggct
     4681 tgggtatggg cgacccgcac acagcccgcc gtgcaggtca ggtagcagga tccagatcgt
     4741 ctcggtggtc cggtcagtgc cggtggcagg gaccggacac caacaacgca gttcccccgg
     4801 cccacacggt agccaaggct tcgcggatgc tggcggtgtc ggtcggcgcc caggagttgg
     4861 tgaccggtac tcggtgcatc accacttgct cgctcctcag cgatcgtcgg cgccacacaa
     4921 tgcagcgcgc agtacagaaa caccaggcgg cgcacccgct ctgtcatccc gatccggccg
     4981 ctccgagaag gcactgatcc ccgcgatgat cgcgcctgca agcgtgacgg aggcgaacga
     5041 acgcaagaat ccggtgtgga agaagcgtcc gcggatccaa gcgagcgcga ggagctcgaa
     5101 agcgaccgtg atgacggcca cgattagcgc agcaccgtac tgcgggatga gaaagggcag
     5161 cgtgtgcaaa atgccgccga ggaaggttcc tacgccggta atcgaaccgc acagataggg
     5221 attcccgcgt ccggtctggt cacccgagtc ggagagtcct tcggagaagg ccatgctaaa
     5281 gccggcgccg atcgcggtcg caagtccggc aacaaaggcg taatgggggc ggtgggtggc
     5341 gagtgccacg gcgaagatcg gcgcccactg agcccgctgg atgcgatcgg ggtgtatctg
     5401 tgggtatttt gggcttctct ttgaggtatg cgggtgaatc ggatgggcgc gtcgtgggtg
     5461 gccagggatg cgtcgttcgt ccctgggtcg gtgtgttgga tcgatgtgtc gagcaccgat
     5521 ccggttggta gccgggattt ctaccgtggg ttgttcggct ggacctacca ggccctctcg
     5581 catcccgggc gcgagcagcg cacgatcgcg ttgtgtggcg gtcgtccggt ggctggcctg
     5641 gcgggggttt cggtaaaagc gggtcgcccg gccagctgga cgctgtattt ggccagcgcc
     5701 agcgtgatac gcaccgcgca gctgctccgc cggcggggcg gccggctgct gtctgggccg
     5761 acgactgttc cgggacaggg cagggcgctc atcggcgtgg acccgaccgg cgccgtgatc
     5821 ggcttctgcc agcccacagg atcgtggatg ttttccagga ggaccggccc gggatccctg
     5881 tactgggcgg agctgggtac ctgggacggc gcgcgggccg atgcattctt tgcggacctt
     5941 ttcggttacc agcaacagca gatcggtgat ggcatcaacg tggactacac cacctggtca
     6001 gttgatgggg acacgatgct gggcaggtta gggatgcatg agagctgggc cgaccctgac
     6061 tgcgccgcac actggatgct gcacttcgcg gtggaatcgc ggatcggcac tgacgccgcg
     6121 gtcgatcggg tccttgccct gggtggccgg gtggacatcg acccctacga caccgagctg
     6181 gggcgaatcg cgcgggtcac cgacccctca ggcgccgcct tcgccctgat cgacccg
//
LOCUS       DASVXZ010000644         4590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_162657, whole genome shotgun sequence.
ACCESSION   DASVXZ010000644 DASVXZ010000000
VERSION     DASVXZ010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4590
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162657"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VF788_13505"
     CDS             <1..458
                     /locus_tag="VF788_13505"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEX8935175.1"
                     /translation="ALPQRVFAALIGLSVLACVLLSLLRWRPRPRPGSLVLAGLASGA
                     GGTAASIGGPAIALLYQDAEGARVRGTIGGYFVLGSVTSIAALALAGQVTDESLTKAV
                     IFIPFLLVGFALSGPARRVLDNGWTRPAVLSVAALSALLLLGRVLLSSG"
     gene            497..1462
                     /locus_tag="VF788_13510"
     CDS             497..1462
                     /locus_tag="VF788_13510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935176.1"
                     /translation="MRSQRDRDTGDLAEVLERAVLARILSAEQAQAVLAAERARGEGS
                     SPGRRLPVAEALGYLGGLLALSGAVTLALQYWREVPIAGRLGLLAAVAAATWLVGARI
                     GDGSAPALIRLRGALWFASSAAVAAFAGQVAWDVAHAGESAAWLSAGAAAAVHAALLW
                     RWRDRPAQHLACLAGVLMAVGGAASLVGGAGALGLTIAAAGVVWAAAGWLRLLRPEVM
                     ALVGGGVAVLTGAGITVGDWSDAAPLLGLAAAVVLLAVGVGTDRTPLTVVGLVGGFGY
                     LPWTVGHFFADSLGVPLAMLLCGVALLSVTLVVLCRTARGVPARW"
     gene            complement(1483..2559)
                     /locus_tag="VF788_13515"
     CDS             complement(1483..2559)
                     /locus_tag="VF788_13515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF190 domain-containing protein"
                     /protein_id="HEX8935177.1"
                     /translation="MIADCLKLTSYFGERHRTGGAFLADAQLELFGQRAIATSVLLRG
                     TEGFGLKHHLRTDRLLTLSEDLPVVSVAVDTRPRIETLLSDLRGVGHRGLLTLERARI
                     LSEDIGPLALPEELPEAIKLTVYVGRLERVYRVPAFVAVCELLHRRGVAGATVLLGVD
                     GTAHGQRRRARFFGRNADVPMMIIAIGSGDRIGRVLPELGGLLRRPLITLERVRVCKS
                     DGELIERPHALPTADEHGLAVWQKLMVYTSERALHDGQPVHRALVRRLRRSGARGATA
                     LRGMWGFQGQTSPHGDRLLQLGRHVPVVTVVIDSPDRIAASFDIVDELTAEHGLVTSE
                     MVPALATITSDEGPGDLQLAQHEF"
     gene            complement(2556..2921)
                     /gene="crcB"
                     /locus_tag="VF788_13520"
     CDS             complement(2556..2921)
                     /gene="crcB"
                     /locus_tag="VF788_13520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEX8935178.1"
                     /translation="MIVLVWVGVVLIGGAGSVLRFIIDGAVTSRTGRSFPFGTLVVNL
                     SGATLLGLIAGLALNHDEALLVGTAAVGSYTTFSTWMFETQRLAEDRQLLGLMANVVV
                     SLAAGLLAAALGRLIGSHL"
     gene            complement(2918..3337)
                     /gene="crcB"
                     /locus_tag="VF788_13525"
     CDS             complement(2918..3337)
                     /gene="crcB"
                     /locus_tag="VF788_13525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEX8935179.1"
                     /translation="MFGSATVMPAPDGRELAAVFAGGAIGSLCRGLLAEAYPTTAPSW
                     PWVTFAVNLSGAFLLGYFATRLQERLPLSSYRRPLLGTGLCGGLTTFSTMQVELLTMI
                     DAHNYWLAIGYALASVVGGYAAMQLATAMVRRVRIRT"
     gene            3632..4357
                     /locus_tag="VF788_13530"
     CDS             3632..4357
                     /locus_tag="VF788_13530"
                     /inference="COORDINATES: protein motif:HMM:NF041196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ScbR family autoregulator-binding transcription
                     factor"
                     /protein_id="HEX8935180.1"
                     /translation="MSSTGRRRPGAGGSDAHAGRARLQPRARATRLAILTAAAEHFAR
                     DGYHATSLERVLADSGGTKGALYFHFASKEALARAVIDEMVQRWGDLHGQVRARGLDP
                     LSELLALVYEVIAGLIDNPIVRGGARLFGDLPVREQDSRGHYGIGESHVSDLLTRAAQ
                     AGLLREGVDPTLVARQVVAIVIGHRQICDAIGDRQHLWQRVDEAWTLLLPSIATETWL
                     VAWRSSTRSHPPRHGDISGPESH"
BASE COUNT          720 a         1505 c         1595 g          770 t
ORIGIN      
        1 tggccctgcc ccagcgggtg ttcgccgcgc tgatcggttt gtcagtgctc gcctgcgtgc
       61 tgctctcgtt actccgttgg cgcccccgac cccggccagg gtcactggtg ctggccgggc
      121 tcgcgagcgg ggcaggtggt accgcggcat cgatcggtgg ccccgccatt gcgttgctgt
      181 accaagacgc ggagggcgca cgtgttcgtg gcaccatcgg cggctacttc gtcctgggct
      241 cggtgacctc gatcgctgcg ttggccctcg cggggcaggt caccgacgaa tcgctcacga
      301 aagcggtgat cttcatcccc ttcctcctcg tcggtttcgc cctctccggt ccagcgcgcc
      361 gggtactcga caacggctgg acccggccgg cggtgctgag cgtggcggcc ctgagcgctc
      421 tgttgcttct cggacgcgtg ctcctctcaa gcggataatg caagaacaaa cccgggccga
      481 tggcgaggag cgcagtgtga ggtcgcaacg ggaccgcgac accggtgacc tcgccgaggt
      541 cctggagcgc gccgtgctgg cccggattct cagcgctgag caggcgcagg ccgtgctggc
      601 cgctgagcgc gcccgcgggg agggctccag tcccggtcgt cggttaccgg tggccgaggc
      661 gctgggttac ctcggtgggt tgctcgcgct ttccggcgcg gtgacgctcg ccctccagta
      721 ctggcgggag gtacccatcg ccggccggct cgggctgctg gccgctgtcg ctgccgccac
      781 ctggctggtg ggggctcgga tcggtgacgg ctcggcgcct gcgttgatca ggctgcgcgg
      841 cgcactatgg ttcgcgtcct cggccgcggt ggccgccttc gccggccagg ttgcctggga
      901 cgtcgcccat gctggggaat ctgcggcgtg gctgtcagcc ggcgccgcgg cggctgtgca
      961 cgcggcgctg ctatggcggt ggcgggatcg gccggcgcag catctcgcct gcctggctgg
     1021 tgtgctgatg gcggtgggtg gcgcggcgag ccttgtcggc ggtgcaggcg cgctcgggct
     1081 gacgatcgcg gcggcgggag tcgtatgggc ggctgcaggc tggctgaggt tgctgcgtcc
     1141 cgaggtgatg gcactggttg gtggcggtgt cgcagtgctc accggcgcgg ggatcaccgt
     1201 gggcgactgg tctgacgcag ctcccctgct cggtctggcg gcggctgtcg tgttgctggc
     1261 ggtgggagtc ggaaccgacc gcacgccgtt gaccgtcgtc gggctcgtcg ggggattcgg
     1321 ctatctgcct tggacagtgg ggcacttctt cgccgactcg ctaggcgtgc cactggccat
     1381 gctgctgtgc ggggttgccc tgctctccgt caccctcgtc gtgttgtgca ggactgctcg
     1441 tggcgtgcca gcccgctggt gaactgcacc ttcatccacg catcaaaact cgtgctgggc
     1501 aagctgcagg tcaccgggcc cctcatcgct ggtgatcgtg gccagcgctg gcaccatctc
     1561 gctggtgacc aggccgtgct cggcggtgag ctcgtcgacg atgtcgaatg aggccgcgat
     1621 ccggtccggg gaatcgatga cgaccgtcac caccggaaca tggcggccca gctgcagcag
     1681 acgatcgcca tgcggactgg tctgtccctg gaaaccccac atcccgcgca gcgcggtggc
     1741 tccccgggca ccggagcgcc gcagccggcg taccagcgcc cggtgcactg gttgaccgtc
     1801 gtgcaacgct cgttccgagg tgtagaccat cagcttctgc cacacggcca ggccatgctc
     1861 gtcagcggtc ggcagagcat gcgggcgctc gatgagctca ccgtcactct tgcacacccg
     1921 gacccgttcg agagtgatca gtggccttcg cagcaaccca ccgagttcgg gcaggacccg
     1981 gccgatccgg tcacctgagc cgatcgcgat gatcatcatc ggcacgtcgg cgttgcgccc
     2041 gaaaaaccgg gcacgccggc gctggccgtg cgccgtcccg tccacgccga gcagaacggt
     2101 ggcacccgcg acaccgcggc gatgcagcag ttcgcataca gcgacgaagg ccggcacccg
     2161 gtagacacgc tccagccggc cgacatacac ggtcagtttg atagcttcgg gcagttcctc
     2221 aggcagggcg aggggaccga tgtcctcgct caggatccgc gctcgttcca gtgtcagcag
     2281 cccacggtgt ccgaccccac gaagatcact tagtagggtc tcgatcctcg ggcgagtgtc
     2341 cacagcgacg gacacgaccg gcagatcttc ggacaaggtg agtaagcggt cggtccgcag
     2401 atggtgcttg agcccgaagc cctcggtgcc gcggagcagc acactagttg cgatcgcccg
     2461 ctggccgaac agctccagct gggcgtcggc cagaaaggct ccgccggtcc ggtgtcgctc
     2521 accgaaatag ctggtcagtt tgaggcagtc cgcaatcaca gatggctccc gatcagccgc
     2581 cccagcgctg cggcgaggag tccggcggcc aggctcacca ccacgttcgc catcagaccg
     2641 agcagctgac gatcctcggc gaggcgttga gtctcgaaca tccacgtcga gaacgtcgtg
     2701 tacgagccga ccgcggcggt accgaccaac agggcctcgt catgattcaa tgccagtccc
     2761 gcgatcaggc cgagcagggt cgccccggaa aggttgacca ccaacgtgcc gaagggaaac
     2821 gaacggccgg tccgggaggt gaccgcaccg tcgatgatga agcggagcac cgaacccgcg
     2881 ccgccgatca gcactacccc gacccacacc agcacgatca tgtccggatt cgtacccgtc
     2941 gtaccatggc ggtggccagc tgcatcgccg catagccacc gacgacgctt gccagcgcgt
     3001 acccgatggc aagccagtag ttgtgcgcgt cgatcattgt gagcaattcc acctgcatcg
     3061 tggagaacgt ggtgaggccg ccgcacagcc cagtgcccaa cagcggccgc cggtagctgg
     3121 acagcggtaa ccgctcctgc aggcgggtgg cgaagtaacc gagcaggaag gcgccactga
     3181 ggtttactgc gaaggtcacc cacggccaac tcggtgccgt tgtgggatag gcctccgcca
     3241 ggagcccacg acagagcgaa ccgatggcgc cacccgcgaa gaccgcggcc agctcccgac
     3301 cgtcgggtgc gggcatcacg gtcgccgatc caaacatggt gactcgccgc ggctggcacc
     3361 aggcggcgga tggcgcagtc gtgcgggagg agatgactgg tggtgactcg gggcggtcgt
     3421 cctaccgccc cgagtcacca catccccccg cgggaccccc aaacgagtaa ccctctaccg
     3481 agggttgctg ataacggtgt tgccgcttga gcgaaacata ccagcgggtg tgtttgggtc
     3541 gccacccaat agcgtcacca cccatgaagc gtcggcaccg cgaaagttga gtggttctcg
     3601 atgaacccgg gacgagtagc gtcgaggcgt catgtccagc accggtcgta gaagacccgg
     3661 agccggcggc agcgacgccc acgcaggccg agccaggctt cagccgcggg cccgggccac
     3721 ccggctggcg attctcaccg ctgccgctga gcacttcgct cgcgatggat accacgccac
     3781 ctcgctggag cgcgtgctgg ctgacagcgg cggtaccaaa ggcgcactgt atttccactt
     3841 cgcctccaaa gaggctttgg cgcgagcggt catcgacgag atggtgcagc ggtggggaga
     3901 tcttcacggg caggtccgtg ctcggggact tgacccgctt tctgagctgt tggctctggt
     3961 gtatgaggtg attgccggtc tgatcgacaa cccgatcgtt cggggtggtg cgcgcctgtt
     4021 cggcgacttg ccggtgcgcg aacaggactc ccgcgggcac tatggcatcg gcgaaagtca
     4081 tgtttcggat ctcctgactc gagctgcgca agcgggcctg ctcagagaag gagtagaccc
     4141 gaccctggtc gcccggcagg tcgtcgcgat tgtcatcggt caccggcaga tctgcgatgc
     4201 cataggcgac cgtcagcatc tctggcagcg cgtggatgag gcatggacac tcctgctccc
     4261 ttcgatcgct accgagacct ggctggttgc ttggcgttct tccacgcgtt cccacccacc
     4321 ccgacatgga gacatatccg gcccggagag ccattaacca ccccgacatg gagacatatc
     4381 ggagttgtcg ggggcggggg tgtggggggg tgggggggtg gggggtgggg gtaagggccc
     4441 cggcgccacg ggggcaacgc gacgccgggg ccataaaccc gatccgtccg ggcgcggtcg
     4501 gacagatcgg gggttcatgg cgccaggatt agtcgacccg ggatcggcaa gaccggtcgg
     4561 agagaccggc cgccggcagc ggcgaactaa
//
LOCUS       DASVXZ010000645         2006 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1596408, whole genome shotgun sequence.
ACCESSION   DASVXZ010000645 DASVXZ010000000
VERSION     DASVXZ010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1596408"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..914)
                     /locus_tag="VF788_13535"
     CDS             complement(96..914)
                     /locus_tag="VF788_13535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935181.1"
                     /translation="MLGNQLRQLREASGVSAGAAGHAIRASHAKISRMELGRVGFKER
                     DVADLLTLYGISDEQERGAFLALARRANVPGWWHHYGDILPSWFEMYLGLEQASSVIR
                     TYEPQLVPGLLQTEESARAVIQLGNPDLCEADIDRRVALRMKRQKVLTEPEGPNLWAV
                     IDEAALWRLDGRAAMRHQIQHLIEMTELPNLTLQVMPFYSGAHAAVGGPFTILRFSEH
                     DLPDLVYLEQLTSALYLDKGEDVQHYLVVMDRLCVQAKSPGETIRFLNSTLKET"
     gene            complement(1096..1323)
                     /locus_tag="VF788_13540"
     CDS             complement(1096..1323)
                     /locus_tag="VF788_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8935182.1"
                     /translation="MPQVTDCMPVRDMTWRKSSHSNPNGNCVELAELSGGKIAVRNSR
                     YPGGPAQIYPRAAMAAFVCAMKDDEFDHRAG"
     gene            complement(1527..>2006)
                     /locus_tag="VF788_13545"
     CDS             complement(1527..>2006)
                     /locus_tag="VF788_13545"
                     /inference="COORDINATES: protein motif:HMM:NF027952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain repeat protein"
                     /protein_id="HEX8935183.1"
                     /translation="QDGSASIGGPVTVSGGSASTTTTLAPGNHSLTAVFTPADLTGTR
                     GSTSAEVSAVVSAPPGAKPTATAFMVTPSGSVIQGTPVILVAQVTPTNAAGTVQFRDG
                     DTELGMPRPVIGGFALTVTSKLGKGAHSLTAVFTAANQAAFGPSMPPPVSLTVIGLS"
BASE COUNT          375 a          660 c          608 g          363 t
ORIGIN      
        1 ttcactgtgg cgacccgagc gcagcgacat aggcaccctt accgaagtga cccagtactg
       61 cgggctcgcc cggaagccgt gaatcgactt ccgcctcagg tctccttgag ggtgctgttg
      121 aggaatctga ttgtctctcc aggcgacttg gcctggacac acaaccgatc catgaccacc
      181 aggtagtgct gaacgtcctc gcccttgtcc aggtaaaggg cgctggtcag ctgctccagg
      241 taaacgagat caggtaagtc gtgttcggag aatcgcagga ttgtgaaggg gccacccacg
      301 gccgcgtgcg cgcccgagta gaacggcatc acctggagcg tgaggttggg gagctcagtc
      361 atctcgatca gatgctggat ctggtgccgc attgccgcgc gcccatcaag acgccacagc
      421 gccgcctcgt cgatcacggc ccacaggttg ggcccttcgg gctcagtgag gaccttctga
      481 cgtttcatcc gcaacgcgac ccgacggtcg atatccgcct cgcacagatc tgggttgccg
      541 agctggatga cggcacgggc gctttcctca gtctgcagca agcccggcac gagttggggc
      601 tcataggtgc ggatcaccga gctcgcctgc tccaaaccga ggtacatctc gaaccagctc
      661 ggcaggatgt cgccatagtg atgccaccag ccgggcacgt tggcccgccg cgccaatgcc
      721 aggaacgccc ctcgctcctg ctcatcgcta atgccataga gagtgagcag atctgccacg
      781 tcgcgctcct tgaaaccaac ccgtccgagc tccatgcggc tgatcttggc atgggaggct
      841 cgaatcgcgt ggccagctgc tccagcactg actccgctcg cttcacggag ctgccgtagc
      901 tgattgccca acacaatgcg cagcgcggtc ggcccttgcg atcgtacctg agcgtgacta
      961 ctggccagat cttgacccga ccgtgccgcc ctcaccattc ctcctacggg tgaagtacta
     1021 cggatggtct caccatagac cgcactaaga tcacccggaa ccccggcagg cccctcgaga
     1081 gtgccgggcc ggggctcaac cggcccgatg gtcgaactca tcgtccttca tcgcgcagac
     1141 gaacgcggcc atcgcggcgc ggggatagat ttgggcggga ccgcccggat accgagagtt
     1201 gcgcacggcg atcttgccgc cgctcagctc cgccaactcc acacagttac cattgggatt
     1261 gctgtgactg ctcttcctcc acgtcatatc ccgcaccggc atacagtccg tgacctgcgg
     1321 catttcccaa cccttccatc ggctccggtc ggctgcctgc caccagagcg gtcatgaccc
     1381 gcccgccccg tgagcgcgag agtatgtgat tgcatcagta catgcattgg tacaggacgt
     1441 tttaggtagc gaaccgccgt ggcattccgg tgaatcactc aaagtgccca tccgcacacg
     1501 gaaggactag gtgaggtgtc cggaaactag gacagaccaa tcaccgtcag tgacacagga
     1561 ggaggcatcg acgggccgaa ggccgcctga ttggccgcag tgaacactgc ggtgagtgaa
     1621 tgtgcgccct tgccgagttt cgaggtcacg gtcagcgcga aaccaccgat cactggccgc
     1681 ggcatcccta actcagtgtc gccatccctg aattggaccg tcccggctgc gttggtcggc
     1741 gtcacttgcg cgacgaggat caccggggtg ccctggatga ccgagccgct cggtgtcacc
     1801 atgaacgcgg tcgcggtggg tttggccccg gggggcgcgc tgaccaccgc ggagacttcc
     1861 gcagaggtcg acccgcgggt acccgtcaga tccgccgggg tgaacaccgc ggtcaacgag
     1921 tgatttcccg gtgccaacgt cgtggtcgtc gaagcggaac ctccggagac ggtgaccggg
     1981 ccaccgatgc tggcgctccc gtcctg
//
LOCUS       DASVXZ010000646         2311 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_752702, whole genome shotgun sequence.
ACCESSION   DASVXZ010000646 DASVXZ010000000
VERSION     DASVXZ010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_752702"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..1285)
                     /locus_tag="VF788_13550"
     CDS             complement(116..1285)
                     /locus_tag="VF788_13550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935184.1"
                     /translation="MISSTAELAHPERKEIARYLLSRGLDPVELIPAPARVAQLLGAA
                     APPIDFPDGFAPRPAPLDPAPLPDDPLPPADVVVITWTVDELAGLAQVLTPGVSPQRW
                     HRYTRHFADYQDKIRPHAPAATSRRLGSYLPTRIGNTSVLCIKSELHLNQDGIKTGEG
                     TATLPVKDFFKQIIDEVRPSVFLTIGTAGSVFDDFQLGDVVITRAAKFRLADEFRNEP
                     FNGQIFRSDWALPTSHLANARDLMRRFVAELAEPPFGPPHPGFVFSGPLIEAPRNDPD
                     VKLELAGRDMPEFHPILTTDYFEYGTTTNRLDKEGAAVEMGDAVLGLACAELINPPRW
                     AVVRNMSDPVINGDLPAKQFHLNEQTTWAVGYYTAYGRWTSTTGAIATWAVIAGL"
     gene            1592..2107
                     /locus_tag="VF788_13555"
     CDS             1592..2107
                     /locus_tag="VF788_13555"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020495505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX8935185.1"
                     /translation="MHETPADLAALQDLLDRSYAIAGPHLLRIITPERRLSAGQVADR
                     LTGMRLLALATVTADGRPIVGPVDGIFFRGAFYFGSSPDSVRFRHIRNRPQVSATHLP
                     GEDLAVTVHGRAVPIDIHSDAGAEFRKTLLEVYVPRYGVEWEEFLDSGPVYARVEADR
                     MFTFHMTPDSD"
BASE COUNT          414 a          715 c          751 g          431 t
ORIGIN      
        1 cggcatgccg cctccgcaag taactcgtcg catccggtcc atgccgggga atcgttcacg
       61 gcgccagtct gtcagcgcga tccccgcccg cgtgatcatt taccattgcg gcgtctcaca
      121 gcccagcgat cactgcccat gtcgcgatgg ctcctgtcgt gctggtccag cgcccgtagg
      181 cggtgtagta accgactgcc caggtggtct gctcgttgag gtggaactgc ttggccggta
      241 gatcaccgtt gatcacggga tcggacatgt tgcggaccac ggcccaacgg ggtgggttga
      301 tgagttccgc gcaggccaag ccgagcaccg catcgcccat ctccacggcg gcgccctcct
      361 tatcgagccg gttggtggtg gtgccgtact cgaagtagtc agtagtcagg atcgggtgga
      421 actcgggcat gtcccgtcct gccaactcca gtttgacgtc cgggtcattg cgcggtgcct
      481 cgatcagcgg tccggagaag acaaagcccg ggtgcggcgg cccgaacggg ggctctgcca
      541 gctcggccac gaaacgcctc atcaggtccc gcgcgttggc cagatggctg gtaggaagcg
      601 cccaatcact gcggaaaatt tggccgttaa atggctcgtt gcgaaactca tctgccagcc
      661 ggaacttggc cgcccgggtg atgacgacat caccgagctg gaaatcatcg aacacgctgc
      721 cagctgtgcc gatagtgaga aacaccgaag gacgcacctc atcgatgatc tgtttgaaga
      781 agtccttgac aggcagggtg gccgtgcctt cgcctgtctt gatcccgtct tggttgaggt
      841 gcagctcgga cttgatgcac aagacgctgg tattgccgat tcgagtaggc agatagctgc
      901 ccagtcgccg ggaagtggcc gccggcgcat ggggtcggat cttgtcctgg taatcggcga
      961 aatggcgggt gtaccggtgc catcgctgcg gagatacccc cggtgtgagt acctgcgcca
     1021 gccccgccag ctcatcaacc gtccaggtga tgaccaccac atccgccgga ggaagtggat
     1081 catccggtag gggtgctgga tccaggggcg caggccgcgg cgcgaagccg tccgggaagt
     1141 cgatgggtgg agcggctgct cccagcagtt gagctacccg agccggcgcc gggatcaact
     1201 cgactgggtc cagaccacgg gacaacaggt agcgggcgat ttccttacgc tcgggatgag
     1261 cgagttcagc cgttgaactg atcatgttga cacccctttt tttctgcccg gcgacggcga
     1321 ggtgtcgatg tgaccatgtg accgttgatg gtcacccttt gcacagctca ccctgagccg
     1381 tcacaggaca agagccacgc ggccccgcac agatacccag tgcgcgggaa tacaaaagga
     1441 accacccgat aagcggagtc cgcactgtgg ccggcctgag cgcgaccaca tcactgggtg
     1501 cagccccgcc cgtaaatgtg gcttcggtcg agtgaaccgg tgcatcaagt tagagcaacc
     1561 cggctagtga cgcgcctggt tcaatgttga cgtgcacgag acgccagccg acctggccgc
     1621 actgcaagac cttctcgacc gcagctacgc gatcgcaggt ccgcacctgc tcaggatcat
     1681 cactccggag cggcgtctga gcgctggcca ggtcgccgac cgactgactg gtatgcgctt
     1741 gctggcattg gcgacggtca ccgccgatgg tcgcccgatc gtcggaccgg ttgacggcat
     1801 cttttttcgc ggcgctttct acttcggttc ctcaccggat tcggtgcgct ttcgtcacat
     1861 caggaatcga ccgcaggtca gcgcgaccca cctgcctggg gaggatctcg cggtcacagt
     1921 ccacggtcga gccgttccca tcgacatcca cagcgacgcg ggagcggagt tccggaagac
     1981 cctgctcgag gtctacgttc cacgctacgg agtggagtgg gaagagttcc ttgattccgg
     2041 cccggtctat gcccgcgtcg aggccgaccg gatgttcacg ttccacatga cacccgacag
     2101 cgactgaact ggtggtgcgt ccggctgggc cgctgccagg tcagcgagaa cgcggtcggc
     2161 agccaggccc attcgacgcg gtcgcacacc ggccaggtgc gtccccgcgg ggctcagaac
     2221 ggcgctggtt ggtgggtccg gtgccggtcg tggggttgtg tggttcgcga tggtcgaggt
     2281 caccgcggtg agcaggactc aaacaggacg g
//
LOCUS       DASVXZ010000647         5296 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_252941, whole genome shotgun sequence.
ACCESSION   DASVXZ010000647 DASVXZ010000000
VERSION     DASVXZ010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5296
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252941"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1162)
                     /locus_tag="VF788_13560"
     CDS             complement(<1..1162)
                     /locus_tag="VF788_13560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935186.1"
                     /translation="MTAPMDLAREIADAVLYEGYLLYPYRASARKNQIRWQWGVLVPP
                     AYAAAGHGEHASSRSECLLEPGADPVLHLRLRFLQLQHRSGGDGPVPEFDEAVEQEVD
                     AVLSVSELLDTEQVVPVTVPGGTETTDGVTRERWPLAGEVRVSAERLEGPYGVLQLGI
                     EVLNTAPWADAEAERHLALRHSLIAAHTVLAVTDGEFISLIDPPEWAKLAVETCRNER
                     TWPVMIGEAGRRDVILISPIILYDYPRIAPESPGELFDGTEIDEILTLRTMTLTDEEK
                     AEARATDERARKLMDRVDSMPPEMLDKLHGAIRYLGETPATRKEPDPIETITTPGTPW
                     WDPGADASVDPETDSVVIAGVEVAKGSKVLLMPGLRRSDAQDMFLEGRSATVA"
     gene            complement(1159..1812)
                     /locus_tag="VF788_13565"
     CDS             complement(1159..1812)
                     /locus_tag="VF788_13565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6084 family protein"
                     /protein_id="HEX8935187.1"
                     /translation="MPELSFTCLDVRPEGYAVAPTLLFRLRIDVPAGQKVQAIALRTQ
                     FRIEPARRGYSEEEAERLLELFGERGRWGDTLKPFQFANTSTVVASFTDSIEVDVVVP
                     CSYDMEVAAGRYFHGLKDGEIPFILLFSGTVFADGEKGLWIQQVPWHAETRYRVPVAV
                     WREMMNLHFPGSGWLRLRRDTIDALAEYRAVRALPTWDDAVLTVLDAARERTAEGGA"
     gene            complement(1805..2446)
                     /locus_tag="VF788_13570"
     CDS             complement(1805..2446)
                     /locus_tag="VF788_13570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5947 family protein"
                     /protein_id="HEX8935188.1"
                     /translation="MKGGLRRFVASAAPPPPPTEQQPGERCEMCAEPIGEWHGHVVNI
                     ESRGLMCTCRPCALLFTNEGAAGGRFKAVPERYRYAADVPLAEATWDSMGIPVAMAFF
                     FTNSALGQTVAFYPSPAGATESLLSLEAWTDLLAAIPGMADLSADVEALLVHKSENGF
                     EFFAVPIDSCYQLVGLVRMYWKGFDGGEEAWTAIHKFFDDLRERSERVVVADA"
     gene            complement(2443..3375)
                     /locus_tag="VF788_13575"
     CDS             complement(2443..3375)
                     /locus_tag="VF788_13575"
                     /inference="COORDINATES: protein motif:HMM:NF013286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEX8935189.1"
                     /translation="MPASNTSDIQAVGERVEALLAEFASASDPAIAGRAEELVGLLVD
                     FYGAGLARILELLDEQAVTPLLTDKAVAGLLVLHDLHPQSTEERVLAALDRVRPYLGS
                     HAGGVEYLGLDDDGTVRLRLEGSCDGCPSSALTVKMAIEKGIEDVAPEVTKVEVEGVS
                     LEPSSPLTSAATPEGHTLLPLTQVSRQPEPPASTWVQVDGIEGLSQGQVVPTLVADIP
                     TVVCNVAGSLYAYADRCAVCGSGLTGAELVGGVLACPNCPQRYDVVRAGRGMAMAGND
                     NGVVSSRAGVHLDPLPLLAENDGVRIAVPAQAVS"
     gene            complement(3379..5181)
                     /locus_tag="VF788_13580"
     CDS             complement(3379..5181)
                     /locus_tag="VF788_13580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020500148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEX8935190.1"
                     /translation="MTSTASRHSSTGQLTEMVWDPVTRIVGSLGIYTKIDFGAKRVAE
                     CHSSSSVFRGYSIFMKGKDPRDAHFITSRICGICGDNHATCSVYNQNMAYGVAPPHLG
                     EWVINLGEAAEYMFDHNIFQENLVGVDYCEKMVAETNPGVLDQANRTPAPQTEAHGYK
                     TIGDIMRALNPLAGEFYREALQVSRYTREMFCLMEGRHVHPSTLYPGGTGTVATHQLF
                     TDYYTRLMRYVEFMKRVVPLHDDLFNFFYDAIPGYEEVGRRRVLLGCWGAQNDPEHCD
                     FNYKNMTNWGRKMFVTPGVVVDGKLVTNDLVKINLGLRILLGSSFYEDWDGQEIFVDK
                     DPLGNPVDRRHPWNQHTIPRPAKRDFAGAYSWTMSPRWFDGKDHLALDTGGGPLARLW
                     PTALSGLVDTPFVKATGQSVIIDLPRTMTKPEVRFEWKIPYDKAGKPLSNAIERNRAR
                     SYFQAYQAAMALYFVEKALAEVRAGRTKTWEPFKVPKEAISCGWTEAVRGVLSHHMVI
                     RDGKIANYHPYPPTPWNGSVRDIYGTPGPYEDAVQNTPIFEENPPANFKGIDIMRAVR
                     SFDPCLPCGVHMYLGQGKELQRLHTPHAFTTTGG"
BASE COUNT          904 a         1769 c         1657 g          966 t
ORIGIN      
        1 cagccacagt ggcggagcgc ccttcaagga acatgtcctg cgcgtccgac cggcgcagtc
       61 ccggcatgag cagcaccttg cttcccttgg ccacttcgac gccagcgatg acgacgctgt
      121 cggtctccgg gtccactgaa gcatcggcgc ctggatccca ccatggcgtg ccgggggtgg
      181 tgatggtttc gatcgggtcc ggttctttgc gcgtggcagg tgtctccccg agataccgga
      241 tcgcgccgtg cagcttgtcg agcatctccg gcggcatcga gtcgacccgg tccatgagct
      301 tgcgggcccg ctcgtcagtg gcccgtgcct cggctttctc ctcatcggtg agtgtcatcg
      361 tccgcagcgt gaggatctcg tcgatctcgg tgccgtcgaa cagctccccg gggctctccg
      421 gcgcgatcct cgggtagtcg tagagaatga tcggcgagat cagtatcacg tcgcggcgcc
      481 ctgcttcgcc gatcatcacc ggccaggttc gttcgttgcg gcaggtctcc accgcgagct
      541 tggcccactc cggcggatcg atcaacgaga tgaactcccc gtcggtgacc gcgagcaccg
      601 tgtgcgcggc gatcaacgag tgccgcagcg ccagatgacg ctcggcctct gcatccgccc
      661 acggcgcagt gttgaggact tcgattccga gttgcaggac gccgtaggga ccttccaggc
      721 gctcggcaga tacccggacc tcaccagcaa ggggccagcg ctctcgggtg acaccgtcgg
      781 tggtctcggt gcccccaggc acagtaaccg ggaccacctg ctcggtgtcc aggagctcgg
      841 acaccgacag cacagcgtcg acctcctgct ctaccgcctc atcgaactcg ggcaccggcc
      901 cgtccccgcc gctgcggtgc tgcaactgca ggaaccgcag ccgaagatgc agtaccgggt
      961 cagcgccggg ctccagtaag cactcgctgc gtgaactggc gtgctcaccg tggcctgctg
     1021 cggcgtaggc aggaggcacc agcacacccc actgccagcg aatctggttc ttgcgtgccg
     1081 atgcccggta gggatacagc aggtacccct cgtagaggac ggcatcggcg atctcgcgag
     1141 cgagatccat gggcgccgtc atgcgcctcc ctccgcagtg cgttcacgcg ccgcgtccag
     1201 cacggtgagc acggcgtcat cccacgtcgg caaggctcgc acggcccgat actcggcgag
     1261 agcgtcgatg gtgtcgcggc gcaatctcag ccacccactg cccgggaagt gcagattcat
     1321 catctcgcgc cacactgcta ccggcactct gtatcgggtc tcggcgtgcc agggaacctg
     1381 ctgaatccac agtcccttct cgccatcggc gaatacggtc ccgctgaaaa gcaggatgaa
     1441 cgggatctct ccatccttga gtccgtggaa ataccgacct gcggcgacct ccatgtcgta
     1501 actgcacggc accaccacat cgacctcaat gctgtcggtg aagctggcga caaccgtcga
     1561 ggtgttggcg aactggaatg gcttgagtgt gtcaccccag cgtccgcgtt cgccgaatag
     1621 ctcaagcagc cgctcggcct cctcctcgct gtacccacgg cgtgcaggtt cgatccggaa
     1681 ctgggttcgc aacgcgatgg cctgcacttt ttgtcccgca ggtacgtcga tccgcagccg
     1741 gaacagcagc gtgggggcga cggcgtagcc ttcgggccgc acgtcgaggc aggtgaagga
     1801 cagctcaggc atcggcaact accacccgtt cgctgcgctc gcgcagatcg tcaaagaact
     1861 tgtggatcgc tgtccacgcc tcctcgccgc cgtcaaagcc cttccagtac atgcgaacca
     1921 aaccgaccag ctgataacag gaatcgatcg ggaccgcgaa gaactcgaac ccgttctctg
     1981 acttgtgtac caacaacgct tcgacatcgg cgctcaggtc agccatgccc ggaatcgcgg
     2041 cgagcagatc cgtccacgct tccagcgaca gcagggattc ggttgctcct gccgggctcg
     2101 ggtagaaggc gacggtctga cccagcgcac tgttggtgaa gaagaacgcc atcgccaccg
     2161 ggatccccat cgagtcccag gtcgcctcgg cgagcggcac gtcggcggcg taacggtagc
     2221 gttcgggaac ggccttgaac cggccccctg cggcgccctc gttggtgaac agcaaggcgc
     2281 aaggacggca ggtgcacatc agaccgcggc tctcgatgtt caccacgtgc ccgtgccact
     2341 caccaatcgg ctcggcgcac atctcacacc gttcgcccgg ttgctgctca gtgggcggcg
     2401 gtgggggagc ggcgctcgcc acgaagcgcc gcagcccccc cttcatgaca ccgcctgagc
     2461 ggggaccgcg atccggaccc cgtcattttc ggccagcagc ggcagcgggt cgaggtgcac
     2521 cccagcccgg gatgacacga caccgttgtc gttgccagcc atagccatgc cgcgtcctgc
     2581 ccggaccacg tcgtaacgct gcgggcagtt ggggcaggcc agcactccac ccaccagctc
     2641 cgcgccagtc agccccgagc cgcagaccgc acagcggtct gcgtaggcat acaggctgcc
     2701 tgccacgttg cagaccaccg ttgggatgtc ggcgaccagc gtaggaacga cctgtccctg
     2761 actcagaccc tcgatcccgt caacctgcac ccaggttgag gccggcggtt ccggctgccg
     2821 gctcacctgg gtcaacggga ggagggtgtg gccctcgggc gtagcggccg aggtaagggg
     2881 cgaagagggc tccagcgaga ccccttccac ctccactttg gttacctccg gagctacgtc
     2941 ctcgatcccc ttctcgatgg ccatcttcac cgtgagcgcg gaggaggggc agccgtcgca
     3001 gctgccctcc aaccgcaacc gcacggtgcc atcgtcgtcc agcccgaggt actcgacgcc
     3061 gccggcatgc gagccgagat aaggccggac ccggtccagg gccgccagga cgcgttcctc
     3121 ggtgctctgc gggtgtagat catgcagcac cagcaggccc gctactgctt tgtcagtgag
     3181 cagtggagtg acggcttgct cgtcaagcaa ctccaggata cgggccaggc ccgcaccgta
     3241 gaagtcgacg agcaagccga ccagctcctc ggctcgcccg gcgatcgcgg ggtcagaggc
     3301 cgaggcgaac tccgcgagca gcgcctcgac cctttcccct accgcctgga tatccgatgt
     3361 gttgctagca ggcacgactc agccgcccgt ggtggtgaat gcgtgtggcg tgtgcagtcg
     3421 ctgcaattcc ttgccttgtc ccaggtacat gtgcacacca cagggcaggc acgggtcgaa
     3481 actgcgcacc gcacgcatga tgtcgatgcc cttgaagttc gccggtgggt tctcctcgaa
     3541 gatcggcgtg ttctgcacgg cgtcctcgta ggggcccggc gttccgtaga tatcgcggac
     3601 gctgccgttc cacggggtgg gtgggtacgg gtggtagttg gcaatcttcc cgtcccggat
     3661 caccatgtgg tgcgacagca cgccacggac cgcctcggtc cagccacagc tgatcgcttc
     3721 cttcggcacc ttgaacggct cccaggtctt ggtgcggcca gcacgcacct cggccagggc
     3781 cttctccacg aagtacagtg ccatcgcggc ctggtaggcc tggaagtagc tccgcgcccg
     3841 gttgcgctcg atcgcgttcg acagcggctt gccagccttg tcgtacggga tcttccactc
     3901 gaacctgacc tcgggcttcg tcatcgtcct cggcaggtcg atgatcacgc tctggccggt
     3961 ggccttcacg aagggagtgt ccaccagccc ggacagggcc gtcggccaca gccgggcgag
     4021 cggtccaccg ccggtgtcca gagcgaggtg atccttacca tcgaaccacc gcggcgacat
     4081 cgtccagctg taggcaccag cgaagtcccg cttggccggc cgcgggatgg tgtgctggtt
     4141 ccacgggtgg cgccggtcga ccgggttacc cagtgggtcc ttgtcgacga agatctcctg
     4201 gccgtcccag tcctcgtaga atgaggagcc gagcaggatc cgcaacccga ggttgatctt
     4261 taccagatca ttggtgacca gcttgccgtc caccaccaca ccgggggtga cgaacatctt
     4321 ccggccccag ttggtcatat tcttgtagtt gaagtcacag tgctccgggt cattctgagc
     4381 accccagcaa cctagcagca cccggcgccg tccgacctct tcgtaaccag gtattgcgtc
     4441 gtagaagaag ttgaacaggt catcatgcaa cggcacgacc cgcttcatga actccacgta
     4501 gcgcatgagg cgggtgtagt agtcggtgaa cagctggtgg gtggcaacgg tgccggtgcc
     4561 gcccgggtac agcgtggagg ggtgcacgtg gcgaccctcc atgaggcaga acatttcccg
     4621 cgtgtatcgg gagacctgca gtgcctcgcg gtagaactcg cccgccagcg ggttgagcgc
     4681 ccgcatgatg tcgccgatgg tcttgtaccc atgggcttcg gtctgcggcg ccggagtgcg
     4741 gttggcctgg tcgagcacgc ccgggttggt ctcggcgacc atcttctcgc agtagtcgac
     4801 cccaaccaga ttctcctgga agatgttgtg gtcgaacatg tactcggccg cttcgcccag
     4861 gttgatgacc cattcgccga ggtgcggtgg cgccaccccg taggccatat tctggttgta
     4921 caccgaacat gtggcgtggt tgtcgccgca gatcccacag atacggcttg tgatgaagtg
     4981 agcgtcgcgc gggtccttgc ccttcatgaa gatggagtac ccgcggaaaa cggacgagct
     5041 gctgtggcac tcggccacac gcttcgcccc aaagtcaatc ttcgtgtaaa taccgaggct
     5101 gccgacgatc cgggttaccg gatcccacac catctcggtg agttggcctg tggagctgtg
     5161 tcttgatgcg gtgcttgtca tcgtctagat gcctttctcc agccggtcgg cgatcaccag
     5221 gagggcctgt aaccggtctc gagcgaccgg ctcttctttc gccacttggg ttcggtgtca
     5281 accttcttga gggtga
//
LOCUS       DASVXZ010000648         3491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_880150, whole genome shotgun sequence.
ACCESSION   DASVXZ010000648 DASVXZ010000000
VERSION     DASVXZ010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3491
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880150"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VF788_13585"
     CDS             <1..349
                     /locus_tag="VF788_13585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HEX8935191.1"
                     /translation="AGARCATDVTGFGLLGHLMKLVRASGVSAVLDAAAVPYLDGARQ
                     ALADGYVSGGTRRNLDWVRPHLAVAGSVGEDELLLLADAQTSGGLLVAGEVPGAPVIG
                     RLVPRGERLITIS"
     gene            421..855
                     /locus_tag="VF788_13590"
     CDS             421..855
                     /locus_tag="VF788_13590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEX8935192.1"
                     /translation="MISSDVNDQLRRAGLRVTAPRRSGLEWLGEHPHATVKRVRFGVA
                     QALGSVSTQTVYDVLAACTAAGQVRRIEPAGHPARFECRAGDNHHHVVCRCCGRPEDV
                     DCAVNVRPCLTPSDGHGYLLDEAEVVFWGTCQAFGSDADGPQ"
     gene            863..2428
                     /locus_tag="VF788_13595"
                     /pseudo
     CDS             863..2428
                     /locus_tag="VF788_13595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003091309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
     gene            2536..3114
                     /locus_tag="VF788_13600"
     CDS             2536..3114
                     /locus_tag="VF788_13600"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010307781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX8935193.1"
                     /translation="MGLTVVGIGGSMRDDSQSERALSVVLQGAEVAGAETVAITGPEL
                     VLPFYDPAVLERSAVALRLVQALREADGVVLVSPGYHGTVSGLVKNALDYVEDLRADS
                     RPYLDGRAVGCVAMALGWQAAVTTLTALRSIVHALRGWPTPLGAALNSAEVSFDDQGV
                     PSDAAVERTLRTIGEQVVQFALDHRARGARPC"
     gene            complement(3101..>3491)
                     /locus_tag="VF788_13605"
     CDS             complement(3101..>3491)
                     /locus_tag="VF788_13605"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8935194.1"
                     /translation="AAAVLQQLIGTDGSTSLLAVTTDGGAAVGLANLVRAAPSTAELA
                     LLVEDAWQGRGVGTALARKLVELARGEQLTEIVAVSQVGNGALTRVLRRAGLRPRGRL
                     EGGLLRVTATLQAEEPLPTTPTQVSMA"
BASE COUNT          578 a         1142 c         1208 g          563 t
ORIGIN      
        1 agccggtgcc cggtgcgcca ccgacgtcac cggtttcggt ctgctgggtc acctgatgaa
       61 gctggtccgc gcgagtggag tctcggcggt gctggacgcc gccgcggtgc cctacctgga
      121 cggtgcccgc caggcgttgg ccgacggata cgtcagtggc ggaacccggc gcaacctgga
      181 ctgggtccgc ccgcacctcg cggtggccgg ctcggtcggt gaagacgagt tgctgctgct
      241 ggctgatgcg cagacctccg ggggcctgct ggtggccggc gaggtacccg gcgcacccgt
      301 gatcggccgg ctcgtgccgc gcggtgagcg tctgattacg atctcctgaa ccgccaggcc
      361 accacctgga atgccgaatt cttgactcgt tccagataag gcgggatagt gggcggcggc
      421 atgatctcgt cagatgtcaa tgaccagctg cggcgggcgg gtttgcgggt gaccgcgccc
      481 cgccggtcag ggctggagtg gttgggtgag cacccgcacg ccaccgtcaa gcgagtccgc
      541 ttcggggtgg ctcaggcgct gggatcggtt tccacccaga ccgtctacga cgtgctggcg
      601 gcctgcaccg ccgcggggca ggtgcgccgg atcgaaccgg ccgggcatcc tgctcgattc
      661 gagtgccggg cgggagacaa tcaccaccac gtggtgtgtc gctgctgcgg gcgccccgaa
      721 gacgtcgact gtgccgttaa cgtccggccg tgcctgacgc ccagtgacgg tcacgggtac
      781 ctgctcgacg aggccgaggt ggtgttctgg gggacctgcc aggcgttcgg ctcggacgct
      841 gatggccccc aatgaccccc taatgacatg gcaagaacca tccactacac gaggaggcac
      901 ggtagtgacg agctcgcagc ccaagcctac gacgacagat gccggtatcc cggtcgcgag
      961 tgacgagcac tcgctcaccg tcggcccgga cggtccgatc ctcctgcagg atcattacct
     1021 gatcgaacag atggcgcagt tcaaccggga gcgcatcccg gagcgccagc cgcacgccaa
     1081 gggtggcggc gccttcggcc ggttcgaggt gaccaacgac gtcagcgcct acacaaaggc
     1141 cgcggtgttc cagccgggca ccaagaccga catggtggcc cggttctcga ccgtggccgg
     1201 cgagcgtggt agcccggaca cctggcgcga tccccgcggc tttgccctta agttctacac
     1261 caccgagggc aattacgaca tggtcggcaa taacacgccg atcttcttcg tcaaggaccc
     1321 gatgaagttc cagcacttca tccgttcgca gaagcggcgc gccgacaata atttgcgtga
     1381 ccatgacatg cagtgggact tctggacgct gtccccggag tcggctcacc aggtcacctg
     1441 gctgatgggt gaccggggga tcccgcgcac ctggcggcac atgaacggct attccagcca
     1501 cacctatatg tgggtcaacg cgggcggcga gaagttctgg gtcaaatatc atttcaagac
     1561 cgaccagggt atcgagttct tcacccagaa cgaggcagac cagatggcct cgatggacac
     1621 tgattaccac cagcgtgacc tgtacgagca catcgcggcg ggcgagttcc cgagctggac
     1681 gctcaagatg cagatcatgc cgttcgatga cgccgcgaat taccggttca acccgttcga
     1741 cctgaccaag gtgtggccgc acggcgacta cccgctcatc gaggtcggcc ggatgacgtt
     1801 ggaccgcaac ccgaccgact atcacaccga gatcgaacag gccgcgttcc agcccaacaa
     1861 cctcgtgccg ggcatcggcc ccagcccgga caggatgctg ctggcccggc tgttcgccta
     1921 cgccgacgca caccgcgctc gcatcggcgg caactaccag cagctgccgg tgaacgcgcc
     1981 gaaatcgccg gtgtacagct acagcaaaga cggcgcgatg cgctaccaca acgtgtcgga
     2041 tccggtgtac gcgccgaact ccaagggcgg accgagggcg gacaccgcgc gctacggtga
     2101 gtcagcggga tgacacaccg ggggggagtt ggggcacagc ccgtaccccc tccacgccga
     2161 ggatgacgac tggggccagg ccggcaccat ggtccgagag gtgctcgacg acgcggcccg
     2221 cgagcggctg gtgaacaacg tcgtcggcca tctgctcaac gccgtgaccg agccggtcct
     2281 gcaacgggcc ttcgagtact ggcgcaatgt ggacaagggt ctgggtgacc ggatcgagca
     2341 gggtgtgcgt gccaagcagt ccgaggtgga cccgaaggcg gctgagcagg cgaatccggc
     2401 gcgttcggct gcgcaagcca aggcctgagc attcggagga agtcgagggc ccggcacgct
     2461 gggggtgccg ggccctcgcg cgtctgccgg ggcttattca ttcgggagcc ggagcctcgc
     2521 cgtagggtcc gtggtatggg gctcaccgtg gtcggcatcg gtggctcgat gcgcgacgat
     2581 tctcagtccg agcgggcact gagcgtcgtg ttgcagggcg ccgaggttgc cggcgcggag
     2641 accgtcgcga tcaccggtcc ggagctggta ctgccgttct acgaccctgc ggtgcttgaa
     2701 cgcagcgcgg tggcgttgcg gctggtgcag gcgttacgcg aggctgacgg ggtggtgctg
     2761 gtctcgccgg gctatcacgg caccgtgtcg ggcttggtga aaaacgcact ggactacgtc
     2821 gaggacctcc gggccgattc ccggccttac ctggacgggc gggcggtcgg ctgcgtggcg
     2881 atggcgctgg gctggcaggc ggcggtgacc acgctgaccg cgttgcgttc gatcgtgcac
     2941 gcgctgcgcg gctggccaac gccgctgggc gcggcgctca actccgccga ggtgagcttc
     3001 gacgaccagg gcgtcccctc cgatgccgcg gtcgagcgca ccctgcgcac gataggtgag
     3061 caggtggtgc agttcgccct cgatcaccgt gcgagagggg ctaggccatg ctgacctggg
     3121 tcggcgtcgt cgggagaggt tcctcggctt gcagggttgc cgtgacccgc agcaagcctc
     3181 cttccagccg gccgcggggg cgcagtccgg ccctgcgcag gacccgggtc agcgccccgt
     3241 tacccacttg ggagactgca acgatctcgg tgagctgctc acctcgagcc agctccacga
     3301 gtttgcgggc caacgccgtg cccactcctc tgccctgcca ggcgtcctcc accagcagcg
     3361 ctaattctgc cgtgctgggt gcggcacgga ccaggtttgc cagcccgacg gcggccccac
     3421 catcggtggt caccgcgagc aggctggtgg agccgtccgt gccgatcaac tgctgaagca
     3481 cagccgctgc c
//
LOCUS       DASVXZ010000649         2685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1774742, whole genome shotgun sequence.
ACCESSION   DASVXZ010000649 DASVXZ010000000
VERSION     DASVXZ010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1774742"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..865)
                     /gene="yhjD"
                     /locus_tag="VF788_13610"
     CDS             complement(<1..865)
                     /gene="yhjD"
                     /locus_tag="VF788_13610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HEX8935195.1"
                     /translation="MRGIFERFRLRYPWLDHLVRAGQSYTAHHGDHYAAAITFFSVLS
                     LVPMMMIAFATAGFILADNPELLRQLQDQIQSAAPAGLGGTLNGIIEGAIASRRGVGI
                     VGLLGALYSGLGWMSNLREALTAQWRGGEEPPEPEGFLRTKVFDLLALLGLGVALVTS
                     FALTGIGTGFATAVLQAIGLGKMPGARLVLTGLAVVASVIGMWLVFLWVIARLPRQPV
                     PLRRAMRAAWFGAIGFEILKQAFAIYLDSVTASPTGQLFGPVIGLMVFAYFVSRFLLF
                     LTAWAAVGAGSE"
     gene            complement(896..1924)
                     /gene="trpS"
                     /locus_tag="VF788_13615"
     CDS             complement(896..1924)
                     /gene="trpS"
                     /locus_tag="VF788_13615"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEX8935196.1"
                     /translation="MPSAVTERRPRVLSGIQPTADSYHLGNYLGAIRQWVALQADHDA
                     FYCVVDLHAITAAPQEPVKLRRRTRLAAAQMLALGVDPDRSTVFVQSHVPEHTQLSWV
                     LECLTGFGEASRMTQFKDKSAKQGGDRVGVGLFTYPILQAADILLYQADQVPVGEDQR
                     QHIELTRDLATRFNSRYGPTFTVPAPHIVKGAEKIYDLVDPTAKMSKSASSPAGVIDL
                     LDDPKVSAKKIRSAVTDTGREVQYDPATKPGVSNLLVIYSALSGRSIDDLVAAFAGQG
                     YGALKSEVAEALADFVTPLRQAVAGYTDDPAELDKLLARGAERAREVAAETVRAVYDR
                     MGFLPPTG"
     gene            complement(1972..2322)
                     /locus_tag="VF788_13620"
     CDS             complement(1972..2322)
                     /locus_tag="VF788_13620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEX8935197.1"
                     /translation="MAWTKQRYVVGGVIAVGVLLLISEHGNQPITGWGTGTSGGSSTS
                     VPSGARPCTVTVTADLLNARSSPDGNAPVVETYRRGEVMSADRTTTNGFRQLAPDRWV
                     AQEFVEPTAGSDCG"
     gene            complement(2363..>2685)
                     /locus_tag="VF788_13625"
     CDS             complement(2363..>2685)
                     /locus_tag="VF788_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005447199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEX8935198.1"
                     /translation="RTVEAEAAHGTVTRHFRQHQQGKPTSTNPIASVFAWTGGLRHRG
                     MLDATPEVTRFAQTLEWVCVNTVERGKVTKDLALMIGPDTPYLTTEAFLDELDRGLRH
                     ATGL"
BASE COUNT          473 a          911 c          859 g          442 t
ORIGIN      
        1 cctcactgcc tgcgccgacg gcggcccagg cagtgaggaa caacaggaac cgggagacga
       61 agtaggcgaa caccatcagc ccgatcaccg ggccgaacaa ctgtccggtg gggctggcgg
      121 taacgctgtc cagatagatg gcgaaagcct gcttcaagat ctcgaaaccg atcgctccga
      181 accacgcggc acgcatcgcc ctgcgcagcg gcacgggctg tcgcggcagc cgggcgatca
      241 cccagaggaa caccagccac atgccgatca ccgacgccac cacggcgagg ccggtcaaca
      301 ccagccgggc acccggcatc ttccccaggc cgatcgcttg cagcacggca gtagcgaacc
      361 cggtccctat gccggtcaat gcgaaagacg tcaccaacgc cacacccaga ccgagcagcg
      421 cgagcaggtc gaacaccttg gtgcgcagga aaccctcggg ttccggcggc tcctccccgc
      481 ctcgccattg agctgtgagc gcctcgcgga gattgctcat ccagcccagc ccggaataca
      541 gcgcccccag cagacccacg atcccgacac ctctgcgaga tgcgatcgcc ccctcgatga
      601 tcccgttgag agttccgccc aagcccgcag gcgccgccga ctggatctga tcctgcaact
      661 gacgcagcag ctcggggtta tcggccagga tgaaacccgc ggtcgcgaag gcgatcatca
      721 tcatcggcac cagcgatagc acgctgaaga aggtgatcgc cgctgcgtag tggtcgccgt
      781 ggtgggcggt gtaggactgc ccggcgcgca ccagatgatc cagccacggg tagcgcaacc
      841 ggaagcgctc gaagatcccc ctcatgcccc atcaggctag tcggcaactg cggattcagc
      901 ctgttggcgg caggaaaccc atcctgtcgt acaccgcacg taccgtttcg gcggcgactt
      961 cgcgggcccg ctcggcgccg cgagccagca gcttgtccag ttccgccggg tcgtcggtgt
     1021 agccggccac cgcctggcgc agcggggtga cgaaatcggc gagcgcctct gcgacctcgg
     1081 acttcagcgc accgtatccc tggccggcaa aggccgccac gagatcgtcg atgctgcggc
     1141 cggataacgc cgagtagatc accagcaggt tcgacacacc tggtttcgtc gccgggtcgt
     1201 actggacctc acgaccggtg tcggtgaccg ccgagcggat cttcttggcg gacaccttcg
     1261 ggtcatccag taggtcgatc acaccggccg gcgaggacgc cgacttgctc atcttcgccg
     1321 tcgggtcaac gaggtcgtag atcttctcgg cacccttgac gatatgcggt gcgggaaccg
     1381 tgaacgtggg gccatagcgg ctgttgaacc gggtagcgag atcccgggtg agttcgatgt
     1441 gttggcgttg gtcctcgcct actggcacct ggtcggcctg atagagcagg atgtcggcgg
     1501 cctgcaggat cggataggtg aacaacccga cgccgaccct gtcgccaccc tgcttggctg
     1561 acttgtcctt gaactgggtc atccgggacg cctcaccaaa gccggtaagg cattccagta
     1621 cccacgacag ttgagtgtgt tcgggaacgt ggctctgcac gaaaaccgtg gaccgatccg
     1681 ggtcgacacc caaggccagc atctgcgccg cggccaaccg ggtgcgccgt cgcagcttga
     1741 ccggctcctg cggggcggcg gtgatcgcat gcaggtcaac cacgcagtag aacgcgtcgt
     1801 ggtcggcctg gagcgccacc cattgccgga tggcaccgag gtagttgccg aggtggtacg
     1861 agtcggcggt gggctggatg ccggacagta cccggggacg acgctcagtc acagcagacg
     1921 gcatggtgga attgttgcag cccgcacgcg gcgagttcat ccggattagc ctcaaccgca
     1981 gtcgctgcct gccgtcggct ccacaaactc ctgcgcgacc caccggtccg gcgcgagctg
     2041 ccggaaaccg ttggtcgttg tccggtcggc cgacatgact tcccccctgc ggtaggtctc
     2101 cacgaccggg gcgttgccgt caggactgga ccgtgcgttg agcaggtctg cggtgaccgt
     2161 caccgtgcac ggtcgcgcgc cgctgggcac gctggtgctg ctgcccccgc tggtgccggt
     2221 gccccatccg gtaatgggct ggttgccatg ttcggagatc agcagcagga cgcccaccgc
     2281 tatgactccg ccgacgacat accgctgctt cgtccacgcc acctgatcac tctccgccgt
     2341 ctaggctgtg atcatctcat tgtcacagcc cggtggcgtg ccgcaacccc cgatcgagct
     2401 cgtcgaggaa ggcctcagtg gttaggtacg gcgtgtccgg accgatcatc aacgccagat
     2461 ccttggtcac cttgcccctc tccacggtgt tgacgcagac ccactccaag gtctgggcaa
     2521 accgggtgac ctccggggtg gcgtccagca tgccgcggtg gcgcaggcct ccggtccacg
     2581 cgaaaaccga cgcgatcggg ttggtcgagg tcggttttcc ctgctgatgc tgccggaagt
     2641 gccgggtgac ggtgccgtgc gcggcctcgg cctcgacggt ccgcc
//
LOCUS       DASVXZ010000650         2667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_431760, whole genome shotgun sequence.
ACCESSION   DASVXZ010000650 DASVXZ010000000
VERSION     DASVXZ010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2667
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431760"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VF788_13630"
     CDS             <1..753
                     /locus_tag="VF788_13630"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935199.1"
                     /translation="SAVRDQPPDSPGSPTFSLDGREMSDSIGTVPRMIEPCYLRATRA
                     GYDAVAADYAEWVSDHLAAQPLDRALLAAFAELVHADGAGPVGDLGCGPGRVTAHLRC
                     LGLSAFGVDLSPAMVALARRAYPDLRFDEGSLTAVDAADGALGGIVAWYSIIHTPPEE
                     LPMVFAEFRRVLAPGGHLLLAFQVGDEPLRLAEAFGHVVSLDFYRLQPDRVTQWLGET
                     GLAVLARLLREPEETEKVQQAYVLARKPPMTV"
     gene            complement(784..1173)
                     /locus_tag="VF788_13635"
     CDS             complement(784..1173)
                     /locus_tag="VF788_13635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003082494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HEX8935200.1"
                     /translation="MDDPTEPAGLSPAQQRAAKELINEERARTVRLIDSLMRQWDGIV
                     EASALTTNDDEHDPEGATVAFERAQVQAMLRHARVDLEDLDRAAQRVATGEYRVCERC
                     GSPISADRLTARPAARICITCANKITR"
     gene            complement(1554..>2667)
                     /locus_tag="VF788_13640"
     CDS             complement(1554..>2667)
                     /locus_tag="VF788_13640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEX8935201.1"
                     /translation="QPDLNWRNPEVHAEFEDILRFWLDHGVDGFRIDVAHGLIKDSTL
                     PDLGTGHEDLIEPPNRTDHPHWDRPEVHDIYRSWRRIAESYGGDRIFVAEAWVDTPDR
                     LARYVRPDELHTAFNFDFLRSPWQPDSLRSVIESNMNALDAVGAPAIWVLSSHDVTRH
                     LTRYGRPHTRAAGPHHEVLEPVDLELGARRARAALLLMLALPGSTYLYQGEELGLEEV
                     EDLPEEVLQDPTWHRSGHTVRGRDGCRVPLPWRDPVPPFDFTRDGVQPWLPQPRHWAA
                     RTVQAESDDPSSMLSLYRDALALRHSLEALGAGEMSWLDSPSEVLLFRRGDELACAVN
                     LGEQPWDLPEHKRILLASATLQDGKLAPDTAAWLEV"
BASE COUNT          421 a          887 c          885 g          474 t
ORIGIN      
        1 tcggctgtac gggaccagcc acccgactcc cctggttcgc caaccttttc cctggacggc
       61 cgcgagatgt cagactcgat cggtacggtg cctcgcatga tcgagccgtg ctacctgcgc
      121 gccactcggg cgggctacga cgccgtcgcc gccgactatg ccgagtgggt cagcgaccat
      181 ctcgccgccc agcccttgga ccgtgcgctg ctggccgcgt tcgccgagct cgtacacgct
      241 gacggcgccg ggccagtggg tgatcttggg tgcggacccg gtcgggtgac ggcgcacctg
      301 cgttgtctcg ggttgagcgc cttcggtgtc gacctgtcgc cagcgatggt tgccttggcc
      361 cgacgcgcgt acccggacct gcggttcgat gaaggctcgc tcaccgctgt ggatgcggct
      421 gatggtgctc tcggcggcat tgtggcgtgg tactccatca tccacacgcc accagaagaa
      481 ttgccgatgg tgttcgccga gttccgtcgt gtactggcac cgggcggaca cctgttgctc
      541 gccttccaag tgggcgacga gcccctccgt ttggcggaag cattcggcca tgtggtgtcg
      601 ctcgacttct accggttgca gccagatcga gtcacacagt ggttgggtga aaccgggctt
      661 gctgtgttgg cccggctatt gcgcgagccc gaggagaccg agaaggtcca gcaggcctac
      721 gtcctggccc ggaaaccgcc gatgaccgtc tgaaccgcca tcggctttcc gttcccgggc
      781 tcgtcacctg gtgatcttgt tcgcgcacgt gatgcagatc cgcgccgctg ggcgggcggt
      841 aagccggtct gcggagatcg gacttccgca gcgctcgcac acccggtact caccggtcgc
      901 tacccgctgg gcagctcggt cgagatcctc aaggtcgacg cgtgcgtgcc tcagcatggc
      961 ctgtacctgg gcccgttcga acgcgaccgt ggcgccctcc ggatcatgct catcgtcgtt
     1021 ggtggtcagg gctgacgctt cgacgatgcc atcccactgg cgcatcaacg agtcgatcag
     1081 ccgcaccgta cgagcgcgtt cctcgttgat caactctttt gcggcccgct gctgcgctgg
     1141 tgaaagccca gcaggctcgg tgggatcgtc cacgacaagc ccaactaaac gcgcgagcta
     1201 cccattccag caaccccagc agcgcgtgga gccggtgtgc aaggcgcgtg tggggcgggc
     1261 cgtccgcgaa ggcgccatct ggggaatccg cgtcggatgg tctccatatc aggcggtaac
     1321 cgccgccgcc tggagctggc tgcagcctgc tgctcaccat gcctggtacg ccagtcatcc
     1381 gctacagcga cgaaatcggt atgggcgatg acctgtcgct gcctgagcgc gagtccgttc
     1441 gaacgccgat gcagtggacg gacacgccca acggggaatt ctcccgtgcc gagccgggcc
     1501 gcgatcaacg gctatggcca tcactggctg cggctccacc acaccccatg ggtttagacc
     1561 tcgagccagg ccgcggtgtc cggtgcgagt ttcccgtcct gcagggtcgc actcgcgagc
     1621 aggatccgct tgtgctcagg cagatcccac ggttgctcac cgaggttgac agcgcacgcc
     1681 aattcatccc cccggcggaa taacagcacc tcggacggcg agtccagcca cgacatctcg
     1741 ccggcaccga gcgcttcgag cgagtggcga agcgccagcg cgtcgcggta cagggaaagc
     1801 atcgagcttg ggtcgtcgga ctccgcctgg acggtgcgcg ccgcccagtg tcgtggttgc
     1861 ggcaaccacg gctggacgcc gtcgcgggtg aagtcgaaag gcggaaccgg atcacgccac
     1921 ggcagaggaa cgcggcaccc gtcgcgcccg cgaacggtat gaccggatcg atgccaggtg
     1981 ggatcttgca gtacttcctc cggcaaatcc tccacctcct caagaccgag ctcctcaccc
     2041 tggtagaggt aggtgctgcc gggcagtgcg agcatgagca gcagcgccgc ccgtgccctg
     2101 cgggcgccca gttcgaggtc gaccggttcg agcacctcgt ggtgcggtcc cgccgctctc
     2161 gtgtggggcc gtccgtagcg cgtcagatgc cgtgtcacgt cgtggctgga cagcacccag
     2221 atcgcgggcg cgccgaccgc gtcgagcgcg ttcatgttgg actcgataac ggagcgcagc
     2281 gagtcgggct gccaggggct ccgcaggaag tcgaagttga acgcggtatg cagctcgtcg
     2341 ggccggacgt agcgggccag tcgatccggc gtgtccaccc acgcctccgc gacgaagatc
     2401 cgatcgccgc cgtaggactc ggcgatccga cgccaggagc ggtagatgtc atgcacttcc
     2461 gggcggtccc agtgcgggtg gtccgtccgg ttcggcggtt cgatcaggtc ctcgtgacca
     2521 gtgccgaggt cgggcaaggt ggaatccttg atcaggccat gcgccacgtc gatgcggaat
     2581 ccatccacgc cgtgatcgag ccagaaccgg aggatgtcct cgaattcagc gtgcacctct
     2641 gggttgcgcc agttcagatc cggctgc
//
LOCUS       DASVXZ010000651         3141 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_933258, whole genome shotgun sequence.
ACCESSION   DASVXZ010000651 DASVXZ010000000
VERSION     DASVXZ010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_933258"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VF788_13645"
     CDS             <1..321
                     /locus_tag="VF788_13645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935202.1"
                     /translation="NPPGGLVDLTETGTGLYWFTGSVTIALDTDELRPRWVLPGSLGA
                     GTEVAGRLLVPVSGALAILEPSTGAQVGALPVDRGGYRGPVETASSSGVVLEQRGDTL
                     VALR"
     gene            complement(399..686)
                     /locus_tag="VF788_13650"
     CDS             complement(399..686)
                     /locus_tag="VF788_13650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935203.1"
                     /translation="MTALRSSGRATRGLSGVLAGGLVALAIVMCLAQWLAGNSGSPGP
                     GAAVVVGHLLAALAAVVLQVAAERSGGRTAVLASWSVLVLAAAVLWFGWWA"
     gene            complement(683..1528)
                     /locus_tag="VF788_13655"
     CDS             complement(683..1528)
                     /locus_tag="VF788_13655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEX8935204.1"
                     /translation="MTRQAQGELDLGGLPRPLVRVTPAKLAAWTGCPRRYRMAYVDRP
                     APARGGAWAHNTLGAVVHTALRALFDLAPARRGPHAAAALVATHWSGEGFADDAQAAD
                     YRGRAQEWVARYVEELDPHLDPVGVERWVSAPTRRIVAEGRVDRLDERDGELVVVDYK
                     TGRHGLTVDDARGSQALALYAFAARRTLRRECRRVELHHLPTGTVAGWDHTEQSLGRH
                     LQRAEEAADEIALVTDTLKTGGDPEVLFPPVPGRACSWCDFRRHCPEGRASAPDLQPW
                     ALLAP"
     gene            complement(1572..2438)
                     /locus_tag="VF788_13660"
     CDS             complement(1572..2438)
                     /locus_tag="VF788_13660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009152648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEX8935205.1"
                     /translation="MRIDLHAHSSVSDGTDTPTQFVLAAAAAGLDVVALTDHDTTAGW
                     AEAVAALPAGLRLIRGAEFSCVAMDSEGRRISVHLLGYLFDPTSEIIIAEQSRLRDER
                     RSRLRAMAARMAMDGFPVDPDAVLAALAPDAPAGRPHLARALVSAGIVGSVDEAFQRY
                     LGAGGPYYIARADTDVRTAVRMVRAAGGVPVLAHPAARRRGPVVDPAVITELAAEGLA
                     GVEVDHPDHGGEDRAALRDLAAALDLVITGSSDYHGRNKTVSLGQETTHPEALERIED
                     LAAHSHVNTVTG"
     gene            complement(2470..3054)
                     /locus_tag="VF788_13665"
     CDS             complement(2470..3054)
                     /locus_tag="VF788_13665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009072960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX8935206.1"
                     /translation="MIGRHSNVLLNPALERRVIRVRRHWAVLILPLAKTAGVVVVAMW
                     LSWLISGMPGMWLPQSLLWYAAVFALLYFAWQVLEWWVEVVIVTDKRFMITSGIIETK
                     NSMMPITKVTDMSFMRPWHGQILGYGTLRVESAGQKQDLETVKFLPRPEEVFLAISEL
                     IFGDKKQPRSHMLEQSRSGKRRKWRSRPRWSDTE"
BASE COUNT          557 a         1126 c          977 g          481 t
ORIGIN      
        1 aatccacctg gtggcctggt cgacctcacc gagacgggga ccgggctgta ctggttcacc
       61 ggctcggtca cgattgcgct ggacaccgac gagctgcgac cacggtgggt cctccccgga
      121 tccctgggag ccggcacgga ggtcgccggg cggctgctgg tgccggtgtc aggagcattg
      181 gccattctgg aacccagcac cggtgcacag gtcggcgcgc tgccggtaga ccgtggcggc
      241 taccgcggcc cggtggagac cgccagctcc agcggtgtcg tgctcgagca acgcggtgac
      301 accctggtgg ccctgcgctg agcactgctg ggccatcgcc cagccaagga agcctcatga
      361 gccacgatcg ccagctcggt cgaatcgcgc tgctcggctc aggcccacca gccaaaccag
      421 agcacggccg ccgcaagtac cagcaccgac caggatgcca gcaccgcagt gcgtcccccg
      481 gatcgctcgg ccgctacctg caacacaacg gcagccagcg cggccagcag atgaccgacg
      541 accaccgccg cgccggggcc gggagatccc gagttaccgg ccaaccactg agccaggcac
      601 atcacgatcg ccagcgcaac gagaccacct gccagcacgc cggagagccc gcgggtggcc
      661 cggccactgg agcgcagcgc ggtcacggag cgagcagcgc ccacggctgg agatctggtg
      721 cgctggctcg cccctctggg caatgccgac ggaaatcaca ccacgagcag gcccgaccgg
      781 gcacgggcgg gaacaggact tccggatcac ctcccgtctt cagggtgtca gtgaccagcg
      841 cgatctcgtc ggcagcttcc tccgcgcgct gcaggtgcct gcccagcgac tgctcggtgt
      901 ggtcccatcc ggcgacggtg ccggtcggca ggtgatgcag ttcgacccgg cggcactcgc
      961 ggcgcaaggt acgccgggcc gcaaacgcat agagcgccag cgcctgtgag ccccgagcgt
     1021 catcgacggt gaggccatgg cggccggtct tgtaatccac cacgaccagc tcgccgtccc
     1081 gctcgtcgag gcggtccacc cggccctccg cgacgatccg ccgggtcggt gcggagaccc
     1141 accgctccac ccctaccgga tcgagatggg gatccagctc ttcgacatag cgggctaccc
     1201 attcctgggc acggccgcga tagtcggcag cctgcgcgtc gtcggcgaaa ccttccccag
     1261 accagtgcgt agccaccaga gcagccgcag cgtgcgggcc gcgccgcgcg ggtgccagat
     1321 cgaacaacgc tcgcagcgcc gtgtgcacca cggcacccag cgtgttgtgc gcccatgcgc
     1381 cgccacgcgc gggtgcgggc cgatcgacgt aagccatccg gtaccggcga gggcaaccgg
     1441 tccaggcggc gagcttggca ggagttaccc gcaccagtgg tcgcggaaga cctcccaggt
     1501 ctagttctcc ctgcgcttgc cgtgtcatca cgcgtaccgt acccatccgc tgcgccagtc
     1561 cagctgccag ttcacccggt cacggtgttg acgtgactat gcgcggcgag gtcctcaatc
     1621 cgctccagcg cctccggatg ggttgtctcc tggcccagcg acacagtctt gttccggccg
     1681 tggtaatcgc tggagccggt gatcaccaag tccagtgcgg ccgcgaggtc acgcaacgca
     1741 gctcggtcct cgccaccatg atcggggtga tcgacttcta ccccggccag cccctccgca
     1801 gcgagctcag tgatcaccgc agggtcgacc accggcccac gccggcgggc tgcagggtgt
     1861 gccagcaccg gaaccccacc tgcggcgcgc accatccgga cggccgtgcg gacatccgta
     1921 tcggcccgcg cgatgtagta cgggccacca gcacccaggt accgttggaa agcctcatcg
     1981 acgctaccca cgattcctgc tgacaccagc gcccgagcca gatgcggacg gccggctggt
     2041 gcatccggcg cgagcgcggc aagcaccgcg tccggatcaa ctggaaagcc gtccatagcc
     2101 atccgagctg ccatggcgcg cagcctcgaa cgtcgttcgt cccgcagccg ggactgttcg
     2161 gcaatgatga tctctgaggt cggatcgaac aggtatccca gcagatgcac cgagatccgc
     2221 ctgccttcgc tatccatcgc gacgcaggag aactcggcac cccggatcag ccgcagtcct
     2281 gcgggcaagg ccgcaacggc ttcagcccat cccgctgtgg tgtcgtgatc ggtgagcgca
     2341 accacgtcaa gaccggctgc agccgcggcc aagacgaact gggtgggggt atccgtccca
     2401 tcggacacgc tggagtgagc gtgcaggtcg atacgcacga atgccggttc cctcaggcca
     2461 gcgcaaacgt cattcggtgt ccgaccatct cgggcgtgat ctccacttgc ggcgtttgcc
     2521 gctgcgcgac tgctccagca tgtgcgaacg gggctgcttc ttgtcgccaa agatcaattc
     2581 ggagatggct aggaagacct cctcaggcct gggcaggaac ttgaccgtct caaggtcctg
     2641 tttctgcccg gctgactcca cccgcagcgt gccgtaaccc agtatctgtc cgtgccacgg
     2701 ccgcatgaag ctcatgtccg tcactttcgt gatcggcatc atagagttct tggtttcgat
     2761 gatgccacta gtgatcatga accgcttgtc ggtgacgatg acgacctcga cccaccactc
     2821 cagtacttgc caggcgaaat acagcaacgc gaagaccgcc gcataccaaa gcagcgactg
     2881 cggcagccac atccctggca tcccgctgat cagccaggac agccacatcg cgaccaccac
     2941 gaccccagca gtcttcgcca acggcaagat cagcactgcc caatgccgcc gtacccggat
     3001 cacccgccgc tccagggcgg gattgagcag gacgttggaa tgtcggccaa tcatgtcagc
     3061 gctacctgcg gcgtctttgc cctcaccgtg acctacctgt ctcgccgctg cagctagcgg
     3121 acgtcgccat cgttgcgcaa t
//
LOCUS       DASVXZ010000652         4142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1380503, whole genome shotgun sequence.
ACCESSION   DASVXZ010000652 DASVXZ010000000
VERSION     DASVXZ010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1380503"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VF788_13670"
     CDS             <1..402
                     /locus_tag="VF788_13670"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8935207.1"
                     /translation="TELITLTPPLELTLHHPTVGVCVVAVNGELDMRSAPLLDTCVRE
                     QLAAAPTHLILDLQPVRFLAASGLTCLIRARELAQQTPGSKLHLAGLLSRTVARSLEI
                     TGLLAVFDTYYTLAEALTVLTGPQRTTDAAQ"
     gene            complement(405..2510)
                     /locus_tag="VF788_13675"
     CDS             complement(405..2510)
                     /locus_tag="VF788_13675"
                     /inference="COORDINATES: protein motif:HMM:NF013173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HEX8935208.1"
                     /translation="MTETAEPSRNTLACTTENSCAKILAADLDGTLLGADARDRWWLH
                     TALGRHPEVTIVFATGRGLAAVREALRDPLLPRPRWIIADIGATVLDGTDLSAVEPLQ
                     TRLRAGWPGTERVRAALDRFPTLKYQHNVAQDGRCSFYLHPEQLTTDITDAVAALGCR
                     WIYSADRYFDVLPRGASKGSALSALAQLQGWTMDSILVAGDSLNDLSLFALGAHGVIV
                     GNAEPALSSAVPAQDRVYRFPQPGAGGVLRALQHLGWVETRYPLVIGYHRPPVNWTPE
                     HGWHKPTSPNGILPTLNSLFTNDLRAVWVAGGIIEDEAQLAHLNEHDTGIPLSFVPLA
                     PQQWSGYFHRTCKEALWPLLMSQPERMRFDPAAWAHYRAVNERFAHHIANAASPHATV
                     WLHDYNLWLVPGLLRSTRPDLKIGLFHHTPFPPLKVFAALPTAPEIRTSLRCLDWAGF
                     HTATFARRFRRAVIDRPRLPRIGVHPLGIDRNAIEALAQDRAHRIKPVAETLVLSVER
                     LDYVKAPLEKVEAIAALLTRHPELRRRLLFRFVCAPPDPGITAYNATKQALEHRIAQV
                     NRGWRVGDWEPIEYLPRALSFTEVIDSYLAADVFWVTSLQDGMNLTAKEFIAAQAAVG
                     GSGVLVLSRHTGAAEQLGPAALLTDPHSPEDLINKLVLALALPPRERRARLRCLAELL
                     GHHPPSTWASQIISAIRGA"
     gene            2829..3080
                     /locus_tag="VF788_13680"
     CDS             2829..3080
                     /locus_tag="VF788_13680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935209.1"
                     /translation="MSYGHYTSQLSQQGALLIGSWHERGYQAAVLVPTPRVAEVLGGR
                     VHDMGTGPGIYGIRAAALARAENDGDGRGLEYLAYRLSR"
     gene            3077..4006
                     /locus_tag="VF788_13685"
     CDS             3077..4006
                     /locus_tag="VF788_13685"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEX8935210.1"
                     /translation="MKPVAGRRTGGLVLVAGAYSVDLVFGDLAGPVALGSEVWSQTLG
                     IVPGGAFTLASGLRRLGREVVWAADFGTDVFSRETLAAARAEGLDERGFRHHARPVRN
                     VTVVLTNPQDRAMIAYEDPVTPRPLGELVATYRPAVVMLPYLQYGAEVSTALDMAARQ
                     GAQVFMDCQDYAGHISMPEVQKILSQVQVFAPNETEALRITGAGSVEEALDVLANFVP
                     TVVIKRGGNGAVAAENGQRVVQASPPVPVVDTTGAGDCFNVGFLHRRLEGGSLIECLA
                     AGVVCGAAAVTSAGSSSALDATSLETWLSRLPT"
BASE COUNT          726 a         1227 c         1435 g          754 t
ORIGIN      
        1 accgagctga tcacgctgac gccgccgctc gaactgaccc tgcaccaccc caccgtcgga
       61 gtatgcgtgg tggcggtgaa cggagagctg gacatgcgca gcgccccgtt actcgacaca
      121 tgcgtacgcg aacagctcgc cgccgccccg acgcacctaa tcctggacct gcaaccagtg
      181 cgcttcctgg ccgccagcgg tttaacctgc ctgatccgcg ctcgggaact cgcccagcag
      241 acccccggat cgaaactgca cctcgccggt ctgctcagcc ggaccgtggc gcgctcactt
      301 gagatcactg ggctgctggc agtgttcgat acctattaca ccctggccga ggccctgacc
      361 gtactgaccg gtccgcaaag gacgactgac gcggcgcagt gagctcatgc gcctcggatg
      421 gcggaaatga tctgcgacgc ccaggttgat ggtgggtggt gtcctagtag ctcggcaaga
      481 cagcgcagac gtgctcgtcg ttctcgaggg ggcagcgcta gagcgagcac cagtttattg
      541 atgagatcct ctggtgagtg cgggtcggtg agcaacgctg cggggccgag ttgttcggct
      601 gcgccggtgt ggcgggagag caccagtacg ccggatccac ccacagctgc ttgcgcggcg
      661 atgaattcct tggcggtcag gttcatgccg tcctggagtg aggtgaccca gaaaacgtcg
      721 gctgcaagat agctgtcgat cacctcggtg aaggacaaag cgcgaggcaa gtattcgatg
      781 ggttcccagt cgccgacgcg ccagcctcgg ttaacctgcg cgatgcggtg ttcgagcgcc
      841 tgtttggtcg cgttgtaggc ggtgattccg ggatcgggtg gggcgcatac gaatcggaac
      901 agtaggcgtc ggcgtaattc agggtggcgg gtgagcaagg ccgcgatggc ctcaaccttt
      961 tccagcgggg ctttgacgta gtcgagacgt tcgacggaca gtaccaacgt ttcagctacc
     1021 ggctttattc ggtgggcacg gtcctgggct agcgcctcga tggcattacg gtcgataccc
     1081 agcggatgga caccgatgcg cggcagccgt ggcctatcga tgacagcgcg gcggaatcgc
     1141 cgagcgaagg tggcggtatg aaatcccgcc cagtccagac atctcagtga tgtgcggatt
     1201 tccggggcag tgggcaaggc agcgaagact ttcaatggcg ggaaaggtgt gtggtggaaa
     1261 aggcctatct tcaggtctgg gcgggttgat cgaaggaggc cgggtacgag ccagaggttg
     1321 tagtcatgca gccacacggt cgcgtgtggg cttgccgcgt tggcgatatg gtgggcgaag
     1381 cgctcgttga ccgcgcggta gtgtgcccac gcggccgggt cgaaacgcat tcgctcgggc
     1441 tgggacatga gcaggggcca cagagcctct ttgcacgtgc ggtgaaaata cccactccac
     1501 tgctgagggg ccagcggaac gaacgacaac ggtatcccag tatcatgttc gttgaggtga
     1561 gcgagttgtg cctcgtcttc aatgatccct ccagcgaccc agaccgcgcg caggtcattg
     1621 gtgaacaggc tgttgagggt gggcaggatg ccgttggggc ttgtcggctt gtgccagcca
     1681 tgctccggcg tccagttcac cggggggcgg tggtaaccga tcaccagtgg gtagcgagtt
     1741 tccacccagc ccaggtgctg tagcgcccgc agcacaccgc cggcacccgg ctgtgggaac
     1801 ctgtacaccc tgtcctgggc aggcactgcg gaggacagcg cgggttcggc gttgccaacg
     1861 attacgccat gcgcgccgag cgcgaacagc gacaagtcat tgaggctatc tccggcaacc
     1921 aagattgaat ccatagtcca gccctgcagt tgagccaggg ctgatagggc gctgcctttg
     1981 gaggcgccgc gcggcagcac gtcgaagtat cgatctgccg agtagatcca ccgacatccc
     2041 agcgccgcca cagcatccgt gatgtctgtg gtgagctgtt ctggatgcag ataaaacgag
     2101 cagcggccgt cttgggcgac gttatgttgg tacttcagcg tggggaagcg gtctagcgcg
     2161 gcgcgcaccc gctcggtccc gggccaacca gcgcgcagcc gggtttgcag cggctcaacc
     2221 gcggataggt cagtaccgtc gaggactgtg gcgccgatgt cggcgataat ccagcgaggc
     2281 cggggcagca ggggatcgcg cagcgcctcg cgcacggcgg cgagcccgcg acctgttgcg
     2341 aacacgatcg tcacctcggg atggcggccc aaagcggtgt gcagccacca tcggtccctc
     2401 gcgtctgcgc ccagcagcgt gccgtcaagg tcagcagcca ggatcttcgc gcaggaattt
     2461 tcagtagtgc atgcaagtgt gtttcgtgac ggctccgcgg tttctgtcat cggtccggaa
     2521 gatcccccca ttgcctgccc cgagatcggg acaaatgctc aacccagccg gaactccctg
     2581 cacatgagtc gaccagagcg cgaggatctt cgacccgtgg gcacttggct cagctccgcg
     2641 accggtgtgg ggacgcgagt agccacggtg gcagcagctc gcgaggtgcg gcaccacgct
     2701 gcctcccagg ttggtgattc cgagggtccg gtgttggtgt cggcagccat gtggcgctgt
     2761 gcagcgtctc tcaccatcgt ccctaggtta ttgatcgatt tcaccgcgtg tccacatact
     2821 gttcagttat gagctacggg cactacacgt cgcagctgtc tcagcaaggg gccctgctga
     2881 tcggcagctg gcatgagcgg ggataccagg ctgccgtgct tgtgcccaca ccacgggttg
     2941 cggaggtgct gggcgggcga gtgcacgaca tgggcaccgg gcccgggata tacggcatcc
     3001 gggcggcagc tctggcgcgg gctgagaacg atggggacgg tcgagggttg gagtatctcg
     3061 cctaccggct gagtcggtga aaccagtagc tgggcgcagg actggcggtc tagtgctggt
     3121 cgccggggcc tattcggtcg acctggtgtt tggggatctg gcggggccgg tggcgttggg
     3181 ctccgaggta tggtctcaga cactcgggat cgtgcctggc ggggcattca ccctggcgag
     3241 tgggctgcgg cggctggggc gagaggtggt gtgggcggcc gatttcggca ccgatgtctt
     3301 cagcagggag actctggctg cggcgcgcgc tgagggcttg gacgagcgtg gtttccggca
     3361 tcacgcgcgc cccgtgcgga atgtgacggt cgtgctgacg aacccccagg accgggcgat
     3421 gatcgcgtac gaggatccgg tcaccccacg acccctcggg gagttggttg cgacctaccg
     3481 gccggctgtg gtcatgctgc cgtacctgca atacggggcc gaggtgtcca cggcgcttga
     3541 catggccgcc cggcaaggcg cgcaggtatt catggactgt caggactatg ccggccacat
     3601 cagcatgccc gaggtccaaa agattctttc ccaagtgcag gtgttcgctc ccaatgagac
     3661 cgaagccttg agaatcaccg gggcaggcag cgtggaggag gcactcgacg tgctggccaa
     3721 cttcgtaccg acggtggtca tcaagcgggg cggcaacggc gcggtcgccg ccgaaaacgg
     3781 tcaacgtgtc gtccaggcgt cgccgccggt gccggtggtg gacaccaccg gagccggtga
     3841 ctgcttcaac gtgggttttc tgcaccggcg gctggagggt ggatcactca tcgagtgcct
     3901 ggccgcaggc gtggtctgcg gggcggcagc ggtaaccagc gcgggctcca gcagcgcctt
     3961 ggacgcaacc agcctggaga cgtggttgtc gcgcctgcca acatgaccgt ggcggcaggc
     4021 gcatcgacaa acaccctcgt cacgctcgac tccagacaac ttccgctgtg ccccaccagc
     4081 gggtggaagg ccgcaactta ctcgaaagtt tttcgcagcg ttgccacgga gatgtgcggc
     4141 ca
//
LOCUS       DASVXZ010000653         2335 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_880815, whole genome shotgun sequence.
ACCESSION   DASVXZ010000653 DASVXZ010000000
VERSION     DASVXZ010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880815"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1118
                     /locus_tag="VF788_13690"
     CDS             <1..1118
                     /locus_tag="VF788_13690"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEX8935211.1"
                     /translation="ALASAAPAVENLGMITVMGLVALWYRPGVDVPDVSVGMVLVLGV
                     GSTLSVAAHAAVQLFGAYRVGLPVRPRGGWSTEPDAREVSQRLRHSVAVAAFPVSSMF
                     AMLAVAATVPGGVFVFQAALSVYTVIGALGARAVTVAALPVMSAAARDGAAGPVGAAW
                     RQALNYSVLASLPALCLLLAFAGPVASTLANGELHDPRIVRWLTACLAVLAVSQFANA
                     GYEVARQTLFARLDTSGPRRASTAMMAVRIVVALGALLFLADGDRLVGLCCAVLLGDV
                     TAAVIALFIVRAAIRPERMVDRRRLAVIGASTLAMLPASALGSWMVGHMGLARVPQVM
                     TSLLMGSVALVCFGLVFAMLTDKVPTLIASVRSRLPG"
     gene            complement(1152..2330)
                     /locus_tag="VF788_13695"
     CDS             complement(1152..2330)
                     /locus_tag="VF788_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="globin domain-containing protein"
                     /protein_id="HEX8935212.1"
                     /translation="MTADAVRSYSPLPDRQPHRNGAAAIGVRLIRESYAQVAPRAEEA
                     TRFFYAMLFAIAPATRELFAANMEVQRSRFWRALVHIVQNVDRPDELVPFLDQLGRDH
                     RKFGVLAQHYDAMGTALVTALKQYAGPAWTPQVEKAWRDAYGLIAKTMQEAADSEASP
                     AWWTARVVDHKRLTWDLAVVRVIPDRPVPYQAGQYVSVEVPQRPRLWRYLSPANSPRP
                     DGSIEFHIRAVPGGSVSRSIVGHTQVGDTWRIGAPMGVMTVDRESGRDVLMVAGGTGT
                     APMRAILEDLSQWGENPQVTIFTGGRTRSDLHDLDTLTALAATNPWLTVIPVIESHPR
                     MIGMEHGTLADVVTRFGAWPDRDVLICGSPAMIRATMSRMLVAGTPLDRITYDPFTLD
                     "
BASE COUNT          320 a          768 c          834 g          413 t
ORIGIN      
        1 tcgcgttggc ctctgcggcg ccagcggtag agaacctggg catgatcacg gtgatgggcc
       61 tggtcgcgct ctggtaccga ccaggggtgg acgtaccgga cgtctcggtt ggcatggtgc
      121 tcgtactcgg cgtgggttcc acgttgtccg tcgcggccca cgcggccgtc cagctcttcg
      181 gggcctaccg ggtcgggctg ccggttcggc cgcgaggcgg ttggtcgacc gagccggatg
      241 cccgggaggt cagccagagg ctgcgccact cggtggccgt ggcggccttc cctgtgtcgt
      301 ccatgttcgc catgctggcc gtcgcggcga cggtgcccgg cggagttttc gtgttccagg
      361 ccgccctgtc ggtgtacacc gtgatcggcg cgctcggcgc cagagcggtt accgtggctg
      421 cgctgcctgt gatgagcgcg gcggccaggg atggcgcagc cgggccggtc ggcgcggcct
      481 ggcggcaagc gctgaactac agcgtgctgg ccagcctgcc cgccctgtgc ctgctgctcg
      541 ccttcgccgg cccggtggcg tccaccctgg ccaacggcga gctgcacgac ccgagaatag
      601 tgagatggtt gaccgcctgc ctcgcggtgc tcgctgtctc gcagttcgcc aatgcgggct
      661 acgaggtggc ccgacagaca ctgttcgctc gattggacac cagcgggccc cgccgggcca
      721 gcaccgcgat gatggcggtc cgcattgtgg tcgcgctcgg ggcgctgctg tttctggcgg
      781 acggcgaccg gctggtcggg ctgtgctgtg ctgtgctgct cggcgatgtg acggcagccg
      841 tgatcgcgtt gttcatagtg cgcgccgcga tccgtccgga gcggatggtc gaccggcgca
      901 ggctggccgt cattggggcg tccaccttgg cgatgctgcc ggcgtccgcg ctcggctcat
      961 ggatggtcgg gcacatgggg ctggctcggg tgccgcaggt gatgacgagc ctgctcatgg
     1021 gttcggtggc gctggtctgc ttcggcctgg tgttcgcgat gctcaccgac aaggtgccga
     1081 cgctgatcgc cagtgtgcgg tcccggctac cgggttgaaa ccggctggca cctccattgg
     1141 gccaccctcg actagtcgag ggtgaacggg tcgtaggtga tccggtcgag cggggtgccg
     1201 gcgaccagca tccgggacat ggtggctctg atcatcgccg gcgagccaca gatcagcacg
     1261 tcacggtctg gccaggcgcc gaagcgggtg accacatcgg cgagcgttcc gtgttccatc
     1321 ccgatcatcc tcgggtggga ctcgatgacc gggatcaccg tcagccacgg gttggtggcg
     1381 gctaatgcgg tgagcgtgtc gagatcatgg aggtcactgc gggtccggcc gccggtaaag
     1441 atcgtcacct gcgggttctc cccccactgg gacagatcct cgagaatggc gcgcatggga
     1501 gccgttccgg tgcctccagc gaccatcaag acgtcgcgtc cggattcccg gtccactgtc
     1561 atgacaccca tcggcgcgcc gatccgccag gtgtcgccga cctgagtgtg ccccacgatc
     1621 gagcggctga ccgagccgcc cggcactgcg cgaatgtgga actcgatcga cccgtcgggg
     1681 cggggagagt tcgccggcga gaggtaccgc cacagccggg gccgctgagg cacctcgacg
     1741 ctgacgtact gccctgcctg gtatggcacc ggccggtcgg gaatgacccg gaccacggcc
     1801 agatcccagg tcagccgctt gtggtcgacg acccgggcgg tccaccacgc cggactggcc
     1861 tctgaatcgg ctgcttcttg catcgttttg gcgatcaagc cataggcgtc ccgccacgcc
     1921 ttctccacct gcggagtcca ggctggaccg gcgtactgct tcagagcggt caccagagcg
     1981 gtccccatcg cgtcgtaatg ctgcgcgagc accccgaatt tgcgatggtc gcggccgagc
     2041 tggtccagga acggcaccag ctcgtcaggg cggtcgacgt tctgcacgat gtgcaccaga
     2101 gcgcgccaga accggctgcg ctgcacctcc atgttcgccg cgaagagctc acgggtggcc
     2161 ggagcgatgg cgaacagcat cgcgtagaag aaccgggtgg cttcctccgc tcgcggcgca
     2221 acctgcgcat agctctcgcg gataagccga accccgatcg cggccgcacc gttccggtga
     2281 ggctgccgat cgggcagcgg tgagtagctc cgcacggcat cggctgtcat ggtcc
//
LOCUS       DASVXZ010000654         7537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1775518, whole genome shotgun sequence.
ACCESSION   DASVXZ010000654 DASVXZ010000000
VERSION     DASVXZ010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7537
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1775518"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..298)
                     /locus_tag="VF788_13700"
     CDS             complement(155..298)
                     /locus_tag="VF788_13700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935213.1"
                     /translation="MKVKIDEFEERLSAYMRELGIEELDEAEIEVLRLAEPPDFAVRS
                     QIA"
     gene            949..1551
                     /locus_tag="VF788_13705"
     CDS             949..1551
                     /locus_tag="VF788_13705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8935214.1"
                     /translation="MVGRTGRGRAAAARVGAGDGGGAEDRVADAPGLRMVNGEFYPDW
                     EAVYRDNVDRVYRLMFAKVGNRPDAEDLTAEVFLAALRPLRVSASAPEVRAYLVATAR
                     TVLAGHWRRTLGREITQFTDDEVLESVPDEAAVPGEAVGRAAVILAELPELYRRILQL
                     RFLDSCSVREAAAALGVSVTYAKVLQHRALRRAAELEVTG"
     gene            1548..2264
                     /locus_tag="VF788_13710"
     CDS             1548..2264
                     /locus_tag="VF788_13710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX8935215.1"
                     /translation="MSARGVRRFVADLLRGRRPRSFRAEDADVAELRAAITLQGARPD
                     SAAPREEFVAGLHRRLAAELTGEETDREVRTAPRSGPVVDGTRRRLVAASSIAVAAAA
                     VGAVVDHVVTSRGSVPGETGGEQTLIPNTGVWRTVSTSADLAEGGVQGFDLGTVVGFV
                     ARTGGQVGAVSGVCTHLGCRLALDAPARRLNCPCHTTSFALGGELLRHQLPVPPPPLP
                     HLEVRETDGVVQIYAPPGPV"
     gene            2734..3186
                     /locus_tag="VF788_13715"
     CDS             2734..3186
                     /locus_tag="VF788_13715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin family copper-binding protein"
                     /protein_id="HEX8935216.1"
                     /translation="MRQFRTKLVIPAIAATAGAVIVAGCGGPTTTAAAGAAGPAPVVT
                     EQVMPGMSMPPAGITASGQDTPVATNAVSIQNFAFTPAIVTIKTGTTMTWTNRDQDSH
                     TATAMSGPFHSPTLNTGQSYQYTFTTPGRFDYLCTIHPFMTATVVVTP"
     gene            3183..4178
                     /locus_tag="VF788_13720"
     CDS             3183..4178
                     /locus_tag="VF788_13720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009077798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX8935217.1"
                     /translation="MNTPPPSIGPKTATGTGTEAGSAAGPGSMSRRQLLRHTAWFGAA
                     VVLTVAGGEVISHLGGAPAAAALIQDPHALRFVQISDSHLGFHGPANTDVTGSFSHAI
                     NQVNTLGFRPDFVMHTGDLTHLSTPAQFDQVRQMLGALRTGQVFTVPGEHDSVDDHGQ
                     KYRAMFGTGTHGDGWYSFDVKGVHVIALVNTLALEKLGHLGTDQLEFIRNDVAGLSSD
                     TPVVVFSHIPLFAMYPAWGWGTDDATQALSYLRRFASVTCLNGHVHQLFTKTDGNVTF
                     YSATTTAYPLPHPGQGPGPIPLTLPAGQLGTALGVRDITYQPGQHALAIRDRRLT"
     gene            4175..4567
                     /locus_tag="VF788_13725"
     CDS             4175..4567
                     /locus_tag="VF788_13725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009077801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935218.1"
                     /translation="MNPPLLARVGAASCLAASGLIHAQLYLNGYRTIPGIGPAFLLQA
                     SGSLAVALLLVLSSAALLRLAAAALAAGALMGFIASRTIGVLGFVEYGLQPAPQALIS
                     VLVEIAALGLLAVSLRDRTTRPALSPSH"
     gene            4581..4874
                     /locus_tag="VF788_13730"
     CDS             4581..4874
                     /locus_tag="VF788_13730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935219.1"
                     /translation="MDHSTHQIAQATDALTATSAHPPQIPSADELITALSDLATIAGL
                     LGQLATQTRRHLAAWATVDAHLRQAELHAGDLRRSLHHACATFAFTTSPPTVA"
     gene            4935..5201
                     /gene="tatA"
                     /locus_tag="VF788_13735"
     CDS             4935..5201
                     /gene="tatA"
                     /locus_tag="VF788_13735"
                     /inference="COORDINATES: protein motif:HMM:NF001854.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEX8935220.1"
                     /translation="MAGLTGWHLLILLAVVVLLFGAKRLPDMARAVGQSARILKGEMK
                     STALDERTPSQQHPPAASPALEPPPHPVIPAQEPTSDTTHPPTP"
     gene            5226..5540
                     /locus_tag="VF788_13740"
     CDS             5226..5540
                     /locus_tag="VF788_13740"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX8935221.1"
                     /translation="MFDLSIEKLFILALVALFVLGPERLPAAATWLARTLRQIKTYTT
                     DANQKIRNELGPEIDDIRTSLHPYSSPPAHWEPSPNRQPASPPPQPLAAGERPPFDLG
                     AT"
     gene            6262..6855
                     /locus_tag="VF788_13745"
     CDS             6262..6855
                     /locus_tag="VF788_13745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935222.1"
                     /translation="MTRLRELGPVARWRNPDLWDAVATAVLRQVIRASHARRLYQEFC
                     RAHGEPVATRFGQAWLFPVPETVLGLSDAEFARLGLAFKRHALRAAAEACCEFRSKWA
                     ALQPVDLLTELQSVPRVGPWTAGAAVADLTNDYALYPFADLAVRTWIDRLAPGRTWPE
                     SEHDFALAWARLAGDHLCAWTLLTLAWGNRHAIGASL"
     gene            6833..>7537
                     /locus_tag="VF788_13750"
     CDS             6833..>7537
                     /locus_tag="VF788_13750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697087.1"
                     /note="Presence of a B(12) (cobalamin)-binding domain
                     implies dependence on cobalamin itself, in one of its
                     several forms, or in some unusual lineages, dependence on
                     a cobalamin-like analog; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-dependent protein"
                     /protein_id="HEX8935223.1"
                     /translation="MPSGLHSDVIAGADLTRSVDALFVNAPLRDYTERPRVNDFTLPV
                     LGMAYLVTYAASRGFNVGVLDAEAYGLGVMAAIELIDELAPRWVGFNLLAPTYEISAR
                     IAAALDPTIKVMLGGHQAKAMPAEVLADPRMAGCVALVLGEGETRVAELLADHGSRAE
                     LPGVMWIDPFLKTPVTGGRPSTAGHLAPDINALPFVDRRYLAQDPHFEAGRWEANMVG
                     ARGCPYNCSFCGAAVSA"
BASE COUNT         1236 a         2568 c         2426 g         1307 t
ORIGIN      
        1 taacaccagt cctggccatg ctcgaccgaa ccagtgacga cgccgtaagc gcagaaagcg
       61 cgaaatctga agaaatgcca tggaactgag actcaagcca aatgacattc catgagacaa
      121 ccaacgaacc cgccggtcaa acaagatcga catgtcacgc gatctgagac cttacagcga
      181 agtcgggcgg ctccgccagt ctcaacacct cgatttcggc ttcgtctaac tcctcgatgc
      241 ccagctcgcg catgtaggcg ctcagccgct cctcgaactc gtcgatcttc accttcacct
      301 cggccagtac cggtctgccg gtcccactcg gtcaacttgg cgatgtgctg gccaaggctc
      361 atccctagcg gcttcctcgc ggcaagaacg ctccagtagc tcatctccaa gagctggaag
      421 cgcaacatga cctcgccgta gcgttcatcg cgacgtaacg ggccacagcc gtgtcgtcga
      481 cctcgtcggt cttgcgcacc cggacagtct gccgactcat tcaccgggct gcgggtcgcc
      541 gcgaccgagg tcaacccagt aaaagactga tttatgaaag ttaaccgggt gtcggccgta
      601 acctgcgtga cctggttgag atcgtcagga ccgtgtaagc ccgtggcgtc ggatctggtc
      661 gctgatcagc gggattgtcg acatcgccgc cgcgcacggc aagcacgtgt tcggcatgtt
      721 cgccgtgccc gctgagtagg aagtcgtctt gatccgcggg cgcaccggcc gcctgccgag
      781 ttcggggccg catgggtggg cgcccacggt gatggtcgcc gccccgagcg gcaaggcttc
      841 agcatggcag agatcgccac ctgctgtggt ctggctctat tgatcgctgt gtaacccggg
      901 tgtctatcta ttggtggggg tcggcgtatg cggtggaggg tggctcgggt ggtgggacgg
      961 accgggcgtg gccgggcagc ggctgctcgg gtgggcgctg gcgacggtgg tggtgctgag
     1021 gatcgggtcg ctgacgcgcc aggattgcgt atggtcaacg gcgagttcta cccggactgg
     1081 gaggcggtgt accgggataa tgttgatcgg gtgtatcggc tgatgttcgc caaggtcggt
     1141 aaccggccgg acgcggagga tttgaccgcg gaggtgttcc tggctgcgct gcgtccgctg
     1201 cgggtctcgg ccagtgcgcc ggaggtgcgg gcctacctgg tggccaccgc gcggacggtg
     1261 ctggccgggc attggcgaag gacgctgggt cgcgagatca cccagttcac cgatgatgaa
     1321 gttctggagt cggtgccgga cgaggccgcg gtgcctgggg aggccgtggg tcgggcggcg
     1381 gtgatcctgg ctgagcttcc cgagctctac cggcgcatcc tgcaactgcg gtttttggat
     1441 tcctgctcgg tgcgcgaggc cgctgccgca ctgggcgtga gtgtgacgta tgcaaaggtg
     1501 ctgcagcatc gggcgttgcg gcgggccgcg gagctggagg tgactgggtg agtgcacgag
     1561 gcgtgcgccg gttcgtcgct gatctgctgc ggggccgccg gccgcggtcg tttcgcgctg
     1621 aggatgccga cgtcgccgag ttgcgcgcgg cgatcacgct gcagggtgcc cgaccggaca
     1681 gcgcggcgcc tcgtgaggag ttcgtcgccg gcctgcatcg acggctggcc gcagagctaa
     1741 ccggggagga gaccgaccgg gaggtccgga cggcgccgcg gtctggaccg gtggtggatg
     1801 gcactcggcg tcggttggtg gcggccagct cgatcgcggt ggctgccgcg gcggtcggcg
     1861 ccgtggtgga ccacgtggtc accagccggg gttcggtccc gggtgagact ggtggggagc
     1921 agacgttgat accgaacact ggggtgtggc gcacggtgag caccagcgcg gatttggccg
     1981 agggtggggt gcagggtttc gatctcggca cggtggtcgg gttcgtggct cgcaccggtg
     2041 gtcaggtggg ggcggtgtcg ggggtgtgca cgcatctggg gtgccggctg gctctggacg
     2101 cgccggcccg gcggctgaat tgcccgtgcc ataccacctc cttcgccctc ggcggggagc
     2161 tgctgaggca tcagctgccc gtgccgcctc cgccgttgcc gcacctggag gttcgcgaga
     2221 ccgatggcgt ggtgcagatt tacgctcccc ctggcccggt gtaaccccgg tccgtatctg
     2281 ccgcggcgga tccctcctat cccggggcgc acagcgcgct gagcacggcc gccgtcactg
     2341 tattaaccgc cttctacggc acccagcagc cggtcacggt caccgcggcc accggcccca
     2401 acgtgacccg cagtttcccg agcctcgacg ccgccgccga cgaggccggg gcgcgcggtg
     2461 attccttgcg cagcttccga gccctaccga cgcctccggc agctgcgggt tttggaccga
     2521 ccggctcgac ctggccgtgc aggcaccgac gtcactgacc ttgccgcaac cgcggcacgg
     2581 tggtcgggtt cgtggctcgc accggtggtc aggtgcgggc ggtgtcgagg cgtgcaggtc
     2641 tacgccccgc ggggccggtg gtgtaacccc ggtccctatc tgttggcgag acccgcatca
     2701 gccgagtcca ccatcggaga gggatcgatc accatgcgcc agttcagaac caagcttgtg
     2761 ataccagcga tcgcggccac ggcaggggcg gtgatcgtgg ccggttgcgg tggccccacc
     2821 accactgccg cggcgggggc ggctgggccg gcgcccgtag tgaccgagca ggtgatgccg
     2881 ggtatgtcga tgcccccagc gggcatcacc gcgtcgggtc aggacacgcc ggtggccacc
     2941 aacgcggtct cgattcagaa cttcgcgttc accccggcaa tcgtgaccat caagaccggc
     3001 accaccatga cctggaccaa ccgtgaccag gattctcaca ccgcgaccgc catgtccggg
     3061 ccgtttcact ccccgacgct gaacaccggc cagtcctacc agtacacctt caccacgcca
     3121 ggccgctttg actacctgtg caccatccac ccgttcatga cggccaccgt ggtggtgacc
     3181 ccgtgaacac gcccccgccc tcgatcggcc ccaagaccgc caccgggacc gggaccgagg
     3241 ccgggtccgc ggctggcccg gggagcatga gccgccggca gctgttacgg cacacggcgt
     3301 ggttcggtgc cgcggtggta ctcaccgtcg ccggcggtga ggtgatcagc catctcggcg
     3361 gcgcaccggc tgcggccgcc ctcatccaag acccgcacgc gctgcggttc gtgcagatca
     3421 gcgatagcca cctgggcttc cacgggcccg cgaacaccga cgtcaccggc tcattcagcc
     3481 acgccatcaa ccaggtcaat accctgggat tccggccgga tttcgtgatg cacaccgggg
     3541 atttgaccca cctgtccacc ccggcccagt tcgaccaggt ccgccagatg ctgggcgcgc
     3601 tgcgcaccgg gcaggtgttc accgtgcccg gcgagcacga ctcggtcgat gaccacgggc
     3661 agaaataccg cgccatgttc gggaccggca ctcacgggga tggctggtac agcttcgacg
     3721 tcaagggtgt gcacgtcatc gccctggtca acaccttggc cctggagaag ctcggccacc
     3781 tcgggaccga ccagctcgag ttcatccgca acgatgtcgc cggcctatcc agtgacacac
     3841 ccgtcgtggt gttcagccac atcccgctgt tcgcgatgta ccccgcctgg ggttggggaa
     3901 ccgacgacgc cacccaggcc ctgagctacc tgcgccggtt cgcctcggtg acctgcctca
     3961 acggccacgt ccaccagctg ttcaccaaga ccgacggcaa cgtcaccttc tacagcgcga
     4021 ccaccaccgc ctacccccta ccccaccccg gccaaggccc aggccccatc cccctcacgc
     4081 tgcccgccgg gcaactcggc accgccctgg gcgtccgcga catcacctac caacccggcc
     4141 aacacgccct ggcgatccgc gatcggagac tcacatgaac ccgcccctgc tggcgcgggt
     4201 cggcgcggcc agctgcctag cagccagcgg cctcatccac gcccagctct acctcaacgg
     4261 ctaccgcacc atccccggga tcggcccggc gttcctactg caagccagcg gctccctcgc
     4321 ggtagcgctg ttgctggtgc tcagctccgc ggcactgctg cggctagccg ccgccgcgct
     4381 agccgccggc gcgctgatgg gattcatcgc ctcccgcacc atcggagtcc tcgggttcgt
     4441 cgaatacggc ctgcaacccg ccccccaagc cctgatcagc gtgctcgtcg agattgccgc
     4501 cctagggctg ctcgccgtct cgctccgtga ccgcactacc cggcctgcac tttctccgag
     4561 tcactagaaa ggcgagatcc atggatcaca gcacgcacca gatcgcccaa gccaccgacg
     4621 ccctcaccgc gaccagcgcc caccctcccc aaattcccag cgcggacgaa ctgatcaccg
     4681 cactgtctga cctggccact atcgctggcc tcctcggtca gctcgccacc cagactcgtc
     4741 gacacctagc cgcctgggcc accgtcgacg cccacctgcg ccaagcagaa ctgcatgccg
     4801 gggacctccg ccgctccctc caccacgcct gtgccacgtt cgccttcacc acctctccac
     4861 ccaccgtggc ctaacccaga cctccccaag gccccaccca cccccggatc gcgcccaccc
     4921 aggaaagggc tgtcatggcg ggcttaaccg gctggcatct gttgatcctg ctcgctgtgg
     4981 tggtgctgct cttcggcgcc aaacggctac ccgacatggc ccgcgcggtc ggccaatccg
     5041 cgcgaatcct caaaggcgaa atgaagagca ccgccctcga cgagcgcacc ccaagccagc
     5101 aacacccacc ggcagcctca cccgccctcg aaccaccccc gcaccccgtt attccagccc
     5161 aggaaccaac ctccgacacg actcacccgc ccacccccta gcctccacac cgcgcggagg
     5221 aatcagtgtt cgatctgagt atcgaaaagc tgttcatcct ggcattggtt gcgctgttcg
     5281 tgctgggacc agagcgactc cctgccgcgg cgacctggct ggctcgaacc ctccgacaga
     5341 tcaagaccta caccaccgac gcgaatcaga agatccgcaa cgaactcggc ccggaaatcg
     5401 acgacatccg cacatcgtta cacccatact catccccacc ggcccactgg gaaccaagcc
     5461 caaaccggca gccagccagc ccaccaccac agccgcttgc cgccggggaa cgtccacctt
     5521 tcgatctcgg ggcgacctaa cccaacccaa atcacgcaaa catcgcgcta actcagtaaa
     5581 actctaattt atgaaagtta acgggtgctg gccgcaacct gcgtgacctg atcgagatcg
     5641 tcaccaccgg caagtgcgtg gtgtcggatc cggtcgctga ccgacggttt cgttgacatc
     5701 gccaccgcgc acggcaagct cgacttcggc acgttcgcca tgcccgctga gtaggaagcc
     5761 accgtgatct gcgagcgcac cagtctcccg acttcggggg tcgcatcggt gggcgcgcac
     5821 aaagagatcc ccgccctgcc gcctgtggcg ttcccagttg agagatggac gtgggcggcc
     5881 gataactgac ctagggctgg ggtggagagg atcctgccga catcaccacc taaacgcggt
     5941 ggggggagct ggccacgtac tgggtgacac cccgcgctca ggtcatcaag accgacttcg
     6001 atggcctgga aggggatgag gctcatgtgc gatacgtctt gtgtgggatg ggtgatgact
     6061 gatcatccgt cctggttggt cgcaggacgg accacgtttc gtgtggtgcg gtatgaacgg
     6121 tcgatctggg tgctgagctg cgcacctagc agcggctctg gcaagggggt tctcgcgcgg
     6181 gctgatctga tctcgggtac cgatgctggc cctgccccgg atgtgttcga tccgagatca
     6241 ctggtggggc ccgagccact ggtgaccaga ctgcgtgagc tcggcccggt ggcccgctgg
     6301 cgcaatccgg acctatggga cgcggtggcg accgccgtgc tacggcaggt gatccgcgcg
     6361 agtcacgccc ggaggctgta tcaggagttc tgtcgtgcac acggtgagcc ggtggcgacg
     6421 cggttcggtc aagcgtggtt gttcccggta ccggagaccg tgctcggtct gtcggatgcc
     6481 gagtttgcgc ggttgggctt ggcgttcaag cggcatgcgt tgcgcgccgc agccgaagca
     6541 tgctgtgagt tcaggtcgaa gtgggcagcg ttgcaaccgg tggatctgct gactgagttg
     6601 cagtcggtac cgagagtggg gccgtggact gccggcgccg ccgtcgcgga cctcaccaac
     6661 gattacgctt tgtacccctt cgctgacctt gcggtgcgta cgtggattga tcggctggca
     6721 ccggggagaa cctggccgga atctgaacac gacttcgccc tggcctgggc acggttggcc
     6781 ggggatcatc tctgtgcgtg gacgctgctc acgcttgctt gggggaaccg acatgccatc
     6841 ggggcttcac tctgatgtga tcgcgggggc agatctgacc cgcagcgtgg atgctctgtt
     6901 tgtcaacgca ccattgcgcg actacaccga gcggccccgt gtcaacgact tcacgttgcc
     6961 ggtgctcggg atggcttatc tggtcaccta cgcggcatca cgtgggttca acgtcggggt
     7021 tctcgacgcc gaagcctatg gcctgggtgt gatggccgcc atcgagctga tagacgagtt
     7081 agcgccccgc tgggtgggtt tcaacctgct cgcgccgacc tatgagatca gcgctcgtat
     7141 cgccgccgcg ctcgacccaa caattaaggt catgcttggt gggcatcagg ccaaggcgat
     7201 gcctgctgag gtcctcgccg atccccggat ggccggctgc gtggcgctgg tactgggcga
     7261 aggggaaaca cgggtggccg aactgctcgc cgatcatggt tctcgcgccg agctgcccgg
     7321 tgtgatgtgg atcgatccgt tcctcaagac gccggtcact ggaggcaggc ccagcacagc
     7381 cggccacctc gcaccggaca tcaatgcgct gccatttgta gatcgccgct atctcgctca
     7441 agacccccat ttcgaggccg ggaggtggga ggcgaacatg gttggcgcgc ggggatgtcc
     7501 ctataattgc tcattctgcg gcgcggctgt ctcggca
//
LOCUS       DASVXZ010000655         7547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_700427, whole genome shotgun sequence.
ACCESSION   DASVXZ010000655 DASVXZ010000000
VERSION     DASVXZ010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7547
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_700427"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VF788_13755"
     CDS             <1..621
                     /locus_tag="VF788_13755"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEX8935224.1"
                     /translation="VQSASQDLRLCFFGDSYVQGVGDATGAGWVGPVAGQMMGYGTAF
                     NLGVRGDTSLDVQRRWYDEARCRLKNSERYGVLFSFGVNDTHISEGRTRVPRQRSLTV
                     LSALLDDAHVSGWSALVVGPPPPAEDGHRRRVRRLSTDMAMVCTSCATPFVDLVTPLE
                     ADESWLAELAAGDGSHPGTAGYWRMASLIGPEFTTWLATLAEPKVQ"
     gene            650..1471
                     /locus_tag="VF788_13760"
     CDS             650..1471
                     /locus_tag="VF788_13760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935225.1"
                     /translation="MHPLDKQTVLVTGSTSGLGRRLVHRLAGAGATVVAHGRDAQRLA
                     RTREEISQATGRKVDTVQADLADLSQVHRLADEVLDRYPQLHGLVNNAGVGFGAPGAG
                     REVSADGIELRFAVNHLASYLLARRLADRMVASAPARIVQVASAGQLALDPDDPFTEH
                     NYDGITAYRRSKLAQVMASFDLAADLVGTGVSVNAVHPATFMDTAMVREAGQSPASSV
                     DEGVAAVWRLLTDPDLDRVSGHYFYGTVRAQPDPQADDPAMRAWLRQLSDSLVAR"
     gene            1563..3023
                     /locus_tag="VF788_13765"
     CDS             1563..3023
                     /locus_tag="VF788_13765"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEX8935226.1"
                     /translation="MSTGSISTGWMISPLSARRTLLGWFFALALPALAAMVSVTGRGV
                     FGLPTDVMMFVLSVVVVALIGGLGPALLAAVASALLLNFFLTPPLYTFTIADNENVIT
                     LVVMVLVAVLVALVVNQAARRAEQASRARAEASLLGEFASIVLTNQEPLPLLMDRVRE
                     AFGANSVTLLERRKAGWLPVASAGEDPVAVPDEADADVTIDTDVHLALVGRALSAGDQ
                     RMVRAAAGQALLALRTQRMAARALDAQRRAEATELRSALLSAVGHDLRTPLTSIKVAA
                     SGLRDPELTLSEGDITELLATIEESADRLQGLVDNLLDSARLATGAVVPQLRAVGYDE
                     VLARALSTVDGAHLVTTEVSETLPAVHADPGLLERIVANLIDNALRHGHGCSVVVRAA
                     SADGEARLQVSDHGPGLPADALDSLFTPFQRLGDRTARPGLGLGLAVARGFTEAMGGR
                     IGAEPTPGGGLTMTITLPLAPAAPVPEPAIRTSEPR"
     gene            3020..3709
                     /locus_tag="VF788_13770"
     CDS             3020..3709
                     /locus_tag="VF788_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8935227.1"
                     /translation="MTTRVLVVDDDPHILRAIRIHLTASGYAVSTAQTGRAALRAGAA
                     EPPDLVLLDLGLPDLDGTVVIGELRRWSSVPIIVLSARSDGVDKITALDTGADDYVTK
                     PFSFPELLARMRAAVRRSVHGSPANVDTVVDTQDFSIDLVAKRVITCATGQVHLTPTE
                     WAILELLVRNRGALVSQRRLLNEIWGPAYRTETNYLRVYLAQLRRKLEPEPARPRYLI
                     TEPGMGYRFQD"
     gene            3809..5050
                     /locus_tag="VF788_13775"
     CDS             3809..5050
                     /locus_tag="VF788_13775"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX8935228.1"
                     /translation="MSGSVDLIVVGGGIAGSSLATVMARDGYQVVVLERQAAYRDKVR
                     GEWLACWGVAELLRLGLERALLDAGGSYVTCVVSYDEVAEPAQAEAAAASLVQLLPGV
                     PGALDVGHPEACEALTQAADAAGATVIRGVGDIDLEPGESPVVRYQHDHRAHELRCRL
                     VVGADGPMSTVRRRVGIELHQTAPRIMMGGMLVKGLDAWPAHQFSIGTEGDLLYYIFP
                     RANGLARLYLGHDIAQKGRFTGPDRQAEFLAAYGFRCIPGSEMFYSAHSAGPCAFYPM
                     NDGWIEQQPYEPGVVLIGDAAGWNDPIIGQGLAIALRDVRIVTDVLRSGPDWSAAAFT
                     GYGEERGERMRRLRVTAALVTDLAATFTPAGASRRRAYNAAWQTDPLLGGARLAPLMG
                     PDNVPAGSFSQAAVDRILALA"
     gene            5350..5877
                     /locus_tag="VF788_13780"
     CDS             5350..5877
                     /locus_tag="VF788_13780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935229.1"
                     /translation="MNESWSDDFEVLHWVVERFESSGHCIEVGEALRVFPEEYYDSVR
                     ESLRRLSSHTYVVTGNGAELTRTAIGGQPVVNDTTDRALRLVGTMPNDAELLADRILT
                     VLVEGVVNEPDLEKRFKLEAGLKGVGGMTRDVLVDVVATAIARSTAATSTAATSTAVP
                     QPWSYPYERVAQDHP"
     gene            6055..7143
                     /locus_tag="VF788_13785"
     CDS             6055..7143
                     /locus_tag="VF788_13785"
                     /inference="COORDINATES: protein motif:HMM:NF025182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4185 domain-containing protein"
                     /protein_id="HEX8935230.1"
                     /translation="MGVVLGVVIAVMTLGAAPPGTAGTDQPGQARRVAVLTGAESLNA
                     TQVRYQVKGTDLGIMWADERGQILAAFGDTFGPGWAGHGSEISDPAASDWRSNTLART
                     GDRNPADGMSFTDFVTDRAGHAKELLSSLKQDGVEITKIPTGGVNVGGRNYLAYMSVR
                     HFGRPGQWTTNYSGIAYSDDGGQSWISPPQTYRPNTPAADEKFQMISYARRDGFVYAF
                     GTPNGRSGDAYLARVPEQRLLDNSAYEYWTGTAWLPGASSTAAPIMTGPVGELSVRFD
                     QALQSWEMMYLDEPRGAIVVRLAPQPTGPWGTPMPVATSQQYPTLYGGFLNPDSHGSD
                     IYFTMTQYDRYNVSLMHATLPTGARRNA"
     gene            complement(7160..7348)
                     /locus_tag="VF788_13790"
     CDS             complement(7160..7348)
                     /locus_tag="VF788_13790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935231.1"
                     /translation="MELHLPDDTVWTGEAYLVTDTDHESSLPVLLRGTGPLKENSIPL
                     HSDVVAKRLDPMLVERQC"
BASE COUNT         1276 a         2421 c         2485 g         1365 t
ORIGIN      
        1 gtgcagagtg ccagccaaga tttgcggctt tgtttcttcg gggattccta cgttcaaggg
       61 gtcggagacg ctaccggcgc cggatgggtc ggcccggtcg ccgggcagat gatgggatac
      121 ggcaccgcgt tcaacctagg cgtgcgtggt gacacctcgc tggatgtgca gcggcggtgg
      181 tacgacgagg cgcggtgcag actcaagaat agtgagcgct acggcgtgct gttctcgttc
      241 ggtgtcaatg acacacatat cagcgagggc cgtacccggg tgccccgcca acgaagcctc
      301 accgttttgt ctgccctgct cgatgacgcg cacgtatcgg gttggtcagc gttggtggtg
      361 gggccgcctc caccagcaga ggatggtcat cgccgtcgtg ttcggcgtct gagcaccgac
      421 atggcgatgg tatgcacgag ctgcgcgaca cccttcgttg atctagtgac cccgctggaa
      481 gccgacgaga gctggttggc tgaacttgct gccggtgatg gcagccatcc cgggacagca
      541 ggctactgga ggatggcgag cttgatcggt cccgagttca ccacgtggct cgccaccctg
      601 gctgagccga aggtgcagtg acatatcatc gatgccgtag ggagaccgga tgcatcccct
      661 cgacaagcag accgtgctgg tcaccggatc taccagcgga ctgggccggc gattggtaca
      721 ccgccttgcc ggagcgggcg ccaccgtcgt cgcgcacggt cgcgacgccc agcggctggc
      781 ccgcacccgc gaggagatca gccaggcgac cggtcgcaaa gtggacaccg tccaagctga
      841 tctcgccgac ttgtcccagg tccaccggct ggccgatgag gtgctggacc gttatccgca
      901 gctgcacggg ctggtcaaca acgccggggt gggcttcggg gcccccggcg ccggccgcga
      961 agtcagtgcg gacggtatcg agctcaggtt cgcggtcaac catctggcaa gttacctgct
     1021 ggcccggcgg ctggccgacc ggatggtcgc gtcagctcca gcccgcatcg tgcaggtcgc
     1081 ttccgccggc cagctagccc tcgatcctga tgatcccttt accgagcaca actacgacgg
     1141 cattaccgcg taccggcgtt caaagcttgc ccaggtgatg gccagcttcg atcttgccgc
     1201 tgatctggtc ggtaccggcg tgtcggtgaa cgcggtacat cccgcgacat tcatggacac
     1261 cgcgatggtc cgcgaggccg ggcagtcccc ggcctcctcc gtcgacgaag gcgtcgccgc
     1321 ggtatggcgc ttacttaccg atcccgacct ggaccgggta agcggccact atttctacgg
     1381 cactgtgcga gcccaaccgg acccgcaggc tgacgacccg gcgatgcgag cttggctgcg
     1441 gcaactatcc gattccctcg tagcgcgcta gccgcgggcg ggacgagcgt acgtagtgaa
     1501 actcaagtcg agttcacgac gcggcgatat gaatagcgct cggttggtac gacactgggt
     1561 cgatgagcac tgggtcgatc agcaccgggt ggatgatcag cccgctgtcg gcccgtcgca
     1621 cgctactggg gtggttcttc gcgcttgcct tgccggcatt ggcggcgatg gtctcggtga
     1681 ccggccgggg tgtcttcggg ctgcctaccg acgtgatgat gttcgttctg tcggtggtgg
     1741 tggtcgcctt gatcggtggg ttgggtcccg cgctgctggc cgccgtcgcc tccgcattgt
     1801 tgctcaactt ctttctcacg ccacccctgt acaccttcac catcgcggac aacgagaacg
     1861 tgatcacgct ggtggtcatg gtgctggtcg cggtcctggt ggcgctggtc gtcaaccagg
     1921 cggcgagacg cgctgagcag gcgtcccggg ccagggcgga ggccagcttg ctcggtgagt
     1981 tcgcctcgat cgtgttgacc aaccaggaac cactcccgtt gctgatggac cgggtgcggg
     2041 aggccttcgg ggccaactcg gtgacgttgc tcgagcggcg gaaagccggc tggctgccag
     2101 tggcgagtgc tggagaagat ccagtggcgg tgccggacga ggccgacgcg gacgtcacga
     2161 tcgacaccga tgtgcacctc gcgctggtcg gtcgggccct gagcgccggt gaccagcgga
     2221 tggtccgggc agcagcgggt caggcgctgc tcgcactgcg gacccagcgg atggcagccc
     2281 gagccctgga tgcccagcgc cgggccgaag ccaccgagct gcgcagtgca ctgctctccg
     2341 ccgtcggcca cgacctgcga acgccactga cttcgatcaa ggttgcggcg agcggcttgc
     2401 gcgaccctga gctgacgctg tccgagggcg acatcaccga gttgctggcc actatcgagg
     2461 agtctgcgga tcgcctgcaa ggcctggttg acaacctgct cgactccgct cgactcgcca
     2521 ccggagccgt cgttccccaa ctccgcgcgg tgggctatga cgaggtgctc gcgcgtgcgc
     2581 tgtcgaccgt ggacggtgcg cacctggtca ccacggaggt cagcgaaacg ctgcccgccg
     2641 tgcacgccga ccccggactg cttgaacgga tcgtggccaa cctcatcgac aacgcgctcc
     2701 gccacgggca cggctgctcg gtcgtggtcc gggcggcgtc ggcggacggc gaggcgcggc
     2761 tacaggtcag cgatcacggt cctggcctgc cagcggacgc gctcgattcg ctgttcacgc
     2821 catttcagcg gctcggtgat cgaacggccc gtccgggcct gggcttgggc ctggcagtgg
     2881 cccgcggctt caccgaagcc atgggtggtc ggatcggtgc cgaaccgaca cctggcggtg
     2941 gcctgaccat gacgatcacg ctgccactgg caccggctgc gcctgtgccc gagccagcca
     3001 tccgaacctc ggagccaagg tgacgacccg ggttctcgtg gtcgatgacg atccacacat
     3061 cctgcgcgct atccggatcc acctcactgc gtccggctac gccgtttcca ccgctcagac
     3121 cggccgtgca gcgctgcgag cgggtgctgc ggaacctccc gacctggtgc ttctggacct
     3181 cggattaccc gacctcgacg gcaccgtggt catcggagaa ctacgccgct ggtccagcgt
     3241 gccgatcatc gtgctgtctg cgcgcagcga tggtgtggac aagatcaccg cgctcgatac
     3301 cggagccgac gactacgtca ccaagccgtt cagctttcct gaactgctcg ctcgaatgcg
     3361 ggctgccgtg cgcagatccg tgcacggctc accggccaac gtggacaccg tggtcgatac
     3421 ccaggacttc agcatcgatc tcgtggcgaa gagagtgatc acctgtgcca ctgggcaggt
     3481 gcacctcacg cccaccgagt gggccatcct cgaactcctg gtccgcaatc gcggcgcttt
     3541 ggtttcccag cgccgattgc tcaacgagat atggggacct gcttaccgaa ccgaaacgaa
     3601 ctacctgcgg gtctacctcg cgcaactgcg ccgcaagctc gaaccagaac cggcccgtcc
     3661 gcgttatctc atcaccgaac cgggcatggg ataccgtttt caggattaac agcccaaaag
     3721 gtacacggca gaaagatgat gtatctgagc gccctcgcca ctattttaat gggggacctc
     3781 ggcgacgccc cagcgaagga agaggcgcat gagtggatca gttgatttaa tcgtggtggg
     3841 tggcgggatc gccgggtcgt cgttggcgac cgtgatggcc agggacggtt atcaagtcgt
     3901 ggtcctggaa cgtcaggctg cctatcggga taaggtccgc ggcgagtggc tggcctgttg
     3961 gggtgtggct gagctgcttc ggcttggcct ggagagagcg ctgctcgatg cgggtggtag
     4021 ctacgtgaca tgtgtggtgt cctatgacga ggtggccgag ccggcgcagg ccgaggcagc
     4081 cgccgcatcg ctggttcagc tcctgcccgg cgtgccaggc gcgctggacg tcgggcaccc
     4141 cgaggcctgc gaggcactga cccaggccgc tgacgcagcc ggggccaccg tgattcgcgg
     4201 tgtcggcgac atcgacctcg agcctggcga gtcgccggtg gtgcgttacc agcacgacca
     4261 tcgcgcccac gagttgcgct gccggctggt ggtcggtgcg gacggtccaa tgtccacggt
     4321 ccgtcgccgg gtcggtatcg agctgcacca gaccgcgccg cgcatcatga tgggcggaat
     4381 gctcgtcaag ggcctggatg cgtggccggc tcaccagttc tcgatcggta ccgagggcga
     4441 cctgctctac tacattttcc cgcgggcgaa cgggctggcg cggctttacc tggggcacga
     4501 tatcgcgcag aagggccggt tcaccgggcc ggaccggcaa gcggaattct tggccgccta
     4561 cggtttccgc tgcattccag gcagtgagat gttctattcc gctcactccg ctgggccgtg
     4621 cgcgttttac ccgatgaatg acggatggat cgagcagcag ccctacgagc ccggggttgt
     4681 gctgatcggc gacgccgccg ggtggaacga cccgatcatc gggcagggac tggcgatcgc
     4741 gctgcgcgat gtgcggatcg tcaccgacgt cctgcgcagc gggccggatt ggtccgccgc
     4801 cgccttcacc ggatacggcg aggaacgcgg ggagcgaatg cgccggctgc gggtcaccgc
     4861 tgcgctggtc accgaccttg cggcgacctt caccccggca ggcgcatccc gccgtcgtgc
     4921 ttacaacgcc gcctggcaaa ctgacccgct gctcggcggt gcccggcttg ccccgctgat
     4981 gggtccggat aacgtgccgg ccgggtcttt ctcccaggcc gcggtcgatc ggatccttgc
     5041 gctcgcgtaa ctacggcctc catggccgtt agacgtctcg tgaaacgtct acatagcagg
     5101 cttgagtatt atctcgtctt ccttcagttt cgctgaattc tcggcgtggc gatcgccaga
     5161 agtcaaagta gtcaaagttg tggtcttaga ctgccgccac tttgtggacc tcagaccccg
     5221 tcagtctgac ctgaggtgat cgcgcgcgct aggtgggatt gaaagaaagg gggcactaca
     5281 tgcagtaccg cggggctccc cgccggacag gtcgcgtacc tgatcatgga ggcggattgg
     5341 gagggccaca tgaacgagtc gtggtctgac gacttcgagg tgctgcactg ggtggtcgag
     5401 cggttcgaaa gctcggggca ctgcatcgag gtgggtgagg ccctgcgggt ctttcccgag
     5461 gagtactacg acagcgtgcg ggaatcgctg cgccggctga gcagtcacac gtacgtggtg
     5521 actggaaacg gcgctgaact gacacgaact gcaatcggag ggcagccagt ggtaaatgac
     5581 actactgacc gtgcgctacg cctggtgggg acaatgccga acgacgccga gctgctcgcc
     5641 gaccggattc tgaccgtcct tgtcgagggc gtggtcaacg agccggatct agagaagcgg
     5701 ttcaagctcg aggccgggct caaaggcgta gggggaatga cccgagatgt gctcgtcgac
     5761 gttgtagcga cggccattgc tcggtctacc gctgccacat cgaccgctgc cacgtcgacc
     5821 gctgtcccac agccgtggtc gtacccctac gagagggtcg cccaggatca tccctagtcg
     5881 cgatcgtttc acccgagaag acgagctgat ctccgttact ccccggccgt cacccgcgtt
     5941 agtcaacagg tgccccggta cgcgcagcct tcactctccg ggtgtcgagg acgtctcctg
     6001 caccgtgcac atccaggccg gaggggggca cagatgatcc gtcaccgagc tcacatgggc
     6061 gtcgtgctcg gggttgtgat cgcggtcatg acgctggggg cggcaccgcc ggggacggcc
     6121 ggcaccgacc agccgggcca ggcacgccgg gttgccgtgc taaccggcgc ggagtccctc
     6181 aacgcgacgc aggtgcggta ccaggtgaag ggcactgatc tggggatcat gtgggccgat
     6241 gagcgagggc agatcctggc tgcgttcggg gacactttcg gaccggggtg ggcgggtcac
     6301 ggcagtgaaa tcagtgatcc ggccgccagc gactggcgct ccaacacgct ggcccgcacc
     6361 ggagatcgga atccggctga tggcatgtcc ttcaccgatt tcgtcaccga ccgcgcgggc
     6421 cacgccaagg aattactttc ctcacttaag caggacggtg tcgagatcac caagatcccc
     6481 accggaggtg tcaacgtcgg cggacgtaat tacctggcct acatgtcggt gcgtcacttc
     6541 ggccgtcctg ggcagtggac cacgaactac agtggcatcg cctactccga tgacggtggg
     6601 cagagctgga tcagcccccc tcagacgtat cgtcccaaca ccccagccgc cgacgagaag
     6661 tttcagatga tctcctacgc tcggcgggac ggattcgtct atgccttcgg tacccctaat
     6721 ggccgctccg gtgacgcgta tctcgcccgg gtgcccgagc agcggctgct ggacaactcc
     6781 gcttacgaat actggacagg gaccgcctgg ctgccaggcg ccagctcgac cgcggccccc
     6841 atcatgaccg gccccgtcgg ggaactgtcg gtccgcttcg accaggccct ccagagctgg
     6901 gaaatgatgt acctcgacga gccgcgcggg gcgatcgtgg tccggctcgc cccgcaaccg
     6961 accgggccat ggggcacacc gatgccggtc gccacctccc agcagtaccc gaccctttat
     7021 ggcggtttcc tcaacccgga ctcacatggg tccgacatct acttcaccat gacccagtac
     7081 gatcgctata acgtctcgct catgcacgcc acactgccga ccggcgcacg aagaaacgca
     7141 taagagcccg tcggtggttt cagcactgac gttcgaccaa catcggatcg agccgcttag
     7201 ccaccacatc agagtgcagc gggatcgagt tctctttgag tgggccggta ccgcgtaaaa
     7261 gcaccggcaa ggatgactcg tggtcggtgt cagtcaccag gtatgcctca ccagtccaca
     7321 cggtgtcatc gggaagatgc agctccacgg ccacatcgtt ggcttgcgag ccccactccg
     7381 cagagtcatc accagtgttg acggaccagc ttatcagggg cgcgactggt tgactgacct
     7441 ccagttcacc tggcctgagc tggccatcgg cgatgcggca catcacattg acgatcatcc
     7501 ccaacctttc tatcgcgtcg ctatcgagga gcacctaacg atggcac
//
LOCUS       DASVXZ010000656         4915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_881095, whole genome shotgun sequence.
ACCESSION   DASVXZ010000656 DASVXZ010000000
VERSION     DASVXZ010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4915
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_881095"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..263)
                     /locus_tag="VF788_13795"
     CDS             complement(48..263)
                     /locus_tag="VF788_13795"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEX8935232.1"
                     /translation="MHQPTVRRAASTRQIDIREVHAGYRADALARDAVAESAQALVAA
                     GGDGTVSAVARVASSAAFPDRGSLWHA"
     gene            406..1317
                     /locus_tag="VF788_13800"
     CDS             406..1317
                     /locus_tag="VF788_13800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005157112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HEX8935233.1"
                     /translation="MAKSKSARSEDVAPLRVSDLLRVPPGPVNLNAVATRETPGFPGS
                     GKTDATAAIRHLGPHLANLQEQLYAEGHTGGRRSLLLVLQGMDTAGKGATVKHVLGLM
                     NPMGVQYHAFKKPTPQECEHHFLWRVKRRLPPPGIVGVFDRSHYEDVVVVRVHELVPP
                     EIWSRRYDVINRFEEKLATSATRIVKCFLHISKEEQKRRLIARLDDPTKRWKYSPADV
                     DERAYWNDYQQAYSGALGKCNTEAAPWYAVPADRRWYRNWAVTRILTEQLEEMALTWP
                     TPTGWDLQEERARLAAGSATRPQPRTP"
     gene            1331..2035
                     /locus_tag="VF788_13805"
     CDS             1331..2035
                     /locus_tag="VF788_13805"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8935234.1"
                     /translation="MDVLDRAALVDDHLDQLVHDVGGVPYRAFTQRTGLASEGQPAML
                     TESVRRKPYSVVLFNEVEKAHHDVFNTLLQVLDDGRLTDAQGRTVNFRNTVLIMTSSI
                     GSEYLLEGVTAEAEITPQARELVMSELRHHFRPEFLNRIDDIVLFSPLTQAQIEQIVE
                     LMFNELRTRLAERRITLEVSDEARRFIAREVETRIGRALLADAIPDGATIRIKLKGDE
                     LIVTHDDLRSATSTAT"
     gene            2041..2523
                     /locus_tag="VF788_13810"
     CDS             2041..2523
                     /locus_tag="VF788_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEX8935235.1"
                     /translation="MAATTATRTVTCENCGKVNRVPAAAQGRPRCGNCKAYLPWIVDA
                     SDNDFTEIAEKAVIPVLVDLWATWCGPCHLVSPALERLAREKAGKLKLVKVDIERASK
                     LAQRFSVRAVPTLLVLYRGEVIARQPGAAPLEALRRWLDDAMTRIPPIHASETTNGPA
                     "
     gene            2510..2755
                     /locus_tag="VF788_13815"
     CDS             2510..2755
                     /locus_tag="VF788_13815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935236.1"
                     /translation="MDLRRKARQLPLRFIGEAEFFTAVVVEDGEVLVVSVEGLRPGDP
                     RARPGHQHGDQQLRYRRHRNQTGCGESTRRLPHRGCA"
     gene            2658..2897
                     /locus_tag="VF788_13820"
                     /pseudo
     CDS             2658..2897
                     /locus_tag="VF788_13820"
                     /inference="COORDINATES: protein motif:HMM:NF015587.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
     gene            3007..3159
                     /locus_tag="VF788_13825"
     CDS             3007..3159
                     /locus_tag="VF788_13825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935237.1"
                     /translation="MKERLYSRGLVDTPATDADYRAYDVYAKERAYHDDERVHTHFSR
                     HDADDG"
     gene            3332..>4915
                     /locus_tag="VF788_13830"
     CDS             3332..>4915
                     /locus_tag="VF788_13830"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEX8935238.1"
                     /translation="MPDSDFRRQLAQQLRVDSVRASAAAGSGHPSSSMSAADLIAVLL
                     DGYLTLDFRRPEDPRNDHLIFSKGHASPLYYALLKAVGAITDEELLTYRTFGSRLEGH
                     PTPRIPPTDVATGSLGQGLPVGVGLALTGKKLDRLPYRIWVLCGDSELAEGSMWEAFQ
                     YAAWAKLDNLTAIVDVNRLGQTRETMLGWDLEGYAARTRAFGWHPIVVDGHDVDAIDA
                     AFAEATATTGRPTVVLARTKKGRGVKAVEDQAGKHGKPLQDPEAAIIELGGERDLTVR
                     VATPKGPAEVHHFPTTGTELPTWELGEQVATRQAYGQALTALGGARGDVVALDGEVSN
                     STATELFAQAHPDRFFEMFIAEQQMVAAAVGMQARGWVAFASTFGAFLSRAYDFVRMA
                     AVSRANLRLCGSHAGVSIGEDGPSQMALEDMAALRAVHGSTVLHPSDANQTTKLVAEM
                     ADRPGVSYLRTLRGATPVRTPADEAVRIGGSRVLRATDHDHLTIVACGITVTEAEKAA
                     EILATDGVRARVVDCYSIKP"
BASE COUNT          890 a         1599 c         1567 g          859 t
ORIGIN      
        1 cacctgcggg gtcagcgatg tctgccccgc agtccttcgc gaagtggtta cgcgtgccac
       61 agggaaccac gatcaggaaa cgccgcgctc gacgccaccc tcgcgacggc actcaccgtt
      121 ccgtctcctc cggcggcgac gagcgcctga gcgctctcgg ccaccgcgtc ccgggcgagc
      181 gcgtccgccc ggtaacccgc atgcacctca cggatatcga tctgccgggt cgaagcggct
      241 cgacggacgg tgggctggtg cacgcctgaa cccgacatag ggttgaggat caaacgatcg
      301 acgcggcggc cattgtcgag gtttaccgca cctcggttgg catcggacgg cgatccgttt
      361 tcgcctgctg ttgccggtct tctcggcagc tggcagcgtt ctgttgtggc caagtcgaaa
      421 tcggcgcgtt cggaggacgt ggccccgctg cgggtgagtg acctgctgcg cgtgcccccc
      481 ggcccggtta acctcaatgc ggttgccaca agggagaccc ccggctttcc gggctcagga
      541 aagaccgacg ccacagcggc gattcgccac cttggtccgc acctggcgaa cctgcaagag
      601 cagctctacg ccgaggggca taccggtggc cggcgcagcc tgttgctcgt cctccagggc
      661 atggacaccg ctggcaaggg agccacggtc aagcatgtcc tcgggctcat gaatcccatg
      721 ggcgtgcaat atcacgcgtt caagaagccg acccctcagg agtgcgagca tcatttcttg
      781 tggcgggtga agcggcgatt gccaccgcct ggaattgtcg gcgtcttcga ccgctcccac
      841 tatgaggacg tggtcgtggt tcgggtgcat gagctcgtac cgcccgagat atggtcacgc
      901 cgctacgacg tcatcaaccg cttcgaggag aagctggcca cctcggccac cagaatcgtg
      961 aagtgcttcc ttcacatctc aaaggaggaa cagaagagac ggctgatcgc ccggctcgac
     1021 gaccccacca aacgctggaa atacagcccc gccgacgtcg atgagcgcgc ctattggaat
     1081 gattaccagc aggcgtactc gggcgcgctc ggaaaatgca acaccgaggc cgctccgtgg
     1141 tatgccgtgc ccgccgaccg cagatggtac cgcaattggg cggtcaccag gattctcacc
     1201 gaacagctcg aggaaatggc cctcacctgg ccaaccccta caggctggga cctccaggag
     1261 gaacgcgccc ggttggcagc gggaagcgca acgcggccgc aaccacgcac tccttgagaa
     1321 cggtgtcggc gtggacgtgc tcgatcgagc cgccctcgtc gatgaccacc tcgaccaact
     1381 cgtccacgat gtcgggggcg tgccgtaccg ggcgttcaca caacggacag gtctggccag
     1441 cgagggccag ccagcgatgt taaccgagtc agtgcgccgt aagccctact cggtggtgct
     1501 gttcaacgag gtcgaaaagg cgcaccacga cgttttcaac acgctgctgc aggtgctcga
     1561 tgacggccgg ctcaccgacg cgcagggccg cacggtcaac ttccgcaaca ccgtgctgat
     1621 catgacgtcg agcatcggct cggagtatct gttggaaggg gtcacagcgg aggcagagat
     1681 cacgccgcag gcccgcgagc tggtcatgag cgagttgcgc caccacttcc gcccggagtt
     1741 cctcaaccgc atcgacgaca tcgtgttgtt cagcccgctg acccaagccc agatcgagca
     1801 gatcgtcgag ctgatgttca acgagctgcg tacgcggctc gcagagcgcc ggatcactct
     1861 ggaggtcagc gacgaggcac gccgattcat cgcccgcgag gtcgagaccc gtatcggccg
     1921 agccctcctc gccgacgcga tcccggacgg tgcgaccatc cggatcaagc tcaaggggga
     1981 cgagctgatc gtgacccacg acgaccttcg gtccgcgacc agtacagcga catgatggcc
     2041 atggcagcta cgacggcaac ccgaacggtt acatgcgaga actgcgggaa agtaaaccgg
     2101 gtccccgctg ccgcgcaggg tagaccgcgc tgcggtaact gcaaggccta cctgccatgg
     2161 atcgtcgacg ccagcgacaa tgacttcacc gagatcgccg agaaggcggt gatccccgtc
     2221 ctggtggacc tatgggcgac ctggtgcggg ccatgccacc tggtcagccc cgcactggaa
     2281 cggctggcca gggaaaaagc cggcaagctc aaactggtca aagtcgacat cgagcgtgca
     2341 tccaagctgg cgcagcggtt ctccgtgcga gcggttccga ccctgctggt gctctaccgc
     2401 ggcgaggtga tcgcccgcca gcctggagct gccccgctgg aggcactgcg acgttggctg
     2461 gacgacgcga tgacccgcat acctccaatc cacgcttcgg agacaactaa tggacctgcg
     2521 taggaaggct cggcagctgc cgctgcgatt catcggggag gcggagttct tcacggcggt
     2581 ggtggtggag gacggcgagg tgctcgtcgt atccgtggag gggcttcgcc ccggggatcc
     2641 tcgggctcgg cctggtcatc agcacggtga tcagcagcta cgttaccgcc gccaccgcaa
     2701 ccaaactggg tgtggtgagt cgacccgtcg gttacctcat cgcggttgcg cttgacgtgg
     2761 gattgttctt ggcggcattc cgcctgctca ccgaccggga agttgctacc cgtgacgtgc
     2821 taccgggcgc attgttgtcg ggcgtagtct tctggctgct ccagctgctg tcctcgctga
     2881 tcatctcccg gtacctgcac tccgccgcga ggatctacgg caacttcgcc accgtcatca
     2941 ccatgctgtg gtgggtttta cctgcagagc atcgtcacgc tgctcggtgc acaactcaac
     3001 gtagtagtga aggaacggct gtactcccgc ggactggtcg acacccccgc cacggatgcc
     3061 gactaccggg cctacgacgt ctatgccaag gaacgcgcct accacgacga cgagcgagta
     3121 cacacccatt tctcccggca tgacgccgac gatgggtgac atgtccctcg tggtgcggtg
     3181 cacgcagcaa gatcaaccag ttgacatttc ttgggttccg gctgttcgga ccgtttctgc
     3241 gcgattgcca ggggtactcg cagtacggaa cacattcggc gcgatggctg atagggatgg
     3301 cagcatcgca ttctcggagc caggagttga tatgccggac agtgacttcc gtcggcagct
     3361 ggcgcagcag ctgcgggtgg actcggtacg tgccagcgct gcggccggtt cgggtcaccc
     3421 gagctcctcg atgtcggctg cagacctcat cgcggtgctg ctcgacggct acctgaccct
     3481 ggacttcaga cggccagaag atcctcgaaa cgatcatctg atcttctcga aggggcatgc
     3541 gtcaccgctg tattacgcct tactcaaagc ggtcggtgcg atcactgatg aggagttgct
     3601 cacctaccgc acgttcggta gccggcttga gggtcatccc accccccgga tcccaccgac
     3661 cgatgtggcc accgggtcgt tgggacaagg cttgccggtg ggggtgggtt tggcgctgac
     3721 cggaaagaag ttggatcggc tgccctaccg gatctgggta ctgtgcggag actccgaatt
     3781 ggccgagggc tccatgtggg aggcctttca atacgcggcc tgggcgaaat tggacaatct
     3841 caccgcgatt gtcgatgtca accggctcgg ccagacccgg gagaccatgc ttggctggga
     3901 tcttgagggc tatgcagcgc ggacccgcgc ctttggctgg catccgatcg ttgtcgacgg
     3961 tcacgacgtg gatgccatcg acgcggcttt cgccgaagcc actgcgacca ccggacggcc
     4021 caccgtcgtc ctcgcccgca cgaagaaggg gcgcggggtg aaggctgttg aggaccaggc
     4081 cggcaaacac ggtaagccat tgcaggatcc cgaggcggcg atcatcgagc tcggcggcga
     4141 gcgtgatctc accgtgcggg tggctacgcc gaaggggcct gccgaagtgc accatttccc
     4201 gaccaccggc accgaactgc ccacctggga actcggcgag caggtcgcaa cccgccaggc
     4261 ctacgggcaa gcgctgaccg cgctcggcgg agcgcgcggg gacgtcgtag ctctcgacgg
     4321 cgaggtctcc aactccacag ctactgagct gtttgcccag gcgcatcctg atcggttctt
     4381 cgagatgttc atcgctgagc aacagatggt cgctgcggcg gtgggtatgc aggcccgcgg
     4441 ttgggtcgct ttcgcctcca ctttcggcgc gttcctctcc cgcgcatatg acttcgtccg
     4501 gatggccgcg gtgtcccggg ccaacctgcg cctgtgcggg tcacatgccg gtgtatccat
     4561 tggcgaggac ggcccatccc agatggcgtt ggaggacatg gcggcgctgc gggcggtgca
     4621 cgggagcacc gtgctgcacc cctccgacgc caaccagacc accaagctgg ttgccgagat
     4681 ggccgatcgt cccggtgtct cctacctacg caccctgcgc ggcgctactc cggtgcgcac
     4741 ccccgccgac gaagccgtgc gcatcggcgg cagccgcgtg ctgcgggcca ccgaccacga
     4801 tcacctgacc atcgtggctt gcggaatcac cgtcaccgaa gcggaaaagg ccgctgagat
     4861 cctcgctacc gacggtgttc gagcgcgagt agtcgactgc tactcaatca aaccc
//
LOCUS       DASVXZ010000657         3590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1380702, whole genome shotgun sequence.
ACCESSION   DASVXZ010000657 DASVXZ010000000
VERSION     DASVXZ010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1380702"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(591..893)
                     /locus_tag="VF788_13835"
     CDS             complement(591..893)
                     /locus_tag="VF788_13835"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8935239.1"
                     /translation="MSHTSELRRLPSGGSFEDHPNTLTSANNLALDLWALRQYEAARR
                     LIEDILARRRRVLGEQHPDTLTSASHLAADLRALGQHEAAHQLDQRTGTRHRASDT"
     gene            1184..2341
                     /locus_tag="VF788_13840"
     CDS             1184..2341
                     /locus_tag="VF788_13840"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8935240.1"
                     /translation="MSLNVAVVGAGVIGAAIAADLARGGCTVTVLESGQPATGTSGAT
                     FAWTNAGGKQPRSYFDLNVEGMQAHRRLASSVASCDWYHQSGNLEWKAGAEAQQEQDR
                     KVARLLEWGYQARWLDPKEVHSLEPDLATEMIGSRVAYFPDEGWVDPARLIAALLTTA
                     RAAGAQVRPHSAAVGMSMTGERITSVRTSDGETIRTDAVVNCAGPGAGEVAALAGVDL
                     PMRNTAGLLTYTAPTAVAVARVIHAPQIHLRPDGGGRLLLHNGAGDAAVSTHDDGSRI
                     AEPGAAEAMLDLAQELYPGLRGIKVEASRIGVRVIPIDGLPVLGPSATVENFHFAITH
                     SGVTLCLRVAELVGAEVRGELVDELAPFRHSRLDTRQPPAMSVDHRTRGEP"
     gene            complement(2592..2720)
                     /locus_tag="VF788_13845"
     CDS             complement(2592..2720)
                     /locus_tag="VF788_13845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935241.1"
                     /translation="MTAAVRRDAAFNAHDIETALAGMSDDVAWHWGEYWWSVSIPP"
     gene            complement(2698..3375)
                     /locus_tag="VF788_13850"
     CDS             complement(2698..3375)
                     /locus_tag="VF788_13850"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEX8935242.1"
                     /translation="MTERVHGPGGSTPFGTERDPARVVAFSDAVIAIAVTLLVLEIRP
                     PQDTRHLLHGLATLWPSYLAYVITFMLIGQVWANHHVMFDHIRSADRLVLFLNTVLLM
                     DIAFLPFAASILAQAFRDGQGQRTAVVFHGIAFGLAAVLFNAIWWYARHDRRLLVTTI
                     DSAGVRAIGRRFRLALAWIATGTVLGALLPALGVAVIAAFIPYYWLPIRGEIARARSR
                     RDGGSQA"
BASE COUNT          664 a         1101 c         1204 g          621 t
ORIGIN      
        1 cgtgcgcatc gtcgcgtcac ttagcgttcc tgttagggat cgttgagaag ggttagtgat
       61 gataaaaaat cttttgatcg gtataggtat tatcgcggcc gtgttgttgc tattgccgca
      121 tctgccgata acgtcacggc atgatactgg gtctgatggc ccgggttcgg cgcgggatac
      181 ttttccttgc gagttggacc actcggtcga gtgtacgtgg gggcagtatc ggcaaatagc
      241 cgaagaaaac tgcgccagag atcgggctca gggtggacgg tgtgagatag ttaccgacgg
      301 tcaacgaccg catgcacttc atattccgtc ggatagtgag cttgccgaga tgggtcgaaa
      361 gttcgacgat gccaccaagc gcctgtgtga cgatctggct aacgccggat acggatgtca
      421 cgtcagtcat agctgagctg aaaacgccag tttggtacgc acatgagtag gccgctgtaa
      481 catcgaccat gacgcgtcct agctggtcat gccggggtca tgtagtgcgc atcatgatga
      541 ggtggagtcc ggttggcgct cagccgtcag tcgcacgtgt tgttggctga tcaggtgtca
      601 gaagcccggt ggcgagtccc ggtgcgctgg tcgagctggt gggctgcctc gtgctggcct
      661 agtgctcgca ggtcggcggc gaggtggctg gccgaggtca gggtgtcggg atgctgctca
      721 cctaacaccc gacgccgtcg ggccaagatg tcctcgataa ggcgccgcgc cgcctcgtac
      781 tgcctcaacg cccacaggtc gagagcgagg ttgttggccg aggtcagagt gttggggtgg
      841 tcctcaaacg acccaccgct gggcaaccgg cgcagctctg acgtatgact caagaagatc
      901 tgtcgcgctg acccacgccg cacagcatcc cacccaccag cacggatgga cggcagacga
      961 tcagccgtgc cgagcctggt caactcaccg gccgaggtcg acgcggccct gatcaccgtg
     1021 cgagccctcg cccgcaactg aacagcgcgc tagctccgga tgcccggttt gttatgtttc
     1081 ttggaggtgt ctgagggcct gcccgttgcg ctgcgctcgg cgcgtatcgc gctggtgaac
     1141 tgacgcacct cgtccggcag ttcgacgaaa ggtgttgatc tccatgtcac tgaatgtggc
     1201 cgtggtggga gctggcgtga tcggggctgc gatagccgct gatctcgctc ggggaggctg
     1261 cactgtcacg gtgttggagt cgggtcagcc cgcaacgggg acttcgggag ccaccttcgc
     1321 ctggaccaac gcgggcggca aacagccacg gagctacttc gacctcaacg tcgaggggat
     1381 gcaggcccat cggcgtctcg cctccagcgt ggcgtcctgc gactggtacc accagagcgg
     1441 aaacctggag tggaaggcgg gcgccgaggc acaacaggag caggacagga aggtcgctcg
     1501 gctgctggag tggggttacc aggcacgctg gctcgatccg aaggaagtcc attcgctgga
     1561 gccggacctg gcgaccgaga tgatcggaag ccgagtcgcg tactttcccg acgagggctg
     1621 ggtcgatccc gcccggctca tcgccgcgct gctcacaaca gcccgtgcgg cgggagcgca
     1681 ggtgaggccc cattccgctg ccgtggggat gtcgatgacg ggtgagcgca tcaccagtgt
     1741 gcgtacctcc gatggcgaga cgatacgcac cgacgcggtg gtcaactgtg ccggtcccgg
     1801 agcaggcgag gtcgcagcgc tcgcgggcgt agaccttccg atgcgcaaca ccgcggggct
     1861 gttgacgtat accgcgccca ccgcggttgc ggtcgcacgg gtgatccacg caccgcagat
     1921 ccatctgcgg cccgacggcg gcgggcggct gctcctgcac aacggggccg gggacgccgc
     1981 tgtgtcgacg cacgacgacg gctcccgaat cgccgaaccc ggtgcggcgg aggcgatgct
     2041 cgacctggca caggagctct acccgggtct tcggggaatc aaggtcgagg cgagccggat
     2101 cggcgtgcga gtgatcccga tcgacgggct tcccgtgctc gggccaagcg ccaccgtcga
     2161 gaacttccat ttcgccatca cccacagcgg cgtgactctc tgcctgcgcg tcgcggagct
     2221 ggtcggtgcc gaggtccgcg gtgagctggt cgatgagctg gcaccgttcc ggcactcgcg
     2281 gctggacact cgacagcccc cggcgatgtc ggtcgaccac cgaacccgcg gagagccata
     2341 accatcaccc tgttgccgcc ggaccaggtt gaccaccttc tcgaagaact cgagcaacgg
     2401 ctcgtgcttg cggataccgc ccccgatcac cacgccggcg tagtcctttc gggtcagcgc
     2461 ctccacgatc gttccttcgg cgttctcgtc gagtgccacc aagcacaagt cggcctcgat
     2521 gccatgatca ccgaaacggg cctgaccgcg tgttatcgcc gcctcgaccg gctcagcgtc
     2581 ccagcccgag atcatggcgg gatcgagacc gaccaccagt actcgcccca gtgccatgcc
     2641 acgtcatcgc tcatgccggc cagcgcggtc tcgatgtcat gcgcattgaa ggcggcgtca
     2701 cgcctgactg ccgccgtcac gccgagacct cgccctggcg atctcacccc ggatcggcaa
     2761 ccagtagtag ggaatgaacg cggcaatcac agccacgccg agagcgggta gcagggcgcc
     2821 cagcacggtt ccggtggcga tccaggcaag ggcgagccgg aagcgccggc cgatggctct
     2881 cacaccggcg gaatcgatgg ttgtgacgag cagtcgacga tcatgacgcg cgtaccacca
     2941 gatggcgttg aacaggacgg ctgccaatcc gaacgcgatg ccgtggaaga cgacggcagt
     3001 gcgctgcccc tgtccgtcgc ggaacgcctg ggccaaaatg gaggcggcga acggcaggaa
     3061 cgcgatgtcc atcagcagca cggtgttcag gaacagcacc agccggtcgg cactacggat
     3121 gtggtcgaac atgacgtgat gattggccca cacctgcccg atcagcatga acgtgatgac
     3181 ataagccagg taagacggcc agagggtggc gaggccgtgg agcaggtgcc gggtgtcttg
     3241 cggcgggcgg atctctagga ccagcagagt gacagcgata gcgatgaccg catcgctgaa
     3301 cgcgacgacc cgcgcaggat cgcgctccgt gccgaacggg gttgaccctc ctggtccgtg
     3361 aacacgttct gtcatcgccc aagcgtgagc caccagacgc cgctgcacac agagccgagc
     3421 ggcgtgtcat ccaaccgggc caatcgctga tgccaggagg tggcccactg taggcgggaa
     3481 catcggaggc catgacgccg ttgagggtgg cagaaaggtt gagcggagtc tactcaagta
     3541 ggtcctcggc gattaggtat agtcgcggtc aagcttgagt cagttccagt
//
LOCUS       DASVXZ010000658         4321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_700639, whole genome shotgun sequence.
ACCESSION   DASVXZ010000658 DASVXZ010000000
VERSION     DASVXZ010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4321
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_700639"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1304
                     /gene="secY"
                     /locus_tag="VF788_13855"
     CDS             <1..1304
                     /gene="secY"
                     /locus_tag="VF788_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEX8935243.1"
                     /translation="SALATPDLRRKILFTLGMVVIYRLGATLPSPGVSYVNINQCLER
                     VSKGDNQNVYSLINLFSGGALLKLSVFALGIMPYITASIIVQLLTVVIPRFEVLKKEG
                     QSGQNKLTQYTRYLTIALAVLQSTGIIALAVRGQLFSGCPLPPIPDQSIFNLVVIVVV
                     MTAGTGVIMWLGELITERGIGNGMSLLIFTSIAARIPAEGKNILDSQGPLVFFLVCLF
                     GLAIIASVVFVEQGQRRIPVQYAKRVIGRRMYGGTSTYLPLKVNQAGVIPVIFASSLL
                     YLPDLIARLTSSSSGQPGWWQTFITRYLVDQASWIHIALYFLMIIFFTYFYVAITFNP
                     EERAEEMKKFGGFIPGIRPGRPTAEYLSFVLSRITLPGSLYLGIVAVLPNLFLDLTGN
                     GQNQNFPFGGTAVLIMVGVGLDTVKQIESQLMQRNYEGFLR"
     gene            1304..1855
                     /locus_tag="VF788_13860"
     CDS             1304..1855
                     /locus_tag="VF788_13860"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010315380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEX8935244.1"
                     /translation="MRIVIIGPPGAGKGTQAAVLSEELGVVHISTGDLFRAHVSGETE
                     IGQQVKQYLNSGALVPDEVTNAMVAERLTDDVCREGFLLDGFPRTVAQAQVLDDLLRQ
                     RDCGIDTVVELDAPEDEVVERLLARGRDDDTEDVIRHRQQLYREETAPLLEFYADRLV
                     SVPAVGSVSDVTARALDALRTRA"
     gene            1864..2706
                     /gene="map"
                     /locus_tag="VF788_13865"
     CDS             1864..2706
                     /gene="map"
                     /locus_tag="VF788_13865"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEX8935245.1"
                     /translation="MTGGGVRAVVRRLRGRSNIELKSPGEIEAMRAAGAVVARTLRLL
                     EASAKAGVSTGELDELAEQSIRDAGAVPSFKGYHGFPASICSSVNEQVVHGIPSREQV
                     LAEGDLLSLDCGAILQGWHGDAAVTVHIGTVAEADSRLSMACRTALEAGIAAARPGGR
                     LTDISHAVESAALAAAAVHGTTYGIVADYGGHGIGTAMHMDPFLPNVGRPGRGPRLMP
                     GMALAIEPMLTAGSDKTEELDDGWTVVTVDGSRAVHWEHSVAITEDGPLVLTVDQPDG
                     IRSD"
     gene            2903..3790
                     /locus_tag="VF788_13870"
     CDS             2903..3790
                     /locus_tag="VF788_13870"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019812829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8935246.1"
                     /translation="MGILDGKAIVITGAGQGLGEAYALHAARSGACVVVNDVDDELAE
                     AVADRIVLEGGRAVFSALSVRDPGQASGIIERCLAEFGRVDGLVNNAGLGPHEVLPWE
                     ENSRAAREVIEVNILGVLYCGIAAAKVMHAQGAGSIVNISSGSSFGQRRAGAYSASKG
                     AVASLTYSWALDLEEVGVRVNGVCPLAWTQLVERSPAAQLRCTRERTPDRVAPLITYL
                     LSDLAEGITGQLIRCTGDQLHIVRQPAVKEPVLRCAGWGTEDIAVAFDDVLNHHLEPF
                     GLEKRLPSGLRVAAPHPAT"
     gene            4110..>4321
                     /locus_tag="VF788_13875"
     CDS             4110..>4321
                     /locus_tag="VF788_13875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX8935247.1"
                     /translation="MVDGVSYVDDIEPRTLLVHYLREKLGKIGTVIGCDTSNCGACTV
                     HLDGRSVKACSIFAVQVDGSEITTIEG"
BASE COUNT          734 a         1296 c         1436 g          855 t
ORIGIN      
        1 gctcggctct tgcgacgccg gatctgcgcc gcaagatctt attcactctc ggcatggtgg
       61 tgatctaccg cctcggtgcc acactgccct cgcccggagt ctcgtacgtc aatatcaatc
      121 agtgcctgga gcgggtgtcg aagggtgaca accagaacgt ctactcgctg atcaatctgt
      181 tcagcggtgg ggcactgctg aagttgtcgg tgttcgcgct ggggatcatg ccctacatca
      241 ccgcgagcat tatcgttcag ctgctcactg tggtgatccc tcgcttcgaa gtgctgaaga
      301 aagagggtca atccgggcag aacaagctca cgcagtacac ccgatatctg acgatcgcgc
      361 tcgccgtcct gcaatccacc ggcatcattg ccttggcggt gcgcggtcag ctgttctccg
      421 gttgcccgct cccgccgatc ccggatcagt cgatcttcaa cctggtggtc atcgtcgtcg
      481 tgatgacggc aggtaccgga gtgatcatgt ggctgggcga gctgatcaca gagcggggga
      541 tcggcaatgg gatgtcactg ctgatcttta cctcgatcgc cgcacgcatc cctgctgaag
      601 gcaaaaatat cctggactcg caggggcccc tggttttctt cctcgtctgc ctgttcggcc
      661 tggccatcat cgccagcgtg gtgttcgtcg agcagggaca acgccggatc ccggtacagt
      721 acgccaaacg ggtgatcggg cgccgaatgt acggcggcac ctccacctac ctgccgctga
      781 aggtgaatca ggccggtgtc atcccggtca tctttgcctc gtcgctgctc tatctacccg
      841 acctcatcgc gcggctgacc agttcgtcga gcggccagcc ggggtggtgg cagacgttca
      901 tcactcgata cctcgtcgat caggcgagct ggatacacat cgcgctgtac ttcttgatga
      961 tcatcttctt cacctacttc tatgtcgcca tcacgttcaa cccagaagag cgagccgagg
     1021 agatgaagaa gttcggcgga ttcatccctg gcatccgtcc tggacgcccg accgccgagt
     1081 acctgagttt cgtactcagt cgcatcacgt tgcctggctc gctgtatttg ggcatcgtgg
     1141 ccgtgctgcc caatctgttc ctcgacctga ccggtaacgg gcagaatcag aactttccct
     1201 tcggtggtac cgcggtgctg attatggtgg gagtcgggct ggacactgtg aagcagattg
     1261 aaagccagct catgcagcgc aactacgaag ggttcctccg gtagtgcgaa tcgtcatcat
     1321 cggcccgccg ggggcgggca agggcaccca ggccgcggtg ctgagcgagg aactcggcgt
     1381 ggtgcatatt tcgaccgggg atctgttccg ggcgcacgtc agcggtgaaa cggagatcgg
     1441 ccagcaggtt aagcagtatc tgaattctgg agcgttggtg cctgatgagg taaccaatgc
     1501 gatggtggct gagcggctta ccgatgacgt ctgccgagag ggtttcctcc tcgacggatt
     1561 tcctcgcacg gttgctcagg cccaggtgct ggatgatctg ctgcgccagc gtgattgcgg
     1621 gatcgacacc gtggtggagc tcgatgcgcc tgaggatgag gtggtggagc gcttgttggc
     1681 ccgtggccgc gacgacgaca ccgaggacgt gatccggcac cgccagcagc tctaccgtga
     1741 agagacggcg ccgctgctgg agttctatgc cgatcggttg gtcagcgtgc cggccgttgg
     1801 ttcggtgtca gatgtgacgg cacgggcgct ggacgcgttg cgaactcgag cgtgacacac
     1861 gcaatgaccg ggggcggggt gcgtgctgtg gtgcggcggt tgcggggtag aagcaacatt
     1921 gaactcaagt ctcccggtga gattgaggcc atgcgggctg ccggtgcggt ggtggcccgg
     1981 acgttgcgcc tgcttgaggc cagcgccaaa gccggagtca gcaccgggga gttggacgag
     2041 cttgctgagc agtcgatccg ggacgctggg gcggtgccgt ccttcaaggg ctaccacggg
     2101 ttccccgcgt cgatctgcag ctcggtgaac gagcaggtgg tacacggcat cccgagccgc
     2161 gagcaggtac tcgccgaggg cgatctgctg tctctggatt gtggtgcgat tctgcaaggt
     2221 tggcacggcg acgccgcggt gacggtgcac atcggcactg tcgccgaggc tgacagccgg
     2281 ttgtcgatgg cctgccggac ggcgttggag gccggcatcg ccgccgcgcg cccgggtggc
     2341 aggctgaccg acatctccca tgccgtggag tcggcagcgc tcgccgccgc cgcggtgcac
     2401 ggcacgacgt acgggatcgt agccgactat ggcggtcacg gcatcggtac cgccatgcac
     2461 atggacccct tcctgcccaa cgtgggtcgg cccggccgtg gtccgcggct gatgcccggc
     2521 atggcgttgg cgatcgagcc gatgctgacc gcgggcagcg acaagaccga agaactcgac
     2581 gacggctgga ctgtggtgac tgtagacggg tcccgagcgg tgcactggga acattccgtc
     2641 gccatcaccg aggacggtcc gctggtgctt acggttgacc agcccgacgg tatccgcagt
     2701 gattagccgg ggtattcatg tgtgactagt cgagatgtat ctgttgcgac tagtcggcgg
     2761 tatccgttgt gccgtatggc ggtatccgct cggcgacgcc cagtaaccct tcgctgagcc
     2821 cgtgcgcgtt ccggtgcctt cttccccgaa actggggcat cgccgggcca tcgggcaccg
     2881 gccatccgaa gggcgggcag tcatggggat cctcgacggc aaggcgatcg tgattaccgg
     2941 agcaggccag ggtctgggag aggcttatgc gctgcacgcc gcacggtccg gcgcctgtgt
     3001 cgtggtcaac gacgtcgacg acgaactggc cgaggcagtc gctgaccgga tagtcctcga
     3061 gggtggccgg gcagtattca gcgccctttc agttcgtgat ccgggccagg ccagcgggat
     3121 cattgagcgt tgtctcgccg agttcggccg ggtcgacggc ctggtgaaca acgccggact
     3181 tggcccgcac gaggtgctgc cgtgggaaga gaacagtcgc gccgcccgcg aggtcatcga
     3241 ggtcaacatc ctgggagtgc tctattgcgg aattgcggcc gcgaaggtga tgcacgcaca
     3301 gggtgccgga tcgatcgtca acatctcgtc gggctcgtca ttcggtcaac gccgcgcggg
     3361 tgcttactct gcgtccaaag gcgcagtggc gtccctcacc tactcctggg cgctggatct
     3421 tgaggaggtg ggggtccggg tcaacggggt ctgcccgctg gcctggacgc agctggtaga
     3481 acgttcaccg gccgcccagc tgcgctgcac gcgggaacgc acccccgacc gggtagctcc
     3541 gctaatcacc tacctgctgt cggacctcgc cgaggggatc accgggcagc tcatccggtg
     3601 taccggggac cagttgcaca tcgtgcgtca gccggcggtc aaagaaccgg tgctgcgttg
     3661 tgcaggctgg ggtaccgagg acatcgccgt ggcttttgac gatgtcctga atcaccacct
     3721 cgaacccttc ggcttggaga agcggctgcc ctccgggctc cgagtagcgg cccctcatcc
     3781 ggcgacgtga cctgatggtg ctctaggctt agtagcttcc gcgtaacgat gtggctacga
     3841 ccacggtggg ctcaccgcct tcgcggagat cttccattta tgaatccgca tttgcggtgg
     3901 tccttactga tcacggaaat acattctgag ctgtgggttt ctcgtaagcc gacgccattg
     3961 cggcggcatc gaatgcgcgg tgggataggt cacagtcggc acaccggcgt gacggctcct
     4021 cggtgactcc ggtcgtcgag ggtcacccac cacacggtcg gcggccccga ccgggcgagg
     4081 agtagagctc cgtgacacgc attaccgtca tggtcgacgg tgtctcctac gtcgacgaca
     4141 ttgagccacg aaccctgctg gtgcactacc tgcgggagaa gctgggaaag atcggcacag
     4201 tcatcggctg cgacaccagc aactgtggcg cctgcaccgt gcatctggat ggccgcagcg
     4261 taaaggcctg ctcgattttc gccgtccagg tcgacggtag cgagatcacg accatcgaag
     4321 g
//
LOCUS       DASVXZ010000659         2710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_753247, whole genome shotgun sequence.
ACCESSION   DASVXZ010000659 DASVXZ010000000
VERSION     DASVXZ010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753247"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..894)
                     /locus_tag="VF788_13880"
     CDS             complement(58..894)
                     /locus_tag="VF788_13880"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF015998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935248.1"
                     /translation="MKTQQGDLLVTALYTSQVWTWGGLSHAHLLANPDAQHVFDTANA
                     ALTAARTPDHQLAPLHQSLLHRHAMIDHLLSTSGYQQVVELAAGLSRRGAATTSDVQV
                     RYTEIDLPHVVELKRELLRRTDEGRAVLSRPGLRLVEGDAETTALEPFVRRDEPVFVI
                     AEGLMMYLTADARRRLFAKVQQLAAITGELRLVFDLVPTSEQAEPDIVEQMIRMATGG
                     RGYEHDAYTRDDIVTALHEAGFDDIEVVASSDVAREWGLPHTDGQTLVVLFVAHASSQ
                     GT"
     gene            complement(894..2408)
                     /locus_tag="VF788_13885"
     CDS             complement(894..2408)
                     /locus_tag="VF788_13885"
                     /inference="COORDINATES: protein motif:HMM:TIGR02946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="wax ester/triacylglycerol synthase family
                     O-acyltransferase"
                     /protein_id="HEX8935249.1"
                     /translation="MTTDLHEAVKPHYRPDRLNGVDDAFLCLELPEQPMHIMALAILR
                     PAERDGGTSSAITLDDLRRRVARQLDVLPAFRLRVKPLPFSLHHPVFVAVSNLDLDHH
                     IRRVKLLAPGGPEELGQLYADLAERCLDRSRPLWRITLVDALDSGRQALIFEIHHCLM
                     DGAAIRTTFSRLFFSEDTQRAAAPCACRPQRAPGGTRLVVDALADHGWGLAQLPALVR
                     KTKRGMAATRKRNARSQIAVPRPRADTPLCSINAGFTSERRFARSSLPLADVKLVKDA
                     AGVTVNDVVLSVVAGALRDYLQRRNDLPDRPLVANVPVGLDTPGQPPRAVGNHIGSLV
                     TSLATNVADPWARLETISAVTRESKRRLDLLGRQIPGEWLDIVPPAIISAALQRINRR
                     RRSHPEQLHTNVTISTLRGPTRPWSFGSAVVEEMYLTAPPNSGVGITFAVWDYAGSLL
                     VGILACADSVEDPGEVAVGLSSSLSELVAIARCRQEGSASLVGAAGTHVTGGDR"
     gene            complement(2405..>2710)
                     /locus_tag="VF788_13890"
     CDS             complement(2405..>2710)
                     /locus_tag="VF788_13890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HEX8935250.1"
                     /translation="PHLDAVVSHAGHNTVCEALAYGVPLVLAPIRDDQPVIARQVTDA
                     GAGVRVRFGRVGTTELQEAITTVLDDPSYRGAARRVQASFAAAGGAATAADHLEKLL"
BASE COUNT          476 a          831 c          929 g          474 t
ORIGIN      
        1 ccgagcgtcg cgacgttggg tattccgcgg tcgaagcgcg tgccctgaga gtcacggtca
       61 ggttccttgc gacgacgcgt gggcgacgaa cagcacaacg agcgtttgcc catcggtatg
      121 cggtaagccc cattcgcgtg cgacatcgct agacgccacg acctcgatat cgtcgaagcc
      181 tgcctcgtga agcgctgtca cgatgtcgtc ccgggtatac gcgtcgtgct cgtagcctcg
      241 cccaccggtc gccatcctga tcatctgctc cacgatgtcg ggctcggcct gttcactggt
      301 aggcaccaga tcgaagacca accgcagctc tccggtgatg gccgcaagct gctgcacctt
      361 cgcgaacagg cgacgacggg cgtcggccgt caggtacatc atcaggcctt ctgcgatgac
      421 gaataccggc tcgtcccgtc gcacgaacgg ttcaagcgct gtggtttcgg catcgccttc
      481 gacgaggcgc aaccctggtc gggagagcac tgcgcggccc tcgtcggtgc gccgcagaag
      541 ctcccgtttg agctccacga cgtgcggcaa gtcaatctcg gtgtaacgca cctgcacatc
      601 gctcgtggtg gcggctcccc ggcgagacag ccctgcggcc agctcgacga cctgctggta
      661 gcccgaggtg ctcaacaggt gatcgatcat cgcatggcga tggagcagcg attggtgcag
      721 cggcgcaagc tggtgatcgg gcgttctcgc cgcggtcagc gcagcgttgg cggtgtcgaa
      781 cacgtgctgg gcatccgggt tcgcgagcag atgcgcgtgg gacagaccgc cccacgtcca
      841 cacctgcgag gtgtacagcg cggttactaa cagatcacct tgctgggtct tcatcagcgg
      901 tcacctcctg tgacgtgggt accggccgcg ccgacgagcg aagcggaacc ttcttgacgg
      961 catcgggcga tggcgacgag ttcactgagc gagctagaca acccgacggc cacctcaccg
     1021 ggatcttcaa ccgaatcggc gcaggcgagg atcccgacta acagcgagcc tgcgtaatcc
     1081 cataccgcga aggtgatgcc tacaccgctg ttcggcggcg ccgtgaggta catctcttcg
     1141 acaacggcag acccgaagga ccacggtcgt gtcgggccgc ggagggtaga gatcgttacg
     1201 ttggtatgca actgctcggg atggctgcga cgacgtcgat tgatgcgctg gagggcagcg
     1261 gagatgatgg cgggcggcac gatgtccagc cactcaccgg ggatctgccg acctaggaga
     1321 tctaggcggc gtttggactc ccgagtcacc gcgctgatcg tctcaagccg agcccaggga
     1381 tccgctacat tggtcgccag cgaggtcaca aggctcccga tgtggtttcc gacggcccgg
     1441 ggaggttggc caggtgtgtc cagcccgacg ggtacgtttg ccacgagcgg tcggtccggt
     1501 aggtcgtttc gtcgctggag gtagtctcgt aatgctcccg ctacgacgct cagtacgacg
     1561 tcgttcactg tgacaccggc ggcgtccttt acgagcttga cgtcagccag cggcagtgaa
     1621 gagcgtgcga agcggcgctc ggacgtgaag ccggcgttga ttgagcacag cggagtgtcg
     1681 gctcgtggcc gggggacagc aatctgagat ctggcgtttc tttttcgggt ggcggccatt
     1741 ccgcgtttag tcttacggac cagcgctggc agctgggcca gtccccagcc atgatcggcc
     1801 aacgcgtcga cgaccaggcg cgtgccgccc ggggcgcgct gtgggcggca cgcgcaaggt
     1861 gcggctgccc gctgagtgtc ctcgctgaaa aacaagcgcg agaaagtggt gcggatagca
     1921 gcaccatcca tgaggcagtg gtggatctcg aagatgagtg cctggcggcc actgtcgagt
     1981 gcgtcgacga gagtgatgcg ccagagcgga cgcgaccgat cgaggcagcg ctcagcgagg
     2041 tctgcgtaca gctggcctaa ctcctccggg cctcccggcg cgaggagctt aacgcggcgg
     2101 atgtgatggt caaggtctag gtttgagact gcgacaaaca ccggatggtg gaggctgaag
     2161 ggcagtggct tgacgcgcag ccggaatgcc ggcaagacat cgagctgccg agccacgcgc
     2221 cggcgaaggt cgtcgagggt gatcgcgctc gatgtaccac catcgcgctc ggcagggcga
     2281 aggatcgcca gcgccatgat atgcatgggc tgctccggca gctccaggca gaggaacgcg
     2341 tcgtccacac cgttcaggcg atccggccgg taatgtggct tgacggcttc gtggagatcg
     2401 gtagtcatag gagtttctcc aggtgatcgg ccgcggtggc ggcacccccg gcggcagcga
     2461 acgaggcctg cacgcgccgc gccgcgccgc ggtatgacgg gtcgtcgagt acggttgtga
     2521 tggcttcttg caactcggtg gtgccgactc gcccgaaccg cactcggacc cctgcgccag
     2581 cgtcagtgac ctggcgggcg atcacgggct gatcgtcgcg aatcggggcc aggacgagcg
     2641 gcacgccgta cgcgagcgct tcacacaccg tgttgtggcc agcgtggctt accacggcat
     2701 ccaggtgcgg
//
LOCUS       DASVXZ010000660         7919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1239447, whole genome shotgun sequence.
ACCESSION   DASVXZ010000660 DASVXZ010000000
VERSION     DASVXZ010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7919
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1239447"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VF788_13895"
     CDS             <1..406
                     /locus_tag="VF788_13895"
                     /inference="COORDINATES: protein motif:HMM:NF016144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GrpB family protein"
                     /protein_id="HEX8935251.1"
                     /translation="VLDVQVVVDDLAVAEHLAEDLVGAGLVRRDGRWWDSARDGAAWD
                     KAMATNADPTRAVNCHVRLTGSPTWREAVLLRDWLRAHPGGVEQYAQLKHRLAEQLWD
                     SVEDYADAKTPFVATALDRAEQWALRTGWRVA"
     gene            complement(412..960)
                     /locus_tag="VF788_13900"
     CDS             complement(412..960)
                     /locus_tag="VF788_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEX8935252.1"
                     /translation="MTAPRGLEAETAPHIHPPKIEVFDLEAMTNTDPKGIVRAVREYR
                     IEPFGLYLARDVIDHRSIRSLESWLLPELGLRVTDWFYSPGHEWEDHFYIDVVRIDID
                     ARCWRTEDHYLDLIVRPGRGVDVVDTDELLDAVLAGLLDPASAQEALTTTYRTLDGLA
                     RHDYRLDRWLPTVGVRPTWSRR"
     gene            1092..3263
                     /gene="uvrB"
                     /locus_tag="VF788_13905"
     CDS             1092..3263
                     /gene="uvrB"
                     /locus_tag="VF788_13905"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005457962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEX8935253.1"
                     /translation="MTEAAAIPRDLLPRSGFRPLARTSRAPGRFRMVSDYAPAGDQPA
                     AIDELQRRITAGERDVVLLGATGTGKSATTAWLIERVQRPTLVMAPNKTLAAQLAHEL
                     RDYFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINDDVERLRHSATMSLLTRRD
                     VVVVASVSCIYGLGTPQEYLNQSIHVPVGGEIGRDALLRALVDIQYTRNDLAFARGTF
                     RVRGDTVEVIPAYEELAVRIDFFGDEVESLYYLHPLTGEVVREVPELRIFPATHYVAG
                     PERMERAISGIESELEERLAALDKQNKLLEAQRLRMRTHYDVEMMRQVGFCSGIENYS
                     RHIDGRAAGSAPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDSSRKRTLVEHGFRL
                     PSALDNRPLSWEEFQDRIGQTVYLSATPGPYEMAQAGGEFVEQVIRPTGLVDPEVVVK
                     PTKGQIDDLVHEVRIRAERDERVLVTTLTKKMAEDLTDYLLELGIRVRYLHSEVDTLR
                     RVELLRQLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRA
                     ARNVSGEVHMYADTITDSMRRAIDETNRRRAKQVAHNVEHGVDPQPLRKKINDILERV
                     YAEASDTSETVAVGGSGRNASRGKRAAGEPGRARGSAGVRESRDTSSMPRAELADLIQ
                     QLTDQMMGAARELQFELAARLRDEIADLKKELRGMDVAGIH"
     gene            complement(3260..4081)
                     /gene="tesB"
                     /locus_tag="VF788_13910"
     CDS             complement(3260..4081)
                     /gene="tesB"
                     /locus_tag="VF788_13910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006637 - acyl-CoA metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HEX8935254.1"
                     /translation="MDLERIEDDIFRGVSPTDSLPRVFGGQVAGQALIAAGRTVPVER
                     NVHSLHAYFIRAGDSRVPIVYNVDRIRDGQSFSTRRVVAIQHGQLIFALSASFQLPEQ
                     GLEHADEMPDVPPPEQLDDWASWARRSGDTQAPITRTPRPFDLRFITPPIWAGAPARI
                     ESAAHDQLWMRADGVLPDGPLLHVCVLAYASDLTLLWSVAAPHGHALGQDVMAATLDH
                     AMWFHRPFRADDWVLCDYTSPSATGGRGLATGRFFSRDGKLIASVVQEGVVRVRR"
     gene            complement(4179..5603)
                     /gene="pyk"
                     /locus_tag="VF788_13915"
     CDS             complement(4179..5603)
                     /gene="pyk"
                     /locus_tag="VF788_13915"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005465350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEX8935255.1"
                     /translation="MSRRAKIVCTIGPVTATPERIRELVRVGMDVARLNFSHGSHADH
                     ARVYSMVREASDEVGRAVGILADLQGPKIRLGRFVTGPVQWRTGDEVRVTVEDVPGTH
                     DRVSTTYAGLAKDAREGDLLLVDDGKIALLVRKVEDAEVVCEVIEGGTVSDNKGLSLP
                     GMNVSVPALSEKDFADLEFALRLRVDLVALSFVRSPADIDLVHRMMDAVPGGRLPVIA
                     KLEKPEAVDNLEAIVLAFDGVMVARGDLGVELPLENVPLVQKRAVQVARENAKPIIVA
                     TQMLDSMIGNARPTRAEASDVANAVLDGADAVMLSGETSVGRYPIESVQTMSRIVEAV
                     EVGSPHVPPLNHVPRTKRGVLSYAARNIGEQLEAKALVAFTQSGDTVRRLARLHTHLP
                     LLAFTPEAPVRNQLALTWGTETFLVPRVETTDAMVRQVDQAMLSIGRYQRGDLVVIVA
                     GSPPGTVGSTNLIRVHRLGEEDLG"
     gene            complement(5666..5836)
                     /locus_tag="VF788_13920"
     CDS             complement(5666..5836)
                     /locus_tag="VF788_13920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935256.1"
                     /translation="MLVVTERGTDGGRWNRSWPPDEVLHERACLDRIQEAWRTTQPLV
                     EWLGRQVGVAAI"
     gene            complement(6393..6824)
                     /locus_tag="VF788_13925"
     CDS             complement(6393..6824)
                     /locus_tag="VF788_13925"
                     /inference="COORDINATES: protein motif:HMM:NF020922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 family protein"
                     /protein_id="HEX8935257.1"
                     /translation="MLWRCSREPEFGAGKIFRPHRDVRFSNDKSPYKTHCSAVINVPG
                     GAFYTQVGADGLRRVLAAVSISRTALQRGAEMLRSRPRGSSADHPRMDLLRHRSLYLW
                     RSWPPEEVLDERACLDRIQEAWRTTRPLVEWLARHVGVAAI"
     gene            complement(6905..7780)
                     /gene="lgt"
                     /locus_tag="VF788_13930"
     CDS             complement(6905..7780)
                     /gene="lgt"
                     /locus_tag="VF788_13930"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEX8935258.1"
                     /translation="MFFASIPSPDRGVWYLGPVPIRAYALCIIAAIVVAILWGERRWQ
                     ARGGQAGAVTDIAVFAVPFGLVGGRLYHVATDWEKYFGPSGDPLAALEVWKGGLGIWG
                     AIALGALGGWIGCRRKGIPLPALMDAVAPAIVVAQAIGRLGNYFNQELYGGPTSLPWG
                     LEIRDRLNPATGILDPLNGIAQGPPVEIVHPTFLYEMLWNLSVAALVVWADRRFQLGH
                     GRAFALYVAGYTAGRFWIELMRSDPATMIFGLRINVITSAVVFLGALVYLTAARRGRE
                     DPATLAVPNEPALAS"
BASE COUNT         1524 a         2694 c         2435 g         1266 t
ORIGIN      
        1 tgtgctggat gtgcaggtgg tagttgacga tctcgccgtg gcggaacacc tcgccgaaga
       61 cctggtcggc gcaggcctgg tcaggcggga tggtcgctgg tgggacagcg cacgcgacgg
      121 cgctgcttgg gacaaagcaa tggcgaccaa cgcagatccc acccgcgccg tcaactgtca
      181 cgtccggctg accggctctc caacgtggcg tgaggcagtg ctgctcaggg actggctacg
      241 cgcccatccc ggcggtgttg aacagtacgc ccagctcaaa caccggttgg cggaacagct
      301 ctgggacagt gtcgaggact acgccgatgc gaagacccca ttcgtggcca ccgcgctgga
      361 tcgggccgag cagtgggcgc tgcgaaccgg ctggcgggtg gcctgagccg gtcagcgccg
      421 gctccaggtc ggccgcactc ccaccgtcgg cagccatcga tccaaccggt agtcgtgccg
      481 ggccaaaccg tccagtgtcc ggtacgtggt cgtgagcgcc tcctgcgccg aggccggatc
      541 gagtaggcca gcgaggactg cgtcgagcaa ctcatcggtg tcgaccacgt ccaccccgcg
      601 gccggggcgc acgatgagat ccaggtagtg gtcttcggtg cgccaacagc gcgcatcgat
      661 gtcgatgcgc accacgtcga tatagaagtg gtcctcccac tcgtgcccag gagaatagaa
      721 ccaatcagtg acccgcaacc ccagctcggg cagtagccac gactccagcg aacggatcga
      781 ccggtgatcg atgacgtccc gggcgaggta gagaccgaat ggctcgatcc ggtattcgcg
      841 gaccgcgcga acgatcccct tggggtcggt gttggtcatg gcctccagat cgaaaacttc
      901 gatcttggga ggatgaatgt gtggggcggt ctcggcttcc aatccgcgcg gggccgtcat
      961 aatgctcgac cctacgggaa cgccgagcgt gtactcgcgg ataacccata tgcgccagct
     1021 ccggcgccta cctgccccac gccaccgggt tcaagcgcgg actgtcaggg tcgcggccta
     1081 ccctcgatgc tatgaccgaa gctgccgcca tcccgcgcga cctgctcccc cgctccgggt
     1141 ttcgaccgct cgccagaacg tcacgggcac cgggtcggtt ccgcatggtc agtgactacg
     1201 cgccagctgg tgaccaaccg gccgcgattg acgagttgca gcgccggatc accgccggcg
     1261 agcgtgacgt cgtactcctg ggcgcgaccg gaacggggaa gtcggccacc accgcttggc
     1321 tcatcgaacg ggtgcagcgt cccacgctgg tgatggcgcc gaacaagacc ctcgccgcgc
     1381 agctcgccca cgagctgcgg gactacttcc cggacaatgc agtggagtat ttcgtctcct
     1441 actacgatta ctaccagccc gaggcttacg tcccgcagac cgacacgtac atcgagaagg
     1501 attcctcgat caacgacgac gtggagcggt tgcggcactc agccacgatg tcgctgctca
     1561 cccgccggga cgtcgtcgtc gtcgcctcgg tgtcctgcat ttacgggctc ggtacgccgc
     1621 aggagtacct gaaccagtcg atccatgtgc cggtcggtgg tgagatcggg cgggacgcgt
     1681 tgctccgtgc gctggtcgat atccaataca cccgaaacga cctggccttc gcccgtggaa
     1741 cattccgcgt ccgtggggac acggtcgagg tcatcccggc ctatgaggag ctcgcggttc
     1801 gcatcgactt cttcggtgat gaggtcgagt ctctctatta cctgcacccg ctcaccggtg
     1861 aggtggtgcg agaggtgcct gagctgcgga tcttcccggc cacgcactat gtcgccggac
     1921 cggagcggat ggaacgcgcc atctccggta tcgagtccga gttggaagag cggctggccg
     1981 cgttggataa gcagaacaag ctgctggaag cacagcggct gcggatgcga acgcactatg
     2041 acgtcgagat gatgcggcag gtcggattct gctcgggcat cgagaactac tcgcggcaca
     2101 tcgacgggcg cgcggccggc tcagctccag ccacgttgct ggactacttc ccggaggatt
     2161 tcctgctggt catcgacgaa tcgcatgtca cggtgccgca gatcggcggg atgtacgagg
     2221 gcgactcttc ccgtaagcgc accctcgtgg agcacggttt ccggttgccc tccgcgctgg
     2281 acaaccggcc gctgagctgg gaggagttcc aggaccggat cggtcagacg gtgtacttgt
     2341 cggccacccc ggggccatat gaaatggcac aggccggtgg cgaattcgtc gagcaagtga
     2401 tccgtcccac cggtctggtg gaccccgagg tggtggtgaa accgaccaag gggcagatcg
     2461 atgacctggt gcacgaggtg cggatccgcg cagagcgcga cgaacgcgtg ttggttacca
     2521 cgctgaccaa gaagatggcc gaggacctca ctgattattt gcttgagctc ggcatccggg
     2581 tccgttacct gcattccgag gtggacacgt tgcgtcgggt ggagttgctg cggcagctgc
     2641 ggctcggtga gttcgacgtg ctggtcggga tcaacctgct ccgcgagggc ctggacctgc
     2701 ccgaggtgtc gctggtggcg attctggacg cggacaagga aggtttcctg cgcagcggaa
     2761 cctcactgat ccagaccatt ggccgagctg cgcggaacgt ctccggagaa gtgcatatgt
     2821 acgccgacac catcaccgac tcgatgcgcc gggccatcga cgaaaccaac cggcgacgag
     2881 ctaagcaggt cgctcacaac gtcgagcacg gagtggaccc gcaaccacta cgcaaaaaga
     2941 tcaatgacat tctcgaacgc gtctacgccg aggccagcga cacctcggag acggtggcgg
     3001 tcggcggatc cggccgcaac gcctcgcggg gcaagcgtgc cgccggtgaa ccggggcggg
     3061 cgcggggtag cgcgggcgtg cgagagagcc gggacacttc ctcaatgcct cgcgccgagc
     3121 tcgcagacct gatacagcag ctcaccgacc agatgatggg ggcagcgcgg gagctacagt
     3181 tcgagctggc cgcccggctg cgcgacgaga tcgccgatct caagaaggag ctccgcggca
     3241 tggacgtcgc tggtatccac tagcggcgga cccgcaccac gccctcctgc accacgctgg
     3301 cgatcaattt gccatcgcgg ctgaagaagc gtccggtcgc caatccccgg cctcccgtcg
     3361 ccgatggtga ggtgtagtcg cagagcaccc agtcatcggc ccggaacggg cggtggaacc
     3421 acatcgcatg gtccagggtg gcagccatca cgtcctggcc caacgcgtga ccgtgcggag
     3481 cggccaccga ccacagcaaa gtgaggtccg aggcgtaggc aagcacacag acgtgcagca
     3541 agggaccgtc gggcaagacg ccgtcggctc gcatccacag ttggtcatgc gctgctgact
     3601 cgattcgcgc cggtgcgccg gcccagattg gtggtgtgat gaagcgcagg tcgaagggac
     3661 gcggcgtccg ggtgatcggg gcttgggtgt caccgctgcg gcgggcccag ctcgcccagt
     3721 cgtcaagctg ctccggcggt ggaacgtcag gcatctcatc ggcatgctct aggccctgct
     3781 ccggcagctg gaaggacgcg gacagcgcga agatcagctg gccgtgctgg attgcgacca
     3841 cgcggcgcgt gctgaacgac tgcccgtcgc gaatccggtc cacgttgtac acgattggta
     3901 ctcgcgaatc gccagcccgg atgaagtaag cgtgcaggga atgcacgttg cgctccaccg
     3961 ggacggtgcg gccggccgcg atgagcgctt gacctgcgac ctggccgccg aagacccgtg
     4021 gtagggagtc cgtgggactc acaccacgga agatatcgtc ctcgatgcgc tcaaggtcca
     4081 tcaatgccac caggcggtcc accacaggtt gtccccgtgg cacaccgtcg gtcgcccgcg
     4141 gagtgtcgat ccaccttttc cgcgaagcgt cggcagcgtc agccaagatc ctcctcaccc
     4201 aggcggtgca cccggatgag gttagtcgag ccgactgtgc ccggtggtga tccggcgacg
     4261 atcacgacca gatcgccgcg ctggtagcgc ccgatcgaca gcatcgcctg gtccacctgc
     4321 cggaccatcg cgtcggtggt ctcgaccctt ggcacgagga aggtttcggt cccccaggtc
     4381 agcgcgagct ggttacgcac cggggcctcc ggcgtgaaag ccaacaacgg caggtgcgtg
     4441 tgcaaccggg ccaaccggcg cactgtgtcg ccggactggg tgaaggccac cagcgccttg
     4501 gcctccagct gctctccgat gttgcgggcc gcgtaggaca gcacaccccg cttggtccgc
     4561 ggcacgtggt tgagcggtgg aacgtgcggc gagccgactt cgacggcctc gacgatccgg
     4621 ctcatggtct ggaccgactc gatcgggtag cgaccaacac tggtctcccc ggacagcatc
     4681 accgcatcag ccccatcgag caccgcgtta gccacatccg aggcctccgc ccgggtcggc
     4741 cgggcattac caatcatcga atccagcatc tgcgtggcca caataatcgg cttagcgttc
     4801 tcccgggcca cctgaaccgc ccgcttctgc accaacggca cattctccaa cggcaactcg
     4861 accccaagat ccccccgcgc caccatcacc ccatcaaacg ccaacacaat cgcctcgaga
     4921 ttatccaccg cctccggctt ctccagcttc gcaatcaccg gcaaccgccc acccggcacc
     4981 gcatccatca tccgatgcac caaatcaata tccgccggcg accgcacaaa cgacaacgcc
     5041 accaaatcca cccgcaaccg cagcgcaaac tccagatcag caaaatcctt ctccgacagc
     5101 gccggcaccg acacattcat ccccggcaac gacaacccct tattatcact gaccgtccca
     5161 ccctcaataa cctcacacac cacctcagcg tcctccacct tgcgcaccag caaggcaatc
     5221 ttcccatcat ccaccagcaa caaatcaccc tcacgggcat ccttagccaa ccccgcatac
     5281 gtagtggaaa cccggtcatg agtacccgga acatcctcca ccgtcacccg cacctcatca
     5341 ccggtgcgcc actgcaccgg accggtcaca aaccggccca accggatctt cggcccctgc
     5401 aaatcagcca gaatccccac cgcccgcccc acctcgtcac tggcctcccg caccatcgag
     5461 tacacccgag catgatcagc atgactgcca tgactgaagt tgagacgagc aacgtccatc
     5521 ccgacccgca ccaactcccg gatcctctcc ggagtagcgg tcaccggacc aatcgtacaa
     5581 acgatcttcg cacgtcgact catagtggga cagagtagcg gtgtatctgg atcaacccga
     5641 tggctggcag gtgtccaagg catgtctaga tcgcagctac accgacctgc ctacccagcc
     5701 actcgacgag tggctgggta gtgcgccagg cctcctggat gcgatccagg caggcgcgct
     5761 cgtggagcac ctcgtccggc ggccaggatc ggttccaccg accaccgtcc gtgccgcgtt
     5821 ccgtaactac cagcacttgc cgagaggtcc gcgacgagga ctatcagcct ccagagcagt
     5881 tcgggcgacc atgcgctcgc taccgaccgt gtcgaaaacg ccagaggacg atgctcacag
     5941 caggagacca caactcacgc tgcccgctac agaaacatat acccacagag gtgccatcat
     6001 tgtcagcaga acgaccagca cccccgtcgc ggcggccagc aacacgatca acatcagaac
     6061 tagagcggga tcaccgacaa ctcttcagat cagggcaacc aaggtctgcg gatcatcggt
     6121 ccggatcttg atcggctccc gcggccgacc tgatggtctt cccccattct tgtggggcct
     6181 ccttgccgcg tccctctact ctagccgtgt cgctgctctt cctgtgcctg gaagcctgaa
     6241 ggacacggcg ccgagcggcc tccctgttag cgcagggggg ccgcttctca tgagagccgc
     6301 cccgtgaaca ccactcaacg cccgtctgaa cagtagcgac agtaacggtg catctggatc
     6361 aatcccatgg ctggcaggtg tccaaagcat gtctaaatcg cagctacgcc gacgtgcctg
     6421 gctagccact cgacaagtgg tcgggtggtg cgccaggcct cctggatccg atccaggcag
     6481 gcccgctcgt caagcacctc ctccggcggc caggaccgcc acaggtacaa cgagcggtgc
     6541 cgcagcagat ccattcgtgg gtggtctgcc gagctacccc ggggacgcga gcgcagcatc
     6601 tccgcgccgc gctgcagcgc ggtcctgctg atagacacag ccgccagcac ccggcgcagc
     6661 ccatcggctc ccacctgggt gtagaaagcc ccgccgggca cgttgatcac ggcactgcag
     6721 tgcgtcttgt acgggctctt gtcgttgctg aaccggacgt cacgatgcgg acggaagatc
     6781 ttcccagcgc cgaactccgg ctctctcgag caacgccaga gcatcggggc gcgaacctga
     6841 tcgtcgtaga ctagccgcgc gcgattagcc cgacacaccg cgtgacgccg acacacgcag
     6901 gggactacga ggcgagtgcc ggctcgttcg gaaccgccag tgtggccgga tcctccctgc
     6961 cccggcgagc cgccgtcagg tagaccaatg caccgaggaa caccactgct gaggtgatca
     7021 cattgatgcg cagcccaaaa atcatcgtgg ccggatcgga acgcatcagc tcgatccaga
     7081 accggcccgc ggtgtaaccg gctacataga gtgcgaaggc gcgcccgtga ccaagctgga
     7141 aacgccggtc ggcccatacg acgagcgcgg cgacactgag gttccagagc atctcgtaga
     7201 ggaaggtagg gtggacgatc tccactggcg gaccctgagc gatcccgttg agtgggtcaa
     7261 ggatgccggt ggccgggttc aaccggtcac gaatctccag cccccagggc agcgaggtcg
     7321 ggcccccgta gagctcctgg ttgaagtagt tgcccagccg gccgatcgcc tgtgcaacga
     7381 cgatggccgg agcgaccgcg tccatgaggg ccggcagcgg gatacccttg cggcggcagc
     7441 cgatccagcc tccgagggct ccgagcgcga tcgcccccca gatgccgagc ccgcctttcc
     7501 agacctccag ggctgcgagg gggtctccgc tcggcccgaa gtatttttcc cagtccgtgg
     7561 ctacgtggta tagccggccg ccaaccagac cgaacggcac cgcgaacacc gcgatgtcgg
     7621 tcaccgcccc agcctgccct cctctggctt gccagcgacg ttcgccccac aggatcgcca
     7681 cgacgatcgc ggcgatgatg cacagggcgt aggcgcggat cggcaccggt cccaggtacc
     7741 agaccccccg atccggactg ggtatcgatg cgaagaacat tgcagtaagc accgcgacac
     7801 ggtatctccc gcccagactg cggacgcgtt cgcatacacc cattcagcgg gctcagcctg
     7861 tcagcgggaa ccacaaccac gctgagcccg ctcaatggcg gacgggaggg atcaggccg
//
LOCUS       DASVXZ010000661         5374 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1597990, whole genome shotgun sequence.
ACCESSION   DASVXZ010000661 DASVXZ010000000
VERSION     DASVXZ010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5374
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1597990"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..611
                     /locus_tag="VF788_13935"
     CDS             <1..611
                     /locus_tag="VF788_13935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005448415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase dimerization domain-containing
                     protein"
                     /protein_id="HEX8935259.1"
                     /translation="SVDPVVLAAMIVLRLQTIVSREIAPVEPVVLTVGSIRSGSKSNV
                     IPDRAELQLNIRTYSEQTRRSMLDAVRRIVTAECQASGCLKDPDFELFDRFPITDNDA
                     ATTERVAGAFAEFFGDRAQPMGQQTASEDLSDIPTALGVPYTYWGIGGIDPDAYRTAA
                     EAGRVSQDIPVNHSANFAPIIQPTLDTGTQALVVAALAWLAQ"
     gene            complement(636..1268)
                     /locus_tag="VF788_13940"
     CDS             complement(636..1268)
                     /locus_tag="VF788_13940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HEX8935260.1"
                     /translation="MTTESPLLLALDLTGTFVFALNGALTAVHAARLDIVGVLTLGMI
                     TALGGGIIRDVLIGSVPPAAFRDWRYLALAAGGGLVAFALSHWLDRLEIPIIVLDAVG
                     LSVFAVIGASKALAFGLDVGPAIILGIITGVGGGTIRDTLVRQIPSVLHSELYAIPAL
                     IGAAVTVATIRAGVYGVTAALAAAAVCFVIRMLGVRFSINAPAPPGTKDT"
     gene            1333..1581
                     /locus_tag="VF788_13945"
     CDS             1333..1581
                     /locus_tag="VF788_13945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935261.1"
                     /translation="MDVSVGDLYAAGRDPALGGLDPLMVAAELGEREKPWEVRSVRDS
                     RAFGAALGRWGLDGAMSDAALSPSPTVYQLRVVLAGAL"
     gene            complement(2937..3197)
                     /locus_tag="VF788_13950"
     CDS             complement(2937..3197)
                     /locus_tag="VF788_13950"
                     /inference="COORDINATES: protein motif:HMM:NF021520.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2249 domain-containing protein"
                     /protein_id="HEX8935262.1"
                     /translation="MKQQLYASVSTRGTAVPDQELDVRALRESDKHPAILHTYDALSV
                     GESFVLVYNHDPKPLHEEFDTDHPGSYGWEYFDNGQTRGGSE"
     gene            complement(3334..4638)
                     /locus_tag="VF788_13955"
     CDS             complement(3334..4638)
                     /locus_tag="VF788_13955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEX8935263.1"
                     /translation="MSSTAAPAEVTGGAGGAILAVLQRVGRSLMMPIVVLPPAALLLR
                     LGQPDLLGRSKLGWLDAIADVISASGQAIFDALPLLFAVGVAIGFARRSDGSTALAAL
                     VGYLVFDRVTRVIFASAPAGWPQPFQTLKKAVVVDNDGTQTLNLAQANPTGVLGGILM
                     GLLAAVLWQRYHRVKLPTWLAFFGGRRFVPIATAFAALITAVAVALLWFLAGAGIDWV
                     GDQLVSAGALGVGVYGVVNRLLIPLGLHHIVNSIVWFTVPDCSDATRTTLGGDLNCYF
                     AGVHGTGGFMAGFFPVIMFGLPAAALAMVHEAKAPRRREVASIMLAAGLTSLITGVTE
                     PIEFSFVFVAPALFAVHAALTGLSMALAYILNIKIGFGFSAGLLDYVLNFNKANTENP
                     LLIIVLGIIYAIAYYLLFRVLIRTLDLKTLGREPDEKSTSAT"
     gene            4776..>5374
                     /locus_tag="VF788_13960"
     CDS             4776..>5374
                     /locus_tag="VF788_13960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEX8935264.1"
                     /translation="MSVVVASRMVTGEEMLAPAGVVVEGGRVVNVVAGSQVGRLRADV
                     TLVDGLLVPGLLDLQVNGYFGIDFVSATPVEWSAVATRLPETGVTAFAPTFITGPLNR
                     LAAGLRRAEHAMVAARVTNSARIVGVHLEGPFLASSRRGSHNAAFLRDPTDQALEFLL
                     DAAAPGTLRLVTLAPERPGALDAVRRLTAAGVLVSLGHT"
BASE COUNT          934 a         1698 c         1809 g          933 t
ORIGIN      
        1 cctccgtcga tcctgtggta ctcgcggcga tgatcgtgct gcggctgcag acgatcgtct
       61 cccgcgagat cgcgcccgtc gaacccgtcg tgctcaccgt cggcagcatc cggtcgggga
      121 gtaagagcaa cgtcatcccc gatcgggccg agctgcagct gaacatccgc acctacagcg
      181 aacagacccg ccgctcaatg ctggatgcgg tacgccgcat cgtcactgcc gagtgccagg
      241 cgtcgggctg tctgaaggat ccggacttcg agctgttcga ccgcttcccg atcaccgaca
      301 acgacgctgc gaccaccgag cgggtggccg gcgcgttcgc cgagttcttc ggcgatcggg
      361 cccagccgat ggggcagcag accgcaagcg aggacctcag cgacatcccc accgcgctcg
      421 gcgtgcccta cacctactgg ggaatcggcg gcatcgaccc ggatgcctat cgcaccgccg
      481 ctgaggcggg ccgggtgtcc caggacatcc cggtcaacca ctccgccaat ttcgctccga
      541 tcattcaacc caccctcgac accggcaccc aggccctggt cgtggccgca ctggcctggc
      601 tcgcccagtg accgtgtccc tgccgcggac cgaggtcagg tgtctttcgt gcccggcggc
      661 gcgggcgcgt tgatgctgaa gcggacccca agcatccgga tgacgaagca gactgcggcc
      721 gctgccagcg cggccgtgac gccatagacg cccgcccgga tggtggccac cgtgaccgcg
      781 gcgccgatca gggcggggat cgcgtagagc tcgctgtgca gcaccgaggg gatctgccgc
      841 acgagggtgt cgcgtatcgt gccgccgccc accccggtga tgatgcccag gatgatcgcc
      901 ggtccgacgt cgagtccgaa ggcgagagcc ttgctcgccc cgatcaccgc gaagacgctc
      961 agcccgacgg cgtccagcac gatgatcggt atctcgaggc ggtccagcca gtggctcagg
     1021 gcgaatgcga cgagcccccc gccggcggcg agcgccaggt agcgccagtc gcggaaggcg
     1081 gccggcggta ccgagccgat gaggacgtcg cggatgatgc cgccgcccag ggcggtgatc
     1141 atgccgaggg tgaggacgcc gacgatgtcc aggcgggcgg catgcaccgc ggtcagcgcg
     1201 ccgttgagcg cgaacacgaa ggtgccagtc agatccagcg cgagcagcag cggcgactcg
     1261 gtcgtcatag cgggtgtcta cccctctggc cgcgcctctg ccagggcggc ccactcaccc
     1321 gcgacggtgg tggtggatgt gtccgtaggc gatctttacg ctgctggccg cgacccggcg
     1381 ctgggcggcc tggatccgct catggtcgcg gcggaacttg gagagcggga aaaaccgtgg
     1441 gaggtgaggt cggtcaggga cagtagggcc tttggggcgg cccttggccg gtggggcctg
     1501 gatggcgcga tgtctgatgc tgctctgtcc ccgagtccca ccgtgtatca gctgcgcgtc
     1561 gtgctggccg gggcgctatg aaggtcactg tgcgggtcgt tgtccaggcc ggcgacgata
     1621 ccggcgcccc gagcgtggtc cgcgaggtgc tgtctgtgga tcgagacgcc ctggcccccg
     1681 gcacgctggg tcttcagcgg ggtgaggcca tggatcttct gtctgctgtt cagggcgcgc
     1741 tggtcgacga gcatgccaag gccgccttga ctacccaggt ggcctgcccg gagtgtgggc
     1801 ggccccgacg gacaaggact cccgcacgat cgtggtgcgc agcctgttcg ggaccctgcg
     1861 gccggccagt ccgcggtagt ggcactgtga ctgccagccc caggccagct ggacgttcag
     1921 ccctctggcc gcggcaccat cgacgtagcc tcgatcaaga tctgactccg caaccccacc
     1981 aaacaagatc tatgagacac gctccagtcg taatagcctg atcgggacac ctccaatacc
     2041 cggcaggcca ccgcgacatc gatatcgtca tcggcgagtt cacagaccag cgggtagacc
     2101 agtttgggag cacgttctcc cgggcgaaat acgccgccgc ccgcttgagg atctccacct
     2161 caagttccag cctgcgttta tcctggcgga gctctgccag atcctttttc tcggcgctac
     2221 tcagctgtgt ctggctgcct ttgtcatcga cctcggcctg tgccagccaa ttccgcaggc
     2281 acgactcgct gatccccagc tccttcgcca gctcagcgat cggtttggac cccttcggtg
     2341 tgcatccgag atgagatgtc gtcggcgggt tagtactgca acgacagttc gtgacctcat
     2401 cgtcgatagt ggctggcgcg ggctcgtgct tggttggttc gtcgccagca tgaccagtgc
     2461 agggtgtgct ggatgggtgc ggcgaccgcc gtcacctgtt ccacgccgag gaataccagt
     2521 gcgagttggc caaccgcttc agtacctgga acgaagctac cgggctgacc accgcagcct
     2581 gaaacacccg agaggacccg actgtccctc ctcgtaaaca cgtactgaat gaactccacc
     2641 actcgtcaga ccgaacaagt tgacaatgcc cagacgagcg ctccgggctc tagatcggtg
     2701 gtgctgagct cagtagtgat ctggccagtt ccgtgagaat gagcagcagc acgtcgaggt
     2761 cgggtccgat atgcgcaccg atagaggcgc ccggttgcgg ccggatgaca ttggagtcta
     2821 ggtcgcgtcg gcgcattggc agtttccata cggcacccgt ggcgtcagga tggctctcac
     2881 ggatgacggt ggtcgtgttg cacaggatgc gggggagggg ggtggtggtg agcttgctat
     2941 tcggatccgc cacgtgtctg gccattgtcg aagtattccc agccgtagct gccggggtgg
     3001 tcggtgtcga actcctcgtg caagggtttg gggtcgtggt tgtaaaccag cacgaaagac
     3061 tcgccgacgg agagtgcgtc gtaggtgtgg agaattgccg ggtgcttgtc ggactcgcgc
     3121 agcgcgcgta catccagttc ctggtcgggc acggcggttc ctctcgtcga gactgatgca
     3181 tacagctgtt gtttcacgcc taacgctcga ctgcgcgcag gtttagtcga gcgagctaca
     3241 tcgagcggtc gtcgagcacg tgatggtcac tgcttacgag tccaaagacc cgccgagtca
     3301 ggcgggcgtg cgcatcatta tcgctaggac gcgtcatgtg gcggaggttg acttctcgtc
     3361 gggctctcgg cccagtgtct tgaggtcgag tgtgcggatg aggacacgga agagcaggta
     3421 gtaggcgatc gcgtagataa taccaaggac gattatgagc agtgggttct cggtgttggc
     3481 cttgttgaag ttcagcacgt agtcgaggag tcccgcggag aacccgaagc cgattttgat
     3541 attaaggata taggccagtg ccatcgaaag cccagtgagc gctgcgtgta cggcgaagag
     3601 cgctggagcc acgaagacga agctgaattc gattggttca gtcacgccgg taattagtga
     3661 cgtcagtcca gccgccaaca ttatgctggc cacctctctg cgtcgcgggg ctttcgcctc
     3721 gtgcaccatg gccagagccg cggcaggcag gccgaacatg atgaccggaa agaagccggc
     3781 catgaagccg ccggtgccat ggaccccggc gaagtaacag ttgagatcgc caccgagcgt
     3841 tgtcctcgtc gcgtcggagc agtccggcac tgtgaaccac acgattgagt tcacgatgtg
     3901 gtgcaagccg agcggaatca gcaaccggtt cacgacaccg tagacgccga cgccgagagc
     3961 acccgcgctg acgagctgat caccgaccca gtcgatgccg gcgccagcga ggaaccagag
     4021 cagggcgacg gcgaccgcgg tgatcagcgc ggcgaacgcc gtggcgatcg gcacgaaccg
     4081 gcgaccgccg aagaatgcga gccaggtcgg cagcttcacc cggtggtagc gctgccagag
     4141 caccgcggcg agcaggccca tgaggatgcc gcccaggacg ccagtggggt tagcctgtgc
     4201 caggttaagg gtctgcgtac cgtcgttatc gacgaccact gcttttttga gcgtctggaa
     4261 aggctgcggc cagcccgccg gagccgaggc gaagatgacc cgggtcaccc gatcgaacac
     4321 gaggtagccg accagtgcgg ccaatgcagt ggagccgtca gatcgccggg cgaacccgat
     4381 cgccacgccg actgcgaaca acaacggtag ggcgtcgaag atggcctgac cactcgccga
     4441 gatgacgtcc gcaatcgcgt ccagccagcc gagcttgctg cgaccgagca ggtcgggttg
     4501 gcccagccga agcagcagcg cggccggcgg gagcaccacg atgggcatca tgaggctccg
     4561 gccgacgcgc tggagcacgg cgaggatggc gcctccggcg cctcctgtca cctcggcagg
     4621 cgcggcggtc gagctcatga gcgaacctcc tccgtcaaag gaaatcgccg cgtcgacgta
     4681 gactccgcgt cgatgaggtt ggtcagacta gaccgaaacc ccttacccga tcgtcgatgc
     4741 attcgaagag gtcaatgcat tcggagagat tgccggtgag tgtggtcgtc gcgtcgcgaa
     4801 tggttactgg cgaggagatg ctcgccccgg ctggggtggt ggtcgagggc ggtcgcgtcg
     4861 tcaacgtggt ggccggctcg caggtcggca ggttgcgcgc cgacgtgacc ttggtggacg
     4921 ggttacttgt gcccggtctg ctcgacctcc aggtcaacgg ttactttgga atcgacttcg
     4981 tctcggccac accggtcgaa tggtcagcgg tggcgacccg gcttcccgag accggcgtga
     5041 cagcgttcgc tcccactttc atcacgggtc ccctcaaccg tctcgccgcc gggctgcgca
     5101 gggccgaaca cgccatggtt gccgcgcggg tgacaaactc ggcccggatt gtcggagtac
     5161 acctcgaagg gccgttcctg gccagctcac gccgcggttc gcacaatgcg gccttcctcc
     5221 gtgacccgac cgaccaggcg ctcgagttct tgttggatgc cgccgcgcca ggcacgctgc
     5281 ggctggtgac cctggccccg gagcgccccg gtgccctgga tgcggtgcgt cggctgaccg
     5341 ccgcaggtgt gttggtcagt ctgggccata ctga
//
LOCUS       DASVXZ010000662         2579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_701250, whole genome shotgun sequence.
ACCESSION   DASVXZ010000662 DASVXZ010000000
VERSION     DASVXZ010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_701250"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..1062)
                     /locus_tag="VF788_13965"
     CDS             complement(124..1062)
                     /locus_tag="VF788_13965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007031176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF389 domain-containing protein"
                     /protein_id="HEX8935265.1"
                     /translation="MLHLRITCPAEATDAVLNALRSNSGAVHLTVLRGAAVEPPGDLV
                     QADVVREAADGLLSDLRALGVDHAGGITLASLDTVLSDAADAAAVAVPGDPADAVVWD
                     ELIASTGGDSQLTFTYLAFLTLACLIAVVGVVTDSPITVVGAMVVGPEFAPLAALAVG
                     LVLRRGDLIRRAALALGVGFPLAMLVAAGGVLLGEWTGLIDVGVVGSLKQVDFIYRVG
                     PFSLILALLAGAAGMLSLTSARSAALIGVFISVTTVPAAAFAVVGVTTGAWRTAAESA
                     LQLLVNLVGIALAGVLVLGLRTRRDARNLQRPLIPG"
     gene            complement(1065..>2579)
                     /gene="aspS"
                     /locus_tag="VF788_13970"
     CDS             complement(1065..>2579)
                     /gene="aspS"
                     /locus_tag="VF788_13970"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEX8935266.1"
                     /translation="IPTGGIELIAEELAVLGESAPLPFPLDDHLEVGEEVRLRYRYLD
                     LRRASQAAALRLRSEANRIARTVLHAERFVEVETPTLTRSTPEGARDFLVPARLQPGC
                     WYALPQSPQLFKQLLMVAGMERYYQIARCYRDEDFRADRQPEFTQLDIEMSFAQQDDV
                     MLLGEKVIAALWSELAGHQLELPIRRLSYLDAMARYGTDKPDLRFGLELTELTQYFLD
                     TSFRVFQAPYVGAVVMPGGTAQSRRQLDAWQEWAKQRGHKGLGYVLVGAEGELSGPVA
                     RNLAEHEREGLAKAVGANPGDCVFFAAGDPRDARALLGAARVEVGRRCGLIDESAWSF
                     VWVVDAPMFEPVEHSGDVAAGHSGWTAVHHPFTAPTPQWADRFEQDPGAALAYAYDLV
                     CNGNEIGGGSIRIHQPDVQQRVFRVLGISDEEAREKFGFLLEAFRYGAPPHGGIAFGW
                     DRICMLLTGADSLREVIAFPKSGGGFDPLTGAPAPITTEQRCEAGVDAKPVVKG"
BASE COUNT          509 a          893 c          793 g          384 t
ORIGIN      
        1 agagcggaga acgtttccac ggccacgcgc cgatgatcac ccgtcggggc tcactcccgg
       61 tgagcaactg atgacgtatc gaagacggct tagcgaacga tccgtgctcc ggcccggtcc
      121 ggctcatccc gggatcaatg gacgctggag gttgcgagcg tcacgtcgcg tgcgcaaccc
      181 caatacaagc acccccgcaa gagcgatgcc gaccagattc accagaagct gcagcgccga
      241 ctccgcggct gtccgccagg caccggtggt caccccgacc accgcgaacg cggccgcagg
      301 caccgtcgtc accgagatga acaccccgat gagggcggcc gagcgcgccg aggtgaggct
      361 gagcatccca gctgcaccgg ccagcagcgc aaggatcagc gagaacggtc ccactcggta
      421 tatgaaatct acttgcttga gtgaaccaac gactcccaca tcgatgagcc cggtccattc
      481 gcccagtaac acgccccctg ccgcaacgag catcgcgagc gggaaaccca cgcccaacgc
      541 cagcgccgcc ctgcggatga ggtccccgcg acgcagcacc agtcccacag ccagtgcagc
      601 cagcggagca aattctgggc cgacgaccat ggctccgacg accgtgatcg gggaatcggt
      661 aaccactccg accacggcga tgaggcatgc cagagtgaga aaggccaggt aggtgaaggt
      721 cagctgggag tcgcccccgg tactcgcgat gagctcatcc cacaccaccg cgtcggcagg
      781 atcccctggt acggccaccg cagctgcatc tgctgcatca gagagcacgg tatccagcga
      841 ggcgagagtg atcccaccag cgtggtcgac gccgagtgca cgaagatcag acagcagtcc
      901 atcggcagcc tcccgaacca catctgcctg caccaggtca ccaggcggct cgaccgcggc
      961 gcctcgcaat acagtcaggt gaaccgcccc agaattgctg cgcagcgcat tgagcaccgc
     1021 atctgtggct tccgctgggc aggtgatgcg cagatgcagc acccctatcc cttcacgaca
     1081 ggcttggcat ccactcccgc ttcgcagcgc tgctcagtcg taatcggggc cggagcaccg
     1141 gtaaggggat cgaaaccacc gccggatttg ggaaacgcga tgacttcgcg caaagaatcg
     1201 gcaccagtga gcaacatgca gatccggtcc cagccgaagg caatcccacc gtgcggcggc
     1261 gcaccgtacc taaacgcctc cagcaggaac ccgaacttct cccgcgcctc ctcgtcggag
     1321 attcccagca cccggaacac ccgctgctgc acatcgggct ggtggatacg gatcgagccg
     1381 ccaccgatct cgttgccgtt gcacaccagg tcataggcgt aggccaacgc ggcgcctgga
     1441 tcctgctcga accgatctgc ccactgcggg gtgggcgcgg taaacggatg atgcacggcg
     1501 gtccagccgc tgtgtccggc cgcgacatca ccgctgtgct cgactggttc aaacattggc
     1561 gcgtcgacca cccatacgaa cgaccacgcc gactcatcga tcagcccaca gcgccggccg
     1621 acctccaccc gggcggcgcc cagcaaggca cgcgcgtccc ggggatcgcc agccgcgaag
     1681 aacacgcagt ctccggggtt tgcgccaacc gccttggcta ggccttctcg ctcgtgttca
     1741 gcgaggttac gggcgaccgg gccggacaac tcgccttccg caccgaccag cacgtagccc
     1801 aggcccttgt ggccccgttg tttggcccat tcctgccagg cgtccagctg ccgacgcgac
     1861 tgggctgtcc caccaggcat gacgaccgcc cccacatagg gggcctggaa cacccggaat
     1921 gaggtgtcga ggaagtactg ggtgagctcg gtgagctcaa gcccgaaccg gaggtcaggc
     1981 ttatcggttc cgtagcgagc catcgcgtcg aggtagctca gccgacggat gggtaactcg
     2041 agctggtgcc cggccagctc cgaccacaat gcggcgatca ctttctcccc cagcagcatt
     2101 acgtcgtcct gctgggcgaa gctcatctcg atgtcgagct gggtgaactc gggctgccgg
     2161 tcggctcgga aatcttcatc ccggtagcag cgggcgatct ggtagtaccg ctccataccg
     2221 gcgaccatga gaagttgttt gaacagctgt ggagactgcg gcagcgcgta ccagcagccg
     2281 ggttgaagcc gcgccggcac caggaaatct cgcgctcctt ccggggtcga ccgagtcagg
     2341 gtgggagtct ccacctcgac gaagcgctcc gcgtgcagca cggtgcgagc gatccggttg
     2401 gcctcgctac gcaggcgtaa tgcggcggcc tggctggcac ggcggagatc gaggtagcgg
     2461 taccgcagcc ggacctcttc gccgacctcc aggtgatcgt caagaggaaa cggcaacggc
     2521 gccgactcgc cgagcaccgc cagctcctct gcgatgagct cgatgcctcc cgtggggat
//
LOCUS       DASVXZ010000663         5305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_164626, whole genome shotgun sequence.
ACCESSION   DASVXZ010000663 DASVXZ010000000
VERSION     DASVXZ010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5305
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164626"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            418..705
                     /locus_tag="VF788_13975"
     CDS             418..705
                     /locus_tag="VF788_13975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935267.1"
                     /translation="MDDEQEFPPESSEPPGDSGVRIRALNGWTLVVRTDLATRLVTLD
                     TEDAEGMLVGSRVLGTDDSQRLVDALHEALEKSRTSGGPVVLDVSRVIGRD"
     gene            769..1923
                     /locus_tag="VF788_13980"
     CDS             769..1923
                     /locus_tag="VF788_13980"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8935268.1"
                     /translation="MGFDALDLDVLRGRRTMKWARYPPDVLPAWVAEMDFPLPPAVLG
                     AAREVIDAQDLGYCEPAGLAEAFANWATQYQAWRPDPALACPVADVMAGVEAALRALT
                     EPGDGVVLLTPAYPPFFALLKQLGRAAVPWPLQDRPQGWSLDVQRLDDALRDGARAVL
                     LCHPHNPTGRVLTLGELAAIAEIVDARGGKVISDEVHAPLVDTGSSFTPYAASGPRAA
                     THCVTVTSISKGWNVPGLKCALLQAQPATAQVTASVPQYERLRASVPGVAASIAAWTD
                     DGGWLDELRVHLDRTRTELADWIRRTPGVQAHPGQAGYLAWLDLREANLGDDPAAVLL
                     ERGRLAVSPGHAFALPAEQGNGRIRLNHGTSLSLLREALRRIVLTIEGSS"
     gene            complement(1861..2238)
                     /locus_tag="VF788_13985"
     CDS             complement(1861..2238)
                     /locus_tag="VF788_13985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935269.1"
                     /translation="MGLSIGMVTIDCSDPQSLGKFWTAALGTTVAGDYGEFVLLDGTP
                     ALGLQKVPEPRTGKDRIHVDLRADDRATEVARLTGLGALVLADPGGQPVLRRQPPQIA
                     RWPSRGALDRENDAAQRLAQQGQ"
     gene            2330..4078
                     /locus_tag="VF788_13990"
     CDS             2330..4078
                     /locus_tag="VF788_13990"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEX8935270.1"
                     /translation="MITRLSTLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGIYSW
                     LPLGLRVLRNIEAVVRQEMDAIGGQEILFPALLPREPYQTTGRWTEYGPNLFRLRDRK
                     GADYLLGPTHEELFTLIVKGEFSSYKDYPVILYQVQTKYRDEERPRAGILRGREFLMK
                     DSYSFDLSEDGLARSYQLHRDAYIKIFDRLGLRYVIVSAMSGAMGGSASEEFLAEAET
                     GEDTFVRSTESGYAANVEAVITPAPPERPVDGLPPARVLHTPGTPTIDTLVDHLNRAG
                     LDRAFTAADTLKNVMIKFRQPGAQDWEPLGVGVPGDREVDMKRLEASLAPAEVALLDD
                     ADFAAYPFLAKGYIGPGALAEHGLRYLVDPRVVRGTAWVTGADRPDHHVVDLVCGRDF
                     TPDGVIEAAEVRAGDLSPDGAGTLVAARGIEIGHIFQLGRKYADAFALDALGPDGKPI
                     RITMGCYGIGVSRLVGAIAEQSHDRHGLVWPREVAPADVHVVLAGKDDTIRATGERLA
                     AELDLSGLRVILDDRPATPGVKFADAELIGVPTILVVGRGLSTGVVEIKDRATGERTE
                     VPVDGAVAHLQELCRK"
     gene            complement(4084..4494)
                     /locus_tag="VF788_13995"
     CDS             complement(4084..4494)
                     /locus_tag="VF788_13995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEX8935271.1"
                     /translation="MHTEQIRIQTGSQERVHDITEQCRAFLDRVEAGDGLLHAWVPHA
                     TAGLAVIETGSGSDTDLLAALRELLPMDDRWHHRHGFPGHGRDHLLPALLPPYASVPV
                     LDGRLMLGTWQSICLVDTNIDNPVRTVRLSFLTG"
     gene            complement(4521..4949)
                     /locus_tag="VF788_14000"
     CDS             complement(4521..4949)
                     /locus_tag="VF788_14000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX8935272.1"
                     /translation="MPVEALQGALAAEHAAIWVYGVAGAFVPNGLSSRLDEAATEHQA
                     RRDATERVLIGAGVHPVPPEPGYLTPEPVTDAASALRLLIIAENDAAAAWRSVVERSP
                     ADPNLRESALEALIAAAVRATRWRATAGTTPVTVPFPGAR"
BASE COUNT          834 a         1768 c         1827 g          876 t
ORIGIN      
        1 ctcggatgga gtgggctcag ccgagcgtcg ccgtagcggg cccacgtcgt cgacctcatc
       61 gtcgaagcgg cgccggtggt ggcgttcggg gatgtcgtca aagcggctgc gccgcacggg
      121 cagccgatcg tgctgcggca cgggaggatc tcctcaggag ttgcgctccc cggaatcagc
      181 cggaagcgcg ggggaaggga aggtcagaat tcgctgcaca ccacagacag ccacgtccgg
      241 ccacctcctc caccgctcaa ctccattggg tccaactccg ctgggcccgc gagatcgacg
      301 gctgcgtacc gcgatcaggt gcagcatgtc cgcaacgtga tttgcaggca atcgattttc
      361 tgacctgctg gtgcccctgg tagggattcg accacggcag tgagcgagga tgggtgcgtg
      421 gacgatgagc aggagtttcc tcccgagtcg agtgaacccc caggtgactc cggcgtccgg
      481 attcgcgcct tgaacggatg gacgctcgtc gtgcgcaccg atctggccac tcggctggtc
      541 actctcgaca ccgaagacgc cgagggaatg ctggtcggga gtcgtgtcct cggtaccgat
      601 gacagccagc ggctcgtcga tgctctgcat gaggcattgg aaaagagccg gacatccggc
      661 ggaccggtgg tgctcgacgt ctcacgggtg atcgggcgcg actgagctgg tgccagggtt
      721 ttcgctgtgc actggcgcgc acccggtgga cccaggtagg cactgctggt gggattcgac
      781 gcactggacc ttgatgtgct ccgcggccgc cggacgatga agtgggcccg ataccctccc
      841 gacgtgctgc ccgcctgggt cgcggagatg gatttcccgc tgccccccgc ggtgctcggc
      901 gcagcccgcg aggtgatcga cgcgcaggat ctgggctact gcgaaccggc cgggcttgcc
      961 gaggcgttcg ccaactgggc gacgcagtat caggcttggc gacccgatcc cgcgctggcc
     1021 tgcccggtcg ctgatgtgat ggcaggggtg gaggcagccc ttcgggcgct aactgagccg
     1081 ggtgatggcg tggtactgct cacccctgcg tatccgccgt tcttcgctct tctcaaacaa
     1141 ctgggtcgag cagcggtgcc gtggccgcta caggacaggc cgcagggctg gagcctcgat
     1201 gtgcagcggt tggacgatgc gctgcgtgat ggggcccgcg cggtgctgct gtgccaccca
     1261 cacaacccca ccggccgggt gctcacactc ggggagcttg ccgctatcgc ggagatcgtc
     1321 gacgcgcgag gcggcaaggt gatctccgat gaggtgcacg ccccgctggt ggacaccggc
     1381 agcagcttca ctccctacgc cgcaagtggg ccccgcgccg cgacccactg tgtcaccgtc
     1441 accagcatct cgaagggttg gaacgtacct gggctcaagt gcgcgttact gcaggcacag
     1501 ccggctaccg cgcaggtcac cgcctcggtg ccgcagtacg agcggctgcg cgcctcggta
     1561 cccggggtgg ccgcctccat cgcagcctgg accgatgatg gcggttggct cgacgagctg
     1621 cgcgtccacc tggatcggac ccgcaccgaa cttgccgatt ggatccggcg taccccgggc
     1681 gtgcaggcgc atcccggcca ggccggctac ctcgcctggc tcgatctgcg ggaagcgaac
     1741 ctaggcgacg acccggccgc ggtgttgcta gagcgggggc gcctcgcggt gagcccggga
     1801 catgcctttg cgctgcccgc cgagcagggc aacgggcgga tccggctcaa ccacggcacc
     1861 tcattgtccc tgctgcgcga ggcgctgcgc cgcatcgttc tcacgatcga gggctcctcg
     1921 tgacggccac cgggctatct gtggtggctg ccgacgcaga actggttgcc cccccggatc
     1981 ggccagtact aacgctccca gcccggtgag ccgggccacc tccgtcgccc ggtcatcagc
     2041 acgtagatcc acatggatgc ggtccttgcc ggttcgtggt tcgggcacct tctggaggcc
     2101 cagcgccggc gtcccgtcca gcagcacgaa ctcgccgtag tcgccggcca ctgtggtacc
     2161 caaagctgcg gtccagaact tgcccagcga ctgcggatcc gagcagtcga tggtcaccat
     2221 gccgattgac agacccatac tgtggacggt aaccggcagg accgacttct cttccggcca
     2281 gatacgctgc cagcttcgca atccggcctt tccgaggagt gccctaagca tgatcaccag
     2341 gttgtcgacg ctgttcctgc gtaccctgcg cgaggatccc gcagacgccg aggtgcccag
     2401 ccacaggctg ctggtccgcg ccggttatgt ccgccgcgtc gcccccggga tctactcctg
     2461 gctgccgctg ggtctgcgag tcctgcgcaa catcgaggcg gtggtgcgcc aggaaatgga
     2521 cgcgatcggt gggcaggaga tcctgttccc cgcattgttg ccccgggagc cctaccagac
     2581 caccggccgc tggaccgagt acggcccgaa cctgttccgg ctacgcgacc gtaagggggc
     2641 cgactacctg ctcggcccca cccacgagga actgttcacc ctcatcgtca agggcgagtt
     2701 cagctcctac aaggactacc cggtgatcct ctaccaggtg cagaccaaat accgcgacga
     2761 ggagcgcccc cgcgctggga ttctgcgtgg ccgggagttc ctgatgaagg actcgtactc
     2821 cttcgatctg tcggaggacg ggctggcgcg ttcctaccag ctgcaccggg atgcttatat
     2881 caagatcttc gaccggctcg ggctgcgcta cgtgatcgtg tcggcgatgt ccggtgcgat
     2941 gggcggctcg gccagcgagg agttccttgc cgaagccgag accggcgagg acactttcgt
     3001 gcgcagcacc gagtccggat acgcagccaa cgtggaggcg gtgattactc cggcgccgcc
     3061 agagcggccc gtggacggtc tgccgccggc tcgggtgttg cataccccgg gcacgcctac
     3121 gatcgacacg ctggtcgacc acctcaacag ggcaggtctg gaccgtgcct tcaccgccgc
     3181 ggataccctc aagaacgtca tgatcaagtt tcgtcaaccc ggcgcgcagg actgggaacc
     3241 gctgggtgtc ggggttcccg gcgaccgtga ggtcgacatg aaacggctgg aggcctcgct
     3301 ggcgccggcc gaggtagcac tgctcgacga cgcggacttc gccgcatacc cgttcctggc
     3361 taagggctat atcgggccgg gagcgctcgc ggagcatgga ctgcgctatc tcgtcgatcc
     3421 ccgggtggtt cggggaactg cctgggtcac cggcgccgac cgccccgacc accacgtcgt
     3481 cgacctcgtg tgtggacgtg acttcacccc ggatggtgtc atcgaggcag ccgaggtgcg
     3541 tgccggcgat ctctcaccgg atggggccgg caccctggtc gctgcccgcg gcatcgagat
     3601 cgggcacatc ttccagctcg gccgcaagta cgctgacgcg ttcgcgttgg acgcgctggg
     3661 acccgacggc aagccgatcc ggatcaccat gggttgctac gggatcgggg tctcccgcct
     3721 ggtcggggcc atcgccgagc agagccacga ccggcacggg ctggtctggc cccgcgaggt
     3781 cgcgccggcc gacgtgcacg tcgtcctggc cggcaaggac gacacgatcc gcgccactgg
     3841 cgaacggctg gccgccgaac tcgacttgtc cggtctgcgg gtgatcctcg atgatcgtcc
     3901 ggccaccccg ggagtgaagt tcgccgatgc cgaactgatc ggcgtgccga ccatcctcgt
     3961 ggtgggacgg ggcctgtcca ccggagttgt ggagatcaag gaccgggcca ccggggagcg
     4021 cactgaggtg ccggtggacg gcgctgtcgc acacctgcag gagttgtgtc gcaagtaggc
     4081 agatcagccg gtcaggaagc tcaaccggac ggtgcggacc gggttgtcga tgttggtgtc
     4141 caccaggcag atcgactgcc aggtgcccaa catgagccgc ccgtcgagca ccgggacgct
     4201 ggcgtaggga ggcagcagcg caggaagcag gtggtccctg ccatgtcccg ggaagccgtg
     4261 tcgatggtgc caccggtcgt ccataggcag cagctcgcgc agcgcggcga gcaggtccgt
     4321 gtcgctgcct gacccggttt cgatcaccgc gaggcccgcc gtcgcatgcg gcacccacgc
     4381 atgcagcagg ccatcacccg cctcgacgcg gtcgagaaag gcacggcact gctcggtgat
     4441 gtcgtgtacc cgttcctgcg agccagtctg gatgcgaatc tgctcggtgt gcacggtcgt
     4501 acggtaattg ctggctgtcc ttaccgcgcc ccgggaaagg gcactgtcac cggggtcgtt
     4561 ccggcggttg cccgccatcg ggtggcccgc acggctgccg cgatcagcgc ctcgagcgcg
     4621 gactcgcgca ggttgggatc ggccgggctg cgttctacaa ccgagcgcca ggccgctgct
     4681 gcgtcattct ctgcgatgat cagcagccgg agcgctgagg cggcgtcggt gaccggttct
     4741 ggtgtgaggt atcccggttc gggcggcaca gggtgcactc ccgcgccgat cagcacccgt
     4801 tcggtggcgt cccgacgagc ctgatgctcg gtcgcggcct cgtcgagtcg actggacaac
     4861 ccattgggca cgaatgcccc tgcgaccccg taaacccaaa tcgcggcatg ctcagccgcc
     4921 aacgcaccct gcagcgcctc caccggcacg ctacttccgt cccgatatgg agacatatcg
     4981 ggcctggaag gcacccaatt accccgatat gtccccatgt cggggtacgg gcggcggggg
     5041 agcagcgggc tcatgagagg agggcggcgt gggttgcgca gcacgccgct atggatgcga
     5101 gaagggcggc gcggtagccg ggcaacgtca acacgagtgc agccgcctcg tcctgagccg
     5161 cgtgcatcac ccgggtgagc gccgaccgcg tgccagccag gtcaggattg gcaggtgacg
     5221 gaggcggccc gccaggcggg ggggtcgccg agggggatac ggcaacgctg ggcgccgtcc
     5281 tgggccggac ccgccgtagc tcggc
//
LOCUS       DASVXZ010000664         6880 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1598412, whole genome shotgun sequence.
ACCESSION   DASVXZ010000664 DASVXZ010000000
VERSION     DASVXZ010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6880
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1598412"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VF788_14005"
     CDS             complement(<1..485)
                     /locus_tag="VF788_14005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005448469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3159 domain-containing protein"
                     /protein_id="HEX8935273.1"
                     /translation="MSRPDPAEPLTALLGGRRTALDATVPAVAFVLGWLMSGHSLGWG
                     AAAALLTGAVVASLRWYRGDRPLAALLGLLGVSLAALIALYTGRAADFFLAQLLSNVV
                     SALVWALSVLIRWPLLGVIVGGALGQRTAWRRDPALLRAYCLASWVWVGQYLIRIAVF
                     TP"
     gene            complement(455..1000)
                     /locus_tag="VF788_14010"
     CDS             complement(455..1000)
                     /locus_tag="VF788_14010"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX8935274.1"
                     /translation="MTPDLIDDPRLTAMGLLIEAHQGLMTRLDPVHAAHGLSGSDFDT
                     LIRLARSPGRRLRMTDLAAQTSMSTSGITRIVDRLERAGLICRTRCSADRRSCFAVLA
                     DVGAQRLAADAPDIVAAIERWFTGLLTSEQHDAFIAALHIVRDAVHPDATAGALSAHC
                     QRLPGWSGTLDACRARIPLSR"
     gene            1242..2174
                     /locus_tag="VF788_14015"
     CDS             1242..2174
                     /locus_tag="VF788_14015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005153098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP desaturase"
                     /protein_id="HEX8935275.1"
                     /translation="MTTISDTVRLLHDLEPVVTENLDRHLAAAKEWMPHEYVPWSLGR
                     DYADLGGEPWDPEQSRLSPIARTALEVNLLTEDNLPSYHREIERAFGREGAWGTWVHR
                     WTAEEGRHAYCIRDYLLVTRGVDPVELERARMQVMQTGYDTQEAPLLRVLAYVAFQEL
                     ATRISHRNTGRHAGDPIAERLLTRVSTDENLHMVFYRNLVKAALCHSPGPTVRAITDE
                     VAGFNMPGIVIPGFARKAAQIARAGIYDLRIHHDEVIWPLLRQWGVFDLEGLDSEGEK
                     ARAELADFLTQLDGQASRFEERRAAALDRASARS"
     gene            complement(2179..2928)
                     /locus_tag="VF788_14020"
     CDS             complement(2179..2928)
                     /locus_tag="VF788_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005149604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX8935276.1"
                     /translation="MTDGPYRCVARVATGLFRALDLRIDVVGGEHVPATGGGVVVINH
                     TGFLDFALAGLPFWREQGRFVRFMAKQEVFTHRVMGPAMRAMHHIPVDRAAGAGSFRA
                     AVEALRAGELVGIFPEATISRSFCLKEFKSGATRMARLAGVPLIPVTLWGSQRVWTKD
                     RKPTIRAARHIPISITIGAPLPAGRGPAADVELVKVMDGLLAETRARYPEAPDNDPWR
                     VPAHLGGTAPTPERAAELDAREQLERSQRSR"
     gene            3176..5074
                     /locus_tag="VF788_14025"
     CDS             3176..5074
                     /locus_tag="VF788_14025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935277.1"
                     /translation="MSFWRRVVLAVVCAYTIAALRLVAIPSVAAASLGSQAAEPDLGA
                     ILLDGRDVPPDFELDAKQSGSYEKPPIAPSWLSGIMEHAAHLRGYDRVWLNRQEHRAI
                     IAQVVEYPIEKLASADANSAAQDFKSTAVMEFPITAVPYARGFVVGHGKDVAVQGIFI
                     HGTRAFSIAVLIRTKASGADIELTRRLVEIQAAKAPPGSTELRDIGKPSLAAGTALGT
                     LGAAVAYVGSLSLVAWLRDPLRRHPTRPTPRQTALPNTTTVDVSPRARRRRRRAVAGL
                     LLELSGAGVTVAGLLPFTWPLGLLLVALGVGMAWIPRLVTATAHHAGSGSELWTGQHR
                     FRVACYTALSTVWVLTGLLTMVLYGVGAVLTSPGYDYNVRIVFVGAALLAAATLLRRR
                     ARRLAALDADELLRRDSRPMVLYLRTFADDSLTIRAATYARRSFIDRLSPRRFERFEE
                     VLVRNLTMIGPVIALNPPGTDLAPLGAARETLAADRWQPTIAGWMADAQLIVVGAAPE
                     AMTPGFGWELREIDSQGLWSKTLLVLPPVPDVTVQTRWELFTTVFTDTTMARHPIPAD
                     PARTLVLVGSLTAGWSAVTADQRTEWTYAEALMAATTMATTLMPYFAGSKRGAPSRPP
                     RRSRRGMR"
     gene            complement(4998..5447)
                     /locus_tag="VF788_14030"
     CDS             complement(4998..5447)
                     /locus_tag="VF788_14030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935278.1"
                     /translation="MTRRESVQLLALLASFVVVGYAGIRLLSGNPVGVGTWFVGSAAG
                     HDLLLFPLYAGLDAALVVLLRRRPALATVGGVRWLNYLRVPAVVSGVLLLVWLPLILG
                     LPTVIQDASGLPPPPLLRHWLAVTAFLFAISGAVLTVRLASTRRSTA"
     gene            complement(5444..6751)
                     /locus_tag="VF788_14035"
     CDS             complement(5444..6751)
                     /locus_tag="VF788_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010692447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8935279.1"
                     /translation="MLDRWVRRATEHPPPGPFRAGFWRSPLRGPWFTAVLSVVLLAGI
                     TLMFLTGLASYAAYNPNLAPGNDTTPDKGLLGSWLPGWPAGPSWLYWVTQGVHVTLGL
                     VLIPIVLAKLWSVLPKLFEWPPARSLTHLVERASLLLLVGGAVFELVTGVMNIQYFYA
                     WPFGFYQAHYYGAWVFIAAFLVHVAFRLRRMVTALRSRSLRNELRTPLEQTTAEPPDP
                     DHLVSPDPAPATISRRGALGMVAASSLVLLGLSVGQTIGGAARSTALLAPRGRDLGSS
                     APEQPDFQVNKTAAGAGIAPVDDTWRLELKGDTSRSLSRVQLLALPQHTARLPIACVE
                     GWSTGVQTWTGVRLVDLAALAGAAPGARLFVESLQRGGGFGSATLSAGQAGAADALLA
                     LQVNGADLTLDHGFPARVVVPALPGVHNTKWVTRMTFLAGSAP"
BASE COUNT         1263 a         2361 c         2223 g         1033 t
ORIGIN      
        1 ggagtgaata ctgcgatccg gatcaggtac tgccccaccc atacccagga cgccaggcag
       61 tacgcccgga gcagggccgg gtcgcgccgc caggcggtgc gctgacccag cgccccaccc
      121 acgatcacgc cgagcagtgg ccagcggatc agcacactga gcgcccacac caatgcgctg
      181 acgacgttgg acagcagttg tgcaaggaag aagtcggcgg cacggccggt atacagcgcg
      241 atcagtgccg ccagcgaaac cccgagcagg cccagcaacg cggcgagcgg gcggtcgccg
      301 cggtaccagc gcagcgaggc caccacggcc cccgtgagca gcgctgcggc agcaccccag
      361 cccagcgaat gacccgacat caaccagccc agcacgaagg cgaccgcggg cacggtggcg
      421 tccagggccg tccggcggcc accgagcagt gccgtcagcg gctcagcggg atccgggcgc
      481 gacacgcgtc cagggtgccc gaccaccccg gtaaccgctg acagtgggcg gacaacgctc
      541 cggccgtcgc gtcggggtgg accgcatccc gcacgatgtg cagcgcggca atgaaagcgt
      601 cgtgctgctc agaggtcaac agaccggtga accagcgctc gatggcagcc actatgtccg
      661 gcgcatcggc ggcgagccgc tgagcgccga cgtcggcgag gaccgcaaaa cagctgcggc
      721 gatccgctga gcaccgggta cggcagatca gtccggcacg ttccagccga tctacgatcc
      781 gggtgattcc gctggtcgac atcgacgtct gggcagcgag atcggtcatc cgcagtcgcc
      841 gcccgggcga gcgggccagc cggataagtg tgtcgaagtc gctaccggac agcccatgtg
      901 cggcatgcac cgggtccagg cgggtcatta gcccctgatg agcctcgatc aacaggccca
      961 ttgcggtcag ccgtgggtca tcaatcaggt ccggcgtcat gatccgactg tacccaagta
     1021 cttgatcaga ggaagatctt catgacaact taaaattgaa cgcgcacgct tacgccctgt
     1081 cgccgatgac gatttgggtg ttgtcgacgg tgtagtccag ttattgacgg cagccgaacg
     1141 accacggcgt ggcggggcag cagggacggg atcctgcgag gcacctcacg cgttacggtg
     1201 acgtaggcag gcctaactcc gaccacccgc tggggacctc gatgacgacg atctcggaca
     1261 ccgtccggct gctgcacgac ctcgagccgg tggtcaccga gaacctcgac cggcacctgg
     1321 ctgccgccaa ggagtggatg ccacacgagt acgtcccgtg gagtctgggc cgtgactacg
     1381 ccgacctcgg cggtgagccc tgggatcccg agcagtccag gctctcgccg atcgcccgga
     1441 ccgcgctgga ggtcaacctt ctcaccgagg acaacctgcc cagctatcac cgggagatcg
     1501 agcgcgcgtt cggacgtgag ggtgcctggg gcacctgggt gcaccgctgg accgccgagg
     1561 agggccggca cgcgtactgc atccgcgact acctgctggt gacccggggg gtcgatccag
     1621 tggagctgga acgggctcgc atgcaggtca tgcagactgg ctacgacact caggaggcgc
     1681 cgctactgcg ggtcctggcc tatgtcgcct tccaggaact tgccacccgg atctcgcatc
     1741 gcaacaccgg ccgccacgcc ggagatccca tcgcggaacg gctcctgacc cgagtttcca
     1801 ccgacgagaa cctgcacatg gttttctacc gtaacctggt caaggccgcc ctgtgccact
     1861 cccccggccc caccgtccgg gcaatcaccg acgaggtagc cggcttcaac atgccgggca
     1921 tcgtcatccc cggcttcgcc cgcaaggccg cgcagatcgc tcgagccggc atctacgacc
     1981 tacgcatcca ccatgacgag gtgatctggc cgctgctgcg ccaatgggga gtcttcgacc
     2041 tcgagggcct ggactccgaa ggtgagaagg ctcgagctga gctggccgat ttcctgaccc
     2101 agctcgacgg gcaggccagc cggttcgagg aacggcgcgc tgcggctctc gaccgcgcct
     2161 cagcgcggtc atgaccagtc agcgcgagcg ctgactgcgc tccaactgtt cacgcgcgtc
     2221 cagctcagcg gcccgttctg gcgtcggcgc ggtgcctccc agatgcgccg gcaccctcca
     2281 ggggtcattg tcgggggctt ccgggtagcg tgcgcgggtt tcggcaagca gcccgtccat
     2341 caccttgacc agttcgacgt cggctgctgg gccacgcccg gccggcaagg gcgccccgat
     2401 ggtgatgctg atcgggatat ggcgcgcggc gcggatcgtg ggtttacggt ccttggtcca
     2461 cacccgctgg ctgccccaca gcgtcacggg gatcagcgga acaccggcca gccgcgccat
     2521 ccgggtggcg ccagacttga actccttcag gcaaaagctg cgactgatcg tcgcctctgg
     2581 gaatatcccc accaactcgc cggcgcgcaa cgcctcgacg gcagcacgga acgagcccgc
     2641 ccccgcggct cgatcgaccg ggatgtggtg catggcgcgc atcgccggcc ccatcactcg
     2701 atgggtgaac acctcctgct tggccatgaa acgcacgaac cgtccctgct cacgccaaaa
     2761 cggcaggcca gctagggcga aatcgaggaa accggtgtgg ttgatcacca ccacaccgcc
     2821 acctgtagct gggacgtgct ccccgcccac gacgtcgatc cggagatcca gcgcccgaaa
     2881 caggcccgtt gcgacacggg caacacagcg gtaaggccca tcggtcaccg gctcacgtta
     2941 ccgggagcgg tcagggtcac ctgagacgcc atccgactag ccagtgcgaa ggccgcagcg
     3001 cggccgttat tcatttaagt caacgcagga ccgtttggat tatctgctga ttctcattta
     3061 ccactaatcc gcgggctcga gggtcctgct gtccccagca ggaggatgtg aagcgctgac
     3121 ctacaatttc tcgcgtacct gtcatcggcg cacatctgac atcaggggag ccatcgtgag
     3181 cttctggcga cgtgttgtgc tagccgttgt ctgtgcgtac accattgcag ccctccggct
     3241 cgttgcaata ccgtccgtcg ctgcggcgtc actgggcagc caagccgctg agccagacct
     3301 cggtgcgatc ttgctcgacg gccgcgatgt gccaccagac ttcgaactgg atgcgaagca
     3361 gtccggatct tacgaaaaac ccccgatcgc acccagctgg ctgtccggga ttatggagca
     3421 cgccgcccat ctacgtggtt acgaccgagt ttggctcaat cggcaggaac accgagcaat
     3481 cattgcccag gtcgtcgagt accccatcga gaaactagcc agtgccgatg ccaattccgc
     3541 tgcgcaggac ttcaagagta cagcggtgat ggaattcccc attaccgctg tgccctacgc
     3601 gcgcggcttc gtcgtcgggc acggcaaaga cgtcgctgtc cagggaatct tcattcacgg
     3661 tacccgcgcc ttcagcatcg cggtgctgat tcgaaccaaa gcgtcaggag ccgacataga
     3721 gcttacccgc cgactcgtgg agatccaggc ggccaaggcg ccgcccggat ccacggaact
     3781 ccgagacatt ggcaaaccat cacttgcagc agggaccgcg ctcgggacac tgggtgcagc
     3841 tgtggcctac gtcgggagcc tgtcactcgt cgcatggctt cgcgatccgc tacgacggca
     3901 cccgaccaga ccgacgcccc ggcagacggc gctgccaaac accaccacgg ttgacgtttc
     3961 gccacgagcc cgacggcgtc gtcggcgcgc tgtggctggg ctgctgctcg aactcagcgg
     4021 cgccggagtg acggtagccg ggctcctacc gttcacctgg ccgctcggat tgctcctcgt
     4081 cgcgctcggt gtcggcatgg catggatacc ccgactcgtc acagcaacgg ctcaccatgc
     4141 aggatccgga tcggagctat ggacgggtca gcatcgattc cgagtggcct gctacacggc
     4201 tctctcaacc gtttgggtgc tcaccggcct gctcaccatg gtgctgtacg gcgtcggagc
     4261 agtcctgacg tcccccggct acgactacaa cgttcgcatc gtgttcgtcg gcgctgccct
     4321 cttggcagcc gccactctct tacgccgtcg cgcacgccgg ctggctgctc tcgacgcgga
     4381 cgagctgcta cgacgcgatt cgcggccgat ggtgttgtac ctccggacgt tcgctgatga
     4441 ctcgctgacc atccgtgcgg ccacctacgc gcgccggtcc ttcatcgacc ggctcagccc
     4501 gcgccggttc gagcgcttcg aggaggtact ggtccggaac ctcaccatga tcgggcctgt
     4561 catcgccctc aacccaccgg gcaccgacct cgcaccgctc ggggccgcgc gggagacgct
     4621 ggctgccgat cgctggcagc cgacgatcgc cggctggatg gccgacgcac agctcattgt
     4681 tgttggcgcc gcacccgagg ccatgacacc aggttttgga tgggagcttc gcgagatcga
     4741 ctctcaaggg ctgtggtcga agacactgct tgttctaccg ccggtacccg acgtcacggt
     4801 gcagacacga tgggaactgt tcacaacggt gttcaccgac acaactatgg cgcgccaccc
     4861 cattcccgca gacccggcgc gcacgctggt ccttgtcggt tcgctgactg caggttggtc
     4921 cgctgtgaca gccgaccagc ggaccgagtg gacctacgcg gaggcgctga tggccgccac
     4981 gacaatggcg accacgctca tgccgtactt cgccgggtcg aagcgaggcg caccgtcaag
     5041 accgccccgg agatcgcgaa gaggaatgcg gtgaccgcga gccaatgccg tagcagcggc
     5101 ggcgggggca gcccggaggc atcctggatc accgtgggca gtcccaggat caacggaagc
     5161 cacaccagca acagcacacc ggagaccacg gcaggtaccc gcaggtagtt cagccatcgg
     5221 acaccgccca cggtggccaa cgccggacgg cggcgtaaca acacgaccag agcggcgtcc
     5281 aatccggcgt agagcgggaa cagcaggaga tcatggccgg ccgcgctgcc gacgaaccag
     5341 gtaccaaccc cgaccgggtt gcccgacagc aaccggattc cggcatagcc gacgaccacg
     5401 aaactcgcca gcagcgccag caattggacg gattcgcggc gagtcatggc gctgatccgg
     5461 cgaggaatgt catgcgggta acccatttgg tgttgtgtac gccgggcagg gcgggcacca
     5521 cgacccgggc cgggaatccg tggtcgagcg tcaggtccgc accattgacc tggagggcga
     5581 ggagagcgtc tgcggctccg gcctgcccgg cggacagcgt cgccgagcca aaaccgccac
     5641 cgcgctggag ggattcgacg aacaaccggg cacccggcgc cgccccggcg agggccgcga
     5701 gatcaaccag ccgtaccccg gtccaggtct gcacgccggt ggaccagcct tccacgcagg
     5761 cgatcggcaa ccgggcggtg tgctgtggca acgccagcag ctgcacacgg gagagagagc
     5821 ggctcgtgtc gcccttgagc tcgaggcgcc aggtgtcatc gaccggtgcg attccggccc
     5881 cggcagcggt cttgttcacc tggaagtccg gctgttccgg ggcgctcgat ccgagatccc
     5941 gcccgcgggg ggccagcagc gcggtggatc gggccgctcc accgatggtc tggcccacgc
     6001 tgagcccgag cagcaccagc gagctggctg cgaccatgcc cagcgcaccc cgccgcgaga
     6061 tggttgccgg cgcgggatct ggagacacca ggtgatcggg atcgggcggc tccgcggtgg
     6121 tctgttccag cggagtgcgc agctcgttgc gcaggctgcg agatcgcagc gcggtgacca
     6181 tccggcgcag ccgaaaagct acgtgcacga ggaacgcggc gatgaacacc catgccccgt
     6241 agtagtgcgc ctggtagaac ccgaacggcc aggcgtagaa gtactggatg ttcatcacgc
     6301 cggtgaccag ctcgaacacc gcaccaccga cgagcagcaa cagcgaggcg cgctccacca
     6361 gatgagtcag cgagcgggcc ggcggccact cgaacagctt gggcagcacc gaccacagct
     6421 tggccagcac gatcgggatg agcaccaggc cgagcgtgac gtgcacgccc tgggtgaccc
     6481 agtacagcca ggacggcccg gcgggccagc cgggcagcca cgaaccgagc aaccccttgt
     6541 ccggggtggt gtcgttgccc ggagccaggt tggggttgta ggcggcatag gacgccagcc
     6601 cggtgaggaa catcagcgtg atgcccgcca gcagcaccac gctgagcacc gcggtgaacc
     6661 acgggccgcg cagcgggcta cgccagaacc cggcccggaa gggacccggt ggggggtgct
     6721 cagttgcccg tcggacccac cgatccagca ccgtcatggt ccttaacgct agctgcccac
     6781 cagcgtgcag ggattaccgt ccgccgacgt gacgcagctc gacgaaacaa cggtcctcgc
     6841 agtgccggtc ccccacttcg agcccggcca gcgcagccag
//
LOCUS       DASVXZ010000665         5126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1471669, whole genome shotgun sequence.
ACCESSION   DASVXZ010000665 DASVXZ010000000
VERSION     DASVXZ010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5126
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471669"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            261..1790
                     /gene="asnB"
                     /locus_tag="VF788_14040"
     CDS             261..1790
                     /gene="asnB"
                     /locus_tag="VF788_14040"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010236089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEX8935280.1"
                     /translation="MCGIVAAFGEVDTGKCERMLNRVQHRGPDDTGILALDAAWLGHQ
                     RLSIVDVSRGRQPLANGDGTAWIIGNGEIYNHENLSAKLPPGILRTQSDTEAALHLVM
                     RDGPASVAELSGMFALAMVTTTGDGLVARDPMGVKPLYWINGADGTLFASELRAFDAE
                     DRPRVASFPPGCLWTPATRIVRYANSVPVDVCPARRAQQPAWDNAALERIRNSLVLSV
                     QRRMMSDVGVGVFLSGGLDSAIVAAIAAEYTRRRGDVLPTFAVGTKDSSDLLAARRVA
                     EFIGSDHYEVVATAESVGEELANAVEVIEHYDPALVRSAVPNLLLAREAAKKVKVVLT
                     GEGADELYGGYRYVHGPDFAHPDALHAELVRSLEQLHHLNLQRCDRTTMYFGLEAREP
                     FLDTNVVRTALALPPEWKKTPDGRPEKAMLREAFTDWLPEELLWRGKEQFGDGSGAGE
                     VLAVLASDAANAADIRGISQQPPDSWALRSDEEVLYYGIWQRYFSGVRPNSTLGRFAT
                     P"
     gene            complement(1799..2701)
                     /locus_tag="VF788_14045"
     CDS             complement(1799..2701)
                     /locus_tag="VF788_14045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEX8935281.1"
                     /translation="MATLCASRSAAAVWEVAMRITLAQIDSRPGELETNIVRAEQVIA
                     HAVSEGTDLVVFPELSLSGYSIGELKEDLSISPDDDRMAKLAKEAKGAGVLVGFPEAQ
                     AHGLHIYNSAAYHENGVLVHVHRKLFLPNYAIFEERKHFLPGQSSCAFPILGGRHRAA
                     TLVCNDAWQPQLAYVATQDGAIILLVPACSAQSVFPERYDSRSYWRGITRFYGRMFQL
                     YVVFVNRVGTEGPLHFWGGSHIVDPWGEVIAEADEHKEHLLTVNVDLSLVRRRRRDIP
                     LVREGRLGLLRREIDRLLEEGGDL"
     gene            complement(2816..3616)
                     /locus_tag="VF788_14050"
     CDS             complement(2816..3616)
                     /locus_tag="VF788_14050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8935282.1"
                     /translation="MSLIKPTAPVTATAVDFEVLLPEVEHDLDLDQDEEWCEVLVDGG
                     QRRIRFHDYHEIYNIPGLYERLFYDTLKCASPRVIRNQLAQVLAERGTEPSELRVLDV
                     GAGNGIVGEELRELGAGTIFGVDIIEEAAAAAHRDRPGVYDRYLVADLTDLAPDQRAT
                     LAEADINTMTTVAALGFDDMPPHAFASAYNFVSTPGLAAFTIKEDFVASRDLSGFSKL
                     IARMLDEKVIRPLAEQRYRHRLSVRGEPLYYVGYVAEKVRDIPRAWLD"
     gene            complement(4381..5126)
                     /locus_tag="VF788_14055"
                     /pseudo
     CDS             complement(4381..5126)
                     /locus_tag="VF788_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011599256.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          901 a         1621 c         1679 g          925 t
ORIGIN      
        1 ctggctgcgt cgttaggcgg cgaggtgctg gagctaccca cgccgacgac gacggccccc
       61 actgccgtcc ccgcttggtg cttaggggag gggtcaacgg ggccagcaca gaatggcact
      121 attgcatgcc gtgcccaagc cggtgcctga cgcaggtggt gcggctcagc gcaacgttct
      181 ggagtgtgag tcggatctat atcgctggat gcgccgctac cttctgatgt tcaatgggat
      241 accgggtagg tgataccacc atgtgcggga ttgtcgcggc cttcggtgag gttgacaccg
      301 gcaagtgcga acggatgctc aaccgggtac agcatcgggg accggatgac accgggatac
      361 tggcgctcga cgccgcctgg ttgggccacc agcgactttc tattgtggac gtcagccgcg
      421 gcaggcagcc gctggccaat ggtgacggca cagcgtggat catcggtaac ggtgagatct
      481 acaaccacga gaacctcagc gcgaagctgc cgcccggaat tctccgcacc cagtcagaca
      541 ccgaggcggc gctgcatctc gtgatgcgcg atggcccggc ctcggtggct gagctcagcg
      601 gcatgttcgc gctggcgatg gtgaccacca ccggggacgg gctggtcgct cgcgacccga
      661 tgggcgtcaa accgctgtac tggattaacg gggcggatgg cacgttgttc gccagcgagc
      721 tgcgcgcctt cgacgcagag gaccggcccc gagtggcatc attcccgccg gggtgcctgt
      781 ggaccccggc gactcgcatc gtgcgctatg ccaactcggt tccggtggac gtctgccccg
      841 cccgccgcgc acagcagccg gcctgggaca acgcggcgct cgagaggatc aggaactccc
      901 tggtgctgtc cgtacagcgg cggatgatga gcgacgtcgg ggtaggggtg ttcctctccg
      961 gcgggttgga ctcggcgatc gtcgccgcga tcgccgcgga gtacacccgc cgccgcggtg
     1021 acgtcctgcc caccttcgcg gtcggcacca aggacagcag tgacctgctg gcggcccggc
     1081 gagtcgccga gttcatcggc agcgatcact atgaggtcgt cgcaactgcg gagtccgtcg
     1141 gcgaggaatt ggccaacgcg gtcgaagtga tcgagcacta cgacccagcc ctggtccgca
     1201 gcgcggtgcc gaacctgctg ctggcgcggg aggcggccaa gaaggtcaaa gtggtgctca
     1261 ccggtgaggg cgccgacgag ctttacggcg gctaccgcta cgtccacggt ccggacttcg
     1321 cccacccgga cgcgctgcat gccgaactgg tgcgcagcct cgagcagctg catcacctga
     1381 acctgcagcg ctgcgaccgg acgacgatgt acttcgggct cgaggcccgc gagccgtttc
     1441 tcgacaccaa cgtggtgcgc accgcattgg ccctgccacc ggagtggaag aagactcctg
     1501 atgggcggcc ggagaaagcg atgctgcgcg aggccttcac cgactggctg cctgaggagc
     1561 tgctctggcg cggcaaggag cagtttggtg atggctccgg tgccggcgag gtgctcgctg
     1621 tgctggcctc ggacgcggcc aacgccgccg acattcgagg gatttcccag cagccaccgg
     1681 acagttgggc cttgcgcagc gacgaggagg tcctctacta cgggatctgg cagcgctact
     1741 tctccggagt gcgccccaac tcgacgctgg gccgcttcgc gaccccttga gtggtgacct
     1801 aaagatcgcc tccctcttcg aggagacggt cgatctcccg gcgcagcaga ccgagccgtc
     1861 cctccctcac cagcgggata tcacgccgtc gtcggcgcac cagcgaaagg tcgacgttga
     1921 cggtcagcag atgctcctta tgctcgtccg cctccgcgat cacttcgccc cacggatcga
     1981 cgatatgtga gccgccccag aagtgcagcg gcccctcggt gccgacgcgg ttgacgaaga
     2041 ctacgtatag ctggaacatc cgcccgtaga accgggtgat gccacgccag taagaccgcg
     2101 agtcgtaccg ctcggggaac acgctttgcg cgctgcatgc gggcacgagc aggatgatcg
     2161 ccccgtcctg ggtggccacg taggccagct gcggctgcca cgcgtcgttg cacaccaggg
     2221 tggccgcgcg gtgccgtccg cccaggatcg ggaaggcgca ggacgactga ccgggcagga
     2281 aatgcttgcg ctcctcgaag atcgcgtaat tgggcaggaa cagcttgcga tgtacgtgca
     2341 ccagcacgcc gttctcgtgg taggccgcgc tgttgtagat atgcagaccg tgtgcctggg
     2401 cctcgggaaa accgaccagc acacccgcgc ccttggcctc cttggccagc ttcgccatcc
     2461 ggtcgtcatc cggggagatc gagaggtcct ccttgagctc accaatcgag tagccactga
     2521 gtgacagctc ggggaagacc accaggtcag tgccttcgct gaccgcatgt gcgatcactt
     2581 gctcggcacg cacgatgttg gtctcgagtt cgccgggtcg agagtcgatc tgtgcgagcg
     2641 tgatgcgcat cgctacctcc cagacagcgg cggcggaacg ggacgcgcac aacgtagcca
     2701 tttaggacgt tctgatcggc atcaggtgcc ggtgaggccc tgttgccgcc gccggtcgtc
     2761 cccatgaggt gtcaactggc ggcggccgcg ctcatgactt ctcccacgat ctcggtcagt
     2821 cgagccaggc ccgggggatg tccctgacct tctccgcgac gtaccccacg tagtacagcg
     2881 gctcgccccg caccgacagg cggtgccggt agcgctgctc agccaagggt cggatgacct
     2941 tttcgtcaag catccgagcg atcagtttgc tgaagccgct cagatcgcgt gaggcgacga
     3001 aatcttcctt gatagtgaag gccgccagac cgggagtgga gacgaagttg taggcggaag
     3061 cgaaagcatg cgggggcatg tcgtcaaagc ccaacgcggc gactgtcgtc atcgtgttga
     3121 tgtcggcttc ggctagcgtg gcccgttgat cgggggccag atcggtgagg tcggcaacga
     3181 ggtatcggtc atagactccg ggtcggtccc ggtgggccgc ggcggctgcc tcttcgatga
     3241 tgtcgacgcc aaagatggtc ccggctccaa gttcacgaag ctcctcgccg acgattccgt
     3301 tcccagcccc gacatcgagc acccgaagct cgctcggctc ggtccctcgt tcggcgagca
     3361 cctgagccag ctggtttcgg atcacgcgtg gtgacgcaca cttgagtgtg tcgtagaaca
     3421 gccgctcgta gaggccggga atgttgtaaa tctcatggta atcgtggaag cgaatgcgcc
     3481 tttgcccccc gtcaaccaaa acctcgcacc actcctcgtc ctggtcgagg tcgaggtcgt
     3541 gctcgacttc gggaagcaga acctcgaagt caacggcggt agcggtcact ggagcggttg
     3601 gcttgatcaa actcatgacg acactaatcc tctcgtggag tccactcggc cagcggatat
     3661 cccattaccg accgacgccc ccgcacgtga ggaaagaagt ataccgtgtc ctaacccgtt
     3721 cggcgttcga aggcggttac ggagcgggac cgccaggaca tcgagcattg ccggaggcta
     3781 cccgaaaacc tgcatgtgat gcgtcccttt cggcctggca gtcccatgtg tccgtgcacg
     3841 gcaatcggta ccttgcgcga tggtgacgtt cgtgtcgcag cgggtgggcg attccacacc
     3901 ttcgttcgaa gcggttgcct cccagcaggt tcatgaaccg ccatgacgta ggtgaccggc
     3961 tacagcgttc gtaacgctgg gaggatcatc gaggctacaa gcctcggccc agtgccgcac
     4021 ttgtcttgaa gcaaccctcc gtcgagggga cgcagccgat cccgcgatag acgatcttgc
     4081 aagtgatggg gtcttcgaga ccgatgagga acttgacggc cagcttgcgt tggttgtcgc
     4141 ctcccgaatg gcgtcaccgt actaactctt ccggccagtt caaatagacg ggaccactat
     4201 ggactacgtg aacatgggat tgggcatgaa ctaggttcca acagggcatc tcatgcccat
     4261 cggcgacggt ccctgtttcg ccgcgaccaa cacctatgac gggaagaggt atcgcgagtt
     4321 acacggttga ccggtgacaa gcctttcgag caatagtcaa tacctgtgga ttaagatctt
     4381 ttaggcggct tcggcttggg ggtgttcgtc gggtcgctcg atgagcttgc cgtcgatgaa
     4441 ggtgacgccg gcacggacga gcgcgacgag gtggggtgcg ttgaccgcgc gccagcggtc
     4501 ctgtgcggcc tcgataagct tgaacgccat cgccagtccg gccgcgcgcg atcccggccc
     4561 gcgggtgatc ttcgtgcggt gccggacggt ggcaaaggtc gactcgatgg ggttcgtggt
     4621 gcgtaggtga atccagtgtt cggcggggaa gtcatagacc ctgagcagct cctcgacaag
     4681 tcatagaccc tgagcagctc ctcgacatca tcggtgatct tcgcgactgc cttggggaac
     4741 ttccccccgt acgcggcctg gaacgaggtc acggcgtcac gagcatggcg cttgtcctcg
     4801 gcgttccaga tctccgcgag ggctttcttc gcgccgggat gggcagattt cggcagcgcg
     4861 ccgagtacgt tggcgatttt gtggaaccag cagcgctgct cccgcgtggt cgggaacacc
     4921 tcgcgtagcg cgccccagaa tccgagcgca ccgtccccga cggccagcac cggcgcgcgc
     4981 atcccgcgcc gggcggcatc gcgcaggagg tccgcccacg actcggtcga ctcccggtac
     5041 ccctcggcga gcgcgacgag ctctttgcgt ccgtcagccc gcaccccgat catgaccagt
     5101 aggcacagct tgtgctcctc cagtcg
//
LOCUS       DASVXZ010000666         2063 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_753859, whole genome shotgun sequence.
ACCESSION   DASVXZ010000666 DASVXZ010000000
VERSION     DASVXZ010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753859"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VF788_14060"
     CDS             complement(<1..265)
                     /locus_tag="VF788_14060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935283.1"
                     /translation="MSLVEKVKDAAGPVIGMAGPVVAQAIDKATPLVDMALEKANPYI
                     EQAKEAATPYVEVAREITAPLVEQAINKAGPYAEKIAVTYGPIV"
     gene            340..552
                     /locus_tag="VF788_14065"
     CDS             340..552
                     /locus_tag="VF788_14065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935284.1"
                     /translation="MLVDSSDHAVGGVVTMQVSEADRERWRERVFGEVLPEGTADDRP
                     DPGEVNPDERDRWLLDNRPPHHDTAR"
     gene            complement(583..1170)
                     /locus_tag="VF788_14070"
     CDS             complement(583..1170)
                     /locus_tag="VF788_14070"
                     /inference="COORDINATES: protein motif:HMM:NF020250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAF domain-containing protein"
                     /protein_id="HEX8935285.1"
                     /translation="MGRSVFLRRAAAMGFVGLAALLALNRESSAEGVMVVAARDLSPG
                     TVVGSSEVMLRELPPQAVPDGAARSPAVVVGRTLAAPVRRGEPLTDVRLTGSELTQAV
                     SPDPAMVSVPVRLADPGVAAVLHPGVTVDVVTISEPQGEPVVLARGARVLAVLESGAR
                     PGDRDGRLVLVALAPVAATRVAATSISQNLTVMVH"
     gene            complement(1398..1730)
                     /locus_tag="VF788_14075"
     CDS             complement(1398..1730)
                     /locus_tag="VF788_14075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010236154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdB family zinc ribbon protein"
                     /protein_id="HEX8935286.1"
                     /translation="MPTYSYACTACEHHFDTVQKFTDASLTDCPECSGRLRKLFSSVG
                     IVFKGSGFYRTDSRTSSSDKPGSNGKSESSTKDKSDSKQSESSSDSKAGSSSASSTAS
                     ASATSSTS"
     gene            complement(1820..>2063)
                     /locus_tag="VF788_14080"
     CDS             complement(1820..>2063)
                     /locus_tag="VF788_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEX8935287.1"
                     /translation="AVIATAVLVLVPALAVDWHGTRLGRGGGHYDRTLPLTSPGTPLV
                     AVVRDDEVLPSVPVQPHDVPVTAALTPERGLFPLPC"
BASE COUNT          362 a          686 c          678 g          337 t
ORIGIN      
        1 cgacaatcgg gccataggtt accgctatct tctcggcgta cgggccggcc ttgttgattg
       61 cttgctcgac gagcggggcg gtgatctccc tggccacctc gacgtagggg gtggcagcct
      121 ctttagcctg ctcaatgtag ggattggcct tctccaaggc catgtccacg agcggggtgg
      181 ccttatcgat ggcctgcgcc acgacagggc cggccatacc gataaccggg ccagccgcgt
      241 ccttaacttt ctccacaaga ctcatggtgg gagcccttcc ggtggtgtga gagcgaggac
      301 cctatcctgg cactgggatc cattagcggg aagtgatcgg tgctggtgga ctcgtccgat
      361 cacgctgtcg ggggggttgt caccatgcag gttagcgagg ctgaccgtga gagatggcgc
      421 gagcgcgtgt tcggggaggt gctgcccgag ggcacggcag atgaccggcc ggaccccgga
      481 gaggtcaatc ccgacgagcg ggaccggtgg ctgctggaca accgcccccc gcaccatgac
      541 acggcccggt gattcgcccc cggttctcac tcgacgctgt cctcagtgga ccatgacggt
      601 caggttctga gatatcgagg tcgccgcgac ccgggttgcg gcaacgggag cgagcgcgac
      661 gagcaccagc ctcccgtcgc gatctccggg gcgggcgccg gattccagca ctgcgagcac
      721 ccgcgcgccg cgggccagca ccaccggctc gccctgcggt tcgctgatgg tcaccacatc
      781 gacggtgaca ccaggatgca gcactgcggc cacgccagga tccgcaagcc gcactggcac
      841 gctcaccatc gccggatccg gcgagaccgc ctgggtgagt tcggaaccgg tcagccggac
      901 atcggtcagc ggctcacctc gccgcaccgg tgcggccagc gtccggccca ctacgacggc
      961 cggcgaccgc gcagcgccgt cgggcaccgc ctgtggaggc agctcgcgca gcatcacctc
     1021 gcttgagccg acaacggtgc ctggggacaa atcccgggcg gcgaccacca tcacgccctc
     1081 ggccgatgat tcccgattca gcgccagtag cgcggcgagc ccgacgaacc ccatggcagc
     1141 agcccggcgc aggaacacgc tgcgacccaa cccggatcct cgcctgaggg catcccaccg
     1201 ccaccgcaca aaggcaccaa gcccggcacc aacgcgttcg gatcgtctcg gcggtgtcat
     1261 cgcccgatcc ctgacttcga tctcgtcgtc acgattgtca cggtaggcaa gtctggtcgg
     1321 gggcggcggt cgccattccg caacctgtgg acaaccgggt acttgtggac aaccgggacg
     1381 ttaacgcgcc taaatcctca cgaggtgctg gaggttgccg acgcggaggc tgtcgaggat
     1441 gccgagcttg aaccggcctt cgagtcggag gaggattccg actgcttgga gtcggacttg
     1501 tccttagtgc tggactcgga cttaccgttc gagccgggct tgtccgagct gctggtccgg
     1561 ctgtcggtgc gatagaaacc gctccccttg aacacgatgc ccaccgagga gaacaactta
     1621 cgtagccggc cggagcactc ggggcagtcg gtcagcgacg cgtcggtgaa cttctgcacg
     1681 gtgtcgaagt ggtgctcgca cgcggtgcac gcgtaagagt aggtcggcac gtctcgccct
     1741 ccacgtaact agcactccac gcacgagagt gccaatacga tgatagcaag gctagtcacc
     1801 ccgccgtcgc aggtgtatct cagcacggta acgggaacag acctctttcc ggcgtgaggg
     1861 ccgctgtgac cggtacgtcg tgtggttgca ccggcaccga gggcaacacc tcgtcgtcgc
     1921 gtacgacggc aaccagcgga gtgccgggac tcgtcagcgg cagtgtccgg tcatagtgcc
     1981 caccaccgcg tccgagccgg gttccgtgcc agtcgacagc cagcgcgggt accagcacca
     2041 gaactgcggt agcgatcact gcg
//
LOCUS       DASVXZ010000667        12107 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1598970, whole genome shotgun sequence.
ACCESSION   DASVXZ010000667 DASVXZ010000000
VERSION     DASVXZ010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12107
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1598970"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1041
                     /locus_tag="VF788_14085"
     CDS             112..1041
                     /locus_tag="VF788_14085"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005447869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX8935288.1"
                     /translation="MSEIRTLPVPDGLDGMRVDARLARLLGLSRAVVAGLTEARAVFL
                     DGSPAGKSDRLAAGAWLEITLPDPQQPVLITAKPVAGLRVLHDDADVVVVDKPVGVAA
                     HPSPGWTGPTVLGGLTAAGIQVATSGAAERHGVVHRLDVGTSGVMVVAKSEHGYSALK
                     RAFRDRTVAKHYRALVQGHPDPTRGTIDAPIDRHPKQDWRFAVIAGGKPSVTHYEVIE
                     AFPAASLCDVTLETGRTHQIRVHFAALRHPCCGDLTYGADPALAQRLGLERQWLHAAR
                     LGFPHPADDHWAEFTSPDPDDLRHALDVLAAQA"
     gene            1045..1704
                     /locus_tag="VF788_14090"
     CDS             1045..1704
                     /locus_tag="VF788_14090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935289.1"
                     /translation="MPPRARWVALAVLAVVFALTIWAAGQRGEPLTAGAERLGPGAGE
                     QVADYLRRAERSLPAGGSRPVWALVQLDSYLTPAPAAELARGVRLSRVIIRVPLPRIQ
                     TALITRDLPGQRPVAELTEALRSAAQDRAAVASRQHGRPAALAAAEAAQLRTGCACVV
                     ALLVFGDGEALRVVATRPGTRAVHAALPDTPIQDLAISPLLPEQLDRAGPVPDDGPVP
                     S"
     gene            1788..2549
                     /locus_tag="VF788_14095"
     CDS             1788..2549
                     /locus_tag="VF788_14095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8935290.1"
                     /translation="MATVRSEGGDPSRSLALLWGSDQPTRTRGPKPGLTVQGIVRAAI
                     DLADSEGLAALSMRRVAERLGVGTMSLYTYVPGKAELVDVMLDAVHLETSAEVADGTW
                     RQQLEAMARDQWALARRHPWMLHIATTRPPLGPGIIAKYERELRTVNGLGLDDIEMDS
                     IITLINDYVAGAARSAIDALDVQRSSGMDDAAWWAATGPWLANGDPEHYPVASRVGTT
                     TGQHYQAVSDPDHAFEFGLQRVLDGIELLVQRRGG"
     gene            complement(2579..3049)
                     /locus_tag="VF788_14100"
     CDS             complement(2579..3049)
                     /locus_tag="VF788_14100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8935291.1"
                     /translation="MTPVDADAAAVCAASHLFDQEVRLEWVQQFLAQPDHHLCIAYAS
                     GGEPTGLVSGVELTHPDKGTEMFLYELGVDDRFRGRGIGKALVAALTDLARERGCYGV
                     WVLTDSDNSAAVRTYKSAGINDPSEHLMLICNLDMPRSHPSMTRRRREPCPPQP"
     gene            3298..3708
                     /locus_tag="VF788_14105"
     CDS             3298..3708
                     /locus_tag="VF788_14105"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX8935292.1"
                     /translation="MGDEAASPYWPFDDPSATRFAIVLDGAVIGMVQYGEEEEPAYRH
                     ASIDIFLDPVVHGRQIGRDAVGTLARHLVHDRGHHRLVIDPAADDESAIRCYSAVGFR
                     PVGIMRRYERNADGTGWHDGLLMDLLAEELDQPC"
     gene            complement(3788..4063)
                     /locus_tag="VF788_14110"
     CDS             complement(3788..4063)
                     /locus_tag="VF788_14110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935293.1"
                     /translation="MWPEPDRMATLSAYLPAAEAVGVFAVLAGTPAEPGIPAMSAAWT
                     RAGATPWSIRYSTPPATAAQAPVRFAHAPPSQAILPAGIHITQNRYR"
     gene            complement(4224..4619)
                     /locus_tag="VF788_14115"
     CDS             complement(4224..4619)
                     /locus_tag="VF788_14115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935294.1"
                     /translation="MRWSEYLPDGMLADLLAQPAETDPEHREFEALERIGGWERIIAW
                     AQSLADPGAGLVHAQRGDAELGVGSRRLAGSRIPRGRGRPDAEVSARTTASRVDDAWS
                     LSTRLPGTPAALEQGRITLAKHVSWPARR"
     gene            4929..8471
                     /gene="dnaE"
                     /locus_tag="VF788_14120"
     CDS             4929..8471
                     /gene="dnaE"
                     /locus_tag="VF788_14120"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEX8935295.1"
                     /translation="MPGESFVHLHTHTEFSMLDGAARLDDLFTECARMGMPALAMTDH
                     GNVFGAYEFWKKANAHGVKPIIGMEGYLSPGSRHERKRVVLAGGVSGEDNPGEMYTHM
                     TLLAENTEGMHNLFRLSSLASLEGYYYKPRMDRELLATYGKGIIATTGCPSGEVQRLL
                     QRDKFDAACQAAADYRDIFGRENFFCELMDHGIEIERRVRDDLARLKKTLDLPGLATN
                     DLHYTFPEDAKPHEVLLCVQTGKTMSDPNRFKFDAQDFYLKSPQEMREQWDGEFPEAC
                     DNSLRIAERIHVEFVEGRDLMPRFPVPEGENESSWLVKEVERGLRQRFPNGLPDTHRR
                     QADYEVGVICQMGFPGYFLVTADLVGYAKANGIRVGPGRGSAAGCLVAYALGITDLDP
                     IRHKLIFERFLNPDRISMPDIDMDFDERRRGDMIRYVTEKYGEDRIAQIITYSTIKAK
                     AAIKDSARVLYGQPGYSVADRITKAMPAPVMGKDIPLSGIFDPNHKRYPEATEVRALY
                     EADLQVKEIIDTARGLEGLKRQWGVHAAGVIMSSEPLIDIIPIQRRDSDGAIITQFDM
                     GACETLGLLKMDFLGLRNLTVIDDALRNIELNGKPALDLENLELDDTKAYQLLASGDT
                     LGVFQLDGGPMRDLLRRMVPTTFEDISAVLALYRPGPMGANAHNDYADRKNGRQEVRP
                     IHPELAEPLADILDETFGLIVYQEQVMAIAQRVAGYSLGKADLLRRAMGKKKKEILDK
                     EYETFSGGMRDAGYSAAAIKTLWDILLPFSDYAFNRAHTAGYGLVSYWTAYLKANYPS
                     EYMAALLTSVGDDKDKAAVYLAECRKMGITVLPPDVNSSERDFTAVGDDIRFGLGAIR
                     NVGGNVVDAIGRARTEKKSYTDFADFLRKVDAVACNRKVVESLIKAGAFDSLGHSRKG
                     LYLVHGEAIDVVMESKRAEAIGQFDLFGGQDGAAGLPNAFDVPVPAERWDAKHQLALE
                     REMLGLYVSGHPLRGVEHILARQADTPIASIIDGTVADGAQVIVGGILASVTRRVNRN
                     GEPWAAAQLEDLAAGIEVLFFPKTYSVVGVNVAEDGIVLVKARVTKRDDRISLIANDL
                     VVPELATPGSSAGEAGAGQPITVSMIAARCSPERVAQLKDVLARHPGTHEVRLSLVNG
                     GRKHLLKLDDALRVTPSSALMGDLKALLGPSCLS"
     gene            8620..11277
                     /gene="lanKC"
                     /locus_tag="VF788_14125"
     CDS             8620..11277
                     /gene="lanKC"
                     /locus_tag="VF788_14125"
                     /inference="COORDINATES: protein motif:HMM:NF038151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III lanthionine synthetase LanKC"
                     /protein_id="HEX8935296.1"
                     /translation="MDNGYEVYCIADPLFYDSMSGSNRVESFDAARRPVPEGWQRRPL
                     DNWVVMNPVGATVPPQGWKVHASACLDNAERILETVWAYCVPRGIPFKFLAARNVVHL
                     QNAKYAPRGSSGKFVTIYPTDIDTLGMILHDLGERLEGEPGPYILSDLRWNEGPLYVR
                     YGGFALRHCLSARGDRVPAIEDPTGALVPDRRDAVFYTPPWVALPDLLVPQLAARNAT
                     NVKELPYRVEQVLHFSNGGGLYEATDQRTGTRVVLKEARPHAGLAADGADAVQRLQRE
                     REVLDSLAGVEGVPVVHDHFSLGEHHFLALEFIEGTPLNKVFAKRYPMNDPAAGPAEF
                     AAYTEWALRMCAQVEGIIKAIHGRGIIHGDLHLFNVIVRDDGRITLLDFEVATRIDET
                     RRPTLGSPAFAAPTDRTGFDIDRYSLACLRLALFLPLTAIIRLDAGKPMDFAEVIAEH
                     FPVPPAFLDGAVRTITGAVGAQGDASRRRARPLPALPDGTIGWLAARNSIVAGILASA
                     TPKRADRLFPGDIAQFSTGGLNIAHGAAGVLYALSVTRAPQYLAGEHWLLERAAAAAR
                     GTRLGLYDGLHGVAYVLAELGYRQAALDLIEFCLTEPSEQLGMDLSGGLAGIALNLAH
                     FAGLAGEPSLFDHALRVADIVADRLGGPESVGTISGGDHPYAGLMQGSSGPALMFLRL
                     YEHTGDREFLELSRTALRQDLRRCQRREDGSMMVNEGWRAMPYLDRGSAGIGMILDEY
                     LTHQVDDEFAEAAAAIRKAARARFYIQPGLFSGRAGMILYLSRAYPPGHAVWDQEVAA
                     QIRRLGWHGVDYRGHLAFPGEQLLRLSMDLASGAAGVLLALGAAVHEHPVGLPFLCEP
                     RQLPPHDAPVPAVLMGRNGLVSTSAFGGR"
     gene            11283..11399
                     /locus_tag="VF788_14130"
     CDS             11283..11399
                     /locus_tag="VF788_14130"
                     /inference="COORDINATES: protein motif:HMM:NF033212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SapB/AmfS family lanthipeptide"
                     /protein_id="HEX8935297.1"
                     /translation="MALLDLQAMEPAGGYDDCHGHDRYDHCCGSGLSLLLCG"
     gene            11520..>12107
                     /locus_tag="VF788_14135"
     CDS             11520..>12107
                     /locus_tag="VF788_14135"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEX8935298.1"
                     /translation="MYNDPARAPAAPQNVPAAAPADRLLLSTGLRGGLWIWVLALATL
                     ATASADILLPTALGRALDALPGGGDISWALLTCAGLIAIMVTGKVVGDIATGTSNARC
                     TAWLRMTLVRHLVSIGPAATRRFEPGDLVTRVTRNASEAGQVGVTTVMVVAGLIPPVG
                     GIVALMAIDWWVGLAALAGLVTMAVLVRVFVRHNTE"
BASE COUNT         2060 a         3963 c         3989 g         2095 t
ORIGIN      
        1 caacctggcg gactcggcca tcgtgtgcgg cggcctcgca ctggtcttac tcgccgcctc
       61 gggccgagac ttcgatggca cgcgcactgc ccggcgcccg gtaggtcagg aatgagcgag
      121 atccggacgt tgccggtgcc cgatggcctt gacgggatgc gggtggacgc caggctggcc
      181 cggctgctgg ggttgtctcg tgcggtggtg gccggcctga ccgaggccag ggcggtgttc
      241 cttgacggca gtccggcagg caagtccgac cggctagccg ccggcgcgtg gctggaaata
      301 acccttcctg atccgcagca gccggtgctg atcaccgcta aaccggtggc gggactgcgt
      361 gtgctgcacg acgacgccga cgtggtggtg gtggacaaac cggtcggggt ggcggcgcac
      421 cccagcccgg gttggaccgg tcccactgtg ctgggcggtc tcaccgccgc tggcatccag
      481 gtggctacct cgggcgctgc cgagcgccac ggcgtcgtgc accggctgga cgtgggcacc
      541 agcggcgtga tggtggttgc caagtcggag cacgggtact cggcgctgaa acgggccttt
      601 cgggatcgca ccgtggccaa gcactaccgg gcgctggtgc agggtcaccc ggatcccacc
      661 cggggcacca tcgacgcccc gatcgaccga caccccaagc aggactggcg tttcgcggtc
      721 atagccggtg gtaagccgtc ggtcacgcac tacgaggtga tcgaggcctt cccggccgcg
      781 tcgctgtgtg atgtcactct ggagaccggc cgcacccacc agatccgggt tcatttcgcc
      841 gcgctgcgcc acccctgctg tggcgacctc acctacggtg ctgaccccgc gctcgctcag
      901 cggctcgggc tggagcggca gtggctgcac gccgcgcggt tgggcttccc gcatccggca
      961 gacgaccact gggcggaatt caccagccca gaccccgatg acctacgcca tgccctggac
     1021 gtgctggctg cgcaggccta gccgatgcca ccacgagccc gctgggtggc gctggccgtg
     1081 ctggccgtcg tgttcgccct gacgatctgg gcggccgggc agcgtggcga gccgcttacg
     1141 gctggcgctg agcggctcgg ccccggggcc ggcgagcagg tcgcggacta cctgcggcga
     1201 gccgagagat cgctgcccgc agggggctct aggccagtgt gggcactggt acagctggac
     1261 agttacctca cgcccgcgcc agcggccgag ctggcgcggg gtgttcggct ctctagagtg
     1321 atcatccggg ttccgctacc gcggatccag actgcgttga tcacccggga cctgcctggg
     1381 cagcggccag tggctgagct caccgaggcg cttcggtccg cggcgcagga tcgtgccgca
     1441 gttgcctccc ggcagcatgg gcggcccgca gcgctcgccg ctgcggaggc cgcgcagctg
     1501 cgtaccggct gcgcttgtgt ggttgcgttg ctggtattcg gcgatggtga ggcgttacgg
     1561 gtagtggcca cccgcccagg tacccgggca gtgcatgccg ccctacccga tacacccatt
     1621 caggacctgg cgatctcccc attgctgccc gagcagctcg acagggccgg acccgtgccc
     1681 gacgatgggc cggtgccatc ttgatcatgg actagggctc gagtacccca gcacgttgta
     1741 cggtacagcg tactgagtaa cttagatcgc gggattagga tgaccgcgtg gcgactgtcc
     1801 ggagcgaagg cggagacccc tcacgaagct tggcattgct gtggggatcc gatcagccca
     1861 cgcggacccg cggccccaag ccgggtttga ccgtgcaggg catcgtccgg gctgccatcg
     1921 acctggccga ctccgagggt ttggctgcct tgtccatgcg ccgggtcgcc gaacgtctcg
     1981 gcgtgggcac catgtcgctg tacacctacg tgccgggcaa ggccgaactc gtcgacgtca
     2041 tgctcgacgc cgttcacctt gagacctcgg ccgaggtcgc cgacggaacg tggcggcagc
     2101 agctcgaggc catggcccgg gatcagtggg cgctcgcgcg gcggcatccg tggatgctgc
     2161 acatcgccac cacgcggccg ccactgggcc cagggatcat cgccaaatac gaacgggagc
     2221 tgcgtactgt taacggcctc ggcctcgacg acatcgagat ggactcgatc atcactctta
     2281 tcaacgacta tgttgccggt gccgctcgga gcgcgattga cgctctagac gtccagcgca
     2341 gcagcggcat ggacgatgca gcctggtggg cggctaccgg accttggctc gccaatggtg
     2401 accccgagca ctatccggtg gcttcgcggg tcggtacgac cactggccag cactaccagg
     2461 ctgtttccga cccagaccac gccttcgagt tcggcctgca acgggttctc gatggcatcg
     2521 aacttctcgt ccagcggcgc ggtggataag cgacagaccg ttcctgcgcg caagtgcgtc
     2581 atggttgagg aggacaaggc tcacgtcttc gccgtgtcat cgatggatga ctgcggggca
     2641 tgtcgaggtt gcaaatcagc atgaggtgtt cactgggatc gttgatcccg gctgatttgt
     2701 aggtcctgac tgccgccgag ttgtctgagt cggtcaggac ccacacgccg taacaacccc
     2761 tctcccgcgc cagatcagtt agggccgcca cgagtgcctt gccaatcccg cgcccgcgga
     2821 aacgatcatc tacgccgagc tcgtacagga acatctcggt gcccttgtct ggatgggtca
     2881 actccacgcc tgacaccaac ccggtcggct cgccgccgct cgcgtacgcg atgcacaggt
     2941 gatgatccgg ctgcgccaag aactgctgta cccactccaa ccgcacctcc tggtcgaaga
     3001 gatgactcgc cgcgcagacg gcagccgcgt ctgcgtctac cggagtcatc cagtgcagtt
     3061 ccatgaggac aggatgtcgg atgtctgtca cttgcctgcg tcgacgagtg agaggtgtct
     3121 cgttcactga ccgacttcgt gccccgtgct ggcttgtgct gatcgcgccg agaatgatgg
     3181 cgatgtggac gacgcgggtc tcgaattgcg ggggaagcgc atcgtgctgg tgcccatcac
     3241 cgccgatcag gtgccggacc tacggcggat tctgcacacg cccgaggtac ggctgcgttg
     3301 ggggatgagg ccgcatcgcc gtactggccc ttcgacgacc cgtccgctac ccgattcgcc
     3361 atcgtgctcg acggggcagt gatcggaatg gtgcagtacg gcgaagagga ggagcccgcg
     3421 taccggcatg cctcgataga tatctttctt gatcccgtcg tgcacgggcg gcagatcggc
     3481 cgcgacgctg tgggcacgtt ggctcgccac ctggtgcacg atcggggcca ccaccgcctg
     3541 gtgatcgatc cggcggctga cgatgagtcg gccatccgct gctactcggc ggtgggcttt
     3601 cgccccgttg ggatcatgcg ccgctatgag cgcaacgccg atggcacggg gtggcatgac
     3661 ggcctgctca tggacctact ggctgaggag ctggaccaac cgtgctgaga acgcacacgg
     3721 tgggctcaga acggcggggg ttcatccgga tcggctgccc ggcgagtagc gaccggttca
     3781 aggtcggtca gcggtagcgg ttctgagtga tatgaatgcc cgctgggagg atcgcctggc
     3841 tcggtggagc gtgcgcgaac cgcactggtg cctgcgctgc ggtagccggt ggggttgagt
     3901 accggatcga ccagggcgtc gccccggcgc gggtccatgc tgcgctcatc gccggtatgc
     3961 ccggctcggc gggcgtaccg gcgagcaccg caaacacccc gacggcctca gccgctggca
     4021 ggtaggcgga cagagtagcc atcctatcgg gctcgggcca catctgtaca cctcgctccc
     4081 gccgagcccg ctcccctcgt tctgggctgc ggcagtagac aacaccgctt tgtgcgtcga
     4141 ggcgcgcagc tgaccaaggg tttgttgccg ggtcttgacc cgcacctact gctcgaccgc
     4201 tgcaatgtgt tcgtcggaga ggctcatcgt ctcgccggcc aagatacgtg cttcgctaag
     4261 gtgatgcggc cctgttccaa tgcggccggt gtgcccggca accgggtact gagggaccat
     4321 gcgtcgtcca cccggctcgc cgtggtgcgt gctgaaacct cagcatcagg cctacctcgg
     4381 ccacggggga ttcgtgagcc agcgagtcgc ctgctcccaa cgcccaattc cgcgtctccg
     4441 cgctgcgcat gaacgaggcc agctcccgga tctgccaggc tttgcgccca ggcgatgatc
     4501 cgttcccagc ccccgatgcg ctccagcgcc tcgaactccc gatgttccgg gtcggtctcg
     4561 gcgggttgag ccaggaggtc ggccagcatg ccatccggaa ggtactcaga ccaacgcacc
     4621 ggctctgcga ggccgcgccg atcctcgacc aagcagtcga tgacctcctc aggggggcgg
     4681 cgatcggcgg cgacggtact tccatgtcga acatatgttc gactatagtc ctgtgcagtt
     4741 gatcagcaag agcgtggcgg aacactgcgc gtcgcgggac gacacgcctg acccacctgg
     4801 gcttacgtca cggccgtcgc tgacgtgcac gaggcagccg agaaaggtcg ggcgtgcacg
     4861 ttaaggtggc ccggtctgcg acggtccgcg gctgcctgca tagcgtgatc aaggaggtcg
     4921 agatcccggt gcccggtgaa tcattcgtcc acctccacac gcataccgag ttttccatgc
     4981 tcgacggcgc cgcccggctg gacgacctgt tcaccgaatg cgcccggatg ggcatgcctg
     5041 ccctggcgat gaccgaccac ggcaacgtct tcggtgcata tgagttctgg aagaaggcca
     5101 acgcccacgg ggtcaagccg atcatcggca tggagggcta cctgtcgcct ggctctcggc
     5161 acgagcgcaa gcgagtcgtg ctggctggcg gcgtgagtgg tgaagacaat ccgggtgaga
     5221 tgtacaccca tatgacgctg ctcgcggaga acaccgaggg catgcacaac ctgttccggc
     5281 tctccagcct ggcaagcctg gaggggtact actacaagcc acggatggac cgcgaattgc
     5341 tggcgaccta cggcaagggg atcatcgcca ccaccggttg cccgtcgggt gaggtgcagc
     5401 ggttgctgca gcgggacaag tttgacgccg cctgccaggc cgctgccgac tatcgagaca
     5461 tcttcggtcg ggagaacttc ttctgcgagc tgatggacca tggcatcgaa atcgagcgcc
     5521 gggtccgaga cgatctggcc cggctcaaga agaccctcga cctgcccgga ctggctacca
     5581 acgacctgca ctacaccttc cctgaggacg caaaaccgca cgaagtgctg ctgtgtgtgc
     5641 agaccggcaa gaccatgtcg gaccccaacc gattcaaatt cgacgcgcag gacttctacc
     5701 tcaagtctcc gcaagagatg cgtgagcagt gggacggtga gttccccgag gcgtgcgaca
     5761 acagcctgcg catcgcggaa cggatccatg tggagttcgt cgagggccgc gatctgatgc
     5821 cccggttccc cgtgccggaa ggggagaacg aatccagctg gctggtcaag gaggtcgagc
     5881 ggggcctgcg gcagcgtttc ccgaacggcc ttccggacac ccaccgccgc caggccgact
     5941 atgaggtcgg cgtgatctgc cagatgggtt ttccgggcta cttcctggtc actgccgatc
     6001 tggtgggata cgccaaggcc aacgggatcc gggtcggacc gggccggggc tcggcagcgg
     6061 gctgcctggt ggcctatgcc ctgggcatca cggacctcga cccgattcgg cataagctga
     6121 tcttcgagcg gttcctcaac cccgatcgca tctcgatgcc cgacatcgac atggacttcg
     6181 acgagcgcag gcgtggcgac atgatccgct acgtcacgga gaagtacggc gaggaccgca
     6241 tcgcgcagat catcacctac tcgaccatca aagcgaaagc ggcgatcaaa gattcggcgc
     6301 gggtgctcta cggccagcct ggctactcgg tcgccgaccg gatcaccaag gcgatgccgg
     6361 caccggtgat gggcaaggac atcccgctgt ccggaatctt cgatcccaac cacaagcgct
     6421 acccggaagc caccgaagtc cgcgcactgt acgaggccga tctacaggtg aaggagatca
     6481 tcgacacggc ccgcgggctg gaaggcctca aacggcagtg gggcgtgcac gccgctggcg
     6541 tgatcatgtc cagcgagcct ttgatcgaca tcatcccgat ccagcgcagg gattccgacg
     6601 gcgcaatcat cacgcagttc gacatgggcg catgcgaaac gctcggcctg ctcaagatgg
     6661 actttctcgg gctgcgcaat ctcaccgtca tcgacgatgc actgcgcaac atcgagctca
     6721 acggcaaacc ggcgctggac ctcgagaacc tggaactgga cgacacgaag gcctaccaac
     6781 tgctcgccag cggggacacc ctcggagtgt tccagctcga cggtggcccg atgcgcgacc
     6841 tgctccgccg catggtgccg accaccttcg aggacatctc cgctgtactg gccctgtacc
     6901 gacccggccc gatgggcgcc aacgcgcaca acgactatgc cgaccggaaa aacggccgtc
     6961 aggaggtgcg gcccatccat ccagagctgg ccgagccact ggcggacatc ctggacgaga
     7021 ctttcgggct gatcgtctac caggaacagg tcatggcgat cgcccagcga gtggctggtt
     7081 actcactggg caaagccgac ctgctgcgcc gggcgatggg taagaagaaa aaggagatcc
     7141 tagacaagga gtacgagact ttttccggtg ggatgcgaga cgccggttac tcagcagcag
     7201 cgatcaagac gctgtgggac atcctgctcc cattctccga ctacgccttc aaccgcgcac
     7261 acaccgctgg ctacggcctg gtctcctact ggaccgctta tctgaaagcc aactatccat
     7321 ccgagtacat ggccgcactg ctcaccagcg taggtgacga caaagataaa gccgcggtgt
     7381 atctcgccga gtgccgcaag atgggcatca cggtgttgcc cccggacgtg aactcctccg
     7441 agcgtgactt caccgcggtc ggtgacgata tccgattcgg cctcggtgcc atccgcaacg
     7501 tcggtggcaa cgtcgtcgat gcgatcggcc gggcgcgcac tgagaagaag agctataccg
     7561 atttcgctga cttcctccgg aaggtcgatg cggtcgcgtg taatcggaaa gtcgtcgaat
     7621 cactgatcaa ggccggggcg ttcgactcgc tgggacattc tcgcaagggc ctctacctgg
     7681 tgcacggcga ggcaatcgat gtggtgatgg agtccaagcg agctgaggcg atcgggcagt
     7741 tcgacctttt cggaggtcag gacggtgccg ccgggctgcc gaacgcgttc gatgtgccag
     7801 tgcccgccga acggtgggac gccaagcacc agcttgcgct ggagcgggaa atgctcggcc
     7861 tctatgtctc cggtcacccg ctgcgcgggg tggagcacat cctggcccgc caggcggaca
     7921 ctccgatcgc atcgatcatc gacggcacgg tggctgatgg tgcccaggtg atcgtcggag
     7981 ggatcctcgc cagcgtgacc cgccgggtga accgcaacgg cgagccgtgg gcggccgccc
     8041 aactggagga cctcgccgcc ggcattgagg tgctgttttt ccccaagacc tactcggtag
     8101 tgggagtgaa cgtcgccgaa gacgggatcg tgctggtcaa ggcgcgagtg accaagcggg
     8161 atgaccggat ctctctgatc gccaacgacc tcgtggtgcc tgaactcgct acgccaggca
     8221 gttctgcggg ggaggccggt gccgggcagc ccatcaccgt gagcatgatc gcagcgcgtt
     8281 gctcgcccga gcgggtggcc caactcaagg acgtgttggc gcgccacccc ggtacccatg
     8341 aggtacggct gagcctggtc aacggcggcc gcaagcacct gctgaagctg gacgacgccc
     8401 tgcgggtgac tccgagcagc gcgctgatgg gtgatctcaa ggccctcctc ggccccagct
     8461 gcttgagctg acactccctt caatcgatag cgtgtgaatc gccgtcgaca cctgtgattc
     8521 cttcacatca gaagcctgac gaacgccact tgccgtaccc ctgcagccgg acgactattg
     8581 ctgcatagcg atgaacggcc agcaaacaag ggggattcaa tggacaacgg ttacgaggtg
     8641 tactgcatcg cggatccgtt gttctacgac tcgatgtccg ggtcgaaccg ggtggagtcc
     8701 ttcgatgccg ctcgacgtcc ggtacccgag ggctggcaac ggcggcctct cgacaattgg
     8761 gtggtcatga atccagtggg cgctacggtg cccccgcagg gttggaaagt tcacgcatcg
     8821 gcgtgtctcg acaacgcgga aagaattctg gaaactgtgt gggcttactg tgtcccccgc
     8881 ggaatcccat ttaaattcct ggctgcccga aacgtcgtcc acttgcaaaa cgcgaagtac
     8941 gccccccggg gctccagcgg caagttcgtc acaatctacc cgaccgacat tgacacactt
     9001 ggcatgatcc tgcacgacct gggcgaacgg ctggagggtg aaccgggtcc ctacattctc
     9061 agcgacctgc gctggaacga aggcccgctc tacgtccggt acggcggttt cgcgctgcgg
     9121 cattgcctgt cggcgcgagg tgaccgggtc ccggccatcg aggaccccac cggagcgctg
     9181 gtgccggacc gccgggacgc ggtgttctac acccctccct gggtggccct gccggacctg
     9241 ctcgttcccc agcttgccgc ccgcaacgcc accaacgtca aggaattgcc ttaccgcgtc
     9301 gagcaggtgc tgcacttctc caacggcggc ggcctctacg aggcgactga ccagcgaacc
     9361 ggcacccggg tggtgctcaa ggaagcccgg ccacacgccg gcctcgccgc cgacggcgcc
     9421 gatgcggtcc agcgactgca gcgtgaacgg gaagtcctcg acagcttggc cggcgtcgaa
     9481 ggggtccccg tggtccacga ccacttcagt ttgggcgaac accacttcct tgcactggaa
     9541 ttcatcgaag gaacgccgct caacaaggtc ttcgccaagc ggtacccgat gaacgatccc
     9601 gcagccgggc cagccgagtt cgccgcctac accgagtggg cgttgcggat gtgcgcccag
     9661 gtcgaaggga ttatcaaggc tatccacggg cgggggatca tccacggtga tctgcacctg
     9721 ttcaacgtca tcgttcggga cgacggccgg atcaccctgc tggacttcga ggtcgcgacg
     9781 aggatcgatg agacacgccg ccccaccctg ggcagccctg ccttcgccgc cccgaccgat
     9841 cggaccggat tcgacatcga ccggtactcg ctggcgtgcc tgaggttggc gctgttcctt
     9901 ccactgaccg ccattatccg gctcgacgcc ggaaagccga tggatttcgc cgaggtcatc
     9961 gccgagcact tcccggtgcc gcctgccttc ttggacgggg cggtgcgaac tatcaccggt
    10021 gccgtcggcg ctcaggggga tgcgtcccgg cggcgcgctc gaccccttcc ggcgctgccg
    10081 gacgggacga tcggatggct ggccgcccga aattcgattg tcgcggggat cttggccagt
    10141 gccacaccca aacgcgctga tcggctgttc cctggggaca tcgcacagtt cagcaccggt
    10201 ggtctcaata ttgctcacgg tgcggcgggt gtgctctatg cgctgtcggt cacccgggcg
    10261 ccgcagtacc tcgccgggga gcactggctg ctcgagcgcg ctgccgcagc ggcccgcgga
    10321 acgcggttag gcctgtacga cgggctgcac ggcgtggcgt atgtgctcgc agagctggga
    10381 taccgtcaag ccgcgctcga cctgatcgag ttctgcctca ccgagccatc cgagcaactc
    10441 ggcatggacc tttccggtgg tctcgcgggc atcgcgctga acttggccca cttcgcgggt
    10501 ctggccgggg aacctagcct gttcgaccac gcgctgcgcg tcgccgacat cgtcgccgat
    10561 cggctcggcg gaccggaatc tgtcggcacg atcagcggcg gagatcatcc ctatgccggg
    10621 ctgatgcaag gctcgtcggg ccctgcgctg atgttcctgc ggctctatga gcacaccggt
    10681 gatcgcgagt tcctcgaact gtccaggact gcgcttcgcc aggacctgcg tcgctgccaa
    10741 cggcgtgagg acggctcgat gatggtcaac gagggctggc gggccatgcc ctacctcgac
    10801 cgaggcagcg cggggattgg catgatcctc gacgagtacc tcacgcacca ggtcgatgac
    10861 gaattcgcgg aggccgcggc cgccattcgc aaggcggccc gagcccggtt ctacatccag
    10921 ccgggtctgt tcagcggccg ggccgggatg atcctctacc tcagccgggc ctacccaccg
    10981 gggcacgcgg tctgggacca ggaggtggcc gcacagatcc ggcgcctcgg ctggcacggc
    11041 gtcgactacc gaggccacct ggcctttccc ggtgaacagc tactacggct gtcgatggac
    11101 ttggcgagtg gcgcagcagg cgtcctgctc gcgctgggcg cggccgtgca cgagcacccc
    11161 gttggtcttc cgttcctctg cgagcccagg cagctcccgc cgcacgatgc ccccgtgccg
    11221 gcggtgctga tggggaggaa cgggttggta tccacttcag cattcggagg gaggtgaaca
    11281 gaatggcgct tctcgacctg caggccatgg agccggctgg cggttacgac gactgccacg
    11341 gtcacgaccg ttacgaccac tgctgcggca gtggcctcag cctgctgctc tgcggctgac
    11401 gcatcatcac caggtggtcc ggggcagccg gcgttgcccc ggaccacctg atgctttttc
    11461 accacagcaa aaccaacacc gtgcgactca ctggaccacg acgacgatgc ggaggccgcg
    11521 tgtacaacga tccggccagg gcaccggcgg ccccgcagaa tgtgccagcc gccgctccag
    11581 cggaccgttt gctgctgtcg acgggcctgc ggggtggatt gtggatctgg gtgctggcac
    11641 tggctacgct cgccaccgcg agcgcggaca tcctgctgcc taccgcgctc ggtcgcgctc
    11701 tcgacgcgct acccggtggc ggtgacatca gctgggccct gctgacgtgc gcggggctga
    11761 tcgcgatcat ggtcaccggg aaagtggtcg gcgatatcgc caccggaacg agcaacgccc
    11821 ggtgcacggc gtggctgcgt atgacgctcg tccggcacct cgtctcgatc ggacccgccg
    11881 cgacccgtcg cttcgaaccc ggagatctgg tgacccgggt aacccgcaac gccagcgagg
    11941 ccggccaggt tggcgtgacc actgtaatgg tcgtcgccgg cctgatcccg ccagtgggcg
    12001 gcattgtcgc tctaatggcg atcgactggt gggtgggtct cgccgcgctg gcgggtctag
    12061 tgacgatggc cgtcctggtg cgggtattcg tccggcacaa caccgag
//
LOCUS       DASVXZ010000668         3830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_882601, whole genome shotgun sequence.
ACCESSION   DASVXZ010000668 DASVXZ010000000
VERSION     DASVXZ010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_882601"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..1181)
                     /locus_tag="VF788_14140"
     CDS             complement(192..1181)
                     /locus_tag="VF788_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8935299.1"
                     /translation="MKALITGGAGFIGSHLAEHLLAGGHEVVVLDDLSTGSLENLSTI
                     SEHPHLRYVPGSVLDEALVDALVSQVDTIFHLAAAVGSFVIRDRTLASLRTNIHGTEH
                     VLAAAHRHQARVLIASSSEIYGKNTKIGLQEDDDRVVGSPLLHRWSYSEAKAVDESLT
                     RAYVTELGLHAVIVRLFNTVGPRQSGRYGMVIPRFVTQALAGEPLTIFGTGEQVRCFC
                     HVHDVVPALHALVEQPGAYGTAVNVGSSEQVSIAGLAHRVLALTGSASGTVQMTYEQG
                     IGPGYEDLQRRVPDCSRARELIGFRPTRTLDDILRSVIAERSRPALAVTAVLG"
     gene            complement(1178..2320)
                     /locus_tag="VF788_14145"
     CDS             complement(1178..2320)
                     /locus_tag="VF788_14145"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8935300.1"
                     /translation="MKVLHVITGLGVGGAELQLRSILQHTRHQSEVVTLYNPGPVAEM
                     ISGDGGRVRDLGMTGNTELPALGRLTRLIRDGGYHVVHTHLYRSCIYGRIAARLAGTP
                     VVVTTEHSIGETHLERRRMTLGVRALYLGTDLCSDATIAVSAAVAQRLIKWGVPARKI
                     EFIPNGLDFGRVAFDAAARNRIRDEFGLPRDAYVIGVLGRLDPIKRFDLVIKAAAPLL
                     DDQHRLLIVGDGQIRPDLEIEAARAGVADLVTFAGERHDVAAMLSSLDLFIASSDQET
                     FGLSVLEALANGIPALYTTCPALEGIETGRARQVPGEVAGLREEITAEVARGRRHREG
                     VPAIAERYGIESVTRRIDDLYDRLMARRNPARLTRQALPNPVGGNR"
     gene            complement(2317..3741)
                     /locus_tag="VF788_14150"
     CDS             complement(2317..3741)
                     /locus_tag="VF788_14150"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEX8935301.1"
                     /translation="MTTSLLAPNVGGQLRRPSPLVLLPMVLPLADAAGLATACLLVMV
                     FGGPAFGGPAFGRAASGWAAGAYACAVLVLLVADGQHRLRICRRVADQLPRTVAVAAM
                     PLLVVLPWVGLPDGLVLALSSIACLVVARVGTCTLLKAAHRRGWWHEPTLVIGAGATA
                     VRAVHLLRSQPELGLAPQGFLDSRPPQDPVDLPLLGEPAELAGVVTRHGIQRVIVCFP
                     EAPDGELVPLLRACRGLPVDVCVVPRCYELGAALPRGYLDELGDIPLIPLRRLGHGRL
                     GAATKAAFDVVVAAALLTVLAPVLLALAVAVRLDGGGPALFRQIRVTRSGATMELLKL
                     RSMVHHADSDTRWAVLPEQTTQLGRWQLGRWLRSSHLDELPQLVNVLRGEMSLVGPRP
                     ERPYFAAQFAQEIPRYGDRHRMRTGLTGWAQVNGLHGDTSITERIRFDNFYIEHWSPW
                     MDMVILARTLWPLPLCPVPPEGRS"
BASE COUNT          618 a         1345 c         1325 g          542 t
ORIGIN      
        1 gggtttctcg ttcgacccga gcatccgcgg caccgtgacc agcaacgcca ccgcgcccag
       61 gaacaacagg atgaggaaac cggagccggt caccacaccc cgcctcttgg ggggcgaagg
      121 ggtggtccca cctccgttcg agccggtccg ggggcgggca actgtgcgcc tgccgacgat
      181 gttggtgtta atcatccgag caccgctgtc acagccaggg ctggccggct tcgctcggcg
      241 atcactgacc ggaggatgtc gtccagcgtc cgggtcggcc ggaaaccgat cagctcccgt
      301 gcccgggagc aatccgggac gcgtcgctgc agatcctcat atcccgggcc gatgccctgc
      361 tcgtaggtca tctgcacggt gccgctggcc gagccggtca acgccagcac ccggtgcgcg
      421 agaccggcga tggacacctg ctcggagctg ccgacgttga cggcggtgcc gtaagccccc
      481 ggctgctcca ccagcgcgtg caacgccggc accacgtcgt gcacgtggca gaagcaccgc
      541 acctgctcgc ccgtgccgaa aatcgtcagc ggctcgcccg ccaaggcttg ggtcacgaac
      601 cgggggatga ccatgccgta gcgcccgctc tggcgggggc ccaccgtgtt gaacagccgc
      661 acgatcaccg cgtgcaggcc gagctcggtg acgtaggcgc gggtgaggct ctcgtcgacg
      721 gccttggcct ccgagtagga ccagcggtgc agcaggggcg agccgaccac ccggtcgtcg
      781 tcctcctgca acccgatctt ggtgttcttc ccgtagatct cgctgctgga ggcgatcagg
      841 acccgggctt gatggcgatg ggccgcggcg aggacatgct ccgtcccgtg gatgttcgtg
      901 cgcaggctgg ccaacgttcg atcccggatg acgaaggatc cgactgccgc ggcgaggtga
      961 aagatcgtgt ccacttggct gaccagcgcg tcgaccagtg cctcgtcgag caccgaaccc
     1021 ggtacgtaac gcaggtgggg gtgctcgctg atcgtcgaca ggttctccag cgatccggtg
     1081 gacaggtcgt ccagcacgac gacctcatga cccccagcca gcaggtgttc ggccaggtga
     1141 gagccgatga agccggctcc accggtgatc aatgccttca tcggttgcct cctactgggt
     1201 tgggcagcgc ttggcgggtg aggcgggcgg ggttgcggcg ggccatcagc cggtcgtaga
     1261 gatcgtcgat ccggcgggtg accgactcga tgccgtaccg ctcggcgatg gcgggcacgc
     1321 cctcgcgatg gcgacgcccc ctggccacct cggcggtgat ctcttcgcgc agcccggcta
     1381 cctcaccggg aacctggcgg gcgcgcccgg tctcgatgcc ctctaacgcc gggcaggtcg
     1441 tgtagagcgc gggtatgccg ttggccagcg cctcgagcac cgacagcccg aaggtctcct
     1501 ggtccgagga ggcgatgaac aggtccagcg acgacagcat ggccgccacg tcatgccgct
     1561 caccggcgaa ggtcaccaga tccgcgacgc ccgctcgggc cgcctcgatc tccagatcgg
     1621 gccggatctg cccgtcaccc acgatcagca accggtgctg atcgtcaagc agcggcgccg
     1681 cggccttgat caccaggtcg aaacgcttga tcgggtcgag ccggcccagc acgccgatga
     1741 cgtaggcgtc ccggggcagg ccgaactcat cgcggatcct gttccgtgcg gcagcgtcga
     1801 aggcgacccg gccgaagtcc aggccgttgg gaatgaactc gattttgcgt gcgggcacgc
     1861 cccacttgat cagccgctgc gccactgccg ctgacaccgc gatcgtggcg tccgagcaca
     1921 ggtccgtgcc cagatacagc gcgcgcactc cgagggtcat ccgccggcgt tccaggtgcg
     1981 tctcgccgat cgagtgctcg gtggtcacga ccacgggtgt gccggccaac cgggccgcga
     2041 tccggccgta gatgcacgag cggtacaggt gggtgtgcac cacgtggtac ccaccgtctc
     2101 gaatcagcct cgtcaggcgg cctaacgcgg gcagctcggt gttaccggtc atccccaaat
     2161 cgcggacccg cccaccgtcc ccggagatca tctcagcgac ggggccgggg ttgtagagcg
     2221 tcacgacctc ggactggtgc cgggtgtgct ggaggatcga gcgcagctgc agctcggcgc
     2281 ctcccacgcc caagccggtg atgacgtgca gaactttcac gatcttcctt ccggtggcac
     2341 cgggcatagg ggtaggggcc acagcgtccg ggccaagatc accatgtcca tccacggtga
     2401 ccagtgctcg atgtagaagt tgtcgaagcg gatccgttcg gtgatggagg tgtctccgtg
     2461 cagcccgttg acctgagccc acccggtcag cccggtccgc atccggtgcc ggtcgccgta
     2521 gcgcggtatc tcctgcgcga actgcgccgc gaaatacggc cgttccgggc ggggcccgac
     2581 tagggacatc tcgccacgca gcacgttgac gagctggggc agctcgtcaa ggtggctgct
     2641 gcgcagccat cggcccagct gccatcgacc cagctgagtg gtctgctcag ggagcaccgc
     2701 ccagcgggtg tccgagtcgg cgtgatgcac catcgagcgc agcttgagca gctccatcgt
     2761 cgcgccggat cgggtcaccc ggatctgccg gaacagggcc gggccgccac cgtcgagccg
     2821 gacggcgacc gcgagcgcga gcagcacggg cgcgagcacg gtgagcagtg ccgcggcgac
     2881 caccacgtcg aaggcggcct tggtagcggc gccgagccgg ccgtgcccga ggcggcgcag
     2941 cgggatcagc gggatgtcac cgagctcgtc gaggtagccg cggggcagcg cggctcccag
     3001 ctcgtagcac cgcgggacca cgcagacgtc gaccgggagc ccccggcagg cccgcaacag
     3061 cggcaccagc tcgccatccg gggcctccgg gaagcagacg atgacgcgct ggatcccgtg
     3121 ccgcgtgacc acgccggcca gctccgccgg ctcgccgagc agcggcagat cgaccgggtc
     3181 ctgcggcggc cggctgtcga ggaacccctg gggtgccagc ccgagctccg gttggctgcg
     3241 cagcaggtgc acggcccgca ccgcggtggc gccggccccg atcaccagcg ttggttcgtg
     3301 ccaccacccg cgccggtgtg cggctttcaa caacgtgcag gtcccgacgc gggctacgac
     3361 caggcacgcg atggagctca acgccagcac cagcccgtcg ggtaagccca cccatggcag
     3421 caccacgagc agcggcatcg ccgccaccgc cacggtccgc ggtagctgat cagcgacccg
     3481 ccggcagatc ctcagccggt gctgcccatc ggccaccagc agcaccagca ccgcgcaggc
     3541 atacgcgccg gcggcccatc ccgaggcggc ccgcccgaac gccggtcccc cgaacgctgg
     3601 tcccccgaag accatgacga gcaggcaggc cgtggcgagg ccggcggcat cagccaaggg
     3661 aaggaccatc gggagcagga ccagcggtga aggccgccgc aactgcccgc caacgttcgg
     3721 cgcgagcagt gaggtggtca tccgcgggct cccacggttg gacgtggcgc gggaatggcg
     3781 gtggtcagtg cgcgggccaa cgtccgcgcc gcgtagtcag cgccgcagac
//
LOCUS       DASVXZ010000669         4581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1599034, whole genome shotgun sequence.
ACCESSION   DASVXZ010000669 DASVXZ010000000
VERSION     DASVXZ010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4581
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1599034"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VF788_14155"
     CDS             <1..282
                     /locus_tag="VF788_14155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX8935302.1"
                     /translation="DDWTVHFPGILHRPGYERRAVALDDRGERLLVREVVGGMSRLFI
                     YTPADDSLVSIAGAPGTISSPACWTGNFIRCRFSAPAQPPTLATVRLTP"
     gene            889..1452
                     /locus_tag="VF788_14160"
     CDS             889..1452
                     /locus_tag="VF788_14160"
                     /inference="COORDINATES: protein motif:HMM:NF022747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3105 domain-containing protein"
                     /protein_id="HEX8935303.1"
                     /translation="MVVTIMIAALLIARNCNQAALNNQSIPTGKQIPNGLIPAGTVIY
                     PELNRYHVLGKVLYDHSPPVGGNHSPVWLNCGIYDSPVANENAVHSLEHGSVWITYLP
                     VLPQAEVDALRVLVKASYQGTERYVILSPYPGQSAPVVASAWGYQLALQEPTDPRLKS
                     FINYFRHGPQTLEPSAHCTGGTGNPIS"
     gene            complement(1486..2682)
                     /locus_tag="VF788_14165"
     CDS             complement(1486..2682)
                     /locus_tag="VF788_14165"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX8935304.1"
                     /translation="MKRDALLLPALYLLNCLLFSAWLQLNDVATKPWLLLVWLYGLAA
                     LIPLAWRDRAPVTVFTIQCILTVAAWPFMPFYTPVVGIPVSLYAVSVHRSRKISLLAL
                     LASFIPNALAAAVAFRVYSIPAQQLRSFVPNDILLVIAAAGAWGAGRVTQASQRHVRR
                     LEREQETAREMEVLAAERRRIARELHDIVSHAVTVMVLQAAGAARVANADLSQVKRSL
                     THIETAGKQVMAELRQLLRVLQAGDLPGHALSTSAFRPQPGLADLTGLLTSFQDTGMP
                     VTVHIEGATRSSLEPSVDLAAYRIVQEGLTNILKHAGKDSDPRLRLVWGAQSLLIQIN
                     NDTNPAEAQQGLALSIGRGLVGLREQAHAVGGCLHTEHHNGGYRLTATLPLADSVAPI
                     LVDNHG"
     gene            complement(3072..>4581)
                     /locus_tag="VF788_14170"
     CDS             complement(3072..>4581)
                     /locus_tag="VF788_14170"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8935305.1"
                     /translation="ATIEPLRDSLITSVVAASLIRALLGEQQASGSSVSQATVQVETV
                     RALLSGLLRNTRQMLSVTIAAIGGLAVLSPLLALVVTAFVVLALAGFAVLLRTLVVRY
                     RAVVLYGEGIGVVAAPVVEGIRDVIAYAAEARAAREVGEAIDTEAAALRAFARASVWR
                     VPVVTVGAHLPVFALLALAPWLVTHQHLTIGQIVGGVVYLFSGLQPAIQILVNGGGTI
                     VVSLAVVLARLAEISAAPPAPTADPPMLLPADRDAALDVEGVTFAYSSHAEPIVRDLT
                     LHIPAGMHLAVVGPSGVGKSTLANLLARLAAPQRGQLRLGGVALDQIDEIHLRKVTAL
                     IPQEAYVFAGTVRDNMTYLQPRASVTEIDHAVAAVGLKELITRLGGYDAEIPPGGGSL
                     SPGERQLIALARSYLSPAQIVVLDEATCHLDPVAEAQAENAFAERHGTLIVIAHRISS
                     AMRADRILLMDGADAVLGSHHSLLATNILYADLVGYWDRTIMPLVEIGEQYE"
BASE COUNT          898 a         1337 c         1453 g          893 t
ORIGIN      
        1 gacgattgga ctgtccattt ccctgggatc ttgcatcgac cgggctatga gcgccgggcg
       61 gtggctttgg atgaccgtgg cgaacggcta ttggtgcgcg aggtggtggg ggggatgtct
      121 cgactgttca tctacacccc agcggacgac tctctcgtct ctatcgctgg tgcgcccggc
      181 acaatatcgt ctcctgcctg ctggactgga aattttattc ggtgtcgatt ctcggctcca
      241 gcccagcctc ccacgctggc caccgtgcgg ctcacaccgt agtcacggtg tcattacgcc
      301 gcaggagggg gcggcgaaaa ctaagagtta gctcagcaga agctaaggta atctgtaggt
      361 agttctttta ttctttatag gtaaggacga tggccgtatg gcccatcact agccacgcca
      421 gtccaggacc ttccgcacag cggaagcaga aacagaactg ataacaatgg atggagatga
      481 atatcatgga gttcagtagc tttgacctgg tgagatcgtt gtacgcactg cccgagtcgt
      541 ccccggtcga gattgatggg atccagttcg ccaacacatg tagccagcag tgcgtctcac
      601 tcagcgtgaa tgtgatccag actgtgtgtg cgatctccgc tacttgctgc tagagccaaa
      661 cagtttcaag taatgtcacg caacagttaa cgtaggcgac tgggcatgga gacacttttt
      721 atccgtctcc atgcccagcc gtctactcac gcttaaccaa tcacactcaa caaatcaagg
      781 atagattggg cgatcatggt aaggcgtgcg gacgaacatc tggaaaaagg cgtagacatg
      841 gcaccagcgg tttcgaggag gaagctgcgt tggtggtggc ctgtgatcat ggttgtcact
      901 atcatgattg ctgcgctgct tattgccaga aactgtaacc aagcagcatt gaacaatcag
      961 tcgatcccga cgggcaaaca aattccaaac ggcttgatac cggctgggac ggtgatctac
     1021 ccggagctga accgctacca cgtcctcggg aaggttctct atgatcacag tccgcccgtt
     1081 ggtggtaatc actcgcctgt gtggctcaac tgcgggatct acgacagtcc tgtcgctaat
     1141 gaaaacgccg tacattcttt agagcacggt tcggtatgga tcacctacct ccccgtgttg
     1201 cctcaagccg aagtggacgc ccttcgagtg ctggtgaaag cgagctacca ggggaccgag
     1261 cgctacgtca tcctcagtcc ctatccaggt caaagtgcgc cggttgtcgc ctctgcatgg
     1321 ggataccagc tggcactgca ggagcccacc gatccgcgtt tgaaaagctt catcaattac
     1381 ttccgccacg ggccccaaac cttggaaccc agcgcccact gcaccggcgg cactggaaat
     1441 cccatcagct gaaccctcga tcggcgaccg cactgaacgt ggtccttacc cgtgattgtc
     1501 aacgagtatc ggcgcaacgg agtccgcaag gggaagggtt gcggtcagtc ggtagccgcc
     1561 gttgtgatgt tctgtgtgca ggcacccacc gactgcgtgg gcctgctcgc gcaggcccac
     1621 caggccgcga ccgatggata gcgccagccc ctgctgggcc tccgcagggt tcgtgtcgtt
     1681 gttgatctgg atgagcagac tctgggcacc ccaaactagc cgcaggcgtg ggtcggagtc
     1741 cttgccggcg tgtttcagga tgttggtcaa gccctcctgc acgatccggt atgcggccaa
     1801 gtccacactg ggttccaggc tgctgcgtgt tgccccctcg atgtggacgg tgactggcat
     1861 tccggtgtcc tggaatgacg tgagcaatcc ggtcagatcc gccagtccgg gttgcggccg
     1921 gaatgcgcta gtggacaggg cgtggccagg gagatcgccg gcctggagca ctcggaggag
     1981 ttgccgcagc tcagccatca cttgttttcc agcggtctcg atgtgcgtta atgaccgctt
     2041 gacctggctg aggtcagcgt tggccactcg ggctgctccg gcggcctgta agaccatcac
     2101 ggtcactgcg tgcgagacga tgtcgtgtag ttctcgagcg attcttctcc gctcggcggc
     2161 cagcacttcc atttccctgg cggtctcctg ctcgcgttcc aagcgtcgga catgccgctg
     2221 gctggcttgc gtgacgcggc ccgcgcccca ggctccggca gctgcgatga caaggagtat
     2281 gtcattgggc acgaacgacc gaagttgttg agcggggatt gagtaaactc gaaatgctac
     2341 ggcggcggcg agcgcgttgg ggatgaaaga tgccagcaac gccagcaggg atatcttcct
     2401 gctgcggtgt acagagaccg cgtacaggga gactggaatt cctaccacgg gcgtgtaaaa
     2461 aggcataaac ggccacgcag ccacggtgag tatgcattga atggtgaata cagtcaccgg
     2521 ggccctgtct cgccacgcca agggtatgag cgcagccagc ccatatagcc atacgaggag
     2581 cagccatggc ttggtggcca cgtcatttag ctgcagccat gccgagaaga gcaggcagtt
     2641 gaggagatag agcgccggga gcaggagagc atcccgtttc acagatggtg gtacctggat
     2701 actggtcggt acccaaccca gagatctcat gaggattcct cgctgcggca ggtattcagc
     2761 ggtacagtcc aactcccgca ggctggttcg gctgcacgaa cggggtatcg gggcagagac
     2821 caggcttctc ccccctgcat ggtggagggg gatccacggt agaactcatc tgattgctcg
     2881 tcgacgtggg agcagctgcc gccgcgggtg cgcctacaag gatgagagca gcgggcagga
     2941 caagcaatgt aacggccctt ttggtgcgtg cgctcgatga gtgcccatgg acgcttctcg
     3001 attccccgct ttcaagcaat gtattgatac tgatcatcat gttccctcct cagtgctgcg
     3061 cgcaccattg atcattcgta ttgttcgcct atctcgacga gaggcataat ggtgcggtcc
     3121 caatagccga cgaggtcggc ataaaggatg ttggttgcaa gtaagctgtg gtggctgccg
     3181 aggacggcgt cggctccgtc catgagcagg atgcggtcag cgcgcattgc tgagctgatc
     3241 cggtgggcga tgacgatgag agtgccgtgg cgttcggcaa aggcgttctc ggcctgggcc
     3301 tcggcaaccg ggtcgaggtg gcaggtggcc tcgtcgagga ccacaatctg agccggggaa
     3361 aggtagctcc gggctagggc gatgagttgc cgttccccgg gggacaggct ccctccgccg
     3421 ggtgggatct cagcgtcgta gccgcccagg cgtgtgatca gctccttgag gccgacggca
     3481 gccaccgcgt ggtcgatctc cgtcacggac gcccgcggtt gcaggtatgt catgttgtct
     3541 cggacggttc cagcgaagac gtatgcctct tggggaatga gcgctgtcac cttccgcagg
     3601 tgaatctcgt cgatctggtc cagggccacg ccgccaagcc tcagctgacc gcgctgcggc
     3661 gcggcaagtc tggccagcag attggcgagt gtggacttac ccaccccgct tgggcccacc
     3721 accgcgaggt gcattcccgc ggggatgtgc agggtgaggt cccgcacgat gggctcggcg
     3781 tgcgaggagt acgcaaatgt cacgccctcg acatcgagtg cagcgtcgcg atccgcggga
     3841 agcagcatcg gtggatcagc agtgggtgcg ggcggcgcgg cgctgatctc ggccagccga
     3901 gcgaggacca ccgcgaggct cacgacgatt gtgcctccgc cgtttaccag gatctggata
     3961 gcgggctgca gcccgctgaa taagtagacg acaccgccga cgatctgccc gatggtcagg
     4021 tgctggtggg taaccagcca tggtgccagt gccagcaggg cgaacacggg taggtgggcg
     4081 ccgaccgtca ccaccggaac ccgccacact gatgctctgg cgaaggcgcg caaggctgcg
     4141 gcctcggtat cgatggcctc acctacctcc cgtgctgccc gagcttcggc tgcgtaggcg
     4201 atgacatcgc ggataccttc gaccactggg gcggcgacca caccgattcc ttccccatag
     4261 agcacgaccg cccggtagcg caccaccagg gtgcgaagca acacggcaaa cccggccagg
     4321 gccagcacca cgaacgcggt gacgacgagg gcgagcagcg gggagagcac ggccaacccg
     4381 ccgatggctg cgatggtcac ggagagcatc tggcgggtgt ttcgcagcag gcccgacaag
     4441 agcgcccgca ccgtttccac ctgcacggtg gcctgcgaga cgctcgatcc gctcgcttgc
     4501 tgctcgccga gcagcgcacg gataagcgag gcagcgacaa cgctggtgat caaggagtcg
     4561 cgcagcggct cgatggtcgc a
//
LOCUS       DASVXZ010000670         4114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1240942, whole genome shotgun sequence.
ACCESSION   DASVXZ010000670 DASVXZ010000000
VERSION     DASVXZ010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4114
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240942"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..825)
                     /locus_tag="VF788_14175"
     CDS             complement(247..825)
                     /locus_tag="VF788_14175"
                     /inference="COORDINATES: protein motif:HMM:NF023502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3558 domain-containing protein"
                     /protein_id="HEX8935306.1"
                     /translation="MRAHLGVLAMAAVLAGCSSGSGQPDDAEAISGAFETPSARVPND
                     PIPAVRNPKNLIAMQPCLLLTPVQLDTNRIDQAGQPKSVLGNTGCEWSDKAHTRQFAV
                     YADIGNDVLRNVYSQREDIPVFELTEVAGLPAIRTKDDVDGTSCYFRIAVADMQTLIV
                     RFTSLRQTREDPCPPAKQFAQTVIGNLPPLTG"
     gene            complement(992..1633)
                     /locus_tag="VF788_14180"
     CDS             complement(992..1633)
                     /locus_tag="VF788_14180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935307.1"
                     /translation="MSELWPDALFASDGTEPSAPVRDRSGEGREDAPMFPSLPLPPIP
                     PLRMTREEIAAALREDSGALAGHDPVAMPASPPTTPEPRAAAPSQTPQTGVTATQPVP
                     PAAQPAGPRSASGTPRLTRPVISAAPVPNQGLSRGFSPLRYARRVVPGGTRPLGQRRD
                     SRRRAGGRNRGLQTRTRSDGGASAFFTIMLITFAVLLYFIVSGLVAAFARLIP"
     gene            complement(1677..>4114)
                     /gene="topA"
                     /locus_tag="VF788_14185"
     CDS             complement(1677..>4114)
                     /gene="topA"
                     /locus_tag="VF788_14185"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEX8935308.1"
                     /translation="ESSRGHIRDLPRGAADVPAKYKGEAIAWHLMETLKPRVPVRRMV
                     FHEITEPAIRAAAEHPRDLDKDLVDAQETRRILDRLYGYEVSPVLWRKVMPKLSAGRV
                     QSVATRIIVRRERERMSFVSASYWDLAVTVDAGPDATPRTFGARLVDVDGHRVATGRD
                     FGADGTLKRADADLLVIDVAYAGRLAEALAAAPLTVTRVEEKPYTRRPYPPFMTSTLQ
                     QEAGRKLRFSAERTMRTAQRLYENGYITYMRTDSTMLSESAIAAARAQARELYGEQFL
                     HDGPRQYTRKVKNAQEAHEAIRPAGETFATPGQLAGALDTDEFRLYELVWQRTVASQM
                     ADARGTTMSVRITGHASTSEECTFAASGRTITFPGFLKAYVETVDEQAGGEADDAERR
                     LPQLTEGQQITATELVPEGHSTTAPPRYTEASLVKALEELGIGRPSTYASIINTIQDR
                     GYVWKRGSALVPSWVAFAVVGLLEEHFGCLVDYDFTAAMEDELDSIASGAQHRTDWLT
                     GFYFGSEQGGTTSVARVGGLKKLVGVNLEEIDAREVNSIPLFTDDAGHDVVVRVGRYG
                     PYLERIVDGAQQRANLPDDLPPDELTAEIAEKLFATPVEGRSLGTDPVTGHEIVAKEG
                     RYGPYVTEVLPEDSDSTKDSTKASKKVKPRTGSLFKSMSLETVGLDDALRLLSLPRLV
                     GTDPDTGQEITAQNGRYGPYLKRGTDSRSLADEEQIFAVTLDEARKIYAEPKRRGRQA
                     GAKPPLRELAPDPVTGKPMIVKEGRFGPYVTDGEGVNASLRKGDSVEALTDERAAELL
                     AEKRAKARSSASA"
BASE COUNT          645 a         1358 c         1398 g          713 t
ORIGIN      
        1 tccacgggtc agcggtgatt acgccctacc gttatatccg aatcgagtca agcagatgag
       61 cgaggcgctg cgcgagttga gagcgtgccg ctggagccca cgtgtaccaa cggccgcggc
      121 cgacaccacg tttctgctcg attgtgcagt cgccgcgccc tgctcactca tcgtggtaat
      181 cctctcacgt gccgtcagcg gcacgcgcag agtgtgccac agggccatct gcgatggccc
      241 tcgtcgttac cccgtcagtg gtggcaggtt gccgatgacg gtttgggcga actgttttgc
      301 cggagggcac ggatcttcgc gagtctgccg caaggacgtg aaccggacaa tcagcgtctg
      361 catgtccgcg accgcgatcc ggaaatagca gctggtgcca tccacatcat ccttggtgcg
      421 gatcgctggc agccccgcca cctcggtcag ctcgaaaacc ggaatgtctt ctcgctggct
      481 gtagacattg cgcagcacgt cgttgccgat atccgcgtag accgcgaact ggcgggtgtg
      541 tgccttgtcg ctccactcgc atccggtgtt gccgaggaca gatttgggct gaccggcctg
      601 gtcgatccga ttggtatcga gctgcaccgg tgtgagcagc aagcatggct gcatggcgat
      661 caggttcttg ggatttcgca ccgccgggat gggatcattc ggcacccgag ccgacggcgt
      721 ctcgaacgcc cccgagatgg cctcggcatc gtcgggctgc ccgctgcccg acgaacaacc
      781 ggccagcaca gcagccattg ccagcactcc caggtgggca cgcatcacat cacagcttcc
      841 ccgaccccga cgcaggtgag taacgccgcg gagtctgcca tggagccgca gagagccctc
      901 ttgggggccc accgtcctcg gtaggtggct cagatctgag gtcgtccagt tcgacatcag
      961 gggttgtttg ggcgaattcg gaccgctggc gctaggggat gagcctggcg aatgcggcca
     1021 cgaggccgga gacgatgaag taaagcagca ccgcgaaagt aatgagcatg atggtgaaga
     1081 aggcactggc gcctccgtcg gatcgggtgc gcgtctgcag accacggtta cggccgccgg
     1141 cccgacgacg ggagtcacgg cgctgcccta gcgggcgggt ccccccgggg accacccgcc
     1201 gggcgtaacg cagcggactg aatccgcgcg agagcccctg attgggcacg ggcgccgccg
     1261 agatgaccgg tcgggtgagg cgaggggtcc cgctggccga ccgtggccca gccggctgcg
     1321 cagcaggcgg cacgggctgc gttgcggtga cacctgtctg cggtgtctgg gaaggcgcag
     1381 cggcgcgggg ttcgggcgta gtcggcgggg aggcgggcat cgcgaccggg tcatgtcctg
     1441 ccaacgcgcc ggaatcttct ctgagtgcgg cggcgatctc ttcccgcgtc atccggagtg
     1501 ggggaatcgg gggcaggggc agcgacggaa acatcggcgc gtcttctcgg ccctcgcccg
     1561 atcggtcacg caccggcgcc gacggctcag tgccatctga tgcgaacaag gcatccggcc
     1621 acaactcact catgtgacca tggtcgcacg tcggtgagta acagtgttac gacccgttac
     1681 gcactcgctg acgagcgcgc cttggcccgc ttctcggcga gcaattcagc ggcccgctca
     1741 tcggtgaggg cctcgacgct gtcgcccttg cgcagggatg cgttgacacc ttctccgtcg
     1801 gtgacatagg gcccgaagcg gccctccttg acgatcatcg gcttcccggt caccgggtct
     1861 ggggccagct ctcgcagcgg cggcttggcg ccggcttggc ggccccgccg tttcggctca
     1921 gcgtagatct tgcgcgcctc atcgagggtg acggcgaaga tctgctcctc atcagcgagc
     1981 gaccgcgagt ccgttcccct cttcaagtag gggccatagc gcccgttctg ggctgtgatc
     2041 tcctggccgg tgtccggatc ggtgcccacc agccggggca aggagagcaa ccgcagtgcg
     2101 tcgtccaggc ccaccgtctc caggctcatc gatttgaaca gcgagccggt ccgcggcttg
     2161 accttcttag aggccttcgt ggagtccttc gtggagtcac tgtcctcggg aagcacctcg
     2221 gtgacgtagg gcccgtaccg tccttccttg gcgacgatct catgcccggt caccggatcg
     2281 gtacccagcg accggccctc caccggggtg gcgaagagct tctcggcgat ctccgcggtc
     2341 agctcgtcag gcggcaggtc atccggcagg ttggcccgct gctgggctcc gtcgacgatc
     2401 ctttccaggt agggaccata gcgcccgacc cggaccacca cgtcgtgccc ggcgtcgtcg
     2461 gtgaacagcg ggatggagtt gacctcgcgc gcgtcgatct cctccaggtt cacgcccacc
     2521 agcttcttga gcccaccaac gcgggccact gacgtggtgc cgccctgctc cgagccgaag
     2581 tagaacccgg taagccagtc ggtgcggtgc tgggctcccg aggcgatgga gtccagctcg
     2641 tcctccatcg ctgcggtgaa gtcgtagtcg accaggcaac cgaagtgctc ttcgagtagc
     2701 ccgacgacgg caaaggccac ccacgaggga accagcgccg acccacgctt ccacacatac
     2761 ccgcggtcct ggatggtgtt gatgatcgag gcgtaggtag acgggcggcc gatgcccagc
     2821 tcttcgagtg ccttgaccag gctcgcctcg gtgtagcggg gcggggcggt ggtggagtgc
     2881 ccctccggca ccagctcggt ggcggtgatc tgctggccct cggtgagctg gggaagccgg
     2941 cgctccgcgt cgtcggcctc gccaccggcc tgctcgtcca ccgtctcgac ataggccttg
     3001 aggaacccgg ggaaggtgat ggtgcgcccg gacgccgcga acgtgcactc ctcggacgtc
     3061 gaggcatgcc cggtgatccg cacgctcatc gtggtgccac gggcatcagc catctgggaa
     3121 gctacggtcc gttgccagac cagctcgtag agccggaact cgtcggtgtc cagcgctccg
     3181 gccagctgac ctggtgtggc aaaggtctca ccggcgggcc ggatcgcctc gtgcgcctcc
     3241 tgggcgtttt taaccttgcg ggtgtactgc cgcggaccat cgtgcaggaa ctgctcaccg
     3301 tacagttccc gggcttgcgc ccgggccgcc gcgatggccg actccgacag catcgtggag
     3361 tcggtccgca tgtaggtgat gtagccgttc tcgtagagcc gctgcgcggt gcgcatcgtg
     3421 cgctccgcgg agaagcgcag ctttcgaccg gcctcctgct gcaaggtcga cgtcatgaac
     3481 ggcgggtaag gccgccgggt gtagggcttc tcctcgaccc gggtgacggt gagcggggcc
     3541 gcggcgagcg cctcggcaag gcgaccggcg taggccacgt cgatgaccag taggtcggcg
     3601 tcggcacgtt tgagcgttcc gtcggcgccg aagtcccgtc cggtggcgac ccggtggccg
     3661 tcgacgtcaa ccagccgggc cccaaacgtg cggggggtgg catccgggcc cgcatcaaca
     3721 gtaaccgcga gatcccagta ggacgcggac acgaacgaca ttcgctcccg ctcacgccgc
     3781 acgatgatgc gggtggccac cgactgcacc cggccggcgg acagcttggg catcaccttg
     3841 cgccacaaca ccggggagac ctcgtagccg tagagccggt ccaggatgcg ccgggtctcc
     3901 tgcgcgtcga ccaggtcctt atccaggtcg cgggggtgtt ccgcggcggc gcggatggcc
     3961 ggctcggtga tctcgtggaa gaccattcgg cgcaccggca ccctgggctt aagggtttcc
     4021 atcagatgcc acgcgatggc ctcacccttg tacttggcgg gcacgtcggc cgcgcccctg
     4081 ggcaggtccc ggatatgtcc ccgtgaggac tcca
//
LOCUS       DASVXZ010000671         1953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_165612, whole genome shotgun sequence.
ACCESSION   DASVXZ010000671 DASVXZ010000000
VERSION     DASVXZ010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165612"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            385..1464
                     /locus_tag="VF788_14190"
     CDS             385..1464
                     /locus_tag="VF788_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005153104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8935309.1"
                     /translation="MPVASSTLHRLLAVLAAISVLTFGSACGGRTNSADGPPGPASTL
                     RLGYFANVTHAAAIIGVNRGLIAKELGATKLETQIFDAGPAAVEALFGGSLDAVYIGP
                     NPAINAFARSDGKAIRIVAGATSGGAQLVVRQGINSARDLRGATLASPELGNTQDVAL
                     RAWLSKQGLRNSVQGGGDVTITPTKNADTLQLIKSGKLDGAWVPEPWASRLVLEAGSK
                     VLVNERDLWPGGQFVTTNLIVRTEFLERHPQTVEALLRGHVDAVQWANQNPAEAKAVV
                     NDGINALTGKPLKPEVVDRAWQDLTVTEDPIAASLQRSAENAVAAGVATNQADLHGIY
                     ELSILNRILTQRSLPSVSASGLGKD"
     gene            1470..>1953
                     /locus_tag="VF788_14195"
     CDS             1470..>1953
                     /locus_tag="VF788_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8935310.1"
                     /translation="MAHPTLSSLAADGQVAFLRSGSTPSIRVAQLAQVFERDRPPVLD
                     RIDLEVMPGEFVCLLGASGCGKSTLLSLIAGLGAPTSGSVEVTVGRPALMFQEPALLP
                     WLTAAGNVELALRARGVRRRERHAETERLLTLVNLAGQGRKRVHELSGGMRQRVALAR
                     A"
BASE COUNT          322 a          679 c          649 g          303 t
ORIGIN      
        1 tgcccgatca gccacctgcc ctccgagttg cttatccagc cgaaccctcg accggatcac
       61 cacatgctag cccccgcccc ctgccgctca ggggctcacc gaggtgaccc acggtctgct
      121 gtggcgaggg gtccatgtcc accatgtggt gaatacggca gccggcatca ctcgttcgtg
      181 tagcgtgagc gtcgtgcctg ctctgtcact caagctcgtg gcgcgccgcc acgtcgacta
      241 cgggcgcacc cgcagcatga tctgtatgac ggactgaccc tgcccgatcc tccatcagcc
      301 gggcgtgtgg tcgtgccgtc ccggcgctga agatcgctcc tacggtacct cgcgcgccct
      361 caaagcccag gacgcgcgcc cgtcatgcca gttgccagct cgaccctgca ccgtctcctc
      421 gcggttctcg ccgcgatctc cgtcctgacg ttcggtagtg catgcggcgg caggacgaac
      481 agcgccgacg gaccaccggg gccggcatcg acgttgcgtc tgggttattt cgccaatgtc
      541 acccacgccg cggccatcat cggcgtcaac cggggcctca tcgccaaaga actcggcgcc
      601 accaaattgg aaacacagat tttcgatgcc ggtcctgcgg cggtcgaggc actgttcggc
      661 ggcagcctcg acgcggtgta catcgggccc aatccggcga tcaacgcctt cgccaggagc
      721 gatggcaagg ccatcaggat cgtcgccgga gcgacctccg gcggcgcgca gctggtcgtc
      781 cggcagggca tcaactctgc gcgggatctg cggggcgcga cgctggccag ccccgagctc
      841 ggtaacacgc aggacgtggc gctgcgtgcc tggctgagca agcagggcct gcgcaacagc
      901 gtgcagggcg ggggggacgt caccatcacg cccaccaaga acgccgacac cctccagctg
      961 atcaagtcgg gcaagctcga cggtgcgtgg gtgccagagc catgggcgtc caggctggtc
     1021 ctggaagccg gttccaaggt gctggtcaac gagcgcgacc tgtggcccgg tggccagttc
     1081 gtcaccacga acctcatcgt ccgcaccgag ttcctcgaac ggcacccgca gacggtcgag
     1141 gccttactgc ggggacacgt cgacgcggtg cagtgggcga accagaatcc ggccgaggcc
     1201 aaggccgtcg tgaacgacgg catcaatgcc ctcaccggca aacctttgaa accggaagtg
     1261 gtggaccgcg cctggcagga cttgacggtg actgaggacc ccatcgcggc gtccctgcaa
     1321 cgcagcgccg agaacgcggt ggccgctggg gtggccacca accaggccga tctgcacggc
     1381 atctacgagc tgtcgatcct caaccggatc ctgacccaac ggagcctgcc gagcgtgtcg
     1441 gccagcgggc tcgggaagga ctagcgaaca tggcacatcc gactctcagc tcgctggccg
     1501 cggacgggca agtggcattc ttgcgctcgg ggtcaacccc cagcatccgg gtcgcccaac
     1561 tcgcgcaggt cttcgagcgc gaccggccac ccgtgctgga ccggatcgac ctggaggtca
     1621 tgcccggtga gttcgtgtgc ctgctgggtg cgtccgggtg cggaaaatcc accctgctct
     1681 cgctcatcgc cgggcttggc gcacccacat ccggcagtgt cgaggtcacc gtgggccgcc
     1741 cagcgctgat gttccaggag ccggcactgc tgccgtggct gaccgccgcc ggcaacgtcg
     1801 agcttgccct cagggcacgg ggggtgcggc ggcgcgagcg acacgccgag accgaacggt
     1861 tgctcacgct ggtgaacctg gccgggcagg ggcgcaagcg ggttcatgag ctctccggtg
     1921 ggatgcggca gcgggtggcg ctggcccggg cgc
//
LOCUS       DASVXZ010000672         1596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_434611, whole genome shotgun sequence.
ACCESSION   DASVXZ010000672 DASVXZ010000000
VERSION     DASVXZ010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434611"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..1493
                     /locus_tag="VF788_14200"
     CDS             330..1493
                     /locus_tag="VF788_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8935311.1"
                     /translation="MAVIVGMDPHKRSATIEVVDERGQKMAVGRYGTDNAGYAEMLRA
                     CRSFPQRVWAVEGCNGIGRHLAHRLVHDGEVVLDVPAKLSAQVRVFASGNGRKSDPVD
                     AHSVALAALRTPDLVRVEVDPDLVVMGMLADRRDELGRARTQTVNRLHRVLLELFPGG
                     AKKFLSAAQARALVATIKPRDLVGKTRRRLAVELISELESTDKKSKAVDKDLHELVTA
                     RGSTLMDLHGIGPSGAARLLADVGDIRRFRDRNRFASWNGTAPLDASSGAQQRHRLSR
                     AGNRRINRTLHIMAVVQLRNATEGRAYFDAKKAAGKTSMEAMRALKRRLSNVVHARML
                     ADQKRREAAGPGGHSGMTLQSSVTGLTPDTGPSNKPLPGPATTQPRPALPQGS"
BASE COUNT          288 a          528 c          521 g          259 t
ORIGIN      
        1 acgcatagtc atcactcgcc cagtgtgcgg ccaacaggcg gccagtgcgc ccgattttag
       61 gaccactcga cacggcctgc ggcactcgcg cggtcagcgg ctacttaaga ctggcgggag
      121 gaccggtgcc cggccaggct cctggtccca ggtgctcggt gagacgctcc ctcgttgcgg
      181 ctgcccgccg gtgtcatggg tgtggctctc tcatggcttg cgtctcgccg agcgctgctg
      241 cgaggagagg ctcaaaaggg gtctgttctg ctcgaagtag cggtgccctc cttgctgata
      301 aatgtcccta tcagtcaagg aggacgccgg tggcagtgat cgtggggatg gacccgcaca
      361 agcgttcagc cacgatcgag gttgtggacg aacgtggtca gaaaatggca gtaggccggt
      421 atggcaccga taatgctggc tacgccgaga tgctgcgggc ctgccgcagc ttcccgcagc
      481 gggtatgggc ggtggagggc tgcaacggca tcggtcgcca cctcgcgcat cggctggtgc
      541 atgacggcga ggtcgtcctc gatgtaccgg cgaagttgtc tgcgcaggtg cgcgtgttcg
      601 ccagcggcaa cggccgcaag agcgatccgg tcgatgcgca ctcggtggcc ctggccgcgt
      661 tgcgcacgcc ggacttggtc cgggtcgagg tggatccgga cctggtcgtg atggggatgc
      721 tggcagaccg acgcgacgaa ctcggtcgcg cgcggacgca gacggtcaac cggctgcacc
      781 gggtgctgct ggaacttttc cctggtggcg cgaagaagtt cctctccgcg gcccaggccc
      841 gcgccctcgt cgcgacgatc aagcctcgtg atctggtggg caagacccgc cgtcggctcg
      901 cggtcgagct gatcagtgag ctggagagca ccgacaagaa gagcaaagct gtcgacaaag
      961 acctccacga gctcgtcacc gcccgcggat ccacactcat ggacctgcac ggcatcggcc
     1021 cctcaggggc ggctcggctg ctcgccgacg tcggcgacat ccgccgcttc cgcgaccgga
     1081 atcggttcgc ttcctggaac ggcaccgccc cgctggacgc atcctccggc gcccagcaac
     1141 gccatcggct ctcccgagcc ggaaaccgcc gcatcaaccg aaccctgcat atcatggccg
     1201 tggtgcaact gcgcaatgcc accgaggggc gtgcctattt cgatgcgaaa aaggccgccg
     1261 gcaagacatc gatggaagcc atgcgagccc tcaaacgacg actctccaac gtcgtccacg
     1321 cccgcatgct cgccgaccag aaacgccgag aagcggcagg cccgggaggg cactcgggga
     1381 tgactctgca atccagcgtg accggcctga ccccggacac cggcccttcg aacaagccac
     1441 tacccggacc cgccaccacc cagcctagac ccgccctccc ccaggggtct tgacacaaag
     1501 gggagccatg agcggacgtt caactcgtta atccggctga accggactct gtgtcagacc
     1561 aggtattttg tggggactac aggcggttac ggcgat
//
LOCUS       DASVXZ010000673         3315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_434660, whole genome shotgun sequence.
ACCESSION   DASVXZ010000673 DASVXZ010000000
VERSION     DASVXZ010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434660"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VF788_14205"
     CDS             <1..589
                     /locus_tag="VF788_14205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEX8935312.1"
                     /translation="QPDRGTTYKLGDNNPSQIDQRAVVDPSFLELVRLGVKPATDPVI
                     SNTLAVIDKQLVTATPAGRFWHRFTSDGYGERADGGPWNINQPTPQRTYGRLWPILTG
                     ERGEYDLLAGDRTSATRALTAIAATAGAARMLPEQVWDDRSPAPNRARPGTATTSATP
                     LAWTHAQYIRLAWSIDAGHPIEQPTVVACRYTTTC"
     gene            complement(839..1798)
                     /locus_tag="VF788_14210"
     CDS             complement(839..1798)
                     /locus_tag="VF788_14210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007033177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC/Alx family metal homeostasis membrane
                     protein"
                     /protein_id="HEX8935313.1"
                     /translation="MGSLTLWLITIGAVLVLLAVDFLLTRRPHEVSLREAAGWSVFYV
                     ALPLTFGVFVWIAYGGERGLEFMAGYLVEKSLSVDNLFLFMLLLAGFAVPQVLQQRVL
                     LYGIVGALVLRGAFIALGAAALQAADEVFIVFGLILLVTAVKVIRDSRSGHGASTDVT
                     EMRSVRLLRRFMPVSQQYDGPRMTTLLDGRRALTPFALVVTAVLVTDAVFAVDSIPAV
                     YGITDDPYLVFATNAFALLGLRALYFLLQGLLSRLVHLGYGLGVILAFIGVKLLLHYA
                     HGVWPSVPEIPTLASLAVIVAVLAITTVTSLRASREPAVVVDG"
     gene            complement(2090..3022)
                     /locus_tag="VF788_14215"
     CDS             complement(2090..3022)
                     /locus_tag="VF788_14215"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX8935314.1"
                     /translation="MSRAYGFTSYGGPETETWFDRPEPSPGPSELVIRVKAVGVNPAD
                     YKIRNGAMANPQATPQFPRVLGVEAAGVVVAVGSDVEGFAEGDEVLGSTAPRHGSYAE
                     HAVLRADATTPKPPQISFVQAAALPVAGGTAWDALEKLGVAEGETLLINGVGGGVGVM
                     AAQLARNRGAAVFGVGSETKRPLVESLGAILVPYDTGDVVEQMRQLLPGGVDAIFDLV
                     GGESLRHVAILITNPARIVSIVDPSVADLGGSFLSGGSTGVAAVTDLVAAGKVDPKVL
                     QTYPFDEAPQALRAVESGHALGKIVIDLEQTTEV"
     gene            complement(3108..>3315)
                     /locus_tag="VF788_14220"
     CDS             complement(3108..>3315)
                     /locus_tag="VF788_14220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935315.1"
                     /translation="GCPRGTFWRCRHGGVLRGVSCSGGTRHSVHASDPVCCADNDLVS
                     TDVVVVVLVTAATGVQSRTSSVLS"
BASE COUNT          652 a         1181 c         1015 g          467 t
ORIGIN      
        1 ccagccggac cggggcacta cctacaagct cggcgacaac aaccccagcc agatcgacca
       61 gcgcgctgtc gtcgacccca gcttcctgga actggtccgt ctcggcgtca aacccgcaac
      121 cgacccggtc atcagcaaca ccctcgcggt gatcgacaag cagctggtta ccgctacccc
      181 ggccggacga ttctggcacc ggttcaccag cgacggctac ggcgaacgcg ccgacggcgg
      241 gccgtggaac atcaaccagc ccaccccgca gcgtacctac ggacgcctgt ggccgatcct
      301 caccggcgaa cgcggcgagt acgacctgct ggccggcgac cgaacctcgg ccacccgagc
      361 attgacagcc atcgccgcga cagcgggcgc cgcacgcatg ctccccgaac aggtatggga
      421 cgaccgatcc cccgccccga accgggcacg tcccggcaca gccaccacct ccgcgacgcc
      481 actggcgtgg acgcatgccc aatacatccg cctggcctgg tcgatcgacg ccggccaccc
      541 gatcgaacaa cccacagtgg tcgcctgccg atacaccacc acctgctgag ccactcaacc
      601 gtggaggagc tatcacgcca ggcaccaaca ctgagtcatt ccggcttcat cccgactgtt
      661 actgccagaa ttctcttcca gccacgagtg gtgcgccggg ccacctcggc ccacgcggcc
      721 cgcagctcat cgacgatctc cccatcagag atcaccgact ccaccccacc gacatggatc
      781 gatcatacgt tcgacacccg aaaaagcccg gatcacctcc gtcgcgacgg ggatcaacct
      841 atccgtccac tacgaccgcc ggctcacggc tggctcgcag gctggtgacg gtggtgatcg
      901 cgagtacggc gacgatgacg gcgagcgatg cgagcgtcgg gatttccgga accgatggcc
      961 acaccccgtg cgcgtaatgc agcagcagtt tgacgccgat gaaggcgaga atcacgccga
     1021 gcccataccc aagatgtacc agtcgcgaca gcaaaccttg aagcaggaag tacagcgccc
     1081 gcaggccgag cagcgcgaag gcgttggtgg cgaacaccag gtacgggtcg tcggtgatgc
     1141 catagaccgc ggggatcgag tcgacggcga acaccgcgtc cgtcaccagt accgccgtca
     1201 cgaccagagc gaacggcgtc agcgcccgcc ggccgtccag gagtgtggtc atccttgggc
     1261 cgtcgtactg ctggctgacc ggcatgaatc gccgcagtag gcggaccgat ctcatctccg
     1321 tgacgtcggt ggaggcgcca tgcccggatc gggaatcgcg gatcaccttg accgcggtca
     1381 ccaggaggat cagcccgaag acgatgaaga cctcgtcggc cgcctggagt gctgccgcgc
     1441 cgagcgcgat gaacgcgccg cgcaacacca gagcccccac gatgccgtac agcagcaccc
     1501 gctgctgtag cacctggggt accgcgaaac ccgccagcag cagcatgaac aggaacaggt
     1561 tgtcaaccga caacgatttc tcgacgagat agccggccat gaactccagg ccgcgctcac
     1621 cgccgtaggc gatccacacg aacacgccga acgtcagcgg caacgcgaca tagaacaccg
     1681 accaacccgc ggcctcccgc agcgacacct catggggccg ccgggtgagc aggaagtcga
     1741 cagcgagcag cacgagaacc gcgccgatcg tgatcagcca taaggtgagg gaccccaccg
     1801 ggggcgaccc accagggacg gctggagcag cggacagaaa gggcacagag atcacctggt
     1861 cgtcgggcgt accgaagcac agcgagccgc cgaggtctcc tccgccccgt caatacataa
     1921 caggccgcca ctcggggcgc ctcctgggac gccgtgctga ccgggtctgc gcgatgggag
     1981 tactcccctc catcaccagc gtaccgggtg ggctcaggtg atgcgcccac gacgacggtg
     2041 ccgagtgtct gctttcctgc cctcaacccc tgagcgtgac cagttgcggt cacacctcgg
     2101 tggtctgctc caggtcgatc acgatcttgc cgagtgcatg accggactcc acggctcgca
     2161 gtgcctgtgg cgcttcgtcg aaggggtacg tctggagcac cttgggatcg actttgcctg
     2221 cggcgacgag gtcggtgacg gcggctacgc ccgtcgagcc gcccgacaga aagctgcctc
     2281 ccaggtccgc gacgctggga tcaacgatcg acacgatccg ggccgggttg gtgatcagaa
     2341 tggcgacgtg gcgcagcgat tcgccaccga caaggtcgaa gatggcgtca acgccgccgg
     2401 gaagcagttg ccgcatctgc tcgacgacgt cgccggtgtc gtagggcacg aggatggcgc
     2461 cgagactttc caccaatggc cgcttggtct cgctaccgac cccgaagacc gccgcgccgc
     2521 ggttgcgcgc caactgtgca gccatcacac caacgccacc gccgacaccg ttgatcagca
     2581 acgtctcgcc ctcggcgacg ccgagtttct ccagcgcgtc ccaggcggtg ccaccggcca
     2641 ccggtagcgc ggctgcctgc acgaaactga tctgcggggg cttaggcgtg gtggcgtcgg
     2701 cgcgaagcac cgcgtgctcg gcgtagctgc cgtgtcgcgg cgcggtactg cccagcacct
     2761 catcgccctc ggcgaatccc tcgacgtcgg agccgactgc taccacgaca ccggccgcct
     2821 cgacgcccaa cacccgggga aactgtggtg tggcctgcgg gttggccata gcgccgttgc
     2881 ggatcttgta gtcggccggg ttgaccccga cagccttgac cctgatcacc agttcgcttg
     2941 gccctggtga gggctccggc cggtcgaacc acgtctcggt ctccggaccg ccgtaagagg
     3001 tgaaaccata ggccctgctc atcgcggtca gtcctctccc tcatcacgca ccggcgtgtc
     3061 tcggccgcag cctacgagga ttaaaggtgt cccgcgcagc gggtctttca agacagcacc
     3121 gacgaagtcc gggactggac tccagtcgcc gcggtgacca ggacaacgac cacaacgtca
     3181 gtgctgacga gatcgttgtc agcacagcac accggatcag aggcatgaac gctgtggcgg
     3241 gttccgccag aacatgacac gccgcggagg acaccgccat gacggcaccg ccagaaggtc
     3301 ccccgagggc atccg
//
LOCUS       DASVXZ010000674         2161 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1241263, whole genome shotgun sequence.
ACCESSION   DASVXZ010000674 DASVXZ010000000
VERSION     DASVXZ010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1241263"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(390..617)
                     /locus_tag="VF788_14225"
     CDS             complement(390..617)
                     /locus_tag="VF788_14225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935316.1"
                     /translation="MIEEAGNEEGSADLSHQKDATSATPKELAEALDAVRASSPSLGA
                     AIDAANVTPGKLADAHERATSEEPAPDHPQG"
     gene            complement(687..968)
                     /locus_tag="VF788_14230"
     CDS             complement(687..968)
                     /locus_tag="VF788_14230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935317.1"
                     /translation="MEVGRKPEELSKEQRQQLHRAHQHLRNASHALEALTVVEPVRGR
                     WVPTPAPVEALEAAQRDLYEACQELWRVHQELLCCDPPVSTSGADSGGS"
     gene            1214..>2161
                     /locus_tag="VF788_14235"
     CDS             1214..>2161
                     /locus_tag="VF788_14235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8935318.1"
                     /translation="MSPTATVARTPVADRYKWVALSNTTLGVLMAALDGSIVIIALPA
                     IFRGIGLDPLAPGNIGYLLWMIMGYLLVSAVLVVTFGRLGDMFGRVPMYNIGFLVFSI
                     ASLALSVDPFTGTDGALWLIGFRIVQAVGGAMITANSAAILTDAFPAQQRGMALGVNQ
                     ITALAGQFIGLLAGGLLAAVDWRAVFWINVPIGIVGTIWSYRSLREIGARRRARIDWM
                     GNLAFTAGSTVLLAAITFGIQPYGGYPTGWTSPWVLSGLAIGAALLMFFCVLETRIAE
                     PMFHLALFKIRAFATGNLAALLIAIARGGLQFMLIIWLQG"
BASE COUNT          348 a          708 c          681 g          424 t
ORIGIN      
        1 aatagccgcc gtagtgactg atcgggtcca atgtcgacac gacgatagtg cccgcagtgg
       61 aaatcttgat cgacatacag taatgcttcc ccgatagcca gtttcacgag cacctgcgca
      121 cccttcggcc ttcgagcatc ccgtgcggcc actcatccgc tctccgccgc cgacgtccgt
      181 cgccagcacc gcgagccggc acgccactga cgtaatcatg cgcgccgccc tgggttaacc
      241 cagggcggcg cttcactagg cgtcacggta caccgtatcg ggtcagagtt agcgtcacct
      301 aacgagggta agccgaccct aacctatccg caaggtcata cgcgtccctc cgagccggtg
      361 agcgctcgcg tggagatcga agacagcggc tagccctggg ggtggtcggg ggcgggctcc
      421 tcggacgtag ctctctcgtg cgcgtcagcg agctttccag gcgtcacgtt cgcggcgtcg
      481 attgccgcgc ccaatgacgg tgacgacgcg cgcaccgcgt cgagcgcttc ggccagctcc
      541 ttcggggtgg cactcgtagc gtccttctgg tgcgagagat ccgcactgcc ttcttcgtta
      601 ccggcttctt cgatcatctg cgcatcgtag ccctaatcga ttggcggcac aggatgggcg
      661 atccgggtcg gtacctgccg cggtcgttag cttccgccgg agtccgcgcc ggaagtgctc
      721 accggaggat cgcagcacag cagctcctga tgaacccgcc agagctcctg gcacgcttcg
      781 taaaggtcgc gctgcgccgc ctcgagagcc tcgaccggtg ccggagtggg aacccagcga
      841 ccgcggaccg gttcgaccac cgttaacgct tccagcgcat gcgaagcatt gcggaggtgc
      901 tgatgggctc ggtgaagctg ctggcgttgc tccttcgaaa gctcctccgg cttacgacct
      961 acctccacgt cgcaccctcc gagcagcgat ccctcttggt ccgtacgacc caaccgtagc
     1021 ccagcgacac tcgtctttgc gatcaacccg gtagccgcac ccaaagtccc gtccagttag
     1081 gggagcagct cgtcgagatc cgccagcgca gatcaattcg tacattctgg atgataaggc
     1141 tatattaatt agctgtgcaa actaactact cggtcctagc agtccgaccg ctggcaaagg
     1201 tgctggggct gtggtgagcc ccacggcgac cgtggcacga acgcccgtag ccgatcgata
     1261 caagtgggtg gcactgtcca acaccaccct gggcgtgctg atggccgcct tggacggatc
     1321 catcgtgatc attgcgctgc cagcgatctt ccggggcatc gggctggatc cgttggcgcc
     1381 cgggaacatc ggctacctgc tgtggatgat catgggttac ctgctggtgt ccgcggtgct
     1441 ggtggtgacg ttcgggcggc tgggcgacat gttcggccgg gtgccgatgt acaacatcgg
     1501 tttcctggtg ttcagcatcg cctcgttagc cctgtcggtc gatccgttca ccgggaccga
     1561 tggggcgctg tggctgatcg ggtttcggat agtgcaggcc gtgggcggcg cgatgatcac
     1621 ggccaactcc gcggcgatcc tcaccgatgc gttcccggcg cagcagcgtg gcatggcgct
     1681 gggcgttaac cagatcacgg cgctggccgg gcagttcatc ggcctgcttg caggcggcct
     1741 gctggccgcc gttgactggc gagcggtgtt ctggatcaac gtgccgatcg ggatcgtcgg
     1801 caccatctgg tcctaccgca gcctgcggga aatcggggcg cgtcggcgcg cccggatcga
     1861 ctggatgggc aacctggcct tcaccgcggg tagcacggtg ctgctcgccg cgatcacctt
     1921 cggcatccag ccctacggcg ggtatcccac cggctggacc agtccttggg tgctgagcgg
     1981 cctagcgatc ggcgccgcac tgctgatgtt cttctgcgtt ctggagaccc gcatcgccga
     2041 accgatgttt cacctcgcgc tgttcaagat ccgcgccttc gccaccggga acctggctgc
     2101 cttactcatc gccatcgccc ggggcggcct gcagttcatg ctgatcatct ggctgcaggg
     2161 a
//
LOCUS       DASVXZ010000675         3316 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_256225, whole genome shotgun sequence.
ACCESSION   DASVXZ010000675 DASVXZ010000000
VERSION     DASVXZ010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256225"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1869
                     /gene="thrS"
                     /locus_tag="VF788_14240"
     CDS             <1..1869
                     /gene="thrS"
                     /locus_tag="VF788_14240"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020636020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX8935319.1"
                     /translation="SPDGRSVIRHSCAHVLAQAVQQHYPTAKLGIGPPVTDGFYYDFD
                     VDRPFTPDDLAELEKTMRKIIKAGQRFSRRVLGSVSEARHELADEPYKLELIDLKKAG
                     SDISMDSDEVMEVGAGELTIYDNVHPHTGEVIWSDLCRGPHVPTTRYIPAFQLMRTAA
                     AYWRGSEHNPQLQRIYGTAWESTEALEKHLELLAEAQRRDHRRLGAELDLFSFPDEIG
                     SGLPVFHPRGGTVRRVMEDYSRRRHEEAGYEFVNSPHITKGQLFETSGHLDWYADSMF
                     PPMHLDEEVAPDGTVRKPGQDYYLKPMNCPFHNLIYRSRGRSYRELPLRLFEFGSVYR
                     YEKSGVVHGLTRVRGMTQDDSHIYCTPEQLHGEIRSLLTFVLDLLRDFGLDDFYLELS
                     TRDDEKYVGTDEQWEEATDALRLAAEASGLALVLDPGGAAFYAPKISVQAKDALGRTW
                     QLSTIQVDLQEPDLFALEYTAKDGSRQRPYMIHRALFGSIERFFGVLTEHYAGAFPAW
                     LAPVQVVGIPIADEHVEHLQQVAKALRARGIRVEVDASDDRMQKKIRTHTTQKVPFLL
                     LAGGKDVEAGAVSFRFRDGTQINGVGVEDAVSAIAGWIARRENRSPSAAELPIGEV"
     gene            1904..2449
                     /locus_tag="VF788_14245"
     CDS             1904..2449
                     /locus_tag="VF788_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEX8935320.1"
                     /translation="MTAEAQDGVGAPDALQRLWTPHRMAYIKQEGKAGPEGGAGQCPF
                     CRIIAMDDAEGLVIARGAAVYAVLNLYPYNPGHLLVVPYRHIADYPDLTIQETTELAT
                     FTQLAMLASRRAAAPHGFNIGINQGSVAGAGIAAHLHQHVVPRWGGDANFMPVVGRTK
                     VLPQLLAETHTLLVNAWKELS"
     gene            2431..>3316
                     /locus_tag="VF788_14250"
     CDS             2431..>3316
                     /locus_tag="VF788_14250"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEX8935321.1"
                     /translation="MERAVLNGAVNAAGGLYPGRSTANGVPTRRWKRRLLLFARLLFL
                     GSALGVLVWRLVADGAGALDPARRIGLATVLGSFVAAAAGMGASGLAWRNLLRGLDIP
                     LGLRAAVRVFFTGQIGKYIPGTVWAYVAQARLGQEHGVPASRTTAASVMFVVAHTATG
                     AVVAGLVLPFVSGEVFARFGWMAVLAPLLLASLHPRLVLPVLRLVHRVVGQGSPPERV
                     RGPAVLRALGWLAVTWVGYGMSMLLLLRPVARADARELLPPVALGGFAMAWTVGFIAA
                     GMLIVAPAGLGVREVALLM"
BASE COUNT          551 a         1021 c         1109 g          635 t
ORIGIN      
        1 agccccgacg ggcgcagcgt gatccggcat tcgtgtgcgc acgtcctcgc gcaagctgtg
       61 caacagcact atcccacagc caagctgggt atcggtccgc cggtgaccga tggtttctac
      121 tatgacttcg acgtcgaccg gccgttcacc cctgacgatc tcgccgagct cgagaagacc
      181 atgcgcaaga tcatcaaagc tggtcagcga ttctcccgac gcgtgctcgg ctcggtgagt
      241 gaggccagac acgaactggc agacgagccg tacaagttgg aactgatcga cctcaaaaaa
      301 gccggctcgg acatcagcat ggactctgat gaagtaatgg aagtcggggc gggggagctg
      361 acgatctatg acaacgtcca cccgcatacc ggtgaggtaa tctggagtga tctctgccgc
      421 gggccccatg taccgaccac acggtatatc ccggcgttcc agctgatgcg gactgcggcc
      481 gcctactggc ggggtagcga gcacaacccg cagttacagc ggatttatgg cactgcgtgg
      541 gaatccaccg aagcgctgga gaagcatctg gagttacttg ccgaggcgca gcggcgcgac
      601 caccgccggc tcggcgccga gctggacctg ttcagtttcc ccgatgagat cgggtcgggg
      661 ctgccggtgt tccatccccg tggcggcacc gtgcgccggg tgatggagga ctactcccgc
      721 cgccggcacg aggaagctgg ctacgagttc gtcaactcgc cacacatcac gaaggggcag
      781 ctcttcgaaa cgtccggtca cctggactgg tatgccgact ccatgttccc cccgatgcac
      841 ctcgacgagg aagtggcgcc ggatggcacg gtgcgaaagc ccgggcagga ctactacctc
      901 aaaccaatga actgcccgtt ccacaatctg atctaccgct cccgggggcg gtcctaccgg
      961 gagctgcctc tacggctgtt cgaattcggt tcggtgtacc ggtacgagaa gtccggcgtg
     1021 gtccatggct tgacccgagt acgcggcatg actcaggacg actcgcatat ctattgcacc
     1081 cccgagcagc tgcacggcga gatccgctcg ctgctgactt tcgtgctcga cctgcttcgc
     1141 gacttcgggc tggatgattt ttacctggag ctatctaccc gtgacgatga aaaatatgtc
     1201 ggcacagacg agcagtggga ggaggcgacc gacgcgttgc gcctagccgc tgaggctagc
     1261 gggctagcgc tagtgcttga ccctggcggg gcagcctttt atgcccccaa gatctctgtg
     1321 caggccaagg acgcattagg gcgcacctgg cagctgtcca ccatccaggt cgacctgcag
     1381 gagccggatc ttttcgcact ggaatacacc gcgaaagacg gctcccggca gcgtccttac
     1441 atgatccacc gagcgctgtt cgggtcgatc gaacggttct tcggggtgct caccgagcac
     1501 tatgcgggcg ctttcccggc ttggctggca ccggtgcagg tggtcgggat cccgatcgcc
     1561 gatgagcacg tcgaacatct ccagcaagtg gccaaggcgc tgcgcgcacg gggcatccgg
     1621 gtcgaggtcg atgcctcaga cgaccggatg cagaagaaga tccgtactca cactacgcag
     1681 aaggtgccgt tcctactgct cgctggcggc aaggacgtcg aggctggcgc ggtgtcgttc
     1741 cggttccgcg atggcactca gatcaatggc gtaggagtag aagatgcggt ctctgctatt
     1801 gccggttgga ttgcgcgacg ggaaaatcgt tcgcctagcg ccgcggagct gccgatagga
     1861 gaggtgtgat cgccgacgta cttagtcccg cggaggcggc gttgtgaccg ccgaggccca
     1921 ggacggggtc ggagcaccgg acgcgttgca gcggctgtgg acgccacacc ggatggcgta
     1981 catcaagcag gagggcaagg ctgggcccga gggcggtgcg gggcagtgcc cgttctgccg
     2041 gatcatcgct atggacgatg ccgagggctt ggtgattgcc cgcggagccg cggtttatgc
     2101 ggtgctcaac ctctatccgt acaatcccgg ccatctgttg gtggtgccct atcggcatat
     2161 tgccgactac ccggacctga cgatccagga gaccaccgaa ctggccacct tcactcagct
     2221 ggccatgctc gccagccgcc gcgcggccgc tccgcacggc ttcaacatcg gaatcaatca
     2281 aggttcagtc gccggcgcgg gcatcgcggc gcacctgcat cagcacgtcg tgccgcgatg
     2341 gggtggggac gccaacttca tgcctgtcgt cggtcgaacc aaggtgcttc cccagttgtt
     2401 ggccgagacc catacgttgc tggtgaacgc atggaaagag ctgtcctgaa cggcgccgtg
     2461 aacgccgccg gcggtctcta cccgggccgg tcgaccgcca acggcgtgcc gacaaggcgc
     2521 tggaaacggc ggcttctgct attcgcacga ttgctcttcc tcgggtccgc gttgggggtg
     2581 cttgtctggc gccttgtcgc tgacggcgcg ggcgcgctgg acccggcgcg aaggatcggt
     2641 ttggccacgg tcctcgggtc ctttgtggct gctgcggctg gtatgggcgc ttcggggttg
     2701 gcctggcgca acctgctccg cggactggat atcccgttgg gtctgcgcgc tgcggtccga
     2761 gtgtttttca ccggtcagat cgggaagtac atcccgggga ccgtctgggc ctacgtggct
     2821 caagccaggc tgggccagga gcacggggtc ccggcctctc gcaccacagc ggcatcggtg
     2881 atgttcgtgg tcgcacacac cgctaccggg gcggtggtcg ccggtctggt actcccgttc
     2941 gtctctggcg aggtcttcgc tcgtttcggc tggatggcgg tgctggcacc acttctgctg
     3001 gccagcctgc acccgcgcct cgtgctaccc gtgctccggc tggtgcaccg cgtggtaggc
     3061 cagggtagtc cgcctgaacg ggttcgcgga ccagcggtgc tccgtgcgct gggttggctc
     3121 gcagtgacct gggtgggtta cggcatgagc atgctgttgt tgcttcggcc agtcgcccga
     3181 gccgacgccc gcgaattgtt acctccggtc gcattgggcg ggttcgcgat ggcctggacg
     3241 gtcggtttta tcgctgctgg gatgctgata gtggcgccgg ctgggctcgg ggtgcgggag
     3301 gtcgcgctgc tgatgg
//
LOCUS       DASVXZ010000676         3401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_166234, whole genome shotgun sequence.
ACCESSION   DASVXZ010000676 DASVXZ010000000
VERSION     DASVXZ010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3401
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166234"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..919
                     /locus_tag="VF788_14255"
     CDS             <1..919
                     /locus_tag="VF788_14255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M17 family metallopeptidase"
                     /protein_id="HEX8935322.1"
                     /translation="PKDPSWLAGTAARLAATVPGLRAIVRDERWLAEHGFGGILAVGG
                     GSARPPRLLELAWQPAGVKTDHHLVLVGKGITFDTGGISIKPADGMHLMRTDMSGGAA
                     VIAALLALGQLDVPLRVTGLVPCAENHVSGSAYRPGDIVRHVGGHTTEVTNTDAEGRL
                     VLADALAYAVRTLAPTALVDIATLTGAMKVSLGLRTGGLFATEPGLVGRIQAAGEVTG
                     ETWWPMPLLDDHADEVRSDIADLRQCPPGPAGITAALFLREFTGGLPWAHLDIAGPAR
                     AEESYDEVNPGGTGFATRTLIELACSFTS"
     gene            932..1876
                     /locus_tag="VF788_14260"
     CDS             932..1876
                     /locus_tag="VF788_14260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8935323.1"
                     /translation="MATSPAGAGRVVITGGAGFVGRAAVAAFASRGDSVTVLDRAAHP
                     DPVVHSVVGELTDPRVISEALGSGDVAGVVHLAAITSVLRSIQHPVATYQTNVTVTQD
                     LLESCRQAGVERFIMASTNAVVGDVGYATMDEAAQLRPLTPYGATKAAGEMLLRGYAG
                     AYGMATCALRFTNVYGPGMQHKDSFVPRMMRAALADRGIQIYGDGLQRRDFVHVDDAI
                     TAVLAAWDRRFTGTAIIGSGVSVTVLELLDVVRAVTGCPLPAEHVPAMPGEMPAVIVD
                     IGQAGEQLGYRPSMSLVDGLATVWKDFMVISGAGGLHR"
     gene            1873..>3401
                     /locus_tag="VF788_14265"
     CDS             1873..>3401
                     /locus_tag="VF788_14265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX8935324.1"
                     /translation="MTELLARPETGASDPSAPVVASRVLRWCRVPQWFRVHWMLLALL
                     AMGTGLRALTVLAYQPAILYIDSFSYLDNIHDLRPDGLRPIGYDLILNVLLPFGGLRG
                     VAIGQHLLGLGIAGLIYRMLLRHGARRWLAALATAPVLLDAYQVQIEHNIMPDIWFQA
                     LLVVIIWVLTWRGLPSPWHAAGAGALIGFAVIVRLVGIALLIPAVAYLIVAGSLWVSL
                     NGWRRIALRAVAMAAGFAVLLGGYATYYRITTGVWGISGASDGVLYGRAAVIADCERI
                     LAGTSERAVCPAQPRDHRFGVDYYVHDLASPAMTVVLPPGESMEATQASFARQVFANQ
                     PFDLAVAISKDFVKGFRPVRVDTVNDVPVERWYFQTAYPYFGIRELVDARAFEFGGVP
                     IGVNPTLAKLLQGYQLTVGYTPGPLLGLGLVVGLLGGFGMGNARRSGIRAASLLVSGM
                     AVTVLLTAAAFEFSWRYQLPGLVLLPMAGALGVTAFTGPLRRPGPRRKLNPPMQPYPD
                     P"
BASE COUNT          471 a         1099 c         1185 g          646 t
ORIGIN      
        1 ccccaaagac cccagctggc tcgccggcac cgccgctcgc ctggccgcta ctgttcccgg
       61 cctgcgggcg atcgtgcgcg atgaacgttg gctcgccgag cacggcttcg gggggattct
      121 cgcggtcggt ggcggctcag cgcgcccgcc gcggttgctt gaactggcct ggcagccggc
      181 tggagtgaaa accgaccacc acctggtgct ggtcggcaag ggcatcactt ttgacacggg
      241 cgggatctcg atcaagccgg ccgacggtat gcatctgatg cgcaccgaca tgtccggggg
      301 cgcagcggtg atcgccgcgc tgttggccct gggccagctg gacgtgccgc tgcgggtgac
      361 cgggctggtg ccgtgcgcgg agaaccacgt gtcaggatcg gcgtatcgcc caggcgacat
      421 cgtgcggcac gtcggaggcc acaccaccga ggtgaccaac accgacgccg aaggccggct
      481 ggtgcttgct gatgcgctgg cctacgcggt acgtacgctg gcgcccactg ctctggtcga
      541 catcgccacg ctgaccgggg cgatgaaggt gtccctgggc ctgcgcaccg gtgggttgtt
      601 cgccaccgag cctggactcg tcggacgcat ccaggctgca ggcgaggtca ccggcgaaac
      661 ctggtggccg atgccactac tcgacgatca cgctgatgag gtgcgctcag acattgctga
      721 tctacggcag tgcccgcccg ggccagcggg catcaccgct gcgctgttcc tccgggaatt
      781 caccggcggg ctaccctggg cgcatctgga tatcgccggc ccggcccgcg ccgaggagag
      841 ttacgacgag gtcaacccgg gcggcaccgg attcgccacc cggaccctga tcgagttagc
      901 ctgctcgttc accagctagg ctctcgcgcc gatggccact tcaccagccg gcgccggccg
      961 ggtcgtgatc accgggggcg cgggcttcgt tggtcgcgcc gcggtcgccg cgtttgcttc
     1021 ccgcggtgac tcggtcaccg tcctcgaccg cgctgcgcat cccgatccgg ttgtccacag
     1081 cgtggtaggt gagctgaccg atccgagggt gatcagcgag gcgttgggta gcggtgacgt
     1141 ggccggcgtg gtgcatctgg ccgctatcac ctcggtgctg cgctcgatcc agcacccggt
     1201 ggctacctac cagacgaacg tgacggtgac ccaggacctg cttgagagct gtcggcaggc
     1261 cggcgtcgag cggttcatca tggcctccac caacgcggtg gtcggggatg tcggctacgc
     1321 cacgatggac gaggcggcac agcttcgtcc gctgacccct tatggtgcca cgaaggcggc
     1381 tggcgagatg ttgctgcgcg gctacgcggg tgcttacggc atggctacct gcgcgctgcg
     1441 cttcaccaac gtctacggcc caggaatgca gcacaaggac agcttcgtgc cgcggatgat
     1501 gcgcgctgca ttggccgatc ggggcataca gatctacggc gacgggttac agcggcgtga
     1561 cttcgttcac gtcgatgacg ccattacggc ggtgctcgcg gcatgggacc ggcgctttac
     1621 gggtaccgcg atcatcgggt cgggcgtctc ggtgaccgta ctggaactcc ttgacgtggt
     1681 gcgcgcggtc accggctgcc cgctacccgc cgagcacgta cccgccatgc cgggggagat
     1741 gcccgcggtg atcgtcgata tcggccaggc cggcgaacaa ttgggttacc ggccctcgat
     1801 gtcattggtc gacgggctgg ccacggtgtg gaaggacttc atggtgatca gcggcgcggg
     1861 tggtctgcac cggtgaccga gctgctggcc cggccggaga ccggtgcatc ggatcccagc
     1921 gctcccgtgg tggcatcccg ggtgctgcgg tggtgtcgag taccgcagtg gtttcgggtg
     1981 cactggatgt tgctggcgtt gctggcgatg ggtaccggct tgcgagcact caccgtgctc
     2041 gcgtaccagc ccgcgatcct ctatatcgac tccttcagct acctggacaa catccatgat
     2101 ctgcgccccg acgggctgcg cccgatcggt tacgacctca tcctgaacgt gctgctgccc
     2161 ttcggcggcc tgcgtggggt ggcgatcggg cagcacctgc tcgggctggg catcgcgggg
     2221 ttgatctacc ggatgctgct gcgccacggc gcccggcgct ggctggccgc gttggccact
     2281 gcgccggtgc tgctcgatgc ctaccaggtg cagatagagc acaacatcat gccggatatc
     2341 tggttccagg cattgctcgt agtgatcatc tgggtgctga cctggcgcgg gctgcccagc
     2401 ccttggcatg ccgcaggcgc cggagcgttg atcggctttg cggtcatcgt gcggctggtc
     2461 ggcatagcgc tgctgatacc ggcggtggcg tacctgatcg tcgccgggtc gctgtgggtc
     2521 agcctgaacg ggtggcggag gattgcgctg cgagcagtgg ccatggcggc aggtttcgca
     2581 gtgctgctcg ggggttacgc cacctactac cggatcacca ccggggtttg gggtatcagc
     2641 ggtgccagcg atggcgtgct ctacgggcgc gccgcggtca tcgcggattg cgagcgtatc
     2701 ctggctggaa cctcggagcg cgccgtgtgt cctgcgcaac cacgcgatca tcgtttcggc
     2761 gtcgattact acgtccacga tctcgcgtcg ccggccatga ccgtcgtgtt gccgcccggt
     2821 gagtcgatgg aggcgaccca ggcttcgttt gctcgccagg tgttcgcgaa tcagccattc
     2881 gatctcgccg tcgcgatcag caaggatttc gtgaaggggt tccgtccggt ccgcgtcgac
     2941 accgtgaacg acgtaccggt cgagcggtgg tacttccaga ccgcgtaccc gtacttcggt
     3001 atccgggagc tggtcgatgc gcgagccttc gagttcggcg gcgtaccgat cggtgtcaac
     3061 ccgacgcttg ccaagctgct ccagggttac cagctcacgg ttgggtacac ccctggccca
     3121 cttctcggtc tcggtctggt ggtgggtctg ctcggtgggt tcggcatggg caacgctcgc
     3181 cggtcgggga ttcgtgctgc cagccttctg gtgtccggga tggctgtcac tgtgctgctg
     3241 accgcggcgg ccttcgagtt ctcctggcgc taccagttac ccgggttggt gttgttgccg
     3301 atggccgggg cgctgggcgt gaccgccttc accggcccgc tgcgcaggcc aggcccccgg
     3361 cgcaagttga accccccgat gcagccttac cccgatccga t
//
LOCUS       DASVXZ010000677         3413 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1381870, whole genome shotgun sequence.
ACCESSION   DASVXZ010000677 DASVXZ010000000
VERSION     DASVXZ010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1381870"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..793)
                     /locus_tag="VF788_14270"
     CDS             complement(<1..793)
                     /locus_tag="VF788_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045550 - geranylgeranyl reductase
                     activity [Evidence IEA];
                     GO_process: GO:0015995 - chlorophyll biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0030494 - bacteriochlorophyll biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranyl reductase family protein"
                     /protein_id="HEX8935325.1"
                     /translation="MARQAGASNSDADVIVVGAGPAGSTAAAYLARSGLDVLLLEKST
                     FPREKVCGDGLTPRGIKQLIDLGIDTSTEAGWLHNRGLRVVGGGVTIELDWPDLASFP
                     PYGAVRQRQDFDEMLARHAEKAGARLHEHTTVTGAVTDERTGRVTGVTGRQGPDKQPV
                     TYRAPITLACDGVSARLALSLGMDKREDRPMGVGVRRYYTSPRTDDDFLESHVEIWDR
                     ANPQQPKLLPGYGWIFGMGDGTSNVGLGILSTSQAYGKVDYRALLR"
     gene            complement(892..2172)
                     /locus_tag="VF788_14275"
     CDS             complement(892..2172)
                     /locus_tag="VF788_14275"
                     /inference="COORDINATES: protein motif:HMM:NF040070.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6350 family protein"
                     /protein_id="HEX8935326.1"
                     /translation="MSLLQSPPARDAAGDGTGTRPGWGTLVSSACLPAAISYLAAAAV
                     LATLTAAGGADSSVAWAARVGAMGWLAAHHVPLTIDGASLGVLPLLPTLLVGALVARG
                     AARSAARSRLHQPEDAGWVAGAIAGTHGVFGAVLALVATPVTVTADPALAAVTCALVA
                     GAAAVVGLARPCGLLPAALRQAPEWVRPGVYAGLWGLAVLLAAGLITVLIALVVSAFD
                     VIQLSGSDAGSAFGLIVLSLAYLPNAAIAGLSWLAGPGFSIGALSISPFAVHAGPVPA
                     VPLLAALPQGPARPWWIMSLVVPLLVGMAVGWRCAAIASERSERLRILGVAAAVMALG
                     SAVLGALAGGRLGAAAFDPVDIPFGMLMVAVLTATLLGGSAATLLLPFPREETAPGTV
                     EIADEHSASIPDEDRASGVAEFGSSAVPDQPEQL"
     gene            complement(2279..3184)
                     /gene="sucD"
                     /locus_tag="VF788_14280"
     CDS             complement(2279..3184)
                     /gene="sucD"
                     /locus_tag="VF788_14280"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEX8935327.1"
                     /translation="MAILLTKDSRIIVQGMTGAEGRKHTQRMLHAGSQVVGGVTPGKG
                     GQTVEFDSASLPVFGAVAESMAATGADVSVVFVPPRFAKNAVLEAIDAGIGLIVVITE
                     GIPVHDAAIFCAHAGATGLAAGPAPTRIVGPNCPGVISPGASNAGIIPADITGPGRIG
                     LVSKSGTLTYQMMFELRDIGFSTCVGIGGDPVIGTTHIDALQAFEDDPDTAAIVMIGE
                     IGGDAEERAAEYIKAHITKPVIGYIAGFTAPEGKTMGHAGAIVSGSSGTAAAKKDALE
                     AAGVQVGTTPSDTAELMRHIMKSLS"
     gene            complement(3189..>3413)
                     /locus_tag="VF788_14285"
     CDS             complement(3189..>3413)
                     /locus_tag="VF788_14285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit beta"
                     /protein_id="HEX8935328.1"
                     /translation="TACDQVATGIVQALSILGDTAAKPLVVRLDGNNVAEGRRILAHA
                     AHPLVTMVDTMDAAADKAAELAALTCAKGA"
BASE COUNT          578 a         1208 c         1110 g          517 t
ORIGIN      
        1 accgcagcaa cgcccggtag tcgacctttc cgtacgcctg ggaggtcgac aggatgccca
       61 ggccgacatt ggacgtcccg tcacccatac cgaagatcca gccgtagccg ggaagcagct
      121 tgggttgttg cggattggcc cggtcccaga tctccacgtg gctctcgagg aagtcgtcgt
      181 cggtgcgggg gctggtgtag taccggcgca ctccgacacc catcggccgg tcctcgcgct
      241 tgtccatccc caggctcagc gcgagccggg ccgagacccc gtcacaggcc agcgtgatcg
      301 gcgcccggta ggtcaccggc tgcttgtccg gtccctgcct gccagttacg ccggtgaccc
      361 ggccggtgcg ctcgtcggtg acggctccgg tcaccgtggt gtgctcgtgc agccgggcgc
      421 cggccttctc cgcgtgccgc gccagcatct cgtcgaagtc ctggcgctgg cgaaccgcgc
      481 cgtagggcgg gaagctggcc agatccggcc agtccaactc gatcgttaca cccccgccca
      541 ccacccgcag accccggttg tgcaaccagc cggcctcggt gctggtgtcg atgcccaggt
      601 cgatcagttg ctttatacct cggggggtca gcccgtcccc acacactttc tcgcggggga
      661 atgtggattt ctccagcagc agcacgtcca gcccggagcg agccaggtac gcggcggccg
      721 tcgagcctgc gggtcccgcc cccaccacga tcacatctgc atcgctattg ctggcgcccg
      781 cctgcctggc catcccgctc cctcgctgct gggttgccgc accgccgtcc gactgagtgt
      841 acgggtcagc gggcgcctga cgtgcctgct ctgttatcgc cgagttcgac ctcagagctg
      901 ttcgggttgg tccggcaccg cgctgctgcc gaactcggcg acaccagagg cgcggtcctc
      961 atcgggaatg gaggcgctgt gctcatcggc aatctcgacc gtgccgggtg ctgtctcctc
     1021 gcgaggaaaa ggcagcagca gggtggcggc gctgccaccc agcagggtcg cggtcagcac
     1081 ggccaccatg agcattccga aaggtatgtc aacagggtcg aacgcagctg cgccgagccg
     1141 ccctccagcc agcgcgccga gcactgcgct ccccagcgcc atcaccgcgg cggccactcc
     1201 gaggatgcgc agccgctccg accgctcgct tgcaatggcg gcgcaacgcc aacccactgc
     1261 catcccgacc agaagcggca ccacaagcga catgatccac cagggtcggg cgggaccctg
     1321 cggcagagca gccagcaggg gtaccgccgg cactggtccg gcgtgcacgg cgaacgggct
     1381 gatcgacaac gcaccgatcg agaaacccgg tccggccagc caggacagtc cagcgatcgc
     1441 ggcgtttggc aggtatgcaa gcgacaggac aatcaagccg aaggcacttc ccgcgtcgga
     1501 ccccgaaagc tggatgacgt cgaacgcgga caccaccaga gcgatcagga ccgtgatcag
     1561 gcccgctgcg agcagcaccg ccaaccccca caatccggcg tacacgccgg gccgcaccca
     1621 ctcgggagcc tggcgaagcg ccgcgggcag cagcccacac ggccgggcca agcccaccac
     1681 cgccgcggcg ccagccacca gcgcacaggt gacggcggcc agtgcgggat ccgccgtaac
     1741 cgtcaccggc gtggcaacca gcgccaggac agcgccgaag acaccatgag tgccggcgat
     1801 cgccccagcc acccagcccg cgtcctccgg ctggtgcagc ctggagcggg ccgccgacct
     1861 cgccgcaccg cgggccacca gcgcgcccac gagcagggtg ggcaatagcg gtaggacacc
     1921 gagcgaagca ccgtcgatcg tcagcgggac gtggtgcgcg gccagccagc ccatcgcacc
     1981 cacccgagcc gcccaggcca ccgagctgtc tgccccaccg gccgcggtga gggtggcaag
     2041 cacagcggca gcagccagat agctgatggc tgcgggcagg caggcggagc tgaccagcgt
     2101 gccccagcca ggacgcgtac cggtgccgtc acctgctgcg tcacgggctg gcggcgactg
     2161 cagaaggctc acgtcctcca ccctcgcagc tgggtgacgc actcctggcg atcacttggc
     2221 cgacgcgccc ctgatgtaac cggatcggag tactggacgg gccggattca ggcgtccgct
     2281 aggacagcga cttcatgatg tggcgcatca gctccgcggt gtcgctgggt gtcgtaccga
     2341 cctggacgcc tgccgcctcc aaagcgtcct tcttggccgc ggcggtgccg gaggagccgg
     2401 aaacaatggc gccggcgtgg cccatggtct taccttcagg cgcggtgaaa ccggcgatat
     2461 aaccgataac cggtttggtg atgtgtgcct tgatgtattc ggctgcgcgt tcttcggcgt
     2521 ccccaccgat ctcgccgatc atcacgatcg ccgccgtgtc agggtcgtct tcgaatgctt
     2581 gcagtgcgtc gatatgagtg gtgccgatca ccggatcacc accgattccc acgcaggtgg
     2641 agaaaccgat atcacgcagc tcgaacatca tctggtaggt cagggtgccg gacttggaca
     2701 ccagcccgat ccggcccggg ccggtgatgt cggcaggaat gatccccgca ttcgacgcac
     2761 cgggactgat cacaccaggg cagttcggtc caacaattct ggttggtgct ggacccgccg
     2821 ccaggccggt agcgccggca tgcgcgcaaa agatggcggc atcatgcacc ggaatccctt
     2881 cagtgattac tacgatcagc ccgatgccgg catcgatagc ttcgagtacc gcgttcttgg
     2941 cgaagcgggg cggcacgaag accacgctga cgtcggcacc ggtagccgcc atcgactcgg
     3001 ccaccgcgcc gaacacgggc agcgaggcac tgtcgaactc aacggtctgg ccacccttgc
     3061 cgggggtgac gccgccgacg acctggctgc cggcgtgaag catccgctga gtgtgcttgc
     3121 ggccttcggc accggtcatc ccctggacga tgattctcga gtccttggtc aggaggattg
     3181 ccatctggtc atgctccctt ggcgcaggtc aaagcggcca gttcggcggc cttatccgcc
     3241 gcggcgtcca ttgtgtcgac catcgtgacc agcgggtggg ccgcgtgggc gagaatccgg
     3301 cggccctcgg caacgttgtt gccatccaac cggaccacca ggggcttcgc cgcagtgtcc
     3361 cccaggatgc tcaaggcctg cacgatgccg gtggccacct gatcgcaggc ggt
//
LOCUS       DASVXZ010000678        10356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1651372, whole genome shotgun sequence.
ACCESSION   DASVXZ010000678 DASVXZ010000000
VERSION     DASVXZ010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10356
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1651372"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..707)
                     /locus_tag="VF788_14290"
     CDS             complement(84..707)
                     /locus_tag="VF788_14290"
                     /inference="COORDINATES: protein motif:HMM:NF025080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935329.1"
                     /translation="MRLFTFGHVRQLDAVAAGFLARLVAVTPLLPGAGQVAFVDVDDT
                     VRGTYGYAKQGAGPGYTGVNGLNALLATISTPLSAPVIAATRLRRGAVNSARGAVKLL
                     ADALAYARRAGATGLVIVRADSAFYSYDIIAAARRAEAHFSLTARLTPAVIRAITSID
                     EQAWNPIRYPTRSMTTTSSAGSPTQKSPRYPSPRSPASTTHSTSPPG"
     gene            1213..1443
                     /locus_tag="VF788_14295"
     CDS             1213..1443
                     /locus_tag="VF788_14295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935330.1"
                     /translation="MTIKNVLLAVGYTGVLLGTLAFPAYADDAPGGAIVVSGPVQMVS
                     VQDCLNGGGRPNYFGSHGVCQGGLHNGEYINS"
     gene            1910..2218
                     /locus_tag="VF788_14300"
     CDS             1910..2218
                     /locus_tag="VF788_14300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935331.1"
                     /translation="MAASPERAERGVDPSGVSLVSINASFGAEGVVVPDTVTNDDVAR
                     RRADDLDAEAAYYRRRAIQEEQALGPGYYVDLLRGMATGRAALAQRIRTGKGSSQRSN
                     "
     gene            complement(2865..3041)
                     /locus_tag="VF788_14305"
     CDS             complement(2865..3041)
                     /locus_tag="VF788_14305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935332.1"
                     /translation="MTFPSYADPPLATQNTGGQRTPGKYVMCDADRVNYGQGRSRPRV
                     VLLDPPSDGVEGHT"
     gene            3043..3456
                     /locus_tag="VF788_14310"
     CDS             3043..3456
                     /locus_tag="VF788_14310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935333.1"
                     /translation="MTKLGVGQGSGYRRAAALMPPRWLRAVPPVWWALVGWCAGSPVG
                     YGLTGSVTGGPEPLGSGSGRSTAAGLGGGATPWGVSVAPPPVLLPVEPAPAASAESRK
                     HSHSFATATRKRVVLLPHAPSEPTDTRPFHCRTPQ"
     gene            complement(3976..4375)
                     /gene="rnpB"
                     /locus_tag="VF788_14315"
     ncRNA           complement(3976..4375)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VF788_14315"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(4542..4751)
                     /locus_tag="VF788_14320"
     CDS             complement(4542..4751)
                     /locus_tag="VF788_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007028173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2945 domain-containing protein"
                     /protein_id="HEX8935334.1"
                     /translation="MAQEFRVGDKVRWRSHGGHAEGEVLQKITADTEAGGRTVRASSE
                     EPQYLVRSNKSGGQAVHKPDALEKM"
     gene            4888..5640
                     /locus_tag="VF788_14325"
     CDS             4888..5640
                     /locus_tag="VF788_14325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX8935335.1"
                     /translation="MPSANLALLVVAGVLSGMVNALAGGGSLLLFPALLAAGLPPLAA
                     NVTNSVAQCPGYLGFALGSRGELRGQRSRVLSTMGVAVLGSLVGSLLLLVLPAPVFNA
                     VIPGLVALASLLLGVQPWLARWIGEPESRNPDRYAVLLPAVFIGAVYGGYFGGALGVL
                     LIAVLALTAHDDLRRLNAVKGVLSLIISVVSVPVFAIGAPVNWLAVALLAPATLVGGF
                     IGAKLAGRLPASALRVGVVVVGLAVSIYLFLR"
     gene            complement(5695..6807)
                     /locus_tag="VF788_14330"
     CDS             complement(5695..6807)
                     /locus_tag="VF788_14330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012796219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional RNase H/acid phosphatase"
                     /protein_id="HEX8935336.1"
                     /translation="MTRRVIIEADGGSRGNPGPAGYGAVVRDADTGEILVETSGGLGC
                     TTNNVAEYSGLIAGLRAAVKEGAVGAEARLDSKLVVEQMSGRWQIKQPHLRPLASEAA
                     GLARELGEVTYTWVPRARNAHADRLANEAMDAQAGFSREPAAQTRGTQAPRYWTGATG
                     SPTRLLMLRHGQTEHSAQRRYSGRGDLPLTELGERQAAAAAARLATIDDVTAVISSPL
                     RRARQTAKSVSDVLGVPMHVHDGLIETDFGAWEGLTFAEASARDPDLHTRWLTDTSVS
                     PPGGESMDAVHRRVRKVRDQLIAEHGGATLIVVSHVTPIKSLLRMALDAGPSLLYRLH
                     LDVASLSIAEFYPDGPATVRLVNDTSHLPQPPRVAP"
     gene            complement(6804..7544)
                     /locus_tag="VF788_14335"
     CDS             complement(6804..7544)
                     /locus_tag="VF788_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HEX8935337.1"
                     /translation="MNADPAAQRRLLDLAAVDAELTRAAHRRRSLPELAELEEVTKAL
                     QAGRDSLVAAETMASDLDRDIRKLEAEIDQVRAREDRDRGLLDSGSISSGKQLEDLQH
                     ELATLRRRQTVLEDDLLEVMERREVTDADLEQRRVKLADIEQRHLEATRRRDEALTEL
                     ESTELQGNQERTILVGGLPAELVTLYERIRARNGSGAALLRGGRCGACRLELDRTAIG
                     RLRDASPDEVVRCEECGVVLVRTPESGL"
     gene            complement(7541..8374)
                     /locus_tag="VF788_14340"
     CDS             complement(7541..8374)
                     /locus_tag="VF788_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020643668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEX8935338.1"
                     /translation="MTTTVQDVVAALEVAYPPTLAASWDAVGLVCGDPAERVQRVLVA
                     VDPVVDTVAEALERGAQLLVTHHPLLLRGVHGVPADDPKGGLVHRLVRAGVGLFCSHT
                     NADSAYPGVSDALAHALGLQVTGVLEPRGEAERTGLGRICELPEPESLRVFTDRVHAA
                     LPETAWGVRAGGDPQRAVRTVAVCGGAGDSLLGLASAAEVDAFVTADLRHHPASEHLA
                     AGGPALVDIAHWASEHPWCAQAAAVLSAALGGTVDVHVSYRRTDPWTIGTAQSSGRLS
                     R"
     gene            complement(8424..9449)
                     /gene="cobC"
                     /locus_tag="VF788_14345"
     CDS             complement(8424..9449)
                     /gene="cobC"
                     /locus_tag="VF788_14345"
                     /EC_number="4.1.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rv2231c family pyridoxal phosphate-dependent
                     protein CobC"
                     /protein_id="HEX8935339.1"
                     /translation="MDQLLSHHGDVDAAPGLLDFAVNVRGGQAPPWLRERLIAALDGL
                     GRYPSAAQDTAARVAVAARHGRDPGEVLVLGGVAEGFAILPALAPRSAVVVHPSFTEP
                     EVALRRAGIPVRRVLTDAAYQLRPEWIPAGADLVVLGNPTNPTSVLHPAEVVRALARP
                     GRVLVVDEAFADAVPGEPESLATDQTTPGLLVFRSLTKTWALPGLRAGYALGAPDLLA
                     RLASPRPPWPVGTLVLEAARACSTPAAIAEAAAAAAQTVRQREWMIRQLTDLPGITVH
                     QPAAAPFLLLRVLGGERVRTALLDAGIAVRRADTFPGLTPDHLRVAVRPPEIATRLID
                     ALRASLR"
     gene            complement(9496..>10356)
                     /locus_tag="VF788_14350"
     CDS             complement(9496..>10356)
                     /locus_tag="VF788_14350"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8935340.1"
                     /translation="VGVTHECDYPSGVERKPQLTASRISHQTMSSAEIDHAVRSQLDG
                     HGCIYDLDEDLLRMLAPDLILTQELCDVCAVSYRTVQQAARRLDTDATIVSLEPATIG
                     DILANIVTVGELTGREAEAAALVDGLRARLDVLSVALSQVTRRPRTLVLEWLEPPFAP
                     GHWVPEQVDLAGGDAGFAAAGEASRITSAAEISAYAPEAIVLAPCGFYATDTLRQLPR
                     ARLPAGWSELPAVKDRNVWAVDATSYFSRPGPRVIDGAEILAHILHPDVVGPPEPQHA
                     VSVSPELMRV"
BASE COUNT         1704 a         3455 c         3454 g         1743 t
ORIGIN      
        1 gtggtagcgg tggacggcga acagctcgtc ttgttcaccc cgtgcggcgg cagtcgggtt
       61 gcgtcggcgg acccggcgca cgatcagccg ggcggtgatg tgctgtgcgt ggtgctagct
      121 ggtgaacgcg gtgaagggta ccttggtgac ttctgcgtcg gagatccagc gctgctcgtc
      181 gtggtcatag atcgcgtggg gtagcggatc gggttccacg cctgctcatc gatgctggtg
      241 atggccctga tcaccgctgg ggtcaggcgg gcggtgaggg agaagtgggc ctcggctcgc
      301 cgcgccgcgg cgatgatgtc atagctgtaa aacgccgagt ccgcgcgcac gatcaccagc
      361 ccggtggcgc cggcgcgccg tgcgtaggcc agggcgtcgg cgagcagttt gaccgcgccg
      421 cgagcggagt tcaccgcgcc gcggcgcaac cgggtggccg cgatcaccgg cgcggacaac
      481 ggcgtggaga tcgtggccag cagcgcgttg agcccgttga cgccggtgta gccgggcccc
      541 gcgccctgct tggcgtaccc ataggtcccc cgcaccgtgt catcgacatc gacgaaggcc
      601 acctgcccag ccccgggcaa caatggcgtc accgcgacca acctggcgag gaacccggcg
      661 gcaaccgcgt cgagctggcg gacgtgaccg aaggtgaaca ggcgcaaaac gtgcccagcg
      721 tcgagggcgc ccgaacaccc tcgaacaacc ggcccatccc accatggcgc agcagatcca
      781 tgtcattgat gctgcgtcat tgatgctgcc gtgcgtcata acccacccat accaacaaat
      841 tcagcggtgg atccaggcaa agccacgact cggttgaata tgtcgcttat aacagtaaaa
      901 cctactggca ggggaatttc gattgaccgg acacgtcaaa ccgcttatcg atttgatgga
      961 tcttcataaa ttccgtgcgg caattgcgga gaccggctca ggtgagatca gaagacgcag
     1021 cggcctcatg cacatgccac atccaagcgg tgaacagcga gccagcatcg accgacacca
     1081 ccaatcgcca atttaacgtg ttgaccagct gggccaagtc accattagcg gcgagatgtc
     1141 ttaaacccag aggttccaag atgtatcgta gttctcgtgt agaaggtaca cacgaccgga
     1201 ggagatgtag ggatgacgat caagaatgtg ctcctcgcgg tggggtacac gggagtattg
     1261 ttggggacgc tggcatttcc tgcctacgcc gacgatgcgc cgggcggtgc gatcgtcgtg
     1321 agcggtccgg tccagatggt ctcggtgcag gactgtctga acggtggtgg gaggccgaat
     1381 tacttcggtt cgcacggagt gtgccagggt ggtttgcaca acggggaata catcaacagc
     1441 taagactgcc ccgccccggc tgccgtcatc gcaactgaac cgatcttcga aattgccgcc
     1501 cgcgcgacgg gaaacagtct cagcggtagt gcgactgctt gccgacgcgc gactggcggt
     1561 gcggtaccga caccgccttc atgatctccg gccgtcgcca tcatgatttc gcgttggccg
     1621 ctcttcacac cgcgcgcgag ggcgacgctc gctggctacc gcggatggtc gtgacctgtc
     1681 gcatggtgac agcggcggag gcgtactcgg cccctcacct gggtgagatg ggcggcgtca
     1741 ttgcgggcgc tcacggctcc cgtggggcgc gaacggtcgg ggaccggtgt atctgcgtgg
     1801 gcattccgcg tctcttctgt aagtggtgcc gcgcaatatc ggccagaggg atgtcgattg
     1861 cacgcgctac gaccgaaggg aagtatcggc gtcggcccgg ggagagcaca tggccgctag
     1921 tcctgagcgc gcagagcggg gagttgaccc cagcggcgtg tcattggtca gcatcaatgc
     1981 ttctttcgga gctgagggtg tcgtggtacc cgatacggtc accaacgacg atgtcgcccg
     2041 ccgccgcgca gatgacctgg acgctgaggc cgcgtactac cgccgccggg ccatccaaga
     2101 ggaacaggcc ttgggtcctg gctactacgt agacctgctc cggggcatgg ctaccggccg
     2161 ggccgcgctg gcccagcgga tacggaccgg gaagggatcg tcccagagat ccaactagac
     2221 aacgcctgcc agcggacagc gatgcccaga aattggcccg gcatgcgtct ctgtgccgtc
     2281 aacgccgtga tgaggaacca ggcgaaccat gcgacttgca ccccgagccg gatactagtg
     2341 tagcggaatc agtcgatcgt gggcgcttgc tgccccgcac cgcggcaggt cttcggggtt
     2401 gccgacgggg caacccggtg gacgccggtg tattccgacg acctcccgag gggttacctg
     2461 atcgcgccaa gcagggggcg ctttccagaa cagagcccct tgacgcgagg tggtccggtg
     2521 ctgataggtc gtcgggatag cacgaaggcc cacttcaaga agacacacct tcatgaacat
     2581 ttggatactt ttcggtcact taatgaccct gaacaacgcc gaacgaccga aacatcgagc
     2641 gtgcgtgatc gagaacaacc aggtcatggc atctatccgc aaccaatcga aacagcggtc
     2701 cgagaatcag cgggtttgag gtttgagtcc ctggcgcagc atcggcaggt ggcctgtaga
     2761 ggtcggctgg gccccacggg agagggcccg gccggcggga gagtacgtag ctatcagagg
     2821 ggagaggttg taggtcgctg acgaaatacg ggttggtgtc ctcatcaggt gtggccttcg
     2881 acaccgtcgc tgggtggatc gagcagcacg acgcgtgggc gggaccttcc ctggccgtag
     2941 ttcacccggt cggcgtcgca catgacgtat ttaccgggtg ttcgctgccc tcctgtgttc
     3001 tgggttgcta gtggtgggtc ggcgtaggaa gggaacgtca cgatgaccaa gctgggggtg
     3061 ggtcaaggta gcggctatcg ccgagcagct gccctgatgc caccacgctg gctgcgggcg
     3121 gtccccccgg tgtggtgggc gctggtgggg tggtgtgcag gctctccggt gggctacggc
     3181 ctgaccggat cagtgaccgg cggccctgaa ccgctgggtt cgggttcggg caggagtacc
     3241 gcggccggtc tcggcggtgg cgctaccccg tggggggtgt cggtggcgcc accgcctgtc
     3301 ttgctgcctg tggagccggc gcccgccgcg agcgcagaat cccgcaagca cagccactcc
     3361 ttcgcgaccg ctacccgcaa gcgggtagtg ctgctgccac acgccccgag cgagcccacc
     3421 gacacccgac cgttccactg ccgcacaccg caatgactac gggcatgaac caatacggtt
     3481 tcccgccgca attctcgggc cgcccgatag tcgccactgc accacaaaca ccggacaaag
     3541 caccacatcc ttcagcccgc ccgatgcttt acctgcttcc ctacccccga cgtcgccgag
     3601 cacctcaacc agcaacaggg cgcgcggaag cctcggcctc cggcaggatc ggtgacgact
     3661 ttccggctct gagcatcgat cggttgcgat tgctcgggtg atcgcctcgc caagcgatgg
     3721 catcccatcg atctccccac caacgcctgg ggcaagctca gccggtagct gagaggggat
     3781 gttgccccca ggcaccgcgt ctgggcgcca ggccaacgcg atgcacacga atcccagcgt
     3841 gcaagatcga atcttgggcc gtcgtcgagc cgtcggacgt cgagaagtat tgagaaacct
     3901 tgagagatag cgagagcgtt cctgctggcc aaccgcgctg cctccctccg ttggcgcagg
     3961 tgaccaagtg ccgggcggac gagctggcct gtaagccgga tcctgtgcac cgggcgtctt
     4021 gcggcgtccc ggccggcggc catccatctc cgcctgccgt caccggcagg ctctagcggc
     4081 ctacccgcag gcatcgggcg ggccaccctc aatcgcctgc gcagcgcgcc gcaaccggcg
     4141 cgcctcttgg ccttgctcca ggtggggttt accgagccgt cccggtcacc cgggacgctg
     4201 gtggtctctt acaccaccgt ttcaccctta ccccgctcac gcggggcggt ctgttttctg
     4261 tggcactgtc ccgcgggtca ccccgggttg ccgttagcaa ccaccctgcc ctgaggagtc
     4321 cggactttcc tcgacgggcc cattccgagc ccgacgcgac cgcccgacca actcgtccgc
     4381 caccccagca tagatcatcg cagacctggg ttggtgtggc gccgtatgca gaggaacagg
     4441 cccgtcgctc cagaatgcgc ttgcaggggt catgacccca attcatcagc gagtagcgcc
     4501 aggcgctgaa ctccgcctgc cgatcgcggt tcttcggccg ctcacatctt ctccagcgca
     4561 tcgggtttgt ggacggcctg gccaccgctc ttgttactac gcaccaggta ctgcggctct
     4621 tcgctggacg cccgcactgt gcggcccccg gcctccgtgt cggcggtgat tttttggagc
     4681 acctcgcctt cagcgtgccc gccgtggctg cgccagcgaa ccttgtcacc tacgcgaaac
     4741 tcctgcgcca ttttgacccc tgtgcgtctc gtcggcacca cgcggagatc aggtacccga
     4801 cccgtccacc agcaaaccgg ggtataagtc ggttgagcgg agccgcagca ggccggtctt
     4861 gttcggttcg ggctagcgtg gcacctcgtg ccgtccgcca acctggccct gctggtcgtt
     4921 gcgggtgtcc tgtccggcat ggtcaatgcg ctggctggcg gtgggtcgct gctgctgttc
     4981 ccggcgttgc tggcggcggg actccctccg ctcgcggcga atgtcactaa ttcggtggcc
     5041 caatgccctg gctatcttgg tttcgcgctg ggcagccgcg gggagcttcg cgggcagcgg
     5101 agtcgggtcc tttccaccat gggggtcgcg gtgctgggct cgctggtggg cagcctcctg
     5161 ctgctcgtgc tacctgcgcc ggtgttcaac gcggtaatac ctgggctggt ggcgctagcc
     5221 agcctgctac ttggcgtaca accgtggctt gctcggtgga tcggggagcc agaatctcgt
     5281 aatccggacc ggtacgcagt actgctgcct gcggtgttca tcggggccgt gtacggcggc
     5341 tacttcggcg gagcactggg agtgctgctg atcgcggtgc ttgccctcac cgcgcatgac
     5401 gatctgcgga ggcttaatgc cgtcaagggc gtcctctcac tgatcatcag cgtggtcagt
     5461 gtgccagtgt tcgccattgg cgcgccggtg aactggttgg cggtcgcgct gctcgccccc
     5521 gccaccctgg tgggggggtt catcggcgcg aaacttgcgg gtcggctacc tgcctctgct
     5581 ctgcgggtcg gggtggttgt ggtgggcttg gcggtgtcga tctacctctt cctcaggtga
     5641 gcaggtacta acggcgccga cacagcgttc aacagggcgc gacatgcggg ggcgctaggg
     5701 cgcgacacgc ggcggctggg ggaggtggga agtgtcgttg acgagtctca cggtggcggg
     5761 gccgtcggga tagaactccg cgatcgacag tgatgcgaca tccagatgca atcggtacag
     5821 cagcgacggg ccggcatcca gcgccatccg cagcaacgac ttgatcggtg tgacatggct
     5881 gacgacgatc agtgtggcgc cgccgtgctc ggcgatcagc tgatcacgca ccttccgcac
     5941 cctccggtgc acggcatcca tgctctcgcc gcccggcggg ctcaccgagg tgtcggtgag
     6001 ccacctggtg tgcagatctg ggtcccgggc gctggcctcg gcgaaggtca acccctccca
     6061 ggcgccgaaa tcggtctcga tcagtccatc gtggacgtgc attggtacgc ccagtacgtc
     6121 ggacacggac ttcgcggttt gccttgctcg ccgcagtggt gaactgatga ccgccgtgac
     6181 gtcgtcgatg gtcgccagac gagcagccgc ggcagcggct tggcgctccc ccagctcggt
     6241 gagtggcagg tcaccgcgcc cggagtagcg gcgctgcgct gaatgctcgg tctgcccgtg
     6301 ccgcagcatc agcagccgag tcggggagcc agtcgcgccg gtccagtacc gcggagcctg
     6361 ggtcccccga gtttgggccg caggctcccg gctgaagccg gcctgggcat ccatggcctc
     6421 gttggccaac cgatcggcgt gcgcgttgcg ggcccggggc acccaggtat aggtcacctc
     6481 accgagctcg cgggccagcc cggctgcctc gctggccagc ggccgcaggt gaggttgctt
     6541 gatctgccaa cgcccgctca tctgctcgac gaccagcttg gagtccaacc tggcctcggc
     6601 accgaccgcg ccttccttga ccgcggcgcg aagcccggcg atgagacccg aatactcggc
     6661 cacgttgttg gtggtgcagc ccaacccccc ggaagtctca acgagtattt ccccggtgtc
     6721 cgcgtcgcgg accaccgccc cgtacccggc cggcccggga tttccgcggg aaccaccatc
     6781 cgcctcgatg atcactcgtc gggtcatagc ccggactccg gggtccgcac gagcacgacg
     6841 ccacactcct cacaccgcac cacctcgtcg ggggatgcat cccgcaggcg tccgatcgca
     6901 gtacggtcca gctccagccg gcaggcgccg caacgacccc cgcgtagcaa cgccgctcca
     6961 ctaccgttcc gcgcccggat ccgctcgtag agcgtcacca gttcagccgg taacccaccg
     7021 acgaggatcg tgcgctcttg gttgccctgc aactcggtgg attccagctc ggtcagggcc
     7081 tcatcccggc gacgagtcgc ctcgaggtga cgttgctcga tatccgccag cttcacccga
     7141 cgctgttcga ggtcggcgtc ggtcacctcg cgccgctcca tcacctcaag cagatcgtcc
     7201 tccagcacgg tttgccgacg ccgtagcgtt gccaactcgt gttgcagatc ttccagctgc
     7261 ttgcccgagg agatcgaacc agagtcgagt aggccgcgat ctcgatcttc ccgggcgcgg
     7321 acctggtcga tctcggcttc cagcttacga atgtcgcggt ccaggtcgga cgccatcgtc
     7381 tcggcggcca ccaacgagtc tcgaccggcc tgaagggcct tggtaacctc ctccagctca
     7441 gccaactcag gtaatgaccg gcggcggtgc gcggcgcggg tcagctcggc gtccaccgcg
     7501 gccaggtcaa gtagccggcg ttgtgcggcg ggatcggcat tcaccgcgag agcctcccag
     7561 atgattgtgc cgtgccgatc gtccagggat cggtgcgacg atacgaaacg tgaacgtcga
     7621 ccgtaccgcc gagcgccgcc gagagcaccg ccgcggcctg tgcacaccac ggatgctcgc
     7681 tggcccaatg ggcgatgtcc accagcgccg gaccaccggc ggccaggtgc tccgacgccg
     7741 ggtgatgccg caggtcggcc gtgacgaacg catcgacttc cgcggcgctg gccagcccaa
     7801 gcagcgaatc cccggcgccg ccacataccg ctacggttcg aacggcgcgc tgcggatcgc
     7861 ctccggcccg cacaccccac gcggtttcgg gcagagcggc gtgcacccgg tcagtgaaca
     7921 ctcgcaggga ttcgggctcg ggcaactcgc agatccgtcc gagcccggtt cgctcggctt
     7981 ccccgcgagg ctccagcact ccggtgacct gcaatcccag cgcgtgggcc agtgcgtcag
     8041 acacccccgg ataggccgaa tcggcgttcg tgtgcgagca gaacagccca accccggcgc
     8101 gcaccagccg gtgcaccaga ccgcctttcg gatcgtcggc gggcactccg tgcactccgc
     8161 gtagcagcag cggatggtgt gtcaccagca actgcgcgcc gcgctcgagc gcctccgcga
     8221 cggtatcgac gaccggatcg actgccacca gcacccgctg cacccgctcg gccggatcgc
     8281 cacagaccaa ccccaccgcg tcccagctag cggcgagtgt cggagggtat gcgacctcca
     8341 gcgccgcgac cacatcctgc acggtcgtag tcatcaggtc gctagcccgc gaaccgcgat
     8401 tcggttctgg atggcatcga cgatcatcgc aggctcgcgc gaagggcgtc gatgagccgc
     8461 gtggcgatct cgggaggtcg gaccgcaacg cgtaggtggt cgggggtgag gcccgggaag
     8521 gtgtcagcgc gtcgcactgc aatgccggcg tcgagcagtg cagtgcggac gcgctcacca
     8581 cctagcacgc gcagcagcag gaaaggtgcc gcagcgggct ggtggaccgt gataccaggc
     8641 agatcggtca gttggcggat catccattcc cgttgccgca cggtctgcgc agccgcagca
     8701 gcggcctccg cgatcgcggc cggggtgctg caggcccgtg ccgcctcgag caccagcgtg
     8761 ccgaccggcc atggcgggcg cggcgatgcg agccgggcaa gcagatcggg ggcccccagc
     8821 gcgtagccgg cccgcagccc tggcaacgcc caggttttgg tgagactgcg aaacaccagc
     8881 agacccgggg tggtctgatc ggttgccagt gattcaggtt cgccgggcac cgcgtcggcg
     8941 aaggcctcat ccaccaccaa cacccgtccc ggccgggcga gcgcgcgcac gacctcggct
     9001 ggatgcagca cggaagtcgg gttcgtggga ttgcccagca cgacgaggtc ggcccccgcg
     9061 ggaatccact ctggtctcag ctggtaggcg gcgtcggtga gcacccgccg gaccgggatg
     9121 ccggcccggc gcaatgccac ttcgggttcg gtgaatgacg gatgcacgac caccgcggac
     9181 cggggtgcca gcgccggcag gatggcaaag ccctccgcga caccacccag cacgagcacc
     9241 tcaccaggat cgcgaccatg cctagcggcc actgcgacac gggcagcagt gtcctgcgca
     9301 gccgaggggt aacggccgag cccgtccagt gccgcgatca gccgctcgcg caaccacggg
     9361 ggagcctggc caccgcgcac gtttaccgcg aagtcgagca gtcccggtgc agcgtcgacg
     9421 tcgccatggt ggctcagcaa ctgatccatg tggacatgca cgctagcggc tcggcgcccg
     9481 acgccgcagc gcaggttata cgcgcatcag ctcaggtgac acgctcaccg cgtgctgcgg
     9541 ctcgggcggt ccgaccacat cggggtgcag gatgtgcgca aggatctccg cgccatcgat
     9601 cacgcgcggg cctgggcggc tgaagtacga ggtcgcgtca actgcccaca cgttgcggtc
     9661 cttgaccgcg ggcagctccg accagccggc gggtagccgc gccctcggca gctgacggag
     9721 agtgtctgtt gcgtagaagc cgcaaggtgc gagcacaatc gcctccggcg cgtatgcgct
     9781 gatctccgcg gcactggtaa tccgggatgc ctcaccagcg gcggcgaaac ctgcgtcacc
     9841 acccgcgagg tcgacctgct cgggcaccca gtggccgggg gcgaagggcg gttccagcca
     9901 ctcgaggacc agggtgcgtg ggcggcgggt gacctgcgac agcgccaccg acagcacgtc
     9961 gaggcgggcg cgcaggccgt ccacgagcgc cgccgcctcg gcctcgcggc cggtcaactc
    10021 accaacggta acgatgttgg ccagaatgtc cccgatcgtg gccggctcta acgagacgat
    10081 ggtggcgtcg gtgtccagtc ggcgcgccgc ctgctgcacc gtgcggtagc tgaccgcgca
    10141 gacgtcgcag agctcctggg tcaagatcag gtcgggggcc agcatccgca gcaggtcctc
    10201 gtcgaggtcg tagatgcagc cgtgaccatc caactgcgag cgcaccgcgt ggtcgatctc
    10261 cgcactgctc atggtctggt gcgaaatgcg gctggcggtc agctggggct tgcgctcgac
    10321 accgctcggg tagtcgcact cgtgggtcac gccgac
//
LOCUS       DASVXZ010000679         2232 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1241850, whole genome shotgun sequence.
ACCESSION   DASVXZ010000679 DASVXZ010000000
VERSION     DASVXZ010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1241850"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2232
                     /locus_tag="VF788_14355"
     CDS             <1..>2232
                     /locus_tag="VF788_14355"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005447110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HEX8935341.1"
                     /translation="IPYAELHCHSNFSFLDGASHPEELVEEAARLGLDAIAITDHDGM
                     YGVVRFAEAARELGVRTVFGAELSLHLPAPQSGVPDPEGEHLLVLARDPEGYRRLSRV
                     ISDAQITGKEKGRPVYDLDAVAAAAGGHWVVLTGCRKAAVRRALEHGGPDAAVAQLRR
                     LIELFGRDHVVVELTANGLPDDTERNDALAVLAAADGLDTVATTAAHYTTPSRHRLAT
                     TLAAVRARRSLDEMDGWLPAAAAAHLRSGAEMAEKFARWAGAVERAAALGRECSFDLH
                     LVAPDLPLFAVPASHTGASHTEASWLRELTWLGAATRYGSYDERPGAYHQIEHELAII
                     AEKDFPGYFLIVHDIVAFCRRAGIFCQGRGSAANSAVCYALGITSVDAVAMDLLFERF
                     LAPDRDGYPDIDLDIESDRREEAIQYVYQKYGRDRAAQVANVITYRARSAVRDVARAL
                     GYSPGTQDAWSKQIDRWGPLGQARAETDIPEPVLALAAELEGFPRHLGIHSGGMVICS
                     RPVAEVCPVEWARMEHRSVVQWDKDDCAAAGLVKFDLLGLGMLSALHYAVDLVADHYR
                     HRVQLSDLQPTDPAVYAMLARADSVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIR
                     PGPIQGDSVHPYIRRRNGQEAWDYDHPLLANALRKTLGVPLFQEQLMQMAIDIADFSA
                     AEADELRRAMGSKRSTERMERLRGRLYEGMARHGIGEELAEKIYAKLLAFANFGFPES
                     HSI"
BASE COUNT          357 a          740 c          764 g          371 t
ORIGIN      
        1 ggattccgta tgccgagctg cactgccact ccaacttcag ctttctagac ggcgccagcc
       61 acccggagga gctggtcgag gaggctgccc ggttaggcct ggacgcgatc gcgatcactg
      121 atcatgacgg gatgtacggg gtggtgcgct tcgccgaggc agcccgtgag ttgggtgtca
      181 ggaccgtctt cggagcggaa ctgtccctgc atcttcccgc gccccagagt ggggtacccg
      241 acccagaggg tgagcacctg ctcgtgctgg cccgcgatcc tgagggttac cgcaggctgt
      301 cccgggtgat cagcgacgct cagatcaccg gaaaggagaa gggtaggccg gtctatgacc
      361 tcgacgcggt agcagccgcc gcgggtgggc attgggtggt gctcaccggt tgtcgcaagg
      421 cggcggtacg ccgggcactg gaacacggtg gtccggatgc ggcggttgcg cagctacgcc
      481 ggctgatcga gctgttcggt cgcgatcacg tcgtcgtcga gctcaccgcg aacggactac
      541 ccgacgacac cgagcgcaac gacgcactcg ccgtgctggc cgcagcggat gggctggaca
      601 ccgtcgcgac caccgcagcg cactacacca ccccatcccg gcaccggctg gccaccacgc
      661 ttgccgcggt ccgggcccgg cgcagcctgg acgagatgga cggctggctg ccggccgcgg
      721 cagcggcgca cctgcgatcc ggggccgaga tggccgagaa gttcgcccgc tgggctggag
      781 cggtcgagcg ggccgccgcg ctgggccggg aatgctcctt cgacctgcac ctggtggcgc
      841 cggacctgcc actttttgcc gtccccgcca gtcacaccgg ggccagccat accgaggcca
      901 gctggctgcg tgagctcacc tggctcggtg cggccacccg ctacggcagc tatgacgagc
      961 gtcccggtgc ctaccaccag atcgagcacg agctggccat catcgcggag aaggacttcc
     1021 ccggctactt cctcatcgtc cacgacatcg ttgcgttctg ccggcgggcc ggcatcttct
     1081 gccagggtcg cggttcggcg gccaattccg cggtctgcta cgcgttgggc atcaccagcg
     1141 tcgacgcggt ggcgatggac ctgctcttcg aacgattcct cgccccggat cgggacggct
     1201 accccgacat cgacctggac atcgaatccg atcgccgtga ggaggccatc cagtacgtct
     1261 atcagaaata cggccgggac cgcgctgccc aagtcgccaa cgtgatcacc taccgggccc
     1321 gctcggcggt gcgggacgtg gccagggcgc tgggctactc gcccggcact caagacgcct
     1381 ggagtaagca gatcgaccgg tggggaccac tgggacaggc cagagcagag accgacatcc
     1441 ccgaaccggt gctggcgttg gccgctgagc tggagggatt ccccaggcat ctgggcatcc
     1501 actccggtgg gatggtgatc tgctctcgcc cggtggccga ggtctgcccg gtggagtggg
     1561 cccggatgga gcaccggtcg gtggtgcagt gggacaaaga cgactgcgca gccgccggtc
     1621 tggtcaagtt cgacttgctg gggctcggga tgctctccgc actgcactac gcggtcgatc
     1681 tggtggccga ccactaccgg caccgggtgc agctgtcgga tctgcagccc accgatccgg
     1741 ccgtgtacgc gatgctggcc cgggctgatt cggtcggggt attccaggtg gagtcgcgcg
     1801 cgcagatggc caccctgccc cggctcaaac cgcgctgctt ctatgacctg gtggtcgagg
     1861 tggcgctgat ccgtcccggc ccgatccagg gtgactcggt acatccctac atccggcgcc
     1921 gcaacggcca ggaggcctgg gactatgatc acccgctgct agccaacgcg ctgcgcaaga
     1981 cgttgggtgt gccgctgttt caagagcagc tgatgcagat ggccatcgac atcgcggatt
     2041 tctccgccgc cgaggccgac gagttgcgcc gtgcgatggg ctccaagcgc tccaccgagc
     2101 ggatggaacg cctccgcgga cggctttatg agggcatggc gcggcatggg atcggcgaag
     2161 agctcgccga gaagatctat gccaagttgc tggccttcgc caatttcggt ttcccggaaa
     2221 gccactcgat ca
//
LOCUS       DASVXZ010000680         3314 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_703136, whole genome shotgun sequence.
ACCESSION   DASVXZ010000680 DASVXZ010000000
VERSION     DASVXZ010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_703136"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..914
                     /locus_tag="VF788_14360"
     CDS             <1..914
                     /locus_tag="VF788_14360"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEX8935342.1"
                     /translation="KVAAGVVDERGTILATAHRDTPAEDVAQIEDAIAAVVKELSNNY
                     DVDAVGVGAAGFIDAQRSTVMFAPHLAWRDEPLQASLQRRLGLPVVIENDANAAAWAE
                     FRFGAGRGGKHVVALTVGTGIGGGIVINGQLVRGQFGAAAEVGHVTVVPDGRRCSCGL
                     RGCWEEYASGRALVREARELARVSPGLASGLLRLARGRPENITGKMVTQAAQDGEIAA
                     LRCFDVIGTWLGRGLGGLAAVLDPAVFVIGGGVSAAGELLRAPALTAFRACLTGYGHR
                     PVAELRIAELGPQAGLVGAADLARISF"
     gene            1037..1351
                     /locus_tag="VF788_14365"
     CDS             1037..1351
                     /locus_tag="VF788_14365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935343.1"
                     /translation="MTLGWIGAHGGEGITGAQQVRARAVWIDLDIVFPLPAGHRRRVV
                     ADGLRLTGRVPGMLKRWVRGSRGEWYGVVWVPISDGAGDTRLTLDDQLVPAAALSPRP
                     AL"
     gene            1535..1942
                     /locus_tag="VF788_14370"
     CDS             1535..1942
                     /locus_tag="VF788_14370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935344.1"
                     /translation="MTEQQSGAARPPYPREPNVHSGGVQEPGSDRDLPPYDDRQKTGP
                     GTDKDALLEERGGVPSHETGPREVSQAERDGVGDTDMAPKGPHGVGQSTSTSGEDISP
                     ISEDAHREDRLDTGVSDEDQISGPAMHRGDQGG"
     gene            complement(2039..2509)
                     /locus_tag="VF788_14375"
     CDS             complement(2039..2509)
                     /locus_tag="VF788_14375"
                     /inference="COORDINATES: protein motif:HMM:NF023697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3618 domain-containing protein"
                     /protein_id="HEX8935345.1"
                     /translation="MSDGERQRLEEEQLKEEIVELRGELGETVEALVYKADIPARAKE
                     RGAELTERAIDRGAELTERAVDRGAELRQQAVERGNEFSAQAMEWYAKLKTQAAERGS
                     DLRDQAVTATERARQAVYQMPSDRWAKVACAGIALVTMMIIMRRIRTADLAQRT"
     gene            complement(2506..2922)
                     /locus_tag="VF788_14380"
     CDS             complement(2506..2922)
                     /locus_tag="VF788_14380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEX8935346.1"
                     /translation="MTIHEHHQPSGADASVGELVERLSAQVSALVRDEMALATAEMKR
                     KGAQAGVGVGIGGAGAVVAVLGLGVLAAAAVLGLAAVMAGWLAALIVGVALLALAGVI
                     SAFGITRLRNSAPPVPEQAVQSTKQDIETVKESMHR"
     gene            3170..>3314
                     /locus_tag="VF788_14385"
     CDS             3170..>3314
                     /locus_tag="VF788_14385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6328 family protein"
                     /protein_id="HEX8935347.1"
                     /translation="MSGSPEYGPEQLARNINDLLQELRVALAGVQLLFGFLLSIIFTD
                     AYRR"
BASE COUNT          532 a         1078 c         1103 g          601 t
ORIGIN      
        1 cgaaggttgc ggccggtgtc gtggacgagc gcgggacgat cctcgccaca gcacaccggg
       61 acaccccagc cgaggacgtg gcccagatcg aggacgcgat cgcggccgtg gtgaaagagc
      121 tcagcaacaa ctacgacgtc gatgcggtgg gcgtgggagc ggccggcttc atcgacgcgc
      181 agcgctcgac ggtcatgttc gccccgcacc tggcctggcg tgatgagccg ctccaggcat
      241 cgctgcagcg ccggctgggg ttgcccgtag tgatcgagaa cgacgccaac gcagccgcct
      301 gggcggagtt ccgcttcggc gcggggcggg gtggtaagca cgtggtggcc ctcacggtgg
      361 gaaccggcat cgggggtggc attgtgatca acggacaact ggtgcgtggc cagttcggtg
      421 cggcagccga ggtcggtcac gtcaccgttg ttccggacgg gcggcgctgc agctgcggtt
      481 tgcgggggtg ctgggaggag tacgccagcg gtcgggcact ggtgcgagag gcccgggagc
      541 tggcccgagt ctcacccggg ctcgccagcg ggttgttgcg gctggcgcga ggtcgacccg
      601 agaacatcac cgggaagatg gtcacccagg ccgcgcaaga cggtgagatc gcggcattgc
      661 ggtgcttcga tgtgatcggg acgtggctgg ggcggggcct gggcgggctg gccgcggtcc
      721 tggaccccgc agtgttcgtc atcggtggcg gcgtgtccgc agcgggtgag ctgctgcgcg
      781 ctcccgcgtt gaccgccttc cgcgcctgct tgaccggcta cgggcaccgg ccggtggccg
      841 agctgcggat cgcggagctg ggtccccaag ctggtctggt cggcgccgcc gatctggccc
      901 ggatctcctt ctagccgggc ggccgacgcg ccacctggac atgttgcata tctagccggg
      961 ttcagcggac catggttgct ggacagagcc gcgctccccc gcgctcacga taagacgagt
     1021 cgatcaggga gcaggcgtga cgctcgggtg gatcggcgca catggcggtg agggcatcac
     1081 cggtgcccaa caggtgcgtg cccgggcggt atggatagac ctggatatcg tgtttccgct
     1141 gcccgccggt caccgcaggc gggtcgtcgc cgacggtctg cgccttactg gccgcgttcc
     1201 cggcatgctc aagcgttggg tcaggggctc acggggcgag tggtacggcg tggtgtgggt
     1261 gcccatcagt gatggcgccg gagacactcg gctgacccta gacgaccaat tggtcccggc
     1321 cgccgcgctc agtccaagac ctgctttgta gtagggcggc ctcgacgcag ggagctgatt
     1381 tggagtagct atcgcggcgg ccggatgatc ggtacggtga cgtttgccac cggcgccgat
     1441 cgggtaaccg agcagaggcg gatccgcctt ggtgatcgac cggcggcttc gaggtccacc
     1501 agtgtcgatg gaagtcgata ggaaggagcc cattatgact gagcagcaat caggagcagc
     1561 gaggcctcca tacccgcggg agccgaacgt tcactccggg ggcgtgcagg agcccggctc
     1621 tgaccgagac ttgcctccct atgatgaccg acagaagacc gggccgggca cggacaagga
     1681 cgctctgctc gaggaacgtg gtggggtacc ctcccacgaa accggaccgc gggaagtttc
     1741 ccaagccgag cgtgacggtg taggtgacac cgacatggcg ccgaagggcc cgcacggagt
     1801 gggccaatcg acctccactt ctggtgaaga catttcgccc atatcggaag acgcgcaccg
     1861 cgaggaccgg ttggataccg gcgtttctga cgaagaccag atcagcggac cggcgatgca
     1921 ccggggtgac cagggcggct gagtttcccg ttcccctgcc tcagcgcttg attccagaag
     1981 caccatcgcc ccgcctcttg gaggcggggc gatgtgtgct gtccacattg cgcgccgatt
     2041 acgttctctg cgcaagatca gcagtgcgta tccggcgcat gataatcatc atggtgacca
     2101 gtgcaatccc cgcacaagca accttcgccc atctgtccga gggcatctgg taaacggctt
     2161 ggcgagctcg ctcggtggcg gtgacggcct ggtcgcgcag gtcactgccc cgttcggcgg
     2221 cctgagtctt taatttagca taccattcca tggcttgggc gctgaattcg ttgccacgtt
     2281 cgaccgcctg ttggcgcaac tcggcgcccc gatcaacggc tcgctccgtc aattcggcgc
     2341 cccgatcgat ggctcgctcc gtcaattcgg caccacgttc tttagctcgg gccggtatat
     2401 cggccttata caccaaagcc tccaccgttt cacctagttc gccacgcagc tccacaattt
     2461 cttccttgag ttgctcttcc tcaagccgtt ggcgctcgcc gtcactcatc ggtgcatact
     2521 ctccttcacc gtctcgatgt cctgcttggt gctttgcact gcctgctcgg gcaccggcgg
     2581 tgccgaattg cgcagccgcg tgatcccgaa tgccgaaatc accccggcga gcgccaagag
     2641 agctaccccg acgatcagcg cggccagcca gccggccatt acggccgcca ggcccagcac
     2701 tgcggccgcg gccagcacac cgagccccag cactgccaca accgccccgg ctccaccaat
     2761 cccgactccg acgccggctt gggcaccctt gcgtttcatc tcggcggtag ccaacgccat
     2821 ctcatctcgc accagcgcgg agacctgagc ggatagccgt tccaccagct ctcctaccga
     2881 ggcgtcagca cccgagggct ggtggtgttc gtggatcgtc atccttcctc cttcagccgt
     2941 cgccagtcct tcttcgcagc tggcccggtg gacatacccg gcgccgggtc ggcttacccg
     3001 tgctccccgt cacctatcgc ctcgccgcgg cgatgccctc atcggtgtca gcggtggtca
     3061 tctcatctgg tagcgcacaa aataggcctc cggcctgcga cgagtgctgc ggaacaccgc
     3121 aggccagctg tgatgaagct cgatcctgca gcaggtcgcg aggtggcata tgtccggttc
     3181 ccccgagtat ggcccggagc agttggcccg gaacatcaat gacctgttgc aggaactgcg
     3241 agtcgcgttg gccggtgtcc agcttctgtt cggcttcctg ctctccatca tttttaccga
     3301 tgcctatcga cggg
//
LOCUS       DASVXZ010000681         9417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_754587, whole genome shotgun sequence.
ACCESSION   DASVXZ010000681 DASVXZ010000000
VERSION     DASVXZ010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9417
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_754587"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /locus_tag="VF788_14390"
     CDS             <1..765
                     /locus_tag="VF788_14390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEX8935348.1"
                     /translation="QTILNAAVDDERIRKNPCNASSVRKPQIPLRKVKPWPFEWVHEV
                     HDALSDRYRVTVPLGAGVGLRQGEVFGLAVDDVDFLGKTVHVLRQVKIVGKRPCFGPP
                     KGGKIRDVPLPDSVGLALAQHIERYPPVAVTLPWQEPAGKLVTARLIVYSRDRTPAWR
                     PVFNQWTWKPALSRAGVPSARENGFHALRHFYASTLLDAGETITALAAYLGHADPAFT
                     LRVYTHLMPASEERTRRAVDGVFGPASPRSDGMVTA"
     gene            1333..2415
                     /locus_tag="VF788_14395"
     CDS             1333..2415
                     /locus_tag="VF788_14395"
                     /inference="COORDINATES: protein motif:HMM:NF022995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoglobin family protein"
                     /protein_id="HEX8935349.1"
                     /translation="MTIGSEEVHEVDEYDLLVSPEFAPLAEFAGFGEYEATVIQDTGS
                     VIAEFTDRVPAAIATYLTTRSESASLIGRAGQSISEPTIKEWLHRTITGPFDGGLASY
                     IREISHLGENKVTFPGVQTPLPPQLVLALTAWLQGQILQALGKTCDVATVSAAGAAWM
                     NQFMLQLGIILEPTLTAPECPLGSHEAAEFHPYTEFAGFGPKEHLILRKTGPLLGPAA
                     GGVVTLAYDYLLSRPESAGYFQDASHLTQRKMTLKAWWTKSTTKPMDGAFHGYMSRVA
                     DAHVKGGGTHPHVVIPADLTIALMGWVQMRVMTALNTIAPAANGDYVFGKLPEPPEAA
                     EIGEAWMRMLTLQLGILLKPYLSAAT"
     gene            complement(2523..3431)
                     /locus_tag="VF788_14400"
     CDS             complement(2523..3431)
                     /locus_tag="VF788_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003067408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8935350.1"
                     /translation="MSAALGPDPSHGSGRVSWTAGAVARLLGVPASTLRSWHRRYGIG
                     PTGHHAGRHRRYTDTDIAALARMQHLITGGMSAESAAHLTHLHPGALETTADPPGRPA
                     ELLTAAFRLDVDRVLSILNTHLITHGVIATWDELCRPALTELTRRSGPDDVDQCIDVE
                     HLLSWAITTTLHRAPVPPAPSGPPVLLACADREYHTLPLEALRAVLAQQAVPTRTLGA
                     SAPTTALHHALHRAPQPPVALVLWAHTTDTADPDALRSLADTGVTMIAAGPGWDPNAL
                     PERVAHPASLRAALDLLSPPPQRDRS"
     gene            complement(3524..3988)
                     /locus_tag="VF788_14405"
     CDS             complement(3524..3988)
                     /locus_tag="VF788_14405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8935351.1"
                     /translation="MSTITESVDVGVDVSTAYNQWTQFESFPQFMEGVEEIRQIDDTH
                     THWVTSIAGVTREFDATITEQNPDERVAWRSDEGPNHAGVITFHRLDDTTTRVTAQMD
                     IEPEGFAENAADKLGILDRRVKGDMRRFKEFIESRGGRETGAWRGEVERPGG"
     gene            4205..4561
                     /locus_tag="VF788_14410"
     CDS             4205..4561
                     /locus_tag="VF788_14410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="This anti-anti-sigma factor, or anti-sigma factor
                     antagonist, belongs to a family that includes
                     characterized members SpoIIAA, RsbV, RsfA, and RsfB;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0045152 - antisigma factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HEX8935352.1"
                     /translation="MRSDLLHVYGEQIGDQIVVHVVGEVDLTTAPLLDRALSRATATP
                     TTRWVVVNLTRVDFFGAVGLTVLLTATRHGYATGVAVVVVAQPGQPAHRTITITELHR
                     RLALIDSPDHALSNSR"
     gene            complement(4644..4787)
                     /locus_tag="VF788_14415"
     CDS             complement(4644..4787)
                     /locus_tag="VF788_14415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935353.1"
                     /translation="MASLFNKIRQFLNSPQGRRMIDQGRQYASDPQNRAKLRELLARR
                     RKR"
     gene            4888..7425
                     /locus_tag="VF788_14420"
     CDS             4888..7425
                     /locus_tag="VF788_14420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935354.1"
                     /translation="MADVGRLERPDVARLDSRPWDLGGTLDELADNTDINACSDKVSL
                     GLEAPGGFSGADLVSPAQAVAAEALVDQRFRSGEPTEFRIHGVSGSDGPTMLQHPHVV
                     QVAGKSPTAIYRRWAPGGRGGLSVPWPLEAYSWGGLTERPLAAASWIVLTPFMLYNVA
                     FFMLPAGGAKSGHHRWARRIMRLLALAATVQLVNGAVIVLVSTIGWQNAAMRSGNPSW
                     WIGWYTRWDAGPRIGLALAVVGGIVGGLWLASVRTAHRYEKREMSVSAGGEHDWKLRK
                     PGFWHGAIVVTRQRNLHVGAAFAFAALSVALLPSRHEVWRVVEVLAATIVLVVAVAAM
                     ATSAVDREHQLDDRGSASRSRFRAVAGAGVLVLVATAVSSCWMLDRTGQSSVAPALVN
                     GTRAVLAVQSVLLIGLVITVWVLLRSEESQRASDWRPFLGGWLTPLVSLLAVLLGGLL
                     SAATNLAVARLFGQPSGVHLPAERPTSSTLFVPDEAFAFAIGMVATLPALLIAGLMLW
                     RAYGRKIRQLTSDDEVRAWYPESAQAPGDAVQQVTRAWALASLTDRVDVLVAMVGLSW
                     AAGVTAVEVAALLALSQAVALSGVIDVLVTFGVAVSAGTAIVLVGMLRSTYTNSGRRR
                     VVGALWDVATFWPRATHPFAPPCYAEQAVPEIVDRVVLLTGERSDHPAQPATELLPPP
                     AVCPSPVLITGYSQGSLIAPAVVAQLPPRTIDKVALLTLACPFRRLYGRAFPAYFSRE
                     YAVELNELLMNGSTPESDGEQAPREGKWRNVVRHTDYIGSWIFSPPGKPGQQLHQDVI
                     DVACSDPPSLCLGPGGTLAPIHYHSDWWQDPLTHLYARRLIEQLKGC"
     gene            7635..7850
                     /locus_tag="VF788_14425"
     CDS             7635..7850
                     /locus_tag="VF788_14425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8935355.1"
                     /translation="MGIFDKVKDKAEQFIGEAKEKIGQMTGNESLENAGKRDQLSAEA
                     KEAGHDLRDKAAGAVHDVKDGLSGDKE"
     gene            8143..8343
                     /locus_tag="VF788_14430"
     CDS             8143..8343
                     /locus_tag="VF788_14430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3072 domain-containing protein"
                     /protein_id="HEX8935356.1"
                     /translation="MANASMGSPEKDPEDWVTRDEPLTGPQRSYLETLAREAGEDVPA
                     GLTKAQASELIDRLQEKTGRGR"
     gene            9067..>9417
                     /locus_tag="VF788_14435"
     CDS             9067..>9417
                     /locus_tag="VF788_14435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005458234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEX8935357.1"
                     /translation="MPLCPADVHNVAFSNPPIGKRGYHAAEVDAFLDLVEAELARLIQ
                     ENTDLRGRVEQLDRQRSAVPAASGRDRRLLELPGPVTSVPPTMRTHTSSGSGQPDQAA
                     KVLGLAQQIADQLTL"
BASE COUNT         1690 a         2908 c         3109 g         1710 t
ORIGIN      
        1 cagacgatcc tcaacgcggc cgtggacgac gaaaggatcc gcaagaaccc gtgcaacgca
       61 tcctcggtac gcaagccgca gatcccgctg agaaaagtca aaccatggcc gttcgaatgg
      121 gttcacgaag tgcacgatgc actgtcggat cggtacaggg tcacggtgcc gctcggcgct
      181 ggcgtcggtc tgcgacaggg cgaggtgttc ggcttggccg tcgatgacgt cgacttcctc
      241 ggcaagaccg tccatgtcct tcggcaagtc aagatcgtgg gaaagcgacc gtgcttcgga
      301 ccgcccaaag gcggcaagat ccgagacgtc ccgctacctg actccgtcgg cctggcgctc
      361 gcgcagcaca tcgagcgcta cccgccggta gccgtgaccc tgccgtggca ggagccagcc
      421 ggcaagctgg tgacggcacg attgatcgtc tacagccggg accgcacgcc ggcctggcgc
      481 ccggtgttca accagtggac gtggaagccg gcgctgtccc gggcaggtgt gccctccgcg
      541 cgtgagaacg gattccacgc gttgcggcac ttctatgcct ccacgttgct cgacgcgggg
      601 gagaccatca ccgcgctggc tgcctacctc ggacatgccg accctgcgtt cacactgcgg
      661 gtctacacgc acctcatgcc agctagtgaa gagcggacac ggcgggccgt cgacggggtc
      721 tttgggccgg cgtcgccgcg ctccgacggc atggtgacgg catgacgacg taagtgatct
      781 ccttcgtcgc agctcagagc acgtttcctg cgctgaacta ccgcttctag tggacggttg
      841 gcggttacca gtgggcagac ccgtcggggg acagcttccg caccggaatg gtgtcctcgg
      901 tacttcaccg atgctgatgg ctgaccggta cggaccggac tggacctgcg aactcggtgt
      961 ttcgcgcgtt catctcggcg accaggtcat cgagcacgtt tatccggcct gaccgcagct
     1021 ccagggccct gaccgcaagt tgtgatcagc cttcccagct gaggacgcac gtatgagcat
     1081 cagtgcgctg tcagtacggc cggtatgtcg attatgttaa gtgtagagca cttgattgtt
     1141 acttgagtta cgaactgggg ccctcacaac gtggggctta acgtgtgtga gcgagtagtt
     1201 acagcagtcc aacgctggtg taaccagcgt tccgttaagg cctaatagcg tcagcgtaga
     1261 ggcacctggc ctccattatg tctacgtttt attcttccac ggctgggtcg ccgcatgagc
     1321 aggggagata tcatgactat aggcagcgaa gaagtccatg aggtcgatga gtacgacctg
     1381 ctggtctcac cagagttcgc tccactggcc gaattcgccg ggtttggaga gtacgaggca
     1441 acggtgatac aggacaccgg tagcgtcatc gcagagttca ccgaccgcgt cccagcggca
     1501 atagctacat acctcaccac acgttcggaa tctgcgtccc tgataggtcg ggcaggccaa
     1561 tcgatcagcg aaccaacgat caaagagtgg ttgcatagga cgatcaccgg cccgtttgac
     1621 ggtggcctgg cctcctacat acgagaaatc agccatctcg gggaaaacaa agtgactttc
     1681 cccggagtgc aaacaccgct tccgccccaa ctagtcctgg cgctcaccgc ctggttacaa
     1741 ggacagatcc tccaagccct aggcaagacg tgcgacgtcg ccaccgtctc cgccgccggg
     1801 gcagcctgga tgaaccagtt catgctgcaa ctcggcatca tcctggaacc cacattgaca
     1861 gcgccggaat gccccctggg ctcccatgaa gccgccgagt tccatccgta cacggagttc
     1921 gctggatttg gccctaaaga gcacttgatc ctgcgcaaaa ctggccccct tctcgggccg
     1981 gcagcaggtg gcgtagtgac ccttgcctac gattacctcc tctctcgacc agaatcggcc
     2041 ggatactttc aggacgcctc ccatctcacg caacgaaaaa tgaccctcaa agcctggtgg
     2101 accaaaagca ccacgaaacc catggacggc gcgttccacg gttacatgtc tcgagtcgcc
     2161 gatgctcacg tcaagggcgg tgggacacac ccccatgtcg tcattccggc tgatctgacc
     2221 atcgcgctca tgggatgggt tcaaatgaga gtcatgaccg ccctgaacac tatcgccccc
     2281 gcagccaacg gagactatgt cttcggcaag ctccccgagc caccagaggc cgccgaaatc
     2341 ggcgaagcgt ggatgcgaat gctgaccctc cagttgggga tcctcctcaa gccctacctc
     2401 agcgcagcca cctaacccaa ccatgcccca ccacaggtga tcatcgtcaa cgagtcgtca
     2461 gcgaacggca tgcgaccagt ccacacgggc cgatccgcac cggacgccca aagcacacgc
     2521 cactaggaac ggtcgcgctg tggtggtggg gagagcaggt caagtgcggc gcgcaggctg
     2581 gcgggatggg ccactcgctc gggaagtgcg ttggggtccc agcccggccc ggccgcgatc
     2641 atggtgaccc cggtatcggc gagggagcgc agcgcatcgg ggtctgcggt gtcggtggtg
     2701 tgtgcccaga gcacgagcgc gaccggtggt tggggggcgc ggtgaagggc gtggtggagg
     2761 gcagtggtgg gagcggaggc gccgagggtg cgggtgggca cagcctgctg ggcgagaacg
     2821 gcgcgtagtg cctccagggg caaggtgtgg tattcgcggt cggcgcaggc cagcagtacc
     2881 ggcggcccgg atggcgcagg tggcacgggc gcgcgatgca gggtcgtggt gatggcccag
     2941 gacagcaggt gctccacatc gatgcactga tccacgtcgt ctgggccgga tcggcgggtc
     3001 agctcggtca gggcggggcg acagagctcg tcccaggtgg cgatgacgcc gtgggtgatg
     3061 agatgggtgt tcaggatgga cagcactctg tcgacatcga gccggaatgc ggcggtgagt
     3121 aactcggctg gcctgccagg cgggtccgct gtggtttcga gtgcgccggg gtgaaggtgg
     3181 gtgaggtggg cggcggattc ggcgctcatg ccacctgtga tcagatgctg catgcgggcc
     3241 agggctgcga tgtcagtgtc ggtgtagcgg cggtggcggc cggcgtggtg gccggtgggc
     3301 ccgatgccgt aacgacgatg ccagctgcgc aatgtcgagg ccggaacacc aagcaaccgg
     3361 gcgaccgcgc ctgcggtcca cgacacccgg cccgagccgt ggctcgggtc ggggccgagg
     3421 gctgcgctca tagcttcatg gtcgctgatc cgagcgcgat ggtgaacgcg cgacgcgcgc
     3481 gtgtcgagcg tcgccaacgc cggagatgac ggagtcgcag cgattagccg ccggggcgct
     3541 ccacctcgcc gcgccaagca ccggtctcgc ggccaccgcg ggactcgatg aactccttga
     3601 accgccgcat atcccctttg acacgccggt cgagaatacc tagcttgtcg gcggcattct
     3661 cagcgaatcc ttcaggctcg atgtccatct gggcggtgac ccgggtggtg gtgtcgtcga
     3721 ggcggtgaaa agtgatgacc ccggcgtggt tcgggccctc atcggagcgc cacgcaaccc
     3781 gctcgtcggg gttctgctcg gtgatggtgg cgtcgaactc ccgggttacc ccggcgatgc
     3841 tggtcaccca gtgggtgtgg gtgtcgtcga tctgacgtat ctcctcgacg ccttccatga
     3901 actgcgggaa ggactcgaac tgggtccact ggttgtaggc ggtggacaca tccaccccga
     3961 cgtcgacgga ttcggtgatg gtgctcatga cactccttga cgtgatgagg gttcttcgga
     4021 cgggcagcaa cggtcgagcg gggcctcgga tgtcgctggc tgccacgggg ctggagtacc
     4081 ccggaaatcg atgacaaaac gatgcacgcc agctctctgg cggctacagt acgaaccggg
     4141 ctggtgtggt cgagcggcca gccgcggtga cggtgagcct cttggtgcgt tcggaggacg
     4201 aataatgagg agcgacctgt tgcacgtgta cggcgagcag atcggcgatc agatcgtcgt
     4261 acacgtcgtc ggggaagtcg acctcaccac cgctccactg ctggatcggg cactaagcag
     4321 ggcaacagcc acgcccacga cacgatgggt cgtggtgaac ctgacgaggg tcgacttttt
     4381 cggcgccgtc gggctgactg tgctgctcac cgcaacccgc cacggctacg ccaccggcgt
     4441 cgcggtcgtc gtggtcgccc agcctggcca gccagcacac cggacgatca ccatcaccga
     4501 gctgcaccgc agactagcgc tgatcgattc tcccgaccac gctctcagca acagccgata
     4561 actgcacgtt ccacggccac cagcgctcga ggcactgcga agccgctagc tcaccggagg
     4621 gtccgctgac ggcatccggg gagtcagcgc ttgcggcggc gagcgagcag ctcgcgcagc
     4681 ttcgcgcggt tctgcgggtc gctcgcgtac tggcgtccct gatcgatcat tcgacgtccc
     4741 tgagggctgt tcaagaattg ccggatcttg ttgaagagcg aggccatcgc ggctccttgg
     4801 gcgtaggtgc tgtcaggcta accgacgttc cgcgctgaag atcgatccgg gtgtccaccg
     4861 tcagcggccg ttgacacgct gggggacatg gccgatgttg ggcgactaga acgaccagac
     4921 gtggcgaggt tggacagcag gccttgggat cttgggggca ctttggacga gctcgccgat
     4981 aacaccgaca tcaacgcttg ttcggataag gtctcgctgg gtctcgaggc gccagggggc
     5041 ttctcgggtg ctgacctggt cagcccagcg caagccgtgg cagctgaggc gttggtggat
     5101 caacgattca ggagcgggga gcccacggaa ttccgtattc acggggtgtc cggctccgac
     5161 ggtcccacga tgctgcagca cccccacgta gtccaggtgg ctggcaagtc accgacggcg
     5221 atctaccgtc gatgggctcc gggcggccgc ggcggattgt ctgtgccctg gccgttggag
     5281 gcctattcat ggggagggct gacggagcgg ccgctggcag cagcctcctg gatcgtcttg
     5341 acaccgttca tgctctacaa cgtcgctttc ttcatgctgc cagctggcgg ggccaagtcg
     5401 ggtcaccacc ggtgggctcg gagaataatg cggctgcttg cgctcgccgc gaccgtccag
     5461 ttggtcaacg gcgcggtcat cgtgctggtc agcacgatcg gatggcagaa cgccgcgatg
     5521 cgaagcggca acccgagttg gtggattgga tggtatacgc gctgggatgc cggtccgcgc
     5581 attggcctgg cgttggccgt ggtcggggga atcgtcggcg gcttgtggct ggccagcgtg
     5641 cgaacagcgc atcggtacga gaaacgcgaa atgagcgtga gtgccggagg tgaacatgat
     5701 tggaagctga ggaagccggg tttctggcat ggcgccatcg tcgtgaccag gcagcggaac
     5761 ctccatgtcg gtgcggcgtt cgccttcgcg gcgttgagcg tggcgctact gccaagcagg
     5821 cacgaggtgt ggcgagtcgt cgaggtgttg gccgcgacga tcgtgcttgt ggtggctgtc
     5881 gcagcgatgg ccaccagcgc ggtggatcga gagcaccagc tcgacgaccg cggtagtgcc
     5941 tcgcgcagtc gttttcgcgc ggtggcgggt gccggtgtgc tggtgctggt tgcaaccgcc
     6001 gtgagctctt gttggatgct cgaccggacg ggccagtcat cggtcgcgcc tgcactggtg
     6061 aatggcacca gggctgtcct ggccgttcag agcgtcctgt tgatagggct tgtgatcacg
     6121 gtttgggtgc tgctcaggtc cgaggagtcg cagcgcgcga gcgactggcg gccgttcctc
     6181 ggcggatggc taaccccgct ggtgtccctg ctcgcggtgc tgctcggtgg cctgctctcg
     6241 gcggcaacca atcttgccgt agcccgactg ttcggtcagc cgagcggagt gcatctcccg
     6301 gccgagaggc caacgtcgtc gacgttgttc gtgccggatg aggcgttcgc cttcgcgatc
     6361 ggcatggtcg ccacgttgcc ggctttactg attgcggggt tgatgctgtg gcgtgcctat
     6421 gggcgcaaga ttcgccagct caccagcgat gatgaggttc gtgcctggta cccggagtca
     6481 gcgcaggcgc ccggcgatgc cgtgcagcag gtcaccaggg cctgggcgct cgcctcgctg
     6541 accgaccgtg tggacgtgct cgtcgccatg gttgggctta gctgggccgc cggtgtcact
     6601 gcggtggagg tggcggcgct attggccctc tcccaggcgg tcgcgttgag tggcgtgatc
     6661 gacgttctgg ttaccttcgg tgttgctgtg agcgccggga ccgcaattgt cctggtgggc
     6721 atgctccgct ccacctacac caactccggc cggagacgcg tggtcggtgc cctgtgggat
     6781 gtggccacct tttggccacg agccacccat ccattcgcgc cgccctgcta cgccgaacag
     6841 gccgtccccg agatcgtcga tcgagtcgtg ctgctcacag gcgagcgatc agaccacccc
     6901 gcccagccgg ctaccgagct gctgccccca cccgccgtgt gcccgagccc ggtgctgatc
     6961 accggctaca gccagggatc actgatcgcg ccggccgtcg tcgcgcagtt gccgccccga
     7021 acgatcgaca aggtcgcgct gctgaccctg gcctgtccct tccgtcggtt gtacgggcgc
     7081 gccttccccg cctatttcag ccgcgaatat gcagtcgagc ttaatgaact gctgatgaat
     7141 ggcagcactc ctgagtccga tggtgaacaa gcaccgcgcg aaggaaaatg gcgaaatgtc
     7201 gtccggcaca ccgattatat cggatcctgg attttttccc cacccggtaa gcccggccaa
     7261 cagctgcatc aggacgttat agacgtggcc tgctcagatc caccctcact ctgtctcgga
     7321 cctggtggta ccctagcccc cattcactac cactctgact ggtggcaaga cccgctcacg
     7381 cacctctatg ctcgccgact catagaacaa ctcaaaggtt gctgaggggt cccgcaccca
     7441 caccacgagg tcgcactatt tgtggggaca gcgcgaccct gcatgacctg ccgctagggc
     7501 aggcctggtg ccgttaccta tctgacatcc gatagggtgc tcgcgccgcc gctggcatat
     7561 gccagaggtt ggttcgggca cacctcgatt gcctgagcac tccacccgct ctacgatcac
     7621 aggagggaat tcaaatggga atttttgaca aggtcaaaga caaggccgag cagtttatcg
     7681 gtgaggcgaa ggaaaaaatc ggtcagatga ccggcaacga gagtcttgag aacgccggca
     7741 agcgcgatca gttgtcagca gaggccaagg aagccggaca cgacctacgc gacaaggctg
     7801 ctggcgctgt tcacgacgtc aaggacgggc tcagcggcga caaggagtag ccaggtcagc
     7861 tgctcgctcc gtgcgcgccg tcggctgcga cgtgcgatcg gggactgcgc acggtggcgc
     7921 ggtgcccctg cgtgggcaga tctgtccatt gatcgctgtc tgggaattcc aataatgcgc
     7981 tgcatgcggt tcccaggcag cgatcacggc gtggtctaca gacgccgtga tcggccgttc
     8041 cgtaaccgtc tacatctcgg ctctgctcca gggagcatgg caggaagtct cgccccggtg
     8101 ccgcactggt ttcaacacgg ccggttgggg taccagcgca gcatggctaa cgcatcgatg
     8161 ggctcgcccg aaaaggatcc cgaagactgg gtcacccgcg acgagccgct gaccgggcca
     8221 cagcgcagct acctcgagac gctggctcgg gaggcggggg aggacgttcc ggccggtttg
     8281 accaaggccc aagcgtctga actgatcgac cggttgcaag aaaagaccgg ccgcggacgc
     8341 tagaaccggt ccgcggccga cagctactgc tgcgacgcag tgacaagagg gctgtcgacg
     8401 aacactttgc cgacgggcgt cacgagaagc tcggctaatc gcctcatcga agactatgcc
     8461 gccaacgaca tcggggtcac caacgtggtc accgccaccg ttctggcacg gctgttcctg
     8521 tggcagggag cggatgaact cgacctgctc cgagctatgc cacaatcgcg gtccgttaca
     8581 ccggcacgct ggccactgga catgccattg accaccgcgc cgcgcagctg agcgtcccga
     8641 tctcgacgga gatctgggca caacggcaga cttgggtgtc cggcagcggc agttgcattg
     8701 atgtgaacag cgttcgcccg tgcaccaagt ggggcgccag acccatccgg cgccctcgaa
     8761 accccgataa accggacatc tgatgacctt tcgcatgctt tctgggcgag cgcgtgaagg
     8821 atcgctcaat gcgggcctac cccagcgcgg aagcgttctt gcatcggtac acgacgaatg
     8881 gaaattgcgt gttagccctt gcaatcgaat gcagcgtctg ccacggtaat cggatcggtg
     8941 tgcggtgaac cacccagagt agaaggtcgc atcgtgagtt tccacggact agcgtgccaa
     9001 agaccaccca cggtcgcgca acgaccgatg acgatccggt tttccacgag tgcgtgaggt
     9061 gatctgatgc cgttgtgtcc cgccgacgtg cacaacgtcg cgttcagtaa tccgccgatc
     9121 ggcaagcggg gctaccacgc agcagaggtg gacgccttcc tcgacctcgt cgaggccgaa
     9181 ctggctcggt tgattcagga gaacaccgat ctccgcggcc gggttgagca gctcgatcgg
     9241 caacggagcg ctgtaccggc cgcttccggg cgtgaccggc gcctgctgga gctgcctgga
     9301 cccgtgacct cggtgccgcc gacgatgcgg acacacacct cgtcaggtag cggtcagccc
     9361 gaccaagccg ccaaggtgct gggtctggcc cagcagatag ctgaccagtt gaccctc
//
LOCUS       DASVXZ010000682         2354 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_76766, whole genome shotgun sequence.
ACCESSION   DASVXZ010000682 DASVXZ010000000
VERSION     DASVXZ010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76766"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VF788_14440"
     CDS             <1..397
                     /locus_tag="VF788_14440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BRCT domain-containing protein"
                     /protein_id="HEX8935358.1"
                     /translation="AAAVREWFGVDWHREVVAKWRAAGVRMAEPLDDSVVRHLEGLSI
                     VVTGSLEGFSRDEAVEAIAVRGGRAAGSVSKKTAFVVVGDAPGSKYDKAVTLKVPVLD
                     EAGFRVLLNDGPEAARAVAVSPGEQGSPE"
     gene            complement(436..924)
                     /locus_tag="VF788_14445"
     CDS             complement(436..924)
                     /locus_tag="VF788_14445"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX8935359.1"
                     /translation="MPRPPPSGSPAQLTSWRWTSRRAHRRRAQAHHPLPECRLCPRDV
                     TTKIEMGRYFSWRAADYLDKHDQHAELVGAMNKIQVTEMMFDCVFKCMQIVGVSSLEA
                     RNGFGKLLRKASVLPIYDGGNMGMQRRRVHGILTDPMFNPRSSWKTTTSNSRSPTSRS
                     TR"
     gene            1658..>2354
                     /locus_tag="VF788_14450"
     CDS             1658..>2354
                     /locus_tag="VF788_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8935360.1"
                     /translation="MVGLAACSGGDAARGGGQGQTGTAFAACDASPNTCNSAEPGRLK
                     QGGQLTYAIEKNIPNWNLLSSEGNVLETGWVLAGVLPRAFITLPDLTVAMNNDLLDSV
                     KVTNTNPETVVYKIKANAVWSDGTPITANDFVYNWKVQNGRDCPNCTPATTTGYDQIQ
                     SVVGSDNGKTVTVTFSKPFTDWKQNWGSGSPIYPAHIAAQHGDIKTPQGLAAAYSWFG
                     KNVPMYSGGPFQID"
BASE COUNT          427 a          700 c          787 g          440 t
ORIGIN      
        1 cgccgccgcc gtccgtgaat ggttcggcgt ggactggcac cgcgaggtgg tggccaagtg
       61 gcgtgccgcc ggagtgcgga tggctgagcc gctcgacgat tccgtcgtgc gccaccttga
      121 gggactgtcc atcgtggtca cggggtcgct ggagggcttc tcccgggacg aggccgtcga
      181 ggcgatcgcg gtgcggggcg gccgggcggc cgggtcggtg tcgaaaaaga ccgcatttgt
      241 ggtcgtcgga gacgcacccg gctcgaagta cgacaaggcc gtgacactca aggtgccggt
      301 gcttgacgag gccggcttcc gtgtccttct caatgacgga ccggaggctg cccgagcggt
      361 cgcggtatca cctggggagc aggggagtcc tgaatgagca cgctgcccag tgttgtgatg
      421 ggcgagatca ggaaactagc gtgtcgatcg actcgtggga cttctcgaat ttgacgtagt
      481 cgtcttccat gacgagcgtg ggttgaacat cgggtcggtg aggatgccgt ggacgcgtcg
      541 gcgctgcata cccatgttgc cgccatcgta gatcggcagc actgatgcct ttcggagcag
      601 tttcccaaag ccgttcctgg cttccaagct gctgactccg acgatctgca tgcacttgaa
      661 cacgcagtcg aacatcatct cagtgacttg gatcttgttc atggcaccga ctagctcggc
      721 gtgctggtcg tgcttgtcca ggtagtccgc ggcgcgccag gagaagtagc ggcccatctc
      781 gatcttcgtg gtgacgtcac gaggacataa ccgacattct ggaagtggat gatgggcttg
      841 agcgcgccgg cgatgtgccc ttcgcgaagt ccagcgccaa ctcgtaagct gcgcgggcga
      901 ccccgacggc ggcggtcgcg gcaaccggcc ccgaccaggc gaagtttcgg ttgattacca
      961 ggtcgccatt gccctgcgca cctgggagga ggttcgccgc gggcatccgg gcgttgtcga
     1021 agaccacttc tgcattcacc gtcaggcggt ggccctcctt gagatgactt gcacgacacc
     1081 tcgggcgtgc cacgctcccc atgatcgccg acagcccttc ggtaccgccc atttccgagt
     1141 tcgtgcggac gatgacgcac tgcgcgttca cgccctgggc gtcccaaccc ggcgaggatg
     1201 gccagtactt ccggccgttg ataatgaagc tgtcaccgtc acgctgtttc gcggttgttg
     1261 ccgaaggtaa atacaacctc accgtccgcc gcaatgggcg atctggattc ccccgattct
     1321 gtcgcggtgt ctcgcaatct cgagttgcga cgtggtgcgg gcggcgcgcc ttgggcgacc
     1381 ttggccacgg ccgtttcaag atcgagtaca gagttgtctc ggtcgtatcc gccgtcgagc
     1441 ggtgcgccac cgatgtcatg gccacaggtg agcgccgcag gatgacgccg attcggttgg
     1501 tgagcctctc ggcgacgggg tggccggtac acggctgttc gggaagcagc gatatccgat
     1561 gacgcagcgg aggatcgagt gggcgtaggg tcaccgggcc atgggatgtc tgaggcgatc
     1621 agaaggacgg cgcgcggtcg cgctcatcgc aagtctcatg gtggggctgg ccgcttgcag
     1681 tggtggggac gcggcgcgcg gtggtggcca gggccagacg gggacagcgt tcgcggcctg
     1741 cgacgcgagc ccgaacacct gcaactccgc tgagcccggc aggctgaagc aaggtggcca
     1801 gctcacctac gccatcgaga aaaacatccc gaactggaat ctgctctcca gcgagggcaa
     1861 cgtgctcgag accgggtggg tgctcgcggg cgtgttgccc cgggccttca tcaccctgcc
     1921 cgacctcacc gtggcgatga acaacgacct gctcgactca gtgaaagtaa ccaacacaaa
     1981 tccggaaacg gtagtctaca aaatcaaggc gaacgcggtg tggtcagacg ggacgccgat
     2041 caccgcgaat gacttcgtct acaactggaa ggttcagaac gggcgggact gccccaactg
     2101 tactccggca accacgaccg ggtatgacca gatccagtcg gtggtcggtt ccgacaatgg
     2161 caaaacggtg acagtgacgt tctcgaaacc cttcacggac tggaaacaga actgggggag
     2221 cggttcgccg atttatcccg ctcatatcgc cgcgcagcat ggtgatatca agactccgca
     2281 ggggcttgct gcggcataca gctggttcgg gaagaacgtt ccgatgtact cgggcggtcc
     2341 cttccagatc gaca
//
LOCUS       DASVXZ010000683         3267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1293318, whole genome shotgun sequence.
ACCESSION   DASVXZ010000683 DASVXZ010000000
VERSION     DASVXZ010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1293318"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VF788_14455"
     CDS             <1..365
                     /locus_tag="VF788_14455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005449590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HEX8935361.1"
                     /translation="RGPSGAVVSALAACGQRSMTSYLLQSVVFVAVLAAFGGGLGDRL
                     GLVEIAILATVTWVLTVLLADSMSRRGYRGPAEVLLRRLTYGTPAAESPLIHVPSARL
                     PVPADQPAPSPRRWFARR"
     gene            816..1478
                     /locus_tag="VF788_14460"
     CDS             816..1478
                     /locus_tag="VF788_14460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935362.1"
                     /translation="MSYTPRRSPRGQGIALIVLGLLLLVTGVMLPYRLAGIPAIFVLG
                     CLILFAGIAVAIFGDAPPGRLSAGMEQRIRRRFEDDRSLNGSDQPRVGSPMMNIVLAV
                     VASIILTVIISAANQFISAQPTQSGWADVTVTGCTIKTELGTTTANADVRIVNHTSHP
                     ASYLVTVGLNNAHGDRIGVATAASNDLPSGRTVTVTGMGTTNTPSAPAGRCELADVMR
                     LP"
     gene            1653..2780
                     /locus_tag="VF788_14465"
     CDS             1653..2780
                     /locus_tag="VF788_14465"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEX8935363.1"
                     /translation="MSEVVDRSQVKRWSALLDDERDAAELYSRLAQVETGERRQIFEE
                     LAGIERRHATHWADKLRAAGVEVPATGRPTLRTRLIGAAARWFSTSAVLPIVERGERA
                     DAGMYDDEPDAAPGMAADERGHARTIAKLIDGAGPTPRQQIARREHWHRTDRSGSLRA
                     AVFGVSDGLVSNTALVMGFAGSGAARTAILLAGIAGLLAGAFSMAAGEYVSMSGQREM
                     YQREISLEAAELAEKPEEERAELVLLYRAKGLDRADAERLADRIMANPEVALDTLARE
                     ELGLDPDELGSPWSAALSSMLAFALGAFVVVLPYLIGGGLTTLLVAIGLAILALFTVG
                     AGLGVLNGRSALRSGLRQLAVGGLAAAVTFGVGHLIGTVVS"
     gene            2960..>3267
                     /locus_tag="VF788_14470"
     CDS             2960..>3267
                     /locus_tag="VF788_14470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8935364.1"
                     /translation="MDADVVVVGAGPTGLMLAGDLAEAGVAVTVLERRADESNVTRAF
                     AVHARTMEELEIRGLAGELAKTGTPINALRLFERVQIDLSRLPSQFNSLLITPQYETE
                     R"
BASE COUNT          533 a         1030 c         1102 g          602 t
ORIGIN      
        1 gccgcggccc gtccggggcg gtggtcagcg cgttggccgc ctgcgggcag cgatcgatga
       61 cctcttacct gttgcagtcg gtggtgttcg tcgccgtgct agcggcgttc ggtgggggtc
      121 tcggggaccg gctggggctc gtcgagatcg ccatcctggc caccgtgacc tgggtgctga
      181 ccgtgttgct ggcggattcg atgagccggc gcggctatcg gggtccggcc gaggtgttgc
      241 ttcgccggct cacctacggc acccccgcgg ccgagtcacc gctcatccac gtgccgtcgg
      301 cccggctgcc tgtcccggcg gatcaaccgg caccatcccc caggcgctgg ttcgcgcgcc
      361 ggtagtccgc atcgtggcaa ggccgatccg atagacgccc ttgaccaatc ggagattcca
      421 tgcggaattg cggtttgatt catttcgcgc cactttgggc tgcagtcggc gacggagtcc
      481 tggccggcac ggctcgtacg gtagcccggg gtggtggcgg gttgtactca tgggcatccg
      541 tggcagcagt ccactgcggc gcgccttcag cacgcctggg gacggtcacg gtttcttcat
      601 cggcctcgat gcacagcgtc atgctcccgg cgatcgtaac gggtagagga atcgagacga
      661 cacatggacg gcagccgaca gaaagtgtgc aagccatcac tacccatgaa tatgctacgc
      721 caatggcgtg acatgcgcat atgttaaggt cacgttgcga atttttcaca cgatcaatta
      781 ttgcaagctt cacgttgtcg cccgtgagga aaactatgag ctacacaccg cgacgctctc
      841 cgcggggcca gggaatcgcg ctgatcgtgt tgggtttgtt actgctcgtc accggggtca
      901 tgctcccgta ccgcctggcg gggatcccgg ctatctttgt cctcggctgc ctgatcctgt
      961 ttgctggtat cgccgtcgcg atctttggtg acgcgccgcc tggtcgcttg tccgccggaa
     1021 tggaacagcg gattcggcgc cgcttcgagg acgatcgatc cctaaacgga tcagatcaac
     1081 cacgcgttgg atcacccatg atgaacatcg tcctagctgt tgtcgcctcc atcattttga
     1141 ccgtcatcat cagcgcggcc aatcagttca tttcagcgca acccacacag agcggctggg
     1201 cggatgtcac cgtgaccggc tgcaccatta agaccgagtt aggcaccacc accgcgaacg
     1261 cggacgtccg tatcgtcaat cacaccagcc atcccgcgtc ttacctggtc acagtagggc
     1321 ttaataacgc ccacggggac cggatcggcg tggccactgc ggcatccaac gacctaccgt
     1381 ccggccggac cgtgacggtc acgggcatgg gcaccaccaa cacgccgagt gctcccgcgg
     1441 ggcgatgcga gttagctgac gtaatgcgct tgccctagaa gtacatggat tagggacagg
     1501 catcgccagg gtgccggtca ccgtggtgct ggtgatcacc gggcggcctg gacctttgac
     1561 tggggatcgg cgcgcacagc gggcgtcttg gggatgggag cgtcgccctc atgtgttgac
     1621 tctggcagga gctcctgctc agaggagatg tgatgagcga ggtcgtcgac cgtagtcagg
     1681 tcaagcgttg gagcgcgttg ctggacgacg agcgtgacgc cgctgagttg tactcccggc
     1741 ttgcgcaggt cgagaccggg gagcgacgcc agatcttcga ggaactggcg ggtatcgagc
     1801 gacgacacgc gacgcattgg gctgacaagc tgcgcgcagc gggcgtcgag gtcccggcta
     1861 ccgggcggcc cacgttgcga accaggctga tcggcgccgc cgcccgctgg ttctccacca
     1921 gtgcggtgct gccgatcgtc gaacgcggtg aacgcgccga cgctggcatg tacgacgacg
     1981 aacccgacgc tgcgccgggg atggctgctg atgagcgtgg tcacgcccgg acgatcgcca
     2041 agctcatcga cggcgccgga cccaccccac ggcagcagat cgcgcgccgg gagcactggc
     2101 accgcaccga ccgctccggc agcctgcgag ccgcggtgtt cggcgtcagt gatgggctgg
     2161 tatccaacac ggctttggtg atgggttttg ccggttccgg agccgcacgc accgcgatcc
     2221 tgctcgccgg catcgccggc ctgctggctg gcgccttctc catggctgcc ggggagtacg
     2281 tgtcgatgtc cggccagcgc gagatgtacc agcgggaaat ctccttggag gcggcggaac
     2341 tggccgagaa gccggaggaa gaacgtgccg agctggtgct gctctaccgc gccaaaggat
     2401 tggaccgagc agacgcggaa cggctcgccg accggatcat ggccaatccg gaggtcgcgt
     2461 tggacaccct cgcccgcgag gagctcggtc tggacccgga cgagctcggc tcgccctggt
     2521 ccgccgcgct atccagcatg ctcgccttcg ctctcggcgc gttcgtcgtc gtcttgccgt
     2581 acctgatcgg cggtgggctg acgaccctgc tcgtcgcgat cgggcttgcg attctcgcac
     2641 tgttcaccgt cggagccggc ctcggagttc tcaacggccg ctcggccctg cgctccggtc
     2701 ttcgtcagct ggccgtcgga gggctcgcgg cggccgtgac cttcggagtc gggcacctga
     2761 tcggcacagt cgtgtcctga tcagccaccc gtgagtggca atgcaggcca taggccgcat
     2821 tgccactcac gggaacaggc gtgggactgt tcacggcaag tgccaacggg cgtgggccca
     2881 cagtcgttga catttaaggg gctttctggt taccgttgcc aacgtgtggt ggccaacaaa
     2941 cgttgtctag gagccgggga tggacgcgga cgtggtggtg gtgggagctg gaccgaccgg
     3001 tctgatgctg gccggggacc tggccgaagc gggcgtggcg gttaccgtcc tggaacggcg
     3061 ggccgatgaa tccaacgtga cccgggcgtt cgcagtgcac gcccggacca tggaggagct
     3121 cgagatccgg ggtctggccg gcgaactggc caagaccggc acaccgatca acgcgctgcg
     3181 gctgttcgaa cgggtgcaga tcgacctgtc gaggttgccc agccagttca actcactgct
     3241 gatcacgcca cagtacgaga ccgagcg
//
LOCUS       DASVXZ010000684         1803 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1600887, whole genome shotgun sequence.
ACCESSION   DASVXZ010000684 DASVXZ010000000
VERSION     DASVXZ010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1600887"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..325
                     /locus_tag="VF788_14475"
     CDS             80..325
                     /locus_tag="VF788_14475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935365.1"
                     /translation="MGDRSPDPDTGDDSGVRSTAERPPSTPRWVKVFGIIVGVLVLVF
                     VILLFTRGPGGHGPGMHSGSGGDTPHAGIREEGGQQA"
     gene            322..843
                     /locus_tag="VF788_14480"
     CDS             322..843
                     /locus_tag="VF788_14480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005438322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2269 domain-containing protein"
                     /protein_id="HEX8935366.1"
                     /translation="MTMTPALRKFALAAHLIFSVGWIGTVVAYLALGIAAVTSEDTQT
                     VRAAWIAMELTGWYVIVPLALASLLTGLVMALGTKWSLFRHYWVLFSLVLTILATVVL
                     LLHMPDVSVLADVAQEAEGVSLDGLGGDLFHPGLGLVVLLVIQVLNVYKPRGMTRYGW
                     RKQQEERRNKESG"
     gene            911..1600
                     /locus_tag="VF788_14485"
     CDS             911..1600
                     /locus_tag="VF788_14485"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEX8935367.1"
                     /translation="MSKQHGVEQHSRPPAADDTLERSSVTAGLAVAGIVGPIMFAVVA
                     LVQSLLRPEHSLVADPISALAAGPSGWVQDVNFLLFGSLMIAYAIGLHLGVRPTRWGV
                     VGLAFLILSGVGLVWAGLFPATDATGALQDDRVLHIVAFPMTFLGAGIGLIVMSRRMA
                     GDPRWRRVTTYALATGIAVLLLLLAGAGLVRPPGAPLHPSWGLFQWALLAVWLPCTVV
                     LALRLLRVARA"
BASE COUNT          298 a          544 c          609 g          352 t
ORIGIN      
        1 gacagagaca tactgtctcg ataaactgtc actgtcttgt agaaaacctt gacaacgacg
       61 cccgacagag gagacgcaca tgggtgaccg atcccccgac cccgacaccg gtgacgacag
      121 cggcgtgagg tcgaccgcgg agcgaccacc gagcacgcca cgctgggtga aggtgttcgg
      181 gatcatcgtc ggcgtcctgg tgctggtgtt tgtgatcctg ctgttcaccc gtggccccgg
      241 tggccacggc cctggtatgc acagtggcag tggtggcgac acaccgcacg ccggcatcag
      301 ggaagagggc gggcaacagg catgaccatg acacccgccc tccgcaagtt cgcgctcgcc
      361 gcgcatctca tattctcggt cggttggatc ggcaccgtcg ttgcatacct agctctcggt
      421 atcgccgctg tgactagcga ggatacccag acggtgcgtg ccgcctggat cgcgatggag
      481 ctgaccggct ggtacgtcat tgtcccgttg gccctcgctt cgctgctcac cgggcttgtc
      541 atggcactcg gtaccaagtg gagcttgttc cggcactact gggttctgtt ctcactcgtg
      601 ctaaccatcc ttgccactgt cgtcttgctt ttgcacatgc cggacgtgag cgtcctggca
      661 gacgtagccc aagaggcgga aggcgtcagt ctcgacgggc ttgggggcga cctcttccat
      721 cccgggcttg gccttgtggt gttgctcgtg attcaggtcc tgaacgtgta caagccgcgg
      781 ggcatgaccc ggtacggatg gcgtaagcag caggaggagc ggcgtaataa ggagtccggc
      841 taatagttcc tggacaccct tccgccgagg gctaccagtt gtcgttggca ccaagggaaa
      901 ggaggagcag atgagcaagc agcacggcgt ggagcagcac agccgacctc ccgccgccga
      961 cgacaccctg gaacgtagct cggtgactgc cggactggcc gttgcgggca tcgtcggccc
     1021 gatcatgttc gcggtggtcg ccctcgtgca gagcctgctc cggccggagc acagcctcgt
     1081 ggccgacccg atcagcgcgc tggcggcggg gcctagcggc tgggttcagg acgtgaactt
     1141 ccttctcttc gggtcgctca tgatcgcata cgccatcggg cttcatctcg gagtgcgccc
     1201 gacccgatgg ggcgtggtcg gcctcgcgtt cctgatatta agcggggtag ggctcgtgtg
     1261 ggcggggttg tttcccgcaa cagatgccac cggagcgctc caggatgatc gggtcctgca
     1321 catcgtggcc ttccctatga cattcctggg cgccgggatc gggctcatcg tgatgtcgcg
     1381 gcggatggct ggcgacccga ggtggcggag ggtcaccacc tacgcgctcg cgaccggcat
     1441 agccgtgctt ctgctgttgc tggcgggcgc cggcctcgtg cgaccacccg gcgcaccgct
     1501 ccacccgtcg tggggcttgt tccagtgggc gctgctcgca gtgtggttac cctgcacggt
     1561 cgtcctcgcg ctaagactgc tgcgtgtggc gagggcgtag gtcgcggagc gccgcgctga
     1621 tctcggatcc aatcggcaac cgtgagaaaa cactgcgaag gtggcgttgg tagcggcaca
     1681 agataggccg aaggtcgagc ggggcggtag gccttttgaa aggatattcg tctaaggaat
     1741 gcgtggtacg atgtgagcgc agtgacgggt agtaggaggc agcacgcgct cttgagtctc
     1801 ctc
//
LOCUS       DASVXZ010000685         7847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1382413, whole genome shotgun sequence.
ACCESSION   DASVXZ010000685 DASVXZ010000000
VERSION     DASVXZ010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7847
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1382413"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1018
                     /locus_tag="VF788_14490"
     CDS             <1..1018
                     /locus_tag="VF788_14490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8935368.1"
                     /translation="VRTAQGGAATYRASYAVGADGVNSAVRNALGLPFPGRSVIKSIM
                     LADVRLSSPPEDVLAVNGVGDEFAFIAPFGDGWYRVFAWNRHNQVDDKAPLELAEIRE
                     VTRAALGTDFGMHDPRWLSRFHSDERQVPRYRVGRVFLAGDAAHCHSPAGGQGMNTGM
                     QDAANLGWKLAAAVQGWGGERLLDTYHEERHRVGRQVLRSSGALLRLALIRTRPARQA
                     RNLLAQFLMGIPPVAARVAGTISGIGIRYPAPRGADRRVGIRVPNIALTGGTLYEALR
                     GGRFVLLGSDAPGLDLPPQVDAAVPARPTGRLVLVRPDGYLAWVGTAGQFPAWARGYF
                     QQRH"
     gene            complement(1015..1524)
                     /locus_tag="VF788_14495"
     CDS             complement(1015..1524)
                     /locus_tag="VF788_14495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX8935369.1"
                     /translation="MSYPDPRYFGDTGQINAVFRPARSEPDFISKPVNTAGPTVGAGT
                     AYHYLATTASTAGEFGLYRVDMGPEPAGPSRHFHKTISESFFILYGTMRLFDGDRWID
                     AHAGDFLYVPVGGLHAFRNESGEPASMLLLFAPGAPREAYFEGITELAELSDEERTEF
                     FIRHDNYFV"
     gene            complement(1702..2283)
                     /locus_tag="VF788_14500"
     CDS             complement(1702..2283)
                     /locus_tag="VF788_14500"
                     /inference="COORDINATES: protein motif:HMM:NF037150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX8935370.1"
                     /translation="MAFTERSRAAREAILTAARRRFTEEGYERTTIRMVAADAGLDPS
                     MVMRYYGSKDGLFSAAVDVDLHLPHLVDVPSDELGRVVARHFVELWESDWGQGTLLIL
                     IRSAASHPEAAERVRAVFTEQVIPLVRQATGDRADADVRAGLLSTHLLGTALCRYILR
                     LPPVVAMDADALVDATAPVLQHCLTSPLTCGRS"
     gene            2486..2872
                     /locus_tag="VF788_14505"
     CDS             2486..2872
                     /locus_tag="VF788_14505"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX8935371.1"
                     /translation="MDRGTYIEYDGRPAVRFQHIYSHPIERVWAAVTQPDELSHWFPF
                     AVQIEPKAGGRIEFSGDPNMEPMTGTIMVFDPPSRFSFKLLRGDVADGPHSDTAEPWR
                     ENYDAYIADGMPHGADIPGAKTPSDQ"
     gene            2989..3870
                     /locus_tag="VF788_14510"
     CDS             2989..3870
                     /locus_tag="VF788_14510"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEX8935372.1"
                     /translation="MRLVRRAQAWRQYRRMSGLLAEPDRLNRATAAPPRDATPPVPRR
                     RLISKGEWFYAGSFVGIVCLLLYLVTAFPSLAGKTSRWEPAPSSMHDVAKAPFAFGRT
                     TPTGRPITYDPCRPIHYVVNPTDMPSGGMALIRDAIRRISAASGLTFIEDGVTQERPA
                     RAQRQLVQPQRYGQRWAPVLVAWVDEAEYPLVKGNVAGVGGSFFADPDGPESARYVTG
                     QIALDRQDLSQVLSDDDGYAVARAVVMHELGHVVGLGHVADPSELMAAVNSGQTDLGA
                     GDLQGLAKAGHGKCWPD"
     gene            3916..4689
                     /locus_tag="VF788_14515"
     CDS             3916..4689
                     /locus_tag="VF788_14515"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009157124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8935373.1"
                     /translation="MPTALITGPTAGIGSAFARRLAAEGHDLVLVARDRIRLRRLSAE
                     LSQRHGITAEVFPADLADAGERQSVEQRLCSSDPVDLLVNNAGFGVAAAGFLDADIAD
                     LQAQLDVNVTSVLRLTHAALPGMIRAGRGAVINVSSVGAFLPGRGTTYGASKAYVTMF
                     SEGLAMTLADTGVQVIALCPGFVRTEFHTRAGIDMTGTPSTFYLDPDDVVRDCLADLR
                     RGRTISVPGLQYRALVGLVDVLPRSLVRRLAGRTGRGRA"
     gene            4686..5216
                     /gene="pyrE"
                     /locus_tag="VF788_14520"
     CDS             4686..5216
                     /gene="pyrE"
                     /locus_tag="VF788_14520"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEX8935374.1"
                     /translation="MTEPRARLAELVRKLAVVHGRVTLSSGAQADYYVDLRRVTLHHE
                     AAPLIGRLVRELTADWSYRAVGGLTLGADPVAAAVLHAPGPPVDAFIVRKESKQHGMQ
                     RRIEGPDVAGRHVLAVEDTSTTGGSVLTAVAALREAGADVVGVATVVDRDTGAREAIE
                     AAGLPYRAVLSVSELL"
     gene            5213..5884
                     /locus_tag="VF788_14525"
     CDS             5213..5884
                     /locus_tag="VF788_14525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX8935375.1"
                     /translation="MSGNASYSSHCHSQGPTEWGPTIGVPPWPGDWPGDPRYDPELLR
                     EGDRRNVVDAYRYWRRDAVVAELDARRHPLHVAIENFGHDHNIGTVVRTANAFAVAEV
                     HIVGRRRWNRRGAMVTDRYQHLRHHDDIAELLAHATTAGLTVVAVDNSPGALRLESAS
                     LPRNCLLLFGQEGPGLTAQARAGAALTVSIAQFGSTRSINAGVAAGIAMHAWIRQHAD
                     LRAAW"
     gene            5881..6933
                     /locus_tag="VF788_14530"
     CDS             5881..6933
                     /locus_tag="VF788_14530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020632397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 76 protein"
                     /protein_id="HEX8935376.1"
                     /translation="MSVWAGRAAAAERAVHTRHVRVLSGLPDTRLGEIAWPAGSPTVV
                     WHYWWQAHLLDCMLDAYHRAPTQWRREAIAALERGVRVRNLTGWVNNYHDDIAWLGLA
                     LQRSAAVAGLRKPGAEQAIMRRLRLGRGPSGGMRWRVGDDFVNVPATGPAAIFYARRG
                     NMGIAASLVDWMLQHLIDPSTGLVFDGARVNPDGTVRSVERAVYSYCQGVLLGACVEL
                     SAATGAPRWLEQATATVHAVDEHLTEAGVLRGHGGGDGGLFTGILVRYLAHAVVAGSL
                     PEPARKIAARLVLDSAEAAWRNRGVAEGGPVFGPQWTVPARPPGPDLPERDLSVQLSG
                     WMLLEAAAVLSAQQSD"
     gene            6945..>7847
                     /locus_tag="VF788_14535"
     CDS             6945..>7847
                     /locus_tag="VF788_14535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005442790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl--tRNA ligase-related protein"
                     /protein_id="HEX8935377.1"
                     /translation="MIDLKVLREEPDRVRASQRARGEDENAVDALIDADERRRKAVAA
                     ADSLRAEQKTLGKQVGAARGAERDELLSHAKQLAADVKKAEAEQASAEQAMEAAHRAV
                     SNLIIDGVPAGGEDDYVVLKHVGSPPELDVAPRDHVELGTALGLFDTERGAKVSGARF
                     HFLTGLGAQLQLGLLQLAASQAVASGFTLMIPPVLVRPEIMEGTGFLGAHAAEVYRLR
                     DDDLYLVGTSEVPLAGYHADEIVDLSGGPLRYAGWSSCFRREAGSYGKDTRGIFRVHQ
                     FDKVEMFVYCRPECAETEHERLLAW"
BASE COUNT         1182 a         2624 c         2757 g         1284 t
ORIGIN      
        1 ggtgcgcacc gcgcagggcg gtgcggcgac atatcgcgcg tcttacgccg tcggtgccga
       61 cggggtgaac agcgcggtcc gcaacgccct cgggttaccc ttccccgggc gatctgtgat
      121 caagtccatc atgctggccg acgtccggct cagctcccca cccgaggacg tgctggcggt
      181 caacggggtc ggcgacgagt tcgccttcat cgccccgttc ggcgacgggt ggtaccgggt
      241 gttcgcctgg aaccggcaca accaggtcga cgacaaggcc ccgctggagc tcgcggaaat
      301 ccgggaagtg acccgcgccg ccctgggcac cgatttcggc atgcacgacc cgcgctggct
      361 ctctcgtttc cacagcgacg agcgtcaggt cccgcgctac cgggtaggcc gggtgttcct
      421 ggccggtgac gccgcgcatt gccactcgcc cgcaggtggc cagggcatga acaccggtat
      481 gcaggatgcc gcgaacctgg gttggaagct cgccgcggcg gtccaggggt ggggcggtga
      541 gcgccttctg gacacctacc acgaggagcg gcaccgggtc ggtcgccaag tgctgcgcag
      601 tagcggcgcg ctcctgcggc tggcgctgat cagaacccgg ccggcccggc aggcgcgcaa
      661 cctgctcgcc cagttcttga tgggtatccc gccggtcgcc gcgcgagtag ccggaacgat
      721 ctccggtatc ggcattcggt accccgcgcc gcgaggggcc gaccggcggg taggtatccg
      781 cgtgcccaat atcgcgctga ccggcgggac gctgtacgag gccttgcgtg gtggccggtt
      841 cgtcctgctc ggcagcgatg cccccgggct cgacctgcct ccccaggtcg acgccgccgt
      901 gccggcgcgg ccgaccggcc ggttggtgtt ggtccggccc gacggctacc tggcctgggt
      961 tggcacggcg gggcaattcc ccgcctgggc acgcggatac tttcagcagc gtcattagac
     1021 gaagtagttg tcgtgacgga tgaagaactc tgtccgttcc tcgtcactga gttccgcgag
     1081 ctcggtgatt ccctcgaagt aggcctcccg gggcgcgccg ggtgcaaaca gcagcaacat
     1141 ggacgcgggt tcgcccgact cgttgcggaa ggcgtgcagc ccccctacgg ggacatacag
     1201 aaagtccccg gcgtgagcgt cgatccagcg gtcaccgtcg aacaaccgca tcgttccgta
     1261 caggatgaag aaggactcgg aaatcgtctt gtggaagtgc ctgctcggcc ccgcgggttc
     1321 cggccccata tcgacgcggt acagaccgaa ctctcctgcg gtcgatgctg tggtggccag
     1381 gtagtggtaa gccgttcccg cgcccaccgt cggtcctgct gtgttgaccg gtttcgatat
     1441 gaagtcgggt tcggagcgtg ctggcctgaa caccgcattg atctggcctg tgtcaccgaa
     1501 gtaccgggga tctggatacg acatgtcgag tcctctgggt cggtagaaat ttatccgtgc
     1561 gcctgattgg tacccggttc ggccttcacg aactccgggc gcagcccgcg ctcccggacc
     1621 tcggtagccg gcggtgagac cgtcaacgat cgagcgcggc gccatggact cgcccggaac
     1681 ctccctggtt gtaggtggag gtcagctcct gccgcaggtc agcgggctgg tcaagcagtg
     1741 ctggagcacc ggcgccgtgg cgtcgacaag cgcgtcggcg tccatggcga cgaccggcgg
     1801 cagtcgcagg atgtagcggc acagcgcggt accgagcagg tgggtgctga gcagtccggc
     1861 gcgaacgtcg gcatcggctc gatcgccggt cgcctggcgg accagtggga tgacctgctc
     1921 ggtgaacacc gcgcggactc gctcagcggc ctcggggtgg gaggcggccg atctgatcag
     1981 gatgagcagg gtcccttgac cccagtcgct ctcccaaagt tcgacgaagt gccgggcgac
     2041 cactctgccc agctcgtctg acggcacgtc gaccaggtga ggcaggtgca ggtcgacgtc
     2101 gaccgcggcg ctgaacagcc cgtctttgct gccgtagtag cgcatgacca tggacgggtc
     2161 gagcccggca tcggccgcga ccattcggat ggtcgtgcgc tcgtaaccct cttcggtgaa
     2221 ccgacgccga gccgcggtga ggatcgcctc gcgcgctgcc cgggatcgtt cagtgaacgc
     2281 catccaacca gcgtaggcca acgcacgttg tcaggacgct ttaccctgat attccttggc
     2341 tccgcaagga ggcgcaacgt cgcatctaca taatcgaggc cgcgccgatc gccgagctcg
     2401 atgcctggct ggtcccctac cgccgcctgt ggaactaccg tctcgatgcg ctcggcaggc
     2461 acctcgacaa cccgaaggag aactgatgga tcgcggaacc tacatcgagt atgacggccg
     2521 gcccgccgtg cgtttccagc acatttactc gcacccgatc gagcgagtgt gggccgcagt
     2581 gacccaaccc gatgagctgt cccactggtt tcccttcgcc gtgcagatcg agccgaaggc
     2641 cggagggagg atcgaattct ccggcgatcc caacatggag ccgatgaccg gcacgattat
     2701 ggtcttcgac ccacccagcc gcttttcatt caagctcctc cgcggggacg ttgctgatgg
     2761 accgcacagt gataccgccg agccctggcg tgagaactac gacgcctata tcgccgatgg
     2821 tatgccgcac ggcgcggaca ttcctggcgc gaaaacaccg tcggatcagt gaacgggcct
     2881 cggcaggcgt gacatcagta ggcgtcgcgc cagtgccccc tcggatcttg gaggtggacg
     2941 gtgtgccgga ccgcgccatt acagtggtcc tgtcggcgag gaggcgtcgt gagactcgtg
     3001 cgcagggctc aggcgtggcg gcagtaccgg cgcatgtccg ggctccttgc cgaaccggac
     3061 cgcctgaatc gggcgaccgc ggccccgcca cgagatgcca caccaccggt gccgcgccgc
     3121 cgcctgatca gcaagggtga gtggttctac gccgggtcgt tcgtgggaat cgtctgccta
     3181 ctcctctacc tggtcacggc ctttccgtcg ctggctggca aaaccagccg gtgggagccg
     3241 gccccttcgt caatgcatga tgtggcgaag gcgccgttcg cttttgggcg aacgaccccc
     3301 accggtcgac ccattaccta cgatccgtgc cgtccgatcc actacgtcgt gaacccgact
     3361 gacatgccca gtggtgggat ggcgttgatc cgtgacgcca tccggaggat cagcgcagcg
     3421 tccgggctga cattcatcga ggacggcgtc acgcaagagc gtcccgcccg ggcacaacgg
     3481 cagctcgtac agccgcaacg ttacggccag cgctgggcgc cggtgttggt cgcctgggtt
     3541 gacgaggcgg agtacccgct ggtcaaaggt aacgtggcgg gggtcggtgg gagtttcttc
     3601 gctgacccgg acgggcccga atcggcacgg tacgtcaccg gccagatcgc gctcgatcgg
     3661 caagatctct cccaggttct ctcggatgat gacggctacg cggtggcgcg ggctgtcgtg
     3721 atgcacgaac tcggtcacgt cgtaggcctt ggtcacgtgg cggacccgag tgaattgatg
     3781 gcggcggtga actcggggca aacggacctg ggcgccggtg acctccaggg tcttgccaag
     3841 gcagggcacg gcaagtgctg gcctgactga ccatgtgcgc agctccgatc cgtctgagcg
     3901 gctagcctgc aggctatgcc taccgcgctg attaccggtc ctaccgcggg gatcgggagt
     3961 gcgttcgccc gcaggctcgc ggccgagggc cacgacctgg tgctggtcgc cagagaccgg
     4021 atccggctgc ggcggctgtc cgctgagctg tcgcagcggc atgggatcac tgccgaggta
     4081 tttcctgccg atctggctga cgctggtgag cggcaatcgg tcgagcaacg gctgtgctcg
     4141 tcagatccgg tggatctgct ggtgaacaac gccggtttcg gggtggccgc tgccggcttc
     4201 ctcgacgctg acatcgccga tctgcaagcg cagctcgacg tcaacgtaac cagcgtgctg
     4261 cggctgacgc acgctgcgct gccggggatg atccgcgccg ggcgcggagc ggtgatcaac
     4321 gtgtccagtg tgggcgcctt tctgcccggc cgcggcacca cttacggcgc gagcaaggca
     4381 tacgtgacca tgttctccga agggctggca atgacgctgg ccgacaccgg agtgcaggtg
     4441 atcgcgctgt gccccggttt cgtccgcacc gagttccaca cccgggcggg gatcgacatg
     4501 accggtaccc cctcgacgtt ctacctggac cctgacgacg tcgttcggga ctgcctggcc
     4561 gacctgcggc gcggccgcac catttcggtg cccggcctgc agtaccgggc cttggtgggg
     4621 ctggtggacg tgttgccccg gagtctcgtc cggcgcctcg ccgggcgcac cggacggggc
     4681 cgcgcatgac agagccccga gctcggctgg cggagttggt gcgcaagctc gcggtggtgc
     4741 acggtcgggt cacgctgtcc tcgggtgcgc aggccgacta ctacgtggac ttgcggcgcg
     4801 tcacgctgca tcacgaggcc gctccgctga tcgggcggct ggtccgcgag ctgaccgccg
     4861 actggtccta ccgggcggtg ggtggtttga ccttgggcgc cgacccggtc gccgccgccg
     4921 tcctgcacgc accgggcccc ccggtggacg ccttcatcgt gcgcaaggag tccaagcagc
     4981 acgggatgca gcggcgcatc gaaggcccgg acgtggcggg ccggcacgtg ctcgccgtcg
     5041 aggacacctc caccaccggc ggctcggtgc tcaccgcggt ggcggcgctg cgcgaggcag
     5101 gcgcagacgt cgtcggtgtg gccaccgtgg tggaccggga caccggtgct cgcgaagcca
     5161 tcgaagcagc cgggctgccc taccgtgcag tcctgagcgt gagcgagctc ctgtgagtgg
     5221 caatgcgagc tatagctcgc attgccactc acagggcccc acggagtggg ggcccaccat
     5281 cggtgtccct ccatggccgg gtgactggcc cggggacccc cgttacgacc ccgaactgct
     5341 gcgcgagggt gatcgccgta atgtcgtcga cgcctaccgg tactggcgcc gtgacgcggt
     5401 ggtcgctgag ctcgacgccc ggaggcaccc gctgcacgtc gcgatcgaga acttcggcca
     5461 cgaccacaac atcggcaccg tggtgcgcac cgcgaacgct ttcgcggtgg ccgaggtgca
     5521 catcgtgggg cgccgccggt ggaaccggcg cggcgccatg gtcaccgacc gctaccagca
     5581 cctgcgtcac catgacgaca tcgctgagtt gctcgctcat gccaccacgg cgggtctcac
     5641 cgtggtcgcc gtggacaact ctccgggcgc gctgcgcttg gaatccgcca gcctgccgcg
     5701 gaactgcctg ctgctgttcg ggcaggaagg gccgggcctg accgcgcaag cccgagccgg
     5761 agccgcgctg accgtgtcca tcgcgcagtt cggctcgacc cggtcgatca acgccggggt
     5821 agccgccgga atcgcgatgc acgcctggat ccgccagcac gccgacctgc gggcggcctg
     5881 gtgagcgtgt gggcgggccg ggcggcggcg gccgaacggg ccgtgcacac ccggcacgtc
     5941 cgcgtactgt cggggttgcc agacacccgg ctgggcgaga ttgcctggcc agcagggtca
     6001 cccacggtgg tctggcacta ctggtggcag gcgcacctgc tggactgcat gctcgacgcc
     6061 taccaccgcg ctcctacgca gtggcggcgc gaggccatcg ccgcactgga acgcggcgtg
     6121 cgggtgcgca acctcaccgg ctgggtgaac aactatcacg acgacatcgc ctggctcggt
     6181 ctggcgctgc agcgcagcgc ggcggtcgcc gggctgcgca agccgggcgc agagcaggcc
     6241 atcatgcgcc ggctgcggct cgggcgcggt ccgagcgggg ggatgcgatg gcgggtcggc
     6301 gacgatttcg tcaacgtccc ggccaccggt cccgccgcga tcttctacgc ccggcgggga
     6361 aacatgggaa tcgccgcatc cctggttgac tggatgctcc agcacttgat cgacccgagc
     6421 accggcctgg tgttcgacgg ggcccgggtg aacccggatg ggaccgtgcg cagcgtcgaa
     6481 cgcgccgtct acagctattg ccaaggcgtg ttgctcgggg cctgtgtcga gctgagcgcc
     6541 gccaccggag caccgcgctg gctcgaacag gcgaccgcga cggtgcacgc cgtcgacgag
     6601 catctcaccg aggccggagt gctgcgtggg cacggcggcg gcgacggcgg gttgttcacc
     6661 ggcatcctgg tgcgctacct cgctcacgcc gtggtggctg ggtccttgcc cgagcccgcg
     6721 aggaagatcg cggcgcgcct ggtactggac tccgccgagg cggcctggcg caaccggggc
     6781 gttgccgagg gcggtccggt gttcgggcca cagtggacgg ttcccgcgcg gccaccgggc
     6841 ccggacctgc ccgagcgtga tctgtccgtc cagctgtcgg gctggatgtt gctcgaggcc
     6901 gccgctgtgc tgtccgccca gcagtcggac taggctgacc caccatgatc gatctcaagg
     6961 tgctgcggga ggagccggac cgggtccggg cctcgcagcg ggctcgcggt gaggacgaga
     7021 acgccgtcga cgcgctgatc gacgccgacg agcggcggcg caaggccgtc gctgctgccg
     7081 actcgctgcg ggccgagcag aaaacgctgg gtaagcaggt gggcgccgcg cggggcgcgg
     7141 agcgtgacga gctgctctcc cacgccaagc agctcgccgc ggacgtcaag aaggccgagg
     7201 ccgagcaggc cagcgcggag caggcgatgg aggctgcgca ccgcgcggtc tccaatctga
     7261 tcattgatgg ggtacccgcc ggtggggagg acgactatgt cgtgctcaag cacgtcgggt
     7321 cgccgcccga gctcgatgtc gccccgcgcg accacgtcga gctgggcacc gcgctaggcc
     7381 tgttcgacac cgagcgcggc gcgaaggtct cgggcgcccg gttccatttc ctcaccgggc
     7441 tcggcgcgca gcttcagctc gggctgctgc agctggccgc atcgcaggcg gtcgcctccg
     7501 ggttcaccct gatgatcccg ccggtgctgg tccgtccaga gatcatggag ggcaccggat
     7561 tcctcggcgc gcacgccgcc gaggtctacc ggctgcgcga cgatgacctg tacctggtcg
     7621 ggacctcaga ggtgccgctg gctggttacc acgccgacga gatcgtcgat ctgtccggcg
     7681 gtccgttgcg gtacgccggc tggtcgtcct gtttccggcg ggaggctggc tcctacggca
     7741 aggacacccg cggcatcttc cgggtgcatc agttcgacaa ggtcgagatg ttcgtctact
     7801 gccggcccga atgcgccgag accgaacacg aacgcctact ggcctgg
//
LOCUS       DASVXZ010000686         1629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_77192, whole genome shotgun sequence.
ACCESSION   DASVXZ010000686 DASVXZ010000000
VERSION     DASVXZ010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77192"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1571)
                     /locus_tag="VF788_14540"
     CDS             complement(<1..1571)
                     /locus_tag="VF788_14540"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8935378.1"
                     /translation="MIVGGDVCSAELVTRWAPNRRMINSYGPTEATVVASWSAPLRPD
                     GQRPPIGSPIPNTRLYVLDSRLRPVPVGVSGELYIAGVGLARGYLHRPGLTAARFVAN
                     PFGGPGERMYRTGDVVRWNPQGELEYLGRADAQVKIRGLRIESGEIESALTAHPAITE
                     AVVIAREDQPGTSRLVGYLVPATEPTPSPTVAELRAHLGRTLPDYMIPAVFVTLEALP
                     LSPSGKVDRKALPAPDRAAEPVAQYLAPRSTTEQILVGIWAQVLHVERVGVHDNFFEL
                     GGDSILSIQVVSRARRAGVQVSTKDIFFRQTVAELAASVGDVLPESPDNEVIAGPAPL
                     TPIQQWFFTTHGALPHFNQSFVVELAEDLDSDTLSVALDAVIAHHPALRMRFSQADGQ
                     WWQDVAPVAPGELLRRLDLSELDEEGAAKAMAQAAMAAQSGLDIAHGPLLRAVLFSFG
                     AAQRPRLFIGIHHLVVDGVSWRILLGDLQSAYQQLRGGLPAESDPGELTAVGLEPVGT
                     PFTQWAHRLSRCVQAG"
BASE COUNT          283 a          579 c          531 g          236 t
ORIGIN      
        1 ccggcctgca cacaccggct caaccggtgt gcccactggg tgaacggagt accgaccggc
       61 tccaggccaa ctgcggtcaa ttcccctggg tccgactccg ctggcagccc accgcgcagc
      121 tgctggtacg ccgactggag atcaccgagc aggatccgcc acgacacccc atcgaccacc
      181 aggtggtgaa tgccgatgaa caggcgtggc cgctgagcag cgccgaagct gaacagcaca
      241 gcacgcagca acggaccgtg ggcgatgtcc agaccggact gagcggccat agccgcctga
      301 gccatggcct tcgcggcgcc ttcctcgtcc agctcggaca gatccaaccg gcgcaacagc
      361 tcacccggcg caacaggtgc gacgtcctgc caccactggc catccgcctg ggagaaccgc
      421 atccgcaacg ccggatgatg cgctatcacc gcatccagtg ccacggacaa cgtgtcggag
      481 tcgaggtctt cggccagctc caccacgaag gactggttga agtgcggcag cgcaccatgg
      541 gttgtgaaga accactgctg gatcggcgtc aacggcgcgg ggccggcgat cacctcgtta
      601 tcaggcgatt ccggcagcac atcccccacg ctcgcggcaa gctcagcaac cgtttgccgg
      661 aagaagatgt ccttcgtgct cacctgcacg ccggcccggc gggcgcggga aaccacctgg
      721 atactgagga tggagtcccc gccgagttcg aagaagttgt cgtggacgcc gactcgttcc
      781 acatgcagta cctgcgccca gataccaacc aggatctgct cggtggtgct gcggggagcc
      841 aggtactgcg ccaccggctc cgcggcccgg tccggcgcag gcaatgcctt gcggtccacc
      901 tttccggacg ggctcaacgg cagtgcctcg agcgttacga acaccgcggg aatcatgtag
      961 tcgggcaggg tgcggcctag atgtgcccgc agctccgcca ccgtcggaga tggtgtcggt
     1021 tcagtagcgg ggaccaggta ccccactagc cggctggttc ccggttggtc ttcgcgggcg
     1081 atgaccacgg cttcggtgat cgccgggtga gcggtcagcg ccgactcgat ctcgccggat
     1141 tcgatccgga gaccgcggat cttgacctgc gcatcggccc ggcccaggta ctccagctcc
     1201 ccctgcggat tccaccgcac cacatcgcca gtccggtaca tccgctcacc cgggccaccg
     1261 aagggattgg ccacgaaccg ggccgcggtc agcccggggc ggtgcaggta gccgcgggcc
     1321 agtccgaccc cggcgatgta cagctccccg ctcaccccga ccgggaccgg gcgcaaccgc
     1381 gaatccagca catacagccg ggtgttgggg atcggtgatc cgatcggcgg gcgctgcccg
     1441 tcggggcgca gcggtgcgct ccagctggcc accacggtgg cctccgtcgg cccatacgag
     1501 ttgatcatcc ggcggttcgg ggcccaccgg gtgaccaact cggcgctgca cacgtcgcca
     1561 cccacgatca cggtgcgcca ggcgggcaac ccgctcgcgg cgagggcggc ggggatcgtg
     1621 gccagcgcc
//
LOCUS       DASVXZ010000687         1967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_77261, whole genome shotgun sequence.
ACCESSION   DASVXZ010000687 DASVXZ010000000
VERSION     DASVXZ010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77261"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            361..924
                     /locus_tag="VF788_14545"
     CDS             361..924
                     /locus_tag="VF788_14545"
                     /inference="COORDINATES: protein motif:HMM:NF014689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump"
                     /protein_id="HEX8935379.1"
                     /translation="MLGTLAKTVIFVLPLGLDVLSVSTALGALGLSGWARWRVSLVLA
                     SCQVAAMLTGLVLGAELAETIGEPAGYVGAGVFILLGAYLLLDRDTSEAERVRKRMSE
                     DVFGLIGLGVSISPDELAAGFGLGLAHIPIAAGFGAIAIQGVVASQLGLFLGARLGER
                     FREAAGRLAAIGLLLIGVYQLIEQVIG"
     gene            complement(942..1841)
                     /locus_tag="VF788_14550"
     CDS             complement(942..1841)
                     /locus_tag="VF788_14550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX8935380.1"
                     /translation="MSTAVLYDRPGPRTRRRIIAGSIVVGLALAVLLIAVLLRLTAQG
                     QLTEEKWGPLVNPANPFFVDLWVNLGVALLHNIQAAVLAMMFSLLLGTMLALTRISLP
                     RWGRWSVVVPIEFFRGLPVVIAIFFAARVLPELGVDLPLLWYLVIGLTAYNSVIIAEI
                     VRSGIASLPRGQAEAAAAVGLTRGQALRSILLPQAVRVMLPALISQLVVIFKDTSLGL
                     VIQYVEAVRFVGIAIQELHNPLQLYLAVGAIFILINYGLSRLAVWTERRLTHRGRQGV
                     AVPRATAAMPSGTTLAGTSVAGG"
BASE COUNT          364 a          604 c          633 g          366 t
ORIGIN      
        1 cgggcactcc ggcagactcc gatcccggtt gaacgaaggc ccggcagacc gtacagcggg
       61 cagcgatgtt cgtcgaacgg atcgcgtgga ctcctcgccg aggcgacacg gacacgcgcc
      121 gggcggtgtt gcacctgaga aacaatccgg ccgaacagcc taatcgactc ctggcttttg
      181 gagcatggcc ggaccttctg gttaccgtga cgcaccatca agcgcagccg gtcaaccaga
      241 attcttaggc cttgacgaga cagcgtccgg ttccctatac gttgttgggc ggtccgcgac
      301 ggctcccagt aatgactacc agccattttt gatcgactac actgagtagg aattgaattt
      361 atgctgggta ccttggccaa gaccgtgatc tttgtgttgc cattgggtct ggacgtgctg
      421 tccgtctcaa ccgcactcgg tgcgctcggg ctatccggct gggcacgatg gcgggtgtca
      481 ctggtgctcg ctagctgtca ggtcgctgcg atgttgactg gcctggtgct cggcgctgag
      541 ctcgccgaga cgatcgggga gccggccggt tacgtcggtg ctggcgtctt catcttgctg
      601 ggcgcttact tactgctgga ccgggacacg agtgaggcgg agcgggtgcg caagcgcatg
      661 agcgaggatg ttttcggact cattgggctc ggcgtatcga tcagccctga tgagctcgcg
      721 gccggattcg gacttgggct ggcccacatt cccattgccg ctggcttcgg cgctatcgcc
      781 atccagggtg tggtcgcttc tcagcttggg ttatttctcg gggcgcggct cggtgaacga
      841 ttccgcgagg cagcggggcg gctcgctgcc attggactgc tccttatcgg tgtctaccag
      901 ctcatcgagc aggtcattgg ctgaacaaac aggccggagt atcagcctcc tgcgacgctg
      961 gttccggcca atgtggttcc gctgggcatc gctgccgtgg cccgtggcac cgccacaccc
     1021 tgtcgcccgc ggtgggtcag ccgccgttcg gtccagacgg ccagcctgct gagtccgtaa
     1081 ttgatcagaa tgaagattgc gccgacggcc aggtagagct gaagcgggtt gtgtaactcc
     1141 tgaatggcga ttcccacgaa gcggaccgcc tcgacgtact ggatcaccag gccgagcgag
     1201 gtgtctttga agatcaccac aagctggctg atcaacgcgg gcagcatcac ccggacagct
     1261 tgtggcagga gaatcgagcg caatgcctgc ccgcgagtaa gtccgaccgc tgccgctgct
     1321 tcggcctggc cacgaggtag cgaggcgatg cccgaccgca cgatttccgc gatgatcacg
     1381 gagttgtatg cggtgagtcc gatcaccaga taccacagca gcggcagatc cacgcccagc
     1441 tcgggcagca cgcgggcggc gaagaagatt gcgatgacga ccggcaggcc gcggaagaac
     1501 tctattggca ccaccacgct ccatcgtccc cagcgcggca agctgatcct ggtcagggcc
     1561 agcatggtgc ccaacagcag agagaacatc atcgccagta cggctgcttg aatgttgtgc
     1621 agcagagcca cgccgagatt cacccacaga tcaacgaaaa acgggttcgc cgggttgacc
     1681 agcggtcccc atttctcctc ggtcagctgg ccttgagccg ttaaccgcag cagcacggcg
     1741 atcagcaaca cggccaacgc caatcccaca acgatgctgc ccgcgatgat tcgtcggcgg
     1801 gtgcgcgggc cggggcggtc gtagagaacg gcggtgctca ccggaccacc gccacccggc
     1861 gctcgaggac gccgagtccc aggcctgccg ggatcgtgat gagaagataa ccggtcgcca
     1921 ccccgagcag taccggaatg agggctagtc cctgcgcgga ggtcagc
//
LOCUS       DASVXZ010000688         7240 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1651959, whole genome shotgun sequence.
ACCESSION   DASVXZ010000688 DASVXZ010000000
VERSION     DASVXZ010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7240
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1651959"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1208
                     /gene="manA"
                     /locus_tag="VF788_14555"
     CDS             <1..1208
                     /gene="manA"
                     /locus_tag="VF788_14555"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEX8935381.1"
                     /translation="LGGPVPAPHPQAELWLGAHPADSSILLHADGGQTTLLEALRAEP
                     GRHLGIPCAARWGSRLPFLLKVLAAEEPLSLQAHPSAAQAAEGFAREEARGLPRDAPE
                     RNYSDASHKPELICALTELHALAGFRNPLRTVELLAALDAPLLEPYRAMLAAEPNADG
                     LRTLFTTWITMPEPAVKALLPPTLDACVALLRRDGVGGAFPTSCGGPGQDFRSECRVA
                     LELAEAYPGDVGVLAALLLNHVVLASGQAMYLPAGNLHSYLRGIAVEISANSDNVLRG
                     GLTAKHIDVPELLRVLDFSYGELPVQRGERLGPHETAYRTPAEEFQLTRLEWAQGEST
                     PVLLRSSAPQILLCTQGSADLRSRDGARVSVRRGGSAWLAATDPDVMVCPGTGPVQLF
                     RARPGLIES"
     gene            1317..2240
                     /locus_tag="VF788_14560"
     CDS             1317..2240
                     /locus_tag="VF788_14560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX8935382.1"
                     /translation="MSASGGATAIVAALLANAGIALAKFVGYLITGSSSMLAEAVHSV
                     ADTSNQGLLLLGRKRAQRQATQEHPFGYGRDRYFYSFVVALLLFSLGSVFALYEGVHK
                     LQSHDPLSSPLVAIGILIVAIVLEGVSFRTAIRESQPLKGGDSWWQFIRQSKSPELPV
                     VLLEDAGALIGLLLAFCGIGLSVLIGDPIWDGFGTIGIGVLLGVIAIILIIETKSLLI
                     GEGSDSDELNRICGAMVGPGVDRVIHLRTQYLGPDELLIGAKIAVPAALSTAEVARII
                     DEAEARVRGAIPAARIIYLEPDLDRTPTSTT"
     gene            2313..3650
                     /locus_tag="VF788_14565"
     CDS             2313..3650
                     /locus_tag="VF788_14565"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8935383.1"
                     /translation="MFESLLVVNRGEIARRIIRSARELGIRTVAVYSSLDAELPFVVE
                     ADEAVELTGPPAQIYRDAPQLLEVARKTRAVAVHPGYGFLSEDPGFARLVGDAGLVWI
                     GPSAKAISAMGDKVAAREIVAAAGVPVAAGSAGAMATEDAAVAEAERVGFPVMLKAAA
                     GGGGMGMAIASDVATTRSEYARVSAFAQRLFGDPRLFVERYFPRVRHVEVQILGLADG
                     RVVALGERECSVQRRHQKIAEESPSPAVDPDLRRRMEHAAVLAASTVDYHNAGTVEFL
                     LDQDTGEFFFLEMNTRLQVEHPVTELRYGLDLVAAQLSIAAGAELGFDVEALTPVGHA
                     IELRVNAEDPKRFLPGPGPVTEWVEPTGDGIRVDSGYTAGNTVTPYFDSLLAKLVVHG
                     RNREQALQRARVAVAEFSVAGPKCNLPFHAELLEHPEFISGHYDTALVARMRP"
     gene            3752..4393
                     /locus_tag="VF788_14570"
     CDS             3752..4393
                     /locus_tag="VF788_14570"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEX8935384.1"
                     /translation="MGRLVAIEGLDGAGKRTLADALSAALLVQNASVARLGFPRYDAD
                     IHAQLVRDALYGRLGDLVESVHGMAVLFALDRREAAEGLRALRRRHDVVLLDRYVASN
                     AAYGAARLHEDAGGPFVEWVRELEVERFDVPVPDVQLLLRVPISVASARADRRAEADS
                     ARRKDRYETDHELQTRCAAVYDGLAAAGWLAPWSVSDGVATDLNDLAMRLLDG"
     gene            4452..5129
                     /gene="mtrA"
                     /locus_tag="VF788_14575"
     CDS             4452..5129
                     /gene="mtrA"
                     /locus_tag="VF788_14575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MtrAB system response regulator MtrA"
                     /protein_id="HEX8935385.1"
                     /translation="MAARVLVVEDDPAAAEMLSIALRQAGFETAVVSEGPKAMPAMRE
                     LKPDLVLLDLMLPGMSGIDVCKAIRAESGIPIVMLTAKSDTIDVVLGLESGADDYMIK
                     PPKTQELVARLRARLRRIDAAPPEKLSIGDLTIDVPGHQVSRDGEQISLTPLEFDLLL
                     ALARKPRQVFTREVLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEHPEVVLTVRGV
                     GYKAGIP"
     gene            5197..6918
                     /gene="mtrB"
                     /locus_tag="VF788_14580"
     CDS             5197..6918
                     /gene="mtrB"
                     /locus_tag="VF788_14580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MtrAB system histidine kinase MtrB"
                     /protein_id="HEX8935386.1"
                     /translation="MRPASEAVSELAAVAGATWRRSLKIRVVSSTVVLSSTVVLVLGM
                     VLQAQLAQRLIENKTQAALLQADNSRILVESELGTVDPTSASLAGRLTTAVDRLTNPD
                     PSGSAPTTAGAGTYEPVLVDGGGLSGEAGTGQKIGPLEDVPAVLRSAAERGALAHKII
                     TVKRGPTMVTMLAVGMPVASAGRTMQLYLLFPLTAEQRTLTLVQSTLVVGGLVLLVLV
                     AGIASLVTRQVVVPIRQAAEVAERFADGHLEERMPVVGEDDIARLGTSFNEMAASIQR
                     QIRQLEEFGELQRGFTSDVSHELRTPLTTVRMAADLLYESRDQLHPVLHRPTELLVRE
                     LDRFEALLADLLEISRVDAGVAELHLETVDVRGTMARAVAAVRAVADRAGTPLEIDQP
                     DDEVLAEIDPPRVERIVRNLLTNALDHGEGHPVRMTLAVDADAVAVLVRDHGVGLQPG
                     QQELVFTRFWRGDPSRDRRTGGTGLGLSISLEDARLHGGWLQAWGAPGQGSAFRLTLP
                     RSPNIKLTSSPLPLGPDDAAWNTQDVLVPDEAVSEEAAPNGAVPDGVVPESDEPDPVV
                     RAGPGHQ"
     gene            6918..>7240
                     /locus_tag="VF788_14585"
     CDS             6918..>7240
                     /locus_tag="VF788_14585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935387.1"
                     /translation="MRGRVLTTLFTAGLVMVLVLFAGCAAIPASSDIEVARSMPSGSG
                     PATPAGPERGVDPFRLVREFIEATGSAANGHAAARAFLSRNAAASWDDHASLTVIEDA
                     PGAAP"
BASE COUNT         1108 a         2304 c         2545 g         1283 t
ORIGIN      
        1 tgctcggtgg tccggttccc gccccgcacc cgcaggcgga gctgtggctt ggtgcgcatc
       61 cggcggactc atcgatactg ctgcacgcgg acggcggcca gaccaccctg ctggaggccc
      121 tgcgcgccga acccggtcgt cacctcggga tcccctgcgc tgcacgctgg ggcagccggt
      181 tgcctttcct gctcaaggtg ctcgcagctg aggagccgct gagtctgcaa gcccacccgt
      241 ccgctgcaca ggccgctgag ggattcgccc gcgaagaggc ccgagggctc ccgcgagacg
      301 ctcccgagcg caactactcc gatgccagcc acaaaccgga actaatctgt gcgctcactg
      361 agctccacgc actggccgga ttccggaacc cgctacggac cgtcgagttg ctcgccgcgt
      421 tggacgcgcc gctgcttgag ccctaccgcg cgatgctcgc cgccgaaccc aatgccgacg
      481 ggcttcgcac cctgttcacc acctggatca cgatgcccga gccggcggtc aaggcactgt
      541 tgcctccgac gctggatgcc tgcgttgcgc tgctgcgccg cgatggggtc ggcggtgctt
      601 tccccacctc gtgcggcggt ccgggtcaag acttccgatc tgagtgccgg gtggctctcg
      661 agctggccga ggcgtacccc ggtgatgtcg gggtgctcgc ggcattgctg ctcaaccacg
      721 tcgtgctggc ctccgggcaa gcgatgtacc tgcccgccgg caacctgcac agctacctgc
      781 ggggcatcgc cgtagagatc agcgccaatt cagacaacgt gctgcgcggc ggcttgaccg
      841 ccaagcacat cgatgttcca gaactgctcc gggtattgga cttctcctac ggcgagctgc
      901 cggtgcagcg tggtgaacgg ctcgggccgc acgagaccgc ctaccggacc cctgctgagg
      961 agttccagct gacccggctc gagtgggcgc agggggagtc gacgccggtc ctgctgcgca
     1021 gctccgcacc acagatcctg ctgtgcacgc aggggtcggc ggatttgcga tcccgggacg
     1081 gtgctcgggt gagtgtgcgc cgtggcgggt cagcatggct ggccgccacg gatcctgacg
     1141 tcatggtgtg cccgggcacc ggtccggtgc agctgttccg ggcgcggccc ggactgattg
     1201 agagctagta caaacctcgg tggccgtgcg gtctgcagcg tcgacactgg tgggaagcct
     1261 cctccttgta ggctcacccg cactgggcga gcgggcattg cgaggaggcg ccgagcgtgt
     1321 cggcaagcgg cggggcaacg gcgatcgttg cggcgttgct ggcaaacgcc ggcatcgcac
     1381 tggcgaagtt cgtcggctac ttgatcaccg gatcgtcgtc gatgctggcc gaggcagtgc
     1441 actcggtagc cgacacgtcc aaccagggcc tgctgctgct cgggcgcaag cgcgcccagc
     1501 gacaagccac ccaggaacat ccgttcggct acggccgtga tcggtatttc tactcctttg
     1561 tcgtggcgtt gttgctcttc agcctcggtt cggtgttcgc gttgtacgag ggcgtccaca
     1621 agctgcagag ccacgatccg ctcagctcgc cactggtggc gatcgggatc ctgatcgtgg
     1681 cgatcgtgct ggaaggtgtg agtttccgga ccgcgatcag ggagtcccag ccgctcaaag
     1741 gtggcgatag ctggtggcag ttcatcaggc agtccaagtc cccggaactg ccggtggtgt
     1801 tgttggagga tgccggagcg ctgatcgggc tgctactggc cttctgcggc atcgggctgt
     1861 cggtgctcat cggggaccca atctgggacg ggttcgggac gataggtatt ggcgtgctgc
     1921 tcggcgtcat cgcgatcatc ctgatcatcg agaccaagag cctgctgatc ggggagggct
     1981 cagattccga tgagctgaac cgcatctgtg gtgcgatggt cgggcccggc gtggataggg
     2041 tgatccacct caggacccag tatctcggcc cggacgagct gttgatcggc gcgaagatcg
     2101 cagtgccggc cgctctgtcc accgccgagg tagctcgaat catcgacgag gccgaggctc
     2161 gggttcgtgg cgccatcccg gcagctcgga tcatctacct ggaacccgac ctggatcgca
     2221 cgccgaccag caccacctga gcgactttca ccttctcggt agtgtccctc atcggccctc
     2281 gcagggagcc tggtcacgga gggggagcgt gcgtgttcga gtcgttgctg gtcgtcaacc
     2341 ggggtgagat cgcgcgacga atcatccgtt ctgccagaga gctgggcatc cgtaccgttg
     2401 cggtgtattc ctcgctggat gccgaactgc cgttcgtcgt cgaggccgat gaggccgtcg
     2461 agctgaccgg gccgccggcg cagatctacc gggatgctcc ccagctcctc gaggtggccc
     2521 gcaagacccg cgcggtggcg gtgcatcccg gctacgggtt tctgtccgag gaccccgggt
     2581 tcgcccggct ggtgggtgat gcgggcctgg tgtggatcgg tcccagtgcc aaggcgatct
     2641 ctgcgatggg tgacaaggtg gctgcgcggg aaatcgtcgc cgccgccggg gtgccggtgg
     2701 cagccggttc tgctggcgcg atggccacgg aagacgctgc ggtcgccgag gccgaaaggg
     2761 tcggcttccc cgtgatgctc aaggccgctg ccgggggtgg tggtatgggc atggcgatcg
     2821 cctccgacgt cgcgacgaca cgtagtgagt acgccagggt cagcgccttc gctcaacggc
     2881 ttttcggcga cccccggctg ttcgtcgagc ggtacttccc ccgagtgcga catgtcgagg
     2941 ttcagatcct cgggttggct gacggccggg tggtcgcgct cggggaacgg gaatgctcgg
     3001 tgcagcggcg gcaccagaag atcgccgaag agagcccttc gcccgctgtc gatccagatc
     3061 tgcgccgccg gatggaacac gccgcggtgc tggccgcgtc cacggtggac tatcacaatg
     3121 cgggaacggt ggagttcctg ctcgatcagg acaccggtga gtttttcttc ctggagatga
     3181 acacccggct gcaggtcgag cacccggtga cggagttgcg gtatggcctg gatctggtag
     3241 ctgctcagct gagtatcgcc gcgggcgctg agctcggttt cgacgtcgag gccctcaccc
     3301 cggttggcca cgcgatcgaa ctgcgggtca acgccgagga cccgaagcgg ttcctgcccg
     3361 gccccgggcc ggtgaccgag tgggtggagc cgacaggaga tgggatccgg gtggactccg
     3421 gttacacggc cggcaacacg gtgacgccgt atttcgactc gttgctggcc aaactggtgg
     3481 tccatggtcg caaccgggaa caggcgctac aacgggcccg ggtggcggtt gctgaattct
     3541 ccgtggccgg accgaagtgc aacctgccct ttcacgccga gctgttggag cacccagaat
     3601 tcatctccgg gcactacgac accgccctgg tagcccggat gcgcccttaa ccacccgctc
     3661 tactcaccgg catgtcccgt ccccttgccc ggggaggagt cgacacaccg tgcgggaggg
     3721 cggacggtgt gggccgggat agcgtgtgac cgtggggcgg ctggtggcca tcgaggggtt
     3781 ggatggggcg ggcaagcgaa ctctcgctga cgcgttgagc gctgcgctcc tcgtgcagaa
     3841 cgcgtcggtg gcccggttgg gtttcccccg ctacgacgcc gacatacacg cccagctggt
     3901 gcgggatgcg ctatacgggc ggctgggtga cctggtcgaa tcggtgcacg ggatggcggt
     3961 gctgttcgcc ctggaccggc gggaagcggc cgaggggttg cgtgcgctgc ggcgtcgcca
     4021 cgacgtggtg ttgctggatc gctacgtggc ttccaatgcg gcatatggtg ccgcgcggct
     4081 gcatgaggac gccggtgggc ctttcgttga atgggtccgt gagctggagg tagagcgatt
     4141 cgacgttccg gtgcctgacg ttcagctgct gcttcgggtt ccgatcagcg tcgcttccgc
     4201 ccgggcggat cgccgtgccg aagccgatag cgcccgccgc aaggacaggt atgagaccga
     4261 ccacgagctg cagacgcgat gcgccgctgt ctatgacggc ctggccgcag ccgggtggct
     4321 cgccccgtgg tcggtcagcg acggtgtcgc aaccgatctg aacgacctgg caatgcggct
     4381 gcttgacgga taaccggaca tgccgccgcc cgaccggcgg gagcgccgcg agcagtgcca
     4441 cgatggtgcg tatggcagct cgtgtgctcg tggtggaaga cgaccctgcg gcggcggaga
     4501 tgttgtccat tgcgctgcgt caggcaggct tcgagacggc ggtggtctcc gagggcccca
     4561 aagctatgcc cgcgatgcgg gagctgaagc cggacctggt gctcctggat ctcatgttgc
     4621 caggcatgag cggaatcgat gtgtgcaagg cgatccgcgc cgaatccggc atcccgatcg
     4681 tgatgctcac tgccaagagc gacaccatcg acgtggtgct gggcctggaa tccggcgctg
     4741 acgactacat gatcaagccg cctaagacgc aggagctcgt ggccaggctg cgagctcggt
     4801 tgcgccgtat tgacgccgcg cccccagaga agctcagcat cggcgacctc accatcgacg
     4861 tgcccggtca ccaggtcagc cgggacgggg aacagatttc gctgactccg ctggagttcg
     4921 acctactgct tgcgctggcc cgcaagccgc gacaggtatt cacccgtgaa gtgctgctcg
     4981 agcaggtatg gggataccgg cacgccgcgg acacccgatt ggtcaacgtg cacgtccagc
     5041 gactccgctc caagatcgag cgagaccccg agcatcctga ggtggtgctc accgttcgcg
     5101 gggtcgggta taaggccggc ataccgtgat gactccacgg ttgtgttcag cgagcagctc
     5161 gcggtgacct cgctcgccgg tcgggcgact gatgcgctgc gtccggcctc cgaagcagtc
     5221 agcgagctgg ccgcggtggc tggggcgacg tggcgccgct ccttgaagat ccgggtggtg
     5281 agcagcaccg tggtgctgtc ctccaccgtc gtgctggtac tcggcatggt gctgcaggct
     5341 cagcttgccc agcggctgat cgagaacaag acccaggcgg cgctgttgca agccgacaac
     5401 agcaggatcc tggtggagtc cgagctcggc acggtggatc cgacctccgc gtcgctggcc
     5461 ggcaggctga ccaccgcggt cgaccggttg accaaccccg acccgagcgg tagcgctccc
     5521 acgacggccg gcgccggtac atacgagccg gtgctggtgg acggcggcgg cctgtctggg
     5581 gaggccggta ctggccagaa gatcggtccc ctggaagacg ttccggccgt gctgcgctcc
     5641 gcagccgaac gcggtgccct ggcgcacaag atcatcactg tgaagcgtgg tccgaccatg
     5701 gtgaccatgc ttgccgtcgg catgccagtg gccagcgcgg ggcgcaccat gcagctatac
     5761 ctgctgtttc cgctcaccgc ggagcagcgc acgctgactt tggtgcagtc cacgctcgtg
     5821 gtcggcgggt tggtgctgct ggtgctcgtc gcgggcatcg ccagcctggt gacccgccag
     5881 gtggtggttc caatccggca ggccgccgag gttgccgagc gcttcgctga tggccacctc
     5941 gaggagcgca tgcccgtcgt cggtgaggac gacatcgccc ggctgggcac ctcattcaac
     6001 gagatggccg ccagcatcca gcggcagatc cgccagctgg aggagttcgg tgaactgcaa
     6061 cggggattca cctctgatgt ctctcacgag ctgcgcaccc ctttgaccac cgtgcggatg
     6121 gcggccgatc tgctgtatga gtcgcgtgac cagctgcacc cggtgctgca ccgtccgacc
     6181 gaactgctgg tgcgggagct tgaccggttc gaggcattgc tagccgatct gctggagatc
     6241 tcccgagtcg acgccggggt agccgagctg cacctcgaga cagtcgatgt gcgcggcacc
     6301 atggcccgtg cagtggcggc ggtgcgcgcc gtcgctgatc gcgcgggcac cccgctcgag
     6361 atcgaccaac cggatgacga ggtgctcgct gagatcgacc cgccgagggt ggagcgaatc
     6421 gtgcgcaacc tgctcaccaa tgcgctagat cacggagagg gtcacccggt ccggatgacc
     6481 cttgccgtcg acgctgacgc ggtcgctgtg ctggtgcgcg atcacggtgt cgggttgcag
     6541 ccaggtcagc aggagctggt gttcactcgg ttctggcgag gcgacccctc gcgtgatcgg
     6601 cgtaccggag gcactgggct gggcctgtcg atcagcttgg aggatgcgcg gctacatgga
     6661 ggctggttgc aagcctgggg tgcacctggg cagggcagcg ccttccgtct cacgctgccc
     6721 cgaagcccca acatcaagct cacgagcagc cccttaccgc tagggcccga cgacgctgcc
     6781 tggaacacgc aggatgtcct ggtgccggat gaggctgtgt cggaggaggc tgcaccgaac
     6841 ggagctgttc ccgacggggt cgtgccggag tccgacgagc cggatcccgt agttcgggct
     6901 ggaccggggc accagtgatg cgcggccgtg tgctcaccac gctcttcacc gcagggctcg
     6961 tcatggtgct ggttttgttc gctggatgtg ccgctatacc ggcgagctcc gacatcgaag
     7021 tggcgcggtc gatgccgtcg ggatcggggc cggccacacc agccggtccc gaacggggag
     7081 tggacccgtt ccggctggta cgtgagttca tcgaggccac tggaagcgcg gcgaacggcc
     7141 acgccgcggc gcgcgcgttc ctgtccagga atgcggcggc cagttgggat gatcacgcca
     7201 gcctcaccgt gatcgaggac gcgcccggtg ctgctccgca
//
LOCUS       DASVXZ010000689         6410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_884898, whole genome shotgun sequence.
ACCESSION   DASVXZ010000689 DASVXZ010000000
VERSION     DASVXZ010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6410
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_884898"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VF788_14590"
     CDS             complement(<1..353)
                     /locus_tag="VF788_14590"
                     /inference="COORDINATES: protein motif:HMM:NF019500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEX8935388.1"
                     /translation="MGAARFAGRTWLLVAGVVVLLSYGLAGYLFFGFRLVDAVYLTLS
                     ALTTEGFATPVTLSDGAKIFTVSLSLFGVTVFVAVLGVLASALVDGQLVHRSRRWSMQ
                     RRITELRDHHIVCAYG"
     gene            complement(361..1170)
                     /locus_tag="VF788_14595"
     CDS             complement(361..1170)
                     /locus_tag="VF788_14595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HEX8935389.1"
                     /translation="MTVLADKVQAFRALHVPGQPLLMPNPWDAGTAKLLASLGFQALA
                     TTSGGHAATLGRLDGAVERGEALAHAASIVAAVDVPVSADLENGFADDPDAVFATVTD
                     AVGVGLAGCSIEDFSGHEIYDAKLAAERVVAAVNAARTGAGLVLTARAENFIRGNPDL
                     ADTIARLQAYQEAGADVLYAPGLSRLDDIRRVITSVDRPVNVLAFPGVATVAELAEIG
                     IARISVGGAFSYVALAALARAGRELLEDGTYGFLDLAAEGRKQAAAAFTPH"
     gene            complement(1397..1651)
                     /locus_tag="VF788_14600"
     CDS             complement(1397..1651)
                     /locus_tag="VF788_14600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935390.1"
                     /translation="MRGSAAHNEVMNVVAIALGVLAILIVLLTGIIPVIGAIFAWIAL
                     IIGVTGLIFGLFSKHANGRNIAILACVLAVLRLALGAVII"
     gene            2493..3503
                     /locus_tag="VF788_14605"
     CDS             2493..3503
                     /locus_tag="VF788_14605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEX8935391.1"
                     /translation="MRRRWITGTVLAAALIAGCGAPPQAAPPPKKELPPAAEPAPAPV
                     PTAQPAGRTVPVGTAPEGVVADSQTHIVAVGVRDPAALTLLDANTGAVLRKVPLPGVL
                     RHLQLAMPGGPVLVPDESSNRLLRVALPGGEVTSQVITGAVPHDATQAANGTVFVANE
                     LGHSVVAVRGDQVVHTFTDVTQPAGVAAVGDLVGLLDVRENTLTVYDAQRLQRVAELP
                     AGAGPTHVVADKRGHLAVVDTRGNAVLLYELSPTIRQIGRVEVPGTPYGVAYDPVRDR
                     LWVTLTALNEVIGLNLDPNAVVSATPLPAVRQPNTIAVDAGTGRLFVTGTADGVLEII
                     EP"
     gene            3519..4580
                     /locus_tag="VF788_14610"
     CDS             3519..4580
                     /locus_tag="VF788_14610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8935392.1"
                     /translation="MRILITGGAGFIGSHIADVLAADGHSVLLLDAFLPQAHGSGSPP
                     AWVAGHELIRGDVRDGELLGRVLPDVDAVCHQAAMVGHGLDPSDAPDYTANNDLGTAV
                     LLAAMHRVGLRRLVLASSMVVYGEGRYACPCHGVVPAVARQAEDIAAGRYEVPCLHCG
                     SDLEPLLVREDAALDPRSTYAATKLAQEQLAAAWARQTGGGVWALRYHNVYGSRMPRD
                     TPYAGVASIFRSALARGAAPQVMEDGWQRRDFVHVSDVAQANALALTAKPPAGRCEPV
                     NVCSGEPHTVGELATELARAMDGPAPVIVGGARPGDVRHVTADPARAAELLGYRARVS
                     FAEGIARFATDPLREPVTA"
     gene            4691..4915
                     /locus_tag="VF788_14615"
     CDS             4691..4915
                     /locus_tag="VF788_14615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935393.1"
                     /translation="MASVLQRQRVPGRETTRGFAAELGHPVEVLLIYRAAYAVATSNV
                     FTPDGSDGHFRWCVAQLTRAEVIAALGLAR"
     gene            complement(4974..5534)
                     /locus_tag="VF788_14620"
     CDS             complement(4974..5534)
                     /locus_tag="VF788_14620"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935394.1"
                     /translation="MNAIHRRLCRSDNWAHRAQFQLLPWALQAVPLDGDVLEIGPGYG
                     VTTRWLAQRAGRLTAIEIDSTLAADLRAELAGQVDVQHGDGAALPFADASFDTVVCFT
                     MLHHMSSAQQQDRLFAGVARVLRPGGMFAGSDSRLSLRFRILHIGDTMVVVDPRTLPD
                     RLRRAGLTDPQMELSDRSLRFQATRR"
     gene            complement(5603..>6410)
                     /locus_tag="VF788_14625"
     CDS             complement(5603..>6410)
                     /locus_tag="VF788_14625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935395.1"
                     /translation="AALLCVLIGSSAGIAVAVTLRALGAEATARAALPFGVLLPGAVW
                     IGVSADGLFAGVLAWGVALLAIGAARDRLDLRAITASAAGGLLLGASLFLSYGLVLAG
                     LLPVAVALAARRVAPLLVAGAGVAAVVAAFAAAGFWWLEGYRQVTLRYYQPGEYGLVR
                     PYGYWVWADLACLAVVLGPAGVAGLRRLFTPGQSQPRILVLLCAAAGIAVLVADVSGL
                     SKAEVERIWLPFAVWLIAAAGLLPTRQARWWLAGQAAVALAVNHLLLTTW"
BASE COUNT         1110 a         2175 c         2148 g          977 t
ORIGIN      
        1 ccgtaggcgc agacgatgtg gtggtcgcgc agttcggtga tccgtcgttg catggaccac
       61 ctccgcgacc tatggacgag ctgcccgtcg accagcgcgc tggccagcac accgaggacg
      121 gccacgaaca ccgtcacacc gaacagcgac aggctcactg tgaagatctt cgcaccgtcg
      181 gacagtgtta ccggtgtggc gaaaccctcg gtggtcagcg ccgacagcgt cagatagacg
      241 gcgtccacca ggcggaagcc gaagaacagg tagccggcca ggccgtagct gagcaggacc
      301 accacacccg cgaccagcag ccacgtccga ccggcgaagc gcgccgcacc catgggacgt
      361 tcagtggggg gtgaaagccg cggccgcttg cttgcgaccc tcggcggcga ggtccaggaa
      421 tccgtaggtg ccgtcctcga ggagctcacg gccggctcgg gccagcgccg ccagggcaac
      481 gtagctgaag gctccgccga ccgagatgcg ggcgatcccg atctcggcaa gctcagccac
      541 cgtggcaaca ccggggaacg cgaggacatt gactggccgg tcgaccgagg tgatcactct
      601 gcggatgtca tcgagcctgc tgagaccggg tgcatagagg acgtctgcgc ctgcttcttg
      661 atatgcctgc agccgcgcaa tggtgtcggc cagatccggg tttccgcgga tgaaattctc
      721 tgcccgtgcc gtgagcacca ggccggcgcc ggtgcgggcc gcattgaccg ccgccaccac
      781 ccgctcggcg gcgagcttgg cgtcgtagat ctcatgaccg ctgaaatcct cgatcgagca
      841 gccagccagc cccacgccaa cggcgtccgt gacggtggcg aacaccgcgt cggggtcgtc
      901 ggcgaagccg ttctccagat cggcggacac cgggacgtcg accgcggcga cgatggatgc
      961 ggcgtgtgcg agcgcctcgc cgcgctcgac ggcaccatcc aggcggccca gcgtcgccgc
     1021 gtggccgccg ctggtcgtcg ccaatgcctg gaaacccagc gaggcgagca acttggccgt
     1081 tccggcgtcc cacgggttag gcatgagcaa cggctgacct ggtacgtgaa gcgcgcggaa
     1141 ggcctgcact ttgtctgcca ggacggtcac agttgcaacc gtagagtcaa gaccacaggc
     1201 acggaaggca cggatgtccc gcgatgacgg gctgccggag gatcacccag cggccgccga
     1261 ctggaccgct cacccaccac acttgatatg gagacttgtc gcatctgctc gggcccgtga
     1321 gcagcgataa gtctccatgt gttaaccgtc tgcgcgccgg cggacacctt gtgggctacg
     1381 gccgggcgat gccctcttag ataatgacag cgccgagtgc taggcggagg acggccagga
     1441 cgcaagccag gatggcgatg ttgcgcccgt tagcgtgttt actaaaaagg ccgaaaatga
     1501 ggccggtcac gccgatgata agcgcgatcc acgcaaaaat tgcaccgatg accggtatta
     1561 ttcccgtcag aagcacgata agaatggcga ggacaccgag ggcgatggca accacgttca
     1621 tcacctcatt atgcgccgcg ctgccgcgca ctgcaccact acagacccgt ctccggagcc
     1681 tcaatcccca tgagagtccc gatgcctaag agctgatcga ccacgcagtg tgataattac
     1741 gtaacctgta gtgatattcg ccactaaact gacgtcttac tgcatcaatg ctaaggtccg
     1801 cttaaatcaa tcggcccacg ccacggtgct atgaggacgg accatgacaa ccgggcaggt
     1861 aacacaccgc cgatcaggca gcccacgttc agcagcgatg acaggcagac ggggccaccc
     1921 tggcacttac caaagctcca caaccgtatc tgctgcttca acgtcctacg ccagatttct
     1981 gtggatcttc accaccctcg gactcatcgt cgtggtcgtc gtcattggct tcctgatcag
     2041 cattgtccga gcactcgaat cgattgatga cggtctgtct acggcgtcta attcggtgac
     2101 gggtgtcgcg gggaatgtcg aggccctccc ggactacatc cgggggatca attctgcgct
     2161 gagcgatatc aatgcatcct tgaagccgat cccaggccag gtggccaaca tcaatgattc
     2221 gttgcagtcg atccgagatt ctgcgggcgg gactggcact tcgttgaaag acacctctcg
     2281 gtctttgacc gacacgtcgg ggtcgctaga gcacacatcg accacgttgg ggccgtaacg
     2341 ccggaaccgg tatgccgttc cggcgctgga gcgatcatct cgtgcacgtc tcgcggtggc
     2401 tcccacgagt gtcagcgtcc ggggtcggag tcagccccta tggtgcgggc cgccggaacg
     2461 gcgccgtgcc gggcgttgaa gaatcatccg gcgtgcgacg tcgctggatc accggaaccg
     2521 tccttgctgc cgccctcatc gcaggatgtg gggccccacc gcaggctgcg ccgcctccca
     2581 aaaaggagct gccaccggcg gccgaaccgg cccccgctcc ggtgccgacg gcgcaaccgg
     2641 ctgggcggac ggtgccggtg ggcaccgccc cggagggtgt ggtggccgac tcgcagaccc
     2701 acatcgtggc cgtgggggtg cgggatccgg ctgcgttgac cctgctggac gccaacaccg
     2761 gtgccgtact gcgcaaggtt ccgttgcccg gcgtcctgcg gcacctgcag ctggccatgc
     2821 ctggcggccc ggtgctggtc ccggacgaga gctccaaccg gctgctgcgg gtggcgctac
     2881 ccggcggcga ggtcacctcc caagtgatca ccggcgcggt gccgcacgat gccacgcaag
     2941 ccgccaatgg caccgtgttc gtggccaacg agctcgggca cagcgtcgtc gcggtgcgcg
     3001 gcgatcaggt cgtgcacacc ttcaccgacg tcacccaacc cgcgggggtg gccgcggtcg
     3061 gcgacctcgt cggactgctc gatgtccggg agaacaccct caccgtgtac gacgcgcagc
     3121 ggctgcagcg ggtggctgag ttgcctgcgg gcgctgggcc tacccatgtc gtcgcggaca
     3181 agcgcggcca tctggcggtg gtcgacaccc ggggtaacgc ggtgctgctc tacgaacttt
     3241 cgcccacaat ccggcagatc ggcagggtgg aggtacccgg tacaccctat ggagtcgcct
     3301 acgatcccgt ccgcgaccgg ctgtgggtga ccttgaccgc gctcaacgag gtgatcgggc
     3361 tcaacctcga ccccaacgcg gtggtcagtg ccactccgct gcccgcggtc cgccaaccga
     3421 acacgattgc cgtggatgcc ggcaccggcc ggctgttcgt gaccggcacc gccgatgggg
     3481 tgttagagat catcgagccg tgacgtagcg tgcgcgggat gcgaatcctg atcaccggcg
     3541 gcgcgggttt catcggctcg catatcgccg acgtgctcgc cgccgacggg cactcggtgc
     3601 tcctgctgga tgcgttcctg ccgcaggcgc acggctcggg atcgccaccg gcatgggtgg
     3661 ccgggcacga gctgattcgg ggcgacgtcc gggacggcga gttactcggt cgcgtgctgc
     3721 ctgatgtgga tgcggtgtgc catcaggcgg cgatggtggg gcacgggctg gatccctctg
     3781 acgctccgga ctacacggcg aacaatgatc tcggcaccgc cgtgctgctg gcggcgatgc
     3841 accgggtagg tctgcgccgg ctggtactgg ccagctcgat ggtggtctac ggcgagggcc
     3901 gctatgcctg cccctgccac ggcgtcgtcc ccgctgtagc ccgtcaggcg gaggacatcg
     3961 cggcgggtcg ttacgaggtt ccgtgcctgc actgtggctc agatcttgag ccgttgctgg
     4021 tgcgcgagga cgctgcgctg gatccgcgca gtacctacgc cgcgacgaaa ctggcgcagg
     4081 agcagctcgc cgcggcatgg gcccggcaga ccggtggcgg tgtgtgggca ctgcgctacc
     4141 acaacgtcta cggctcccgg atgccccgcg acacccctta cgccggagtg gcgtcgatct
     4201 tccggtcggc gctggcgcgc ggtgcggcgc cgcaggtgat ggaggacggg tggcagcgcc
     4261 gggacttcgt gcacgtctcc gacgtcgcgc aggccaacgc gctcgctctc accgcgaagc
     4321 cgcccgccgg gcggtgcgag ccggtcaacg tctgctccgg ggagccgcac actgtcggcg
     4381 agttggccac cgagctggct cgggccatgg atgggccggc cccggtgatt gtcggcggtg
     4441 cccgcccggg tgatgtccgg cacgtgacgg cggatcccgc ccgggccgcc gagctgctcg
     4501 gataccgggc gcgggtgagc tttgccgagg gtatcgcccg gttcgccacc gacccgctgc
     4561 gcgaaccggt caccgcgtga tgaaatctga cagccgctga tttgggtagc gttagcggag
     4621 gcagcaccag gtgtggtctc gacgacgcac ggttgagagg gtgtccggat tcggcaggtc
     4681 acgcgccgga atggcttcag tacttcagcg acaacgggta cccgggcgtg aaaccactcg
     4741 cggcttcgct gccgagttgg gacacccggt cgaggtgctg ctgatctacc gagccgccta
     4801 cgcggtggcc accagcaacg tcttcacacc cgacggcagc gacggtcact tccgctggtg
     4861 cgtggcccag ctcacgcgag ctgaggtgat cgcggctctg ggtctagcca ggtgagtggt
     4921 gaagtggtcc agccggcggg gtttgccaat gtcatggttg gcatccgacc ggatcagcga
     4981 cgggttgcct ggaaccgcag cgagcggtcg ctgagctcca tctgcgggtc ggtgagtcct
     5041 gcgcggcgca gccgatcggg cagcgtgcgc gggtcgacga cgaccatggt gtctccgatg
     5101 tgcaggatcc ggaaccgcag gctgagccgg ctgtccgagc cggcgaacat cccgcccggt
     5161 cgtagcaccc gggcgacccc ggcgaacagt cgatcctgct gctgtgccga ggacatgtgg
     5221 tgcagcatgg tgaaacacac caccgtgtcg aacgacgcgt cggcgaacgg cagcgcggca
     5281 ccgtcaccat gctggacatc aacctggccg gcgagctcgg cgcgcaggtc agcggccagc
     5341 gtcgagtcga tctcgatggc ggtgagccga ccggcacgct gggccagcca gcgcgtcgtc
     5401 acgccgtatc caggtccgat ctccagcacg tcaccatcga ggggcaccgc ctgcagcgcc
     5461 cacggcagca gctggaattg tgcccggtga gcccagttgt ccgaacgaca caagcggcga
     5521 tggatcgcgt tcatcggcat tcccgcacgc taggggaagt atctgcccga ccggaatcgt
     5581 gtttcgcgct ctgacccacc ggtcaccacg tcgtcagcag caggtggttg accgccagtg
     5641 caaccgcggc ctgaccggcc aaccaccacc tggcctggcg cgtcggcagc agcccggcag
     5701 cagcgatcag ccagaccgcg aagggcagcc agatccgctc cacctcggcc ttgctcaggc
     5761 cggagacgtc ggcgaccagc accgctatcc cggccgccgc gcacaacagc accagaatcc
     5821 gcggctggga ctgcccagga gtgaacagcc gccgtagccc ggccaccccg gccggcccca
     5881 gcacgaccgc aaggcacgcg aggtcggccc acacccagta gccgtacggg cgcaccagcc
     5941 cgtactcacc cggctggtag taccggagcg tgacctgccg gtacccctcg agccaccaga
     6001 aacccgcagc ggcgaaggcg gccaccaccg cggccacacc ggcaccggcc accagcagtg
     6061 gggccacccg gcgggcggcg agggcaacgg ccaccgggag cagccccgcc agtaccagcc
     6121 cgtaagacag aaacaggctc gcgccgagta gcaagccacc agcggctgat gcggtgatgg
     6181 cgcggaggtc cagccggtcc cgggccgcgc cgatggccag cagcgccact ccccaggcca
     6241 gcactccggc gaacaggccg tccgcggaca ctcctatcca gacagcgccg ggcagcagca
     6301 ccccgaacgg cagcgcagcg cgcgcggtcg cctccgcacc cagcgctcgc agcgtcaccg
     6361 caaccgcaat tcccgcggat gacccgatga gcacgcacaa caacgcggca
//
LOCUS       DASVXZ010000690         2519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_436802, whole genome shotgun sequence.
ACCESSION   DASVXZ010000690 DASVXZ010000000
VERSION     DASVXZ010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436802"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..>2519
                     /gene="glgP"
                     /locus_tag="VF788_14630"
     CDS             50..>2519
                     /gene="glgP"
                     /locus_tag="VF788_14630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HEX8935396.1"
                     /translation="MRGLRRFTVRAQLPGSLAPLEILATNLRWTWHQPTQDLFASLDE
                     RTWVAVNGDPVRLLGEIPTGRLTALAADQTVVARTAALAEDLRRYLDEPRWYQQRLEA
                     LPTLPTSIAYFSMEFGVSEVLPFYSGGLGVLAGDHLKAASDLGVPLIGLGLLYRSGYF
                     RQSLSLDGWQLEHYPALDPQGLPLRLMTDSIGTPLLVQVGMPGGRVLSARIWRADVGR
                     VPLLLLDSDIEENPDDLRGVTDRLYGGDQSHRITQEILAGVGGVRAVRLFCQLTGHPE
                     PQVFHTNEGHAGFLGLERIRELISAEGLSFDEALTTVRAGTVFTTHTPVPAGIDRFPV
                     DLVRHHFGSSNEIALLPGVEIDRVLALGAEENPGMFNMAHMGLRLAQRANGVSQLHGA
                     VSRAMFRGLWPQFDIDEVPIGSITNGVHGPTWAAREITSLLGESDSSADGTGLNSASD
                     SLLWELRGVLRAKLVDEVRRRVRVAWLERGASAPELGWTSRVFDPHVLTMGFARRVPT
                     YKRLTLMLRDPERLRALLLDPDHPVQLIIAGKSHPADDGGKALIQQVVRFADSPDVRH
                     RMVFLPDYDMSMARYLYWGCDVWLNNPLRPLEACGTSGMKSALNGGLNLSIRDGWWDE
                     LYDGKNGWAIPTADGVENHERRDNLEATALYELIATLVAPQFYDRGADGVPTGWVSLV
                     RHTLTTLRPQVQACRMVQEYVERLYAPAARSAAVVVADSFAGARSLAEYRSRVRAAWP
                     GVRVAQVDISGLPDTPALGSEMTVRAAVVLAGLQPRDVHVQAVIGRVDDRDELRDPLV
                     VTMKPIDTPDSSDGDSEDDRFEATV"
BASE COUNT          374 a          826 c          866 g          453 t
ORIGIN      
        1 gttgcgggga gtgatcccgg tccacctcgg cccgggataa agtccgctcg tgagaggact
       61 gcgccgcttc accgtccgcg ctcaactgcc gggatcactg gctccgttgg agatactggc
      121 caccaacctc cggtggacct ggcaccagcc gacccaggat ctgttcgcct cgctggacga
      181 gcgcacgtgg gtagcggtca acggtgaccc ggtacggctc ctcggggaga ttcctaccgg
      241 gcggctgacc gcgctagccg ccgaccagac tgtggtggcc cggaccgcag cgcttgctga
      301 ggacctgcgc cgctacctgg atgagccccg gtggtaccag cagcgcctgg aggctctgcc
      361 gactctgccc acttcgatcg cctatttctc catggagttc ggcgtctccg aggtgctccc
      421 gttctactct ggaggcttgg gcgtgctcgc cggtgatcac ctcaaggctg cctcggatct
      481 gggggtgccg ctgatcgggc tcgggctgct ctatcgctcg ggctattttc ggcagtcttt
      541 gtcgctcgat ggctggcagc tggagcacta tccggcgctg gacccgcagg gtctgccgct
      601 gcgactgatg accgactcca ttggcacgcc gctattggtg caggtcggca tgcccggtgg
      661 tcgggtgctg tccgcgcgga tctggcgtgc tgacgtcggc cgggtgccgc tgctattgct
      721 ggatagcgac atcgaggaaa accccgacga tctgcgagga gtcaccgacc ggctctacgg
      781 cggcgaccag agccatcgga tcacccaaga gatcctcgcc ggggtcggcg gcgttcgcgc
      841 ggtgcgactg ttctgccagc tcaccgggca ccccgaaccc caggtctttc acaccaatga
      901 gggccacgcc gggttcctcg gtctggaacg gatccgtgag ctgatcagcg cggaaggcct
      961 gagcttcgac gaggcattga caacggtgcg ggccggcacc gtgttcacta cgcacactcc
     1021 ggtgcccgcc gggatcgatc gtttcccggt ggacctggtc cggcaccatt tcggatcatc
     1081 gaacgagatc gcgctgctgc cgggggtgga gatcgaccgg gtgctcgcgc tgggcgccga
     1141 ggagaacccc gggatgttca acatggcgca catggggctg cggctggccc agcgcgctaa
     1201 cggggtttcg caactgcatg gtgccgtgtc ccgggcgatg tttcgtggtt tgtggccgca
     1261 attcgacatc gacgaggtgc cgatcggttc gatcaccaac ggggtacacg gaccgacctg
     1321 ggccgcgcgg gagatcacca gcctgcttgg cgagtccgac agtagcgccg atggcaccgg
     1381 gctgaattca gcctccgaca gcctgctgtg ggagctgcgc ggcgtactgc gcgccaagct
     1441 ggtggacgag gtgcgcaggc gggtccgggt tgcctggctc gagcgcggtg cctccgcgcc
     1501 tgagctgggc tggacctcgc gagtgttcga cccgcacgtg ctgaccatgg gcttcgcccg
     1561 ccgggtcccc acctacaagc ggctcaccct gatgctgcgt gaccccgaac ggctccgagc
     1621 gctgctgctg gatcccgacc acccggtgca gctgatcatt gctggcaagt cacaccctgc
     1681 tgatgacggg gggaaggcgc tcatccagca ggtcgtgcgg ttcgccgact cgccggacgt
     1741 gcggcaccgg atggtgtttc tgcccgacta cgacatgtcg atggcccgat acctgtactg
     1801 gggctgcgac gtatggctca acaaccccct gcggccgttg gaggcctgcg gcacctccgg
     1861 gatgaaatcc gcgctcaacg gtgggctgaa cctgtccatt cgggacgggt ggtgggatga
     1921 gctctacgac ggtaagaacg gctgggcgat cccgaccgcc gatggtgtcg agaatcacga
     1981 acggcgtgac aacctggagg cgactgcgct ctacgagctg atcgccactc tggtcgctcc
     2041 acagttctac gaccgtggcg ccgacggtgt gccgaccggc tgggtgtccc tggtgcggca
     2101 caccctgacc acactgcgtc cacaggtcca ggcctgccgg atggtgcagg agtacgtgga
     2161 acgtctctac gcacccgccg ccaggtcggc cgcggtggtg gtggccgatt ccttcgcggg
     2221 ggcccgctcg ctggccgaat atcgctcgcg ggtccgcgcc gcgtggccgg gcgtgcgcgt
     2281 ggcgcaggtg gacatctccg gcttgcccga cacacctgcg ctcggctcgg agatgactgt
     2341 tcgcgccgct gtcgtgttgg ccggtctgca gccccgcgac gtacacgtcc aggccgtcat
     2401 cggccgggtg gatgatcgtg acgagctacg ggaccccctc gtggtgacca tgaagccgat
     2461 cgacactccc gactcgtccg acggggacag cgaggacgac cggttcgagg cgaccgtac
//
LOCUS       DASVXZ010000691         2713 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1024594, whole genome shotgun sequence.
ACCESSION   DASVXZ010000691 DASVXZ010000000
VERSION     DASVXZ010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024594"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1312)
                     /locus_tag="VF788_14635"
     CDS             complement(<1..1312)
                     /locus_tag="VF788_14635"
                     /inference="COORDINATES: protein motif:HMM:NF014071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEX8935397.1"
                     /translation="MAESSGVCAGVDVGGTFTDVVVHAAGRRPQAVKVLTTPDNQAVG
                     VHRGVTQAWPGTALRLLPHGTTTATNAVLERRLARTVLVTTRGFADVLQIARQDRPAL
                     YDLTITRPEPLVPHDRVVTVVERTSPDGEPVIALTDEEIERVLRQVESLEPESVAVSL
                     LFSYAGDSHERRLCEALAKLDVPITRSSVLLPEFREYERASTCVLNAAVEPVMRRYLS
                     NLSAQLPDPTITVMTSGGGTASVDFAAAAPVHTLLSGPAAGVVAAGAVARSAGFEHAI
                     AFDMGGTSTDVCLIRDGQPEVSTSAQIAGLPFRTPAVGIHTVGAGGGSIAWVDAGGAL
                     RVGPASAGADPGPACYGRGGTEPTVTDAHCVLGHLDPDRDMSGGLRLDVKAAADAIGA
                     LPEAAGGAPGILAVVRATMARALRKVSTERGADPAELALVAYGGA"
     gene            complement(1305..2030)
                     /locus_tag="VF788_14640"
     CDS             complement(1305..2030)
                     /locus_tag="VF788_14640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX8935398.1"
                     /translation="MRTAEPGKVRQQSPQGQALEADRALLGRTSTAERVADVLRTRIT
                     EGFFPPGTRLAEDAIGSGLGVSRNTLREAFQLLTHERLLTHQLNRGVFVRVLTVSDVI
                     DLYRVRKLVECAAVRDIDSPPQSVQEMTAAVVEGEQAKERLDWQGLGTANLHFHQALT
                     ALAGSSRVDELMRGVLAELRLVFHVMADPRRFHEPYLASNREILGRIEIGDGPGAERL
                     LAAYLDSAREQLVDAYARQTPDG"
     gene            2222..>2713
                     /locus_tag="VF788_14645"
     CDS             2222..>2713
                     /locus_tag="VF788_14645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020631712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8935399.1"
                     /translation="MSESVATEATGLFGWFRSLGSEGRRAFVSAFGGFALDSYDFQVL
                     PLGLVAIAESLKISTAAAGLLTTVTLVLSAVGGVGAGVLIDRIGRVQTLLLTVITYAV
                     FTVLCGFAPNFETLLVFRALQGLGFGGEWAAGAILVAEYCSPRYRGRTVGFIQSSWAV
                     GWAL"
BASE COUNT          398 a          927 c          918 g          470 t
ORIGIN      
        1 cggcgccgcc gtaggcgacc agcgcgagtt ctgccgggtc ggcgccgcgc tcggtgctga
       61 ccttacgcag cgcccgagcc atcgtggccc gcaccaccgc gaggatcccc ggcgccccac
      121 cggccgcttc cggtagtgca ccgatcgcgt ccgcggccgc cttgacgtcc aggcgcagcc
      181 ccccactcat atcgcgatcc gggtcgaggt gacccagcac gcagtgcgca tcggtcaccg
      241 tcggctcggt gccgccccgg ccgtagcagg ctggcccggg atcggcgccc gccgaggccg
      301 ggccgacccg caacgctcct ccggcgtcga cccaggcgat cgatccgccg cccgcgccca
      361 cggtgtgaat cccgaccgcc ggcgtgcgaa acggcaaccc cgcgatctgt gcggacgttg
      421 acacctctgg ctgaccatcc ctgatcaggc acacatcggt ggaggtgccg cccatgtcga
      481 atgcgatcgc gtgctcgaag cccgcggagc gggctacggc accagctgcg acgacccctg
      541 cggccggccc ggacagcaag gtgtgcaccg gggcggcggc cgcgaaatcg acgctggcgg
      601 tgccaccgcc cgaggtcatc acggtgatcg tcggatccgg cagctgggcg ctcaggttgg
      661 acaggtagcg gcgcatcacc ggttcaacgg cggcgttgag cacgcacgtc gaggcccgct
      721 cgtactcacg gaactccggg agcagcacgc tggatcgggt gatcggcacg tccagcttgg
      781 ccaacgcctc gcacagccgt cgctcgtggg agtcaccggc gtagctgaac agcaagctca
      841 ccgccaccga ctccggctcc aggctctcga cctgtcgcag tacccgttcg atctcctcgt
      901 ccgtcagcgc aatgaccggc tcaccgtccg ggctggtccg ctccacgacg gtgaccaccc
      961 ggtcatgcgg caccagcggc tcggggcgag tgatggtcag gtcgtagagc gcgggccggt
     1021 cctgccgagc gatttgcaat acatcggcga acccccttgt ggtcaccagc acggttcggg
     1081 ccagcctgcg ttccagcacg gcgttggtgg ccgtcgtggt gccatgcggc agcagccgca
     1141 acgccgtgcc gggccacgct tgggtgacac cccgatgcac acccaccgct tggttgtccg
     1201 gtgtggtgag taccttcacc gcctgcggcc ggcgaccggc tgcgtgcacc acgacatcgg
     1261 tgaacgtccc cccgacatcg accccggcac atactccgga cgattcagcc atcgggcgtt
     1321 tgccgcgcgt aggcatcaac cagctgttcc cgcgcactgt ccaggtaggc ggcgagcagc
     1381 cgctccgcgc cgggtccgtc gccgatctcg atacggccga gaatctcgcg gttgctcgcc
     1441 aggtacggct cgtggaaccg gcgcgggtcg gccatgacgt ggaagaccaa ccggagctcg
     1501 gcgaggactc cccgcatgag ctcgtccacc cgggagctgc cggcgagcgc ggtgagcgcc
     1561 tggtggaagt gcaggttcgc ggtgcccagc ccctgccagt ccagtctttc tttggcttgc
     1621 tcgccctcga ctacggctgc tgtcatctcc tgcacgcttt gcggcggact gtcgatgtcc
     1681 cgcacggccg cgcactcgac gagcttgcgt acccggtaga ggtcgatgac gtcgctgacc
     1741 gtcaacaccc ggacgaacac cccgcggttg agttggtggg tgagcagccg ctcatgggtg
     1801 agcagctgga atgcctcgcg gagggtgttg cgggataccc cgagaccact tccgatggcg
     1861 tcctcggcca agcgggtccc gggagggaag aacccctcgg tgatgcgggt gcgcagcacg
     1921 tcagcgacgc gttccgcggt gctggtgcga ccgagcaatg cgcggtcggc ctccagcgcc
     1981 tggccctgcg gggactgctg ccggaccttc ccgggctcgg cggtgcgcac ggcagcctcc
     2041 cagtggtgcc ggtacggagc agacgacgaa cagtcaatcg cagattgaaa ggtgaagcaa
     2101 ctacttgtcg gattgttcaa cgatcctcta atcttatgaa agtctgattc tccaatatga
     2161 gacaagtacg cttcctgagc tagccaccgc cctacgaggt gacgcaatga gcacttcctc
     2221 gatgtcggag agcgttgcga ctgaggccac cgggctgttc ggttggttcc ggtctctcgg
     2281 gtctgagggc cgtcgcgcct ttgtcagcgc gttcgggggt ttcgcgctgg actcctacga
     2341 cttccaggtc ctcccgttgg ggctggttgc gattgcggag tccttgaaga tctctaccgc
     2401 tgcggctggg ttgctgacca cggtcaccct ggttctctcc gcggtgggtg gcgtgggcgc
     2461 aggcgttctg atcgaccgga tcggtcgggt gcagacgctg ctgctcacgg tcatcacgta
     2521 tgcggtgttc accgtgctct gcgggttcgc tcccaacttc gagaccctgc tggtcttccg
     2581 ggcgttgcag gggctcggct tcggaggtga gtgggcggcg ggcgcgattc tggtcgccga
     2641 gtactgctca ccgcgctacc ggggccggac ggtaggattc atccagagtt cgtgggctgt
     2701 gggctgggcg ctg
//
LOCUS       DASVXZ010000692         3782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_576714, whole genome shotgun sequence.
ACCESSION   DASVXZ010000692 DASVXZ010000000
VERSION     DASVXZ010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576714"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..581
                     /locus_tag="VF788_14650"
     CDS             99..581
                     /locus_tag="VF788_14650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009079493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX8935400.1"
                     /translation="MRNENRIDPTDARLLLALVERPRATAIALTGQTGLSRNTVQARL
                     AKLEQGVLDSFERQIPPTMLGYPLTAFITTQVTQRRLNEVAAALAGIPEVLQVHGISG
                     QIDLLVHVVAADADDLYRIAGQILAIPGVERTNTALVMRELVNYRITPLLRRCAQQAR
                     "
     gene            1425..1775
                     /locus_tag="VF788_14655"
     CDS             1425..1775
                     /locus_tag="VF788_14655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935401.1"
                     /translation="MTDSDPAAARASMPSSASVSNATQPAAGPPLDKSVGAALALTFF
                     FGPLGLFYINVRGAIIAIVVSIVVTLLTLGFGLLFVWPVTMVWAAVTASKKHQEFEEW
                     KIGKLAGGVNQGAA"
     gene            2650..2849
                     /locus_tag="VF788_14660"
                     /pseudo
     CDS             2650..2849
                     /locus_tag="VF788_14660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
     gene            complement(3128..3298)
                     /locus_tag="VF788_14665"
     CDS             complement(3128..3298)
                     /locus_tag="VF788_14665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX8935402.1"
                     /translation="MGFVDKAKDKAEELIGKVKEGTGEATGDEGLKAEGKTDQIKANL
                     KQAGEKIKDALK"
BASE COUNT          736 a         1212 c         1078 g          756 t
ORIGIN      
        1 ataccccacc acctggggaa gtcctgcaca actcggcccg gcaatattga gcagaccgca
       61 cattgcaggt cgaacctgac ccgccgaagg tgagcattgt gcgcaacgag aaccgcatcg
      121 acccgaccga tgcccgcctg ctgctcgccc tggtcgagcg gccccgcgcc acggctattg
      181 cgctcaccgg ccagacgggg ctgtcccgca acaccgttca ggcccggctc gccaagctgg
      241 agcagggtgt gctcgattca ttcgagcgcc agatcccgcc cacgatgctc ggttacccgc
      301 tcaccgcgtt catcaccacc caggtcactc aacgtcggct gaacgaggtg gccgccgcgc
      361 tcgccggcat ccccgaagtg ctgcaggtcc acgggatcag cgggcagatc gacctgctcg
      421 tgcacgtggt tgcggccgat gccgatgact tataccgcat cgccggccag atcctggcca
      481 tccccggcgt cgagcgcacc aacaccgcgc tggtcatgcg ggaactcgtg aactaccgca
      541 tcacgccact gctacgccgc tgcgcacaac aggcacggta gcccacgaca aagtcggggc
      601 caggtcacat gggcgccgtc ctcgtggccg cttcaaccag ttcgaaaacc gtgctcagcc
      661 gccggcattg acggagccga tcaccacggt gatcacgggc atattgccac gcgccacgga
      721 gttggacctt gaactggtag tggtagggct gcaggccggc cttgcgttag gttggctaat
      781 cacgcagtaa acgcgcgtat ggcgagcgca gccggatata gcagccgctg ggagttcccg
      841 ttcgtcggct gggcgagctg ctgtgctgcg tcccgcaccg acgcaagcaa ggacctcgag
      901 atcctgtgct acgccccgac tcagcgtgct gcgtcgccag gtcgtccgtc cgcgaccgcg
      961 gtcgtcgcct gccggctaca cctggcggcg tgacgaccca ccgaaggagt cggtggcttc
     1021 aggcagaagt cggcggcttg cttccaggcg atcaagatcg acttcgacta cgtcggtcgc
     1081 cgcttgagga tattgcaggc gcagagcagt aactcattga gcagtctcaa cgccgcatcg
     1141 actaagcctc catatcttat gcaccgccga tgtgacatgg tggacacctg gctaggccat
     1201 acgagtgaat tgcgtgagtt ggactggcag ctcgtaacat gactcgagat taagcgataa
     1261 ttaacctgag tcaccgttcc tagtcggaaa tggtcaaagg aacatggcca tcgacgtact
     1321 atcgcggtct gaaagtgcgg atagggagaa ggccttaggg cgcatatgca ttagagtcaa
     1381 acaggcgatc atgtatgatc gtctccaaaa acaaggagaa tcccgtgact gactccgatc
     1441 cggctgcggc tcgggcctcg atgccgtcca gtgcttccgt gtctaacgca actcagcccg
     1501 ccgcgggccc accactcgac aagtccgtcg gcgcggcact cgcgctgacc ttctttttcg
     1561 gtccactcgg tcttttctac atcaacgtac gtggcgcgat catcgcgatc gttgtttcaa
     1621 ttgtcgtgac tctcttaact cttggttttg gacttctgtt cgtctggccg gtcactatgg
     1681 tctgggccgc cgtgacggct agcaagaagc atcaggaatt cgaggaatgg aagattggga
     1741 aactcgccgg cggtgtcaac cagggcgcgg cctgaggctc aactgagttg catgagcgca
     1801 atgaggccaa gggcttcttt gactcgtgat aatacttcgc catgccgagg cgcgccatca
     1861 acgcgtgcgc taccatgtat tcggcactct aattatctca gcccaaatct gatcgcacca
     1921 tgggaggaaa gcaacatggc ccgtggactc ggaggggaac gaattcggtg agtgcgcatg
     1981 tttgagggtc cgtacacaaa gttgggcgcg attgccggcg tgctcgctgt cgttgtggca
     2041 atcgtggctc tcatcgttaa cgtacccggc tcagaaccct ggtcccctcc tgcggcgact
     2101 tccacttcag cggcacggac cccttctcgg ggtctcaacc ctccagcggt cacggtcgaa
     2161 acgacggagg caacgtctcc gttaatgact acctacattg aagacctacc ctataccgcc
     2221 gacagtgatc cgtacgataa ccgcgacgta gcgcatatta acggacagtc gtactcgcac
     2281 tcgcaggcgg ctcagttctg tttcggctca cacgagcgta agtggggtta cacgttggaa
     2341 cggggctata cccgtttacg ggcgacggtc ggcctaagcg acaactcagc cgcgggggcc
     2401 gttgtaaagt tcgaggtttt agccgacggg cataatgtct tcgccagaga gatgcaacgt
     2461 gggcagactg cagccatcga cctaccggtc gaaaatatcc tgacggtaac gcttacgtca
     2521 acgcttttat ccgacgaggg tagttgtgga cgggcaaccg gcgagtgggg agaagtacgg
     2581 gtcgaacgct cgtaggacca caactaaagc tattgagtct tacaaaaaaa cgagtcaatg
     2641 tggtggggcc tgttgcccgc cgcctgccat ctcacccagc agtacggcaa tgacctggtc
     2701 gagcagatca tgggtgactc aaggctcggc tgcggccgat gcgcggcctc aaacggcttc
     2761 gctctatccg agtggtcagc accggacgtg ctttcgtcca gaacttgcgc cgcgaccacc
     2821 acgaactcgg catcggatgt cgactctaag catcggctcc cggcggtctt cgccgaactc
     2881 gctcctcgcc tctgattagg gcacctccac cacctgaccg ggccgaacgt gggcgaacgg
     2941 ctcgcggcca ccgaagacgt aacagctgtt gcgctgttgg ctgaaacgac agcagctcat
     3001 ccgccatcgc cgcacctcct ccactggccg ccactcgtcc gtgggctaca agcgggtttc
     3061 cttcaggtgc agcgccggtt cggcgttggc caacggtact tacgttggcc aacgccagtc
     3121 gtaagaccta tttcaaggcg tccttgatct tttctccggc ctgcttgagg tttgccttga
     3181 tctggtccgt tttgccctca gccttgaggc cttcgtcacc ggtcgcctca cccgtgccct
     3241 ctttaacctt cccaataagc tcttcggcct tgtccttggc cttgtccaca aaacccattt
     3301 cgctctcctt gtccgacacc cactcgggtg gtaggtgcat cggtcgaagt tggccgctga
     3361 aaatcggcct tgcgtgaagc tccgtccgca ccggagtgac cggttttcgg tgcaaccagt
     3421 ttcatacccg ccacgtaaga tcgctaagca ccctttgcgt caccgcattg gccccttctc
     3481 cgggcccgtt atgtcccctc tgtcgaattc gtccaaggag tgtaggcacc ggtcaccgtg
     3541 tgggtgccga agacatcggt tccctcccgc aaccggtgat attcgttgat caggccgtcg
     3601 acaggcggat gcgcccccat gaccactact tcaccgttca taccgccccc ggccggccgc
     3661 gccacaccag accatcaagc aactgccact gggcacccgg cggtgctacg accacttcgc
     3721 tcggcgccaa gcgcacgcac ggcgtactgg caccgcgcac agccgccacc gtcacagtca
     3781 gt
//
LOCUS       DASVXZ010000693         3420 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_576720, whole genome shotgun sequence.
ACCESSION   DASVXZ010000693 DASVXZ010000000
VERSION     DASVXZ010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3420
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576720"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VF788_14670"
     CDS             <1..449
                     /locus_tag="VF788_14670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935403.1"
                     /translation="RGDFPPPAPTPRTLEWEPADGDAAPEGEAPQMGLGDLLAEALAA
                     YQESRDVRIDARSAGMSRDDTPPQADAEAGRDLPRYRGTGTRWTAGLVLAPSPSDPDP
                     TDLDPGEADEGDRPEAVTNPLLRLPNLTAEPRWVPPEAGRRSAAGD"
     gene            537..944
                     /locus_tag="VF788_14675"
     CDS             537..944
                     /locus_tag="VF788_14675"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEX8935404.1"
                     /translation="MTDVAVRWSDMDVYGHVNNARVVTLLEEARTELLFNEGARRGAE
                     TLAEGVVVVELRVRYRQPLAYSARPVRVRLWVSELRAASFALDYVVAGAGGDAVSART
                     QLAPYDIGAKRPRRLMPAEREFLAAFRNHGDDG"
     gene            937..1560
                     /locus_tag="VF788_14680"
     CDS             937..1560
                     /locus_tag="VF788_14680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935405.1"
                     /translation="MAELFIPDPVERDDLSVFVARAVRLDSGALVRLRSGIAHLHAWV
                     DTPFDALVTRSVRGTVRPADLTVKGTDLLSAAAVSADTVVDPGGVQDIFWRCALPPDQ
                     GWREVDQVPAEVLTGLADQGVSLAREKHGSPPSALLDQKVITVSGAGFDVGVPMRCLF
                     ALSGMGFVGRHAAAETVRVWATDSWLRLDARYGAVLRRRHALLPLLV"
     gene            complement(1585..3198)
                     /locus_tag="VF788_14685"
     CDS             complement(1585..3198)
                     /locus_tag="VF788_14685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEX8935406.1"
                     /translation="MRRADDRHLASGDETWWRDAAFYQVYVRSFADASGDGVGDLEGV
                     RSRLGYLELLGVDALWLTPFFRSPMVDHGYDISDPRDVDPLFGDLDVFDRLLADAHQR
                     GLRIIIDLVPNHTSNQHEWFQAAVATPPGSPERARYIFRDGCGFGGSQPPNNWASTFG
                     GPAWSQLRSSTGDAGQWYLHLFAPEQPDLNWENPEVVADLERTLRFWLDRGVDGFRID
                     VAHGMAKPAGLPDMPQPIATGSGLLQIDIADPRFDADGVHDIHRMIRKVLDEYPARVA
                     VGEIWVSDDLAFARYVRPDELHIGFNFRLLEATFEADRVREAIEHSLMAVQGSPAPAT
                     WTISNHDAVRPVTRYGGGEAGLKRARAMTLVELALPGPVYLYNGDELGLPNAELPDWA
                     LQDPVWRRSGFTHRGREGCRVPLPWEGGTPPYGFSPTPGTWLPMPPDWADYAVEAQLE
                     DPGSTLSLCRQALELRKGHNAFTGSELEWFGAPPGCLAFRRKAGGLICGLNTSSTAVS
                     LPPGEVLLASGPLPPNGEALPPDTAVWLV"
     gene            complement(3241..>3420)
                     /locus_tag="VF788_14690"
     CDS             complement(3241..>3420)
                     /locus_tag="VF788_14690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="globin"
                     /protein_id="HEX8935407.1"
                     /translation="GHPRLRMRHVPFRIGPTERDSWLRCMRTAVDEADLDDAHRAVLW
                     NYLEMAANSLLNSLT"
BASE COUNT          580 a         1120 c         1152 g          568 t
ORIGIN      
        1 cacgggggga cttcccgccg cccgcaccga cgccgcggac gctggaatgg gaacctgcgg
       61 atggagatgc agcgccggag ggcgaggcac cacagatggg ccttggtgac ctgctggccg
      121 aggcgctcgc tgcgtaccag gaaagtcgtg atgtccggat cgatgcccgc tcggctggga
      181 tgtctcgcga cgacactccc ccccaggctg atgccgaggc cggccgtgac ctgcctcgtt
      241 accgtggaac agggacacgc tggacggcag gcctggtgct ggctccgagc ccaagtgacc
      301 cggatccgac cgatctggat ccaggtgagg cagacgaggg agaccgcccc gaggcggtca
      361 ccaacccact tctgcgcctg ccgaatctga ccgctgaacc acggtgggtt ccacccgagg
      421 cgggtcgtcg gtccgccgcc ggcgattagg ggtagggccc gcacgcttgg atccaacagg
      481 gctggctcgg gcgttgattc gtggttcgac aggctcagag gtagctggca gtgttcatga
      541 cggacgtggc agtgcgctgg tcggatatgg acgtctatgg gcacgtcaac aacgcacgcg
      601 tggtcacgct attggaagag gcgcggaccg agctgctatt caacgagggt gccaggcgtg
      661 gtgccgagac cctcgccgag ggcgtggtcg ttgtcgagct gagggtccgc taccggcagc
      721 cgttggcgta ctccgcgcgc ccggtccggg tgcggctatg ggtcagcgag ctgcgggccg
      781 cctcattcgc acttgactat gtcgtggcgg gtgccggcgg tgatgcggtg agcgcccgca
      841 cccagctcgc cccctacgac atcggcgcga aacggccgcg tcggctgatg cccgccgagc
      901 gtgagttcct ggcagcgttt cgaaaccacg gtgacgatgg ctgagctgtt tatcccagac
      961 cccgtcgaac gggatgattt gagcgtcttc gtggctcgcg ccgtccggct ggacagcgga
     1021 gcgctcgtgc ggctacggag cggaattgct cacctgcacg cgtgggtaga caccccgttt
     1081 gatgctctgg taactcgttc ggtgcgcggt acggtacgtc ctgctgatct caccgttaag
     1141 ggaacggatc tgctctccgc ggcggccgtg tccgccgaca cggtagtcga ccctggcggg
     1201 gtgcaggata tcttctggcg ctgcgcgcta ccgccagacc agggttggcg tgaggtggac
     1261 caggtgcccg ctgaggtact aaccggactt gccgaccagg gtgtttcgct ggccagagag
     1321 aagcatggat cgccgccctc cgcgctgcta gaccaaaagg tcatcacggt cagcggagcc
     1381 ggtttcgacg tcggagtccc gatgcgttgc ctgttcgccc tgtccggcat gggattcgtg
     1441 gggaggcacg ccgcggctga gaccgtccgg gtatgggcca ccgactcgtg gctgcgtctg
     1501 gatgcccgct acggcgcggt gctgcgtcgc cggcacgccc tacttccgct gctcgtctga
     1561 ggtgcctgat atgtgggtcg gtgattagac caaccagacc gcagtatcgg gagggagcgc
     1621 ctcaccgttg ggtggaagcg ggccgctggc cagcagcacc tctccagggg ggagggacac
     1681 cgccgtcgaa gaggtattca ggccgcagat cagcccgccg gccttacggc ggaacgcaag
     1741 acatcctggt ggagcaccga accattccaa ctcggagccg gtgaacgcgt tgtgcccctt
     1801 gcgtagttcc aaggcctgcc ggcacagcga caacgtcgag cccgggtcct ccagctgagc
     1861 ttccacggca taatcagccc agtccggagg catcggcaac caggtgccgg gcgtcgggct
     1921 gaacccgtac ggcggagtgc cgccctccca cggcagcggg acccggcagc cctcgcgtcc
     1981 ccgatgggtg aacccggaac gccgccacac cggatcctgc agcgcccaat cgggcagctc
     2041 ggcattcggc agacccaact cgtcgccgtt ataaaggtag acgggcccgg gtagggcgag
     2101 ctccaccagc gtcattgccc gcgctcgctt caggcccgcc tcaccgccgc cgtagcgggt
     2161 caccggacga accgcatcgt gattggagat cgtccaggtc gccggtgccg ggctgccctg
     2221 gaccgccatc aacgagtgct cgatggcctc acggaccctg tccgcctcga acgtcgcctc
     2281 cagcagccgg aagttgaacc cgatgtgtag ctcatcgggg cgcacgtagc gagcgaaggc
     2341 gaggtcatcg ctcacccaga tctcgccgac cgccacccgt gccgggtact catcgagcac
     2401 tttccggatc attcggtgga tgtcgtgcac cccgtcggcg tcaaagcggg gatcggcgat
     2461 gtcgatctga agcagaccgc taccagtcgc gatcggctgt ggcatgtccg gcagcccggc
     2521 gggcttggcc atcccgtgtg ccacgtcgat gcggaacccg tccacccccc ggtccaacca
     2581 gaaccgcagg gtccgctcga gatcagcgac cacctccggg ttctcccagt tcaagtctgg
     2641 ctgctcaggt gcgaacagat ggagatacca ctgcccagcg tcgcccgtgg aggagcgcaa
     2701 ctggctccac gccggtccgc cgaaggtgct ggcccagttg ttcggcggtt gtgacccgcc
     2761 aaatccgcag ccgtcccgga agatgtagcg ggctcgttcg gggctgcccg gcggtgtcgc
     2821 cacggctgcc tgaaaccact cgtgctggtt ggacgtgtga ttgggaacca ggtcgatgat
     2881 gatccgcaat cctcgctggt gcgcatcagc gagcaaccga tcgaaaacgt ccagatcacc
     2941 gaagagcggg tcgacgtcgc gcggatcact gatgtcatag ccatgatcca ccatcgggga
     3001 gcggaagaag ggcgtaagcc atagcgcgtc cacgcccagc aactccaagt agcccaatcg
     3061 gctgcgcacc ccctccagat cacccacccc gtcgccgctt gcgtcggcga aggaacggac
     3121 atagacctgg taaaaggcgg catcgcgcca ccaggtctcg tctccggagg ccaggtggcg
     3181 atcgtcggca cgtcgcacgg gagctaatcc tgccagtgga atcgtcacga tcgtcggcaa
     3241 tcaggtcagc gagttgagca ggctgttcgc tgccatctcc agatagttcc agagcacggc
     3301 acggtgggcg tcgtcgagat cggcctcatc caccgcggtg cgcatacagc gcaaccagga
     3361 gtcgcgctcg gtcggcccga tccggaacgg tacgtgccgc atccgcagcc gtgggtggcc
//
LOCUS       DASVXZ010000694         2382 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_168062, whole genome shotgun sequence.
ACCESSION   DASVXZ010000694 DASVXZ010000000
VERSION     DASVXZ010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168062"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VF788_14695"
     CDS             <1..195
                     /locus_tag="VF788_14695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935408.1"
                     /translation="LVAEGAPLLHPGEQVFESMLAGWRDQQLSQAASRRAAVDDSNVI
                     DVHATASGADYLTYPHRHQA"
     gene            219..848
                     /locus_tag="VF788_14700"
     CDS             219..848
                     /locus_tag="VF788_14700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005159395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8935409.1"
                     /translation="MRDTPTNNWRNTIHDWARDLDLEHLEQIRQDPAVFAPSGVLHLI
                     FEVLAYAGEEAINNGSGQALVTLHCDGSVSVADNGRGTDTRVDDQGRTIKKPVIATKD
                     LRFFDSPGPVLLPDGHPRRGMSVAAALSEWLVHTNRRRNGSWTQRYQHGIPVTDLTSI
                     PDDGTTGTTLRLLPDTALVSNTQIIPPKLRQLTTAFRPHLSVDVHEQHA"
     gene            complement(941..1738)
                     /locus_tag="VF788_14705"
     CDS             complement(941..1738)
                     /locus_tag="VF788_14705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935410.1"
                     /translation="MNHLAVDVDPSSWLVVLVVLLIAAVVDAALGAIGAAANRVRTSD
                     EFLLWVIGGAIGGVLAVFGWIGIIVGVCVLFGQSVSVATAATIGLIIVGIAGMLGAAI
                     SPLLDDTDSVVVWLFSFLIKWVQSPLLTTVGLVASLIVVIRLGTVDFRRGMLFIKIGP
                     GDGALTLGAVVWTQSGRFDPDNTVPDRLARHEATHSRTVAAIGELGFYLTYVTIGAIW
                     ARRRAARGMISTRPAMAIRSRRRRTPSPTPRAPLRSPTTVETRPDLR"
     gene            complement(1735..>2382)
                     /locus_tag="VF788_14710"
     CDS             complement(1735..>2382)
                     /locus_tag="VF788_14710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8935411.1"
                     /translation="GGQGLNLGVQDAMNLGWKLAAHVRGRAPDGLLDSYHTERHPVAA
                     RVLAMTRAQGVLMSPPPDADDVRALRDIVIDLARLPDANRYLAGLMSGLDLRYDLGDA
                     DPLVGTRMVDLTLQTEEGCTTVSTLLRAGRALLLELGGHPSPSTPVPDSVERVVARVI
                     DSPVGSALGAASGVDRLLIRPDGHVCWAGAGPDSSPESALQRWLPRSRECGPSRQ"
BASE COUNT          488 a          808 c          724 g          362 t
ORIGIN      
        1 ttagtggctg agggcgctcc cctgctacat cctggtgaac aggtgttcga atccatgctt
       61 gccggttggc gagatcagca actgtcgcaa gccgccagcc gccgagccgc tgttgacgac
      121 agcaacgtca tcgacgtcca cgccaccgcg agcggcgcgg actacctgac ctacccccac
      181 cggcaccagg cctgaccgtg acaatgacaa cgcgatgggt gagagatacc ccgaccaaca
      241 actggagaaa cacgatccac gactgggctc gggacctgga cctcgaacac ctcgagcaga
      301 tccgccagga tccggcggtc tttgccccca gcggagtctt acacctcatc ttcgaggtac
      361 tcgcctatgc gggcgaggaa gcgataaaca acggttccgg gcaagctctc gtcacactgc
      421 attgcgatgg atcggtgtcg gtcgcggaca acggacgagg caccgacacg cgcgtcgatg
      481 accaggggcg aaccattaaa aagcccgtca tcgcaaccaa agacctcagg ttcttcgact
      541 ccccagggcc agtgttgctc cctgacggac acccacgacg agggatgtcc gtagccgcag
      601 cacttagtga atggctggtg cacaccaatc gacgtcgcaa cggatcctgg acccagcgct
      661 accaacacgg catcccagta acagacctca catctatccc cgacgatggc acgaccggaa
      721 ccaccctgcg actcctgcca gatacagccc tcgtctcaaa cacccagatc ataccgccca
      781 agctacgcca gctgaccact gccttccgcc cacacctctc ggtcgacgtt catgaacagc
      841 acgcttaagc gccgagaatg caaacttcgg cacagccgaa tacgtgcggt taccagttgt
      901 agccagcaag aagcgagtga cggtcagcgc gccggtccac ctatcgcagg tccggacgtg
      961 tctcaacggt cgttggtgaa cggagcggtg cccggggcgt cggtgaaggt gtgcgccgtc
     1021 ttctcgaacg gattgccatg gccggtcgcg ttgagatcat tccacgagcc gccctgcgcc
     1081 gcgcccagat ggcgccgatc gtgacgtacg tcagatagaa accgagctcc ccgatcgccg
     1141 ccacagttcg gctgtgtgtg gcctcgtgcc gggccaggcg gtccggcacc gtgttgtccg
     1201 ggtcgaagcg accagattgg gtccagacca cggcgccgag ggtgagcgcg ccgtcaccgg
     1261 gaccgatctt gatgaacagc atgccgcggc ggaagtccac ggtgcctagc ctgatcacca
     1321 cgatcaggga cgcaacgagg ccaacggtgg tgagcagcgg tgattgcacc cacttgatga
     1381 ggaagctgaa caaccacacc accacactgt cggtgtcgtc cagcaacggg ctgatcgcgg
     1441 ccccaagcat gcccgcaatc ccaacaatga tcagaccgat ggtggcggcg gtggccacgc
     1501 tcacgctctg tccaaatagg acgcagacac caacgatgat gccgatccag ccgaacaccg
     1561 ccagcacgcc gccgatcgca ccaccgatca cccacagcag gaactcgtcg gaggtcctca
     1621 cccggttcgc tgccgccccg atcgctccga gcgctgcgtc gacgacggcg gcaatcagca
     1681 gcacgactag aacgaccagc cagctcgacg ggtcgacgtc gaccgcgagg tggttcattg
     1741 acggctcggc ccacattcgc gagaccgggg caaccaccgc tgcagcgcag actcaggtga
     1801 tgagtcaggc ccggcgcctg cccagcagac gtggccgtcg gggcggataa gcaggcggtc
     1861 gacgcctgag gctgcaccca gtgcgctgcc tacgggcgag tcgatgacac gtgcaacgac
     1921 ccgctcgacg ctgtcgggaa ccggcgtcga gggcgacggg tgaccgccga gttctaggag
     1981 gagcgcccgc ccagccctca gtagcgtgct gaccgtggtg caaccctcct cggtctgcaa
     2041 agtcaaatca accattcggg tgcccacgag tgggtcggcg tcaccgaggt catagcgtag
     2101 gtccaatcca gacatcagcc cggcgaggta acggttggcg tccggcagcc gggcgaggtc
     2161 gataacgatg tcgcggagcg cccgcacgtc atcggcgtct ggcggtgggc tcatcaggac
     2221 gccctgcgcg cgcgtcattg cgagcacccg agcggccacc gggtgccgtt cggtgtggta
     2281 gctgtcgagc agcccatccg gcgcgcgacc ccgcacgtgg gcagcaagtt tccagccgag
     2341 attcatcgca tcctgcacgc cgaggttgag gccctgccca cc
//
LOCUS       DASVXZ010000695         2131 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_77899, whole genome shotgun sequence.
ACCESSION   DASVXZ010000695 DASVXZ010000000
VERSION     DASVXZ010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77899"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..799)
                     /locus_tag="VF788_14715"
     CDS             complement(<1..799)
                     /locus_tag="VF788_14715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935412.1"
                     /translation="MRKRKVFLIAGACLASLSLAVGSAMADPSTTPRNLNGTGSDTTQ
                     GVMNALSNVVSLASPPNGGTAGLQIGSWDAATAPGQSFNTGKAGCSAVSRPSGSNNGI
                     IALVNDRNAGTHCLQFARSSSDNHTSHVGDHLTYIPFATDAVAYAIRGPGGSPTGSSI
                     NRNLSVSTLKTIYTQTGTTCAAAFLPLLPQFGSGTRKFFLENVLGLGAGADVANYAGP
                     GGLHPCVKDTDSAGNPLLENTGNLLTDDKQIEPYAVSSWIAQTTKNVP"
     gene            complement(1723..>2131)
                     /locus_tag="VF788_14720"
     CDS             complement(1723..>2131)
                     /locus_tag="VF788_14720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935413.1"
                     /translation="QASKTPGGPPAPQSNLPGNVPGGAIGSTDGPSSALGSDTTTTNS
                     GSGQPSSPGAVVPSPGPNSPAPTGPNLVQQPVAVRRTPPLPAPAVGALLLTILISGAL
                     AAASSPVLQSPVVLRLGAVMRRLLRKEATPTDQ"
BASE COUNT          383 a          660 c          706 g          382 t
ORIGIN      
        1 cgggcacgtt cttcgtggtc tgcgcgatcc acgacgacac cgcgtaaggc tcgatttgct
       61 tgtcgtcggt gagcaggttg ccggtgttct ccagcagcgg attgccagcc gagtccgtgt
      121 ccttgacgca ggggtgcaga ccgccggggc cggcgtaatt cgccacgtcg gcgccggcgc
      181 ccagcccgag cacattctcc aggaagaact tccgagtccc cgagccgaac tgcggcagca
      241 atggcaagaa ggcagcagcg cacgtcgtgc cggtctgcgt gtagatcgtc ttcagggtcg
      301 acacggacag gttccggttg atgctactgc ccgtcgggga gccacccggc ccccgaatag
      361 cgtaggcaac cgcatcggtc gcgaacggga tgtaggtcag gtgatccccg acatggctgg
      421 tgtggttatc ggacgacgac cgggcgaact gcaggcagtg ggtgcccgca ttccgatcat
      481 tgaccagcgc gatgatgccg ttatttgaac cagacggccg ggagacggcg ctgcaacccg
      541 ccttgccagt attgaacgac tgccccggtg cggtggcggc atcccacgat ccgatctgca
      601 agcccgcggt cccaccattg ggcggcgagg caagcgagac gacgttggac agggcgttca
      661 tcacgccctg ggtggtgtct gacccggtcc cattgaggtt ccgaggggta gtactggggt
      721 cggccatagc cgaaccgacc gcaagtgaaa ggctcgccag gcaggcgccg gcgatcaaga
      781 agactttcct cttacgcatg tggtgctatc cttttcaacg caggtatgca cggacagtcg
      841 tccgggcaca atcgtcagcg gcggacaaat cacgtggtca ctgacgtctt gcttgcaaag
      901 tcggccgagc cggtggctgg gagcggacac tcccggtcac tgctcggttg gcctcacccc
      961 ccttcgcagg acacgtcgga ccgcgacgcg gagccggttt acgaccggta actgcaaaac
     1021 cggcgacgac gtcgccacca gcgcaccgct gatcaggatt gtcaggagca gcgctcccac
     1081 ctcaggaacg ggcaacgctg gcgtgcgccg cgccccggca accgagtgct gagccgcgtc
     1141 aggtgacgcg acggggaaac gatcggcggt ctggacgaca tatcccgggg tcagcgacat
     1201 ccaatgatcg tgcccattct gtaacgtctc tccgacgccg cgcgggaggc ttaccttcag
     1261 gctaagagtt tgatcagtaa tcacgcacct cccacacgaa tattgacggc ataactctcc
     1321 cctgccgagg tgaacagaaa ttatccagaa gtcggtcaag ggacggctaa aatcggttgc
     1381 agttgattgc cagcgagtat gccatgggat atggtccccg atcagcgcgt tgatgccgtc
     1441 ctccggttcg cgcagccgac gcatttcggt gcatactcgt gtggccttgg tggaaatcgt
     1501 ctgtccggtt tgcagtggtg ggatcgtatg acccaatttg cagggatccg ccggtggtcg
     1561 gaagcaggct cccctttcgc atcgtttgcg atcctcacca cgcagggatg ctcggacggc
     1621 cgcccgaaca caattcgcca gcgacgtacc aaatcaccgt ggtcactgat gtcttgcttc
     1681 gcggaagtcg gccgagcagg tcgtcgggag cagacacccc ggtcattggt cggttggtgt
     1741 cgcctccttc cgcaggagac gtcgcatcac ggcaccaagc cggaggacga ccggcgactg
     1801 cagaaccggc gaggacgccg ccgccagcgc accgctgatc aggattgtca ggagcagcgc
     1861 tcctaccgcg ggagcaggca acggtggcgt tcgccgcacc gcgaccggct gctggaccaa
     1921 gttgggcccg gtgggggccg gactattggg acctggggac gggacgaccg cgcccggtga
     1981 actaggttgt ccgctgcccg agttcgtcgt ggttgtatcc gagcccagtg ccgagctggg
     2041 gccgtcggtc gagccgatgg cgccgcctgg gacgtttcca gggaggttcg actgcggtgc
     2101 cggtgggccg cccggggtct tgctggcctg c
//
LOCUS       DASVXZ010000696         4262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_168284, whole genome shotgun sequence.
ACCESSION   DASVXZ010000696 DASVXZ010000000
VERSION     DASVXZ010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168284"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            852..1178
                     /locus_tag="VF788_14725"
     CDS             852..1178
                     /locus_tag="VF788_14725"
                     /inference="COORDINATES: protein motif:HMM:NF016875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEX8935414.1"
                     /translation="MAITWRGNNALRYIGSCCVPSPTRTPNESGDANAHVGSTSTPNA
                     ALRKLLILDAAETLDDARIPPGNRLEKLQGDRSGQYSIRVNQQWRICFRWSAAGPEDI
                     EITDYR"
     gene            1191..1493
                     /locus_tag="VF788_14730"
     CDS             1191..1493
                     /locus_tag="VF788_14730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007027387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HEX8935415.1"
                     /translation="MSTAAPMAPIHPGEILAEEYLAPLGVTQHALAVALHVPPRRINE
                     IVHGKRRISADTALRLARYFGTSERFWINLQGRYDLEVERDRLASVLDEIHPRASA"
     gene            2022..2252
                     /locus_tag="VF788_14735"
     CDS             2022..2252
                     /locus_tag="VF788_14735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935416.1"
                     /translation="MAVDDLLHLAAIVTDWMLRDHGVDVESRQTARPLGMQARSGLAV
                     SIQVLGLFRITRSELPVSVAWEVKKARDLLKI"
     gene            complement(3137..3874)
                     /locus_tag="VF788_14740"
     CDS             complement(3137..3874)
                     /locus_tag="VF788_14740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935417.1"
                     /translation="MDLPTDAVFAFDPFGVAVAAEPAHPSDFGVFPVEMIEDFGGRDD
                     EELVVAEGEAGANDAAVPDEEELVVAEGEAGVDDAAVPDEEESVVAEGEAGADDAEAG
                     QGVPLALACVPLVDVDACWLGVDAWVVAAGVAAGTDALTCWVTAWAGVGATDVWGVGA
                     CTVGTDAEGACAGGTCAVGARTAVACSVIILSTQPATMIASSAQTTALPPRSFLRSGG
                     GSNFASSGTVIVLPRQSALRDRELRSI"
     gene            3988..>4262
                     /locus_tag="VF788_14745"
     CDS             3988..>4262
                     /locus_tag="VF788_14745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935418.1"
                     /translation="MTRNVRHSQRAHLVDVYCLGVKNALGPRIMNERDLPAFLRRFFT
                     PFDKVSAPLAAAPLELARHLVWGAVDYAGQLGFEPAPDFELAAGHLGP"
BASE COUNT          826 a         1399 c         1289 g          748 t
ORIGIN      
        1 tcaatagctc gtctccccag accgaactca caccggctgg ctgccctgag cttgccgctc
       61 ggttacaccg gactcctccc cccttccagc gcccgagcta ctggacgcac ggtcgattcg
      121 gcaacatgca acacggttgt agtagccgta tagtgccgcg tttcaatcac catccgaagt
      181 tgccctagga gcgcacccgg tatccatcaa tcatactcag ccggccgtta ctggaccacg
      241 cattgatggg tggtcagaat ttcaacagtg gccaattctc gacgcgcgta gcgatgaatg
      301 tccctggccg aaaactgaga cgacacacga aataaacaat caagaaaact gccgtctgcg
      361 cacgtcaaac acagtgacta ggggcggggt cgaaccgccg accttccgat tttcagttca
      421 aagtccacct gttaggagta gcactacccg gcattttgct tgccgtggtt gcgcggttga
      481 ggcaccgaaa gcgtttagag aactggagta ttggacagtt cgttggacag cctgatcgga
      541 cactgcggtg acccttccac gctgtggcga gctcagtgct cgcgttccaa ggttgtgcac
      601 tgacaccgcc tcggcatcct cttcaccgag cgaatggaca ctgcacgaat gaacatcgga
      661 tcctctgctc acctcgcaga accgaccgta ggcttcgcga ccagctgaag gcattccgcc
      721 ggtggctgac gtccaaagcc tggacggtct ggtgctgtca tcgatggcgt acccgactcg
      781 gtgctccccg cgccgggcag cacgcgagtc ggggtgcagg aagcgatcgg ttcagccacc
      841 accagccgaa catggccata acgtggcgcg gtaataacgc gttgcgttat attggttcgt
      901 gctgcgttcc ttcgccgaca aggacaccga acgagtctgg cgacgcgaac gctcacgtcg
      961 gctcgaccag cacacccaac gcggcgctac gcaagctgtt gatcctcgac gcggcggaga
     1021 ctctcgacga cgcaaggatc ccgccgggca accgactaga gaagctacag ggagaccgtt
     1081 ccgggcagta cagcatcaga gtgaaccagc agtggcgcat ctgctttcgc tggagtgcgg
     1141 caggaccgga agacatcgag atcaccgact accgctgaag gaggaagctc atgagcaccg
     1201 cagcgccgat ggcccctatc catcctggcg aaatcctcgc cgaggagtac ctcgctcccc
     1261 tgggcgtcac ccagcacgca ctagcggttg ctctgcatgt gccgccgcgt cggatcaatg
     1321 agatcgtgca cggcaaacgg cgcatcagcg ccgacaccgc gctgcgtctg gcacggtact
     1381 tcggaacctc cgaacgcttc tggataaacc tccaaggccg ctacgacctc gaagtcgaac
     1441 gcgaccgtct cgcctccgtc ctcgacgaga tccatccacg cgccagcgcc tgagttcccc
     1501 gacgcgcaag tccgcatcgc agcgcggtcg tagcaccacg gttgcaacaa cctgggcact
     1561 gatcacgcag ccgctgttgg cctacgcgag ccaaggtgga cagcgggagg agcagcatcg
     1621 gaaggtgcac gcccaacgtg acaacgggca accgcaaccc ccacccttgc aaaggctcgc
     1681 agggcttcgg catgggcccg gatggcctca cccacttgcc gagcggcacg tgtctctgcg
     1741 gcgtgggcga cgacgtcgcg cataccgtcg gccaccggtg cggcgaccgc actggccttc
     1801 tcggctcgca atatgacggc aggacggcgc agcgaccacg ttccggatgg tcggtgacct
     1861 ggtgaacctg ggcaggctgg tggtcagaag ccgcgccgcg gtccgccagt gcggtgatcc
     1921 gcgcgcgcgg tctggagtca ctcggtcttc gcgttgctgc ctgctgctga ggcgactggc
     1981 ggcaagccga tgcccagtgc agcaacactc agcgcagccc cgtggccgtc gacgatctac
     2041 tccacttggc ggcgatcgtc accgactgga tgcttcgcga ccacggcgtc gacgtcgaat
     2101 cccgacagac cgctaggccg ctcggtatgc aggcccgttc cgggcttgcg gtgtccatcc
     2161 aggttctcgg cttattccgg ataacccgca gcgagttgcc agttagcgtc gcatgggaag
     2221 tgaaaaaagc ccgagacttg ttgaagatct gattacgcgc atcttactgg cagcgcgata
     2281 ttcgagcgct agaaaacaca ctgtgcgatc tcccgagcgg catagaccgt ccacgacgcc
     2341 ggtccgacgg cagtacacac tggatgcagc tgagcgacag cccgatgccg tccgccagca
     2401 gagcggcgag tcgggtgtcc atcaggtggc ccgcgcggtc gttgtgcggg ccctccgcca
     2461 gcgaccgaga tttcgtggtt cttcgcagca aagctgggag cgggtgaggg tgccagggcg
     2521 gcacgctgct ggaatgagcg gttgagaggc ctggggtctt tgcgatccgt gtcacggcca
     2581 agcgatcacg accgtgaagg acagggtgag tagtgacgct accgcgtcga tgacggctgc
     2641 gttgttcgga cttgagaatt tagcgtgttg ggcgcggctg aggccggcgg tgagccggag
     2701 ttgctcgtgg agaccggcgt tgatctggtg gtataggtgg tgacggccag acgcggggga
     2761 ggggcagccc ggccgtcacc tttctgggcg acgaccggag ggggcagccc ggccgtcata
     2821 cgggaagcct actgacgccg ggtgggctgt tagttaggag tcacttaggc cgagcttaga
     2881 tcgttggcct cggagcctaa gttgcagcgg ggacatttcg aatcttcgct acgtcctcgt
     2941 gcgtactcgt cgcgtcactt ctctcacgcc gtgttgatgc ccaaccacca cttgccgaac
     3001 ctagataagc atcgcatcgg gcagcgctga aggtaccggc atcgtggatc atgagcgtgc
     3061 tttccttgcc cggtggcggc gctaaggaag acttaagcaa ttgctaatcc gtgcgaaaga
     3121 cggcgtatgt aacttcttag atcgaacgca attcccggtc acgcagcgcg gattgacgag
     3181 ggagaacgat gaccgtgccg gaggatgcaa agttcgaccc gccacccgac cgcagaaacg
     3241 atcgtggggg taaggccgtc gtctgggcgc tgctcgctat catcgtggct ggctgtgtgc
     3301 tcaggatgat gacgctgcac gccacggcgg tgcgggctcc caccgcgcag gtccccccag
     3361 cacaggcccc ctcagcgtca gttccgacgg tacaagcccc aacgccccag acgtccgtgg
     3421 ctccgactcc agcccatgcg gtgacccaac aggtcaacgc atccgtcccc gcagcgacac
     3481 ccgcggctac gacccaagca tcaacaccga gccaacaggc atccacatcc accaacggga
     3541 cgcaggctag cgccaacggc acgccctgcc cggcctcagc atcgtcagca ccggcttccc
     3601 cctcggcgac aacagactcc tcctcatcag gcaccgcagc atcgtcaaca ccggcttccc
     3661 cctcggcgac aacaagttcc tcctcatcag gcaccgcagc atcgttagca ccggcttccc
     3721 cctcggcgac aacaagttcc tcgtcgtcgc ggccaccgaa atcctcgatc atctcgaccg
     3781 ggaagacacc gaagtcagac ggatgggcgg gctcggctgc caccgccact ccgaaagggt
     3841 cgaaggcgaa tacggcgtca gtcggcaggt ccaaaactca ctgatagtgg acattcggcg
     3901 ccgggagttt ccgtatcctg ccgggcatga ccgtcggctt gaggaccctg ttcgacctcg
     3961 gcgtagccac cgaatctact gatcctcgtg acccgcaatg tccgccactc ccaacgcgcc
     4021 cacctcgtcg acgtgtactg cctcggtgtg aaaaacgcac tcggcccccg aatcatgaac
     4081 gagcgagacc tgcctgcctt cctccgccgc tttttcaccc cgttcgacaa ggtgtcggca
     4141 cccctggcgg cggcgccgct ggaactggcc cgtcacctgg tgtggggcgc ggtcgactac
     4201 gctggccagc tcggcttcga gcctgcgccc gatttcgagc ttgctgccgg gcacctcggg
     4261 cc
//
LOCUS       DASVXZ010000697         1812 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_576870, whole genome shotgun sequence.
ACCESSION   DASVXZ010000697 DASVXZ010000000
VERSION     DASVXZ010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576870"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VF788_14750"
     CDS             <1..215
                     /locus_tag="VF788_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEX8935419.1"
                     /translation="DHWSEGGLGEAVLSVLAAHPQRPPIRTLAVGGMPVSGKPAELLH
                     AAGIDAEAITTAARQLLNQHSTTPAS"
     gene            450..>1812
                     /locus_tag="VF788_14755"
     CDS             450..>1812
                     /locus_tag="VF788_14755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+]
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinic semialdehyde
                     dehydrogenase"
                     /protein_id="HEX8935420.1"
                     /translation="MAIKTTNPATGETLRTFEAFSGQEIETRIARAVAAYRSYRKTTF
                     AQRANWMHAAAGILEAKAEDIAALMTLEMGKTLKAANAEVAKCAAGARFYAENAERFL
                     ADEPADPESVSAAKAYTHWQPLGPVLAIMPWNFPLWQVVRFAAPALMAGNVGLLKHAS
                     NVPQTALRLQDVFLEAGFPQDVFQTLLIDAEAVEKILTDTRVAAATLTGSEHAGRSVA
                     QTAGREIKKTVLELGGSDPFIVMPSADLARAATVATIARCQNNGQSCIAAKRFIVHAD
                     ASAEFQRLFIGNMSSLVVGDPTDERTDVGPLATEQGLHDVQELVDDALSKGAQLLCGG
                     QRPDRPGWFYPPTVIIGVTPDMRMYYEEVFGPVAQLYSVPHIEAAIRLANDTPFGLGS
                     NAWTEDPAEQDKFIDELEAGQVFINGMTTSYPQLPFGGVKHSGYGRELSNLGIREFCN
                     AKTV"
BASE COUNT          371 a          589 c          557 g          295 t
ORIGIN      
        1 aagatcactg gtcagaaggc ggcctgggcg aagcggtcct cagcgtgttg gccgcgcacc
       61 cccagcgccc accgatccgc acgctcgctg tcggtggcat gcccgtctct ggcaaacccg
      121 ccgaattgct gcatgccgcc ggcatcgacg ccgaagcaat caccaccgca gcacggcaat
      181 tactcaacca acactccact acacccgcct catgacaccc gcgacgaccg gggccgaagg
      241 ttgaccgcag actcgacccg gcagggcaac gggatcgaaa gttatgcaac cggccagatg
      301 gtttgatgac acacacgatg gggaactggc cgtgatggat caggtcaacc gtgtcgacca
      361 taagggttcg gtccggaggt acccaccaac cacagcgaca tggctgaccg gggcggcacg
      421 cgccgtggaa cggtgaggtg aacgaccgca tggcaatcaa gacgactaac cctgccactg
      481 gtgaaacgct gcgtaccttc gaggctttca gcggccagga gatcgagacg cgaatcgcca
      541 gggccgtggc tgcctaccgc agctaccgga agaccacctt cgcgcagcgc gccaattgga
      601 tgcacgcggc tgcgggcatt ctggaagcca aggctgaaga catcgctgcc ctgatgaccc
      661 tggaaatggg caagacactg aaggccgcca acgcagaagt cgcgaaatgc gcggcgggcg
      721 cgaggttcta cgccgagaac gcggaacgct ttctcgctga cgaaccagct gacccggagt
      781 cggtctccgc agccaaggca tacacgcact ggcagccgct tggcccggtg ctggcgatca
      841 tgccgtggaa cttcccgttg tggcaggtcg tccggttcgc cgcacctgcg ctcatggcag
      901 gcaatgtcgg cctgctgaag cacgcatcca acgtgccgca gaccgcgttg cggctgcagg
      961 acgtgttcct cgaggccggc tttccgcagg acgtcttcca gaccctgctc attgatgccg
     1021 aagccgtcga gaagatactc accgacacga gggtggcggc tgcgacgctg accggcagcg
     1081 agcatgccgg ccggtctgtg gcacagaccg cgggccgtga gatcaaaaag accgtgctgg
     1141 aactcggcgg cagcgacccc tttatcgtca tgccctcagc cgacttggcg cgtgcggcca
     1201 cagtcgccac catcgctcgc tgccagaaca acgggcagag ctgtattgcc gcaaaacgtt
     1261 ttatcgttca tgccgacgcc agcgcggaat tccagcggtt gttcatcggg aacatgtcct
     1321 cgctcgtggt cggagacccc accgacgagc gcacggatgt cggcccgctc gcgaccgaac
     1381 agggtctaca cgatgtccag gaactggtcg atgacgctct cagcaagggt gcccagctgc
     1441 tctgcggtgg gcagcgcccg gatcgccccg gctggttcta cccgcccacg gtgattatcg
     1501 gggtgacacc ggacatgagg atgtactacg aggaggtgtt cggtccagta gcccagctct
     1561 attccgtgcc gcacatcgag gcggcaatcc gtctcgccaa cgacactccc ttcggtcttg
     1621 gctccaacgc atggaccgag gacccggccg aacaagacaa gttcatcgac gagctggaag
     1681 ccggtcaggt gttcatcaac gggatgacca cctcctaccc ccagctcccg tttggtggag
     1741 tgaaacactc agggtacggg cgtgagctgt cgaacctcgg tattcgcgaa ttctgcaacg
     1801 ccaagacggt gt
//
LOCUS       DASVXZ010000698         3558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_168498, whole genome shotgun sequence.
ACCESSION   DASVXZ010000698 DASVXZ010000000
VERSION     DASVXZ010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3558
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168498"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VF788_14760"
     CDS             complement(<1..220)
                     /locus_tag="VF788_14760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935421.1"
                     /translation="MTEVTLRRLLPEPGILTAVEALDGLALGGMAPDHRPYVVLNMVA
                     TADGAASVAQRTAPISSPADRQLFHELRA"
     gene            complement(217..765)
                     /locus_tag="VF788_14765"
     CDS             complement(217..765)
                     /locus_tag="VF788_14765"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HEX8935422.1"
                     /translation="MAWITLAELERAGWAGKLIAVDAHGTFQKLVAGLEYSMFIVTVG
                     AGEQRAGCLVGFGCQTSIDPPRFLICLSHQNHTYRVGTNAQEMAVHFVPRGDEALARL
                     FGGCTGDDVDKFARCAWQPGPGGLPILQDCRNWFVGRVVERFDLGDHGGFLLEPIAAH
                     EEGCGPYLSFHQAMQIEPGHPA"
     gene            863..1705
                     /locus_tag="VF788_14770"
     CDS             863..1705
                     /locus_tag="VF788_14770"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017985095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEX8935423.1"
                     /translation="MERISGGKVRDLYSIDGDVLLVASDRISVFDVVLPTPIPDKGAL
                     LTQLSVWWFHKLRNVTPNHLISATDVPPEFQNRAIRCTPLRMIPVECIARGYLAGLGL
                     REYEKNGTVSGVSLPAGLVSGSRLPEPIFTPTTKFSETGHDEFITFDNVAREVGKDTA
                     QRLRSLTLKLYRAAAEHAQNNGVIVADTKFEFGWDAAEELTLGDEAVTSDSSRFWLAE
                     KWRPGQKQYALDKQFVRDALGPGWNREPPGPTIPPPMVAETRRRYIEAYERITGSAWC
                     HSAP"
     gene            1724..2851
                     /gene="serC"
                     /locus_tag="VF788_14775"
     CDS             1724..2851
                     /gene="serC"
                     /locus_tag="VF788_14775"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEX8935424.1"
                     /translation="MTQTATLIIPADLKPADGRFGCGPSKVRPEQLAALATAGASLMG
                     TSHRQRPVRGLVGQIRAGLRALFSLPEDYEVVLGNGGTTAFWDAAALGLVRQRSLHLS
                     YGEFSAKFATVTTRAPFLADPVVVSAPPGDAPQPVADPKCDVIGWAHNETSTGVMVSV
                     CRPAGSHGALVAIDATSGAGGLPVRTADADVYYFAPQKSFASDGGLWIALLSPAALQR
                     IAEISSSDRWVPEFLSLSIALDNSRKDQTYNTPAVATLLLLADQIEWMLAHGGLEWCV
                     GRTTDSSSRLYSWAEASPYATPFVTDPAKRSLVVGTVDFADSVDAGAVAAVLRANGIV
                     DTEPYRKLGRNQLRIGMFPAVDPDDVSALTRCVDWVVERLA"
     gene            2931..>3558
                     /gene="sepH"
                     /locus_tag="VF788_14780"
     CDS             2931..>3558
                     /gene="sepH"
                     /locus_tag="VF788_14780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein SepH"
                     /protein_id="HEX8935425.1"
                     /translation="MRALRVVGLGADDRTIIVETVASQPGAVREQFILPVDDNLHAAM
                     RGDLPRLGQISIELENQMRPREIQARVRAGASVEQVATAAGVSSERIERFAYPVLLER
                     SRIAQLAQQAHPVRTDGPDVRSLDAVVTETFRQRGHDFGAVSWDAWRAENGKWVAQLR
                     WRTGRSENRAHWTFHPGAHGGTVTALDDHATDLIDPQPAAPLRTVAPAA"
BASE COUNT          612 a         1177 c         1185 g          584 t
ORIGIN      
        1 gtgctcgtag ctcgtggaat agctgccggt ccgcggggct gctgatcggg gcggtccgct
       61 gcgccactga tgccgcgcca tcagcggtag ccaccatgtt gagcaccacg tacgggcggt
      121 gatcgggggc cataccgccc agtgccagcc cgtccagagc ctccacggcg gtgaggattc
      181 ccggctcggg cagtaaccga cgcaacgtga cctcggtcac gccggatgtc ccggttcgat
      241 ctgcatggcc tggtggaagc tcaggtatgg gccgcaccct tcctcgtgag ctgcgatggg
      301 ctcgaggagg aaaccgccgt gatcgccgag atcaaaccgt tccaccaccc ggccgacgaa
      361 ccagttccgg cagtcctgca ggatcggcag cccgccggga cccggctgcc acgcgcaacg
      421 ggcgaattta tccacgtcat cgccggtgca gccgccgaac agtcgcgcca gcgcctcgtc
      481 cccccgtggc acgaaatgca cagccatctc ttgcgcgttt gtccccaccc ggtaggtgtg
      541 gttctggtgg gacaggcaga tcaggaagcg tggtggatcg atgctggtct gacagccgaa
      601 gccgaccagg caaccagctc gctgctcgcc ggcgccaacc gtgacgatga acatcgagta
      661 ttcgagcccc gcgacaagct tctggaacgt gccgtgggcg tccacagcga tcaacttacc
      721 cgcccaaccg gctcgctcaa gctcggccag cgtgatccac gccaagcaga ccaccgccca
      781 aggtcagggg cacctcccag caccggatcc gctgagctcg ggaagcagag ggtcccggga
      841 gagactcggt aagctaaccc gggtggagcg aatatcaggg ggcaaagtac gggacctgta
      901 ttcgatcgac ggcgacgtgt tactggtcgc gtccgatcga atctcagtgt tcgacgtggt
      961 gttgccgaca cccattccag ataagggcgc cctgctcaca caactgtcgg tgtggtggtt
     1021 ccacaaactc aggaatgtga cacctaatca tttgatctcc gctaccgatg ttccgcccga
     1081 attccagaac agggcgatcc gctgcacacc gctgcggatg attccggttg agtgtatcgc
     1141 tcgcggctac ctcgcgggcc tggggttgcg cgaatacgag aagaacggca ccgtgtcggg
     1201 agtgtcccta cctgcggggt tggtgtccgg aagccggtta ccggagccga tcttcacgcc
     1261 gaccaccaag ttctccgaga ccgggcacga tgagttcatc accttcgaca acgttgcccg
     1321 ggaagtcgga aaagacaccg cacagcgcct ccgcagcctg acattgaagc tttaccgggc
     1381 cgccgctgag catgcacaga acaacggcgt catcgtcgcg gacacgaagt tcgagttcgg
     1441 ctgggatgca gccgaggagt tgacgctcgg cgacgaggcc gtcacgtcgg attcatcgcg
     1501 tttctggctc gccgagaaat ggcggccagg tcagaagcaa tacgcattgg acaagcagtt
     1561 cgtccgggac gcgctgggcc cgggatggaa tcgggaacca cccggaccga ccattcctcc
     1621 cccgatggtg gcagagacgc ggcggcgcta catcgaggct tacgagcgca tcacaggatc
     1681 cgcgtggtgc cacagtgctc catagccacc gtagggtttg ggtatgacgc agaccgccac
     1741 gctgatcatc cccgccgacc tgaaacccgc cgacgggcgg ttcggctgcg ggccatcgaa
     1801 ggtccgtccc gagcagttgg ctgcgctggc cactgccggt gcttcgttga tgggcacctc
     1861 gcaccggcag aggccggtac gagggctggt cggccagatc cgagcgggat tgcgcgcgct
     1921 gttctcattg cccgaggact acgaggtggt gctgggtaac ggcggcacca ccgcgttctg
     1981 ggatgcggcc gccctgggcc tggtgcgaca gcgctcgctg cacttgagct acggcgagtt
     2041 ctcggcgaag ttcgccaccg tcaccacccg ggccccgttc ctcgccgatc cggtggtggt
     2101 ctccgccccg ccgggggacg ccccgcagcc ggtcgccgat ccaaagtgtg acgtgatcgg
     2161 ctgggcgcat aacgagactt cgaccggagt gatggtttcg gtgtgccggc cagccgggtc
     2221 gcacggcgcg ctggtagcga tcgatgccac cagcggtgct ggtggtctgc cagttcgcac
     2281 cgccgatgcc gatgtctact actttgcgcc gcagaagtcc ttcgcctccg acggcggact
     2341 gtggatcgcg ctgctcagcc cggctgcgct gcagcggata gcggaaatca gctcgtcgga
     2401 ccggtgggtg ccggaattct tgtcactgag catcgcactg gacaacagcc gcaaagacca
     2461 gacctacaac accccagcgg tcgcgacgct gctgctcctg gccgaccaga tcgagtggat
     2521 gctggcccac ggcggcctgg agtggtgcgt cgggcgcacc accgactcgt cctcgcggct
     2581 gtactcctgg gccgaggcct ctccgtacgc gacgccgttc gtcaccgacc cggccaagcg
     2641 ctcgctggtg gtgggcacgg tggatttcgc tgacagcgtc gatgccggtg ccgttgccgc
     2701 tgtgctgcgc gccaacggca tcgtggacac cgagccttac cgtaaactcg gtcgcaatca
     2761 gctgcggatc gggatgttcc cggccgtcga tccggacgat gtctccgcgc tcaccaggtg
     2821 cgtcgactgg gtggtcgagc ggctagcgta aagctgcggg gcggcgcgcc tcccccggcg
     2881 tggcaacccg cccgcttacg gtagcgggca ccagatgtgg aggtcctcgg atgcgcgcgc
     2941 tgcgggtagt cggtctgggg gccgacgacc gcacgatcat cgttgagacg gtggcgtcgc
     3001 agcccggcgc cgtgcgggag cagttcatcc ttccggtaga cgacaacctg catgcagcga
     3061 tgcggggcga tctcccgcgc ctcggccaga tctcgatcga gctggagaac cagatgcgac
     3121 cccgagagat ccaggcccgg gtcagagccg gagcgtccgt cgagcaggtg gccaccgccg
     3181 cgggagtatc gagcgagcgg atcgagcgct tcgcctaccc cgtgctgctg gaacgttcgc
     3241 ggatcgcgca gctggcccag caggcccacc cggtgcgcac cgacggtcct gatgtgcgca
     3301 gtctggatgc ggtcgtcacc gagacgttcc gccagcgggg tcacgatttc ggagcggtga
     3361 gctgggacgc ctggcgcgcc gaaaacggca agtgggtggc gcagctgcgc tggcggaccg
     3421 gccggtcgga gaaccgagcg cactggacgt tccaccccgg cgcccacggg ggcaccgtca
     3481 ccgcactcga cgaccacgcg accgatctga tcgatccgca accagccgcg ccactacgca
     3541 ccgtggcacc ggcagccg
//
LOCUS       DASVXZ010000699         2072 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_705256, whole genome shotgun sequence.
ACCESSION   DASVXZ010000699 DASVXZ010000000
VERSION     DASVXZ010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_705256"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..443)
                     /locus_tag="VF788_14785"
     CDS             complement(153..443)
                     /locus_tag="VF788_14785"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935426.1"
                     /translation="MSKNRRSFTPEYKDEAAKMVVELSRPVASIARELGLNEQTLRNW
                     VHSYRQRHADEEPPLAISERARLRELEKEVRDLRLEKEFLGKAAAFFVREYR"
     gene            complement(507..1838)
                     /locus_tag="VF788_14790"
     CDS             complement(507..1838)
                     /locus_tag="VF788_14790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935427.1"
                     /translation="MDRIFLQAYVPKLQSVGLVCQFLYWQRGYEIPSSAAFGKIGDAY
                     VAEVHRWAQAHGVPVRRFAQGENKEAIARPLIEAAEREGGEGKVVLIGIAQEKTPVWR
                     SWKAQGQEQARHPHLEWGPQMAFVHHCYFYLWDPEWGGAFGKTNAYAPWPVGSWRGAP
                     AGAQRQGDRAGIGYTALDNGFRDCADPQGLQRICDRLGPGAVQSFFWRWQRRLPCPLT
                     RQDLRAGYGYELAFRQFEVSDTRVFDRPVAGRAFFEQLIRDHLDLGRPGSVSLIFHRR
                     ITSRTPGTFRTTVITKGVDPQLNCYDKSSRITQYVKEHRAVRTETVVGDTRDFGIGRR
                     VTAENWTARRAVGESANQRLCDAQAADARPAPDVATFAEVTRPSTTKWPARPRTAVRG
                     VLAVLAALVGFTHLLAGFDNPTLVRLVSTLLDGPYTSRHATYDLRRLQRKD"
BASE COUNT          330 a          716 c          680 g          346 t
ORIGIN      
        1 ccgcgtcgtg gccgagtcgg gccggtcgcg ccactcgtaa tagcccgagg tcgagaccgc
       61 cagccaggcg cacatctgca cgatcgtgta cttcttctca ccggtctcgg tcacggtggc
      121 cgtctccacg tcgatgaact cgtacttcgc gctcaccggt actccctcac gaagaaggct
      181 gcggcttttc ccagaaactc cttctccaga cgaaggtcac ggacttcttt ctcgagttca
      241 cggagccgag cacgctcgga gatggccagc ggtggttcct cgtccgcgtg ccgctgccga
      301 taggaatgta cccagttgcg aagggtttgc tcattgagcc cgagctcgcg ggcgatggag
      361 gcgaccgggc gggacagctc gaccaccatt ttcgcggctt cgtccttgta ttccggtgtg
      421 aatgaccggc gattcttcga cacgtgagtc ctctcttccg gatgcgtcat cctagtgggt
      481 gcgctatccg gaagatccgt ggccccttag tctttgcgtt ggagtcgccg caggtcgtaa
      541 gtggcgtgcc ggctggtgta ggggccgtcg agcagggtgc tgaccagtcg gacgagggtg
      601 gggttgtcga agccggcgag caggtgggtg aacccgacga gggcggcgag caccgccagc
      661 acgccccgaa ccgcagtccg ggggcgtgct ggccatttgg tggtggatgg ccgggtcacc
      721 tcggcgaagg tggccacatc cggcgcgggt cgggcatcgg cggcttgggc gtcgcacaga
      781 cgctggttgg cggactcgcc caccgcccgc cgggctgtcc agttctcggc ggtgacccgc
      841 cggccgatgc cgaagtcccg ggtatcgccg accaccgtct cggtgcgcac cgcccggtgc
      901 tccttgacat actgggtgat ccggctggac ttgtcgtagc agttgagctg cgggtcgacc
      961 cccttggtga tcactgtggt gcggaacgtc cccggtgtgc ggctggtgat ccgccggtgg
     1021 aagatcagcg ataccgagcc cggtcgcccc aggtccagat ggtcgcggat gagttgctcg
     1081 aagaaggcgc gcccggccac cgggcggtcg aacacccgcg tatcggagac ctcgaactgg
     1141 cgaaacgcga gctcataccc atagccggcg cgcagatcct gccgggtcag cgggcagggc
     1201 agccggcgct gccagcgcca gaagaagctc tgcaccgcac ccggccccag ccggtcgcag
     1261 atccgctgca gaccctgcgg gtcagcgcag tcgcggaagc cgttgtccag cgcggtgtag
     1321 ccgatcccgg cccggtcgcc ctggcgctgc gccccggcgg gggcgccccg ccagctcccc
     1381 accggccagg gcgcgtaggc gttggtcttc ccaaacgccc caccccactc gggatcccac
     1441 aggtagaagt agcagtggtg gacaaacgcc atctgcgggc cccactccag gtgcggatgc
     1501 cgcgcctgct cctgcccctg ggccttccag gaccgccaca ccggggtctt ctcctgagcg
     1561 atgccgatca gcaccacctt cccctcgccg ccctcccgtt cggcggcctc gatcaggggg
     1621 cgggcaatcg cctccttgtt ctcgccctgg gcgaaccgcc gtaccgggac tccgtgggcc
     1681 tgggcccacc ggtgaacctc cgccacgtag gcatcgccga tcttcccgaa cgccgccgag
     1741 gagggaatct catagccgcg ctgccagtac aagaactggc agaccaagcc caccgactgc
     1801 agcttcggca catacgcctg caagaagatc cggtccaccg aacggcaggt gagcctgacg
     1861 tggtcccgca atagggtcgc atcgtcggcc aggacgcctc ctcggtctca gcaacccaga
     1921 ggctacgacc gaacccgagg gggatctccg gcacggagat ccccctcagc gcatcacacc
     1981 gcgtctcctg cggagccccc cccgcgaaac actgctcttt ggtatgaggc agctcgctac
     2041 gtatagccgg atcacaggag cgacggagga ta
//
LOCUS       DASVXZ010000700         6749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_78466, whole genome shotgun sequence.
ACCESSION   DASVXZ010000700 DASVXZ010000000
VERSION     DASVXZ010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6749
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78466"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VF788_14795"
     CDS             <1..454
                     /locus_tag="VF788_14795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935428.1"
                     /translation="VYQDARTPALSKCCGYEFDLGWRYVMEPTIDAAAAALATAAAPP
                     ITASGEETLTLVRDLARIAQHLGELTAAARGRLAAWGTVTPHLLRAETLAVDVTRCLS
                     HAAGTYAFNTTQSGTVHRPVNPERIARLADYRRTNSAHSATLLEASHL"
     gene            807..1700
                     /locus_tag="VF788_14800"
     CDS             807..1700
                     /locus_tag="VF788_14800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010223941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mycobacterial-type methylenetetrahydrofolate
                     reductase"
                     /protein_id="HEX8935429.1"
                     /translation="MTLNTIALEFVPSNVEHGTQRAVDEAHKVLELSKKFGIDGRIGH
                     VMIPGMIEEEDDRPVEMKPKLDVLEFWSAITPELPGVAGLCTQVTAFMDESTLGERLT
                     NLRAAGIEGIIFVGVPRTMNDGEGSGVAPTDALSLYDQLVPHRGVIVIPTRDSEQGRF
                     NFKCNRGATFGMTQLLYSDAIVGFLKDFAQATEHRPEMLLSFGFVPKFENRIGLINWL
                     IQDPGNQVVAQEQTVVRKLADSEPNLKRKLMLDLYKQVIDGVADLGYPLSIHLEAPYG
                     VSAPAFETFAEMLAYWAPDKS"
     gene            1717..2295
                     /locus_tag="VF788_14805"
     CDS             1717..2295
                     /locus_tag="VF788_14805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935430.1"
                     /translation="MLRDLAWSTLLREVTTQGAAFVARAFLQPFRDELAAELAAGPYE
                     PVEPVIGQVRQEAESFQVPIGDMEGYPVLSGLCDRLVRQVHTHGVPEWVPNEVAVQRY
                     QPGSIGITPHRDQRRFALLVAVITVAGSAPFTLCRNRSGDPIRTWQADEGSLVLLRGP
                     GLADEQDGRLMHHVGGPTGASRTSIGIRMDTA"
     gene            2497..2676
                     /locus_tag="VF788_14810"
     CDS             2497..2676
                     /locus_tag="VF788_14810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935431.1"
                     /translation="MLAIVAAVLFAIALILDLTVGAIGPLGVTTFIAAGLLCLALQLA
                     GVGAGSTRGWRRSRV"
     gene            2860..3036
                     /locus_tag="VF788_14815"
     CDS             2860..3036
                     /locus_tag="VF788_14815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935432.1"
                     /translation="MAHEVNCPHCGCPLLAIQDAVRVPELDTVEILQQEIDLLRATIA
                     RLRGAGFNPLPRVR"
     gene            3139..4641
                     /locus_tag="VF788_14820"
     CDS             3139..4641
                     /locus_tag="VF788_14820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935433.1"
                     /translation="MLVDFRPTGRLRGNKPVDAMASLGPVLDALAEDSVDLSRVRVVC
                     DWVQYRNNFRDVVDIRPILAAHDHESDLMPVALAAVMTEDEMEVAIDVRRSADVPLKQ
                     LTGELIQARRTGTDLSRIYLEPWMATSKSMIWEFNSLYWKALNLWEQVTGQQYEKTLP
                     GGESDARNRDAVREIIASLFTLWDSLAERNTLPDELYVVELGPGNGIQAKTWLDEFVA
                     LDRARGKEYYRRLHYLMCDYSPHVLELARTSVADHAEHVSSFVLDATQPRTALGFLGY
                     KVFLIYISNVYDNLPSDEVAQIGGRTYTVQSRAYLPADASSAIAQSVAAMPDQVPELI
                     GKLLRLQPTLLAEALPAHFPSVEAAVEFWRRSWAELRLEERYVPLVGLDLYQIAPMVS
                     GENLRPLLESGAAIRMHVNNGAVASFVDTVPLLHPYGRLICHDLFVTDVHSYRTGFRG
                     PGKYDGSVVNWLNGPLLAHIGRRKGFDVDFQRFAHRTDSNIVTMTAQVRD"
     gene            4660..5724
                     /locus_tag="VF788_14825"
     CDS             4660..5724
                     /locus_tag="VF788_14825"
                     /inference="COORDINATES: protein motif:HMM:NF013847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935434.1"
                     /translation="MLPVLPTTVVGSYSVPEWLERLKTDYYRNRISRSHLSEIHDMAI
                     KAALKDQETAGIDIVTDGELRRDNDIDYLLARIPGVHIPVTVKSFYYDYYDSPIVTEP
                     LPVDPPPLGLAEDYRFTRQHTDHAVKFSFTGPFSLSHRVQNRAYAKSADLIRALAQTL
                     NAEARSLAKEGADQLQIDEPFLAGYPEDVGIAVEAINIVTHGVDVTWGLHVCYGNRYS
                     RPSWEGHYDFLFPAVLDANVDQLILEFARKGYEDLHVIQRLGWDRALGLGVVDVKTEQ
                     IESADLIARRIRKALDTFPAEKLIINPDCGLRHLPADVARAKLVAMVKGTVAVRRSLP
                     TESGSTQSESVPEPTVAQGA"
     gene            5729..>6749
                     /gene="metK"
                     /locus_tag="VF788_14830"
     CDS             5729..>6749
                     /gene="metK"
                     /locus_tag="VF788_14830"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEX8935435.1"
                     /translation="MAQLESVEFLFTSESVTEGHPDKIADQISDAVLDAALTMDPNSR
                     VACETLITTGMVVLAGEITTPGMLDYTQIVRDTICRIGYDNGSFGFDGHSCAILIALD
                     KQSPDIAQGVDVAQERRGQLSEDELDSAGAGDQGMMFGYATNETPELMPMPIALAHRL
                     SKRLATVRKDGTLPYLRPDGKTQVTVRYRDGVPIGVEKVLISTQHAEDVTLEQIRADL
                     WKHVVLAELPLDFYNEAQLADNLFVNPTGRFVIGGPVGDAGLTGRKIIVDTYGGFARH
                     GGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRVEVQVAYAIGVARPLSVLVETF
                     GTEHVP"
BASE COUNT         1223 a         2144 c         2178 g         1204 t
ORIGIN      
        1 ggtgtatcag gacgcccgaa caccagctct atccaagtgc tgtggttatg aattcgacct
       61 tggatggcga tatgtcatgg agcctacgat cgacgcggca gcggcggcgc tggccacggc
      121 ggctgctccg ccgataacgg ccagcggcga ggagaccctg actctggtcc gggatctggc
      181 gcggatcgcc caacacctcg gcgagctcac cgcggccgcc cgaggccgct tggcggcatg
      241 gggcaccgtc acaccacacc tgctgcgtgc cgagaccctt gcggtcgatg tcacccgatg
      301 cctcagccac gcggctggca cctacgcctt caacaccacg cagtccggca ccgtgcaccg
      361 cccggtcaac cccgagcgca tcgcccgatt ggcggactat cgacgtacga attccgcaca
      421 ttcggccact ctgctggagg cgagccacct atgacttgct tattgccgcc ggtgagctac
      481 ccgaccccgg agggatgagc cgattctcgg ccgcggtggc tgccccgagc agctggggga
      541 cgtcgcctgg tctggccagt gcggcaggtt aatcgcttga cctcgacggc agggcagaca
      601 gatctgtatc gtgaggctcc cggcagagcg cgacctgtgg ccagattcaa cccgtcgcgg
      661 cgaaggggga cacaggtgtc cgatctgcaa tcgtccgccg cgataacggc agtcgccgcc
      721 ggcacgagca ttcctgtgac atggagccgg agactgtgcc cgttgaccaa gcggaacacc
      781 caggtggata cgacaggagc agcctcgtga ccctcaacac cattgcgctc gagttcgtcc
      841 cgtcgaatgt ggagcacggc acgcagcgcg ccgttgacga ggcgcacaag gtgcttgagc
      901 tctccaagaa gttcggtatt gacggccgga tcgggcacgt gatgatcccg gggatgatcg
      961 aagaagagga cgacaggccc gtcgagatga agcccaagct ggatgtgctt gagttctggt
     1021 cggccatcac gccggagctg cccggagtgg ctggactgtg cacacaggtt accgcgttca
     1081 tggatgagtc gaccctcggc gagcggctga caaatctgcg ggccgccggg atcgaaggca
     1141 tcatcttcgt gggcgtcccc cgcacgatga acgacggtga ggggtcgggc gtcgcaccga
     1201 ccgacgcgct gtcgctctat gaccagctgg tgccccaccg cggcgtgatc gtcatcccga
     1261 cccgggacag cgagcaaggt cgcttcaact tcaaatgcaa ccggggcgcc accttcggta
     1321 tgacccagct gctgtactcc gatgcgatcg tgggattcct gaaggacttc gctcaggcga
     1381 cggagcaccg gccggaaatg cttctctcgt tcggattcgt cccaaaattc gagaaccgga
     1441 taggtctgat caactggctg atccaggacc cgggcaatca ggttgtcgcg caggagcaaa
     1501 ccgttgtgcg gaagctcgcc gacagcgagc ccaacctgaa acgcaaactc atgctggacc
     1561 tctacaagca ggtgatcgac ggtgtcgctg accttggcta cccgctgagc atccatcttg
     1621 aggccccgta tggcgtctcg gcgcccgcgt tcgagacctt cgccgagatg ctggcttact
     1681 gggctcccga caagagctga ccacaatccc gggagcatgt tacgcgatct ggcctggtcc
     1741 accctgctgc gcgaggttac gacgcaggga gcggcattcg tagctcgggc cttcctccag
     1801 ccgtttcgtg acgagctcgc ggccgagctg gcagctgggc cgtacgagcc ggtggagccc
     1861 gtgatcgggc aagtccgtca ggaggccgag tcattccagg tccccatcgg tgacatggag
     1921 gggtaccccg tgctgagcgg cctgtgcgac cggctcgtcc ggcaggtcca cacccatggc
     1981 gtgccagagt gggtgccaaa cgaggtcgcg gtccagcgct accagccagg gtcgatcggt
     2041 atcactccgc accgcgacca gcgccggttc gcccttctcg tggcggtgat cacagtcgcc
     2101 gggtcagcac cgttcacgct gtgccgcaac cggtccggcg accccatccg gacctggcag
     2161 gccgacgaag gcagcctggt gctgttgcgg ggaccggggc tggccgacga gcaggacggg
     2221 cggctgatgc accacgtcgg cggccccacc ggcgcctccc ggacctcgat cggaatccgg
     2281 atggacaccg cttagcccat agcccacgga tcactcggtc agctcaggcg cccggtacgg
     2341 gcgggtagtg actcgtcgtg cgaacagtcc agttcggtgc gaacatcgac cggtgggcgc
     2401 gtcttatacc cctgcggtgc tggtatgacg ctccctggca atcccagcgg agtgcctgtt
     2461 ctgcgccaga cggcctagcc gactaaggag accaccatgc tcgccatcgt cgccgctgtc
     2521 ctgttcgcca tcgccctgat cctcgatctg accgtaggtg cgatcggccc gctcggcgtc
     2581 acgaccttca ttgcggccgg gctgctgtgt ctcgcgctgc agcttgcagg ggtcggcgct
     2641 ggctccacga ggggctggag acgcagccgc gtctgaaaaa aatgaccctg tgttgtcacc
     2701 ggtcatgggc cctcgggtat gaggatgttt gtggtctaac cacaaatgtg tggccggcga
     2761 gttcgtgccc ggacccggtt gtccacaccc agcgctcccc tttcactagt ggtgtggccc
     2821 gtctcacagg cgaggcggtc gcggcgtcag gagggtgaga tggcgcacga ggtcaactgc
     2881 ccacattgtg gatgcccgtt gctcgcgatc caggacgccg tccgggtgcc ggagctggac
     2941 accgtcgaga tcctccagca ggagatcgac ctgctccgcg cgacgatcgc ccggctgcgc
     3001 ggggcgggat tcaacccgct ccctcgggtt cggtgatgcc tgctgatcgg gtcggtcggt
     3061 gtccggcgag caaggccctc cacgagcagg ccccggttcg cccgcgaccg gaccgcacag
     3121 cgatggaggg cagcggccgt gctggttgat tttcgtccca cgggccggct tcgcggcaac
     3181 aaaccggtag acgcgatggc atcgttgggt cccgtgctgg atgcgcttgc cgaggactcg
     3241 gtggacctgt cccgggtacg tgtggtgtgt gactgggtgc agtaccgcaa caatttccgc
     3301 gacgtcgtcg atatccggcc gatcctggcg gcgcatgatc acgaatccga cttgatgccg
     3361 gtggcgttgg ccgcggtgat gaccgaggat gagatggagg tcgccatcga cgtccgccgc
     3421 agcgccgacg tcccgttgaa acagctcact ggcgaactga tccaggctcg ccgcaccggc
     3481 accgacctct cccggatcta cctcgaaccg tggatggcga ccagtaagag catgatctgg
     3541 gagttcaact cgctgtactg gaaggccctg aacttgtggg agcaggttac tgggcagcag
     3601 tacgagaaaa ccctccccgg cggggagagc gacgcgcgga accgggatgc ggtgcgagag
     3661 atcatcgcca gtctgttcac gttgtgggat tctctggctg agcgcaatac gttgcccgat
     3721 gagctgtacg tggtagagct cggcccgggt aacggaattc aggcgaagac ctggctggac
     3781 gagttcgtcg cgcttgaccg ggcacgcggc aaggagtact accggcggct gcactatctg
     3841 atgtgtgact attcacccca tgtcctggaa cttgccagga cctcggtcgc cgaccacgca
     3901 gagcatgtca gctcgttcgt cctggacgcc acccagccac ggaccgcgct tggcttcctg
     3961 ggctataagg tcttcctgat ctacatctcc aatgtctacg ataatctgcc cagcgacgag
     4021 gtcgcccaaa tcggtggtcg cacctatacc gtccaaagca gggcatacct gcccgccgac
     4081 gcatcttctg cgatcgcgca gtcggtagca gcgatgccgg atcaagtacc ggaattgatc
     4141 ggcaagctgc tgcgactgca gccgacctta ctcgctgagg cgttgccggc acatttcccg
     4201 tcagtggagg cagcggtcga gttctggcgc cgtagctggg cggagctgcg cttggaggag
     4261 cgctacgtgc cgctggtagg gttggatctc taccagatcg cgcctatggt gagtggggaa
     4321 aatctgcggc ccttgctgga atccggcgcc gctatccgaa tgcacgtgaa caacggtgcg
     4381 gtagccagct tcgtggacac cgtcccgctg ctccacccct acggtcggct gatctgccat
     4441 gacctgttcg ttaccgatgt acattcctat cgcaccggct tccgcggccc cggcaagtac
     4501 gatgggtccg tggtgaactg gctcaacggg ccgctgctgg cacatatcgg tcgccggaag
     4561 ggtttcgatg tagatttcca gcggttcgcg catcggaccg acagcaacat cgtcaccatg
     4621 actgcccaag tgagagactg acgcagtaaa gggactgaca tgttgcctgt gctacccacc
     4681 acagtcgtgg ggtcgtactc ggttccggag tggcttgagc ggctcaaaac cgattactac
     4741 cggaaccgga tcagtcgcag ccacctcagc gaaatccacg acatggcgat caaggcggcg
     4801 ctcaaggacc aggagaccgc gggaatcgac atcgtgaccg acggggagtt gcggcgcgac
     4861 aacgacatcg actacctgct ggcccggata ccgggagtgc acatcccggt gaccgtcaaa
     4921 tcattctatt acgactacta cgattctccg attgtcaccg agccattgcc ggtcgatcca
     4981 ccaccgctgg gtctggctga ggattaccgc ttcacccgcc agcacaccga ccatgcggtc
     5041 aaattcagct tcacgggacc tttctcgctg tctcaccggg tccagaacag agcctatgcc
     5101 aagtccgccg acctgatccg agccctggcg cagacgctca acgctgaggc ccggtcgctg
     5161 gctaaagagg gtgcagatca gctgcaaatt gatgagccgt tcctggctgg ctaccccgag
     5221 gacgtcggca tagccgtcga ggcgatcaac atcgtgaccc acggcgtcga cgtcacctgg
     5281 gggttgcacg tctgctacgg caaccgctac tcccggccgt cctgggaagg gcattacgac
     5341 ttcctgtttc ccgccgtgct cgacgcgaac gtggaccagt tgatcctcga gttcgcccgc
     5401 aaaggctacg aggacctgca cgtgatccag cggctcggtt gggaccgtgc gctcgggtta
     5461 ggcgtggtgg acgtcaagac cgaacagatc gaatctgccg atctcatcgc caggcgcatc
     5521 cgaaaggccc tggacacctt ccccgccgaa aagttgatta ttaatccaga ttgtggccta
     5581 cgtcacctgc ccgctgatgt cgcgagggca aagctggtag cgatggtaaa agggactgtc
     5641 gcggtccgcc gcagcctgcc aaccgagtcg gggtccaccc aatcggagtc cgttccggaa
     5701 ccgactgtag cgcaaggagc gtgatcgcat ggcccagctg gagtccgttg agtttctctt
     5761 cacctcagag tcggtgaccg agggtcatcc ggacaagatc gccgatcaga tctccgacgc
     5821 cgtgctggac gccgcgttga cgatggaccc gaactcgcgg gtagcctgcg agactttgat
     5881 caccaccggg atggtcgtgc tggcgggcga gataaccaca cccggcatgc tggactacac
     5941 gcagatcgtc cgggacacga tctgccgcat cggctacgac aacggaagct tcggcttcga
     6001 cgggcacagc tgcgcgatcc tgatcgcgct cgacaagcag tcgcccgaca tcgcccaggg
     6061 tgtcgatgtg gcccaggagc ggcgcgggca gctctccgaa gacgaactgg atagcgccgg
     6121 tgcgggtgac caggggatga tgttcgggta cgccacgaac gagactcccg aactgatgcc
     6181 gatgccgatc gcgctggcgc accggctgtc caagcggctg gcgacagtcc gcaaggacgg
     6241 cacactgccc tacctgcgcc cggacggcaa aacgcaggtg accgtccgat accgggatgg
     6301 tgtcccgatc ggggtggaga aggtgctgat ctccacccag cacgctgagg acgtcacgtt
     6361 ggagcagatc cgcgcggacc tgtggaagca cgtggtactc gcggagctgc ccctcgactt
     6421 ctacaacgaa gcccagctgg cggacaacct gttcgtcaac ccgactggca ggttcgtgat
     6481 cggtggtccg gtcggcgatg ccgggctgac tgggcggaag atcattgtgg acacttacgg
     6541 ggggttcgcc cggcacggcg gcggcgcgtt ctccggtaag gatccatcca aggtggaccg
     6601 ctccgcggcg tacgccgccc ggtacgtggc caagaacatc gtggccgccg gcctggcgga
     6661 tcgggtcgag gtgcaggtgg cgtacgcgat cggtgtcgcc cggccgctgt cagtgctggt
     6721 ggagaccttc ggcaccgagc acgtgcccc
//
LOCUS       DASVXZ010000701         8108 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1473593, whole genome shotgun sequence.
ACCESSION   DASVXZ010000701 DASVXZ010000000
VERSION     DASVXZ010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8108
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1473593"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..340
                     /locus_tag="VF788_14835"
     CDS             <1..340
                     /locus_tag="VF788_14835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935436.1"
                     /translation="TLESHSAEFTGVIGFAIHGFNGQNIVPILGILLLLVSFFAKVPR
                     GIMWAGLVLLLVLAQVFLGIFGHGIPELGVLHGLNALVLFSVAVIAARRARVPAELSV
                     AAPFGAAHVS"
     gene            344..1816
                     /locus_tag="VF788_14840"
     CDS             344..1816
                     /locus_tag="VF788_14840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HEX8935437.1"
                     /translation="MADIKRGDIRMAGRRRRVLAILAAIAVLGPLGWLWQASLLPGTY
                     SMMDMGYADHGGGPHHQMSTPGRSVTSLTDTTPGAPDVALTLVARKEKVRLASGREID
                     GYTLNGSSPRPVIRASQGQLIEVRLVNESVPGGVTLHWHGVNVPNAEDGVAGATQDAV
                     RPGGEFTYRFRVTQIGTFWYHSHQVSHEQVQRGLFGALVINRPGDASLDVPALVHVYD
                     GQRTINGRSGGVPVTAAPGSQIRVRVINTDNGPMPVWVAGTTYRLLAVDGTDLHEPAP
                     IKGTAVEVTAGGRADLEIVMPADGTGVRVEMGGPTSLQLGAAPPHAAQPAHVLDLLSY
                     GSPAPLGFDPAAATRRFGYSIGRRPGFVNGWPGFWWTINGHMFPDVPMYMVAEGDVVT
                     MHISNSSGELHPMHLHGHHAVVLSRNGIRATGSPWWVDSLNVGDGESYDIAFVANNPG
                     LWMDHCHNLTHAAEGLVAHLMYQGVTEPYTVGGASANEPE"
     gene            complement(1817..2242)
                     /locus_tag="VF788_14845"
     CDS             complement(1817..2242)
                     /locus_tag="VF788_14845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006236807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaB family protein"
                     /protein_id="HEX8935438.1"
                     /translation="MPAKEELPSTLQRSPEKAQRTWSKAHDSAVGTYGEGERSHRTAY
                     AALKHTHQKVGDHWEPKNGKGSSDERAEGGVDPETGQPPSGKTAGGVNANASKQELLD
                     QAKRLRVRGRSSMNKGELVDALRKASERETRKARERENG"
     gene            complement(2317..3477)
                     /locus_tag="VF788_14850"
     CDS             complement(2317..3477)
                     /locus_tag="VF788_14850"
                     /inference="COORDINATES: protein motif:HMM:NF044385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8935439.1"
                     /translation="MRILFTSCPAYGHVNPMLPLAHQARLAGHDVAFATGAELAPELE
                     RRGFETWLVGPSRAETDASVGVTIPNLTELHSEARMRAQIEGVFVDSAAKRAVELVPQ
                     AQQWRPDIIVHEFTELAGALAAAYTGARHVVHGLGPMPSAHMWEAWFAPGFAKLCEQW
                     QAPGLAEEIRVATYLDISPPGLRYDGEPTWQRITPLRPVAGEPAKGERLPEALAALPH
                     PQTIHLTLGTIFNEAPGVLETAIAGLSELPLNLVVTTGPDTDPTRFGPQSRHVLFEPY
                     IPHTLLLPRCSLVVSHGGAGIMLGALAHGLPQLILPQGADQFMNAAACQNARVALTLT
                     PDEFSAHAVAAAARRLITEPEFNAAASRIRAEINAMPTAADVLAVMCTVGAW"
     gene            complement(3640..3870)
                     /locus_tag="VF788_14855"
     CDS             complement(3640..3870)
                     /locus_tag="VF788_14855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEX8935440.1"
                     /translation="MPDLVGSNLQGAQDAVQRLTGFAIAVTRSHDATGAGRRQVLDRN
                     WKVCSQNVPVGATIGAGTRIDFGAVKLDERCP"
     gene            complement(4242..4673)
                     /locus_tag="VF788_14860"
     CDS             complement(4242..4673)
                     /locus_tag="VF788_14860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015102829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEX8935441.1"
                     /translation="MLMRTDPFRELDRLTHALFGTNGTRSHPAIMPMDAYRQDGQFVV
                     HFDLPGVDPSTIDINVERNVLTVKAERKPAYGEDIELQANERSRGTFSRQLFLGDTLD
                     TDRVEASYDAGVLTLHIPVAEKAKSRKIELTAPGTAKEINV"
     gene            5011..5286
                     /locus_tag="VF788_14865"
     CDS             5011..5286
                     /locus_tag="VF788_14865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009151832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX8935442.1"
                     /translation="MAADLLGVQPAFLRSLDAAGLLAPNRSVGGQRRYSRAELTLALR
                     VRELLDGNMPLIAAVRIVSLERQLEAAQQRIAHLESAISSNPSKPQH"
     gene            complement(5413..6558)
                     /locus_tag="VF788_14870"
     CDS             complement(5413..6558)
                     /locus_tag="VF788_14870"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8935443.1"
                     /translation="MLGIIIGVAAVILLVAIGNGVQASVNEKVQPLANLITIVPSTGN
                     VPGGSPPKDLIDGDVTALQRQVPDAAVVLPATTGDALAETESSQFRSKVIGSTDRWLE
                     VNNRDLQVGTFFDDAQVRSTARVVVLGPTVATTLFGTAQDSLGQMLRLNRQSFKVIGV
                     MQTVGEPGDDNVVMPLSSVRRYVFGGGDKLNQITVQVNQANAVPAAENDVIRTLSDRH
                     RIKDAGKRDFDVQSLRSRLETFQQILSILTLFTASVAAISLVVGGIGVLNIMLVSVTE
                     RTREIGIRKAIGATRRAILQQFLIESVVLAGVGGVIGILIGVGLSVLGAEVAPALGST
                     LDTFAPRVTLPSVLLSFGISLVIGLVAGGYPANRAARLRPVEALRYE"
     gene            6962..7825
                     /locus_tag="VF788_14875"
     CDS             6962..7825
                     /locus_tag="VF788_14875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEX8935444.1"
                     /translation="MTHRMVKGPRRTVRTTAMGFAAAAAVVLVAVELPSTASAAAPSW
                     APAGQAAIHPGVMTSTEGGDCTSNFIYYNATDVFIGQAAHCAGTGAPTETSGCTAGTK
                     PLGTKVTIKGASKPGILAYSSWITMAQRHEQDNNTCDHNDLALVKIDPADRDKINPSV
                     PFFGGPIGISTAPIASGDRIYTYGNSPLRAGVTALSPKAGFSLGDDAGGWTHTCYTVT
                     PGIPGDSGSAVLTKDGKALGVLASLALAPVAGSNGVGDMSRELDYLNAHGGLGTVSLA
                     PGTEPFHPVIP"
     gene            7859..>8108
                     /locus_tag="VF788_14880"
     CDS             7859..>8108
                     /locus_tag="VF788_14880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX8935445.1"
                     /translation="MQLGMVGLGRMGANIVRRLLRGGHECVVYDVNAAAVQELVGEGA
                     TGAHTLAEFAAALNTPRAAWIMVPTALAGQVVEQLAEHF"
BASE COUNT         1394 a         2681 c         2664 g         1369 t
ORIGIN      
        1 cacgctggaa agccactcgg cggagttcac cggggtcatc ggcttcgcga tccacgggtt
       61 caacgggcag aacatcgtcc ccatcctggg catcctcctg ctcctggtct cctttttcgc
      121 caaggtcccg aggggcatca tgtgggccgg gctggtgctt ctgctcgtcc tcgcccaggt
      181 attcctggga atcttcggcc acggcattcc agagctcggt gtgctgcacg gtctcaacgc
      241 tctggtgctg ttttcggtcg cggtgatcgc agcccgtcgg gcgagggtgc cagccgaact
      301 cagcgtcgct gcgccgttcg gagcggcgca cgtcagctag cccgtggcgg atatcaagcg
      361 tggcgacatc aggatggcag gtcgccggcg aagggtgctg gcgatcctgg ccgccatcgc
      421 ggtgctcggg ccgctcgggt ggctgtggca ggcgagcctg ctgccaggca cctactcgat
      481 gatggacatg gggtacgccg accatggcgg cggtccgcac caccagatgt ccacgccggg
      541 tcgcagcgtc acatcgttga ccgacaccac gcctggagct cccgacgtcg cgctcacgct
      601 cgtcgcacgc aaggagaagg tgcggctcgc ctctggccgg gaaatcgacg gctacaccct
      661 gaacgggagc tcaccaaggc cggtcatccg cgccagccag ggccagctca tcgaggtccg
      721 gctggtgaac gagtcggttc ccggaggcgt cacgctgcac tggcacggcg tcaacgtgcc
      781 caacgccgag gacggtgtcg ccggtgcgac ccaggacgcg gtacgacccg gcggcgagtt
      841 cacctaccgg ttccgggtca cgcagatcgg gacgttctgg taccactctc accaggtgtc
      901 ccacgagcag gttcagcgag gcctgttcgg cgccctggtg atcaaccggc ccggcgacgc
      961 gagcctggac gttcccgcgc ttgtgcacgt ctacgacggg caacgcacca tcaatgggcg
     1021 ctctggcggc gtgccggtca ccgcggcacc tggcagccag atccgagtgc gggtgatcaa
     1081 tactgacaac ggcccgatgc cggtgtgggt ggccgggaca acgtatcggc tcctcgcggt
     1141 cgacggaacc gacctgcacg agccagcccc gatcaagggg acagccgtcg aggtgaccgc
     1201 cggaggccgg gccgacctgg agatcgtcat gcccgctgac gggaccggcg ttcgcgtcga
     1261 gatgggcggc ccaacgtcac tccagctcgg tgccgcgcca ccgcatgcgg cgcaaccggc
     1321 gcacgtgctg gacctgctga gctacggctc acccgcccca ctcgggttcg atccagcagc
     1381 cgcgacccgg cggttcggct actcgatcgg ccgccgacca ggctttgtca acggctggcc
     1441 gggcttctgg tggacgatca acgggcacat gttccccgac gtgccgatgt atatggtcgc
     1501 cgagggggac gtggtgacca tgcacatctc gaactccagc ggggaactgc acccgatgca
     1561 cctgcatggc catcacgcgg tggtgctcag ccgcaacggc atccgggcta ccgggagtcc
     1621 gtggtgggtg gactcgctca atgtcggtga tggcgagtcc tatgacatcg ccttcgtcgc
     1681 caacaatccg gggctgtgga tggaccactg ccacaacctg acgcacgccg ccgaaggcct
     1741 cgtggcacac ctgatgtacc agggcgtgac cgagccgtac accgtgggcg gcgcatcggc
     1801 taatgaaccg gagtgatcag ccgttctcgc gctcgcgggc cttgcgggtc tcccgttcgc
     1861 tggctttgcg cagggcgtcc accaactcac ccttgttcat cgaagagcga ccgcgcaccc
     1921 tcaacctctt cgcttggtcg agaagctcct gcttgctcgc attcgcgttg acaccgccgg
     1981 cggtcttacc gctgggcggc tgcccggtct cggggtcaac accgccctca gcgcgctcgt
     2041 ctgaggagcc cttgccgttc ttcggctccc aatggtcgcc gaccttctgg tgggtatgtt
     2101 tcagcgccgc gtaggcggtc cggtgcgacc gctcaccttc accgtaggtc ccgactgcgg
     2161 agtcatgcgc cttggaccag gtccgctgcg ccttctccgg ggagcgttgc agggtgctgg
     2221 gcaactcttc tttggccggc accggcctca cctcctctga cgatgactcg tcacaggaat
     2281 acccatctag tcaaggcttg acaccaggag cgtgagtcac caggcgccga ccgtgcacat
     2341 cacggcgagc acgtcagctg cggtcggcat ggcgttgatc tcggcgcgga tccggctcgc
     2401 ggcggcattg aactccggct cggtgatcag gcgcctggcg gcggcagcga ccgcgtgtgc
     2461 ggagaactcg tcgggggtca gcgtgagtgc tacccgagcg ttctggcaag cggctgcgtt
     2521 catgaactgg tcggcgccct gcggcaggat cagttggggt aatccgtgcg cgagtgcccc
     2581 gagcatgatg cccgcgccgc cgtgggacac gacgaggctg cagcgcggca gcaggagggt
     2641 gtgcgggatg tagggctcaa acagcacgtg ccgggactgt ggcccgaacc gggtggggtc
     2701 cgtgtcgggc ccggtcgtga cgacgaggtt cagcggtagc tcggacaacc cggcgattgc
     2761 agtctcgagc acgccgggtg cctcattgaa gatcgtgccg agggtcaggt ggatggtctg
     2821 cggatgcggc agtgcggcca gcgcctcggg caaccgctcg cccttcgcgg gctcgcccgc
     2881 caccgggcgc agcggcgtga tccgctgcca ggtcggctca ccgtcgtagc gcaagcccgg
     2941 cgggctgatg tccaggtacg tggcgactct gatttcctcg gcaagcccgg gcgcctgcca
     3001 ctgctcacac agcttcgcaa accccggcgc gaaccaggct tcccacatgt gagccgacgg
     3061 catgggccca agaccgtgca cgacgtggcg ggcaccggta tacgccgcgg cgagagcgcc
     3121 ggccaactcg gtgaactcat gaacgatgat gtcgggtcgc cactgctggg cctgcgggac
     3181 cagctcaacc gcccgcttgg ccgcggagtc gacgaacacg ccctctatct gcgcccgcat
     3241 gcgtgcctcg gaatgcagct cggtcaggtt cgggatggtc accccgacgg acgcgtcggt
     3301 ctccgcgcgg ctggggccga ctagccaggt ctcaaaaccc cggcgctcga gctcgggagc
     3361 cagctcggca ccggtcgcga aggccacatc gtgacctgcc agccgcgctt ggtgcgccag
     3421 cggcaacatc gggttgacgt gcccgtaggc ggggcagctg gtgaacagaa tgcgcatggg
     3481 atctccaggt cgggtggtta cccattattg gtgcgcgggc ttggacaaag attggcggcg
     3541 gtttggaacc ggcctggcgc gctgctcggc ccgaccggct agcaccggta ccgcaagaca
     3601 cggcccccgc gcgttagccg gcggcgcttc atcgcagtgt tacgggcacc gctcgtcaag
     3661 cttgaccgca ccgaagtcga tgcgggtgcc ggcgccgatg gtggcgccca ccggcacatt
     3721 ctgggagcag accttccagt tccggtccag cacctgccgg cggccggcgc ccgttgcgtc
     3781 gtgcgatctc gtcaccgcaa tggcgaatcc agtcagtcgc tgcaccgcgt cctgcgcgcc
     3841 ttgcagattc gagcccacga gatccggcat cgtccaactc gcttgcgagc ccgcagtggg
     3901 cgcagcggaa gagcttgtag agagctgagc tgacgcggtc aggggtgcag tggcgggaat
     3961 gttcgggctc gaggcggtgg gtgggacagc gctggcacac gctgccaatc ccgatccgag
     4021 caggaccgaa atagccaacg tccttgtccc gcaccctatt gagcagattc tccggcctcc
     4081 cagcatttaa gcgctcgaac ccagtatcac cctggtgttg aactcggcgg caccagggcg
     4141 caggacatcc ggggtacctg ccggactgtc ggacggccgc ggggggtgct ccattggcat
     4201 ggagcacccc ccgcggtgcg tgggtcgcgg cgcgtgccgg atcagacgtt gatctccttg
     4261 gcagtgccgg gtgcggtgag ctcgatcttg cgggacttgg ccttctcggc aaccgggatg
     4321 tgcagagtca gcactccggc gtcgtagctg gcctcgacac ggtcggtgtc cagggtgtca
     4381 ccgaggaaca gctgccggct gaacgtcccg cgggagcgtt cgttggcctg cagctcgatg
     4441 tcctcgccgt aggccggctt gcgctcggcc ttgacggtga gcacgtttcg ctcgacgttg
     4501 atgtcgatcg tggacggatc caccccgggc agatcgaagt gcacgacgaa ctggccgtcc
     4561 tggcggtagg cgtccatcgg catgatcgcc gggtgcgacc tggtgccatt ggtgccgaac
     4621 agtgcgtggg tcaagcggtc caactcccgg aacgggtcgg tacgcatcag catcgtggtc
     4681 tctccttcaa ggcgtcgtcg cgacgccgtc ggtacacact gccctagcgt tgcagtgaca
     4741 ctaccgtcaa cgtttcgcgg tcctaacgtg ttcccactga cctatgtttc ttgctagcga
     4801 gtggctcaag gatcacctaa gatcggtcac agtggccgtg agagactcac aagagatctc
     4861 cgcacgagca gggcgtcacg gtcgcgcgca ggaaaaatcg cgattggtca ctgtaggatt
     4921 gttccggtca ggacacgcag atcagggacg gaaacacgcc gcagaccaag caagcttgat
     4981 gacgacgact acccggccta cacgatagga ttggccgcgg acctgctcgg cgtgcaaccg
     5041 gccttcctgc gcagcctcga cgcggccgga ctgctcgcac cgaatcgctc ggtcggcggg
     5101 cagcgccgct actcccgcgc cgagctcacc ctggccttgc gggtgcgtga acttctcgac
     5161 gggaacatgc cgttaatcgc ggccgtccgc atcgtcagcc tggagcgcca gctcgaggcc
     5221 gcccagcagc gcattgccca ccttgaatcg gccatttcca gcaacccgag caagcctcaa
     5281 cactgatctc ctcagccgca gcagcccggc gtgaccccac ctcagctttc gtactaccag
     5341 accgcgttgc cctccgggcc ctcgaagacg tagtccctct ccacaccgtt gggaaacagg
     5401 cgaacctcgc agctattcgt agcggagggc ttcgacggga cgtagccggg cggcccggtt
     5461 ggccgggtac ccaccggcca caagcccgat cacaaggctg atcccgaaag acagcagcac
     5521 cgaggggagg gtcaccctgg gagcgaacgt gtcgagggtg gaaccgagag cgggcgcgac
     5581 ttcggcgccg agcaccgaca gcccgacccc gatcaggatg ccgatcactc cgccgacccc
     5641 ggccagcacg acggactcga taaggaactg ctggaggatc gcgcggcggg tggcgccaat
     5701 cgccttgcga atgccaattt cccgggttcg ttcagtgacg gacaccagca taatgttcag
     5761 cacgccgata cccccgacaa ccagcgagat cgctgcgacg gatgcggtga acagggtgag
     5821 aatactcaga atttgctgga aagtctccag ccggctacgc agagattgaa cgtcgaagtc
     5881 ccttttcccg gcatccttga tccggtgccg gtcgctgagg gtgcgaatca catcgttctc
     5941 ggcggcgggc acagcgttgg cctggttgac ttgcacggtg atctggttga gcttgtcgcc
     6001 accgccgaag acgtagcggc gcacggagct cagcggcatc accacgttgt cgtcacctgg
     6061 ctcgccaacc gtctgcatca ccccgatgac cttgaagctc tggcggttga gtcggagcat
     6121 ctggcccagc gaatcctgag cggtaccgaa cagagtggtc gcaacggtag gaccgaggac
     6181 cacaacccgg gcggtggagc ggacctgcgc atcgtcgaag aacgttccca cctgcaggtc
     6241 ccggttgttc acctcgagcc aacggtccgt ggaaccgatg accttcgagc ggaactggct
     6301 actctcggtt tcggccaggg cgtcaccagt cgtggcgggc agaacaacag cagcgtcggg
     6361 gacctgtctc tgcagagccg tgacatcacc gtcgatcaga tctttcggcg gggaaccacc
     6421 cgggacgttg ccagtggacg gcacaatggt gatcagattc gcgagcggtt gaactttctc
     6481 attgaccgat gcctgcactc cgttaccgat agcgaccaga agaatcaccg cagcgacacc
     6541 gatgatgata ccgagcatcg tcaacacgga acgtaaccgg ttggcacgta atccgcgaag
     6601 tgcgatgcga aaagcttccc gcagactcat tctccacgac gtaactcgct accgccgtta
     6661 tgcacaaggg gtttactgtc tgcgaccgtt tcgtaaccaa ggatttgcgg cactccgccg
     6721 caaccgagcg gcttaacgtg cgggtgcccc ggacgctcgg cacgagcgtt ctgccgaagg
     6781 gtgagcggtg tggcctcatc gtcagagacg atcgagtgag atcgccgacg cgcctgggtc
     6841 gccgggcgca gccagcgcac ccattgtgta gcctcgccct ctcgcgatcg tcgcgcactg
     6901 gcctgcggga ggccgagggc ggcgaatctg gagctagcgt cacacgggag ggaaagctcg
     6961 catgacccac cgcatggtga agggaccccg ccgcacggtc cgtaccacgg caatggggtt
     7021 cgccgctgcc gcggcggtgg tgttggtcgc agtggagctg cccagcaccg cctcagccgc
     7081 agctccgagc tgggcacccg ccgggcaagc cgccatccac cccggggtga tgaccagcac
     7141 cgagggcggc gattgcacct cgaacttcat ctactacaac gccaccgacg tgttcatcgg
     7201 ccaagccgcg cactgcgccg gcaccggagc tccgaccgaa accagcggct gcaccgcggg
     7261 caccaaaccg ctaggcacca aggtcaccat caagggtgca agcaagccgg gcatcctggc
     7321 gtacagctcg tggatcacca tggcccagcg ccatgagcaa gacaacaaca cctgtgatca
     7381 caatgacctc gcgctcgtca agatcgaccc agctgaccgc gataagatca acccgagcgt
     7441 gccgttcttc ggcgggccga tcggtatctc cacggcccca atcgcctccg gtgaccggat
     7501 atacacctac ggcaattccc cgttgcgggc cggggttacg gcgctatccc ctaaggccgg
     7561 gttcagcctc ggcgacgacg ccggtggctg gacacacacc tgttacacgg taacgccagg
     7621 aatccccggt gactcgggca gcgccgtgct gaccaaggac ggcaaggcac tgggtgtgct
     7681 ggcctcgctg gcattagcac cggtggccgg cagcaacggc gtcggtgaca tgtcccgcga
     7741 gctggactac ctcaacgccc acggcggtct gggcaccgtc tcgctggccc ccggcaccga
     7801 gcccttccat cccgtcattc cctagaacgg cgccgcaggc gtatgtaagg gtgatgccgt
     7861 gcagctgggc atggttggtc taggacgaat gggcgcgaac atcgtgcggc ggttgctgcg
     7921 cggtgggcat gagtgtgtgg tctacgacgt caacgctgcc gcagtgcagg aactcgtcgg
     7981 cgaaggtgca actggcgcgc acacactggc ggagttcgcg gccgcgttga acaccccccg
     8041 agctgcatgg atcatggttc cgaccgctct ggccggacag gttgtcgagc agctcgccga
     8101 gcacttcg
//
LOCUS       DASVXZ010000702         7777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1602538, whole genome shotgun sequence.
ACCESSION   DASVXZ010000702 DASVXZ010000000
VERSION     DASVXZ010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7777
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1602538"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1333
                     /locus_tag="VF788_14885"
     CDS             <1..1333
                     /locus_tag="VF788_14885"
                     /inference="COORDINATES: protein motif:HMM:NF020243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935446.1"
                     /translation="SVLLERRGAEVRLLGPAQLTGSPGTDILIYLAALDRGRAAVLPE
                     GFTGLRDAVVGGVSELVVITGSGGKFGQTRHANGVPGVGLAGLVRTIAREFPNRLIRV
                     IDVDPKEEPVQIAGHLLAEVLTCQAPTAVGYTAGQRVTLQLAAAPLEPGGSGRLGLGP
                     DSVVLLTGGARGITARVAMGLARASGSHLELVGRTQAPIGDEDPLTAAAADRIALRRV
                     LAQAGGHTPAEIEVTTNRILAEREIRATLAELAGVAASVRYSSIDVRDPAAVKALVDG
                     VYQRHGRLDGIVHGAGVLADRLMVDKSSTEFAGVWQTKVDGARALAEAARGDLSFLVL
                     FGSVSGVFGNRGQVDYSAANDALDTLARIWTPKTDGRVLAVDWGPWAAADDGTGMVSA
                     ELTREYARRGVGLIEPDDGVTCLLSELALGTEPQVVYMCADPAAFEVGRNG"
     gene            1326..5747
                     /locus_tag="VF788_14890"
     CDS             1326..5747
                     /locus_tag="VF788_14890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005152712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEX8935447.1"
                     /translation="MAEPVEVAIVGMAAVFPGAPDLATYWSNILAGVDAITDVPASRW
                     DPSYYDPAAAATRRGDRLYCRRGGFLQSAAFDPTRFGIMPLAVSGTEPDQLLALHAAA
                     EALADAGGEDRLGDRSRVGVIVGRGAYLTPGLARLDQRVRTANQLVTTLRELLPDLGD
                     AELDRVRTAFQAQLGPEQPETAVDLVPNLVASRVANRLDLAGPAYTVDAACASSLVAI
                     DHAVTELTTGRCDVVLAGGVHHCHDITLWSVFSQLGALSPSQRIRPFHRGADGILIGE
                     GTGIVVLKRLADAGDDRVYAVIRGTGMASDGRASSLMSPRVEGQVRAIERAWRAAELD
                     PTEPGALGLLEAHGTATQAGDDTELASLSTVFGRRNGADCDIGIGSVKSMIGHAMPAA
                     GVAGLIKAVLAVHHGVLPPTLHCDDPHQALAGSRFAPVIEARPWPSDGRAPRRAGVNA
                     FGFGGINAHAILEQPPDTRRSPRSRPPGPERLLLLSGKTPAELARRLEVPDAGLLSQD
                     DAGSPPAGGPCRLAIVAPTTRRLMLARRIVAQGAPWRGREDIWFTTAPLHSAGSCQQD
                     GRKPTQGRLAFLFPGLEHGFEPRVDDVADHFGLDRPDLGDTAVLGRHGLGVLTVGRLL
                     DAALHELGVMPDLVAGHSVGEWNAMTAAGIYPRRAVEELIASYDPESLHVPGLLFAAL
                     GCGAEQAAEVINDLDGVVISHDNCPHQSIVCGAEAGVAAVLDRLVARGITGQVLPFRS
                     GFHSPMLEPYLRGILDTFRGLPVRPPSRPIWSATTVERYPDSPDRIRELASNHLLEPV
                     RFGPLLRRLYEAGTRAFVQVGTGSLPGFVADTLAGLPHLAVTANAPRRSGLDQLRRVA
                     AALWVEGWTPRFERLPHVARVRARVPANSGGPIIPLNLGTPMVRLGNAVAALTPPPAR
                     SALPSELSVTGLSSTGHPMLAEFGAALRDATAAATEVLGSWSRTAPRQASTTRTFSLA
                     TMPELTDHCFYRQPEGWPELADRYPVVPMTTVLELMADAARALVPGRTVVGVKDVRAM
                     RWLAVAPPVSVTTNASLDPDGNVTVILDGYVRATMLLADDYLASPATLPQPPMPQPPL
                     SGQQPGEVTARELYRDRWMFHGPAFQGVTVLGPVTEHGIVGELSVPSAPGALLDNAGQ
                     LLGFWIMMRTARDRLAFPAGIDQLHYYGSPPMRGERVRCVVRIRSVSDTEVVADLELR
                     RADGQLWARIDRWRDRRFNTDEVTWPVFVFPEHNRIAQQQPSGWFLARDRWPDPATRE
                     LIMRRYLGAAERADYQRRNPRAARQWLLGRIAVKDAVRQWLWDTGAGPVYPIEITVTN
                     DPSGRPHVVGPFTEPPEVSLAHSGSLAAALVGDPGCSRGVGIDIEQIADRDDNAIAAI
                     FTDAERRLLDTQCTSAAHRPSWVTRFWAAKEAVAKAAGTGLAGRPHRFAVERVDGDRL
                     LVMTGETAPSRWAHTTVGAEPEPYAVAWTEEGETDDA"
     gene            5737..6051
                     /locus_tag="VF788_14895"
     CDS             5737..6051
                     /locus_tag="VF788_14895"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEX8935448.1"
                     /translation="MTPNEERILAEVTLMLVEIIGDNYILGLDIGMDTSFNTDLELES
                     IEFVRLAARLTEHYGERVNFVAFLADKEINEIIGLTVGAVVSHIADRMATSTAATGHV
                     DG"
     gene            6044..6904
                     /locus_tag="VF788_14900"
     CDS             6044..6904
                     /locus_tag="VF788_14900"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8935449.1"
                     /translation="MADVIADGIRFHVQRLPAHRPDGSTDCPTHPPTVVFVHGLVIDN
                     MASFYYTLANPAARAGADVIMYDLRGHGGTERPQTGYSLEASVRDLIALLDTVGVTGP
                     IHLVGNSFGGTIALALAMTHPERVASLLLIEAAVVTEDWVEQTSSKVEHTTRMLAIDR
                     SRLLAALRGKGFQLRGRRAERLSAVVDTILNDTTLAADLATVQPFSRADLQSVTCPVV
                     AVYGAKSDIIHHAYTLKHFLPNCDLTVVPDCSHFLIAEAPGVVRKLLLRRLASDAMAE
                     RISVAKAPKR"
     gene            6901..>7777
                     /locus_tag="VF788_14905"
     CDS             6901..>7777
                     /locus_tag="VF788_14905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8935450.1"
                     /translation="MSRFLFVVPPEVGHTFPTVAVGQELTGRGHQVAWAGCPKAVRPL
                     LPPSAQLIPVAANFGGETRTQIQARSLGLRGAEAFRFLWADYAIPLATSMAPGVAAAV
                     DEFRPDVLVVDQLALAGALVAHQRGLPWATSATTSVELTDPLALMPKLADWAMRHLYD
                     FQRDIGVPEGQRVDLRFSEHLVLVFSTEALIGPVNAFPSHYAFIGPSIGVRDGADTFP
                     WGWMDPTRQHVLVSLGTCNREAGRRFFATAVAAVNPLAERLQAILVAPPDHLGPVPDH
                     VLVREFVPQLDLLPHL"
BASE COUNT         1222 a         2676 c         2617 g         1262 t
ORIGIN      
        1 atcggtgctg ctggagcggc gcggcgcgga ggtgcggctg ctgggtcccg cacaactcac
       61 cgggtcgccc ggcaccgata tcctcatcta tctcgccgcg ctggatcggg gccgggcagc
      121 ggtgctgccc gaggggttca ccgggctccg cgacgccgtc gtcggcgggg tcagcgagct
      181 ggtcgtcatc accggctctg ggggcaagtt cgggcagacc cgccacgcca atggtgtgcc
      241 cggagtcggg ttggccggcc tggtccggac gatcgcgcgg gaattcccaa accgccttat
      301 ccgagttatc gatgtggatc ccaaggagga accggtccag attgccggac acctactagc
      361 cgaggtgttg acctgtcagg cacccaccgc ggtgggttat acggccggac agcgggtgac
      421 gctgcaacta gccgccgcgc cgctggaacc gggcggctcc ggcaggctcg gactgggacc
      481 agactcggtc gtcctgctca ccggcggcgc ccgcggcatc accgctcggg ttgcgatggg
      541 cctggcccga gccagcggca gccacctgga gctggtcggc cggacccagg ccccgatcgg
      601 cgacgaggac ccgctgaccg cagcggccgc tgaccgtatc gcattgcggc gggtactggc
      661 tcaagccggg ggtcacaccc cagctgagat cgaggtaaca accaaccgga tcctcgctga
      721 gcgggagatc cgcgcgacac ttgccgagct ggccggggta gccgcctcgg tgcgctactc
      781 ctcgatcgac gtgcgggacc cggctgcggt aaaggctctg gtggatggcg tctaccagcg
      841 gcatggccgg cttgacggga tcgtgcatgg tgccggggtg ctggcagacc ggctgatggt
      901 cgacaagtcc tccacggaat tcgccggtgt ctggcagacc aaggtcgatg gggccagagc
      961 gctggcggag gcggcccggg gggatctcag cttcctggtg ctgttcggca gcgtgtcggg
     1021 ggtgttcggc aatcgcgggc aggttgatta ctccgccgcc aacgacgcgc tcgacacgct
     1081 ggcccggatt tggacgccca aaaccgacgg tcgggtgctc gcggtcgact gggggccgtg
     1141 ggcggctgcc gatgacggga ccgggatggt ctccgctgag ctgacgcggg agtacgcccg
     1201 gcgcggcgtc ggcctgatcg agcctgacga cggcgtcacg tgcctgctca gcgaacttgc
     1261 cctggggacc gaaccccagg tcgtttacat gtgcgcagac ccggcagcgt tcgaggtcgg
     1321 acggaatggc tgaaccggtc gaggtggcca ttgtcgggat ggccgcggtg ttcccaggcg
     1381 ctcccgacct ggccacttac tggtccaaca tcctggctgg tgtggacgcg atcaccgacg
     1441 tgccagcctc ccgctgggac ccctcgtact acgatcccgc ggccgcggcc acccggcgcg
     1501 gggaccggct gtactgccgc cgtggtggct tcctccagtc ggctgccttc gacccgaccc
     1561 ggttcgggat catgccgttg gcggtctccg gcaccgaacc cgaccaattg ctcgccctgc
     1621 acgctgccgc agaggcgctc gccgatgccg gcggtgagga ccggctcggc gaccggtccc
     1681 gggtcggcgt gatcgtcggc cgtggcgcct atctaactcc gggcctggca cggctcgacc
     1741 agcgggtccg gaccgcgaac cagctcgtca ccacgctgcg cgagctgctc ccggacctcg
     1801 gggatgccga gttggaccgg gtccggacgg ccttccaggc ccagctcggt ccggaacagc
     1861 cggagaccgc ggtcgacctg gtaccgaacc tggtcgcctc acgggtggcc aaccggttgg
     1921 acctggccgg ccccgcctac accgtcgacg ctgcatgcgc ctcatcactg gtcgccatcg
     1981 accacgccgt cacggaactg accaccggcc ggtgcgacgt ggtgctcgcc ggcggagtgc
     2041 accactgcca cgacatcacg ctgtggagcg tgttcagtca gctcggagcg ctgagcccca
     2101 gccagcggat ccggcccttc caccgcggcg ccgacggcat cctcatcggc gagggcaccg
     2161 gaatagtggt gctcaagcga ttggccgacg ccggggacga ccgggtctac gcggtgatcc
     2221 gcggaaccgg gatggccagc gacggccgag cgagcagcct gatgagcccg cgcgtcgaag
     2281 gccaggtacg ggctatcgag cgggcctggc gggccgccga gctggacccg accgaacctg
     2341 gtgcgctcgg actgctggag gcacacggca ccgcaaccca ggccggtgac gacaccgagc
     2401 tggcctcgct gagcaccgtc ttcggacggc ggaacggagc tgattgcgac atcggcatcg
     2461 gatcggtgaa gtcgatgatc ggacacgcga tgccggccgc cggcgtcgct gggctgatca
     2521 aggctgtgct ggcggtacac catggggtgc tgccgcccac cttgcactgc gacgatccgc
     2581 accaggcgct agccggttcc cgcttcgccc cggtcatcga agccagacca tggccatccg
     2641 acggtcgagc accgcgccga gctggagtca acgcattcgg ctttggcggc atcaacgcgc
     2701 acgccatcct cgagcagcct ccggacaccc ggcgctcccc aaggtcacgg ccacctggtc
     2761 ccgagcggct gctgctgctg tccgggaaaa cgccggcgga gctggcccgg cgacttgaag
     2821 tgccggacgc cggcctgctg agccaggacg atgcgggtag cccgccagct ggcgggccct
     2881 gccggctggc gatcgtcgcg cccaccacgc gccggctgat gttggcccgc aggatcgttg
     2941 cacagggcgc accgtggcgt gggcgcgaag acatctggtt caccaccgca ccgctgcact
     3001 ctgctggatc ttgccagcag gacggcagga agccgacgca gggccggctg gccttcctgt
     3061 tcccggggtt ggagcatgga ttcgagcctc gggtagacga tgtcgccgac cacttcgggt
     3121 tggaccggcc agacctcggc gacaccgccg tactcggtcg gcatggcctc ggggtactca
     3181 ccgtcggccg gttgctcgac gccgcattgc atgaactcgg cgtgatgccc gatctggtgg
     3241 ccggacacag cgtcggcgaa tggaacgcga tgaccgccgc cggcatctac ccgcgccgcg
     3301 ccgtcgagga actcatcgcg tcctatgacc ccgagtcact acacgttccc ggcctgctgt
     3361 tcgccgcact cggctgcgga gccgagcagg ctgccgaggt gatcaacgac ctcgacggag
     3421 tcgtgatctc gcacgacaac tgcccgcacc agtcgatcgt ctgtggtgcc gaggctggcg
     3481 tggccgcggt cctggatcgg ctggtggcac gcggaatcac cggccaggtg ttgccgttcc
     3541 ggtccggttt tcactcaccg atgctggaac cgtatttgcg cgggattctg gacaccttcc
     3601 gtggcttacc cgtgcggccg ccaagccgcc cgatctggtc ggccacgacc gtcgaacgct
     3661 accccgacag cccagaccgt atccgcgagc tcgccagcaa ccacctgctc gaaccggtcc
     3721 gcttcgggcc gctgctacgg cggttgtacg aggcgggaac gcgagccttc gtccaggtcg
     3781 ggaccggaag cctgcccgga ttcgtagccg acacgctggc gggcctgccg cacctcgcgg
     3841 tgaccgcgaa cgccccccgg cggtcgggcc tcgaccaact ccggcgagtc gccgcggcgt
     3901 tatgggtaga gggctggact ccccggttcg agcgcctgcc tcatgtggcc cgggtccgcg
     3961 cacgggtgcc cgccaattcc ggcgggccta taataccgct caacctcggt acgccgatgg
     4021 tccggctcgg caacgccgtg gcggcgctga ctccaccacc ggccagatct gccctcccgt
     4081 ctgagctgtc tgtcacgggg ttatccagca cggggcaccc gatgctggcc gagttcggcg
     4141 ccgcgcttcg cgacgccacg gccgctgcta cggaggttct cggttcctgg tcacgaaccg
     4201 cgcccagaca ggccagcaca acccgaacct tctctctggc gaccatgcca gagctcaccg
     4261 accactgctt ctaccggcag ccggagggct ggcccgagct ggccgaccgg tatccggtgg
     4321 taccgatgac cacagtcctc gagctgatgg cggatgccgc ccgggctctg gtccccggcc
     4381 gcaccgtcgt cggcgtcaaa gacgtccggg caatgcgctg gctcgcggtc gcccccccgg
     4441 tcagcgtcac gactaacgca tcgctggacc cggacggcaa cgtgaccgtg atactcgacg
     4501 gttacgtgcg cgccacaatg ctgctcgccg acgactattt ggccagtccg gcgacgctgc
     4561 cccagccgcc gatgcctcag ccgccgctgt ccgggcaaca gcccggcgag gtcaccgcgc
     4621 gagagctgta ccgggatcgc tggatgttcc acggcccggc gttccagggc gtcaccgtgc
     4681 tcggtccggt caccgagcac gggatcgtcg gcgagctgtc cgtcccgtcc gcacccgggg
     4741 cgctgctgga caatgccggg cagttgctcg gcttctggat catgatgcgg accgcgcgag
     4801 atcggctcgc gttccccgcc gggatcgacc agctgcacta ctacggctca cctccgatgc
     4861 gcggtgagcg agtgcggtgc gtggtccgga tccggtcggt gtccgacacc gaggtcgtcg
     4921 ccgatctgga gctgcggcgc gcggatggcc agctgtgggc ccgcatcgat cggtggcggg
     4981 accgtcgatt caataccgac gaggtgacct ggccggtctt cgtcttccca gaacacaacc
     5041 ggatcgcgca gcagcagccc agcgggtggt tcctggcccg ggatcggtgg cctgatccag
     5101 cgactcggga actgatcatg cgtcgctacc tgggcgccgc cgagcgtgcg gactaccagc
     5161 ggcgcaatcc gcgagcagcg cggcaatggc tgctgggccg gatcgcggtc aaggacgcgg
     5221 tccgccagtg gctctgggac accggtgccg gcccggtgta cccaatcgag atcacggtta
     5281 ccaacgaccc gtcgggacgc ccgcatgtag tgggcccgtt caccgaaccg cccgaggtgt
     5341 cgctggccca cagcggatcg ctggccgccg cgctggttgg tgatcccgga tgctcgcgcg
     5401 gcgtgggcat agacatcgag caaattgccg accgagacga taacgccata gcggcgatct
     5461 tcaccgacgc cgaacgccgt ttgctcgaca cccaatgcac ctcggccgcc catcggccca
     5521 gctgggtgac ccggttctgg gccgccaaag aggccgtcgc caaggcagcg ggcaccgggc
     5581 tggcgggccg cccgcaccgc tttgcggtcg aacgggttga cggggaccgg ctgctggtca
     5641 tgaccggcga gacagcgcct agccgatggg cacacaccac cgtgggcgcc gagcccgagc
     5701 cgtacgcagt ggcctggacc gaagaaggag aaacggatga cgcctaacga ggaacgaatc
     5761 ctggccgaag tcaccctaat gctggtggag atcattggtg acaattacat actgggctta
     5821 gacattggaa tggacacttc ctttaatacc gatctcgagt tggaaagcat cgaatttgtc
     5881 cggctggccg ccaggctcac cgagcactac ggcgagcggg tcaactttgt cgctttcctg
     5941 gcggacaaag agatcaacga gatcatcggg ctgacggtcg gtgcagttgt cagccacatc
     6001 gcggaccgca tggccacctc caccgccgcc accgggcacg tagatggctg acgtcatcgc
     6061 tgatggcatc cggtttcacg tccagcggct gccggcgcac cgcccagacg ggtccacgga
     6121 ttgtccgaca cacccaccga ccgtcgtgtt cgtgcacggg ttggtcatcg acaacatggc
     6181 gagcttctac tacacactgg ccaacccggc ggctcgcgcc ggcgctgatg tgatcatgta
     6241 cgacctacgc ggacacggcg gtaccgagcg accccaaacc ggctactcct tggaggcgtc
     6301 agttcgcgac ctcatcgcac tcctcgacac ggtaggggtg accgggccga ttcacctggt
     6361 cggcaacagc ttcgggggaa ccatcgcgct ggcactggcc atgacccacc ccgagcgggt
     6421 ggcgagtctc ctgttgatcg aagccgcggt cgtaaccgaa gactgggtag aacagaccag
     6481 cagcaaggtg gaacacacga ctcgcatgct cgcgatagac aggtcaaggc tgctcgccgc
     6541 gctacgcggc aagggcttcc agctcagagg gcgcagggcc gaacgtctgt ccgccgtggt
     6601 cgacaccata ctcaacgaca cgacattggc cgcagaccta gcgaccgtac agcccttttc
     6661 ccgtgccgat ctgcagtcag tgacctgccc agtggtcgcc gtgtacggcg caaaatccga
     6721 cattatccac catgcctaca cgctcaaaca cttcttgccg aattgtgacc tcaccgttgt
     6781 gccggactgt agccacttct tgatcgcgga ggctccgggc gtcgtgcgca agctgttgct
     6841 acggcggctg gcctctgatg cgatggccga gcgtatatcc gtcgcgaagg caccgaagcg
     6901 atgagccggt tcctcttcgt ggttccgccg gaggtcgggc acactttccc cacggtggca
     6961 gtgggccagg aactcaccgg ccgcggccac caggtcgcgt gggcggggtg cccgaaggcc
     7021 gtccgtccgc tgctgccacc aagcgcgcag ctgattccgg tcgcagcgaa cttcggtggc
     7081 gagacacgga cgcagatcca ggctcgctcg ctcggcctgc gtggagcaga agcgttccgg
     7141 ttcctctggg cggactatgc aatcccactg gccacctcaa tggcgccggg tgtggcggcc
     7201 gcggtagatg agttccgtcc ggatgttctg gtagtcgacc aactagcgct ggccggcgca
     7261 ttggtagccc atcagcgcgg gctgccgtgg gcgacgtcgg ccaccacgtc ggtagagctg
     7321 accgacccgc tggcgctgat gcccaagctc gccgattggg caatgcgcca tctgtacgac
     7381 tttcagcgtg acatcggcgt acccgagggg cagcgcgtcg acttgcgatt ctccgagcac
     7441 ctggtgctgg ttttcagcac cgaggcgctg attgggccgg ttaacgcctt ccctagtcac
     7501 tatgcgttca tcggtccctc gatcggcgtc cgcgacggcg cggacacgtt cccttggggc
     7561 tggatggacc ccacccgcca gcatgtgttg gtttcgctgg gcacctgcaa ccgggaggct
     7621 ggccggcggt ttttcgccac cgcggtggca gcggtcaacc cactggccga gcggctgcag
     7681 gcaatcctcg tcgctcctcc cgaccatctc ggcccagtgc cggaccatgt cctggtccgc
     7741 gaattcgtcc cgcagctcga cctgcttcca cacctgg
//
LOCUS       DASVXZ010000703         1759 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1294232, whole genome shotgun sequence.
ACCESSION   DASVXZ010000703 DASVXZ010000000
VERSION     DASVXZ010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294232"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..855)
                     /locus_tag="VF788_14910"
     CDS             complement(10..855)
                     /locus_tag="VF788_14910"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8935451.1"
                     /translation="MNTTVIPAVEMEFPLLELRDVSKTYRSGSLEVEALRGACITIRQ
                     GEYVAITGPSGSGKSTLMHLLGCLDSPTSGTYRLAGQDVSTMSEEELADVRNRRIGFV
                     FQQFNLLASLTAGRNVELPLCYAGIRRTERSSMAREALARVGLAHRVEHRPGELSGGQ
                     QQRVAIARALVGDPALILADEPTGNLDSTSTTDVLGLLADLHAAAGPSCSSRTRPMWL
                     PRPSGPCASWTGRFARTANTCTGDDTPCLRERHTGQDGPTRPRRGRRARPGCRGCGDE
                     LAGDH"
     gene            complement(859..1212)
                     /locus_tag="VF788_14915"
     CDS             complement(859..1212)
                     /locus_tag="VF788_14915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935452.1"
                     /translation="MTGDPGNLPIGATAQISIIVKQLTDVVVVPRAAVHSDGGRSVVY
                     EMSGAQQVPHPVTVGLSSGGQDQITEGLAAGTRIVLPAAPAGTGAGGTGRGGGGFGDG
                     GGLGGGGRAPGGRTG"
     gene            1392..>1759
                     /locus_tag="VF788_14920"
     CDS             1392..>1759
                     /locus_tag="VF788_14920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935453.1"
                     /translation="MLITTIWALDAEVVVADAMLDAAAAPEPLVPVGPLPLDVPPEPA
                     AEVPDTCCPTVRVTAAMVPSNGAVKVARDRFCCATASCAFDEANAALSALICAAEAPD
                     AWSEATLAWLAATAARAWAT"
BASE COUNT          258 a          618 c          574 g          309 t
ORIGIN      
        1 aggccggtgc taatggtctc cagccagttc atccccgcac cccctgcacc ccggtcttgc
       61 ccgtctcccc cgtctcgggc gtgtcggtcc gtcctgcccg gtgtgtcgtt ctctcaggca
      121 cggtgtgtcg tcccccgtgc acgtgttcgc ggtccgcgca aatcgccccg tccaggatgc
      181 gcacggtccg ctgggccgcg gcagccacat cggcctcgtg cgtgatgagc acgatggtcc
      241 ggcggcggcg tgcaggtcgg cgagtaggcc gagcacatct gtggtcgagg tggagtccag
      301 gttgccggtc ggctcatcgg ccaggatgag ggccggatcc ccgaccaacg cccgcgcgat
      361 ggccacccgc tgctgctggc cacctgagag ctcgcccggg cggtgctcca cccggtgcgc
      421 cagccctacc cgagctagtg cttcccttgc catagagctg cgctcggtgc gccggatacc
      481 cgcatagcac agcggtagct cgacattgcg ccccgccgtt aacgaggcca acaggttgaa
      541 ctgctggaac acgaagccga tccggcggtt gcgaacgtcc gccagttcct cctccgacat
      601 cgtgctgacg tcctggccgg ctagccggta ggtccctgac gtcgggctgt cgagacaacc
      661 caggaggtgc atcagggtcg acttcccgga tccggaggga cccgtgatcg cgacgtactc
      721 cccttgccgg atcgtgatgc acgctccgcg cagtgcctcc acttccagcg atccgctgcg
      781 gtacgtcttg ctgacgtcgc ggagctccag gagcggaaac tccatctcca ctgcgggtat
      841 cacggtggta ttcatcgctc aacccgtcct gccacccggg gcgcggccgc caccaccgag
      901 accaccgcca tcaccgaaac cgccaccacc tcgcccggtg ccacctgcgc cggttccagc
      961 aggcgcggca ggcaacacga tgcgggtgcc ggccgccagg ccctcggtga tctgatcctg
     1021 cccacccgag ctgagcccta ccgtcaccgg gtgcggtacc tgctgagcgc cggacatctc
     1081 atagaccacg gaccttccac cgtcggagtg cacggcggcg cgaggcacta cgacgacgtc
     1141 ggtgagctgc ttgacgatga tcgagatctg agcggtggca ccgatgggca ggttgccggg
     1201 atcgccggtc acgttgatga cgacccggat aggtggtgat gcccgaactc tggctgccga
     1261 ccatccccac cgaggccacc gtgccgaaga tctggctggt cgacccgttc ggcacgataa
     1321 ccgcctgatc accggtgcgc agctggctga cctgggtgtc gtcgacgtcg gcgttgacaa
     1381 cgtaagttcc tgtgctgatt accacgatct gggcgttgga cgctgaggtg gtcgtggcag
     1441 acgcgatgct cgacgctgcg gctgcgcctg agccactggt tccggtcggt ccacttccgt
     1501 tggacgttcc gccggagcct gctgccgagg tgcccgatac ctgctgccct accgtcagag
     1561 tgaccgcggc gatggtgccg tcgaacggtg cggtcaaggt agctcgggac aggttctgct
     1621 gcgcgacggc cagctgcgcg ttcgatgagg ccaatgcggc gttgtcggcg ttgatctgcg
     1681 ccgccgaggc accggacgcc tggtctgagg caactctcgc ctggctggcc gccaccgccg
     1741 ctcgggcctg ggccacctg
//
LOCUS       DASVXZ010000704         4271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_705723, whole genome shotgun sequence.
ACCESSION   DASVXZ010000704 DASVXZ010000000
VERSION     DASVXZ010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4271
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_705723"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1174)
                     /locus_tag="VF788_14925"
     CDS             complement(<1..1174)
                     /locus_tag="VF788_14925"
                     /inference="COORDINATES: protein motif:HMM:NF024835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935454.1"
                     /translation="MEDARTIGARLRRIRRARGKSLRVVAGLAGMSKSHLDRIERGER
                     ALDSISEIVALANALQIAPSELIRLPVPAPANGHTDSTTNAIGLALDGIEVEHSGGLV
                     LPVAVLRDRVARFHQQKRACRFADVATELPGLIRDLHTTLATGIDHGELLKLAVYLHV
                     HVTRQWLIHAAAPDDLLRRMVFLTRRLAQEHGEVTTLGMAGFAVADTLLAAGEFELGK
                     TALDSLALPPTTAATAGLVGVLTTSHAAAAELNGRPSDAAAAMGASADMAIRFGELGE
                     TDPMGFEFGPTNVGFRQVRLALEAGEPDRAVSIAERLHPDQNPFPCNRVYHWVGYGRG
                     LARLRGRRDDAVRALRRAETIYPLRVQRDPFVREVLGELLTRSRRDAIGRELRGMAY"
     gene            complement(2619..4019)
                     /locus_tag="VF788_14930"
     CDS             complement(2619..4019)
                     /locus_tag="VF788_14930"
                     /inference="COORDINATES: protein motif:HMM:TIGR00879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0051119 - sugar transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HEX8935455.1"
                     /translation="MTSIRSTSERYDVGRAVLLAVVAALGGFLFGFDTAVINGAVLAI
                     RETFRIGAGLTGFVVASALLGCAVGAWLAGKLADRIGRIKVMVLAAALFLLSAIGSGL
                     AYSPYDLTFWRIVGGLGVGAASVIAPAYIAEIAPASIRGRLGSLQQLAIVSGIFVALL
                     SDYFLATAAGGAAGTLWFGLAAWRWMFITLAVPALAYGILALQIPESPRYLMFRGRIV
                     EARAVLSQVLKSGVDDRIREISRTIVQDVRSTFQDLRGPFLGLLSIVWVGILLSVFQQ
                     FVGINVIFYYSSTLWQQVGFTEADSLIITVLTSVTNIIVTLVAIAVIDKIGRRRLLLT
                     GSAGMFVSLATLAYVFGTAPVVNGEPALSNTAGTTALIAANAFVVFFGISWGPAVWVL
                     LGEMFNNRIRAAALGFAASAQWVSNFLVSTTFPVLAAISLGLAYGLYTVFALLSLLFV
                     WKFVPETKGKQLEDMV"
     gene            complement(4137..>4271)
                     /locus_tag="VF788_14935"
     CDS             complement(4137..>4271)
                     /locus_tag="VF788_14935"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013222513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HEX8935456.1"
                     /translation="RNEPDLDDVPESVREELTVHLVADVREVLQLALEPASTAAAAAA
                     "
BASE COUNT          803 a         1349 c         1383 g          736 t
ORIGIN      
        1 tgtaggccat cccgcgcagt tcccggccga tcgcgtcgcg gcgggagcgg gtgagcagtt
       61 cgccgagcac ctcacggacg aagggatcac gttgcacacg aaggggatag atcgtctcgg
      121 cgcgacgcag cgcccgcacc gcgtcgtcgc ggcgtccccg cagccgggcc agcccacgcc
      181 cgtaacccac ccagtggtag acgcgattgc acggaaaggg gttctgatcg gggtgcagcc
      241 tttcggcgat gctgaccgca cggtccggtt cgcctgcttc caaggccaga cgtacctggc
      301 ggaacccgac gttggtcggt ccgaactcga accccatcgg atcggtctca ccgagctcac
      361 cgaaccgaat ggccatgtca gcggacgcac ccatcgctgc ggccgcatcg ctcggacggc
      421 cgttcaactc ggcggctgca gcgtgggatg tcgtgagcac gcccaccagc ccggcagtgg
      481 cggccgtggt cggcggcagg gctagcgagt cgagtgcggt cttccccagc tcgaactccc
      541 cagcggctag cagcgtgtcg gccacggcga acccggccat ccccagcgtc gtgacttcac
      601 cgtgctcctg ggccaggcgt cgcgtcagga agaccatccg gcgcaggagg tcgtcggggg
      661 cggccgcgtg gatgagccac tgtcgggtga cgtggacatg caggtacacg gccagcttga
      721 gtagctcgcc gtggtcgatg ccggttgcca gcgtggtgtg caggtcacga atcagcccgg
      781 gcaattcggt agccacgtcg gcgaaccggc atgcccgctt ctgctgatgg aaccgggcca
      841 ctcgatcacg caataccgca acggggagca ctaacccgcc ggagtgctcc acctcaatcc
      901 catccagcgc aagccctatt gcatttgtgg tgctgtcggt atgcccgttt gccggtgcag
      961 gcacaggcag tcttatcagc tcgcttgggg cgatctggag cgcgttggcc agggccacga
     1021 tctccgagat gctatccaga gcgcgttccc cgcgctcgat ccgatccaag tgcgatttgc
     1081 tcatcccggc gagccctgcg actacccgca acgacttacc ccgtgcgcgg cggatccgac
     1141 gcagccgggc accgatcgtc cgcgcgtcct ccatgtccac gaaaaatcct ctccttgccg
     1201 agaccctctg ccgatgcccc gcagccgtca cccgggccgg tatatcgccc cggcgaggag
     1261 gcggtttaag gctacgtgct cagccgcgcc atgccacgcc tgctctgcct tcgcctgggg
     1321 ccaggggagc ggtgggcgat ggcgtacagg gttccggagc ttccactgtg aacccatacc
     1381 gagattgcag ggcggggaag taagcatcat ggacctgaaa aaagcggatg agcttagaag
     1441 gtacgcgttt cggggtcaac gacgtcgcca atagccagga agcgcggatc gtcagcgtgc
     1501 ccctggatcg cctcgatgaa ctccttgaag ggctcgcctg ttcgtgggtc tcgaacgtct
     1561 cctgatcggc atagctttcg gagagataga aacggttcgg gtgctgggca cccgcgatca
     1621 gctcgaagcg gagcgtgccg gttcggcagc catggagtcc cggccgtccc gcagcgcggc
     1681 gaggatgaac tggtctgaaa gtctgggtcg acgtcaaact ggacaatgag tgcgtacatc
     1741 ctgtcttcct cctgcgctgt taagggacgg acttggccgc ccaagcgtcg cggcggcaac
     1801 ctggtggcct cctcggccgt ggtggtcacg tccggcaccg agcgtcaccg cgctgacaaa
     1861 atttcgtctt tccattcctg atatcccttc actgtcatcg tccgcatagc cctctcctgg
     1921 ttccgcaaat aagggaacct tagggcatgc attccgcaat cgcgttttcg acactattct
     1981 tcggagatga acgggaaaaa cgaggaactg aacataggga ttgcaggaat cctcacaaga
     2041 gatgtccggt tgacgtcggg catttgcgcg agacatacgt attggctcta cgcggtgtca
     2101 aggatggttg agttgacctc gcgctggttg gtcgccacac cacttgggcc ctttcggggg
     2161 cggtgattca gcgttggtgg ttcgagtgag tgaccagcag ccaactcgtg tgattgattt
     2221 atggttctat tcgatccttc ggcacgacgt tggtgatatc gagccggcag acgtctcaat
     2281 ctcgggacat cgggtttcga tcgtctcggc gaggggtgaa gatttcatag cgcgaggctt
     2341 gggccggtgg ccagcctctc cggggatggg tcctggtccg ggtagcagcc caatcgggag
     2401 tgcgcaccgt gatgatcacc ttctggctgt cccttatggg gatggtggtc atcccttggt
     2461 cacgtgccgg actcgtggta ttcgtttgtg actcgcaagg tcatcgatag gaaacccgcg
     2521 cctgcggtgg atgtcaggcg ccatcgggta tctccccggg ggcgagcaag tgggggtgtg
     2581 gatgaccatg gatgtgtcct cgcgcatccg gcgatccgct agaccatgtc ctcgagctgc
     2641 ttgcccttgg tctccggcac gaatttccac acgaacagca gcgagagcag cgcgaagacc
     2701 gtgtagaggc cgtaggctaa tcccaggctg atggcagcca ggacagggaa cgtcgtcgag
     2761 acgaggaagt tgctgaccca ctgagcagac gcggcgaaac ccagagcggc cgcgcggatc
     2821 cggttgttga acatctcgcc gagcagaacc cagaccgcgg gaccccagga gatcccgaag
     2881 aacaccacga aggcgttcgc cgcaatgagt gcggtcgtgc cagccgtgtt gctgagcgcg
     2941 ggttccccgt tgaccacggg ggcggtcccg aagacatagg ccaaggtcgc gaggctcaca
     3001 aacatgcccg ctgagccggt taacagaagc cggcgccggc cgatcttatc tatcacggcg
     3061 atcgcgacca aggtgacgat gatgttggtc accgacgtca gcaccgtgat gatcagcgag
     3121 tcggcctcgg tgaacccgac ctgctgccac agcgtcgagg agtaatagaa gatcacgttg
     3181 atgccgacga actgctggaa aaccgatagc aggatgccca cccagacgat cgataggagg
     3241 ccgaggaacg gtccgcgtag atcctggaag gtggaccgga cgtcctggac gatcgtgcgg
     3301 ctgatctcgc ggatccggtc gtcgaccccg ctcttgagca cctgggacag cacggcgcgc
     3361 gcctcgacga ttcgaccgcg gaacatcaga taccgggggg actcgggtat ctggagcgcg
     3421 aggatgccgt aggcgagcgc aggaacagcc agggtgatga acatccatcg ccaggccgcc
     3481 aggccgaacc agagcgtccc cgccgcacct cccgcggcag tggccaagaa gtaatccgag
     3541 agcagtgcca cgaagatgcc ggagacgatg gccagttgct gcagcgagcc gagccggccg
     3601 cggatcgagg cgggcgcgat ctccgcaatg taggccggcg cgatgaccga agctgcgccc
     3661 acaccaagcc cgccgacgat tcgccagaag gtcaggtcat agggcgagta ggccagaccg
     3721 gagccgatcg cgctgagcaa gaacagcgcc gcggcgagca ccattacctt aatccggccg
     3781 atccggtcag ccagcttgcc ggcgagccag gcccccaccg cacaacccag cagcgcagaa
     3841 gccaccacga agccggtcaa tccggcgccg atccggaatg tctcgcggat ggcgagcacc
     3901 gccccgttga tgactgcggt gtcgaagccg aacaggaatc cgcccagggc ggccactact
     3961 gccaggagga ccgcacgccc tacgtcgtac cgctcactcg tcgatctgat cgacgtcatg
     4021 gctctcccgc ggcgatccgt tcgccgaaat ccaccttgct gtgatgctta ccacatacca
     4081 agccgcggtg cgctgagtgg cgggaacccc cttctcagcg caccgcgctc aactcctcac
     4141 gcagcagcgg ctgcggcggt ggatgccggc tcgagcgcga gttggagcac ctcgcggaca
     4201 tcggcgacca agtgcacagt gagttcctcg cgcaccgact cgggcacgtc gtccaggtcg
     4261 ggctcgttgc g
//
LOCUS       DASVXZ010000705         1859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_526960, whole genome shotgun sequence.
ACCESSION   DASVXZ010000705 DASVXZ010000000
VERSION     DASVXZ010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526960"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..313
                     /locus_tag="VF788_14940"
                     /pseudo
     CDS             233..313
                     /locus_tag="VF788_14940"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(487..1642)
                     /locus_tag="VF788_14945"
                     /pseudo
     CDS             complement(487..1642)
                     /locus_tag="VF788_14945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611484.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     misc_feature    complement(1308..1424)
                     /locus_tag="VF788_14945"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /pseudo
                     /db_xref="RFAM:RF01497"
BASE COUNT          358 a          637 c          516 g          348 t
ORIGIN      
        1 tgcccttgat tctcccgtgc gggaacacgc ggcctcccat tagtcactac caccgcctgc
       61 gtcgacatcc cagcttccct ccgacatcgc gatctggccg gtgggctgat acacgaatac
      121 gcccaggtca catgacgtgg atgaccagtt cggcacccac aggccgagtt tcgggcaccc
      181 acacatccgg atcctcacca gcccgccccg ggcgaacgcg atctgcgaac gaatgatcgc
      241 aaccctgcgc cgtgagctgc tcgacaggat cctggtcgtc gtcaacaaac gccacctacg
      301 ccggatcgtc acgatctacc tgcaccatgt caataccgcg cggccacacc gcacgctgcg
      361 ccaactcgca ccaactcaag ccgataccca gcccccacca gcgatcaacc tcgccgacta
      421 ccaggttccc cgcagagcaa tcctcaacgg gctgaaccgt tccggttatg atagagaccg
      481 ggttgcttac acttcgacca tgttagcagg ttcgttcttc atatggaagg cggcttcgta
      541 ctcgaccggt ggcatgtttt ggcaggagcc gtggatgcgc cggtggttgt accagtccac
      601 ccattcgaac gtcgcgagct caacgtcgtc ccgtgcgcgc cacggccctt tacggttgat
      661 gagctcggtc ttgtagagac cgttgacgga ttccgcgagt gcgttatcat aggagtcccc
      721 gacgctgccg accgacggcg tggcgccggc ctcgacgaga cgttcggtgt agcgtattga
      781 cgtgtactgt gatcctcggt cagaatggtg cacgagcccg tccaacgggc caccgttgcg
      841 gccccagacg gccatctcca gagcatcgag aggaaggtcc gtgcgcatcg acgtatcgag
      901 tctccacccc acaatccgcc gggagaagac atcggtcaca aaggcgacgt agaccatgcc
      961 cgaccaggtc gggacatacg taatgtccgc cacccacaat gcgtttggcc gatccgcggt
     1021 gaactggcgc tcgaccaagt cagcaggccg ctcggcgtgg ggtccgcccg ggtcgtgcgg
     1081 ggccgtccgc caccacgcag ggcgccgacc agcccttcgg cgcgcatgag ccgctcgacc
     1141 gtgcaccgcg ccaccgcgat cccttcccgg ttaagctgaa gccatacctt tcgcgccccg
     1201 tacacttcgt aattctcctt ccatacgcgg cggatctcga taagaagttc ctcatcccgc
     1261 actgcgcggg ccgacggtgg ccgattcttt gccgcatagt acgttgacgg ggcgaactgc
     1321 agcacttcac agatcggctc gaccccgccc aattcttctt ggtggtcgtc gatgaaattg
     1381 actaccgtgg cagtcgcggg tcgagctccc gcgcaaagaa agctgatgcc gctttcagga
     1441 tctcattcgc ccgccgcagt tcacgattct cccgttccaa ctcggcaata cgagcggcat
     1501 ccaccgtcgt cgtacccgct cgggctcctt tatcgacctc ggcctgattc acccacagtc
     1561 gcagcgtcgc cggatgcaca tccagccgct tagcgacagt cgagatcgca cgatgggatt
     1621 cttgcggttg ttccttccgc atctgcaaca caagacgaac cgaacgttca cgaagctcgt
     1681 tgggatactt cctgggagcg ggcacgactc catcctctca aaggttggag tctccaccga
     1741 aaccggggcg gttcatccat gtccctcccg gaaaaccgat aagccagcgt aggccatgtt
     1801 cccgcgcggc gcaggatcgg cgaggtgaag gagtaagcct cagactggac gccgtggcg
//
LOCUS       DASVXZ010000706         2393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_438221, whole genome shotgun sequence.
ACCESSION   DASVXZ010000706 DASVXZ010000000
VERSION     DASVXZ010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438221"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..320
                     /locus_tag="VF788_14950"
     CDS             180..320
                     /locus_tag="VF788_14950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935457.1"
                     /translation="MRAAVVDLLRVLRLGDPVVSARQLADQDSRVRLPALRGLVSPIK
                     PN"
     gene            826..1329
                     /locus_tag="VF788_14955"
     CDS             826..1329
                     /locus_tag="VF788_14955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010305705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase family protein"
                     /protein_id="HEX8935458.1"
                     /translation="MHSLPHLTVPAASIARSGGPARLALSLAADLERWRPLVDYRSDT
                     RWYRLLGRSEQHEVWLLSWLPGQGTDLHDHGPASGSFAIATGTLTERMVAINPGRPPV
                     EETRTLAIGSCRAFGPRYVHQVTNTGVVAAVSVHVYTPALTVMNRYQLEPQGLRHLSA
                     EQAGVDW"
     gene            complement(1410..1499)
                     /locus_tag="VF788_14960"
     tRNA            complement(1410..1499)
                     /locus_tag="VF788_14960"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1463..1465),aa:Ser,seq:cga)
     gene            complement(1559..2020)
                     /locus_tag="VF788_14965"
     CDS             complement(1559..2020)
                     /locus_tag="VF788_14965"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEX8935459.1"
                     /translation="MTVTASADVALVRRALEVARGATTTGDIPVGAVLVDAGGLELAA
                     ACNAREATGDPTAHAEMLALRAGAARLGAGWRLSGCTLAVTVEPCTMCAGALVAARVD
                     RLIFGAWEPKTGAVGSLWDVVRDRRLNHRLEVYGGVLAEECAGLLQRVWRP"
     gene            complement(2017..>2393)
                     /locus_tag="VF788_14970"
     CDS             complement(2017..>2393)
                     /locus_tag="VF788_14970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005441917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA adenosine deaminase-associated protein"
                     /protein_id="HEX8935460.1"
                     /translation="RGHRSTGAVFGLLDVDDEFFVVVRPVPGGVALLLSDAAAALDYD
                     IAADVLDLLRVEVPDEDSVDADDVWPEGDLGLLADVGLPAEEMQVIIDEVDLYPDEQL
                     DMIAQRCGFRSQLSALLAKQPG"
BASE COUNT          411 a          818 c          765 g          399 t
ORIGIN      
        1 tgaacggcgt ctcggcggcc cggcggaacc gcgtgaaccc tgcatcgatt gcaacccggc
       61 ggatggccgc ctcgccggcc tgcgcgccca gcacgttccc gccgggttga gaccgcgcgt
      121 tgggcacgca caggaaactg aagaacgaag agttaggtgc gacccacagg attcaggagg
      181 tgcgggccgc ggtagtggat ctgctgcgag tgctgcgact cggcgatccg gtggtctccg
      241 cacggcaact ggccgaccag gactcccggg tgcggctacc ggcgctgcgc ggactggtgt
      301 ccccaatcaa gccgaactga tcgccgccgc agcgcacgat ccggtccgcg aagtccgcgt
      361 tgccgttgcg gctggtctcg cgccgtcgaa gatccgtcgt caatcggatt tggcaatgca
      421 ctgacggttg ctcgtcgcta ttggctagat cgcggcacgg ggcctgccat attgaccaag
      481 gggtgcgggg agatccagca aagttatcat agtgagcttt agttacatgt tccaatgatg
      541 cgcaaactaa agctgcaggc aaatagcact gcaagcttcc tcgtcgcggt gaagcgtttg
      601 gcgtggtgac ttgaccagga tcggctttga ctggttcgat tactggctgt gaacagtact
      661 ctcgttctgg tccggcggtc cgcggtggat ctgcgtcggg tggcgagtgc gctgtgtccc
      721 gcgcggtgaa ctcactgttc cctgaccgcg cgcacctgat ggcctgccct ttccgggtgg
      781 tggtttctgc gcggtcggtt caccgatccc gcggaggaac tctctatgca ttccctgcct
      841 cacctcaccg tccctgcggc cagcatcgct cgttccggcg gcccggctag gctcgccctg
      901 agtctggcgg ccgacctcga acgatggcgg ccgctcgttg attaccgcag cgacactcgg
      961 tggtaccggc tgttgggacg atccgaacag catgaagtgt ggttgctgtc gtggctgccc
     1021 gggcagggca ctgatctcca tgaccatggt ccagcgtcgg gctccttcgc gatcgcaaca
     1081 ggcacgctga ccgaacgcat ggttgccatc aatccaggcc gaccgccggt ggaagagact
     1141 cgtacgctgg ccatcggaag ctgccgggcg tttgggccac gctacgttca ccaggtgacc
     1201 aacactggtg tggtggccgc ggtgagcgtg cacgtctaca ccccggcttt gacggtgatg
     1261 aaccgctacc agctagagcc acaggggctg cgccacctca gcgcggagca agccggagtg
     1321 gactggtaag tgcgccacgc cggcattaga ccctgacggc agaacgccga tcacccggtg
     1381 ggggaaggtc gactgtttgc gctgttagtt ggcggtagcg gtgggatttg aacccacgga
     1441 gggcgtgaac cctcacgcgc tttcgaggcg cgctccttcg gccgctcgga cacgctaccg
     1501 ccggtgagga tacccgaccc ggcagcgcgg ctcagcggcg ctgccgagct cgcgccattc
     1561 atggccgcca tacccgctga agcagccccg cgcattcctc ggcgagcaca ccgccgtata
     1621 cctccaagcg gtgattcaac cggcggtccc gcacgacgtc ccacagcgag cccaccgcac
     1681 cggtcttggg ctcccacgcg ccgaagatca gccgatccac ccgggccgcc accagcgcac
     1741 cggcgcacat ggtgcacggc tccacggtga ccgccagcgt gcaacccgat agccgccagc
     1801 cagcacccag ccgagccgcg ccagcacgca gggccagcat ctcggcgtgc gcggtcggat
     1861 ccccggtcgc ctcccgcgcg ttgcaggcgg cggccagctc gagaccgccg gcatccacca
     1921 ggacggcccc cacagggatg tcgccggtgg tcgttgcacc gcgagcgact tccagagcgc
     1981 gccgcaccag cgccacatcg gcactggcgg tcacggtcat ccgggttgtt tcgccagtag
     2041 cgccgacaac tgggaccgga atccgcaccg ctgggcgatc atgtcgagct gctcgtccgg
     2101 atacagatcc acctcgtcga tgatcacctg catctcctcc gcaggcagcc ccacatcggc
     2161 gagcaggccg aggtcaccct ccggccagac atcgtctgca tccactgagt cttcatcggg
     2221 aacctcaacc cgcagcagat cgagcacatc ggccgcgatg tcgtagtcca gcgcggcggc
     2281 agcgtccgac agcagcaacg ccaccccacc cggtacgggt cgcaccacga cgaaaaactc
     2341 gtcatcgacg tcgagcaagc cgaagaccgc cccagtggag cggtgtccgc gca
//
LOCUS       DASVXZ010000707         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_527285, whole genome shotgun sequence.
ACCESSION   DASVXZ010000707 DASVXZ010000000
VERSION     DASVXZ010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527285"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VF788_14975"
     CDS             <1..399
                     /locus_tag="VF788_14975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2127 domain-containing protein"
                     /protein_id="HEX8935461.1"
                     /translation="GHGGGGLLQELQRAFAAKESTLWLVGLVLAGYAILEGIEAVGLW
                     FAHRWAEYLTFVATTVLLIPEVYELTDRVTVTKVITLVINLAVVIYLLCAKRLFGLRG
                     GGRAEAAERAHDTGWQALERTLPASSAARS"
     gene            complement(421..>1542)
                     /locus_tag="VF788_14980"
     CDS             complement(421..>1542)
                     /locus_tag="VF788_14980"
                     /inference="COORDINATES: protein motif:HMM:NF037017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEX8935462.1"
                     /translation="QGQVAGLPSGSAPWARVDVPVVPVISARVVTEPPDGATGVSPIA
                     PVRVSVSAGVIDKVSLTSPEGKMVAGQLAPDKSSWTVTEPLGYAKTYSWSGTATGIDR
                     LPRAITGSFQTVEPERLISAQLNVADNATYGIAMPIALTFSSRVIDKAAVERALSVSL
                     SVPTEGSWAWLDDTRVHWRPRTYFAPNTRVNVTAKLYGLAMGGGAFGREDIATAFTIG
                     RSYVLRGDTRTHRLVTYVNGAQAADYPASYGLDSDPGRMTHSGTHVVMGKHPVYYMSN
                     PKYHYQNVEARSAVRISSNGEFIHSAPWSVAQQGRTNVSHGCINLSPANAATVFDAVL
                     LGDPVEIVGTPRQLASRDGDYYDWTIPWEAWTAKSALPR"
BASE COUNT          278 a          486 c          473 g          305 t
ORIGIN      
        1 ggccacggcg gcggggggct tctccaggag ctgcagcggg ccttcgccgc taaggagtcc
       61 accctgtggc ttgtgggatt ggtgctggcg ggctacgcga tactcgaggg aatcgaagcc
      121 gtgggactgt ggtttgctca ccggtgggcc gaatatctca cctttgtcgc cacgacggtc
      181 ctgttgatcc ccgaggtgta cgagctgact gaccgggtca ccgttaccaa agtcatcact
      241 ttggtcatca accttgcggt ggtcatctac ttgctctgcg ccaaacgttt gttcgggctg
      301 cgcggcggtg ggcgcgccga agccgccgaa cgcgcccacg acaccggctg gcaggcgctg
      361 gaacgaactc tgcctgcctc atccgcagcc cgatcctgac cgttccttgt ccgggaattt
      421 ttatctcgga agggcggact tagccgtcca ggcctcccag ggaatggtcc agtcgtagta
      481 gtcaccatct ctggacgcca gttgccgggg tgtaccaacg atttcgaccg gatctcccag
      541 caacacggcg tcgaagaccg tcgccgcatt ggccggcgag aggttgatac aaccgtgtga
      601 gacgttggtc ctgccctgtt gggcgaccga ccatggcgct gaatgaatga actcaccatt
      661 gctggaaatc cgcaccgccg accgcgcttc gacattctgg taatgatact tcggattact
      721 catgtagtag accggatgct tgcccatcac cacgtgggtg ccgctgtggg tcattcgacc
      781 tggatcggag tccaatccgt aactagccgg ataatcggca gcctgagccc cattgacata
      841 ggtcaccaac cgatgggtgc gggtatcgcc ccgtagcacg taagaccggc cgatagtgaa
      901 ggcggtggcg atgtcctcgc gaccaaaggc gccgccgccc atggcgagcc cgtagagctt
      961 tgccgtcacg ttgaccctcg tgttgggagc gaagtaggtc ctcggacgcc aatgcaccct
     1021 cgtgtcatcg agccaagccc aagacccctc ggtgggcacg gacagactca ccgaaagggc
     1081 gcgttctacg gcagctttgt cgatcaccct ggagctgaag gtgagcgcga ttggcatggc
     1141 aatgccgtag gttgcgttat cggcaacgtt gagctgggcg ctgatcagcc gttcaggttc
     1201 cactgtctgg aacgagccgg tgattgcgcg aggcaaccga tcgattccgg tggccgttcc
     1261 cgaccagctg taagtcttcg catagcccaa aggctcggta accgtccaac tcgacttgtc
     1321 cggtgcgagc tgtccggcca ccattttacc ctctggactg gtcagcgaaa ccttatcgat
     1381 cacgccggcg ctgaccgaca cccgcacggg cgcgatcggg ctcaccccgg tggccccgtc
     1441 aggcggttcc gtgacgactc ttgcggagat caccggcacc accggcacat cgacccgggc
     1501 ccatggcgcc gatccggatg gcagtcccgc tacctgcccc tg
//
LOCUS       DASVXZ010000708         3983 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1245153, whole genome shotgun sequence.
ACCESSION   DASVXZ010000708 DASVXZ010000000
VERSION     DASVXZ010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3983
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1245153"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1239)
                     /locus_tag="VF788_14985"
     CDS             complement(<1..1239)
                     /locus_tag="VF788_14985"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX8935463.1"
                     /translation="MPSNHPALGQPCSFRELGIRPELLTVLARQGLTSAFPIQVATLP
                     DALAGRDVLGRGRTGSGKTLAFTIPTITALARSGLRRTAGHPRALVLVPTRELANQVA
                     DTFAPLAAALRQRVTTVYGGVGQGRQVSALRGGIDVLIACPGRLEDLLGQGHVHLDEV
                     EVTVLDEADHMADLGFLPAVRRLLDLTPADAQRLLFSATLDSAVDVLVRRYLTDPVVH
                     SVDPPAAPVSGMMHHVFTVDHADKLSVVRELASGQRRSLLFTRTKHGARKLAKQLTIA
                     GLPAMELHGDLSQNVRARNLAAFSEGRARVLVATDIAARGIHVDEIGLVVHVDPPAEC
                     KAYLHRSGRTARAGADGSVITLCTPEQLGQVRTLTRLAGIRPVLARVCPGAEQIAALT
                     GPPAPLVAPPVAAPPSQHRRG"
     gene            1535..1828
                     /locus_tag="VF788_14990"
     CDS             1535..1828
                     /locus_tag="VF788_14990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020421721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8935464.1"
                     /translation="MTDTRRLPKPVAHEWDWQLKGSCQGLNSSIFFHPDGERGSARSR
                     RADRAKEICHRCPVLEQCRHHALAAREPYGVWGGLTEEERRELWTGQRQLLVG"
     gene            1915..3105
                     /locus_tag="VF788_14995"
     CDS             1915..3105
                     /locus_tag="VF788_14995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8935465.1"
                     /translation="MVVGAGLGGLRTVEFLRAEGFSGRITLVGDELHEPYDRPPLSKQ
                     ILAGQWPEERAALHRGELAELDIALHLGRKAVGVDHSAVDLDDGTRLSYDALVVATGV
                     RPRRLPGQPDHPKLHVLRTLDDCRELRGSISRARSLLVVGAGFIGAEVAATARTAGLE
                     VTMLEALPTPFARVLGEHVGQLCAQLQTDNGVTVRCGVPLEDFIVSESGIAAQLADGS
                     IASADCAVIGVGTVIDAGWLAGLEVSTAGGLLCDTTGLVEGTGNVYAVGDIAAWQHPT
                     VGDRPRIEHWSSAGEQAAVVAQRLAGKQITRQADVVPYFWSDQYGLTLQLIGRSDLAT
                     SVEVLHDPGMIKGTVAGYFANGALVAVLAFHAPRLLNRYRRLVAAGAGEHEVHSTAAE
                     LASR"
     gene            3172..3300
                     /locus_tag="VF788_15000"
     CDS             3172..3300
                     /locus_tag="VF788_15000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935466.1"
                     /translation="MPIEAVGMDAIFLKGVSEGWPAILSGLKTLLEIGEPLLFDAA"
     gene            complement(3380..>3983)
                     /locus_tag="VF788_15005"
     CDS             complement(3380..>3983)
                     /locus_tag="VF788_15005"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX8935467.1"
                     /translation="MVNGAGSVELGRLVLPLAGVTAPVRPGIWRIDPAHSAVAATAVH
                     LGFAKVHGRFRAFAGTLTVADPLELSSVDVIIEAASIDTDNLDRDAHLRSPDFLDVQT
                     FPQIRYTGHRLTVLKPEIWQLDGRLTLKAVTQPVSLNVNYLGTAAGPTDDLRAGFEAS
                     TQLDRDQFGMNWNQSLLAGVLTVGPTLRVTIDIEAVCQRS"
BASE COUNT          709 a         1247 c         1361 g          666 t
ORIGIN      
        1 tccacggcga tgctgtgatg gcggcgcggc gactggaggg gccaccaggg gagccggagg
       61 tccggtgagc gcggcgatct gctcggcacc cggacacacg cgggccagca ccggcctgat
      121 gccggcgagc cgagtcaacg tccgcacctg cccgagttgc tcgggagtgc acagggtgat
      181 caccgatccg tcagcaccgg ctctagcggt gcgaccggaa cggtgcaggt atgccttgca
      241 ctcggcagga gggtccacgt ggactaccaa gccgatctcg tcgacatgga tgccccgcgc
      301 ggcgatgtcg gtcgccacca gtactcgcgc tcgaccctca ctgaacgcag caagattccg
      361 tgctcggacg ttctgcgaga ggtccccgtg cagctccatg gccggcaatc cggcaatggt
      421 caactgcttg gcgagtttcc gtgcgccgtg tttggtacgg gtgaacagca agctgcggcg
      481 ctggccggaa gcgagttcac ggaccaccga aagcttgtcg gcatgatcga cggtgaacac
      541 gtgatgcatc attccggata ctggcgctgc tggcgggtcg accgagtgca ccaccggatc
      601 agtcaggtag cggcgcacca acacgtctac tgcgctgtcc agggtggcgg agaacagcag
      661 cctctgcgca tcggccgggg tgaggtccag cagtctgcgc actgcgggca ggaaacccaa
      721 gtcggccatg tggtcagcct catccagcac cgtgacctcg acctcgtcaa ggtgcacgtg
      781 tccctgaccg agcaggtcct ccaatcggcc gggacaggcg atgaggacgt cgatcccacc
      841 gcgcagcgcg gacacctgcc ggccctggcc gacaccgccg tagacggtgg tgacccgctg
      901 ccgcagcgcg gcagccagtg gggcgaaggt gtcggcgacc tggttggcca gttccctggt
      961 gggtaccagc accagtgcgc gcgggtggcc agcggtccgg cgcagcccgg agcgggccag
     1021 cgcggtgatc gtcgggatcg taaaggcaag agtctttcca ctgccggttc ggccacggcc
     1081 cagcacatca cgaccagcga gtgcgtccgg cagcgtcgcg acttgaatcg gaaatgctga
     1141 ggtgaggccc tgacgggcca gcacggtgag cagctccggt cgtattccga gttcacgaaa
     1201 actgcatggc tgcccgaggg cgggatggtt cgaaggcacg cgagtggtga tcctctcctg
     1261 gagatggtgg ccgctgatgc gtggccaccc cgctttcctg cggagaagca cctgcgccgc
     1321 gacggcgctc ccagctgacc tcggctgcca ccggtgtcgg tgcagcatca ctctccatta
     1381 tgcctcgatc actggcacac cgtgcgtcag gggtcgcaca cggtacaaga cagtccaaaa
     1441 cgccgcctga gatggcatcg ggtttgccgt caccaggcca ggggtatctg tcgcgtaaca
     1501 ccacaccgat tcgaccagct aaggacggtt ggagatgacc gacacccgac gacttccgaa
     1561 gccggtcgct cacgagtggg actggcagct taaaggctcc tgccaggggt tgaatagcag
     1621 tattttcttc catccggatg gggaaagagg gtcagcacga tctcgccgcg ccgaccgggc
     1681 caaggaaatc tgtcaccgct gcccggttct ggagcaatgc cgccaccatg cgctggccgc
     1741 gcgcgagccc tacggcgtct ggggaggctt gactgaggag gagcgccggg agctgtggac
     1801 ggggcagcgc cagctgctcg taggctgagg tgcgaaacca gatcccccag acctagaggg
     1861 aagacccagc cctgagacca tgagtgctcg atgagagggc gcatggtgca cgtggtggtg
     1921 gtaggtgccg ggctgggcgg attgcgcacc gtagagttcc tgcgcgcaga gggtttttcc
     1981 ggccgcatca ctctggtcgg cgacgaacta cacgaacctt acgaccggcc tccgctgtcc
     2041 aagcagattc tcgccgggca atggccggaa gaacgcgccg cgctccaccg cggcgaattg
     2101 gccgagcttg atatcgccct acacctgggc aggaaagcgg tcggcgtcga ccatagtgct
     2161 gtcgacctcg atgacggcac ccggctcagt tacgacgcgc tggtggtggc gaccggtgta
     2221 cggccgcgcc gattgcccgg gcagcccgat cacccgaagc tccatgtgct ccgcacgctt
     2281 gatgactgcc gggaattacg tggctcgatt tcccgggccc ggtccctgct agtggtcgga
     2341 gccggcttca tcggcgccga ggtcgccgcg acggcacgca ctgccggact cgaggtgacc
     2401 atgctggagg cgctgccgac accattcgcc cgcgttctcg gtgaacacgt gggccagctg
     2461 tgcgcccagc tgcagaccga taatggcgtc acggtgcgct gtggagtacc gctggaggac
     2521 ttcatcgtca gcgagagtgg gatcgccgcc cagctggccg atgggagcat cgcgtcagcg
     2581 gactgcgccg tgatcggtgt aggcactgtg attgacgcgg ggtggctcgc tggacttgag
     2641 gtctccaccg ccggcggctt gctctgcgac accaccggtc tggtggaggg gaccggcaac
     2701 gtctatgcag taggcgacat cgccgcctgg cagcacccaa ctgtggggga ccgacctcgc
     2761 atcgaacact ggagctcagc cggcgagcag gccgcagtcg ttgcgcagcg actcgccggc
     2821 aagcagatca cccgccaagc cgatgtcgta ccgtacttct ggtccgatca gtatgggctg
     2881 actttgcagc tgatcgggcg cagcgatcta gcgacgtccg ttgaggtgct gcacgacccc
     2941 ggcatgatca agggaactgt agcgggctac ttcgccaacg gtgctctcgt cgcggtgctg
     3001 gcctttcacg caccccggct gctcaaccgc taccgccggc tggtcgcagc tggcgccggc
     3061 gagcacgagg tccactccac cgcggcggaa cttgcctccc gctagccacc cgtcagcgat
     3121 tgacaggcaa ccgacgagtt gcttagtggc ctcagttacg caaccgttcg gatgcctatt
     3181 gaagcggtgg gtatggacgc gatcttcctc aagggcgtca gcgaaggatg gccggcgatc
     3241 ctttccggtt taaagacgct gctggagatc ggcgaaccgc tgctcttcga tgcggcctaa
     3301 ggatcagggt ccaggtcttg ctgggacaac gtgcggcgat aacggcgatc catatgatca
     3361 gatcggccgc tgaggaaact caagaccgct ggcagacagc ttcgatgtcg atggtgacgc
     3421 gaagggtggg accaacagtg agcactccag cgagcagcga ctggttccag ttcatgccga
     3481 actggtcgcg gtcgagctgg gtgctggcct cgaatccggc gcggagatcg tccgtgggtc
     3541 cagccgcggt acccaggtaa ttgacgttca ggctgacagg ttgggtcacc gctttgaggg
     3601 tgagccggcc atcgagctgc cagatttccg gcttcagcac ggtcagccgg tggccggtgt
     3661 agcggatttg ggggaaggtc tgcacgtcca aaaaatccgg ggaacgtagg tgagcgtccc
     3721 ggtccagatt atcggtatcg atgctggccg cctcgatgat cacgtcgact gagctgagct
     3781 ccagagggtc ggcgaccgtc agagtgcccg cgaacgcacg gaaccggccg tggaccttgg
     3841 cgaaacccag gtggaccgcg gtggccgcca ccgcggagtg ggcgggatcg atccgccaga
     3901 tcccgggccg gaccggcgcg gtaacgccgg ccagaggcag caccaggcgg cctagctcga
     3961 cggatccggc gccgttgacc atg
//
LOCUS       DASVXZ010000709         3067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_936424, whole genome shotgun sequence.
ACCESSION   DASVXZ010000709 DASVXZ010000000
VERSION     DASVXZ010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_936424"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..553
                     /gene="thyX"
                     /locus_tag="VF788_15010"
     CDS             <1..553
                     /gene="thyX"
                     /locus_tag="VF788_15010"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020665901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0009265 - 2'-deoxyribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEX8935468.1"
                     /translation="GHLSVLEHGTVSFYLTGVSRSLTHELIRHRHFSYSQLSQRYVPE
                     RTAAMVEPDVIANDPELHQRFHAAAHASQQAYNDLLAGLEKHFADEPNATLRRKQARQ
                     AARSVLPNATETRIVVTGNYRAWRHFIAMRATEHADVEIRALAVECLRQLHKAAPNVF
                     SDFEICALPDGSEIATSTFVSEG"
     gene            568..747
                     /locus_tag="VF788_15015"
     CDS             568..747
                     /locus_tag="VF788_15015"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX8935469.1"
                     /translation="MALDDARAVIAMQHHTVLATLRRDGSPQTSPVLATVDSEARMVV
                     SSRETAFKVRKGDLR"
     gene            753..1379
                     /locus_tag="VF788_15020"
     CDS             753..1379
                     /locus_tag="VF788_15020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03085 family metal-binding protein"
                     /protein_id="HEX8935470.1"
                     /translation="MTLAAGERRELCDLMDQLGPDAPTLCKGWATRDLAAHLVIRERR
                     VDAAPGILLPVLAGYTARVQRSAAQQPWADLVDLVRNGPPPWSPYALPGLGDKINTME
                     FFVHHEDVRRAQTGWEPRPADSRRAAALWALLGRAARVLYRHSPVGLVLRTPDGLERT
                     VRGGDRSVTLIGSIDELTLHAFGREQTEVDIDGDQVDVAGLQSSQRGL"
     gene            1437..2342
                     /gene="dapA"
                     /locus_tag="VF788_15025"
     CDS             1437..2342
                     /gene="dapA"
                     /locus_tag="VF788_15025"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010306405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEX8935471.1"
                     /translation="MTTAPTSASGQPFGRVLTAMVTPFTSRGELDLDLAQKIAHQLVE
                     RGCDGLVLNGTTGEAPTTTDAEKARLVRAVVQAVGDRAAVVAGAGTYDTAHSVTLARQ
                     AEQAGAHGLLVVTPYYSRPPQTGLIEHFTTVADATDLPVMLYDIPPRSVVPIATETLY
                     RLAAHPRIVAVKDAKGDLGAGAEIIATTELAYYCGDDVLNLPWLAVGAAGFVSVIGHV
                     VADRLRTMITAFDAGEVGAAREFHVSTLSLIRTFSMTGGVAFGKAALRLIGLDAGEPR
                     LPQIAADPEQVAAIAAALVEAGVLA"
     gene            2339..>3067
                     /locus_tag="VF788_15030"
     CDS             2339..>3067
                     /locus_tag="VF788_15030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEX8935472.1"
                     /translation="MSSVPTGTPLPVPGVPTTPPPPLPEGGLRTVALGGIGEIGRNMT
                     VFEHADRLLVVDCGVLFPEDDAPGVDLILPDFRAIEHRLDEIDALVLTHGHEDHIGAV
                     PFLLRLRPDLPVVGSQFTLALVAEKCREHHQKPQLIQVTAGSRHRCGPFDCEFFAVNH
                     SIPDALAVAIRTPAGLVLHTGDVKLDQLPLDGRLTDLAGFSRLGDEGVDLLLIDSTNA
                     EVPGFVTPERDIGPVLDSVIGKATQ"
BASE COUNT          480 a         1036 c         1021 g          530 t
ORIGIN      
        1 cggccacctg tcggtcctcg agcatggcac agtcagcttc tacctcaccg gtgtgtcgcg
       61 gtcattgacc cacgagctga tccggcaccg gcacttctcc tattcacagc tgtctcagcg
      121 ctatgtgccc gagcgaaccg ccgccatggt cgagccggac gtcatcgcca acgaccccga
      181 gctccatcag cgcttccacg ccgcagccca cgccagccag caggcctaca acgacctgct
      241 cgccgggttg gagaagcact tcgccgatga gcccaacgcc acgctgcgcc gcaagcaagc
      301 ccgccaggcg gcccgatcgg tgctgcccaa cgctaccgag acacgcatcg tggtgaccgg
      361 aaactaccgg gcctggcggc acttcatcgc gatgcgtgcc accgaacacg ccgacgtgga
      421 gatccgcgcg ctcgctgtgg agtgcctgcg ccagctgcat aaggccgcgc ccaacgtgtt
      481 cagcgacttc gagatctgtg ccctgcccga tggtagcgag atcgccacca gcacgttcgt
      541 gtccgagggt tgagtagcgt cgccgctatg gccctggacg acgcacgggc ggtgatcgcc
      601 atgcagcacc acacggtgct ggctactttg cgccgggacg gcagcccgca gacgtctccg
      661 gtgctcgcaa ccgtcgacag cgaggctcgg atggtggtga gcagccgcga gacggcgttc
      721 aaggtgcgaa agggtgacct acggtgaggg agatgactct cgcggccggc gagcggcgcg
      781 agttgtgtga tctgatggat cagctgggtc cggacgcccc gaccttgtgc aaggggtggg
      841 cgacccgcga tctggcagcg catctggtga tccgtgagcg tcgggtggac gcagcgccgg
      901 ggattttgct accggtgttg gccggttaca ccgctcgagt gcagcgcagc gcggcccaac
      961 agccctgggc cgacctcgtt gatctggtac gtaacgggcc gcccccgtgg tcgccgtatg
     1021 ccctgcccgg attaggcgac aagatcaaca ccatggagtt cttcgttcac cacgaggacg
     1081 tccgccgagc ccaaacggga tgggaaccgc gtcctgccga ttcgcgacgt gccgcagcgt
     1141 tgtgggccct gctcggccgg gcagctcgtg tgctgtaccg gcactcaccg gtcgggctcg
     1201 tgttgcgcac gccggacggg ctggagcgca ccgtcagggg cggggatcgc tcggtcactc
     1261 tgattggttc gattgatgag ctgacgttgc acgcctttgg ccgagagcag accgaggttg
     1321 acatcgacgg cgatcaggtg gatgtggcgg gtctgcagag cagccagcga ggcctgtagc
     1381 ggctgatgca cctcggccga tgagggttcg ggcactgacg ggtagcgtcc tgcgacatga
     1441 ctaccgcgcc gacgtctgcg tctggccagc ccttcggccg ggtgctcacc gccatggtca
     1501 ccccgttcac ctcccgtggg gagctggatc tcgaccttgc ccagaagatc gcccaccagc
     1561 tggtggagcg aggttgcgac ggtctggtcc tcaacggcac caccggcgag gcgccgacca
     1621 ctacggacgc cgagaaggcc cgcctcgtgc gcgctgtggt acaggcggtg ggtgaccggg
     1681 ctgcggtggt ggccggcgcg ggcacctacg acaccgcgca cagcgtcaca ctggcccggc
     1741 aggcggagca ggccggcgcc cacggtctcc tggtggttac cccgtactac tcccggccgc
     1801 cgcagaccgg cttgattgag cacttcacca ccgtcgcgga cgctactgac ctgccggtga
     1861 tgctctacga tattccgccg cgctccgttg tgccgatcgc gacggagacc ctgtaccggt
     1921 tggccgccca tccacggatc gtcgcggtca aggacgccaa gggagacctc ggtgctggtg
     1981 cggagatcat tgccaccacc gagctggcct attactgcgg ggatgatgtg ctcaatctgc
     2041 cctggctggc ggtgggcgcc gccggattcg ttagcgtcat cggccatgtt gtggccgatc
     2101 gactgaggac catgatcacc gcattcgacg cgggcgaggt gggcgccgcc cgggaatttc
     2161 atgtttccac cctcagcttg atccgcacct tctccatgac tggcggggtg gccttcggta
     2221 aggccgcact gcggctgatc ggactcgatg ccggtgaacc ccggctgccg cagatcgcag
     2281 ccgacccgga gcaggtcgct gcgatcgccg cggcgctggt cgaggccggg gtcctggcgt
     2341 gagctcggtc cccaccggca ccccgctgcc cgtgcccggc gtgcccacca caccgccacc
     2401 gccacttccc gagggtggac tgcgcacggt cgcgctcggt ggtatcgggg agatcggtcg
     2461 caacatgacc gtcttcgagc acgccgatcg gctactcgtc gtggactgcg gggtgctgtt
     2521 ccctgaggat gacgcacccg gggtcgatct gatcctgccc gattttcggg cgatcgagca
     2581 ccgtctggac gagatcgacg ccctggtact cactcatggg catgaagacc acattggcgc
     2641 cgtgccgttc ctgctgcggt tgcgccccga cctaccggtg gtcggctcgc agttcactct
     2701 cgccctggtc gccgagaagt gccgcgagca ccaccagaaa ccgcagctga tacaggtaac
     2761 ggcgggttcc cgacaccgct gcgggccgtt cgactgcgag ttcttcgcgg tgaatcactc
     2821 catccccgac gcgctggccg tggctatccg caccccggcc gggctggtgc tgcacaccgg
     2881 tgatgtcaag ctggaccagc taccgctgga cgggcggctg accgacctcg ctggattctc
     2941 ccggcttggc gacgaagggg ttgacctgct cctgatcgac tccaccaacg ccgaggtacc
     3001 cggctttgtc accccggagc gagacattgg cccggtgctg gattcggtga tcggcaaggc
     3061 tactcag
//
LOCUS       DASVXZ010000710         4997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_438594, whole genome shotgun sequence.
ACCESSION   DASVXZ010000710 DASVXZ010000000
VERSION     DASVXZ010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4997
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438594"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            399..1670
                     /locus_tag="VF788_15035"
     CDS             399..1670
                     /locus_tag="VF788_15035"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEX8935473.1"
                     /translation="MDLVEDLLADDRAHVWHPYGPMPGRTDPLVVHSAAGVRLRLADG
                     THLVDGMSSWWAAIHGYAHPVLDAAVCDQLKRMSHVMFGGLTHEPAVRLARRLVEITP
                     EPLQHVFLADSGSVSVEVAIKMCLQYWRSLGRPGKRRLLTWRGGYHGDTFGAMSLCDP
                     DGGMHWLWSDMLARQLFVPAPPVALDPEYVQLLADAVARHADELAAVIVEPVVQGAGG
                     MRFHDPRYLHVLREITLAHDVLLVFDEIATGFGRTAALFAADHAGISPDVMCVGKALT
                     GGYLTMAAVLCTTRVAEGISGGEVPVLAHGPTFMANPLAAAVASASIDLLLGQDWLSQ
                     VRRLEAGLRAGLAPAAELPGVAEVRVLGAIGVVQLDHDVDLPAATVAAVTQGVWLRPF
                     RDLVYTMPPYVTGEDDLAQITRGVLAAAAAG"
     gene            1976..4261
                     /locus_tag="VF788_15040"
     CDS             1976..4261
                     /locus_tag="VF788_15040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional SulP family inorganic anion
                     transporter/carbonic anhydrase"
                     /protein_id="HEX8935474.1"
                     /translation="MRPPITVAVPLPAPHRRAWSALRHDLPASLVLLLIAIPLSLGIA
                     LASGAPVMAGLIAAAVGGIVAGLLGGSRLQVSGPAAGLTVVVADLIAKYGWGVMCAIT
                     AAAGVLQVIFGVSRVARAALAISPAVVHAMLAGIGITITLGQLHVLLGGAAENNAITN
                     IAELPGQIMEIHYPAALVGLAVIAVVLLWPWVPRPLLHIPAPLVAVVGMTVLASVLAL
                     QVERVALPGSLLDSVRLPELPGDSWGGVLTGVLTVALIASVESLLSAVAVDKLSRGGP
                     TNFDRELVGQGTANTLSGLLGGLPVTGVIVRSSANVAAGARTRASAVVHGVWVILFAV
                     LLVGLIELIPLAVLAGLLVVIGLRLVKLAHLRTARRQGELTIYLITVAGVVLLNLLEG
                     VLIGLGLSLLMVLRRVARSRVHVQRVSPGSDDAPACWRVVVEGTLSFLSIPRLSRVLA
                     QVPRGSHVVVEMIVDFLDHAAYEYLAGWQQQHEASGGTVVIDEIGPAGRNGESGDGPA
                     RRVWMPALPRAFSPWWVWQAKHHDNGHGGLRSLLAGVREYHQRSAAQARPHLTQLADR
                     QHPRALFLTCADSRVVPSMITSSGPGDLFTVRNIGNLVPPSELDSSVAASLEYAVNHL
                     GVPSILVCGHSSCAAMHGLLDGATVDGSLGRWLRWGLPSLQALRAGHPVGVAAAQEGR
                     AEVDQLSMVNVARQVEVIVEHAAVRDAVAAGRVQVSGLFLDIRTARLLLLDREAGRFV
                     PVPDDYLPGVYLPGGLAAPAG"
     gene            4360..>4997
                     /locus_tag="VF788_15045"
     CDS             4360..>4997
                     /locus_tag="VF788_15045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8935475.1"
                     /translation="MGWLDDAAAVRRVDGLRRILRPRPVFEPVVDLASNDYLGLARDP
                     RVVQGAVQAARVWGAGSTGSRLVTGSTELHAQLEEELAAFCGAPAALVFSSGYTANLG
                     AVTALSGPGALVVSDAASHASLVDACRLSRARIVVTPHGDVSAVEGALAARSERRALV
                     ITDSVVSVSGELAPLGQLHEVCRRHGAVLLADEAHGLGVRGPGGRGLLAEHGL"
BASE COUNT          663 a         1603 c         1796 g          935 t
ORIGIN      
        1 tgagctgggg gataccggtg tactgatcac ctgcggcaat ggtgctcgcc gcgagacttg
       61 agcgcggtcc cccgtgtcgt gaaatcatga gatgcgaaaa agatcgactc gatcacagaa
      121 cgtgcaccgt cgccaacatg ccgccattgg gctgtcccct ccccaggtgc caggaaagaa
      181 tgtgcgtccc ccatccatcc ctggcgattg agcgcgcccc cattgcccct ttgcggatga
      241 ttccgtggaa ccatgccgcg ggtcccctga gggaccctgt actgcttgtc atcgccaatg
      301 cgcttcatgg tgttacaccg tgtacattcc gtcaattttg gtgacactgt gtacatgatt
      361 ggcggaattg gcggcacgtg accttaggct caagggtcgt ggacctggta gaggatctgc
      421 tcgccgacga ccgcgcacat gtgtggcacc cctacgggcc gatgccgggc cggaccgatc
      481 cgctcgtggt gcactccgcc gctggagttc ggctgcggct ggccgatgga acgcacctgg
      541 tggacgggat gtcgtcgtgg tgggcggcga tccacggcta cgcccacccg gtgctcgacg
      601 ccgcagtgtg tgaccagcta aagcggatga gccacgtgat gttcgggggc ctgactcacg
      661 agcctgcggt ccggctcgcc cgacgcctgg tggagatcac tccggagccg ctacagcatg
      721 tgttccttgc cgactcgggc tcggtgtcgg tggaggtcgc gatcaaaatg tgcctgcagt
      781 actggcgctc gctgggccgc cccggcaagc gccggctgct cacctggcgg ggcggctacc
      841 acggcgatac cttcggcgcg atgagtctgt gcgatcccga cggcgggatg cactggctgt
      901 ggtcagacat gctggcccgg cagctgttcg tgccggcacc gcctgtcgcc ctggacccgg
      961 agtacgtgca gctgctggcc gacgccgtgg cccgccacgc ggacgagctg gccgcggtga
     1021 ttgtcgaacc agtcgtgcag ggtgctggcg gcatgcgctt ccacgacccg cgctatctgc
     1081 acgtgctgcg ggagatcacc ctggcgcacg acgtgctgct ggtcttcgac gagatcgcca
     1141 ccggattcgg ccgcaccgcg gcgctgttcg ccgccgatca tgccgggatc agccccgatg
     1201 tgatgtgcgt gggtaaggcg ctcaccggcg gttacctcac catggccgcc gtgttgtgca
     1261 ccacgcgggt cgccgagggg atctctggcg gcgaggtccc ggttcttgcc cacggcccga
     1321 ccttcatggc caacccattg gcggccgcgg tggcctcggc gtcgattgat ctgctgctcg
     1381 gtcaggactg gctgtcccag gtgcgacggc tcgaagcggg attgcgcgcg ggactggcgc
     1441 cggctgcgga gctgccagga gtggctgagg tccgggtgct gggcgcgatc ggagtggtac
     1501 agctggatca tgatgtcgac cttcctgccg ctaccgtcgc tgcggtgacg cagggtgtgt
     1561 ggctgcgccc gttccgtgat cttgtctaca ccatgccgcc ctacgtgacg ggtgaggatg
     1621 acctagcgca gatcaccagg ggagtgctcg ctgccgccgc tgcgggctga ggttgccgaa
     1681 tctgcttggc gcagtgcgtg gaagatctgc cggaaccacg ccagccagca ggcggtgtga
     1741 tgggcaccac gagcccgaag gagtgaacag agagtagttc aggctagcct tacctagatt
     1801 tcaacctcgg cctcgcacga tgagtggtga cggggaggaa tcaggttgtg acggtcgatg
     1861 acgtccgcct ttcccggggt ccggccttgt ggaggtatcg cagcgcggcg atgcaccgcg
     1921 ccgctggcgg accgcagttg accgctcgta caaccgcaga tccggaggcc gttgcatgcg
     1981 accccccatc accgtcgctg tcccgctgcc cgccccgcac cgtcgcgcat ggagcgcgct
     2041 gcgccacgac ctacccgctt ccctggtgct gttgttgatc gccataccgc tgtcgctggg
     2101 gatcgcgctc gcctcgggcg cgccggtgat ggccgggctc atcgcggcgg ccgtcggcgg
     2161 gatcgtggct ggattgctgg gcggttcgcg gctacaggtc agcggacccg cggctgggct
     2221 caccgtcgta gtggccgacc tcattgcgaa gtacggctgg ggcgtcatgt gcgcgatcac
     2281 cgcggccgca ggagtcctcc aagtcatctt cggagtcagc cgggtggccc gggccgccct
     2341 ggcgatctcc ccggccgtgg tgcacgcgat gctcgccggt atcgggatca ccatcaccct
     2401 gggccagctg cacgtgctgc tcggcggcgc ggcggaaaac aacgcgatca cgaacatcgc
     2461 cgaactgccc ggccagatca tggagatcca ctatccggcg gccctggtgg gcctcgccgt
     2521 gatcgcggtg gtattgctct ggccgtgggt gccccgcccc ctgctgcaca tcccggcgcc
     2581 gctggtggct gtggtcggta tgacggtgct cgcctcggta cttgcgctcc aagtcgagcg
     2641 ggtggctctg cccggttcgt tgctcgactc ggtgcgcctg cccgagctgc ccggcgacag
     2701 ctggggtggt gtgctcaccg gtgtgctcac tgtggcgctg atcgccagcg tggagagttt
     2761 gttatcggcg gtggcggtgg acaaactgtc caggggcggg ccgaccaact tcgatcggga
     2821 actcgtcggg cagggcaccg cgaacaccct gtccggattg ctcggtggct tgccggtgac
     2881 cggcgtgatc gtccgcagtt ccgcgaatgt cgcggctggc gcgcggacga gggcatcggc
     2941 ggtggtgcac ggtgtctggg tgatcttgtt cgcggtcctg ctcgtcgggc tgatcgagct
     3001 cataccgctg gcggtgctcg ctggcctgct ggtcgtcatc ggcctgcgcc tggtcaagct
     3061 cgcccacctt cgcaccgctc gccgtcaggg tgaactgacg atctacctga tcaccgtggc
     3121 cggtgtggtg ttgctgaacc tgctggaggg cgtgctcatc ggtctgggac tctcgctgct
     3181 gatggtgttg cgccgggtcg cccggtcgcg ggtgcacgtg cagcgggtgt caccgggatc
     3241 agatgacgcg ccggcctgct ggcgagtggt ggtcgaaggc accctgagct tcctgtccat
     3301 cccacggctg tcccgggtgc tggcgcaggt gccgcgaggc agccatgtcg tcgtggagat
     3361 gatcgtcgac ttcttggacc atgccgccta cgagtacctc gccgggtggc aacagcagca
     3421 cgaggcctcg ggtggcaccg tcgtcatcga cgagatcggg ccggccgggc gcaatggcga
     3481 gagcggcgat ggccccgccc gccgggtgtg gatgcccgct ctgccgcgcg ccttctctcc
     3541 atggtgggta tggcaggcca agcaccacga caacggtcac ggtgggctgc gatcgctgct
     3601 tgccggggtg cgggagtacc accaacgttc ggcggcccaa gcccggccgc acctgaccca
     3661 actggcggac cggcagcacc cgcgggccct gttcctcacc tgtgccgact cgagagtggt
     3721 gcccagtatg atcaccagta gcgggcctgg tgatctgttc acggtgcgca atatcggcaa
     3781 cctggtgccg ccgtcggagc tggactcgtc ggtagccgcg tcgctggagt acgcggtgaa
     3841 ccacctcggc gtgccgtcga tcctggtgtg tggacattcc agctgtgcag cgatgcacgg
     3901 cctactcgac ggcgcgaccg tcgacggttc actgggccgg tggctgcgct ggggcctgcc
     3961 gagcttacag gcgttgcgag ccggtcaccc ggtgggtgtc gcagctgcac aggaggggcg
     4021 cgcagaggtt gatcaactct cgatggtcaa tgtggcccgc caggtagagg tgatcgttga
     4081 gcacgctgcg gtgcgcgacg ctgtcgcggc aggaagggtg caggtatcgg gcctgttcct
     4141 ggatatccgc acggcccggc tgctgctgct cgaccgtgag gccggccgat tcgtgccggt
     4201 gcccgacgac tatctgcccg gcgtctatct gcctggaggc ctggccgctc ccgcggggta
     4261 gggcggagga gatcagtggc gcccgccggc ggggtcgtag gctcgctgct cgtgacggcg
     4321 attcctgagg tggctggatc tgctcacccg accgggtcct tgggctggtt ggacgatgcc
     4381 gctgcggttc gccgggttga cgggctgcgg cggatcctgc ggccgcgtcc ggtgttcgag
     4441 ccggtggtcg acctggcctc caatgattac ctgggtctgg ccagagatcc ccgggtggtt
     4501 cagggcgcgg tgcaggcggc ccgcgtctgg ggcgcgggct cgacggggtc ccgcctggtc
     4561 accggctcca ccgagttaca cgctcagctg gaggaggagc tagcggcatt ctgtggcgca
     4621 ccggcggcct tggtgttctc ctcgggttac accgccaacc tcggcgcggt gaccgcactg
     4681 tccggccccg gcgcgctggt ggtctctgac gccgccagcc acgcctcgct ggtggacgcc
     4741 tgccggttgt ctcgggcgcg gatcgttgtc accccgcacg gcgatgtctc ggctgtggag
     4801 ggtgcgctgg ctgcccgctc cgagcggcgt gcgctggtca tcaccgattc ggtggtcagt
     4861 gtgagcggtg agctcgcgcc actggggcag ctgcatgagg tgtgccggcg gcacggcgcg
     4921 gttctgctgg ccgatgaggc gcacggtctc ggcgtgcggg gacccggcgg ccggggatta
     4981 ctcgccgaac acggtct
//
LOCUS       DASVXZ010000711         5637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_260162, whole genome shotgun sequence.
ACCESSION   DASVXZ010000711 DASVXZ010000000
VERSION     DASVXZ010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5637
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260162"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VF788_15050"
     CDS             <1..228
                     /locus_tag="VF788_15050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEX8935476.1"
                     /translation="KHCESGDVVVRDCWLPDDLAPGDLVAVAGTGAYCYSMSSRYNML
                     PRPAVVAVREGTHRLLLRRETMADLLSLETS"
     gene            225..1541
                     /locus_tag="VF788_15055"
     CDS             225..1541
                     /locus_tag="VF788_15055"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEX8935477.1"
                     /translation="MSAEPIGVALLGCGTVGREVLRLLTEQSAELAARVGAAVRLVGV
                     AVRRPRRHPDVPAELLTTDAAELVSRDGVDVVVEVIGGIEPARSLLLSALRAGRGVVT
                     ANKALLAECGPELYSAADAAGADLYFEAAVAGAIPLLRPLRESLAGDRITRITGIVNG
                     TTNFILSAMDSSGAGYAETLEEASRLGYAEADPTADVDGYDAASKVAILASLAFHTRV
                     TSADVYREGIADVSAADFLAARELGRTVKLLAICERVVEDTGTESVSARVYPAMIPRS
                     HPLASVGGAYNAVFVEADAAGALMFYGQGAGGAPTASAVLGDLVAVARNLVAGGYGPR
                     ESAYADLPIRPMEDTSTSYHISLEVLDRPGVLAQVAQIFAEHEVSIMAVRQTGRAPGD
                     VPAGANLVIVTHAAPDVALRSTVDKLAGLDVVRDVISVMRVEGEVT"
     gene            1544..2623
                     /gene="thrC"
                     /locus_tag="VF788_15060"
     CDS             1544..2623
                     /gene="thrC"
                     /locus_tag="VF788_15060"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020670661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX8935478.1"
                     /translation="MQAAAGRSWPGVIEAYPDRIRVWPGCQVVTLQEGGTPLLPAPTL
                     SQRTGCDVLLKVEGANPTGSFKDRGMTMAVTEALARGAQAVLCASTGNTAASAAAYAA
                     RAGIPSAVLVPRGKIALGKLAQATAYGARILAVDGNFDDCLELARKTAADYPVTALVN
                     SVNPVRLQGQKSAAFEICDVLGQAPDVHCLPVGNAGNITAYWMGYTEYHIDGVVPGRP
                     RMFGFQAAGAAPLVHGAPVLEPDTIATAIRVGSPASWDGAMRARDESSGLFEAITDEQ
                     ILAAYRLLAAQEGVFVEPSSATAVAGLLRVAEDGRLPHGSLVVCTVTGHGLKDPDTAL
                     HGIPTPNPIPVDPAAVAAALALPRP"
     gene            2727..3599
                     /gene="thrB"
                     /locus_tag="VF788_15065"
     CDS             2727..3599
                     /gene="thrB"
                     /locus_tag="VF788_15065"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016336873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEX8935479.1"
                     /translation="MRSVRVRVPASTANLGPGFDALGMALALYDEIEATPAASGLRIE
                     VQGEGAGHVPTDEQNLVARALRAGCARCGYQPDGVVLRCHNRIPHGRGLGSSAAAAVA
                     GVLAGYALAGMEPDESVLDVAAGLDGHADNVGASLLGGLVVSWNDGKTFRAARLEPHP
                     DLTPVLLVPEQTSATKVTRGLLPTMVPHLDAAFTAGRAALLVHALTSAPELLLAATED
                     RLHQPYRRQAYPTTGRLVEALRAAGVPAAVSGAGPAVLTLPVSGELPAEVSISGFARY
                     RLDVARKGAVFERD"
     gene            3953..>5637
                     /gene="rho"
                     /locus_tag="VF788_15070"
     CDS             3953..>5637
                     /gene="rho"
                     /locus_tag="VF788_15070"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020670663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEX8935480.1"
                     /translation="MSDINVLSSEVAAAASSDQPPADEAGTAVPPSDNGTATRRRGGL
                     SGMVMAELRQLAGQLGVPSIAGLRKNELITAIKERQGTVPGQRRAVAEQLPLEGAQTP
                     SVPADARAGGRQEAPAEAPAGAPVAEQPRTAVVEPVAPAEQGQSQPDQTQPDRAQRDR
                     DQQDGDADGADRSRNRRRRPVRGSSDAPRSPNDQGQTNQGQINQNQGDQAPAGQSSSQ
                     SAPGANGSRDDDDDPGRRRGRRFRDRNRRNRNDRTSERTSDRRDGGEVEVREDDVLLP
                     VAGILDVLDNYAFVRTSGYLSGPNDVYVSLSLVRKYGLRRGDAITGAVRQPREGEQQR
                     QKFNPLVRVESINGLDVEQARQRPEFTKLTPLYPNERLRLETEQNVMTTRVIDLIMPI
                     GKGQRALIVSPPKAGKTMILQALANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGE
                     VIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRI
                     LSGGVDSTALYPPKRFLGAARNIEDGGSLTIIATALVEMGHDVVVLLDSITRLG"
BASE COUNT          863 a         1889 c         2000 g          885 t
ORIGIN      
        1 aagcattgcg agtccggcga tgtggtggtg cgggactgct ggctgcctga tgacctcgcc
       61 cctggggacc tggtagcggt tgccggcacc ggcgcgtact gctactcgat gtccagccgg
      121 tacaacatgc tgccacgacc ggcggtcgtc gccgtgcgcg agggcaccca ccggctgctg
      181 ctccgtcggg aaacgatggc cgacctgctg tccctggaga cgtcgtgagc gccgaaccca
      241 tcggtgtggc gctactgggg tgtggcaccg tcggccggga ggtgttgcgg ctgctcaccg
      301 agcagtccgc cgagcttgcc gcgcgggtcg gcgccgcggt gcggctggtc ggggtggcgg
      361 tgcggcgccc gcgccggcat cccgacgtgc ccgccgagct gcttaccacc gacgctgccg
      421 agctggtcag ccgggacggc gtggacgtcg tggtggaggt gatcgggggc attgaaccag
      481 cccggtcgtt gctgctctcg gcgctgcgcg ccggccgcgg cgtggtcacc gccaataagg
      541 cgctgctcgc cgagtgcggg cccgagctgt acagcgctgc cgatgccgct ggtgccgacc
      601 tgtacttcga ggcggccgtg gccggggcga tcccgctgct gcgcccgctg cgggagtcgc
      661 tggctgggga ccggatcacc cgcatcaccg gcatcgtcaa cggcaccacc aatttcattc
      721 tctccgcgat ggattcctct ggcgctggct acgccgagac cctggaggaa gccagccggc
      781 tgggctacgc ggaagccgac ccgaccgccg acgtggacgg ctacgacgcc gcctccaagg
      841 tggcgatcct ggcctcgttg gctttccaca ccagggtgac cagcgccgat gtctaccgtg
      901 agggcatcgc agacgtctcc gcagccgact tccttgcggc ccgggagctc ggtcgtacgg
      961 tgaagctgct ggcgatctgt gagcgcgtcg tcgaggacac cggcaccgag tcggtgtcgg
     1021 ccagggtgta cccggcgatg atccctcgct ctcacccgct cgcctcggtc ggtggggcct
     1081 acaacgcagt attcgtcgag gcggatgctg ccggcgcgct gatgttctac ggtcagggcg
     1141 ccggtggcgc gccgactgcc agtgcagtgc tcggcgatct tgttgcggtt gcccgcaacc
     1201 tggtcgcggg cggctacgga ccccgggagt cggcctacgc cgacctgccg atccgcccga
     1261 tggaggacac atcgaccagt tatcacatca gccttgaggt gctcgaccgt cctggagtgc
     1321 tggcgcaggt ggcgcagatc ttcgccgagc acgaggtttc catcatggcg gtgcgccaga
     1381 ctggacgcgc ccccggcgat gtgccggccg gcgcgaacct ggtgatcgtc acgcacgccg
     1441 cgccggacgt ggcgctgcgc tctaccgtgg acaagctcgc cggattggat gtggtccgcg
     1501 acgtgatcag cgtgatgagg gtggagggtg aggtgacgtg aagctgcagg cggcggcggg
     1561 tcgctcctgg ccgggagtga tcgaggccta cccggaccga atccgggtct ggccgggctg
     1621 ccaggtggtg accctgcagg agggcggcac cccgctgctg ccggcgccca cgttgtccca
     1681 gcgcacgggc tgcgacgtgc tgcttaaggt cgaaggcgcc aaccccaccg gctccttcaa
     1741 ggaccgcggg atgaccatgg cggtgaccga ggcactggcc cggggcgcgc aggcggtgtt
     1801 gtgcgcttcc accggcaaca ccgccgcctc ggcggccgcc tacgccgcac gggccgggat
     1861 tcccagcgcg gtgctggtac cccgcggcaa gatcgcgctg ggcaaactgg cgcaggcgac
     1921 cgcctacggt gcccggatcc tggcggtgga cggcaacttc gacgactgcc tggagctggc
     1981 ccgcaagacc gccgctgact acccggtgac cgcgctggtg aactcggtga acccggtgcg
     2041 gctgcaggga cagaagagcg ccgcgttcga gatttgtgac gtgctcgggc aggccccgga
     2101 cgtgcactgc ctgccagttg gcaatgccgg caatatcacc gcttactgga tgggttacac
     2161 ggagtaccac atcgacgggg tggtgccggg ccgtccgcgg atgttcggct tccaggccgc
     2221 cggtgccgcg ccgctggtgc acggtgcgcc ggtgctggag ccggacacga tcgccaccgc
     2281 catccgggtc ggcagtcccg cgtcttggga cggtgcgatg cgcgcgcgtg acgagtcgag
     2341 cggtctgttc gaagccatca ccgacgagca gattctcgct gcttaccggc tgctggccgc
     2401 gcaggaaggt gtgttcgtcg aaccatcctc ggccaccgcg gtggcgggtc tgctgcgtgt
     2461 cgccgaggac gggcgcctac cgcacggctc cctggtggtc tgcaccgtga ccggccacgg
     2521 cctcaaagac cccgacaccg ccctccacgg cattcccacc cccaacccca tcccggtaga
     2581 tcccgccgcc gtagccgccg ccctggccct gccccggccg tgacctgccc tcctgtcgcc
     2641 gagctcgaca tcagggctgt ccccgcgggg cccaacagat ctcctgccga actcggcgac
     2701 acggcaccgc cgctgggggc gctgccgtga ggtctgtgcg ggtgcgggtc ccggcatcga
     2761 cggcgaatct aggcccgggc tttgatgcgc tcgggatggc gctggcgctg tatgacgaga
     2821 tcgaggcgac gccagcagcg tcaggtctgc gcatcgaggt gcagggtgag ggcgcggggc
     2881 acgtgcccac cgacgaacag aacctggtgg cgcgcgcgct gcgggcggga tgcgcacgat
     2941 gcggttacca gcctgacggt gtagtactgc gctgccacaa ccgcatcccg cacggccggg
     3001 gactgggctc atccgcggcc gccgcggtag ccggcgtgct ggccggttac gcgctcgcgg
     3061 gaatggaacc agacgaatcg gtgttggacg tggcagctgg gttggatggg catgccgaca
     3121 acgtgggcgc gagcctgttg ggcggtttag tggtctcttg gaatgacggg aagacctttc
     3181 gagcggcccg gctggagcca catccggact taacgcctgt gttgttggtg ccggagcaga
     3241 catcggccac caaggtcacc cgcggactat tacccacaat ggtgccacat ctcgacgcgg
     3301 cattcaccgc tgggcgggcc gcgctgctgg tgcatgcatt gaccagcgct ccggagctgc
     3361 tgctggcggc cacagaagat cggctgcacc agccctaccg gcggcaggcg tatccgacga
     3421 ccgggcggct ggtggaggcc ttacgcgcgg caggggtgcc cgctgcggta tcgggtgccg
     3481 gaccggcggt gctgacgttg ccggtcagcg gcgagctacc ggcggaggtg tcgatatctg
     3541 gcttcgcccg atatcgactc gacgtggccc gcaagggggc cgtgttcgag cgggattaag
     3601 caatgtaggg ggcggatcat ctatctgagc gacctatcca cgggcccctt gttgcccctg
     3661 ccgcggtgga ccgataggct cagtgtcgtt cagacaccgt gtgcacgggc gccggtgccg
     3721 tgttcggggc ctctcactcg gacaatttct cccgccctcc ggttgacgtg gtagcgggaa
     3781 ggctggcacc cagacccttg ccacagttgg acatgtcccg tgccggtcgg cttgaccaca
     3841 gatgtcgtgg tcggcgggcc caccgtaccg ggacccaggc gccgccggca taccgccggc
     3901 cggcgaacag gctggcctga gccgcgtctc gggccggtta ggaaggacct gcgtgagcga
     3961 tatcaacgtg ttgagcagcg aggttgctgc tgcggcatct tcggaccagc ccccagccga
     4021 cgaagctggg actgctgtgc cgccttcgga caacgggacg gcgacgcgtc gccgtggcgg
     4081 gctgtccgga atggtgatgg ctgaactgcg ccagctggcc ggtcagctgg gcgtgcccag
     4141 catcgccggt ttgcgcaaga acgagctgat caccgcgatc aaggagcggc agggcaccgt
     4201 ccccggccag cgacgtgccg tcgctgagca gctcccgctc gagggtgccc aaacaccgag
     4261 cgtcccggca gacgcccggg ctggaggaag gcaagaggcc ccagcggagg ccccggccgg
     4321 agccccggta gccgaacagc cgcgcaccgc ggttgtcgag ccagtggccc cagccgagca
     4381 aggccagagc caaccggatc agacccaacc ggaccgcgct cagcgcgacc gcgatcagca
     4441 ggatggggac gcagacggtg cggaccggtc ccgcaatcgg cggcggcgtc cggtccgcgg
     4501 gagcagtgac gcaccccgct ccccgaatga tcagggccag accaatcagg gccagatcaa
     4561 tcaaaaccag ggtgaccagg caccggctgg ccagagcagc agtcagagcg cacctggcgc
     4621 gaacgggtcg cgtgatgacg acgacgaccc tggccgtcgg cgtggccggc gcttccggga
     4681 ccgcaaccgc cgcaaccgga atgatcgcac cagcgagcgc accagcgatc gccgcgacgg
     4741 tggcgaggtg gaggtccgcg aggacgacgt gctgctgccc gtcgcgggga ttctcgacgt
     4801 acttgataac tatgccttcg ttcggacgtc gggttatcta tccgggccca acgacgtcta
     4861 tgtctccctg tcgctggtcc gcaaatacgg gctgcgccga ggtgacgcga tcaccggagc
     4921 agtgcgtcag ccgcgcgaag gtgagcagca gcgccagaag ttcaacccgc tggtgcgggt
     4981 ggagagcatc aacggcctcg acgtcgagca ggcccggcag cgtcctgagt tcaccaagct
     5041 cactccgctc tatcccaatg agcggttgcg cctggagact gagcagaacg tgatgaccac
     5101 ccgggtgatc gatctgatca tgccgatcgg gaagggtcag cgcgcgctga tcgtctcgcc
     5161 gcccaaggcg ggtaagacga tgatcctgca ggcgctcgcc aatgcgatca ccaccaacaa
     5221 cccggaatgt cacctcatgg tcgtgctcgt cgacgagcgg cctgaagagg tcaccgatat
     5281 gcagcgctcg gtgaagggtg aggtcatcgc ctcgaccttc gaccgcccgc cctcagacca
     5341 caccacgatc tctgagctgg ccatcgagcg ggccaagcgg ctggtggaga tgggtcacga
     5401 cgtggtcgtg ctgctggact cgatcacccg gctgggccgt gcctacaacc tggcggcccc
     5461 ggcatccggc cggatcctct ccggaggcgt ggactccacc gcgctctacc cgccgaagcg
     5521 gttcctgggc gctgcccgca acatcgagga tggcggctcg ctcaccatca ttgcgacggc
     5581 cctggtcgag atgggccacg acgtcgtcgt cctgctcgac tcgatcaccc ggctggg
//
LOCUS       DASVXZ010000712         1707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_170047, whole genome shotgun sequence.
ACCESSION   DASVXZ010000712 DASVXZ010000000
VERSION     DASVXZ010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170047"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(183..1499)
                     /locus_tag="VF788_15075"
     CDS             complement(183..1499)
                     /locus_tag="VF788_15075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxide hydrolase"
                     /protein_id="HEX8935481.1"
                     /translation="MAAIPSSPTRRSLLASAAAGAVSLLPMHFVAGRALEAPNVPAST
                     TKADVIVPFRVDFPGEDLADLRRRLTSTRWPTKELVEDRSQGVQLATLRALARYWSTE
                     YDWRKCEARLNALPQFTTVIDGVKIHFIHVKSRHENALPLIMTHGWPGSVIELLDTVG
                     PLTDPSKYGGTPDDAFHLVLPSLPGYGFSGEPTELGWDSARIARAWAVLMDRLGYTRY
                     VAQGGDVGAAVTDAMGRQAPKGLLGIHVNLLVGVAAMSDKLPAESEKERAAQKAAATF
                     RASGSGYFLEQSTRPQTIGYSLLDSPLGLASWMLDHDTDSYYKISRAFVEGKPAGNLT
                     RDSILDNITLYWLTGTGASAARWYWEAGQAAAQAAGKSPPAVAVPVGFSTFPGELFAA
                     PRSWVEIMYPGLAYFNEVERGGHFAAWEEPKLFSDEVRAAFRSLRK"
BASE COUNT          311 a          527 c          556 g          313 t
ORIGIN      
        1 ttcggagtgc agagctgccc cgtcgtcgct agccgagtgc agaggtaggg gcggccgttg
       61 cggttttagg ggcccagtcg gctccgccaa gctcccccgt gtggatcgac gctccccgcg
      121 gagggcgtgc gactgacgaa catggcgcga agatgatcgt cggcgttgag cctctgctcc
      181 cgtcatttgc gcaatgatct gaaggctgcg cgtacctcat ctgaaaagag cttcggctcc
      241 tcccaggcgg cgaaatgtcc gccacgttcg acctcgttga agtaggcgag accggggtac
      301 atgatctcga cccaacttcg gggcgcagca aagagttcgc ccgggaacgt cgaaaatccg
      361 acgggaacgg cgaccgcagg aggagacttg ccggccgcct gggctgcggc ctgtccggcc
      421 tcccagtacc accgtgcggc cgaggcccca gtgcccgtca gccagtacag cgtaatgttg
      481 tcgaggatgc tgtcccgggt gagattgcct gcgggcttac cctccacgaa cgctcgggag
      541 atcttgtagt agctgtccgt gtcatggtcg agcatccagc tcgcgagccc gaggggcgaa
      601 tccagcaggg agtagccgat tgtctgtggc cgcgtggact gctccaggaa gtagccagac
      661 ccactcgccc taaaggtcgc ggccgccttt tgcgctgcgc gttccttctc ggattctgcg
      721 ggcagcttgt cggacattgc tgccacgcca acgagtaggt tcacgtgaat gccgagaagt
      781 cccttgggtg cctggcgccc catcgcatcc gttactgccg ctcctacatc cccaccctgg
      841 gcgacgtagc gcgtgtagcc gaggcgatcc atcagcaccg cccacgcacg cgcgatgcgc
      901 gcgctgtccc agccgagttc ggtcggctca cccgaaaagc cgtagccagg caaggacggc
      961 agcaccaggt ggaacgcatc gtcgggagtg ccaccatact tgctggggtc ggttagggga
     1021 ccgacggtat cgaggagctc gatcaccgag ccaggccagc cgtgggtcat gatcagtggc
     1081 agcgcgttct catggcggga cttgacgtgg atgaaatgga tcttcacgcc gtcgatcacg
     1141 gtcgtgaact gtggcagcgc gttcagccgt gcctcgcact tgcgccagtc gtactcagtc
     1201 gaccagtagc gggcgagcgc ccgaagcgtt gccagctgca caccctgcga ccgatcctca
     1261 acgagctctt tggtgggcca gcgcgtgcta gtgaggcgcc ggcggagatc agcgaggtct
     1321 tcccccggga aatcgacacg gaagggaaca attacgtcgg ctttggtcgt acttgcgggg
     1381 acgttcgggg cttcgagcgc gcgtccggcg acgaaatgca ttggaagcaa gctgacagca
     1441 ccagcggctg ctgaagcgag aaggctgcgc cgggtgggtg aagaggggat tgcggccatc
     1501 gtcggcctcc ttgtttacaa gcgcctacat tagtgaactg cgatgcgtcg gtcagcttct
     1561 aactgtaaaa aagattgcag ctgtgcctcg accggcggtg ccctgtacag ccgactatgc
     1621 gcgaatgcct cctgccgtat gacgccgttc aagagagcag cacgccggag gacgactcat
     1681 cgccttatgc caacgctgcg cctctac
//
LOCUS       DASVXZ010000713         3479 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1603734, whole genome shotgun sequence.
ACCESSION   DASVXZ010000713 DASVXZ010000000
VERSION     DASVXZ010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1603734"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..381)
                     /locus_tag="VF788_15080"
                     /pseudo
     CDS             complement(1..381)
                     /locus_tag="VF788_15080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010242803.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            460..705
                     /locus_tag="VF788_15085"
     CDS             460..705
                     /locus_tag="VF788_15085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935482.1"
                     /translation="MFGRLLAAKAFKRWNGVLLLVVELPDGSPGTIRADATDVLGPAP
                     EAGPGGVLDPAGLVELHRLVRQVLASQDVSVGSQKRK"
     gene            949..1140
                     /locus_tag="VF788_15090"
     CDS             949..1140
                     /locus_tag="VF788_15090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935483.1"
                     /translation="MSGESMAGVLAPALLLSVEKINASHRGRDAYVYVRQSTPSQMIH
                     HTESLARQYELRERAVALG"
     gene            1159..3216
                     /locus_tag="VF788_15095"
     CDS             1159..3216
                     /locus_tag="VF788_15095"
                     /inference="COORDINATES: protein motif:HMM:NF019149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEX8935484.1"
                     /translation="MIDADLGRSGAQSAGRLGFKELVADVGLGKVGIVLGIEVSRLAR
                     NNADWYQLLDLCALTDTLIADADGVYHPANFNDRLVLGLKGTMSEAELHLIRSRLTAG
                     LKHKAARGELRQGLPVGLDYDEDDKVVITADEAVREVITTVFRRFDELGSARQVLISL
                     REDHLLLPRRRNGSTRIAWADASYPAVHDLLTNPAYAGAFVFGRTRTEKRVDPDTGQV
                     LSRDRVVPRQQWEVLIPDHHPGFITWEKYEANTARLRSNWRGPRDQPGGAVREGRALL
                     QGLLRCARCGRIMQTGYSGTKGNCPRYLCARAKQLYAGEHVCQSIGGVRLENTILEQL
                     FAVLAPAALSATVQALAEADEHHRRNLAVFELAVERARFEAQRALRQFNNVEPENRLV
                     ARTLEKTLEDKLAAVRAAESDLSAQRARRPVALTAEELAWITSAGADVRAVFDAPTTT
                     LRERKQLIRAVISEIGIAIRAQQRIADLRIVWQGGAITELSMPMNTAGGHLRATDEET
                     LTLVRRLAQHYDDRTIAVILAKQKRRTATGLTWTRPRVTALRANHAIPAYQPPPAAVR
                     PDCHDSVVVTISTAEKLLGVSKVTLYRWIKDGFITGEQITPGAPWRIRIDQDLRDRIR
                     PDVPDGWLGLDEAAKTLGVARQTVLHKVQRGELAAVHVNRGRRKGLRIQVERDQPGLF
                     DTP"
     gene            complement(3235..>3479)
                     /locus_tag="VF788_15100"
     CDS             complement(3235..>3479)
                     /locus_tag="VF788_15100"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8935485.1"
                     /translation="EQLSYWGLLAELLLAECDDRDRRRSARRIKAAGFPREKRLDDFD
                     FEANPSINPATIHTLARCDWVRKGEPLCLIGDTEAG"
BASE COUNT          628 a         1155 c         1109 g          587 t
ORIGIN      
        1 gtcggtgccg gtttccagga tatttcccgc gaaggttaaa cggtcgacga ttgccgcgca
       61 gagcctggga tcggtgaacg tctttgtcca gccactgaag ctttcgttac ttgcaatggc
      121 gacgcttgcg gtttcttctc gctcggtaag gacttggaac agcatctccg ccccacgccg
      181 gtctaattcc atataaccta actcgtcaat gcacaggaga tcgacgcgac catagcgggc
      241 gatggtgcgg gccagctgac gctcgtcggc ggcttcgaca agctcgttca ccagcttcgt
      301 cgcaagacta tatctgaccc ggagaccttg ttgggcggcc gccgcgccca acgcgatgag
      361 tagatgtgtc ttcccggtgc cgggagtgag ggcgacagac tgcaacatct tcgtgcggtt
      421 ttgccgtgtg aggtcagagt cgttgccggg acgcatccgt tgttcgggcg gttgctcgcg
      481 gcgaaggcgt tcaagcgatg gaacggcgta ctgctgctcg tggtggagct gccggatggt
      541 tcgccgggga cgattcgggc tgacgcgacc gacgtgctgg ggcctgcgcc ggaggcgggc
      601 ccgggtggtg tgttggaccc ggctggtttg gttgagctgc accggttagt gcgccaggtc
      661 ttggcgtcac aggacgtgag cgttgggtca cagaaacgca agtaggttcg ccccgtccct
      721 gatcgcgctg acgactccgg aagaggcgaa cccacttgcg tgccatgaga gtagtgcccc
      781 catgccaact tgccctcggg ctggagccaa cacccaccca ggaaggtcag tggccgggtc
      841 ttcccgagga cacccgagga caggtccagg ggctgttggt caggctgatc gttcggggcg
      901 ttctgaccga aagccaggac gaccccacca gcaccggggt ggtgaacggt gagcggtgag
      961 tcgatggctg gtgtcttggc tccagccctg ttgctgtcgg tggagaagat caatgcgtcc
     1021 catcgcggcc gggacgcata tgtctatgtc cgccagtcca cgccgtcgca gatgatccac
     1081 cacaccgagt cgctagctcg gcagtatgag ctgcgcgaac gcgcggtcgc gttgggttga
     1141 ccggaacacc atgttggggt gatcgacgcg gacctgggcc gttccggtgc ccagagcgcg
     1201 ggccggctgg gttttaagga actggtcgcc gatgtcgggt tgggcaaggt cgggatcgtg
     1261 ctgggcatcg aggtctctcg cctggcccgc aataacgccg attggtatca gctgctggat
     1321 ctgtgcgcgt tgaccgacac tctgatcgcc gacgccgacg gcgtgtatca ccccgctaac
     1381 ttcaacgacc ggctggtctt ggggttgaag ggcacgatgt ccgaggccga gctgcacctg
     1441 atccgctcgc ggctgaccgc cggactcaag cacaaggctg cccgaggcga actgcgccaa
     1501 ggcttgccgg tcggactgga ctatgacgag gacgacaagg tcgtcatcac cgccgacgag
     1561 gcggtgcggg aagtgatcac caccgtcttc cgccgcttcg acgagctcgg ctcggcccgc
     1621 caggtgctga ttagcctgcg cgaggaccac ctgttgctgc cccgccgccg caacggctcc
     1681 actcgcatcg cctgggccga tgcgagttat ccggcggtgc atgacctgct gaccaacccg
     1741 gcctatgccg gggccttcgt cttcggccgc acgcgcaccg aaaagcgtgt cgaccccgac
     1801 accggacagg tgctgtcccg agaccgggtc gtgccccgcc aacaatggga ggtactgatc
     1861 cccgaccacc accccggctt cattacctgg gagaagtacg aggccaacac cgccaggctg
     1921 cgcagcaact ggcgcggtcc gcgcgatcaa cccggcggcg cagtccgcga agggcgggcg
     1981 ttgctgcaag gcctgctgcg atgcgcccgc tgcggacgaa tcatgcagac cggatactcc
     2041 ggcaccaagg gcaactgccc gcgctatctg tgcgcccgcg ccaagcagtt gtatgccggc
     2101 gagcacgtct gccaaagcat cggcggtgtc cggttggaga acaccatcct cgagcagctg
     2161 ttcgcggtgt tggcgccggc cgcgctctcg gccaccgtcc aggcgctggc cgaggccgac
     2221 gagcaccacc ggcgcaacct cgcggtcttc gagctggccg tcgagcgcgc ccgttttgag
     2281 gcgcagcggg cacttcgcca gttcaacaac gtcgaaccgg aaaaccggct cgtcgcccgc
     2341 accctagaaa agacactgga ggacaaactc gcggcggttc gcgcggcgga gtccgacctg
     2401 agcgctcagc gggcccgccg cccggtcgct ctgaccgccg aggagcttgc ctggatcacc
     2461 agcgccggcg ccgacgttcg cgctgtcttc gacgcgccca ccaccacgct gcgcgagcgc
     2521 aaacaactca tccgcgcggt gatctccgag atcggtattg ccatccgcgc ccaacaacga
     2581 atcgccgacc tgcgaatcgt gtggcaaggc ggcgcaatca ctgaactgtc catgccaatg
     2641 aacaccgccg gcgggcacct ccgcgcgacc gacgaggaaa cactcaccct agtccgccgg
     2701 ctggcccagc actacgacga ccgcaccatc gcggtaatcc tggccaaaca gaagcgacgc
     2761 accgcaaccg gcctgacctg gacccgaccc cgggtgaccg ccctgcgagc caaccacgcc
     2821 attcccgcct accaaccgcc gccagccgct gtcagacccg actgccacga ttccgtcgtg
     2881 gtcaccatct ccaccgccga gaaactcctc ggcgtcagca aggtcaccct ctaccggtgg
     2941 atcaaagacg gcttcatcac gggcgagcag atcaccccag gcgctccctg gcgtatccgc
     3001 atcgaccagg atctccgcga ccggattcgt cccgacgtcc cagatggatg gctcggcctc
     3061 gacgaggcag ccaagaccct cggagtggcc cgacaaacgg tgttgcacaa ggtccaacgc
     3121 ggtgaactcg ccgctgtcca cgtcaaccgc ggacgccgca aagggctacg tatccaggtc
     3181 gaacgcgacc agcctggact gtttgacaca ccctgacagg aggaatgcgc agtgctaacc
     3241 agcctcggtg tccccgatca aacataacgg ttcacccttg cggacccaat cacaacgagc
     3301 gagggtgtga atggtggctg ggttgatcga tgggttggcc tcgaaatcga aatcgtccaa
     3361 ccgtttttcg cggggaaagc cggcggcctt gatccgccgc gccgagcgtc ggcggtcgcg
     3421 gtcgtcgcac tcggccagca gcagctcggc taggagaccc caatagctca gctgctcgc
//
LOCUS       DASVXZ010000714         1632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_439374, whole genome shotgun sequence.
ACCESSION   DASVXZ010000714 DASVXZ010000000
VERSION     DASVXZ010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439374"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /locus_tag="VF788_15105"
     CDS             complement(<1..267)
                     /locus_tag="VF788_15105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935486.1"
                     /translation="MDKDHVPGNAERSMAPDRETQARAGEAELRLALVCYGGVSLAVY
                     MHGVTKELHKLVVAARRFDELADVDASVAFPDGEPGSDTEHVYFQ"
     gene            complement(518..607)
                     /locus_tag="VF788_15110"
     tRNA            complement(518..607)
                     /locus_tag="VF788_15110"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(571..573),aa:Ser,seq:gga)
     gene            744..838
                     /gene="ffs"
                     /locus_tag="VF788_15115"
     ncRNA           744..838
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VF788_15115"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            884..1144
                     /locus_tag="VF788_15120"
     CDS             884..1144
                     /locus_tag="VF788_15120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935487.1"
                     /translation="MSQEGAKGDVDALRQELEQLRERMAVIKKEAAADVDEKWGSPFR
                     TPEVFDLKVKARLSSNDEYRTLQGRVQETENKLAADSDAAGA"
     gene            1234..>1632
                     /locus_tag="VF788_15125"
     CDS             1234..>1632
                     /locus_tag="VF788_15125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-interacting protein"
                     /protein_id="HEX8935488.1"
                     /translation="MPSQDSSRRRVDPSAAMVASVQQLTPRMTRVRLAGDGLAGLVAV
                     PGQTLKIYVPDLASGQPVSRDYTVRDYHSAQPSLDIDFVLHGEGPAANWARRARPGET
                     LEFIGPSGRYRPDPGADWHLFAGDETALPAI"
BASE COUNT          283 a          515 c          551 g          283 t
ORIGIN      
        1 ctgaaagtag acgtgctcgg tgtcgctccc cggctctcca tccggaaagg ccacgctggc
       61 gtcaacgtcg gccaactcgt cgaatcggcg cgcggcgacg accagcttgt gcagctcctt
      121 ggttacgccg tgcatgtaga ccgccaggga gacgccgccg tagcagacga gggccaggcg
      181 cagctccgcc tcgccggcgc gcgcctgcgt ctcccggtct ggcgccatgg atcgctccgc
      241 gttccccggt acgtgatcct tgtccataca gcgttctccc gcggcatccg gatcatggag
      301 agtagtactt caacgcagag atgcggaatt catttaccgt gatcactgag ctccgtaccg
      361 gcccgtgttg ctgcatacca acttgagctg gtcgtccgcg tcaccccgcg ccagtggacg
      421 ctcgcgcgct ttcagccaaa gcagggatcg ccaagtcgtg gactaggcgc cctggatgtc
      481 accgccgatc atggtgaccg gcgcttgcgc tggtggatgg cggaggatgc gggatttgaa
      541 cccgcgaggg ctttaacacc caacacgatt tccaatcgtg cgccataggc cactaggcga
      601 atcctccgct ggcgaggtta ccgccagtgc cgctgccagc caaagcggct ggcagcggca
      661 ctcgatggca gcgtgatcgg gctggcgcga tcggatcgct gagggcgtcg tgccttgcgg
      721 cgggggtaac ccctagactg agccgtggac cccgcgcggc gtccatcttg cgaactcccc
      781 cagggtcgga aggcagcaag ggtcagcagg ctctggcggg tgcgcggggt ccccttatgc
      841 ggcggcggcg ctcgtagctc aaggggaagg cggggaccgt aacgtgagcc aggagggtgc
      901 taagggcgac gtcgatgccc tgcggcagga gctggagcag ttgcgcgagc ggatggctgt
      961 gatcaagaaa gaggctgccg ctgatgtcga cgagaagtgg ggatcaccgt tccgaacccc
     1021 agaggtgttc gacctcaagg tcaaagcgag actgtcgagt aacgacgagt accgcacgct
     1081 gcagggccgt gtccaggaga ccgagaacaa gctcgccgcc gactcggacg ctgccggagc
     1141 ctgactcacc gacgtaaagt cgccttcttg cccactcatt ttggactcga cgtgaccgaa
     1201 tcgggcatgg tagcccgtcg aggacggagg tcgatgccgt ctcaggactc ctcccgcagg
     1261 cgcgtcgacc cgagcgccgc aatggtggcg tcggtgcagc aacttactcc ccggatgacg
     1321 cgagttcggc ttgctgggga cggtctggcc ggcttggttg cggtccccgg acagacgctc
     1381 aagatctatg ttccagatct ggccagcggg cagccggtgt cccgcgatta cacagtgcgc
     1441 gattaccatt ctgcgcaacc gagcctggac atcgatttcg tcctgcacgg cgagggccca
     1501 gcagccaatt gggctcggcg ggcgcggccc ggtgagacac tggaattcat cggtccgagc
     1561 ggtcgttacc ggccggatcc tggcgctgac tggcacctgt tcgccgggga cgagaccgcg
     1621 ctgccggcga tc
//
LOCUS       DASVXZ010000715         3900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1025946, whole genome shotgun sequence.
ACCESSION   DASVXZ010000715 DASVXZ010000000
VERSION     DASVXZ010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3900
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1025946"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1034
                     /locus_tag="VF788_15130"
     CDS             <1..1034
                     /locus_tag="VF788_15130"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8935489.1"
                     /translation="QAERFAQERRAAGVVSWSCPRSVALPLEYLRQLGAAPPPAPACP
                     VGPLEELLADYGRYLSIERGLCDHTVLDAYVPAAHLFLSDLGGSNGLDLARLAAADVS
                     SFLARECPKRSVSGARDLVCALRSLLRYLHLAGLITSPLVWSVPSMADLRDRTLPRGL
                     EPTAVRQLLASCDRRKLVGRRDFAILLLLARLGLRVGEVAAITLDDIDWRAGMLLVHG
                     KGTREDTLPLPTDVGEAIVSYLRRRPRCECRALFLRVTAPRQGLNRCTVAWVVRAACD
                     RAGLPRVGAHRLRHTAATQMLQAGASLPEIGQVLRHREQKTTAIYAKVDHVALRALAR
                     PWPTPAGVS"
     gene            1031..1957
                     /locus_tag="VF788_15135"
     CDS             1031..1957
                     /locus_tag="VF788_15135"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8935490.1"
                     /translation="MSALRAALDDYLRIRRRLGFVMPQDGRMLEGFVEFLDRAGAQRI
                     TTELALAWARLPVDVHPFTWRQRLTVARGFARYVATVDPASEVPATDLLPGRRPRIAP
                     YVYSEQEIAALMGAARQLRPALRAARHETLIGLLAVTGCRPGEALGLDRADVDLDNGV
                     VHVRAGKNNKQRQVPLHPSTISALRAYAGRRDARFPTPSTPAFFLSARGRRMGREELN
                     ATFIMLVRQSGLEGRGSRARPRPHDLRHAFAVHTLLDWYQAGEDVDRRMPLLSTYLGH
                     VDPASTYWYLEAVPELLELVGQRLQRLPGVVS"
     gene            1954..2943
                     /locus_tag="VF788_15140"
     CDS             1954..2943
                     /locus_tag="VF788_15140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8935491.1"
                     /translation="MSALAPALQAFFTDRLITQRGSSPRTIAAYRDTFTLLLRFAHDQ
                     TGKQPFELDIDDLNAPLIGAFLTHLERDRGNTARTRNARLGAVHSFYRFAALEHPEHA
                     HTIARVMAIPTKRHERSTVCYLDLTEITALLAVPDRGTWLGRRDRALLALMIQTGVRV
                     SELVGLRIRDVHLGTGHHIQVLGKGRKKRATPLTGEVTALLRQWITERGSGHEDPLFP
                     TRQGRPLSRHTVGLLVGKHTETAAAGCPSLKTKRVTPHVLRHTAAMLWRAKGVDIATI
                     ALLLGHESVQTTHIYEHADPGLKEEAIARTAPLGTKPGRYQPSDTLLAFLEQL"
     gene            complement(3079..>3900)
                     /locus_tag="VF788_15145"
     CDS             complement(3079..>3900)
                     /locus_tag="VF788_15145"
                     /inference="COORDINATES: protein motif:HMM:NF013511.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006397 - mRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEX8935492.1"
                     /translation="FLRDDLKLELNAAKTLITHARTGAARFLGYEITIQHADDKVTGG
                     RRATNGSVELRVPKDVVTVTCARYMKGGKPTCRTLLVNEHDYVIVNTFGAEYRGIVQY
                     YLLAGNVHRLNRLNWVTQTSLLKTLARKHDSTVTKIAARHRAKIETPYGPRTCYEVVV
                     GRGKDRKPLVARFGGIPLRRQRNAILQDRVPSRTRYPRKELISRLVRGQCEFCKRSGD
                     VQVHHIRNLTELDKSGTPRPTWMELMVKMRRKTLVVCAACHDHIHIGQKTTTRAA"
BASE COUNT          613 a         1339 c         1253 g          695 t
ORIGIN      
        1 agcaagccga gcgattcgcc caggagcgtc gcgcggcggg cgtggtgtcg tggtcctgcc
       61 cgcgcagcgt ggcgctgccg ctggagtatt tgcggcagct gggggccgcg ccgccaccgg
      121 caccggcctg cccggtcggc ccgttggagg aattgctcgc cgactacggt aggtatctgt
      181 cgatcgagcg cgggttgtgt gatcacacgg tgctcgatgc gtacgtcccg gcggcgcatt
      241 tgttcctgtc tgacctgggc ggctcgaacg ggttggacct ggcacggctg gccgcggcgg
      301 acgtgagctc gtttctggcc cgcgagtgcc cgaaacgtag cgtgtccggg gcgcgcgatc
      361 tggtctgtgc gctgcggtcg ttgttgcgct acctgcacct ggcagggttg atcacctcgc
      421 cgctggtctg gtcggtgcct tcgatggccg acctgcgcga tcgcacgctg ccgcgtggtc
      481 tggaaccgac cgcggtgcgc cagctgcttg catcctgcga tcgacgtaag ctcgtcggcc
      541 ggcgtgattt cgcgatcttg ttgctgctgg cgcggctggg gttacgggtc ggcgaggtcg
      601 ccgcgatcac cctggacgac attgactggc gggccgggat gctgctggtc cacggcaagg
      661 gcactcgcga ggacacgctg ccgttgccga ccgatgtcgg tgaggcgatc gtgtcctatc
      721 ttcgccgtcg accgcggtgt gaatgccggg cgctgttctt gcgggtgacc gcaccacggc
      781 aggggctgaa ccggtgcacg gtcgcatggg tggtgcgcgc ggcgtgtgac cgggccgggc
      841 tgccccgagt cggggctcac cggctgcgcc acaccgccgc gacccagatg ctgcaagctg
      901 gggcgtcgct gccggagatc gggcaggtac ttcgtcatcg cgagcagaag accaccgcga
      961 tctacgccaa ggtcgaccac gtcgcgctgc gggcgctggc gcgcccgtgg ccgacgccgg
     1021 caggtgtgtc atgagcgcac tgcgcgcggc actggatgac tacctgcgca tccgtcgccg
     1081 gctcggcttt gtgatgcccc aggacgggcg catgctcgaa gggttcgtcg agttcctcga
     1141 ccgagccggc gcgcagcgga tcacgaccga gttggcgctg gcatgggcgc ggctccccgt
     1201 cgatgtccat ccgtttacgt ggcgccagcg gctcaccgtt gcgcggggtt tcgcccggta
     1261 tgtggccacg gtcgatcccg ccagcgaggt tccggccacc gacctgttgc ccgggcgccg
     1321 tccgcgcatc gccccctacg tctactccga gcaggagatc gcggcgttga tgggcgccgc
     1381 tcgacagctg cgaccggcgc tgcgcgcggc gcgtcacgag accctgatcg ggctgctggc
     1441 cgtcaccggc tgccgcccag gagaagccct cggactcgac cgtgcagatg tcgacctgga
     1501 caacggcgtg gtgcacgtgc gcgccggaaa gaacaacaaa cagcggcaag tgccgctgca
     1561 cccgagcacc atcagcgcgc ttcgcgccta cgccggccgg cgtgacgccc gcttcccgac
     1621 accgtccacg ccggcgttct tcctctccgc gcggggacgg cggatgggac gcgaggaact
     1681 caacgccacg ttcatcatgc tggtccgcca gagcggcctg gaaggccgcg gctcccgtgc
     1741 ccggccgcgc ccgcatgatc tcaggcatgc ctttgccgtg cacacgttgc tggactggta
     1801 tcaggccggt gaggacgtcg accggcggat gccgttgctg tcgacgtatc tggggcacgt
     1861 cgacccggcc agcacgtact ggtacctcga agcggtcccc gagttactcg agttggtcgg
     1921 ccagcggctc cagcggctgc ccggggtggt gtcatgagcg cgctcgcgcc cgcactgcag
     1981 gcgttcttca ccgaccggct gatcacccag cgtggatcga gcccgcgcac gatcgccgcc
     2041 taccgcgaca cgttcacgct gctactgcgc ttcgcgcacg accagaccgg caagcagccg
     2101 ttcgagttgg acatcgacga cctcaacgca ccattgatcg gcgccttcct cacccacctc
     2161 gaacgtgacc gcggcaacac tgcccgcacc cgcaacgccc gcctcggcgc ggtccactcc
     2221 ttctaccgtt tcgccgcgct cgaacacccc gaacacgcgc acacgatcgc gcgagtcatg
     2281 gcgatcccga ccaagcgcca cgaacgcagc accgtctgct acctcgacct caccgagatc
     2341 accgcgctgc tcgccgtccc cgaccgcggc acctggctcg gccgccgcga ccgtgcactg
     2401 ctggcactga tgatccagac cggggtacgc gtctccgaac tggtcggcct gcgcatccgc
     2461 gacgtccacc tcggcaccgg ccaccacatc caggtcctgg gcaagggacg caagaagcgc
     2521 gcgacaccgc tgaccggcga ggtcaccgcc ctgctgcgcc aatggatcac cgaacgtggt
     2581 agcgggcacg aagacccgct gttcccaacc cgccaaggtc gaccgctgag ccgtcacacg
     2641 gtcggactac tcgtcggaaa gcacaccgag acagcggcag cgggctgccc gtcgctgaag
     2701 accaagcgcg ttaccccgca cgtgctccgc cacaccgcgg ccatgctctg gcgagccaaa
     2761 ggcgtggaca tcgccacaat cgccctgctc ctgggtcacg aaagcgtcca aaccacccac
     2821 atctacgaac acgccgaccc tgggctcaag gaggaagcga ttgcccggac cgcgccgctc
     2881 gggaccaaac ccggcagata ccaaccctcc gacacactcc tcgccttcct cgaacagctc
     2941 tgattatgtt gagcgggtca tcagcgaacc cctgccacac aaggggaatc tcgacccacc
     3001 ggcagtgtcc tcaacataac cagccactcg acatacaacc gtgcgtgcga gatttccccg
     3061 cacacggctc tccagtgact acgccgcgcg tgttgtggtc ttttgaccga tgtggatgtg
     3121 gtcgtggcaa gcggcgcaaa ccacgagggt cttacgtcgc attttcacca tgagttccat
     3181 ccacgtcggt cgtggcgtgc cagacttgtc gagttcggtg aggttgcgga tatgatggac
     3241 ttgcacgtca ccgcttcgct tgcagaactc gcactgtccc ctgacgagcc gagagatcag
     3301 ctctttacgg ggataccttg tccggcttgg aacacggtcc tgaaggatcg cgttcctctg
     3361 tcgccgtagt ggaataccgc cgaaccgtgc gaccagtggt ttcctgtctt tcccgcgtcc
     3421 caccacgact tcgtagcatg tacgcggccc gtacggcgtt tcgattttgg ccctgtgtcg
     3481 ggccgctatc ttcgtcaccg tcgagtcgtg cttgcgggcc agcgtcttca gcagtgaggt
     3541 ctgggtgacc cagttcagcc ggttcagtcg atgaacatta ccggccaaca ggtagtactg
     3601 gacgatgccc cggtactcgg ccccgaaggt gttgacgatc acgtagtcat gttcgttcac
     3661 caagagggtt cggcaggtgg gtttaccacc tttcatgtac cgggcgcagg ttaccgtgac
     3721 cacgtccttg ggaacacgca attcgaccga gccattggtg gccctgcggc caccggtgac
     3781 cttgtcgtcc gcgtgctgga ttgtgatctc gtagccgaga aacctcgctg cgcctgttct
     3841 ggcgtgtgtg atcagcgttt tagcggcgtt gagttccagc ttgaggtcat cacgcaggaa
//
LOCUS       DASVXZ010000716         9539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1115716, whole genome shotgun sequence.
ACCESSION   DASVXZ010000716 DASVXZ010000000
VERSION     DASVXZ010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9539
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1115716"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(257..2392)
                     /locus_tag="VF788_15150"
     CDS             complement(257..2392)
                     /locus_tag="VF788_15150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX8935493.1"
                     /translation="MTDADHEAFARRWAEAIVGTSYVSMGRRVLAKHLLGLTSQLVDA
                     ALAAEFDPAIGRRVGVDMVAAHFTGTETLRETLALIAEGLPGLLGSAPGCADTGSRVA
                     QLAASMAAGYAGALRERSLDEQDAVYRAGLRARRQAEQALAASEAKFRAMFTDAAIGI
                     GIGDLEGNITDVNPALQQMFGYDHEEFTKLHLSAMVHPEDGASVWQTYEELIRGERDH
                     FRLEKRYYRSDGGEIWTHVTVSLVRDESGEPAYQVAMLEDISERRSLEAKLHHQAYHD
                     PLTALANRQMVNERLAQIFAGPAEQRRVGLCFLDLDGFKVVNDSLGHHVGDQLLKTVA
                     SRLTHCCGLGQLVARMGGDEFVIIVEGTTGEEDVAALADKVLAAMAAPIRVGKHELTV
                     TTSIGVVERPVADTNPEDLLQAADITMYRAKANGKARYAMYDQNRNDNEVARFTLSAT
                     MLAAVERDEFFVEYQPLLRLRDRSLVGVEALVRWRHPTFGVLGPERFIDLAEESGSIV
                     QLGRWVLFRACEQARAWRDAFGDAAPFVSVNIAPRQLHEAALVADVTKTLVDNGLEPS
                     SLQLELTEQALMGDEIGPLTVLTKLHGMGVRIALDDFGTGYWNIPHLRRFPLHELKLA
                     GSFAVGMQSASGLVDQRIVAALVDLAHALGLTVTAEGIETRAQFGRFRAAGCDTGQGS
                     LFASSGPAEQIDDMLQAVNPLCDVSKEAL"
     gene            complement(2389..3195)
                     /locus_tag="VF788_15155"
     CDS             complement(2389..3195)
                     /locus_tag="VF788_15155"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8935494.1"
                     /translation="MDLPSWASDDVDIEHASPARVYDYYLGGSHNFAVDRQMARQAIE
                     LWPELPLVMQANRAFLRRSVRYLVSQGITQFLDIGSGIPTEGNVHDVAQVASPRCRVV
                     YVDVDPVAVAHSRAMLSGNPLADIVQADLRDVTAILDDPRVNRLLNPSQPIGVLMVAM
                     LHFVTDDADPANIVAQYRKIMAPGSYLVVSHATHEGRPDQADSHTELYRRAGAPLTMR
                     SRREVEALLDGFELVPPGVVFMPLWRPDSPADVDDHPERFTGYAVVGRRA"
     gene            3390..4226
                     /locus_tag="VF788_15160"
     CDS             3390..4226
                     /locus_tag="VF788_15160"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEX8935495.1"
                     /translation="MAADESTTRRAAVLGSPIRHSLSPTLHCAAYAALGLTGWRYDAV
                     TCDEAALPAFVRRLGPEWAGLSLTMPLKRVALTVADQVSPLAGAVGAANTLVLGPSGS
                     PRRAENTDVAGILAALREADVDRVRAGVILGAGGTAQAALAALRELGENTPTVLVREP
                     ARTTDLRTAAERLGVRPTIRGGLPDLELPEADVVISTLPAGAADTLRPQRWVTRPVVL
                     DVVYTPWPTPLAASALTSGCRIVSGLSVLLHQAVVQVELMTRRRAPIDQMRVAMDAAA
                     LA"
     gene            4408..5526
                     /gene="hppD"
                     /locus_tag="VF788_15165"
     CDS             4408..5526
                     /gene="hppD"
                     /locus_tag="VF788_15165"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HEX8935496.1"
                     /translation="MIGGVAYNSGSDPFPVIGIDHIAFALGNARQAAHFYSTAFGMNC
                     VAYRGPEQGYRDAVEYVLISGRVRFVLTGAARAGTTLAQRVTAHGDGVSDLAIEVPDV
                     DGAVAFARRQGATILEEPAEATDEHGTVRSAALATYGDTRHTLIDRSRYRGPFLPGFV
                     ARPPLVPAGRRLFQAVDHCVGNVELGRMDAWVSFYNRVMGFENMAEFVGEDIATKYSA
                     LMSKVVSSGNHQVKFPLNEPAAGRRRSQIDEYLEFNGGPGVQHIALATGDIVGAVATM
                     RAQGVEFLDTPDAYYDTLGEWVGDTRVPLQTLRELRILADRDEDGYLLQVFTKPVQDR
                     PTVFFELIERHGSMGFGKGNFKALFEAIEREQARRGNL"
     gene            5531..6730
                     /locus_tag="VF788_15170"
     CDS             5531..6730
                     /locus_tag="VF788_15170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005464237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HEX8935497.1"
                     /translation="MAFYRQAGTIPRKRHTQHRRPDGTLYYEELMGAEGFSSDSSLLY
                     HQQIPSAIVDARHWKLPDHSTAPNEPLLPRHLRLPELFAGQEWKRLDIVTGRRLVLGN
                     ADVRISYVVAGLASPLYRNAVGDECVYLESGSATVQTVFGALEVGSGDYVVLPRGTTH
                     CWVPGPDEPLRAYCVEASSHIGPPPRYLSRFGQFLEHAPYCERDLRGPAAPQVVTGTD
                     IEVLVKHRGARGITGTVYTYPQHPFDVVGWDGCLYPYAFNVADFEPVTGRVHQPPPAH
                     QVFAGTGFVICNFVPRKVDYHPLAVPVPYYHSNVDSDEVMFYCGGDYEARKGSGIGQS
                     SISLHPGGHSHGPQPGAIERSLGVESFDELAVMVDTFHPLELGEGAFACEDPAYPWSW
                     SGRGPDR"
     gene            6727..7947
                     /gene="fahA"
                     /locus_tag="VF788_15175"
     CDS             6727..7947
                     /gene="fahA"
                     /locus_tag="VF788_15175"
                     /EC_number="3.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004334 - fumarylacetoacetase activity
                     [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetase"
                     /protein_id="HEX8935498.1"
                     /translation="MTSWVDVTADHQFGLHTLPFGVFTDATQPHPHVGVAIGEAILDL
                     TAASAVLLPEHAALFCGSTLDALLAAGRSAWSTIRAALTRWLTDEQHADVVAPLLIPA
                     TAATMRLPFSVADYVDFYSCEQHATNVGQILRPGQPPLPANWRHLPVGYHGRAGTVVT
                     SGTSITRPNGQRRLPDGNVVFGPTTALDFEAEIGCVVGTASKLGRGVPLADFADHVFG
                     VCLVNDWSARDIQAWEYIPLGPLLGKSFATSISPWVIPLDALSAARIQPPVRNPQPLS
                     YLDDTGTEPWGLDIAMEVRLNDELISCPPFSGMYWTPAQQLAHLTVNGACLRTGDLIA
                     SGTVSGAAPAERGCLLELSWNGSTPLTLADGSTRSFLADGDEVAISATAPGPEGSTVG
                     LGEVRGRVRAPVSA"
     gene            8058..8295
                     /locus_tag="VF788_15180"
                     /pseudo
     CDS             8058..8295
                     /locus_tag="VF788_15180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224463.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
     gene            8495..>9539
                     /locus_tag="VF788_15185"
     CDS             8495..>9539
                     /locus_tag="VF788_15185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEX8935499.1"
                     /translation="MVTPASTYRLQLNADFTFDDAAAVLPYLASLGVGAVYVSPLLAA
                     MPGSQHGYDVADPCRVSDVLGGEPGRRALVAAIRKQGLALVVDIVPNHLGVADAQANP
                     AWWDLLRFGPCSHFARWFDLTGWPLRLPILADSPDALADLKVDGELLRYHSHTFPLAP
                     GTASGSPQEVHEAQHYRLVSWRSDVGYRRFFAISDLAAVRVEDPEVFAATHGEVLRWV
                     AAGDVDGLRVDHPDGLTDPGGYLHRLRAHAPEAWIVVEKILEPGEELPPSWPVAGTTG
                     YDALAEVDGILIDPAGESVLTSLDAELTGVRTSWSDLVHDCKLDVATGMLSSELHRLA
                     ALAPTIPAAADALA"
BASE COUNT         1609 a         3258 c         3045 g         1627 t
ORIGIN      
        1 accagcgaag ctgcagcgat gagcccgctg accagcaggc cggtcagcaa accccgtcga
       61 gacatgagcc ctccctgttc ggcacgtcga gacgcactgc agtgagtgaa cacgtagcgc
      121 gcacgaacgt caacgctacg caatcatttg ggcccgtggc ctgatcggca gctacccatc
      181 gagacgcttg tgcgccggat tggttccatc ccatgcggga acagcgagcc ggtgccagat
      241 cagcagccga ccggcgtcat aaggcttctt tgctcacatc gcagagcgga ttaacggcct
      301 gtagcatgtc gtcgatctgc tcggcaggcc cggatgaggc aaacaacgag ccctggccgg
      361 tgtcacatcc ggccgcgcgg aaccgcccga actgggcccg cgtttcgata ccttccgcgg
      421 tgaccgtcag acccagagcg tgcgccaaat ccaccagtgc cgccacaatt cgctgatcca
      481 ccaggccgga tgccgactgc atccccaccg cgaacgagcc agccagcttg agctcgtgca
      541 gcgggaaccg gcgcaggtga gggatgttcc agtagccggt gccgaagtcg tcgagggcaa
      601 ttcgcacacc catgccgtgc agcttcgtca gtaccgtgag cgggcctatc tcgtcgccca
      661 tcagggcctg ctcggtgagc tcgagctgca ggctcgatgg ctccagcccg ttgtcgacca
      721 gggtctttgt gacgtccgcc accagggcag cctcgtggag ctgccggggg gcgatgttga
      781 cgctgacgaa cggcgcagcg tcaccgaagg cgtcccgcca agctcgggcc tgctcgcacg
      841 cccggaacaa cacccagcga ccgagttgca cgatcgaacc gctctcctcg gccagatcga
      901 tgaagcgttc aggtccgagt acaccaaatg tcggatgacg ccaccgcacc agcgcctcaa
      961 cgccgaccag cgaacgatcc cgtaggcgaa gcagcggctg gtactcgacg aagaactcat
     1021 cccgctccac cgcggcaagc atcgttgcgg acaacgtgaa acgagccacc tcgttatcat
     1081 tacggttctg gtcatacatc gcgtagcgag ccttgccgtt tgctttcgct cggtacatgg
     1141 tgatatcggc ggcttgcagg agatcctcgg gattggtgtc ggcgactggt cgctcaacca
     1201 ccccgatgct cgtcgtcacc gtcagctcat gcttgccgac tcgaatcggc gcggccatcg
     1261 cggccagcac tttgtccgcc agcgccgcca cgtcttcctc tccggtggtg ccctccacga
     1321 taatcacaaa ttcgtcgccg cccattcggg ccaccagttg ccccagcccg cagcagtggg
     1381 tgaggcggga cgcgacggtt ttcagtaact ggtcgccgac atggtgcccc aagctgtcat
     1441 tgactacttt gaacccgtcc aggtccagaa agcacaagcc aacccgacgc tgctcggccg
     1501 gcccggcgaa tatctgtgcc aagcgctcgt tgaccatctg ccggttcgcc agcgccgtca
     1561 acgggtcgtg ataggcctgg tgatgcagct tggcctccag gcttcggcgt tcggagatgt
     1621 cctccagcat cgccacctga taagccggct ctccggactc atcgcgcacc aacgatacag
     1681 tcacgtgggt ccagatttcc ccaccgtcgg atcggtagta ccgtttttcc agacggaagt
     1741 ggtcgcgctc acctctaatc agctcctcgt aggtctgcca cacgctggcc ccgtcctctg
     1801 gatggaccat tgcgctgagg tggagcttgg tgaactcctc atgatcataa ccgaacatct
     1861 gctgcaatgc cggattgaca tcggtgatat ttccctctaa atcaccgatt ccgattccta
     1921 tcgccgcgtc agtgaacatg gcccggaatt tcgcctcgct ggccgcgagt gcctgttcgg
     1981 cttgcctacg cgcgcgcaga ccggcgcgat aaaccgcatc ttgttcatcg aggctgcgct
     2041 cacgcaatgc cccggcgtat ccggccgcca tgctagcagc caactgagcg acccggctgc
     2101 cggtatcggc acatcctgga gccgaaccca acagacccgg caacccctcg gcgatcaggg
     2161 ccagggtctc tctgagcgtc tcggtaccgg tgaaatgcgc cgccaccatg tcgacgccca
     2221 cccggcgccc gattgctggg tcgaactccg cggccagtgc tgcatcgacc aactggctgg
     2281 tgagcccgag cagatgtttg gcgagcacgc ggcgtcccat cgacacgtag ctcgtgccga
     2341 caatcgcctc ggcccatcgc cgggcgaacg cctcgtgatc ggcgtcggtc atgcccgccg
     2401 gcctactacc gcatagccgg taaaacgctc gggatgatcg tcgacatcgg ccggcgagtc
     2461 cggccgccac agcggcatga acaccactcc gggggggacc agctcaaacc cgtcgagtaa
     2521 tgcctcgact tctcgccgtg accgcatggt cagcggtgcc ccggcccgcc ggtagagctc
     2581 cgtgtgcgaa tcggcctgat cgggccggcc ctcatgagtg gcatgggaga cgacgaggta
     2641 gcttccgggg gccatgatct tgcggtactg agcaacgatg ttcgctggat cggcgtcatc
     2701 cgtaacgaag tgcagcatcg ccaccatgag cacgccgatc ggctgggacg ggttgagtag
     2761 ccgattgacc cgggggtcat cgaggatcgc cgttacgtct cgcaggtcag cctgcacgat
     2821 gtcggcgagc ggattcccgg acagcatggc ccgactgtgg gcaacggcca ccgggtcgac
     2881 gtccacgtac acgactcggc accggggcga ggcgacctgg gctacatcgt gcacatttcc
     2941 ctcggtgggg ataccggagc cgatgtccag gaattgggtg atgccctggc tgaccaggta
     3001 acggaccgag cggcgaagga acgcccggtt ggcctgcatg accaagggca gctccggcca
     3061 caactcgatc gcctggcggg ccatctgccg gtccacggcg aagttgtgcg aaccgccgag
     3121 gtagtagtcg tacactcgag cggggctggc atgctcgata tccacgtcat cagacgccca
     3181 gctcggcagg tccatcggtc accctccctg atggcgttga cgacgttgga tgccgaacag
     3241 ccgcagtccg cgaacacgaa tgtactccgt gacatctcaa taacagaccg gaaacgtttc
     3301 gtgcaagggc acatgcatgt gccgttgggc tgtttcttga tactgcctcc gtggtgaaca
     3361 acagatggac accatgggaa gatcggcgag tggcggctga cgagtcgacg acacgacggg
     3421 cggcggtgct gggttctccg atccggcatt cactgtcgcc gaccctgcac tgcgccgctt
     3481 acgccgcgct cggcctgacc ggttggcgtt acgacgcggt cacatgcgac gaggcagcgc
     3541 tgccggcctt cgtccggcgg ctcggtccgg aatgggccgg gctgtcgctg acaatgccgc
     3601 tgaagcgggt ggcgttgacc gtcgccgatc aggtgtctcc gctggccggc gcggtaggcg
     3661 cggcgaacac tctggtgctc ggaccctccg gttcgccccg gcgggccgag aacaccgacg
     3721 tggcgggcat ccttgcggcg ctgcgcgaag cggatgtcga tcgagtccgc gccggggtga
     3781 tcctgggggc gggcgggacc gctcaagccg cacttgccgc actgcgagag cttggggaga
     3841 acaccccgac cgttctcgtc cgggagccgg ctagaacgac ggatctgcgc acggccgccg
     3901 agcggctcgg tgtccggccg acgatccgcg gcgggttgcc agacctggag ctgcccgagg
     3961 ctgatgtggt catctccacc ctgccagccg gtgccgccga cacactgcgc cctcagcgtt
     4021 gggttacccg accggtagtg cttgatgtcg tctacacgcc gtggcccacc ccgctggccg
     4081 catccgcact cacctcgggc tgccggatcg tcagcggcct atcggtgctc ctgcaccagg
     4141 ctgtcgtcca ggtcgagctg atgacccggc gacgtgcgcc gatcgaccag atgcgtgtgg
     4201 ccatggacgc cgcagccctc gcataggccg cccctggtgg cgggacacca gcgggtcagg
     4261 ttgtctgccc atctgtgcca cagcacaggg cgcggccgcg aatcggcacg acggtaggag
     4321 gaccgaggct agcatcgtaa ggtgaccagt tcgtcccggc cgccgtccag gcttgccggg
     4381 acagcggaac gtagcgatgc cgacgccctg atcggtggcg tcgcgtacaa ctctgggtca
     4441 gacccgttcc cggtcatcgg aatcgaccac atcgccttcg cgcttggcaa tgcacggcaa
     4501 gcagcgcact tctactccac agcgttcggc atgaactgcg tggcctatcg gggaccggaa
     4561 cagggctacc gcgacgcggt ggaatacgtg ctgatctcgg ggcgggttcg gttcgtgctc
     4621 actggggcgg cacgggccgg cacaacgctg gcccagcggg tgaccgcaca cggagacgga
     4681 gtgagtgacc tggccattga ggtgcccgac gtggacggcg cggtcgcatt cgcccgccgg
     4741 caaggcgcca ccattctgga ggaaccggct gaggccaccg acgagcacgg cacggtacgg
     4801 agtgcggctt tagcgaccta cggggacacc cggcacaccc tgatcgatcg gtcgcgctac
     4861 cggggcccct tccttcccgg attcgttgcc cgcccgccgc tggtgccggc agggcgccga
     4921 ttgttccagg cggtggatca ttgcgtgggc aacgtcgaat tgggccgcat ggacgcctgg
     4981 gtgtccttct acaaccgggt gatgggtttc gagaacatgg cggagttcgt cggagaggac
     5041 atcgcaacca aatactccgc gctgatgtcc aaggtggtga gcagtggcaa ccatcaggtc
     5101 aagttcccgc tcaacgagcc ggccgccggc cgcaggcgct cgcagatcga cgagtatctc
     5161 gaattcaacg gcggcccggg cgtgcagcac atcgcgctgg cgaccggcga catcgtcggc
     5221 gcggtggcca cgatgcgagc acagggtgtg gaattcctcg atacgccgga cgcctattac
     5281 gacactcttg gtgaatgggt tggcgacacc cgcgttcctc tccagacgct gcgtgagctc
     5341 cgcatcctcg ccgaccggga cgaagacggc tacctgttgc aggtgttcac caagccggtc
     5401 caggaccggc cgacagtctt cttcgaactc atcgagcggc acgggtcgat gggtttcggc
     5461 aagggcaact tcaaggccct gttcgaggcc atcgagcgtg agcaggcccg ccgcgggaat
     5521 ctgtagtgcc atggccttct accggcaggc gggcacgatc ccgcgcaagc ggcacaccca
     5581 gcaccgccgc ccggacggca ccttgtacta cgaggagctg atgggcgctg agggcttctc
     5641 ttcggattcc tcgctgctct accaccagca gatcccgtca gcgatcgttg acgcccggca
     5701 ctggaagctg cccgaccaca gcaccgcgcc caatgagccg ctgctgccca ggcacctccg
     5761 gctacctgag ctgttcgccg gccaggaatg gaaacgcctc gacatcgtga cgggtcggcg
     5821 cctggtgctc ggcaacgccg acgtcaggat ctcctacgtg gttgcgggcc tcgcctcccc
     5881 gctgtaccgc aacgccgtgg gcgacgagtg tgtttacctg gaatccggtt cggcaaccgt
     5941 gcagacggtg ttcggcgcgc tggaggtcgg ctccggtgac tacgtcgtgc tgccacgcgg
     6001 caccacccac tgttgggtgc cgggcccgga cgaaccgcta cgggcgtact gcgtcgaggc
     6061 gagcagtcac atcggcccgc cgccgcgtta cctgtcccgg ttcgggcagt tcctggagca
     6121 cgccccgtac tgcgagcgcg atctgcgagg tcccgcggcg ccgcaggtag tcacgggcac
     6181 cgacatcgag gtcctggtca agcaccgcgg cgcgcgcggc atcacgggca cggtgtacac
     6241 ctacccacag catcccttcg acgtggtggg ctgggacggc tgcctgtacc cgtacgcgtt
     6301 caacgtcgct gacttcgagc cggtcaccgg gcgcgtccac cagccaccgc ccgcgcatca
     6361 ggtctttgcc ggcaccggct ttgtgatctg caattttgtt ccccgcaagg tcgactacca
     6421 cccgctggcg gttccggtgc cctactacca ctccaacgtc gactccgacg aggtcatgtt
     6481 ctactgcggg ggcgactacg aggcacgcaa gggcagcggc atcgggcaga gctcgatctc
     6541 gctgcatccc ggtggtcatt cgcacgggcc gcagccgggg gccatcgagc gcagcctcgg
     6601 ggtggagtcc ttcgacgagc tggcagtcat ggtggatacc ttccacccgc tggaattggg
     6661 cgagggcgcc ttcgcctgcg aggacccggc gtatccgtgg agctggtcgg gacggggccc
     6721 agaccggtga ccagctgggt tgacgtaact gccgatcatc aattcggcct gcacaccctc
     6781 cccttcggcg tgttcaccga cgcgacccag ccgcatcccc acgttggtgt ggcaatagga
     6841 gaggccatcc ttgatctcac cgcggccagc gcagtgctgt tacccgagca cgccgcgttg
     6901 ttctgtggta gcaccctcga cgcattgctc gccgctggac gctcggcctg gagcacgatc
     6961 cgggccgcgc tgacccgctg gctgactgac gagcagcatg ccgacgtggt ggcaccgctg
     7021 ctcataccgg ccacagccgc gacgatgcgg ttgcccttct ccgtcgccga ctacgtcgac
     7081 ttttactcct gcgagcagca tgcgaccaac gtcgggcaga ttttgcgacc cggccagccg
     7141 cccttaccgg cgaactggcg gcatctgcca gtcggctacc acggccgggc cggcaccgtt
     7201 gtgacctccg ggacgtctat cacccggccg aacgggcagc gacggctccc ggacggcaac
     7261 gtcgtcttcg ggcccacgac cgcactggac ttcgaggccg aaatcggttg cgtcgtcggc
     7321 acggcctcga agctcggacg gggagtcccg ctggccgatt tcgccgatca cgtcttcggc
     7381 gtatgcctgg tgaacgactg gtccgcccgg gatatccagg catgggagta catccccctc
     7441 gggcccctgc tcggaaagtc attcgccacc tcgatctccc cctgggtgat cccgttggac
     7501 gcgctgagcg cggcgcgcat ccagccaccg gtgcggaacc cccagccgtt gtcctatctc
     7561 gatgacaccg gcaccgagcc gtgggggctg gacatcgcca tggaggtgcg gctcaacgac
     7621 gagctgatct cctgcccacc gttttccggg atgtactgga cgcccgcgca gcagctggcg
     7681 cacctcaccg tcaacggcgc ctgcctgcgc accggcgatc tcatcgcgtc cggcacagtc
     7741 agcggtgccg cgcccgcaga gcggggctgc ttgctagaac tcagctggaa cgggtcaacc
     7801 cctctgaccc tcgcggatgg ctccactcgc agcttcctcg cggacggcga cgaggtagcg
     7861 atcagcgcga ccgcaccggg ccccgaaggc agcactgtcg gactcgggga ggtgcgcgga
     7921 cgagtccgcg cacccgtgag cgcataaccg tgtccccaca ccacacgcca ctcacgggtg
     7981 ctggggcctg gcccggcact gcttacacaa cggctatgcc gtggccggca ccgacggagc
     8041 aaggcgcaca cgaggtggtc acccagttca agtccatggt gctggaactg cacgcggcga
     8101 acatcgaggt gattctcgac gtggtttaca accacgccgg cgagggcaac cacctcggac
     8161 cgaccctgtc ggtgcgcggc gtcgacaacc ctgcctacta gcgcctcatc acgggatggc
     8221 cttcgctact acatggacta caccggcacc ggcaactccc tcaacatgcg acatccgcat
     8281 gccctccagt tgatcactaa gagctgctcc aacgcccacc acgaggacat cgagatgcga
     8341 atgccggaaa atggctacgg gccggaatgg actgttgtgc tggacaccgc gaccggccag
     8401 acaccgggga cccgcgatgc taccgtcttc ggtgacgcca agatccccat catcggtcgg
     8461 tcgctggtcg tattggagcg tgcggcgtga cgccatggtg actccagcct caacctaccg
     8521 gctgcagctc aatgcggact tcaccttcga cgacgccgcc gccgtactgc cctacctggc
     8581 gtcgttgggt gtcggcgccg tctatgtctc cccgttgctg gcggcgatgc cggggtcaca
     8641 gcacggatac gacgtggcgg atccgtgccg ggtgtccgat gtcctcggtg gggagcctgg
     8701 ccggcgcgcg ctggtagccg ccatccgcaa gcagggtctg gcgctggtgg tggacatcgt
     8761 gcccaaccat ctcggggtgg cggacgcgca agccaacccg gcgtggtggg atctcctgcg
     8821 cttcgggccg tgctcccact tcgcgcgatg gttcgacctc accggctggc cgctacggct
     8881 ccccatcctg gccgactctc ctgacgcgtt agccgatctc aaggtggacg gtgagctgct
     8941 gcgataccac tcgcacacct tcccgctggc gccgggcacc gccagcggca gcccacaaga
     9001 ggtgcacgag gcgcagcact accgcctggt ctcctggcgg tcagacgtgg gttaccggcg
     9061 attcttcgcg atcagcgacc tcgccgccgt ccgcgtcgag gacccggagg tgttcgctgc
     9121 cacccacggc gaggtgctgc gctgggttgc cgcgggcgac gttgacgggc tgcgcgtcga
     9181 tcatcccgat ggcctcaccg accccggagg ctacctgcac cggctgcgag cgcacgcgcc
     9241 cgaagcctgg atcgtggtag agaagatcct cgaaccgggc gaggagttgc ctccgtcctg
     9301 gccggtggcc ggcactacgg gttacgacgc gctcgccgag gtcgacggca tcctcatcga
     9361 cccggcaggc gaaagcgtct tgacctcgct ggacgccgag ctgaccggtg tccggaccag
     9421 ctggtctgac ctggtgcatg actgcaaact cgacgtggcc accggcatgc tgagctcgga
     9481 gctacaccgc ttggcggcac tggcacccac cattcccgcc gcggccgatg ccctcgccg
//
LOCUS       DASVXZ010000717         3149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_439752, whole genome shotgun sequence.
ACCESSION   DASVXZ010000717 DASVXZ010000000
VERSION     DASVXZ010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439752"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1714
                     /locus_tag="VF788_15190"
     CDS             <1..1714
                     /locus_tag="VF788_15190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904091 - non-ribosomal peptide synthetase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Pls/PosA family non-ribosomal peptide
                     synthetase"
                     /protein_id="HEX8935500.1"
                     /translation="TGAVTLGKDVLVGEVTVLDIGTSLGDGAQLGHSSSLHAGQAVPD
                     GERWHGSPARRTEVDYRAVGPAGCGTLRRFTFPVLQLLFMLVVSAPLGIGGLALLFAA
                     VPQFAALLDSGTLDFTGWTFYRDALTVSSMLFFGAVLGGLLFLVTVPRVLSLAIKPDK
                     VYRLYGFHYWVHLTIGRMTNRKFFTRLFGDSSYIVHYLRSLGYDLSRVEQTGSNFGTE
                     VKHDTPYLSSVGRGTMIADGLSIINADFSSTSFRVSRVSIGQHSFLGNRIAYPSQGRT
                     GDNCLLATKVMVPLDGEVREGVGLLGSPSFEIPRSVERDNRLDLNSADELHRRLAAKN
                     KHNAVTMGLYLLVRWIFFFGITLLAMAGVDLYDSYGASMIALSNVGIFLFTVVYFMLV
                     DRCVRAFQALRPLGCSIYDRSFWRHERFWKVCADGYLQVFNGTPFKNVIWRLLGVRLG
                     RRVFDDGCFLTERTFVTIGDDCTLNAGSVIQCHSQEDGAFKSDRSMIGAGCTLGVGAF
                     VHYGVTMGEGAVLAPDSFLMKGEEIPQRARWGGNPAREVRHEPAGVWPHSPDICGAAL
                     ISGK"
     gene            1748..>3149
                     /locus_tag="VF788_15195"
     CDS             1748..>3149
                     /locus_tag="VF788_15195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8935501.1"
                     /translation="MLTLAKADREFWRGVLVAGGFSAIPRWTRDPVSGVVDHEVTIPD
                     DLVAVLCRLADELAVPLRSVLLAAHASVLTALSGEREIVTGYVAADGGRPGQALPCRL
                     TTESHSWRTLLLDVHRIESELLSHKDFPVDDLRRELCLTEPLFETVFDPTGDAHVLAQ
                     DLPPDTVLWVGISPRGGQLVLRLGYRSDVLDADCAARLAGYHLTALALIAADPDAEHG
                     RQSLLSDEERHFQCEGLAGPRRELPDHRFHELFEQRVAAHPEAIAATHGEVQWTYRQL
                     NAHANRLGRALLARGLRREDVVAVVTERNLDWVAAVLAVFKAGGVYLPIEPHFPADRI
                     ATMLSRAECGLVLTELGSTTMLQAAVDSLSGIQTLFVDTAYQEDHADGNLGVSVAADQ
                     LAYIYFTSGSTGAPKGAMCEHAGMLNHLYAKIDDLEIGEGQVVAQTAPQCFDISLWQL
                     VSALLVGGRTLLVEQEV"
BASE COUNT          499 a          990 c         1047 g          613 t
ORIGIN      
        1 gaccggcgcg gtcaccctcg ggaaggacgt gctcgtcggc gaggtgacgg tgctcgacat
       61 cgggacctcg ctgggtgacg gagcccaact cggccattcc tcgtcgctgc atgctgggca
      121 ggctgtgcca gacggcgagc gctggcatgg gtccccagcg cggcggaccg aggtggacta
      181 ccgggcggtc ggccccgccg gctgcggcac cctgcgaagg ttcacattcc ccgtcctgca
      241 actgctgttc atgctggtcg tgtccgcgcc gctggggata ggcggtctgg ccttgctgtt
      301 cgccgcggtc ccgcagttcg ccgcgctgct ggactcaggg acgctggatt tcacgggttg
      361 gacgttctat cgcgacgccc tgaccgtttc ctcaatgctg ttcttcggcg cggtccttgg
      421 cggcctgctc ttcctggtca ctgtccctcg cgtactgagc ctcgccatca aaccggacaa
      481 ggtctatcgc ttgtatggct tccactactg ggtccacctg acgatcgggc gcatgaccaa
      541 taggaagttc ttcacgcgtc tgttcggtga cagttcctac atcgttcact atttacgcag
      601 cctcggatat gacctttccc gggtcgagca gacggggtcg aacttcggta cggaggtcaa
      661 gcacgatact ccgtacctga gttcggttgg acgcggaacg atgattgctg atgggctgtc
      721 gatcatcaat gctgacttct cgagcacgtc attccgggtg tcccgggtat cgatcgggca
      781 acacagcttc ctcgggaaca gaatcgccta tccctcgcag ggtaggacgg gcgacaactg
      841 cctgctcgcg acgaaggtca tggttccact cgacggggaa gtccgggagg gtgtcggact
      901 tctgggctcg ccgagcttcg agattccgcg gtcggtggag cgtgacaacc ggctcgacct
      961 gaacagcgcg gacgagctgc accgccgact ggctgccaag aacaagcaca atgctgtcac
     1021 catggggctg tacctgctgg tgcgatggat ctttttcttc gggatcaccc tgctcgctat
     1081 ggccggtgtg gacctttatg actcgtacgg tgcgtcaatg atcgcgctgt ccaacgtcgg
     1141 gattttcctc ttcaccgtcg tctatttcat gctggtcgac cgttgtgtga gggcatttca
     1201 ggcattgagg ccgctggggt gctcgatcta tgaccgttcc ttctggcgac atgaacgttt
     1261 ctggaaggtg tgtgcggatg ggtacctcca ggtcttcaac ggcaccccgt tcaagaacgt
     1321 gatctggcgg ctgctgggtg ttcggctcgg ccgcagggtc ttcgacgacg gctgcttctt
     1381 gacggagcgg acattcgtca ccatcggcga cgactgcacg ctcaatgcag gcagcgtcat
     1441 ccagtgccat tcgcaggagg acggcgcctt caagtccgac cggagcatga tcggcgccgg
     1501 ctgcaccctc ggggtcggtg cctttgtcca ctacggcgtg acgatgggcg agggtgcggt
     1561 gcttgcgccc gactctttcc tgatgaaggg cgaggagatc ccacagcgcg cgcggtgggg
     1621 cggaaatccg gccagggagg ttcggcacga gcccgcaggc gtctggccac acagtcctga
     1681 catctgtggc gctgctctga tcagcggcaa gtagcaacct ggcaatgtga gtgaggagaa
     1741 gggttcgatg ttaacgctgg ctaaggccga ccgggagttc tggcgtggcg tgctggttgc
     1801 tggcgggttc agtgcgatcc cgcggtggac ccgcgatccg gtgtcgggcg tcgtggacca
     1861 tgaggtgacg atcccggacg atctggtggc ggtgttgtgc cggctggcgg acgagttggc
     1921 ggtgccgttg cgctcggtgc tgctggccgc gcacgccagc gtgctcaccg cgctctccgg
     1981 cgagcgtgag atcgtgacgg gctacgtcgc cgccgacggg ggccggccag gacaagcact
     2041 gccctgccgg ctgaccaccg aatcccactc gtggcggacg ttgttgctgg acgtccatcg
     2101 aatcgagtca gagctgctgt cccacaaaga ctttcccgtc gatgatctcc ggcgcgagct
     2161 gtgcctgacc gaaccgctgt tcgagaccgt gttcgatccg accggcgacg ctcacgtcct
     2221 cgcccaggat ctccccccgg acaccgtgct atgggtggga atctcgccac gcggcggcca
     2281 actcgtgctg cgcttggggt accgcagcga cgtactcgat gcggactgcg ccgccaggct
     2341 cgccggctat cacctcaccg cgctggcgct gatcgccgcc gatccagacg ccgagcacgg
     2401 gaggcaaagc ctgctgtccg acgaggaacg ccacttccag tgcgaagggc tcgccggacc
     2461 gcgcagggaa ctgccggacc accggttcca cgagctgttc gagcagcgcg tggcggcaca
     2521 cccggaggcc atcgcggcca cgcatggcga ggtgcagtgg acctataggc agctcaacgc
     2581 ccatgccaac cgcctgggac gagccctgtt ggcgcggggg ctgcgccgtg aagatgtcgt
     2641 cgcagtggtg accgagcgca acctggactg ggtggccgcc gtcctcgcgg tgttcaaagc
     2701 cggtggcgtg tacctgccca tcgagccgca tttcccggcc gatcgcatcg cgaccatgct
     2761 gtcgcgcgcc gagtgcgggc tcgtgctgac cgaacttggc agcaccacca tgctccaggc
     2821 ggctgtggac tcactgtccg gaatccagac gctcttcgtc gacacggcct accaggagga
     2881 ccacgctgac gggaatctcg gtgtcagcgt cgcggcggac cagctcgcct acatctactt
     2941 cacctccggc tccaccggtg cgcccaaggg cgcgatgtgc gagcacgcgg gcatgctcaa
     3001 ccacctctac gccaagatcg acgacctgga gatcggcgag ggacaggtgg tcgcccagac
     3061 cgcacctcag tgctttgaca tatcgctgtg gcaactggtt tccgcgctcc tggtcggggg
     3121 gcggaccctg ctggtcgagc aggaggtga
//
LOCUS       DASVXZ010000718         9320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_888608, whole genome shotgun sequence.
ACCESSION   DASVXZ010000718 DASVXZ010000000
VERSION     DASVXZ010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9320
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888608"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /locus_tag="VF788_15200"
     CDS             complement(<1..832)
                     /locus_tag="VF788_15200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935502.1"
                     /translation="MPAIPVVRALVGRGHDVWWYVGRRFRAQVDACGAQFVEYGQAYD
                     YDDRDYDAAFPGRSGLTGLNQVRFDLLNLFIAQAGKQHRDLAAILDRFPADVVLGDPS
                     MFAAVTIEETGGPPSAIYNVSCLGLPGREVAPCGLGLLPGASLLGRARNRALRFLAPN
                     VVFREASQALARVCAEVGVVPRKFEGAVLSPNLFLQPTVEAFEYRRSDLPPQVHFIGA
                     LLDRPTEFMSPHWWDELIAGRRPVILVTQGSGATAPDQLVAPTISGLVDDDLMVIAAG
                     V"
     gene            complement(1213..1365)
                     /locus_tag="VF788_15205"
     CDS             complement(1213..1365)
                     /locus_tag="VF788_15205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935503.1"
                     /translation="MSTADLYLRHRPDLGVRPGESDPAGMLGRVLLLLAVITLLAVLA
                     LAWWLA"
     gene            1605..2216
                     /locus_tag="VF788_15210"
     CDS             1605..2216
                     /locus_tag="VF788_15210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015803703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX8935504.1"
                     /translation="MVLDALRALPPTPMLILAFLCPALEASTMLGVVFPGEIAILVAG
                     AAAQVGTLPLWAVIPTGVAGAVIGDAVGFAVGRRYGEQMLRRLPERLVKPEAVRTTKD
                     LIRRRGPIVVLIGRTTALLRALVPGLAGMSGLSWERFLPYNLLGGVIWATLVATLGYL
                     AGASLAVVQEQVGMVSNVILGAVVALGLVAWWRSHVRRRQSRL"
     gene            2466..3638
                     /locus_tag="VF788_15215"
     CDS             2466..3638
                     /locus_tag="VF788_15215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005159007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine methyltransferase"
                     /protein_id="HEX8935505.1"
                     /translation="MTDYDPRTATGIPTEPVGSLPRTAKLQAAYAAHDEGKIDFAALE
                     AEQEAAVKDSIERFEATGSPIISDGEQRSSSFATYPITDTLNGTGLADNLGPGGQFFA
                     IFADGHGRQLPRLTGGPLRYKRYAADALKKSIQHAHVPMKQAVIAPSMLALLYPLNDE
                     VPGYSREDFENDIVNECVKDIREAFAAGAARVSVDFTEGRLATREDPRNPWTGAGLLP
                     HFIELNNRVMANFTAEERKRIGVHTCPGGDRDSVHSADVPYNNLLPSMFKINAGYFLI
                     QLASERDRDTVYQSIADNLQEDADGVAQMAYIGTCVPQSPRPESPQEICDQLLKAANF
                     IDKQRIGSTDDCGFSPFSIDEKPNHGSPDYAREIAFQKIKNRVEGTKMAAEKLGVS"
     gene            complement(4021..4533)
                     /locus_tag="VF788_15220"
     CDS             complement(4021..4533)
                     /locus_tag="VF788_15220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935506.1"
                     /translation="MRVLWQDHGTWTRLAIVSFADNSPDLQPTQERLLANQTDIGNAV
                     KPYYGNDAGNKLTALLQQHIQAATGVLKAAKTGNPAEVDQAKAALYANGNQIADFLHG
                     ANPGNWPLPAVQNMMKTHLDQVVEMGSDELTHHYAESVGVWNAYRDHILGMADTLSNG
                     ITKQFPNQFS"
     gene            6508..6690
                     /locus_tag="VF788_15225"
     CDS             6508..6690
                     /locus_tag="VF788_15225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935507.1"
                     /translation="MTLALRRLWADHVIWTREYVVAAIADAPDAGAVAGRLLKNQEFR
                     QRRGPLLRRGSREQTH"
     gene            6710..6967
                     /locus_tag="VF788_15230"
     CDS             6710..6967
                     /locus_tag="VF788_15230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935508.1"
                     /translation="MITVDLSAAAKSGDRAKFSQADAAWDRNAADIASFLASANPNWP
                     EKDVADLLGQHLTLTKKEAVVRLKSNCGMTLRPSITSSRRS"
     gene            8907..9002
                     /locus_tag="VF788_15235"
     tRNA            8907..9002
                     /locus_tag="VF788_15235"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8942..8944,aa:Sec,seq:tca)
     gene            9131..>9320
                     /locus_tag="VF788_15240"
     CDS             9131..>9320
                     /locus_tag="VF788_15240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935509.1"
                     /translation="MWHWFRDNSRNDFGPWARGSRITGDQDTVAGPGCLIQSDYRTGP
                     HGNFEVVVPLRQTNDTDKS"
BASE COUNT         1833 a         2839 c         2930 g         1718 t
ORIGIN      
        1 ggacccctgc ggcgatcacc atgaggtcgt cgtcgacgag cccgctgatc gttggcgcca
       61 ccaactggtc cggtgctgtg gccccggagc cctgggtgac gaggatgaca gggcgccgcc
      121 ccgcgatcag ctcgtcccac cagtgtggtg acatgaactc ggtgggtcga tcaagcagag
      181 cgccgatgaa gtgcacctgc ggcggcagat cggatcgccg gtactcgaac gcttccacag
      241 tcggctgcag gaacaggttg ggcgagagga ccgcgccctc gaatttgcgc ggcaccaccc
      301 cgacctcggc gcacacccgg gcaagcgcct gggacgcctc ccggaacacc acgttcggcg
      361 cgaggaaccg cagtgcccgg ttgcgtgccc ggcccagcag cgaagcaccc ggtaacagtc
      421 ccagaccgca cggtgccacc tcacgaccgg gcaaccccag gcaggagacg ttatagatcg
      481 ccgaaggcgg accgccggtc tcctcgatcg tcacggcggc gaacatcgag ggatcaccga
      541 gcacgacatc ggccgggaac cgatccagaa ttgcggccaa gtcacggtgc tgcttgccgg
      601 cttgtgcaat gaacaggttg agcagatcga accggacctg gttcagaccc gtgagcccgc
      661 tacgaccggg aaacgcggcg tcgtaatcac gatcgtcgta atcgtaggcc tggccgtatt
      721 cgacgaattg cgcgccacag gcgtcgacct gcgcgcgaaa cctccgcccg acgtaccacc
      781 agacgtcatg tcctctccca accagggcgc gaaccactgg aatcgcgggc actacatgcc
      841 cggtgatcgg ttgcgaagct atgagaaagc gcgccactat ctgctctcaa ggcagttcct
      901 tacggacggc acggacgacg gaccgtccgg tttgcgctgc cacgcccgtc tgtacatggg
      961 ctcatcgtgg gcggccgcgg tcctgttacc tcaccggacg atcccgtgcc gctgcgtaat
     1021 ctcgcaggct cgggtggagg cgcgatgttg ctcaccgcga tgcacgaacg ggacggccgg
     1081 ctacacccgt acggacccgt tcttcggcaa gtcgattccc ggcggagcag agtggtcgat
     1141 cagaccgtcg cccggttcct cgaccaacaa gtcacgtcct ggctccggtc agcctggacc
     1201 cggacacgac gatcaggcca gccaccacgc cagcgcgagc acggcgagga gcgtgatgac
     1261 cgccagtaac agcagcaccc ggcccagcat ccccgccgga tccgactctc ccggacgcac
     1321 acccaggtcc ggacggtggc ggaggtacag atcagcagtg ctcataggac taccgtaatg
     1381 acaagctggt taccgcgctg ctcacgttca gttagctaca ggcaaaatcc tcgcagcgcc
     1441 gcgtgcttcc tgcgaggtca tagctgccaa cgaaaggtag ttaccagggc acgcacggtc
     1501 gagagctgcc aggttgctga cgctgggcgc tggcggaccc ccgctgaccc cacagctgca
     1561 gccgcgggtt ggcagttgcc tggtcgatgg gtcaagatca gggcatggtg ctcgacgcac
     1621 tgcgggcact tccgccgact ccgatgctca tcctggcctt cctctgcccg gcgctggagg
     1681 cctccaccat gctcggcgtc gtcttccccg gcgagatagc gatcttggtg gcgggtgccg
     1741 ccgcgcaagt ggggacgttg ccgctgtggg cggtgattcc gactggcgtg gcgggagcgg
     1801 ttatcggtga cgcggtcgga ttcgccgtcg gccgccgcta cggcgagcag atgctgaggc
     1861 gattgccaga gcgacttgtc aagccagagg cagtgcgcac gaccaaggat ctgatacgcc
     1921 ggcgcggacc gattgtcgta ctaatcggcc gcacaaccgc gctgttgcgc gcattggttc
     1981 ccggcttggc cggaatgagt ggcttgagct gggagcgatt tctgccttat aacctgctgg
     2041 gcggggtgat ctgggccacc ctggtggcca cgctgggtta cctggcgggc gctagcctgg
     2101 cagtcgtgca ggaacaggtg ggcatggtca gcaacgtcat ccttggtgcc gtcgtggcat
     2161 taggactagt ggcatggtgg cgctcgcacg tccggcggcg acaatcgaga ctctgagcaa
     2221 catagatcag cgagccagtg aaatttagta cgacatatgg gtggccgttg accgactcat
     2281 tgttaactga ctatgatccg gatcacagtt agacagacct gtctgtgccc gcccttcagt
     2341 tcactaacgg taacggcggg cgccactcgt ggaacaattt cgacaggaag gagtccatga
     2401 gcacgtagtc atcggtccac ctaactcatt catttgagcc tactcactca ttagagagga
     2461 caatcatgac cgattacgat ccgagaacgg ccactggaat tcccaccgag cccgtcggct
     2521 cgcttcctcg cacggccaag ctgcaggccg cctacgctgc ccacgacgag ggtaagatcg
     2581 acttcgctgc actggaagct gaacaggaag cagccgtaaa agattcaatc gagcggtttg
     2641 aggccaccgg atcacccatc atctccgacg gtgagcagcg ttcgtcaagc ttcgccacct
     2701 accccatcac cgacactctc aacgggaccg gcctcgctga caacctggga ccgggcggcc
     2761 agttcttcgc gatcttcgct gacggccacg gacggcaact gcctcgcctc accggtgggc
     2821 ccctgcggta caagcgttac gcggccgacg cgctcaagaa atccatccag catgcgcacg
     2881 tgcccatgaa gcaggccgtg atcgcaccgt ccatgctcgc cctgctgtac ccgctgaacg
     2941 atgaggtgcc cggctacagc cgggaggatt tcgagaatga catcgtcaac gaatgcgtga
     3001 aggacatccg cgaagcattc gccgccggtg cagccagggt ctccgtcgac ttcaccgagg
     3061 gccggctggc cacgagggaa gatccgcgca acccgtggac cggtgctggc ctgctcccgc
     3121 acttcatcga gctgaacaac cgtgttatgg cgaatttcac cgcggaggag cgcaagcgga
     3181 tcggcgtaca cacatgtccg ggtggtgacc gtgactcggt gcatagtgcg gacgtgccct
     3241 acaacaacct gctcccgagc atgttcaaga ttaacgccgg ctacttcctg atccagctgg
     3301 cgagtgagcg ggatagagac accgtgtacc agtccatcgc ggataacctg caagaagatg
     3361 ctgatggggt cgcccagatg gcttacatcg gcacctgcgt gccgcagagc ccacggccgg
     3421 agagccccca ggagatctgc gatcagctgt tgaaagcagc caatttcatc gacaagcagc
     3481 gaatcggctc caccgacgac tgcggtttct caccattcag catcgacgag aaacccaacc
     3541 acggctcacc cgactacgct cgcgagatcg cgttccagaa gatcaagaac cgggtcgaag
     3601 gaaccaagat ggccgccgag aagctaggcg tcagctgagt tagtggcgcg gagcggcccg
     3661 gtcgcaccgc tgagcgagcg ggccgctccg cttaattccg gctgagttgg gcctccgcga
     3721 tcgctcgcgc ggtggtgtca gcggccgcaa aggcgtcgag cgtcgagttg ttcccctcag
     3781 cggtctggtg gtgaggatac cggccagagt gtgtaatgca tgcatctgat cgcagtccag
     3841 tctctgagcc gaccgcgaac tgtcgagtcc ccgttgctgt cctggagcgg gccagatgca
     3901 gcgcatgcgc gaggtgggcg agcagcatcc gctagcgtaa gttttagagt tgcgcccgca
     3961 ggagggtcgt tgggtgggtg agggtggtac ccaggcgcag ggtgtttcgc cggccggcga
     4021 tcagctgaat tggttgggga attgcttggt gatgccgttt gagagggtgt cggccatgcc
     4081 caggatatgg tcgcggtagg cgttccagac accgacactt tccgcatagt ggtgtgtgag
     4141 ctcatcggat cccatctcga cgacctggtc cagatgtgtc ttcatcatgt tctgcaccgc
     4201 gggtagcggc cagttcccgg gattggcgcc gtggagaaag tcagcgatct ggttgccgtt
     4261 tgcatataac gcggctttgg cctggtcgac ttccgccgga ttgccggtct tggcggcctt
     4321 gagcaccccg gtcgcagcct ggatgtgttg ctggagcaag gcggtgagct tgttgcccgc
     4381 gtcgttgccg tagtagggct tgacggcgtt gccgatatcc gtttggttgg cgagcaggcg
     4441 ctcctgagtt ggctgcaggt ccggggagtt atccgcgaag ctcacgatcg ccaggcgagt
     4501 ccaggtcccg tggtcttgcc acagcacgcg catgttgtca tgcaacgcgc tcgccttggg
     4561 gctcggagcc ggcgcagtcg cggcctgtga tcctgattgc tctgattgtt gcccggagcc
     4621 gcaggcggct gcggcaagag ctatcgccgc gacaccaacg gagagccgtg cgccgataga
     4681 gcgttggatt gtactcattg ctatccctca taactgtaac gaataggtga aatgttaggt
     4741 accctgctcg tcgggggcca aaccctggaa gggctccggt tcggtcatca ctgctcctcg
     4801 tcaacgccat aggtgccggt gaggctggga tgccgccgga ccgagagggg aggtgcccgg
     4861 caggcttcgt cgggtcgagg gtttagaccc gaggcgttac tgaatcagga ggcgtcactg
     4921 tcatctacta aggtaagcct ttcctgctcc tgcgtggaca taccattcgg atagagtaat
     4981 tttcactttg gcagggcagg aactattgct tttagttact attaaactct taagggtgta
     5041 gaggcatacc cttgtcggtg gcgtctgagg ccaggtcact aggcagtaag gagcggaacc
     5101 gcgcactgac caggctatgg aagcgagtag cccgttgcgt cggcgcggtt gcctcgatgc
     5161 aggcctgggt agggctgccg cgacgaagta cccgcgactc cgcgtgatcc atcacgttcg
     5221 tgactagccc taggaccaat ccggggcgag gtccgccaga cgaggccagc acgtggggcc
     5281 ggctcgacgg agtgcgtgtt gtgatctgcc cgctggtcag gtcaagggtg agcaggacgg
     5341 cgttgccgtc gcaggcgata aacgccagtc ggccggcagg gtccaggcga gtccgtggcc
     5401 gtgccggcag tcgggcaacg gtacccggcg cggaatcgtc aggatggccg gatcgatgac
     5461 cgcgcagacc tggtcatgat cgttttccca acacgttctg aggactcagg gagccatccc
     5521 taccgatcca tctcgatcca gcgcgggtcg atctcgacgg cgccggcagc ggcgagcacg
     5581 gcaacggtct gccggcacgc agttgtgggc tggacacgac cggggccgga catggcagag
     5641 ccttcgaatg ccggcggctc gggccgcccg agcagcagcc cgtgaacgtt ggctgtcgcc
     5701 tgcccgtgtc ggacaagaaa tagcgcccgt ccgcgttaag cgatgtgcgt gctcgcggct
     5761 tcccgggact aatggccgtc gccaacgtcg ctcacgggat cgtaggagca gcagcccccg
     5821 aggaacttcg tgcccagccc acccagctcc acatcgaaac ggccaccgac caacgaagga
     5881 tctaccggcg aaccatctcc gcggaaccag gcacctacac agcagcaccc ccagtccgca
     5941 gcaggcgaac cagacaacta accaggagat caaaaagaag tctaaccatc cgagtacacc
     6001 gattatccag aaatccatga tcgaaccagt cgttgacaag ctgatagttc aattcggtta
     6061 cccaaaattg gaagtctgaa tcgatcccgc cgaagtccac aattcggatg tgggcgcagg
     6121 cttgtcccca agccccgatc atcgcagtcg cttgtgcagg ggctagatct tctcaatcag
     6181 gaccgacttg atggtctcag tgtcgtgtcc ggtgtcggga gctgctaggc agtgatgaga
     6241 tcgacgtgac ccaactgccg ctccacgtga tgcccgactc ttgcagagcc cgggcctcgt
     6301 ctgggttgtt catgagcagc cgcaccggac cgatgccgac agtgttcacc acagccgctg
     6361 cggcgtcgta gcatcggccg tcatggggga tccgagccgc ctcccggtgt atcccgacag
     6421 aagaacccct cgctgctgca gcgtgttcgt gatcgttttc gtcgggatta cgaccagtcc
     6481 acgccgacca gcccgaaggc tctgtcgttg acgttggcgc tgcgacgcct gtgggcagac
     6541 cacgtcatct ggacccgcga gtacgtcgtc gctgcgatcg ccgatgcacc ggatgccggt
     6601 gcggtcgccg gcaggctgct gaaaaatcag gaatttcggc aacgccgtgg tccccttcta
     6661 cggcgaggca gccgggagca gactcactga gctgctcaag gagcacgtca tgatcaccgt
     6721 ggatctgtcc gcagcggcca aaagcggtga ccgggccaag ttctctcaag ccgacgcggc
     6781 gtgggaccgc aacgcggccg atatcgcttc cttcctcgcc agcgctaacc cgaactggcc
     6841 ggaaaaagac gtcgctgacc ttcttggcca acacttgacg ctgaccaaaa aagaggctgt
     6901 cgtccgactg aagagcaatt gtgggatgac gttgaggcct tcgatcacat cttcacggag
     6961 atcttgacgg tggcagacgt gttggcggcg ggcatcatta agcaatttcc aaagaaattt
     7021 taagcggtgg cgatgaagac gccacgcagt gcaccatcgg cgatcgaatt cgaggatctc
     7081 cggggtgtgg gcggcaggaa acattcgctg tcctcgttgg ccggtgcgcg agcgaccgtc
     7141 gttgtcttca tcagcaacgg ttgcccgacc gttcggtcct acgaagacag actggtgctt
     7201 atggcaagag tccggcgacc cagtggagtg gaacttatcg cgatcgatcc aaacaatgca
     7261 agctcgtccc cgttcgacac cttcgatcag atgatcaagc gttcgagtac gcgggcatac
     7321 aattccccta cttaaaagat gagaacgggg cggttgcgcg cagctatggc accgtctgca
     7381 ctccgcatgc tttcgtccca gactcgcatc actgcattgt ttaccgcggg cggatcgacg
     7441 attcacgcat gggtaagtcc atcgccagct gtgacctggc aaacgcagtc gcggatgttg
     7501 tcgccggccg gccggttaca gctggcgaga ctgagccgtt tggatgctcc atcgtctgct
     7561 agcagaagag ggcttagacc gatgacattt aatcgtggtg agcacagaaa ggatacatag
     7621 gaaggggtcc aatgatgacc agctcaggaa gtaccctcca gccagagaca ggggagggca
     7681 ccatcgacta ccggaaggcg gcagaaaagc tagcagccgc cgactatcag acacgcatgg
     7741 agcatttcct tcgcgtgaaa acatcaactc cgctcaagtc gttcggtgga cgcgcacatg
     7801 gagggccact taatgaccgt gccaggtaga accagcacgc cacattgcga cgactgcgcc
     7861 atggacatgc cgggctgagc cggtgcgcac cggtgccaag cgaccctggc tcatggcgga
     7921 gttagcttca tcccgtgatc atccccttaa ccgcaggtcc ttgccggaag agaccgtacg
     7981 gccccttccg gccccgaggg gcgctctagc aaattgagcg ccacgtcagc gtacgcggac
     8041 gatgatcact accgcagtcg gtcgactccg cgatggggtt tgcggccagt ccgatcccac
     8101 ctgatcggga atgctcgggt aacaaccgaa aggagcgcac ccgccagaag acctacggtc
     8161 acaccaccaa ccgccaaagc agctagtgat tcgtgaacct tgatacttta cgcggtttca
     8221 cttgagtata gtgttggata ggtagatgga gttgactaaa gaccagcgag tcgagttgca
     8281 ggctgtagtg aagagcgccg atgttccagc gccggtggcg acacgggcgc tcgtggtgtt
     8341 gtggcgcgcg gaaggccgat tgaagaagta gatcgctgag ttggcggggt tatcgcgtcc
     8401 gacggtggat ctgtggctgg accgttatga gacagaagga ctcgccggat tggttggccg
     8461 atctcacgcg gcacctcgcg agtaggttcc tgcgccgatt cgtgtccaat ctttggcggc
     8521 gactcgaacg agcccaccga ctggtattgg gctgtcgcat tggtcgagcc ggagatggcg
     8581 gctttcatct gcggcatgat actgccgcgc gatggttgcg cgagaccccg gcgctacgtc
     8641 gagtaggtgg ttcgaaccca ggtcagcgcc gatcaccgca atacattccg ccgaatgacg
     8701 cattcagagc gctcccatcc cccaggatct cgctgcgatc acccctgttg tcaccgagtt
     8761 cgccagcaga gctgtccacc gccggtccgc cgaccctgtt ggcgaactcg gcgttgtcga
     8821 gctcggcgca ccggcagcac ctaggatccc gctaccccgg gtggcgtgga gggcgggtga
     8881 atgagcaggc cctaagatct cgtgacggag gtgtatgggc gcctggtggc ccccgcggtc
     8941 ttcaacaccg acgtggtcga gcaactcggc caggcgggtt cgattcccgt ccgcctccgc
     9001 cagacccgtg agccgacttg aggctgaaag gcggtgtaag atgcccagac tacacgtcag
     9061 tctcattcaa tctgatttcg ggcgcggcca gcacggtaac tttgaagcag ttatcgtaca
     9121 gggtgcgcag ttgtggcact ggttccggga taattctcgc aatgactttg gaccttgggc
     9181 tcgcggatcg cgtattactg gcgaccagga caccgttgcc ggaccgggct gcctcatcca
     9241 atccgactac cgcaccggcc cacacgggaa cttcgaagtc gtagtcccgt tacggcaaac
     9301 caacgacacg gataaaagcg
//
LOCUS       DASVXZ010000719         3602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_708059, whole genome shotgun sequence.
ACCESSION   DASVXZ010000719 DASVXZ010000000
VERSION     DASVXZ010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_708059"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VF788_15245"
     CDS             complement(<1..716)
                     /locus_tag="VF788_15245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX8935510.1"
                     /translation="MTTLVIPPPPGPERPSESARRVKFADGGADRVFGLALRSTGTMV
                     LLIMGTVGLFLFFRGSGALADAGLRFLTTQAWEPDSHNFGIATVISGTLMIAAVAAAL
                     AVPLAIGMALYIAEYAPPALRRLLINMVDLMAAVPGVVYGLWGFYLLNPLIIPLARWI
                     SSTFGWLPFLGIHDAHPGDPLETATKYESSTFVAGIVVALVIMPTVCSVMRESFSQAP
                     VGEREGAYALGATRWGMIRSV"
     gene            complement(713..1138)
                     /locus_tag="VF788_15250"
     CDS             complement(713..1138)
                     /locus_tag="VF788_15250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935511.1"
                     /translation="MATPRFQVLSVARSAQVPLPREPDAGAGTWPQIPLSRERGFTWR
                     FMSANNRSLARSPHTSADVESCMATIRTLQEGLPFAVGETSRNRYRQWVWRVRLADEV
                     IATAARSYSRQVRARITCNAFLNQVAGTRGSAPVHVMHR"
     gene            1787..2341
                     /locus_tag="VF788_15255"
     CDS             1787..2341
                     /locus_tag="VF788_15255"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8935512.1"
                     /translation="MIRIRLSRLLAAVAVLTLTTFASASAVASTSAPNQLPTIGLPPG
                     KFLLIGDVARPQILDVTALQAMPSRTITVTFKAGGSSETHTYIGPRLVDVLAQAGPQF
                     DPAIKNDKLRHFISVGAADGYRALVAYGEIDPNFENKDVLLATREDGRSLATDGPRLV
                     VPGDIAGGRYVTNVVRVFFQKPAL"
     gene            complement(2478..2621)
                     /locus_tag="VF788_15260"
     CDS             complement(2478..2621)
                     /locus_tag="VF788_15260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935513.1"
                     /translation="MIVTVRRGFVWVSIMPPFTWEAILDPGKVDELVRTLTLAGKDVR
                     DQE"
     gene            2899..3351
                     /locus_tag="VF788_15265"
     CDS             2899..3351
                     /locus_tag="VF788_15265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935514.1"
                     /translation="MLVDDGLGIGDGLGVGEGDDGGVDPGLTGGGDGALGAGVAEGGS
                     GDGELAVVSGVAVDGGSDVVGVGGGESDEVVGGGVMVSDGGASDVAGAGAGVVVVSAA
                     TCAATCAAAATGATANVAASGTIGSPPSPFVPGGTGPGADGVGTTPVR"
BASE COUNT          674 a         1167 c         1143 g          618 t
ORIGIN      
        1 acgctgcgga tcattcccca ccgggtggcg cccagtgcat aggcgccttc ccgttcgccc
       61 accggagcct gcgagaagga ctcccgcatc accgagcaga cggtcggcat aatcaccagc
      121 gccaccacga tccccgccac gaacgtcgag gactcgtact tggtcgcggt ctccaacggg
      181 tcgccggggt gcgcgtcatg aatgcccagg aacggaagcc agccgaaggt cgacgagatc
      241 catctggcta gcgggatgat cagcggattg agcaagtaga agccccacag cccatagacc
      301 acacccggca ccgcggccat caggtccacc atgttgatca gtaaccggcg cagggccggc
      361 ggcgcgtact cggcgatata gagcgccatc ccgatggcca gcggcaccgc gagtgcagcg
      421 gcaaccgcgg cgatcatcag cgtgccgctg atcaccgtcg cgatgccgaa gttgtgcgag
      481 tcgggctccc acgcctgcgt ggtgaggaac ctcaggccgg catcggcaag ggcacctgag
      541 ccccggaaaa agaggaacag ccccaccgtg cccatgatca gcaacaccat cgtgccggtg
      601 ctgcgcagcg ccagcccgaa tacccggtcc gcaccaccgt cggcgaactt cacccgccgc
      661 gccgactctg atgggcgctc cggtcccggt ggcggcggga tgacgagggt cgtcaccggt
      721 gcatcacgtg cacgggtgcc gaccctcgag tcccggcgac ttggttcagg aaggcgttac
      781 acgttatccg ggcacggacc tggcgggagt agctgcgagc cgctgtggcg atgacctcgt
      841 cggccaagcg gacccgccat acccactgcc gataccggtt tcgcgacgtc tctccgacag
      901 cgaatggcag tccttcctgc aaggtacgga tggtggccat gcaggactcc acgtcggcag
      961 aggtgtgtgg tgacctcgcc aggctgcggt tgttggcgga catgaaccgc caggtgaatc
     1021 cccgctcccg ggacaagggg atctgcggcc atgttccggc cccagcatcg ggctcacggg
     1081 gcagcggcac ctgagcagaa cgcgcgaccg aaagcacctg gaaccgagga gtagccatca
     1141 cgcctcgctc gccagcgcag cgcagatgag gttcgtcatg cacgccacct cccgcaaaca
     1201 cggatatgag gtggggacgc tgcgcctcga agatgaacga gagaaggcca accgtcgacc
     1261 agaggatttc cacataccct acaagggacg gctacgtatc gttaaaggct gggtcgataa
     1321 gagatccgcg actgcgggtt cagcgcccgt cgcggaagga tgagcgagga gctgtcagtc
     1381 ggatcgcgct aactcgcggc gacgcgggtc cacgacccgg ccacttagcc atcccctgtg
     1441 ggttgcgtcg aaatcccttg gtgggctgcc ggacttcctc tgttcatctt tagcacgcag
     1501 cgtctcccca tgaaatccgc gtatgcggcc gacggacggg aaccgaccct catctgcgac
     1561 tggctgatgg accccccgcc ggtcacccgc gtctttgcgg tcttcaccgg atagcggtct
     1621 cgcactttgc agacacctgc ccgttcagac gctatgcgtc gatgacgccc aatgaaatac
     1681 ccattaccac acttcagacc tcacgctgcc cgtctttgat taggagagga atgccaatcc
     1741 atgacctgcg attcccatcg caacctataa tcgaaaggat cgctccatga ttcgcatacg
     1801 cctgtcgcgg ttgttagctg ctgtcgctgt gctcactctc acgacattcg ccagcgccag
     1861 tgccgtcgcc agcacctccg cgccaaacca gctgcctacc atcgggctgc caccaggcaa
     1921 gttcctgctg atcggcgacg tcgcgcgacc ccagatcctc gacgtcaccg cgttgcaggc
     1981 gatgccctcc cgcacgatca ctgtgacgtt caaggcgggt ggtagctccg agacccacac
     2041 ttacatcggt ccgcgcctgg tcgacgtgct ggcccaggca ggtccccagt tcgacccagc
     2101 gatcaagaac gacaagctgc gccacttcat cagtgtgggc gccgccgatg gctaccgggc
     2161 gctggtggcc tacggcgaga tcgaccccaa cttcgagaac aaggacgtgc tgctggcgac
     2221 cagggaggat ggtcgctcat tagccactga cgggccacgg ctggtcgtgc ccggtgacat
     2281 cgccggtggt cgctatgtca ccaacgtggt gcgcgtgttc ttccagaagc cggccctttg
     2341 atcacggttg cacgacgatc acttggcaga gggacggtca aaatgggcga gaagccgccc
     2401 caaaagggaa gcctccgtcc ccaccgcggc gctgagggat ctgaagcaca gtcgttgccg
     2461 acttctggtg ctgaccctca ttcctgatct ctcacatctt tgccggccaa cgtcagcgtc
     2521 cgcaccagct cgtccacttt tccaggatca agaatcgctt cccaggtgaa cggcggcata
     2581 atcgataccc acacgaatcc acgcctgacc gtgacaatca cgaccgcagg gaccccacca
     2641 ctacccgtgg cagtcacgat cctcggcatc ggggaaggca agtgcgaggc gcgtccattg
     2701 ccgatatggt tactgccccg acggtcgcca gcatgctggc ctgctgcgcc accccgatag
     2761 gatgaattta gcaggtcatg cagccacaac attccatttg cccgtgaacc gaggccctag
     2821 caaccgttga tctgacattc caccgtcctg taagtttcga agatccacca tggcaggcat
     2881 cggggtcacg gtgtgagcgt gctggttgac gacgggctgg gcatcggtga cggattggga
     2941 gttggtgaag gggatgatgg aggagtcgat cctggcttga ccggcggtgg agacggtgca
     3001 ctgggggccg gcgtggccga ggggggctct ggagacggcg agcttgcggt ggtgtccggg
     3061 gttgccgtcg atgggggctc cgacgttgtg ggcgtcggcg ggggcgaatc tgacgaggtc
     3121 gtcggaggcg gtgttatggt ctctgacggc ggcgcgagcg acgtcgctgg cgccggggcg
     3181 ggcgttgttg tcgtcagcgc agcgacttgc gctgccactt gcgcggcggc ggccaccggg
     3241 gccacagcca acgtggccgc atcaggcacg atcggtagcc cgccatcgcc gttcgttccc
     3301 ggcggcaccg gcccaggtgc cgacggcgta gggacgacac ccgtcaggta ggcgtgtgcc
     3361 cattgcagca cgatgtccac ataggtgacc gaatggttgt accggaacac agctgcctgc
     3421 agttgagccg gatcggacag gctggcgccg ctggcgcaaa gatagagacc ggtcgcaatg
     3481 gtggagtcat agatgttgtt cgggttcgcc acgccgtcgc cattgccatc gacgcccccg
     3541 gtacgccagc tggatgggat gaattgcatt gggcccaccg cccggtccca ggtggtgtcc
     3601 tg
//
LOCUS       DASVXZ010000720         1683 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_888886, whole genome shotgun sequence.
ACCESSION   DASVXZ010000720 DASVXZ010000000
VERSION     DASVXZ010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888886"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VF788_15270"
     CDS             <1..316
                     /locus_tag="VF788_15270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935515.1"
                     /translation="ILTGAEEEDVRAWFLHAPAAADHAGVPTMVIDAIHVSCDHRPSR
                     LTGRLTPQRPLIPGPICRLAPAAPQPSVEERNNLQVTSSKPTRTSNGSEIRHLLGGID
                     VA"
     gene            477..863
                     /locus_tag="VF788_15275"
     CDS             477..863
                     /locus_tag="VF788_15275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935516.1"
                     /translation="MAEGLPCGTDADVHADHWELHPDAEEVVSCLTGGIRLYLPPEQP
                     GAAEEIKLAAGTAVIVPRGRWHRIDLAASSDIMAVTLPRGSRLESGLQTWATRERTER
                     CDDRPMHRDADAGGGMRCGLYCCKLH"
     gene            787..>1683
                     /locus_tag="VF788_15280"
     CDS             787..>1683
                     /locus_tag="VF788_15280"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX8935517.1"
                     /translation="MIARCTVTLMLAAVCAAGCTAASSTREGNHADRTEQAAVQQALD
                     ASIDSAVVGALIVVDDGDKTWQATAGSAVAGHRQPVDPDSIFRIGSITKPFVATMVLL
                     LINEGRIALDGSVQQYLPGLLPAGYPPITVRQLLQHTSGIPEFIDQLAGTAGQILDHR
                     FQTYAPEELIGIATARPLRFAPGTDMAYSNTNYLLLGMLIGKITGHRWDDELQQRIAG
                     PLGLTRTRDPGSDPRLPEPHAHGYLTRPDGSLVDITEMNTSGVDAAGSMISSARELNA
                     FFAALLSGKLLSARLVDQMTTPG"
BASE COUNT          317 a          591 c          518 g          257 t
ORIGIN      
        1 gatcttgact ggcgcggagg aagaggacgt gcgcgcgtgg tttctccacg cgccagccgc
       61 agcagatcac gcgggtgtgc cgacgatggt gatcgacgcc atccacgtgt cctgcgacca
      121 ccgaccgagc cggctcacag gacggctcac acctcaacga ccactcatcc ccgggccgat
      181 ctgccgcctt gccccggcgg caccgcagcc gtcagtcgaa gagcggaaca acctccaggt
      241 gaccagttcg aagcccacgc ggacctcgaa cggctcggag atcagacatc tcctcggtgg
      301 catagacgtg gcatagacat cgaagcactg gacacgggcg accagatacg gcgatcccgc
      361 ggcccctcct ccgcaatgtc cggataggga ccctctccgt acaccttgac cgcactttca
      421 ttaaggcggc caggtgcacg ccgagcaaag aatgttcggc ccgagcggga cggctggtgg
      481 ctgagggcct tccatgtgga actgacgccg atgtccacgc cgaccattgg gaactccacc
      541 ccgacgcgga agaggtcgtc tcctgcctta ccggcgggat acgcctctac ctccctccgg
      601 agcagccggg agcagccgag gagatcaagc tggcggcggg aaccgcggtc atcgtgccgc
      661 gcgggcggtg gcaccgcatc gaccttgccg cctccagcga catcatggcc gtcaccctgc
      721 cacgcggcag ccgcctggag agcggcctcc aaacctgggc cacacgcgag cgaacggaga
      781 gatgtgatga tcgcccgatg caccgtgacg ctgatgctgg cggcggtatg cgctgcgggc
      841 tgtactgctg caagctccac tagggaaggc aaccatgccg accgcacgga gcaggcagcg
      901 gtccagcagg ccctggacgc gtcgatcgac tccgccgtcg tcggcgcgtt aatcgtcgtc
      961 gatgacggcg acaagacgtg gcaggcaaca gcaggcagcg cagtggccgg acatcgacaa
     1021 ccggtcgatc cggacagcat tttccgcatc ggcagcatca cgaaaccctt cgtggcgacc
     1081 atggtgctgc tgctcatcaa cgagggccgc atcgctctcg acgggtctgt ccagcagtac
     1141 ctgcctggcc tgctgccggc cggctatccc ccgatcaccg tgcgccaact tctccaacac
     1201 accagcggaa tacccgagtt catcgaccag ttggccggga ccgccggcca gatcctcgac
     1261 caccgcttcc agacctatgc ccccgaggag ctgatcggca tcgccacggc acggccactg
     1321 cggttcgcgc cgggcaccga catggcgtac tcgaacacca actatctgct gctgggcatg
     1381 ttgattggga agatcaccgg acaccgatgg gacgacgagc tccagcagcg gattgccgga
     1441 ccgctgggtc tgacccgaac ccgtgatccg ggcagcgatc cccgattgcc cgaaccccac
     1501 gcccatgggt atctgacccg tcccgatggg tcgctggtgg acatcaccga gatgaacacc
     1561 tccggcgtgg acgcagccgg ctccatgatc tcctccgcgc gcgagctcaa cgccttcttc
     1621 gcggcgctgc tgtccggaaa gcttctatcc gcgcggctgg tggaccagat gacgaccccc
     1681 ggt
//
LOCUS       DASVXZ010000721         4711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1605410, whole genome shotgun sequence.
ACCESSION   DASVXZ010000721 DASVXZ010000000
VERSION     DASVXZ010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4711
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1605410"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            536..1411
                     /locus_tag="VF788_15285"
     CDS             536..1411
                     /locus_tag="VF788_15285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935518.1"
                     /translation="MPAAKEVTNLTTIPPFIQRWQAAIARRDVGASVQAGQDYEAAWQ
                     AVETYVNHRSLPLYTDIEVDTQFVIDDGLKQPQPDWPALSRLAEHLRQQVNLTIGFIA
                     AQPRLSPLFDDLVPLRGVRAQLLISRDALTAGDVTKARTFFNNFKNGFTPNVQNLISV
                     RSASALQETKDARQAASVKFADSNATAADLTPLVARLLDRYGFGQNLLKAAARAADLH
                     KTAVTDADRTLLTQLNDVTRGLKSSLPKFPSDPAGAAAGGATGPGSAFAKVQPACTEF
                     GALNTGDQRTESSMW"
     gene            complement(1384..2322)
                     /locus_tag="VF788_15290"
     CDS             complement(1384..2322)
                     /locus_tag="VF788_15290"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HEX8935519.1"
                     /translation="MPDKLLRMERAGSRTSRPVMLAIAGDSAAGKTTLTKGLVDALGA
                     HRITSLCVDDYHRYDRQERKGLPFTALHPDCNYVQIMEQHLGLLATGQPVLKPVYDHD
                     TGQLTRPELIEPTEFVIVEGLLPLHTRLAQACFDITVYLDPPEHIRRDWKVKRDVTKR
                     GYTPEQVLSELDKREPESEAFIRPQRSAADIVVRFGPVETRHDPPETPLSAELTLRPT
                     IRHPDLTHVFRETDRRAMHLRLARDEVGRPVEALHIHGYVPREESQLLEKAIWTKLDT
                     ETELPSSLGQIGEGARSEPLAVTQLLLLYHMLDSVR"
     gene            2450..3109
                     /locus_tag="VF788_15295"
     CDS             2450..3109
                     /locus_tag="VF788_15295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8935520.1"
                     /translation="MEGQPLRIVLVDDHEMVRTGLKAMLSRFAGQVRVVGEAADAPTA
                     RRVVAGLNPDVVLADVRLGGQSGLDLCRDLVRDLPERRVVLLTVYDDEQYLFQAMQAG
                     AAGYLLKQIDGPELIEQLQRVHAGAVVVDADLAARAGASADRLQAGEFWPGARLGLTQ
                     RESEVLSLMVAGSSNRAIAAELIVGEETVKSHVRGIYRKLAVTDRAAAVAKALREGLF
                     R"
     gene            complement(3134..4120)
                     /locus_tag="VF788_15300"
     CDS             complement(3134..4120)
                     /locus_tag="VF788_15300"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HEX8935521.1"
                     /translation="MNEVLHGTAQAMVSRPRGILAADESVGTMSSRLEKAGVEVSAEN
                     RRAYREMLLTTPGLDAGISGVILSDETFHQKLSDGNTFPLAVHSLGILPGIKVDTGAK
                     PLAGSPDEKITEGLDGLRERLADYVSSGARFAKWRAVIVIGEGTPTRNALRANAHALA
                     RYAALCQEAWVVPIVEPEVLMDGDHTIERCAEVTRATLEQVIAELDEAGVDLAGTVLK
                     PNMVVPGSTSGQQASPEEVAEQTVATLRAVVPDSLAGVAFLSGGQPPEVATANLAAMQ
                     KHDTPWPLTFSFGRALVDPALKAWHGDPARVSAGQEALADRVNPNSAALVNA"
     gene            complement(4117..>4711)
                     /locus_tag="VF788_15305"
     CDS             complement(4117..>4711)
                     /locus_tag="VF788_15305"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX8935522.1"
                     /translation="QVWDLVRAHEVDLVIAGAPPSGVDARVVATKPNELVVTAAPSVA
                     EAFDWVTTPWLLREQGSATRTRVESYLKSQHVSPPRLVLGSNGAVVAGAVAELGCALV
                     SRDAIAELLADGKLVQLPAPGTPMRRPWHAVVGSYSGAATWLFVRHLRSSGWRPHGQR
                     SAAMSPDPPTNGGMPRRSRSRVNAGGADGPAAAEGAS"
BASE COUNT          815 a         1611 c         1505 g          780 t
ORIGIN      
        1 taggggaggc taacttaata agaagaatgg gtctaggcct ccgcccggag ttccgctacg
       61 acgccggaaa catgtttgcc taaatatcag ggcaacgatc cgtgaaggaa cgactactgg
      121 acgcgccatt tctagcgctc ggtcaatggt cagacgcgag gagtgagaag aggcagccta
      181 agactggcag agatccagag gcctgctttc tgtaacacct cgccacaggg gccgattact
      241 accgagccgg tcaacttagg caatcctaac aaccttaggt aatcccagta atcggcatcc
      301 ccctagcgct ctcttcacta gttcaggaga cctctcccat ggccgtcaga cgctccttac
      361 tcctcgcccc ggcgctggtc cttgcgctca gtaccggcgg cgtcgtcagt gccgctgcag
      421 cggtacctac tcctgtcgtt cctccgccgc cgctccagat agacctctcc agcgattggc
      481 ccagggactg atcaaccgcg ccctgtccca gccacccttc ccgaggtttc ccacgatgcc
      541 tgccgctaag gaagtcacca acctcacgac gatcccgccg ttcatccagc ggtggcaggc
      601 ggcgattgct cgccgcgacg tcggtgcctc ggtccaggcc ggtcaggact acgaagctgc
      661 gtggcaggcc gtcgagacct acgtcaacca ccggtcgctt ccgctgtaca ccgacatcga
      721 agttgacacc cagttcgtca tcgacgacgg cctcaagcag ccacagcctg actggccggc
      781 gctgtcgaga ctggctgagc acctgcgcca gcaggtcaac ctgaccatcg gcttcatcgc
      841 tgctcaacca cgcctcagcc cgctgttcga cgacctggta cccctgcgcg gggtacgggc
      901 ccagctgctg atcagccgcg acgctctcac cgccggcgac gtcaccaagg ccaggacgtt
      961 cttcaacaac ttcaagaacg gcttcacgcc aaacgtccag aacctcatca gcgtccgttc
     1021 ggccagtgcc ctccaggaga cgaaggacgc gcggcaggcc gcttcggtca agttcgccga
     1081 ctccaacgcc accgcggccg acctcacgcc gctcgtggcc cgactgctcg accgctacgg
     1141 cttcggccag aatctgctga aggcggccgc ccgggccgcc gacttgcaca agaccgccgt
     1201 caccgacgcc gaccggaccc tgctcaccca gctcaacgat gtgactcgcg ggctcaagag
     1261 cagcctgccg aaatttccgt ccgaccccgc tggcgccgct gccgggggcg caacgggtcc
     1321 cggctccgcc tttgccaagg tacaacccgc gtgcaccgaa ttcggcgcac tgaacaccgg
     1381 agatcagcgg actgaatcga gcatgtggta gagcagcagc agctgggtga ccgccagtgg
     1441 ctcgctacgg gcgccctcac cgatctggcc tagcgaggac ggcagttccg tttcggtatc
     1501 gagcttggtc cagatcgcct tctccagcag ctggctctct tcgcgaggca catagccgtg
     1561 aatatgcagc gcttccaccg gtctgccgac ctcgtcgcga gccagccgca ggtgcatggc
     1621 gcgccggtcg gtctcgcgga agacgtgggt gaggtcgggg tggcggatcg tggggcgcaa
     1681 ggtcagctcg gccgagaggg gagtctctgg cgggtcgtgg cgggtttcga cagggccgaa
     1741 gcgaaccacg atgtcagcgg cggagcgctg cggacggatg aacgcctcgg actcgggctc
     1801 gcgcttgtcg agttcgctca ggacctgttc gggggtgtat ccacgcttgg tgacgtcccg
     1861 cttgaccttc cagtcgcgac ggatgtgctc aggcgggtcg aggtacacgg tgatgtcgaa
     1921 gcatgcctga gccagccggg tatgcagcgg taacagaccc tcgacgatca cgaactcggt
     1981 cggttcgatg agctcaggac gggtgagctg accagtgtcg tggtcataga ccggcttgag
     2041 caccggctgc ccggtggcca gcagccccag gtgctgctcc atgatctgga catagttgca
     2101 gtccgggtgc agagcggtga acggtagccc cttgcgctcc tgccggtcgt aacggtggta
     2161 gtcatccacg cacagggagg tgatccgatg agcgcccagc gcgtccacca gccccttggt
     2221 caatgtggtc tttcccgcag cgctgtcgcc cgcgatcgca agcatcaccg gccgcgacgt
     2281 cctggacccg gcgcgctcca tccgcaacaa cttgtcgggc acgcgacaca ccccatttct
     2341 tcacaaggtc gtgcaacgac agtaaacgcg tcgattgcga cccggctccc cttctggagg
     2401 gattggcgag gggaaccaca gcgccaactg gcccgattac actcagcaga tggaaggcca
     2461 gccgctccgt atcgtgctgg tcgatgacca cgagatggtg cgaaccggcc tcaaagcaat
     2521 gctcagccgg ttcgccggcc aggtcagggt agtcggcgaa gccgctgatg cgccgactgc
     2581 gcgacgggta gtagccggct tgaaccccga cgtcgtcctc gccgacgtgc ggttaggcgg
     2641 gcaaagcggc ttggatctgt gccgcgacct cgtgcgggac ctccccgaac gccgggttgt
     2701 cctgctgacc gtctacgacg atgagcaata cctcttccaa gccatgcagg ccggcgcagc
     2761 gggctacctc ctcaaacaga tcgacggccc ggaactgatc gagcagttgc aacgggtgca
     2821 cgccggtgca gtcgtcgtcg atgccgatct ggctgcgcgg gccggtgcat ccgccgaccg
     2881 gttgcaagcc ggcgagttct ggcctggcgc acggctcggt ctcacccagc gggaaagcga
     2941 ggtgctctcg ctgatggtgg ccgggtcctc caaccgcgcc atcgccgctg aactgatcgt
     3001 cggtgaggag acggtgaaga gccacgtacg tggcatctac cgcaagctgg cagtcaccga
     3061 ccgcgctgcg gcagtagcca aggccctccg agaaggacta ttccgctgac cagacccaca
     3121 gcgtcgttcg ggtctacgcg ttcacgaggg cggccgagtt gggattgacc cggtcggcca
     3181 atgcctcctg gcccgcgctg acccgggctg gatcaccgtg ccacgccttc agcgccgggt
     3241 cgaccagggc acgcccgaag gagaaggtca acggccatgg tgtgtcgtgc ttctgcatgg
     3301 cagccaagtt ggcggtagcg acctccggcg gctgacctcc ggagaggaag gcgaccccgg
     3361 ccagcgaatc ggggaccacc gcgcgcaagg tggccacagt ctgctccgcg acctcctcgg
     3421 ggctggcctg ctgaccggac gtcgagcccg gcacgaccat gttgggcttg agcacggtgc
     3481 cggcgagatc cacaccggct tcgtccagct ccgctatcac ctgctccagc gtcgcacggg
     3541 tcacctcggc gcaccgctcg atagtatgat ccccatccat cagcacctcc ggctcgacga
     3601 tgggcaccac ccacgcctcc tggcacagcg cggcgtagcg ggcgagcgcg tgggcgttgg
     3661 ctcgcagcgc gttccgggtt ggcgtgccct caccgatgac gatcacggcg cgccacttgg
     3721 cgaatcgcgc gccactggag acgtagtcgg ccagccgttc ccggagaccg tccagaccct
     3781 cggtgatctt ctcatcgggt gagccggcga gtggcttcgc gccggtgtcg accttgattc
     3841 cgggcaggat gcccagcgag tgaacggcga gagggaaggt gttcccgtcg ctgagcttct
     3901 ggtggaaggt ctcgtccgac aggatcactc cgctgatccc ggcatccagt cctggggtgg
     3961 tcaggagcat ctcgcgatac gcccgccggt tctctgcact gacctcgacg ccggccttct
     4021 ccagccggga agacatggtg ccgacgctct cgtcggccgc aaggatgccg cgcggccggc
     4081 tcaccatcgc ttgggcggtt ccgtgcagca cctcgttcat gacgctccct ccgcagcggc
     4141 gggcccgtcc gcgccgccag cattgaccct agaccgtgat cggcgcggca taccaccgtt
     4201 ggtaggcgga tcgggggaca tcgcggcact ccgctgaccg tgtggtcgcc agccggacga
     4261 tcgcaggtgc cggacgaaca gccaggtggc agcaccggag taggagccga cgactgcgtg
     4321 ccacggccgc cgcatcgggg tgcccggagc cggtaactgg accaactttc catcggccag
     4381 caactctgcg atggcgtccc gggacaccag cgcgcagccg agctcggcca ccgcgccggc
     4441 caccaccgcc ccgttggaac ccagcaccaa gcggggcggt gagacgtgct gcgatttcag
     4501 gtaggactcg accctcgtgc gggtggccga cccctgctcg cgcaacagcc agggggtggt
     4561 cacccagtcg aaggcctcgg cgaccgaggg cgctgcagtg acgacgagtt cgttgggctt
     4621 ggtggcgacc acccgagcgt ccactcccga gggcggcgct ccggcgatga ccaggtcgac
     4681 ctcgtgggcc ctgaccaggt cccacacctg c
//
LOCUS       DASVXZ010000722         3758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1605465, whole genome shotgun sequence.
ACCESSION   DASVXZ010000722 DASVXZ010000000
VERSION     DASVXZ010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1605465"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /locus_tag="VF788_15310"
     CDS             <1..1305
                     /locus_tag="VF788_15310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935523.1"
                     /translation="AQFLAHGVEGRRDLPLPLDLMVQGAVIALLASFFGLGVLWRTPR
                     LRAGAAGRELPPAIQRLVDSTGFRWLLRLLGLAVPAYAVATALLSPAGAPNPLPYAVY
                     VLFWVGIVPLSLLFGPVWRRVNPLRTIHLLLCALTRIPADRGLRSLPQWLGYWPATLS
                     LLSFVWLELAAPDRDAVSVLLLYLAGYATIQLGAALLFGEGWFTTGDGFEVYSTLVAT
                     LSPFGRRDDGRLVIRNPLDGAATFGPAPGAVALIAVLLGSTFFDTISGSVEWDRALQS
                     APVVPTLISTAGLLVMIGIVGITFVGATLLAGRAGDRGRWPVPGLLAHTVIPIVVGYV
                     IAHYFSFLLFQGQEALALLSNPQGRDAHVSGAINYGLITAAGIAFIQVIAVIVGHVLA
                     VISAHDRSVALFPRADAVVGQLPLMVLMVGYTVGGLTLLFAA"
     gene            complement(1347..3287)
                     /locus_tag="VF788_15315"
     CDS             complement(1347..3287)
                     /locus_tag="VF788_15315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015802030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX8935524.1"
                     /translation="MALSPPASRPRRLTAWLLHHRVESVPGPATREAHHEEHAWWKVM
                     CLTGVDYFSTLSYLPGIAALAAGAVSPLATLLIVLLTLFGMLPMYRRVAAESPNGQGS
                     VAMLERLLPFWRGKFFVLTLLGFVATSWIITITLSSADAAVHVAENQFAPELLTGHKV
                     LITIALLVVLGAVFLAGFSEAVRVAVPLVAVFLLLNAVVVVVGLVRSVGEPVVVQRWL
                     EALLSSGGPADVALTAFLAFPSLVLGLSGFETGVSMMPLVRADGQDEQERLRARIANT
                     RKLLTVAAVIMSGYLITISFVTTVLIPPDEFRQGGRANGRALAYLAHELLGDAFGTVY
                     DVSSIVILWFAGASAMAGLINIVPRYLPGYGMAPEWSRAVRPVVLVYTTVAIVITILF
                     HADVDAQAGAYATGILAMMVSAAAAVTMSARRRRRAGAVAAFGLVTLLFVYALVANII
                     EKPDGIVISLAFIAGMVVISLVSRLSRATELRTDDIEFDDLAAQFIRDSVEHGELHII
                     ANKRQAGDLAEYHDKEKEQRDLNPIPPRASVAFLEVDVTDPSEFSRVLQVRGIEVNGY
                     RVLRTQSPAVPNALAAILLRIRDETGVRPHLHFQWSEGNPLAHLLKYILLGRGETAPV
                     TREVLREAEKDLARRPVVHVGG"
     gene            3424..>3758
                     /locus_tag="VF788_15320"
     CDS             3424..>3758
                     /locus_tag="VF788_15320"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX8935525.1"
                     /translation="MRTLIVTEFVTVDGVVEAPGGEQTHPHTGWTIPYGVPELYAYKL
                     QETLEAESLLLGRITYEGFAAAWPQQKGEFADKINTMPKHVVTTTLHELGWNATALTG
                     DIPAAVTSV"
BASE COUNT          614 a         1250 c         1216 g          678 t
ORIGIN      
        1 gcacagtttc ttgcgcacgg ggttgaggga cggcgggatc tcccgttacc gctggatctg
       61 atggtgcagg gtgccgttat cgcgttgctg gcttccttct tcggtctggg tgtgctctgg
      121 cggacccctc ggctgcgtgc gggggccgca ggccgagagt tgccgccggc gatccagcgg
      181 ctggtggaca gcaccgggtt ccgttggctc ttgcgcctgc tgggcctggc ggtaccggcg
      241 tatgccgtcg cgacagctct gctgtcaccc gctggcgcac ccaacccgct gccctacgcg
      301 gtgtatgtgt tgttctgggt agggatcgtc ccgctgtcac tgctgttcgg cccggtgtgg
      361 cggcgggtca acccgctgcg cacgattcac ctgctgctct gcgctctcac ccggattccc
      421 gcggaccgtg ggttgcggtc gctaccgcag tggctgggtt actggccggc cacgctgtcg
      481 ctgctcagtt tcgtgtggtt ggagctggcc gcaccggatc gtgacgcggt cagcgtgctg
      541 ctgctgtatc tcgccggcta cgccaccatc cagctcggtg cagccctgct gttcggcgag
      601 ggctggttca ccaccggcga cggctttgag gtctattcca cactcgtcgc cacattgtcg
      661 cccttcggac gacgcgacga cggccgtctg gtcattcgca acccgctgga cggtgcggcc
      721 acgttcgggc cggccccggg tgctgtcgcc ctgatcgccg tgctgttggg ctctacgttc
      781 ttcgacacca tctccggctc ggtcgagtgg gaccgcgcct tgcagtcggc gccggttgtg
      841 cccaccctga tctccaccgc cggattactg gtcatgatcg gcattgtggg catcacgttc
      901 gtcggcgcga cgttattggc cggtcgtgcc ggcgaccggg gtcgatggcc ggttcccggt
      961 ctgctcgcgc acaccgtcat ccccatcgtg gtgggatacg tgattgcgca ctatttttct
     1021 ttcctgctct tccagggcca ggaggccctc gcccttctct cgaatccgca aggtcgcgat
     1081 gcgcacgttt ccggtgccat caactacggt ctgatcacgg cggcaggtat cgcttttatc
     1141 caggtgatag cggtcatcgt cgggcacgtt ctcgccgtga tcagtgccca cgaccgctcg
     1201 gtcgcgttat tccctcgggc ggacgccgtt gtcgggcagt taccgctcat ggtcttgatg
     1261 gtggggtaca ccgtgggcgg tctgacgctg ctgttcgcgg cgtgagctcc tcgggtcgtc
     1321 aagtcccatt cgcccatgct tgcgctttag ccgcctacgt gaactacagg acggcgggcg
     1381 agatcctttt ccgcttcgcg gagcacctcc cgggtgaccg gggccgtctc cccccggccg
     1441 agcaggatgt acttcaggag gtgcgcgagg gggttgccct ccgaccactg gaagtgcagg
     1501 tgcgggcgca ccccggtctc gtcgcggatc cggagcaaga tcgcagcgag cgcgttggga
     1561 accgccgggc tctgcgtgcg cagtacccga tacccattga cctcgatccc gcggacctgg
     1621 agcacgcgag agaattctga agggtccgtc acgtcgactt ccaggaaagc gacggaggcg
     1681 cgtggtggga tcgggttgag gtcccgctgc tccttctcct tgtcgtgata ttcggccagg
     1741 tcgcctgcct ggcgcttgtt cgcgatgata tgcagctctc cgtgctcgac gctgtcccga
     1801 atgaactgag cggccaggtc gtcgaattcg atgtcatcgg tgcgcagctc agtcgcccgg
     1861 ctcagccgcg ataccaggga gatcacgacc attccggcga tgaacgccag cgagatcacg
     1921 atgccatccg gtttctcgat gatgttcgcc accagtgcgt agacgaacag cagcgtgacc
     1981 agcccgaaag cggcgaccgc gccggctcgc cgacgcctcc gcgcagacat ggtgaccgcg
     2041 gccgccgccg acaccatcat ggccaggatg cccgtcgcgt aagcgccggc ctgggcgtcc
     2101 acgtcggcgt ggaacaggat cgtgatgacg atcgcgaccg tcgtgtagac gagcacaacc
     2161 ggccgtaccg cgcgagacca ttccggggcc atcccgtagc cgggcaggta gcgcggcacg
     2221 atgttgatca gtccggccat cgcggacgct ccggcgaacc acagaatgac gatggaactc
     2281 acgtcgtaga ccgtcccgaa ggcatcaccc agcaactcat gcgcgagata ggccagggcg
     2341 cgaccgttgg cccgcccgcc ctgcctgaat tcgtccgggg ggatgagaac ggtggtgacg
     2401 aagctgatcg tgatgaggta accactcatg atcacggcag cgacggtcag cagcttgcgg
     2461 gtgttggcga tccgggcgcg cagccgctcc tgctcgtcct gaccgtcggc ccggaccagc
     2521 ggcatcatgc tcacccccgt ctcgaacccg gacaggccga gcaccagcga cggaaatgcc
     2581 aggaacgccg tcagggccac atcggccggg ccgccactgc tcagcagggc ctccagccac
     2641 cgctgcacca ccaccggctc gccgacgctg cgcaccagcc cgaccaccac gacgaccgcg
     2701 ttcaacagca ggaacaccgc aaccagcggc accgccactc tgacggcctc gctgaaaccg
     2761 gccaggaaca ccgcacccag cacaaccagc agcgcaatgg tgatcagcac cttatggccg
     2821 gtgagcaact ctggggcgaa ctggttctcc gcgacgtgca cggcggcgtc cgccgacgac
     2881 agggtgatcg tgatgatcca ggacgtcgca acgaagccga gcagtgtcag tacgaagaac
     2941 ttcccgcgcc agaacggcaa caggcgctcc agcatggcca ccgaaccctg cccgttcggg
     3001 ctttctgccg ccactcgccg gtacatcggc agcatcccga acagggttaa caacacgatc
     3061 agcagcgtgg ccaatggtga tacggctcca gcggccagcg cggcgatgcc aggtaggtaa
     3121 cttaaggtgg agaagtagtc caccccggtc aggcacatca ccttccacca cgcgtgctcc
     3181 tcgtggtggg cctccctcgt cgccgggccg ggaacagatt ccacccggtg atgcagtaac
     3241 cacgcggtga gccggcgcgg tcgcgaggca ggtggcgaaa gggccatcct cgattatctg
     3301 cgcggccggc ctcagccgga tcgcttgggg gccggatcgc gccgccggca cgggagctgg
     3361 gtttgttgag ttgcccggca aatgggtcta gcccctgatc acggcagact gagaggatct
     3421 tgaatgcgta ccttgatcgt tactgagttc gtcacggtcg acggggtggt ggaggcaccg
     3481 ggcggcgaac agacgcaccc gcacaccggc tggaccatcc cgtatggcgt gcctgagctg
     3541 tacgcctaca aactccagga gaccctcgaa gccgagtcac tgctactcgg gcggatcacc
     3601 tacgagggtt tcgcggcagc gtggccgcaa caaaagggcg agttcgccga caagatcaac
     3661 acaatgccca agcacgtggt cacgacgacg ttgcacgagc tcggatggaa tgccaccgcg
     3721 ctcaccgggg acatccccgc cgccgtgacc agcgtgaa
//
LOCUS       DASVXZ010000723         5589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1605766, whole genome shotgun sequence.
ACCESSION   DASVXZ010000723 DASVXZ010000000
VERSION     DASVXZ010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5589
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1605766"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..553
                     /locus_tag="VF788_15325"
     CDS             <1..553
                     /locus_tag="VF788_15325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005452820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEX8935526.1"
                     /translation="DTVKPSSAQAVRLLRDLGLNPILVTGDNETVARAVAAEVGIDTV
                     IAGVLPEGKVEEVRRLQRSGRVVAMVGDGVNDAAALAQADLGLAMGTGADAAIEASDL
                     TLVRGDLRVAADAIRLSRRTLRTIQGNLFWAFGYNLAALPLAAAGLLNPLIAGAAMAF
                     SSVFVVSNSLRLRGFRPLTPSAL"
     gene            complement(594..1019)
                     /locus_tag="VF788_15330"
     CDS             complement(594..1019)
                     /locus_tag="VF788_15330"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010230081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEX8935527.1"
                     /translation="MSTLFSRIIEGEIPGRFVWRDERCVAFLTISPLRPGHALVVPRH
                     EVDEWTDAPEDLLTHLMMVAKHIGAAQKAGFDAPRAGVVIAGFEVPHLHVHVFPAWNI
                     GDFDFDKADHDPSPDALDAAADTLRQALRQAGHGDQVSN"
     gene            complement(1085..1513)
                     /locus_tag="VF788_15335"
     CDS             complement(1085..1513)
                     /locus_tag="VF788_15335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935528.1"
                     /translation="MIVPVQVLVDADNLDVPRLRLLVAALDTSSSAEVVVAGAPAALD
                     AIDWPPRAQVLSASGWQGADLLLARAYRADGRPLLLASGDGDFAQLARRHPGPVLLVS
                     GTASRSRTLTGPRITPTDPAADGGAALRSWLTSWEQNAGR"
     gene            2122..2610
                     /locus_tag="VF788_15340"
     CDS             2122..2610
                     /locus_tag="VF788_15340"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX8935529.1"
                     /translation="MPTFDAEAVDCRVSVFVDGMASSFGHDATLKVTSLSVDIGEDDG
                     ITADFDAGSLRVINDISDSNRRDIERNAEKTLEPRKYPKIQFRSVSVVRDGDRARVEG
                     DLTLHGVTQQISLDAHDDGRQWNAKVVLDQRKFGIKPFSAMLGALKIKPNVEVNITVP
                     HP"
     gene            complement(2607..3449)
                     /locus_tag="VF788_15345"
     CDS             complement(2607..3449)
                     /locus_tag="VF788_15345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8935530.1"
                     /translation="MAVDGNPDASASCHLSQPTEPILVATGLHYSYLDRYPALNDVSV
                     EIRRGERVALLGANGCGKSTLLKVLDGLIFPAKGAYCAFGQEVTEDTMEDVQMSEGFR
                     SRVGFVFQNSDAQVFSPTVREEIAFGPLQLGLSREDTTGRVEDVTAMLGITDLLDRAP
                     YQLSGGQKKKVAIATVLVMGPEVLLFDEPTAALDPRTQYWLMDLIEQLGQSGKTIVHA
                     THDLNALHRIADRCVVFSEDHTIVAEGTPEQTLADRDLLLGVNLIHEQSILPRLRSGP
                     AGCV"
     gene            complement(3439..4398)
                     /gene="cbiQ"
                     /locus_tag="VF788_15350"
     CDS             complement(3439..4398)
                     /gene="cbiQ"
                     /locus_tag="VF788_15350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0032778 - P-type cobalt transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt ECF transporter T component CbiQ"
                     /protein_id="HEX8935531.1"
                     /translation="MTDAQANAASSQRDRPVVPQWLLQQDMAMCPCGCIGKRKRGSYL
                     TKTIQGGSKLLQQVMFGEDVATARGLLQRIDPRVKLLSLIGLLVVAGLSHSMIALGVM
                     YAATIVLASASALPVSFFIKRVWLFVPIFTGIVVLPATLSVVTPGDIVLTLWHWNGDP
                     QGFTQQGLVAAGRVVARVAVSISLVVLLTLTTPWIRLLAALRSLGVPRIFILIIGMAY
                     RYIFLLLTSVTDMYQARQARTPGTPKHDRSARAFLGASVGALLGKASQLSEEVHQAMT
                     ARGFRGEAKTLEIHQPRAIDAYYVFAVVIFGMAILIGDHLLGR"
     gene            complement(4395..5492)
                     /gene="cbiM"
                     /locus_tag="VF788_15355"
     CDS             complement(4395..5492)
                     /gene="cbiM"
                     /locus_tag="VF788_15355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transporter CbiM"
                     /protein_id="HEX8935532.1"
                     /translation="MHIPDGYLSPQTCLVGFVVAVPVMAAAAAKVHKRVKTRNVPTLA
                     VLAAVCFLIMMFNVPIPDGTTAHAVGGTLVAILLGPWAAVIAVSVALAFQALLFGDGG
                     VLAYGANVVNMAIVLPFVSYGLYRLISGNAHLTSSRRVIAGFIGGYVGLNVAAVCVGI
                     ELGIQPTLFHDAHGAPLYSPYHMSQAIPAMLFAHLLVAGLAEGIVTAAVIAYLQRANL
                     PLMQVNHPGVPVDAEAAAAEGSRRRRLRPTVVAGGVMALMVVLTPLGLLAQGTAFGED
                     APEELDLQKLGLSAIPEGLNRYSTFWQKAIFPDYDFAGAATPVVGYLVSAVVGILVVG
                     LAVWIIAKLVALVANRGNATPEPKTSEEVRS"
BASE COUNT         1061 a         1759 c         1793 g          976 t
ORIGIN      
        1 cgacacggtg aaaccgagca gtgcccaggc agtacgcctg ttgcgcgatc taggattgaa
       61 tccgattttg gtcaccggtg acaacgagac tgtcgcccgc gccgtggccg ccgaggtcgg
      121 gattgacacc gtgatcgccg gggtgctgcc cgaggggaag gtcgaggagg tccgccgtct
      181 acagcgcagc ggccgggtcg tcgcgatggt cggcgacgga gtcaacgacg ctgccgcgct
      241 ggcacaagcc gatctggggc tggccatggg caccggtgct gacgccgcta tcgaggccag
      301 cgacctcacc ctggtacgcg gcgacctgcg agtggccgct gatgcaatcc ggctctctcg
      361 gcgcaccctg cgtaccattc agggcaattt gttctgggca ttcggataca acctcgctgc
      421 gttacccttg gcggcggcgg gtctgctcaa ccccctgatt gctggggccg cgatggcgtt
      481 ctcctcggtg tttgtggtct ccaacagcct gcggctacgc ggttttcgcc cgctcactcc
      541 ctcggccttg tgagcgcagc ggaaacagca agatcaaaag gccacggtag ctgtcagttc
      601 gatacctgat cgccgtgtcc tgcctggcgc agggcctggc gcagggtgtc cgcggcagcg
      661 tccagcgcat ccggggacgg atcatggtcg gccttatcga agtcgaagtc gccgatgttc
      721 cacgccggga agacatgcac atgcaagtgc ggaacctcga atccggcgat caccactccg
      781 gcgcgtggtg cgtcgaaacc ggccttctgc gcggcgccga tgtgtttcgc gaccatcatg
      841 agatgagtca gcagatcttc tggcgcgtcg gtccactcgt cgacctcatg ccgggggaca
      901 accagcgcgt gcccgggccg cagtggtgag atggtgagaa acgcaacgca gcgttcgtcg
      961 cgccagacga accgccccgg gatttctccc tcgataatgc ggctgaacag tgtcgacaca
     1021 actgacctcc ggttcctcgg gactcgtccc cgtgtgctgg aaacagactg cactaactcg
     1081 ccggttacct acctgcgttc tgttcccagg acgtgagcca ggagcggagc gctgcaccgc
     1141 cgtcagcagc cgggtcggta ggggtgatgc gggggccggt gagggtgcgg gagcggcttg
     1201 cggttccgct gaccaggagg accggacccg gatggcgtcg cgccaattgc gcgaaatcgc
     1261 cgtcgccact ggccagcagc agcggccggc catcggcacg gtaggcgcgg gccagcagca
     1321 ggtccgcgcc ttgccagccg ctggccgaca gaacctgagc gcgtgggggc cagtcgatgg
     1381 catcgagcgc ggccggcgcc ccggccacca cgacctcagc agaggagctt gtgtccagtg
     1441 ccgcgaccag caggcgcagc cggggcacat caaggttgtc cgcgtcgact agtacctgca
     1501 cgggcacgat catgcaccag ctcccttggg cagcgttgcc cgcacatacg atctcttgtg
     1561 cgaagctgca ccggtgcggc ttaccggatt ggacacggcc ttcctgagcc tgatcgcgat
     1621 gtgtcaccga tgcatctcgg cgcgttggcg accttccgac cagttcgcct aggcggtccc
     1681 ggacgagtgg ccgccttgct cgcccggcgg gcccagcgcc tgccgcaact acgccgacga
     1741 gtgcaaccac cgtggttccc gctggctgcg gcgagctggg aagacgatct ggaattctgc
     1801 gccaaggatc atatccacgt gcactacctc ggctgtcaca gcagccttga ccgggcagca
     1861 tccttggccg ccgagggttt tcctgatagc accactagta gccggccagg ccttggttgt
     1921 cggactttcc tggtaccaag gccgcgccta cgtggccttg aacgccgatc gggacggtcg
     1981 gccggacgtg caacagctcg ccgaggctat ccagccggcg gcaagtgggc tgggcagcct
     2041 aaacgagtga acgactcggc ccctggtggc acttcgggtg aatgtcggtg acttcgtatc
     2101 ttgggaggct aggctcaccg ggtgccaact ttcgacgctg aagcggtgga ctgccgggta
     2161 tcggtctttg tggatggaat ggcgagttcc ttcggccacg acgcaaccct gaaggtgacg
     2221 agcttgtccg tggacatcgg ggaggatgac gggataaccg cggacttcga cgcgggttcg
     2281 ttgcgagtga tcaacgacat ctcggattcg aaccgtaggg acattgagcg caacgccgag
     2341 aagacgctcg aaccccgcaa gtatccgaag atacagtttc gctctgtctc cgtggtgcgt
     2401 gacggcgacc gtgcacgcgt cgagggcgac ttgacgctgc atggcgtgac gcagcagatc
     2461 tcgctcgacg cgcacgacga cggtcggcaa tggaacgcca aggttgtcct ggaccagcgc
     2521 aagttcggca tcaagccgtt ctccgcgatg ctcggtgccc tcaagattaa acccaacgtc
     2581 gaggtgaaca tcaccgtccc gcatccctaa acgcagccgg ctggtcctga tcgcaggcgg
     2641 ggcaagatgc tctgctcgtg gatgaggttc acacccagca gtagatcccg gtcagccaat
     2701 gtctgctcgg gagttccttc ggcaacgatc gtgtggtcct cgctgaaaac aacacaccgg
     2761 tccgcaatcc ggtggagggc gttcaggtcg tgcgtggcat ggacgatggt cttaccgctt
     2821 tgaccgagct gctcgatcag gtccatcagc cagtactggg tgcgggggtc cagcgcagcg
     2881 gtgggctcgt cgaacagcag cacttcagga cccatgacca gcacggtggc gatggctacc
     2941 ttcttcttct gaccgccgga gagctggtat ggggcgcggt caagtagatc ggtgatgccg
     3001 agcatggccg tgacgtcctc gacgcggcct gtggtgtcct cccgggacag gccgagctgg
     3061 agaggaccga acgcgatctc ttcacgcacc gtgggcgaga aaacctgggc atcggagttc
     3121 tggaagacga agccgacgcg ggatcggaag ccttccgaca tctggacatc ttccatggtg
     3181 tcctcggtaa cctcttgacc gaaggcacag taggcgcctt tggcggggaa gatgaggcca
     3241 tcgagcacct tgagcaaggt cgacttgccg cagccgttcg ccccgagcag tgccacccgt
     3301 tcaccgcgcc ggatttcgac tgacacatcg ttgagagctg gatagcggtc gaggtacgaa
     3361 tagtgcaggc cggtcgcgac caggatcggc tcggttggtt gggagagatg gcacgacgcg
     3421 ctcgcgtcag ggttgccgtc aacggccaag aaggtggtct ccaatcaaga tcgccatacc
     3481 gaaaatgacc actgcgaaca cgtagtaggc atcgatggcg cgcggttggt ggatctccag
     3541 ggtcttggcc tctccgcgaa agccgcgggc ggtcatggct tggtgtacct cctcagacag
     3601 ctggcttgcc ttgcccagca atgcgcccac gctcgctccc aggaacgccc gtgcgctgcg
     3661 atcatgtttc ggcgtgccgg gggtacgggc ctgacgcgcc tggtacatgt cagtcaccga
     3721 ggtcagcaac aggaagatat atcggtaggc cataccgatg atcaggatga atattcgggg
     3781 gacgcccaag ctgcgcagtg ccgctagtaa ccggatccag ggtgtggtca gcgtcagcag
     3841 caccaccaaa gaaatcgaca cggcgaccct ggccaccacc cgccctgccg cgacgagtcc
     3901 ctgctgagtg aatccctgcg gatccccgtt ccagtgccac agggtcaaga cgatgtcccc
     3961 aggggtcacc accgacaggg ttgcgggcag caccacgata ccggtgaaga tcggcacgaa
     4021 cagccacacc ctcttgatga aaaagctgac cggcagcgcc gaagccgacg cgagaacaat
     4081 cgtcgccgca tacatcaccc cgagggcgat catcgaatgg ctgagtccgg caacgacgag
     4141 caagccaatc aggctgagca gcttgacccg tgggtctatc cgctgcagga gaccccgtgc
     4201 ggtcgcgacg tcctcgccga acatcacctg ctgaaggagc ttggagccgc cctggatggt
     4261 cttggtcagg tagctgcctc tcttgcgctt gccgatgcag ccacagggac acatggccat
     4321 gtcttgttgc agtaaccact gcggcacaac cgggcgatcc cgttgggagg atgccgcatt
     4381 agcttgcgca tcggtcacga tcgcacctct tcagaggtct taggttcagg ggtggcgtta
     4441 ccgcgattgg ccaccagtgc gaccagcttc gcgatgatcc acaccgccaa cccgaccacc
     4501 agaattccga cgacggcaga gacgaggtag cccacgactg gggttgccgc gccggcgaag
     4561 tcgtagtcgg ggaagatcgc tttctgccag aacgtgctat atctgttcaa tccctccggt
     4621 atcgcggaca gaccgagttt ctgtaggtcc aattcctccg gcgcgtcctc gccgaatgcg
     4681 gtgccctgtg ctagcagacc cagcggagtg agcaccacca tcagagccat cacaccgcca
     4741 gccaccacgg tggggcgcag ccgccgccgg cgagatccct ctgctgccgc agcctcggcg
     4801 tcgaccggta ccccaggatg gttaacctgc atcaacggca gattggcccg ctgtaggtag
     4861 gcgataaccg cggcggtaac gatgccctcg gcgagcccgg caaccagcag atgagcgaac
     4921 aacatcgcgg gtatcgcctg cgacatgtga tagggcgagt aaagcggggc tccgtgggcg
     4981 tcgtggaaca gagtcggctg gatccccagc tcgatgccca cacacacagc ggcgacgttg
     5041 agaccgacat acccgccgat gaatccggcg atgacccggc ggctgctggt caggtgggca
     5101 ttgccggaga tcaaccggta aagaccgtag gagacgaagg gcagcacgat cgccatgttg
     5161 accacgttgg cgccgtaggc cagaacgcca ccatcaccga agagcagcgc ttgaaacgcc
     5221 agagccacac tgaccgcgat taccgctgcc cacggtccga gcagtatcgc cactaaagtt
     5281 ccgcccactg cgtgggccgt ggtgccatcg ggtatcggca cgttgaacat catgatcagg
     5341 aaacagacgg cggcgagcac ggccaacgtc ggcacattgc gggttttcac ccgcttgtgg
     5401 accttggctg cggctgccgc catcaccggg actgccacca cgaagcccac caggcaggtc
     5461 tgtggactca ggtaaccatc gggaatatgc acggtcaccc tccggttgcg ccagatgcca
     5521 cccctccgtt aaagcaactt acgcgcagca gctcctgggc ggcatatttc ccgatcgggt
     5581 tacacctga
//
LOCUS       DASVXZ010000724         2308 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_709055, whole genome shotgun sequence.
ACCESSION   DASVXZ010000724 DASVXZ010000000
VERSION     DASVXZ010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_709055"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..921
                     /locus_tag="VF788_15360"
     CDS             <1..921
                     /locus_tag="VF788_15360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935533.1"
                     /translation="APLGPVAYYLGLLAANLSRVDAAAGHFEVALQAAERIGSRPYLA
                     LAQGAYGAMLARRDTSLDRPRATQLLANALKTAKELGMRQLCADVVAAQAGLPANAGI
                     EQTRSCVSAEDSSVAAVFRSEGEYWTIGFQRTVVRIKDAKGLHHLRRLLAAPGREFHV
                     LDLAAGTTPLLHRTPSQELEAYPVAGVEGDNLLDPAAKAAYRARIEDLRQDVEEAEEH
                     HDLERAARARAEMDFIVAELASAMGLGGRDRKAASPGERARSAVSKSLRTCLKRIENA
                     HPALGAHLATAVRTGYFCSYKPELPIKWQT"
     gene            1079..1510
                     /locus_tag="VF788_15365"
     CDS             1079..1510
                     /locus_tag="VF788_15365"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX8935534.1"
                     /translation="MGRAADVLRQELAAASAQDVKALTASWTHDCKKWIPGAYLQGVD
                     QVVAWDEALWEAFPDFQVIPTQMVEEGSALGFHGRVTGTHQGTLRTPSGNIPATGRRV
                     DFTVGGVCEIEGNQIASMHLHFDRLEILEQLGVAAAPAPAA"
BASE COUNT          446 a          752 c          728 g          382 t
ORIGIN      
        1 gcccccctgg ggcccgtggc ctattacctg gggttgctcg ccgcgaacct gtcccgagtt
       61 gacgccgccg ccggacactt cgaggtcgcc ctccaagccg cggaaaggat cggctcgcgc
      121 ccgtacctcg cgttggctca aggggcatac ggtgccatgc tcgcccgccg ggacacgagc
      181 ttggatcgtc cacgagcgac ccagctgctc gcgaatgcac tgaagactgc caaggaactc
      241 gggatgcgac agctttgcgc ggacgtggtc gctgcccaag ctggcttacc tgccaacgca
      301 gggatagagc aaacgcgatc ctgcgtgtct gccgaggatt cctctgtcgc cgccgtgttc
      361 cgcagcgagg gtgagtactg gaccatcggc ttccagcgca cggtcgttcg catcaaggat
      421 gccaagggac tgcaccacct gcggagattg cttgccgcgc ctggccgcga gtttcacgtt
      481 ctcgacctcg cagcaggaac cacgccattg ctgcaccgaa ccccgagcca ggagctcgag
      541 gcttacccag tggccggagt cgagggggac aatctactcg acccggcggc aaaggcggcc
      601 tatcgggcca ggatcgaaga cctccgccaa gatgtcgagg aggccgaaga gcaccacgat
      661 ctggagcggg ccgcccgggc acgggcagag atggacttca tcgtcgcaga gctcgccagc
      721 gcgatggggc tgggcggacg ggacaggaag gccgcctcgc ccggagagcg agcgcgctcg
      781 gctgtgagca agtcgctccg cacctgcctc aaacggatcg agaacgccca cccagcgctc
      841 ggggcacatc tggcgacggc agtcaggacg ggctacttct gttcctacaa gcccgagctg
      901 cccatcaagt ggcagacctg acaggaccgg ccccatggcc tcgagagtga tcatgcacag
      961 tgcgggctga cctcaccccc tcgggatgtg acctggttct tcccggatgt gacttacttc
     1021 ttcccgccta cccatccaga agccgctgat cgccagcggg ctggaggaag gagtaaagat
     1081 gggaagggca gcagacgtgt tgcgtcagga attggcggca gccagtgcgc aggacgtcaa
     1141 ggcgcttacc gcgtcctgga cccatgattg caagaagtgg atccctggag cctacctgca
     1201 gggagtagat caggtcgtgg cctgggacga agctctttgg gaggcgttcc ctgatttcca
     1261 agtaatcccg acgcagatgg tcgaggaggg ttcggctctc ggcttccacg gccgcgtcac
     1321 cggaacacat cagggaacgc tgcgaactcc cagtgggaac attcccgcca ccggacggcg
     1381 cgtcgacttc acggtcggag gggtctgcga aatcgaaggc aaccaaatcg cctcgatgca
     1441 cctgcacttc gatcggctcg agattctgga gcagctgggc gtagcagccg ccccggctcc
     1501 cgccgcgtaa tgagctaacc aaccactgca cgaggaggtg ccttacttgc gagtcaaggc
     1561 acctcctcct acgccgtccc aagggtggcc caggaaatcc gtggcagccg ggcaacggag
     1621 gaaccgcgag gcaagcggtt cgctacggcg ccagcggccc ggcgacgtgg atcagcgtgc
     1681 cgccaggtac agccgggcgc aacagcgccg agctgagggc ttactgcgtc ccacagtgca
     1741 cggcagtatg cgccgcgcgc tacggggctt gcggcgagag gccacgtatt ctcgccgccc
     1801 ggccacgtat ctgctgacac acaaatttaa attacccggc actgcagtta ccattggtga
     1861 tggattaagt cgcagggggg aacgatgcgt cttacgaacc accgccttgc cgtcattggc
     1921 ggcgtagcct gctcagccat gttattcacc agcacagcga ccggtgctca ggctgcacta
     1981 tccagcagcc tagctggtga ctcccaacta tccggatcag cagtcgcgat ttccgtggcc
     2041 atccccgcgg gttggcacca gctggtcgat caagatcacc ctcaactgct gcagatggtg
     2101 tatcccgaaa cctgcttaca gggacctcag tgcgcatccg gggtagcgcg ccttgttagt
     2161 ggccaggccc ccagcgccca ggccgcagcc tcaggcgctg aacagaagat cgctagcctg
     2221 tccggcgtcc aaggtgtcag cgttaccagt gagggaccca cgcagatcgc cggccacagc
     2281 ggctaccagc tgcactttgt ctacacct
//
LOCUS       DASVXZ010000725         1585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1248093, whole genome shotgun sequence.
ACCESSION   DASVXZ010000725 DASVXZ010000000
VERSION     DASVXZ010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1248093"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..>1585
                     /locus_tag="VF788_15370"
     CDS             5..>1585
                     /locus_tag="VF788_15370"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8935535.1"
                     /translation="MVDRTPMLRSAVHWQEVDEPLQVVHRHVELPIAYHDWRGLSERD
                     REQELAQITPQERAGVNLNVLPLLRLVIARLPDDEVLLVWTVHHVLLDGWSAALVFEE
                     VCEQYAAIVADRAPQLVTRRTFRDYLQWLEEQDRDKAEQHWRAVLSGFDSATPLPYDR
                     PPRQAHRSESTESVEVQLGAQDTTRLHQVAGRNGLTVNTIVQGAWALLLSRYSGQRDV
                     VFGTTVSGRPAELAGVESMIGMFVNTVPTRVQIDDAQNLVPWLQELQAAQIDSRRFDF
                     VSLAQVQTYCELPAATTLFESMVVFENYPFDSASVAQAGLRVPEVRTVETTNFPLSLQ
                     ASLDDRLGLALAYDPQLFDAPTVEAMTQRLQLLLARLAADPDQRVGELSLLTETERRQ
                     LLVQWNDTERQVPPVLWSELFAAQVARTPDAVAVISSHGAQLSYRELSERANRLARLL
                     IRRGVGPEQFVGLALPRSVDLIVALVAVWRAGAAYVPLDPNYPPARIALLCSDADPVV
                     VLTADETAEYLPVDVVSLV"
BASE COUNT          251 a          485 c          549 g          300 t
ORIGIN      
        1 acgagtggtc gatcggacac cgatgctgcg cagtgctgtg cactggcagg aggtggacga
       61 gccactgcag gtggtgcacc ggcacgttga gctaccgatc gcctatcacg actggcgggg
      121 cctctccgaa cgggatcggg agcaggaact ggcgcagatc accccgcagg aacgcgccgg
      181 ggtgaatctc aatgtcctac ctctgcttcg gctggtcatc gcgcgcttac ctgacgatga
      241 ggtcctgctg gtgtggactg tgcaccacgt gctgctggac gggtggagcg cggcgctggt
      301 gttcgaagag gtgtgcgagc agtacgccgc catcgtggcg gatcgggcac ctcagctcgt
      361 cacccggcgc accttccggg actatctcca gtggctcgaa gagcaggacc gagacaaggc
      421 cgagcagcat tggcgtgcag tgctgtccgg gttcgactcg gctaccccgc tgccttatga
      481 ccggccaccg cgccaggcac accgatcaga atccacggag tcggtggagg tccagctcgg
      541 tgcccaggac accacccggt tgcatcaggt ggccgggcgc aatggcctga cggtgaacac
      601 gatcgtgcag ggcgcgtggg cgttgctgct gtcccgctac agcggtcagc gcgatgtggt
      661 gttcggaacc accgtctccg ggcggcccgc tgagctggcc ggggtggaat cgatgatcgg
      721 catgttcgtc aacaccgtgc cgacccgggt gcagatcgat gatgcgcaga atctggtgcc
      781 gtggttgcag gagctgcaag ccgcgcagat cgactcccgc cggttcgact tcgtctccct
      841 cgcgcaggtc cagacctact gcgagttgcc cgccgctacc actctgttcg agagcatggt
      901 cgtcttcgag aattacccct tcgactccgc gtcggtcgct caggcgggcc tgcgcgtgcc
      961 cgaggtccgg actgtcgaaa ccacgaactt cccgttgagc ttgcaagcct ctctcgacga
     1021 ccggctcggg cttgcgctgg cctacgaccc acaactattc gacgcaccca cggtcgaggc
     1081 gatgacgcag cggttgcaat tgctgctggc ccggctcgcc gccgacccag accagcgcgt
     1141 cggcgagctt tcactgctga ctgagaccga gcggcgtcag ttgttggtgc agtggaacga
     1201 caccgagcgt caggtgccgc cggtgctgtg gtcggaactg ttcgccgcgc aggtggcccg
     1261 aacgccggac gccgtggcgg taatcagcag tcatggtgca cagctgtcgt accgggagct
     1321 gagtgagcgg gcgaatcgac tggcccgatt gttgatcagg cgaggtgtgg gtccggaaca
     1381 gttcgtcggg ttggcgttgc cccggtcggt ggatctgatc gtggcgttgg tggcggtgtg
     1441 gcgcgcgggc gcggcgtacg tgcctcttga tccgaactat ccaccagcgc ggatcgcgtt
     1501 gttgtgctcg gatgctgacc cagtcgtggt cttgaccgcc gacgagacag ctgagtactt
     1561 gccggtggat gttgtgtcac tggtg
//
LOCUS       DASVXZ010000726         6237 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_441685, whole genome shotgun sequence.
ACCESSION   DASVXZ010000726 DASVXZ010000000
VERSION     DASVXZ010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6237
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441685"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..900)
                     /locus_tag="VF788_15375"
     CDS             complement(<1..900)
                     /locus_tag="VF788_15375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEX8935536.1"
                     /translation="MDVIVLVVIITALAFDFTNGFHDTANAMATSIATGALKPKTAVA
                     ISGVLNLVGAFLSVAVAKTISSGLVDDTKITPAVIFGGLIGAIVWNLLTWYLGLPSSS
                     SHALFGGLIGATWVAAGADAVHFGTVVSKILVPAVLAPIIAGVVALVGTYLAYRITAR
                     ADHDTVSSGFKVGQVVSASMVSLAHGTNDAQKTMGIITLTLVTVGTLAPGSAPPFWVI
                     LSAGTAIALGTYLGGWRIIRTLGKRITEIETPQGFAAETSSTAVILVSSQLGYPLSTT
                     QVCSGAIFGAGAGRRLAEVRWGLA"
     gene            complement(981..1676)
                     /locus_tag="VF788_15380"
     CDS             complement(981..1676)
                     /locus_tag="VF788_15380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HEX8935537.1"
                     /translation="MDPAKLIEKILPIGVASAEAFDDPPDAVLYPGEADVISRAVDKR
                     RREFRTVRHCARRALRQLGVPAAAVLPGERGEPQWPAGVVGSMTHCGGYRAAAVAHSS
                     QVRTLGIDAEPHEPLPEGVLDAISLSEERDHLAELAATATATCWDRILFCAKETVYKA
                     WFPLTHRWLGFEDAAVTITLGITDPAEGTFSARLLVAGPTITGAALTRFDGRWLRGDD
                     LVITTIAVTTGQP"
     gene            complement(1658..2665)
                     /gene="add"
                     /locus_tag="VF788_15385"
     CDS             complement(1658..2665)
                     /gene="add"
                     /locus_tag="VF788_15385"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004000 - adenosine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0043101 - purine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEX8935538.1"
                     /translation="MRELRTLPKAHLHLHLTGSARPRTVQELARKYGISLPTELVDNK
                     SDWGEGSQDWSYFQRRYDAARNTIRSAEDLRRIIREAAEDDAADGSRWLELQIDPTSY
                     ARHLNGLEPAVEIMLAACQDAAQVTGIGIVLVLAVSWTASPTCAEDVARVAARHAHRG
                     IVGFGISNDERLGDPDTFVPASQIARNAGLLVVPHAGFYTDHRHVRRCVELLGARRIG
                     HGITAAMNPGTLDFLRRKEITMEICPTSYVPLGVLPTLAQIPVIAFQRAGVPVALGAD
                     DPLIFGTRLTGQYDIVRDVHGLCDGALADLARQSVRASAAPAEVAAQLLTDIDKWIRP
                     S"
     gene            complement(2771..3856)
                     /locus_tag="VF788_15390"
     CDS             complement(2771..3856)
                     /locus_tag="VF788_15390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 172 protein"
                     /protein_id="HEX8935539.1"
                     /translation="MTVNYGPYGSSLRDLPRLRRTRRRRVSSWDRTGGNDDRITLAPG
                     HTATLADIKGAGSINHIWVTVANERMLRDPWMREPDYLRRLVLRAYWDGEAHPSIAVP
                     LGDFFGVGHGRTTNFVSAPLQMSPEDGKGFNCFFHMPFGAGARLEVASELTDETVFFY
                     YYIDYEALDELEDGIGRFHAQWRRSNPCPGVPQASESNAEFLLVGENLDGTANYTILE
                     ATGHGHYVGCVLNIHNLRDTNEWNWYGEGDDMIFIDGEAWPPTLHGTGTEDYFNTAWC
                     PTQTYHAPYHGITLPGGDNWSGQVSLYRFHIEDPMPFERSIRVSIEHGHANKRSDDYS
                     SVAYWYQAEPHMPFDLDPVELRVPRAR"
     gene            complement(3853..5265)
                     /locus_tag="VF788_15395"
     CDS             complement(3853..5265)
                     /locus_tag="VF788_15395"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0051119 - sugar transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HEX8935540.1"
                     /translation="MVAPAFLTRVSTRRVYALGALAAVLFGYDNGIIGAALLFIPRDL
                     PLTPLQEGAVVSATVFGAMVGALGSGPAADRLGRQRILLSAGVVFTVGALGAGAAASV
                     SMLVAFRFILGLGIGIASVIVPLYLAEMAPARERGVVTSLNQYMIIVGTALSAALGYA
                     LAFAGSWRWMLLIGVFPAVVLVVGMLAMPDTPRSLIRRGNPDQARAVLVGLRGDTAET
                     ELEFAEITSLERQQHDSGTLARLSAPWVRKLLLLGALLAIFQQITGINAIVYYAPTIL
                     TGFGVSKTTALLFSFLNGLVNIGTIALVVRSKVVDRRGRKPVLLAGLVGMSASLFAVG
                     VAVLMLPVNSPALFVVAAAAFVVFTNTFSATWGPVLWVMLAEIFPLAIRGAAMAIATL
                     FNWLAAFVISLTFPSFVASAGIGAAFIVFAVVGVVLFPVVWWMVPETKERSLESLEAS
                     FRSSAGIRLTGGAADAGGRA"
     gene            complement(5269..>6237)
                     /locus_tag="VF788_15400"
     CDS             complement(5269..>6237)
                     /locus_tag="VF788_15400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005159248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEX8935541.1"
                     /translation="QCTPMYDPVEHRWIGEWIELIAPGLELPELCWPSEVVGEVQATV
                     AEQTGIPAGTPVVAGTIDAWAEATSVGVTAPGDAMLMYGTTMFLVEVLDRARRSPDLW
                     GTVGTFPGTHNFAAGMATSGAITDWIRKLTGELSFDPLIAEAQQSPPGACGLLMLPYF
                     AGERTPLFDPDARGVLAGLTLRHNRGDIYRAALEATAYGVRHNLQAMRDAGGQGRRLV
                     AVGGGTKGGLWTQIVSDVLNTPQQLPRQTIGASLGDALLAAIGIGQVPEMAQWNPLSS
                     TTEPCPESTQIYERYYALYRELYPNTRRIAHLLAREQRMDSPEHRR"
BASE COUNT         1144 a         1996 c         2021 g         1076 t
ORIGIN      
        1 ggccaggccc catcgcacct ccgctagccg acgacccgcc cccgcaccga agattgcacc
       61 cgagcacacc tgcgtggtcg acagcgggta tcccagctgg gaggagacca ggatgactgc
      121 ggtgctgctg gtctcggctg cgaatccctg cggcgtctcg atctcggtga tccgctttcc
      181 gagcgttctg atgatccgcc acccgcccag gtaggtgccc agggcgatgg ccgtccccgc
      241 ggagaggatc acccagaacg ggggtgcgga cccgggtgcc agcgttccga cggtgaccag
      301 ggtcaacgtg atgatgccca tcgtcttctg cgcgtcgttg gtaccgtgtg ccagggacac
      361 catcgaggcc gagaccacct ggccaacctt gaaaccgctg cttaccgtgt cgtggtcggc
      421 tctcgcggtg atccggtagg cgagataggt gccgaccagc gcgaccaccc cggcgatgat
      481 cggtgccagc accgcgggaa ccagaatctt cgacaccacc gtgccgaaat gaaccgcgtc
      541 ggcgcccgct gccacccagg tggccccgat caggccgccg aacagcgcgt gtgaggagct
      601 ggacggcaga cccaagtacc aggtcagcag gttccacacg atagccccga tcagtcctcc
      661 gaagatcacc gcgggggtga tcttggtgtc atcgaccaat ccgctggaga tggtcttggc
      721 gactgctacc gagagaaatg cgccgactag gttgagcaca cccgagatgg ccacggcggt
      781 cttcggtttc agcgcgccgg tggcgatcga ggtcgccatg gcgttggcgg tgtcgtggaa
      841 gccgttggtg aagtcgaacg cgagggccgt gatgatcacg accaggacga tgacgtccat
      901 ttcgtccttt atcgtcgagg ggtagagcgg ttcgagcgtc gcagatcaag ccaaacacct
      961 ggtgaactcg acgtgtccag tcagggttgc ccggtggtga ccgcgatcgt ggtgatcacc
     1021 aggtcgtcgc cgcgtagcca gcgaccgtcg aatcgggtca gcgctgcgcc ggtgatggtc
     1081 ggtccagcca ccaacaggcg ggcggagaaa gtgccctccg ctggatcggt gatgccaagt
     1141 gtgatcgtga cagccgcgtc ctcgaatccc aaccagcgat gggtcagcgg gaaccacgcc
     1201 ttatacaccg tctccttggc gcagaacagg atccggtccc agcaagtggc cgtggcggtg
     1261 gcggccagct cagccaggtg gtcccgctcc tcgctgagac tgatcgcgtc caataccccc
     1321 tcgggcaacg gttcgtgcgg ttcggcatcg attcccagag tccgcacctg ggagctgtgc
     1381 gcgacggcgg cggcccgata gccaccgcag tgggtcatgc tgccgacgac gcctgctggc
     1441 cattgcggct cgccgcgctc gcccggcagc accgccgcag caggtacgcc gagttgtcgc
     1501 agcgcgcgtc gggcgcagtg gcggaccgtg cggaactccc ggcgtcgctt atccacggcg
     1561 cgactgatca catccgcttc tcccggatac aacaccgcgt cgggtgggtc gtcgaaagct
     1621 tctgcgctgg ctaccccgat gggcagaatt ttctcgatca acttggccgg atccacttgt
     1681 caatatcggt gagaagctgt gccgccactt ccgcaggtgc ggcggaggct cgcacggact
     1741 ggcgggccag atcggcgagg gcaccgtcgc agagcccgtg gacgtcacgc acgatgtcat
     1801 actgtccggt cagccgagta ccgaaaatca acggatcatc ggctcccaac gccactggca
     1861 ctcccgcccg ttgaaatgcg atgacaggta tctgggcaag tgtaggaagc acaccgagtg
     1921 ggacgtagga agtcggacag atctccatgg ttatttcttt acggcgcagg aagtccagcg
     1981 tgcccgggtt catcgctgcg gtgattccgt gacctatccg gcgtgccccg agcagctcga
     2041 cacaccggcg gacgtgacgg tggtcggtat agaaacccgc gtgcggcacc acgagcaaac
     2101 ctgcattgcg cgcgatctga gaagcgggca cgaaagtgtc gggatcaccc agccgctcgt
     2161 cgttagagat accgaagcct acgatgccgc ggtgtgcgtg ccgagctgca acccgcgcaa
     2221 catcttcggc acatgtcggg gacgcggtcc aactcaccgc gagcaccaga acaatcccga
     2281 tgccggtgac ctgggctgcg tcctggcagg ctgccagcat gatctctacc gctggttcca
     2341 gcccgttgag gtggcgcgca tacgatgtcg gatcaatttg cagctccagc catctggaac
     2401 cgtccgcggc gtcgtcttcg gccgcctcgc gaatgatccg ccgcagatct tcggcggacc
     2461 gaatcgtgtt acgtgcggcg tcgtatcgac gctgaaagta tgaccagtct tgggatcctt
     2521 cgccccagtc ggatttattg tcaaccaact cggttgggag gctgatgcca tatttcctgg
     2581 ccaactcttg tactgtacgt ggccgtgcgg agccggtgag atgaaggtgg agatgcgctt
     2641 tggggagggt tcgcaattcc cgcacatcgg cagtgtgcca tccacgcccg ccggtagcac
     2701 gcgtgtggct accccagcgc tgagcgagcg cgcggtgccg gtcaccacct ctccttgccc
     2761 agacggcgcg tcaccgtgcc cgtggaacgc gtagttccac agggtcgagg tcgaagggca
     2821 tgtgtggctc ggcctggtac cagtaggcca ctgaggagta gtcgtcgctg cgtttgttgg
     2881 cgtggccgtg ttcgatgctg accctgatgg atcgctcgaa tggcatggga tcttcaatgt
     2941 ggaaacggta caggcttacc tggccgctcc agttgtcacc accaggcaag gtgataccgt
     3001 gatatggcgc gtggtaggtc tgtgttgggc accacgcggt gttgaagtag tcctcggtgc
     3061 cagtgccgtg gagggtaggc ggccaggctt caccatcgat gaaaatcatg tcatcgccct
     3121 cgccgtacca gttccattca ttagtgtcgc gaaggttgtg gatattcagc acgcagccga
     3181 cgtagtggcc gtggccggtc gcctctagga tggtgtagtt ggctgtcccg tcgagattct
     3241 cccccacgag caggaactcg gcgttactct cggacgcttg cggcactcca gggcatggat
     3301 tgctgcgccg ccactgggcg tggaaacgtc caatgccgtc ctcgagttca tcgagcgcct
     3361 cataatcgat atagtaataa aagaacaccg tctcgtcggt aagttcgctg gcgacctcca
     3421 gtcttgcacc ggcgccgaac ggcatgtgga aaaagcagtt gaaccccttg ccgtcctccg
     3481 ggctcatttg gagcggggcg gagacgaagt tggtggtgcg gccgtgccca accccgaaga
     3541 aatcacctaa gggcaccgcg atactgggat gcgcttcgcc gtcccagtag gcgcggagca
     3601 cgagccggcg caggtaatcg ggttcgcgca tccacggatc gcgaagcatc cgttcgttgg
     3661 cgacggtcac ccagatatgg ttgatgctgc cggctccctt gatgtcggcg agagtcgcgg
     3721 tgtggcccgg cgccaaggtg atgcggtcgt cgttcccacc cgtgcggtcc cagctggaca
     3781 cccgtcgacg gcgggtgcgg cgcagtcgcg gcaaatcccg caggctggat ccatacgggc
     3841 cgtaattgac ggtcatgccc ggcctccggc gtccgcggcg cctccggtca gtcgaattcc
     3901 ggcgctgcta cggaacgacg cttccagcga ttccagactg cgttccttgg tctctggcac
     3961 catccaccac acaaccggga agagcacgac accgaccacc gcaaagacga tgaaggcggc
     4021 acctatgccg gcggatgcga cgaagctggg gaaggtcagt gatatgacga aggcggccag
     4081 ccagttgaac agcgtggcga tggccatcgc cgctccgcga atggcaagcg ggaagatctc
     4141 ggcgagcatc acccacagca ccgggcccca ggtggcggag aaggtgttgg tgaacaccac
     4201 aaacgccgct gccgcgacca cgaacagcgc gggcgagttg acgggaagca tcagtaccgc
     4261 cacaccgacg gcgaacaagc tggctgacat gcccaccaaa ccagccagca ggaccggttt
     4321 gcggcctcgc cgatcaacga ctttggaccg gacgaccagc gcaatggtcc cgatgttcac
     4381 caacccgttg aggaaactga acagcaacgc ggtggtcttg gacaccccga atccggtgag
     4441 aatcgtcggc gcataataca cgatcgcgtt gatcccggtg atctgctgga agatggccag
     4501 cagagcgccc agcagcagca gcttccgcac ccagggggcg gacaagcggg cgagcgtacc
     4561 tgagtcgtgt tgctggcgtt ccagcgaggt gatctcggcg aactctagct cggtctcggc
     4621 ggtgtcaccc cggagaccga ccaaaaccgc gcgtgcctgg tcaggatttc cacgccggat
     4681 cagcgatcgt ggggtgtcgg gcatggcgag catcccgacc accagcacga cggcgggaaa
     4741 caccccgatg agcaacatcc accgccatga gccggcgaag gccagcgcat agccgagcgc
     4801 tgcggacagc gccgtcccta caatgatcat atattggttc agcgaggtca ccactccgcg
     4861 ttcccgcgcc ggagccatct cagcgaggta gagaggcacg atcaccgagg cgatgccgat
     4921 acccaatccc agaatgaagc ggaatgccac cagcatgctg acgctggccg cggctccggc
     4981 acccaaagct ccaacggtga acaccacccc ggccgagagc aggatccgct gccgtcccag
     5041 ccgatcggct gccggcccgc tacccagcgc gccgaccatc gccccgaaga cggtggcgct
     5101 gaccaccgca ccttcctgga gaggtgtgag tggcagatcg cgcgggatga ataacagtgc
     5161 tgccccgatg atgccgttgt cgtaaccgaa cagcaccgcc gccaaagcac ccagcgcata
     5221 cacgcgtcgc gtgctcaccc gggtcaggaa tgcgggagcg accatcagct acctccgatg
     5281 ctctggggaa tccatccgct gttctcgggc gagtaggtgt gcgattcgtc tggtgtttgg
     5341 gtacagctcg cggtagaggg cgtagtagcg ctcgtagatc tgggtggatt cggggcacgg
     5401 ctcggtggtg cttgagagcg gattccactg cgccatctcc ggtacctgcc cgatcccgat
     5461 ggcagccagc agcgcgtcgc ccagggacgc gccgatcgtc tggcgcggca gctgctgtgg
     5521 ggtgttcagg acgtcggaga cgatctgtgt ccatagcccg cccttggtgc cgccacccac
     5581 ggcgaccagt cggcggccct gcccacccgc gtcgcgcatc gcttgtaagt tgtgccttac
     5641 cccgtaggcc gttgcctcca aggcagcccg gtagatgtcg ccccggttat gccgcagggt
     5701 cagcccggcc agcacgccgc gggcatccgg gtcgaacagc ggtgtccgtt cgccggcgaa
     5761 gtagggcagc atgagcaagc cgcatgcccc gggcggcgac tgctgagcct ccgcgatgag
     5821 cgggtcgaac gacaattctc cggtcagctt gcggatccag tcggtgatcg cgcccgaggt
     5881 cgccattccg gccgcgaagt tgtgggttcc cgggaaggtg cccacggtgc cccacagatc
     5941 cgggctgcgg cgcgcacggt caagcacctc gaccaggaac atggtcgttc catacatcag
     6001 catggcgtca ccgggtgcgg tcacgccgac gctggtggcc tccgcccagg catcgatcgt
     6061 gcccgccacc acgggagtac ccgccgggat gccggtctgc tcggcgacgg tggcctgcac
     6121 ctctccgacc acctctgagg gccagcagag ctccggcagc tcgagcccgg gggcgatcag
     6181 ctcgatccac tctccgatcc agcggtgttc gaccgggtcg tacatcgggg tgcactg
//
LOCUS       DASVXZ010000727         7091 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1475585, whole genome shotgun sequence.
ACCESSION   DASVXZ010000727 DASVXZ010000000
VERSION     DASVXZ010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7091
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1475585"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..479
                     /locus_tag="VF788_15405"
     CDS             219..479
                     /locus_tag="VF788_15405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935542.1"
                     /translation="MGFSPVWTREDLFRHAHDHGRWDEETYSRVEPVLRELGTPTRIG
                     DNGQGLVLKLAINISLAVQMLAFCEGLLLAQRDGIDLGWPRR"
     gene            479..778
                     /locus_tag="VF788_15410"
     CDS             479..778
                     /locus_tag="VF788_15410"
                     /inference="COORDINATES: protein motif:HMM:NF026183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEX8935543.1"
                     /translation="MAHSSIGSPMLKARVPLVLDLPDDAWFDVSLMHKDIGLALAAAR
                     ERGVALPSAGVADDMLTRAAELGYQHRDIAALYEVLARGQDLPSGLRVRRPDRAR"
     gene            845..1141
                     /locus_tag="VF788_15415"
     CDS             845..1141
                     /locus_tag="VF788_15415"
                     /inference="COORDINATES: protein motif:HMM:NF015552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935544.1"
                     /translation="MTAFRLAGTPVTSRRAAQRAGTAGTDVPRPGPNWYAAIMGTGIV
                     ANAGAILPLRIPGLRVFATAVWALAAAALIALTAAWAVHWIRFRAGRGGMPPTQ"
     gene            1262..1402
                     /locus_tag="VF788_15420"
     CDS             1262..1402
                     /locus_tag="VF788_15420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935545.1"
                     /translation="MTSRSVHDYPQFIEHCLVQLPLSAGLGHWANANRRDNSSTTVCD
                     HE"
     gene            1516..2340
                     /locus_tag="VF788_15425"
     CDS             1516..2340
                     /locus_tag="VF788_15425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011558697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8935546.1"
                     /translation="MGTITTADGTEIYYKDWGSGQPIVFSHGWPLSADDWDTQMLFFL
                     QHGYRVIAHDRRGHGRSGQVGDGHDMDHYADDLAALTAHLNLTNAIHVGHSTGGGEVT
                     RYLARHGESRVAKAVLISAVPPLMVRTEANPGGLPKEVFDGFQAQVATNRAKFYRELP
                     AGPFYGFNRPGVESSEAIIENWWRQGMMGGAKAHYDGIAAFSQTDFTEDLKKITVPVL
                     VMHGDDDQIVPYANAGPLSAKLLQNGTLKTYEGFPHGMPTTQAETINVDLLAFLKT"
     gene            complement(2583..2864)
                     /locus_tag="VF788_15430"
                     /pseudo
     CDS             complement(2583..2864)
                     /locus_tag="VF788_15430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005437821.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3084..3269)
                     /locus_tag="VF788_15435"
                     /pseudo
     CDS             complement(3084..3269)
                     /locus_tag="VF788_15435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            3535..4215
                     /locus_tag="VF788_15440"
     CDS             3535..4215
                     /locus_tag="VF788_15440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005452539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8935547.1"
                     /translation="MRIVIAGGHGQIAMRLEKLLAQRGDSPVGIIRDPKQAADLRTVG
                     ADPVVCDLESAAVGELASHLDGADAVVFAAGAGSGSGTARKETVDRGAAVLFADAAER
                     AGIRRYVMISAMGADREPSPGTDPVFAAYLRAKGAADTDLAFRAGLDWTILRPGRLTN
                     EPGTGLVQLAVHTGRGAVPRDDVAAVLLALLDTPAAGMTLELVAGNTPVGEAIRTVTS
                     NYRSPAKE"
     gene            complement(4390..4578)
                     /locus_tag="VF788_15445"
     CDS             complement(4390..4578)
                     /locus_tag="VF788_15445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935548.1"
                     /translation="MNLDLEITILLPGGGAFRFAGPFPVSRGQWEHIRCVMDAMAPGL
                     VAMFDEENERCSRTPLGS"
     gene            complement(5824..6135)
                     /locus_tag="VF788_15450"
     CDS             complement(5824..6135)
                     /locus_tag="VF788_15450"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8935549.1"
                     /translation="MKTSAESGSIRIRLSGEIDLANVAAVEEEILAAVPDQPTAVSVD
                     LTDLTYIDSAGIRILFNLATQLQALRIMLELIVPLDSPTRRLIEVSGFESLATLHPTR
                     N"
     gene            complement(6147..>7091)
                     /locus_tag="VF788_15455"
     CDS             complement(6147..>7091)
                     /locus_tag="VF788_15455"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEX8935550.1"
                     /translation="GELCVVIGDVVGRGLSAAAMMGRLRSALRAHALHGSDPAEVLDS
                     LDQHVQHFAHEAMATVQVGMFEPSFERMHLSSAGHPPPVLVVPDQPATLVDMPSDLPV
                     GVRGGVRRRVSIDVPPGALLCFYTDGLVERRDTSLDVGLKRLCEAVVAGPAESVCASV
                     MGRLIGDEPPGDDVAVLVLRRQDSGKVGPMDLAVPAQPWALKRIRFEMRRWLLAFDAP
                     PRVVADLLVAVGEACSNVVEHAYGPEGGIVTVYMELQLPDVVATVGDTGRWRLPRTKN
                     RRRGTLFMRECADNLRIEHGSNGTKVVVRRRLDQWPSR"
BASE COUNT         1286 a         2192 c         2280 g         1333 t
ORIGIN      
        1 tgcctgggca ccttccatga gagcaaacat ggcagcccga ttccttgccg cggggtaccc
       61 gatttacggt gacgatcaaa cccgggagca cgcgcagcga ctcatggagg agggtctgcg
      121 ctggtgcgac cccccgcgcc agggtgccga ggcggccgac atcgtcttca cctcgctgcc
      181 cgacgacggg gtgtcggagg ctgtcgcgtc cggacccgat gggattctcg ccggtctgga
      241 cccgagaaga tctgttccgg cacgctcacg atcatggtcg gtgggacgag gagacctact
      301 cgcgcgtgga accggtgctg cgcgaactgg ggacaccgac gcgcatcggc gacaacgggc
      361 aggggctggt actcaaactg gcgatcaaca tcagcctcgc cgtgcagatg ctcgcgttct
      421 gcgagggcct gctgcttgca cagcgcgatg ggatcgacct cggctggccg cggaggtgat
      481 ggcacacagc tcgatcggct cgccgatgct caaggcgcgc gttccactgg tgctggacct
      541 tcccgacgac gcgtggttcg acgtgtccct gatgcacaag gacattggtc tcgctttggc
      601 ggccgcgcgg gagcggggcg ttgccctgcc ctcggccggt gtcgccgacg acatgctgac
      661 cagggctgcg gagcttggct accagcaccg cgacattgcc gcactctatg aagtcctcgc
      721 acgcggccag gatctacctt ccggactccg ggtgcgccga ccggaccggg cgcgatgatc
      781 cctactgccg tcagcccggc gaacgatcct gaagtcgtga cacaaatcgt ggaggctcct
      841 cagcgtgacc gcgttccggc tcgccgggac tcccgtcacc tcccgtcggg ctgctcaaag
      901 agctggaacg gccggaacag atgttccgcg acctgggccg aactggtatg cggcgatcat
      961 gggcaccggc atagtcgcca acgccggggc gatcctgccg ctgcggattc ccggactgcg
     1021 ggtgttcgcg accgcggtgt gggcccttgc cgccgcggcg ctgatcgccc tgacagccgc
     1081 ctgggcggtg cactggatcc gcttccgggc cgggcgcggg gggatgccgc caacccagtg
     1141 atggcgcagt tctgggatgc cccggctcaa gcccgtagag atcgacttct ccaggggccg
     1201 gccgggcacc aggcatttgg ccacgcgtac ctgcggacat tggccgcgta gaggacggcg
     1261 cgtgaccagt cgatcagtcc acgactaccc ccagttcatc gagcactgct tggtgcaact
     1321 gccgctctca gccggcctgg gtcactgggc gaacgccaac cgacgtgaca actcgtccac
     1381 cacggtctgt gatcatgagt aaaagtcatc catgatccaa gtgagacacg ctcttagccg
     1441 tctgaaggta ccgggcagta cattcatacg tgggccgggc tctccctctc cccgcgtctt
     1501 caaggaaggc accacatggg cacgatcact accgcagacg gcactgagat ttactataag
     1561 gactggggca gcggtcagcc gatcgtgttc agccacggct ggccgctctc ggccgatgac
     1621 tgggacaccc agatgctgtt tttcttgcag cacggctatc gggtcatagc tcatgaccgg
     1681 cgcggtcacg ggcggtccgg ccaggtcggc gatggccacg acatggacca ctatgcggac
     1741 gaccttgcgg cgttgacggc gcatctcaat ctgacgaacg ccattcacgt gggccattcc
     1801 actggcggtg gcgaggtgac gcgctatctg gcacggcatg gcgaaagccg ggtagcgaag
     1861 gcggtgctga tcagcgccgt gccgccgctg atggtgagaa ccgaggctaa tccgggcggt
     1921 cttcccaagg aagtgttcga cggatttcag gcgcaagtgg cgaccaatcg tgcgaagttc
     1981 taccgtgagc tgccggcggg acccttttat ggtttcaatc ggccgggggt ggaatcctcg
     2041 gaggcaatca tcgaaaactg gtggcgtcag ggtatgatgg gtggtgcaaa ggcgcattac
     2101 gacggcatcg cggccttctc gcagaccgat ttcaccgaag acctgaaaaa gatcacggtg
     2161 ccggtgctgg tgatgcatgg tgacgatgac caaatcgttc cctatgccaa cgctggacca
     2221 ttgtccgcga agcttctgca gaacgggacg ctgaagacct acgaaggctt cccgcacggc
     2281 atgcccacta cccaagcgga gacgatcaac gtcgacctgc tggccttcct gaaaacgtga
     2341 catcgaagcg gcgtgatcgc cgcgaagtcc tcatgcgcgg tgttgggttc ggggagcaat
     2401 cgagcggttg gtaccggcac tgcgtgctca cgcgccgcgt gcttagcttc cgggcagctg
     2461 gcccagggtg accgtgacgg tgcgggtccc gccctgcgga gtcccgagcc gtgctggtag
     2521 ggcgtcgaga actctttggc atgagcgtgg tcgcccgtgc cggtggagtt catgggggtg
     2581 gtgccctgga agtgccagct gctggggtca taactggtgg tgggtgggtt gtagccgctg
     2641 aacaggccat cgagatcctc ggtgtcctgg tagcgctcgt ccaccaggaa cgacgcgttg
     2701 gtataggcga ggacgtactc ccggaagtcc agctcgttgg acaggatata gttgatcacg
     2761 ccgccgagga aggcgttgtc ggacccggcg cgcagcggcg cgtgcatgtc ggccagggcg
     2821 ctggtgcggg taaaccgggg gtcgatgtga atgacggggg cgccgaaccg gtatcccgct
     2881 ggtgctcgcg ctgttcctgc aggactacct ggtagccgtc tccgacaccc tgctcgccgc
     2941 gtgtggcttc atgttgcttg ccctgctgat ggctctagca gagctgacgc gacgacggcg
     3001 ccaccgcccc aagctccctg cacaccatgg atcattcccg ctaacagggt tttcttgatc
     3061 gtagcgagcc agtagctcag tttgtcgctg acctggccga actggtcaat cgcccggtac
     3121 aaatagaccc acccaccggc ggccctcatc ccggaaccac cggtcacctg tgacgtgcca
     3181 gcatggccgc gcggcgtcga taaacaacgg gtgaaccgct gcgcgcacca atagatggtg
     3241 acgtggtcga catcgatgcc ccgctcggca ccgcgggggt ggcgctggcc cggtgtggtg
     3301 gacggcatca cgccctccga tgcgcaggca ggagctgttt acgcgatgat cctgttcttt
     3361 ggcgttggtg gtcttgcttg gcgggcaggg cctcgttgat cacgatgtcg gcagatttgt
     3421 tccggagccg cgggtcgagt cgggggagtg ctacatcgag cggtcgccga gcaggtgaag
     3481 gtccatgcca acgaggcccc agagtcgccg agccaagccg gtacggtcgg ggatgtgcgc
     3541 atcgtcattg cgggagggca cgggcagatc gccatgcggt tggagaaact gctcgcacaa
     3601 cgaggtgaca gtccagtggg tatcatccgc gatccgaagc aggccgcgga tttgcggacc
     3661 gttggcgcag atccggtcgt gtgtgacctg gagtcggcag cggtcggtga gctcgccagt
     3721 cacctggacg gcgcggacgc ggtggtattc gcggccggag ccgggtccgg tagcggaacg
     3781 gcacgcaaag agacggtgga ccgcggggcc gctgttttat tcgccgacgc tgctgagcgt
     3841 gcggggatac gccggtacgt aatgatctca gcgatgggcg cagaccggga gccgtcaccc
     3901 ggtacggatc cggtgttcgc cgcctatctg cgagccaagg gcgcggccga taccgacctc
     3961 gccttccgcg ctggtctgga ctggacgatt ctgcggccgg ggcgcctgac caacgaaccc
     4021 ggcaccgggc tggttcagct tgccgtgcat accggtcgtg gtgcggtacc gcgtgatgac
     4081 gtcgcagcgg tgctcctggc gcttttagac acgcccgcgg ccggaatgac gttggagctg
     4141 gtggccggca acacgccggt gggtgaggcc atccgaacgg tcacctccaa ttaccgctcg
     4201 ccagctaagg aatgatgcac tgcctgcaac tcgaaccccg atccgctagc tttgccctga
     4261 cctgccacga tcaggcggcg caggcctgac gtggtgctgg tcccgcaact gttccacccc
     4321 cagctggaaa gctccgttag ggcggccgtc cccggttatg agccccggtt tcccttcctc
     4381 aagtcgagat catgagccga ggggagtccg cgagcacctc tcgttctcct cgtcaaacat
     4441 cgcgaccaat cccggagcca tcgcgtccat gacgcatcgg atgtgctccc attgtccgcg
     4501 cgacacaggg aacggtcctg cgaagcggaa cgcaccacca ccgggaagca agatggtgat
     4561 ctccaggtcc aggttcaccg ctgctcacct tcccatcctt cttttccctc ccttccccga
     4621 attagtcgac tatgtgccgt taggtgaaac acgtctctat ggcgatacgc gatacccggc
     4681 tcgagttcgg ctcatgtgcg atgcctgccc gacgatgggc caagtcgaga tcatgaaggg
     4741 cgctaccgcg tggagacggc ttctacccgt ctccacgccc agttgtccta cgccaatcat
     4801 tcgcatgcgt ctcttgcaac tgtctgacac tagcagcaag tagcggagac tgcgcagaca
     4861 gtctgcacca cgttaacact gaggttgtaa cacttctgtt gacacgtgtt gtcgaactgg
     4921 attccgtcga catcgatcgg ggcggtctcg ggcagcgcgt gcaacgagtt cagcaagtca
     4981 aagctactga gctccatgat ttttcacctc cacccatcgt tatagtttct tactgcctcc
     5041 cgctgcggag agaagggctc ggaggggtgt gcgtcatggc aacatccgca tttcctgtga
     5101 aagagtaaga agacggtcta cagatgatct taacgtcgag tgagtcgact cttagctggt
     5161 cacggcactg tcaactttgt ggtctgcgtg gctgcgatga tcggcgagat gcctctggga
     5221 tgaggaggtc tggtgactgt cggtgtgccg tcgtacaagg gtttcgcttc cgtgtgtcac
     5281 gaacgctgaa gggaccttga tgtagtaaag cgtccggggg cggtgctgcg cgagagatga
     5341 agttaggctc ttccgagtca ccttcgtgtg tggggttcca gaaactcaga cgctgctgct
     5401 atctgggttt catgctgcgg gttcgtactc gttgatcagg cgccaaggat cggctggcac
     5461 ttgatctgct catggccgag gtcgggaacg gcgtggctcg gccgtggtgg gcgaggctcg
     5521 cgagcacggt gcggccagtt gcagtgtcga gggtattttg tgagcactgt gcgcctgccg
     5581 ctggttaaga tcgacatgag ttcggccctg agtgcaccaa atctttcggc gaaacagttt
     5641 gattgcgggc aacgcgcagg gtctgcagga cgcggatgcc tactcgccga gaaccgcgtc
     5701 ctgtatctgt tgacccgagc tgccgtgggc gtggtgccag ctggctgcag agattgcagg
     5761 gccgggctac ttggtcgaga ggttgcgctc accactgtag gatcgcccca actcccgtga
     5821 gacttagttt cttgtggggt ggagcgtagc gagcgactcg aaccctgaaa cctcgattag
     5881 tcggcgggtg ggcgagtcaa gcggcacgat gagttccagc atgatccgca gcgcttgtag
     5941 ctgagttgcc agattgaaca gaatccttat ccccgcactg tctatgtagg tgagatcggt
     6001 gaggtcgacc gataccgctg tgggctgatc ggggaccgct gcgaggatct cctcctcgac
     6061 agccgcgacg tttgctagat cgatctcacc actgagacgg atgcgaatcg atccactctc
     6121 ggcactggtc ttcaccgtcg ccatggtcat cgcgatggcc actggtccag gcggcgacgg
     6181 acgaccactt tggttccgtt ggagccatgc tcaatacgca gattatcggc gcactcgcgc
     6241 atgaacagtg ttccccgtcg tcgattctta gtacgtggca gacgccaccg gcccgtatca
     6301 ccgacggtag ccactacgtc cggcagctgc agctccatgt acaccgtcac gatgccaccc
     6361 tcaggtccgt aggcgtgctc aacgacattg ctgcaggcct caccgacagc gacgagtaga
     6421 tcagcgacca cacgcggcgg cgcgtcgaac gccaacagcc agcggcgcat ttcaaagcga
     6481 attctcttca gcgcccacgg ctgcgccgga accgcaagat ccattgggcc aaccttgccg
     6541 ctgtcctgac ggcgcaagac cagcaccgca acatcatcac caggtggctc atcaccaatg
     6601 agccggccca tgacgcttgc acagaccgac tccgcgggtc cagccacaac cgcctcacac
     6661 aggcgcttca ggccaacgtc cagcgaggtg tctcggcgct caaccaaacc atcggtataa
     6721 aaacagagca gcgcccccgg cggcacgtcg atactcaccc ggcgccgcac cccaccgcgc
     6781 acacccaccg gaagatcact cggcatatcg accaaggtcg caggctgatc aggaacgacg
     6841 agcaccgggg gaggatgacc agccgaggac agatgcatcc gttcaaacga tggctcaaac
     6901 atccccacct gcactgtggc catcgcttca tgagcgaagt gctgcacgtg ctggtccaag
     6961 ctgtcgagca cttcagcggg atcactcccg tggagtgcgt gggcgcgcag cgcgctacgg
     7021 agccggccca tcatggccgc ggcgctcagc ccgcgcccga ccacatctcc gatcacgacg
     7081 cacaactcac c
//
LOCUS       DASVXZ010000728         3074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_173175, whole genome shotgun sequence.
ACCESSION   DASVXZ010000728 DASVXZ010000000
VERSION     DASVXZ010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173175"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VF788_15460"
     CDS             complement(<1..480)
                     /locus_tag="VF788_15460"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX8935551.1"
                     /translation="MRSRFLAGRGRTATPFTALLAAASLAAGCVGLSSSGPPAKSGSL
                     AQHVNLEGQSYTVGGKRFDEQLVLCQIAVAALESVNATVTDRCNIGGSDTTRKALLGG
                     DIDLYWEYTGTAWVSYLNQNPIHDSTAQYEAVKQRDLTQNNIVWLQPTPFNNTYGFAL
                     "
     gene            complement(496..1302)
                     /locus_tag="VF788_15465"
     CDS             complement(496..1302)
                     /locus_tag="VF788_15465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8935552.1"
                     /translation="MTADAPAEAFPPASPAPAAAAPGRTPGWLWQNRDLVVTPMIVVI
                     GLVLVLLYTVNRQLDSVEERALDPSYLWAKFVEHLWLTAASTVLVIAIALPLGIALSR
                     PAAARIRTGTLAFGGFMQALPPFGVIILLAFLLKFGTTTAIIALVAASFLPVLTNTVV
                     GLRQVDPALIEAARGMGMSTGQTLLRVEIPLAVPVMVAGIRVALVLNVGTATLATLIG
                     AGGLGEPISSMLYLGRPQAVFVTSAIVAALALLIDWLAGIAERLVSGRIG"
     gene            complement(1299..2357)
                     /locus_tag="VF788_15470"
     CDS             complement(1299..2357)
                     /locus_tag="VF788_15470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8935553.1"
                     /translation="MIALEGVSKTYPKQSRPAVAELNLVVPEGAIVMLIGPSGCGKTT
                     TLKMMNRLIEPTAGRILLDGEDVTDVNADQLRRRIGYVIQQVGLFPHLSIADNIAVVP
                     KMLGWDKGRITRRVNELLHLVGMEPAEFRDRYPRQLSGGQQQRVGVARGLAADPAVML
                     MDEPFGAIDPITRERLQEEFLEVQRQVAKTICFVTHDLSEAVKLGDRIAVFAAGGRLA
                     QYDAPGQVLAHPADEFVAEFVGSGAAVRRLSLLELNDLELEEVVVSSGDAPPNGHPVL
                     AVDDAGRPSAWHHLPGSAQPPPLVTVPLSGTVYDAVDVMLERRSPLAVVVDDAGQPRG
                     ALRWDALVGDLRAKKPLL"
     gene            complement(2407..>3074)
                     /locus_tag="VF788_15475"
     CDS             complement(2407..>3074)
                     /locus_tag="VF788_15475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8935554.1"
                     /translation="LSENSTELIFYTQQHFLLVLYSVTIASVISLVLALVLHTNQLTP
                     ASWRRSLRVGSREVSLLVTSAALTIPSLALFGMLQPLLGLGVTPSIVALTLYAIYPVL
                     RNTVAGLSSVDPAVLEAARGVGMGPVRRMLRVQLPLAWPVIISGIRVAVLIVISIAVV
                     AALINGPGFGKPLLDGLARLGAVNSFNEVITGTLGCLVVAAGYEIIFVVIRRLTTPRG
                     IRV"
BASE COUNT          557 a         1018 c         1029 g          470 t
ORIGIN      
        1 gagggcgaag ccgtaggtgt tgttgaacgg ggttggctgg agccagacga tgttgttctg
       61 ggtcaggtcc cgttgtttga ccgcctcgta ttgtgccgtg ctgtcgtgga tcggattttg
      121 gttcaggtag gagacccacg cggtaccggt gtattcccag tacaggtcga tgtccccgcc
      181 gagaagcgcc ttgcgggtgg tgtccgagcc accgatgttg catcggtcgg tgaccgtggc
      241 attgaccgat tccagggcag ccacggcgat ctggcacagc accagctgct cgtcgaatct
      301 tttgccgccc acggtgtagg actggccttc gaggttgacg tgctgggcga ggctgccgct
      361 tttcgctggc ggtccagagc tgctcagccc gacgcatccg gcagctagcg aggcggcggc
      421 cagcagtgca gtgaacgggg tggcggtgcg cccgcggccg gccagaaatc tcgatcgcac
      481 gtgctcgccc cttgcttacc cgatccggcc gctgacgagc cgttcggcga taccggccag
      541 ccagtcgatg agcagcgcca gcgccgccac gatggccgaa gtgacgaaca ccgcctgcgg
      601 ccggccaagg tagagcatgc tgctgatcgg ctcgccgagg ccgcccgcgc cgatcaaggt
      661 ggcgagcgtg gcggtgccga cgttgagcac cagcgccacc cggatgcctg ccaccatcac
      721 cggcaccgcg agcggaattt ccacccgcag cagggtctgc cccgttgaca ttcccatgcc
      781 gcgagcggcc tcgatgagcg ctgggtccac ctgccgcaac ccgaccacag tattggtgag
      841 caccggcagg aacgatgccg ccaccagcgc gatgatcgcc gtcgtggtgc cgaacttgag
      901 caggaaggcc agcaggatga tcacgccgaa gggcggcagc gcttgcataa agccaccgaa
      961 cgcgagcgtc ccggtacgga tccgggccgc cgcggggcgg ctcagcgcaa tccctagcgg
     1021 cagcgcaatg gcgatcacca gtacggtcga cgctgccgtg agccagaggt gctcgacgaa
     1081 cttggcccac aggtaggagg gatccagcgc acgctcctcg acgctgtcca gttgccgatt
     1141 gacggtgtag agcagcacca gaacgagtcc gatgaccacg atcatcggag tcacaaccag
     1201 gtcgcggttt tgccagagcc aaccgggcgt gcggccgggt gccgctgcgg ccggtgccgg
     1261 gctggcggga ggaaatgctt cggcaggagc gtcggcggtc atagcagcgg cttcttagct
     1321 cgcaggtcgc ccaccagagc atcccagcgt agagcgcccc ggggttgccc ggcgtcatcg
     1381 accaccacgg ccagcgggga gcggcgctcg agcatgacgt cgacggcgtc atagacggtg
     1441 ccggacagcg gcaccgtgac cagcggcggg ggctgcgccg acccgggcag gtggtgccag
     1501 gccgacgggc gccccgcgtc atccaccgcg agcaccggat ggccattcgg cggagcgtcg
     1561 ccactggaga ccactacctc ctccagctcc aggtcgttga gctccagcag cgacaggcgg
     1621 cggaccgcgg cgccactgcc gacgaactcg gcgacgaact catccgcagg atgggcgagg
     1681 acctgacccg gggcgtcgta ttgcgccagc cggccgccgg cagcgaacac agcaatccga
     1741 tcacccagct tcaccgcctc ggacaggtcg tgggtgacga aacagatggt cttggcgacc
     1801 tggcgctgca cctcgagaaa ctcctcctgc agccgctctc gggtgatggg gtcgatggcc
     1861 ccgaacggct cgtccatcag catcaccgcg gggtcggctg ccagaccacg cgctaccccg
     1921 acgcgctgct gctggccacc ggagagctgc cgcggatacc ggtcccggaa ctcggcaggc
     1981 tccatcccca ccaggtgcag cagttcgttg acccggcggg tgatacggcc cttgtcccag
     2041 ccaagcatct tgggcaccac cgcgatgttg tccgcgatgc tcaggtgcgg gaacagcccc
     2101 acctgctgga tcacatagcc gatccgcctg cgcagctgat cggcgttgac atcggtgacg
     2161 tcctcaccgt cgagcaggat gcgcccggcg gtcggctcga tgagccggtt catcatcttc
     2221 agagtggtcg tcttgccgca cccggatggc ccgatgagca tcacgatggc gccctcgggg
     2281 acaaccaggt tcagctcagc caccgccggc ctcgactgct tcggataggt cttgctgacc
     2341 ccttccaagg cgatcatcgg acgctgaccg gaccggtgga cggagtcggt cagagactgc
     2401 acggtctcag acacggattc ccctcggggt ggtcaatcgc cggatgacaa cgaagatgat
     2461 ctcgtaaccg gccgccacca caaggcatcc cagcgtgccg gtgatcacct cgttgaacga
     2521 gttgacggca ccgagccggg ccaagccgtc gagtaacggc ttaccgaagc cgggaccgtt
     2581 gatgagggct gccaccacag cgatcgagat cacgatcagc actgcgaccc gaatcccgga
     2641 gatgatcacc ggccaggcca gcggcagctg cacccggagc atccggcgca ccggacccat
     2701 cccgaccccg cgagccgcct ccagcaccgc ggggtctacc gaggacagtc cggccacggt
     2761 gttgcgcagc accgggtaga tcgcatacag ggtgagcgcg acgatgctgg gagtgactcc
     2821 gagaccgagc agcggctgca gcatgccgaa tagtgccaac gatgggatgg tcagtgccgc
     2881 ggatgtgacc agcagcgata cctcccggct gcccacccgc aggctgcgcc gccacgacgc
     2941 aggggtgagc tggtttgtgt gcaacaccag agccagcacc agcgagatca cgctggcaat
     3001 ggtcaccgaa tagagcacca gcaggaagtg ctgctgggtg tagaagatca gttcggtgga
     3061 gttctccgac aagt
//
LOCUS       DASVXZ010000729         2679 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1027187, whole genome shotgun sequence.
ACCESSION   DASVXZ010000729 DASVXZ010000000
VERSION     DASVXZ010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1027187"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /gene="lipB"
                     /locus_tag="VF788_15480"
     CDS             complement(<1..609)
                     /gene="lipB"
                     /locus_tag="VF788_15480"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005164232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HEX8935555.1"
                     /translation="MTVATQSCRATTAPVEVRHFDVIDYAQAWALQRELAAVCAEGTG
                     SDVLLLLEHPSVYTAGRRTTPAERPNDSTPVIDVDRGGKITWHGPGQLVGYPVIALAE
                     PVDVIDYVRRLEQALIAVCTDLGLETGRIAGRSGVWLAADSATGRPERKIAAIGVRVS
                     RGVTMHGFALNCEPDLSAFDRIVPCGIADAGVTSLSAELGRPV"
     gene            complement(663..1553)
                     /locus_tag="VF788_15485"
     CDS             complement(663..1553)
                     /locus_tag="VF788_15485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HEX8935556.1"
                     /translation="MRVAIAGSSGLIGTALVVQLRQAGHDVVRLVRRPPRALDERAWD
                     PSAATMDAGTLVEIDAVVNLCGSAMGNRRWSGEVKQAIRDSRIGPTEVLAAAVAEHRV
                     PVLVSASGVGYYGDTADREVDETSPLGSGFLAQVCRDWEAATAPAVRAGARVVLVRTG
                     LVISPAGGLMSQLKPLFAVGLGARLGSGAQYMPWISLDDEVGAIRFALERDELSGPVN
                     LSGPDPVTNAEFTRALGEAMHRPTPLVVPGFALRLIRGAELVDEMVMTGQRAVPSVLR
                     KYGYPFQHATLPAALAAALE"
     gene            complement(1636..>2679)
                     /gene="sucB"
                     /locus_tag="VF788_15490"
     CDS             complement(1636..>2679)
                     /gene="sucB"
                     /locus_tag="VF788_15490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase, E2 component,
                     dihydrolipoamide succinyltransferase"
                     /protein_id="HEX8935557.1"
                     /translation="KPEQVPQTAQPREAIPESGGSEDPSGAPYVTPLVRKLATEHGID
                     LLTVQGTGVGGRIRKQDVLAAVEAPEPEPESQPSAPPQQAPTIPVPERPSTAAPSVHA
                     PSAAAEPRGRTEKMSRMRSVIAKRMVESLQISAQLTTVVEADITRLARLRDRAKREFE
                     AIEGVKLSFLPFFAQATIEALKQHSRVNASIDTEKGEVTYHSAEHLGIAVDTERGLLV
                     PVIHDAGDLNIAGLARRIADLAARTRTNKITPDEMSGGTFTLSNTGSRGALFDTPIIL
                     QPQVGILGTGSVIKRPVVLSGEDGDTIAIRSIIYLALSYDHRLVDGADAARFLNTIKQ
                     RLSDAAFEGDLGL"
BASE COUNT          437 a          891 c          888 g          463 t
ORIGIN      
        1 cactggacga cctagttcgg cactcagcga cgtcacgccg gcatcggcga taccgcaggg
       61 gacgatacgg tcgaacgcgg acaggtccgg ctcgcagttc aacgcgaacc cgtgcatggt
      121 caccccacgg ctgaccctga ccccgatcgc agcgatcttg cgctcgggac ggccggtagc
      181 ggagtcagcc gccagccata cccccgaccg ccccgcgatc cgcccggtct ccaatcccag
      241 atcggtacag acggcgatca gcgcctgctc caggcggcgc acataatcga tcacgtcgac
      301 cggctcggcc agcgcgatga cggggtaacc gacgagttgg cctggcccgt gccaggtgat
      361 ctttccaccg cggtcgacgt cgatcaccgg cgtgctgtcg ttgggtcgct cagccggtgt
      421 ggtccgccgc cccgcggtgt acacggaagg gtgctcgagc agcagcagca catcagaacc
      481 ggtgccctcc gcgcagacgg cagccagttc ccgttgcagc gcccaggcct gggcgtagtc
      541 gatgacatcg aagtggcgga cctcgaccgg cgctgtggtg gcccggcaag actgggtagc
      601 aaccgtcacg gagtcgacat tacgccgtcc cttcgggtat cgcggtggtg ctcttatccc
      661 agctattcca acgctgcggc cagtgctgcg ggcaaggtgg cgtgctggaa cgggtagcca
      721 tatttgcgta gcactgacgg caccgcgcgc tgcccggtca tgaccatctc gtcgaccaac
      781 tcagcaccgc gaatcaggcg cagcgcgaag ccgggaacga cgagtggtgt cggtcgatgc
      841 atcgcctcgc ccagagctct ggtgaattcc gcattggtca cagggtcagg accgctgaga
      901 ttgacggggc cagacagctc gtcgcgttcc agcgcaaagc ggatcgcgcc cacctcgtcg
      961 tccagcgaga tccacggcat gtactgcgcg ccgctgccca gccgagcgcc cagcccgacc
     1021 gcgaacagcg gcttgagctg actcatcaaa ccgccggccg gggagatcac caggccggtg
     1081 cgcaccagta ccacccgcgc cccggcccgc accgcagggg ctgtcgccgc ctcccagtcg
     1141 cggcagacct gcgcgagaaa tccagagccc aggggggagg tttcgtcgac ctcgcggtcg
     1201 gcggtgtcgc cgtagtaacc caccccggag gcactcacca gcaccggaac ccggtgctcg
     1261 gcgactgcag cggcgagcac ctcggtgggg cctatccggc tgtcccggat tgcctgcttg
     1321 acctcacccg accaccgcct gttccccatc gccgagccgc atagattcac caccgcgtcg
     1381 atttccacca gggtgccggc atccatcgtc gctgctgacg ggtcccaagc ccgctcgtcc
     1441 agggcgcggg gaggccggcg caccaaccgg actacgtcat ggccggcttg gcgcaactgc
     1501 accactaatg cggtaccgat gagacccgac gacccggcga tcgcgacgcg catgaggaga
     1561 tcttctccgg tccgcgccgg ctgcgcgaac cgggtacgtg tttagctcgg ttcgtgttgc
     1621 agaacgggag gatgctcata gtccgaggtc gccctcgaac gcggcgtcgc tgaggcgctg
     1681 tttaatcgtg ttgaggaacc tggccgcgtc ggcaccgtcg accagccggt gatcgtagga
     1741 cagcgccagg tagatgattg agcggatcgc gattgtgtcg ccgtcctcgc cggagagcac
     1801 tactggtcgt ttgatcacac tgccggtgcc gaggattccg acctggggtt gcaggatgat
     1861 cggcgtgtcg aacagggctc cccgcgagcc ggtgttgctg agggtgaagg tgcccccgct
     1921 catctcgtcg ggggtgatct tgttcgtcct ggttcgggcg gcgaggtcgg caatccggcg
     1981 agccagaccc gcgatattga ggtcacccgc atcatgaatc accggcacca gcagacctcg
     2041 ctcggtatcc acagcgatgc cgaggtgttc cgcactgtgg taggtgacct cacccttctc
     2101 ggtgtcgatc gaggcgttga ccctggagtg ctgtttgagc gcctcgatgg tggcctgggc
     2161 gaaaaacggc aggaacgaga gcttgacgcc ctctatggcc tcaaactcgc gcttggcccg
     2221 atcgcgcagc cgtgcgaggc gggtgatgtc agcctctacc accgttgtga gctgcgcgga
     2281 gatctggagt gattcgacca tccgcttggc gatgacgctg cgcatccgag acatcttctc
     2341 ggtccggcca cgcggttcgg cggccgccga cggtgcgtgc acggacggcg ctgcggtgga
     2401 tggccgctcc ggtaccggga tggtcggcgc ctgctgtggt ggcgccgatg gctgggactc
     2461 cggctcgggt tcgggcgctt cgacggcggc gagcacgtct tgcttgcgaa ttcggccacc
     2521 gactccggtg ccctggacag tcaataggtc tatcccatgc tcggtcgcaa gcttgcgtac
     2581 cagaggcgtg acgtacggtg caccgctggg atcttcggat ccaccagatt cgggtatcgc
     2641 ctcccgaggc tgggcagttt gtgggacctg ctcgggttt
//
LOCUS       DASVXZ010000730         5510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_530928, whole genome shotgun sequence.
ACCESSION   DASVXZ010000730 DASVXZ010000000
VERSION     DASVXZ010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5510
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530928"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..1684)
                     /locus_tag="VF788_15495"
     CDS             complement(32..1684)
                     /locus_tag="VF788_15495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase"
                     /protein_id="HEX8935558.1"
                     /translation="MSRQSVAKAHQKIQELSWEPMYHTPYQKYGTDYTFQKAQKRDPL
                     KQVLRSYFPMQEEKDHRVYGASDGAIRGNMFRQVQERWLEWQKLFLSIIPLPEISAAR
                     SMPMLFHTVPNPELHNGQAIQMIDEVRHSTIQQNLKRLYMNNYIDPAGFNSSLRNFHN
                     DYCGTIGRQFAEGFITGDAITAASIYLTIVAETAFTNTLFVAMPAEAAANGDYLLPTV
                     FHSVQSDESRHISNGYATLLMALSDEGNHQLLERDLRYAWWNNHRVVDAAIGTFIEYG
                     TKDRRKERESYAEMWRRWIYDDYYRSYLVPLEKYGLVVPHDLIEEAWNQIWNKGYVHE
                     VAQFFSTGWLANYWRIDPMTDEDFEWFEYKYPGWYDRYGKWWENYNRLSMPNGHHPIV
                     AENVDYVYPHRCWVCMVPCLVREDMVMDKVDGQWRTYCHEMCAWTDKTAFRPTFMGRE
                     TPNMGRLTGKREWETLYHGWNWADVVSDMGFVRDDGKTMTAQPHLNLDPKKMWTLDHL
                     RRMPNLLSPNVLLNEMSDEERQAFQADYLRQGPAGRPAPAAD"
     gene            complement(1918..2169)
                     /locus_tag="VF788_15500"
     CDS             complement(1918..2169)
                     /locus_tag="VF788_15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010242438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935559.1"
                     /translation="MSASEPSAAETFNPWSVVNLVFHHLAAKGLHPVLGEAGDPARPA
                     AELLRALGIEPGPERSEHTRRDISQQLADLRTAVLGERP"
     gene            2383..4317
                     /locus_tag="VF788_15505"
     CDS             2383..4317
                     /locus_tag="VF788_15505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935560.1"
                     /translation="MQVADDGMAPPPRIIGAPKGRLVVEANPLGARRVAATRDPPGAS
                     PLLASAREHFLTAEPVKPGVVRDSILASWIRSRDWRVPADHFDLPYDPNPNRDSRLTY
                     SANNVIGDLADQLAGEPVCIVLTDAHGVVLDRRTGDSALRAHLDRVKLDIGFSYSEQH
                     VGTNGIGTALEGRGPAQVFGHEHYVEHLEDLACAGAPIHHPVTGKLVGIIDLTCWRAD
                     ANPMMVAAATTAAKRIEEALFEHSGRHELALLHDYLMTCRRGHGAVLAISKDMLMMND
                     RAREILDPGDQEVLVAQATEALGSGGRQLLVLDLPSGAIARLLCKPSWDDRSVTGGIV
                     QVQLTPPIATSGGHEVRQPAVTLPAAVGSGTLWTRCCRDAGRYFQSGEWLVLEGEPGV
                     GKLAIARGTHQLRSPAGHMRVFDGIEVAEGGDSARWVEELAEEIGGGTATIILAHIDQ
                     LPDEIMRALYDVLEPYRESTDTDRPWVVATRGQQLPDHDGDLARLLRCFPRSLQIPPL
                     RHHIEDLRDLVPFMISRLTRGGSLSCSAEAMRVLMRNRWAGNIAQLYQTMRKIVANRR
                     TGVIMVADLPSECQASTRRVLTPLESIECDAIVQALLNVDGNKVRAAQQLGMSRATIY
                     RKIRDYGIRMPRVPESPART"
     gene            complement(4332..4664)
                     /locus_tag="VF788_15510"
     CDS             complement(4332..4664)
                     /locus_tag="VF788_15510"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX8935561.1"
                     /translation="MIFIVVKFTIHPDKADEWPSLIEEFTQATRREDGNIFFEWSRSV
                     DAPNQFVLVEAFADSAAGGVHVNSDHFKNFIAWVPEVIVKKPEIVNVEVPGDGWGQMA
                     ELTPASAS"
     gene            4781..>5510
                     /locus_tag="VF788_15515"
     CDS             4781..>5510
                     /locus_tag="VF788_15515"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935562.1"
                     /translation="MEEGPQNWGTPLFERVLHRSGVGRGTLLLDLGCGAGLLCRMAAD
                     RGARVTGIDHDAGQIERAAALVPEGAFEVGDILALPYPAARFDVVICVQSIMHVTNPL
                     TALREAARVARPGAPVVITVWGKEENCDIRAFGQALSGLLPRPAGRGTSMQTPALSAD
                     GRLERLATLAGLTVTDVGEVVCPFRYPDEETLMRDLFGSSLGRRALRVADPAAVRRAV
                     LEGLGGYRTSRGGYQLDNTFRYLVG"
BASE COUNT          929 a         1797 c         1766 g         1018 t
ORIGIN      
        1 cgcagacaac gtcgataccg cagcggctcc gctaatcggc cgctggcgct ggccgcccgg
       61 ccggaccctg acgcaggtag tcggcctgga aggcctgccg ttcctcatcc gacatctcgt
      121 tgaggagcac gttcggactc aacaggttcg gcatgcgccg caggtgatcc agcgtccaca
      181 tcttcttggg atcgaggttc agatgtggct gggctgtcat ggtcttgccg tcgtcgcgga
      241 cgaagcccat gtcgctgacg acgtcagccc agttccagcc gtggtagagc gtctcccact
      301 cgcgtttgcc ggtgaggcgt cccatgttcg gggtctcccg acccatgaag gtcggccgga
      361 acgcggtctt gtcggtccac gcgcacatct catggcagta ggtgcgccac tgcccgtcca
      421 ccttgtccat gaccatgtcc tcgcgtacca ggcacggcac catgcagacc cagcaacggt
      481 gcgggtacac gtagtcgacg ttctcggcga cgatcgggtg atggccgttc ggcatggaca
      541 ggcggttgta attctcccac cacttgccgt acctgtcgta ccagcccggg tacttgtact
      601 cgaaccactc gaagtcctca tcggtcatgg ggtcaatccg ccagtaattg gcgagccaac
      661 cggtggagaa gaactgcgcg acctcgtgga cgtatccctt gttccagatc tggttccagg
      721 cttcttcgat gaggtcgtgc gggaccacca gtccgtactt ttcaagcggt accagatagc
      781 tgcggtagta gtcgtcatag atccaccgcc gccacatctc ggcgtagctc tcccgttcct
      841 tgcggcggtc ctttgtgccg tactcgataa aggtgccgat cgcggcatcg accacccgat
      901 ggttgttcca ccaggcgtac cgcaggtcgc gctcgagcag ctggtggttg ccctcgtcgg
      961 aaagggccat cagcagcgtg gcgtagccat tgctgatgtg ccgcgactcg tcggactgca
     1021 ccgagtggaa cacggtgggc agcaggtagt cgccgttggc tgccgcctcg gcgggcatgg
     1081 ctacgaacag cgtgttggtg aatgcggtct cagcgacaat cgtcaggtag atgctcgccg
     1141 cggtgatggc gtcaccggtg atgaagccct cggcgaactg ccgcccgatc gtgccgcagt
     1201 agtcattgtg gaagttacgc aggctcgagt tgaaacctgc cggatcgatg tagttgttca
     1261 tgtacaggcg cttgagattc tgctggatcg tcgagtgcct gacctcgtcg atcatctgga
     1321 tggcctggcc gttgtgcagc tccggattgg gcaccgtatg gaacagcatc ggcatggacc
     1381 gggccgccga gatctcaggt agcggaataa tggacaaaaa cagcttctgc cactcgagcc
     1441 agcgctcctg cacctggcgg aacatattgc cgcggatcgc gccgtcggag gccccgtaga
     1501 cgcggtggtc tttctcctcc tgcatgggga agtatgaccg cagaacctgc ttgagcgggt
     1561 ccctcttctg cgccttctgg aaggtgtagt cggtcccgta cttctggtac ggcgtgtgat
     1621 acatcggttc ccaggacagc tcctggatct tctggtgagc ctttgccacg ctttggcgac
     1681 tcatggtcac actcctcacc cgtgtactcg ggtccgctgc ggcgtcagcc gacagcgtcg
     1741 atcacttgct cggtttgttg ctcggctcgt cgggcaggtc tgtccagctc acggtcgcgc
     1801 gttgtgcctt gaatcacacc taacgccgga ctggccggtg gtctcaacat gagacaaata
     1861 gatcagtttc ctgctgctcc ctccgacgtc cgtgttgatc aggcggtgca acagcggtca
     1921 cgggcgctcg ccgagcacgg ccgttcgcaa atcggccagt tgctgactga tgtcacgcct
     1981 cgtgtgctcg gagcgctccg ggccgggctc gataccgagt gctcgcagca gctcagccgc
     2041 cggccgcgcc ggatctcctg cctcgccgag aacaggatgc aaacccttcg cggccaggtg
     2101 gtggaagacc aggttgacga cgctccacgg gttgaacgtt tccgctgcgg aaggctcgga
     2161 cgcactcatc gaggccgcct catctccgtg ccacctcacg cttccgccca cacccgccga
     2221 cggagccgac acatcggaca cccgccagca cagcaggcaa gttgaacccc tgccggtact
     2281 cccggtgtct tggatcacac acccccgtgc gcgcacgggc tgtctcaaca tgagacattg
     2341 gccggttggc gcaataccta taggcgttcg ggcggtacca tcgtgcaagt tgccgacgac
     2401 ggtatggcgc cgccaccgcg gatcattggg gctccgaagg ggcgacttgt ggtcgaagct
     2461 aacccgctag gcgcccgacg ggtagccgca acccgcgacc cgccgggcgc tagcccgctc
     2521 ctggccagtg cccgggaaca tttcctgacc gctgagcccg tgaagccagg cgtcgtccgc
     2581 gacagcattc tggcgtcctg gattcgatcc cgggactgga gagtgcccgc cgatcacttc
     2641 gacttgccgt acgatcccaa ccccaaccgg gacagccggc tcacctacag cgccaataac
     2701 gtcatcggtg atctcgcgga tcagctcgcc ggtgagccgg tgtgcattgt cctgaccgac
     2761 gcccacggtg tcgtgttgga caggcgcacc ggtgactccg ccctacgcgc acatctagac
     2821 cgggtcaagc tcgacatcgg gttcagttac tccgagcagc acgtcggaac gaacggcatc
     2881 ggcaccgcgc tggagggacg cggcccggcc caggtcttcg ggcacgagca ctacgtcgag
     2941 catctggagg acctggcctg cgccggcgcg ccgatccatc atccagtgac cggcaagctg
     3001 gtcggcatca tcgatctgac ctgttggcga gcggacgcca accccatgat ggtggccgcc
     3061 gccacgacgg ccgcgaagcg gatcgaagag gctctgttcg agcactctgg ccgccacgag
     3121 ctggccttac tgcatgacta cctcatgacg tgccggcgcg gccacggcgc cgtactggcg
     3181 atcagcaaag acatgctgat gatgaacgat cgggcccgcg agatcctcga ccctggagac
     3241 caggaagttc ttgtcgcgca ggccaccgag gcgctgggtt ccgggggccg gcagctgctg
     3301 gtcctcgatc tccccagcgg tgccattgcg cggctgctgt gcaagcccag ctgggacgac
     3361 cgctcggtca ccggcgggat agtgcaggtc cagctaaccc cgccgatcgc caccagcggc
     3421 ggtcacgagg tcaggcagcc agcggtgacc ctgccagcgg cagtgggttc cggaacgcta
     3481 tggaccaggt gctgccggga tgccggccga tacttccaat ccggggagtg gttggtgctg
     3541 gagggtgaac cgggcgtggg caagctggcg atcgcccgcg gcacgcacca gctccgctcg
     3601 ccggccggac acatgcgggt gttcgacggg attgaggtgg ctgagggagg cgactccgcg
     3661 cggtgggttg aggaactcgc ggaggaaatc ggcggcggca ctgcgacgat catcctggct
     3721 catatcgacc aactgcccga cgagatcatg cgggcgctgt atgacgtgct cgagccgtat
     3781 cgggaatcga ccgacaccga ccggccgtgg gtggtggcga cccgcggtca acaactgccg
     3841 gaccacgacg gtgacctcgc ccgcctgctt cgctgcttcc cccgctcgct gcagatcccg
     3901 ccattgcgcc accacatcga agatctgcgc gacctcgtgc cgttcatgat ctcccggctg
     3961 accaggggtg gttcgctgtc ctgctcggcc gaggcgatgc gggtgctgat gcgcaaccga
     4021 tgggcaggga acatcgcgca gctttaccag accatgcgca agatcgtcgc gaaccgccgg
     4081 acaggtgtga tcatggtggc ggacctgccg tctgagtgcc aggcgagcac gcgccgggtg
     4141 ctcacccccc tcgagtcgat cgagtgcgat gcgatcgtgc aggcgctgct caacgtcgac
     4201 ggcaacaagg tccgcgctgc ccagcagctc ggcatgtcgc gcgccacgat ctaccgcaag
     4261 atccgcgact acgggatcag gatgccgcgt gtaccggagt ccccggcccg gacctgacgc
     4321 cccgagacgt gctaggaagc gctggccggc gtcagctcgg ccatctgccc ccacccgtcg
     4381 ccgggcacct cgacgttcac gatctccggc ttcttcacga ttacttcggg aacccacgct
     4441 atgaagttct tgaaatggtc ggagttcaca tgcaccccgc ctgctgcgct gtccgcgaat
     4501 gcttcgacca ggacgaactg gttgggcgcg tcgacgctcc ttgaccattc gaagaagatg
     4561 ttgccgtctt ctcgccgagt ggcctgggtg aactcctcga tgagcgaggg ccactcatcg
     4621 gccttgtcgg gatgaatcgt gaacttgacg acgatgaaga tcaccgagaa ctcctctgcc
     4681 ttcgtgctcc ccctgtagag cttgtcatgt gaacacctga gtgtcgtcga tgaccacgcc
     4741 gtagagcatg cgacaccgtg cagcattaag ttgacgaact gtggaagagg gaccacagaa
     4801 ttggggaacg ccactgttcg agcgggtcct gcaccggtca ggagtcggtc ggggaacctt
     4861 gctgctcgac ctgggttgtg gagccgggct gctgtgccgg atggccgcgg accgtggcgc
     4921 gcgggtcacc ggaatcgacc acgacgcggg gcagatcgag cgcgctgccg cgctggtgcc
     4981 cgagggtgcc tttgaggtcg gtgacatcct ggcgctgccc tacccggccg ccaggttcga
     5041 cgtcgtgatc tgcgtccaat cgatcatgca cgtcacgaac ccgttgacgg ccctccgcga
     5101 agccgcccgg gtcgcgcgcc ccggcgcacc ggtggtgatc acagtctggg gcaaggaaga
     5161 gaactgcgac atccgcgcct tcggacaggc cctttccggg ctgttgcccc gccccgccgg
     5221 ccgcggtacg agcatgcaga cgccagcgct gtcggctgat ggccggctcg agcggctggc
     5281 taccttagct gggctcaccg tgacggacgt cggtgaggtc gtctgcccgt tccggtatcc
     5341 cgacgaggaa acattgatgc gcgacctctt cggctccagc ctcggccgac gagcgctgcg
     5401 cgttgccgac cccgccgccg tgcgccgggc cgtactcgag gggctgggcg gctaccggac
     5461 atcgagaggt ggttaccagc tggacaacac ctttcgctac ctcgtcggga
//
LOCUS       DASVXZ010000731         4737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1784662, whole genome shotgun sequence.
ACCESSION   DASVXZ010000731 DASVXZ010000000
VERSION     DASVXZ010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4737
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1784662"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1395
                     /locus_tag="VF788_15520"
     CDS             <1..1395
                     /locus_tag="VF788_15520"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HEX8935563.1"
                     /translation="EEVRVSQVTHDRQNGQATVSRAASDESSLTAQPVWRATNAPVAS
                     SRTDDVWFRDPLRGWAVNSNGQILHTEDGFVTWEEQFHDEDVYLRCVGFASDTRGWVG
                     TLSENKRLFETSDGHTWTAVANLPQLAPSAVCGMSVVDESVVYASGTNFPNKPPRMMR
                     TIDGGASWQAWDMSVHASLLVDCYFTDADHGWVVGGKSQAANPTRNDVRAVVLRTEDG
                     GQSWVNTIAGLSAELPLGEWGWKIQFLDEQVGFVALESFTRGAILKTVDGGKTWTRLK
                     INDPQGNANLEGIGFIDESTGWVGGWGSASFRDGFSSATTDGGTTWQNANEIGAFINR
                     FRFFHEPVTVGYASGRTVYRYAVAPLPGPRHAAAPVGLRFLADNAPRRSEAPIPITVT
                     VPSNAEALTINIWDRFGAHVRRLLDEPQPADGSRTLEWDGTDDAGRPLDEGSFLIRVS
                     VDGRSESQIVYITR"
     gene            1441..3540
                     /locus_tag="VF788_15525"
     CDS             1441..3540
                     /locus_tag="VF788_15525"
                     /inference="COORDINATES: protein motif:HMM:NF024306.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX8935564.1"
                     /translation="MEGRFFAPGSIIALPSFAQDDGKARVAAVAATGPADPIHDPPLE
                     PRDEAIFLLTAAAEIEHALMVQYLFAAYSVRVVPGDPHADKLESVQRLVAQIAREEMG
                     HLATVQNLLHLLGGPLNLNREHSPYASEIYPFRFKLEGLTLDSLAKYVTAESPSKLPK
                     DMSAADKALVEQIWKNAARANDGQQVRHVGRIFERLAHLFGEVLADDDFRLDTIGRQA
                     RDEDWGFEPRTPEDGEKLIIESFANADVGQVRDAAVTAVRKIGAQGEGFDLEPAGPTS
                     SESHFERFFGIYQDVAALYGAGAMITWPVAENPNTTSTEQPHSMDAVALAQEELASKG
                     RITHPQTLAWAKLFNFRYRMLLARFSHFMRLNQSLYLGDPGSRQGDHTPRGLLLILTF
                     DEMRRLAKIAKKLVQLPKDDPPGQLHAGPPFELPYTLNLPEDEPQRWRTHLDISRASV
                     RLIREQLQPDDQVTDRDEFLDDLVKLDEDAQVVMLALAAGREIPPESLPNDFQKVVRI
                     LEDAVRGFTIGCEPHPTNFWAGKTRDQFITGNPKVVKLNLDGTVNTDPDTAPLIKRLN
                     SSSIPSRMPRLRPPVPAPRVGFIRQWIADGCPDNNPPGQTGLQRERDPRSEPLTPSPE
                     PLSFESDIKSLFREDPDRSSMLAISGFDLHRYEDVRDHADDIAAKLGDGTMPCDGGWP
                     PNRITIFLRWIDDGKRP"
     gene            3760..>4737
                     /locus_tag="VF788_15530"
     CDS             3760..>4737
                     /locus_tag="VF788_15530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8935565.1"
                     /translation="MTAPLEAAGSPAHTQPGAGGEGTATAIQGRSLGQIAWLRLKRDK
                     VALAGGGVVVALILVAIFAPVIVALLGHPPLEFHYDKVDPDLQVPRGDFGGISPDFLF
                     GAEPVNGRDVFSRVVYGSRISLLIAFLATMLSVVLGTVMGVIAGYFGGWIDTLISRTM
                     DVFLAFPLLLFAIAISAPLQTGKPLRIWPLPLHLSGTPLNIAILVFIIGFFNWPYIGR
                     IIRGQALSLREREFVDAARSMGARSPYILFRELLPNLVAPILVYATLLIPTNILFEAA
                     LSFLGVGVQAPTASWGAMLTDASRIYQVDAYFMLFPGLAIFITVLAFNLF"
BASE COUNT          853 a         1623 c         1457 g          804 t
ORIGIN      
        1 gaggaggttc gcgtgtcgca ggtgacccac gaccggcaga acggccaggc gaccgtttcc
       61 cgcgccgcaa gcgatgagag ctccttaacg gcccagccgg tgtggcgcgc caccaacgca
      121 cctgtcgcga gctcgcggac cgatgacgtc tggttccgcg acccgctgcg cggctgggcg
      181 gtgaacagca acggccagat cctgcacacc gaggacggct tcgtcacctg ggaggagcag
      241 ttccacgatg aggacgtcta cctgcgatgt gtcggcttcg cctccgacac tcgcggctgg
      301 gtagggacgt tgagcgagaa caagcgcctg ttcgagacct cggacgggca cacctggacc
      361 gccgttgcga atctccctca gctggcccca tccgcggtgt gcgggatgtc cgtcgtcgac
      421 gagtccgtcg tgtacgcctc ggggacgaac ttcccgaaca aaccgccacg gatgatgcgg
      481 accattgacg gcggggcgag ctggcaggcc tgggatatgt ccgtacacgc ctccctgctt
      541 gtggactgtt acttcaccga cgccgatcat ggctgggtgg tgggcgggaa atcgcaggca
      601 gccaacccga cgcgcaacga cgtccgcgcg gtggtgctac gcaccgagga cggcggccag
      661 agctgggtca acaccatcgc cggtctgagc gccgaactcc cgctaggcga gtggggatgg
      721 aaaatccaat ttctcgacga gcaggtgggc ttcgtcgcat tggagagctt caccaggggc
      781 gccatcctca aaacggtgga cggtggaaag acctggaccc gcctcaagat caatgaccca
      841 cagggtaacg ccaacctcga gggcattggg ttcatcgacg agagcactgg ctgggtgggg
      901 ggctggggct cagcctcctt ccgggacggt ttcagcagcg caaccactga tggcggcacg
      961 acctggcaga acgccaacga gatcggcgcc ttcatcaacc gattccggtt cttccacgaa
     1021 ccggtcaccg tcggttatgc gtcgggtcgc accgtctacc ggtatgcggt cgccccgctg
     1081 ccggggcccc ggcacgccgc tgcgccggta ggcctgagat tcctcgccga caacgccccc
     1141 aggcgcagcg aagcgccgat accgatcacc gtcaccgtgc ccagcaacgc cgaggcactg
     1201 acgatcaaca tttgggatcg attcggtgcg cacgtgcgcc gactgctcga cgaaccgcaa
     1261 ccggcagacg gttcgcgcac tctcgagtgg gacggcaccg acgacgccgg gaggccgctg
     1321 gacgaaggca gcttcctgat ccgggtgagc gtggacggtc ggtcggagag ccagatcgtc
     1381 tacatcacgc gctgagcgag cagcatcgcc ccaccccgct ggcacagagg agtatcgcgg
     1441 atggaaggtc gattcttcgc tccaggttcg atcattgcgt tgccgtcctt tgcccaggac
     1501 gacggcaaag cgcgggtcgc cgcggttgcg gcgaccggac ctgccgaccc gatccacgac
     1561 cctcccttag agccgcgcga tgaggcgatc tttctgctga ccgccgcggc cgagatcgaa
     1621 cacgcgctga tggtccagta ccttttcgcc gcctactcgg tgcgcgtggt cccgggtgat
     1681 ccgcacgccg acaagctcga gtcggtgcag cggctggtgg cccagatcgc ccgggaagag
     1741 atgggccatc tcgccaccgt gcaaaatctg ctgcacctgc tcggcggacc attgaacctc
     1801 aaccgggagc actctcccta tgccagtgag atctatccgt tccgcttcaa gctcgaaggc
     1861 ctgacgctcg attccctcgc caagtacgtc acagccgaga gcccgtcgaa gctgccgaaa
     1921 gatatgtcgg ccgcggataa ggcgcttgtc gaacagatct ggaagaacgc tgcccgtgcc
     1981 aacgacgggc agcaggtgcg gcacgtcggc cgcatcttcg agcggctggc gcacctgttc
     2041 ggagaagtcc tcgccgacga tgacttccgg ctggacacca tcgggcggca ggcgagggac
     2101 gaggactggg gcttcgaacc ccgcacaccc gaagacggcg agaagctgat catcgagtcg
     2161 ttcgcgaacg ctgatgtcgg ccaggtccga gacgcggcgg tgacagccgt acgcaagatc
     2221 ggcgcacagg gtgaaggctt cgatctcgag ccggccgggc ctaccagctc cgagtcacac
     2281 tttgagcggt tcttcggcat ctaccaggat gtggcggcac tgtacggcgc tggagcgatg
     2341 atcacttggc cggtggcaga gaatccgaac accacctcaa ccgagcagcc tcactcgatg
     2401 gacgccgtgg cgctggcgca agaagagctc gcaagcaagg gacgcatcac ccatccgcag
     2461 accctggcct gggcgaagct gttcaacttc cgctaccgga tgctgctcgc ccgcttctca
     2521 cacttcatgc gtctgaacca gtcgctctac ctcggcgatc ccggctcccg ccaaggtgat
     2581 cacacccccc ggggcctatt gctgatcttg acattcgacg agatgcggcg cttggcgaag
     2641 atcgccaaga agctcgtgca gctgccgaag gacgacccac cgggccaact ccacgccggc
     2701 ccgcccttcg aacttcccta cacgctcaac ctgcctgagg acgaaccgca acggtggcgc
     2761 actcacctgg atatctcacg ggccagtgtg cggctgatcc gcgaacagct ccagcctgac
     2821 gaccaggtca ccgatcgcga tgagttcctc gacgatctgg tgaagctgga cgaagacgct
     2881 caggtcgtca tgctggccct cgccgcaggc cgggagattc ccccggagag cctgccgaac
     2941 gacttccaga aggtggtccg gatcctggag gacgcggtac gcgggttcac cattggctgc
     3001 gaaccccacc ccacgaactt ctgggccggt aagacccgcg accagttcat cacgggcaac
     3061 ccgaaggtgg tcaagctgaa ccttgatggc accgtcaata ctgatccgga caccgcgccg
     3121 ctcatcaagc gactcaatag ctcctcaatc ccaagccgga tgccccgatt gcgcccgccg
     3181 gtgcccgcac cacgcgttgg attcatccgt cagtggatcg ccgatgggtg cccggacaac
     3241 aacccgcccg ggcagaccgg cctccagcgt gagcgggatc ccaggtcaga gccgctcacc
     3301 ccgtcacccg aacccctgag cttcgaatcc gacatcaaaa gcctgttccg cgaggatccc
     3361 gatcgcagct ccatgctcgc catctcagga tttgacctgc accgctacga agacgtcagg
     3421 gatcacgcgg acgacatcgc agccaaactc ggggacggca ccatgccctg cgacggcggc
     3481 tggcccccaa accgcatcac aatattcctc cggtggatcg atgacggaaa gcgtccctga
     3541 gcgccaatcg ggtcgtatct gagcggtccg gtatcccacg tgccgcgctc tgtctccctc
     3601 cctgactttc ctccgcagcc tctgactggc tgacttactc cacggcgcgg ccttccataa
     3661 agctactacc gggtgagggc ccgtgcgacg tgctcctacg atggccgaga cctccacgcg
     3721 gacacgacat agaggtacct ggtgagcgat acgccccaca tgaccgctcc gctggaggcc
     3781 gccggctcac cagcgcatac gcagcccggg gcaggcggcg agggaacagc aacggcgatt
     3841 cagggccgtt cactcggcca gatcgcctgg ctgcggctca agcgagacaa ggtcgccctc
     3901 gccggtggcg gtgtggtcgt ggccctcatc ctggtcgcga tcttcgcacc cgtgatcgtc
     3961 gcgctgctcg gacatccgcc gctggaattc cactacgaca aggtcgaccc cgacttacag
     4021 gtgccccgcg gcgacttcgg cggcatcagc ccggatttcc tgttcggagc tgaaccggtc
     4081 aacggtcgcg acgtgttcag ccgcgtcgtc tacggctcgc ggatctcgtt gctcatcgcg
     4141 ttcctcgcga ccatgctctc cgtggtgctc ggcacggtga tgggcgtgat cgccgggtat
     4201 ttcgggggct ggatcgacac cctgatcagc cggacgatgg acgtcttcct ggccttcccg
     4261 ctgttgctgt tcgcgatcgc gatctccgcg ccgctgcaga cgggcaagcc gctccggatc
     4321 tggccgttgc cgctccacct gagcgggacg cccctcaaca tcgcgatcct ggtgttcatc
     4381 atcggcttct tcaactggcc gtacatcgga cgcatcatcc gcggccaggc gctctcgctt
     4441 cgcgagcggg aattcgtcga cgcggcccgc agcatgggcg cccgcagtcc gtacatcctg
     4501 ttccgggagc tgctcccgaa cctcgtcgcc ccgatcctcg tctacgcgac gctgctgatc
     4561 ccgaccaaca tcctgttcga ggccgcgctg tccttcctcg gcgtcggggt gcaggcaccg
     4621 accgccagct ggggggcgat gctcaccgac gcctcgcgaa tctatcaggt cgacgcgtac
     4681 ttcatgctct tccccggctt ggccatcttc atcaccgtgc tcgcgttcaa cctgttc
//
LOCUS       DASVXZ010000732         2698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_531007, whole genome shotgun sequence.
ACCESSION   DASVXZ010000732 DASVXZ010000000
VERSION     DASVXZ010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531007"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VF788_15535"
     CDS             <1..391
                     /locus_tag="VF788_15535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HEX8935566.1"
                     /translation="RRATTSTDKIMYLLLTATIVTGMLNTVGSNPIGGGYNYRDTVSP
                     WFRSLFTLAPRPELMAGIPVSFQIHALIVLVLLAGWPYTRLVHVFSAPLGYLTRPYIV
                     YRSRDQHPGARRYARAWNQPAPIPPRR"
     gene            662..1297
                     /locus_tag="VF788_15540"
     CDS             662..1297
                     /locus_tag="VF788_15540"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935567.1"
                     /translation="MNGLPPKNWGQWRQQLNPSDYDERWRRIEATGANPHGEADFVFS
                     YRPHLVLDGGCGTGRVAIELARRGLDVVGTDLDQDMIGIARKKAPELTWVQADLSELQ
                     LPTRFDAIVLAGNVIPYVAGDRRQAAIEACARHLAPGGRLIAGFHLQRGWPSVADYDT
                     WCGRAGLTREARYATWDQQPFTDTDTYAVSVHRIRGSGPEDPDSEVEDHGC"
     gene            1287..2117
                     /locus_tag="VF788_15545"
     CDS             1287..2117
                     /locus_tag="VF788_15545"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8935568.1"
                     /translation="MDAELPVAAHYGLGGLPRRFLDAAVASGLDTEQLSHADLAAADE
                     FHIGGRQATIDLFEQFDLAPTLRLLDVGSGPGGASRYLAAEYGCHVTGVDLTPEYVQL
                     ATELAARTNLANLVSYQVANATDLPIPPGSFDGAYMLHVGMNVADKARLCAEVARVLA
                     PNAFFAIYDVMRIGDGDLHYPMPWADDLKISFLQTPEHYRACLEAAGFTVSSLRERRE
                     FAIASFRAMRERIAASGPPPLGLHLVMGADFSQKVSNLVSGLEQAVIAPVQIIAYLPR
                     "
     gene            complement(2186..>2698)
                     /locus_tag="VF788_15550"
     CDS             complement(2186..>2698)
                     /locus_tag="VF788_15550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HEX8935569.1"
                     /translation="CVAVPMFLAAGYHVRVDVPREVTATGRNDVTISAALGPHPLLVT
                     AMWERLRAAGWRRGDAVVLAAAGSSDRRAVADVRAAAGQLSGKVGGRVRVGFVATGAP
                     RVVPLVAGLRAAGQPRVAVASWLLAPGMFHSRLGSSGADVVAAPLGAHPLVVQRLAQL
                     AEMEAVLRSA"
BASE COUNT          484 a          956 c          842 g          416 t
ORIGIN      
        1 ccgcagggcc accacctcca ccgacaagat catgtatttg ctgctgaccg ccacgatcgt
       61 gaccgggatg ctcaacaccg tcggcagcaa cccgatcggc ggtggctaca attaccggga
      121 tacggtgtca ccctggttcc gcagcctgtt caccctcgcg ccgcggcccg agctgatggc
      181 cggcatcccg gtcagcttcc agatccacgc cctgatcgtg ctggtcctgc tggccggctg
      241 gccctacacc cgtctggtgc atgtcttcag cgcaccgctg ggctacctga ccaggcccta
      301 catcgtctac cgcagccgcg accagcaccc aggcgcccgc cgctacgccc gcgcctggaa
      361 ccaaccagca cccattccgc cccgccgctg aacatcacat gttccattta tcactggaca
      421 acgccgcgct cggtcaggtc gcgaaggcgg gatagatcag cgtcggaggc ggtgaatgtg
      481 accagcctct gctcaccctt gccaagcgga gaacccgaac ccaccttccg aatagccggc
      541 cactcacccg gtggcgactc ggaaatgcgc cgtcgtacgc cgttgcgcgg gtgactagat
      601 tgcctgtcat agcaggtgcc taccgaggga agcatctggt cagaacggag ctggtggctg
      661 cgtgaacgga ttgccgccta agaactgggg ccaatggcgc cagcagctca accccagtga
      721 ctacgacgag cgctggcggc gcatcgaggc caccggcgcg aacccacatg gcgaagcgga
      781 cttcgtgttc tcctaccgtc cgcacttggt gctggacggg gggtgcggca ccggacgggt
      841 ggccatcgag ctggcccgcc gaggattgga cgtcgtcggc accgacctcg accaagacat
      901 gatcggcata gcccggaaga aggcacctga gctgacgtgg gtacaagccg acctcagtga
      961 actccagcta ccaactcgat tcgacgccat cgtgctggcg ggcaatgtca tcccgtacgt
     1021 ggcaggtgac cgccgccaag cggcgataga ggcgtgcgcg cggcacctgg cgccgggtgg
     1081 tcggctcatc gccggattcc acctgcagag gggttggccg tctgtggccg actacgacac
     1141 atggtgtggg cgagccgggc tcactcgtga agctcgttac gccacctggg atcagcagcc
     1201 gttcaccgac acggacacct acgccgtatc agtgcaccgc attcgagggt caggcccaga
     1261 ggatccagac tcagaggtgg aagatcatgg atgctgagct gccggtggcg gcgcattacg
     1321 ggctgggcgg gttgccacgc agattcctcg acgccgcggt ggcctcgggg ctggataccg
     1381 agcagctcag ccacgctgac ctggccgccg ccgatgagtt ccacatcgga ggtcggcagg
     1441 caaccatcga cctattcgag cagttcgacc ttgcccccac cctgcgcctc ctcgatgtgg
     1501 ggagcgggcc tggcggcgcg tcgcggtatc tcgccgccga gtacggctgc cacgtcactg
     1561 gcgtggacct cacccctgag tacgtgcagc tggccaccga actggccgct cggacaaacc
     1621 tggccaacct ggtcagctat caggtagcta acgccacgga cctgccgatc ccacccggca
     1681 gcttcgacgg cgcatacatg ctgcacgtcg ggatgaacgt ggcggacaag gcgcgcttgt
     1741 gcgctgaagt ggcccgggtg ctcgccccga acgcattctt cgcgatctat gacgtgatgc
     1801 ggataggcga cggtgacctc cattacccga tgccctgggc cgatgacctg aagatcagct
     1861 tcctccagac acccgagcac tatcgcgcat gcttggaagc agccggcttc acggtcagct
     1921 cactccggga acgccgtgag ttcgcgatcg cgtcctttcg cgcgatgcgc gagcgcattg
     1981 cggccagcgg gccgccccca ctcggattgc acctggtgat gggcgccgac ttcagtcaaa
     2041 aggtctccaa tttggtcagc ggactggagc aggcagtgat cgctccagta cagatcatcg
     2101 cctatctccc gcgctgagga agccttccac caacgacatt gagcagccgc tgcgagtcgg
     2161 cgaagccgtc gacaccttcg gcacgtcaag cgctgcgcaa caccgcttcc atctcggcaa
     2221 gctgggccag ccgttggact accagcggat gcgcacccaa cggcgcggcc accacatcag
     2281 cacccgacga gccgagcctg ctgtggaaca ttcccggggc aagcagccac gacgcgaccg
     2341 cgaccctcgg ctgcccagcc gcccgcagac cagcgaccaa cggcaccact cgtggtgcac
     2401 cggtggccac gaacccgacc cgcacccggc cgccgacctt gccggacagc tggccggccg
     2461 cagcccgcac gtcggccacc gcccgccggt ccgatgagcc ggccgcggcc agcaccaccg
     2521 cgtcgccccg gcgccatccg gccgcacgga gccgctccca catcgcggtc accaacagcg
     2581 ggtgcggccc gagggctgcg ctgatggtga cgtcgttgcg gccagtggcg gtgacctctc
     2641 gcggcacgtc gacccgcacg tggtagccgg cggccaggaa catcggcacg gcgacgca
//
LOCUS       DASVXZ010000733         1565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_938170, whole genome shotgun sequence.
ACCESSION   DASVXZ010000733 DASVXZ010000000
VERSION     DASVXZ010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938170"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..572
                     /locus_tag="VF788_15555"
     CDS             <1..572
                     /locus_tag="VF788_15555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935570.1"
                     /translation="LGGPTGLGTSTTLITGLRGHDGVVASPAPCEGAPVSVLAGAAPA
                     ANHELANVVAALLPSGQQPAPKDLLQPTADQPSGLDSQLAASLLDRFVTGPTGLGTSA
                     VQLLRASTAAATSMPPSEKSLERELSCPPAVRDGRALGEEVNARLMDWTEQVGIYPGR
                     ADRLHKANIGRLVMLAHSASGRHLGLARW"
     gene            659..1522
                     /locus_tag="VF788_15560"
     CDS             659..1522
                     /locus_tag="VF788_15560"
                     /EC_number="2.1.1.255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020659345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042214 - terpene metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranyl diphosphate 2-C-methyltransferase"
                     /protein_id="HEX8935571.1"
                     /translation="MTTTTSTGNNVLHTAYQKSVAAYWNSNQDDPVNLLLGHVDGLYH
                     HHYGIGDYDPSVLEGPSDTRDDRIIKEMHRLETMQANFLLDQLGDISTGDRLLDAGSG
                     RGGTSIMAHQRFGCEVDGVTISEYQVGFANGQAERWGVADRVKFHFRNMLDTGFEDSS
                     FRGLWTNETTMYVDLFQLFNEFSRLLEYGGRYVCITGCYNDVTGGRSKAVSRIDEHYI
                     CNIHPRSQYFKALAANNLVPINVIDLTASTIPYWELRAKSSVATGIEDPFLTAYREGS
                     FHYLLIAADRI"
BASE COUNT          309 a          483 c          484 g          289 t
ORIGIN      
        1 gacttggtgg tcccaccggt ctgggcactt cgacgacttt gatcaccggc ttgcgtggcc
       61 atgacggagt ggtggcttca ccagccccgt gcgaaggagc accggtgtct gtgctggctg
      121 gggccgcgcc ggcggctaac catgagctgg cgaacgtggt cgccgcgctg ctgcccagcg
      181 ggcaacagcc ggccccgaag gaccttctac agccgaccgc agatcagcca tcggggcttg
      241 acagccagct agccgcatcg ttgctcgacc gcttcgtcac cggtcctacc gggctgggta
      301 cctcggcggt ccaactcctt cgagcaagca ccgccgccgc gacgagtatg ccccccagcg
      361 agaagtcgtt ggagcgagag ctgtcctgcc ctccggcagt gcgtgacggc agggcgctcg
      421 gtgaagaggt caacgctcgg ctgatggact ggaccgaaca agtcgggatc taccccgggc
      481 gcgccgaccg gctgcacaaa gccaacatcg ggcgcctggt gatgctcgcc cattcagctt
      541 ctggccggca tctgggcctg gctcggtggt aaccgcgaat ggcacagcac gaccgagcgg
      601 tatcacggct aaagcacgga ctgagtgctc ggctgggaac acaaggaagg agtccgctat
      661 gaccacgacc acctctaccg gcaacaacgt gctgcacacc gcctaccaaa aatccgtcgc
      721 ggcgtactgg aatagcaatc aagatgatcc ggtcaacctg ctgctcggtc atgtcgacgg
      781 gctttaccat caccattacg ggatcggtga ctatgacccg tccgtgttgg aaggtccgag
      841 tgacacccgg gatgaccgga tcatcaagga aatgcatcgg ttggagacaa tgcaggcgaa
      901 cttcctgttg gaccagctcg gcgatatttc cacgggtgac cgcctgctgg acgccgggtc
      961 cgggcggggt ggcaccagca tcatggctca ccagcgcttc ggctgcgagg tggacggtgt
     1021 caccatctcg gagtaccagg tcgggtttgc caatggccaa gccgaacgct ggggggtggc
     1081 tgaccgggtg aagttccact tccgcaacat gctggatacc ggtttcgagg acagctcttt
     1141 ccgaggcctc tggaccaacg agaccaccat gtacgtggat ctattccagc tattcaacga
     1201 gttctcccgc ctcttggaat acggtggccg ctacgtgtgt atcacgggct gctacaacga
     1261 cgtgacgggt ggccgatcca aagcggtcag ccggattgat gagcactaca tctgcaatat
     1321 tcacccgcgc agccagtact tcaaagcgct ggctgccaac aaccttgtgc cgatcaatgt
     1381 catcgatctc accgccagca caatcccgta ctgggaactg agggcgaagt cgtcggtggc
     1441 gaccggcatc gaagacccgt ttttgacggc gtaccgcgag ggcagcttcc actacctgct
     1501 tattgccgca gatcggatct gacacccagc tgtatcgaga taggggtgag gtgcgtcatg
     1561 accgt
//
LOCUS       DASVXZ010000734         9807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1248860, whole genome shotgun sequence.
ACCESSION   DASVXZ010000734 DASVXZ010000000
VERSION     DASVXZ010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9807
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1248860"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..485)
                     /locus_tag="VF788_15565"
     CDS             complement(24..485)
                     /locus_tag="VF788_15565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010315519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase N-terminal
                     domain-containing protein"
                     /protein_id="HEX8935572.1"
                     /translation="MALDPSFVGRCYPLAGTYQVGRAKIREFADAIGDDDPIYLVPDA
                     ARACGYSDVLAPPTFAMTLALRAQEELVSDPGLGLDYRRMVHGSQSFTHHRPITAGDE
                     LAATLHVDGIRAMGGSDMLTVRCEITDQAGEPVTTARTMLVIPGSDPEGHG"
     gene            complement(515..664)
                     /gene="rpmG"
                     /locus_tag="VF788_15570"
     CDS             complement(515..664)
                     /gene="rpmG"
                     /locus_tag="VF788_15570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEX8935573.1"
                     /translation="MRPKITLACEECKHRNYITKKNRRNDPDRLTIRKYCPNCNTHRA
                     HRETR"
     gene            complement(767..842)
                     /locus_tag="VF788_15575"
     tRNA            complement(767..842)
                     /locus_tag="VF788_15575"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(807..809),aa:Met,seq:cat)
     gene            complement(874..946)
                     /locus_tag="VF788_15580"
     tRNA            complement(874..946)
                     /locus_tag="VF788_15580"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(911..913),aa:Thr,seq:ggt)
     gene            complement(1052..3586)
                     /locus_tag="VF788_15585"
     CDS             complement(1052..3586)
                     /locus_tag="VF788_15585"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HEX8935574.1"
                     /translation="MAALTCTAAIAVVAVVGTAAVTPNLGTLLGGLGLAAAFGVARAL
                     AIEVEVRRDNARITPTEIPLVFGLLYLPAPVVLAAYVGVVVIARLLRRDPVSKLLFNA
                     SYATLTVAVTDLLARLIFEPSWPGLPRWTAVLAGFVIAHAITTGLTWIFIVLLDHRRP
                     GESARPVVHVYFIGLLNAALALAAAEMVRVVPWGTLLVGLLAVTVGAAYHVYYGLLRD
                     QRDLGVLNDLSLRVAAVGRGRDEDPPEMPELDEGTWSAAMELAREQLNATRVVLRRTH
                     IRNNSAHGDSAQSGPHTVVAGLALPRPLTQHDVTAVLPADPPARTGQVLRLVDSNPDP
                     VVASALAAREASEVLVAPLRGADQLLGVIEVHDRHSRLGFGAADVRLVETLASHLTTA
                     LDNCRLLAQLRYDAYHDSLTNLRNRLGFLEAATEALRRDSTPSAVIVIELGLLSAVND
                     ALGQVWGDRVVLGAGERLCRTVPEQVVTARLAGDAFAVLLTDVGSQGALQVAERVQAA
                     LSAPYAVDKLAVECTAVVGVALTGIEPTRDADVLLQRADVALRSARGADQTVRSYQAS
                     MGQLLLRRFQLVTQFRQALDTGQVDVHFQPQLALRTRRVIGVEALVRWQHPEFGMVDP
                     AEFVTLVETTGLINPLTDYVLDRSLAQCRSWLDRGLSLAVSVNLSVRNLADAEFPCRV
                     TDALARHRVPAALLGFELTESAVMSDPERALPVLRGLHGLGVRIAVDDFGTGYSSLAY
                     LRRLPVDEVKIDKSFVLGLASDLGDLAVVRAIVELGHSLGLNVVAEGVEQDATRDQLL
                     EMGCDVAQGYLISRPLGRDRFDAWLAARTVRTPGAQNEETVLTLVP"
     gene            4252..4917
                     /locus_tag="VF788_15590"
     CDS             4252..4917
                     /locus_tag="VF788_15590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX8935575.1"
                     /translation="MPVQPQLTANGVLVPTSLVELAVQRLRSEILSGALVPGDRLIEE
                     QLTRRFGTSRAPLREALRLLGQQGLVDYLPRRGVRVAQLSPQDVDELFGLREVLERFA
                     VQIAPPVPDPLALAELANRLEVMRQAAATGATLEQAEAHRRFHLALVAMARHRHLLLV
                     YEPVILKLQLYMAANLRREAQVRSPQDGVRRHQRLFDAVATGDVEQVFAALGDHGARS
                     YFG"
     gene            5077..6471
                     /gene="atzF"
                     /locus_tag="VF788_15595"
     CDS             5077..6471
                     /gene="atzF"
                     /locus_tag="VF788_15595"
                     /EC_number="3.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006043.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004039 - allophanate hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase"
                     /protein_id="HEX8935576.1"
                     /translation="MSYVPPAFTSLVHPFRVHELRAAYATEQLRPQQVIDLVLERIAA
                     RGEDAVWISRRPDHELRRQAAELDRIRQARGLAELPLFGVPCAVKDNIDVAGLATTAG
                     CPAFSYQPTRNAYCAQRLVDAGAIVVGKTNMDQFATGLTGTNSPYGAPESALGGNLIA
                     GGSSSGSAVAVAAGLVSFALGTDTAGSGRVPAVMNGIVGCKPTRGLVSTAGVVPACRS
                     LDCVSIFTTDAADAAAVLDVVQGRDHASAWSRPVSGNASYSSHCHSRVRLAQPTGLNF
                     DGDDAMRTAFDLAVARAEEHASDLIPTTIAPLLEAGELLYHGPWVAERLTELEEFLAH
                     HPHDVLPVIRERLEAGWTFSAVDTFRAWHRLKELQRWTDQLWRSADVLIMPTVPTTMT
                     MAEATEEPVRCSTVLGRFTQFVNLLDLAALTVPTGQTTDGRPASITLIGPALSDPLLL
                     SIAHRLAEPVGGRS"
     gene            6468..7208
                     /locus_tag="VF788_15600"
     CDS             6468..7208
                     /locus_tag="VF788_15600"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEX8935577.1"
                     /translation="MIRTLTRSAAIGPVVADPYPWPYDGTVKADRVALICIDWQADFC
                     GPGGYVDRMGYDIELTRAGLPGTARMLAHARATGMLVIHTREGHSPDLSDLPANKRWR
                     SAQIGAEIGAPGPQGRILVRGEPGWKIVPEVAPLSGEVLIDKPGKGAFYATQLDLVLR
                     TKHITHIVLTGITTDVCVHTTMREANDRGYECLILSDCTGATELGNHTAALRMVTMQG
                     GVFGCVATSAGVIAATVAANPTGEGHDI"
     gene            7198..7935
                     /locus_tag="VF788_15605"
     CDS             7198..7935
                     /locus_tag="VF788_15605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEX8935578.1"
                     /translation="MTSDPLTAGPITVPADPGPFHCSPAHTALLIIDMQRDFVEPGGF
                     GETLGNDVSLLRSVIPPLQRVRAASRAAGMAIIHTREGHRADLTDCPPAKLNRGEPSL
                     RIGDAGPKGRILIRGEYGHDIIDELTPRTGEVVIDKPGKGAFYATELHELLQVAGITS
                     LVVTGVTTEVCVHTTVREANDRGYECLVLSDCVGSYFPEFQQAGLAMIAAQGGIFGWV
                     APSAVYLDALSALCPAAVGAATGEEWS"
     gene            7942..9564
                     /locus_tag="VF788_15610"
     CDS             7942..9564
                     /locus_tag="VF788_15610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020641321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HEX8935579.1"
                     /translation="MSIRAKDNRTTGQLRWWVSGDLNAAFGLGFNVLVNVLVLASLCV
                     GVVQIPKGDVFGIILPALGIQLLIGNGYYTFLARRLARRENRSDVCAMPYGPSVPHMF
                     IVTFVIMLPIFLTTKDPIRAWEAGLAWSFIIGLIVLIGAFVGPYIRRFTPRAALLGTL
                     AGISIAFISMRPAAQMWQALWIALPVFMIIVIGFFTGRKLPGNIPIGLAALLVGTAIG
                     WIGGYMSPPDVVAAAKDVAIGLPSFNLGRLIHGLSAVAPLLATAIPLGIYNFCEGMTN
                     VESAAVARDNYNLRSVLLADGTGAVVGAALGSPFPPAVYIGHPGWKEAGGRTTYSLVS
                     GVVIALMCFLGLFGLLGALIPLPAIVPILLYIGLLIGAQAFVSVPKAHAVAVVLAVIP
                     NVAAWATGQIDNVLNAAGTSAAKVGTDALAKAGVVYDGLKSLGGGAILAGMLLGAIAA
                     FVIDKRYYWAAGYCAAGAALSFIGLIHGEQVAWAASPGVALGYLLATVVCLAFSFGST
                     PAPAQMPDEHPPASAPIPQAPAPATVTTEPAR"
     gene            9561..>9807
                     /locus_tag="VF788_15615"
     CDS             9561..>9807
                     /locus_tag="VF788_15615"
                     /inference="COORDINATES: protein motif:HMM:NF022968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtzH-like domain-containing protein"
                     /protein_id="HEX8935580.1"
                     /translation="MTATPDCTEVEVNRPAIVADVRAAFTRYEVALATNDTATLNELF
                     WDNPASLRFGIAERQRGAAEIHDWRQKHGEVPPRRQLH"
BASE COUNT         1675 a         3369 c         3199 g         1564 t
ORIGIN      
        1 gacgtcggtg cagcaacgcc gactcacccg tgcccctctg ggtccgagcc ggggataacc
       61 agcatggtcc gggccgtcgt caccggctct ccggcttggt cggtgatctc acagcgcacg
      121 gtgagcatgt cacttccccc catcgcgcgg atgccatcga cgtgcagggt cgcagcgagc
      181 tcgtcgcctg ccgtgatcgg ccgatgatgg gtgaacgact ggctgccgtg caccatccgg
      241 cggtagtcca ggccaagccc ggggtcgctg accagctcct cctgcgcacg cagggcgagg
      301 gtcatcgcaa aagtaggcgg agcgagcaca tcggagtatc cgcacgcccg cgcggcatca
      361 ggaaccaggt agatcgggtc atcgtccccg atggcatcag cgaattcccg gatcttcgcg
      421 cgacccacct ggtaggtccc tgccaagggg taacaccgtc cgacgaagga ggggtccagc
      481 gccatctgcg caggttacct cggtacctga agactcagcg ggtctcgcgg tgcgcccggt
      541 gcgtattgca gttagggcag tacttgcgga tggtgagccg gtcagggtcg ttgcgccggt
      601 tcttcttggt gatgtagttg cggtgcttgc actcttcgca ggccagggtg atcttgggcc
      661 ggatgtcggt ggcgcgtgcc acgggtgcct ctctctccgg agctgccagt ggtgcaggcg
      721 agggatctgc ggttggacgc ctggcgcgcc aaaccagcca aaccaatggt agcggtggcc
      781 ggactcgaac cggcgacaca gcgattatga gccgcttgct cttccgactg agctacaccg
      841 cctcgccggg cgttcccctc ccacgcttga ccgagcccca atacggaatc gaaccgtaga
      901 ccttctcctt accatggaga cgctctgccg tctgagctat tggggcagca ttggtatggc
      961 gcccgagtga acgggctgta acgactctac aggactacca gaagggacga cccacgggag
     1021 gggacccgca ccgcgctcgc cggcccggca actacggaac cagggtcagc acggtctcct
     1081 cgttctgagc tccgggggtg cggacggtcc gggccgccag ccaggcgtcg aatcggtccc
     1141 gcccgagcgg gcgggagatc aagtaaccct gggcgacgtc acaacccatc tcgagcagct
     1201 ggtcccgggt ggcatcctgc tcgacgccct ccgcgacgac gttcaatccg agcgaatggc
     1261 cgagctcgac gatggcccgc acgaccgcga ggtcacccag atcgctggcc agccccagca
     1321 cgaagctctt gtcgatcttg acttcgtcga ccggaagccg ccgcaggtaa gccagcgagg
     1381 aatacccggt accgaagtca tccaccgcga tgcgaacccc caggccatgc agcccgcgca
     1441 gcaccggcag tgcgcgttcg gggtcactca tcaccgccga ttccgtgagc tcgaaaccca
     1501 ggagtgcggc ggggacccgg tgccgcgcca gcgcgtcggt gacccggcaa gggaactccg
     1561 catcggccag gttacgaacc gagaggttga ccgagaccgc cagtgacaag ccacgatcca
     1621 gccagctgcg gcactgcgcc agcgaacggt cgagcacgta gtcggtgagt ggattgatca
     1681 gaccggtggt ctcgacgagg gtgacgaact ccgccggatc gaccatcccg aattccggat
     1741 gttgccagcg caccagcgcc tcaaccccga tcacccgacg ggtacgcagg gccagctggg
     1801 gctggaaatg cacgtcgacc tgcccggtat ccagcgcctg ccggaactgg gtcactaact
     1861 ggaatcggcg cagcaggagc tggcccatgc tggcttgata actgcggacg gtctggtcgg
     1921 caccgcgtgc cgagcgcaag gccacatcgg cgcgttgcag caggacatcc gcatcccggg
     1981 tgggctcgat cccggtcagg gccacgccga ccaccgcagt gcactccacc gccagcttgt
     2041 cgacggcata gggtgcgctc agcgctgctt gcacccgctc ggccacctgc aacgcccctt
     2101 gggagcccac atccgtcagc agcacggcaa aggcatctcc ggcgagccgg gcggtgacca
     2161 cctgttccgg cacggtgcgg cacaaccgct cacccgcacc caggacgact cgatcacccc
     2221 acacctggcc cagtgcgtcg ttcaccgcgg agagcagtcc gagctcgatg acgatcacag
     2281 cggacggtgt cgagtcccga cgcagtgcct cggtcgcggc ctccaggaaa ccgagccggt
     2341 tacgcaggtt ggtgaggctg tcgtggtagg cgtcataacg aagctgggcg agtagccgac
     2401 agttgtccag tgcggtagtg agatggctgg ccagtgtctc gaccaagcgc acgtccgctg
     2461 cgccgaagcc caggcggctg tgccggtcat gcacttcgat gacgcccaga agttggtcgg
     2521 cacctcgcag cggcgccacg agcacctccg aggcttcccg cgctgcgaga gcggaggcga
     2581 cgaccgggtc cggattgctg tccaccaggc gcagcacctg cccggtccga gcaggcggat
     2641 cggccggtag taccgcggtg acgtcgtgtt gggtcaacgg gcggggcagt gcaaggccgg
     2701 ccaccaccgt gtgcggcccg ctctgtgctg aatcgccgtg ggctgaattg tttcgaatat
     2761 gggtacgccg tagcacgacg cgggtggcat tgagctgctc acgggccaat tccatggcgg
     2821 cggaccaggt gccctcatcc agctcaggca tctccggtgg gtcctcgtca cgaccgcgcc
     2881 caaccgcagc gacccgcagg ctgaggtcgt tgagtacccc gagatcccgc tggtcgcgaa
     2941 gcagtccgta gtagacgtgg taggccgcgc ccaccgtcac cgccagcaga cccaccagca
     3001 acgtgcccca cggcaccacc cgcaccatct ccgcggcggc gagtgccagg gcggcattga
     3061 gcaggccgat aaagtagaca tgaactaccg ggcgggcact ctcaccgggg cgccggtgat
     3121 ccagtagcac gatgaagatc caggtcagcc ccgtcgtgat ggcatgtgcg atgacgaacc
     3181 cggcgagcac cgcggtccat cgcggcagcc ccggccagct cggctcgaag atcaagcgag
     3241 ccagcaggtc ggtgaccgca acggtgagag tcgcatagga cgcgttgaac agcagcttgg
     3301 atacagggtc ccggcgcagc agccgggcga tgaccactac accgacataa gctgccagta
     3361 cgaccggagc aggcagataa agcagaccga acaccagcgg gatctcagtg ggagtgatcc
     3421 gtgcgttgtc acggcggacc tcaacctcga tggcgagggc tcgggccacc ccgaaggcgg
     3481 ccgccaaccc aaggccaccg agcagcgtgc caaggttcgg cgtgaccgcc gcagtgccca
     3541 ctacagcaac taccgctata gcagcagtgc aggtgagagc ggccacaaag gccctcgacg
     3601 ccatggctcg cccgcgcaag agcaaagcgc ccggcggacg ccatcttgca tgcacaggta
     3661 cctcccgcgg tggctcaagg gctgatcctc gcccgcctac agcccccgat cagcgcgcac
     3721 gtgctcggtg gattgggcgg ttggcgcgga ctcagccgac ctttgccccg tgccgttctg
     3781 gcatgtaacg gccaatctcg acaccgtcgg gggaacccgc gagggcggcg gcgatggtgc
     3841 agacgggggt catcttcacc tccaaaacta ctcatggtgg gagacctgtt ggtaacacat
     3901 agtgagacgg tcattaactc actcgggtgt aggatagctg ctttcgagtt gcctcgccac
     3961 tggccccatc tggcctccac cagcgttcag ccagctacta ggaacggatg gttctctctc
     4021 ggacagtcac tgaaagccat cgatccgcgc gcgtctatca cactaaagtg gagttgaacg
     4081 gccaccccac gccgctgctg ggcggccgga gccgcttagt gcgagcaggg attcaccacg
     4141 agggagaccg gcggaatgcg gctcggtgac ccccgcgggc gctaaccgca caggacgcgt
     4201 ctggcactgt ggagctcgag cgacgtgccc gccgcgacga gggagaccgc tgtgccagtt
     4261 cagccgcagc tcaccgcgaa cggcgtcctg gtgccgacca gcctggtcga actcgcagtg
     4321 caacggctgc gcagcgagat cctcagtggt gcactcgtgc ccggtgatcg gctgatcgag
     4381 gaacagctca cccggcggtt cggcaccagc agggcaccgc tgcgcgaggc cctgcggcta
     4441 ctcggccagc agggcttggt ggattactta cccagacgcg gagtgcgggt cgcgcagctc
     4501 tcgccgcagg atgtcgacga gctgttcggc ctgcgtgagg tgctcgaacg cttcgctgtc
     4561 cagatcgcgc cgccggttcc cgacccactg gccctcgcgg agctggccaa ccggctcgag
     4621 gtgatgcggc aggccgccgc cactggagcc accctcgagc aggcagaggc acaccggcgg
     4681 tttcacctgg cgctggtagc catggcgcgc catcgccacc tgctgctggt gtatgaaccg
     4741 gtcatcctca agctgcagct gtacatggcc gccaacttgc gccgcgaggc acaggtccgg
     4801 agcccgcagg acggcgtccg gcgccaccag cggttgttcg acgccgtggc aaccggtgat
     4861 gtcgagcagg tcttcgccgc gctgggcgac cacggcgctc gctcctactt cggctgaccg
     4921 cgctcgccac tcaggccctg ctaccggcgc acggcttcga acacctcgag tcccgaacaa
     4981 cacccggtgt cccaagctcg gcgtatgcac gggcatgtaa catggatgta acaaattgaa
     5041 ctatcgggtg acatcattcg gtcgacaatc gacgaagtgt cctacgtacc acccgctttc
     5101 acctcgctcg ttcacccgtt cagggttcat gagctgcggg ccgcatacgc aacggagcag
     5161 ctgcgaccgc agcaggtcat cgatctcgtc ttggagcgga tcgccgcccg cggcgaggat
     5221 gcggtctgga tttcccgccg gcccgaccac gagctgcgta ggcaggccgc ggagctggac
     5281 cggatccggc aggcgcgcgg attggcggag ctgccgctgt tcggcgtccc ctgtgcggtc
     5341 aaggacaaca ttgacgtggc cggcctagcc accacggcgg gttgcccggc gttcagctac
     5401 cagccaaccc gcaacgccta ttgcgctcag cgactcgtcg acgccggtgc catcgtggtc
     5461 ggcaaaacca acatggacca gttcgcgacc gggctgactg gcaccaactc accatacggt
     5521 gccccggaga gcgcgctcgg cggcaatctg atcgccggtg gttccagttc cggctcagcg
     5581 gtggcggtgg ccgccggcct ggtctccttc gcgctgggta ccgacaccgc cggttcagga
     5641 cgcgtcccgg ccgtgatgaa cgggatcgtc ggctgcaagc cgacccgtgg cctcgtgagc
     5701 accgccggtg tggtgccggc ctgccgatca ctggactgcg tgagcatctt caccaccgac
     5761 gcggcggacg ccgctgcggt gttggacgtg gtgcaaggtc gtgaccacgc gtccgcgtgg
     5821 tcacgacccg tgagtggcaa tgcgagctat agctcgcatt gccactcacg ggtccggttg
     5881 gcgcagccaa ccggactgaa cttcgacggc gacgacgcga tgcgcacagc gttcgacctc
     5941 gctgtggccc gcgccgagga gcatgccagc gatctcatac cgaccacgat cgccccgctg
     6001 ctcgaggctg gcgaactgct gtaccacggg ccgtgggtcg cggagcggct aaccgagctg
     6061 gaggaattcc tcgcccacca tccccatgac gtcctgccgg tgatccggga aaggctcgag
     6121 gccggctgga cgttcagcgc ggtggacacc ttccgcgcct ggcaccggct caaggagctg
     6181 caacgctgga ccgaccagct ctggcgcagt gccgacgtgc tgatcatgcc gaccgtaccg
     6241 accacgatga ccatggccga agcgaccgag gaacccgtgc gatgcagcac ggtgctcggc
     6301 cgcttcaccc agttcgtcaa cctgctcgac cttgcggcgc tcaccgttcc gaccggtcag
     6361 accaccgacg gccggccggc cagcatcacc ttgatcggtc ccgcgttatc cgaccctctg
     6421 ctgctgtcca tcgcgcaccg gctggccgaa ccggtaggag gacgatcatg atccgtaccc
     6481 tcacccgatc cgccgctatt gggccggtcg tcgccgaccc ctacccctgg ccctacgacg
     6541 gcaccgtcaa ggccgaccgg gtcgcattga tctgcatcga ctggcaggcc gacttctgcg
     6601 ggcccggtgg gtacgtcgac cggatgggct acgacatcga gctgacccgc gccggcctgc
     6661 cgggaactgc ccggatgctc gcgcatgcca gagccaccgg catgttggtg atccacaccc
     6721 gggagggtca ctcacccgac ctgtccgacc tgccggccaa caaacggtgg cgctcggcac
     6781 agatcggcgc cgagatcggc gcgcccggcc cgcagggccg gatcctggtg cgcggcgagc
     6841 caggctggaa gatcgtgccc gaagtagccc cgctatccgg tgaggtgctg atcgacaagc
     6901 cggggaaggg cgccttctat gccacccagc tcgacctggt gctgcgcacc aaacacatca
     6961 cgcacatcgt gctgaccggg atcaccaccg acgtctgtgt ccacaccacc atgcgcgagg
     7021 ccaacgaccg gggctacgag tgcctgatcc tctccgactg cactggggcg accgagctgg
     7081 gcaaccacac tgcggcgctg cggatggtca ccatgcaggg cggggtcttc ggctgcgtgg
     7141 ccacctccgc gggagtaatc gccgccacgg tagctgccaa ccccacagga gaaggtcatg
     7201 acatctgacc cgcttacggc tggcccgatc accgtgcccg ccgatcccgg ccctttccac
     7261 tgcagccccg cacacaccgc gctcctgatc atcgatatgc agcgggactt cgtcgaacca
     7321 ggggggttcg gcgagacgtt gggcaacgat gtgagcctgc tgcgatcggt gatcccgccg
     7381 ctgcaacgag tgcgggccgc cagccgagcc gccgggatgg ccatcatcca cactcgagag
     7441 ggacaccggg ccgatctgac cgattgcccg cccgccaagc tcaaccgtgg cgagccatcg
     7501 ctgcggatcg gcgacgccgg ccccaaaggc cggatcctga tccgcggcga gtacggccac
     7561 gacatcatcg acgagctcac tccgcgcacc ggcgaagtcg tgatcgacaa acccggcaag
     7621 ggggcgttct acgccacgga gttacacgaa cttctccagg tagccgggat caccagcctg
     7681 gtcgtcaccg gcgtcaccac cgaggtgtgt gtgcacacca cggtccggga ggccaacgac
     7741 cgcggctacg agtgcctggt gctctccgac tgcgtcggct cctacttccc ggagttccag
     7801 caggccgggc tggcgatgat cgccgcgcag ggcggaatct tcggctgggt cgccccgtct
     7861 gcggtctacc tcgacgcact cagcgcgctg tgcccggccg cggtcggtgc agccaccggt
     7921 gaggaatgga gctgatcgct gatgagcatc cgagccaagg acaacagaac caccggccag
     7981 ctgcgctggt gggtcagcgg tgacctcaac gcggcgttcg gtctcgggtt caacgtgctg
     8041 gtgaacgtcc tggtgctggc gtcgctgtgc gtgggcgtcg tgcagatccc caagggtgac
     8101 gtgttcggga tcatcctccc cgcgctgggg atccagctac tgatcggcaa cggctactac
     8161 accttcctgg cgcgtcggct ggcccggcgg gagaaccgca gcgatgtctg cgcgatgccc
     8221 tacggcccga gcgtgccgca catgttcatc gtgaccttcg tgatcatgtt gccgatcttc
     8281 ctgaccacca aggatccgat cagagcctgg gaggccgggc tggcatggtc gttcatcatc
     8341 gggctaatcg tgttgatcgg cgcgttcgtg ggcccttaca tccgccggtt caccccgcgg
     8401 gcggcgctgc tcgggacgtt ggccggtatc tcgatcgcgt tcatctcgat gcgacctgcg
     8461 gcccagatgt ggcaagccct gtggatcgcg ctaccggtat tcatgatcat cgtgatcggt
     8521 ttcttcaccg gccgcaagct ccccggcaac atcccgatcg ggctggccgc gttgctggtc
     8581 ggcaccgcga tcggctggat cggcggctac atgtcgcctc ccgacgtggt ggcggcggcc
     8641 aaggacgtcg ccatcggcct gccgagtttc aatctgggtc ggctgatcca cggcctctcg
     8701 gctgtggcgc cgctgctggc caccgcaatc ccgctgggca tctacaactt ctgcgagggc
     8761 atgacgaatg tggagagcgc tgccgtcgcc agggacaact acaacctgcg cagcgtgctg
     8821 ctcgccgatg gcaccggcgc ggtggtcggc gccgcactgg gcagcccctt cccgcccgcc
     8881 gtctacatcg ggcacccggg ctggaaggag gccggtggcc ggaccacgta ctctctggtg
     8941 tccggcgtgg tcatcgcgct gatgtgcttc ctcgggctct tcgggctgct tggcgcgctg
     9001 atcccgctgc cagccatcgt gccgattctg ctctacatcg ggctgctgat cggcgcgcag
     9061 gcattcgtct cggtgcccaa ggcgcacgcg gtggcggtgg tcctggcggt gatccccaac
     9121 gtcgcggcct gggccaccgg tcagatcgac aacgtgctca acgcggccgg caccagcgcg
     9181 gccaaagtcg gtaccgacgc cctcgccaaa gccggagtcg tctatgacgg cctgaagagc
     9241 ctgggcggtg gcgcgatcct ggccggcatg ctgctcgggg cgatcgccgc gttcgtgatc
     9301 gacaagcgct actactgggc ggccgggtac tgcgcagctg gcgcggcact gtcattcatc
     9361 gggctgatcc acggtgagca ggtcgcctgg gctgccagtc ctggcgtcgc gctcggctac
     9421 ctgctcgcaa cggtggtctg cctcgccttc tccttcggca gcaccccggc acccgcccag
     9481 atgcccgacg agcacccccc agcgtccgcc ccgatcccac aagctcccgc tccagcaacg
     9541 gtcaccaccg agccggcccg gtgaccgcga caccggattg caccgaggtc gaggtcaacc
     9601 ggccggcgat cgtggcggac gtccgcgctg cgttcacccg atatgaggtc gccttggcga
     9661 ccaacgacac cgcgacactg aacgaactgt tctgggacaa ccccgcgagc ctccggttcg
     9721 gaatcgctga gcgccagcgg ggtgccgccg agatccacga ctggcgacag aaacacggcg
     9781 aggtgccgcc aaggcggcag ctacatg
//
LOCUS       DASVXZ010000735         3191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_263665, whole genome shotgun sequence.
ACCESSION   DASVXZ010000735 DASVXZ010000000
VERSION     DASVXZ010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263665"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1333
                     /locus_tag="VF788_15620"
     CDS             <1..1333
                     /locus_tag="VF788_15620"
                     /inference="COORDINATES: protein motif:HMM:NF025182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4185 domain-containing protein"
                     /protein_id="HEX8935581.1"
                     /translation="IPGPWAKGRFVTQSCAGFGGIIQSSFGAAGRGDFEVLVDETHGA
                     VVHYWHLSAKPDEVWIRINRFTILERHPLVDHRAQKIVQLTGEFDREGWNGKGTPRFA
                     YNRTRSRFGIIGTDLGVSFAHRDRLYFLFGDTGRLGYNDPNHDDAIAFCTDQTADGGL
                     KLTFLPQPPLVPAIGQGAFEVPLDGISWNGSMYGFFSTDHRLVGKYVMMGRSVLARSD
                     DNGYDFRLLYEVSRYKFINVSAMIVDAHQHGLPGDGPQLVTFGSGRYRSSDVYLAVKP
                     AAKLEEQGGFLFYAGGRDQPAWSSAEEDAVPLFGEGCIGELSVRWNPLLGAWICLYNA
                     DWPADRIAAGGIVMRWSRRPFGPWSVGDLVFSVKDGLGKFMHLPGADHTESTFPVDRR
                     DDLGGMYGPYQIPQYAHRSNDGNGVQIYFTMSTANPYQAMLMTVGIPELPA"
     gene            1699..2330
                     /locus_tag="VF788_15625"
                     /pseudo
     CDS             1699..2330
                     /locus_tag="VF788_15625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            2399..2650
                     /locus_tag="VF788_15630"
     CDS             2399..2650
                     /locus_tag="VF788_15630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935582.1"
                     /translation="MRRRSCRVRPPQSAFAGFRFPPDVIIVAIRWYLRYALSYRDVEG
                     HCCIEGMDVLSMAQSSESCSPCLAENYDKPGIGGLLRGL"
     gene            2825..>3191
                     /locus_tag="VF788_15635"
     CDS             2825..>3191
                     /locus_tag="VF788_15635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935583.1"
                     /translation="MIRYADSGSHRDVRLESEELMRGMRKVLAAAVVAAGLVLLPTAA
                     QATPASGVTGTILARGTMTDHFRLGADGATEFVVRQITIQPGGDTGWHYHPGTVLAVV
                     QKGTLTHTDASCRSVSYRAG"
BASE COUNT          596 a          946 c          993 g          656 t
ORIGIN      
        1 tattccggga ccgtgggcta agggcagatt cgtcactcaa tcctgcgcgg gatttggcgg
       61 tatcatccag tccagttttg gcgcggcggg tcgcggtgac tttgaggtcc tcgtcgacga
      121 gacgcacggc gcggtcgttc attactggca tctgagcgcc aagccggacg aggtgtggat
      181 ccggatcaat cgcttcacca tcctggagcg gcatccgctg gttgaccacc gggcccaaaa
      241 gatcgttcag cttactggcg agttcgatcg ggaaggctgg aacggaaaag gcaccccgcg
      301 tttcgcgtac aatcgaacac ggagcaggtt cggcatcatc ggtactgatc ttggtgtctc
      361 tttcgcccat cgcgaccgat tgtacttttt gttcggtgac accggtcgcc tgggttataa
      421 tgatccgaac catgacgacg ccatcgcttt ttgtacggac caaactgccg atggtggcct
      481 taagttgacc tttctgccgc agccaccgtt ggtacccgcc atcggtcagg gtgctttcga
      541 ggtgccgctc gacgggatca gctggaacgg cagcatgtac ggctttttca gcactgatca
      601 tcgcctggtc ggaaaatatg tcatgatggg ccgatcggta ctggcgcgat cagacgacaa
      661 cggctacgat ttcaggcttc tttatgaagt gtcacgctat aaatttatta atgtctccgc
      721 gatgatcgtg gacgcacacc agcatgggct gcccggtgac gggccacagc tcgtcacctt
      781 cggcagcggc cgataccgca gcagtgatgt ttaccttgcg gttaagccag ccgcgaagct
      841 cgaggagcaa ggaggtttcc tgttttatgc cggcggccgg gaccagccgg cttggagcag
      901 tgcagaggaa gacgcagtcc cgctttttgg tgaagggtgc atcggcgaac tgtcggtgcg
      961 ctggaatccg ctactcgggg cctggatatg tctgtataac gccgattggc cggcggatag
     1021 gatagccgct ggggggatag tgatgcgctg gtcgaggcgt cctttcgggc cgtggtccgt
     1081 gggcgacctc gtgttttcgg tgaaggacgg gttggggaaa ttcatgcatc tgccgggcgc
     1141 ggatcacacg gagagcacct tcccggttga ccgccgcgac gacttgggag gaatgtatgg
     1201 accctatcag attccgcaat atgctcaccg gtcaaatgat ggcaatggcg tgcagattta
     1261 cttcaccatg tcgaccgcga acccttatca agcgatgttg atgaccgttg gcataccgga
     1321 attgccggca tgatgtgaag accaccgggg tgttcaacca cttcgattgg tgtcgcgccc
     1381 agcgcagcgg ttacggggag cgcttcgctg accgggtctg cgctgcgctg gccgccgagc
     1441 agttctgtgg ggactgtgca cagagcaaga cgtcgttcgg gcatgctcaa gctcatgtgc
     1501 cgcatccgcc gtatccgtcc ggtcctgccg ccaccatcgg cgttcaccgg cttccggttc
     1561 cctcgggagg tgagcgtgct agcagtgcgc tcaacgccgt taagttagac agagaaatcg
     1621 atcttcatcc aagacatcgc cgcaggccac agggtcacga gacgatcttg aagattttta
     1681 acttagcggc attgagcagt gcgctggtat ctccgttatg gactctcgta tcgcgatgtc
     1741 gaagagctgc tggccgagca cggagtgcga gtcgaccacg tcacggtctt tcggtgggta
     1801 caacgcttcg caccgttgtt gatcgacgcg gcacgaccgt gtcgacatgc gccaggtgat
     1861 cgctggttcg tagatgaaac ctacgccaag gtcgctggac gggtgggtgg gtctgcctgt
     1921 accgggccat cgaccagttc ggccaggtga tcgacgtgtt ggtctccgag aaacgggata
     1981 tggcggccac ccgacaattc ttcacccgcg cactggagca caggtcgccc cccatcgagg
     2041 tcaccaccga ccgtgcggcc gcctacccgc gggtgctcga tgagctggtg cccgccgcct
     2101 gtcataccac cgagcaatac gccaacaacg cgatcgaatc ggatcacgga cggctgaagt
     2161 cccacctgcg accaatgcgt ggcctcaagc agctccgctg cgcgcgagtg atcaccgccg
     2221 ggcacgcgtt ccttcagaac atccgccgtg gccattacga agttgggacc gaggacgaag
     2281 tcaacctacg gatcccggct gcctttgaca agctcggccc ggcgatctga ccaacctgga
     2341 atgacgatct cgccggcacc gttgcgttga gggagcacag ctcgggcagg gtgagctgat
     2401 gcgtcgtcgt tcttgtcgag tacgcccgcc tcagtccgcg ttcgctggat tccgtttccc
     2461 gccagatgtg atcatcgtgg caatccgctg gtacctgcgc tacgccctgt cctaccgtga
     2521 cgtcgaaggg cattgttgca ttgaggggat ggatgtcctc tccatggccc aaagcagcga
     2581 atcatgctcc ccatgcctcg cggagaacta tgacaaaccg ggcatcggag gtctgctgcg
     2641 tggcctctag gcgggtatgt gggaccagct cgggtggacc gatcgctcaa tgcaacagtg
     2701 cccaacagca ggccccccga tgtcgcggtt gattgtatga tcacatattc ggcgatcatc
     2761 cgacctgcta accgccaatc gccaccggct gctcgtgact catggcgtgg agaagatcca
     2821 tgccatgatc cgatacgcgg atagcggcag ccaccgggac gttcgcctgg agagcgagga
     2881 actcatgcgc ggtatgcgga aagtcttggc ggcagcggtg gtggcagccg gcttagttct
     2941 gctacccacc gcggcacagg cgacccccgc ttccggagtc actggcacta tccttgcgcg
     3001 gggcacgatg acggaccact tccggctcgg cgccgacggc gcgacggagt tcgtcgtccg
     3061 gcagatcacc attcagcccg gcggcgatac cggctggcac taccaccccg gcacggtgct
     3121 cgccgtggtg caaaagggaa cgcttaccca caccgacgcc agctgccggt ccgtctccta
     3181 tcgggccggg c
//
LOCUS       DASVXZ010000736         2227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_710408, whole genome shotgun sequence.
ACCESSION   DASVXZ010000736 DASVXZ010000000
VERSION     DASVXZ010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710408"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..>2227)
                     /locus_tag="VF788_15640"
     CDS             complement(145..>2227)
                     /locus_tag="VF788_15640"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8935584.1"
                     /translation="TMVDLLLRAAYDHGDHTITHVDADGVERSQTYRDLLTDARRVAQ
                     GLTLSGLSPGATVLLQLDSSHHFFTGLWGCLIGGYVPALAAVPVDYIDGIPGSSKVEA
                     AWRALHRPPILTAAAQQPALRDFADARGWGALRIGILEDLLGNDPAQPYRHASPDDTA
                     LMFFTSGSTGAPKIVMQQHRAILSQVCGSARRLSMDRNDVVLNWMPLDHVGSVVLLHS
                     GSLEAGCPQVHVPTRYVLGEPLRWLDLLSRHHISISWAPNFAFGLVTDRLGQLGDAGY
                     RWDLSSVRAIINGGEAITARGVRRFLQMLEPAGLPANAIWPAWGMAETCSGTVYSERF
                     SVETTSDNDSFVELGRPIAGIRLRIVGDNNQVLPEGDTGTLHVQGAMVTAGYYENPAA
                     NAEVFTADGWFNTGDLGFVRHERLTLTGRAKDIIIINGANYASHEIESVVEELPFIDR
                     SYTAACAVRSPGDATDQLAVFFHLLPGTEQREALRRVRATIIREIGVNPDYLVPVDRA
                     DIPKTGLGKIQRSQLSEKYGPKLSGSAQTVAGTERTTELPAWFYRPVWSPSTISRFPG
                     QESGPVLIFLDRLGLGQEFCAILRGRGQPCVSVHQKSAEAFERIDTDTFVIDPGNGDH
                     YHRLVRAITDQALRPTHIVHLSDYAVHIQFSDTQMIRARCRAGAGWLINLLAAMAAAG
                     WDSSVCPRRRK"
BASE COUNT          452 a          691 c          682 g          402 t
ORIGIN      
        1 ccgtcgagtt cgtcgacgag gtacggtgcg ttgcgctgcg gctcatcgat ctccatgtcg
       61 agatgctggc agcgcagcca cggaatctct tgcgcggccg tcttcaggag attacgcacc
      121 agggcgcgtg tgaacgtgac acgatcactt tctgcgacgc gggcaaaccg atgaatccca
      181 gccggcggcg gccatggccg ccagcaaatt gatcaaccag ccggcacccg ctcgacacct
      241 cgcccggatc atctgcgtgt ccgagaactg aatgtggacc gcataatcgg acaagtgcac
      301 gatatgcgtc gggcgcaacg cttgatcagt gatcgcccgc accaggcggt gatagtggtc
      361 gccgttgccg ggatcgatga caaacgtgtc ggtatcaatg cgttcgaacg cctcggccga
      421 cttctggtgc actgacacac acggctggcc gcgcccgcgc aagatagcgc aaaattcctg
      481 gccgagacca agacggtcca ggaaaatcag caccggaccg gactcctgac ctggaaaccg
      541 acttatcgta gacgggctcc acaccggacg gtagaaccag gcgggtagct cagtagtccg
      601 ctcggtaccc gcaacggtct gagcagagcc ggaaagcttc ggtccgtatt tctcgctgag
      661 ctgactgcgc tggatcttgc cgaggccagt cttgggtatg tccgcgcgat cgaccggcac
      721 cagataatcg gggttcacgc cgatctcacg gatgatcgtc gcacgtaccc ggcgcagtgc
      781 ctctcgttgt tccgtcccag gtagcaggtg gaagaagacg gcgagttggt cggtcgcgtc
      841 gcccggacta cgtactgcgc aggcagcggt ataggagcgg tcgatgaagg gcagctcctc
      901 caccaccgac tcgatctcat ggctggcgta attcgcgccg ttgataatga tgatgtcttt
      961 ggctcgtccg gtgagcgtca agcgttcatg tctaacaaat ccgaggtcgc cggtgttgaa
     1021 ccagccatcc gcggtgaaga cctcggcgtt cgccgcaggg ttctcgtagt atcccgcggt
     1081 caccatcgcg ccctggacat gcagcgtacc agtgtctccc tcaggcaaga cctggttatt
     1141 gtcaccgaca atacgtagcc ggatccctgc gatcggtcga ccaagctcga cgaaagaatc
     1201 gttgtcgctg gtcgtctcca cggagaagcg ttccgagtag accgtaccgg agcatgtctc
     1261 cgccattccc caggccggcc atatggcgtt ggctggcaaa cccgcaggct ccagcatctg
     1321 aaggaaacgg cggacgcctc gcgccgtaat cgcctcgccg ccattgatta tcgcgcggac
     1381 agacgagaga tcccaccggt atccggcatc cccaagctga cccaaccggt cggtcaccag
     1441 gccgaaggca aaattcgggg cccagctgat gctgatgtga tgacggctca gaagatccaa
     1501 ccaacgcaaa ggttccccca gtacatagcg cgtggggacg tgaacctgcg ggcagcccgc
     1561 ctcgaggctt cccgaatgca gcaggacgac gctaccgacg tggtccagcg gcatccagtt
     1621 aaggaccaca tcgttgcgat ccatggacag ccgccgtgcg gatccacaga cctggctgag
     1681 aatggcgcgg tgttgctgca tcacaatctt gggagcgccg gtgctgcccg acgtgaagaa
     1741 catcaacgcg gtgtcgtccg gggaagcgtg ccggtacggc tgcgcaggat cattgccaag
     1801 gagatcctct aatatcccga tccgtagcgc gccccatccc ctggcgtccg cgaagtcacg
     1861 cagtgcgggt tgttgcgcag ctgcggtgag aatcggtggc cggtgcagag cgcgccaggc
     1921 cgcctccact ttgctggaac cagggatccc atcgatgtag tccacgggaa ctgccgccaa
     1981 cgccgggaca tatccaccga tcaggcaacc ccacaggccg gtgaagaagt ggtgactcga
     2041 gtccagctgc aacaagaccg tggccccggg gcttagtcct gagagggtca agccctgtgc
     2101 tactcggcgg gcatcagtga gtagatcccg gtatgtctgg gaacgctcaa ccccatcggc
     2161 gtcaacgtgg gtgatggtgt gatctccatg gtcgtaggcg gctcgcagca acagatccac
     2221 catcgtc
//
LOCUS       DASVXZ010000737         1963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_710560, whole genome shotgun sequence.
ACCESSION   DASVXZ010000737 DASVXZ010000000
VERSION     DASVXZ010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710560"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..862)
                     /locus_tag="VF788_15645"
     CDS             complement(<1..862)
                     /locus_tag="VF788_15645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tubulin-like doman-containing protein"
                     /protein_id="HEX8935585.1"
                     /translation="MGLSMYHSATGNQSPHCIHAIGIGKTGAYMVEALLRTGEIEDML
                     EDPRARFTGLAIDIGDQDMHELREYSNGFNARLDERGIPRERAQVRTVGLEVPDREDL
                     QTSLNRWREFLKMEYPRYYWNPNYEPWLPADLELPKAGDTFPRAIAKAIYGHYYYGEP
                     RSLEKELDAFVQSINDTKLPSLVLVFFSMAGGTGSGMVVDLARHLSNVKLGRRIPVVG
                     VATMPFSGDEEHAGGKAALFPTINELDCMLDESKNQGVMAVWGDLYKNPFTGGFLALP
                     QEHSWQRLGSY"
     gene            complement(923..1222)
                     /locus_tag="VF788_15650"
     CDS             complement(923..1222)
                     /locus_tag="VF788_15650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935586.1"
                     /translation="MALDWDAVVARYKDGADVAPIPGSSTLAVTGADEAKVYVKHRLW
                     KDSLSRANLEKAVALLEEGKMTRRSGDFVDQYRTFVADERPTTAATVLKDLGFLE"
     gene            complement(1275..>1963)
                     /locus_tag="VF788_15655"
     CDS             complement(1275..>1963)
                     /locus_tag="VF788_15655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935587.1"
                     /translation="VPQDDVFAVKGNLADTHSYVDSGIASFLARDDSVHLYETLKALN
                     WLSVPADAWHPAIRGEPNARWINVLTTREAADIGTLGGCGLVKGFSTEYIEARALGPE
                     AFGAKMLTQLAEQVGQIASSTVEPTVLQMAGPGEPMVTVVVPRASKLDLEMFFTARDT
                     YDTLSWDEKLLKHSWLLDLGVMLCEPSIRFDGMGGECIWGCACWVVVPYAAIRGEEAP
                     VESPVTVGSG"
BASE COUNT          330 a          656 c          604 g          373 t
ORIGIN      
        1 tgtaggaccc gagccgctgc caggagtgct cctggggcag cgccaggaaa ccgccggtga
       61 acgggttctt gtacaggtcg ccccagaccg ccatgacacc ctggttcttg gattcgtcga
      121 gcatgcagtc cagctcgttg atcgtcggga acagggcggc cttgccgccg gcgtgctcct
      181 cgtcaccgga gaagggcatg gtggccacac cgaccaccgg gatccgccgg ccgagcttca
      241 cgttggacag gtgcctggcg aggtcaacca ccatgccgct gccggtaccg ccggccatcg
      301 agaagaacac cagcacgagc gagggcagct tggtgtcgtt gatgctctgc acgaacgcgt
      361 cgagctcctt ttccagggac ctcggctcgc cgtagtaata gtgcccgtag atcgccttcg
      421 cgatcgctcg cgggaacgtg tcaccggcct tgggcagttc caggtcggcc ggtaaccacg
      481 gttcatagtt ggggttccag tagtagcgcg ggtattccat cttcaggaac tcccgccacc
      541 ggttgaggct ggtctggagg tcctcgcgat ccgggacctc gaggcctacc gtgcggacct
      601 gcgcgcgctc ccggggaatt ccccgctcgt cgagccgtgc gttgaatccg ttggagtact
      661 cgcgcaactc atgcatgtcc tggtcgccga tgtcgatcgc caggccggtg aaacgggccc
      721 gaggatcctc gagcatgtcc tcgatctcac cggtgcgcag gagtgcctcg accatgtagg
      781 cgccggtttt gccgatcccg atcgcgtgaa tgcagtgggg cgactggttt cccgtcgcac
      841 tgtggtacat agacaatccc atgacctggt tcctctcgtg aaactgcgct tacttttggt
      901 gcgacctgac ttgcctgagc agtcactcga ggaagccgag gtccttcagc acggtggcag
      961 cagtcgtcgg tcgctcgtcg gcgacgaagg tgcggtactg gtcgacgaag tcgccggagc
     1021 gccgcgtcat ctttccctcc tcgagcagcg ctaccgcctt ctctaaattg gctcgcgata
     1081 ggctgtcttt ccacaatcgg tgtttcacgt agacctttgc ctcgtcagca ccggtcaccg
     1141 ccaacgtgga cgatccagga atcggtgcca cgtccgcgcc gtccttgtat ctcgcgacaa
     1201 ccgcgtccca gtccagcgcc atcgcagtcc tcctcctccg gacagaaatg cgtgcagtga
     1261 ctgaccgccc caactcagcc ggaaccgacc gtcacgggcg actcgacggg tgcctcctcg
     1321 ccacggatgg cggcataggg cacgaccacc cagcaggcgc agccccagat gcactcgccc
     1381 cccatgccgt caaagcggat cgacggctcg cagagcatga ctccgaggtc tagcagccac
     1441 gagtgcttga gcagcttctc gtcccagctc aacgtgtcgt aggtgtcgcg ggcggtgaag
     1501 aacatctcga ggtcaagttt gctggcacgc ggtacgacca ccgtgaccat gggctcgccc
     1561 gggcccgcca tctgcaagac cgtgggttcc acggtgctgc tcgcgatctg cccgacctgt
     1621 tccgccaact gcgtgagcat cttggcgccg aacgcctccg gcccgagagc gcgtgcttcg
     1681 atgtactcgg tgctgaatcc cttcaccaga ccgcagccgc ccagcgtgcc gatgtccgcc
     1741 gcctcgcggg tggtgagcac gttgatccag cgggcgttcg gctcaccacg gatcgccgga
     1801 tgccaggcgt ccgccggcac tgacagccag ttcagtgcct tgagcgtctc gtagaggtgt
     1861 accgaatcgt cgcgtgccag gaagctcgcg atcccggaat ccacatacga gtgcgtgtca
     1921 gccaggttgc ctttcaccgc gaacacgtcg tcctgcggca cag
//
LOCUS       DASVXZ010000738         9367 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_579825, whole genome shotgun sequence.
ACCESSION   DASVXZ010000738 DASVXZ010000000
VERSION     DASVXZ010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9367
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579825"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(256..675)
                     /locus_tag="VF788_15660"
     CDS             complement(256..675)
                     /locus_tag="VF788_15660"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8935588.1"
                     /translation="MTQQARNFLMDLGDRAAKFTLLIRDRDSKFTNVFDAVFANEGIR
                     ALRTPVRAPQANAIAERWIATVRRELLDRMLIMNRRHLTAVLAEYVAHYNYHRPHRAL
                     SQAVPLRSLPPAALPSPLRLRRRDLLGGLIHEYAQVA"
     gene            complement(672..938)
                     /locus_tag="VF788_15665"
     CDS             complement(672..938)
                     /locus_tag="VF788_15665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935589.1"
                     /translation="MANWPGSAIRSRQIPCGRFSSKPASIPPPRRDGPSWRQFLRVQT
                     RGILATDFFCVDTLLQRLYVLFVVEHATRRAHVLRVTPTPAAPG"
     gene            complement(1170..1325)
                     /locus_tag="VF788_15670"
     CDS             complement(1170..1325)
                     /locus_tag="VF788_15670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935590.1"
                     /translation="MAVRLLYLIFRQVMAWLGLLARGAHSKNAEILVLRHEVAVLRRQ
                     VRRPRLS"
     gene            2684..3598
                     /locus_tag="VF788_15675"
     CDS             2684..3598
                     /locus_tag="VF788_15675"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8935591.1"
                     /translation="MSQTPTYDQLRDERITVAGEVDSAPIDQSGRHRLGEDLAAAPLR
                     DRSPGPEADLTEDGSVFGACHADHRGKHRPGDETSRTTAAGERSRGRGVEFAEDWSWF
                     GPAEPGRAGSGTVEAGMSPPALIERTVAILRVLAELDIRAGDRVLIMLPEGPGFTESF
                     AAVFYRDAVPLPVNPLHCASELTAAITQVHARLVLASLEQLPTLAELPTTPPILIHSS
                     RDQPEPSEHGCVPESCASIPCICVVQTFRVLATGGGVASRLASITPNDRGKPRHPTRS
                     VLSRGGPHLRVGCRSLSLAHHRHQRGDA"
     gene            complement(3715..4221)
                     /locus_tag="VF788_15680"
     CDS             complement(3715..4221)
                     /locus_tag="VF788_15680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935592.1"
                     /translation="MPQSAGSARTAASSVPGVGGAACLSFEVERLLQDVVADGFALYC
                     CGPRAAPCALVASYQWEDYLDLLTIRRFDRIITARIPAPQHARIDVFAPKVVVWAYEG
                     PPQPALRALLNLLPPTHPQAPTSAYPAPAALHTPRAEQRPLSIQLPASPRAENRAARL
                     IATMAPRS"
     gene            complement(4468..4740)
                     /locus_tag="VF788_15685"
     CDS             complement(4468..4740)
                     /locus_tag="VF788_15685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935593.1"
                     /translation="MNGPDMLRAAAHALSDRAELDHGPALAGLLRNRAVDMEHNIALW
                     RRTGQDVPALVEKHYGVYLTVARTVFAENVRAVKTPETITIQDKVS"
     gene            complement(5003..5210)
                     /locus_tag="VF788_15690"
                     /pseudo
     CDS             complement(5003..5210)
                     /locus_tag="VF788_15690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
     gene            complement(5420..6163)
                     /locus_tag="VF788_15695"
     CDS             complement(5420..6163)
                     /locus_tag="VF788_15695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935594.1"
                     /translation="MSDTNGHGQSGIGAAIAPVGPVMLVRYRAGVTGHTAHPVHLVPM
                     PDQRVTGAVGTLCGALLDLEKIEVLSSSQGMPCTMCLLTQLNATTRAGQAPMGSSENR
                     GAEHRNEGTYQAWGWPVTQHRDQIRLNLNRDVSAIAIPTLLSTELTQLLTTRHCAPAV
                     LAHPYAPEHHIVLTGERYGGSLPWPPKVHHLTGTLMLPPTTTHRGPITWIQPPRQHSL
                     RLTREIDVFGALRTILSNPPLDRLNITFV"
     gene            7040..7441
                     /locus_tag="VF788_15700"
     CDS             7040..7441
                     /locus_tag="VF788_15700"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8935595.1"
                     /translation="MSSWSPQEPALTAVLTPPHPDTTVCTLRGTINPTTTFILKGALI
                     TAQREANTHLIIDLSAVTSIDLAGLSALLEARHYHHINGRGRLAVVPPVIYRAFSDPY
                     AVVGLEASFDMYPNLTKALHACTSRDAVSNP"
     gene            complement(7672..9111)
                     /locus_tag="VF788_15705"
     CDS             complement(7672..9111)
                     /locus_tag="VF788_15705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEX8935596.1"
                     /translation="MATAEPGSTASVLRSFPTRYLPAPEIRPMPDPPRATWRIIGPGV
                     IAAGVGLASGEFVLFPYIASQVGLVFVWAALVGLATQFFLNMEIERYTLATGETALTG
                     FSRFWRHWGLVFAVLTYSANLWPGWATSSATLVTYLWGGSVRWIAIGMLLAIALILTL
                     APVVYVALERAQMLKVAAVLVLVIGGSLFAIGAQTWADLPQIVTGADIPAAELGFPVL
                     LGALAFAGAGGGQNLVQSNWIRDKGFGMGKYVPRIASPVTGQPEAAPGTGFVFEPTEH
                     NLGNWRRWWSFANREQLYTFVLITFISITFTSLLAYATVFGRQGLLNDIGFLRIEGEQ
                     LTAAAGSWFGRFFWLIGAFALFAAALGIVDYTSRLAADVLKTSYLRKATESTIYFVLV
                     WALALVGCLVLLAGFAQPIVLLVISACVGAVMMVIYSALLIVLNRRVLPPQIRISKSR
                     TAMLSWSFLLFGVLSILTIITQASKLFGS"
BASE COUNT         1765 a         2888 c         3015 g         1699 t
ORIGIN      
        1 ccatcccgtg gaattgatca cgggtttacc ggccagcaac gctcacaatg caggccgact
       61 gctgatcggg cacgaccagc ggctgtacta ctcgaccttc agatccgcaa cctgtcgcgc
      121 ttgagcatag agacacccca cacgaggaag tcaagcaaat tctattccaa tgcatggagg
      181 gctcgctgca atctgatcac tagagtagca ccaacacccc agtacttcct gtgggtgccg
      241 aactggttat ccacgtcatg cgacctgggc gtattcgtgt atcagcccgc cgagcagatc
      301 gcgacgtcgg aggcgaagcg gggatggcaa tgcagctggt ggtagcgatc tcagtggtac
      361 tgcttggctc agcgcacggt gcgggcgatg gtagttatag tgcgccacgt actcggccag
      421 cactgccgtg agatggcgac ggttcatgat gagcatccgg tccagcagtt cgcggcggac
      481 ggtggcgatc catcgttcgg cgattgcgtt cgcttggggt gcccgcaccg gggtgcgcag
      541 ggcgcgaata ccctcgttgg cgaacacggc atcaaaaacg ttggtgaact tgctgtcgcg
      601 gtcccgaatc aacaacgtga acttggctgc gcggtcgccg aggtccatca gaaagttacg
      661 tgcctgctgg gtcacccagg cgccgctggg gtgggggtga ctcggaggac gtgggcgcgg
      721 cgggtcgcgt gttccaccac gaacagcacg tacaaccgct gcagcagcgt gtcgacgcag
      781 aagaagtctg tggcgagaat gccccgggtc tgtactcgca ggaattgccg ccagctgggc
      841 ccgtcgcggc gaggaggggg aattgatgcc ggcttgcttg agaatcgacc acacggtatt
      901 tgccgcgatc tgatagccga gcccggccag ttcgccatgg atgcctcggt aaccccaaga
      961 ggagttctcg gcagccagcc acagcaccaa ccggcgcaac tcggatgccg tgcgcccggc
     1021 cgccgcttcg agggcctcgg gactgagtcc agcgtcgctt caccaggtcc cggtgccacc
     1081 gcaagatggt ggccggggtg acgatccgat gcaagtcgac aggtcgggga cagcacccgg
     1141 atcagtgccg cgaagaccgc ccggtccgct caggacagtc gcggtctgcg cacctggcgg
     1201 cgcaacacgg cgacctcatg gcgcagcacg aggatctccg catttttcga gtgtgcaccg
     1261 cgggccagca gtcccagcca ggccatgacc tgccggaaga tcagatacag cagtcgtacc
     1321 gccacgaccg acgatgatgc cccccggcaa ctggccagcg atgccgcagg tcaacgccgt
     1381 ggatgagtag ttcggcactt acaccagaca gcttcaccag cattgtacgg aaggggttgt
     1441 ctgggttgcc tgacaagggg tttgtcccca gtatcgggag ccgtatcgtc cgtggtggca
     1501 gcctgcttcc ggtccgaatg ggccgcgtaa taaggaccgc cgaccgggat ggggggatac
     1561 ccggtcggcg gccagtacgc cagcttgcag ggggtagtcg ctggcgtaat cggcgaactg
     1621 ggcgcccatg cagacgtcca aacaacccgt tcggaccggc tgactcaacg tggagccggg
     1681 tcgtatggga tatctcaccg tagtcttagt gtgcgctaat ctcctgctgc tgacaaccgc
     1741 cgatgccgac taccgttaaa tcatcctggc cgccaccggc gcaatcggta ggaaccaccc
     1801 cattcctcgc catatgcatg tgctgtcgcg cttgcggctg cacattccga cggagcgcaa
     1861 ttgcaccgcg ccgctgagct taccccgggc tgttccgtga cgtgcgtttg tcaaggcgta
     1921 cagtcggtct ccatttgctg cttggcggag aagctccacc gggactgatg aaacatggct
     1981 tgtgaaacgc caccgtctta ccctggggtg ccgaccatca cagcaacatt tagcccggcc
     2041 ccagcctgat acgacaggga cactgcattc agcaagatag acatcgaaac aataccgacc
     2101 ctgagaatgt gctcgtcgag gcacggcgcg gtgacaacgg ccatctgggt caacgacatc
     2161 ggatcacctc acgccctgcc tttgacggtg acgtacacgc gggggacaca ctgcatcaca
     2221 acgctgagcc cagtggaagc cagggcggtc ccggaccacc attggcattg gtaaaacccc
     2281 tgcgcgagtg gcagaacccc ctacagccca cacccgcatc ctccacgtgg ctgggtatcc
     2341 gccacgtcac tgcatcaggc cggcggcgca gggaagaggc aatctcctcg gtcctgtcac
     2401 agtgccggga gttacggtga atcaatctga gtgataatga tgcctatcag ggcgaccgct
     2461 caggttgtct aattacttag agagagccga agtcgagtcc aagcactccc aatgggcagc
     2521 cttatcagct aatgtagtcg gttgtgggta gccaggttcc gcatcgtatg cgtcttgttc
     2581 cacaggttct ccacaacgtg tcccctgtca gtgcacagtt gtgagtggtt atccacaccc
     2641 tgtggaggct gctgcgctcc gggtgcttct acggtggcgc gccatgagtc agacacccac
     2701 ttatgaccag ttgcgtgatg agcgcatcac tgtggccggt gaggttgact cagcaccgat
     2761 tgatcagtcc ggcaggcacc gtctcggtga ggatctggcg gctgcgccgc tgcgcgatcg
     2821 atcaccagga ccggaagccg atctcaccga ggatgggtcg gtgttcgggg cttgccatgc
     2881 agatcatcgc gggaaacacc ggcccggcga tgagacgtcc cgcaccacgg cggcaggtga
     2941 gcgatcacgt ggccggggag ttgagtttgc tgaggactgg tcctggttcg gcccggctga
     3001 gccgggccgt gcaggttcag gcactgtcga ggccgggatg agtccgcccg cactgatcga
     3061 gcgcacggtc gccatcctga gggtgctggc tgagctcgac atccgagccg gtgatcgagt
     3121 cctgatcatg ttgcccgagg gtcccggttt taccgagtcc ttcgccgccg tcttctaccg
     3181 cgacgccgtg cccctgccgg tgaatccact gcactgcgca tcagagctca ccgcagctat
     3241 tacccaagta cacgcccggc tggtgctggc ctccctagag caacttccca cccttgccga
     3301 gttgcccacc actccaccca tcctcatcca cagcagccgc gaccagcccg agcccagcga
     3361 gcacgggtgc gttccagagt cgtgtgcatc catcccgtgc atttgcgtcg tgcagacgtt
     3421 ccgtgtgttg gctaccggtg ggggtgtagc atcccgcctt gcctcgatca cccccaacga
     3481 tcgaggaaaa cctcgacacc cgacccggtc ggtgctttcc cgcggaggtc cgcacctccg
     3541 ggtcgggtgt cgatcccttt cactggcgca ccaccgccac cagcgcgggg acgcttgagt
     3601 ggacaggacc gtagcccttc agcgcacgag gagtgtccga ccggctgacc cagtcgtcct
     3661 tagcttcact accggtgccc gggaccacag ctggacactc gcgtaggtga gtcgttaact
     3721 tcgaggggcc atcgtggcga tgaggcgagc ggctcgattt tcggcgcgcg gtgatgctgg
     3781 gagctggatg ctcagggggc gttgctcggc gcggggagtg tgcagggcag ctggagcggg
     3841 gtaagcactg gtgggggcct gaggatgggt cgggggtagc aggttgagta atgcccgcaa
     3901 cgccggctgt ggtggccctt cataggccca gaccacgacc ttcggggcga acacgtcgat
     3961 ccgagcgtgc tggggtgcgg ggatccgggc ggtgatgatg cggtcgaagc gccggatggt
     4021 gagcagatcg aggtagtcct cccactggta ggaggcgacc agagcacacg gcgcggcccg
     4081 aggcccgcag cagtacaagg cgaacccgtc ggcgaccaca tcctgaagca gccgctccac
     4141 ctcgaaggat aaacacgccg caccacccac acccggcact gatgacgcag cggtcctcgc
     4201 cgagccagcg ctctgtggca tacccgcgtc acggcgaaca acccatacag accgtcgagc
     4261 aggacgtgtc tgcgggtgga tggtctccat cgctagggtg cctggagatc ccacgatgca
     4321 acctccctag cgcccgcttg ggcgctagct ggggtggttc atcggaccaa tcggtaagtc
     4381 aacgttccag gcatcggatg ctgatgcaag agcgaatgca cgatagggtc atcttcacct
     4441 gaaacgtcgc gtaccgatgc aagaccatca ggacactttg tcctggattg ttatcgtttc
     4501 gggtgttttg accgctctga cgttctcagc gaaaacagtc ctggcgacgg tgaggtacac
     4561 gccgtagtgt ttttccacta gagcgggaac gtcttgcccg gtgcgtcgcc agagggcgat
     4621 gttgtgttcc atatcaacgg cacggtttcg cagcaagccc gcgagagcag gcccgtggtc
     4681 cagctcagcg cgatcgctga gtgcgtgagc tgctgctctc agcatgtcgg gaccgttcat
     4741 gccaccacct ctgcctcggc gtcaccgggt gactgttcac tcgacggcga cacgctcgcg
     4801 tgcagcttct tcacgatcgg atccgacgct agtccgtgtt ggccgatcac aaagctcgcc
     4861 gggaagccat tccacagtaa aactcaacga tcgttacgtt agtctcaatt ttggacatcg
     4921 aagcccggcc ccaaccacag accatgaaca acgttgttgc attgtcgcgt gctggcaggg
     4981 ttgggcactg cgggtgctta gctcacatgg cgagtgtgag ttcagcgaag gcgttcggga
     5041 tccggtgccg cgggtcgaca tcaaggcccg agttcgtaat ggccacggcg gaggttctga
     5101 atgaaggcgt gaccggcgct gattactcgg gcggagcgca gccgtttgag accgtgcatg
     5161 ggccgtagtc gggatttgag gcggctgtga tctgcttcga tcgggttgtt tctgtattgc
     5221 tccatgacat gacatgcggc ggcttgactc cggtcggggt gactcaggtg gtggtcggga
     5281 cggcccaccg ggctgggctg ggtgtgatct acgcgcaccg gctgcggctc agcgccgcca
     5341 cgtccatgct tgctgaaggc ggctccttag ccgagatcgg gtaggtgctg cggcaccggc
     5401 ggcccctggc cacggcggcc tacacgaagg tgatattgag gcggtcgagt ggggggttgc
     5461 tgagtatggt gcgtagcgcc ccgaacacgt cgatttcccg ggtcagccgc agggagtgct
     5521 ggcgtggggg ttgtatccag gtgattggcc cgcggtgggt cgtggtgggt ggcagcatca
     5581 gggtgccggt gaggtggtgc accttgggtg gccagggcag gctgccccca tacctctctc
     5641 cggtgagcac gatgtggtgt tcgggggcgt aggggtgggc cagcactgcc ggggcgcagt
     5701 gtcgggtggt gaggagttgg gtgagttcgg tgctgagcag ggttgggatc gcgatggccg
     5761 agacgtcgcg gtttaggttc agtcgtattt ggtcgcggtg ctgggtcacc ggccagcccc
     5821 acgcctggta ggtcccttcg ttcctgtgct cggcgcctcg gttttcggag ctgcccatcg
     5881 gcgcttgccc ggcacgagtc gtggcgttca gctgggtgag caggcacatc gtgcagggca
     5941 tgccctggct ggagctgagg acttcgatct tttctagatc caggagcgcg ccgcacaatg
     6001 tgccgaccgc gcccgtgacg cgctggtctg gcatcggaac caggtgcacg gggtgagcgg
     6061 tgtggccggt tacgccggcg cggtaacgga ccaacatcac cggtccgaca ggtgcgatcg
     6121 cggcacctat accggattgg ccgtgcccgt tcgtgtcgct caccgcggca ctgccggatt
     6181 ggggcgcagc gctgcccgcg gcggaagggg cgcaccgcag gcagcgctgc tcggcgctgt
     6241 gtcggcggtt gtggccctca ccctgggggc gtgctggttg ggtagcgcaa gacccgggga
     6301 ccgagacgac ggtgagacgt ggcggtgagc cacctccccg gcaacgaagc gcaccgggct
     6361 gagggtgtcc ctcacctctg gcatcccatg cctccggtgc cccacagcgt cccgcccggg
     6421 tgcggcgttt cgacgtctct gtatctgcac gtgcatgaga aatgtatcgc tgccccgtgg
     6481 cggaggtcaa tgcacgtgca tttgcagacc taacgcaatc gctgctgcaa tcgcatatgc
     6541 tttgtacgtg aagagcatca cgagaaaggt tgtcttcacc agttgcgacc agcccgtttc
     6601 aggcagggac atccaactct tggcgtggcg tcaccaccgt cgtttcgaac tcgcagctgc
     6661 ctgtggtgac cgatagcgtt gatgcgacgc tggcaaaacg actgctcaac catgccatgc
     6721 agcgtggccc accgtacgaa gagcgatgct cattcactgg aaacaggaga gccaccgcgg
     6781 gaggagctcc ctatctcagc tcgatagtgg aggcctctac ttcgatagtc ccgcggatgc
     6841 acgtgcagcg aagtgtgcag ttggtcacat caggcacatt ggggtattgg acagtcgctg
     6901 ggcagtacca actgagggtt ggggcggggc ccgtccgcaa tcggtatttg cgaatgtgta
     6961 cagtcccgtt accacgcgct tctaaggggg tcacggcacg gtggggcgga cgatgaggga
     7021 tgagtcatgg tgtcataaat tgtcatcgtg gtccccgcag gaaccggcgc tcacggcagt
     7081 actgaccccg ccgcatcccg acacgacggt gtgcaccctc aggggcacga tcaatccgac
     7141 cacgacattc atcctgaaag gcgcactcat cacggcacaa cgtgaggcca acacccatct
     7201 catcatcgac ctctccgccg tcacctccat cgacttagcc ggtttgagcg ccctgctcga
     7261 agcccgtcac taccaccaca tcaacggccg cggccgctta gcggtcgtgc ccccggtgat
     7321 ctatcgagca ttctccgacc cctatgccgt cgtcgggcta gaagcctcct tcgacatgta
     7381 ccccaatctc accaaagccc tccacgcctg caccagcaga gacgctgtca gcaaccctta
     7441 accggaacga acgcaaggcc ctcgactcaa cgagcggaag cagggcgtcg cttggtcacg
     7501 tcgggcatga tcctgtgctg gcatcagcgc ctggtcgccc agaattggac atatccccat
     7561 tgcatcgggc gatcacccgt tgatgaggcg ctggcattgt tgatcgagcg tatggtcagg
     7621 gagaatcaga agtggggata tcagcggatt aggcggggca tacggcctga ctcaactgcc
     7681 gaacagcttg ctggcctggg tgatgattgt caggatcgac aggacgccga acagcaggaa
     7741 tgaccagctg agcatggccg tcctgctttt gctgattcgg atttgtgggg gtagcacccg
     7801 acggttgaga acgatgagca gtgctgagta gatcaccatc atgacggcgc cgacgcaggc
     7861 ggagatcacc agcagcacga tcggctgggc gaagccggcg agtaggacca ggcagccgac
     7921 gagcgcgagt gcccagacga gcacgaagta gatcgtgctc tcggtggcct tgcggaggta
     7981 ggaggtcttg agcacgtcgg cggccagccg gctggtgtag tccacgatgc ccagcgccgc
     8041 ggcgaagagc gcgaaggcac cgatgagcca gaagaaccga ccgaaccagc taccggccgc
     8101 tgccgtgagc tgctcaccct cgatgcgtag aaacccgatg tcgttgagca ggccctgtcg
     8161 gccgaacacc gtcgcgtacg ccagcagcga ggtgaaggtg atcgagatga aggtgatcag
     8221 cacgaaggtg tacagctgct cccggttagc gaaactccac caccggcgcc aattgccgag
     8281 gttgtgctcg gtcggctcga agacgaaccc agtgcccggg gccgcctccg gttgaccggt
     8341 gacgggactg gcgatgcgcg gcacgtattt acccatgccg aagcccttgt ccctgatcca
     8401 gttgctctgc accaggttct ggccaccacc ggcgccggcg aaagccaggg cgcccagcag
     8461 caccggaaag cccagctcgg ctgccgggat gtcggcgccg gtcacgatct gcggcagatc
     8521 agcccatgtt tgtgccccga tggcgaacaa tgatccaccg atcaccagga cgaggacggc
     8581 cgcgaccttg agcatctggg cccgttccag cgcgacatac accaccggcg cgagcgtgag
     8641 aataagcgcg atcgcgagca gcatgccgat cgcgatccac cggacactgc cgccccacag
     8701 gtacgtgacc agtgtcgccg agctggtcgc ccagcccggc cagaggttgg ctgaataggt
     8761 cagcacggcg aacaccaggc cccaatgccg ccagaatcgg ctaaagccgg tcagcgcggt
     8821 ttccccggtg gccagcgtgt agcgctcgat ttccatgttc aggaagaact gggtggccag
     8881 cccgaccaag gccgcccaca cgaacaccag gccgacctgc gaggcgatgt aggggaagag
     8941 gacgaactcc ccggaggcaa gacccacgcc agcagcaatc actcctggac caatgatccg
     9001 ccacgtcgcg cgcggcggat caggcatcgg ccggatttcc ggggcgggaa gatacctggt
     9061 cggaaacgac cggaggaccg acgccgtgct gcccggctcc gctgtggcca tgacctcacc
     9121 gtccgtatgc caccatcagc gcccgggcat tgtggtgccc acccgaactc ggcggtaaac
     9181 atcggctaac atgcgactct ggcccgctcg gggacgcagc atcccagcct ccgccaccac
     9241 caacacagga cacggagagc agcaacaccg ccgtgatacc gctcaacttc cacccgcata
     9301 cagacccaca agcactcatg gagtattacg agcagaactt tccgcgcata attgtgaatc
     9361 aattccc
//
LOCUS       DASVXZ010000739         6480 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_84258, whole genome shotgun sequence.
ACCESSION   DASVXZ010000739 DASVXZ010000000
VERSION     DASVXZ010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6480
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84258"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1923)
                     /gene="purL"
                     /locus_tag="VF788_15710"
     CDS             complement(<1..1923)
                     /gene="purL"
                     /locus_tag="VF788_15710"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015788051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEX8935597.1"
                     /translation="MGGVSGAAYSRWVRNPEQPQPYRELGLADDEYARIREILGRQPT
                     AAELAMYSVMWSEHCSYKSSKVHLRYFGETTTETMRQRMLAGIGENAGVVEVGDGWAV
                     TFKIESHNHPSYVEPYQGAATGVGGIVRDIMAMGARPIAVADSLRFGPAGAPDTARVL
                     PGVVAGIGGYGNCLGLPNIGGELAFDPSYAGNPLVNALCVGVMRVSDLHLARASGAGN
                     KIVLFGARTGRDGIGGVSVLASESFSADSGDPDAGDHGAGRKKLPSVQVGDPFAEKVL
                     IECCLELFAGDLVAGIQDLGGAGLSCATSELASAGDGGMRVDLDVVPLRAPGMTPAEI
                     LCSESQERMCAVVRPSDVDAFMAVCAKWDVTATVIGEVTGGDRLVITSQGQPVVDVPP
                     RTVAHQGPVYQRPIQRPSTQDDLQSSTPDVLARPSTTDGLRATVLRMLASPGLCSRAW
                     VTDQYDRYVRGGTVLAQPSDAGMVRIDETTQRGVAVATDCNARYCALDPYTGTQLALA
                     EAYRNVAVTGATPLAVTNCLNFGAPTDPGVMWQFEEAVRGLADGCVRLGIPVTGGNVS
                     FYNQTGDTAILPTPVIGVLGVIDDVRCRIPTGLGNIGDELWLLGDTRDEFGGSEWAHE
                     VHGHLGGRPPAVDLARE"
     gene            complement(1999..2703)
                     /gene="purQ"
                     /locus_tag="VF788_15715"
     CDS             complement(1999..2703)
                     /gene="purQ"
                     /locus_tag="VF788_15715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009157066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEX8935598.1"
                     /translation="MGTGGISTARIGVITFPGTLDDVDALRAVRHAGAEPVVLWHADE
                     DLHGVDAVVVPGGFSYGDYLRAGAIAAHQPVLRAVIDAAGRGVPVLGICNGFQILCEA
                     GLLPGALVRNAGLHFVCRDQRLRVESSATAWTGRYAPGAEIVVPLKSIEGRYVADGPT
                     LATLEGDGRVVFRYLGGNPNGAVNDVAGITSADGRVVGLMPHPEHAIDPLTGPSSDGL
                     DLFRSAVDALLASVRA"
     gene            complement(2715..2948)
                     /gene="purS"
                     /locus_tag="VF788_15720"
     CDS             complement(2715..2948)
                     /gene="purS"
                     /locus_tag="VF788_15720"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEX8935599.1"
                     /translation="MPRVVVDVVPKPEILDPQGQAIMRALPRLGLHGIREVRQGKHFE
                     LDVEDDVDAQTLHRIAGELLANPVIEDWTVRRL"
     gene            3012..3653
                     /locus_tag="VF788_15725"
     CDS             3012..3653
                     /locus_tag="VF788_15725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020632318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8935600.1"
                     /translation="MQIVHLGQSCVLVETGAARLLLDPGIYSSGFDELTELDAILVTH
                     QHPDHLDIDRLPALLAANPMAELLVDSGSAPLLAGAGVAHRVVGPGQRLELAGAGVEV
                     IGGDHGVIHPDIPVVSNNGYLIDGDAGTVLHPGDSFSAPPRPVDLLLLPTAAPWLKLS
                     EAVDYLRAVAPPLAVPIHQAILAKPEKHYGLFRELAPAGTEIQIAGHAEPLKL"
     gene            complement(3751..4611)
                     /locus_tag="VF788_15730"
     CDS             complement(3751..4611)
                     /locus_tag="VF788_15730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935601.1"
                     /translation="MLVIVILWALVAVIFLTGILAAANRIESRVGVINSALTPINSKL
                     NTVPVLTQVSDTANQIRDAASNLSPTIGRIANNASTIDASLKSVNEAVGPINKSAKAI
                     NASVLEINSAVQTIGPNLTTVLGNARSINASVHSIDGELAGTLDNVYDIRARVVTVTG
                     QADDINRSAKTIDGDTSIISNTVGTAPFRGTVNGNAYAIEQNPLLLRSGNAGVIKEMI
                     AASARKDPAAAQQGLPAFDLLPQISALGLPALPPLPTTALPSVLGDLLHGLPVLGDTG
                     DLLGQVVAPK"
     gene            complement(4658..5386)
                     /locus_tag="VF788_15735"
     CDS             complement(4658..5386)
                     /locus_tag="VF788_15735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935602.1"
                     /translation="MTTTEFSRTSSTAAPPAGSSSFARFLWIFTTIGLVVVIVVIGFL
                     IGIVRALESIDNGLFTASSSVTGATGNVQPLPNYIQTINAALTDIDTSLKPIRGQVAD
                     ATASLVSIKGTAQSIDASLKDTSGSLVNTSNSLVDTSGTLVGVSQTAQFISTSLVDTS
                     NVLLNVLGIAQSIDGTLESIQNADSRGTALVTPQVNDINNSLIGAEQDLFNINLQLFE
                     AEKHLVNICSGPVPALLPPFKCRP"
     gene            complement(5398..6030)
                     /locus_tag="VF788_15740"
     CDS             complement(5398..6030)
                     /locus_tag="VF788_15740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935603.1"
                     /translation="MILIVGVLVIGIAAALLARTLAAAQSIDKKAQTIAGNAGKIDVA
                     TNPVIELNRTNELASSILQSAKPLQGLLNTTDATARDIDGLAKSINGTAGTINGTAGT
                     INGTATTINGSARDINGSVATINGTAATINSTAKGIDNRAAAILDVAQRIDVDAANIN
                     DALARTVVIARNIRIDAGNIINQAINIEFTSRCIDAKLRLSLINPPVPAC"
BASE COUNT         1166 a         2092 c         2062 g         1160 t
ORIGIN      
        1 ttcccgagct aaatccacgg cgggagggcg tccgccgaga tgtccatgca cctcgtgtgc
       61 ccattcgctg ccgccgaact cgtcacgggt gtcgccgagc agccacagct cgtccccgat
      121 gttccccaac ccggtcggga tccggcagcg cacatcgtcg atcacgccga gcaccccgat
      181 caccggagta ggcaggatgg cggtgtctcc ggtttggttg tagaaactca cgttcccacc
      241 ggtgaccgga atgcctaagc ggacgcagcc gtcggcgaga ccgcggaccg cctcctcgaa
      301 ctgccacatc accccggggt cggtgggcgc tccgaagttg aggcagttcg tcacggccag
      361 cggggtggca ccggtgaccg cgacattgcg gtaggcctcg gccagtgcga gctgggtgcc
      421 ggtgtaagga tccagcgcgc agtaccgggc attgcaatcg gtggccaccg ccaccccgcg
      481 ctgcgtcgtc tcgtcgatgc ggaccatgcc ggcatcacta ggttgggcga gcacggtgcc
      541 gcctcgcacg tagcggtcgt attggtcggt gacccacgct cgcgagcaca acccggggct
      601 ggcgagcatc cgcagcaccg tggcgcgcag cccatccgtt gtggacggcc gtgccagaac
      661 gtctggagtg gatgattgca gatcatcctg tgtggatggt cgttggatcg ggcgttggta
      721 gaccgggccc tggtgcgcga cggtgcgggg cggcacgtcc accaccggct gaccctgtga
      781 cgtgataaca agccgatcac cgccggtaac ctcaccgatc actgtggcgg tgacgtccca
      841 ttttgcgcag accgccatga aagcgtccac atcggaggga cgcaccaccg cgcacatccg
      901 ctcctgggac tcgctgcaca ggatctcggc cggtgtcatg cccggtgccc gcaacggcac
      961 cacgtcgaga tccacccgca tgccgccgtc gccggcgctg gccagttcac tggtcgcgca
     1021 ggacaggccg gctcccccga ggtcctggat accggccacc aagtcgccgg cgaagagctc
     1081 cagacagcat tcgatcagca ccttctccgc gaatgggtca cctacctgca cgctgggcag
     1141 cttcttcctg ccggcgccat ggtccccagc gtcagggtca ccggaatcag cgctgaagct
     1201 ctcactggcc agtaccgaga ccccgccgat gccatcgcgc ccggtgcgcg cgccgaacag
     1261 gacaatcttg ttcccggcgc cgctggcgcg cgccagatgc agatcgctca cccgcatcac
     1321 cccgacacac agcgcattga ccagcgggtt acccgcatat gacgggtcga acgccagctc
     1381 gccaccgatg ttgggcaggc cgagacaatt gccgtaaccc ccgatcccgg cgaccactcc
     1441 gggcagcact cgcgcggtgt ccggcgcgcc ggccggcccg aaacgcagcg agtccgcgac
     1501 cgcgatcggc cgggcaccca tggccatgat gtcccgcacg atcccaccga caccggtcgc
     1561 cgcgccctgg taaggctcca cgtaggacgg atggttgtgg gactcgattt tgaacgtcac
     1621 cgcccagccg tcaccgacct cgacaacgcc ggcgttctcc ccgatcccgg cgagcatccg
     1681 ttgccgcatc gtctcagtgg tggtttcgcc aaaatatcgc aagtgcactt tggacgattt
     1741 gtaggagcag tgctcgctcc acatcaccga gtacatcgcc agctcagccg cagtgggttg
     1801 gcgtcccagg atctcccgga tccgcgcgta ttcgtcgtcg gccagaccta gttcgcggta
     1861 gggctgtggc tgctcagggt tgcgcaccca ccgagagtat gcggcccccg agactccacc
     1921 catcaggagg ctgcacccag tgctgagaat cccagccaga ggcagaagtg ccggattcta
     1981 ccgtgccgag caaggccgtt aggcgcgcac cgaggcgagc agagcgtcga cggcagatcg
     2041 gaacaggtcc aagccatcgc tggacggacc ggtgagcggg tcgatcgcgt gctcgggatg
     2101 tggcatcaaa ccgaccaccc gtccatcggc cgaggtgatt ccggcgacgt cgtttaccgc
     2161 gccgttcggg ttgccgccga ggtagcggaa caccacccga ccgtctccct cgagcgtggc
     2221 tagcgtgggt ccgtcggcca cataccggcc ctcgatggac ttcagcggca cgacgatctc
     2281 agcgccgggg gcgtaccgac ccgtccacgc tgtcgcactg ctctccaccc gcagccgctg
     2341 atcgcggcag acgaagtgca accctgcgtt gcgcaccaag gctccaggca gcaagcctgc
     2401 ctcacacagg atctggaaac cgttgcagat gcccagcacc gggacgccgc ggccggcggc
     2461 gtcgatcacc gcacgcaaca ccggttggtg cgccgcgatc gcaccggccc gcagatagtc
     2521 gccataggag aatccgcctg gcaccaccac agcgtccact ccatgcaggt cctcgtcggc
     2581 atgccacagc acaaccggct cggccccggc gtggcgcact gcgcgaaggg catcgacgtc
     2641 atcgagcgtc ccgggaaagg tgatgacgcc gatgcgagcc gtacttatcc caccagtgcc
     2701 catcccgagc tggctcacaa cctgcgcacc gtccagtcct caatgaccgg gttggcgagc
     2761 aactcgccgg cgatgcgatg caacgtctgc gcgtcgacgt cgtcctcgac gtcgagctcg
     2821 aagtgcttgc cctgccgcac ctcacgaatc ccgtgcaagc ccagacgggg caacgcgcgc
     2881 atgatcgctt gaccctgcgg gtcgagtatc tcaggcttcg ggacgacgtc gacgaccact
     2941 cgtggcaccc tggtgaggct acccgcgctc cgtttggacg cggcacgctg gccggatagg
     3001 aagtaggcgt tgtgcagatc gttcacttgg gccagtcctg cgtgctggtc gagaccgggg
     3061 ccgcgcggct gctgctggat cccgggatct attcctccgg tttcgacgag ctgaccgagc
     3121 tggacgcgat tctggtgacc caccaacacc ctgatcatct ggacatagac cggttgcccg
     3181 ccctgctggc ggctaacccg atggcagagc ttctggtcga ctccggctcg gcgccgttgc
     3241 tagccggcgc gggggtcgcg caccgggtgg tcggccctgg ccagcggctg gagcttgccg
     3301 gcgcaggcgt ggaggtgatc ggcggtgacc atggtgtgat ccatccggac attccggtgg
     3361 tttcgaacaa cggttacctg atcgatggtg acgccggaac cgtgctgcac cccggggact
     3421 ccttcagcgc accgcctcgt ccggtggatc tgctgctgct gcccaccgca gcgccatggc
     3481 tgaagctctc cgaggcggtg gactacctgc gcgccgtcgc tcctcccctg gccgtgccga
     3541 tccaccaggc cattctggcc aaaccggaaa agcactacgg gctgttccgc gagctcgccc
     3601 cggcgggcac cgagatccag atcgccggcc acgccgagcc actcaaactg tgatgctgac
     3661 cgaccctgac ccgatcggca caaaacaatc cgggggcgac gacctggtat ggccgacgcc
     3721 cccggatggg actatctgag aatcctgcgg ttacttcggt gccactacct gaccgaggag
     3781 gtccccggtg tcacccagca ccggcaggcc gtggagcagg tcgcccagta ccgacgggag
     3841 cgcagttgtg ggcagcggcg gcaatgccgg caatccgagc gcggagatct gcggaagcag
     3901 atcaaacgcc gggagtccct gctgtgctgc cgcgggatcc ttacgggccg atgcggcaat
     3961 catttccttg atcacaccgg cgtttccact cctcaggagg agcgggttct gctcgatcgc
     4021 ataagcattg ccgttgaccg tgccccggaa cggagcagtg cccaccgtat tgctgatgat
     4081 cgaggtgtca ccatcgatgg tcttggcgga ccggttgatg tcatcggcct gaccggtgac
     4141 ggtgacgacg cgagccctga tgtcgtacac gttgtccagc gtcccggcga gctccccatc
     4201 gatcgagtgc accgaagcgt tgatggacct ggcattacct agaaccgtgg tcaggttcgg
     4261 cccgattgtc tgcacagcac tgttgatctc cagcaccgaa gcgttgattg ccttggccga
     4321 cttgttgatc ggaccaacag cttcgttcac cgacttgagg ctggcgtcga tggtgctggc
     4381 gttgttcgca atgcggccga tagtggggct gagattcgaa gcagcatcgc ggatctgatt
     4441 agcggtgtcc gagacctgag tgaggaccgg gaccgtgttg agcttgctgt tgatcggggt
     4501 cagcgcactg ttaatgacgc cgacccggct ctcgatccgg ttggctgctg ccaggatacc
     4561 ggtcaagaag atcaccgcga ccaacgccca gaggatcacg atgacgagca tgatccccgg
     4621 gagagccgtt gatgttaaac gtcgcatcag tcacctccta cgggcggcac ttgaacggag
     4681 gcagcagagc tggcaccgga ccagagcaga tgttgacaag gtgcttctca gcctcgaaga
     4741 gctgaaggtt gatgttgaac aggtcctgct cagctccgat gagggagttg ttgatgtcgt
     4801 tgacctgtgg ggtcaccaag gctgtgcccc gactgtccgc gttctggatc gactcgagcg
     4861 tgccgtcgat cgactgagca atacccagaa cgttgagcag cacgttggag gtgtccacca
     4921 gcgaggtcga gatgaactgc gctgtctgcg aaacaccaac cagggttccc gaggtgtcga
     4981 ccagggagtt cgaggtgttg accagcgacc cggaggtgtc cttcaaggac gcgtcaatgc
     5041 tctgcgccgt gcccttgatc gacaccagcg aagcggtggc gtcggcgacc tgaccgcgga
     5101 tcggcttcag ggaggtgtcg atgtcggtca acgcagcgtt gatcgtctgg atgtagttgg
     5161 gcagtggctg aacgttaccg gtggcacccg tcaccgaact agatgccgtg aacagaccgt
     5221 tgtcgatcga ctccagcgct cggacgatac cgatcaggaa gccgatgacg acgataacga
     5281 cgaccagacc gatggtggtg aagatccaca gaaaccgagc gaacgagctg gaaccagcag
     5341 gaggcgcagc ggttgacgac gttctagaga attccgttgt tgtcatcttc catcctccta
     5401 gcaggccgga accggcgggt tgatcaagct gagacgcagc ttggcatcga tgcagcgaga
     5461 cgtgaactcg atgttgatcg cctggttgat gatgttgccg gcgtcaatcc ggatgttcct
     5521 ggcgatgacg acggtccggg ccagggcatc attgatgttc gccgcgtcca cgtcgatgcg
     5581 ctgtgcaacg tcgaggatgg cggctgcccg gttgtcgatc cccttggcgg tgctgttaat
     5641 ggtggccgca gtgccgttga tcgtcgcgac gctgccgttg atgtcccgtg ccgaaccgtt
     5701 gatcgtggta gcggtgccgt tgatggtgcc agccgtaccg ttgattgttc ctgcggtccc
     5761 gttgatcgac ttagccagac cgtcgatgtc acgggcagtg gcgtcggtcg tgttgagcag
     5821 accttggaga ggcttggcgc tctgcaagat cgaggaggca agctcattgg tccggttcaa
     5881 ctcgatgacc ggattggtcg cgacgtcaat cttgccggcg tttccggcga tggtctgcgc
     5941 cttcttatcg atgctctgtg ctgccgccag cgtccgggcg agcagggcgg ccgcgatgcc
     6001 gatgaccaag acaccgacaa tgaggatcac gacactgata acgttgaaca gtccagctcc
     6061 tccagatccc ctggaacgag catccgttct tgccaactcc accaccgctt ccttagtgca
     6121 ggatttttca tgctagggaa gcgtgctggg cggggagtta cggcgcgaac agaacgagtg
     6181 tcgccgcaac ggccgacgcc gctggacggc ctcctttctc agcacgcctc cccggggcag
     6241 ctgctcccgt caggtacgcg gcagcttgga ggatgtggac caagaaagca agtgggtgac
     6301 gcccagagac ggagcgtagt ggcgtcttcc atctctacga ccattcatac ccgtcaatgg
     6361 tggcggctaa gcgtcttttg caccactacg cttcgctgca aaccacggct ttgacgatca
     6421 cgacactggg gctgagctgc gcaaacacca agctgggtcg taacggagag tagccagcag
//
LOCUS       DASVXZ010000740         2386 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1296950, whole genome shotgun sequence.
ACCESSION   DASVXZ010000740 DASVXZ010000000
VERSION     DASVXZ010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296950"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..912
                     /locus_tag="VF788_15745"
                     /pseudo
     CDS             1..912
                     /locus_tag="VF788_15745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011027876.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
     gene            991..2076
                     /locus_tag="VF788_15750"
     CDS             991..2076
                     /locus_tag="VF788_15750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010307294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8935604.1"
                     /translation="MLLLSMLYWLVRGLLSLSAVLVRRDLSKDVELLVLRHENAVLRR
                     QVWRVRYRPVDRAWLAALSRLVPRQRWGEIFPVAPATLVAWHRRLVSWKWDDTARRQP
                     GRPATAAAIKKLVIRMATENPTWGHRRVQGQLVRLGHRIAASTVWQILHDAGLDPAPR
                     RSGPTWRQFLTAQAKAVLAVDFLHVDTVLLRRIYALIAVEHGSRRAHLMGVSAHPTGA
                     WTTQAARNLLMDLADRGTPITVLLRDRDSRFTPAFDAVFAADGIRILLSPPGAPRANA
                     ICERMIGTLRRELLDKVLIVNERHLRRILSVYLHHFNTARPHRTLGQLAPAQAETGPP
                     PVVNLADCQVRRRPILDGLIHEYHLAA"
     gene            complement(2182..>2386)
                     /locus_tag="VF788_15755"
     CDS             complement(2182..>2386)
                     /locus_tag="VF788_15755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935605.1"
                     /translation="DGSGAVAEVGVVPIILAAVVVLVDIVAISLLVVTVVLSARRGRG
                     LSCPVLPVWVGEKFVDCRSPARF"
BASE COUNT          436 a          888 c          685 g          377 t
ORIGIN      
        1 cgacgctggg gacagtgctg aggatccgat cccggtggcg atcgagacca gccgcggcct
       61 gctggtcgcc tgcctgcgcg ccaccggacg cagcgtctat gcgatcaacc cgatggtagt
      121 atcgcgctac cgggatcggt actcggtggc gcgcaaaaat ccgacgccgg tgacgcgttc
      181 gtactggcca acatcctgcg caccgacatc gccgcccacc gaccgctgcc cgccgattcc
      241 gaactcgccc aagccatcgc cgtgttggcc cgcgcccagc aagacgccgt gtgggaacgc
      301 acctgcgcgc acaacaagct gcgctcgctg ctgcgcgagt actaccccgc cctgctggca
      361 gccttcacca acaaacgcgg cggcctgctg cgccccgagg cgcgggccct gctagccgcc
      421 gcccccactc cccgcgcggc cgccacactg agcatcactc agctcgcggc cctgctgcgc
      481 cgcgctggac gccaccgcgg catcaccacc gaagccgccc ggatccagca ggtcctgcgc
      541 accgaatacc tccaccaact gcccctggtc gaagacgcct tcggccgcca agccctcgcc
      601 ctgctgcgag ctctcaacac cgcggccacc aacgccgaag acctcgccac cgccaccatc
      661 gagcacttca acacccaccc cgacgccgag atcatcacca gcctgcccgg actgggatct
      721 ctcaccggcg cccgggtctt agccgagatc ggcgacgacc gatcccgctt caccaacgcc
      781 agggcgctga aggcctacgc cggtgccgca cccgtcaccc gggccagcgg caaaagcctc
      841 accgtgaccc accgcaaagt caaaaaccaa cgcctggccg ccgtcggcta cgtctgggcc
      901 tcctccgccc taacctgtgg ggctcggaaa cacgatgcga cgtcctgacc tgcattcctg
      961 gcgtgttgcc cggtcatgga tgatcgtcgg atgctgttgt tgtcgatgtt gtactggctt
     1021 gtgcgcgggc tgctcagctt gagcgctgtg ctggtgcggc gtgacctgag taaggatgtc
     1081 gagctgctgg tgttacggca cgagaacgcc gtgctgcgcc ggcaggtctg gcgggtgcgc
     1141 tacaggcctg ttgaccgggc gtggctggct gcgctgtctc ggcttgtgcc acgtcagcgc
     1201 tggggtgaga tttttccggt tgctccagcc acgctggtgg cgtggcaccg tcggctggtc
     1261 tcgtggaaat gggacgacac cgcacgtcgc caacccggac gtcctgcaac cgcagcagcg
     1321 atcaagaagt tagtcattcg gatggcaacc gagaatccca cctggggaca ccggcgcgtg
     1381 caaggccaac tggtccggct cggccaccgc atcgcggcgt ccaccgtgtg gcagatcctc
     1441 catgacgcgg gcctcgatcc cgcgcctcgc cggtcgggtc caacctggag acagttcctc
     1501 accgcccaag ccaaggctgt cctggccgta gacttcctgc acgtagacac cgtgttgctc
     1561 agacggatct acgcgctgat cgcagtcgag catggctccc gccgggcaca tctgatgggg
     1621 gtcagcgcgc atccgaccgg ggcgtggacc acccaagccg cccgcaacct cctgatggat
     1681 ctcgccgacc gcggtacccc gatcacggtg ctgctccgag accgggactc ccggttcacc
     1741 ccagcctttg atgcggtctt cgccgcagac ggcatccgga ttctgctcag tccacccgga
     1801 gcaccccgag cgaacgcgat ctgcgaacgg atgatcggaa cactgcgccg cgagctgctt
     1861 gacaaggtct tgatcgtcaa cgaacgccac ctgcgccgga tcctgtcggt ctatcttcat
     1921 catttcaaca ctgcgcgacc acaccgcacg ctcgggcaac tcgccccggc ccaagccgaa
     1981 accggacccc caccagtggt caacctcgcc gattgccagg ttcgccgcag accaatcctc
     2041 gacgggctca tccacgagta ccacctcgcc gcatgatcga atcgcacatc acaatctgca
     2101 ggtcaaacac aaaatcgtgt attcgagccc acacggtcgc ccccgtcgtg ctgcgttcct
     2161 gcattcgcgc tgcggaccct gtcagaacct ggccggggaa cgacagtcca cgaatttctc
     2221 accgacccac accggtaaca ccggacacga taatccgcgg ccccgccgcg cagaaaggac
     2281 aaccgtgacg accagcaggg atatggcgac gatgtcgact aatacgacta cagcggcaag
     2341 gatgatgggc actacaccca cctcagcaac tgcacccgag ccatcc
//
LOCUS       DASVXZ010000741         4391 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_443485, whole genome shotgun sequence.
ACCESSION   DASVXZ010000741 DASVXZ010000000
VERSION     DASVXZ010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4391
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443485"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..812
                     /locus_tag="VF788_15760"
     CDS             <1..812
                     /locus_tag="VF788_15760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX8935606.1"
                     /translation="AEVSSRGQGAEQLLAMFEGMRAVDVANTLRELPAKRRDEVVDAL
                     DDERLADVLQELSEDEQAEVLARLGDERAADVLEAMNPDDAADLLGELAQTERERLLR
                     LMAPEESAPVRRLLSYSSDTAGGLMTPEPVVLTPDATVAEALARARDPELTPALASMV
                     FVCRPPTATPTGRYLGCAHLQRLLREPPSNLVAGVLDTELAGLGPEATLAEVTRYFAA
                     YDLVCGPVVDPEDHLLGAVSVDDLLDAALPDDWRQREAWPTPDLSGEVTGG"
     gene            847..1380
                     /locus_tag="VF788_15765"
     CDS             847..1380
                     /locus_tag="VF788_15765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010229756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEX8935607.1"
                     /translation="MPRGPRRLAPRMDPDSFARFSERIARFLGTGRFLAAQTVIVVVW
                     ITLNLVAVSLRWDPYPFILLNLAFSTQAAYAAPLILLAQNRQDDRDRVALEEDRARAE
                     RTKADTEYLARELAALRLALGEVVTRDFLRSELVRLSEHKDPGAPDPAAPERPTTARP
                     GGLRRGKRASSAPRHNT"
     gene            1426..2565
                     /locus_tag="VF788_15770"
     CDS             1426..2565
                     /locus_tag="VF788_15770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEX8935608.1"
                     /translation="MASIQTAPSVDAVRSALHGVHDPEINRPITELGMVKDVTVASDG
                     SVHVAVWLTVAGCPMRDTITSRVTKAVYTLPGVRDVQVTLVVMSDTQRTALRRQLRGT
                     AEEPRIPFAEPGSLTRVYCVASGKGGVGKSSVTVNLAAAMVDRGLSVGVVDADIYGHS
                     VPGMLGTTARPTQVEKMIMPPAAHGVKVISIGMFTKDNTPVVWRGPMLHRALQQFLAD
                     VFWGDLDVLLLDLPPGTGDIAISVAQLIPNAEILVVTTPQRAAADVAQRAGAIALQTR
                     QRLIGVVENMSWLDMPDGSRNHLFGSGGGQEVADSLTRSLGSEVPLLGQIPLDPQLRE
                     TGDAGTPLVLSDPTSPAAIVLRDIANRLATRSRGLAGKLLSVSPR"
     gene            complement(2587..2991)
                     /locus_tag="VF788_15775"
     CDS             complement(2587..2991)
                     /locus_tag="VF788_15775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sec-independent translocase"
                     /protein_id="HEX8935609.1"
                     /translation="MFNIGWGEFLILIVAGLLILGPERLPEAAAWLGRTLRQVREYAN
                     GAREQLRSELGPEFDELRAPLEDLRGLRGFNPRSFTPRSAITRHLFDDLDGDPFSDAI
                     KPNGYAAPTGRGTSVPRPLLPGERAPFDSDAT"
     gene            3195..4217
                     /locus_tag="VF788_15780"
     CDS             3195..4217
                     /locus_tag="VF788_15780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEX8935610.1"
                     /translation="MRIGVLTGGGDCPGLNAVIRAVVRKGIEVYGHEIIGFRDGWRGP
                     MDGLVQPLGLADVEHILPLGGTILRTSRTNPYRNGGAEKIKQTLAEHDVDALIAIGGE
                     DTLGVASRLNEDGITVVGVPKTIDNDLSATDYTFGFDTAVHIATEAIDRLRTTAESHH
                     RAAVVEVMGRNAGWIALHSGMAGGANAILMPERPFSVDGVCQWVLQCLRRDDAAIVVV
                     AEGAVPEGGAELLATAEVDAFGHKRLGGVGIWLADQIAERTSAESRAVVLGHIQRGGT
                     PTAYDRVLATRLGLHAVDAVHEGDTGVMVALRGTDIIRAKLSDATAAVKTVPQERRAE
                     AEVFFG"
BASE COUNT          712 a         1490 c         1495 g          694 t
ORIGIN      
        1 tggccgaggt gtcctcccgc gggcagggcg ccgagcagct gctcgccatg ttcgagggaa
       61 tgcgcgcggt ggacgtcgcc aacacgctgc gggagctgcc cgctaaacgc cgcgacgagg
      121 tggtcgacgc gctggacgac gagcgccttg ccgacgttct ccaagagctc tccgaggacg
      181 agcaggccga ggtgctcgcc cggctgggcg acgagcgcgc tgctgacgtg ctcgaggcga
      241 tgaatcccga cgatgccgct gacctgctcg gcgagcttgc tcagaccgaa cgggagcgat
      301 tgttgcggct gatggccccc gaagaatcag cgccggtccg ccggctgctg agttattcct
      361 cggacaccgc cggtggcctg atgactccag agccggtagt gctcaccccc gacgccaccg
      421 tcgctgaggc actggcgcga gcccgtgatc ctgagctgac ccccgcactg gcgagcatgg
      481 tcttcgtctg ccggccgcct acggccaccc cgaccggacg ctatctgggt tgcgctcacc
      541 tgcagcggct gctccgcgag ccgccgtcga acctcgtggc cggggtgctg gacaccgagc
      601 tggcaggcct cgggccggaa gcgacgctgg ccgaggtcac ccgatacttc gccgcctacg
      661 atctggtgtg cgggccggtg gtagacccgg aggaccacct gctcggcgcg gtgagcgtgg
      721 acgatctgct ggatgccgca ctgccggacg actggcggca gcgagaggcc tggcccaccc
      781 ccgacttgtc tggggaagtg accggtggct gagtcacgtt ggcagtattc ggcgagccgg
      841 ctcgacctgc cgcgcgggcc gcggcggctc gccccgagga tggacccgga ctccttcgcc
      901 cgcttctccg agcggatcgc ccgcttcctg ggcaccggac gattcctcgc cgcgcagacc
      961 gtcatcgtgg tggtatggat cacgctgaac ttggtggcgg tgtccttacg ctgggatcct
     1021 tacccgttca tcctgctcaa tctggcgttc tccacccagg cggcctacgc ggcacccctg
     1081 atcctgctgg cgcaaaaccg ccaggatgac cgtgaccggg tggcgctcga ggaggaccgg
     1141 gcccgtgccg aacggaccaa ggcggacacc gagtacctgg ccagggagct ggcggcactg
     1201 cgactggccc tcggggaggt ggtgacccgg gacttcctgc gttctgagct cgtccggttg
     1261 agcgagcaca aggatccggg tgcaccggat ccggctgcac cggaacggcc caccactgct
     1321 cgacccggtg gacttcgccg aggcaagcga gcctcctcgg ctccccggca caacacctag
     1381 catgggatac agacccacca ctcaaccgga aggtcggtgc catccgtggc ctccatccag
     1441 accgccccgt cggtcgacgc ggtccgaagc gctctgcacg gggtacacga ccccgagatc
     1501 aaccgaccga tcaccgaact gggcatggtc aaggacgtga ccgtggcgtc cgacggctca
     1561 gtgcacgtag cggtgtggct caccgtcgct ggctgcccca tgcgcgacac catcacctcc
     1621 cgcgtcacca aggccgtata caccctgccg ggtgtccggg acgtgcaggt gacgctggtc
     1681 gtgatgagcg acacccagcg caccgcattg cgccgccaac tgcgtggcac cgctgaggag
     1741 ccgcggattc cgttcgccga accgggatcg ctgacccggg tgtactgcgt tgcctctggc
     1801 aagggtgggg tcggcaagtc atcggtgacg gtgaacctgg ccgctgcgat ggtcgatcgg
     1861 ggcctatcag tcggagtggt cgacgccgat atctacggcc attcggtgcc cggcatgctc
     1921 ggcaccaccg cacgccccac ccaggtggaa aaaatgatca tgccgccggc cgcgcacggc
     1981 gtgaaggtca tctcgatcgg catgttcacc aaggacaaca ccccggtggt gtggcggggg
     2041 ccgatgctgc accgcgcgct gcaacagttc ctcgccgacg tgttctgggg cgaccttgac
     2101 gtgctgctgc tcgacctgcc gccgggcacc ggcgacatcg ccatctcggt ggcgcagctg
     2161 atccccaatg cggagattct cgtcgtcacc accccccagc gcgccgccgc ggatgtggcg
     2221 cagcgcgccg gggcgatcgc cctacagacc cgccagcggc tgatcggcgt ggtggagaac
     2281 atgtcctggc tggacatgcc ggacggctcg cgcaaccacc tcttcggctc aggcggtggt
     2341 caagaagtcg ctgactcgct gacccgctca ctgggcagcg aggtaccgct gctgggccag
     2401 atcccgctgg atccgcagtt gcgggagact ggtgatgccg gcacgccact ggtgctcagt
     2461 gatcccacct cgccggcagc tatcgtgctt cgtgacatag ccaaccgcct cgcaacccgc
     2521 tcgcgtggcc tcgccggcaa gctgctttcg gtaagcccta ggtagcacgg gccccgataa
     2581 tgccgctcaa gttgcgtcgg aatcgaacgg ggcacgctca cccggcagca gcggccgggg
     2641 aacggaggta ccccgtccgg tgggcgcggc gtacccattc ggtttgatcg cgtcgctgaa
     2701 ggggtcgccg tcgagatcgt cgaacagatg gcgggtaatc gcgctgcgag gagtgaaact
     2761 gcgggggttg aaacctcgca atccgcgcag atcttccaac ggcgcccgca gttcgtcgaa
     2821 ttctgggccc agctcggagc gcagctgctc gcgggccccg ttggcgtact cccggacctg
     2881 ccgcagcgtg cggcccaacc acgccgcggc ctccggcagc cgttctgggc cgaggatcaa
     2941 cagcccggcg acgatgagga tcagaaattc cccccagccg atgttgaaca cccgcacacc
     3001 tccctcacca gcccggcccg cgcacccagc ctagccacgt atgctgcgcg atgctcaccg
     3061 tcccggtggg cgttgtctag gttgacgccg ggcggagtca ccaggccacg tccgaccgga
     3121 gcaattgccc tttcctcacg caccgtggaa cctggcgagg agtgtcaatc cgggacgggc
     3181 tggggggaat cgacatgcgc attggggtgc tcaccggcgg tggtgattgt ccaggtctca
     3241 atgcggtgat ccgggcagtg gtccgcaagg gcatcgaggt ctacgggcac gagatcatcg
     3301 gtttccggga tggctggcgg ggtccgatgg atgggttggt tcagccgctc ggtctggctg
     3361 acgtagagca catcctcccg ctcggcggca ccatcctgcg cacctcgcgc actaacccct
     3421 accgcaacgg cggcgctgag aagatcaagc agacgctcgc cgagcatgat gtggatgcgc
     3481 tgatcgcgat cggcggtgaa gacaccctgg gggtggcgag ccggctgaac gaggacggaa
     3541 tcaccgtggt cggcgtgccg aagaccatcg acaacgatct gagcgccacg gactacacct
     3601 tcgggttcga caccgcggtg cacatcgcga ccgaggcgat cgaccggctg cggaccaccg
     3661 ccgaatcgca ccaccgggcg gccgtcgtcg aggtgatggg ccgcaatgcg ggctggatcg
     3721 cgctgcactc cgggatggcc ggcggggcca atgccatcct gatgccggaa cggcccttct
     3781 cggtggacgg ggtgtgccag tgggtcctgc aatgccttcg gcgggacgac gccgcgatcg
     3841 ttgtggtcgc cgaaggtgcg gtacccgagg gtggcgcgga gctgctcgcc accgcggagg
     3901 tcgacgcctt cggccacaag cgcctcggcg gagtcggcat ctggttggcc gaccagatcg
     3961 ctgagcgcac cagtgccgaa tcccgcgctg tggtgctggg acacattcag cgcggcggca
     4021 cacccactgc ctacgaccgg gtgttggcca cccgattggg cctgcatgcg gtcgacgcgg
     4081 tgcacgaggg cgacactggc gtgatggtcg cactgcgcgg caccgacatc atccgggcga
     4141 aactgtccga cgccaccgca gcagtgaaaa cagtgccaca ggagcgccgg gcagaggccg
     4201 aggtgttctt cggttgaagg gcgactcggc ggcgcgaccc ccgatgacca cagcgaccac
     4261 cagcgccgcg cagcagtaag tctttgctcc ggtataagtt gcccctcaga ccactgcgga
     4321 aggctgacta ccgtgggcgg ctcgggccag atcggcgaga acctcgcggt gacggtcgcg
     4381 ttcccagctc t
//
LOCUS       DASVXZ010000742         2943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1786218, whole genome shotgun sequence.
ACCESSION   DASVXZ010000742 DASVXZ010000000
VERSION     DASVXZ010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1786218"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1270
                     /locus_tag="VF788_15785"
     CDS             <1..1270
                     /locus_tag="VF788_15785"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8935611.1"
                     /translation="EPRPELTTGLDAILTSANAWQTDYAEPTIAAVTASGPAGANGDT
                     AVGKARFDALRAELERQRTGLVQARDNARDNLDSAANTLLVACLIIGAGLLVLLSMTG
                     TWVRRTITTPLERLSDEVRTVAAGQFERHVTGQGPRELVQLATDIESMRRQILAELTK
                     VQELNQRLDAQTAELRRSNSDLEQFAYVASHDLQEPLRKVSSFCELLAKRYGGKLDDR
                     ADQYIHFAVDGARRMSVLINDLLAFSRIGRTATGKWSQLDCSALLTQALRNLDEIIIQ
                     TGATITHDPLPTVVGEASLLTTVFQNLIGNAIKFRGEQPPQIHIAAAVDGDFWTFRVQ
                     DNGIGIDPAYADKIFAIFQRLHSKEAYPGTGIGLALCRKIIDYHHGRIWLDSATTSGS
                     AFSFTLPTIADNTEEPTAMNEPVMTATSDD"
     gene            1263..1703
                     /locus_tag="VF788_15790"
     CDS             1263..1703
                     /locus_tag="VF788_15790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8935612.1"
                     /translation="MTEPQREVHVLLVEDDPGDVLMTQEAFEHHRLGNPLHVVSDGAA
                     ALRFLRREGEHTDAPRPGLILLDLNLPLMNGREVLAAIKSDDQLRSIPVVVLTTSQAE
                     EDIVRSYDLHANAYVAKPVDFSRFMEIIRQIDDFFVTVVRLPPT"
     gene            2162..2782
                     /locus_tag="VF788_15795"
     CDS             2162..2782
                     /locus_tag="VF788_15795"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005154159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEX8935613.1"
                     /translation="MARYFSVHPVDPQRRAIGQVIELVRGGGLIAYPTDSCFALGCQL
                     GNSGGLDRIREIRDLDDKHHFTLVCRDFAQLGQFVHVSNAAFRLIKASTPGSYTFILP
                     ATKEVPRRLLRPKKKTVGVRIPQHAVAQALLAELDEPLLSSTLLLPDEPEPLTQGWEI
                     KERLDHAVDAVIDSGDCGTEPTTVIDFCGSEPEIVRRGAGDPSRFE"
BASE COUNT          547 a         1012 c          866 g          518 t
ORIGIN      
        1 cgaaccacgc cctgagctga ccaccggcct ggacgcgatc ctcacttcgg cgaacgcctg
       61 gcaaaccgac tacgccgaac caacgatcgc cgcagtgacc gcctccgggc cggctggcgc
      121 caacggtgac accgcggtgg gcaaggccag gttcgatgcc ctccgagccg agttagagcg
      181 ccagcgaacc gggctcgtcc aggctcgcga caacgctcgt gacaacctgg actccgccgc
      241 gaataccttg ctcgtggcct gtctgatcat cggggcgggc ttactggtgc tgctcagcat
      301 gaccggaacc tgggtgcgtc gaaccatcac cacccctctc gagcggctca gcgatgaggt
      361 ccgcaccgtc gccgccggac agttcgagcg tcacgtcacc gggcaggggc cccgcgaact
      421 cgttcagctg gccactgaca tcgaaagcat gcgccgccag atcctggccg aactgaccaa
      481 agtgcaggaa ctcaaccaac gcctggacgc ccagaccgcc gagctgcggc gctccaattc
      541 cgacctcgag cagtttgcct acgtcgccag ccacgacctg caggagccgc tgcgaaaagt
      601 gtcgagcttc tgcgagttgc tggctaaacg ctacggcggc aaactcgacg accgcgccga
      661 ccagtacatc cacttcgccg tggacggcgc tcgccggatg agcgtgctga tcaacgatct
      721 gctcgcgttc tcccgaatcg gacgcaccgc caccggcaag tggtcgcaac tggactgctc
      781 ggcgttgctc acccaggcgc tgcgcaatct cgacgagatc atcatccaga ccggcgcgac
      841 gatcacccat gacccgctac ctaccgtggt cggcgaggcg tccctgctca ccacggtatt
      901 ccaaaacctg attggcaacg cgatcaagtt ccgcggcgag caaccgccac agatccacat
      961 cgcagccgcg gtcgacggcg atttctggac gtttcgggtg caggacaacg ggatcggcat
     1021 cgatccggcc tacgcggaca agatcttcgc catcttccaa cggctgcaca gcaaggaggc
     1081 ctaccccggt accggcatcg gactggcgct gtgccggaag atcattgact accaccacgg
     1141 acggatctgg ctcgactccg ccaccacgtc cggatctgca ttctctttca cgctgcccac
     1201 catcgccgac aacaccgagg aacccaccgc catgaatgaa cccgtgatga ccgccaccag
     1261 cgatgactga accgcagcgt gaggtgcacg ttctgctcgt cgaggacgac ccgggtgacg
     1321 tgctcatgac ccaggaagcc tttgagcatc acaggctcgg caatccgctg cacgtcgtct
     1381 ccgacggcgc cgccgcgttg cggtttctgc gccgcgaggg tgagcacact gacgcgccgc
     1441 gacccgggct gatcctgctc gacctcaacc tgccattgat gaacggccgc gaggtgctcg
     1501 ccgcgatcaa gtccgacgac cagctgcgca gcatccccgt cgtcgtgctc accacctccc
     1561 aggccgagga ggacatcgtg cgcagctacg acctgcacgc caacgcctac gtcgccaaac
     1621 ccgtcgactt ctcccggttc atggagatca tccgtcagat cgacgatttt ttcgtcaccg
     1681 tcgtccggct cccccccacg taaggcaagc aggccgacga actgaccaac tagcgatatc
     1741 gtgcctagtt cactctctgg gagcgagcag tcgcctggcg ctacttaatt gataactgat
     1801 caaaatagac cttgacagtg ttggatttgc ctgtttagta tcgttagtcg tcatcgagtt
     1861 ctacaattct cgatgcattg acgagagggc cgtccatcgt gggcctaggt gccttaatta
     1921 gcgcttttct cagctccgtg ggcactgata tctcaacttt tcttggaggc gtcgccactc
     1981 ttttttagca ctgccgcctg aaataccgat ggattcagga cagaccccgc gagtaccaaa
     2041 gaggcaacga ttgcaccgct ggacggcgcg gagccggaca gtcgggcagc tgtgcggcgc
     2101 gtcgagcacg gcggaccgct gcctacgcac atctcgggac cgatgatcct aagctttccg
     2161 gatggcccgg tacttcagtg tgcatccggt agacccgcaa cggcgtgcga tcggtcaggt
     2221 gatcgagctg gtccgcggcg gtggcctcat tgcctacccg acggattcct gcttcgctct
     2281 gggctgccag ctcggcaact ccggcggtct ggaccggatc cgcgagatcc gcgacctcga
     2341 cgacaaacac cacttcaccc tggtgtgccg ggacttcgcg cagctcgggc agttcgtcca
     2401 cgtcagcaac gcggcgttcc ggctgatcaa agcgtcgacc ccgggcagct acacgttcat
     2461 cctgcccgcg accaaggagg tcccgcgccg gctgctgcgc ccgaagaaga agaccgtcgg
     2521 ggtgcggatc ccgcagcatg ccgttgcgca agcgctgctg gccgagctgg atgagccgct
     2581 gctgtcctcc acgctgctgc tcccggatga gcccgaaccg ctgacccagg gctgggagat
     2641 caaagagcgg ctcgaccacg cggtcgacgc ggtcatcgac tcgggtgact gcggcaccga
     2701 gccgaccact gtgatcgact tctgcggatc cgagcccgag atcgtgcgcc gcggcgccgg
     2761 cgatccgtcc cggttcgagt agcacttcga aggctcgccg tgagtctggc ggttgcggcg
     2821 gaacgccttg tcggccagac ggcggtcctc gctaccctgt gtccccgcgt acctacagtg
     2881 ccggaggagt tcatgcgcac gttgccggtc atggccctag gagtcgtcct gctgacggct
     2941 tca
//
LOCUS       DASVXZ010000743         4067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1476468, whole genome shotgun sequence.
ACCESSION   DASVXZ010000743 DASVXZ010000000
VERSION     DASVXZ010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476468"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..1290
                     /locus_tag="VF788_15800"
     CDS             73..1290
                     /locus_tag="VF788_15800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005461587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX8935614.1"
                     /translation="MAKANRWLAALLAVASTVTILLGTAPAVAQPACFQQIAPPPPVD
                     SSEAPKPGSPAPPPISVPDAPVGGPRMGECGLVLPAGAPNPPTGISAMSWLIADADSG
                     EVLAAKDPHARHRPASTLKLFTALLSVDQLPADRVVTATQTDADQDGSRVGLGPGGHY
                     TVRQLLTGLLLASGNDAAHALADQLGGVSATVTQMNRLAANLGALDTRAATPSGLDGP
                     GMSASAYDLALAFRQVLSRPLLVELLGTRQADFPGFGNRPGFVLSNDNKLLRTYSGAL
                     GGKTGFTDDARHTQLDAAQRGGRRLMVVLMRGEQRPVSMSEQAARLLTYGFALPTGKP
                     VGRLVNGAQAPETTAAAPGAEPPQVGLPAATRGWNGRSQDTIPLLPVILWAGLAVAIL
                     AILGVLVARQRHR"
     gene            1298..1846
                     /locus_tag="VF788_15805"
     CDS             1298..1846
                     /locus_tag="VF788_15805"
                     /inference="COORDINATES: protein motif:HMM:NF025052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8935615.1"
                     /translation="MIVQLAGLPGSGKSALAAELVHRLGASALLLDKDHVRCALFGIV
                     HTLYTREQDDFCVAMMLRTAAWHLRRTPGSIIILDGRTCYRAYQVAHVRRFASRIREP
                     LRLIECICAEAIIEQRLRVDEVNGTHPAANRDIQLYRQLQAGADPIPDPKLRLDTAQP
                     VHECADRALSYLDHALPTDPTL"
     gene            complement(1875..3848)
                     /locus_tag="VF788_15810"
     CDS             complement(1875..3848)
                     /locus_tag="VF788_15810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8935616.1"
                     /translation="MRFRRTAGALPTHPGTPMLIGVEDLKTPAWAEAIETVGGSSAGR
                     MLRSAPIALGVLVRMAWRASPRLTLLAAVVELASGCATAFGLLATANVLTQLLQQGPT
                     PQRVVAALPALLLVMASYAARGMLEAAVGAVHAVLAPRVELHVQDELHAAVIGVELVA
                     FDDADFVELVRRAAGQGIASVGQGVTDAGNLLSSAISLAAAIVTAGLLNPVLAPVVLL
                     AAVPNGWASVRAARLAYESFVRMISRRRRLGITSGLITGRRESAEVRAFTTQEALLAE
                     HRRIGAQLAAESVKVEHRKTAIRLLGRGLAGIGTALAYGVLGVLLYLGAMPLALAGAA
                     AVAMRTASSAVSITVYTANRLFEQSFYLDMLGSCLAQARAHHRAEAALPLPSDPQTIE
                     LHEVSFSYPGKDEPALRQVSLTIHRGQVVALVGENGSGKSTLAKVITGLYLPDQGRVT
                     WDGVDIAKVDQRALHSQVTVVLQDPVEWPMTAENNVRIGRLERADPDGSALTASAADS
                     GADSVVDDLPEGWNSVLSREFQNGCDLSGGQWQRISVARGLYRDAPLLVADEPTAAMD
                     ARAEHAVFQSLQSLSRAGAVSGNGHRSGRDRTTVLITHRLANVRHADQIIVLDHGRIT
                     ERGTHEELMVHGGGYAELFTLQARAYLDGSVSA"
     gene            3870..>4067
                     /locus_tag="VF788_15815"
     CDS             3870..>4067
                     /locus_tag="VF788_15815"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEX8935617.1"
                     /translation="MPSALACRLVSNDGPHSSPNVRAGIAVTGTELLTGLISDRNGPW
                     LAQRLGDLGVEVAHLICVGDRS"
BASE COUNT          671 a         1450 c         1320 g          626 t
ORIGIN      
        1 cgctgcctcg tgagtggtat tcggcgctat agcgccgaat accactcacg aggcagcggt
       61 taacctgcgt ccgtggcgaa ggctaaccgc tggctcgcag cgctgcttgc cgttgcgtcg
      121 actgtgacga tcctgctcgg aacggcaccc gccgttgcgc agcccgcatg tttccaacag
      181 atcgccccgc caccgccggt cgactcctcc gaggcgccga agccgggcag cccagcgccg
      241 ccgccgatat cggttcctga cgctccagtc ggtgggccgc ggatgggtga atgcgggctg
      301 gttctgccag ccggcgcgcc caacccgccc accgggatca gcgcgatgtc ctggctgatc
      361 gccgacgcgg actccggcga ggtgctcgcc gccaaggacc cacacgcacg ccaccgcccg
      421 gcctcgacgt tgaagctgtt caccgctctg ctgagtgtcg atcagcttcc ggctgaccgg
      481 gtggtgaccg ccacccagac agacgccgac caggatggca gccgggtcgg tctgggcccg
      541 ggtggccact acacggtccg gcagctgctc accggtttgc tgctggcctc cggtaatgac
      601 gccgcgcacg cgctggccga ccagctgggc ggggtgagcg cgaccgtcac gcaaatgaac
      661 cggttagccg ccaatctcgg tgcgctggat acccgcgcgg ctactccctc cggattggac
      721 ggtccgggaa tgagcgcgtc ggcctacgac ctggcgttgg ccttccgcca agtgctcagc
      781 cgtccgctgc tagtcgagct gctgggcacc cggcaggccg atttccccgg tttcggtaac
      841 cggcccggat tcgtcctcag caacgacaac aagctgctca ggacctattc cggcgcgctg
      901 ggcggcaaga ccgggttcac cgacgatgcc cggcacaccc aacttgacgc cgcccagcgc
      961 ggtgggcggc gcctgatggt ggtgctgatg cggggcgagc aacggccggt gtccatgtcc
     1021 gaacaggcgg ccaggctgct gacctacggg ttcgccctgc ctaccggcaa gccggtaggc
     1081 aggctggtga acggagcgca ggcgcccgag acgaccgcgg cagctcccgg agccgagccg
     1141 ccccaggtgg gtctacccgc cgcaacccga ggctggaacg gcaggtctca ggacaccatc
     1201 ccgctgctgc cggtcatcct gtgggctggc ctggcagtgg ctatcttggc catactcggc
     1261 gtcctcgtag cgcgccagcg acaccggtga cagaacagtg attgttcagc tagcgggcct
     1321 gcccggcagt ggcaagagcg cgctggccgc cgagcttgtc caccgcctgg gagccagcgc
     1381 gttgttgttg gacaaagatc acgtcagatg cgccttgttc ggtattgtgc acacgctcta
     1441 cacccgggag caggacgact tctgcgtcgc catgatgttg cggacggccg cgtggcacct
     1501 acgccgcacg cccggatcca tcatcatcct ggacggtcgc acgtgctacc gcgcgtacca
     1561 ggtcgcccac gtgcggcggt tcgcgtcccg aatccgcgaa ccgctgcgac tgatcgagtg
     1621 catctgcgcg gaggcaatca tcgaacaacg gctacgcgtg gacgaggtga acggcacaca
     1681 ccccgccgcc aaccgcgata tccagttgta ccggcagcta caagccggcg ccgatccgat
     1741 cccggatccg aaactccgcc tggacaccgc ccagcctgta cacgagtgcg ccgaccgagc
     1801 gctgtcttac ctcgaccatg ctctgcccac tgacccgacg ttgtgagccg cgaacctcgc
     1861 gacgacgccg gacactaggc ggatacgctg ccatcgaggt aggcacgagc ttgcaacgtg
     1921 aacagctcgg cgtatccgcc gccgtggacc atcagctcct catgggtgcc ccgctcggtg
     1981 atgcggccgt ggtccagcac gatgatctgg tcggcatgcc gcacattagc caaccggtga
     2041 gtgatcagca ccgtcgttcg gtcacgtccg gagcggtgac cattgcctga tacggctcct
     2101 gcccggctga gcgactgcaa ggactggaac acggcatgct cggcgcgcgc gtccatcgcg
     2161 gcggtgggtt cgtcggcgac cagcagcggt gcgtcccggt acaaaccgcg agccacgctg
     2221 atccgctgcc actgcccacc ggagaggtcg catccattct ggaactctcg ggacagcacg
     2281 ctgttccagc cctcaggtag atcgtcgacc acggagtccg cgccggaatc ggccgcggac
     2341 gcggtcagcg cactgccatc gggatcagct cgttccagcc ggccgatgcg gacgttgttc
     2401 tccgcggtca tcggccactc aacggggtcc tgcagcacca cggtgacctg ggagtgcagc
     2461 gcacgctggt cgaccttggc gatgtcgact ccgtcccagg tcacccggcc ctgatcaggc
     2521 agatagagcc cggtgatcac cttggcgagg gtggacttgc ccgagccgtt ctctcccacc
     2581 agcgcgacca cctgcccacg gtggatcgtg aggctcacct gccgcagcgc gggctcatcc
     2641 ttgccggggt agctgaaaga cacctcgtgc aactcgatgg tctgcggatc ggatggcagc
     2701 ggcaacgcag cttcggcccg gtgatgggca cgggcctggg ccaggcagct acccagcatg
     2761 tcgaggtaaa agctttgctc gaacagccgg ttggcggtgt agaccgtgat agacaccgcc
     2821 gaactcgcgg tccgcatcgc gaccgccgcc gcgccggcca gagccagcgg catcgccccg
     2881 agatagagca gcaccccgag cacgccgtag gccagcgccg taccgatgcc ggcaagaccc
     2941 cgccccagca gccggatcgc ggtcttgcgg tgctcgacct tgaccgactc cgcggccagt
     3001 tgcgccccga tccgccgatg ctcggcgagc agcgcctcct gagtggtgaa ggctctgacc
     3061 tcggccgact cccgccgacc ggtaatcagg ccgctggtga ttcccagccg gcgccggcgc
     3121 gagatcatcc gcacgaagga ctcgtatgcc agcctcgcgg cccgcacgct ggcccacccg
     3181 ttgggcactg ccgccagcag caccaccgga gccaggacgg ggttgagcag gccagccgtc
     3241 acgattgcgg cggcaagcga gatcgccgag ctgagcaggt ttccggcatc ggtgactccc
     3301 tggccgacgc tggcgatccc ctgccccgcg gcgcggcgca ccaactccac gaaatccgcg
     3361 tcgtcgaagg cgaccagctc cacaccgatc accgcggcat gcagctcatc ctgcacgtgc
     3421 agctccactc gcggcgcaag cactgcgtgc actgcaccga ctgcggcttc cagcattccc
     3481 cgggcggcgt aggaagccat caccaggagc aacgccggga gcgcggccac cactcgctgc
     3541 ggggtcgggc cctgctggag caactgggtc agcacattcg cagtggccag aagcccgaat
     3601 gcggttgcgc accccgaggc cagctcgacc acggcggcca gcaatgtcaa ccgcggcgag
     3661 gcccgccacg ccatccgcac cagcacgccg agcgcgatcg gcgctgagcg cagcatccgg
     3721 cccgcactcg agccccctac cgtctcgatc gcctccgccc atgccggtgt tttgaggtcc
     3781 tcgacaccga tgagcatcgg tgtgcccgga tgggttggaa gcgcgccagc ggtgcggcgg
     3841 aatctcatcg tggcctccca cgacaaagca tgccttccgc gctagcgtgc cgtctcgtga
     3901 gtaatgacgg accgcacagc agtcccaacg tccgggcggg gattgcggtc accggaacgg
     3961 agctgctcac cggtctgatc agcgaccgca acggcccgtg gctcgcgcag cgcctcggcg
     4021 atttgggtgt cgaggtggcg cacctgatct gcgtcgggga tcggtcg
//
LOCUS       DASVXZ010000744         3292 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1250458, whole genome shotgun sequence.
ACCESSION   DASVXZ010000744 DASVXZ010000000
VERSION     DASVXZ010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1250458"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VF788_15820"
     CDS             complement(<1..193)
                     /locus_tag="VF788_15820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HEX8935618.1"
                     /translation="MAVTAYLGPQGTFAEQAARVLSPEGELRSAVSVHAAISALRAGE
                     VDAACVPVENSVEGSVPATL"
     gene            complement(231..1118)
                     /locus_tag="VF788_15825"
     CDS             complement(231..1118)
                     /locus_tag="VF788_15825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007030543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935619.1"
                     /translation="MDLHPPSPPGVPPLLARLVDDAALFPPSGASVVDIVKAHLAARR
                     APHAGVIGFLLCPISRLGALVTALRKARPSRPVALSLIADTGLGGLPKAISTALDNPK
                     LLDLRMIEVPAPSDVDSTWLVQLTEFVPDDVVRVVEPRRGRPEWLAGVRRVAEAGCWP
                     KLRCGGKSVESFPSVQEVADFLAIATVTGQPFKATAGLHHAVRNHDESTGLTHHGLLN
                     MLVGTAHAVSGTNAHEALTCTDAATLAAEARSLSERSARVVREVFACYGSVSLTDPVA
                     ELVRLGLLPSPLPRSTPRS"
     gene            complement(1166..1480)
                     /locus_tag="VF788_15830"
     CDS             complement(1166..1480)
                     /locus_tag="VF788_15830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3817 domain-containing protein"
                     /protein_id="HEX8935620.1"
                     /translation="MIGYRIAAYATGVMLLVLTTSVVLHYGFGDQRLAWSGPVHGFLY
                     MGYLVATLLLGTAVRWRPLRMLLIALAGTIPLMSFVAERSVTREVRSQLSAPADGKLG
                     AR"
     gene            complement(1503..1895)
                     /locus_tag="VF788_15835"
     CDS             complement(1503..1895)
                     /locus_tag="VF788_15835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935621.1"
                     /translation="MWRFVLGRRWWVGHVLVAICCAVFVRLGRWQWDRAQSPTGGWQN
                     LGYALQWPLFAVVLVAAWARFLWLEQHGVTPVRSRIEPDPAPDPTPPVPRRRIQPPDR
                     PSNGEGDTDDELATYNAYLARLAEQDRR"
     gene            2043..2801
                     /locus_tag="VF788_15840"
     CDS             2043..2801
                     /locus_tag="VF788_15840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEX8935622.1"
                     /translation="MVTDRGERRALVVEIVLVLTVTLGLSGLRSLLALLDALLVPGSL
                     ADQSVAINAPVRKTELLDLGYQLTGVIQLVAWGGLGSYLLWRSGISLRSIGIDRRSPG
                     QDLGLGVGLAALIGVPGLGLYLLAHAAGLNLTVLPSALGDTWWRVPVLTAAAVANALA
                     EELLVVGYLITRLRQLGTGEGVAVLASAVLRASYHLYQGFGGFVGNLVMGLVFGRVWQ
                     RTHRLWALVSAHALIDVVAFVGYALLRGRVSWLP"
     gene            complement(2820..>3292)
                     /locus_tag="VF788_15845"
     CDS             complement(2820..>3292)
                     /locus_tag="VF788_15845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5926 family protein"
                     /protein_id="HEX8935623.1"
                     /translation="LEITMYPDFAWWVPGESPTGDAATALRQANEAIMPTEPITGTGV
                     EVAYWTDAGEKAHLRWIRAEPEEQLLAALARLAANDELHLGEGSRFAGSFRAHGVLVP
                     VWDLDREQHAREWTAPAEAFAHRHTQALDSLATPLTEPERRALRALHSRQLTLR"
BASE COUNT          544 a         1125 c         1136 g          487 t
ORIGIN      
        1 cgagagtcgc cggcaccgaa ccctccaccg agttctccac cggcacgcac gccgcgtcca
       61 cctcacccgc gcgcagcgcg ctgatggccg catgcaccga gaccgcagaa cgcaactcac
      121 cctcaggtga cagcacgcga gcagcctgct cggcgaaggt tccctgaggt ccgagataag
      181 cggtgacggc catggcacga gcctacgagg tgcccgctgc gacctctgca ttaactccgg
      241 ggtgtggagc ggggcagggg gctgggcagc agtcccagcc ggaccagctc ggccaccgga
      301 tcggtcaacg acaccgaccc gtaacaagcg aacacctcgc gcaccacccg ggcgctgcgc
      361 tcggacaacg agcgggcctc cgcagccagc gtggccgcat cggtgcacgt tagtgcctca
      421 tgagcattgg taccggatac cgcgtgtgcg gtgccgacca gcatgttgag cagcccgtgg
      481 tgggtcagcc cggtgctctc atcgtggttg cgcaccgcgt ggtgcaatcc ggcggtcgcc
      541 ttgaatggct ggccggtcac ggtcgcgatg gcgaggaaat ccgccacttc ctgcacgctg
      601 gggaacgact ccacggactt accgccgcat cgcagctttg gccagcaacc ggcctcggct
      661 acccgacgca ctcccgccaa ccactccggg cggccacggc gcggttcgac cacccgcacc
      721 acgtcgtccg gaacgaactc ggtgagttgc accagccagg tcgagtccac gtcggagggc
      781 gccggcacct cgatcatccg cagatccaag agcttcgggt tatccagcgc agtggagatg
      841 gccttgggca ggccccccag cccggtatcg gcaatcagcg acaacgccac cggccgggag
      901 ggacgtgcct tgcgcaacgc ggtgaccagc gcgcccagcc gggagatcgg gcagagcagg
      961 aaaccgatca ccccggcgtg cggcgcgcgg cgcgcggcga ggtgggcctt gacgatatcg
     1021 accacgctcg ccccggacgg cgggaacagc gccgcgtcat cgaccagccg ggcaagcagg
     1081 ggtggaacac ccggaggact gggaggatgc agatccagca ccgtcgacac ccgaggcacc
     1141 ttagccgggg tccaccaggc gccggtcatc gcgcacccaa tttcccatcg gctggcgcgc
     1201 tcaactggct gcgcacctca cgggtaacgc tgcgctcggc cacgaatgac atcaacggaa
     1261 tcgtgccggc cagcgctatc agcagcatcc ggaggggtcg ccaccgcacc gccgtgccca
     1321 gcaggagcgt ggcgaccaga taacccatgt agaggaaacc gtgcacgggt ccgctccagg
     1381 ccaaccgctg gtccccgaag ccgtaatgca gcaccacgga ggtggtgagc acgagcagca
     1441 tcacaccggt ggcgtaggcc gcgatccggt acccgatcaa tcgggtcgcg acttgattgg
     1501 ccctaccgcc ggtcctgctc ggcgagccgg gcgaggtagg cgttgtacgt ggcgagctca
     1561 tcgtcggtat cgccctcccc gttcgacggc cggtctggtg gctggatgcg gcggcgagga
     1621 accggtgggg tcgggtccgg tgccggatca ggctcgatcc tgctgcggac cggggttacc
     1681 ccatgctgct ccagccacag gaaccgcgcc cacgccgcaa ccaggacgac cgcgaacaac
     1741 ggccattgca acgcatagcc gagattctgc cagccgcctg tgggagattg cgcccggtcc
     1801 cactgccagc gccccaaccg gacgaacacc gcacaacaga tggcgacgag cacatgccca
     1861 acccaccacc gccggccgag cacgaaccgc cacacaaccc cacgatacgc ggcgccgaga
     1921 ctccccagcg ctctcaggcc cccgaagccg agtccatggg ggcggatagc gtcgcggggg
     1981 tgagcgcacg ggttagcggg ttgcgggggt ggtttgcgcc cgtgcgaccg caggagcccg
     2041 gggtggtcac tgaccgcggc gaacgccgag cgctggtcgt cgagatcgtc ctggtgctga
     2101 ccgtgacgct ggggctctca gggctacgga gcctactggc attgctggat gcgttgctgg
     2161 ttccgggatc cctggccgat caatcggtgg cgatcaacgc accggtgcgc aagaccgaac
     2221 tgctcgacct cggctaccag ctcaccggag tgatccagct ggtggcttgg gggggtctgg
     2281 ggagctacct cctctggcga agcggcatct cgttgcgcag catcggtatc gaccgtcgct
     2341 cgcccggcca ggacctgggg ctcggcgtcg gtctcgcggc attgatcggg gttccggggc
     2401 tcggcttgta cctgctggcc cacgcggctg gtctcaacct caccgtgctg ccctcggcgt
     2461 tgggcgacac ctggtggcgc gttccggtcc tgaccgcggc ggcggtggcc aacgcgctgg
     2521 cggaggagct actcgtcgtc ggatacctga tcacccggct acgccagctg gggacaggtg
     2581 agggcgtcgc cgtgctggcc agcgcggtgc tacgcgccag ctatcacctc tatcaggggt
     2641 tcggtgggtt cgtcgggaat ctggtgatgg ggttggtgtt cggccgggtc tggcagcgga
     2701 cccaccggct gtgggcgctg gtcagcgcgc acgcgctgat cgacgtcgtc gccttcgtcg
     2761 ggtacgcgct gctacggggc cgggtgagct ggctaccgta aacccgcacc cgccacaggt
     2821 cagcgcaggg tgagttggcg gctgtgcagg gcacgcaggg cgcggcgttc gggttcggtg
     2881 aggggggtcg ccagcgagtc cagagcctgg gtgtggcggt gagcgaaggc ctcagcggga
     2941 gctgtccatt cgcgggcatg ctgctcgcgg tccagatccc acaccgggac cagcacccca
     3001 tgggcgcgaa acgagccggc gaagcgggaa ccctcaccga ggtgcaactc gtcattggcg
     3061 gccagccggg ccagcgcggc gagtagctgc tcttcgggtt ccgcgcggat ccagcgcaga
     3121 tgcgccttct ctccggcatc ggtccagtag gccacctcga ctcccgttcc ggtgatcggc
     3181 tcagtcggca tgatcgcctc gttagcctgc ctcaacgcgg ttgccgcgtc accggtgggg
     3241 gactcaccgg gcacccacca ggcgaagtcg ggatacatgg tgatctcgag aa
//
LOCUS       DASVXZ010000745         4653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_580144, whole genome shotgun sequence.
ACCESSION   DASVXZ010000745 DASVXZ010000000
VERSION     DASVXZ010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4653
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580144"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..4116
                     /locus_tag="VF788_15850"
     CDS             <1..4116
                     /locus_tag="VF788_15850"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8935624.1"
                     /translation="TVASHQAALREFADAKGWDALRTACLEDLLENDPAQPYRAGSPE
                     DVALLFFTSGSTGTPKVVVQQHRAIITQVLGSARHLSMGSTDVVLNWMPLDHVGSVAM
                     LHSVSLYAGCPQVHVPTHHVLGDPLRWLDLVNRYRVSFSWAPNFAFGLVTDWLDKLGK
                     GGYRWDLSCVRAIINGGEAISARSARRFLQMLEPAGLPATAMWPAWGMAETSSGVVYS
                     ERFSVETASDNDSFVELGRPIAGIRLRIVDENNRALPEGEIGHLHVQGAMVTVGYHEN
                     PEANAEVFTNDGWFNTGDLGFLRDGRLTLTGRAKDIIIINGANYASHEIESLVEELPF
                     IDRSYTAACAVRHEGSDTDQLAVFFHLLPGTDERAALRQVRSKILREMGVNPDHLVPV
                     GRADIPKTGLGKIQRSKLTEQHGSKLLGSFEPSADTKWTAELPAWFYRPVWSPSVVRH
                     LPSEDTGPVLVFLDRLGLGDALCGLMQGRGQSCVSVHQEAGATFHRVTNDAYVIDPGN
                     AHHYLLLVRAITDQRVRLDHILHLSDYAAHLQFSDTKTIRESCRAGTGWLVHLLTAMD
                     AAAWDSPVSLRVVAACTQRVAENDPVTFSRAPLRSLLKTAAQEIPWLRCHHLDLEIGD
                     SSGNAQRIVDEIDGDTADPDAAYRGGYRLVPRLVPVHGADGALRVPQFAIGGLYVLTG
                     GLGGIGVEIARHLLTHYGAKVLLLGRSRLHESDPADGLDTRANVALTELCTRSADVRY
                     AVADVTDEQRVRECIEQAEECWGTRVAGVVHLASCYTEQLLLGCSVDQLLAAMEPKIC
                     GAWNLHKVLNDRPETPLILFSSATGHFGAVMQGPYAAANAALDAFADHLHSEAAQLGV
                     TSGCRSIGWSVWRETGISRGMSLTGQAPLRGYQMMAPNQALMSLSVATADPHPFVLVG
                     LDPDGRTTRRYMAGPPRPTRTIVARINEPDTVDQIARVLAPIRLLDRYGTPTSCQVVA
                     GAHTPAGPTEPQSDIERRIASVWRHILGQRKIQRDDDFFELGGTSLQMAQMHQLICQE
                     LGRDLRWADVLRTRTISAIAGLLDGPGTEAADTLTWQGIKYSYRYLTHRAAPQPIPLV
                     LISGAFQGMYAMPRIEHLLKPLGNMIMADLPGSGSADDLSSDYGFDFLADCLNHLLDE
                     LGVPRINLVGVSYGGSIAYEFAHRWPNRINRLALVGTVTSFPAETPARRVVSTRILEQ
                     GRLDSFADYIVEATMCLNPDVVIRNRETTRTLVEKILRETTPWEAVRYIDVQNRILAP
                     ARKPEDRLFDRPTLVFTGEHDMLTPPSFVRDLAATISGALYTSFKDADHLVPMERPEE
                     MADLLIRFFTDQCLDNLPYCYPIETPRAPQCHHGRSGTCELPVASGRTAST"
     gene            complement(4047..>4653)
                     /locus_tag="VF788_15855"
     CDS             complement(4047..>4653)
                     /locus_tag="VF788_15855"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935625.1"
                     /translation="VTLSAEQARWAQQAIDAEGLTSLAEVRHLDYRDAPGRDYDAISS
                     IGLTEHVGVHTYPTYFAQLLAKLRPGGRLLNHCITVPDNRAKPQSDAFIDRYVFPDGE
                     LAGAGKIITEAQNAGFEVRHVENLREHYALTLKEWNANLVAHWDECVAEVGVPTARVW
                     GLYMASSRLAFERNGIELHQVLAVRPDATGNSHVPLRPWWH"
BASE COUNT          824 a         1508 c         1406 g          915 t
ORIGIN      
        1 accgtggctt ctcaccaggc cgcattgcgc gaattcgcgg acgccaaggg gtgggacgcc
       61 ctccgaaccg catgcctgga agatctcctt gagaacgatc ctgcgcagcc gtaccgggca
      121 ggttcccccg aggacgtcgc gttgctgttc ttcacctctg gtagcaccgg gacacccaaa
      181 gttgtggtgc agcaacatcg cgccatcatt acccaggtcc tcggatcggc gagacacctg
      241 tctatgggca gcacggatgt ggtcctcaac tggatgccgt tggaccacgt cggcagcgtg
      301 gccatgcttc actccgtgag tctttacgcg ggctgcccgc aggttcatgt ccccacgcat
      361 catgtgctgg gtgatccgtt gcgttggctg gatttggtga atcgttaccg agtcagtttc
      421 agctgggcgc cgaactttgc cttcggtctg gtaacggact ggctggataa gctcggtaag
      481 ggtgggtacc gatgggatct ctcctgtgtt cgagcgatca tcaacggcgg tgaggcgatt
      541 tccgcccgca gcgcccgtcg tttcttgcag atgctcgaac cagcgggttt accggccacc
      601 gcgatgtggc cggcgtgggg aatggcagag acgtcgtctg gcgtcgttta ctcagagcgc
      661 ttctctgtag agacggctag cgacaacgat tcctttgtgg agcttggtcg gccgatcgct
      721 ggtattcgcc tgcgcattgt tgatgaaaat aaccgcgccc tgcctgaggg agagattggg
      781 cacctccatg tccagggtgc catggtgacc gtgggatacc acgagaaccc cgaggcgaac
      841 gctgaggtct tcactaacga cggctggttc aacaccggag acctcggatt tctgcgggat
      901 gggcgtttga ccctcacggg tcgggccaaa gacatcatca tcatcaacgg tgcgaattat
      961 gccagccatg agatcgagtc gcttgtggag gagctgccct tcatcgaccg gtcctacacc
     1021 gcggcctgcg ccgtgcgtca tgagggctcg gacacagacc aactcgcggt cttcttccac
     1081 ctgctgcctg ggacggacga acgcgccgct ctgcgtcaag tacgttcgaa gattctccgg
     1141 gagatgggag tcaatccgga tcacctggtt ccggtcggcc gtgcggacat tcccaagact
     1201 ggccttggca agatccagcg cagtaaactc accgagcagc acggatccaa gctgctcggc
     1261 tctttcgagc cctctgcgga taccaagtgg actgccgaac tgcccgcctg gttctaccgc
     1321 cccgtatgga gtccgtcggt cgtccgtcac cttccaagcg aggacaccgg tccggtcctc
     1381 gtcttcctgg atcgcctcgg gcttggcgat gccctctgtg gcctcatgca ggggcgcggc
     1441 cagtcgtgtg tgtcagtgca tcaggaggca ggtgcgacct ttcatcgtgt caccaacgat
     1501 gcgtacgtca tcgatcctgg caatgcgcac cactacctcc tgctggtgcg tgcgatcacc
     1561 gatcaacgag tgcgcctcga tcacatcctg cacctgtccg actatgctgc tcaccttcag
     1621 ttctcggaca ccaagacgat ccgtgagagc tgccgagcgg gtacgggctg gttggttcat
     1681 ctcctgaccg ccatggatgc cgctgcttgg gactcacccg tttctttgcg tgtggtcgcc
     1741 gcttgcacgc aacgcgtcgc ggaaaatgac cctgtcactt tctcccgcgc tcctttgcga
     1801 agtttattga agacggccgc tcaagaaatt ccttggctac gttgtcacca tctggacttg
     1861 gagatcggcg acagcagcgg caatgcacag cgcatcgtcg atgagatcga cggcgatacc
     1921 gccgatcccg acgctgccta ccgcgggggc tacagactgg tgccccgcct ggtcccagtc
     1981 cacggtgccg atggggctct gcgcgtcccg cagttcgcca tcggcggtct ctacgttctg
     2041 accggtggtt tgggaggtat cggcgttgag atcgcccgcc atctgctcac ccactacggc
     2101 gcgaaggtct tgcttctggg ccgcagtcgc ctgcacgagt cggatccggc cgacggtctc
     2161 gacacccgcg ccaacgtggc gctgacggaa ttgtgcacgc ggagcgccga cgtccggtac
     2221 gcagtggcag acgtcactga tgagcaacgc gtgcgcgagt gcatcgagca ggccgaggag
     2281 tgctggggga cgagggtcgc gggtgttgtg cacctcgcaa gctgttacac cgagcaatta
     2341 ctgctgggat gctctgtcga tcaactactt gcggcgatgg agccgaagat ctgtggggca
     2401 tggaatctgc ataaggtcct caacgaccgc cccgaaactc ccttgatcct gttctcctcc
     2461 gccactgggc acttcggtgc cgtgatgcag ggcccgtacg cggcagccaa tgccgccctg
     2521 gacgctttcg ccgatcacct gcactccgag gctgcacagt taggcgtgac ctccggctgc
     2581 cggagcatcg ggtggagcgt gtggcgggaa acgggcatca gtcgggggat gtcgcttact
     2641 gggcaggccc cgctacgggg ctatcagatg atggccccga atcaagcact gatgtctctg
     2701 tcggtggcta ctgccgaccc tcatcccttc gtgctggtcg gtcttgatcc agatggccgg
     2761 acgacccggc gctacatggc cggcccacca cggccgaccc gcacgatcgt cgcacgcatc
     2821 aacgaaccgg acaccgtcga tcagatcgct cgcgtcctgg ccccgattcg cctgctggat
     2881 cgttacggca ccccgacgtc gtgccaggtg gtggcgggcg ctcatacgcc agcggggcca
     2941 acagagccgc agtcagacat cgagcgacgg atcgcctcgg tatggcgcca catcctcggc
     3001 cagcggaaga tccagcgcga cgacgatttc ttcgagttgg ggggaacatc tttacagatg
     3061 gcccagatgc accagctgat atgccaggaa ctgggccgag atcttcggtg ggctgatgtg
     3121 ttgcgcaccc gtaccatcag cgccatcgca gggctactcg atggccccgg cacggaagcc
     3181 gccgacacac tcacctggca gggcatcaag tacagctacc gttacctgac acaccgggcg
     3241 gccccccagc ccatcccgct cgtgctcatc agcggcgctt tccagggcat gtatgccatg
     3301 ccgcgaatcg agcacctgct caagcctctc gggaacatga tcatggcaga tctccctgga
     3361 tccggctccg cggacgacct gtccagtgac tacggtttcg actttctcgc cgactgcctc
     3421 aaccatcttc ttgacgaact cggcgttcca cgcatcaatc tggtcggagt gtcctacggc
     3481 ggctccatcg cctatgaatt cgcgcaccgc tggccaaatc gcatcaaccg cctggcactg
     3541 gtcggtactg tcacctcctt cccagccgag acacccgcac gccgcgtggt cagtacacgc
     3601 atcctggagc agggacgact cgacagcttt gccgattaca tcgttgaagc gaccatgtgc
     3661 ttgaacccgg atgtcgtcat ccgcaaccgc gagacgactc gcacattggt ggagaagatc
     3721 ctccgcgaaa caacaccctg ggaggcagtg cgatacatcg acgtccaaaa ccgcatactg
     3781 gcaccggccc gcaagccgga agatcgcctc ttcgatcggc ctacccttgt attcaccggc
     3841 gagcatgaca tgctgacgcc cccgtcattc gtgcgcgacc tggcggccac aatctcgggt
     3901 gccttgtaca ccagtttcaa ggacgccgat cacctggtgc ccatggaacg tccagaagag
     3961 atggctgatc ttctgatccg cttcttcacc gaccagtgcc tcgacaatct gccctactgc
     4021 tacccgatag agacgccgcg agcgcctcaa tgccaccacg ggcgcagcgg aacgtgtgag
     4081 ttgccggtgg catcgggtcg gactgcgagc acctgatgca gctcgatccc gttgcgctcg
     4141 aaggccagcc gcgaggacgc catgtacagg ccccacaccc gggcggtggg cacaccgacc
     4201 tcggccacgc actcgtccca gtgcgctacc aggttggcgt tccactcctt gagcgtcagc
     4261 gcgtagtgct cccgcaggtt ctccacgtgg cggacctcga agccggcgtt ctgcgcctcg
     4321 gtgatgatct tgccagcccc ggccagctcc ccgtctggga aaacgtagcg atcgatgaac
     4381 gcgtcgctct gcggcttggc tcggttatcc ggcaccgtga tgcagtggtt gagcagccgg
     4441 cctcccggcc gtagcttggc cagcagctgc gcgaaatacg tcggataggt gtgcaccccg
     4501 acgtgctcgg tgagcccgat cgaggaaatc gcgtcgtagt cgcggccggg cgcgtcccgg
     4561 tagtccaggt gccgcacttc ggccagcgag gtgagaccct ccgcgtcgat ggcctgctga
     4621 gcccaacgag cctgctccgc ggacagcgtg acg
//
LOCUS       DASVXZ010000746         5636 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_175207, whole genome shotgun sequence.
ACCESSION   DASVXZ010000746 DASVXZ010000000
VERSION     DASVXZ010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5636
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175207"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VF788_15860"
     CDS             <1..448
                     /locus_tag="VF788_15860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935626.1"
                     /translation="TVVPSGSSAPLHGQVVSIGMLASSGSSPSTGSINYPVTIGLTST
                     DEQLFTGQSASVSIMLAHASGILTVPSSAVHHAGAGNIVSVLRNGTPSNVLVTLGAAG
                     PTRTQVLAGLNAGEQVILADLSQPLPTGDIQNLRRVTGGGNGRPGG"
     gene            complement(1219..1560)
                     /locus_tag="VF788_15865"
     CDS             complement(1219..1560)
                     /locus_tag="VF788_15865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein RbpA"
                     /protein_id="HEX8935627.1"
                     /translation="MASGNAIRGTRVGAGPMGESERGETAPRHRVSYWCANGHESRPS
                     FAVEADLPEVWDCPRCGFPAGRNEQRPPDAPRNEPYKTHLAYVKERRSDADGEAILAE
                     ALARLKESREP"
     gene            complement(1607..1840)
                     /gene="secG"
                     /locus_tag="VF788_15870"
     CDS             complement(1607..1840)
                     /gene="secG"
                     /locus_tag="VF788_15870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEX8935628.1"
                     /translation="MKLFLQILLLVTSIALILLILLHRSRGGGLSSLFGGGVQSSLSG
                     SSVVEKNLDRLTLFVSSVWVISIVGVGLLIKIG"
     gene            complement(1926..2711)
                     /gene="tpiA"
                     /locus_tag="VF788_15875"
     CDS             complement(1926..2711)
                     /gene="tpiA"
                     /locus_tag="VF788_15875"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020637189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEX8935629.1"
                     /translation="MARQPLIAGNWKMNLNHLEAIALVQKLAFALPEKYFAKVEVAVL
                     PPFTALRSVQSLVEGDKLLIRYGAQDLSPKDSGAYTGDIAGPMLAKLDCRYVIVGHSE
                     RRQHHCEDDALVGSKVRAALRNGLVPILCVGEGLEIREAGGHLAHTTEQLRAALKGLS
                     ADQARTVVVAYEPIWAIGTGRVATPGDAQEVCGALRAALADKYGAEVAQDVRVLYGGS
                     VKSSNVADLVAEPDIDGALVGGASLDADEFAKLCALAAGGPLP"
     gene            complement(2715..3911)
                     /locus_tag="VF788_15880"
     CDS             complement(2715..3911)
                     /locus_tag="VF788_15880"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020497835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEX8935630.1"
                     /translation="MRTLDDLLGEGVSGRTVLGRADLNVPLDGARITDDGRIQASLPT
                     LRALTGAGARVVVTAHLGRPKGAPDPAYSLAPVAARLGELLDAPVAAATDVVGDSARA
                     AVAGLADGEIALLENVRFDPRETSKDAAERDALADDLAALVGPDGAFVSDGFGVLHRV
                     QASVVDVAGRLPGYAGTLVLTELTTLRRLTEAPGRPYAVVLGGSKVSDKLAVIEALLP
                     KVDALLVGGGMCFTFLAALGHPVGDSLLEQDMVEVCARLLKASGDTIRLPRDVVIADR
                     FAADANTRTVPVQDIEDGWMGLDIGPETVHDFAAALDGVATIFWNGPMGVFELSPFAA
                     GTRGVAETIAGSDAFSVVGGGDSAAAVRLLGLPEDGFSHISTGGGASLEFLEGKELPG
                     VTVLET"
     gene            complement(3908..4912)
                     /gene="gap"
                     /locus_tag="VF788_15885"
     CDS             complement(3908..4912)
                     /gene="gap"
                     /locus_tag="VF788_15885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEX8935631.1"
                     /translation="MTVRVGINGFGRIGRNFWRAVQAGGHDIEVVAFNDLGDVATMAH
                     LLKYDSVLGRLKEDVHVTDDGIAVGGKTIKALAERDPGALPWGALGVDVVLESTGFFT
                     TAKDARKHVDEGGAKKVIISAPAKGEDLTVVIGVNDSRLDGSQTVISNASCTTNCLGP
                     MAKVLHDALGIEQGLMTTIHAYTQDQNLQDAPHKDLRRARAAAINVVPTSTGAAKAIG
                     LVLPDLNGKLDGYALRVPIPNGSITDLSASVSRETSIEEVNEAFRAAADGPLKGIVRY
                     SVEPIVSSDIITDPASCIYDSPLTKVIGKQVKIVGWYDNEWGYSKRLADLTVMVGSQL
                     "
     gene            complement(5113..>5636)
                     /gene="whiA"
                     /locus_tag="VF788_15890"
     CDS             complement(5113..>5636)
                     /gene="whiA"
                     /locus_tag="VF788_15890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0043937 - regulation of sporulation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEX8935632.1"
                     /translation="PGPEAALALVGAARRLGISAKAREVRGADRVVIRDGDAIGALLT
                     RLGAHDSVLAWEERRVRREVRATANRLANFDDANLRRSARAAVASAARVSRALDLLGG
                     DIPGHLLTAGRLRLEHRQSSLEELGQLADPPLTKDAVAGRIRRLLAMADRKAEELGVP
                     DTESAVTPDMLDA"
BASE COUNT          988 a         1991 c         1726 g          931 t
ORIGIN      
        1 taccgttgtg ccgagcggaa gctctgcacc attgcacggc caagtcgtct cgatcggcat
       61 gctcgcctca tcagggtcca gcccatcgac cgggtcgatt aactaccccg tcacgattgg
      121 gctcaccagc accgacgagc aactcttcac cgggcagagc gcgtcggttt caatcatgct
      181 ggcccacgca tcgggcatcc tcacagtgcc cagctccgcc gtccatcacg cgggggccgg
      241 caacatcgtt tcggtattgc gtaacgggac tccgagcaac gtcctcgtga ccctcggtgc
      301 cgcggggccc actcgcaccc aggtgctcgc cgggctcaac gccggtgagc aggtcatcct
      361 cgccgacctg tcccagcccc tacccaccgg cgacatccag aaccttcgtc gtgtcacggg
      421 cgggggcaac gggcgtcccg gcggatgagc gccggccgtc ctttcgatgg gtatgcaact
      481 ccaccgcgca taaggcgtac ccaaactcgt cattttgcgt gaggacggaa catgcccggg
      541 caagtatgtc tgaacgtgta tgtgccgtgc gacgtgcgat gacgtcctgt gattacggag
      601 agtgaccaat atgggcagtc tagtcgatat tcgagctgtc gggccaccga gtcatctgaa
      661 ggtgaggagg gggggacgcg accctgtcac ggcaggtgtc gtcggtgacc aagccgcacc
      721 cgcggaccgg tccgacaacg tgccccgagt gctggtgctc cacaatcatc attaccggaa
      781 ggcccaccgc gacctgtcct gcatccgagt cgtcgctgcg tcggcgatcg tcgcggggct
      841 cctgttgggt accgccccca tggcgctggc ccaagtcgga cagctactcg cctctgtacc
      901 agcagcgttc accccggccc agccgatccg agcggatctc agccccgcta cggtcgattc
      961 accgagcgaa agcgcttcaa ccgagacaat cgtgcagcac cgattagaaa cccattccgc
     1021 cacatcaatg atcagctgga atggtacgag tcaggcactc aagtgctcct acggcctact
     1081 cttcgagggg accacccgta cgtgcgaggc cgcgtgatat gaacccgtga tgtgaaccat
     1141 tgtgtacccc gccacctgcc agtgaccccc caagatgtgc ggcttggcgg cggggcacgc
     1201 gggctcttca gacccagttc agggctcgcg agattctttc aacctagcta gtgcctccgc
     1261 gaggatggcc tcgccgtcgg cgtccgaacg acgctccttc acataagcca ggtgcgtctt
     1321 gtacggctca ttgcgcggcg cgtcgggtgg ccgctgctcg tttcgccccg ccggaaaacc
     1381 acaccgcggg caatcccata cctcaggtag atcggcctca accgcgaacg aaggtcgaga
     1441 ctcgtgcccg ttcgcgcacc aataggagac ccgatgccgg ggagccgtct ccccccgctc
     1501 ggattcgccc atgggacccg ctccgacccg cgtaccgcgg atggcgttgc cacttgccat
     1561 tgattgcctc acctcgcgga actgcccggg tgctgcccgg gactgctcag ccgattttga
     1621 tcagtagtcc gactcccacg atggagatca cccataccga gctgacgaac agcgtcagcc
     1681 gatccaggtt cttctccacg acactggacc cggacaaact cgattgcaca ccgccgccga
     1741 acaaactaga caacccgccc ccgcggcttc gatgcaacaa gatcagcagg atcagcgcga
     1801 tgctggtgac caggagcagg atctgcagga agagcttcat cacaccctcg tcagacgacg
     1861 actgattcgc aagattactc cgtgggggaa gcgcatgggg acccagacct cgaagtcccg
     1921 ctctgtcacg gtagcgggcc tcccgccgcc aaggcacaga gcttcgcgaa ctcgtcggca
     1981 tccaggctcg caccgcccac caacgcgccg tcgatgtcgg gttcggccac cagatcagcg
     2041 acattgctcg atttcaccga tccgccgtag agcacccgga cgtcctgggc gacctcggcc
     2101 ccgtacttgt ccgccagcgc ggctcgcagc gcgccacaga cctcctgcgc atcgcccggc
     2161 gtagcgaccc gtccagtgcc gatcgcccag atcggctcgt acgcgaccac gaccgtccgg
     2221 gcttgatcgg cgctcaggcc cttgagcgcg gcacgcaact gctcggtggt gtgtgccagg
     2281 tgcccgccgg cctcacggat ctccagaccc tcccccacgc acaagatcgg aaccaacccg
     2341 ttgcgcagcg cggcccgcac cttgctgccc accagcgcgt catcctcgca atggtgttga
     2401 cgccgctcgg agtgcccgac aatgacgtag cggcaatcga gcttggccag catcggtccg
     2461 gcgatgtcgc cggtgtaggc gccggagtct ttcggggaca agtcctgcgc gccgtagcgg
     2521 atcagcagct tgtctccctc gaccagggac tgcacgctgc gcaatgcagt gaacggcggc
     2581 agcaccgcca cctccacctt ggcgaaatat ttctctggta gcgcgaaggc gagcttctgc
     2641 accagggcaa tggcctcaag gtggttcaga ttcatcttcc agttgccggc gatcaacggt
     2701 tggcgagcca tccgctaagt ctccaacacc gtgacgccgg gcagttcctt gccctccaga
     2761 aactccagag acgcgccacc gccggtggag atatgcgaga agccgtcctc aggaaggccg
     2821 agcagtcgca ccgcagctgc cgagtcgcca ccaccgacga cgctgaacgc gtccgatccc
     2881 gcgatggtct cggccactcc gcgagtgccg gccgcgaacg gggacagttc gaacaccccc
     2941 atcggtccgt tccagaagat cgtggccacc ccgtccagcg ctgcggcgaa gtcatgcacc
     3001 gtctccgggc cgatgtccag acccatccat ccgtcttcga tgtcctgcac cggcaccgtg
     3061 cgggtgttcg cgtccgcagc gaacctgtcg gcgatcacca cgtcccgagg cagcctgatg
     3121 gtgtctccgg aggccttcaa cagccgggcg cacacctcaa ccatgtcctg ctccagcagt
     3181 gaatcaccga ccggatggcc aagagccgcg aggaaggtga agcacatccc acctccgaca
     3241 agcaacgcgt ccaccttcgg cagcaacgcc tcgatcacgg cgagcttgtc ggagaccttc
     3301 gagccaccca gcaccaccgc atagggacgg cccggtgcct cggtgagccg ccgaagggtg
     3361 gtcagctcgg tgagcaccag ggtgccggcg tagccgggca accgcccggc cacgtccaca
     3421 actgacgctt gcacgcggtg caagacaccg aacccatcgg agacgaacgc gccgtccgga
     3481 cccaccagcg cggcaaggtc atcggccagc gcatcccgct cagcggcgtc cttggacgtc
     3541 tccctggggt cgaagcgtac gttttccagg agcgcgattt ccccgtcggc caggccggcg
     3601 accgctgcac gagccgagtc accaacgaca tcggtggccg ccgccaccgg agcatccagc
     3661 agttcaccaa gccgtgcggc gaccggagcc agcgagtacg ccggatccgg tgcgcctttg
     3721 ggccggccga ggtgcgcggt caccactacc cgagcaccgg cgccggtcaa cgcccgcagg
     3781 gtgggcagcg aggcttggat ccggccatca tcggtgatcc tggctccgtc caaggggaca
     3841 ttgaggtcag cccgacccaa cacggtccgg cccgacacgc cctcaccgag cagatcgtcg
     3901 agcgtcctca cagctgcgag ccgaccatca cagtcagatc agccagccgt ttcgagtagc
     3961 cccattcgtt gtcgtaccag ccaacgatct tcacctgctt gccgatcacc ttggtcaacg
     4021 gtgagtcgta gatgcacgac gccgggtcgg tgatgatgtc cgaggagacg atcggttcca
     4081 cgctgtagcg cacgatgccc ttcagcggac cgtcggcagc ggcccggaag gcctcgttga
     4141 cctcctcgat gctggtctcg cgggagaccg aggcggacag atcggtgatc gatccattgg
     4201 ggatcggcac ccgcagcgcg tagccgtcca gctttccgtt gaggtccggt agcaccagcc
     4261 cgatagcctt ggcggccccg gtggaggtcg gcacgacgtt gatcgcggcg gcgcgggcgc
     4321 ggcgcaggtc cttatgcggc gcgtcctgca ggttctggtc ctgggtgtag gcgtggatgg
     4381 tcgtcatcaa gccctgctcg atgcccagtg catcgtggag caccttggcc atcgggccca
     4441 ggcagttggt ggtgcaggac gcgttggaga tgaccgtctg ggaaccgtcc agccgggaat
     4501 cgttgacgcc gatcaccacg gtgagatcct cacccttggc cggcgccgaa atgatcacct
     4561 tcttggcgcc accctcgtcg acgtgcttgc gggcgtcctt ggctgtggtg aaaaagccag
     4621 tcgactccag caccacatca acacccaggg caccccaagg cagggctccg gggtcccgct
     4681 cggcgagcgc tttgatggtc ttgccgccga ccgcaatgcc gtcgtcggtg acatgcacgt
     4741 cttccttcaa ccggcccagc acgctgtcgt acttgagcag gtgcgccatg gtggcgacgt
     4801 ctccgaggtc gttgaaggcg accacctcga tgtcatggcc gccggcctgc acagcacgcc
     4861 agaaattccg acctatgcgc ccgaacccgt tgatccctac ccgaacggtc acgatgccct
     4921 ctccctcttc cctttcgaca cccacaccgg ccgcgacagc cggcacaact gagcttgacc
     4981 ctatgcgggg ccaccctatc ggccagtgcc caccgcgcag gacccccggg agggggagcc
     5041 gcaggggtgt tcacacttcc tgtggcccgg ctctctgcgg ctttggccgg cgcagtgagg
     5101 taatcggcgg cgtcacgcat ccagcatgtc gggggtgacc gccgattcgg tgtccggcac
     5161 tccgagctct tcagccttcc ggtcggccat ggcgagcagc cggcggatcc ggcccgctac
     5221 agcgtccttg gtcagaggcg ggtcggcaag ctggccaagt tcttccagcg aggactgccg
     5281 atgctccagc cgcagccggc ccgcggtgag gaggtgaccc gggatgtcgc caccgagcag
     5341 gtccagggcc cggctcaccc gggcggccga tgcgactgcc gcgcgcgcgg atcggcgcag
     5401 gttggcgtca tcgaagttgg ccagtcggtt ggcggttgcc cgcacttcgc ggcgcacccg
     5461 gcgttcctcc caggccagta ccgagtcgtg ggcgccgagg cgggtgagca gcgccccgat
     5521 agcgtctccg tcgcggatga ccacccgatc ggcgcctcgg acctcacgtg ccttggccga
     5581 gatgcccaac cggcgggccg ctcccaccag cgccagcgct gcttccggcc ccggac
//
LOCUS       DASVXZ010000747         3448 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1386196, whole genome shotgun sequence.
ACCESSION   DASVXZ010000747 DASVXZ010000000
VERSION     DASVXZ010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1386196"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            352..492
                     /locus_tag="VF788_15895"
                     /pseudo
     CDS             352..492
                     /locus_tag="VF788_15895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013222122.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
     gene            1360..1687
                     /locus_tag="VF788_15900"
                     /pseudo
     CDS             1360..1687
                     /locus_tag="VF788_15900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011689697.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            3057..3209
                     /locus_tag="VF788_15905"
     CDS             3057..3209
                     /locus_tag="VF788_15905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935633.1"
                     /translation="MGVPHVGHAEGTDGFTRSTLLLARSLVLAAVLVVGSGARVTLAP
                     SLRDAD"
BASE COUNT          719 a         1104 c         1016 g          609 t
ORIGIN      
        1 caggaaatca cgcagacaac aacatctaca ccgcaggcgc cggcggcccc gactcaagtg
       61 actgtgcccg ccgacctgat cggaaaggat gctcagccag tcaacgtaca gcttcacatg
      121 cttgggttca cgcatatcaa ctatacgtca ccggacggaa acagcttgaa tccccaaatc
      181 tacaacgatt ggaccgtcac tcaggtgagc cctgcccctg gcacggtcgt agcgactacc
      241 gacacagtaa cagttactgc ggcgaagaag cgagaacggg tggcaccagc accggcggca
      301 cgggcgccgg tagcaccagc gccggcggcc ccagcgccac catccctact tgacaattct
      361 cctccggcat cggcctacta tgccaattgt gcggccgctc gcgcagccgg agctgcaccg
      421 ctgtacaggg gacaacctgg ataccgctcc gctcttgacc gtgacggtga cggcatcgcc
      481 tgtgaacgct gaactacatc gcagcttatc actgcgcggc gtcatagcgt aaccaggaaa
      541 tcacacaaag catctgatgc aggctaacaa ctgtggagcc gtgacgatat acttactaca
      601 cagccggcga atgaaggcga caggtaatca tgaccaattc actgctacct gggccacact
      661 cgcagtgtgt ggtcacttat taccctcggc ggaccaacca catcctgcac ctgctgctga
      721 ccatcttcac gttcggattc tgggcagtca tttggattat cctggccatc gccaactcca
      781 gtgcgggacc gcgccaagtc gtggcccatg tcgatgcccg gccgctggca ggctgttgcc
      841 caccgcgcca ttaccgccca ttgacgcgcg tccagacaga caccgaccta ccgatgacca
      901 gctggccaag acgcaacgat caccaacatc gggttagcga tcgtctgggt gctggccatc
      961 ttgacaacgg ccatcgtgca aaacggtgtc cccatcatcg tggcgggctc tgttgcgccc
     1021 tgaaccgcgg gaatgcacgg cgtacgcgcg gagtccgctg agcgcgacgt tgcgcgctag
     1081 cgccaccgcc ctgacgccgg ccagcgggtc atcaagcgtc ggccggatca ttccggccat
     1141 tgcctcgatc ggacactcga cgatctccgc accatggacg ggactgtgca gcgaacggtg
     1201 ttttcggccc gacacgccgg gctggggtcc gacggaatgg gcactgtgag tgatgacatc
     1261 ggacgctatg agtccacaga agagcgagac caggataggg cgtcagctgt cgccggagca
     1321 ggccgctgcg gcggccatgg tcgctgaggc tcggcagcgg gggttgcgct gaccggtccg
     1381 aatgggctat tgaaactgtt cactaagaat gtgttggaaa cagcgctggg tgaggagatg
     1441 accgaccatc tcggccatga gaagaatcgc atcgaggtcg gccgcgagtc ggggaacgtg
     1501 cgcaacggga cccgtgtcaa gacggtgatc tcggacgcgg tgggcgaggt cgtgatcgag
     1561 gtccctcgag accgggaagg tagtgtcgag ccgcagatcg tgcagaaaag acaacgtcgc
     1621 ctttgtggat gaggtcgtgt tgtcgttgta tgcgaagggt ttgaccaccg gggagatctc
     1681 ggcgcatggt cagcaaggcc gcggacaggt cgaggtgttc ccaggccaga caaaggtgcc
     1741 ccagtccacg tcctgctccc atgccgcact gacgatccgg gctgcctcat cggccgtagg
     1801 aggatcgggc ttgggatgct gctgccgcgg acgcttaacc gtctccaacg gattgaccgc
     1861 gatccacccg caccgcagcg ccgcactgag cgcaccgctt gacattcccg aaccgacgac
     1921 accgacagcg gccggcactg atgcggcgca caccgcttgt cgcatacatg gtcccgttgc
     1981 gtacggtgct caaggaacgt tcgtcccttg caccgccgcc ggcacacccg cagctcggcg
     2041 tataactgct cgaacggtcg cgcaccgagc tgagcaagcc gactcagcga agtatcacca
     2101 accgcaggct tgagaaaatt ctcgatcgcc acccggtagc tggtccgagt ggtctcctcg
     2161 acctgatgcc cggctagcca ttcatcgagc agatagccca acgtcacgct ggtacgcgcc
     2221 gacgtcgcct cggcgacctg ccggcggaac ataccccgca gcttaatcgc cgcgtcctcg
     2281 tcctcagctg aaccggtcag catcacctgc ttcccggtca ccggatcctg cccaccgaag
     2341 agccggattt ggtaccgacc cccgcgctgc cggatgccgg tcaggtcctt cggagcctgc
     2401 ttcctgcgtg ccatgcgggg cagtctaagc agctgaattg gacagccaat tggacaaaga
     2461 tcaactacag gccatcgaaa aaactgttta cgctggtgac aggaggtggc caggggcggg
     2521 gtcgaaccgc cgaccttccg attttcagga ctatggtaat gcgttcatac tcaatcgcca
     2581 ccgtccatga cctgcgtcaa aaaagccaca cggtgatagg cgaacgtcga cgaacgaaga
     2641 cgaatgagac ggaaaaagag acgacacgag caccgcaacc ggccaagccc acacccgcag
     2701 accgctgcct ctgtggccag tccatcccag gggcggggac accgcaggct cgacgccgag
     2761 tcttccgcta tgaccatggg catgagccga aaccggaagc acaccgtgac cggtaagtcc
     2821 acctcccccg ccgttatgca cgccgcatgt cttcctcaac ggcgatcagc agtatcgacc
     2881 acgggacact cgatcagctg gtgacccacc actttcatgc cctgacccgg ggaatccgaa
     2941 gcggaggcct gcccgcagca cccattcttg gtcgagagct tgggaactac atgacatgtg
     3001 caggacacag cggttgagca gcagtttcgg ccgactgtga ttagccgtga aataccgtgg
     3061 gtgtccctca cgtagggcac gcagagggca cggacggctt cacccgctcg accctgctcc
     3121 tggcccgttc ccttgtcctg gccgctgtgc tcgtcgtggg gtcgggggca agggtgacgc
     3181 tggcgccatc gcttcgcgac gccgattagg cgcacttgcg ccggcgccac gacgtggata
     3241 ctgagcggct aagggaacgt ggctgccagt catttgattt gtagccggag ctagcctgta
     3301 agccggacct gcatacgcag agttgatacc tgggctgatg accctcacat cacgcttgac
     3361 ctgctttttt agcgttcaca acgttacgcg ccattccatc agtttacgga ctcttgcgga
     3421 cagtttgcgg acatccatag atcaactc
//
LOCUS       DASVXZ010000748         2615 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1117835, whole genome shotgun sequence.
ACCESSION   DASVXZ010000748 DASVXZ010000000
VERSION     DASVXZ010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1117835"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..356)
                     /locus_tag="VF788_15910"
     CDS             complement(6..356)
                     /locus_tag="VF788_15910"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEX8935634.1"
                     /translation="MKQLAYFATMLCVLVVLAFATAAVAQQQQGQETTQGDVVRVAIR
                     DNYFDPEHITVAPGTTVEWVNEGQNPHNVTADNGLFASGLLYPGESYWVTFDGSGTVT
                     YHCSPEMTGSITVA"
     gene            784..1167
                     /locus_tag="VF788_15915"
     CDS             784..1167
                     /locus_tag="VF788_15915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935635.1"
                     /translation="MTITTPLNDPNSSLVGGWTALWNGDLSQAATICAEQVTVHFGGR
                     AIAEAGDHVMDASGLADLIGAFRSTRPGLTYRVVEAHTTEQWGYCVWDAGRGDLNVGG
                     IDTFRFIRGRISHVYSVTAERPMGR"
     gene            1478..2263
                     /locus_tag="VF788_15920"
     CDS             1478..2263
                     /locus_tag="VF788_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HEX8935636.1"
                     /translation="MSDLSTPDIVDRVAWQRKIDELRLREKAHTREADAIAAARRRLP
                     MVEVDASTPVVGAHGEVPLIDVFEGRSQLFASYMMWYDGASAAHQCEGCTMNIGHVLE
                     LGYLHSRDVTFAVLCQGPFDESNRYREFMEWEMPWYSVPSTSVDALIAGRHFGMRVCY
                     LRDDDRVFETYWTTGRGCELMGSSYTMLDMTVYGRQEAWEDSPEGWPQRFFNTTSAQM
                     RTDDDGRAVNRPDGRPISQWSRLAAGRSDDLGTAGVTPADHCH"
     gene            2300..2533
                     /locus_tag="VF788_15925"
     CDS             2300..2533
                     /locus_tag="VF788_15925"
                     /inference="COORDINATES: protein motif:HMM:NF019884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HEX8935637.1"
                     /translation="MAAFVKVPRGLSVSLRCTSTSALAERCGVSSRTIERDLRSLQDA
                     GVPLYATAGRRGGYAPRAPRGARSLQQALFPYA"
BASE COUNT          460 a          863 c          827 g          465 t
ORIGIN      
        1 tactcctaag ctacagtgat actgccggtc atctccggtg agcagtggta ggtgaccgtc
       61 cccgacccgt caaaggtgac ccagtaggac tctcccgggt acaagagccc ggaggcgaac
      121 aacccgttgt cggccgtgac gttgtgtggg ttctggccct cgttgaccca ctccacggtc
      181 gtaccagggg caacggtgat gtgttccggg tcgaagtagt tgtccctgat ggccaccctt
      241 accacgtccc cctgagtggt ctcctgcccc tgctgttgct gcgccacggc ggcggtggcg
      301 aacgcgagaa cgaccaaaac gcaaagcatg gtcgcaaagt aggctagttg cttcatgggc
      361 ttccctccct tgcccttttt gtgttgctgt gggtactcta tcagcggcgg cctcgcttgc
      421 gtagggaaga aagagacggg gccgggtcct ggacattacc ccacgctatt gcctgccgct
      481 gcatatctat ccactcacgc tacatggtgt gttgctcacc gtgcccagcg ggacgcgaaa
      541 cggcgcacag ccccggtcct aacgaatagg gattcgcagg gctgcatacg cgtttccgag
      601 aatgaaggct ctcggcaatc tagtgaatag agattacccg ccccatagct gtactgaccg
      661 gggacattga ttgaggtccg cgagttccgt tcggcaccca ggctgcaagg ggtgggccaa
      721 accgcgaggt cttcggaaaa ctccgacact ccgttgtcgc aaccgctcgc gaggctggtt
      781 ggcatgacga ttacaacgcc tctaaatgac ccgaactcct ccttggtcgg gggatggacc
      841 gcactgtgga atggtgacct gagccaggcg gccaccatct gcgccgagca ggtcaccgtt
      901 cacttcggcg gtcgcgctat cgccgaggcc ggcgaccacg tgatggatgc cagcggcctt
      961 gccgacctca tcggcgcctt ccgatcgacg cgacctgggc tcacgtatcg ggtagtcgaa
     1021 gcccacacca ccgagcagtg gggctactgc gtctgggacg ccggcagggg cgacctcaac
     1081 gtcggaggga tcgacacttt ccggttcatc cgtggacgca tcagccacgt ctactcggtg
     1141 actgcggaac gacccatggg caggtgatgg ctcgagacgc acgggcaaga tgacgacgtg
     1201 cgccgtctcg aacgcctcca cgcgatcacc aatcatctgc aggctcgctc accccgagcc
     1261 gtctcggcgt cagctgctgt agagatgctc tcgagatgca gcgaagcttg ggaatcgtta
     1321 cggattcaaa gacaacggct ctcgggtgac gcgtgaagcg ttactgcacg tcggaggggc
     1381 ccaacacaat gagacctaca cgagtgttct gaatccagtt gacaccgacg gcgtgccgcg
     1441 gtagtctggc cggacaccct caccaggaga accgagcatg tccgacctgt ctacccccga
     1501 catcgtcgac cgcgtcgcct ggcagcggaa gatcgacgag ctccgcctcc gcgagaaggc
     1561 ccacacccgc gaggccgacg cgatcgccgc cgcccggcgc cggctgccga tggtcgaggt
     1621 cgacgcctcg accccggttg tcggcgcaca cggggaggtg ccgctgatcg acgtcttcga
     1681 gggcaggagt cagctcttcg cgtcgtacat gatgtggtac gacggcgcga gcgccgccca
     1741 ccagtgcgag ggctgcacca tgaacatcgg ccacgtgctg gagctgggct acctgcactc
     1801 gcgagacgtg accttcgcgg tgctgtgcca ggggccgttc gacgagagta accggtaccg
     1861 ggagttcatg gagtgggaga tgccctggta ctcggtgcct tcaacctcgg tcgatgcgct
     1921 catcgccggc cggcatttcg ggatgcgggt ctgctacctg cgcgacgatg accgagtctt
     1981 cgagacatac tggaccaccg gccgcggctg cgagctgatg ggcagttcct acacgatgct
     2041 cgacatgacc gtctacggtc gccaggaggc ctgggaggac tcccccgagg gctggccgca
     2101 acggttcttc aacaccacgt ccgctcagat gcgcaccgac gacgacggcc gcgccgtcaa
     2161 tcggcccgac gggcggccca tctcgcagtg gtcgcggctg gccgcaggtc gctccgacga
     2221 cctcggcacc gccggtgtca ccccggcgga ccactgccat tgagctcctc cgagccgcac
     2281 tttgacgagc gcgccgacga tggctgcttt cgtcaaagtt ccccgcgggc tgtcagtcag
     2341 tctacgctgc acctcgacat cagccctggc tgagcggtgc ggggtgagca gccgcaccat
     2401 cgagcgtgat ctccgctcgt tgcaagatgc aggcgtgcct ctctatgcga cggcgggtcg
     2461 acgaggcggc tacgccccta gggcgccgcg cggagcgcgc tcgctgcagc aggccctctt
     2521 cccctacgcc taggccctcc agctctgacg ccggcggcca tccggggttc ccacccggaa
     2581 gtcggagagc cgtacggccg cctagctcgc tcgcg
//
LOCUS       DASVXZ010000749         2307 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_712072, whole genome shotgun sequence.
ACCESSION   DASVXZ010000749 DASVXZ010000000
VERSION     DASVXZ010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2307
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712072"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VF788_15930"
     CDS             <1..409
                     /locus_tag="VF788_15930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003873299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX8935638.1"
                     /translation="TSTATTVTEVSAVSMDRSALREWITKRPEIAEQLLRVIARRLRR
                     TNNMLADLIFTDVPGRVAKALLQLAHDFGTQEGGMLRVTHDLTQEEIAQLVGASRETV
                     NKALADFAQRGWLRLEGKSVLILEPQRLVRRAR"
     gene            complement(430..885)
                     /locus_tag="VF788_15935"
     CDS             complement(430..885)
                     /locus_tag="VF788_15935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX8935639.1"
                     /translation="MSWSARLTELGLVLPPVPAPAGAYVAAVRSGSLVFTAGQLPLVD
                     GALAATGKLGDEIGAEPGRQLARTCALNALAAVDDLVGLDAVVRVVKVVGFVASAPGF
                     TAQPAVLNGASELFGEVFGEAGAHARSAVGVAELPLGAPVEVELVVEVS"
     gene            complement(882..1037)
                     /locus_tag="VF788_15940"
     CDS             complement(882..1037)
                     /locus_tag="VF788_15940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016696652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HEX8935640.1"
                     /translation="MTKWEYATVPLLTHATKQILDQWGADGWELVTVMPGPTGEQLVA
                     YLKRPKP"
     gene            1140..2126
                     /locus_tag="VF788_15945"
     CDS             1140..2126
                     /locus_tag="VF788_15945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsA-related P-loop ATPase"
                     /protein_id="HEX8935641.1"
                     /translation="MWPVHARLHVVTGKGGTGKTTVAAALAVALATGGGRTLLVEVEG
                     RQGIAHLFDTPPLPYQERRIAVAPGGGEVRALAVDAEEALLEYFTLFYSLGFAGRTLR
                     RMGAIEFATTLAPGLRDVLLTGKVKEATTRADKGVHTYNAVVLDAPPTGRVVKFLDVT
                     RAMADLAKVGPIHSQSKGVVRLLHSADTAVHLVTLLEDLPVAETLDTVVELDLADLRP
                     GAVLINRARPSRLPTRSVHAAANGRVDADRIRAGLIAAGLELDPAVLDGLVAETVEHA
                     VRADAEQQARIRLADAGLPLIELPELTEAGGDGVDLGGIYELAEALREQGVR"
BASE COUNT          390 a          777 c          793 g          347 t
ORIGIN      
        1 gacgtcgact gccaccacgg tgaccgaggt cagtgccgtg agtatggatc ggtccgcgtt
       61 gcgagagtgg atcaccaaac gcccggagat cgccgagcag ctgttacggg taatcgcgcg
      121 gcgcctacgg cggaccaata acatgctcgc cgatctgatc tttaccgatg tgccgggacg
      181 ggtggccaag gcgttgctgc agcttgcaca tgacttcggt acccaggagg gcggcatgct
      241 ccgggtcacc catgacctca ctcaggagga gatcgcccag ctggtcggcg cctcgcggga
      301 aacggtgaat aaggcgctgg ccgatttcgc ccaacgcggc tggctccgcc tggagggcaa
      361 gagcgtgctg atcctggaac ctcagcgcct ggttcgccgc gcccgctagc agcgcacgag
      421 ccggcccact caggacactt cgaccaccag ctcgacttcg actggagcgc ccagcggtaa
      481 ctcggcgacc ccgacggcgg accgggcatg cgcccccgcc tcgccgaaga cctcgccaaa
      541 cagctcggat gccccgttga gcacggccgg ctgcgcggtg aaaccggggg ccgaggccac
      601 gaaccccacc accttcacca cccggaccac cgcgtcgagc ccgaccaggt cgtccactgc
      661 ggccagcgca ttgagcgcgc aggttcgggc cagctgcctg cccggttcag cgccgatttc
      721 gtccccgagc ttgccggtgg ccgccagcgc tccatcgacc agtgggagct gaccagcggt
      781 gaacacgagg gacccgctgc gcaccgcagc cacgtatgcc cccgccggcg cgggcaccgg
      841 cggcaatacc aaaccaagct cggtcagccg ggccgaccag ctcacggctt ggggcgcttg
      901 agataggcca ccagctgctc tccggtcggc ccgggcatga cggtgaccag ctcccagccg
      961 tcggctcccc actgatcgag aatctgcttg gtggcatgtg tcagcagcgg cacggtcgcg
     1021 tactcccact tggtcatagc cgagcacgct agcgaatgcc gctgcgcgac ccgtgagtgg
     1081 cattccgagt gggaacaccg ttatgcactc acgggctgtg agccgcttag gctcacggca
     1141 tgtggccagt gcacgcccgc ttgcatgtcg tcaccggcaa gggcgggacc ggcaagacga
     1201 cagtcgctgc cgcgctggct gtggcgctgg ccaccggcgg cgggcgaacg ctgttggtcg
     1261 aggtcgaggg acggcagggc attgcgcacc tgttcgatac gcctccgctg ccgtaccagg
     1321 agcggcgtat tgcggttgcc cctggtggtg gagaggtccg ggcactggcg gtggacgccg
     1381 aggaggcgct cctggagtac ttcaccctgt tctacagctt gggcttcgca ggtcggaccc
     1441 tgcgccggat gggggcgatc gagtttgcca ccacactcgc gcccggcctg cgagatgtcc
     1501 tgctcactgg caaagtgaag gaggcgacaa cccgagcgga caagggcgtc catacctaca
     1561 acgcggtggt gctggacgcc ccacccaccg ggcgggtggt gaaatttctc gacgtcacca
     1621 gggcgatggc cgacctcgcc aaggttggac cgatccacag tcagagcaag ggagtggtcc
     1681 ggctgctgca ctctgcggac accgcagtgc acctggtcac gctgctggaa gacctgccgg
     1741 tggctgagac cctggacacc gtcgtggaac tggatctggc ggacttgcgc ccgggtgcgg
     1801 tcctgatcaa ccgggcgcga ccgtcccggc tgcccacccg gtcggtccac gccgcagcca
     1861 acggccgggt agatgccgac cggatccgtg ccggcctgat cgccgccggt ctggaactgg
     1921 acccagctgt gctcgacggc ttggtcgccg agaccgtgga gcatgcggtc agggcggacg
     1981 ccgaacagca agcgcggatc aggctcgccg acgccggctt gccgctgatc gaattgcccg
     2041 agctcaccga agccggaggc gatggggtcg acctcggcgg gatctacgag ctcgccgagg
     2101 cgttacggga gcagggggtc cggtgaccgg cgagccatga acacgcgcca gacctgcttg
     2161 cagggtcgag ccatcgcagc caccagggtc gagccatgag caccagcccg gcgcctccgc
     2221 tgaacgtgga agcgttgttg agcaaccacg ccattcgggt gctggtgtgc tgcggcgctg
     2281 gaggggtggg taagacgacg accgccg
//
LOCUS       DASVXZ010000750         6647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_893020, whole genome shotgun sequence.
ACCESSION   DASVXZ010000750 DASVXZ010000000
VERSION     DASVXZ010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6647
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_893020"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VF788_15950"
     CDS             <1..468
                     /locus_tag="VF788_15950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8935642.1"
                     /translation="YGRYGERHTVETHLIPLVLQVALGHREKIMVFGQDWPTADGTCI
                     RDYIHVVDLADAHERALEQAVPGEHRIYNLGNGTGFSVQQVLRTCRQVTGHPIPTQSA
                     ARRAGDPAVLIASSDRAHHELGWKPERSELAVIVADAWGFARDASGDVPRHIR"
     gene            complement(687..1136)
                     /locus_tag="VF788_15955"
     CDS             complement(687..1136)
                     /locus_tag="VF788_15955"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HEX8935643.1"
                     /translation="MLACSKLPADNNNSQNNRTQAEETIRQQDGAWLKAIAAKQLDAT
                     MSYYGDGAILLPPNAPTARTKDEIRQFWSQFFTSIPAGAPFSYGTTKIEVASSADLGY
                     AIGFYTLGNPPIDRGKYVEVWKKQADGSWKAIVDTFNSDIPAPPPTR"
     gene            1135..1380
                     /locus_tag="VF788_15960"
     CDS             1135..1380
                     /locus_tag="VF788_15960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935644.1"
                     /translation="MDTANPMQPIKVVMKRAAFPLVGAMGPFLSDSDSPHGRGSRDAQ
                     RANRAKKFIPDLRCAGRIRQLFLGLRAGVFNLSGEYA"
     gene            complement(1608..2651)
                     /locus_tag="VF788_15965"
     CDS             complement(1608..2651)
                     /locus_tag="VF788_15965"
                     /inference="COORDINATES: protein motif:HMM:NF025200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4192 domain-containing protein"
                     /protein_id="HEX8935645.1"
                     /translation="MSAPTAGRIRLSDPSELIAAVPHLLGFHPHDSVVLMALHGKSLG
                     LTLRADLPPADQARPLAEQLLRPIVRQRPTGVALVVVGGDATLDGDPPHRVLVDALDD
                     VLTGAGLPLVHAAWTTETTAGAPWRCYDDPLCTGTVVDPATSPLAAATVAAGAVTFRS
                     REAMAELLAAENPVALQRRAALLDAADAEHPMSTELVEQRLAQLRELHRAASAGDLVL
                     SDSIVAEVASALCDHRVRDACLPWSSGPDAVAAERLWLALVRATPAPERAEPAALLAL
                     VAYLRGDGALASIALDTALQACPQHSLSSLLRAALDGGLSPELLRGVAADAAAALERP
                     SRRSHKRRPRRRR"
     gene            complement(2780..3418)
                     /locus_tag="VF788_15970"
     CDS             complement(2780..3418)
                     /locus_tag="VF788_15970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX8935646.1"
                     /translation="MPLLSRHVVAFLAAVLRSPATVGAVAPSSPHLAARLAAVVPRAG
                     EPVVVELGPGTGSVTTAIEYRLGGRGRHVAVEIDPLLANYLRTEHPGVRVLVGDAVHL
                     ERLFAEHRVPAVDAMVSGLPWSLIEPAAQRAIVEATARSLAPAGSFTTFAYLHALSMT
                     RARQFRALLGEVFDEVLTTRTVWWNLPPAVTYVCRRPRRTPTGVTGRSDAAG"
     gene            3576..3974
                     /locus_tag="VF788_15975"
     CDS             3576..3974
                     /locus_tag="VF788_15975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO5389 family protein"
                     /protein_id="HEX8935647.1"
                     /translation="MSLDVPTALLERAEHGDVDDAEFIDCVRLSLPYAWQVINGVVTE
                     LELAGAAAEFADHEIPPPTESDRGQLLRALASDAIRGGLECHFGVKLAFQNCHRVAAF
                     RRWATEGARYRAFISARGQLLNQSPELRDC"
     gene            4045..5064
                     /locus_tag="VF788_15980"
     CDS             4045..5064
                     /locus_tag="VF788_15980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX8935648.1"
                     /translation="MRFGAFLLAAQFPDQDHSTVLDSTVAAALAAEEAGFDDVWVAEH
                     HFMSYGICPSAITLAGYLLGATQRITVGTAVSVLSTQHPVALAEQAALLDQVSGGRFR
                     LGIGRGGPWIDLEVFGTGMGRYQHGFAESVDLLLAALNRPRLAACGPNFRFPDIDIVP
                     RPRTQPFSEVIVAATTAPTAELAARRGLPLLLGMHANDAEKTALIERYNRLTSGDRPV
                     RHIAAALGYVADSQHEAMATMRASLPRWLGPGLRGYRRADGKPYRPRNPDEYTELLCR
                     MHPVGTPDHCLNTLTSTISRTGIDHVILLVEGAGDRARTLENINRFGAEILPLLQDST
                     PGTSR"
     gene            5128..6039
                     /locus_tag="VF788_15985"
     CDS             5128..6039
                     /locus_tag="VF788_15985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020420677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043248 - proteasome assembly [Evidence
                     IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEX8935649.1"
                     /translation="MPYVNTELYRIDEAPSGVGMVLVHALTGFVDAGHAGRLAVAHLL
                     ANLEHRVVATFDVDQLLDYRSRRPMMIFEEDRWVDYEQPELVLYEVEDCAGARFLLLT
                     GPEPDLQWERFASAVRELVERFGIGLTVGLGAVPMAVPHTRPATVTAHATRRELISGY
                     QRWFNTMQIPGHAGALVELRLGEVGHDAMGFVVHVPHYLARAEYPESARGLLEHLARS
                     SGLSLPVDALLPAAQQALAEVNEQVARSPESLSAVADLETQFDALISESPQRPLLSGD
                     VGPLPTGEEIAAEFEQFLAEQDGSAGN"
     gene            6115..>6647
                     /locus_tag="VF788_15990"
     CDS             6115..>6647
                     /locus_tag="VF788_15990"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020421346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8935650.1"
                     /translation="MSLLGRLATTSAAAWAYLLVGHGEFWLTSTRLPTDPPQPAYWPT
                     VGVVVPARNEAEVLPQTLPTLLAQDYPGELAVWFVDDGSSDGTAALARTLAGRSTRAC
                     TLLSAAPPPPGWTGKVNALQCGVVAAGATGVDVLLLTDADIAHHPSSVRRLVAAAMAD
                     DRDVISLMALLHTQTGW"
BASE COUNT         1131 a         2245 c         2115 g         1156 t
ORIGIN      
        1 tacggccgtt acggcgagcg gcacaccgtc gagacccatc tcatccccct cgtactgcag
       61 gtcgccctcg gtcaccgaga gaagatcatg gtgttcgggc aggattggcc cactgcggat
      121 ggcacctgca tccgcgacta catccatgtg gtggatctgg ccgacgccca tgagcgagca
      181 ctcgagcagg ccgtgccggg cgagcaccgg atctacaacc tgggcaacgg aacgggcttc
      241 tcggtgcagc aggtgctgcg tacctgccgg caggtcacgg gacacccgat cccgacgcag
      301 tccgcggcgc ggcgggccgg ggacccggcg gtcctgatcg cctccagcga tcgtgcacac
      361 cacgagctgg gctggaagcc ggagcgctcg gaactagccg tgatcgtcgc ggatgcctgg
      421 ggcttcgccc gcgacgcctc cggtgacgtc ccccggcaca tccgctgacc gcgccgacac
      481 ctctcatcgt tgccggcgcg accgccgctt gcggggccgg ccgtaggccg ccgaagtcct
      541 gctggggcat ctctcgcgac tccacgcggc agctccggcg gcagcaacgt gaggtagctg
      601 gtggatcgag gtcacgcttg gctgccgtga ccatcagctc acgacgcttg cgcttggaaa
      661 caccgaccca ccagcgccgc agatggtcag cgtgtaggcg ggggggctgg tatgtcggag
      721 ttgaaggtgt cgactattgc cttccacgac ccatctgcct gctttttcca gacctcgacg
      781 tattttcccc tgtcgatcgg cgggttgccc aacgtgtaga aacctatggc gtagcccaag
      841 tcagcggagc tggccacctc gatcttggtg gtcccgtaag aaaagggagc cccagccgga
      901 atggatgtga agaactgact ccagaactgc cgaatttcat ctttggtccg ggcagtcgga
      961 gcattgggcg gcaataggat ggctccgtca ccgtagtagg acatggtggc gtcgagctgc
     1021 ttcgccgcga tggccttgag ccaggcaccg tcttgttgtc ggatcgtctc ctccgcctgg
     1081 gtccggttgt tctgagagtt gttgttatcc gcgggcagct tcgagcaggc cagcatggac
     1141 acggccaacc ctatgcagcc gatcaaggtt gtgatgaagc gagctgcctt cccccttgtt
     1201 ggtgccatgg gtccgttcct ttccgactcc gacagtccgc acgggcgcgg atcgcgcgac
     1261 gcgcagcgtg ccaatagagc taaaaagttt attcctgacc tgcgctgcgc agggagaatt
     1321 cgccaacttt tcttgggatt acgagccggc gttttcaacc tcagcgggga gtatgcgtga
     1381 cctatcccat gtgaggagat cggacctccg acgagcccga ccgtgcacgg cgcgcaacag
     1441 cctcaaggtg acgtagcgtg gtccttgtcc catcgtgagc tgagctgaca cgtgcctggc
     1501 cgacgcgagg gcctcaatgc tgccattcga gcggtgacgc gcagataaac tgtggcgaac
     1561 gcgtcgaagt tcgcctgcgg cgcccgttga actatcacgg tcgccggtca ccgccgtcgt
     1621 cgtggtcgtc gcttgtgaga tctacggcta ggtcgttcaa gggcggccgc agcatcggcc
     1681 gcgacaccgc gcagcagttc cggcgacagt ccgccgtcta aggcggcccg cagcaagctg
     1741 gacagagagt gctgtggaca agcttgcaac gcggtgtcca acgcaatgct cgctagcgcg
     1801 ccatccccgc ggagatacgc caccaacgcc agcagtgctg cgggctcggc gcgctctggc
     1861 gcgggggttg cccgcaccaa agccagccag agccgctccg cggcgaccgc gtctgggcca
     1921 gaggaccagg gcaggcaggc gtcccggacc cggtggtcgc atagcgcaga ggccacctcg
     1981 gcgacgatgc tgtcgctcaa cacaagatcg cccgcggacg ctgcgcgatg cagttccctc
     2041 aactgtgcga gccgctgctc gaccaactcg gtgctcatcg gatgctcggc gtcggcggcg
     2101 tccaggagcg ccgctcggcg ctgcaacgcg acggggttct ccgcagccaa cagctcagcc
     2161 atcgcctcgc ggctacgaaa ggtcaccgca ccagccgcga ccgtcgcggc cgccagcggg
     2221 cttgtcgcag gatcgaccac agtgccggtg cacaggggat cgtcgtaaca gcgccacggc
     2281 gctccagccg tcgtctctgt cgtccacgcc gcgtgcacta aaggaagtcc tgcgccagtc
     2341 agcacgtcat cgagagcatc caccaatacg cggtgcggag gatcgccatc aagagtcgcg
     2401 tcacccccga ctacaacaag agcgacaccg gtgggccgct gcctgacgat cggtcgtagc
     2461 aactgctcgg ccagtggccg agcctggtcg gcagggggca gatcggcccg caacgtcagt
     2521 ccgagacttt tcccgtgcaa agccatgagg accaccgagt cgtgcggatg aaaaccgagc
     2581 agatggggta cggcggcaat cagctcggac gggtcagata gccggatacg gccggcagta
     2641 ggtgcgctca tgacgttgga cagtcctcgc acggcatgcc ggggaacagc cacgcgatcg
     2701 ccagctgtgg actacggggg gcaatgtgga ttacttgccc ctttgtaatc cagggtgcac
     2761 aaactgtcgg aggaggtggc tatcctgccg cgtcgctacg accagtgact cctgttgggg
     2821 tcctccgcgg tcgccggcag acgtaagtca ccgccggagg aaggttccac cagacggtgc
     2881 gcgtggtgag cacttcgtcg aaaacctccc ccagcaacgc ccggaattgt cgtgctctcg
     2941 tcatggacag cgcgtgcagg taggcgaacg tcgtgaagct acccgcgggt gccagcgagc
     3001 gcgcggtcgc ctccacgatc gcccgctgcg cggctggctc gatcagcgac cagggcagcc
     3061 cgctcaccat ggcgtccacc gccggcaccc ggtgctccgc aaacaaccgc tccaggtgca
     3121 cggcgtcccc gaccagcacc ctgacacctg gatgctcggt gcgcaggtag ttggccagca
     3181 gcgggtcgat ctcgaccgcc acatgccggc cacggccgcc gagccggtac tcgattgccg
     3241 tcgtgaccga cccggtgccc gggccaagct cgaccacgac cggctctccg gcacggggta
     3301 ccacggcggc cagccgagcc gccagatgcg gggaactcgg cgccaccgca ccgaccgtgg
     3361 ccgggctgcg cagcaccgca gcgaggaacg cgacgacgtg tcgcgaaagc agtggcatgg
     3421 tgccagatcc tcccgccggg acgttgcttt tgtgaaatcg atctctgcta gatccccgat
     3481 tgacctgacc gaccccaatt gacactgaca accgttatcc ttgactctcg tcccccggcc
     3541 accacgtcca tgatcgcacc ccaccggagg aaaccatgtc tctagacgtt cccaccgcgc
     3601 tgcttgagcg cgccgagcac ggcgacgtag atgatgccga gttcattgac tgtgtgcggc
     3661 tatcgctgcc atacgcgtgg caggtcatca acggcgtggt gactgagctc gaactcgccg
     3721 gggcggctgc cgagttcgcc gatcacgaga ttcccccacc caccgagtca gaccgagggc
     3781 agctgctgcg agcgctggct tccgatgcca tccggggcgg tctggaatgc cacttcgggg
     3841 tgaagctggc gttccagaac tgccaccggg ttgccgcatt ccgacgctgg gcaaccgagg
     3901 gcgctcgcta ccgcgcattc atctccgcac gcggtcagct gctcaatcag agtccggagc
     3961 ttcgagactg ctgatcacgt gactggtgag gggtcggcag catagtcagg gtgtgggccc
     4021 ctctcaaacc attcaaggtg ggtcatgcgg ttcggggctt tcctgctcgc cgcccagttc
     4081 cccgaccagg accacagcac cgtgctggac tcgacagtcg cagcagcgct cgccgccgag
     4141 gaggctggct tcgacgacgt ctgggtcgcc gaacaccact tcatgtccta cgggatctgc
     4201 ccctcagcga tcactttggc ggggtatctg ctcggcgcca cccaacgaat aacggtcggt
     4261 accgccgtca gcgtgctgtc cacccagcac ccggtggcgt tggccgagca agccgccctg
     4321 ctcgaccagg tttccggtgg acgcttccgt cttggtatcg gtaggggtgg cccgtggatc
     4381 gacctcgagg tattcggtac cggtatgggc cgctaccagc acggcttcgc cgagtccgtg
     4441 gacctgctgc tggccgccct gaaccggccc cgccttgccg cctgcgggcc gaattttcgt
     4501 tttcccgaca ttgacatcgt cccgcgaccg cggacgcagc cgttttctga agtcatcgtg
     4561 gccgctacca cggcccccac tgcagagctc gccgcccgcc gcggactgcc gctgctgctc
     4621 ggcatgcacg ccaatgatgc tgaaaaaacg gccctcatcg aacgttacaa ccgcctaacc
     4681 agcggtgacc gcccggtccg gcacatcgcc gctgcactcg gctacgtcgc cgacagccag
     4741 cacgaggcca tggccaccat gcgggcttcc ctcccccgct ggctcggacc cgggttgcgc
     4801 ggctaccgcc gcgccgatgg caagccgtac cgcccgcgca atcccgatga gtacactgag
     4861 ttgctatgcc gcatgcaccc tgtcggcacc cctgatcact gtctcaacac gctcaccagc
     4921 acgatctccc ggaccggcat cgaccatgtg attcttctgg tcgaaggtgc cggcgaccgc
     4981 gcgcgcactt tggagaacat caatcgcttc ggtgccgaga tccttccctt gctgcaagac
     5041 agcactccag gcacctcgcg ctgacgtacc agccgtatcc ggccaggtcg agacccagat
     5101 gggatgaatc tgccaacgtc ccgcgttatg ccttacgtga ataccgagct gtatcgaatc
     5161 gacgaagctc cgagtggggt cggcatggtg cttgtgcacg ccctcactgg ttttgtcgac
     5221 gccggccacg ccggacgcct ggcggtcgcc catctgctgg cgaatctgga gcaccgagtg
     5281 gttgccacct tcgacgtcga ccagctgctg gactaccgct cccgccgacc aatgatgatc
     5341 ttcgaggagg atcggtgggt cgattacgag cagcccgagc tggtgctcta tgaagtcgag
     5401 gactgcgccg gcgccagatt cttgctattg actggcccgg aaccggatct gcagtgggag
     5461 cgattcgcca gcgcggtccg tgagctggtc gagcgcttcg gaatagggtt gacggtgggt
     5521 ctgggcgcgg tgccgatggc agttccacac actcgaccag cgacggtgac tgcccacgcg
     5581 acacgtcgtg agttgatctc cgggtatcag cgatggttca acaccatgca gatccccggt
     5641 cacgcaggag cgctggtgga gctgcgtctg ggcgaggtgg ggcacgacgc gatgggcttc
     5701 gtggtccatg tgccgcacta tctcgcacgg gctgagtatc cggaatcggc tcgcggcctg
     5761 ctggagcacc tggctcgcag cagcggactg agcttgccgg tggacgctct acttcccgcc
     5821 gcacagcaag cgctagccga agtcaacgag caggtggccc gctcgcccga gagcttgtcc
     5881 gcggtggccg acctggagac gcaattcgac gccctcatca gcgagtcccc tcagcggcct
     5941 ttgctgtccg gcgacgtggg tccgttaccc accggtgagg agatcgcggc ggaattcgag
     6001 cagttcctcg ccgagcagga cggctccgcc gggaactgat ccgatctgca caatgattta
     6061 gttgcggctg gtcgcgccgt cacatgtgcg cggtgaagct ggcatgctcg gcgagtgtcg
     6121 ctgctcggcc gactcgcaac cacgtccgcc gcagcgtggg cgtatctcct tgttgggcac
     6181 ggtgaatttt ggctgacctc gacccgctta ccgaccgacc cgccgcaacc ggcctactgg
     6241 cccactgtcg gagtcgtcgt gcccgcgcgg aacgaggcgg aagtgcttcc ccagacactg
     6301 cccacgctgc tcgcccagga ttatccgggc gagctcgccg tgtggttcgt cgacgacggc
     6361 agcagcgatg gcacagcggc gctcgcgcgc actctcgccg gccggagtac ccgtgcgtgc
     6421 actctgctga gcgccgcacc cccacctccc ggctggaccg gcaaagtcaa cgcgctccag
     6481 tgtggcgtgg ttgcagccgg ggccaccggg gtcgatgtcc tgctgctcac cgacgccgac
     6541 atcgctcacc acccgtcctc ggtgcgccga ctggtcgccg ccgccatggc agatgaccgc
     6601 gacgtcattt cgctgatggc cttgctccac actcaaaccg gttggga
//
LOCUS       DASVXZ010000751         3680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_580441, whole genome shotgun sequence.
ACCESSION   DASVXZ010000751 DASVXZ010000000
VERSION     DASVXZ010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580441"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /locus_tag="VF788_15995"
     CDS             <1..765
                     /locus_tag="VF788_15995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8935651.1"
                     /translation="SVVVSTVVFSLADPALAWRLLFWTGALPALLVLYIRRRVVDAPI
                     VAQRKVRDQHRDSIGAIFGRRLAWTTCCAALLATGVQGGYYTLATWIPAYLKTQRHLT
                     VLGTGTYLVVLISGAFAGYLAGSYLTDLLGRKWTFILFATLSAGLIVAYTHVPTGANT
                     TVLVLGFPLGFCTSAIFSGFGSYLAELYPTAHRGTGLGFTYNVGRAVGALFPTLVGFL
                     AASWGLGGALALGALAYGLAVLALFGLPETCGRELL"
     gene            795..917
                     /locus_tag="VF788_16000"
     CDS             795..917
                     /locus_tag="VF788_16000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935652.1"
                     /translation="MTTIEDPSALSPIEARALFRAGTNTATSGWAAGHTQANLT"
     gene            1216..1362
                     /locus_tag="VF788_16005"
     CDS             1216..1362
                     /locus_tag="VF788_16005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935653.1"
                     /translation="MCQPTVRIELVLRLDPQVAASFLWDRIIDIIVKETFHAATSPLD
                     GPLS"
     gene            1413..2132
                     /locus_tag="VF788_16010"
     CDS             1413..2132
                     /locus_tag="VF788_16010"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX8935654.1"
                     /translation="MKRGLSGVVVLAIGAVALAGCSGGSEPAAATSTSAGSASSITTR
                     GLGTVTRTPDTVTMVIGVQSRAQSAKAALDANTDRATALINVLKSKGVAPADLQTSQL
                     SVNPTSDPATGRITGYEVTNQVTAKLHDIGTAGGLIDAAGEAAGDAVRLQQLSFSIAD
                     DSAARAQARANAVRQAQAHAKQMADGAGVRLGKIRSITEVPVSPPGPLGRDATAAAPV
                     PIEPGTQDLNVMVEVVYAIDQ"
     gene            2475..2834
                     /locus_tag="VF788_16015"
     CDS             2475..2834
                     /locus_tag="VF788_16015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935655.1"
                     /translation="MGRRREDLDRGGRGRAGVAGEDHQRNPATGGGETTRGRQWPGPS
                     ELSPASLTSGPAPQGLPGIGAGLQRDAGGLIRNLELRGARYRRGRRCFRPHPITQGAQ
                     LLDREDLVTIRLVHNVV"
     gene            complement(3135..>3680)
                     /locus_tag="VF788_16020"
     CDS             complement(3135..>3680)
                     /locus_tag="VF788_16020"
                     /inference="COORDINATES: protein motif:HMM:NF023502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3558 domain-containing protein"
                     /protein_id="HEX8935656.1"
                     /translation="ALAGCGTGTATPPQPVQSTSTQAANPIPPVKNPRDVAAIAHRTC
                     DLLTPQQAKNLGLDLPPTPSDGPFGTQYCVWQNITSEGLMTKRLSVSVTTNNATLEVS
                     YNQYRSRPDFNLVEIAGYPALISRSNVNLPSCDIDIKLAERQSVSITYIAREFSSNPQ
                     QSCVTAKQVMAAVVMNVPPKS"
BASE COUNT          603 a         1203 c         1238 g          636 t
ORIGIN      
        1 tccgtggtgg tctccaccgt cgtgttcagc ctggccgacc ccgccctcgc ctggcggttg
       61 ctgttctgga ccggcgcatt gccggcgctg ctggtgctct acatccgcag acgggtcgtc
      121 gacgcgccaa tcgtggcgca gcgcaaggta cgcgatcagc accgcgactc gatcggagcg
      181 atcttcgggc gacgcctggc gtggaccacc tgctgtgcgg cgctgttggc caccggcgtt
      241 caaggcggct actacacgct ggccacctgg ataccggcat atctcaagac ccagcggcac
      301 ctgaccgtgc tgggcaccgg gacctacctg gtggtcctca tctccggagc gttcgccggc
      361 tacctcgccg gtagctacct caccgacctt cttggccgga aatggacctt catcctattc
      421 gccacgttgt ccgcgggcct cattgtcgcc tacacccacg ttcccaccgg ggcgaacacc
      481 accgtcctgg tcctgggctt tccactcggc ttctgtacct cagcaatctt cagtggtttc
      541 gggtcgtacc tcgccgagct gtacccgact gcgcaccgcg gaaccgggct gggattcacc
      601 tacaacgtcg gtcgggccgt tggggcgttg ttccccacgc tggtcgggtt cctcgctgcc
      661 agctggggct tgggtggcgc gctggcactc ggtgctctcg cttacgggct cgccgtgcta
      721 gccctgttcg gcctgcccga aacctgcgga cgcgaactcc tctgagccgc ttgcctcatt
      781 catggagccg acctatgacc acgatcgaag atccctcggc cctgagcccc atcgaggcgc
      841 gggccctgtt ccgggccggc accaacacgg caacctccgg ttgggcagcc gggcacaccc
      901 aggccaacct cacttgatgg cctcccacca caccacgctc gcgggcaacc cgcaccaccg
      961 ataaggaaag ggcggcgatc atgtcaacac ttcaccggag cgcgagtaat cgtggcggga
     1021 cacaccgcag aacacggtga tctggcaagt agcgggcgcg gttctgttga tctgcatcgg
     1081 gctgctgctc ggagggacct ggaccaccca ggccctccaa gccacgcttc gccaccaggc
     1141 cgaggagcgt cgcaggctca acgaggagtg gttggcggtt cgcgccgcgc gccgacagcg
     1201 gggcacgtgc ccacgttgtg ccagcctact gtccgaatag aactggtact tcgcctcgac
     1261 ccgcaggtgg ctgcgtcctt cctgtgggac cgcatcatcg acatcatcgt caaggagacc
     1321 ttccatgcgg ccacaagtcc tctggacggg ccactcagct gaccgccgaa gctggcagga
     1381 gtgaccgcac tgatcactga acggagatcc tgatgaagcg tgggctatct ggtgtggtgg
     1441 ttctcgccat cggcgcagtc gcgctggctg gttgctccgg cggcagtgaa ccggccgcgg
     1501 caacgtcgac cagcgctgga tcggcttcga gcatcaccac ccgtggccta ggaacggtca
     1561 ccagaacccc ggacaccgtg accatggtta tcggagtgca gagccgggcg cagagcgcga
     1621 aggcggcact agatgccaac accgacaggg cgaccgcgct gatcaacgtg ctgaagagca
     1681 agggagtcgc cccggcggat ctgcagacca gccagttgtc ggtcaacccg acgtccgacc
     1741 cggcgaccgg gcggatcact ggctacgagg tgacgaacca ggtcacggcc aagctgcatg
     1801 acatcggaac cgccgggggg ctcatcgacg cggccggtga ggcagcaggt gacgcggtgc
     1861 ggctacagca actgagtttc tcaatcgcag acgacagcgc agcacgggcg caggctcgcg
     1921 ccaacgcggt gcggcaggcc caggcacacg ccaagcaaat ggccgacggg gccggcgtga
     1981 ggctgggcaa gatccgctcg atcacggagg taccggtcag cccaccgggt ccgctaggac
     2041 gggatgccac ggcggctgcg cccgtcccca tcgagcccgg tacccaagac ctcaacgtca
     2101 tggtcgaagt cgtctacgcc atcgaccagt agttctcatc ccggcgcggc cggggaccat
     2161 gaggtcggag ttctggtgag cgtgggctgc ggctccgtcg ccgcgctcgg ggtgccagcg
     2221 cggtcagccg ctgcaccggg cggtggcccg ggctcgggaa ctctcgcacg cgagggtcga
     2281 gcggcggggg gctttgctga gggcgggggg tcaaagcggt atgtggcccg aggtgggggc
     2341 accgcggcgg ttggcggctc tgtcgtgccg tcagcggatg ggctcggtgc aggggcaatg
     2401 ggtaccggga gaacgatcga gggttctgct gtcgaggaaa cgctcgcggg cgctgaggtg
     2461 gtcacggagg gcgcgtgggt cgccggcgtg aagacctcga ccgtgggggg cggggcagag
     2521 cgggagtggc cggtgaagac caccaacgca accccgccac cggcggcggc gagacaaccc
     2581 gcggccgcca gtggcctggc ccatcggaac tcagcccagc gtcgctgacc tctggcccgg
     2641 cgccgcaagg cctcccaggg atcggcgcgg gcctccagcg ggacgccggc ggcctgatcc
     2701 ggaatctcga actgcgcggc gctcgctacc ggcgcgggcg ccgctgcttc cgcccccatc
     2761 cgatcacgca gggagcgcag ctcctcgatc gtgaggatct ggtcactatc cggctcgtcc
     2821 acaacgtcgt ataacgagtt gccggacctg cttggtactg gtttgcccta ttttcacgga
     2881 tggtaactcc cgccaccgac ctggccagct ggtgcgtgct tgcgtctgac cgctggttga
     2941 cccggtgacc tggcgtaacg ggtggctggg agcgtggttt gcgatcaagc ttcctctagt
     3001 gccatggacg cggtgtcact gtcggtgagg gctagggagg ggaggatcga cccgcctccc
     3061 cgacgatcgc gcgtcagccc gcgagctcgg cggctcccat gctgctggac tcgacgagat
     3121 ggtcggctgc aaactcaact cttcggcggc acattcatca ccaccgccgc catgacctgc
     3181 ttggcggtca cgcatgactg ctgagggttg ctgctgaatt ccctcgcgat gtaggtgatc
     3241 gagacgctct gccgctccgc aagcttgata tcgatatcac aactaggaag gttgacgttc
     3301 gatcgagata tgagggcggg ataaccggcg atctcaacaa gattgaagtc cggccgcgac
     3361 cgatactggt tgtacgagac ttctaaagtc gcattgttcg tggtgacgct aacggacagt
     3421 cgcttggtca tcaatccctc agatgtgatg ttttgccaca cgcagtactg cgtgccgaac
     3481 ggaccgtccg atggtgtcgg tggcaggtcg agaccgaggt ttttcgcctg ttggggtgtc
     3541 agtagatcgc atgtgcggtg ggcaatggcc gcgacatcgc gcgggttctt caccggcggg
     3601 atcgggttcg ccgcctgggt ggaggtcgat tgcacgggct gcggcggcgt cgccgtgccc
     3661 gtgccgcaac ccgccagcgc
//
LOCUS       DASVXZ010000752         4685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_265932, whole genome shotgun sequence.
ACCESSION   DASVXZ010000752 DASVXZ010000000
VERSION     DASVXZ010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4685
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265932"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VF788_16025"
     CDS             <1..198
                     /locus_tag="VF788_16025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macro domain-containing protein"
                     /protein_id="HEX8935657.1"
                     /translation="LRVADDLGARIVAFPAISAGIYGWPLDDAAHIALTTVRNTSTSI
                     DEARFVLFNTAALDAFRSAQL"
     gene            400..2061
                     /gene="ilvD"
                     /locus_tag="VF788_16030"
     CDS             400..2061
                     /gene="ilvD"
                     /locus_tag="VF788_16030"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX8935658.1"
                     /translation="MDVKPRSRDVTDGLERAAARGMLRAVGMGDDDFAKCQIGVASSW
                     NEITPCNLSLDRLAKASKEGVHAAGGFPMEFGTISVSDGISMGHVGMHYSLVSRELIA
                     DSVETVVEAERLDGTVLLAGCDKSLPGMLMAAARLDLAAVFLYGGTILPGRVEGREVT
                     IIDAFEAVGACLRGRISRADVDAIERAICPGEGACAGMYTANTMACAAEALGMSLPGS
                     ASPPAVDRRRDGFARASGSAVVNLIRRGITARQILTRPAFENAIAVVMAFGGSTNAVL
                     HLLAIANEAGVPLELDDFNRIGAKVPHLADVKPFGVHVMASVDQVGGVPVVMKALLDA
                     GLLHGDCLTVTGRTVAENLTELDPPDLDGKILHSLADPIHPTGGITILRGSLAPEGAV
                     VKSAGFDSTRFDGRARVFDGEQAAMDAIPDLQPGDVVVIRYEGPRGGPGMREMLAVTG
                     AIKGAGLGKDVLLLTDGRFSGGTTGLCVGHVAPEAAHGGPIALVRNGDPIVLDMDRRE
                     LNLQVDEDELARRQQEWKAPQRLLRGVLAKYARLVGSAADGAVCG"
     gene            2158..3048
                     /locus_tag="VF788_16035"
     CDS             2158..3048
                     /locus_tag="VF788_16035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX8935659.1"
                     /translation="MGVRVASADVVRVGTSGWVYPPWRGTFYPSGLPHRQELHYLSHQ
                     LNSVEINGSFYSLQRPSSYQSWAALTPEDFVFAVKGSRFITHMKKLRDVQTPLANFFA
                     SGVLALGAKLGPLLWQLPPNLAFDADRLAAFVTLLPRSTTEAASLGRQHDERLAGPAW
                     TCADGDYPLRHALEVRHPSYRDPALIELLRAHGVALVVADTAGRWPYLEDLTADFVYI
                     RLHGDTELYVSGYTDETLDTWAQRIRGWQAGESPRTEHTIAPPPPLRRREVFVYFDND
                     AKVRAPTDAISLAQRLAGRR"
     gene            complement(3107..3928)
                     /locus_tag="VF788_16040"
     CDS             complement(3107..3928)
                     /locus_tag="VF788_16040"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX8935660.1"
                     /translation="MDSLRGVQRWPVNSVAVALVGASGVAVSSHGPQDRPFRLASVTK
                     LLSAYAVLLAVQEGAVEFDQPAGPPGATVRHLLAHTSGLAFDTPRASVAPGAKRIYSN
                     AGFVVLADAVASSSGISFAEYLAEAVLRPLGMVSSHLEGSPAAGAVSTCADLARFAAE
                     LQAPRLLAREILAEATRVAYPGLDGVLPGYGMQHPNDWGLGFELRSHKSPHWTGSRNS
                     PETFGHFGQSGTFLWVDPVASAACVALTDRDFGPWAHDLWPAFSDGVLTELAAHL"
     gene            3927..>4685
                     /locus_tag="VF788_16045"
     CDS             3927..>4685
                     /locus_tag="VF788_16045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX8935661.1"
                     /translation="MPSDGTQAWQDRFVHSDRLLLGPGPSNPYPEAMEALNRPVLGHL
                     DPEFLTLVADTAQRLRTVFGTRNRLTVPVSGTGSSGMEACLASLLEPGELAIIGVNGY
                     FGERLCEVARRVGAQVQSVHAPWGRALDPEALLDAQRAAPQARLVAVVHAETSTGVRN
                     DIAPLHELQNTDTLLLLDTVTSLGGVPVEVDAWGIDACYSATQKCLGAPSGIAPVTLS
                     DRAVQRIRDRQRPVCSFYLDLTLLDGYYQGDPPRY"
BASE COUNT          746 a         1550 c         1626 g          763 t
ORIGIN      
        1 ctgcgggttg ccgacgacct cggtgcgcgc atcgtcgcgt ttcccgcaat atccgccggt
       61 atctacggct ggccgctgga cgacgccgcc cacatcgcac tgacgacggt ccggaacact
      121 tccaccagca tcgacgaagc ccgcttcgtc ctcttcaaca ccgcggccct ggatgcgttc
      181 cgcagcgccc agctatagct ggaaatgagg ctatccctgg tcatccgtag tctaggcggc
      241 ctgtcagggc cctgtgtcga gtactagttc gaggcatacg cagcagtaag gcggggggtc
      301 gagctgtccc gacatggagc catatcgggg ctgccgagcg cccgaaaccc cgatatggct
      361 ccatgtcggg aataggagcg atgcgggatg ctacgggaca tggatgtcaa gcctcgtagt
      421 cgagacgtca ctgatgggct ggaacgtgct gctgcgcgtg ggatgttgcg ggccgtcggt
      481 atgggtgacg acgatttcgc caagtgccag atcggtgtcg cctcgtcgtg gaacgagatc
      541 accccgtgca acctgtcgct ggaccggctc gccaaggcga gcaaggaggg tgtgcacgcg
      601 gccgggggct tcccgatgga gttcggcacg atctcggtct ccgacggcat ctccatgggc
      661 cacgtcggga tgcactactc gctggtgtcc cgtgagttga tcgccgactc ggtggagacc
      721 gtggtggagg ccgagcggct ggacggcacg gtgctgctgg ccggttgcga caagagcctg
      781 cccgggatgc tgatggccgc cgcccggctc gacctggcgg cggtgttcct ttacgggggc
      841 accatcctgc ccgggcgggt cgagggtcgg gaggtcacca tcatcgacgc cttcgaggcg
      901 gtgggggcgt gtttgcgtgg ccggatcagc cgcgcggacg tcgatgcgat cgagcgcgcg
      961 atctgccccg gcgagggggc ctgcgcgggc atgtacaccg ccaacacgat ggcctgcgcg
     1021 gcggaggcgc tgggcatgtc gctgcccggc tcagccagcc cgcctgcggt ggatcggcgt
     1081 cgcgatgggt tcgcccgggc cagcggcagc gccgtggtga acctgattcg acgcggcatc
     1141 accgcccggc agatcctcac ccgcccagcg ttcgagaacg cgatcgcggt ggtaatggcc
     1201 ttcggcggct cgaccaacgc ggtactgcac ctgctggcca tcgcgaacga ggctggcgtg
     1261 ccgctggagc tggatgactt caaccggatc ggtgccaagg tgccgcatct cgccgacgtc
     1321 aagcccttcg gtgtgcacgt gatggcttcg gtcgatcagg tcggcggtgt accggtggtg
     1381 atgaaggccc tgctggacgc cggattactg cacggagact gcctcaccgt caccgggcgc
     1441 accgtggccg aaaatctcac ggagctggac ccgcccgacc tggacggcaa gatcctgcac
     1501 agcctcgccg acccgattca tcccacggga gggatcacca ttctgcgcgg ctcgctggcc
     1561 cccgagggcg cggtggtgaa gagtgccggc ttcgactcca cccggtttga cgggcgtgct
     1621 cgggtctttg acggggagca ggccgccatg gatgccattc cggatctgca gcccggcgac
     1681 gtcgtggtga tccggtacga gggtccgcgg ggcggcccgg ggatgcgcga aatgctcgcg
     1741 gttaccggcg cgatcaaggg cgcaggattg ggcaaggacg tcctgctgct cactgacggg
     1801 cggttttccg gcggcaccac cggattgtgc gtcggccacg tggctcccga ggcggcgcac
     1861 ggtggcccca tcgcgttggt ccgtaacggc gacccgattg tgctggacat ggatcgccgc
     1921 gagctgaacc tgcaggtcga cgaggatgag ctcgctcgcc gccaacagga atggaaagcc
     1981 ccgcagcgcc tcctacgcgg tgtactggcc aagtacgccc ggctggtcgg ctctgccgcc
     2041 gacggcgcgg tgtgtggata acccgtgagt gggaatcggg gtgatagctc gcatcgccac
     2101 tcacagggcg gtagccccga tcgacgaggg ctgcccgtct tgacggggga gtgccggatg
     2161 ggcgtgaggg ttgctagcgc agacgtggtg cgcgtgggga cgtcggggtg ggtgtacccg
     2221 ccgtggcggg ggacgttcta cccgtctggc ttgccgcacc ggcaggagct gcattacctg
     2281 tcacaccagc tgaacagcgt tgagatcaac ggctcctttt actcgctgca gcggccgtcc
     2341 agctaccagt cctgggcggc cttgacaccg gaggatttcg tctttgcggt caagggcagc
     2401 cggttcatca cccatatgaa gaagctacgt gacgttcaga cgccactagc gaatttcttc
     2461 gcctccgggg ttcttgcact aggcgccaaa ctcggcccgc tgctctggca gttaccgccc
     2521 aaccttgcct tcgacgccga ccggctggcc gcctttgtca ccctgctgcc gcgcagcacc
     2581 acggaggcgg ccagcctcgg gcggcagcac gacgagcggc tcgcgggccc ggcctggacc
     2641 tgcgccgatg gtgactaccc gcttcgccat gcgctggagg ttcgccaccc cagctaccgc
     2701 gacccggcgc tgatcgaatt gctccgcgcc cacggtgtcg cgctggtggt ggccgacacc
     2761 gcgggccgct ggccgtacct ggaggacctc accgcagact tcgtctacat ccggctgcac
     2821 ggcgacacgg agctgtatgt cagtggctac accgacgaga cgctggacac ctgggcgcag
     2881 cggatccgtg gttggcaggc tggggagagc ccacgcactg aacacaccat cgccccaccc
     2941 ccgccactgc ggcgcaggga ggtgttcgtc tacttcgaca acgatgccaa ggtgcgcgcc
     3001 ccgaccgacg cgatctcgtt ggctcaacgg ctcgcaggga gacggtgagg tgcggggctg
     3061 gatcttcagc ccgggccggg tcgaggacag ctggcagatc gaagggttac aggtgggcgg
     3121 ccagctcagt caacaccccg tcgctgaacg ctggccagag gtcgtgggcc cagggaccga
     3181 aatcgcggtc agtcagtgcg acgcaggctg cgctggcaac cgggtccacc cacaggaagg
     3241 tgccggattg gccgaagtgc ccgaaggtct cgggcgaatt ccggctgccc gtccagtgtg
     3301 gacttttatg gctccgcagc tcgaagccca gcccccagtc gttggggtgc tgcatgccgt
     3361 agccaggcag caccccgtcc agacctgggt aggccacccg agtcgcctcg gcaaggatct
     3421 cccgcgccag cagtctcggg gcctgcaact cggcagcgaa ccgggccaaa tccgcgcagg
     3481 tggacaccgc acccgcggca ggcgaaccct ccaggtggga cgagaccatc cccaacggtc
     3541 gcagcactgc ttctgccagg tattcagcaa aggaaatacc ggacgaggaa gcgaccgcat
     3601 cggccagcac cacgaacccg gcgttggagt agatccgctt ggcgcccgga gcgaccgacg
     3661 cccgcggcgt gtcgaacgcc aagcccgaag tgtgtgccag gagatgccgc accgtggcgc
     3721 ccggcggccc agccggttgg tcgaactcca cggcgccctc ttgcaccgct agcagcactg
     3781 cataggcgga gagcaacttg gtcaccgagg cgagccggaa cggccggtcc tgcgggccgt
     3841 ggctgctcac cgcgacaccg gaggcgccga ccagcgcgac ggccaccgag ttgaccggcc
     3901 accgctgcac gccacgcagg ctatccatgc ccagcgacgg tacgcaggcg tggcaagatc
     3961 ggtttgtgca ctccgaccgc ttgctcctcg ggcctggacc gtcgaatcct tacccggagg
     4021 ccatggaggc cttgaatcgc ccagtgctcg ggcatctgga tcccgagttc ctcacgctgg
     4081 tggccgacac cgcgcagcgg ctgcggacgg tgttcggcac ccgcaaccgc ctcaccgttc
     4141 ccgtcagcgg aacggggtcg tcgggcatgg aggcctgcct ggccagcctg ctcgagccgg
     4201 gcgagctggc cattatcggt gtgaacggct atttcggtga gcgactgtgt gaggtggccc
     4261 gccgagtggg cgcgcaggtg cagagcgtgc acgccccgtg ggggcgggcc ctggatcccg
     4321 aagcgctgct cgacgcccaa cgcgccgcgc cgcaagccag gctggtcgcg gtggtgcatg
     4381 cggagacctc gaccggcgtg cgcaacgata tcgccccgct gcatgagttg cagaacactg
     4441 acacgctgct gctcctcgat accgtcacct cactgggcgg ggtccccgtc gaggtggacg
     4501 cctgggggat cgacgcctgc tactcggcga cccagaagtg cttgggcgcg ccgtcaggga
     4561 tcgcgccggt gaccctgtcc gatcgggcgg tgcagcgaat ccgggacagg caacggccgg
     4621 tctgctcctt ctatctcgat ctgaccttgc tggacggcta ctaccagggc gacccgcccc
     4681 gctat
//
LOCUS       DASVXZ010000753         4820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_533544, whole genome shotgun sequence.
ACCESSION   DASVXZ010000753 DASVXZ010000000
VERSION     DASVXZ010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533544"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..806
                     /locus_tag="VF788_16050"
     CDS             <1..806
                     /locus_tag="VF788_16050"
                     /inference="COORDINATES: protein motif:HMM:NF020683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="galactose oxidase-like domain-containing
                     protein"
                     /protein_id="HEX8935662.1"
                     /translation="ASNGQVFASEPDAKTYDAGKVIHIGGSNNGATDVPTAAAKVIDL
                     CTNPPAWRQITSMHFPRRQHNATILADGSVLVTGGTSGPGFNDLSPGKPIHVAELWDP
                     VADAWTKLAAEDVDRCYHGTAVLLPDATVLSAGGGEFTVGSEPNDPQDNHRNAQIFHP
                     PYLFYGPRPKIASAPKGIAYGETFPLQISGSDVGKVTWIRLPSVTHAADQSQRFAFLE
                     FRRDGDWLTITAPEGPEICAPGHYMLFVLSKAGVPSLARIVRIGSRGML"
     gene            964..1269
                     /locus_tag="VF788_16055"
     CDS             964..1269
                     /locus_tag="VF788_16055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935663.1"
                     /translation="MGGPANHIDRRLEDLVPGSEVWEIARRFRLHRYRHSDAQHQTVE
                     VEMMFNRDIGWRVVAMDAARDISASGPPHPDLNVAITRVRWQDLDGQGVPPQRSNDT"
     gene            1325..2587
                     /locus_tag="VF788_16060"
     CDS             1325..2587
                     /locus_tag="VF788_16060"
                     /inference="COORDINATES: protein motif:HMM:NF014503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935664.1"
                     /translation="MSSYNALVAAVLTTLVVLAGCQAVGAGSTAGDAAPVVLFPAFHL
                     TKLQVEVHDQVVAPECPRSGGFEDWFRNDHPSATFSQVCQDKLLTLRYDASPSIPMPQ
                     RFADQHGVTVQVKNYGRTESAPFYEPLYKALESTGYIRNRDIRIAGYDSRLTPDIGDF
                     LQRTKKLIEDTYRDNGNRPVHLVGHSNGPLYVQYLLTHTTRAWRTTYVHGFTPLAGNF
                     PGQGLLYPVLFTGLNIEDFGYPGTKDNAESSARLYRSAPSTYLSAADPRIFGDRETVI
                     EDAATGRSYTPRDYPRLITDANLDWAKDIADYYIGFVKFTDPASFPDVDVYAEKGSGV
                     QTVIGAQLANLIPGQVVTASTKFFTRDGDGNQEDITNDAVLAWGALRCFHFSLTDNPG
                     VDHFSLPSNPNVLRRLLVDLERPRERCP"
     gene            2777..3025
                     /locus_tag="VF788_16065"
     CDS             2777..3025
                     /locus_tag="VF788_16065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935665.1"
                     /translation="MTVQIAIRLDDALAENARAAAVAAGTNLSEWVRSAIRQQAALAT
                     ALRARAEEDSGPSMYTDEQEEALLAARRGRAVTAFNHQ"
     gene            3076..3363
                     /locus_tag="VF788_16070"
     CDS             3076..3363
                     /locus_tag="VF788_16070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935666.1"
                     /translation="MWESPDETIGSMRYLVVSSDAYNTAFGDRRVIAVEVDSHAVYHG
                     AYREPITDAGTAHLDRLIWVTRRQLVELVAELHPDRHASVTGIIRELIGNS"
     gene            complement(3377..>4820)
                     /locus_tag="VF788_16075"
     CDS             complement(3377..>4820)
                     /locus_tag="VF788_16075"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEX8935667.1"
                     /translation="TPQQPARLLPTQFDLVDTGDLMPPRRDAVIMREHVRLADDGGAE
                     IDISVTPGRHVRPIGEDIQAGRLLLPAGHRIRPVDVAALAAAGHHTILVRRQPVVAVL
                     PTGDEVRPVGTVLTPGEVLDTNSLMLAGMVEEVGGEALRLPIAPDCPDQLGAAVAQAA
                     QRADAVLVIAGSSAGRGDHTATVVRRLGRIAVHGVAMRPGHPVLLGVLTGQRPVPVVG
                     VPGYPASAERAFACFVGPLLRRMLERGGSAGEEGVPARLGCAVSSPEHLAEYLRVRLA
                     SIVDPRTGRKALVAIPLRRGAGALNTIIQAEAVLPIPLGTNGFAAGAEVRPVPVAGAA
                     FGSTTTIISGLRSPATDALLELRHDEVPRGSVHWTESGVQDASDALETGLCHAIALAL
                     SQGADGPVIDPIAALVERVGEVTVIEIARIGSSSEVLVVPAPAFHSQPIVALRAVLRS
                     TAFRGRLLECGGYSGRSAGRETWHGSGCRR"
BASE COUNT          876 a         1683 c         1482 g          779 t
ORIGIN      
        1 ttgcctcgaa tgggcaggtg ttcgcatccg agccggacgc caagacgtac gatgccggga
       61 aggtcatcca catcggcggc agcaacaacg gcgctacgga cgtccccact gccgcggcca
      121 aggtcatcga tctctgcacc aatcccccag catggcgtca gatcacaagt atgcacttcc
      181 cgcgccgcca acataacgcg acgattcttg cggatgggag tgtccttgtg acaggaggaa
      241 ccagcggccc cggcttcaat gatctctcac caggaaaacc tatccacgtc gccgagctgt
      301 gggatccggt ggcggatgca tggaccaagc ttgccgccga agatgtcgat cgctgttacc
      361 acgggacagc ggtgctgctg ccggacgcca cagtgctcag cgcaggtggc ggtgagttca
      421 ccgttggcag cgagccaaac gatcctcagg acaaccaccg caacgcacag attttccatc
      481 cgccctacct gttctacggc ccgcgcccga aaatcgcctc agcccccaag ggaatcgctt
      541 atggtgaaac attcccgctc cagatctcag gatcggacgt cggaaaggtc acctggatac
      601 ggctcccctc ggtgactcac gctgccgacc agagccagcg cttcgccttt cttgagttcc
      661 gccgcgacgg cgactggttg acgattaccg ctcccgaagg gccagagatc tgcgctccgg
      721 ggcactacat gctcttcgtc ctcagcaagg ccggagtgcc ctcgctggca cggatcgtgc
      781 ggatcggctc ccgcggtatg ctgtagcacc gcggtgagcc ccgctcacga tgacgagtcg
      841 ctccgtggtc gaccagccag gatgcggcac cgcgacaccg tgccgtctcg gccgcgacca
      901 tccgaaccgg ggttgagcct tggaggatcc gccggttcat agccgagcac tatcgtgtcc
      961 attatggggg gaccagcaaa tcacatcgat cgaaggctcg aagatctggt gccgggctct
     1021 gaggtttggg agatcgcgcg gcgcttccgg ctccaccgtt accggcactc cgatgcccag
     1081 catcagaccg ttgaggtcga gatgatgttc aatcgcgata tcggatggag ggtcgtcgcc
     1141 atggacgcgg cccgagacat ctccgcatca ggtccgccgc acccggatct gaacgttgcc
     1201 atcacccggg tgcgctggca ggaccttgac ggccaaggcg tgccgccgca acgatccaac
     1261 gacacctgag ggcagctgtt gccaccggcc aagcacgtta ccggaggtgt gcgggcgtat
     1321 gcggatgagc tcttacaacg cgctggtggc cgcggtgctg acaacgctgg tggtcctcgc
     1381 cggctgccag gcagttggag cgggatcgac ggccggtgac gcggctccgg tagtcctgtt
     1441 tccggcgttt caccttacga agcttcaggt cgaggtccac gatcaggttg tagcgcccga
     1501 gtgtcctcgt tctggcggct tcgaggactg gttccgcaac gaccatccga gtgcgacgtt
     1561 cagccaggtc tgccaggaca aattgctcac actccgctac gacgcctccc cgtccatacc
     1621 gatgccgcag cgcttcgccg atcagcacgg agtaaccgtc caggtcaaga actacgggag
     1681 gacggagagt gcgcccttct acgagccgct ctacaaagcg ctcgaatcca ccggctacat
     1741 acggaatcgg gacatccgca tcgccggcta cgactcgcgc ctcactcccg acataggcga
     1801 tttcctgcag cgcacgaaaa aattgatcga ggatacctac cgggacaatg gcaatcgtcc
     1861 agtgcatctt gtcggccact cgaacggacc gctgtacgtc caatacctgc tcacccacac
     1921 aacgcgcgcc tggcgtacga cctacgtcca cggcttcacc ccgctcgccg gcaactttcc
     1981 cggacagggg ctgctctacc cggtcctgtt caccgggctc aacatcgagg atttcgggta
     2041 cccgggcacc aaggacaacg ccgagagcag cgcccggctg tacaggagcg cgccctcgac
     2101 ctacctgagc gcggccgacc cgagaatttt cggtgaccgg gagacggtca tcgaagacgc
     2161 cgccaccggc cggtcctaca cgccgcggga ctacccgcgg ctgatcacgg atgcgaacct
     2221 ggactgggcg aaggacattg cggactatta catcggcttc gtcaagttca ccgacccagc
     2281 ctcgtttccc gacgtcgatg tttacgctga gaagggatcg ggtgtccaga ccgtcatcgg
     2341 ggcgcagctg gcgaacctga tccctggtca ggtcgttacc gcctccacca agttcttcac
     2401 tcgcgacggc gacggcaacc aggaggacat caccaacgac gccgttctcg cctggggggc
     2461 gttgcgctgt ttccacttca gtcttaccga caatccagga gtcgaccact tctcgctacc
     2521 cagcaatccg aacgtgctcc gtcggttgct ggtcgacctg gagcgcccac gtgagaggtg
     2581 cccataacgc ccactggcgc tgaatcctgt cccgacgcac cagatccctg ctcgcctcgg
     2641 cccggcgcaa ccaggactgg ccgtcccgcc gcgcccggca gcatcgaaca ccgtcagtag
     2701 cgacggtgaa gctggatctc gctccgtgtg agctccaagg tagacaagtc gcataacata
     2761 ctgggatgct ccgcgcatga cagtgcagat cgccattcgg cttgacgacg cgctcgccga
     2821 gaacgcgcgc gccgccgccg tagcggcggg aacgaacctg tcggagtggg tccgctccgc
     2881 catccggcaa caggctgcgc tggccaccgc gctgcgagcg cgggccgaag aggacagcgg
     2941 cccatcgatg tacaccgacg agcaggaaga agctctcctc gccgcgcgcc gaggccgcgc
     3001 ggtcaccgcg ttcaatcacc agtgagcgca tccgcatctc gttcgcctct ctcaccaggg
     3061 atccggttcg gacaggtgtg ggaatccccc gacgaaacca tcggctcgat gcgctacctc
     3121 gtggtgtcct ccgacgccta caacaccgcc ttcggcgacc gccgcgtcat cgctgtcgaa
     3181 gttgactccc atgccgtcta ccacggcgcc taccgcgaac ccatcactga cgccggcacc
     3241 gcccacctcg atcggctcat ctgggtcacc cgccgccaac tcgtcgagct cgtcgctgaa
     3301 ctccaccccg accgccacgc atccgtcacc ggcatcatcc gggaactgat cggcaacagc
     3361 tgaaccgcat actcgatcac cgacggcacc cagatccgtg ccaggtttcc cgaccagcac
     3421 tgcggccgga gtagccgccg cactcaagca gccgtccccg gaaggccgtg gagcgcagca
     3481 ccgcccgcag cgccacgatc ggttggctgt gaaacgccgg ggccggcaca acgagcacct
     3541 cgcttgagga gccgattcgg gcgatctcga tgaccgtgac ttcaccaacg cgctcgacga
     3601 gcgcagcgat ggggtctatc acaggcccgt cggcgccttg gctaagcgcc agcgcgatcg
     3661 catggcacag gccagtttcc agtgcatcgc ttgcgtcttg gacgccggac tcggtccaat
     3721 gcaccgatcc acggggcacc tcgtcgtggc gcaactcaag aagggcatcc gtcgccggcg
     3781 agcgcagacc gctgatgatc gtggtcgtcg agccgaacgc ggcgcccgcg acggggacgg
     3841 gtcgcacctc ggcgcccgca gcgaaaccgt tcgtcccgag ggggatgggc agcaccgcct
     3901 cggcctgaat gatcgtgttc agcgcgccgg ccccgcgccg cagcgggatg gctaccagag
     3961 ccttccggcc ggtgcgcggg tcgacgatac tggcgaggcg cacgcgcagg tactcggcca
     4021 aatgctcagg cgagctcacg gcacagccca gccgggccgg taccccctcc tcgccggctg
     4081 acccgcccct ctccagcatc ctccggagca gcggcccgac gaagcaggcg aatgcccgct
     4141 cggccgaggc cgggtatccc ggtaccccga ccaccggaac tgggcgctgg ccggtcagca
     4201 ctcccagcag gaccggatgc ccgggccgca tcgcgacacc gtgcacggcg atccggccga
     4261 ggcgccgcac gactgtggcg gtgtgatcgc cgcggccggc gctcgagccg gcgatcacca
     4321 acacggcatc ggcacgttgc gccgcctgcg ccacggcggc gccgagttgg tctgggcagt
     4381 caggtgcgat tggtaggcgc agagcttcgc cgcccacctc ttcgaccatc ccggccagca
     4441 tcagcgagtt cgtgtcgagt acctctcctg gcgtgagaac cgtgcccacc ggccgcacct
     4501 cgtcgccggt tggcagaacc gccacgaccg gctggcgccg gacgaggatg gtgtggtggc
     4561 ccgcagcagc cagcgctgcc acatcaacag gtcggatgcg atggcctgca ggtagcagga
     4621 gccgccccgc ctggatgtcc tcaccgatgg gtcgcacgtg acggccaggg gtgaccgaga
     4681 tatcgatctc ggcgccgccg tcatccgcca gccggacgtg ctcgcgcatg atcacagcgt
     4741 cgcgtctggg tggcatcagg tcgccggtgt cgacaaggtc gaactgcgtg ggtagtaacc
     4801 gtgcgggctg ctgtggtgtc
//
LOCUS       DASVXZ010000754         2347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_176013, whole genome shotgun sequence.
ACCESSION   DASVXZ010000754 DASVXZ010000000
VERSION     DASVXZ010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176013"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..721
                     /locus_tag="VF788_16080"
     CDS             <1..721
                     /locus_tag="VF788_16080"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8935668.1"
                     /translation="SELKLIVGELVARSLVHGGGTGSLRVWAERGYLVCEVRHAGHIS
                     DPPGDRLLADPRKPDGRGLLLVHHLSDLVQQHTCPQGTTTRVFLKLPPADEPPKDSGA
                     PAPAPPRTRSTSLAGQTPLPWQTFEALHAAERFGRYLPQDTAADMQRLTAANGERRLI
                     EPVLEALTAVEALARVVDRWRARLVRLARTRGAPWTDIGQSLGVSKQAAHERYGRARS
                     RRTGAPGLQRRVGPLPPIQGA"
     gene            complement(744..1412)
                     /locus_tag="VF788_16085"
     CDS             complement(744..1412)
                     /locus_tag="VF788_16085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935669.1"
                     /translation="MFVLGPVAAASPSENYGEYSLMTKRHAGQFYSEGNAAGQWSWTP
                     QGDESEVLWGDPSKWPPDSAEHFRHAGDWVLLDGWRSFGTYYVQRVNRELIGDGSCQN
                     LVPLPSEGGRQHYVQWKIPPRAYCLQAWGTITDQLSGKTMDFSHSQVWSPPGPCYNIY
                     LGGQTCIRQWESWSDNNGSPGSPIARKLEREVYLARGIGMGFTIDQTYPQPWHAELHS
                     YWVW"
     gene            1613..1840
                     /locus_tag="VF788_16090"
     CDS             1613..1840
                     /locus_tag="VF788_16090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935670.1"
                     /translation="MPPQTDESYYVGFGAAGQHIGLVAGGGPWGMTSPVAYWHVPDLE
                     VKLAEVTAAGATVKEPAHDPDGNVLGLLEDR"
     gene            1878..2288
                     /locus_tag="VF788_16095"
     CDS             1878..2288
                     /locus_tag="VF788_16095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010694760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935671.1"
                     /translation="MSMATRAGTQSPALHVADSHDLIRVHGARVNNLKDVNVEIPKRR
                     LTVFTGVSGSGKSSLVFDTIAAESQRLINETYSAFVQGFMPTLSRPDVDGAFDEVQAD
                     GAEVVQEPTDQPYGIRDCAFRDPAGNLIRIQELS"
BASE COUNT          424 a          760 c          757 g          406 t
ORIGIN      
        1 ctcggagctc aagctgatcg tcggcgagct ggtggcgcgc agcctcgttc acggcggcgg
       61 gaccggcagt ctgcgtgtct gggccgagcg gggttacctg gtctgcgagg tccgccatgc
      121 cggacatatc agtgatcctc ccggcgaccg cctactggct gatccaagaa aaccagacgg
      181 tcgtggcctg ttgctggtcc accatctctc cgatctggtc cagcagcaca cctgcccgca
      241 gggaactacc acgcgggttt ttctgaagct cccgcctgct gatgagccac cgaaagattc
      301 cggcgcaccg gctcctgcac cgccgcgcac ccggtccact tcgctagccg gccagacgcc
      361 tttgccatgg cagaccttcg aggcactgca tgccgctgag cgtttcggtc gctacctccc
      421 acaggacacc gccgctgaca tgcagcggct tactgcggcg aacggcgagc gacgccttat
      481 cgaaccggta ctcgaggcct tgactgcggt ggaggcactc gcccgggtgg tggatcggtg
      541 gcgggccagg ttggtgcggc tggcgcgcac acgtggtgca ccgtggactg acatcggtca
      601 gtcgctggga gtcagcaagc aggcagccca tgaaagatat gggcgagcac gcagtaggcg
      661 gactggtgcc ccggggttgc agcgccgcgt gggaccgctg ccgcccattc agggcgcctg
      721 atcgctacaa ccagacggag cagttaccag acccagtagg agtgcaattc ggcatgccat
      781 ggctgcggat aggtctgatc aatcgtgaag cccatcccga taccgcgagc gaggtacacc
      841 tcgcgctcca gcttgcgcgc aatcgggctg cctggggagc cgttgttgtc cgaccatgat
      901 tcccactggc ggatgcaggt ctgccctccg agatagatgt tgtagcaggg gccgggtggg
      961 gaccacacct gcgaatggga gaagtccatg gtcttgccgc tgagctgatc ggtgatggtg
     1021 ccccatgcct gcaggcagta ggcacggggt ggaatcttcc actgcacgta gtgctgacgg
     1081 ccgccctccg agggcagtgg aaccaggttt tggcacgacc cgtcgccgat gagctcgcgg
     1141 ttgacccgtt ggacgtagta agtgccgaag ctgcgccatc cgtcgagcag cacccagtcg
     1201 ccggcatgcc tgaaatgctc cgcactgtct ggtggccact tcgatggatc gccccacaac
     1261 acttccgact cgtcaccttg cggtgtccac gaccattggc cggccgcatt cccctcggag
     1321 tagaactgcc cggcatggcg cttggtcatc agggagtact cgccatagtt ctctgatggc
     1381 gacgcagcgg cgacgggacc gagcacgaac atcagtacca caagcaaaca gaagagaggc
     1441 caacaactaa ctcttcgtcg cactatccgg ccccttgcat cacgaaagtg tggtaactta
     1501 acgttaccat cgccgcaagg taactaaacg ttacgacggt cttcctctgt gccgcgtcag
     1561 gtaacgtttg cgcgtttgac cacctcacgc ggcattcgat cctctgctcg gcgtgccgcc
     1621 gcagaccgat gagtcctact acgttggttt cggggccgcg ggccagcaca tcgggttggt
     1681 ggcgggcggt ggaccgtggg gcatgacctc accggtggcc tactggcacg tgccggacct
     1741 tgaggtgaag ctggccgagg tgaccgccgc gggtgccacc gtgaaggagc ccgcgcacga
     1801 ccccgatggc aacgtcctcg ggctgcttga ggaccgatga gtgccggccc cccgctcgcc
     1861 taatagaggg agacacgatg agcatggcca cgagggcggg cacgcagtcg cctgcgctgc
     1921 acgttgccga cagtcacgat ctgatccgcg tgcacggcgc gcgcgtgaac aacctcaagg
     1981 acgtcaacgt cgagatcccg aagcgccggc tgacagtgtt caccggcgtc tccggctcgg
     2041 gcaagagctc tctggtgttc gacacgatcg ctgcggagtc gcagcggctg atcaacgaga
     2101 cctacagcgc cttcgtgcag ggcttcatgc ccacgctgtc gcggcccgac gtcgacggag
     2161 ccttcgacga ggtgcaggcg gacggcgccg aggtcgtcca ggagccgacc gaccagccct
     2221 acgggatccg cgactgtgcc ttccgcgatc ccgccggcaa cctgatccgc atccaggagc
     2281 tgagctgagc cctccgacga gcaaggccaa gaagacgact tcgaaggacg gcgcgatcca
     2341 ggtcgcc
//
LOCUS       DASVXZ010000755         2435 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1787610, whole genome shotgun sequence.
ACCESSION   DASVXZ010000755 DASVXZ010000000
VERSION     DASVXZ010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1787610"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            322..783
                     /locus_tag="VF788_16100"
     CDS             322..783
                     /locus_tag="VF788_16100"
                     /inference="COORDINATES: protein motif:HMM:NF025080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935672.1"
                     /translation="MQSSHAASAVDVVFDDPNLIADAGLVAVVALAEQVGLPELVTDL
                     VRITGAANSAGANPAAKVMSLPAGMVAGADSIEDVDRLRHAGNAAAFDQIRAPSTLGT
                     FLRAFTHGHVQQLNAVLRRTLIALAGQAPVLPGAEELVFVDLDSTHRQVYG"
     gene            944..1204
                     /locus_tag="VF788_16105"
     CDS             944..1204
                     /locus_tag="VF788_16105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935673.1"
                     /translation="MTTARAIAPTARFVVRGDSKFYTAEVVATAARHGAAVSLTTGSN
                     PSVNAAITTISQNGWTAIHYPHAFGDEQTGELVSDAEVAEVP"
     gene            1862..2347
                     /locus_tag="VF788_16110"
                     /pseudo
     CDS             1862..2347
                     /locus_tag="VF788_16110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003061014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
BASE COUNT          395 a          782 c          847 g          411 t
ORIGIN      
        1 gtggatggtc caagacccgg cgcgcggcgc cgatgtgctc aaccggttct gggcatcgct
       61 tccaggctga accgcgtagc gtatgaccgc gctggaattg gtggacgtgg ttcacgatgg
      121 ctggcccgtg aaccgattcc ctttacgcgc agcaggtctg tggggcgttg cattggtaga
      181 tgacagcctc gggcatgctg agctgatacg tcgccactgt cgagtacctg agcccggatc
      241 caccgattcg ttgcgtgcga ttggctggga agatgttctt gctgagggaa catcgggcca
      301 gttcgaggag acacccgcga gatgcaatct tctcacgccg cgagcgcagt cgacgtcgtg
      361 tttgatgacc cgaatttgat cgctgatgcc ggactggttg cggtggttgc gttggccgaa
      421 caggtcggcc tgcctgagct ggtcaccgat ctggtgagga ttacgggtgc ggccaacagt
      481 gccggggcga acccggcagc gaaggtgatg tcgctgccgg cggggatggt cgcgggggcg
      541 gactcgatcg aggacgtgga tcggctgcgg cacgccggaa acgccgccgc gttcgatcag
      601 atccgtgcgc cctcgacgct gggtacgttt ctgcgtgcat tcacccacgg gcacgtgcag
      661 cagttgaatg ccgtgctgcg ccggacgttg atcgccctcg ccgggcaggc ccctgtcctg
      721 cccggcgctg aggagctggt gttcgtggat ctggactcca ctcatcggca ggtctatggc
      781 taggccaagc agggcgcggc ggttggccgg ttgaagggca agaagaccct gcacccgttg
      841 atcgccaccg cctcgacgcc gatcgcccgg ccggtggtgc tcgcgatccg gatgcgcaag
      901 gggaaggccg ccgacgtgcg cggagcggct cctggccgaa gcgttgacca cagcgcgcgc
      961 catcgccccc accgcgcggt tcgttgtgcg tggcgactcc aagttctaca ccgccgaggt
     1021 ggtggcgacc gcggcccgtc acggcgcggc cgtgtcgctg accaccggtt ccaacccgtc
     1081 ggtgaacgcc gcgatcacca cgatcagcca gaacgggtgg acggcgatcc actacccgca
     1141 cgcgttcggg gacgaacaga ccggcgagct agtctccgat gccgaggtcg ccgaggttcc
     1201 ctaatgggca tgtaacagtc caagtcaccg ggcgtagcgg taggaacgcc ttccccgctc
     1261 cagcgtggca gcgcttcctg aagactggcg cctgccatgc gtgccgggtg cctgggtgga
     1321 gttcgggttc cgggctggac gtctttgaac gacccgtgac cggggagtcc ttggtcaaga
     1381 ccgacgccgg cccgggacct ggacctatca ggagaggagg tcacgccgtg cgttggtaag
     1441 cggcatcacc gggtcgactc cttcgaagtg cccagccatg agctttggtg tagagcggag
     1501 cgcccggggt tgccagcctg cctgcggcgg tgccaaccca cgcctacgta cgacctggag
     1561 ttcaactcgt caagtgagac cggcggagct ggtgctgctt cggttgcccc cggcgtggcg
     1621 tcgcgcctgc gaagcgtcgt ctatcgatca tgttcgtggt tcgagccgcc gacagggatc
     1681 acctctgagc cgcacgggag cctgccagct ccgacgcaga ccgagggccc tggcgatgag
     1741 ctggggtcac gaacggctgg tgggatgtcg ggccttggag ccctgccatt agggagacgc
     1801 gtaccccgcg caggctgcgg accagaacaa ccccagctcc ccgagggaaa ggaatgagat
     1861 cttgagcgtg tcgtgcggca tcgactgggc cgaagatcac catgacgtag ccctggtcga
     1921 tgcggacgga gcgttggtcg cccaacggcg catcagcgat gacgccatcg ggttcgggct
     1981 actcctgcag ctgctcgccg acgccggaga cagcgccgag gacccgatcc cggtggccat
     2041 cgagaccacc cgaggtctgc tggtggcctg cctgcgcgcc accggacgca cggtgtacgc
     2101 gatcaacccg aaggcggtgg accgctaccg cgatcgccat tcggccgccc ggaagaaatc
     2161 cgacgccggg gacgcgctcg tgctggccca catcctgcgc accgaccgaa ccgcgcaccg
     2221 gcccctgcca gccgattccg agctggccca ggcgatcgcg gtgctcgccc gcgcccagca
     2281 agacgcggtg tgggagcgca cctgcgcgca caacaaactg cgctcgctgc tgcgcgagta
     2341 ttaccctgac acgtgcgacg gagacgcgct ctcatgtcga tgagtgtgct gtgcgaagtc
     2401 tgagccgccg ctgccggttt ccgcggccga gccag
//
LOCUS       DASVXZ010000756         2097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1477184, whole genome shotgun sequence.
ACCESSION   DASVXZ010000756 DASVXZ010000000
VERSION     DASVXZ010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1477184"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            350..604
                     /locus_tag="VF788_16115"
     CDS             350..604
                     /locus_tag="VF788_16115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007617014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WhiB family transcriptional regulator"
                     /protein_id="HEX8935674.1"
                     /translation="MDWRHHAACRDEDPELFFPVGTSGPALLQITEAKAVCRRCPVNA
                     ECLNWALASGQDAGVWGGMSEDERRALKRRNARTGARNGV"
     gene            complement(691..>2097)
                     /locus_tag="VF788_16120"
     CDS             complement(691..>2097)
                     /locus_tag="VF788_16120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8935675.1"
                     /translation="EWQLLADLAFADLLMWVPLHVAGSPEGFLCVAHVRPTTGPTVHP
                     KDVVGARAPDNERVRLRQAILHGGILREEQPSWLLGVPVRREVVPVRLGERSIAVLGR
                     EANLAVPRVPSPLEIAYLGIATDLCQMLADGTFPDADTAPDRHGGPRAGDGLLRLDPH
                     GTVIYASPNALSAYHRMGHAAELRGEQLAPLTRKLISDPFEAAEVAQRIRSAIQGSPS
                     ARIEADAAGATMLYRALPLRPRGEPAGALVLVRDVTELRSRDRALLSKDATIREIHHR
                     VKNNLQTVAALLRLQSRRTANVEARQALQESVRRVASIAMVHETLSISLDERVDLDEV
                     VDKVLAMVAEVSGEESRVVVRREGAFGVLAAELATPLVMVLTELVQNALEHAFDPDRG
                     GEVVLRAERSAGSLEVTVSDDGRGLPPDFSLAQAERLGLQIVRTLVGSELRGSLDLQR
                     RQPRGTLAVLSLPLTIRR"
BASE COUNT          390 a          693 c          667 g          347 t
ORIGIN      
        1 ggctcgttaa gtccaatagg gctggctgcc aggaagctcg acgaccatgt cggttgctgg
       61 gtttactggc ggctcaccgc ggtgtgatca tacctcggtg accgagcgga gcgggcagtg
      121 gcgatcacgt ccgtgacgca cagctacgtc cgaatggtgc ttggaatcgg tttcgcatga
      181 ggttggtgga tcggtcgccc gggtgctccc gggtgaattg actcactgcg tccgtcgata
      241 cctcttgaca tcgcggatga ttgtgaaatc attcacaagc ccaaatgaca gacgacgacg
      301 gcgctgggac acagcagtcc accagcgcga tcgacgagga gcaagcacga tggactggcg
      361 ccaccacgcg gcctgccgag acgaggaccc cgagctgttc ttccctgtgg gaaccagcgg
      421 ccccgctcta ctgcagatta ccgaggcgaa ggccgtctgc cgccgctgtc cggtcaatgc
      481 tgagtgcctc aactgggcac tcgcctccgg acaagatgct ggcgtgtggg gcggtatgag
      541 cgaggacgag cgacgtgcct tgaagcggcg caatgctcgg accggggccc gtaacggcgt
      601 ctgatccgcg ttaaatagca caccaacgag aggcttggca ccgagtcggt gccaagcctc
      661 tcgtcattgg tcgacgagct tcgctgccat tcaacgtcgg atcgtcagcg gcaaactcag
      721 tactgccagg gtgccgcggg gttgccggcg ctgtaggtcc agggaccccc gtagttcgga
      781 acccacaaga gtgcggacga tctgtaaacc caaccgctcg gcttgggcaa gcgagaaatc
      841 tggtgggagc ccacggccat catcggaaac ggtcacctca agcgatccag cagaccgctc
      901 ggcgcggagc actacctcgc cgcctcggtc cggatcgaat gcgtgctcca gggcgttctg
      961 cacaagctcg gtgagcacca tcaccagcgg cgtggcgagc tccgcagcca gaaccccgaa
     1021 ggcgccctct ctccgtacga cgacccggct ctcttcccct gacacctcag cgaccatggc
     1081 gagcaccttg tccacgacct catcaaggtc cacccgctca tcaagggaga tcgacagtgt
     1141 ttcgtgcacc atggcgatgg aggctacgcg gcgcaccgat tcctgcagcg cctgacgagc
     1201 ctcaacgttc gccgtgcgcc gagactgcaa acgcagcagc gccgccaccg tctgcaggtt
     1261 gttcttcacg cggtggtgaa tctccctgat ggtggcgtcc ttggacagca gggcacggtc
     1321 acggctgcgc aactcggtga cgtcgcggac cagcaccagc gctccggccg gctctccacg
     1381 cggtcgcaac ggcagcgcgc ggtacaacat cgtggcacca gcggcatctg cttcgatgcg
     1441 tgcgctcggg cttccttgga tcgcgctacg gatccgctgg gcaacttccg cggcttcgaa
     1501 cggatcagag atcagcttac gagtcagtgg ggcaagctgc tcaccccgca actcggcagc
     1561 gtgccccatc cggtggtagg cggacagcgc gttgggactc gcgtagataa cagtcccgtg
     1621 gggatcgagc cggagcaagc cgtctcccgc ccggggtccg ccgtgccggt ccggcgcggt
     1681 atcggcgtcc ggaaaggtgc catcagccag catctggcac aggtcggtgg cgatccccag
     1741 gtaggcgatc tccagcgggc tgggcacccg gggtaccgcg aggttcgcct cccgccccag
     1801 aactgcgatc gatcgctccc ccaatcgaac cggcaccacc tcgcgacgca ccgggacgcc
     1861 gagcagccag ctgggctgct cctcacgcag gattccgccg tgcagtatcg cttgccgcag
     1921 ccgcacgcgc tcgttgtctg gggcgcgggc accaaccacg tctttgggat ggacggtagg
     1981 accagtggtg ggccggacat gagctacgca caggaacccc tccggcgatc cagcaacatg
     2041 cagcggtacc cacatcagca gatcggcgaa ggccagatca gcaagcaact gccactc
//
LOCUS       DASVXZ010000757         2917 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_893976, whole genome shotgun sequence.
ACCESSION   DASVXZ010000757 DASVXZ010000000
VERSION     DASVXZ010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_893976"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /locus_tag="VF788_16125"
     CDS             <1..371
                     /locus_tag="VF788_16125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005437746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEX8935676.1"
                     /translation="RGGQAIWMSDVDAAKIGVKDNDWIEAVNRNGVVVARAIVSHRMP
                     EGTVFMYHAQERTMGVPRTEKTGKRGGIHNALTRLMIKPTHLIGGYAQQSFALNYHGP
                     TGNQRDEVTTIRRRSQEVVY"
     gene            371..2041
                     /gene="narH"
                     /locus_tag="VF788_16130"
     CDS             371..2041
                     /gene="narH"
                     /locus_tag="VF788_16130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018681408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HEX8935677.1"
                     /translation="MKIMAQLAMVMNLDKCIGCHTCSVTCKQAWTNRGGVEYAWFNNV
                     ETRPGQGYPRQYQDQERWKGGWTLTKRGRLTLRSGSRVKRLLNIFANPDLPALADYYE
                     PWTYDYDNLLSAPPSDTTPTARPTSLITGEDTKVTWGANWDDDLGGGPEQIGRDPLLA
                     KVSDKVKLEFQQTFMFYLPRICEHCLNPSCAASCPSGAIYKRSEDGIVLVDQDRCRGW
                     RQCVTGCPYKKIYFNHKTGKAEKCTFCYPRVEVGIPTVCAETCVGRLRYIGVVFYDAD
                     AVLAAASVPDVKDLYPAQLGVFLNPHDPRVVAEAERAGISQEWIEAAQASPIYKLIVE
                     YQVALPLHPEYRTMPMVWYIPPLSPVVDVLASTGHDGEDAGNLFGAIDALRIPVEYLA
                     ELFTAGDVGPVRASLQRLAAMRAHMRRVNLGELVRPEIVESVRLSTSEIEAMYRLLAI
                     ARYEHRYVIPSAAGSDAHRLDALATGCSLDSDGGPGMTAFDVMDDKFHLTQQHADSNG
                     TAAPADKGRRVNLLNWDGKSTNGLFPVHTNGAANGAVADPAPVVESAS"
     gene            2038..2751
                     /gene="narJ"
                     /locus_tag="VF788_16135"
     CDS             2038..2751
                     /gene="narJ"
                     /locus_tag="VF788_16135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005447336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HEX8935678.1"
                     /translation="MSPAWLGRRKAEAHAGEDRRSTVSDDQTQLTQRMVWRIAALLLD
                     YPAQQTLDMLDELQAGAIALPAPAGPALGSFVDHLRGTPPIELAAYYVETFDLRRRNC
                     LHLSYYAFGDTRKRGMALLRFKHAYRTAGVKLGEHELPDHLAVVLEFAATVDPVAGRR
                     LLVEYRPVVELLRLSLQECQSPYAAVLEAVCATLPELNVADRRRVAELAAEGPPEEEV
                     GLEPFAMDPTLQEHMGGRR"
     gene            2748..>2917
                     /locus_tag="VF788_16140"
     CDS             2748..>2917
                     /locus_tag="VF788_16140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018681410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HEX8935679.1"
                     /translation="MTTLLWLTVPYVAFTSFVVGHIWRYRHDQFGWTTRSSQLYESRL
                     LRLGSPLFHFGLL"
BASE COUNT          514 a          959 c          985 g          459 t
ORIGIN      
        1 cccggggcgg gcaggccatc tggatgtccg atgtggatgc cgcgaagatc ggggtgaaag
       61 acaacgactg gattgaagcg gtcaaccgca acggtgtggt ggtggcgcgg gcgatcgtca
      121 gccaccggat gcccgagggc accgtgttca tgtaccacgc ccaggagcgc accatgggcg
      181 tgccgcgcac cgagaagacc ggcaagcgcg gcggcatcca caacgccctg acccggctga
      241 tgatcaagcc gacgcacctg atcggcggat acgcccagca gtcgttcgcg ctgaactacc
      301 acggccccac cggcaaccag cgcgacgagg tcaccaccat ccgccgccga agccaggagg
      361 tggtctactg atgaagatca tggcgcagct ggccatggtg atgaacctgg acaaatgcat
      421 cggctgccat acgtgcagcg tcacctgcaa gcaggcgtgg accaaccgag gcggcgtcga
      481 gtacgcgtgg ttcaacaacg tcgagacccg accgggtcag ggttatcccc ggcagtacca
      541 agaccaggag cgatggaagg gcggctggac gctcaccaaa cgcggccggc tgacgttgcg
      601 ctcgggctcg cgggtcaagc ggttgctgaa catcttcgcc aaccccgacc tgccggccct
      661 cgccgactac tacgaaccgt ggacctacga ctacgacaac ttgctctccg cccccccatc
      721 ggacaccacc ccgaccgcgc ggcccacctc gctgatcacc ggtgaggaca ccaaggtcac
      781 ctggggcgcc aactgggacg acgacctggg cggcggtccc gagcagatcg gccgggaccc
      841 gttgctggcc aaggtgtcgg acaaggtgaa gctggagttc cagcagacgt tcatgttcta
      901 cctgccgcgg atctgcgagc actgcctcaa cccgtcgtgc gcggcgtcct gcccgtccgg
      961 cgcgatctac aagcgcagcg aggacggcat cgtgctggtt gatcaggacc gctgtcgcgg
     1021 atggcggcag tgcgtcaccg ggtgcccgta caagaagatc tacttcaacc acaagaccgg
     1081 caaagccgag aagtgcacct tttgctaccc gcgggtggag gtaggcatcc ccaccgtctg
     1141 cgcggagacc tgtgtagggc ggctgcgcta catcggcgtg gtcttctacg acgcggacgc
     1201 ggtgctggcc gcggcgtcag ttcccgatgt gaaggacctc taccccgcgc agctgggcgt
     1261 gttcctcaac ccgcatgacc cgcgggtggt ggccgaggcg gagcgggccg gtatatccca
     1321 ggagtggatc gaggcggcgc aggcgtcccc gatctataag ttgatcgtgg aataccaggt
     1381 cgccctgccg ctgcacccgg agtaccgcac gatgccgatg gtctggtaca tcccgccgct
     1441 gtcccccgtg gtggacgtgt tggcgagcac cgggcacgac ggcgaggacg ccggcaacct
     1501 gttcggcgca atcgatgcgc tgcgcatccc ggtggagtac ctggccgagc ttttcaccgc
     1561 aggtgatgtc gggccggtgc gcgcctcatt gcagcggctg gccgcgatgc gcgcacacat
     1621 gcgccgggtc aacctcggag agctggtgcg accggagatc gttgagtcgg tgcgcctgag
     1681 cacatccgag atcgaggcga tgtaccggct gctggccatc gcgagatacg agcaccgcta
     1741 cgtcatcccc agcgcggccg gttcggacgc acaccggctg gatgccctag ccaccggatg
     1801 cagcctggac tccgacggcg ggccgggcat gaccgcgttc gacgtgatgg acgacaagtt
     1861 ccacctgacg cagcagcacg ccgacagcaa cggcaccgcg gcaccggcgg ataagggtcg
     1921 ccgggtcaac ctgctcaact gggatggcaa gagcaccaac ggtctgttcc cggtgcacac
     1981 caatggcgca gcgaatggtg cggtggccga ccctgcaccc gtagtggaga gcgcctcgtg
     2041 agcccggctt ggctgggccg ccgaaaagcc gaggcgcatg ccggcgaaga tcgtcgctca
     2101 actgtttccg atgatcaaac gcagctgacg cagcggatgg tgtggcggat cgccgcgctg
     2161 ctgctggact acccggcgca gcagaccctg gacatgctcg acgagctgca ggccggggcc
     2221 atcgcgctgc ccgcacccgc cggacccgca ctggggtcct ttgtggacca cctccgcggg
     2281 acaccgccga tcgagctggc cgcgtattac gtggagacct tcgacctgcg gcgtcgcaac
     2341 tgcctgcatc tgagctacta cgccttcggt gacacgcgca aacgcggcat ggcgctgctg
     2401 cggttcaaac acgcttaccg cacggctggt gtgaagctgg gcgaacacga actaccggac
     2461 catctggcag tggtgctgga gttcgccgcg accgtcgacc cggtcgccgg tcggcggctg
     2521 ctggtggagt accggccggt cgtggagttg ctgaggctgt ccctacagga gtgccagtcg
     2581 ccttatgcgg cggtgcttga ggcggtgtgc gccaccctgc ccgagctcaa cgtcgccgac
     2641 cggcgccgag tggccgagct ggccgcggag ggcccacccg aggaggaagt gggcctggag
     2701 ccgttcgcga tggatccgac gctccaggag cacatgggag gacgccggtg acgactctgt
     2761 tatggctgac ggtgccgtat gtggcattca cgtcgttcgt ggtcggccac atctggcgtt
     2821 accggcacga tcaattcggt tggaccaccc gatcctccca gctctacgag agccggctgc
     2881 tccggctggg cagcccgttg ttccacttcg ggctgct
//
LOCUS       DASVXZ010000758         4937 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_176742, whole genome shotgun sequence.
ACCESSION   DASVXZ010000758 DASVXZ010000000
VERSION     DASVXZ010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4937
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176742"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="VF788_16145"
     CDS             <1..399
                     /locus_tag="VF788_16145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935680.1"
                     /translation="PVPVSGDWKTMVGLQRGDEVMAAPVYLRADPEIDAPAIPALPQR
                     QAAFVRNTTLLLREQHPGPAWPGLVGYGGLASMAVLWSALFAFVAHRLSGAGGAVGAG
                     PALDRASDDRDARPQRHDSLAHPRSRPNSS"
     gene            475..2139
                     /locus_tag="VF788_16150"
     CDS             475..2139
                     /locus_tag="VF788_16150"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003073773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX8935681.1"
                     /translation="MRSQPVPPPEQDVPAPSPSHGSAQPADHVDVLIVGAGLSGIGAA
                     CHLRRRCPGKTFAILEARGTIGGTWDLFRYPGVRSDSDMFTLGYSFRPWTDPQAIADG
                     DSIRRYILQTAHEHGVDQYIRFHHRVLSAEWSSEHARWTVEAHRTDTAESVVLTCGFL
                     FACSGYYRYDQGYTPQLPGIDRFTGRIVHPQQWPSDFDYTGKKVVVVGSGATAVTLVP
                     AMAEKAAHVTMLQRSPSYVVSLPSRDGVTDALRRWLPPRVAYPLARWKNALIATLFFQ
                     LSRRAPGVMKALVRKGATAQLPAGYDVDTHFGPRYNPWDQRLCLVPDGDLFQAIRNGR
                     ASIVTDHIETFTEHGIRLASGTDLEADIVVTATGLNLLAIGGMSLRVDGADVELSDTV
                     AYKGMMLSGVPNFALTLGYTNVSWTLKADLVSQYVCRLLNHMDQRGYQICTPIAPDTL
                     QRQPIIDLQSGYVLRSVNELPKQGPATPWRLHQNYPRDALFMRRGPLQDAAVQFSRAP
                     TAAPATGSPLPDLININTQESFSCADTSSLAAPPSSLAPPAASARR"
     gene            2067..2942
                     /locus_tag="VF788_16155"
     CDS             2067..2942
                     /locus_tag="VF788_16155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020416806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935682.1"
                     /translation="MRRYVFAGGTAVVTGAASGIGEALAHALARRGSHLVLLDRDAER
                     LSGVAAAIRDANPGLRVETRVVDLADRDTTMDVAHAVLREHPRIRLLVNNAGVALGGR
                     FDQVTLEEFDWVIDVNFRATVWLTHMLLPALKAESGSHLVNVSSLFGLIAPAGQAAYA
                     ASKFAVRGFTEALRQELADNGICVTSVHPGGVRTRIAESARVGSGVSRQEEEDSRAEF
                     ATLLTIDPPHAANVIIEGLERRRGRVLIGWSAKIPDLLARLLPAAYGKVLTIALRARR
                     RTSAGAADRRPQPVT"
     gene            2957..3862
                     /locus_tag="VF788_16160"
     CDS             2957..3862
                     /locus_tag="VF788_16160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8935683.1"
                     /translation="MSTMPSPVTSRITVRGRQVRYRVDGAGPPVILLHGISRSLEDWT
                     EQHELLQARHRVYSMNLPGYGWSGPLAEPYTLPALARFVAEFLDAVQIAEPVHLVGNS
                     LGGAVAMQLAVDAPDRIASLALVNSAGFGREVTIDLRLLAIRPLGRLLLRPSRYGARR
                     VERRLFHDPTFVTQARVEHAFALAQRPHAAKVLLATVRSLGTIRGVRPQWRKTLLRSL
                     AELEMPTLIVWGDRDLILPAAHLNAARTHLPRAQTHLFPNTGHMPHIERADALRQLLE
                     EFWENANRDRPAPRQDIAARERSEG"
BASE COUNT          844 a         1679 c         1562 g          852 t
ORIGIN      
        1 cccgtgcccg tcagcggtga ctggaagacc atggtgggcc tgcagcgagg cgatgaggtc
       61 atggccgccc cggtgtacct acgggccgat ccagagatcg acgcacccgc gattccggcc
      121 ttgccgcagc ggcaggctgc gttcgtccgc aacaccacgt tgttgcttcg cgagcaacac
      181 ccgggaccag cttggccagg cctggttggc tacggcgggc tggcctccat ggccgtgttg
      241 tggagtgccc tgttcgcctt cgtcgcccac cggctttccg gcgccggggg cgctgtcggt
      301 gccggacctg cgctcgacag ggctagtgat gatcgggacg cgcggccgca gcggcacgac
      361 tcgctggctc acccccgaag ccgaccaaat tcctcatgac tggatgcacc cggcagctgt
      421 cggcgccaat ccactaacaa gccgccctca aggccttcac tcgggagatt tagcatgcgc
      481 tctcagccgg tgcccccacc tgagcaggac gtgcctgctc cctcgcccag ccacggatcg
      541 gcgcaacctg cggatcacgt cgacgtgctc atcgtcgggg ccggactgtc cgggatcggc
      601 gccgcctgcc acctgcggcg gcgctgtcca ggtaagacgt tcgccatcct ggaagcccgc
      661 ggcacgattg ggggcacgtg ggacctgttt cgttatccag gtgtccgctc ggactccgac
      721 atgttcacgc tcggctactc gtttcgccca tggacggatc cacaagccat cgctgacggc
      781 gactcgatcc gccggtacat cctgcagacc gcgcacgagc acggggtgga ccagtacatc
      841 cgtttccatc accgggtact gagcgccgaa tggtccagcg agcacgctcg gtggaccgtc
      901 gaggcacatc gaacggacac cgccgagtcg gtggtgctga cgtgcggatt tctgttcgcc
      961 tgctcgggct actaccgcta cgaccagggc tataccccgc agttgccggg cattgaccgc
     1021 ttcaccggcc gcatcgtgca cccacagcaa tggcccagcg actttgacta caccggcaaa
     1081 aaggtggttg tcgtcggcag cggcgccacc gcggtgacct tggttccggc gatggccgag
     1141 aaggccgcgc acgtgaccat gctgcagcgc tcccctagtt atgtggtgtc gctgccgtcg
     1201 cgggacggtg tcaccgacgc tttgcgccgc tggctgccac cacgagtggc ctatcctctg
     1261 gctcgatgga aaaacgccct catcgccacg ttgtttttcc agctcagccg tcgcgctcct
     1321 ggtgtgatga aagccttggt acgcaagggc gccactgcgc agctgcccgc gggctacgac
     1381 gtcgacacgc acttcgggcc gcgctacaac ccgtgggatc aacggctgtg cctggtgccc
     1441 gatggtgacc tgttccaggc gatccgtaac ggccgcgcct cgatcgtcac cgatcacatc
     1501 gagacgttca ccgagcacgg aatccggcta gcctccggga ccgatctcga agccgacatc
     1561 gtggtcaccg ccaccgggct caacttgctc gcgatcggtg gcatgagctt gcgcgtcgac
     1621 ggcgccgacg tcgagctcag cgacaccgtg gcctacaagg gcatgatgct ttctggcgtg
     1681 ccgaacttcg ccctgaccct cggctacacc aatgtctcgt ggacgctgaa ggctgatctg
     1741 gtcagccagt acgtctgccg gttgctcaac cacatggatc agcgtggcta tcagatctgc
     1801 acgccgatag cgccagacac cctgcagcgc cagccgatca tcgatctgca gtccggctac
     1861 gtgctgcgca gtgtgaacga gctacccaag caggggccgg ctaccccgtg gcggctgcac
     1921 cagaactatc cgcgggacgc gctgttcatg cgccgcgggc cgctgcagga tgcggccgtg
     1981 cagttcagcc gcgcgccaac ggcagcaccc gccacgggct ccccactgcc tgacctcatc
     2041 aacatcaaca ctcaggagag cttttcatgc gcagatacgt cttcgctggc ggcaccgccg
     2101 tcgtcactgg cgccgccagc ggcatcggcg aggcgctagc gcacgcgctg gcccggcgcg
     2161 gcagccatct ggtcctcctc gaccgggacg ccgagcgact ctcgggcgtg gccgcagcta
     2221 tccgggacgc caaccccggt ctgcgcgtgg agacccgcgt ggtggatctc gcggaccggg
     2281 atacgaccat ggacgtcgcc catgcggtgt tgcgagagca tccgcggatc cggttgctgg
     2341 tgaacaacgc cggtgtggcg ctgggtgggc ggttcgacca agtgaccctg gaggagttcg
     2401 actgggtcat tgacgttaac ttccgggcca cggtgtggct gacccatatg ctgttgcccg
     2461 cgttgaaggc cgaatccggc tcgcacctgg tcaatgtctc cagcctgttc gggctcatcg
     2521 cacccgccgg ccaagccgcc tatgcggcca gcaagttcgc tgtgcgcggg ttcaccgagg
     2581 cgctgcgcca ggagctggcg gacaacggga tttgcgtgac gtcggtccat ccgggcggcg
     2641 ttcgtactcg catcgccgag tcggcgcgcg tcggtagtgg cgtgtcgcgt caggaggagg
     2701 aagacagccg ggcagagttc gccaccctgc tgaccatcga tcccccccat gcggccaacg
     2761 tcatcatcga ggggctcgag cgccgccgcg ggcgcgtgct catcgggtgg tcggcaaaga
     2821 tcccggacct gctggcccga ctgctgccag ctgcctacgg aaaagtcctc acgattgcgc
     2881 ttcgtgcccg gagacgaacg tcggccggtg cagcagaccg ccgcccgcag ccggtgacgt
     2941 gagcgaggca gagcgcatga gcacgatgcc gtcgccggtg acatcccgaa ttaccgttcg
     3001 tggccggcaa gtccggtacc gagtggatgg agcgggcccc ccggtgatcc tgctgcacgg
     3061 aatcagccgc agcctcgaag actggaccga acagcatgaa ctgctgcaag cccggcaccg
     3121 ggtgtacagc atgaacctgc ccggctacgg ctggtccgga ccgctcgctg agccctacac
     3181 gctgccggcc ctggcccgct ttgtggcgga gttcctcgac gcggtgcaga tcgctgaacc
     3241 ggtgcacctt gtcggcaact cccttggcgg cgcagtcgcc atgcaactgg ccgtcgacgc
     3301 cccggaccgg atcgcgagcc tggctctggt gaacagcgcg ggcttcggac gcgaagtgac
     3361 catcgacctg cgactactcg ccatccgccc gctgggccgg ctgctgctac gacccagtcg
     3421 ttacggcgca cgacgagtcg agcgcagact gtttcacgat cccacgttcg tcacccaggc
     3481 acgcgtcgag cacgccttcg ctctcgcgca acgaccacat gccgcaaagg tgttgctcgc
     3541 aaccgtccgc agcctgggca cgatccgcgg tgtccgtccc caatggcgga aaacgctgtt
     3601 acgctccctc gctgagctgg agatgccgac cctcatcgta tggggcgacc gcgacctcat
     3661 cctgcctgcc gcccacctca acgcggcccg cacacacctg ccgcgcgcac agactcacct
     3721 atttcccaac accggccaca tgccgcacat cgagcgcgct gacgcgttgc gccaactcct
     3781 cgaggagttc tgggaaaatg ccaaccgtga ccggcccgcg ccacgccagg acatcgcggc
     3841 gcgggaacgc tccgaaggct gaccccctac cgtccccgcg tgccggcata gacacgcacc
     3901 cgcagagcac cactgggaag agtttcgacg acactcgcac catcatggtg ccacgcccca
     3961 actggcaaga tcgcaaatac cacgtctgtg agcagggaag tgctctggtg cactgtcggt
     4021 gagattctga ccgtgagtgt ccgtggttcc ccgtgagtcc ccgagggaac gggcacgcga
     4081 gaggcacgag acaagatcgc cggacgtgca aggtttggcg tcctgtcgcg ggacacgcga
     4141 gtgcctaagt gggtatcccg tcgcgtcggc gggctccttc tgaagcaggc caggcgcggg
     4201 gtcgaggtgg agcatccgac ggctgaacga cccccgtgcc tggcctgcta caccctcggc
     4261 gccgatggga cgtgataccc gcgcccgcag ggatccctag accgtccagt accggcgccg
     4321 aggctgtcag gatgcccgat gcccaggccg agtcatatat tcctctcgtg gctggctttc
     4381 cggctgccgc aaccgtaggt ttatggcgcc ctgaagaggg gaaccccggt cagacagtta
     4441 ccgacaccat cttggtctgt agcgccggtg tccgagctga agggaccgtg tggacgcaat
     4501 aagcgaacaa acgaatcatt ggtgtcggta accaggaacc cgatcccgcc acggttggga
     4561 acctaaggcc gacgataaga tgcggaacaa tacggaaagc ccgtcccatc gctcggaccg
     4621 gttagatgcc gggatttccc aggagaagaa tatcgatccg gagagcccga tcatgccttc
     4681 tggtaaaccc aggtggctga cgtatctcag gctgccgtca ggaaggttta gtgtgggcca
     4741 cttgttgcct acggtgaggg gtcgtgcttg ggtcatgaga gccgctcgct ggctcgcctc
     4801 acctgcttac ggcctcagtg tccgccggtt tcccgttttc gccagagctg atcacttggg
     4861 gtggtgcggt ggtatctgca ccaccgattt tgcaaccagt aagagctgat aagcctagcc
     4921 cggagagccg ctccgac
//
LOCUS       DASVXZ010000759         2646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_355933, whole genome shotgun sequence.
ACCESSION   DASVXZ010000759 DASVXZ010000000
VERSION     DASVXZ010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355933"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..271)
                     /locus_tag="VF788_16165"
     CDS             complement(116..271)
                     /locus_tag="VF788_16165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935684.1"
                     /translation="MLADKLLEHDNVYVKDVFVKFNDGQVDWRLAVHTAGDNERLCCL
                     MRSGCIY"
     gene            complement(432..815)
                     /locus_tag="VF788_16170"
                     /pseudo
     CDS             complement(432..815)
                     /locus_tag="VF788_16170"
                     /inference="COORDINATES: protein motif:HMM:NF025126.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(850..1839)
                     /locus_tag="VF788_16175"
     CDS             complement(850..1839)
                     /locus_tag="VF788_16175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935685.1"
                     /translation="MKALDLLLAAVKDKGLVKAGGKQRTDSTHVLAAVRDLNRLELAG
                     ESVRAVLEGLAAAAPDWLADAIDVSGWAKRYTARVDSWRLPTSETARAELARVYGIDG
                     FALLTAVYSADAPSWLRELPAVEVLRVVLMQNYTRTVTGGREVITRREADTDGLPPGR
                     LRVSSPSDTAARWGVKRDTFWNGYKVHITETCASPSTDSCATSTGSAELPATGIGQQQ
                     SAAGTRPELPNLITNVATTDATVPDVATTEPIHRHLAARDLLPSEHYVDSGYPSAELI
                     SRSATDFGIALITPVLGDHSPQARAGTGFDRTHFTIDFDRQQATCPQGQTSTS"
     gene            complement(1904..1993)
                     /locus_tag="VF788_16180"
                     /pseudo
     CDS             complement(1904..1993)
                     /locus_tag="VF788_16180"
                     /inference="COORDINATES: protein motif:HMM:NF017416.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1974..2207)
                     /locus_tag="VF788_16185"
     CDS             complement(1974..2207)
                     /locus_tag="VF788_16185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935686.1"
                     /translation="MSIRPQPWPEIPESTVRAARAAAAKGVYPLAMRIRDELGELFAD
                     EQFREAFGVRGKAGVVTGAVGAGHRVADGRGSD"
BASE COUNT          479 a          871 c          845 g          451 t
ORIGIN      
        1 ttttcgccag atttatcttg gcgcaggact gaccacgtcg agttgagaga ttgccaatgt
       61 atacgcccct ttctgcagac caatagtttg acgcctctgc ctcaagagtg gcttatcaat
      121 agatgcaacc cgaacgcatg agacaacata ggcgctcgtt atctcccgcc gtgtgcactg
      181 cgagacgcca gtcgacttgg ccgtcgttga acttgacgaa cacgtccttg acatagacgt
      241 tgtcgtgctc caggagctta tcagccagca acccagcctc ttcggtgctg agcgaaagag
      301 cgacgagaac aaaagttggc gacactctgg aacacacgct gcacaatcac gagctcgcgc
      361 cagagcggcg gcgaaggact cgcgatcagc caccgttttg gccactgcgg tgaccctgct
      421 ggttaattcg atcaggcggc gagggatagt tcgaggcggg cgaggtgggt ggtgcgggtc
      481 cggtcgaggg ggtgggcgtt ccaccaggag ttcaggcgga tcaggttgag cgcgatggcg
      541 gagaagacgt gttcgaggtg agtcttggcc aggcctcggt agcgggtatg tcgcaggccg
      601 gtgacggcga tggcttggcg gagggtgccc tcgacaccgg cgcgcagcgc gtagtcggcc
      661 tgccaatcgg tggtggtttg ccgggcgcgg gcggcgcgtt gagcatcatg gatctggcgg
      721 gggtgcacgg tgagctgacg gcgttgtgtc tgggaggtgg tgcactgatc ccggaccgga
      781 cacgggcggc aggtggcggt cggaaaggtg atggatgatc gtgtcggtgc cccgctgggt
      841 ggccgggtgt caggatgtac tggtctggcc ttgggggcag gtggcctgtt ggcggtcgaa
      901 gtcgatggtg aagtgagtgc ggtcgaatcc ggtgccggcc ctggcctgag gtgagtggtc
      961 ccccagcaca ggggtgatca acgcgatgcc gaaatcggtc gcggaccggc tgatcagctc
     1021 ggctgagggg tagccggaat cgacataatg ttcgctgggc agcaagtcac gggcggcgag
     1081 gtggcggtgg atcggctcgg tcgtcgccac gtccgggacg gtcgcatccg tggtcgccac
     1141 gttcgtgatc aggttgggca gctcgggtcg ggtccctgct gcggactgct gttgcccgat
     1201 gccggtggcg gggagctcgg cgctgccggt actggtggcg caggagtcgg tgctggggct
     1261 tgcgcaggtc tcagtgatat gaaccttgta gccattccag aacgtgtcac gtttgacgcc
     1321 ccaccgggca gcggtgtcag acggggagct cacccgcagc ctgcccggcg ggagaccgtc
     1381 tgtatccgcc tcccgccgcg tgatcacctc ccgcccaccg gtcactgtcc tggtgtagtt
     1441 ctgcatcagc accacccgca agacctccac cgcgggcagc tcacgcaacc agctcggggc
     1501 atcagctgaa tagaccgcag tcagcagcgc gaaaccatcg atgccgtaga cccgtgccag
     1561 ctcggcgcgg gcggtctcgg aggtaggcaa ccgccaggaa tcaactcggg cggtgtaccg
     1621 cttggcccat ccggacacgt cgatggcgtc ggccagccag tccggtgcgg cggcggcgag
     1681 cccctccagc accgcccgca ccgactcacc ggccagctcc agccggttca aatcccgcac
     1741 cgccgccagc acatgcgtgg aatcggtgcg ctgtttcccg ccggctttca ccagcccctt
     1801 gtccttcacc gccgccagca gcagatccag ggccttcaca ctcgatccca tgctcaacca
     1861 gacgggcccg gaactcgctc agcaccgagg cgtcaaaccc cggatcatcc agctccaacc
     1921 ccaacgcgta tttccagtcc atcccaaacc gcacccgcgc cgccgccgcc cggtcagtca
     1981 gatcctcggc catctgcaac acggtgacca gcgccaaccg ccccggtgac caccccggcc
     2041 ttaccccgca ctccgaacgc ctcgcggaac tgctcatcag cgaacaactc acccagctcg
     2101 tcacgaatcc gcatcgccag cggatacaca cccttggcgg ccgccgcccg cgctgcccgc
     2161 acggtcgatt ccgggatctc cggccacggc tgcggtcgta tcgacaccac accctccatc
     2221 ctgcagccgg agacagacac aagccgacca cagaacgatc atgcacatcc agaagatcca
     2281 caggtggagc cacaccgaca ctaccctcag cacagattcg aatcaaccag cagggtcgac
     2341 ctcggggcca aaacgtgctc aggaacccgc ccccgaactc ggccctatcg tcaagcgtca
     2401 agctcgtcgc ggataaccgg ctgcaacgca tcccagacca cggggaccgt gctcatctcg
     2461 accttctgtc gccccctgag caggcatgtc actacgctat cggccgtgta ctccccaggt
     2521 aggcagggct ggagtcccgg cgcgaccttg tcgttagccc tgagctggcc ggcaacggac
     2581 ccgagcggga ttcgaagcgc accgttcggt ctccaagggc aacgactttc gcccctgacc
     2641 gcgact
//
LOCUS       DASVXZ010000760         4983 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_86796, whole genome shotgun sequence.
ACCESSION   DASVXZ010000760 DASVXZ010000000
VERSION     DASVXZ010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4983
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86796"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            363..2087
                     /locus_tag="VF788_16190"
     CDS             363..2087
                     /locus_tag="VF788_16190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8935687.1"
                     /translation="MSLVLIIVSPFVDTAAIMLFKILVDKVLTPRDFSAFLPVAGAFI
                     GITLLVGALGFLGAYLGAWIGENFLHRMRTRVFAHLHTLSVSFFDRRRLGDILSRLTG
                     DVAAIEAVVLSGVIGLISNVLKIFVFAGVLFYLDWRLALASLIAVPVFWLAARTFARR
                     IKIASREVRRRAGSISVVAEESLGNATLIQAYGREGVEVDRFAAQSMGSVNAELAATR
                     LGAMFSPLVDLVQVLGILTILGVGIWELTAGRITLGGLLAFLVFLSQLYGPVQGLGSL
                     STSLFAATAAAERIIELLDEQPTVTTPVYPVPLNRARGQLQLDQVSFAYPDTETEVLR
                     NVGFTAQPGQTTAIVGASGAGKTTLLKLLLRFYDPTSGRIALDGHDLRELDPNALRAN
                     IAIVLQETLLLDGSIAENILAGRPEATEDQLITAAKAADAHEFIMALPEGYDTRVGQR
                     GRLLSGGQRQRIAIARAMIRDAPILLLDEPTTSLDADAAQRILTPLRRLITGRTTIII
                     SHNLLTVTDADQIIYIEHGRITETGTHDELLTNNHQYAHLYHLHHPDDPARGPGQNGR
                     FAGTGASS"
     gene            2165..2872
                     /locus_tag="VF788_16195"
     CDS             2165..2872
                     /locus_tag="VF788_16195"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010697065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX8935688.1"
                     /translation="MENRLQNVTFGSNGATAHGYLALPAGGSGPGVVVIQEWWGLTSH
                     IAEVANRLAEAGFVALAPDLFGGVTTHDADEAGKLMQDLPVDQAARDLGGAVDYLLHH
                     DAVTSSTVGAVGFCMGGGFVLVLAAQQGDKIGAAVAFYAVLGEDYPSFENLSAPVLGH
                     FGEQDAFQSTEAVQELAATIERQTGRRPDFHFYPAGHAFFNDENLLGTYDPEQAAEAW
                     NATVDFLREHLGVPQAG"
     gene            2885..3640
                     /locus_tag="VF788_16200"
     CDS             2885..3640
                     /locus_tag="VF788_16200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935689.1"
                     /translation="MVRRLAGWVLVVFGVLGAGLTGMSIAQAATYSDYLPAAVAAAIF
                     AVITLGCLGGGWLLLRQRSTRRPPTMEWQPCPGQGWLPQQAWAELPDVQPRRPRLGPR
                     PPTPVGGVPPDRLLRRLWLVRAELAFDQSGGMRFGSLIGWMLLLAFEAGAALLVGAFL
                     ATGDLTAPDRTAVAPVLGCLVIAVVVSGERASRNPRRHVELRRMQRELETAYAATPGT
                     IPAGATVRLGDPTPRYDPGRAPQERDRSNAVRP"
     gene            3624..4154
                     /locus_tag="VF788_16205"
     CDS             3624..4154
                     /locus_tag="VF788_16205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935690.1"
                     /translation="MPYDHEADRELVQQTFSREWGEPVCAVQIREFVPSFKVPGRQAN
                     GSPSSQRRVRRFFISVAQTLHFLVALAAGVFLDGNLNGPSIPTYRGKVQGSEGSSAVQ
                     FAELLRGTDFWLVVSASRLAVVQAGSSPPVIVMWSSVGPDRPQRDGDAAALLWPDGSR
                     VSLVLDDAESQRLVAV"
     gene            complement(4133..4756)
                     /locus_tag="VF788_16210"
     CDS             complement(4133..4756)
                     /locus_tag="VF788_16210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935691.1"
                     /translation="MTGYTVELPENFIELPAAAATAQIQHELEERFGLPVGDTSAAKV
                     AESLTVLGLIAADSGAQHTSIGFFRSPDDPQRPVSVVLTAARMDSDHDDPSAVIAGLR
                     EVYAADPATGTEILQLPRGPALATIREEPAMIEIDGVGPLPLLQRQVLAWIPDPAGSA
                     VAVIGVASNCWQDWAHICDLALDVFESVFWDPAGGEKLTNDQTATSR"
     gene            complement(4753..>4983)
                     /locus_tag="VF788_16215"
     CDS             complement(4753..>4983)
                     /locus_tag="VF788_16215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935692.1"
                     /translation="REGQYIGTKGLNMVAEKLTKEGIIDPLSVGGRALDAGIKGGKSI
                     AGEVYHQLTGPGDPPPSASQTFSSRVTARGGV"
BASE COUNT          774 a         1627 c         1676 g          906 t
ORIGIN      
        1 actacgatgg ttacaactac ggcggctacg cctatgacgg ccacttccgg ctgctcgggc
       61 tcatcggata gccggtagat cgtcggcggt ggcctggaat tccctcagcg gagcaaaggc
      121 caccgcctcg ccgtgttcaa gaatcgccgc ggcctcagct catcgggtca gcgtcgcttc
      181 tgcccagagt agagtcgaca gccggagcga gagagggggc agcagtgagg gagatgctgc
      241 ggtcgttgat gcgcccggcg tcggctgatg gcggcctggt ggaggcagcg cccgcagcga
      301 gcctacgaga ggtcttccgt cgattttggc ctgatgctcg gccgttctgg cggtggctct
      361 gggtgagcct ggtattgatc atcgtgtcgc cattcgtgga cacggccgcg atcatgctgt
      421 tcaagatact agtcgacaag gtcctgactc cgcgggattt ctctgccttc ctgccggtgg
      481 ccggggcgtt cataggcatc acgctgctgg tcggcgcgct gggtttcctg ggcgcgtatc
      541 taggggcgtg gatcggcgag aacttcctgc atcgcatgcg cacccgggtg ttcgcgcatc
      601 tgcatacctt atcggtgagc ttcttcgacc gccgccgcct gggtgacatc ctgtcgaggc
      661 tgaccggcga tgtcgctgcg attgaagccg tggtgctctc cggggtcatc gggctgatct
      721 ccaacgtgtt gaagatcttc gtgttcgccg gggtgctgtt ctacctggac tggcgcctgg
      781 cgttggcgtc gctgatcgcg gtgccggtgt tctggttggc cgcccggacc ttcgcccgcc
      841 gcatcaagat cgcctctcgg gaggtccgcc gccgggccgg gtcgatcagc gtggttgccg
      901 aggaaagtct gggcaacgcc accctgatcc aggcctacgg tcgtgagggt gtcgaggtcg
      961 accgcttcgc cgcgcaaagc atgggcagcg tgaacgccga actggctgct acccggctgg
     1021 gtgcgatgtt ctccccgctg gtggatctgg tccaggtgct gggcatcctt accatcctcg
     1081 gggtgggcat ctgggagctg accgccgggc gcatcaccct gggtggatta ctggcgttcc
     1141 tggtgttcct gtcccagctg tacgggcccg tgcaaggtct gggttcgctg tcgacctccc
     1201 tgttcgcggc caccgcggcc gccgagcgaa tcatcgaact gctcgacgag caaccgacgg
     1261 tgactacgcc ggtgtacccc gtcccgctga accgggcccg tggacagcta cagctggatc
     1321 aggtcagctt cgcctatccg gataccgaaa ccgaggttct gagaaacgtc ggtttcaccg
     1381 cccaaccggg gcagaccacc gccattgtcg gcgccagcgg cgcgggcaaa accaccctgc
     1441 tcaaactgct gttgcgcttt tatgacccca ccagcgggcg gatcgccctc gacggtcatg
     1501 acctccgcga gctcgatccc aacgccttac gcgctaacat cgccatcgtc ttgcaggaaa
     1561 ctctgctgct ggatggctcg atcgccgaga acatcctcgc gggccgtccc gaagccaccg
     1621 aggaccaact catcacggcc gcgaaagccg ccgacgcgca cgaattcatc atggcgttac
     1681 ctgagggcta tgacactcgg gtgggtcaac gtggccgatt gctctccggc gggcagcgcc
     1741 agcgcatcgc gatcgctcgg gcgatgattc gggatgcccc catcctgctg ctagacgagc
     1801 ccaccaccag cctggatgcc gacgcggcgc agcgcatcct caccccgcta cgccggctca
     1861 tcaccgggcg caccaccatc atcatttccc acaacctgct taccgtcacc gacgccgacc
     1921 agatcatcta catcgaacac ggccgtatca ccgaaaccgg cacgcacgac gagctcttga
     1981 cgaacaacca ccagtacgcc cacctctatc acctccacca ccccgatgat ccggcgcgag
     2041 gtcccggcca gaacggcaga ttcgccggca caggagcatc gtcctaaccg gcgcaccgaa
     2101 acgggtcgcc acctgctcta gccctcaggg ggttgaacga ggcgggtgtg gtgagatccc
     2161 gagcatggag aaccggctgc agaacgtgac gtttgggtct aatggtgcta ccgcgcacgg
     2221 gtaccttgcg ctgcctgcgg ggggcagcgg tcctggcgtc gtggtgatcc aggagtggtg
     2281 ggggttgacc agccacatcg ccgaggtggc gaaccggctg gctgaagcgg gcttcgtcgc
     2341 gttggctccc gatctgttcg gcggcgttac cacccatgat gccgacgagg cgggcaagtt
     2401 gatgcaggat ctgccggtgg atcaggcggc ccgcgacctg ggtggcgcgg tggactacct
     2461 gctgcaccac gacgcggtta ccagctcgac ggtcggggca gtcgggttct gcatgggcgg
     2521 cggcttcgtc ctggtcctcg ctgcccagca gggtgacaag atcggcgctg cggtggcgtt
     2581 ctacgcggtc ctcggcgagg actatccgag ctttgagaac ctttccgccc cggtgctggg
     2641 tcacttcggc gagcaggatg cgtttcagag caccgaggcg gtgcaggaac tcgcggcgac
     2701 catcgagcgg cagaccgggc gacggcctga tttccacttc tacccggccg ggcacgcctt
     2761 cttcaacgac gagaatctgc tgggcaccta cgacccggag caggccgctg aggcgtggaa
     2821 cgccacggta gatttcctcc gtgagcacct gggagtgccg caggcggggt gaggaggcac
     2881 tgccgtggtt cggcgactgg ccggatgggt gctggttgtc ttcggggtcc tcggagcggg
     2941 cttgaccggg atgtccatcg cccaggcggc gacctactct gactacctcc ctgcggcggt
     3001 tgcggccgct atcttcgcgg tgatcacgct gggctgtctc ggtggtggtt ggttgctgct
     3061 gcgccaacgc agcacgcggc gcccgccgac catggagtgg caaccgtgcc ccgggcaggg
     3121 atggctcccg cagcaggcgt gggcggagct gcccgacgtg cagccccgcc ggccccggct
     3181 cggcccgcgc ccacccacac ccgttggcgg cgtgccgcca gaccggctgt tacggcggtt
     3241 gtggctggtg cgagccgaac tggcattcga tcagtcgggc ggcatgcggt tcgggtccct
     3301 catcggctgg atgttgctgc tggcattcga ggcgggagcg gcgctgctgg tgggcgcctt
     3361 cctcgctacc ggggacctga cggctccgga tcggacggca gtggccccgg tcctgggctg
     3421 tctggtcatt gcggtggtgg tcagcggtga gcgcgcatca cgaaatcccc ggcgtcacgt
     3481 ggagctgcgc cggatgcagc gagaactgga gaccgcgtac gctgccacgc ccggcacgat
     3541 tcccgccgga gcgacagtgc ggctcggtga cccgacgccc cgctacgacc caggtcgggc
     3601 accccaggaa agggaccgct cgaatgccgt acgaccatga agctgaccgc gagttggtcc
     3661 agcagacgtt cagccgggaa tggggcgagc cggtctgcgc tgtgcagatc agagagttcg
     3721 tcccgagctt caaggtgccc ggccggcagg ctaacggctc gcccagctcg caacgccggg
     3781 tacgccgttt cttcatctct gttgcccaga ctctgcattt cttagtggcg ctcgccgccg
     3841 gagtgttcct cgacggcaac ctcaacggtc catcgatccc aacctaccgc ggtaaggtcc
     3901 aaggctctga ggggtcgtcc gcggtccagt tcgctgaact gctccgtggg acagacttct
     3961 ggctggtggt gtcagcatcg aggctcgccg ttgtccaagc gggatcctcg ccaccggtca
     4021 tcgtgatgtg gtcatcggtg gggccggatc gcccgcagcg agatggcgat gctgcggcgt
     4081 tgctgtggcc cgatggatcc agggtgtcac tcgttctcga cgacgcggag agtcagcgac
     4141 tggtcgcagt ctgatcgttc gtcaactttt cgccgcccgc cgggtcccag aagaccgact
     4201 cgaagacgtc cagcgcgaga tcgcaaatgt gcgcccagtc ctgccagcag ttggacgcga
     4261 cgccgatcac ggccaccgcg gaaccggccg gatccgggat ccaggcgagc acctgccgct
     4321 ggagcagtgg caacgggcca acaccgtcga tctcgatcat tgcgggttcc tcgcggatcg
     4381 tggccagcgc cgggccgcga gggagctgca gtatctcagt gccggtggcc ggatctgcgg
     4441 cgtagacctc acgcaacccg gcgatcactg cgctggggtc gtcgtggtct gagtccatcc
     4501 gggccgccgt gagtaccacg ctgaccgggc gctgtggatc gtcgggggag cggaagaagc
     4561 caatcgacgt gtgctgggcg ccactgtcag cggcgatgag gccgagcaca gtcagcgact
     4621 cggcgacctt cgcggcgctg gtgtcgccca ctgggaggcc gaagcgctcc tccagctcgt
     4681 gctgaatctg cgcggtcgcg gcagcggcgg gcagctcgat gaagttctcc ggcagctcga
     4741 cggtgtaacc ggtcataccc cacctcgagc agtaacccgg gaactgaagg tctgcgacgc
     4801 cgagggtggc gggtcgccgg gcccggtgag ctggtgatag acctcaccgg cgatcgactt
     4861 gccgcccttg atgccggcat ccagcgcccg accacccacc gacagcgggt cgatgatccc
     4921 ctccttggtc agcttttcgg cgaccatgtt cagtcccttg gtcccgatgt actggccctc
     4981 ccg
//
LOCUS       DASVXZ010000761         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1387081, whole genome shotgun sequence.
ACCESSION   DASVXZ010000761 DASVXZ010000000
VERSION     DASVXZ010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1387081"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VF788_16220"
     CDS             <1..773
                     /locus_tag="VF788_16220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935693.1"
                     /translation="EGPTGGQGSSADQGPPASQESPEDHGPPPDGQGRGEHEFVTLPV
                     GAHLPSGQECAERVQRDQQEPRPENTSANQFVPDRVSMPTWKDFTEEANQQFVSRIDG
                     KFTGTTGDILTWGACKWGLDADILKAVAVQESDWRQSTVSDESNNAEDCVGGATPPCP
                     TSFGIMQLKDIALPGSYPLSQQSTAFNVDYYGARIRACYEGWVTYLHDDYGPGDLRDC
                     VGWHWSGHWKDAGAQRYIQRVDRYLDSRPWLDWTSEHH"
     gene            complement(781..1071)
                     /locus_tag="VF788_16225"
     CDS             complement(781..1071)
                     /locus_tag="VF788_16225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935694.1"
                     /translation="MEDWAATATAGVHAATELSDHHREGAALNNLGSALPQTRGPPGP
                     RRLTDAREALEQAAALFVILRAYDDADRVVGFLTSLNGESIAAAGRELAPRR"
BASE COUNT          321 a          575 c          529 g          247 t
ORIGIN      
        1 gcgaggggcc gacagggggt caagggtcct ccgcggatca agggccgccc gcgagtcagg
       61 agtccccaga agatcacggg ccgcccccag atggtcaggg gcgcggcgag cacgaattcg
      121 tcacgctgcc cgtgggcgcc cacctgccct cgggtcagga atgcgccgaa agagtccagc
      181 gcgaccagca ggagccacgg ccggagaaca cttcggccaa ccagttcgtt cctgaccggg
      241 tgtcgatgcc gacctggaag gacttcaccg aggaggccaa ccagcagttc gtgtcccgca
      301 tcgacggcaa attcaccggc acgacagggg atatcctcac ctggggggcc tgcaagtggg
      361 gcctggacgc cgacatcctg aaggcggtgg cggttcagga aagcgactgg cggcagagca
      421 ctgtctccga cgagtcgaac aacgccgaag actgcgtcgg cggcgccaca ccaccctgcc
      481 cgacgagctt cgggatcatg cagctcaagg acatcgcgct acccggctct tacccactgt
      541 cgcagcaaag caccgcgttc aacgtcgact attacggcgc ccgcatccgt gcctgctacg
      601 agggctgggt cacctacctc catgacgatt acggccccgg cgatctccgg gactgcgtgg
      661 gctggcactg gtcgggccac tggaaagacg ccggcgcaca gcgctacatt cagcgggtag
      721 atcgctacct cgacagcaga ccctggttgg actggaccag cgagcaccac taagcacagc
      781 tcagcggcgc ggggcaagtt ccctgcccgc ggcggcgatc gactcaccgt tgagcgaggt
      841 caagaatccg acgacccggt cggcatcgtc gtatgcgcgc aagatgacga acaatgccgc
      901 tgcttgctcc aaggcttcac gcgcgtcggt caagcgcctt ggccctggtg gtccccgggt
      961 ttgtggtaga gcgctgccga ggttgttcag cgcggcccct tcccggtggt gatcgctgag
     1021 ctcggtagcg gcgtgcaccc cggcggtcgc ggtggcggcc cagtcctcca acgacgcacg
     1081 tcccgtaccc tgcgccgagc acctgccgtt acggctttcg agcaggcccg gctggcgtac
     1141 gcccgggtat aacgaacgcg gcgccccgaa acagtgcaaa caccccgcac tcggggccac
     1201 caccgcagac tgctccccgt gtaggcaaac gcagtaagac acccattcgt gaacatgcca
     1261 cccacaagtg gagtctcgtc agcagcacgc tcacatcgag ctaaaccagc acgttcccaa
     1321 agatcccggc cgggtgtatg tgcgcctgac actggccggt cggatccgcc aggttcctcg
     1381 tcgctggcac ccacccacag cctgtacaca caatctcgtg cccgctccac agcctgtaca
     1441 caccacggtg atgaagaccc cgccggagcg cctctagggt gtccgcctca tgggacagac
     1501 gccgatttat gaccagttgc gtggtgagcg aatcaatgcc gatgtcccag ccacggggac
     1561 gtacccgacg ggtcaaccag cgggtgaggg aggacgggca gccccggtgt ggggaccgcg
     1621 agcaggcctt tcgctggcag tccacgcgcg acaagcaccg gcacacgccg ct
//
LOCUS       DASVXZ010000762         3638 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1298223, whole genome shotgun sequence.
ACCESSION   DASVXZ010000762 DASVXZ010000000
VERSION     DASVXZ010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1298223"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VF788_16230"
     CDS             <1..209
                     /locus_tag="VF788_16230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935695.1"
                     /translation="SLNLEVRCPDPAVGPLELLNIGEMLMEPIRNGLVMPALDIPARV
                     RDLVVDPALRLAGGMIHLDAPLGQ"
     gene            483..2033
                     /locus_tag="VF788_16235"
     CDS             483..2033
                     /locus_tag="VF788_16235"
                     /inference="COORDINATES: protein motif:HMM:NF012486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosinase family protein"
                     /protein_id="HEX8935696.1"
                     /translation="MQPTQQYIRQNIWEVGGDWADPILWYARGVAAMRARALAKPTSW
                     RFYGAIHGIDQRLWRQLGYLSQSDPMPSSALRRAFWNQCQHGSWYFLPWHRGYSLAFE
                     ANIREAVINLGGPADWALPYWNYFKPNQSQLPPAFASVDWPDGQGNNPLYVQQRYGPR
                     NDGNVFVPVDLINLTAMNDPDFSGSASGGSPGFGGVDTGFEHAGQVHGGIETQPHDWV
                     HGLVGGGDPQNPRLPGLMSDPDTAGLDPIFWLHHANIDRLWQVWRQNPSTHVDPIDPR
                     WIQGPSSIGERNFSMPMPDGTTWTYTPGDMEDLAKLGYTYDDLSPVVAVPEPGQRLLR
                     LGVSSAAVNAIQGAVVPSGNNVELVGANHEALRITGSEAHTSVQLDPGMRRKVSASLA
                     RAAAAEEATPDKVFLNLENVRGLIDSTAFQVYIGLPEGVDPADYPERRAGGIALFGVR
                     KASLADGENAGQGLTFVLDITNIIDELHLNNTFDVETLDVRIVPIKPVPEDAQVSIGR
                     VSIFRQGR"
     gene            3035..3271
                     /locus_tag="VF788_16240"
                     /pseudo
     CDS             3035..3271
                     /locus_tag="VF788_16240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444896.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
BASE COUNT          728 a         1114 c         1095 g          701 t
ORIGIN      
        1 gctccttgaa cctggaagtg cgctgccccg accccgcggt cggcccacta gagctgctga
       61 acatcggtga gatgctgatg gagccgattc ggaacggatt ggtcatgccc gcgctggata
      121 tcccggccag ggtgcgcgac ctagtcgtgg atcctgcgct gcggctggcg ggtggcatga
      181 tccacctcga tgccccgctc ggccagtagc tcctcgacgt ctcggtagga caagccgtag
      241 cgcaggtact aacgcacagc catggtgtcg cttccggagg gaaccgaaac ccggtgaagc
      301 tggaccgcgg cgcggacagc cgagagtggt gacgacgcat caacactgcc tgcccgagcc
      361 cgccatcggc ggacgcaaca gtcccgtcgg aggtctttgc gtaaccccgt aaattggctg
      421 agatgcaggt cggtccggag tagggtgact gatccaagtg acttgctttg gaggaaactg
      481 ctatgcaacc gacgcagcaa tatattcgcc agaatatctg ggaggtcggc ggcgattggg
      541 ccgacccgat tttgtggtac gcgcgcggcg tcgcagcgat gagggcccga gcgctcgcca
      601 agccaacaag ctggcgtttc tatggcgcga ttcacggcat cgatcaacgg ctttggcggc
      661 aactcggtta cctgagtcag tccgatccaa tgcccagcag cgccctcagg cgggctttct
      721 ggaaccagtg ccagcacggc agttggtact ttttgccgtg gcatcgcggc tattcactcg
      781 cctttgaggc gaacattcgc gaggcggtga tcaatctcgg cggtccggca gactgggcgc
      841 tgccgtattg gaattacttc aaacccaacc aatctcagct tccgccggcc ttcgcatcag
      901 tggactggcc cgacgggcag ggcaacaatc cattatatgt tcagcaacgt tatggaccga
      961 ggaatgacgg caatgttttt gtgcctgtcg atctgataaa cctcactgcg atgaatgatc
     1021 cagatttttc gggcagcgcc agcggaggta gtcctggctt cggcggcgta gacaccggat
     1081 tcgagcacgc cgggcaagtg catggcggca tcgaaacaca gccacatgac tgggtccacg
     1141 gcctggtcgg tggcggggat ccacagaacc cccgacttcc tggtctgatg agtgatcccg
     1201 acaccgccgg actcgacccc atcttctggt tgcaccacgc taacattgac cggctgtggc
     1261 aagtgtggcg acaaaaccct tcgacccatg tcgaccctat tgatcctcgg tggattcaag
     1321 gccccagcag cattggagag cgcaactttt cgatgcccat gccggatggg actacgtgga
     1381 cttatacacc tggcgacatg gaggatttgg caaaactcgg ctacacctat gacgatctct
     1441 cgcctgtggt ggccgtgccg gaaccgggcc aacgactgct gcggttagga gtaagctcgg
     1501 cagcggtgaa cgcgatacaa ggagctgtcg tgccgagcgg aaataatgtc gaactagtgg
     1561 gcgccaacca cgaagcgctg cggatcacgg gaagcgaagc tcacacctct gtccagctcg
     1621 atccaggcat gcgtcgcaag gtctctgcca gccttgctag ggcggctgcg gccgaagagg
     1681 ccacacccga caaggtattt ttgaatctgg aaaatgttcg cgggctcatc gactctacag
     1741 cgtttcaggt atacattggc ctgcccgagg gcgtagaccc cgctgattat ccggaacgac
     1801 gggcaggcgg catcgcgctg ttcggcgtgc gcaaggccag tctcgccgat ggggagaacg
     1861 ccggccaagg cctaaccttc gtgctggaca tcacaaacat tatagacgaa ttgcacctga
     1921 acaatacatt tgacgtcgag accctggacg tgcggatcgt gccgataaag ccagttcccg
     1981 aagacgcgca ggtgagcatc ggacgcgtga gcatcttccg ccaaggtcgc tgatcgaatg
     2041 tccgcccgat gatgactccc gctgctcagg aacgcttgcg agttcgagtt tctctgctat
     2101 tgttcagcgc gatcgcttgg agcctgcttc tagtgctatc gagcggcacc gcaatgccca
     2161 cccaccacat gaccacgacg ccaagcgtga ccccgatgca cggggccacg cggccggtat
     2221 cgcttaatat ggctctggcg cacagctcac ccgcttcgct agccctaggc tgggctgtga
     2281 tgttggcagc catgatgttg ccgctgctga acgcgccagt gcgccatgtg cgcgctcgga
     2341 gcttcgccca gcgtcgtgcg cgcgccgtta tactattcgt aatcggctat gccacgattt
     2401 ggatggcagc cggtgctaca ctacttgcag tatcggtggt gatacaaatc atcccactcg
     2461 aatcgtcgct acttatggcg tcagttgctc tcactgcgct tgtttggcag tgttcgcctg
     2521 tcaaacagcg ctgtctcaac catgggcacg tccatcctga gctggccgcc ttcggtgcgg
     2581 ctgcagatat tggcgcactc cgtttcgggt tcacgcacgc agtctggtgc gtcggttcat
     2641 gctgggcgct gatgctcttg cccttgctgg tttcgcacgg acacctcgcc gtcatggccg
     2701 ctgtagcgct gtggcttgcc gctgaacggc ttgatagacc actgacgccg cgctggcgct
     2761 ggcgcggtcc gggtaaaggt gtccgtatag ccgtcgcgca ggcgcgaatg cgcgcaacgc
     2821 agctaacgca accctaagcg gaagctgcgc gcataaatta tccgggcacg ccggccgacc
     2881 attgctgagc ggtcgaaacg acagtgactc tgcgccacaa agacgacaat gacgcagtcg
     2941 gctctcggtc accgccagcc acccacctat gctgttgaaa atatccgacg atcacgcctc
     3001 tcgccggttc tgtcgcggtc attattagac cctccgggat gccacgctca ttggcaagga
     3061 cgagacgttg cggctcgtcg agcgggccag ccgggtcggt gccgggtggg cgatcacgat
     3121 caatttcccg gctactcgca aaaccgtcga catgattaag aaccgagaag cgttggcctc
     3181 ggcgctgacc gtggacgaag tgcaactgct cgtcgagtgc gtgcggggta acggtcggca
     3241 cgcaggtcgg gtcacaatgt gggtcgctga tgccggtccc tcgccagatc cacgacgaca
     3301 ccaagcccgc gtcgaccccc caccccgcca caccactggg atgctgttcc agccggaata
     3361 ccgcgtcgtt gatgtcgcgg agcgaccgag ggaatccagg ccaagatcag cgcaatcacc
     3421 cacagcccgc gagtcggccg tcgctcacgg gtgagcgtcg ccagcaccaa catgggcaac
     3481 cctgcctcgt caccagcgat cctgctacca aatcttggtg gaagctaacg aaaaccgcag
     3541 tgccggggtc tcagaatcac caagaccgcg ccgaaatacg gcaaataccg accgcggctg
     3601 tcacgcggga aaggatctaa cgggatatga cgccagca
//
LOCUS       DASVXZ010000763         3098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_86930, whole genome shotgun sequence.
ACCESSION   DASVXZ010000763 DASVXZ010000000
VERSION     DASVXZ010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86930"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..834)
                     /locus_tag="VF788_16245"
     CDS             complement(<1..834)
                     /locus_tag="VF788_16245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8935697.1"
                     /translation="MSEQRPVHAGMAGTIDVGGDLTVNRLGFGAMRITGPGIWGEPAD
                     RDEVKAVFRRAIELGVNFIDTADSYGPHISEELISETLYPYPDDLVIATKGGLERTGP
                     GQWPANGRPEHLIEACEGSLRRLKLDQIPLYQFHRPDPAVPLEDSINALVTLKEQGKI
                     RHIGLSNVTEVQLRRAQRLTPIVSIQNRYNLEDRQSESLVDLCEQEQMVFLPWAPIQS
                     LDRNRIVHELAQRYDATPRQIALAWLLARSPAILPIPGTGSVSHLEDNLAAATIKLAP
                     AD"
     gene            complement(1009..2193)
                     /locus_tag="VF788_16250"
     CDS             complement(1009..2193)
                     /locus_tag="VF788_16250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010243901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HEX8935698.1"
                     /translation="MMSTITADLPGTPPPRARRGSRRRGVLRDLEHPSDLFANLGPNW
                     FASIMGTGIVANAAATLPAQFPGFRTTATIVWAFAAVMLVALSGAWIVHWSRHGETAK
                     GYAHDPVMAQFWGAPPMALLTVGDGTLLLGKDWIGLTPALTVDWALWTAGTALGLITT
                     VWIPFRMMTTHVIKPDSAAASWLMPVVPPMVSAATGALLIPYLPEGQPRLGMLMACYA
                     MFGISLFATLFIVPQVWQRLVQHKAGAAASVPTVWIVLGPLGQSITAVNLLAGDASGA
                     LPAPFGQGASAFGLFYGVPAWGFTAMWMVLAAALTLRTARQKLPFALTWWSFTFPVGT
                     VVTGTSALSTRTHAELFTVASVMLYVMLVAAWITVAIRTAHGSYHGYLFRPTPTPPFG
                     NR"
     gene            complement(2248..2424)
                     /locus_tag="VF788_16255"
     CDS             complement(2248..2424)
                     /locus_tag="VF788_16255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935699.1"
                     /translation="MTGAIAVGAISGGVFNPAVAISGAAIGLFAWPTLWAYLIAQLAA
                     AAGLAFLTLNPDDK"
     gene            complement(2421..2681)
                     /locus_tag="VF788_16260"
     CDS             complement(2421..2681)
                     /locus_tag="VF788_16260"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HEX8935700.1"
                     /translation="MTLAALVRGRIGVAEAIGYWIAQLIGGLLAMALARWVIHPAQVS
                     TLTLSGHQLSAAFIAELLFTFALCYVMLNVATSKDHPTNSPW"
     gene            complement(2678..2974)
                     /locus_tag="VF788_16265"
     CDS             complement(2678..2974)
                     /locus_tag="VF788_16265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935701.1"
                     /translation="MALTTGARGQATLNVMDIITHTDARPETSPVATEVGPAPAAVAG
                     RKYAVKLIGTFLFLFTIAASVLSASTLAPLAIGAALMVMIYAGGHISGATTTPR"
BASE COUNT          525 a          956 c         1119 g          498 t
ORIGIN      
        1 atcggccggg gccagcttga tcgttgcggc ggcgaggttg tcctctaggt gtgacaccga
       61 tccggtgccc gggatcggca ggatcgccgg tgaccgggcc agcagccagg cgagcgctat
      121 ctgccgcggt gtcgcgtcgt agcgctgcgc taactcgtgc acgatccggt tgcggtcaag
      181 gctctggatc ggcgcccacg gcaggaagac catctgctcc tgctcgcaga gatcgaccag
      241 cgactccgat tggcggtcct cgaggttgta gcggttctgg atcgacacga tgggggtgag
      301 tcgctgtgct cgccgcagct ggacctcggt gacgttggac agcccgatgt gccggatctt
      361 gccctgttcc ttgagggtga cgagggcatt aatcgagtcc tccagcggca ccgcggggtc
      421 aggccggtgg aactggtaga gcgggatctg gtcgagcttg agccgccgta ggcttccctc
      481 gcatgcctcg atcaggtgct cgggccggcc gttggccggc cactggcccg gaccggtgcg
      541 ttcaaggccg cctttggtcg cgatcaccag atcatctggg tacgggtaga gcgtctcgct
      601 gatgagctcc tcgctgatgt gtggcccgta ggagtcggcg gtatcgatga agttgacgcc
      661 caactcgatc gcgcggcgga acaccgcctt gacctcgtcg cggtcggcgg gttcgcccca
      721 gataccggga ccggtgatac gcatggcacc gaagccgagg cggttgaccg tcaggtcgcc
      781 gcccacatcg attgtgccgg ccatcccggc gtgcacgggc ctctgctctg acatggatca
      841 tgactccttg atctccggct cagcgactgt ggtccccacg gtatgtcgag cgtgtcctga
      901 gcggcgagcg ctcgacccca ctatcgctcc caggcgggct ggtgtcttcg cagccagcgc
      961 ccaacgtgga tacctgtcag cgggggtcag gctgtggtga caggtttctc accggttccc
     1021 gaatggcggt gtgggcgtgg gtcggaaaag gtacccgtgg taactgccgt gggcggtacg
     1081 gatcgcgacg gtgatccacg cagccacgag catgacgtag agcatcaccg aggcgacggt
     1141 gaacagttcg gcgtgggtcc gcgtggatag ggcgctggtg ccggtgacga ccgtgccgac
     1201 ggggaaggtg aagctccacc aggtgagggc gaacggcaac ttctgccggg cggtgcgcag
     1261 ggtgagcgcc gcggcgagca ccatccacat cgcggtgaag ccccatgcgg gcacgccgta
     1321 gaacaggccg aaagcggatg cgccttggcc gaagggtgcg ggcagagcac cggaggcatc
     1381 accggcaagt aggttcaccg cggtgatcga ctgtccaagc gggccaagga caatccacac
     1441 cgtcggcaca ctcgccgcgg ccccggcctt gtgctgcacc agccgctgcc agacctgcgg
     1501 gacgatgaac agcgtcgcga acaggctgat tccgaacatc gcatagcagg ccatcagcat
     1561 ccccaggcgg ggctgaccct cgggcaagta cgggatgagc agggcgccgg tagccgcgga
     1621 gaccatcggt ggcacgacag gcatcagcca actggcggcg gcgctgtcgg gcttgatgac
     1681 gtgggtagtc atcatccgga acggtatcca gacagtggtg atcagcccga gcgcggtgcc
     1741 agccgtccag agggcccagt caacggtcag cgcgggggtc aggccgatcc agtccttgcc
     1801 aagcagcagg gtcccgtcgc cgacggtcag caatgccatc ggcggggcgc cccagaactg
     1861 cgccatcacc gggtcgtggg cgtagccctt cgcggtctcg ccgtgccggc tccagtgcac
     1921 tatccatgcc ccgctgagcg cgacaagcat gactgcggcg aaagcccaga cgatggtggc
     1981 ggtggtgcgg aaacccggga actgggccgg cagggtggcg gcggcgttgg ccacgatgcc
     2041 ggtgcccatg atggaggcga accagttcgg gcccaggttc gcgaacaggt cggatgggtg
     2101 ctccagatcg cgcagaaccc cacgccgccg cgatccgcgg cgggcgcggg gtggaggcgt
     2161 cccgggcagg tcagcggtga tcgtgctcat catggtccca cttctccgtg atgctgagga
     2221 ttgcgtcgat cagccgcaag gagtggatca tttgtcgtcg gggttgaggg tgaggaaggc
     2281 cagtccggcg gcggcggcga gttgggctat gaggtaggcc cacagggtgg gccaggcgaa
     2341 caggccgatg gcggcgccgc tgatggccac agccgggttg aacacgcccc cggagatcgc
     2401 gcccacggcg atcgcgccgg tcaccacggt gagttggtgg ggtggtcctt gctggtggcg
     2461 acgttgagca tgacatagca caacgcgaag gtgaacagca gctcggcgat gaacgcggcg
     2521 ctgagctggt gaccggacag ggtcagggtg ctgacctggg cggggtggat cacccaacgg
     2581 gccagcgcca tcgccagcag cccgccgatg agttgggcga tccagtagcc gatcgcctca
     2641 gccactccga tccggccgcg gaccagcgcg gcgagggtca ccgcggggtt gtagtggccc
     2701 cggagatgtg cccgccagcg tagatcatga ccatcagggc ggcgccgatc gccagggggg
     2761 ccaacgtgct ggcgctgagc acgctggcgg cgatggtgaa caggaacagg aacgtcccga
     2821 tcagcttcac ggcgtatttc cggccggcga ccgcggcggg cgcaggaccc acctctgttg
     2881 cgactgggga ggtctcggga cgagcatcgg tatgcgtgat gatgtccatg acgttgagag
     2941 tcgcctgccc gcgggcacct gtcgtcaggg ccaccgccca tctgcgctgc cagcccaccg
     3001 gacactttgc ctacccgcca gctgcaacat gcctgccgga tcagagacga gcacggtgtc
     3061 actctttgca gctagcagga acaacaggtt gcagccaa
//
LOCUS       DASVXZ010000764        10173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_894815, whole genome shotgun sequence.
ACCESSION   DASVXZ010000764 DASVXZ010000000
VERSION     DASVXZ010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10173
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894815"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..663)
                     /locus_tag="VF788_16270"
     CDS             complement(<1..663)
                     /locus_tag="VF788_16270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005455544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEX8935702.1"
                     /translation="MTNSTLTNSTSAGANPVHETVAVLDNGTFGTRTVRFETGRLARQ
                     AAGSVVAYLDDDTMLLSATTASKQPKEQFDFFPLTVDVEERMYAAGRIPGSFFRREGR
                     PSTDAILTCRLIDRPLRPCFVDGLRNEVQVVVTVLSLNPADPYDVLAINAASASTQLS
                     GLPFDGPVGATRMALVSHEGASQWVAFPTHEQLSRAVFDMVVAGRVAGDGATSDVAIM
                     MVE"
     gene            complement(879..1148)
                     /gene="rpsO"
                     /locus_tag="VF788_16275"
     CDS             complement(879..1148)
                     /gene="rpsO"
                     /locus_tag="VF788_16275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011559497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEX8935703.1"
                     /translation="MALSTAQKSEILAEYGLRGGDTGSPEAQVALLTKRIMDLTEHLK
                     QHKHDHHSRRGLLLMVGRRRNLLNYLAKVDIARYRSLIERLGLRR"
     gene            complement(1329..1910)
                     /locus_tag="VF788_16280"
     CDS             complement(1329..1910)
                     /locus_tag="VF788_16280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935704.1"
                     /translation="MDEQLAVARNVALQREWYGESLGDRVRRLVVAFDCSQAQLAEVL
                     GLSAPMLSQLMSGRRAKIGNPAVLARMVMLERRVLTPDVASGDPAAIREALEQVRDSR
                     PTVSRPTVSRSPGGLSAGGRGGLSAGGREELPVGEHGEDVLVPALRAMVPQAQLAAAA
                     RLLREEFPLLAGLLRRAAGPDPDIGAELDGGWG"
     gene            complement(1981..2913)
                     /locus_tag="VF788_16285"
     CDS             complement(1981..2913)
                     /locus_tag="VF788_16285"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEX8935705.1"
                     /translation="MQRWRGLEAIPNGWGRSVVTIGVFDGLHRGHVQLVDHAVARARE
                     MDVPSVLMTFDPHPSEVVRPGSHPAQLTTLHRRAELVEQRGIEVFFVLPFTAELSRMP
                     ADEFVHAVLVERLHVADVVVGDNFSFGHKAAGNIELLRELGRRFGFTAEGLGLLSHGE
                     LTFSSTYIRSCIDAGDVAAASAALGRPHRVEGIVVRGDQRGRSLGYPTANLSTPRYAA
                     IPADGVYACRFVHRGRELAAAVSIGTNPTFSGRERRVEAFVLDLDEDLYGERVALDFV
                     ERLRGMCRFDSSEQLVAQIDDDVARTRTVFDQRR"
     gene            complement(2949..3848)
                     /gene="truB"
                     /locus_tag="VF788_16290"
     CDS             complement(2949..3848)
                     /gene="truB"
                     /locus_tag="VF788_16290"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEX8935706.1"
                     /translation="MSSAATLALGGLVVVDKPAGLTSHDVISRLRRLLRTRRIGHAGT
                     LDPMATGVLVCGVQRATKLLGHLPLEPKVYQATARLGRSTSTDDAEGEPTGGADASTL
                     DEQEILAAMARLRGPIEQVPSTVSAVKIDGKRAYALARAGEQVLLSPRPVVVSRFELL
                     GLRRGEAVTDLDVLVECSGGTYVRALARDLGAALGVGGHLTALRRTRVGPYDLSVART
                     FDGLTSAPGLCAELDEVVTQAFPHRAVDRQQVRILAHGGSLPALGLTGTHAAISSNGE
                     AIALLAERDGQARPILVLRPAGE"
     gene            complement(3845..5011)
                     /locus_tag="VF788_16295"
     CDS             complement(3845..5011)
                     /locus_tag="VF788_16295"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX8935707.1"
                     /translation="MGLAPEFPTTATGYESVLSAVIERTVGPQAAEIDRSGTFPRDSV
                     QALGDAGLLGLISAPQVGGGGGSLAEAAQVVESVGARCASTAMVLLMHYAAVPVIEAH
                     GPHDVRRAIARGEHLSSFAFSEVGSRSHFWAPLGTATIGEGDTVQLDARKSWVTSAGQ
                     ADSYVWSSRSLAGDGGMTLWLVPSNVQGLRVAGKFDGLGLRGNASSPVSAVGVVVPAS
                     ARLGDDGAGLDIALATALPHFLVLNAALSLGIMEALVAEAGAHLARSRLQHLDRTLVE
                     QPVSRAAFARLRVCTDGVRAFLRDTLAALSTGRDDATLRTLEVKAVAAEAAAEVADGV
                     LRLCGGAAFRKELGVERLFRDALAARVMAPTTDALYDFVGRSCLGLPLFDAADK"
     gene            complement(5108..6115)
                     /locus_tag="VF788_16300"
     CDS             complement(5108..6115)
                     /locus_tag="VF788_16300"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEX8935708.1"
                     /translation="MGNGVIAPNATHGDELRAAAALLAQARDVTLVAHVQPDADALGS
                     ALALGLALQQRGARVRVSFGEPAQPPESLRGLDVADLIVPPDEVPTHPELLVALDTAS
                     RGRLGCLSDRVDTAGAVLVIDHHTTNDGFGTHQLVDTGAKATAVLVLHLLDALGIALD
                     EPIARCLYAGVVTDTSCFRRADPGTHALAARLLAAGVDPDATTRELLDTHPFGWLAML
                     ATVLGRARLEPASAQGCGLVHTAVRLADAEGLRSEEVESVVDLVRTTSEAEVAAVLKE
                     TGPDRWSVSLRAKQRLDVSAAATELGGGGHRLAAGFATEGTAEDVLDRLRAALGRAPI
                     A"
     gene            complement(6116..6550)
                     /gene="rbfA"
                     /locus_tag="VF788_16305"
     CDS             complement(6116..6550)
                     /gene="rbfA"
                     /locus_tag="VF788_16305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEX8935709.1"
                     /translation="MADPARARRLAKRIAKIVASGLEHEVKDPRLTMVTITDVKVTGD
                     LRDATVYYTVLGETVDAPPDTAGAAAALASATGVLRSLVGRATGVRFTPTLTFRCDEL
                     PDGARRIDELLAQAHDADAEVARIAAAASPAGEPDPYRQAEP"
     gene            complement(6608..6904)
                     /locus_tag="VF788_16310"
     CDS             complement(6608..6904)
                     /locus_tag="VF788_16310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF503 domain-containing protein"
                     /protein_id="HEX8935710.1"
                     /translation="MYVGVVELDVMFGDVHSLKQKRSLVRPVIAELRRRFEVAAAEAG
                     HLDLHRRALIGVATIAADGAHVRDVLEACERLVAGRPELELLAARHRTLGPDDD"
     gene            complement(6992..9943)
                     /gene="infB"
                     /locus_tag="VF788_16315"
     CDS             complement(6992..9943)
                     /gene="infB"
                     /locus_tag="VF788_16315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEX8935711.1"
                     /translation="MAGKARVHELAKELGVTSKDVLKKLADLGEYVKSASSTVEAPVA
                     RKLRDSFPSDTGKASAPNGASVSGRPSNAGGGTSPAMGGEATAKPSPVPSPTRRPETA
                     PNSARPGAAPGATPLGIPQRPTPVERRPAPASPPISEPASPPPAAAEPNRPAAEHRVA
                     SPRPPTEQRPSPRPDEGASPGAPRPRSPKPGPRSPRVGNNPFGVGSAAPPRSPGQRPG
                     PPASPAGPSNMPPRPGGTNRPTSGRTGPPGSGGPRPNPGMMPPRPPGPGAAPGRPGRA
                     GADGGGRGGPGGPGGSRGGPGGRSGGGAGGGFRSGGAPGGPAGAGAPAGGGFRGGAAR
                     PGGGGRGRGGAAGAFGRPGGPARKGRKSKRQKRQEFDNMQAPSVGGVRLPRGTGETVR
                     LRRGSSLTDFAEKIDANPAALVQALFHLGEMVTATQSVSDDVLELLGQEMNYRIQVVS
                     PEDEDRELLESFDLSYGEDSGDEDDLAFRPPVVTVMGHVDHGKTRLLDSIRKANVMGG
                     EAGGITQHIGAYQVATELDGVERLITFIDTPGHEAFTAMRARGARSTDIAVLVVAADD
                     GVMPQTVEAINHAKAAGVPVVVAVNKIDKENADPTRIRGQLTEYGLVPEEYGGDTMFV
                     DISAKEGTNIDSLLEAILLTADASLDLRANPEMEAQGVAIEAHLDRGRGPVATVLVQR
                     GTLRVGDSVVAGDAYGRVRRMVDEHGDDVIEALPSRPVQVHGFTSVPGAGDNFLVVDE
                     DRIARQIADRRRTRERNAELATRRRRVSLEDLDAALKETSELNLILKGDNSGTVEALE
                     DALLKIDVGDEVELRVISRGVGGITESDINLAIADNTVVLGFNVRADGKATALANREG
                     VEIRYYSVIYQAIEDIEQALKGMLKPIYEEVSLGRAEVREVFRSSKVGTIAGCMVTSG
                     EIRRNAKARLLRDNVVVREDFTVSSLRRFKDDASSVREGFECGLTLSSYHDLRVGDEI
                     ETYELREKPRT"
BASE COUNT         1668 a         3535 c         3390 g         1580 t
ORIGIN      
        1 ctcgaccatc atgattgcta cgtcgctggt ggcgccgtca ccagccaccc taccggcgac
       61 gaccatgtcg aataccgctc ggctgagttg ctcgtgggtg gggaaagcaa cccactggct
      121 ggcgccttcg tgactcacca aggccatccg ggtagcgccg accggaccgt cgaacggcag
      181 gccggacagc tgcgtggacg cggacgcggc gttgatcgcg agcacatcgt aagggtcggc
      241 cgggttcagg ctgagcaccg tcacgacgac ctggacctcg ttacgcaagc cgtccacgaa
      301 acagggacgc agtggccggt cgatcagccg gcaggtaagg atcgcatcag tggacgggcg
      361 gccctcgcgg cggaagaacg agcccgggat gcgcccggcc gcatacatcc gttcctcgac
      421 gtcgacggtg agcgggaaga agtcgaactg ttccttgggc tgcttggacg ccgtggtggc
      481 ggagagcagc atcgtgtcgt cgtcgaggta ggcgacaacg gatccagcgg cctgccgggc
      541 cagccggccg gtctcgaatc gcacggtccg ggtaccgaag gtgccgttgt ccagcacggc
      601 gactgtctca tgtaccgggt tggcaccggc gctcgtggaa ttagtcaatg ttgagttggt
      661 catcgttctc ctcttcgcag cacgggccag agctggcgcc atcggcgtgg gaggcaggac
      721 gacaggccgg tcttcgatcg aagcgcccgg agcatgatgc acgctctcgg gagccactac
      781 cgaggaccgg cgaacgacgg tcctgacgcc ggtgacgagg cggctcgtgc agcgatctgt
      841 ggttgtgtat ctagtgggcc cagattgcaa gcccagggtc agcggcgcag gccgaggcgc
      901 tcgatcaggg accggtaacg cgcgatgtcg acctttgcga ggtaattcag caggttgcgt
      961 cgacggccga ccatgaggag caggccgcgc cgggaatgat ggtcatgctt gtgctgcttg
     1021 agatgctcag taaggtccat aatacgcttg gtcagcaggg ccacctgcgc ctcaggagat
     1081 ccggtgtctc ccccacgcag accgtattcg gccaggattt cgctcttctg tgcggtggac
     1141 agcgccacgg gttgatcttc tcctgtcgtc tcgtaccgtg cgagccgcga atcacgcggc
     1201 ttgcatcgac gcactatgta tcgacaccgt ccgaccgcca cggaccgcag ccggatcctc
     1261 gtcgagatta ccagtggtcc agccggcgtc cggcggcccc ctcgatcacc cagcactgtg
     1321 gtcccggctt atccccatcc cccatcgagt tcagctccga tgtccgggtc agggccagcc
     1381 gcccgccgca acaatccggc gagcagcggg aattcctctc gaagcaggcg cgccgcggcg
     1441 gccaactggg cctgtggcac catcgcacgc agcgccggga cgagcacgtc ctcaccgtgc
     1501 tcgccgaccg gcagttcctc cctaccgccg gctgacaaac cacccctacc gccggctgac
     1561 aaaccaccgg gcgaccggct gacggtgggc cggctgacgg tgggccgtga gtcgcggacc
     1621 tgctcgagcg cttcccggat cgcggctggg tcaccggagg cgacatcagg ggtgagtact
     1681 cgccgctcca acatgaccat ccgggccagt accgcgggat tgccgatctt cgctcggcgt
     1741 ccgctcatca gctggctgag catcggcgca ctcagcccga ggacctcagc caactgcgcc
     1801 tgggagcaat cgaaggcgac cacgaggcgg cggacccgat cgccgagcga ctccccgtac
     1861 cattcccgct gtagggccac gttgcgcgcg acggcgagct gctcgtccac cggactcccc
     1921 ttccgtgccc gtactggcat cctgccagca ggagcaggtc ttgggggccg cgatcggcca
     1981 tcaccttcgc tggtcgaaga ccgtgcgagt tcgcgccaca tcgtcgtcga tctgggccac
     2041 cagttgctcg gagctgtcga aacggcacat gccgcgcagt cgttcgacga aatccagcgc
     2101 cacccgctcg ccgtaaaggt cctcgtccag atcgagaacg aatgcctcca cccggcgttc
     2161 ccgaccggag aaggtcgggt tcgtaccgat cgagactgcc gccgccagct cccggccacg
     2221 gtgcacgaat cggcacgcgt acaccccgtc tgcggggatt gcggcgtatc tcggggtcga
     2281 caagttcgcg gtcgggtaac ccagactgcg accccgctga tctccgcgga ccacgatccc
     2341 ttccacccgg tgcggacggc ccaacgccgc actcgcggcg gccacgtctc cggcgtcgat
     2401 gcaggagcgg atgtaggtgg aggaaaatgt tagctcaccg tgggacagta gccccaggcc
     2461 ttcagcggtg aagccgaacc gccggcccag ctcccgcagc agctcgatgt tcccggccgc
     2521 cttgtgcccg aagctgaaat tgtcacccac cacgacatcc gccacgtgca atcgctcgac
     2581 gagcaccgcg tggacgaact cgtcggccgg catccgggag agctcggcgg tgaacggaag
     2641 cacgaaaaac acctcgatgc cccgctgttc caccagctcc gcccgccggt gcagggtggt
     2701 gagctgggcg ggatggctgc cgggtcggac cacctccgaa ggatgcgggt cgaaggtcat
     2761 cagcacgctg ggaacgtcca tctcccgggc gcgcgcaacg gcatggtcga ccagctggac
     2821 atgaccgcgg tgcagcccgt cgaagactcc gatggtgacg acgctgcggc cccatccgtt
     2881 cgggatcgcc tcgagtccac gccagcgctg cacggacgat gagactaacc ggtcactcac
     2941 cgacccggtc actcaccggc agggcgcaac accaggatcg gacgggcctg gccgtcacgc
     3001 tcagcgagca gtgcgatggc ctcgccgtta gagctgatcg cggcgtgcgt tccggtcagc
     3061 ccgagggcgg gcaacgaccc accatgagcc aatatccgga cctgctggcg gtctacggcg
     3121 cggtgcggga atgcctgagt caccacctcg tccagttccg cgcacaggcc gggggcactt
     3181 gtcagcccgt cgaaagtgcg ggcgacgctc agatcgtagg ggccaacccg ggtgcgtcgc
     3241 agggcggtga gatgtccgcc gaccccgagc gcggcgccta ggtccctggc cagtgcccgg
     3301 acgtaggtgc caccgctgca ctccaccagc acatcgagat cggtgacggc ctcgccgcgg
     3361 cgcagaccga ggagctcgaa ccgggacacc accaccggac gggggctcaa tagcacctgc
     3421 tcaccagcgc gggccagcgc gtaggcccgt ttaccgtcga tcttgaccgc gctgaccgtg
     3481 ctgggcacct gctcgatggg accgcgcagg cgtgccatgg cggcgaggat ttcctgctcg
     3541 tccagcgtgg acgcgtcagc gccgccggtg ggctcgccct cggcgtcgtc ggtgctggtg
     3601 gagcggccga gccgagccgt ggcctggtag accttgggct ccagcgggag atgcccgagc
     3661 agcttggtgg cgcgttgcac cccgcagacc aggacgccag tggccatcgg gtccagcgtg
     3721 ccggcgtgtc cgatccggcg ggtgcgcaac agcctgcgca gccgggagat cacatcatgc
     3781 gaggtcagtc cggcaggttt gtccaccacc acgaggccgc cgagggccag tgtcgccgcg
     3841 ctgctcattt gtccgctgcg tcgaacaacg gcagccccag gcaactccga ccgacgaagt
     3901 catacaaggc gtcggtggta ggagccatca cccgggctgc gagagcgtcg cggaacagcc
     3961 gctccacgcc gagttcctta cggaacgcgg cgccgccgca caaccgcagc accccgtcag
     4021 cgacctcggc ggccgcctct gcggcaacgg ccttgacttc cagcgttcga agcgtcgcat
     4081 catcgcggcc tgtgctcagg gccgcgagcg tgtcacgtaa aaacgcccga accccatccg
     4141 tgcagacacg caaccgggcg aacgcggccc gggagaccgg ctgctcgacc agcgtccggt
     4201 cgagatgctg gaggcggctg cgagcgagat gcgcgccggc ttcggcaacc agcgcctcca
     4261 tgatgccgag agacagcgcc gcgttgagga ccaggaagtg aggcagcgcg gtggccagtg
     4321 cgatatccag ccccgctccg tcgtccccga gccgggcact cgccggtacc accacgccca
     4381 cggcggagac cgggctggac gcattgccgc gcaagcccag cccgtcgaac ttgcccgcca
     4441 cgcgcaaccc ttggacattg ctcggcacca gccagagtgt catgccacca tcacctgcta
     4501 gcgatcggct cgaccagacg tagctgtcgg cttggccggc cgaggtcacc caactcttgc
     4561 gggcatcgag ttgcacggtg tcgccctcgc cgattgttgc cgtgccgagt ggcgcccaga
     4621 agtgactccg ggagccgacc tcggaaaagg cgaagctgct caggtgctca ccgcgggcga
     4681 tcgcgcgacg gacatcgtgt ggcccgtggg cttcgatgac gggcacggcg gcgtagtgca
     4741 tgagtagcac catcgccgtc gaggcgcacc gggcgcccac cgattcgacg acctgcgcgg
     4801 cctccgcgag tgatccgcca ccaccgccga cttggggtgc gctgatcagg ccgagcagcc
     4861 cggcgtcccc gagggcctgc acactgtccc gcgggaaggt cccgcttcgg tcgatctcgg
     4921 ctgcctgcgg gcccaccgtg cgctcgatga cggccgacag caccgactca tagcccgttg
     4981 ctgtcgtcgg aaattccgga gccagaccca tgacgttctc ccaggtttta taggcacggt
     5041 ctcaaaggca cggttccaag cgagatcttg accttactga accggaagaa ggatcgggat
     5101 gatgtggtca cgcaatgggc gcgcggccga gggcggcgcg caagcggtcc aggacgtcct
     5161 cggcggtgcc ctctgtggca aaaccggcgg cgaggcggtg gccaccaccg ccgagctcgg
     5221 tcgcggcggc ggagacgtcg agacgctgct tggcacgcag cgacaccgac caccgatcag
     5281 gaccggtctc cttgagcacc gcggcaacct cagcctcgga ggtggtccgg acgagatcca
     5341 cgacgctctc gacctcctca ctgcgcaaac cctccgcgtc agccagccgc acggcggtat
     5401 gcaccagtcc gcatccctgt gccgaagcgg gctcaagtcg cgcgcgaccg agcaccgttg
     5461 ccagcatggc tagccacccg aacggatgcg tgtccagcaa ctcgcgggta gtggcgtctg
     5521 gatcaacccc cgcggccagc aagcgggcgg cgagcgcgtg ggtccccggg tcagcccgcc
     5581 gaaaacagct ggtgtcggtg actacgccag catagaggca gcgcgcgatc ggctcatcca
     5641 gcgctatccc cagtgcatcg agtaggtgaa gcacgagcac ggcggtggcc ttcgcgccgg
     5701 tgtccactag ctgatgggta ccgaacccat cgttggtggt gtggtgatcg atcaccagca
     5761 ccgcgccggc tgtatccacc cggtcggaga ggcagcccag ccgcccccgg ctcgcggtgt
     5821 ccagagccac cagcagctcc ggatgtgtgg gcacctcatc cggcggcacg atgagatcag
     5881 caacgtccaa cccgcgcaat gactccgggg gctgagcagg ctcgccaaaa ctcacccgca
     5941 cccgcgcccc ccgctgctga agtgccagtc caagcgccaa cgcgctgccc agcgcgtcgg
     6001 catcaggctg aacatgggca accagcgtga cgtcgcgggc ctgagccagc agcgccgcag
     6061 cggcgcgcag ctcatccccg tgagtggcgt tgggtgctat aacaccgttt cccactcacg
     6121 gctccgcttg gcggtacggg tcgggctcac cggcgggaga cgcggctgcc gcgatgcggg
     6181 caacctccgc gtcggcgtcg tgagcctgag ccagcaactc gtcgatgcgg cgcgcgccat
     6241 cgggcaactc gtcgcaacgg aaggtcagag tgggggtgaa ccggacaccg gtcgcgcggc
     6301 cgaccaagga ccgcaacaca ccggtggcgc tggccagcgc agcagccgcc ccggcggtgt
     6361 caggcggggc gtcgaccgtc tcaccgagca ccgtgtagta gaccgtcgcg tcccgaaggt
     6421 ccccggtgac cttcacgtcg gtgatcgtca ccatggtcag ccgggggtcc ttaacctcgt
     6481 gctccagacc ggaggcgacg atcttggcaa tccgtttggc gagccggcgg gcccgtgctg
     6541 ggtcggccat cggaggttct cctcgaatgt tcgggtcggt gctggggcaa acctcgatga
     6601 ccccacgcta gtcatcgtcc ggacctagcg ttcggtggcg cgcggccaac agctccagtt
     6661 cgggccgtcc ggctacgagc cgctcgcatg cttcgagcac gtcgcggacg tgagcgccgt
     6721 cggccgcaat ggtggccacc ccgatcagtg cccggcggtg tagatccaga tggccagcct
     6781 cggccgcagc gacctcgaag cgcctacgga gctcagcgat caccggccga accagggacc
     6841 gcttctgctt cagggaatgg acgtcaccga acatcacgtc cagctcgacc acaccgacgt
     6901 acaccgccac accaccgtgg ttggtagctg ttgaagaccc gccatcgctg gggttggtgg
     6961 cagtttctag ggccaccaac cccagcgatg gtcaggtgcg gggcttctcg cgcagctcgt
     7021 aggtctcgat ctcatcgccg acccgcaggt cgtggtacga cgagagcgtg aggccacact
     7081 cgaaaccctc gcggaccgag gacgcatcat ctttgaaccg gcgcagtgac gacactgtga
     7141 aatcctcacg gacgaccacg ttgtcccgaa gcaaccgggc cttggcgttg cgccggatct
     7201 ccccggaggt gaccatgcag ccggcgatgg tgccgacctt ggaggaccgg aacacctcgc
     7261 ggacctcggc acggcccagc gacacctcct cgtagatcgg tttgagcatg cccttgaggg
     7321 cctgctcgat gtcttcgata gcctggtaga tcaccgagta gtagcgaatc tcaacaccct
     7381 cgcggttggc cagtgcggtg gccttaccgt ccgcccgcac gttgaacccg agcacgacgg
     7441 tgttgtccgc gatggcgagg ttgatatcgc tctcggtgat tccaccgacg ccacgggaga
     7501 tgacccgcag ctccacctcg tcgcccacat cgatcttcag cagagcgtcc tccagcgcct
     7561 ccacggtgcc ggagttatct cccttgagga tcaggttgag ctcgctggtc tccttgagcg
     7621 cggcgtccag gtcttccagg ctgacccggc gacggcgggt ggcgagctct gcgttgcgct
     7681 cccgggttcg cctgcggtcg gcgatctggc gagcgatgcg gtcctcgtca acgacgagga
     7741 agttatcgcc ggcccccggc accgaggtga acccgtgcac ctgcaccggc cgcgagggca
     7801 gcgcctcgat gacgtcatcg ccgtgctcat cgaccatcct acggaccctg ccgtaggcat
     7861 cgccggcgac gaccgagtca ccgacccgca gcgtgccccg ctgcaccaga acggtggcca
     7921 ccggaccacg acctcggtcc aggtgggcct cgatcgccac cccttgggcc tccatctccg
     7981 ggttggcccg caggtccagc gaggcatccg cggtcagcag aatcgcctcg agcagcgagt
     8041 cgatgttggt gccctccttg gcggagatgt cgacgaacat ggtgtcgccg ccgtactcct
     8101 cgggcaccag cccgtactcg gtgagctggc cgcggatccg ggtcggatcc gcgttctcct
     8161 tgtcgatctt gttgaccgcg accacgaccg gcacgccggc cgccttcgca tggttgatcg
     8221 cctctaccgt ctggggcatg acgccgtcgt cagcggctac caccagcacc gcgatatcag
     8281 tcgagcgcgc accacgggcc cgcatggccg tgaaggcctc gtggcccggg gtgtcgataa
     8341 aggtgatcag ccgttccacg ccgtcgagtt ccgtggcgac ttggtaggca ccgatgtgct
     8401 gggtgatccc gccggcctcg ccgcccatca cgttggcttt gcggatggag tccagcaggc
     8461 gggtcttgcc gtggtcaacg tgacccatga cggtaaccac cggcggccgg aacgcgaggt
     8521 cgtcctcgtc accggagtcc tcgccataag acaggtcgaa cgactccagc agttcgcgat
     8581 cctcgtcctc gggactgacg acctggatcc ggtagttcat ctcctgaccc agcagctcca
     8641 gcacgtcgtc ggagaccgac tgggttgccg tcaccatctc accgaggtgg aacaacgcct
     8701 ggaccagtgc ggccgggttg gcgtcgatct tctcggcgaa atcggtgagc gaggagccgc
     8761 gacgcaaccg gacggtctcg ccggtgccgc ggggcagccg gacgccaccg accgacggcg
     8821 cctgcatgtt gtcgaattcc tgacgcttct ggcgcttgga ctttcgtccc ttgcgcgcgg
     8881 gaccgccagg acgtccgaag gcaccagccg cgccgccgcg accgcgaccg cccccaccgg
     8941 ggcgcgccgc tcctccgcgg aaaccgccac cggcgggagc accggcgccc gcgggcccac
     9001 cgggagcacc tccgctgcgg aaaccgcctc cggcgccgcc accactacgt ccaccgggac
     9061 cgccgcggct gccaccgggg ccgccaggtc cgccgcgtcc gccgccatcg gcaccagctc
     9121 gccccggtcg gcccggcgcc gctcctgggc ccggcggccg gggcggcatc atgccgggat
     9181 tgggccgcgg tccgccgcta ccgggcgggc cggtgcggcc agaggtcggc cggttggtac
     9241 cgcccggacg cggtggcatg ttgctcggcc cggcgggact ggccggtggg ccgggccgct
     9301 ggccaggcga acgcggtggt gcagcactac ccacaccgaa cgggttgttt ccaacccgcg
     9361 gcgagcgcgg acccggcttc ggagaccggg gacgaggcgc accgggagaa gcaccttcgt
     9421 caggtcgcgg gctcgggcgt tgctcggtcg ggggacgcgg tgacgccacc cggtgttccg
     9481 ccgcgggccg gttcggctca gccgccgcgg gcggggggga cgcaggttca ctgatagggg
     9541 gactcgcggg cgctggccgg cgctctaccg gcgtgggacg ctgtggaatc cccagcggag
     9601 tagctcccgg agcggcccct ggacgcgcac tgttaggcgc agtctccggc cggcgggtgg
     9661 gtgaaggtac cgggctaggc ttcgcagtcg cttcgccacc catggcgggg gatgtaccgc
     9721 cgccagcatt gcttgggcgg ccgctgaccg atgcaccgtt gggggccgaa gccttgccgg
     9781 tatcggatgg gaacgagtcg cgaagcttgc gggcgaccgg tgcctccacc gttgaggagg
     9841 cagacttcac atactcaccg agatcggcga gttttttgag tacatcttta ctagtgacac
     9901 cgagctcttt cgcgagctcg tgcacgcggg ccttgcctgc cactgctctc ctcactcatg
     9961 gagccggcgg cattcccgct cgaccccgtt actagtgcat gtccatcgct gtcagagctt
    10021 cacgactgcg ggtacatttc ggaatcgacc tgctctctgc gttgaccacg cgccggggcg
    10081 gtcccgggcg gggtatgtcc ccggcgcacc gaggacctat taccgtctcc gaacagctca
    10141 cgtgatgaaa gcgtgtaccg cggcggtgtc gag
//
LOCUS       DASVXZ010000765         6201 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_759758, whole genome shotgun sequence.
ACCESSION   DASVXZ010000765 DASVXZ010000000
VERSION     DASVXZ010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6201
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759758"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VF788_16320"
     CDS             <1..407
                     /locus_tag="VF788_16320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935712.1"
                     /translation="SGNVVRPEAGASVIVAAQRWGHRDTPSAAIPLLGPAGPPSPSSG
                     GAALAGSGASAARPDRLAALPPGFSVTGRPRSGGEPVYVPSAVGDAPGAPRPADMEEV
                     AGRPVWVVYRPSAGLELGTERVDSADGSRTTD"
     gene            423..1007
                     /locus_tag="VF788_16325"
     CDS             423..1007
                     /locus_tag="VF788_16325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935713.1"
                     /translation="MPIRTHRGRAAVYRKFWGWPVRSPRHLTGTTLVLVVIAISVSLV
                     LPDKHRGTQARAMPPGSSRASSSAAVSTPPPADAGGSRAPRPPAPSGPAPAAALTVAH
                     SWVNAFLTVPKGITSERWVEQLRPFTTDELFPELRSIDPANVPAAQITEAPRTVSVSA
                     GSAEVDVPTTGVVVRLLLVSTPAGWRVASYERAG"
     gene            1011..2015
                     /locus_tag="VF788_16330"
     CDS             1011..2015
                     /locus_tag="VF788_16330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEX8935714.1"
                     /translation="MRRWLVGLLVLGLLGGLIAVAAISTLLGVVGSGDFMFGAPCGSV
                     LASTDPREAPRVAVQVSDLDPEQRAIVELIIAIGKQRKLPPRAWQIAIQAGMTESRLH
                     NLHYGDRDSLGIFQMRPSQGWGTAAQVTDPVYEINKFYDVLLTVPGWETQRPGDSAQD
                     IERSAFPARYHQWEPLAVNVIGVVGGDVTEYVRASCTTPLPAASEVAGRAMQYALGEV
                     GKPYVWGATGPNAYDCSGLMLRAYQSAGVTLPRVAREQYWAGAQLPVRQAQPGDLLFW
                     GYDTSNPDSIHHVAMYLGNGRMVEAANQTVPLRQRAVSFDEHELMPLAVRPGVPVAKA
                     "
     gene            2025..2456
                     /locus_tag="VF788_16335"
     CDS             2025..2456
                     /locus_tag="VF788_16335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935715.1"
                     /translation="MTLYASDPISRPAGQPASASPLRDHLEPAKLGVDEGYVVLPRSL
                     AEEMPLPWQQQMAYLIDELHKTYSELPWPVYRVVPSRVERLVDLDEAQLAEAGYLLEI
                     DGSGELVYRDRNDAVVADPQSTEVLVPCLDPMRSRPPAISP"
     gene            complement(2477..3340)
                     /gene="panB"
                     /locus_tag="VF788_16340"
     CDS             complement(2477..3340)
                     /gene="panB"
                     /locus_tag="VF788_16340"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEX8935716.1"
                     /translation="MTAVATQPALYGGPVGPDHKVRRVRVQDLIAAKHRREKWAMLTA
                     YDYSTAALLDAAGIPVLLIGDSAANVVYGYDTTVPVTVDELLPLVRGVVRGARRALVI
                     ADLPFGSYQSSPAQALETAARFLKEAGAHAVKLEGGHQVIPQVEALVAAGVPVMAHLG
                     LTPQSVHALSGYQVQGRGENGERMVEDAKALEAAGAFAIVLEVVPAELASRITAASTV
                     PTIGIGAGPDCDAQVMVWQDMAAFHPAGGPVPRFVKTYAKLGNELREAASHFAEEVRS
                     GSYPGPEHSYH"
     gene            complement(3579..5312)
                     /locus_tag="VF788_16345"
     CDS             complement(3579..5312)
                     /locus_tag="VF788_16345"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEX8935717.1"
                     /translation="MPQLRLALAQVNPCVGDIAGNARMLATRCREAAAAGAHIVVFGE
                     MALTGYPVEDLALRESFVTASVQALQALAVQLADEGCAELATVVGYLDSDVHGPRDAA
                     AVLHRGRVVARQFKHHLPNYGVFDERRYFVAGTTLTVSRLHGLEIGMVICEDIWQAGG
                     PITALAHAGVDLVVAPNASPYERKKDDTRFALVARRATEAGVPLAYANLVGAQDELVF
                     DGDSMLVGGRGELLGRAPQFSEQLLVYDLALPGRSGRSVGTYAGLDVSRVILTEDPLP
                     AYRPAPAAPLPEPLSDEAEVWGALVTGLRDYTRKNGFRSVVLGLSGGIDSAVCAALAV
                     DALGADAVYGISMPSSYSSEHSRTDAADLAERTGLHYQIQPIGGMAEVFVRQLDLTGI
                     AEENVQARCRGVTLMALSNQHGHLVLATGNKSELAVGYSTIYGDAVGGFAPIKDVPKT
                     VVWALARWRNAVAEKRGESPPIPPNSIRKPPSAELRPGQLDSDSLPDYAVLDKVLDDY
                     VEGDRGFADLVAAGFPPELVEQIVRMVDAAEYKRRQYPPGTKITLKAFGRDRRLPITN
                     RWRERSPSLDA"
     gene            5378..>6201
                     /locus_tag="VF788_16350"
     CDS             5378..>6201
                     /locus_tag="VF788_16350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8935718.1"
                     /translation="MSRLGRLSAVLAIMCVLCGCAEAAGSRLSDSDWGPVPNSGPVPY
                     PHSATGPVPVGLERFYSQRVSWGGCRPFATTDRDRESFENPMFQCARVDVPLDYANPQ
                     GRTARLGLIRRPADSQPERLGSLLVNPGGPGASGMSAVASLAKAVNGTELGRRFDLVG
                     FDPRGVGASEPKIVCRNTQEEDAERLDLDLDTSPAGVARTEDENRAYAALCTQRVGKD
                     MLANAGTRDVARDLDVMRSALGDMKLTFLGYSYGTRIGTSYAEQFPGNVRAMVLDGA"
BASE COUNT          979 a         2082 c         2099 g         1041 t
ORIGIN      
        1 tatccggcaa cgtggtgcgt ccggaagccg gtgcctcggt catcgtcgcg gcacagcggt
       61 gggggcaccg tgacacccct tcggcggcga tcccgctact cggtcctgct ggtcccccca
      121 gcccgagctc cggtggcgca gcgctagccg gatcgggcgc gagcgcggcg cggccagatc
      181 ggttggctgc gctgccgcct ggattcagtg tgaccggccg ccctcgctct ggtggggagc
      241 cggtgtacgt gccttccgcg gtcggcgacg cccccggtgc accgcgacca gccgatatgg
      301 aagaggtggc tgggcgtccc gtgtgggtgg tctaccgacc ctccgctggc cttgagttgg
      361 gcacggagcg tgtggacagc gctgatggtt cacggacgac ggactgaccg gggaggggca
      421 cagtgccgat ccggacccac cgcggccgcg cggccgtcta tcgcaagttc tggggctggc
      481 cggtgcgttc tccgaggcat ctcaccggta cgacgctggt actggtggtg attgccatca
      541 gtgtttctct ggtactgcct gataagcacc ggggtaccca ggcccgcgca atgccgccgg
      601 gcagttctcg ggccagctcc tctgctgcgg tctcaactcc gccaccggcc gacgccggag
      661 gctcccgggc gcctcgtccc ccggcgccga gcggcccagc accggccgcc gcgctcaccg
      721 tcgcgcactc ctgggtgaat gcgtttctca ccgtcccgaa gggcatcacc tcggagagat
      781 gggtggagca gctacggccc ttcaccaccg acgagctgtt ccccgaactg cggtcgatcg
      841 acccggccaa cgtaccggca gcgcaaatca ccgaggcacc ccggacggtc agcgtgagcg
      901 ctggttcggc cgaggtggac gtacccacca cgggggtggt ggtacgtttg ctgctggtct
      961 ccactcctgc tggctggcgg gtcgccagtt acgagcgggc aggttaagcc atgcggcgat
     1021 ggctggtcgg cttgctggtc ctcggcttgc tcggcgggct cattgcggtg gccgcgatct
     1081 ccacgttgct gggtgtggtc ggttcaggtg atttcatgtt cggcgcaccg tgcggctcgg
     1141 tgctggcctc gaccgatccg cgggaagcgc cacgggtcgc tgttcaggtc agcgaccttg
     1201 atccggagca acgagccatc gtcgagctga tcattgcgat cggtaagcaa cgcaagctgc
     1261 cgccgcgcgc ctggcagatc gccatccaag cggggatgac cgagtcccgg ctgcacaacc
     1321 tgcactacgg tgaccgcgat tcgctgggca tcttccagat gcgcccctcc cagggctggg
     1381 gtaccgcggc ccaggtcacc gatccggtct acgagatcaa caagttttac gacgtgctgc
     1441 tgacggtgcc cggctgggaa acccagcggc ccggcgattc ggcgcaggat atcgagcgat
     1501 cagctttccc cgcgcgttac caccaatggg aaccgctggc ggtcaatgtg atcggcgtcg
     1561 tgggtgggga tgtcaccgag tatgtccgcg cctcgtgcac cacgcctctt ccggcggctt
     1621 ccgaggtggc cgggcgagcg atgcagtacg cgctgggtga agtcggtaaa ccctacgtct
     1681 ggggtgctac cgggcccaac gcctatgact gctctgggct gatgttgcgc gcttaccagt
     1741 cggccggggt cacgctgccc cgggtggcgc gcgagcagta ctgggccggt gcccagttgc
     1801 cggtgcgcca agcgcaacca ggagatttgc tgttctgggg ctatgacacg tcgaacccgg
     1861 acagcatcca ccacgtggcg atgtatttgg gaaacggccg catggtcgag gcggcgaacc
     1921 aaacagtgcc cttgcggcag agagccgtga gtttcgacga gcatgaattg atgccgctcg
     1981 cagtccggcc cggggtgccg gtcgcgaagg cctgacatcc ggaggtgacg ttgtacgcat
     2041 cagacccgat ctcacgaccg gccggtcagc cggcttcggc cagcccgttg agggatcatc
     2101 ttgagccggc caagctgggg gtcgacgagg ggtatgtcgt gttgccccgg tcgctggctg
     2161 aggagatgcc cttgccctgg cagcagcaga tggcctacct catcgatgag ctgcacaaga
     2221 cctatagcga actgccgtgg cccgtctacc gggtggtgcc cagccgtgtc gaacgcctgg
     2281 tcgatctgga cgaggcccag ctcgccgagg ctggctacct gctcgaaatc gacggcagcg
     2341 gcgagctggt ctaccgggat cgaaacgacg ccgtagtggc tgaccctcaa tccacagaag
     2401 tcctggttcc gtgcctggac ccgatgcgca gccgcccacc ggcgattagc ccctgactcc
     2461 ccgggggagg ggagggtcag tggtaggagt gttctggacc cgggtacgag cctgagcgga
     2521 cctcctcggc gaaatggctc gcggcctccc gcagctcatt cccgagcttg gcgtaggtct
     2581 tgacgaacct tggtaccggg ccaccggctg ggtggaaagc cgccatgtcc tgccacacca
     2641 tcacctgcgc gtcgcagtcc ggccccgcgc cgataccgat cgtgggcacg gtactggcgg
     2701 cggtgatccg gctggccagc tcagcgggca ccacctccaa gacgatggcg aaagcaccgg
     2761 ccgcttccag cgccttggcg tcctcgacca tgcgctcacc gttctcgccg cgcccctgca
     2821 cctggtagcc gcttagcgcg tgcaccgact gcggggtgag cccgaggtgg gccataaccg
     2881 gtacgcccgc cgcgaccagc gcctcaacct ggggaatcac ctgatggccg ccctccagtt
     2941 tcactgcatg cgcgccggct tctttcagga aacgggccgc ggtttccagc gcctgagccg
     3001 gggaggactg gtaggagccg aagggcagat cggcgatgac cagcgcccgg cgagccccgc
     3061 ggaccactcc gcgtaccagg ggcaacagtt cgtcgacggt cactggcacc gtcgtgtcgt
     3121 agccatagac cacattggcc gccgagtcgc cgatcaacag cacgggaatt ccggcggcgt
     3181 cgagtagggc ggccgtggag tagtcatacg cggtgagcat cgcccacttc tcgcggcggt
     3241 gtttggccgc gatgagatcc tggactcgca ctcgcctgac cttgtgatcg ggacccaccg
     3301 gtccgccgta cagcgcaggt tgggtcgcaa ctgcggtcat cattgaccgt cctccctcga
     3361 ggccggcttg gtcgccggtc cccgggttat gccggatcgc ttatgtcaga agcctgacac
     3421 taaagacggg acccagcatt agcgtgcgac gagactcaca gccacccgtc caagcgtcga
     3481 gaaggaccga tccatctgta tcggtcctct tgacctcgcc ggagtccacc ctggtacgtg
     3541 tgcgatcacg caacgtcgtc ccggcgttga ggtcttgctc aggcatcgag cgacggggat
     3601 cgttcacgcc agcggttggt gatcggcagc cggcggtccc ggccgaaggc cttcaaggtt
     3661 attttcgtgc cgggtgggta ctgcctgcgt ttgtactctg cggcgtcgac catccgcacg
     3721 atctgctcga ccagctcggg cgggaaaccc gccgcgacca ggtcagcgaa cccacggtca
     3781 ccttccacgt agtcatcgag caccttgtcc aggaccgcgt agtcgggcag cgagtcgctg
     3841 tccagctgac ctgggcggag ttcagctgac ggtggcttgc ggatcgagtt cggcgggatc
     3901 ggcggggact cgcctcgctt ctcggccacc gcgttgcgcc accgggccaa cgcccacact
     3961 acggtcttgg ggacgtcctt gatcggtgcg aagcccccga ccgcgtcacc gtagatcgtc
     4021 gagtacccca ccgcgagctc ggacttgttt cccgtggcca gcaccagatg accgtgctgg
     4081 ttggacagtg ccatcagggt caccccgcgg cagcgggcct gcacgttctc ctcagcgatt
     4141 ccggtcagat cgagctgacg cacgaaaacc tcggccatgc cgccgatcgg ctggatctgg
     4201 tagtgcagcc cagtgcgctc ggcaaggtcg gcggcatcgg tccgggagtg ctcggaggag
     4261 tacgacgagg gcatcgagat cccgtacacc gcatccgcgc ccagcgcgtc caccgcgagc
     4321 gcggcgcaca ccgcggagtc gatcccgccg gagaggccca gcaccaccga gcggaacccg
     4381 ttcttgcggg tgtagtcgcg caagccggtc accagcgcgc cccacacctc ggcttcatcg
     4441 gacagcggct ccggcagggg cgctgcgggc gcaggtcggt acgccggcag gggatcctcg
     4501 gtgaggatga ctcggctgac gtcgagcccg gcgtacgtac ccaccgacct gcccgaccgg
     4561 ccgggcaaag ccaggtcgta caccaggagt tgctcggaaa actgtggtgc ccgcccgagc
     4621 agctcgcccc gcccgccgac cagcatcgag tcgccgtcga aaaccagctc gtcctgagct
     4681 cccaccaggt tggcgtaggc cagcggcaca ccagcctcgg tagcacgccg ggccaccagc
     4741 gcgaaccggg tgtcgtcctt tttacgctcg tagggggagg cgttgggcgc gaccaccagg
     4801 tccaccccag cgtgggccag agcggtgatc gggccaccgg cttgccagat gtcctcgcag
     4861 atcaccatcc cgatctccaa gccgtgcagc cgggacacgg tcaacgtggt gccggcgacg
     4921 aagtagcggc gttcgtcgaa cactccgtaa ttgggcaggt ggtgcttgaa ctgccgggcg
     4981 acgacccgcc cgcggtgcaa caccgccgcg gcgtcacgcg gaccgtggac gtccgagtcc
     5041 aggtatccga cgacggtggc cagctccgcg caaccctcgt cggccagctg caccgccagt
     5101 gcctgaagtg cctgaaccga ggcggtgacg aaggactccc gcagcgctag atcttctacc
     5161 gggtagccgg tcagcgccat ctcgccgaag accacgatgt gcgcgccggc ggcggcggct
     5221 tcgcggcagc gcgtggcgag catcctggca ttgcccgcga tgtcacccac acagggattc
     5281 acctgggcca gggcgagacg caactgcggc atgctcacat catccacgca gagtgccccc
     5341 gctgagggtt tctgcagcac tcactaggat cgcgcggatg tcacgcctgg ggcgcttgag
     5401 cgcagtattg gcgatcatgt gcgtcctctg cggctgcgcc gaggccgcag gcagccggtt
     5461 gtccgactcc gactgggggc cggtgccgaa ctccggaccg gtaccgtacc cgcacagcgc
     5521 caccggcccg gtgcccgtcg ggcttgagcg gttctacagc cagcgcgtga gctggggcgg
     5581 ctgcaggccc tttgccacca ctgaccgtga ccgagaatcc tttgagaacc ctatgttcca
     5641 gtgcgctcgg gtggacgtgc cgctggacta cgccaaccca caagggcgca cggctcggct
     5701 cgggctgatc cgccgccccg ccgatagcca gccggagcgg ctgggttccc tcctggtcaa
     5761 tcccggtggc cccggggcgt ccggaatgag cgcggtggcg tccctggcca aggcggtcaa
     5821 cggtactgaa ctgggccggc gtttcgatct ggtcggtttc gatccccgag gggtgggcgc
     5881 cagcgaacct aagatcgtgt gccggaacac tcaggaagag gatgccgagc ggctcgatct
     5941 cgacctggac acctcgccgg ccggggttgc gcggaccgag gatgagaacc gggcgtacgc
     6001 cgcgctgtgt actcaacggg tcggcaagga catgctcgcg aatgccggca ccagggatgt
     6061 cgcgcgggac ttggacgtga tgcgctcggc gctgggcgat atgaagctca cctttctcgg
     6121 ctattcctac ggcacccgga tcggcacttc ttacgcggag cagttcccgg gcaacgtgcg
     6181 ggcgatggtg ctcgacggcg c
//
LOCUS       DASVXZ010000766         7001 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1788748, whole genome shotgun sequence.
ACCESSION   DASVXZ010000766 DASVXZ010000000
VERSION     DASVXZ010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7001
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1788748"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VF788_16355"
     CDS             complement(<1..396)
                     /locus_tag="VF788_16355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016449231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8935719.1"
                     /translation="MLALWLGLSPAVAITGGAAGAGAVPAGMVVRSGRVKVRGQDMPN
                     AIPDVGPHVALRASSRARTGYDAGPAGRVGATTELVGRRPGQLSGGQQRRVAIGRTLS
                     RQPALLLLDEPTAGLDNRLRTELSALLRTL"
     gene            complement(707..2446)
                     /locus_tag="VF788_16360"
     CDS             complement(707..2446)
                     /locus_tag="VF788_16360"
                     /inference="COORDINATES: protein motif:HMM:NF037653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935720.1"
                     /translation="MSSAARSVDIAGSRLTTDVPVADGAAKVDPLLRDQLSNLRGLLV
                     LSMVMTESTDERQILDLATRAVPSLGRCHVAGVRLVNSGWHATSPPCAGPDLRVAVGA
                     QLHQLGGGGGMLAIQNEQWAWAFPLRGLEGPIGHLVVGAPEEPSGSEQFLLRVLAQQT
                     GVALANAWLHTKERATAQQLAAANTALAQTIRALERSTAIHDQLTRVAVSGEGQEGIA
                     RAVHKLTGFPVAVEDRYGNLRAWAGPNRPEPYPKDPQARREQMLRRALREDRPIREAG
                     RLLAIARPREDVLGVLVLVDPGGTAGEQELVALEHGATVLAMELARLRSLADTELRVR
                     RELVDHLLGGGDEEGALALAQMLDYDLERPHQVLVVEGRGRRRDEDAFFHAVRRAARD
                     VGAGVLLMARGRAIVVLSPTGAPFDRLCGAVLAELGGGTCRIGVGGVCERPSEFPRSY
                     REAQFALKMQAIAKGVAQVVQFDALGVYRLLSEVPDTAGVERFVRSWLGALLDYDARR
                     NSELVDTLTEYLKCGGSYDTAAQSLSVHRNTLKYRLQRIREISGHDLSCPETRFNLQL
                     ATRAWQTLMGLRS"
     gene            complement(2457..3113)
                     /locus_tag="VF788_16365"
     CDS             complement(2457..3113)
                     /locus_tag="VF788_16365"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX8935721.1"
                     /translation="MTHTLELGIPGLRLTAGDHVCAFYRGPGERDEILIPYLRAGLVT
                     GDKCICVVDAVEPRQVLSALGSEAEVNGWISDTQLELRASTEAYLRSGRFCTEEMLAF
                     WEDFVGPAVTGKFTFARSVGEMTWALRQAPGVDELIGYESELNRFLPRYPQVILCLYD
                     LERFGGEIIIDIVKTHPRILLGGMVVDNPNYLEPDEFLAIRSRSAPVDIQHVYDHSAG
                     "
     gene            complement(3239..4627)
                     /locus_tag="VF788_16370"
     CDS             complement(3239..4627)
                     /locus_tag="VF788_16370"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX8935722.1"
                     /translation="MNDDVSALVARARSAQRAIADYSQEQVDELVTAVAWGVARKDRA
                     EALAQLAVDEGGFGNYADKVIKINKRVLGVLRDMRSLRTVGVISEDPERGLVLIAKPV
                     GVVAALIPTTGPDATPPVKTLFALKGRNAIIVAPHPRTKRTTAAVVGYMREACEQVGA
                     PADLVQVISAPSLSATQELMRQADLIVATGGHAMVHAAYSSGTPAYGVGVGNAVHVID
                     ETADLDDAASAIATAKTFDYATSCLADNAVLAETSVYDELLDRLIASGGHLCSDAERS
                     ALQQLMWPRGAGIPALEVIAKPATRIAELAGFTITADRTFLIVREDGVGPEHPFSGEK
                     LSVVLALYRYSGGIEQAVELVNRITDYQGAGHTCGIHTRSDEHVDAVAIGTRTARVLV
                     NQNLNEGAGSPRNRLPFTLSLSCGTWGGNITTENVNARHFVNVTWVSRPVPPQPAEEE
                     ELFATHWARYGK"
     gene            4778..6346
                     /locus_tag="VF788_16375"
     CDS             4778..6346
                     /locus_tag="VF788_16375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8935723.1"
                     /translation="MDIRGKQFNLAEWNNIIEESLANPDFEPLFNLAGDEAVYDAVFV
                     GGGAGGRFGAAYLKAMGGRPLIIDAWPFLGGSCPHQACVPHHLFSDAAAELDLMRWFS
                     DELFFPKFDASRASILQMVKLFVAGRSTAHAFMNWQTKEQLEVEYALNARATIIDRNT
                     VSAGGRTFRGRNLVLGMGARPMYPDISGLTLRGIYDFVSLVEELDYEPTRCVIIGGSK
                     VAMEYGAFFHATGCDTTIVTRSPLMRSRSLHHVDEDLRRYVVEGMRKRGMIIHEGAVP
                     ISINGEHSAESVTVRLAHGEVVDLETDFVFIATGERPNSAHAQEVLGVAVGPTGRVIV
                     DKRMRTTVPNVYAIGDMIDGPMEMFKARKCGVAAARNIMGEHIEFDFAEYPDFLHTTY
                     EVTWVGLTEAEARAEYEEVIIIQMPPYVKGLDSENLPLPCSDRSMLYAFSRPELSGFQ
                     KLVVDGTSRRVLGAHHVGYGAKDAFQYLDYLIHRPEGLTIDELGWMNELFLNPEHFIQ
                     LSRLRAGRQKLVDL"
BASE COUNT         1331 a         2236 c         2130 g         1304 t
ORIGIN      
        1 cagcgtgcgc agcagcgcac tgagctcggt gcgcagccgg ttgtccagcc cagcggtggg
       61 ctcatcgagc aacagcaatg ccggctgccg ggaaagtgtc cgtccgatcg ccacccggcg
      121 ttgctggccg ccagaaagct gaccgggccg gcggcctacc agctcggtgg tagcgccaac
      181 tcggccagca ggacccgcgt cgtatccggt gcgcgctcgc gagctagctc ggagagcaac
      241 gtgcggaccc acatcgggga tggcgttggg catgtcctgc ccacgtacct tgacccgccc
      301 gctgcgcacc accatgcccg cgggtactgc cccggccccg gcagcaccgc cggtaatcgc
      361 cacggccggt gacaagccca gccacagggc aagcaccagg accagccggt tgcctaccac
      421 gaactcgggt aaggccagcg tacggtcgct accgtacgga ggtccttcgt tccgaggtga
      481 gctgggtgac gaactaaccg ctgcaagaca aacgtcacgc tggttacgct cgacgggtgg
      541 tctcatctcg tcaccaggag gatgagacca cctccgcgcg actgccgcag gctccgggga
      601 gggttagcga atacgcggcc aggtcaacaa taactccgcg catggccgtg cgaacggcgt
      661 gttggctcca gagcatgcaa ccctatcgac tgcggagcac gcagcatcag ctgcgcaagc
      721 ccatcaacgt ctgccacgca cgggtggcga gctgtaggtt gaagcgggtt tccgggcagg
      781 acaaatcatg gccggagatt tcccggatgc gttgcaatcg atacttgagc gtattgcggt
      841 gcactgacaa cgactgcgcg gcagtgtcat agcttccgcc gcacttgaga tactcggtaa
      901 gcgtgtcgac cagctcggaa ttcctgcgcg catcgtaatc aaggagcgcg cccagccacg
      961 accggacgaa ccgctcgact cctgcggtgt ccggcacctc agacagtagg cggtacacac
     1021 cgagggcatc gaattggacg acctgagcga cccccttcgc aatagcctgc atcttgaggg
     1081 caaactgcgc ctcccgatac gagcggggga actcactcgg acgctcacac accccgccaa
     1141 ccccgattcg gcacgtgccg ccacccagtt ccgccaggac agcgccgcac agccggtcaa
     1201 acggtgcccc cgtgggagaa agcaccacga tggcacgccc acgggccatg aggaggacac
     1261 cagcgccgac atcacgggct gcccggcgca cagcgtgaaa gaaggcatcc tcatcgcgtc
     1321 gcctaccgcg gccttcgacg acgagtacct gatgaggtcg ttcgaggtcg taatccagca
     1381 tttgggcaag cgcgagagcg ccttcctcgt caccgccacc cagtagatga tcaacgagct
     1441 cccggcgaac tcgcagctcg gtgtcggcca aactgcgcag ccgagccaat tccatcgcga
     1501 gcaccgtggc accgtgctcc aacgcgacca gctcctgctc accggcggtc ccgccggggt
     1561 ccaccaggac gagcacgccc agtacgtctt cccgtggccg ggcgatagcg agcaacctgc
     1621 cggcctcgcg gattggccgg tcctcgcgca gtgcccggcg aagcatctgc tcgcgacggg
     1681 cctgcggatc cttcgggtat ggctcgggcc ggttgggccc agcccacgcc cggagattgc
     1741 cgtaccgatc ctcgacggcg accgggaagc cagtcagctt gtgcactgcc cgagcgatgc
     1801 cctcctggcc ttcaccgctg accgcgacgc gggtcaactg atcgtggatg gcagtggagc
     1861 gttctagcgc ccggattgtt tgcgctagcg cggtgtttgc tgcggccagc tgctgagcgg
     1921 tagcccgctc cttggtatgc agccaggcat tggccagcgc gacaccggtt tgctgggcaa
     1981 ggacccgaag caaaaattgc tcagatcccg acggctcctc cggcgccccc accaccaggt
     2041 gcccaattgg accttcaagc ccgcgcagcg gaaaggccca tgcccactgc tcgttctgga
     2101 tggctagcat gccaccgccg ccacccaatt ggtgcagctg agcaccgact gcgacacgga
     2161 ggtctggccc agcacaagga ggtgaggtcg cgtgccaccc actgttgacc aagcgaacac
     2221 ctgccacgtg acagcgccct aatgacggca ccgctctggt cgccaggtca aggatctgcc
     2281 gttcatccgt gctttcggtc atcaccattg acagcacgag cagcccacgc agattggaaa
     2341 gctggtcacg cagcaacgga tcgacctttg cggccccgtc agcaacagga acgtcggtcg
     2401 tgaggcggct acccgcgata tcgactgacc gcgccgcgga actcatgggt aatggctcac
     2461 cccgcgctgt gatcgtagac atgttggatg tctaccggcg ctgaccgcga tcgaatcgca
     2521 agaaactcgt cgggctcaag gtagttgggg ttatctacca ccattccacc aagcagtatc
     2581 cgagggtgag tcttaacgat gtcaataatg atctcaccac cgaaccgctc caaatcgtag
     2641 agacagagga ttacctgggg atagcggggt agaaaacggt tgagctcgga ttcatatccg
     2701 atgagctcat ctactccagg cgcttgtctc aacgcccagg tcatctcgcc tacggagcga
     2761 gcgaaggtga atttgccggt caccgcagga ccaacaaagt cttcccagaa cgccagcatc
     2821 tcctccgtgc agaaccgccc cgagcgcaga tatgcctcag tggacgcacg caactccagt
     2881 tgcgtatcac taatccaccc gttgacctcc gcctcactgc ccaacgctga tagcacctgc
     2941 cgcggctcga ccgcatccac cacgcagatg cacttgtccc cagtcacgag cccggcccgc
     3001 aagtacggga tgagaatttc gtcacgctca ccgggacccc ggtaaaacgc gcagacgtga
     3061 tctcctgcgg tcagccgcaa gccggggatt ccgagttcca gggtgtgagt cacgctgtac
     3121 tcctcctcgc gcagcgccgc gcgggcccat cccgggtgcc ttcatcacgt tacgcgtcgg
     3181 ttaccagcta gggctagtgg cacaaccggt ctgtgtcttg atccctgcgg gccgtcagct
     3241 acttaccgta gcgggcccaa tgggtggcga acagttcctc ctcttctgcc ggctggggcg
     3301 gtaccggccg ggatacccag gtgacattga cgaaatgacg ggcgttgacg ttttcggtag
     3361 tgatgttgcc tccccaggtc ccgcagctga ggctcagcgt gaagggcagc ctgttgcggg
     3421 ggctgccagc tccctcgttg aggttctggt tgaccagcac cctcgcggtt cgggtgccga
     3481 tcgcgactgc gtcgacgtgt tcgtcactgc gggtgtggat gccgcatgtg tgcccggcac
     3541 cctggtaatc ggtaatcctg ttgactagct caaccgcctg ctcgatgccg cccgaatagc
     3601 ggtatagcgc gagcacaacc gacagcttct caccggagaa cggatgctcc ggcccaaccc
     3661 cgtcctccct gacaatcagg aaggttcggt ccgcggtgat ggtgaatccg gccagctcag
     3721 caatccgagt ggctggctta gcgattacct caagcgctgg gatgccggcg ccccggggcc
     3781 acatcagctg ttgcagcgca ctgcgctccg cgtcggagca caggtgaccg ccggacgcga
     3841 tcaatcggtc gagcaattcg tcatagacgc tcgtttcggc caacacggcg ttgtccgcca
     3901 ggcagcttgt ggcgtaatca aaggttttgg ccgtagcgat cgcgctggcc gcgtcgtcga
     3961 gatcggcggt ctcgtcgatc acatgcacgg cgttgccgac accgaccccg taagcgggtg
     4021 taccggagct ataggcggca tgcaccatcg catggccgcc agtagcgacg atcaagtctg
     4081 cctgtcgcat taactcttgg gtcgccgaaa gcgacggtgc cgagatcacc tgcactaaat
     4141 cggccggtgc gccaacttgt tcacacgcct cgcgcatata accgacgacg gccgcagtgg
     4201 tgcgtttcgt ccgtggatgc ggggccacga tgatcgcatt acgccccttg agggcaaaca
     4261 gcgtcttcac tggtggagtg gcatccggcc cggtcgtcgg aatcaatgcg gccacgacac
     4321 ccaccggctt cgcgatcagc actaagccgc gctctggatc ctccgagatc acgccaacgg
     4381 tgcgcagcga tcgcatatcc cgaagtacac caagcacgcg cttgttgatc ttgatgactt
     4441 tatcggcata gttgccgaac ccgccttcgt cgacggcaag ctgcgccagt gcctctgcgc
     4501 ggtccttgcg ggcgacgccc cacgcgacgg cggtcactag ctcgtcgacc tgttcctgac
     4561 tgtaatcggc gatggcgcgt tgggcgctcc gagcccgcgc caccagtgcc gacacgtcgt
     4621 cgttcatggt gtcaacggtc tcgcgtagcg gccccggaat gattcggcac cacaggacaa
     4681 acccggggac cgtccttgtc tgttaaggac gtcaccgagc atcccagcca tgcatagagt
     4741 caatttgggt tgatggcatg acgaggacgg tggatctatg gatattcggg gtaagcagtt
     4801 caaccttgcc gaatggaaca acatcatcga ggagagcttg gctaatcctg atttcgagcc
     4861 gttgttcaac ttggccggcg acgaggcagt ctacgacgct gtgtttgtgg gcggtggtgc
     4921 aggcggccgg ttcggcgcag cctacctcaa agccatgggc gggcgtcctt tgatcattga
     4981 tgcctggcca ttcctcggcg gatcatgtcc acaccaggcg tgcgtgccgc atcacttgtt
     5041 ctctgatgcc gccgcggagc ttgatttgat gcggtggttc tccgatgagc tgttcttccc
     5101 taagttcgat gcctcacgcg ccagcatcct gcagatggtg aagctgttcg tcgccggacg
     5161 cagcaccgcg catgcgttca tgaactggca gaccaaggaa caactagagg ttgagtacgc
     5221 tctcaacgca cgagcgacca tcatagatcg gaacactgta agcgcaggcg gacggacttt
     5281 ccgtggacgc aatctcgtgc tcgggatggg tgcccgaccg atgtatccgg atatctccgg
     5341 cctcacgctg cgcggcatct atgactttgt cagcctggtg gaggagctgg actacgagcc
     5401 gacgcgctgc gtcatcatcg gcggcagcaa ggtcgccatg gaatacgggg catttttcca
     5461 cgcaaccgga tgcgatacca caatcgtgac gcgttcaccc ctcatgcgtt cgcgtagcct
     5521 gcatcatgtc gacgaggatc tgcggcgcta cgtggtagaa ggcatgcgca aacgtggcat
     5581 gatcatccac gagggtgcgg tcccgatctc gatcaacggc gaacattcag cggagagcgt
     5641 caccgtaagg ttggcccacg gtgaggtggt cgacttggag accgacttcg tttttattgc
     5701 taccggggaa cgcccaaact cggcgcacgc ccaagaggtg cttggcgtcg cagtcggccc
     5761 gactgggcgg gtgatcgtcg ataagagaat gcggacgacc gtcccgaacg tgtacgcaat
     5821 tggggacatg atcgatggtc ccatggagat gttcaaggcg cgcaaatgtg gcgtagcggc
     5881 tgcccgcaac atcatgggcg agcacatcga gtttgatttc gccgagtacc cggatttcct
     5941 gcacaccact tacgaggtta cttgggtggg cttgaccgag gcagaggctc gagccgagta
     6001 tgaggaggtc atcatcatcc agatgccgcc ttatgtgaaa gggctggaca gtgaaaacct
     6061 gccgctgccg tgttcggatc gctccatgct ctacgccttc tctaggcctg agttgagtgg
     6121 tttccaaaaa ctggtggtag atggcacgtc ccgcagggtg cttggcgcgc accacgttgg
     6181 ttacggcgcg aaagatgctt tccagtacct ggactacctc atccatcggc ccgaaggcct
     6241 gacgattgat gagctcggct ggatgaatga gttattcctc aatccggaac attttatcca
     6301 gttgtcccgg cttcgggccg ggcgccagaa gctggtcgac ctgtaaatcg gccggctctt
     6361 atatttgtgg gctcaggctg gccagcagag ctcgggttcg ccgtaagctc ggctccgtat
     6421 cgtcgatatc ggcgtagcgc taaggctgct ttccacgtgg gactccgtcc cggccaccac
     6481 cagggcgccg actgatgtcc gccctcacgc tcgaacagtc gacggtagtg ctgcctgtac
     6541 accaggcagg atgacgtctc ccaggctgcg taggccagtc agccagggga cgacgccatc
     6601 ggtgagttcc ccggctacgc gcaccatttt cggcgaaagg gcgctgccca ggatcgagac
     6661 cggaccccga gctctatcta ttcgtttgac tgcctgctac ggcaaggaca ctcagcgcgt
     6721 ggacgccgcg ggaaaagtga gcggaccagg ccgacggaaa accatctgct tcggcgcgtc
     6781 gagcctcctg gaccatctcc cgtggtgatg tcggcgcgcc aacggctcgc cgctgacgcc
     6841 tatggcgatg cgcatgctct acccacctcc ggccgttagc atcaacaacg gtttgtctac
     6901 agttcgcttg ccattgcgat cgcttgctgg gctgccgcga tgagcccttg ttcggtggcc
     6961 tggaagtgtt cccgtcggac ctgcgcttgt cggccgagct c
//
LOCUS       DASVXZ010000767         7346 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1788814, whole genome shotgun sequence.
ACCESSION   DASVXZ010000767 DASVXZ010000000
VERSION     DASVXZ010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7346
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1788814"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..781
                     /locus_tag="VF788_16380"
     CDS             101..781
                     /locus_tag="VF788_16380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX8935724.1"
                     /translation="MTQRSLEKIPLADGSGLPLSVVAPESSVRGGILVGPGVWGVTDA
                     VWRLAAGLASEGWLAVIPHLYHRDDIDELPEDADAVRSHVQRLTAESIRTDTDGALEW
                     LAGRDVAADRIGAVGVGLGGAVALIVATQRNLGAAVTIGGIGVVEPVAATLPTLVDVA
                     PELRCPWLGIYSRDGDVPQEEVHKLRDAAHSAHVATDLVHCCFDTDQAVAPEAWGRTL
                     NWFASHLR"
     gene            789..2762
                     /locus_tag="VF788_16385"
     CDS             789..2762
                     /locus_tag="VF788_16385"
                     /EC_number="6.2.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020663317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030729 - acetoacetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate--CoA ligase"
                     /protein_id="HEX8935725.1"
                     /translation="MSAPPILWQPDPAAVARSRIAAFRAWLASHRGVVVADYDALWRW
                     SVADLAGFWGAFAEFAGVRFHTPPQRVLTGATMPQTRWFPGATLNYAEQALGPEGPVS
                     GDASDRSHRHSRVGRSDDLAVIFRREDGVRGECSFGELRQRVAAARSALASLGVRQGD
                     RVVALAPNSLDTLVAFLATATLGGIWSSCSPDFGIRAIADRFTQLEPAVLIAVDGYVY
                     GGKSFDIRSTVDALAGEMPTLRATVRPAQWEALLTEHAGAELAFEAVEFDHPLWVLYS
                     SGTTGLPKGIVQGHGGIVVEHLKALLLQSDLGPGDRFFWFTTTGWMMWNYLVSGLMVG
                     ATIVLYDGSPARPDLGALWRLAGEERLSYFGTSAPFIQACRKAGVRPGAECDLTALRA
                     IGSTGAPLAPEGFRWIASEVGAGVQVCSVSGGTDLCAAFVCAAPDVPVWEGELSCRAL
                     GAAVVALDEAGDELLDEVGELVIAKPMPSMPVCFWNDPDGTRLREAYFEMYPGLWRHG
                     DWIRITPRGSCVIYGRSDATLNRGGVRMGTAEFYAVVEGLDEVLDSLVIDTSGAGRDD
                     GELLCFLVLASDVALADVEPRLRAALRENLSPRHVPNRFIVVDEVPRTLNGKKCEIPV
                     KRILAGVDPSHAVSPDALRNPDSLEPFVALRVL"
     gene            complement(2806..4011)
                     /locus_tag="VF788_16390"
     CDS             complement(2806..4011)
                     /locus_tag="VF788_16390"
                     /inference="COORDINATES: protein motif:HMM:NF023224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2399 domain-containing protein"
                     /protein_id="HEX8935726.1"
                     /translation="MSGPSALLHAVRLRAQRGHGTETGALLALSLSTEQRREIGLLLG
                     TRWQVSGRPVRLQDVAARLAEHGLSVRHLAEVATGGPIEENRALRERSAAQAAGERAQ
                     AVAVLTARGISPSDVDRWLADPGLPRAGSGALIDMATRVATVWTCLPRAGQPIRLAAL
                     AAGALHDSHALDASEPLGRAVARLAAVAHGLERPQRAGRTWREAWAAAGVRCDGVSSR
                     VLGLNLPLSGLSPAVTLCSASAGEPVWLTLRSLSGDWSAPGGAPVFVCENPTVAEAAA
                     DAHGPSCPPLVCTDGIPSGAALDLIAGLASAGCQIVARADIDTAGFTVVEQVLSVAPN
                     TRLWRFDAHTYAAAQGLPRPGDVPAGADPALAQLRNTYDDHRVPLHEEQILPNLLSDL
                     REASHLTVR"
     gene            complement(4050..>7346)
                     /locus_tag="VF788_16395"
     CDS             complement(4050..>7346)
                     /locus_tag="VF788_16395"
                     /inference="COORDINATES: protein motif:HMM:NF024947.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SbcC/MukB-like Walker B domain-containing
                     protein"
                     /protein_id="HEX8935727.1"
                     /translation="ELDNTTKARRFAETALDEANAAVKRVDGQLSGSRNQHIDLNTEL
                     RELLDSQAFQDAVSAAQRVESLRSEVGSLRGQLGRAKQRAGELDGAAALATDAVGAAQ
                     SVFDTAARTADKRLGDVESRAQPAGLAASVQRHLPHQDLPALSADLAVRVERFTELRG
                     LRRIFSAAEREADKSAQTARDRSEDVEEAAKQEAVAHRTVETSVDNLRQQIREWAAAT
                     TIARCTDEQVETWCDLIAELTVAEPEDAIAHRQDSPTTVIRARLDAVRETLRGERETL
                     RRRRDPLATEQDELIVQLADIRAQTERPPPPPVLWRRQERPQLDSALGAPLWQCVQPL
                     GGLPPQQLDLLEATLAASGLLDAWLTPDGSLFAADGVEPFDVQLRPPGNASVARTLRQ
                     VLAPTSAGGVPDLVIHSVLSGIGWHHARPAGEQADAWLAADGTWRVGPLTGCAGTIQP
                     ASYLGATAREAARQREITRLKTRLAELESLIEALDLMIDQITEDLSTLDSEARRLPPE
                     RPVTDAVTTWRERQARLSTCRQRLASAQAAHQHKESARDAAWAAYAEYAGRYAFPLHE
                     LDELATALHTYRLALSSLASALELLSARRAALVTAERTLAGQRELLSRAEFEVRELAQ
                     QVRQAEVRLRTAEEALGADHQRQLRRRDELDETITKLDSEIGRLSDSLSDAKVKAGKA
                     QDTLRTHEERRQTAEQARDAALAAWWEAFDAGLTQPLGLTEPERRGVETARETTRTAR
                     REITVTADAVSEDRSWRRCFAQLEELRHNLLPNRDARVLDDLDEATIPKVVILADSGT
                     GWQAPPMASDALATRVREQEATFDSEQQRVLTTLLGSTFIEHLKDRLDYTERTFSDIN
                     KQLTAHPTRHGHAVRLRWEADPTDPDTGAVVTALSQGYQQLGTQRQEMVRSFLARKID
                     AARADASADGAADWKEQLSSALDYRSWLRISLQYRPGSTSGWAPFDTAKHGAKSGGEK
                     VVLLSQPLFAAAVVAYNAASDTAPRWVWLDEAMTGVDTGIKASFMGLTVDFDLDVMLT
                     AHDEWCKYSTVPAVAVYDLARQEHLPGVDAMPFLWCGGEWTELNLPTTPAWTKAPLEP
                     EGLFAVVDAD"
BASE COUNT         1041 a         2501 c         2562 g         1242 t
ORIGIN      
        1 ttggcctcga tccgtcgaag aggtgatctt tcgagtttct ggttgctgat ccggtaaggt
       61 gccccctcac ccagagttcc cgtcgacgag tgggtgggcg atgacgcagc gcagcttgga
      121 gaagatcccg ctcgccgacg gcagtgggtt gccgttatct gtcgttgcgc ccgaatcctc
      181 agtgcgtggt ggcatcctgg taggaccggg tgtgtggggt gtcaccgatg ccgtctggcg
      241 gctggccgct gggctggcca gtgagggctg gctggccgtg atcccacacc tgtaccaccg
      301 ggacgacatc gatgagctgc ccgaggatgc cgatgcggtg cgcagccatg ttcagcgtct
      361 gactgcggag tccatccgca ccgacaccga cggcgcgctc gagtggctgg cggggcgcga
      421 tgtggctgct gatcggatcg gtgcggtcgg cgtcgggctg ggcggcgccg tcgcgctcat
      481 cgtcgccact cagcgcaacc ttggcgccgc ggtgaccatc ggcggcattg gggtggtgga
      541 gccggtggct gcaaccctgc ccacgttggt cgacgttgcg cccgagctgc ggtgcccgtg
      601 gctgggcatc tacagccggg acggcgacgt gccgcaggaa gaggtccaca agctgcgtga
      661 cgccgcccat tccgcccacg tagccaccga tctggtgcac tgctgtttcg acaccgacca
      721 ggccgtcgcg ccggaggcct ggggtcgcac cctcaactgg ttcgccagcc acttacgctg
      781 atgtgcccgt gagtgcgccc ccgatcctct ggcaacccga cccggccgcc gtcgctcgct
      841 cccggatagc ggccttccgg gcatggttgg cgtcccaccg aggcgtcgtg gtagccgatt
      901 acgacgcgct gtggcgttgg tcggtggccg acctggcagg attctggggc gccttcgccg
      961 agttcgccgg cgtccgattc cacaccccac cgcagcgggt gctcaccggc gccaccatgc
     1021 cacagacgcg gtggttcccg ggcgcgacgc tcaactacgc cgagcaggca ttgggcccgg
     1081 agggccccgt gagtggcgat gcgagtgata ggtcacatcg ccactcacgg gtcggccgga
     1141 gtgacgacct cgcggtgatc tttcgccggg aggatggggt gcggggggag tgcagcttcg
     1201 gtgagttgcg gcagcgagtg gccgcggcgc gatcggcgct ggcgtcactg ggggtgcgcc
     1261 agggagaccg cgtggtcgcg ctggcgccga actcgctgga caccctggtg gccttcctcg
     1321 ctacggccac cctcggtggg atctggtcgt cgtgctcgcc ggactttgga atccgggcga
     1381 tcgccgatcg gttcacccag ctggagcccg ctgtcttgat cgcggtggac gggtacgtct
     1441 acggcggcaa gtcgttcgac atccgctcca cagtggatgc cctagccggc gagatgccga
     1501 cgctgcgcgc cacggtgcgg ccagcgcagt gggaggcgct gctcaccgag cacgctggtg
     1561 ctgaattggc gttcgaagct gtggagttcg accatcccct gtgggtgctc tactcctcag
     1621 gcaccaccgg gctgcccaag ggcatcgtgc agggtcacgg tgggatcgtc gtggagcacc
     1681 tcaaggcgct gctgttgcag tcggatctgg ggccgggaga ccggttcttc tggttcacca
     1741 ccaccggctg gatgatgtgg aactacctgg tcagtggcct gatggtgggc gcaacgatcg
     1801 tgctctacga cggcagcccg gcgcgcccgg acctcggcgc actgtggcgg ctggccggtg
     1861 aggaacgcct gagctatttc ggcacgtcgg caccattcat ccaggcctgc cgcaaggccg
     1921 gcgtgcgtcc aggcgctgag tgcgatctca ccgcgctgcg ggcaatcggc tcgaccgggg
     1981 cgccgctggc gccggaaggc ttccggtgga ttgcctcgga agtcggtgca ggtgtgcagg
     2041 tctgctcggt gtcgggcgga accgacctgt gtgcggcctt cgtctgtgcc gccccggacg
     2101 tgccggtctg ggagggggag ctgtcctgcc gggcgctggg tgccgcggtg gtggcactgg
     2161 atgaggccgg tgacgagctg ctcgacgagg ttggcgaact ggtgatcgcc aagccgatgc
     2221 cctcgatgcc ggtgtgcttc tggaacgatc cggacggcac ccggctgcgc gaggcgtatt
     2281 tcgagatgta tccgggcctg tggcggcacg gcgactggat ccggatcacc ccgcgcggct
     2341 cgtgcgtgat ctacggccgg tccgacgcca cgctgaaccg cggtggggtg cggatgggca
     2401 ccgccgagtt ctacgcagtg gtcgagggcc tggacgaggt gctcgattcg ctggtcatcg
     2461 acacctccgg tgccggccgc gacgacggcg agctgctctg cttcctggtg ctcgcatccg
     2521 acgtggcgct cgccgacgtc gaaccgcggc tgcgcgcggc gctgcgggag aacctctcgc
     2581 cacggcacgt gcccaaccgg ttcatcgtgg tcgacgaggt gccccgcacc ctcaacggca
     2641 agaagtgcga gataccggtc aagcggatcc tcgccggcgt cgatccgtcc cacgccgtca
     2701 gccccgacgc cctgcgcaac cccgactcgt tagagccttt cgtggcgctg cgcgtcctgt
     2761 gagtggcgat gcgaccgata actcgcatcg ccactcacag ggctgtcatc tcactgttag
     2821 gtggctcgcc tcgcgaagat cggaaagaag gttgggcaga atctgctcct catgcaacgg
     2881 gactcgatga tcatcgtagg tattgcgcaa ctgcgcgagg gcgggatcgg cgccggctgg
     2941 cacatcacca gggcggggca gcccctgcgc tgcggcgtag gtgtgcgcgt cgaagcgcca
     3001 gagccgtgtg ttcggcgcga ccgagagcac ctgttcgacc acggtgaatc cggcagtatc
     3061 gatgtctgcc cgcgccacga tctgacagcc ggcgctcgcc agcccggcga tcaggtccag
     3121 cgccgcaccg gacggaatgc catcggtgca caccaacggt gggcagctcg gtccatgggc
     3181 atctgcggca gcctcggcaa cggtcgggtt ctcgcagacg aacaccggcg cccccccggg
     3241 ggcgctccag tcaccgctca gtgatcgcag cgtcagccac acgggttcac cggccgaggc
     3301 agaacacagt gtcaccgctg gtgagagtcc ggacagcggc aggttgagcc ccagcacccg
     3361 ggaggacacg ccgtcgcatc gaactcccgc agccgcccac gcctcgcgcc acgttcggcc
     3421 ggcgcgttgc ggtcgctcca gcccgtgtgc gaccgccgcc aaacgggcaa ccgcccgccc
     3481 gagcggctcg ctggcatcca gcgcatgcga gtcgtgcagc gcgccggccg ccagcgccgc
     3541 gaggcggatc ggttgcccgg cccgcggcaa gcacgtccac acggtggcca cccgggtagc
     3601 catatcgatg agcgcaccgc taccagctcg tggcagaccc gggtccgcca gccatctgtc
     3661 cacatcggat ggggaaattc cgcgagcggt gagcaccgcg acggcctgcg ctcgttcgcc
     3721 tgccgcctgg gccgcggagc gttcgcgcag cgcccggttc tcctcgatcg gcccacctgt
     3781 cgctacctcg gccagatggc gtaccgacaa gccgtgctcg gcgagccgag cggcaacgtc
     3841 ctgcaaccgg accggtcggc cggagacctg ccaccgggtg ccgagcagta acccgatctc
     3901 gcggcgttgc tctgtgctga gggacagcgc gagcagtgca ccggtctcgg tgccgtggcc
     3961 gcgttgtgcc cgcaggcgaa ccgcgtgcag caacgccgac gggccggaca tctgcatcca
     4021 ccgtccgagg ccctcgggca accgagtcat cagtcggcgt ccacgacggc gaacagtcct
     4081 tccggctcaa gcggcgcctt cgtccacgcc ggggtggtgg gcaggttcag ctcggtccac
     4141 tcaccgccgc accacagaaa cggcatggcg tccacgcctg gcaggtgctc ttggcgggcc
     4201 aggtcataga ccgccaccgc gggcaccgtc gagtacttgc accactcatc gtgcgcggtc
     4261 agcatcacgt ccagatcgaa gtccacggtc agacccatga acgatgcctt gatgccggtg
     4321 tccaccccgg tcatcgcctc atccagccac acccagcgcg gcgcggtgtc gctggccgcg
     4381 ttgtaggcga ccactgccgc ggcgaacagt ggctgagaca gcagcaccac cttctcccca
     4441 ccggacttcg caccgtgctt ggctgtgtcg aatggcgccc atccactggt cgagccggga
     4501 cggtactgca gggagattct cagccagctg cggtagtcca atgcagacga gagctgttcc
     4561 ttccagtccg cagcgccgtc tgcggaggcg tctgcccgcg ccgcgtcgat cttgcgggcg
     4621 aggaaggagc gcaccatctc ctggcgttgt gtgccgagct gctggtagcc ctggctcaac
     4681 gcggtgacca cggccccggt gtcgggatcg gtgggatccg cctcccaccg cagccgtacc
     4741 gcgtggccat gccgggtggg atgagcggtg agctgcttgt tgatgtcgct aaaggtgcgc
     4801 tcggtgtagt ccaagcggtc cttgagatgt tcgatgaacg tggagccgag cagggttgtc
     4861 agcactcgct gctgctcgga gtcgaaggtg gcctcctgct cgcgcacgcg cgtcgcaagc
     4921 gcgtcggagg ccatgggcgg cgcctgccag ccagtcccgc tgtctgcgag gatgaccacc
     4981 ttcgggatgg ttgcctcgtc gagatcgtcg agcactcggg cgtcccggtt cggcaggagg
     5041 ttgtggcgga gttcctcgag ctgagcaaag caccgtcgcc agctgcgatc ctccgacacg
     5101 gcatccgcgg tgaccgtgat ctcgcgccgg gcggtccggg tcgtctcccg tgcggtttcc
     5161 accccgcgac gttccggttc ggtcaggccg agcggctgcg tcaagccggc gtcgaaggcc
     5221 tcccaccacg cggccagagc ggcatcgcgc gcctgctcag cggtctgccg tcgctcctca
     5281 tgcgtgcgga gggtgtcctg ggccttgcct gccttgacct tggcatcgct gagcgagtcg
     5341 ctgagccgcc cgatctcgct gtcgagtttt gtgatcgtct cgtcgagctc atccctgcgg
     5401 cgcaactgcc gctggtggtc tgcgcccaac gcctcctcgg cggtacgcag cctgacctcg
     5461 gcctggcgca cctgctgggc cagctcgcgc acctcgaact cagcgcggct gagcaactcc
     5521 cgctggccgg ccagggtccg ctcggccgtg acgagcgcgg ctcgccgcgc gctcagcagc
     5581 tccagtgcgg acgccagcga actgagcgcg agccggtagg tgtgcagcgc ggtggccagc
     5641 tcatcaagct catgcagggg aaacgcgtac cgcccggcgt actccgcgta cgcggcccac
     5701 gctgcatccc gcgcgctctc cttgtgctga tgcgccgcct gcgcggacgc cagtcgttgc
     5761 cggcacgtcg acagccgggc ctggcgctca cgccaggtgg tcaccgcgtc ggtcaccgga
     5821 cgttccggcg gcaaccgccg tgcctccgaa tccagggtgg acaagtcctc ggtgatctgg
     5881 tcaatcatca gatccagtgc ctcgatcagc gactccagct ccgccagccg ggtcttcaat
     5941 cgagtgatct cccgttgcct ggcggcttcc cgcgccgtag cgccgaggta ggacgccggt
     6001 tggatggtcc cggcgcatcc ggtcagcggg cccacccgcc aggtaccgtc ggctgccagc
     6061 caggcatcgg cctgctcgcc agccggacgc gcgtgatgcc atccgatgcc gctcagcact
     6121 gagtggatca ctaggtcggg cacgccaccg gctgaagtgg gtgccaggac ctgcctcaag
     6181 gttcgggcga cgctggcatt gccggggggt cgcagctgga cgtcgaaggg ctcaacgccg
     6241 tcggcggcga acaggctgcc gtccggggtg agccaggcat ccagcagccc ggacgcggcg
     6301 agcgtggcct ccagcaggtc aagctgctgc ggcggcagac cgccgagggg ttgcacgcac
     6361 tgccacagcg gtgcgccgag cgcggagtcg agctggggtc gttcctggcg acgccacagg
     6421 accggcggtg ggggcggccg ctcggtctgg gcgcggatat cggccagctg cacgatcagc
     6481 tcgtcctgct cggtggccag cggatcacgc ctgcgccgca gcgtttcacg ctcgccacgc
     6541 agcgtctcgc ggacggcgtc gagccgcgct ctgatcacag tcgtggggga gtcctgccga
     6601 tgcgcgatgg catcttcggg ctcggcgacg gtcagctccg cgatcagatc gcaccaggtc
     6661 tccacctgct catcggtgca tctggcgatc gtggtcgcgg cagcccattc acggatctgc
     6721 tggcgcaggt tatccacgga agtctcaacg gtccggtgtg ctacggcctc ctgtttggcg
     6781 gcctcctcga cgtcctccga tcggtcccgc gcggtctgag ccgacttgtc ggcctcccgt
     6841 tccgcagcgg aaaagatgcg gcgcagcccg cgtagctcgg tgaagcgctc aactcgcacg
     6901 gccagatctg cgctcagcgc gggcaggtcc tggtgcggaa ggtgacgctg caccgaagcg
     6961 gccaaaccgg cgggttgcgc ccgggactcg acgtcgccca gccgtttgtc agcggtgcgc
     7021 gctgcggtgt cgaagacgct ctgagcggcg ccgactgcat cggtggccaa ggcagcggca
     7081 ccgtcgagct cacccgcgcg ctgtttggcg cggccgagct ggccgcgcag cgatccaacc
     7141 tcggacctga gcgactcaac cctttgcgct gcgctgacgg cgtcctgaaa tgcttgtgag
     7201 tcaagcagtt cgcgcagttc ggtattcaga tcgatgtgct ggtttcggct ccccgacagc
     7261 tggccgtcaa cccgcttgac cgcggcgttc gcctcgtcca gcgcggtctc cgcgaaccgg
     7321 cgggctttgg tggtgttgtc gagctc
//
LOCUS       DASVXZ010000768         2232 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1253165, whole genome shotgun sequence.
ACCESSION   DASVXZ010000768 DASVXZ010000000
VERSION     DASVXZ010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1253165"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..854
                     /locus_tag="VF788_16400"
     CDS             219..854
                     /locus_tag="VF788_16400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEX8935728.1"
                     /translation="MQFCELAVPGVIEFTPQVFPDARGQFVAPFRQSSFIDATGHQLQ
                     LAQCNHSVSRRGVIRGVHFSDVPPGQAKYVHCAKGALLDVAIDVRMGSPTFGRWCSVL
                     LDTGTYRAVYLAEGIGHAFIALAPDTVMAYLCSTGYDPTAEHTVHPLDPALNLPWPTD
                     LEPTLSDKDRAAPTLAEAAAAGTLPRWSDCQARYTELRAATPRAVGLTRSQ"
     gene            complement(848..1210)
                     /gene="sodX"
                     /locus_tag="VF788_16405"
     CDS             complement(848..1210)
                     /gene="sodX"
                     /locus_tag="VF788_16405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0016485 - protein processing [Evidence
                     IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-type superoxide dismutase maturation
                     protease"
                     /protein_id="HEX8935729.1"
                     /translation="MPSIPDGDHVMGYNLVGWPWFCAVVRGPSMSPTLADGDVVLISL
                     RARRRPGAVVLVRWTRRPDQLSVKRAIGLHGEGWWVLGDNPAGSTDSRQLGTAEVIGV
                     VGARLWPAPRIQWTERRH"
     gene            1270..1674
                     /gene="sodN"
                     /locus_tag="VF788_16410"
     CDS             1270..1674
                     /gene="sodN"
                     /locus_tag="VF788_16410"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase, Ni"
                     /protein_id="HEX8935730.1"
                     /translation="MLSRILHRPRLEVTAHCDLPCGVYDPAQARIEAESVKAIQEKYQ
                     SNSDPEFRARAIDIKEQRSDLVKHHLWVLWTDYFKPPHFEKYPQLHELFNKATKAAGA
                     SGTKGSNDPATGQVLLDHITEIDKIFWETKQS"
     gene            complement(1859..>2232)
                     /locus_tag="VF788_16415"
     CDS             complement(1859..>2232)
                     /locus_tag="VF788_16415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935731.1"
                     /translation="DISRPSRLRHPLAWRRARLHERLHRITDQRLAWRVQDVLVGCGL
                     SQADYSIGGGHVFHIPQVISVHNGPPVTLDIRMLQGQTPEDFAAHASAMAYNLDVAEV
                     RVIPLGVSLIRLELLRSKPIP"
BASE COUNT          414 a          734 c          711 g          373 t
ORIGIN      
        1 cttccgctgc gccaaccgcc accagcgcct cgactccggc aacgacgtgt cacaaccctg
       61 tcgagttcac taacgcgcga accggcgatt ggttatgcca caagtagcaa ccccctgtga
      121 ctgtggagtg catcctgcgc cgaagtggat ctagattatc accggatcag ggggctaaag
      181 tcgcagtgcg cggccaggcg gtggttaggg tggtgcccgt gcagttctgc gaactggccg
      241 tgccgggagt gatcgagttc actccccagg tgtttccgga cgcgcgcggt cagttcgtgg
      301 caccctttcg acagtcgtcg ttcatcgacg ccaccggtca ccagcttcag ctagcccagt
      361 gcaaccacag cgtttcccgg cgcggcgtga tccgcggggt gcacttctcc gacgtgccgc
      421 ccggccaggc caagtacgtg cactgcgcta agggcgcgct gctggacgtc gcgatcgacg
      481 ttcggatggg ttcccctacc ttcggccgct ggtgctcagt gctgctggac accgggacct
      541 accgagcggt gtacctggcc gaggggatcg ggcatgcctt tatcgcgcta gcccctgaca
      601 ccgtgatggc ctacctgtgc tccaccggct atgaccccac ggcagaacac accgtccacc
      661 cgctagaccc ggcattaaac ctgccctggc ccaccgacct cgagccgaca ctgtccgata
      721 aggaccgtgc cgctcccacg ctcgccgaag ccgccgcagc gggcaccctg ccccgctggt
      781 ccgactgcca agcccgctac accgaactcc gcgctgcgac cccgcgtgca gtggggctaa
      841 ccagatctca gtgacgccgc tcagtccact gaatgcgcgg ggcaggccag aggcgtgcgc
      901 ccacgacccc gattacctcg gcagtgccga gttggcggga atcggtcgat ccggcagggt
      961 tgtcacccag gacccaccag ccctcgccgt gcagaccgat cgcgcgcttg accgacaact
     1021 gatctgggcg ccgcgtccag cggacgagaa ccaccgcgcc gggccgtcgt cgggctcgca
     1081 ggctgatcag caccacgtca ccatccgcca acgtgggtga catcgaaggg ccgcgcacca
     1141 cggcgcagaa ccatggccac ccgacgaggt tgtaccccat cacatgatca ccgtccggga
     1201 tgctcggcac gccaggcacg agtagggtcg cgtgacaacg gagcacaatg tcagggagga
     1261 acgatgggac tgctatcgcg cattctgcac cgcccccgcc tggaggttac cgcgcattgc
     1321 gacctcccgt gcggtgtcta tgaccccgcg caggcccgta tcgaggccga gtcagtcaag
     1381 gcgattcagg agaaatacca gtccaactcg gacccagagt tccgggcgcg cgcgatcgac
     1441 atcaaggagc agcgcagcga cctggtgaag caccacctct gggtgctatg gacggactac
     1501 ttcaagccgc cgcacttcga gaaatacccg cagctgcacg agctgttcaa caaggccacc
     1561 aaggcagcgg gcgcctcggg taccaaaggg tcgaatgatc cggccaccgg acaggtactg
     1621 cttgatcaca tcactgagat tgacaagatt ttctgggaga ccaagcaaag ctgaggtccc
     1681 cgagtcgcag acggcgctga ccagcggaga tacttgtcgt tggtcagcgt cgttgtttat
     1741 tgtcgagcgt tgtcgcgtcc gctgagacgg cccatagacg gccacgtgcc gaatgtccac
     1801 ggtttaggcg catgcggccc ggcggtgtga atgcgccgca gcaccacgcc aggtcaactt
     1861 aggggattgg cttcgaccgt agtaattcca ggcggatgag ggataccccg agcgggatta
     1921 cccggacctc ggccacgtcg aggttgtagg ccatggccga ggcgtgggct gcgaagtcct
     1981 cgggtgtctg gccctgaagc atgcggatgt ccagggtcac tgggggtccg ttgtggaccg
     2041 agatcacttg cggaatgtga aagacatgac cgccgccgat gctgtagtcg gcctggctga
     2101 gcccgcatcc cacgaggacg tcctgaaccc gccaggcgag ccgttggtcg gtgatccggt
     2161 gtaggcgttc atggagccgg gcgcggcgcc aggctagcgg gtggcgtagc cgcgaggggc
     2221 gggaaatatc gt
//
LOCUS       DASVXZ010000769         1657 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1611240, whole genome shotgun sequence.
ACCESSION   DASVXZ010000769 DASVXZ010000000
VERSION     DASVXZ010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1611240"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(265..972)
                     /locus_tag="VF788_16420"
     CDS             complement(265..972)
                     /locus_tag="VF788_16420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015786788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX8935732.1"
                     /translation="MFYWLLKHLLLGPLMKLACRPQVRGSEHIPRRGGAILASNHLAV
                     ADSFFLPLMIRRRLTFLAKREYFTTPGLRGWLKRRFFSAAGQVPIDRSSGSAAQAALD
                     TGVRLLAAGKLLGIYPEGTRSPDGRLYKGKTGVARMALEAGVPVIPVAMVGTDKVSPV
                     GTKMWRPHPVEIRFGAPLDFSRYAGLAGDRFVERSLVDEIMYSLMDLSGQEYVDIYAT
                     SVKEREAAPPRLSLKPS"
     gene            1191..1613
                     /locus_tag="VF788_16425"
     CDS             1191..1613
                     /locus_tag="VF788_16425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935733.1"
                     /translation="MTYPDPDEQERSKDRAEEDLEHTHAAFDRIVAGLRADPREPHDP
                     HSPALQPVSEPARDTDEDHYNPPEPPPLPVPRPRTVGGVLTLTAGLFLLVAPSLLGLG
                     ERVATPLGLLAITAGIGWLVIGLRPDPPPEGSDDGARL"
BASE COUNT          336 a          555 c          507 g          259 t
ORIGIN      
        1 aggatgtccg cagggggcca acggcgacca acgctgtcaa acgggtgacg gtgccgctca
       61 gagggggtgc aataagatga gcgcaggtcg gaaaacccct ggtgacggtc gtagaagaac
      121 cgcaccctga ccgaccctca ccctcgctga gctgcccgaa cgttacgacg atatcccccc
      181 gccgacgtgg cagtcgtggg tgctcatcac agagcgaatt ttcgttctgg tgatcaccag
      241 ctcagcgaag cgccgccttg cccgtcagga cggcttaaga gacaggcgcg ggggggcagc
      301 ctcacgctcc ttcaccgatg ttgcgtagat atcgacgtac tcctgaccag agagatccat
      361 caaggagtac atgatctcat caaccaagga ccgttcgaca aatcgatcac cggccagacc
      421 cgcatagcga gagaaatcca gtggagcacc aaagcgtatt tccaccggat gcggccgcca
      481 catcttggta ccgaccggac tgactttgtc agtgcccacc atcgcgactg ggatcaccgg
      541 aacgccggcc tccagcgcca tccgggcgac gccggtcttt cccttgtaca accgcccgtc
      601 gggcgaccgg gtgccttccg gatagatgcc gagcaactta cccgcagcca gcaatcgcac
      661 tccggtgtcg agggcggcct gggcggcgga cccgctagag cgatcgatgg gaacttggcc
      721 cgcggcactg aaaaaccgcc gcttcagcca tcctcgcagt ccgggggtgg tgaagtactc
      781 acgcttggcc aaaaacgtga gccggcgccg gatcatcagc ggaaggaaga acgagtcagc
      841 caccgcgagg tggttgctgg ccagaatcgc tccaccgcgc cgaggaatat gctcggagcc
      901 gcggacctgc gggcggcatg ccagcttcat cagcgggcca agcagcaggt gtttgagcag
      961 ccagtagaac actgcctacc gatccttccc ttgccctcgc gggccgcagc agcaacaagc
     1021 ctacggacga ggacgtccgc ggcacaacgg tcctccgcca tcctggcgta cgcgtcgccg
     1081 actacccccg gtccgccgac tgctcagtat tcaccgcgtg cccggttatt gggatcggcg
     1141 gtactgtcag caccggagcg aaccccaaac acggagagtg gtgtcgccgg gtgacctatc
     1201 ccgatccgga cgagcaggag cgttcgaaag accgtgcgga agaagatctc gagcacaccc
     1261 acgccgcgtt cgaccgtatc gtcgcgggct tgagggcaga cccccgagaa cctcatgacc
     1321 cgcactcgcc cgcactccaa ccggtgtcgg aacccgcgcg ggacaccgac gaggaccatt
     1381 acaacccgcc agaaccccca ccattgccgg tacctcgtcc tcgcacggtg ggcggcgtgc
     1441 ttacgctcac cgcagggctg tttttgctag tagcaccgag cctgctaggc ctgggcgagc
     1501 gcgtggcgac accattgggg ctgctcgcta tcaccgccgg gatcgggtgg ctggtaatcg
     1561 gcctgcgacc cgatccgcca ccggagggat cagacgacgg ggcacggctc tagatatcag
     1621 gctcgccgca tcaggcgagg atctccacct ggcgctt
//
LOCUS       DASVXZ010000770         3097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1611385, whole genome shotgun sequence.
ACCESSION   DASVXZ010000770 DASVXZ010000000
VERSION     DASVXZ010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1611385"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..293
                     /locus_tag="VF788_16430"
     CDS             120..293
                     /locus_tag="VF788_16430"
                     /inference="COORDINATES: protein motif:HMM:NF019542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935734.1"
                     /translation="MCRGPGGFDEMMGALSDDKHPEHKMYREWIPAGYDPVRCDLDKI
                     NEALAQLNAGALS"
     gene            complement(303..509)
                     /locus_tag="VF788_16435"
     CDS             complement(303..509)
                     /locus_tag="VF788_16435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8935735.1"
                     /translation="MRSSDLSHPTWRKSSRSNGGGDGNCVEVAQLTHLVAMRDSKDPA
                     GAVLAFTRVEWQAFLGVVRAGDLD"
     gene            complement(537..1373)
                     /locus_tag="VF788_16440"
     CDS             complement(537..1373)
                     /locus_tag="VF788_16440"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935736.1"
                     /translation="MGIKGTLQQRQLARTLRRLREEAGLSLEEAAPRLDWSTSKLGRI
                     ETAQQGVDVHGVRSMLDLYNVGGAQWAEIIDLVREARKKNEWHAYGIGGQGYPKLEMD
                     ATVVHDYQLAYVPGLLQTEDYMRALFRTSRRRPSEAEIAWDVEVRRFRQRRLTEEPLL
                     ELVAIVDESALRRPVLGVGVMRAQLQHLVVSSDFPSVSLQVLPASLGTHSGLDGSFTV
                     LGFGDPDEPEIAYIEHTASALHLHKQAEVQVCKLVFDRLRSEALSPSDSAALIERLAA
                     TL"
     gene            1506..1742
                     /locus_tag="VF788_16445"
     CDS             1506..1742
                     /locus_tag="VF788_16445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935737.1"
                     /translation="MTGEKLSDPPELVALCREGEDGQEEVAGWAMVLPDQVVGYVPSR
                     TGAGAASYTFESLDCAEWILSYSGLYPVRDVARR"
     gene            1726..2757
                     /locus_tag="VF788_16450"
     CDS             1726..2757
                     /locus_tag="VF788_16450"
                     /inference="COORDINATES: protein motif:HMM:NF014825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC-C domain-containing protein"
                     /protein_id="HEX8935738.1"
                     /translation="MSPGDELHDGAAARVHEMVAIPCAMPSTGLLTLDDVDEISRFAC
                     DADLEAGTGYALMGAAENAERIGDLQAARVLAERAIEAHRAQGDPDGYPRAFRARLLL
                     RLGREDEAMGELTALRPLLSQDPDAVVYITETLEAGGRAETAEQWLTAALSTALQRRQ
                     ELASRHGEPDYEQAAAVAFMLAQSRHQIRGDLDLPHDDYDDLADRLMSVVQAALGTDE
                     PDYESATLLFWPQPEFDRLLRCWPSLAEEYGRTWDEHRITVQKTLLLWSESSGLRLGL
                     LPGSVEELAAHAERTGADPTDPQVRQDYAEHLTGPAREIAWPPGRNHTCWCGSAHKYK
                     KCCLSRART"
     gene            2899..>3097
                     /locus_tag="VF788_16455"
     CDS             2899..>3097
                     /locus_tag="VF788_16455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013221961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEX8935739.1"
                     /translation="MTEITLPPDGDRVEPVDIQEEMQRSYIDYAMSVIVGRALPDVRD
                     GLKPVHRRVLYSMYDSGFRPDR"
BASE COUNT          520 a          993 c         1061 g          523 t
ORIGIN      
        1 caaggtgtcg ctgcgacaca tgaagccgcc ggtctggcga cgcctccagg tgccgtccaa
       61 gacgagcctg gccgagttgc accacatcct ccaggcggcg atgggctggt acgactgtca
      121 tctgccgtgg ccccggggga tttgacgaga tgatgggcgc cctgagcgat gacaagcacc
      181 cggaacacaa gatgtaccgt gagtggatcc cggccggcta cgacccggtg cgctgcgacc
      241 tcgacaagat caatgaggcg ctcgcgcagc tcaatgccgg cgcgctgagc tgagatccgt
      301 agtcagtcga ggtcgccagc ccgaacgacg ccgagaaacg cttgccactc gacccgggtg
      361 aacgccagga cggcaccggc ggggtccttg gagtcacgca tcgcgacgag atgggtgagc
      421 tgggcgacct cgacgcaatt gccatcgccg ccgccgttac tgcggctgct cttgcgccag
      481 gtggggtggg acaggtcgga cgaacgcacg gtgctcgcct cgttcgctct cggtagttac
      541 agggtcgcgg ccagccgctc gatgagggct gccgagtcgg atgggctcag cgcctcggac
      601 cgcagccggt cgaacaccag tttacaaact tgtacctcgg cctgcttgtg caggtgcagc
      661 gcgctagcgg tgtgctcgat gtaggcgatc tcaggttcgt cggggtcgcc gaagccaagc
      721 acagtgaagg aaccatccag cccggagtgc gtgccgagcg aggctggcag tacttgaagg
      781 gatacggacg gaaagtcgga cgacacgacg aggtgctgga gttgggcccg catcaccccc
      841 accccgagga ccgggcggcg cagtgctgat tcatcgacga tggcgaccaa ctccaacagg
      901 ggttcttcgg tcagccgtcg ctgccggaac cgccgaacct cgacgtccca ggcgatctcg
      961 gcctcgctgg ggcgtcgccg ggaggtgcgg aacaacgccc gcatgtagtc ctcagtctgt
     1021 agcagccccg gcacgtaggc gagctggtaa tcgtgcacga cggtggcgtc catctccagc
     1081 ttgggatagc cctgaccgcc gatgccgtag gcgtgccact cgttcttctt ccgggcctcg
     1141 cggaccaggt cgatgatctc tgcccactgc gcgccgccga cgttgtacag atcgagcatg
     1201 ctgcgcacgc cgtgcacgtc cacgccctgc tgggcggtct cgatccggcc cagcttgctg
     1261 gtcgaccaat cgagtctcgg ggccgcttcc tccagactga gcccggcctc ctcccgcagc
     1321 cggcgcaacg tccgggcgag ctgccgctgc tgcagcgtcc ccttgatgcc caccccacct
     1381 ccgtcatcag ttccgatcat gactctggga agcgtgagct gggaacccac ctccggctca
     1441 cccagcggtg ccatcccgtt cggactctag gaggtccact gctctgatca cgggaggaac
     1501 accagatgac cggtgagaag ctgtccgatc cacccgagct ggtggcgttg tgccgggagg
     1561 gcgaggacgg tcaggaggaa gtggctggct gggcgatggt gctcccggat caggtggtcg
     1621 gctatgtccc aagccgcacg ggagccgggg cggcctcata taccttcgag tcgctggact
     1681 gcgcggagtg gattctcagc tactcgggtc tctacccggt cagggatgtc gcccggcgat
     1741 gaattgcatg acggcgcggc tgcgcgcgtc catgagatgg tggcgatacc gtgcgccatg
     1801 ccatcgactg gactactcac cctcgacgat gttgacgaga tcagccgttt cgcgtgcgac
     1861 gctgatctgg aggccggtac cggatacgcc ctgatgggcg ccgccgaaaa tgccgaacgg
     1921 atcggggatc tccaggcggc tcgggtgttg gcagagcgag ccatcgaagc gcaccgggcc
     1981 cagggcgatc cggatggcta cccccgagcc ttccgggccc gcttgctgct gcgccttggg
     2041 cgcgaggatg aggcgatggg ggagttgacg gcgctgcgcc cgttgctgtc tcaggacccc
     2101 gacgcggtgg tgtacatcac cgagacgctg gaagcgggcg gtcgtgccga gaccgctgag
     2161 cagtggctga ccgcggcact atccaccgcg ttgcaacggc ggcaggagct ggcttcccgg
     2221 cacggagagc cggattacga gcaggccgca gcggtggcgt tcatgttggc ccagagccgg
     2281 caccagatcc gtggtgatct ggacttgcca cacgatgact acgatgacct cgccgaccgc
     2341 ttgatgagcg tcgtgcaggc tgcgctcggc actgacgagc cggactatga atcggccacc
     2401 ctgctgttct ggccgcagcc agagttcgat cggctcctgc ggtgctggcc ttccctcgcc
     2461 gaggaatacg gccggacctg ggatgagcac cgaatcacgg tgcagaagac gctgttgctg
     2521 tggtcggagt ccagcggtct ccggttgggg ttgctgcctg gttctgtcga ggagttggcc
     2581 gcccacgccg agcgcaccgg cgcagatcca accgaccccc aggttcgtca ggactacgct
     2641 gagcatctga ccgggcccgc gcgggagatc gcctggcctc ccggccgcaa ccacacctgc
     2701 tggtgtggct ccgcacataa gtacaagaag tgctgcctct cccgggcccg tacctgattg
     2761 agctgcacct gcagtcgccg agtacagaag agcgatgaat acccggcggc gtgcgtccgg
     2821 gcggggtgca cggtgcgtga cgggtagact ggagtggttg cgcggcacgt cagtggccgc
     2881 tgaagggaac cgacctccgt gaccgagatc accctgccgc cggacggaga ccgcgtcgag
     2941 ccggtcgaca tccaggagga gatgcagcgc tcctacatcg actacgcgat gagcgtgatc
     3001 gttggacgcg cgctgccgga cgtccgtgat gggctcaagc cggtgcaccg ccgggtgctg
     3061 tactcgatgt acgactccgg gttccggccg gatcgtg
//
LOCUS       DASVXZ010000771         3501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1253634, whole genome shotgun sequence.
ACCESSION   DASVXZ010000771 DASVXZ010000000
VERSION     DASVXZ010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3501
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1253634"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..386
                     /locus_tag="VF788_16460"
     CDS             150..386
                     /locus_tag="VF788_16460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX8935740.1"
                     /translation="MVQAYILIQTEVGKAAAVAATVSSLPGVASAEDVTGPYDVIVRA
                     EAADVDQLGQLVVARVQLVQGITRTLTCPVVHLS"
     gene            398..937
                     /locus_tag="VF788_16465"
     CDS             398..937
                     /locus_tag="VF788_16465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3515 domain-containing protein"
                     /protein_id="HEX8935741.1"
                     /translation="MSKISERSAVTPRWPLGIALALVVALVVGVLIAASMVRNQPLPP
                     LGLAAVSAPAASSAECARLLAALPGNLDGGELGALERRQLNAPVPAGVAGWGEPPVVL
                     RCGLDRPPDLTATSRLMSVSGVQFLEIPSRGMSTWVAVDRSVYVAVSLPPNSGSGPLQ
                     QIATIISRAQPRQDVNVPH"
     gene            complement(945..1469)
                     /locus_tag="VF788_16470"
     CDS             complement(945..1469)
                     /locus_tag="VF788_16470"
                     /inference="COORDINATES: protein motif:HMM:NF017170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF742 domain-containing protein"
                     /protein_id="HEX8935742.1"
                     /translation="MRVIGDARAGGTAMFLSFGRDEPAIPAADPHATMPDPGSELADE
                     VTDPREANAAGEWDGSEDFRFAVRPYTWTRGRTRPVQDLAFETLISTSEEGRDLTSIC
                     SAEHAPIAELCAEIRSVAEVAALLALPLGVARVLLADMIDAGLLHMHSDSTGGGGAPD
                     LPLLERVLDGLYRL"
     gene            complement(1652..2752)
                     /locus_tag="VF788_16475"
     CDS             complement(1652..2752)
                     /locus_tag="VF788_16475"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase family protein"
                     /protein_id="HEX8935743.1"
                     /translation="MMERKLRVAVVFGGRSSEHAISCISAGSVLTHLDQTRFEVIPVG
                     ISPDGAWFLGTGEPADLAIRDRMLPTVDGTGVALALPGDPTRRELVRIAGDRVGEVLS
                     EVDVVFPVLHGAFGEDGTIQGLLELADLPYVGSGVLASAAGMDKEFARKLMRAEGLPV
                     TDTVVLRGKDATLSAAQRDRLGLPVFVKPARAGSSVGITKVAHWSELASAIATARSVD
                     PKVLVEAAVVGREVECGVLEFPDGRVVASLPAEIRVMAKSSAGWYDFDAKYLDDACEF
                     DIPAKLDDDLTTELQAMAVAVFRSLDCQGLARVDFFVGPDGALTVNEINTMPGFTSIS
                     MYPRMWAVTGLDYSTLLSILIDTAMTRGTGLR"
     gene            complement(2762..>3501)
                     /locus_tag="VF788_16480"
     CDS             complement(2762..>3501)
                     /locus_tag="VF788_16480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8935744.1"
                     /translation="VAALPDRARAVYCTPAHQFPLGATMPAGRRLGLVAWARERAAWV
                     IEDDYDGELRHHGAPLPLLATLGRDVVVHLGTASKILTPTLGIGWMAAPAEVVAAVCR
                     YRSGIGVRPSPAGQQVLTALAASGDLSRHLRWVRRELLSRRELLVGALRTAGLPMRGD
                     QAGAHLVVDLPGADVERSVVSHALREGLLLDGLARCHDGLPAWYGVTLGYAAPQSASV
                     LAAALPRLNALLAAGLMAGTPPSCHRE"
BASE COUNT          626 a         1224 c         1103 g          548 t
ORIGIN      
        1 gaattctccc agctcagcga ccaattccgg agcagacagc ggcgggtcag gcgggatacc
       61 agcggctgcg cacatcatca cacccccgat ccaggcgcgg taggttcgtt cttaccccca
      121 tccagcagac gccgacggag ggccgcgccg tggttcaggc atacatcctc atccagaccg
      181 aggtcggcaa agctgctgcg gtggccgcga cggtgtcgag cctgcccggc gtggcgagtg
      241 cggaggacgt caccggcccc tatgacgtga tcgtgcgagc ggaggccgca gacgtggatc
      301 agctcggcca gctcgtggtg gccagagtgc agcttgtgca gggcatcacc cgcactctga
      361 cttgccctgt tgtccatctg tcctgacaat ggccgacttg tcgaagatct ctgagcggtc
      421 ggctgtcacg ccgcgttggc ctctggggat agcactggct ctggtggtgg cactcgtggt
      481 gggagtactc atcgctgcct cgatggtgcg taaccagcct ctgccgccgc tggggctagc
      541 cgcggtatcg gcgccggcgg cgagttccgc ggaatgcgct cggctgctgg ccgcactacc
      601 gggcaacctg gacggcggtg agctaggcgc cctggaacgc cggcagctca acgcgccggt
      661 cccagcgggc gtagccggct ggggcgagcc tccggtggtg ctgcgctgcg ggctcgatcg
      721 ccccccggac ctcacagcaa cctcgcggct gatgtccgtc tccggtgtgc aattcctcga
      781 gattcccagc cgtgggatga gcacctgggt cgcggtggac cgatcagtct acgtcgcggt
      841 ttccctgccg ccgaatagtg gcagtgggcc actgcagcaa atcgcgacca tcatttcccg
      901 cgcgcagccc cggcaggacg tgaacgtccc gcactgagcg cacctcataa ccggtacaaa
      961 ccgtccagaa cccgctccaa cagtgggagg tccggcgcgc caccgccgcc ggtggaatcg
     1021 ctatgcatgt gcagtaagcc agcatcgatc atgtccgcta gtagcacccg ggctaccccc
     1081 agcggcagcg cgagcagggc cgcgacctcc gcgacggagc ggatctcggc gcacagctcg
     1141 gcaatcgggg cgtgctccgc cgagcaaatc gatgtcaggt ctcgaccttc ctcgctggtg
     1201 gagatcagcg tctcaaaggc aagatcctga accgggcggg tgcgcccccg ggtccaggtg
     1261 tagggacgga ccgcgaaccg gaaatcctcc gacccatccc attcgccggc tgcgttggct
     1321 tctctcggat ccgtcacctc gtcagctagc tcgctgccgg gatcgggcat ggtggcgtgc
     1381 ggatcagccg cgggaatagc gggttcgtcg cgcccaaatg acaggaacat cgcggtacct
     1441 cccgccctgg cgtcaccaat cacacgcacg gtcagacacc ccgaggcgat ggccagttga
     1501 gcgtccgcgc gaggcgcgcc agcggatcac gctgggcggg ccccacctgc ttaactagcc
     1561 cgccataact aggtcgctgg ccttcacccg tttgtcccag ccatttcgga cgaatcggcg
     1621 ctagaccagc ccaatggccc agcgcaatac ctcagcgcaa tcccgtgccg cgggtcatcg
     1681 cggtgtcgat cagtatcgac agcaaggtgg agtagtccag gccggttact gcccacatcc
     1741 gcgggtacat tgaaatcgag gtgaagccgg gcatcgtgtt gatctcatta acggtcagcg
     1801 caccatcggg cccgacgaaa aagtccaccc gagcaagacc ctggcagtcc agtgaccgga
     1861 acacggcaac ggccatcgcc tgcaattctg tggtgaggtc gtcgtccagc ttggcgggga
     1921 tatcgaactc gcacgcgtcg tccaggtatt tggcgtcgaa gtcgtaccaa cccgcggaac
     1981 tcttggccat cacgcgaatc tccgcgggaa gcgacgcaac tacgcgaccg tcgggaaact
     2041 ccagcacccc gcactcgacc tcgcgaccga ccaccgccgc ttccacgagc accttgggat
     2101 cgacactgcg agcggtagcg atcgcggagg ccagctcaga ccagtgcgct accttcgtaa
     2161 tccccaccga cgagcccgct ctggccggtt tgacaaagac cggaaggccg agccggtcgc
     2221 gctgcgctgc gctgagagtg gcgtccttgc cgcgcagcac cacggtatcg gtcaccggca
     2281 aaccctcggc acgcatcagc ttgcgggcaa attccttgtc cattcctgcc gcgcttgcca
     2341 gcacgccgga accgacataa ggcaggtctg cgagctccag tagtccctgg atagtgccgt
     2401 cttcgccgaa cgccccgtgc aataccggga ataccacgtc cacctcgctg aggacctcgc
     2461 caacccggtc gcccgcgata cgcaccagtt cccgacgagt cggatcaccg ggtagggcga
     2521 gcgctacgcc ggtgccgtcc acggtgggca gcatccggtc ccggattgcc agatcggccg
     2581 gctcgccggt tcccaggaac cacgccccgt cagggctgat gccgaccgga atgacctcga
     2641 atcgggtctg gtccaggtgg gtcagcacgc tacccgccga tatgcaggaa atcgcatgtt
     2701 cgctgctgcg gccaccgaag acgacggcaa cgcgcagctt gcgttccatc atggcggcac
     2761 cctactcccg gtgacatgac ggcggagtcc ctgccatcag cccagctgcc aacagggcat
     2821 tcagccgagg taacgccgcg gcgagcaccg aggcgctctg gggcgcggcg taaccgagag
     2881 tcactccata ccaggcgggc agcccgtcgt gacagcgtgc cagcccgtcg agcaagagcc
     2941 cttctcgcaa agcgtgactt accacgctgc gttcgacgtc tgcacccggg aggtctacca
     3001 ccagatgcgc tcctgcctga tcgccacgca tcggcaggcc cgctgtgcgc agtgcgccca
     3061 ccagcagctc acgccggctg agcaactcgc gccggaccca acgcaggtgc cgggacagat
     3121 ccccggacgc cgcgagcgcg gtcagcacct gctgaccagc cggcgatggc cgcaccccga
     3181 tgccggagcg atacctacag acagcggcca ccacctcggc gggtgcggcc atccacccga
     3241 tccccagcgt cggagtgagg atcttgcttg ccgtaccgag atgaaccacc acgtcacgtc
     3301 ccagggtcgc cagcaacggc aggggcgcgc cgtggtgacg cagctcgccg tcgtagtcat
     3361 cctcaatcac ccacgcggct cgctccctgg cccaggccac cagcccgagc cggcgcccgg
     3421 caggcatggt ggcacctaag gggaattggt gtgccggtgt gcaatacacc gcgcgggcgc
     3481 gatcgggtaa cgcggcgacc a
//
LOCUS       DASVXZ010000772         7062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_268382, whole genome shotgun sequence.
ACCESSION   DASVXZ010000772 DASVXZ010000000
VERSION     DASVXZ010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7062
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268382"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..897
                     /gene="pyrR"
                     /locus_tag="VF788_16485"
     CDS             307..897
                     /gene="pyrR"
                     /locus_tag="VF788_16485"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009075803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEX8935745.1"
                     /translation="MSSPPGAGAVGEAGPPRQRELLSAAEVARIVARMAHQIIERTAP
                     EAVVMVGIPTRGVPLANRLADRIREFGGPRPGIGTLDITLYRDDLRRRPTRPLQATQL
                     PDGGLDDALVVLVDDVLYSGRTVAAALDALREYGRPRAVQLAVLVDRGHRELPIRADY
                     VGKNLPTSRDEEVGVLLAETDGTDAVVIRAYDRGQR"
     gene            894..1865
                     /locus_tag="VF788_16490"
     CDS             894..1865
                     /locus_tag="VF788_16490"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005437459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEX8935746.1"
                     /translation="MKHLLTTTDLARETVTALLNTADALKQSLLGREVRKLPTLRGRT
                     VVTLFYEASTRTRASFEIAGKWMSADVVNISAGGSAVVKGESLRDTALTLAAMGADCV
                     VIRHPASGAAHRLASWIPTHVINAGDGTHQHPTQALLDAATLRERLGDLNGRTVTIVG
                     DVLHSRVARSNIELLITLGARIHLVAPPTLLPWGVQHWGSAQRWPITVGHDLDAALPG
                     SDAVMVLRVQAERMQGGFFPSAREYSISYGLTETRLALLPEHAVVLHPGPMLRGMEIA
                     YSVADSPRAAITEQVRNGVHVRMAVLYHLLAAQETAGGAGNQTQEQA"
     gene            1862..3157
                     /locus_tag="VF788_16495"
     CDS             1862..3157
                     /locus_tag="VF788_16495"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX8935747.1"
                     /translation="MTRPLLVRGIRPYGTGEPIDVLVRGGVIAELGTGLEDTGADVLD
                     GGGLVALPGLVDLHAHLREPGREDAETIATGSAAAALGGYTAVFAMANTDPVADTAVV
                     VEHVYRRGREVGLVDVHPIGAVTAGLLGERLAELGAMAASAAEVRVFSDDGVCVHNPL
                     LMRRALEYTRGLGCVIAQHAEDPRLTAGAQAHEGETAARLGLTGWPAAAEESIVARDC
                     LLARDAGAALHVCHVSTAGTIEVLRWAKERGIRVSAEVTPHHLLLTDERLAGYDPVNK
                     VNPPLRTSTDTAALRAALTEGIVDCVATDHAPHAAQDKDCEWSAARPGMLGLQTALSV
                     VVATMVQPGLLDWRGVARVMSERPARIGGATDQGRPIAVGEPATLILVDPDASWTVRG
                     AQLASLAENTPYEGMELPCRMVLSMLRGEITTEDGKVQC"
     gene            3172..4386
                     /gene="carA"
                     /locus_tag="VF788_16500"
     CDS             3172..4386
                     /gene="carA"
                     /locus_tag="VF788_16500"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEX8935748.1"
                     /translation="MTGGPAVLVLEDGTIVRGESYGSVGQTLGEAVFATGMTGYQETL
                     TDPSYRRQIVVATAPHIGNTGWNDEDDESSRIWDAGYVVRDPARVPSNWRSARPLAEE
                     LSRQGVVGISGVDTRALTRRLREHGSMRSGIFSGDALAAPSQLIARVLASPSMTGADL
                     VGEVTVAEPFIVPAAAERRFRVVALDLGIKYNTPRMLAARGVETHVLPATVTLEQVLE
                     REPDGVFLSNGPGDPATATHAVALTREVLARRVPLFGICFGNQILGRALGRGTYKMRY
                     GHRGINIPVVEHATGRVAVTSQNHGFAVTGEPGERFDSDFGPAVVSHFCPNDGTVEGL
                     TCLDIPAFSVQYHPEAAAGPHDAAYLFDRFCQLMVVQNRHSVPNGDLAGGDSRDSAPN
                     DTRERRDDGAQR"
     gene            4370..>7062
                     /gene="carB"
                     /locus_tag="VF788_16505"
     CDS             4370..>7062
                     /gene="carB"
                     /locus_tag="VF788_16505"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEX8935749.1"
                     /translation="MGRRDDISHVLVIGSGPIVIGQACEFDYSGTQACRVLREEGLRV
                     SLVNSNPATIMTDPEFADATYIEPITPEFVEKVIAAERAAGFPVTALLATLGGQTALN
                     TAVALYERGVLERYGVELIGANIEAIQRGEDRLKFKDVVRSVGAEVPHSAVCSSLDEA
                     REAADELGLPVVIRPSYTMGGLGSGMAHSVEELARLSSLGLASSPVHQVLIEESVLGW
                     KEYELELMRDHRDNVVVVCSIENIDPMGVHTGDSVTVAPALTLTDREYQHMRDVGIAV
                     LREVGVDTGGCNIQFAVHPRTGRLVVIEMNPRVSRSSALASKATGFPIAKIAAKLAIG
                     YTLDEITNDITGETPACFEPTLDYVVVKVPRFAFEKFPGADPTLTTTMKSVGEAMALG
                     RSFPEALGKALRSMETSVAGFWTKPDPPDATVRSELSALAIPHDGRLYTVERALRLGA
                     TVVQVVEASGIDPWFVDQIAGLVELRAELVAAPELDEPLLRRAKRAGISDRQLAALRN
                     DLTEPEITALRHRLGVRPVYKTVDTCAAEFAARTPYHYSAYESAPEDGAEPETEIAEQ
                     RERPKVIILGSGPNRIGQGIEFDYSCVHAAMALRSSPSPPGGYETVMINCNPETVSTD
                     YDTADRLYFEPLTFEDVMEVVHAEQASGTVAGVIVQLGGQTPLGLAQRLADAGVRVVG
                     TPPAAIHLAEDRGSFGAVLERAGLPAPAYGTATSFEEARKIADEIGYPVLVRPSYVLG
                     GRGMEIVYDEQHLADYINRATEITPDHPVLVDRFLDDAVEIDVDALYDGHELYLGGVM
                     EHIEEAGIHSGDSACALPPITLGAGEIARIREATEAIARGIGVVGLINIQFAIGSDVL
                     YVLEANPRASRTVPFVSKATGVTLAKAASRIMLGETVAQLRA"
BASE COUNT         1114 a         2343 c         2439 g         1166 t
ORIGIN      
        1 ccttggcata gtcgcccatc tggccccttc tccttcttca gaccccgacc agtcaacgcc
       61 ttggggcgcc ccgcgaaaat cgggatgata cggagagtaa tgctgcgctg agtaatcccc
      121 taggtcaagc catcgggggc cgaagaccgc gcacagtcac gtacaccacc cggacggggc
      181 agtgggtgcg cggccacaac gagcgctggg gccgcagtga taacgtccgg tcggggcccc
      241 ggcgaccagt cggagcacct gacgtccttt aaggcccgtc ccgtgaggcg gggaaggagg
      301 tccaccgtgt cgtccccccc cggggcgggc gcggtgggcg aggcagggcc cccgcggcag
      361 cgtgagctgc tctcggcggc cgaggtcgcg cgcatcgttg cccgtatggc gcatcagatc
      421 atcgagcgca ccgcccctga ggcggtggtg atggtcggta ttcccactcg tggcgtcccg
      481 ctggcgaacc ggttggctga tcgtatccgt gagttcggcg ggccccggcc gggtatcggc
      541 acgctcgaca tcacgctcta ccgcgatgac ttgcggcgcc ggccgacccg tccgttgcag
      601 gccacccagc tgcccgacgg cggcctggat gatgcgctcg tcgtgctggt cgatgacgtg
      661 ctgtactccg gacgcaccgt ggcggccgcg ctggacgcgc tgcgcgagta cggtcgcccc
      721 cgcgcagtgc aactcgctgt gctggtcgac cgcggccatc gtgagctgcc gattcgggcc
      781 gactacgtgg gtaagaatct gccgacctcc cgggacgagg aagtcggtgt gctgctcgcc
      841 gagacagacg gcaccgatgc cgtcgtgatc cgcgcctacg atcgggggca gcggtgaaac
      901 acctgctcac caccactgat ctcgcacgcg agactgtcac cgcgctgctg aacacggcgg
      961 atgcgctcaa gcagtcactg ctgggccgcg aggtgcgcaa gttgcccacg ttgcgtggcc
     1021 gcaccgtggt cacgctgttc tacgaggctt ctacccggac ccgggcctcc ttcgagatcg
     1081 cgggcaagtg gatgagcgcc gacgtggtca acatctcggc gggtggatct gccgtggtca
     1141 agggagagtc gttacgcgac accgcgctta ccctcgccgc gatgggcgcc gactgtgtgg
     1201 tgatccgcca tccggcttca ggggcagcgc atcgcctcgc cagctggata cccacgcacg
     1261 taatcaacgc cggtgatgga acccatcagc acccgactca ggccctgttg gatgccgcta
     1321 ctctgcgtga gcgattgggc gaccttaatg ggcggaccgt caccatcgta ggcgacgtcc
     1381 tgcacagccg ggtcgctcgc tcgaacatcg agctattgat cactctgggt gcccggatcc
     1441 acctcgtcgc tccccctacc ttgctgccat ggggagtgca gcactgggga agcgcgcagc
     1501 gttggccgat cacggtgggg cacgacctcg acgctgcact acccggttcc gacgcggtga
     1561 tggtgctgcg ggtacaggcc gagcgaatgc agggcgggtt cttcccctcc gcccgggagt
     1621 attcgatcag ctacgggctc actgagacgc gcctggcgtt gctgcccgag cacgccgtgg
     1681 tgctgcaccc ggggcccatg ctgcgcggca tggagatcgc gtactcggtg gccgattccc
     1741 cacgcgccgc gatcaccgaa caggtgcgca acggggtgca cgtccggatg gcagtgctct
     1801 accacctgct cgcagcccaa gagaccgccg gcggagccgg caatcagact caggagcagg
     1861 catgacacgg ccgttgctgg tgcggggcat ccggccctac gggacgggcg agccgatcga
     1921 cgttctggtc cgcggcggcg tgatcgcgga actgggcacc gggttggagg acaccggtgc
     1981 cgacgtgctc gacggtggcg ggttggtagc cctgccaggc ttggtcgacc tgcatgcgca
     2041 cctccgcgag cctggccgcg aggacgctga aacgatcgcc accggctcag cggccgcggc
     2101 gctgggtggc tacaccgcgg tgttcgcgat ggccaacacc gacccggtgg ccgataccgc
     2161 ggtggtcgtc gagcacgtgt accggcgcgg ccgcgaggtg gggctggtgg atgtgcaccc
     2221 gatcggcgcg gtcaccgccg ggttgctcgg cgagcggctc gccgagctgg gcgccatggc
     2281 cgcctctgcc gccgaggtgc gggtgttctc cgacgacggg gtatgcgtgc ataacccgct
     2341 gctgatgcgc cgtgccctgg agtacacccg tgggctgggc tgcgtcatcg cgcagcacgc
     2401 cgaggacccc cggctcaccg ctggggcgca ggcccacgaa ggggagaccg ctgcccggtt
     2461 agggctgacc ggctggccgg cagccgcgga ggaatcgata gtggcccgag actgcctgct
     2521 ggctcgggac gccggcgcgg cgttgcacgt ctgccacgtg tccactgcag gcacgatcga
     2581 ggtgctgcgt tgggctaaag agcgcgggat ccgggtctcc gctgaggtca ccccgcatca
     2641 tctgctgctc accgatgagc gcttggccgg ctatgacccg gtcaacaagg taaatccgcc
     2701 gctgcgcacc tctactgaca ccgcggcgct gcgcgccgcg ctgacggagg ggatcgtgga
     2761 ctgcgtggca accgaccatg ctccgcacgc tgctcaggac aaggactgcg aatggtctgc
     2821 ggcccggccg ggcatgctgg ggctgcagac cgctctgtcg gtggtggtgg ccacgatggt
     2881 ccagcccggt ctgctggact ggcggggggt ggcccgggtg atgagcgagc gccccgcccg
     2941 catcggtggc gcgaccgacc aggggcgccc catcgccgta ggtgagccgg cgactttgat
     3001 cctggtagac cccgacgcca gctggacggt acgtggcgcg caactggcca gcctggccga
     3061 gaacaccccc tatgagggga tggagctgcc ctgccggatg gtgctcagca tgctccgcgg
     3121 cgagatcacc acagaagacg ggaaggtgca gtgttgacca aacctacggc gatgaccggc
     3181 ggaccagcgg ttctcgtgct ggaagacggc accatcgtgc gcggcgagag ctacggttcg
     3241 gtgggccaga cgctgggtga ggcggtcttt gccaccggaa tgaccgggta ccaggagact
     3301 ctcaccgacc cgtcctaccg tcgtcagatc gtcgttgcca ccgctccgca tatcggcaac
     3361 accggctgga acgacgagga tgatgagtca agccggatct gggacgccgg ttacgtcgtg
     3421 cgggatcccg cccgggtccc atccaattgg aggtccgccc gcccgctggc cgaggagctt
     3481 tcccgtcagg gtgtcgtggg gatctccgga gtggacaccc gtgcgttgac ccgccggctt
     3541 cgcgagcacg gctcgatgcg gtcggggatt ttctccggcg acgcactggc ggcgccatcg
     3601 cagctcatcg cgcgggtgct ggccagccct tccatgaccg gggcggacct ggtcggcgag
     3661 gtcaccgtcg cagagccctt catcgtgccc gccgccgctg agcgccgctt ccgcgtggtg
     3721 gcgctggacc tgggaatcaa gtacaacacc ccgcggatgc tggccgcccg gggcgtcgag
     3781 acacacgtgt tgcccgccac tgtcaccctg gagcaagtgc tggagcggga acccgacggg
     3841 gtgttcctgt cgaacggccc gggcgatccc gccacggcaa ctcacgccgt ggccctgacc
     3901 cgcgaggtgc tcgcgcggcg agtgccgctg tttggcatct gcttcggtaa ccagattctc
     3961 ggccgggctc tggggcgtgg cacgtacaag atgcgctatg ggcatcgcgg gatcaacatc
     4021 ccggtcgtcg agcatgcgac cgggcgcgta gctgtcacct cgcagaacca cggcttcgcc
     4081 gtcacaggcg agcccggcga gcgcttcgac tccgacttcg gcccggcggt ggtcagccac
     4141 ttttgtccca atgacggcac cgtcgagggc ttgacgtgcc tggacatccc agctttcagc
     4201 gttcaatacc atccagaggc agccgccggc ccgcacgatg cggcctacct gttcgaccgc
     4261 ttctgccagc tgatggtcgt ccagaatcgc cattcagttc cgaatggcga tctcgccggg
     4321 ggcgacagcc gcgattcggc tccgaatgac actcgagaga ggagggatga tggggcgcag
     4381 agatgatatc tcgcatgtgt tggtgatcgg gtcggggccg attgtgattg ggcaggcttg
     4441 tgagtttgac tattcgggga ctcaggcgtg ccgggtgctg cgagaggagg ggctgcgggt
     4501 cagcctggtc aactccaacc cggcgacgat catgacagat ccggagttcg ccgatgccac
     4561 ctacatcgag ccgatcactc cggagttcgt cgagaaggta atcgccgctg agcgcgctgc
     4621 cgggtttcct gtcacagcgt tgctggccac cttgggcggt cagacagcgc tcaacaccgc
     4681 tgtggccctg tacgagcgtg gagtgctgga gcgttacggc gtcgagctga tcggcgcgaa
     4741 cattgaggcc atccagcgcg gtgaggaccg gctgaagttc aaagatgtgg tgcgctcggt
     4801 gggtgccgag gtacctcata gcgccgtctg ctcctcattg gacgaggctc gggaagcagc
     4861 tgatgagctt ggactgccgg tagtgatccg gccgtcctac accatgggcg ggcttggctc
     4921 cggaatggcg cactcagttg aggaactcgc ccgcctgtct tcgctgggat tggcatcaag
     4981 cccggtgcac caggtgctca tcgaggagag cgtgctgggc tggaaggagt atgagctcga
     5041 gctgatgcgc gaccaccggg acaacgtggt ggtggtgtgc tcgatcgaga acatcgaccc
     5101 gatgggcgtg cacaccgggg attcggtcac cgtagctccg gccctgacgt tgaccgaccg
     5161 cgagtaccag cacatgcgcg acgtcggcat cgcggtgctt cgcgaagtcg gggtggacac
     5221 cggcggctgc aacatccagt tcgcggtgca tccgcgcacc ggccgcctgg tcgtgatcga
     5281 gatgaacccg cgggtgtcgc gatcgagcgc gttggcgtcc aaagccaccg ggtttcccat
     5341 tgccaagatt gccgcgaagc tagcgatcgg ttacaccctc gacgagatca ccaatgacat
     5401 caccggggag accccggcgt gcttcgagcc caccctcgac tacgtcgtcg tcaaggtgcc
     5461 ccggttcgcc ttcgagaaat ttcccggcgc ggaccccacc ctgaccacca cgatgaaatc
     5521 ggtcggtgag gcgatggcgc taggccgctc gttccccgag gcgctgggca aggcgctgcg
     5581 ctcgatggag acttcggtcg ccggtttctg gaccaagccc gatccaccgg atgccacggt
     5641 gcgctcggag ctctcggcgc tggctattcc ccatgacggg cggctctaca ccgttgagcg
     5701 ggcgctgcgc ctcggcgcga ccgtggtgca agtcgtggaa gcctccggca tcgatccgtg
     5761 gttcgtcgac cagatcgcgg gcctggtcga gctgcgcgcc gagcttgttg ccgcgccgga
     5821 actggacgag ccgctgctcc gccgcgccaa acgcgcgggc atctccgacc ggcagctcgc
     5881 tgccttgcgc aatgacctca ccgaacccga gatcaccgca ctgcggcacc ggctaggtgt
     5941 gcgtccggtc tacaagaccg tggacacctg cgccgccgag ttcgccgccc gcaccccgta
     6001 ccactactcc gcctacgaga gcgcccccga ggacggggcc gagcccgaga ccgagatcgc
     6061 tgagcagcgg gaacgaccca aagtgatcat tctggggtct ggaccgaacc ggatcggcca
     6121 gggcatcgag ttcgactatt catgcgtgca cgccgcgatg gcgctgcgtt cgtctcccag
     6181 cccacccggc ggttacgaga cggtgatgat caactgtaac ccggaaacgg tgtcgactga
     6241 ctatgacacc gctgaccggt tgtacttcga gccgctgacc ttcgaagacg tcatggaggt
     6301 ggtacacgcc gagcaggcct cgggcaccgt ggcgggtgtg atcgtccagt tgggcggcca
     6361 aaccccactg ggcctggcgc agcggctggc ggacgcgggc gtccgggtgg tcggcacacc
     6421 cccggcggcg attcacctcg cagaggatcg cggttcgttc ggcgcggtgc tggagcgcgc
     6481 ggggttaccc gccccggcct acggcactgc cacgtcgttc gaggaggccc gaaagatcgc
     6541 cgacgagatc ggctacccgg tgctggtccg cccttcctac gtgctcggcg gccgcggcat
     6601 ggagatcgtc tacgacgagc agcacctggc cgactacatc aaccgggcca ccgagatcac
     6661 tcccgaccac ccggtgctcg tcgaccggtt cctcgacgac gcggtcgaga tcgacgtgga
     6721 cgcgctctac gacgggcacg agctctacct cgggggcgtg atggagcaca tcgaggaggc
     6781 cggcatccac tccggcgact cggcgtgcgc gctgccgccg atcacgctcg gggccggcga
     6841 gatcgcccgt atccgtgagg ccaccgaggc catcgcccga ggcatcgggg tggtcggtct
     6901 gatcaacatc cagttcgcga tcgggtccga cgtgctctac gtgctcgagg ccaacccgcg
     6961 ggccagccgc acggtgccgt tcgtctccaa ggccaccggc gtcaccctcg ccaaggcggc
     7021 gtcccgcatc atgctgggcg agaccgtcgc acagctgcgg gc
//
LOCUS       DASVXZ010000773         1617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1612045, whole genome shotgun sequence.
ACCESSION   DASVXZ010000773 DASVXZ010000000
VERSION     DASVXZ010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1612045"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..786
                     /locus_tag="VF788_16510"
     CDS             163..786
                     /locus_tag="VF788_16510"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial transcriptional activator
                     domain-containing protein"
                     /protein_id="HEX8935750.1"
                     /translation="MDRSTATECLWPGASRGRAEANLRSALWRGKRAGTTTLIDCTGP
                     RLRLAPQVRVDLHGLLGQARRIVGTRPAPGDPTRREAIAGLSRELLPSWSEDWLLPER
                     ERWDQVRLHALETMALQYLAAEDYLTALEVALAAVSVDSIRESAHRIVVKVHIAEGNS
                     ASAIRHYQWYRGLVQRELGVTPSRQMDELIHSCVPVSTRPGVGSRRA"
     gene            complement(798..>1617)
                     /locus_tag="VF788_16515"
     CDS             complement(798..>1617)
                     /locus_tag="VF788_16515"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEX8935751.1"
                     /translation="SVRFIADDASHYKALKRADRIRPSKHDGSVQLRFEGVDAPELHY
                     GTAAQPLGDTARDALLGWIGFTSITYDQNQPTRVRSATPTAVQAAILAQMAEANGRPV
                     AYVLVKTTNQLPKDGTWVNVEQLLLDQSLNVRLLAEGQAYYTVYTSTPASHRRHLREV
                     ADKTRTGGLGVWHQDTTAEFALADQASIGPHGQLILPKLFRRCTDYLKAVNKGFTGNL
                     GDWLIASSTTPSRDENDRVLLRDATEVRLSDLLQQRNEHIAFQADLLDLTFVEK"
BASE COUNT          301 a          456 c          530 g          330 t
ORIGIN      
        1 cgcgtgcaaa agttatagcc gggagcgact ttgaatttac cacagtacga ctgcggacta
       61 accttgctcg gaggattcca gctgtgtgcg ccgggtagct gcgcactacc acgtggagcg
      121 cagcggttgc tggccctact agcgctgaac aacgactgtg ccgtggatag gtcgacggcg
      181 accgagtgcc tctggccggg cgccagtcgc ggccgcgccg aggcaaacct caggtctgcc
      241 ttgtggcggg gtaagcgggc cggtaccacg acattgatcg actgcacagg tccccgactt
      301 cgtcttgccc cgcaggtccg ggtcgacctg catggactgc tcgggcaagc tcgccggatc
      361 gtcgggacac gtcctgcgcc gggcgacccc acacgccgag aggccatcgc tggcttgtcc
      421 cgagagttgc tgccgagttg gtcagaagac tggctgctac ctgaacggga acgatgggac
      481 caggtgcggc tgcatgcact cgagacgatg gccctgcaat atctggcggc cgaagactat
      541 ttgaccgcac tcgaggtggc gctcgcagct gtctccgttg attccatccg ggaaagcgca
      601 catcggatcg tggtgaaggt tcacatcgcg gaaggaaact cggccagcgc gataaggcat
      661 taccaatggt atcgagggct agttcaacgc gagctcggcg tcacaccctc ccggcagatg
      721 gatgaattga tccactcgtg tgtgcccgtt tcgacacgtc caggggttgg cagcagacgg
      781 gcatgaataa agtaaggtta tttctccacg aaggtgagat cgagtagatc ggcctgaaat
      841 gcgatgtgct cgttgcgctg ttgcagcaga tcgctgagtc ggacctcggt cgcgtcccga
      901 aggagtactc gatcgttttc gtcccgtgat ggcgtcgtcg agctggcgat caaccagtcg
      961 ccaagattgc cggtgaagcc tttgttcacc gctttgaggt agtcggtgca ccgccggaag
     1021 agtttaggca agatgagctg accgtgagga ccgatcgacg cctgatcggc caaggcgaac
     1081 tctgcagtgg tgtcttggtg ccagactccg agtccgccgg tacgtgtctt gtcggcgacc
     1141 tctcgcaaat gacgacggtg gctggcagga gtggaggtat acaccgtgta ataagcttgg
     1201 ccctctgcga ggagccgcac attgaggctt tggtcgagca agagctgttc gacgtttacc
     1261 cacgtgccgt ctttaggcag ttggttagtg gtcttgacca gaacataggc gactggtcgg
     1321 ccatttgctt ccgccatctg ggccaggatg gccgcctgta ctgcggtagg cgttgcgctg
     1381 cggacccggg tcggttgatt ctggtcgtac gtgatggacg tgaagccgat ccagccgagc
     1441 agcgcatctc tggccgtgtc cccaaggggc tgagcggccg ttccatagtg cagctccgga
     1501 gcgtccacgc cctcgaagcg aagttggaca ctaccgtcgt gtttggatgg ccggatccgg
     1561 tcggcccgct tcagcgcctt gtagtgcgaa gcatcgtcgg caatgaagcg gaccgag
//
LOCUS       DASVXZ010000774         1965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_447410, whole genome shotgun sequence.
ACCESSION   DASVXZ010000774 DASVXZ010000000
VERSION     DASVXZ010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447410"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..271
                     /locus_tag="VF788_16520"
     tRNA            199..271
                     /locus_tag="VF788_16520"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:232..234,aa:Ala,seq:ggc)
     gene            complement(772..1413)
                     /locus_tag="VF788_16525"
     CDS             complement(772..1413)
                     /locus_tag="VF788_16525"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEX8935752.1"
                     /translation="MAPLDRWKHEATAFDRVLFFSDAVFAIAVTLLVLPLADVQLAPT
                     HVGSQLVGLIPQMLTFALSFIVTGLFWMSHHKWFQLVSAFDTRSLWVNMIFLLCVAFL
                     PFPTSVLAQRGDTSAATAFYAGAIAMTGVLGCTLWWYMSRHRELLTSDGAPALLHRHF
                     LSSLAAPIVFALSIPLSYGDASLAKYSWILTYPVSRLIQGATRRKKAKAAGRN"
     gene            complement(1432..1647)
                     /locus_tag="VF788_16530"
     CDS             complement(1432..1647)
                     /locus_tag="VF788_16530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935753.1"
                     /translation="MGPAQSGSLPRSGHIDHVPALVTELLMNGQDSTGDAAASIGDVL
                     SSTCVSLVAARWRSGTAAIGTTFGGPG"
BASE COUNT          330 a          591 c          719 g          325 t
ORIGIN      
        1 gcagccgcgc tggacggtgc tcgccgggct cgccaactgc ggctggggcg tcgtgcaacc
       61 gaacgagccc acgtggcgcc tgctctcgtg ggggctggtc gccccagcga ccctcgacgg
      121 cgcggcgcgc cgggcgctgc ccaggtgaga gcacccccgc cggttgtgta gactcggcga
      181 ggccgtcacg gcggtggcgg ggctgtagcg cagttggtag cgcacctcca tggcatggag
      241 ggggtcaggg gttcgaatcc cctcagctcc acttgtttgt gctggtcaga gccttgatgc
      301 tccgaccgtt tgatcgcctc ccgtacagca gtagcgggcc gatacagcag taggcccgcc
      361 tcggtctggg gctgggcgtc cgctggctcc tcgtcggtcg ggagcagcag ttgcaggggc
      421 atgttgctca cccgtcgacg gctggtcact gtgcggggct gtgctggccc gatcccgacc
      481 cgcaaacggc ggctgttatg cgaccggtga cccggctggc cggagcggcg ggggcttggg
      541 gtggagtggg gcgccggatc cggggacatt gcggctcgct gttgcggccg gcgcggctga
      601 gccttgcgag gagccgcagc tgacgcagat gggggttgat ccgtagcagg cggctggtgc
      661 ctgggtggac gttgatcgac gggtacgagc ggctgtgatc ccggctcatc gcgctggacg
      721 cgggcgtcgt atgagctgtt gccccgctat gcggcgctgt cgttccgccg gtcagttcct
      781 gccggcggcc ttggcctttt tccggcgggt cgctccttgg atcagtcgcg atacggggta
      841 ggtcagtatc cagctgtact tcgcgaggct tgcgtctccg taagacaaag gtatggacag
      901 ggcaaagacg atgggggcgg ccaggctgga caagaagtgt cgatgcagca gtgcgggggc
      961 gccgtcgctg gtgagcagtt ctctgtggcg ggacatgtac caccacagag tgcaccccaa
     1021 gacccccgtc atggcgatgg cgccggcgta gaaggctgta gcagcagacg tgtcgccgcg
     1081 ctgggcgagg actgacgtgg gaaagggcaa gaaggctacg cacagtagga agatcatgtt
     1141 gacccagagt gagcgggtgt cgaacgcgga cacgagctgg aaccatttat ggtgtgacat
     1201 ccagaatagg cccgtgacaa tgaagctcag cgcgaacgtg agcatctgag ggatcaggcc
     1261 cactaattgg gatccgacgt gagtcggggc aagctgcacg tcggcaagag gcaggacgag
     1321 gagtgtcacg gcaatcgcga agaccgcgtc actgaagaag aggacgcggt cgaaggcggt
     1381 ggcctcgtgc ttccaccggt caaggggagc catctgacac ctcgctcttg atcagcccgg
     1441 tccgccaaac gtagtgccga tcgccgctgt tcccgagcgc caccgggcgg cgaccaggct
     1501 gacgcaagtc gaagacagca catcgccgat cgacgccgct gcgtcaccag tgctgtcctg
     1561 cccgttcatg aggagctccg tcaccagcgc cggcacgtgg tcgatgtgtc cggatcgggg
     1621 tagcgaaccg gactgggcgg ggcccactcg caggccaccc tagggcctga tcagtacagc
     1681 agcggggtac agcagccgcc gcggccgacg tcgacgctca aggacgccgg cgagaccgcg
     1741 accatcagtc gcgaccatca gtgactgtcg agcatgtaga tggcatggag ggggtcaggg
     1801 gttcgaatcc cctcagctcc acctcacttc agtggctgct tgtgggtggc accggccctg
     1861 gcggttctcc gggggaggag gccggccaca gctgcgaggc aatcacggcg gcggccgccg
     1921 cgcagccgag tgccaatagc caaccgatca ctgcgatagc caatg
//
LOCUS       DASVXZ010000775         1856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_536484, whole genome shotgun sequence.
ACCESSION   DASVXZ010000775 DASVXZ010000000
VERSION     DASVXZ010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536484"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(478..1425)
                     /locus_tag="VF788_16535"
                     /pseudo
     CDS             complement(478..1425)
                     /locus_tag="VF788_16535"
                     /inference="COORDINATES: protein motif:HMM:NF016533.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0019748 - secondary metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
BASE COUNT          339 a          646 c          589 g          282 t
ORIGIN      
        1 cgcaagcaac tgacctgctg ctttgtcaca ccgtagcgtt cgccggccat aagtgcgcac
       61 caagaccgag ggggatcgtc cgaggagccc gcgcgagcgc ctcgaggaga gcgacatcgc
      121 tgagctaatc accgcttatc gcgacagcac caccgccacc tccctcgccg ctaccacgac
      181 gtgagcctct ggagcgccaa ccccctcctt caacaccgcc ggatccgccg aacaccaccc
      241 acccgacgat ccacgaagat cacaccgacc accgcatacc ccagcccact cgtgcccggg
      301 cattcaccgc gcgcacagcg gcacgagttc gtgtcacaag tcgtgtcacg cccgccgcgt
      361 cggcggtgtg atcttccgat agatccactc ggccaccacg gcatggcttg cgtcgacacc
      421 cgcgcacgga cagcggcatg agggtgcgtt ggctggcgcg gtcggtgtta ccggcgatta
      481 gttgggccgt ctggtgagcg cttcacgatg cagcagggtt gtggcgatgg tgatctgggc
      541 cgggtccagt gcggtttcgc cgtcttcgat gtcccacaac gcgttctgca gcacgcggct
      601 gagcgtccag ccggtcgccc gttgccggtc caggccgagc acctcggtga gcaggtcgaa
      661 gcggcggagc accgcgcgag ccacgtagcc ggtcgccacc acctcgtccc accggttgtg
      721 cagcgccggc agcaggtcga aaccggggtc cccggcaagc ggttcggggt cgatggccag
      781 ccagggttcc cgctgcccgg cgaggatgtt gtcgtagtgc aggtcccagt gcagcagacg
      841 gtcgccgggt tcgccgatca gctcggccat ggcggacccg caggtccgca ccagccgttg
      901 ctgggccggg tcgcgtaacc tcggcacggc gcgtggcacc tggtcgagca tggcggcggc
      961 gatgtcagcc aggtgccgta ggccctacgg cgcaggcacc gcgaccagac gcgccagcag
     1021 ttcggcgagg atctgcaggg cggcggtgtc atcggccacc gacgacagcg gccgggtcgc
     1081 gtccagccgt tccagcaaca tggtgccggt gtccgggtcg tgggcaagca gacgcaccac
     1141 gccgtctccg ttccatgccc gcagaccgat cggtgcggcg gcgttctcct cgctgaccgg
     1201 ctggagcttg agcgcgccag gcgtgccatc cgcgcggatc accggcagca cgagcgacgc
     1261 catgccatgc ccggcgggac cgtccagccg cagcgcccaa tggtccagga agtccgcggc
     1321 cagctcaggc aatgcggcta tccaggcacg gccggacgca ccactgtgct tgctatacga
     1381 ggcggccagc gcgtcgggga cgtcgacgga aatcgacgca ctcatatcga atctccttcg
     1441 tgagctccgg atcggtggaa atgacacgaa ggaggtgatg gtggtgcccg gctaccgggc
     1501 aggcgtcaac gcatgcctcc accctacccg aacacgatca tgcccgactc cggcgaagtc
     1561 aaggccatgc acacgagcgg gtacacatcg tgggcgtccg accacttccc gaaagaaccg
     1621 ctcatcgact atgagcggac attgttcgcg cgtgcgaatg aggtgtggat cccaacatct
     1681 ccacagcagc aaaagattag ggactcgcac accgaagacg cacaaacgcc cagatcagag
     1741 acccgagcag cgctcggtgg agctacttgc ctcttactcg cacactatgc aagcttctga
     1801 cctgcagctt tgccacacta tggcgctcac cagcctggtg cgtgccccag aacaaa
//
LOCUS       DASVXZ010000776         2267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1657342, whole genome shotgun sequence.
ACCESSION   DASVXZ010000776 DASVXZ010000000
VERSION     DASVXZ010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1657342"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..585)
                     /locus_tag="VF788_16540"
     CDS             complement(<1..585)
                     /locus_tag="VF788_16540"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEX8935754.1"
                     /translation="MLSVAQVLALAELMPYRKYRALILITAFCSLRWGEVTALRRCDV
                     APDGTWVRISSQFIDLVGRGLVRTPPKSRAGARTVTVPAAIRPDVIAHLRDFVAPASD
                     ALVFTMLRGGPMRRGNFNPLVKWAKVVAGIGAPSLRFHDLRHTGNTLAAPGASLRDLM
                     TRMGHDSPRAAMIYQHATTVVDRAIADRLSGLVDA"
     gene            complement(579..1112)
                     /locus_tag="VF788_16545"
     CDS             complement(579..1112)
                     /locus_tag="VF788_16545"
                     /inference="COORDINATES: protein motif:HMM:NF024502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-terminal phage integrase SAM-like
                     domain-containing protein"
                     /protein_id="HEX8935755.1"
                     /translation="MVDKKARRRFGNLRQLPSGRWQVRYRGPDGQLRSIPQTFEKKRD
                     AERTLSMIETQLMHDDWADPKRGAVKLADYAEQWVTQRPGLRPSTTQLYRRLLKNYVA
                     PHLGEMPLNKITTAVVREWRTTLLSTGLSQTMTAKAYRLLRAILMTAAAEDRLITRNP
                     CQLRGARTRSIPKNARC"
     gene            complement(1112..1327)
                     /locus_tag="VF788_16550"
     CDS             complement(1112..1327)
                     /locus_tag="VF788_16550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935756.1"
                     /translation="MDLGKTFSETAAYLNTSERFVRRLISERRIAFHHVGRHVRFALT
                     DLDAWLAASRVEPISAEVVVSVLRSVA"
     gene            1558..1845
                     /locus_tag="VF788_16555"
     CDS             1558..1845
                     /locus_tag="VF788_16555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935757.1"
                     /translation="MDAALLTIVRWAQRCRPQLAMCLATVAGLGVGLVVAYALRPSSD
                     LAMNLTVGACMVAVQLVMYALLVFSNRAVMPPPILVLVVALTVIVTLLLIL"
BASE COUNT          427 a          749 c          655 g          436 t
ORIGIN      
        1 cgcgtcgacc aggccgctga gtcggtccgc gatcgcccga tccacgaccg tcgtggcgtg
       61 ctgataaatc atcgctgccc gcgggctgtc atgacccata cgcgtcatca aatcccggag
      121 actcgcgccg ggtgccgcca aagtgttacc agtatgacgc aaatcatgaa atcgcaaact
      181 aggtgctccg ataccggcta ctactttcgc ccacttcacc agtggattga agttaccccg
      241 tcgcataggg ccaccacgga gcatggtaaa taccagtgcg tcggacgccg gggctacgaa
      301 gtccctcagg tgcgcaatca catctggccg gatcgccgct ggcaccgtta cagttcgtgc
      361 gcccgcccgc gacttgggtg gcgtgcggac gagtccacgc ccgacgagat cgatgaactg
      421 tgagctaatc cgaacccaag tcccatcagg ggcaacatca caccggcgca atgccgtgac
      481 ctcaccccaa cgcagcgagc agaacgccgt gatgaggatc aacgccctgt acttgcggta
      541 gggcatcagc tccgcgagtg cgagcacctg agcgacgctc agcaccgggc gttcttcgga
      601 atgctccttg tccgcgctcc cctgagttga cacgggttgc gcgtgatcag ccgatcctcc
      661 gccgcggccg tcatcaagat cgcacgcagc agccggtatg ccttcgctgt catggtctgc
      721 gacagcccgg tagagagaag cgttgtccgc cactcccgaa cgaccgccgt cgtgatctta
      781 ttcagtggca tctcgccaag atggggtgcg acataattct tcagcaggcg acggtaaagc
      841 tgtgtagtgc tcggtcgcag accaggtcgc tgtgtgaccc actgttctgc gtagtccgct
      901 agcttgaccg cgcctctttt gggatcggcc cagtcatcgt gcatgagctg ggtttcgatc
      961 atgctcagcg tgcgctcggc gtcgcgcttc ttctcaaatg tctgagggat cgatcgcagc
     1021 tgaccatccg gtcctcggta acggacctgc caacgacccg agggaagctg acgaagattg
     1081 ccgaaccggc ggcgtgcctt cttgtcaacc atcacgccac gctccgcagc acacttacaa
     1141 ccacctcggc actgatcggc tctacccggg aggcggccag ccacgcgtcg aggtcggtca
     1201 acgcgaagcg cacgtgccgg ccgacgtggt gaaaggcgat cctccgttct gagatcagcc
     1261 gtcgcacgaa ccgttcggag gtattcaggt aagcggccgt ctcagagaag gtcttgccca
     1321 aatccaaaac ggttcgtgct catctcaccc acaactgaac cagtcggacc atcgccgcga
     1381 acgccaaggt agacccttct ctgtctaggc cgacgctctg cgcgtgtctg gcaccagacg
     1441 gatgggtcat cgaccactga cctgctcgtg gaggccgaca caccggatcc ctacccctgg
     1501 ctgtgacctc gacgagtggc taaccatctc gtctatcaac accaactgga gcatgacatg
     1561 gacgccgccc tcctcaccat cgtgcgctgg gctcagcggt gccggcctca actggcgatg
     1621 tgcctcgcta ctgtggcggg cctcggagtt ggcctcgtcg tggcctacgc gctgcgaccc
     1681 tccagcgatc tcgccatgaa cctgaccgtc ggtgcctgca tggtggcggt ccagttggtc
     1741 atgtacgcct tgttggtctt cagcaaccga gccgtgatgc ccccaccgat ccttgtgttg
     1801 gtcgtcgcat tgaccgtgat agtcaccttg ttactcatct tgtgatgccg tgcgtatcgc
     1861 ttctgaaacg caagcccggt gcagtcaccc cgaaaatgag tccgcccggc tggtgtcagg
     1921 aagtacttca caaggctgtt gccggcgtcc cacgtctgca cggcccagcg cccccaaggc
     1981 gagaccacta tgatcatctc cactcttacc tacccggaac agccgccaat gtccagtacc
     2041 agtccgcacc gaccggaagc gtcagggctg cgcacacggg atgtccagaa ttgatcggta
     2101 ttgtccggta gtcgcttctg gtaatcgcta gctggcaggt tggcgtcctc agctgagccg
     2161 gacaccaagt tcggcggaac caactgccgg cgctcgccgc cccgcacccc ggcaggcgtc
     2221 caggatggct gacacgagcg tcaagctcgg cagcgggcgg gggtgtg
//
LOCUS       DASVXZ010000777         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_536564, whole genome shotgun sequence.
ACCESSION   DASVXZ010000777 DASVXZ010000000
VERSION     DASVXZ010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536564"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VF788_16560"
     CDS             complement(<1..692)
                     /locus_tag="VF788_16560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935758.1"
                     /translation="MTVVFWILKIAATTLGETGGDLLAQTLQVGYLTSTLIFFAMFLV
                     SVVFQLRARRFHPAIFWTVIVTTSTAGTTMSDFMNRTAGLGYTLGALILTTCLGVIFL
                     IWWRSGQTLDVEKIATFKGELLYWIAILFSNTLGTSSGDFLADDAGIGFRNGFLLLAA
                     IMVLLAAAHYLTSLNGTVLFWIAFVLTRPLGATAGDSLSKPLEHGGLNWGTEGTSAAL
                     LGILIVLVIYQIL"
BASE COUNT          380 a          593 c          551 g          371 t
ORIGIN      
        1 aggatctggt agatcaccag cacgatcagg attcctaata gggccgcgga ggtgccctcg
       61 gtgccccagt tcagtccgcc gtgctcgagt ggtttgctca gcgagtcgcc cgcggtggcg
      121 ccgaggggtc gggtgagcac gaaggcgatc cagaacaaca cggtgccgtt gagcgaagtc
      181 agatagtgcg cagccgcgag cagcaccatg atggcggcca gcagcaaaaa gccgttgcgg
      241 aacccgatac cggcatcgtc ggccaggaag tcaccgctgg aggtgcccag ggtgttggag
      301 aacaagatgg cgatccagta caacagctcc cctttgaagg tggcgatctt ctccacgtcc
      361 agggtttgcc cgctgcgcca ccagatcagg aagatgactc cgaggcaggt ggtcaggatc
      421 aacgctccca gggtgtaacc caacccggcg gtgcggttca tgaagtccga catcgtggtc
      481 ccggcggtgc tggtcgtcac gatcaccgtc cagaagatcg ccgggtggaa ccggcgagct
      541 cgcagctgga acaccacgct gaccaggaac atcgcaaaga agatgagcgt gctggtcagg
      601 tatccgactt gcaacgtctg cgcgagcaga tcaccaccgg tctcccccag cgtggtcgcg
      661 gcgattttca agatccagaa caccacagtc acatggggaa gcttccgagt gacatagccg
      721 accgggtgcc gcgcaacctc cggacctgac ccaggcaccg caggcttgga cattattcct
      781 ttatccaacg ttctctatcc aatctttctg cgcctccatg ctgggcggcg ggcataacac
      841 acaccacaac agccccgcgc atgctctgtc tcatgtctgg ccatcagccg gtggagtcgc
      901 catcatgtaa cgctcactct ttattcccgt tttcgcacgg gctcgccagt gaggtcagcc
      961 attgccctca agggatcatt ttgcgcccca ccgaggcaac gcaaaggcct gatcgaatgc
     1021 gtaatccgac tggaacgcac ctccgaatgc agcctctcgc ctgaacgcat caattccccc
     1081 agagagcagg aacaccagac tcacagagaa tcgcatcagt gcaggcggtc ctgcggtgca
     1141 gcgtgggtaa tctcatcgaa ttcttgtacc gtgctcatcg ttcgcggtga aactcgcgta
     1201 agctgttgcg atcctgccag gtttcaatga acggcggatt cagttccgca ctcctcctcc
     1261 tattggccta ctcacaagga aatccaccta atcgtgagat aacagcacac tgatggtcat
     1321 agcggtatac acgttctcct ccagggtgta ctgagcgctc agcgaccggc actctacgga
     1381 gaccgatcgg tgtctcgtcc agatctgaga gtcccgatgg cgccacggcg cccaacggcg
     1441 tgctgctcgc gaccacagac cgggacttcc tccacatgcc gccttgcctg ctccgttcgg
     1501 ccgtgcgctg gcctcaggtg ccgagaatcc ctacccgtgg cggattcagc tggttgggtc
     1561 gtcgtcctgc tgtcgttcgg ctactgggtc accatcccac gctatgtaaa caacggatag
     1621 cagactgtga ccgtggacac gtttgctgac tctcatggtg ttcacatcgt ggtgtcgcca
     1681 gcctcgcgcg catgaccaca gatcccggga gggtcgcggt tgcgccgcga gctcgacaga
     1741 tgctgaacaa ggtccctgaa gtcacgatct acacctcgat cgtgatcatt tatgttccgt
     1801 tcgcagtcgc gttcacctcg atgacgctgc cggagggggc gtgccgggtg gcgtggtcca
     1861 gcgggttgtc ccccgcttgg cgcaaccggt cggga
//
LOCUS       DASVXZ010000778         3042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1299079, whole genome shotgun sequence.
ACCESSION   DASVXZ010000778 DASVXZ010000000
VERSION     DASVXZ010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1299079"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..162
                     /locus_tag="VF788_16565"
     CDS             <1..162
                     /locus_tag="VF788_16565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005465350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase alpha/beta domain-containing
                     protein"
                     /protein_id="HEX8935759.1"
                     /translation="TTDAMVRLVDQAMLSIGRYQRGDLVVIVAGSPPGTVGSTNLIRV
                     HRLGEDDLG"
     gene            242..1165
                     /locus_tag="VF788_16570"
     CDS             242..1165
                     /locus_tag="VF788_16570"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEX8935760.1"
                     /translation="MSVSVASKDVLVAGPWFADLIFRGLSRPILPGAEVFADEFTLLP
                     GGAFTLAMALRRLGHDVVWATDFGDDLFSQHVLSIARAEGLNEIGFRHHPIPLRSLTV
                     VLSYPQDRAMATYQDRIQPPSLATLLKEHHPRTLLLPSLQYGHATHTALCLAHGLGIQ
                     VFMDCQDVPGTLDTPMLRDTLAQVDIFAPNTDEALRLTGTNTVEDALDALADLVDTVI
                     IKRGRAGATAVQHGQRYDVAGIPLAVVDTTGAGDCFNAGFVHAQLAGHDLPDCLAAGV
                     ACGAAAITDLGSSAAPNLVQLQQWLSRVPHQ"
     gene            1367..>3042
                     /locus_tag="VF788_16575"
     CDS             1367..>3042
                     /locus_tag="VF788_16575"
                     /inference="COORDINATES: protein motif:HMM:NF013173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX8935761.1"
                     /translation="MRVLAADLDGTLLGGSATDRWRLLADLARHPEVTVVFATGRGRT
                     AVREVLRDLLVPRPRWIVADIGATVLDGADLSPVESLQTALRAGWPGTGRVRAVLRRF
                     PALRYQDDVAQDGRCSFYLQPDQLTVDITDAVAALGCRWIYSADRYFDVLPHGASKGS
                     ALLALARLQGWSVDSILVAGDSLNDLSLFTLGAHGVIVGNAEPALASAVPAPDAVHRP
                     TQPGAAGVLHALRNLGWVESHYPLVIGYHRPPVSWTPKHGWQKPSSPNGILPTLNRLF
                     TDDLKAVWVTGAILEKQQHARHLSEHGTGIPLSFVPLNPHEWSEYFHRACKEALWPVL
                     MSQPERMHFDSAAWEHYRAVNKRFAYHIGRTAAPKATIWLHDYNLWLVPGMLRTARPD
                     LRIGLFHHTPFPPQEIFAALPTAPEIRTSLGCLDWAGFHTSTFAERFRQALADTPRPP
                     RIGVHPLGIDRKAIEALARTRPRPRRPVTELLVLAIERLDYVKAPLEKVEAIATLLTR
                     HCDLHGNLRFRELPGHLRFRLVCAPPEPGITAYDATKQALERRITEVNQN"
BASE COUNT          530 a         1043 c          880 g          589 t
ORIGIN      
        1 accaccgacg cgatggtccg actggtggac caggcgatgc tgtcgatcgg gcgctaccag
       61 cgcggcgatc tggtcgtgat cgtcgccgga tcaccaccgg gcacagtcgg ctcgactaac
      121 ctcatccggg tgcaccgcct gggcgaggac gacctaggct gatggtggcg gcactgaccg
      181 tctcacgctg gttgggtagg gctgcctatg tcgcaaatgt ggcggtcatt gaaactcggt
      241 cgtgagcgtt tcggtggcga gtaaggacgt gctagttgct ggcccttggt tcgcagatct
      301 gatttttcgg ggactatccc ggccgattct gcctggcgca gaggtttttg ccgacgagtt
      361 caccttgcta cctggcggag cctttacctt ggcgatggcc ctacgccgcc ttggacacga
      421 cgtggtatgg gcgaccgact ttggcgacga tctgtttagc cagcatgtcc tgtccattgc
      481 ccgcgctgag ggcctcaacg agatcggatt ccgtcatcat cccatccccc tgcgcagcct
      541 caccgtggtg ctctcttatc cccaagaccg agctatggcc acctatcagg accgcattca
      601 accaccgtcg ctggcaactc tgctcaaaga gcaccaccca aggacattgc tgctgccctc
      661 tctccagtat ggccacgcca cccataccgc attgtgcctc gcccacgggc tcgggataca
      721 ggtattcatg gactgccagg atgttcctgg cactctcgac acccccatgc tccgagacac
      781 cctcgcgcag gtcgacattt tcgctcccaa caccgacgaa gcgctccggc tcaccggcac
      841 caacacggta gaggatgcct tggatgcgct cgctgacctc gtggacaccg tgataattaa
      901 acgtggccgt gctggcgcca ctgcggtaca gcacgggcag cgctatgacg ttgccggcat
      961 cccgctcgct gttgtcgata ccactggcgc cggtgactgc ttcaacgctg gcttcgttca
     1021 cgcccagctc gcgggacacg atcttcccga ctgccttgct gccggggtcg cctgtggcgc
     1081 cgctgcaatc accgaccttg gctccagcgc agcacccaat ctggtccagc tgcagcagtg
     1141 gctctcccgg gttccgcacc agtaatggag ctgggctgac tgttcactgg ctcggagccc
     1201 catgcatcac tcatgatctc tactcgattt acccgcgggg atccaagacc ttcttaggcg
     1261 tttctccgca tctggtggca gtcgatgtgg aagcctcccg tgatctatga ccgaagccgc
     1321 ggcgccttta cgaaagtcga tccaccgtct gagccagaac cccagtgtga gggtcctggc
     1381 tgctgacctt gatggcacgc tcttgggcgg gagcgcgacg gaccggtggc gactactcgc
     1441 cgacctggct cgccatcccg aggtgacggt cgtcttcgcc acgggtcgcg ggcggacggc
     1501 ggtgcgcgag gtcttgcgtg acctcctggt gccgcggcct cgctggatcg ttgccgacat
     1561 cggagccact gtcctcgatg gtgccgatct gtccccggtc gagtcacttc aaacggcgct
     1621 acgcgctggc tggcctggta ccggccgggt gcgcgccgtg ctacgccgct tcccggcact
     1681 gaggtatcaa gacgacgtag cccaagatgg ccgctgctcg ttctatctcc agccggacca
     1741 gctgaccgtg gacatcaccg atgctgtggc agcgctggga tgcaggtgga tctactcggc
     1801 ggaccgctac ttcgatgtgt tgccgcacgg cgcctccaag ggcagtgccc tgttagccct
     1861 ggccaggctg cagggttggt cggtggactc gatcctggtc gccggtgaca gtctgaatga
     1921 cctgtcgctg ttcacgttgg gcgcgcatgg cgtgatcgtc ggcaacgccg agcctgcttt
     1981 ggcctcagca gtaccagccc cggacgcggt gcacaggccc acccagccgg gcgccgccgg
     2041 cgtgctgcac gcattgcgca acctcggctg ggtggaatcc cactatccgc tcgtgatcgg
     2101 ctaccaccgc ccgccagtga gctggacccc caaacacggc tggcagaaac cctcgagccc
     2161 caacggcatc ctgcccaccc tgaaccgcct attcacggac gacctgaagg cggtctgggt
     2221 gaccggtgcg atccttgaga agcaacaaca cgcccgccac ctcagcgaac acggcactgg
     2281 gattccgctg tccttcgtgc cgctcaatcc tcacgaatgg agcgaatatt ttcaccgggc
     2341 ctgcaaagag gcactgtggc cagtgctcat gtcccaaccc gagcggatgc acttcgactc
     2401 ggccgcatgg gagcactacc gcgcggtcaa caagcgcttc gcctaccaca tcggtcgcac
     2461 ggcagctccg aaggcaacca tctggctaca tgactacaac ctctggctcg taccaggaat
     2521 gctacgcacc gcccgtccag acctaaggat tggtcttttc caccacacgc cctttccacc
     2581 gcaagaaatt ttcgccgcct tgcccactgc ccctgaaatc cgcacctcgc tcggctgcct
     2641 cgactgggca ggattccata cctccacctt cgccgagcgc ttccgccagg ctctggccga
     2701 tacgccaaga ccgccgcgta tcggtgtcca tccgctagga atcgaccgga aagccatcga
     2761 ggcgctggcc cgaacccgcc ctcgtcctag acgtccagta accgagctgt tggtgctggc
     2821 catcgaacgt ctcgactacg tcaaagctcc gctggagaag gtcgaggcca tcgcgacgtt
     2881 gctcacccgc cactgtgatc tacacggaaa cctgcgattc cgagagctac cggggcacct
     2941 gcggttccgg ctcgtttgcg cgccacccga acctggcatt accgcctacg acgcgaccaa
     3001 gcaggcactt gaacggcgca tcacagaggt caaccagaac tg
//
LOCUS       DASVXZ010000779         4462 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_896274, whole genome shotgun sequence.
ACCESSION   DASVXZ010000779 DASVXZ010000000
VERSION     DASVXZ010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4462
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896274"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VF788_16580"
     CDS             <1..969
                     /locus_tag="VF788_16580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEX8935762.1"
                     /translation="GLVWYQKHTQFPGPGRTESNVVGVRILPIFATKAGGFAMTNIGV
                     ICLMAGLFQINPIWNFGPYNPSQVSAASQPDWYVGWLDGSTRLWPAWEIYLGNYMIPA
                     SFWPTMVIPGIMFGLAFAYPGIERKLTKDHASHNLLQRPRDVPVRTGLGMMAISFMFI
                     LLLSGGNDVIAYTFDISLNATTWAGRIGMLLLPPIAYYFTYRICLGLQRADRSILEHG
                     IETGIIKRLPHGEFIEVHQPLGGTDDHGHPIPLEYQGARVPKRMNQLGSAGSPLPGST
                     FRPDPSEQTRALEQARHGSTAGNGDEISTNGSGRRRLAGRPQQPND"
     gene            complement(1265..1666)
                     /locus_tag="VF788_16585"
     CDS             complement(1265..1666)
                     /locus_tag="VF788_16585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 4"
                     /protein_id="HEX8935763.1"
                     /translation="MKVEARIFEILTAFFFISAAIYGLWSHGEAVGSVAITLTGGLTL
                     IVGTYFRFVSRRVRMRPEDDTDAEISDGAGELGFFSPGSYWPFGMALGASVLGYALAF
                     DQWWMVAIGIVLVIGTVSGLVFEYHVGPKPE"
     gene            complement(1717..2679)
                     /gene="coxB"
                     /locus_tag="VF788_16590"
     CDS             complement(1717..2679)
                     /gene="coxB"
                     /locus_tag="VF788_16590"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEX8935764.1"
                     /translation="MGVVRSRIGRLLKVAGLAAMVALVSTGCSVYQAFSFGWPQGVTP
                     QAERMRSLWIWATVAALAVGAVVAGLIMWTVARHRKRSDEMPRQFQYNLPLEIIYTVI
                     PFVIVAVLFYYTVTAQNFVSAKVDNPNLRVRVIGFQWNWEFQYLQDQPGKNGTYQVRR
                     TDDGEPMSTVGSSSTIPLLVVPTDRVVEYRVESTDVLHSFYIPDFLFKRDVFPYPEKN
                     DTDNVFQTTVQRQGAFVGRCAELCGTYHAMMNFEMRALSPDLFDRYLALRAQTNPQTH
                     RAYTAGEALTQLNCGELCAPEAVTTSPFDTDRTAREIRQARGGH"
     gene            2890..>4462
                     /gene="asnB"
                     /locus_tag="VF788_16595"
     CDS             2890..>4462
                     /gene="asnB"
                     /locus_tag="VF788_16595"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEX8935765.1"
                     /translation="MCGLLGLLTAQQDAAQRVAEINAALCCQRHRGPDETGTWHDDDV
                     VLGFNRLSIIDLEHSQQPLCWGPPDAPSRYTILFNGEIYNYLELREQLRGKPYEVNFL
                     TAGDTEVVLAAYHHFGPAAVLRLRGMFAFVIWDAQRRVVFGARDPFGIKPLFSCAGPG
                     GVAFASEKKSLLELAPSLGVSTAIDRRALQHYLTLQYVPEPASLHTGITRIESGTSFT
                     VSPGGTLITERYFRPEFRPQQVRTEAQADALHDEITAALRDSVAKHMRADVTVGAFLS
                     GGIDSTAIAALAREHNPDLITFTTGFEREGYSEVDVAAESAAAIGVRHVIRTVSADEL
                     ADALPLIVWYLDDPVADPALVPLWFIARQAREYVKVVLSGEGADELFGGYTIYREPLS
                     LAAFEKVPGGLRRTLGRISTRIPEGVRGKDLLRRGALTLEQRYYGNARIFRDDQLREV
                     LRGYDPAVSHVDVTADPYIASAGWDPVARMQHVDLFTWLRGDILVKADKMTMANSLEL
                     RVPFLDPEVFRVASAI"
BASE COUNT          836 a         1469 c         1366 g          791 t
ORIGIN      
        1 gggttggtct ggtaccagaa gcacacccag ttccccggac cgggacggac cgagagcaat
       61 gtggtcgggg tccgtatctt gccgatcttc gcaaccaagg ccggcggctt tgccatgacg
      121 aatatcggtg tgatttgcct catggcgggg ttgttccaga tcaacccgat ctggaacttc
      181 gggccctaca acccctccca ggtctcggct gcctcgcagc ccgactggta cgtgggctgg
      241 ctcgatggct cgacccggct gtggcccgcc tgggagatct acctgggcaa ctacatgatc
      301 ccggcatcgt tctggccgac gatggtgatt cccggcatca tgttcggctt ggcattcgcc
      361 tacccgggga tcgagcgcaa gctgaccaag gaccacgcct cccacaacct gctccagcgg
      421 ccccgagacg tcccggtgcg aaccggcttg ggcatgatgg cgatctcgtt catgttcatc
      481 ctgctgctct ctggcggcaa tgatgtcatc gcctacacgt tcgacatctc gctgaacgcc
      541 accacctggg cgggtcgcat cggcatgctc ttgctgccac cgatcgccta ctacttcacc
      601 taccggatct gcctcggcct gcagcgcgct gaccggtcga ttctcgagca cggaatcgag
      661 acgggcatca tcaagcggct gccccatggt gagttcatcg aggttcacca gccccttggt
      721 ggtaccgacg accacggcca ccccatcccc ctggagtacc agggcgcgcg agtgcccaag
      781 cggatgaatc agctgggttc agcgggatcc ccactgccag ggtcgacatt ccgaccggat
      841 ccttctgaac agaccagggc gctcgaacag gcccgccacg gatccaccgc aggaaatggt
      901 gacgagatca gcaccaacgg ctcgggtcgg agaagactgg caggtcggcc gcaacagccg
      961 aacgactaac caacccgtcg agtgtcgcgg agcgaggatg cggaggccgt ggccgcagga
     1021 gcgctgaagt ggcttcttcg gcgacgaggt tgaccccagc ctctaccacg ggcgccggaa
     1081 tcgtgcttgc gctgccggag gcccaacagc actttcgcgc cgacccttcc cccacggata
     1141 catcccggct tctcggataa caacggccgc tgctgcggac agcaggcgtg ctggcgctgg
     1201 cctgcgattg gtacctcttc ggtcaccacc gatacacgac ggtacgtcga cggtaggtgg
     1261 cggctcactc aggcttcgga ccgacgtggt attcgaagac cagccctgac actgtgccga
     1321 tcaccagcac gatgccgatc gcaaccatcc accattggtc gaacgcgagc gcgtagccca
     1381 gcacgctagc cccgagcgcc atcccgaacg gccagtaact gcccggcgag aagaaaccga
     1441 gttcgccggc accatcagag atctcagcgt cggtgtcgtc ctcaggacgc atccggactc
     1501 ggcgggagac gaaccggaag taggtgccga caatgagcgt cagcccacca gtcaaagtga
     1561 tcgctaccga cccgactgcc tcaccatgcg accacagtcc atagatcgcc gcggagatga
     1621 agaagaacgc ggtaaggatc tcgaagatcc gcgcctcgac cttcatggtg ctgcctcact
     1681 ctcgagcctg ccaaacgacc gtctcatact gaaaggctag tggcctcccc gtgcctggcg
     1741 gatttcgcgg gccgtccggt ctgtgtcgaa cggtgacgtg gtcaccgcct cgggagcgca
     1801 cagctcgccg cagttgagct gggtcaacgc ctcaccggcg gtgtacgcgc gatgggtctg
     1861 cgggttggtc tgagcccgca acgccagata acggtcgaac agatcaggcg acaatgctct
     1921 catctcgaag ttcatcatag cgtgataagt accgcacaac tctgcgcagc gaccgacgaa
     1981 cgctccctgg cgctgtaccg tggtctggaa cacgttgtcg gtatcgtttt tctccgggta
     2041 cgggaaaacg tctcgcttga acagaaagtc agggatgtaa aacgagtgca agacgtccgt
     2101 ggactcgacg cgatactcga ccacccgatc agtcggcacc accagcagcg ggatcgtgga
     2161 ggacgagccg acagtggaca taggttctcc gtcgtcagtt cgtcgtacct ggtaggtacc
     2221 gttctttccg ggttgatcct gtaggtactg gaactcccag ttccactgga aaccgatcac
     2281 ccgtactcgc aggttgggat tatccacctt cgcgctgaca aagttctgcg cggttacggt
     2341 gtagtagaaa agcacggcga caataacgaa cgggataacc gtgtagatga tctccagcgg
     2401 caggttgtac tggaactgcc ggggcatctc gtcggaccgt ttgcggtgac gggcgactgt
     2461 ccacatgatc agccccgcga cgaccgcccc gacggccagc gcagctaccg tcgcccagat
     2521 ccacagcgac cgcatccgct cagcctgcgg agtaaccccc tgcggccagc cgaacgagaa
     2581 cgcctgatat accgagcatc ccgtggagac caacgcgacc atggcagcta acccggctac
     2641 cttcagcagc cgcccgatac gagaacggac cacgccgatc acgcctgttc ctcctcgttg
     2701 acccgacgcg ctcgttcgcc gaagcggcca gccaccccac cgacgctgag cctaacccag
     2761 cgcgacaagc aaagcttcgc cggggcgcga gtagctcggt atgcctgggg ccatactgag
     2821 ccgccagggg ttggcttgaa tgtcagtggt cttagcggcg ggtcggccgc atgatgggag
     2881 ggcaagcggg tgtgcgggtt gctgggacta ctgaccgcgc agcaggacgc ggcgcagcgc
     2941 gtggccgaga tcaacgcagc gctttgctgc cagcggcatc gcgggcctga cgagaccggg
     3001 acatggcacg acgatgacgt agtgctcggc ttcaaccggc tgtccatcat cgatctcgag
     3061 cattcccagc aaccgctgtg ctggggtccg cccgacgctc cgagtcgtta caccatcctg
     3121 ttcaacggag agatttacaa ctacctcgag ctccgcgaac aactgcgcgg caaaccgtat
     3181 gaagtgaact tcctcacagc gggcgatacc gaggtggttc tcgcggccta ccaccatttc
     3241 gggcccgctg ccgtgctgcg acttcggggg atgttcgcgt tcgtcatctg ggacgcgcag
     3301 cggcgggtcg tcttcggcgc ccgcgaccct ttcggcatca agccgctgtt cagctgcgcc
     3361 ggtccgggcg gggtggcctt tgccagcgag aagaagagcc tgcttgagct ggcgccgtca
     3421 ctgggagtgt cgacggcgat cgaccggcga gcgctgcagc actacctgac cttgcagtac
     3481 gtgcccgagc cggcgtcact gcacaccggc atcactcgca tcgagtcggg cacgtcgttc
     3541 acagtgtccc ccgggggcac gctgatcacc gagcgatact ttcgtcccga gtttcgacct
     3601 cagcaggtcc gcaccgaagc gcaggcggat gcgctacacg acgagatcac tgcggcgctg
     3661 cgtgactcgg tcgccaagca catgcgggct gacgtcaccg tcggcgcttt cctgtccggc
     3721 ggaatcgact ccacggccat cgccgcgctg gcccgcgaac acaatccaga tctgatcact
     3781 ttcaccacgg gtttcgagcg ggagggctac tccgaggtag atgtggccgc ggagtcggcc
     3841 gctgcgatcg gcgtccggca cgtcatccgc accgtctcgg ccgacgagct ggccgacgca
     3901 ctaccgctga tcgtgtggta cctcgatgac ccggtggccg accccgcact ggtgccgctg
     3961 tggttcatcg cccggcaggc tcgcgaatac gtcaaagtgg tgctgtccgg ggaaggtgct
     4021 gatgagctct tcggcggcta caccatctac cgggaaccgc tgtcgctagc tgcgttcgaa
     4081 aaagtgcccg gcggactgcg ccgcacactg ggccggatct ccacccgaat cccggaaggt
     4141 gtgcgtggca aggacctgtt acgtcgcggc gcactgactc tggagcagcg ctactacgga
     4201 aacgcgcgga tcttccggga cgatcagctc cgcgaggtgc tgcgtggata tgacccggcc
     4261 gtctcgcatg ttgacgtcac cgcagatccc tacatcgctt ccgccggctg ggacccggtc
     4321 gcccgcatgc agcacgtgga cctgttcacc tggttgcgcg gcgacatcct ggtcaaggcc
     4381 gacaagatga ccatggccaa ctcactggag ctgcgagtgc ccttcctgga tcccgaggtg
     4441 ttccgggtag cgtccgccat cc
//
LOCUS       DASVXZ010000780         7589 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_178869, whole genome shotgun sequence.
ACCESSION   DASVXZ010000780 DASVXZ010000000
VERSION     DASVXZ010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7589
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178869"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..771
                     /locus_tag="VF788_16600"
     CDS             <1..771
                     /locus_tag="VF788_16600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class E sortase"
                     /protein_id="HEX8935766.1"
                     /translation="RRRPDPVRTAIRGVGELLLTVGLVVLLFVFYEAYVTDWTSANKQ
                     RQATAKLDDTWQNGRGLVDRVTKGAGIAKIYVPAFGPDFVFTVLEGTDPDTLASGPGH
                     YQGTASPGALGNFAVAGHRVGKGSPFNSLDLLTSCNAIVIETVDHWYVYRVLPLQGET
                     TGWTAGKGTQPQCKGVDPLPARYANVVGKTIVLPSQVEVIAPVPGQPGRTPVNRLITL
                     TTCHPQFSASQRLIIHGIMVASYRKVDGQRPVELTAGA"
     gene            969..1613
                     /locus_tag="VF788_16605"
     CDS             969..1613
                     /locus_tag="VF788_16605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005460751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEX8935767.1"
                     /translation="MRILVVDNYDSFVYNLVQYLAQLGAECVVRRNDALQPGDLATAD
                     AVLISPGPGTPERAGASMSVVRDCAEQGRPLLGVCLGHQAIGAVWGATVARAPELLHG
                     KTSEVHHNGDAVLAGLPEPFIATRYHSLTVLPETIPDDLLVTGSTESGIVMALRHREL
                     PVHGVQFHPESVLTDGGHRLLANWLRLAGGEVDEFRVLELEAGMRKLASAALVR"
     gene            complement(1641..3590)
                     /gene="pknB"
                     /locus_tag="VF788_16610"
     CDS             complement(1641..3590)
                     /gene="pknB"
                     /locus_tag="VF788_16610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009151906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEX8935768.1"
                     /translation="MTIPRLLSDRYELGETLGYGGMSEVHRGRDVRLGRDVAVKVLRA
                     DLARDPQFQHRFRREAQNAAALNHPAIVAVYDTGETVSDYGPLPYIVMEFVEGRTLRD
                     IVKTEGPMDEPRAMETMADICAALDFSHRNGIIHRDVKPANVMINNAGAVKVMDFGIA
                     RALADGQGVTQTAAVVGTAQYLSPEQARGELVDARSDVYAAGCVLYELITGEPPFTGD
                     SPVAVAYQHVREDPTPPSHQNPDVSAALDAVVLKAMSKNPANRYQSAAEMRTDLIRVL
                     NGQRQLAPVVMTDADRDLMLDSGPTVAIRPTRASRRRPEPVGAPVEARRAGRGLGILT
                     TVVVLAILGLVLLLFTDLFGGGPKPIPLLNVVGQPVPLAEQALNAAGFPTERSPVEST
                     PADLDRVVRMTPPAGMAVRGTTIRLDVGAGPAEVEVPNLLGLDRGQAQSSLQGIGLVL
                     SPDQRQQVVQDDKDVGHVQLQDPPAGRRLAKGKSVVITIGVPPETVGVPDVVGTNIEQ
                     AQRNIVVAHLTAQIQEIDSPVQKGQVLKQNPAGGASVKVGSTVTLMVSRGNQLQMPNL
                     RGQTPTQAQATLQRLGWTGSFKEVLTPVDDANQVGLIVKQDVPPGTGFAVDQIITITI
                     GRDNTTTSTTTSSPIFESPGFGPGG"
     gene            complement(3719..5116)
                     /locus_tag="VF788_16615"
     CDS             complement(3719..5116)
                     /locus_tag="VF788_16615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEX8935769.1"
                     /translation="MGLSTGQVLARRYRLGRRIAIGGMGEVWQADDTRLERQVAVKVL
                     KPELSGDPEFRYRFHAEARMTASLNHPGIAAVHDYGEAAEFPGHRDPDVAYLVMELVA
                     GEPLATILMRSRRLSADRTLDILEQAGNALQAAHERGLVHRDIKPANILITPDGRVKL
                     TDFGIARAVDSAPMTRNGMVMGTAHYIAPEQAAGNETGPAGDVYSLAVVGYECLAGQR
                     PFSAENAVGVAMMHIRDRPPPLPSDVPREARMLIEAALVKEPRERYGTGGEFAAAVAA
                     VRSGQELPAVTHSTRPSPTAVLPSPPQTPMSLRHRQGLGAGRVAVAVLGALTLLLGGY
                     LVRDAFHSTAGTPSGVASGTPNTGVASTPGPAATPPSFQLDPTKAQPAPELSNRDDTP
                     SEVLIIPTDYFGHRGSDAVVTAKVRGLIPRVVDDDGEQVDPDLRSQCRIIGVDPLAGY
                     VPRGSTLELTCRRGK"
     gene            complement(5145..6620)
                     /locus_tag="VF788_16620"
     CDS             complement(5145..6620)
                     /locus_tag="VF788_16620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEX8935770.1"
                     /translation="MNTPLRRVAMAVIAMIVLLLANATYIQVVSAEDYRTDPRNRRVL
                     LDEYSRQRGQIIAGGLPVANSAETGGQLRFLRTYLNGPLYAPITGYYSLRYGSGGMEN
                     SMDSVLNGSDGRLFVRRVSDLITGREPSGGSVELTINPVVQRAAYDALTRRGYTGAVV
                     AIKPSTGEILAMASTPSYDPNRLSAHDGAEQEAAWNEATSPKRGSPLTNRAVAAAYPP
                     GSTFKLVVTAAALESGRATPDNPLTAAAALQLQGTTTLLHNFADQSCGGGTTATLTQA
                     VVRSCNTAFAQLASMVGENTLRKQAQLFGIGQQDLTIPIPVAPSTMGAIPDVAALEQS
                     GIGQRDVALTPLQNAMIVATIANGGARMKPQLVRNILAPDLSVLDRFGPEQVETAMSR
                     STASQIRAMMVAAENSYRNEGKINGVTIAAKTGTAEHGADPKNTPPHGWYVAFAPADN
                     PQVAIAVVVEDGGDRNLEATGGSLAAPIGRAVIGAALQGAR"
     gene            complement(6617..>7589)
                     /locus_tag="VF788_16625"
     CDS             complement(6617..>7589)
                     /locus_tag="VF788_16625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEX8935771.1"
                     /translation="TGLAGLVLLALPGLLPAAISEVNGSKIWLRLGGFTIQPGEFAKI
                     LLMIFFAAFLVTKRDLFTTAGRKVLGMELPRGRDLAPLLVAWGLSLGVLVLEKDLGTS
                     LLFFGIVLVLIYVATERVAWLVIGLIFFMGGAFVSDLLFAHVQRRVTAWINPFSDYDG
                     AGYQMAQSLFGLGTGGVFGTGLGAGRPDLVPEAHTDFITAAIGEELGFVGLAAVLFTY
                     LLVVMRGMRAGLTVRDTFGKLLAAGLSFAIGLEVFIVVGGVTKLIPLTGLTAPFLAYG
                     GSSLLANYILVALLLRISHAARAPAGSAPRRPVTPLAEAHTEMVQRP"
BASE COUNT         1252 a         2507 c         2536 g         1294 t
ORIGIN      
        1 cgtcgacgcc cagacccggt gcgaacggcg atccgcgggg tgggcgagtt gctcctgacg
       61 gtggggctgg tggtactgct gttcgtgttc tacgaggcat acgtcaccga ttggacgtca
      121 gccaacaagc aacgccaggc caccgccaag ctggatgaca cctggcaaaa cggccgcggc
      181 ctggtggatc gagtgaccaa gggcgcgggc atcgccaaga tctacgtgcc ggcattcgga
      241 cctgatttcg tcttcaccgt gttagagggc actgatccag acacgctggc atcgggtcca
      301 ggccactacc agggcaccgc atcgcccgga gcgctgggca atttcgccgt ggccgggcat
      361 cgcgtcggca agggttcacc cttcaactcc ctcgacctgc tgacctcctg caatgccatc
      421 gtgatcgaga cggtcgacca ctggtacgtc taccgggtcc tgccattgca gggtgagacc
      481 accggctgga cggcggggaa gggaacccag ccacaatgca agggcgtcga tccgctgccc
      541 gctcggtacg ccaacgtggt gggaaagacg atcgtgctgc cttcacaggt cgaggtgatc
      601 gcaccggtgc cgggacagcc aggtcggact cccgtcaatc gactgatcac cctcacgacc
      661 tgtcacccgc aattctccgc cagtcagcga ctgatcattc atggcatcat ggtcgcttcc
      721 taccggaagg tcgacggtca acgtcccgtt gagctgaccg cgggggcctg aggagcctca
      781 tgtacagctg gatatggcga cacctgcccg ggccaaccgc ggtgaggctt ttgcaagcgc
      841 tgcttctggt cgcagcggtg atagcactgc tgctgctcgt agtgtttccg tgggccgagc
      901 cccggctgcc gttcaactcc gtgacgaccg gctaagcgag cagccctgag ccagttaccc
      961 tggccggcgt gcgcatcctc gtagtcgata actatgacag ctttgtctac aacctcgtgc
     1021 agtacctggc gcagctgggc gccgagtgcg ttgtgcgccg caacgacgca ctccagcccg
     1081 gtgacctcgc caccgcagac gcggtgctga tcagtcccgg gccgggcact ccggagcgtg
     1141 ctggcgccag catgagcgtc gtccgggact gtgccgagca gggccgcccg ttgctcggag
     1201 tctgcctcgg tcaccaggcg atcggggcgg tgtggggagc gaccgtggcg cgggcgccgg
     1261 agctgctgca cggcaagaca tctgaggtac accacaatgg cgacgcggtg ctcgccgggt
     1321 tgccggagcc gttcatcgcc acccggtatc actcgctcac cgtgctgccc gaaaccatcc
     1381 ccgacgatct cctggttacc ggaagtaccg aatcgggaat cgtgatggcg ctgcggcatc
     1441 gcgagctccc agtgcatggg gtgcagttcc acccggagtc ggtactgact gacggcggcc
     1501 atcggttgct ggcgaactgg ctgcgcctcg ctggcgggga agtggacgag ttccgggtac
     1561 tcgagctcga ggccggcatg cgcaagctcg cctccgccgc gctggttcgc tgactcctct
     1621 gtcagctacc ggccgccacc tcagccacct gggccgaatc cgggtgattc gaagatcggg
     1681 ctgctggtcg tcgtgctggt cgtggtgttg tcccggccga tggtgatcgt gatgatctga
     1741 tcgaccgcga agccggtgcc gggcggcacg tcctgcttca cgatgaggcc aacctgattg
     1801 gcgtcatcca ccggggtgag gacttctttg aagctgccgg tccaacccag tctttgcagc
     1861 gtggcctgcg cttgggtcgg ggtttgaccc cgcagattgg gcatctgaag ctggttgccc
     1921 cgggagacca tgagggtcac cgtgctgcct accttgacgc tggcgcctcc agccgggttc
     1981 tgcttgagaa cctgaccctt ttgcaccgga gagtcgatct cctggatctg cgcagtcagg
     2041 tgggccacca caatattgcg ctgggcctgc tcgatattgg tgcccaccac atcgggcacc
     2101 cccacggtct ctggtggcac gccgatggtg atgactaccg acttgccttt ggccaggcgg
     2161 cgcccggcgg gcggatcctg gagttgtaca tggccgacat ccttgtcgtc ctgaacgact
     2221 tgctggcgct ggtccggaga gagcaccagg cctatccctt gcagggaact ttgggcctgc
     2281 ccgcgatcca aaccgagcag attgggcacc tccacctcgg cgggcccggc gccgacgtcc
     2341 aaccggatcg tcgttccgcg gaccgccatt ccagcggggg gcgtcatcct caccacccgg
     2401 tcgaggtctg ccggggttga ctcgacggga ctacgttccg tcgggaaacc cgcggcattg
     2461 agtgcctgct cggctagcgg caccggctgg ccgaccacgt tgagcagcgg gatcggtttc
     2521 ggcccacccc cgaacaggtc ggtgaacaac agcaggacca ggccgaggat ggcaagtacc
     2581 accaccgtgg tgaggatccc gagtccgcgc ccggccctgc gcgcctcgac cggcgcaccg
     2641 acgggctccg ggcgccgccg gctggcccgg gtggggcgga tcgccaccgt ggggccagag
     2701 tcgagcatga ggtcgcggtc cgcgtcggtc atgaccaccg gggcgagctg gcgctgcccg
     2761 ttcaggacgc ggatcaggtc cgtgcgcatc tcggcggcgg actggtagcg gttcgccgga
     2821 ttcttgctca tcgccttgag caccaccgca tccagtgccg ccgacacgtc aggattctgg
     2881 tgcgacggtg gtgtggggtc ctcgcgcacg tgctggtagg ccaccgcgac tggggagtcg
     2941 ccggtgaacg ggggctctcc ggtgatcagc tcgtaaagca cgcacccggc ggcatagacg
     3001 tccgatcgcg cgtccaccag ttccccccga gcctgctcgg gggagagata ctgggcggtg
     3061 ccgacgaccg cggccgtctg ggtgacgccc tgcccgtcgg ccagcgctcg ggcgatgccg
     3121 aaatccatca ccttgaccgc gccagcgttg ttgatcatca cattggccgg tttgacgtcc
     3181 cgatggatga tgccgttgcg atggctgaag tccagggccg cacagatgtc cgccatcgtc
     3241 tccatggcgc gcggttcgtc catcgggcct tcggtcttga cgatgtcgcg cagcgtccga
     3301 ccttcgacga attccatcac gatgtagggc agcggaccgt agtccgacac cgtctcgccg
     3361 gtgtcgtaga ccgcgacgat cgccggatgg ttcagcgcgg cggcattctg cgcctcgcgg
     3421 cggaagcggt gctggaactg gggatcgcgg gccaggtcgg cacggagcac cttgacggcc
     3481 acgtcgcggc cgagccggac gtcgcggccg cggtgcacct cggacatacc gccatagccg
     3541 agcgtctcgc ccaactcgta gcgatccgac agtagccggg gaatggtcat tcctgcgccg
     3601 tcccgctcct tgctcgtgag ccgcgctgtg gccgtgtcca ccaccgggcc cgtgttcggg
     3661 cccggtccgg gccctatcat gccccccgtc tgactgtcac ccgataggtg tcgcccactc
     3721 actttcccct ccggcaggta agttccagcg tcgatccgcg gggaacgtag cctgccagcg
     3781 ggtcgactcc gatgatccgg cactgggagc gcaggtcagg gtcgacctgc tcaccatcgt
     3841 cgtcgaccac gcgcggtatc agaccacgga ccttcgcggt gacgacggcg tcgctgcccc
     3901 ggtggccgaa atagtcggtc ggaatgatga gtacctccga gggcgtgtcg tcccggttag
     3961 acagctccgg ggcaggttgt gccttagtgg gatccagctg gaatgacggt ggcgtcgcgg
     4021 ccggcccggg tgtgctggca acgccggtat tcggtgtccc ggaggccact ccggaaggcg
     4081 tccctgccgt cgaatggaat gcatcgcgga ccaggtatcc gccgagaagc agggtaagag
     4141 cgcccagcac agcgacggcg acccgccctg caccgagccc ttggcggtgg cgcagcgaca
     4201 tcggggtctg cggagggctc ggcagaaccg cagtcggtga cgggcgggta ctatgtgtta
     4261 ctgctggtaa ttcctgtccg cttcggaccg cggcgaccgc agcggcgaat tcaccaccgg
     4321 tgccgtatcg ctcgcgtggc tctttgacca gggccgcctc gatcagcatc ctcgcttcgc
     4381 gaggaacatc cgaaggcagc ggcgggggcc ggtcacggat gtgcatcatg gcgacgccga
     4441 cagcgttctc agctgagaat ggccgctgcc cggccaggca ctcgtaaccc accaccgcta
     4501 gtgagtaaac gtcaccggcc ggaccggttt cgttgccggc ggcctgctcc ggggcgatgt
     4561 agtgtgcagt gcccatgacc atcccgttgc gggtcatcgg cgctgagtcg acggctctgg
     4621 cgatgccgaa gtcggtgagc ttcaccctcc cgtcgggggt gatcaggatg ttggcgggct
     4681 tgatgtcacg gtgcaccaag ccgcgctcgt gcgccgcctg cagcgcattg ccggcctgct
     4741 ccagaatgtc caacgtccgg tccgcactca gccgccgaga ccgcatcagt atcgtggcca
     4801 gcggctcccc ggcgaccagc tccatcacca ggtaagcgac atccgggtcg cggtgtcctg
     4861 gaaattccgc agcttcgcca tagtcgtgga ccgctgcaat tccaggatgg ttcagcgatg
     4921 cggtcattcg ggcctcggcg tggaaccggt agcggaactc gggatcaccg gacagctccg
     4981 gcttgagcac cttgacggcc acctggcgtt ccagccgggt gtcgtcggcc tgccacacct
     5041 cgcccatccc accgatggcg atgcgccggc ccagccggta gcgccgcgcc agcacctgcc
     5101 ccgtgctcaa ccccataccg ccaccacatc acaaagacgc ggcatcagcg ggctccctgg
     5161 agtgcggcgc cgatgacggc tcggccgatg ggggcggcta gggagccgcc ggttgcctcg
     5221 aggttccgat ctccgccgtc ttctactacc actgcgatcg ctacctgcgg gttgtcggca
     5281 ggcgcgaagg ccacatacca gccgtgcggc ggggtgttct tggggtcggc accgtgctcg
     5341 gcggtgccgg tcttcgcggc gatagtgacc ccgttgatct taccttcatt gcggtagctg
     5401 ttctcggctg caaccatcat cgcgcgaatc tgcgaggcgg tggagcgcga catcgccgtc
     5461 tcgacctgct ccggcccgaa tctgtccagc accgacaggt ccggggccag gatgttgcgc
     5521 accaactggg gtttcatccg ggccccgccg ttggcgatgg tggcgacgat catcgcgttc
     5581 tgcaaggggg tgagcgccac atcacgctga ccgatgccgg actgttccag ggcggcgacg
     5641 tcaggaatgg cgcccatcgt cgagggcgcc accgggatgg gaatggtgag gtcctgctgc
     5701 ccgatgccga acagctgggc ctgcttgcgc agggtgttct cgccgaccat ggaggccagc
     5761 tgggcgaagg cggtattgca ggagcgaacc acggcctggg tcaacgtggc cgtggtgcca
     5821 ccaccacatg attggtcggc gaagttgtgc agcaaggtcg tcgtgccttg cagttgcaat
     5881 gcggccgccg cggtaagcgg attgtccggg gtggcccgtc cggactccag cgcggctgcg
     5941 gtgaccacca gcttgaaagt cgacccgggc gggtaggcgg cggcgaccgc acggttggtc
     6001 agcgggctac ctcgcttggg cgaggtggcc tcgttccagg cggcttcctg ctccgcgccg
     6061 tcgtgcgcgg acaggcggtt ggggtcgtag gagggggtgg aggccatcgc gaggatctca
     6121 ccggtgctgg gtttgatcgc cactaccgca ccggtgtagc cgcggcgggt cagcgcgtcg
     6181 tatgcggccc gctggacgac cgggttgatg gtgagctcga cgctgcctcc gctgggctcc
     6241 cgtcccgtga tcagatcaga gactcgccgt acgaacagcc ggccgtcaga gccgttgagc
     6301 acggagtcca tcgagttctc catgccacct gagccatagc gcagtgagta gtagccggtg
     6361 atcggggcgt acagcgggcc gttgaggtag gtgcgcagga aacgcagctg cccaccggtc
     6421 tccgccgagt tggccaccgg caacccgccc gcgatgatct gtccgcgctg gcggctgtac
     6481 tcgtcgagca gcacccgccg gttgcgtgga tcggtgcggt agtcctcggc gctgaccacc
     6541 tgaatgtagg tggcattcgc cagcaacaga acgatcatgg cgatgacagc catcgcgacc
     6601 cggcgaagcg gtgtgttcac gggcgctgca ccatctcggt atgcgcctcc gccagcgggg
     6661 tcaccggcct gcggggggcg gagccggccg gcgctcgcgc cgcatgagag atccgcagca
     6721 gcagcgccac cagaatgtaa ttggccagca gcgaagatcc accgtaggcc aggaacggcg
     6781 cggtgagccc ggtcagcggg atcaacttcg tcaccccacc aaccacgatg aacacttcca
     6841 gaccgatcgc gaaggacagc cccgcggcga ggagcttgcc gaaggtgtcc cggacggtga
     6901 gtccggcgcg cattccccgc atgaccacca acaggtaggt gaacaacact gcagccaatc
     6961 cgacaaaacc cagctcttcg ccgatcgcgg ccgtgatgaa gtcggtgtgc gcttctggca
     7021 ccagatcagg acgtccggca cccagcccag taccgaaaac accaccggta cccagcccga
     7081 acagtgactg cgccatctgg taaccggcgc cgtcatagtc ggagaacggg ttgatccagg
     7141 cggttacccg gcgctgcacg tgcgcgaaca acaggtcgga gacgaacgcg ccacccatga
     7201 agaagatcaa cccgatcacc agccacgcga cccgctcggt ggcgacgtag atgagcacca
     7261 gcacgatgcc gaagaacagc aacgacgtgc ccagatcctt ttccagcacc agcacgccca
     7321 gcgaaagccc ccaggccacc agcagcggcg cgagatctcg gccccggggc aactccatgc
     7381 ccagcacctt tcgccccgcc gtggtgaaca ggtcccgttt ggtcaccagg aaggccgcga
     7441 agaagatcat caacaggatc ttggcgaact caccgggttg gatggtgaat ccacccaatc
     7501 gcagccagat cttcgaaccg ttgacctcag agatagcggc gggaagcagg ccgggcaggg
     7561 ccagcaggac cagtccggcc agccccgtg
//
LOCUS       DASVXZ010000781         3982 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_536887, whole genome shotgun sequence.
ACCESSION   DASVXZ010000781 DASVXZ010000000
VERSION     DASVXZ010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536887"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /locus_tag="VF788_16630"
     CDS             complement(<1..432)
                     /locus_tag="VF788_16630"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935772.1"
                     /translation="MDIDSQSIGARARAIRRRRGLSLEVAAGLAGITKSYLSMLERGQ
                     RRLERRGLLEDLAAALGCSVVDLTGQPYLPADRPSADALVALPGIREAIYDTTLQDAP
                     QIAVRPVEQLAAAIRRANEHRDAGHYGVAGRELGSVLVELHV"
     gene            complement(922..1977)
                     /gene="ltrA"
                     /locus_tag="VF788_16635"
                     /pseudo
     CDS             complement(922..1977)
                     /gene="ltrA"
                     /locus_tag="VF788_16635"
                     /inference="COORDINATES: protein motif:HMM:TIGR04416.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            complement(2224..3879)
                     /locus_tag="VF788_16640"
     CDS             complement(2224..3879)
                     /locus_tag="VF788_16640"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8935773.1"
                     /translation="MREAETVLGVLRERGRRGLPVERLYRLLFNPRLYLLAYQRLYAN
                     AGAMTAGVTGETVDGMSLDKIRCIVAVVRAEQWRWTPVKRIHIPKRDGKRRALGLPSF
                     SDKLLAEVIRMLLNAYYDVQFSDRSHGFRPGRGCHTALGEVVDVWNGTHWFIEGDIAQ
                     CFDSLDHQVMLETMGEKILDNRFLRLIDGMLKAGYLEDWRWNATLSGVPQGGIASPIM
                     SNIYLDRLDKFVETQLIPHYHRGQRRRENPDYEQMSRAIRKARRRGDREAVRALRRQR
                     RLVPSKDLHDPGYRRLRYCRYADDILLGFSGPKSEAVQIKQQLGQFLQDKLKLKLSES
                     KTLITHAHTGRARFLGYDIVTWHCDDKLDSRGRRTTNANIGLLVPRDVVARKCALYMR
                     RGKSWHRPQMLSDHDYSIVSQYQAEYRGIVQYYLLASNVYHLGKLHWVMQTSLLKTLA
                     GKHRSSVAKMARKYKTTIDTPHGPRTALQYVVERGGGRKPLVARFGGIPLKRQKKTTI
                     VDRSPNLFTTSGNELIGRLLAGRCELCGSTTRWRSTTSANLPT"
BASE COUNT          775 a         1318 c         1125 g          764 t
ORIGIN      
        1 cacatgcagc tcgacaagca cagaacccag ctcgcgacct gcgacaccgt aatggcctgc
       61 atcacgatgc tcgttggctc gacggatcgc tgccgctaat tgctccaccg ggcggaccgc
      121 gatctgtggc gcatcctgca acgtcgtgtc atagatggcc tcacggatgc ccggtaacgc
      181 caccaacgca tccgcagacg gccgatcagc tggtaggtac ggctgcccgg tcaagtcgac
      241 cacagagcaa cccagcgccg cagcgagatc ttcgagcaac ccacgccgct ctaaacggcg
      301 ctgcccgcgt tccagcattg acaggtagct cttggtgatt ccggccagcc cagcggcaac
      361 ctccaggctc agccctcgac gtcgacgaat cgcgcgagca cgcgcaccaa tcgattgcga
      421 gtcaatatcc acaagatcct ctcctcacca gcaccccacc aacgccccag cgccgtcacc
      481 ccgacagcag acgagacctc agtgaggacg taactccagg ctactgacgt ccgactcagc
      541 tgcccggttc aggagatcac cccggcgata ttcctccaac atccgcccga acccaaccac
      601 cacgtaaagg gatgaccaca cagcgttaga aatctgcacc gcccaacatc aacatccagc
      661 atccaccagc gccgcgagct tggtggcccg tccaccccca accacacgag aagcaacctc
      721 gcgtggccct ccgcacctca cctcggaccg aaaacgatca gctcaaccct gtgatcactc
      781 tgcgcggtaa agtagcactg cgttacaccg cgttacaccg cgtgtgttgc cgaattgtcc
      841 tctatgggaa tcgagtaggg ggcggggtcg ccccgccccc tctcacacca ccggacatgc
      901 gggcccgcat ccggcggttc gtcaagccgt ttggtagaga cgctgccagg tttggctgag
      961 ggtcttgagg ccgagacggt cccagtaggt gttgggcaga gccacgtgga ggattccaga
     1021 gcctgcgatt cgccagtatc ccttgccgct gccgccccat tgtcgggcgt tgcgctcgga
     1081 gataccgcgt atccgcaggt tgtgccgcct ggcggcggcg gtcttccagt gtttccagtg
     1141 gatttgccgc aggcggcggc gtagccatcc atccagatcg cgaaacgggc ttgccacgtc
     1201 cgcgagccgg aaataggcca tccagccggt ggtgaaccgg ttgatcgcgc cgatgcgata
     1261 gtccatcgac accccccagt tacgccgggt caagacccgc agctgatgtt tcagccgcgt
     1321 gatcgccttg ggggcgaggc ggatcctgac ctgcccgtcg tggaggaaga acccgaatcc
     1381 cagcaacgtc gcgtccgcgg cgtgccggat cgaggacttg tcccggttca ccttcagccg
     1441 cagccgccgt tcgaacacgt cacagacgcg gtcgaacact ctctgagcgg cccgttcgct
     1501 gcgcacgaag acccgaaggt catcggcgta acgcacgaac cgatgaccgc gcgcccacag
     1561 ctcccggtcc agatcatcca gcatgatgtt cgagaggatc ggcgagagcg gagaaccctg
     1621 cggggtcccc tcgaccgtcg cctgcctgac cccatcaacc atcaccccgg cctccagata
     1681 gctccggatg agcttgagga ttttgcggtc ggataccttg cgcgctaccc gcgccatgag
     1741 gacatcgaac ccaacccggt cgaaaaaccg atccagatca acgtcgacga cccactccag
     1801 accatcctgg acacaccgcc gcgcgacccg caccgcctgg tgggcagact tgccgggacg
     1861 aaatccaaaa gacgagccgg aaaagaacgg atcgaatacc ggcgtgagta cctgcgccag
     1921 agcctgctga atcagccgat ccaaacaggt aggtaccccc agcaaccgct cgccgccccc
     1981 gggcttgggg tcgggtgggc cgccagcgag gtgccacttg agctggtcct tttccgacgg
     2041 cctcccgcca aaccggacat gatactttcg tgatcatccg gctttctagt gatcatttcg
     2101 gtgtcgcggt aggtctcccg gcgtggatgt tgtcatggca gacggtgcaa gtgataagtg
     2161 ttttgcgtcg ccttttcgcc atgattttta tccagttcgg tttctcgttg cgccctggct
     2221 tgttcaggtc ggcaagtttg cggatgtggt ggacctccat cgggtcgtgg agccgcatag
     2281 ttcgcatcgg ccggcgagca gccgtccgat caactcgttg ccgctggtgg tgaacaggtt
     2341 gggcgatcga tcaactattg tggtcttctt ctgtctcttc agcggtatcc caccaaaccg
     2401 cgcgaccaga ggcttcctgc cgccgccacg ttccacaacg tattgcagag ccgttcgtgg
     2461 cccgtgcggg gtgtcgatgg tggtcttata tttacgggcc atcttcgcca ccgacgatcg
     2521 gtgtttgccc gccagggttt tcagcagcga ggtctgcatg acccaatgca gtttgcccag
     2581 gtggtaaaca ttgctcgcca gcaggtagta ctggacgatg ccccgatact cggcctgata
     2641 ctgcgacacg atcgagtaat catggtcgct gagcatctgc ggccgatgcc aggacttgcc
     2701 tcggcgcata tacagggcac atttacgcgc gaccacatcg cggggaacca atagcccgat
     2761 gttggcgttg gttgtgcgcc gtccccggga gtcgagcttg tcgtcgcaat gccaggtgac
     2821 gatgtcgtat cccaggaagc gggcgcgtcc ggtgtgggca tgggtgatca gcgttttcga
     2881 ttcggacagt ttcagtttga gcttatcttg caggaactgc ccgagctgct gcttgatttg
     2941 caccgcttcg gacttcgggc cgctgaaacc gaggaggata tcgtcagcgt acctgcaata
     3001 gcgcagcctt cgatatccag gatcgtgaag atccttgctg ggcaccaggc gacgttgccg
     3061 gcgtaatgcc cgcaccgctt cccggtcccc gcgtctacgc gccttgcgga tcgcccttga
     3121 catctgttcg tagtcagggt tttcccgcct gcgctgtccc cggtggtagt gcggaatcag
     3181 ttgcgtctcg acaaatttgt ccagccggtc aaggtaaatg ttagacatga tcggtgacgc
     3241 gatcccgccc tgaggcaccc cggaaagggt cgcgttccac cgccagtcct ccagataccc
     3301 cgccttgagc atcccgtcga tcagccgcag gaaccggttg tcgaggatct tctcacccat
     3361 cgtctctaac atcacctgat gatcaagcga gtcgaagcat tgggcgatat caccctcgat
     3421 aaaccagtgt gttccgttcc agacatcgac cacctcaccc aacgcggtgt ggcaaccccg
     3481 gccgggccgg aacccatgcg aacggtcaga gaactgcacg tcgtaatacg cgttgagaag
     3541 catgcgtatc acctcggcga gcagcttgtc cgaaaaggac ggcaacccca gcgcgcgtcg
     3601 cttcccatcc cgtttcggga tgtggatgcg ttttacaggc gtccaacgcc attgttcggc
     3661 ccgaacgacc gcaacgatac accggatctt gtccagggac atgccatcca cggtttcacc
     3721 ggtgacccca gcggtcatcg cacccgcatt ggcgtacagc cgctgatagg ccagcagata
     3781 caaccgtgga ttgaacaaca gtcgatacaa ccgttccacc ggcagaccac gcctgccgcg
     3841 ttcacgtaag acacccagca ccgtttcggc ctctcgcatc tcgcgcgcct cccggagttg
     3901 aatgtcccaa tcacctgtgc cccttcgccc tgtggacggc gttaccgtcc tccctggcag
     3961 atcgcgactt ctggtgaggt ag
//
LOCUS       DASVXZ010000782         3638 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1030077, whole genome shotgun sequence.
ACCESSION   DASVXZ010000782 DASVXZ010000000
VERSION     DASVXZ010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1030077"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(366..854)
                     /locus_tag="VF788_16645"
     CDS             complement(366..854)
                     /locus_tag="VF788_16645"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935774.1"
                     /translation="MSSRSLWDSDQPPFPGSEAFTEQDSVVFFGRDAEITELPDRLQP
                     PLVEQANRLVAVVDPWGVGKSSLVHAGVVPRLRLRRSGWIVVPTVVSGDHPLHRFAHS
                     VAAACPGSTVNGLPASSFAEGLRVPTRNLNAPVLVIVDQVEELITLSGHTFWATGTSE
                     CS"
     gene            1609..1863
                     /locus_tag="VF788_16650"
     CDS             1609..1863
                     /locus_tag="VF788_16650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935775.1"
                     /translation="MTRTVPSATALRMIATDGKSAHGAREPDGRAVHLLAAFDYLNGV
                     VLGQSVVEGKTTGALRNFPDKIDKTNEDSCRTRTAAGLAS"
     gene            complement(2164..2376)
                     /locus_tag="VF788_16655"
     CDS             complement(2164..2376)
                     /locus_tag="VF788_16655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935776.1"
                     /translation="MVLTRPHRLVGVAETTAWFNVAKGYTLEVTLAVITVSYLAVLLR
                     RLAKPAFRRRTLLTIAYRTASRRILR"
     gene            complement(3051..>3638)
                     /locus_tag="VF788_16660"
     CDS             complement(3051..>3638)
                     /locus_tag="VF788_16660"
                     /inference="COORDINATES: protein motif:HMM:NF019982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8935777.1"
                     /translation="DGPRLLDILSGLTSGAPKLTGLPVALHQAARGENSTLDAIITAE
                     KQRSAKSPEVFSQGLQAATVCADWTWPWGNAHTPVPGRAQATATAVAALSDSALFPYD
                     RATAVGNKTVAMCQPWPPTPVVPFPSTADLPPVPTLLLAGDHDLITPLAWNQHEASYI
                     PQGHLVVIPGAGHITQNTGNGPAGRAAVTKFLTSS"
BASE COUNT          642 a         1119 c         1203 g          674 t
ORIGIN      
        1 gtgacgtaag cccgggttac cccgggccac gggccgaagc aggtgatgat cgcgccgccc
       61 tcttagcgct ctacgtaata ctgccaaacc gatcaccgat gtgaaccgag tctatgactt
      121 cgccatgaaa agtatcacta ctttgcgtct tcctcacagc gtactgggta cctagctaat
      181 caaccagcgg ccccttgagc agctgctgga aatgcatctg cttcgccgta ccggaggacg
      241 tgatagccgc gttcgcctcc ctccccgagt tggacacgag ccaacaaccc tgcgattcaa
      301 gatcgaacca actagcggag tccggccagt gcccatcagc actcgctagc tggggcgtca
      361 gccaactacg aacactcact agtaccggtc gcccaaaatg tgtgtccaga aagcgtgatc
      421 agctcctcga cctgatcaac aattactaac accggggcat tcaggttgcg ggtagggacg
      481 cgaagcccct cggcaaaact cgaggctggt aacccgttga cggtcgatcc aggacacgcg
      541 gcggcgacac tatgcgcgaa cctgtgcaac gggtgatccc cggacaccac agttggcacc
      601 acgatccagc cactacgccg cagccgcaat cgcggcacca cccccgcatg caccaacgac
      661 gacttcccga caccccaggg atcgacgacc gccaccagcc gattcgcttg ttcgactaac
      721 ggcggctgaa ggcgatccgg caactcggtg atctcagcat cacggccaaa gaacaccacc
      781 gagtcctgtt ctgtgaacgc ctctgatccc ggaaacggcg gctgatccga atcccacagc
      841 gaacgagacg acaccgcacg atgatcttcc atccagtggc gccaaaccat cacgccgatt
      901 attgccggga aagcgtctgc caaaacaggt aatggaacat cggcgggccg aggtagtggc
      961 aaatgatgtc cctgctcgat gccgtggcat ccttgcccgt gcgtccgagg cggatcctcg
     1021 tggccggcat gtcgggcgca ggcgaatcaa ccgccgcgcg tcgtgtcgca acagtcctca
     1081 acattgcaca tattgagaac gatggactgt ttcatgggcc agggctccgg caaagtcgtc
     1141 tactgcggtg tgtctgcggc gtgacacgcc agtgatgagg taagggcggt gcggacacgg
     1201 cgctgctggt gatcatggcg gttcctacgc cagcacgatc accggagcca ttgccgtgtc
     1261 cgcctgacta tctttgccga tctccgttgc tgcgcgttcc tccgggcagg ggtgggctgg
     1321 ttctgatccg gtgcggggtg atctgcttgc cgtataggct tcggtcgagg atccccggtc
     1381 gcgtcgcggg gtgcggcacg ggttggtcac ggttctggcg attggggttt gcgcggtgct
     1441 cgccggggcg cagacgttca ccaccatcgc ggaaggggct gatgatctga ctcctgcggt
     1501 gtgtatccgg ctcggtctgg gtcgcacggc gccgagtgag tcgacgattc gccgcatttt
     1561 caggctgtcg acgccgaagc tctcgatcaa gccgtctcgg cctggttggt gacccggacc
     1621 gtcccctcgg ccacggcgtt gaggatgatc gctaccgatg gcaagagcgc tcacggtgcc
     1681 cgggaacccg acggtcgtgc ggtgcatctc cttgcggcgt tcgactacct caacggtgtt
     1741 gtcttgggtc aaagtgtggt ggagggcaag accacgggtg cgctgcggaa tttcccggac
     1801 aagatcgaca agacaaacga ggactcgtgc cgcacaagga ccgccgccgg gcttgcgtcc
     1861 tgaggcagct acgcgccggg ccgcaagcgg atcggcggct ggagcaccgg cctagccagg
     1921 tgcgaacggt gctggcccgc cgtggccgaa cccactcggt gcagtcggca gccaaccact
     1981 gcaggcggcc gcgtggcgca tgatcaaggt ggcctacatc cggggcaccg cagagcgcat
     2041 gccgcagctg gtgtcgccgg tcttgccctt ggagtcgatt gagctcatcg agctgcccgc
     2101 cggtcactgc ccgaactgag ccgacccgac ctaatcggcg agctgctcgt caatcgagct
     2161 acctcaccgc agaatccggc gactcgccgt ccggtaggcg atggtcagga gggtccggcg
     2221 ccggaaggcg ggtttggcta accgtcgcaa caagaccgcg aggtaggaca ctgtgatgac
     2281 ggcgagagtg acctcgagcg tgtacccctt ggctacgttg aaccacgcgg tggtttcggc
     2341 gacaccgaca aggcgatgag ggcgggtcag caccatggcg gtgatgccga cccatcagac
     2401 ccctgctgct ccagccgagg ggcgtagagg cagtattcca aagatctcgg tagccccgcc
     2461 tcactctgcc gatcctgaac ggaccgaccg cgacgtcacg ccggagccac ctcgtatcgg
     2521 accgtctcac acttcagcga acgcattcac atgccgctaa ccgcgcgtgg gtgtcaacgc
     2581 gagctgtgtc ccgcggccag cggaacccct ggaaggtccg gttccggtgg caagggcgca
     2641 ctggatcgag aagacaactc ttcgcttgag acacacctat cgggtgactc ccggactcgg
     2701 gctgagcctg cggtgaggtc gttggtcggc ttggttggcg gtggcgcctt atggaccacg
     2761 gcggccggat tgtgtccggg tccggctccg ggcgcgcgtg ataccgcgag ggactgttgc
     2821 attgaccgat gacctgttcg ggcagggtgg gccgatgcgt cgtcgtcatg ttcgggtgtc
     2881 accgccgtgc tgcctagccg attttctggt tggtggtgtg accgaaggcc ccgtgtccgg
     2941 cggacctctt tagggctggt gcgggaaacg gcgaactagc cctccgttgc aatcagctgg
     3001 gcatcccccg ataagcaggt cgttggcgtg tgaggcggtg gttgtgggtc tcatgagctg
     3061 gtgaggaatt tggtgacggc tgcgcggcct gccgggccgt tgccggtgtt ttgggtgatg
     3121 tgcccggcgc cggggatgac gacaaggtgc ccttggggta tgtagctggc ttcgtgttgg
     3181 ttccacgcta ggggggtgat caagtcatga tcgccggcga gcaacagcgt cggcaccggt
     3241 ggcaggtcgg ctgtggacgg gaatgggacc acgggggtgg gcggccacgg ttgacacatc
     3301 gccacagttt tgttaccgac cgcggtggcc cggtcgtagg ggaacaacgc cgagtccgac
     3361 agcgcggcca ccgctgttgc ggtcgcctgg gctcggccgg gcaccggggt gtgggcattg
     3421 ccccacggcc aagtccagtc cgcacacacg gtggcggctt gcaggccctg gctaaagact
     3481 tcgggtgact tggcgctgcg ctgcttttcg gcggtgatga tggcgtccag tgtgctgttc
     3541 tcaccccgcg ctgcttgatg cagggcgacg ggtaggccgg tcagctttgg tgcaccactg
     3601 gtcagcccgc tgaggatgtc gagcagtcgg ggaccatc
//
LOCUS       DASVXZ010000783         3142 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_448026, whole genome shotgun sequence.
ACCESSION   DASVXZ010000783 DASVXZ010000000
VERSION     DASVXZ010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448026"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(220..1107)
                     /locus_tag="VF788_16665"
     CDS             complement(220..1107)
                     /locus_tag="VF788_16665"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEX8935778.1"
                     /translation="MAAPYYLCIHGELVIVGYEPDGDSVRFIADDVTHYDALKRSDRI
                     RPSQRDGSVQLRFEGVDAPELHYGNDAQPLGDTARDALLSWIGFTAIEFDHAQPTRVT
                     AAEPATVRAAILAQMVEVNGRPVAYVLLETAGGLPADGAWVNADQALLDGTLNLRLLS
                     EGQAYYTVYTSMPVDHRRHLRAVAAETRTAGKGVWGRDSTANWLLVDQKSIGPDGQLI
                     LPKLFRRCTDYLKAVDKGFIGNLGDWLLASSATPTRDENDRVLLRDATEVHLSDLVQQ
                     RNQHIAFQADLLDLTFVEK"
     gene            1250..2461
                     /locus_tag="VF788_16670"
     CDS             1250..2461
                     /locus_tag="VF788_16670"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX8935779.1"
                     /translation="MTGVLAPLRSGWTYRRWVHLLVCGALLLPYVLLARGFTRALGPD
                     EPPFVLALLVLMTVGVAVLIGFVPAVRMLEVAAARTLLGVEVPDQTLEAARTWPVRWR
                     SAGWLLVNMVAGGAATAATLFVLLATVALAGAPFQARSSLMGWELPSGWAAAWAPLVG
                     LGLLLGLIYLVSGLGVLLSRGAATLLGPSSADKLAALRLRAAALAERNRVSRELHDSI
                     RHALIVSTVQASAARRMQDSDPQFVEAALATIEQTGRTALNNLNHVLSLLQDEPASSG
                     PQRRLEDVASLVAEARASGVPVRLTISGSFADVPVAASREAFRIVQEGLGNALRHAGP
                     VPVILRLAVTREALEVELTNPVEAGVAAGTGRGLDGMRERVEALRGVMSAEPRGGQFR
                     VVVRLPLRKSL"
     gene            complement(2458..3078)
                     /locus_tag="VF788_16675"
     CDS             complement(2458..3078)
                     /locus_tag="VF788_16675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX8935780.1"
                     /translation="MQEITSEAELRELLGHPLPRVATKERPALDASDRQFLAASPFCL
                     VATSDAEGRCDVSPKGDPPGFTLVLDDTTIAIPERPGNRRADGFRNILSNPHVGLIYV
                     IPGRPDTFRINGRARLVREAPFFEQMTVKGHRPLLALVVEIEQAFYHCPKALLRSNLW
                     RPATWDPAAVPSKAQIAQCLERPDATLEELQRYYGSAYASGLYRNR"
BASE COUNT          472 a          973 c         1114 g          583 t
ORIGIN      
        1 gaggtggtcc actgggggca ttgcatcgag gagcgacacc gccgtggtgt tgctgggccg
       61 atcacgctgg gcgcgccggg cctcttgcgg ctttcgttgc cgacgacgtc tcattcggcg
      121 acgaacctca cgggcgaggt agcgccatac cgtccgagga gttcggcgga gtagccatat
      181 ccccatttca catcgatgcc atactcatga ccagcgccgc tatttctcca cgaatgtgag
      241 gtcgagcaag tctgcttgga aggcgatgtg ctggtttcgc tgttggacga ggtcgctgag
      301 atgtacttct gtggcgtccc gaagcagcac ccgatcattc tcatcgcggg tgggtgtggc
      361 ggaactggcg agtaaccagt cgccgaggtt gccgatgaat cccttatcca cggctttgag
      421 gtagtccgtg caccgccgga aaagcttcgg aaggatgagc tgaccgtcag gtccgatgga
      481 tttctggtct accagtagcc aattcgcggt ggaatcccga ccccagacgc cctttccggc
      541 ggtacgcgtc tcggcggcca ctgcccgcag atgacggcgg tgatccaccg gcattgacgt
      601 gtacaccgtg taataagcct gcccttcgga gaggagccgc aggttcaggg tcccgtcgag
      661 cagagcctgg tcggcattga cccaagcacc gtccgctggc aggccgccgg cggtctcaag
      721 gaggacgtaa gcgactgggc ggccattgac ttccaccatc tgagcaagga tggccgctcg
      781 gactgtagcc ggttcggcgg cggtgacccg ggtcggctgg gcgtggtcga actcgatggc
      841 cgtgaagccg atccagctga gcagcgcgtc tctcgcggta tctccgaggg gctgggcatc
      901 gttgccgtag tgcagttccg gagcgtccac cccctcgaag cgaagctgga cactaccgtc
      961 gcgttgtgac ggacggatcc ggtcggaccg tttcagcgcg tcgtagtgtg tgacgtcatc
     1021 ggcgatgaac cgcaccgagt ctccgtcagg ctcgtaaccg acgataacca attcgccatg
     1081 aatgcagaga taataaggcg ctgccactga acctctcctt tgagctaagc gggtctgcac
     1141 tcgggcgggc gcaggcaagc tgaagatctg tggagcacgg tctggcagaa gctatcctgg
     1201 ccggacgttc ggtggctcag gaggcctgtg ctctgccacc attgaaagcg tgaccggcgt
     1261 attggcgccg ctacgcagcg gatggaccta ccggcggtgg gttcacctgc tcgtatgcgg
     1321 tgcgctgctg ttgccctacg ttctcctggc ccgaggcttc acccgcgcgc tcgggccgga
     1381 tgaaccccct ttcgttctgg ctctgctcgt cctgatgacg gtgggagtgg ctgtactgat
     1441 cggcttcgtg cctgccgtgc ggatgctgga ggtcgcggca gcccgcacgc tgctcggagt
     1501 cgaagttccc gaccagaccc ttgaggcggc ccggacctgg ccggtgcgct ggcgcagcgc
     1561 gggctggttg ctggtcaaca tggtcgccgg tggagcggcc acggcggcaa cgctgttcgt
     1621 actactggcc acggtagctc tggccggggc gccgtttcag gcacgttcgt cactgatggg
     1681 ttgggagctc ccgtcgggct gggccgcagc ctgggcgccg ctggtcgggc tcgggttgct
     1741 gctcgggctg atctacctgg tctcggggct cggtgtgctg ctttcccggg gggcagccac
     1801 cctgctcggg ccgagctccg ctgacaagct ggccgcattg cgcctgcggg ccgccgcgct
     1861 ggctgagcgc aaccgggtga gccgtgagct gcacgactcg atccgccatg ccctgatcgt
     1921 cagcaccgtg caggccagtg ccgcccggcg gatgcaggat agtgacccgc aattcgtcga
     1981 agctgcgctc gccaccatcg agcagaccgg ccgtaccgct ttgaacaatc tcaaccacgt
     2041 gctgagcctg ttgcaggatg agcccgccag cagcgggccg cagcggcgcc tggaagacgt
     2101 cgcgagcctg gtcgccgagg ctcgcgcttc cggtgtgccg gtgcgcctga cgatatccgg
     2161 cagcttcgcc gacgtgccgg tggcggcatc tcgggaggcg ttccggatcg tccaggaagg
     2221 cttgggcaac gccctgcgcc acgccggtcc ggttccggtg atattgcggc tggcggtgac
     2281 ccgggaggct ctcgaggtgg agctcaccaa tccggtggaa gccggggttg ccgccggtac
     2341 gggccgcggc ttggacggta tgcgtgagcg ggtcgaggcg ctgcgcggcg tgatgagcgc
     2401 ggagccgcgc ggcgggcagt tcagggttgt ggtgcgcttg ccgctgcgaa agtcgctcta
     2461 gcggttgcgg tagagacccg aggcataggc ggagccgtag tagcgctgca gttcctccag
     2521 cgtcgcgtcc ggccgttcca ggcattgggc gatctgggcc ttggatggca ccgcggctgg
     2581 gtcccaggtg gctggccgcc acaggttcga gcgcagcaac gccttcgggc agtggtagaa
     2641 cgcctgctcg atctcgacga cgagtgccag cagcggacgg tgacccttca ccgtcatctg
     2701 ctcgaagaag ggggcttcgc gcactagccg cgctctgccg ttgatccgga aggtgtcggg
     2761 acggccgggg atgacgtaga tcagcccgac gtgcgggttg gacaggatat tccggaagcc
     2821 atcagcgcgt cggttgcccg gccgttccgg gatggcgatt gtcgtgtcgt cgaggacgag
     2881 ggtgaagccc ggcgggtcac ccttcggcga gacgtcgcag cgcccctcgg cgtcgctcgt
     2941 ggcgaccagg cagaacgggg aggcggcgag gaactgccgg tcggacgcat cgagcgccgg
     3001 gcgctccttg gtggccacgc ggggcagcgg atggcccagc agttcccgga gctccgcctc
     3061 gctggtgatc tcctgcaccc ggccagtctg ctccggtgct catccgaagg cgtccatcgt
     3121 cgtcttcagg acgacgccgt ag
//
LOCUS       DASVXZ010000784         2507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1612813, whole genome shotgun sequence.
ACCESSION   DASVXZ010000784 DASVXZ010000000
VERSION     DASVXZ010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1612813"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VF788_16680"
     CDS             complement(<1..437)
                     /locus_tag="VF788_16680"
                     /inference="COORDINATES: protein motif:HMM:NF015038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935781.1"
                     /translation="MGQFLSKKRTAQALAELFGTPVSEGTVATVTQRAADGLDDFLEL
                     VKDRIAESEVAGFDETGLRVAGRLHWVHCARTGKYTLITCHFKRGREGTDDAGVLGRF
                     RGVAVHDAWAPYDTYVDAEHQLCCATPCASWPAWPTPHPRPNGA"
     gene            complement(541..948)
                     /locus_tag="VF788_16685"
                     /pseudo
     CDS             complement(541..948)
                     /locus_tag="VF788_16685"
                     /inference="COORDINATES: protein motif:HMM:NF040425.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6444 domain-containing protein"
     gene            complement(1236..1916)
                     /locus_tag="VF788_16690"
     CDS             complement(1236..1916)
                     /locus_tag="VF788_16690"
                     /inference="COORDINATES: protein motif:HMM:NF024298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEX8935782.1"
                     /translation="MERRRCSSPHGSGPALTGYTDSVNAVAFSPDGHTLASGSDDHTI
                     RLWTLPSAIITGHTSTVYAVAFSPDGHTLASGSSDQTIRLWNITNPSHPTPLGPPLIG
                     HTGSVHSVVFSPKGHILASSSNDQTVRLWNVTDPTHPTSGTPLTGHTSSVNAVAFSPD
                     GHTLASGSNDQTIRLWEINIAKTIRRICATTSNTLTPAKWEQYVSTNLPYNSALLVIF
                     HNQTHRLI"
     gene            complement(1868..>2507)
                     /locus_tag="VF788_16695"
     CDS             complement(1868..>2507)
                     /locus_tag="VF788_16695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935783.1"
                     /translation="QECVADIAAAVRNVPKDALVGEHIRYHRRAMRLARGGVIALVVL
                     LIAALVAAVVAWKQSATAREERDNAIFNQVTAQADRLRSTDVSLAAQLELVAYRMRRT
                     PDLHTALITLGNAALSAPLSGHTNTVKAVAFSPDGRTLASGSFDRTVRLWNVIDPAHP
                     SPLGPPLIGPTDVVRSVAFSPDGHTLATGSADQTVRLWNVADAAHPTALGQR"
BASE COUNT          465 a          747 c          815 g          480 t
ORIGIN      
        1 gcaccattcg gcctcgggtg cggtgtcggc cacgccggcc aactcgcgca gggcgtggca
       61 cagcagagtt gatgttcggc atcaacatag gtgtcatagg gtgcccacgc atcgtggacc
      121 gccacaccgc ggaaccggcc caggacgcca gcgtcgtcgg tgccctcccg accgcgcttg
      181 aagtggcagg tgatcagggt gtacttgccg gtacgggcgc agtgcaccca gtgcagccgc
      241 ccggccacgc gcagaccggt ttcgtcgaac ccggccacct cggactcggc gatacgatct
      301 ttgaccaact cgaggaagtc gtcgagcccg tcggcggcac gctgggtcac ggtggccacg
      361 gtgccttcgg agaccggggt gccgaacaac tcggccaggg cctgggcggt gcgctttttg
      421 gacaggaact gccccacata caaatagagg atgatcgcac tgatccgcgg cccgtactcc
      481 caccggcgcc gtcaccccct ccggggcact accgcaggtc gtggtcccac aagtgcagcg
      541 gcgcgcgatg agctggtgct cggtcacccg caccgtcatc ggcggcagat cgaatacctg
      601 ccgccgctcc acactcacct ccggcgcgtc cctcaggtct gccccgcacc cagtgcaccg
      661 gccaggttca tgccgcttcc gttcgttcgg atcatcgacc agcgccaatg tcgaaccccg
      721 atgacctggc tgaccacccg gcttgcgccc gctcctaccg cgcagcgact tcggagcggg
      781 cttggtgaac ggggagtctg acgacggcgg ctttgacgag ttccggctgt tctgacccaa
      841 ctgccgacgc aactcagcga cctcggcctc aagctgctca atccgctcag cctgccgcac
      901 taccagagca gcgagctcct catagcacgg acggcgatca gtggacaccc caccatggtc
      961 aacaagatgc cagcgagatc aactagccac gccggagacc tgaccagtca cagcagagaa
     1021 attcccagat catgacgaag cacaatgttt ttcgcgtcgc ctggctccac atggcgggta
     1081 gtgagggtcc gtaagggatt gggtatcccg ttatggtgtt cggtcgcggc ttgactggcg
     1141 gctcaacagc acatattcgg gatggtagtg tcattggact gcgctggcag atgaatgctg
     1201 aaggcgttcc ggtgaggctt tgaaggggtg gctgatcata tgagccggtg agtttggtta
     1261 tggaatatca cgagcagggc ggagttatag ggaaggtttg ttgatacgta ttgttcccat
     1321 ttcgcgggag tgagggtgtt tgaagtggtt gcacagattc gccgaattgt cttggcgatg
     1381 tttatttccc acagtcgaat ggtttggtcg ttactgccgc tggccagcgt gtggccatcg
     1441 gggctaaacg ccaccgcgtt gactgaactg gtgtgacctg tgaggggtgt gcccgaggtg
     1501 ggatgggtcg ggtcggtgac gttccacagt cgcacggttt ggtcattgct actgctggcg
     1561 aggatgtgcc ctttgggact gaagaccacg gagtggaccg agccggtgtg accgattagg
     1621 ggcggcccca atggcgtggg atgggacgga ttggtgatgt tccacagccg tatggtttgg
     1681 tcgctgctgc cgctggctag ggtatgccca tcggggctaa acgccaccgc gtagacggtg
     1741 ctggtgtggc cggtgatgat cgcagaagga agggtccaca gccggatcgt gtggtcgtcg
     1801 ctgccgctgg ccagagtgtg cccatcggga ctaaacgcca ccgcgttaac cgagtcggtg
     1861 taaccagtca acgctggccc agagccgtgg ggtgagctgc atcggcgacg ttccacaatc
     1921 gcaccgtctg gtcggcactg ccggtagcaa gggtgtgccc atcagggcta aacgccaccg
     1981 accgaacgac gtcggtagga ccgatcaagg gtggtcccag cgggctggga tgagccggat
     2041 cgatcacgtt ccacaaccgc acggtccggt cgaagctgcc gctggccaga gtgcgcccat
     2101 caggactaaa tgccactgct ttgacagtat tggtatgccc actcagggga gcagataagg
     2161 cggcgtttcc cagggtaatc agcgccgtgt gcagatccgg ggtgcgccgc atgcggtagg
     2221 cgacaagctc gagttgagcc gctaaagata catccgtgct acgcagccgg tcagcttgag
     2281 cggtgacctg attaaaaata gcgttatcgc gctcttccct cgcagtagcg ctttgtttcc
     2341 aggcgacgac tgcggccact agtgccgcga tcaacagcac caccaaggca atgacgccac
     2401 cacgggctag ccgcatggcg cggcggtggt agcgaatgtg ctcacctacc aacgcgtctt
     2461 tggggacgtt acgtacggct gcggcgatgt cggccacgca ttcctgc
//
LOCUS       DASVXZ010000785         2600 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1791096, whole genome shotgun sequence.
ACCESSION   DASVXZ010000785 DASVXZ010000000
VERSION     DASVXZ010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2600
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1791096"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1016..2167
                     /locus_tag="VF788_16700"
     CDS             1016..2167
                     /locus_tag="VF788_16700"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8935784.1"
                     /translation="MPTVLIIGGGVAGTAAALALDKAAYDVTVYEAHPVNSHDRGAFL
                     TLASNGMHALRQIDADTAVCATSAPLRTMRVCADEGQEIATVALGDSHEPVTEYRYLT
                     RAELCSALQRQAQDRGIRIERDKRLTQISTNSGAVTAMFSDGSRACGDVLIGADGLRS
                     VVRTALNRTASAPRYAGERVFYGYSTNTGVDSPPDHFQVIRGSAAFGYIVTKQHDTWW
                     FCRVNDTELSHYQLTTGTTASWKAELSTHLRDDQTPAAAIVRAAHQVMVTNAYDLPHL
                     RIWHRDHALLIGDAAHAASPATGQGASLALEDAIVAAKVLRDSPDPKSAFVLYERLRR
                     DRVQANIDHSAHMSARHRLKWPQLPPARQRITNLNDAIHTQLQWHTPLA"
BASE COUNT          548 a          920 c          689 g          443 t
ORIGIN      
        1 caaccagatc gaagcattcc tcggccgaga cccatcccat cgagcattcg atcagcttcg
       61 cgcggcagca aacctctgat ccatagcagg aatgccaagt tcagagaagc gtggctaaga
      121 catgcggcaa gcctgcccca agcgcgatgt cggccgccga gcggcagcag gcgcacgtgg
      181 actgaactca tcgaggccag cacccaggga ttcgcccaaa tccgcatacg ccggcctcgt
      241 caacaggtcc agcacaagcc cgttcggcat cggtcagttc acgaggtagc gggtgttgta
      301 cacgacaacc aagacccacg catcagaacc ctacgagata cttgcgtctt actagcactc
      361 cgcgcaagcc gctgacctgc ggaatttgcc atgacagggc gctccccagc gtcatagacc
      421 gcgagaccta gcgcgaagcg cccgtggagc tgcgcgagcg cctcgatgag cacgagatca
      481 ccgaactgat caccgactac tccaaacggc accacagccg ccttcctcac tactacccca
      541 cgacgtgagc ccaagcagcg tcaagcgtct cccacgcacc gccggtatcc accggagcac
      601 acccactcga caagctccta aggcgatacc ggccacgacc atccgtagcc gcttccgccc
      661 ggagtttccg ccggatcccg atctggcatg agcaggacaa cttggcgatg gcgcctgcga
      721 tgagaccgag caggggccaa ccgatgatgc cgaccaatag ttgtttccgt tgtgatctga
      781 ctcaccggtt ctggcatcag aatcgactat cttttctaga ttatatcctc acgaacgagc
      841 atccttattc gcatttgatg ttttctttac gctgtattgc ctactctgtg tttatgaaga
      901 tagtcgctca ccttaacaat cgctggttgc cgccacagca caaggcgcac cagcaggtcc
      961 gaccgcatca ccaaacggcg cccagcggcc taacattcgg ttgtcgagcg cactgatgcc
     1021 cacggttttg atcatcggtg gaggtgtcgc tggtaccgcc gcggcgctgg ctttggataa
     1081 ggctgcttac gatgtgacgg tttatgaggc tcaccccgtc aacagccatg accggggagc
     1141 attcctcaca ctggccagca acgggatgca cgccctgcgc caaatcgacg ccgataccgc
     1201 cgtttgcgcg accagcgcgc cgctacgcac gatgcgggtc tgcgccgacg aaggtcagga
     1261 aatcgctact gtagccctcg gggattccca cgaacccgtc accgaatacc gttacctgac
     1321 ccgtgcggag ctatgttcgg cgctgcaacg gcaagcacaa gaccggggaa tccgcatcga
     1381 gcgggacaaa cgcctcaccc aaatcagcac taacagcggc gctgtcaccg cgatgttcag
     1441 cgacggttct cgggcctgcg gtgacgtgtt aatcggggca gacgggcttc gctctgttgt
     1501 ccggaccgct ctcaaccgga ctgcatccgc cccgcgctac gccggagagc gtgtgttcta
     1561 cggctactcc accaacaccg gggtcgacag ccccccagat cacttccaag tcatccgggg
     1621 ctcggccgca ttcggctaca tcgtcaccaa acagcacgac acctggtggt tttgccgagt
     1681 caacgacacc gaactgagcc actaccagct caccaccggc accacggcaa gctggaaggc
     1741 cgagctgtcc acccacctgc gcgatgatca gacaccggcg gcagcgatcg tgcgcgccgc
     1801 ccaccaagtg atggtcacca acgcctacga tctcccccac ctgcgcatct ggcaccggga
     1861 tcacgcgctg ctcattggtg acgccgccca cgccgcttcc cccgcaaccg ggcaaggcgc
     1921 ctccttagcg ttggaagatg cgatcgtcgc ggccaaggta ttgcgcgata gtcctgatcc
     1981 caagagcgca ttcgtcctgt acgaacgact acgccgcgac cgcgtacagg ccaacatcga
     2041 ccacagcgcc cacatgagcg cgcgacaccg actcaaatgg ccccaactcc ctccagcccg
     2101 ccagagaatc actaacctga acgacgcgat ccacacccaa ctccaatggc acacaccact
     2161 tgcctagata ccaactggat taatgcgcgc tgctcagccc gcaggcgaac cggacgatgc
     2221 tgcaccggct gcggtccgcg ctgcgcgacg acaagacacg gaccatcgtc gacgccctac
     2281 tgcgaaaccc caaaaagccg gtcgcttgcc ctcgatgctc tgggtcggcg catgcgcatg
     2341 tccatgcagg gcaacttcac gttcgcgccg gccctctctc ctcggtgagg ctcgtgtccg
     2401 acccgtaccg acggactccc cgcaccccaa gtcgactcgg cgacgctccg cagctcttcc
     2461 cctcgactcg gtcgcctaac tcgatcacgg gcgactcggt catcggcatg gtcacccaca
     2521 aagatggtgt caaccgcgct ccgcgacgaa ctgtgcgcca gcgccgctgc tccgtccctg
     2581 tagcgctggc gtggactttc
//
LOCUS       DASVXZ010000786         5486 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1658526, whole genome shotgun sequence.
ACCESSION   DASVXZ010000786 DASVXZ010000000
VERSION     DASVXZ010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5486
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658526"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VF788_16705"
     CDS             complement(<1..684)
                     /locus_tag="VF788_16705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX8935785.1"
                     /translation="MSTPDEPSDISAADRLRRIESVTEASLAYLDVEDLLHELLERVQ
                     GLLEVDTAAVLLLDPSTDQLVATAARGIEAEVHQGVRIPVGKGFAGRIAAEKKPVILE
                     HVDHTNVLNPVLRERGIRSLLGVPLLSGGNAIGVMHVGTLGARQFTDDDVRLLQIVAD
                     RVAFATESRRAEVERTAATVLQRSLLPRRLPVVPGCEMAARYIPAEHGGVGGDWYDVF
                     TLPSGELCVV"
     gene            complement(1858..2202)
                     /locus_tag="VF788_16710"
     CDS             complement(1858..2202)
                     /locus_tag="VF788_16710"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8935786.1"
                     /translation="MPLIGLQVTEYGPDARVVTVTGEVDALTAPTLATCLSAQLAVAQ
                     VVVVDLDGLKFLASAGLRVLFETNELAIERDRHLRFVCNCPLANLALETTGLRQHLIF
                     FDNVADALSNGL"
     gene            complement(3074..3823)
                     /locus_tag="VF788_16715"
     CDS             complement(3074..3823)
                     /locus_tag="VF788_16715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8935787.1"
                     /translation="MGVVLVHGNPETAAVWSPLVAALGRGDVTCLSPPGFGAPVPHCW
                     GATVEEYRAWLIGELEAFGRPVDLVGHDWGGAHAVIVAMTRPELLRSWTTDAIGIFDP
                     EYVWHDLAQTWQTPGAGEETVTMMAAATPQQRADRLTSLGLTVEIAEQLAHAYNDTMG
                     RCILALYRSAAQPTMAELGRGLSAAAQRPGLAVLATEDHYVGTDEMRRRAAERAGAGI
                     EVLDGLGHWWMVQDPARGADVLNRFWASLPG"
     gene            4313..5389
                     /locus_tag="VF788_16720"
     CDS             4313..5389
                     /locus_tag="VF788_16720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012606173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8935788.1"
                     /translation="MPQPIHHDQDDTAEVILGVDTHKDLHAAAVISPVGVLLSSETFP
                     ATAAGYRALLAWASRFGTVRRAGVECTGSYGAALARHLRAAGVKVIEVNQPDKATRRR
                     RGKTDTIDAESAARAVLSGRASSSAKAGDGPVEMLRMFKLAKASALKARTQTINQLKA
                     VLVAADPALREALSGLSNTLLIRRCTQLELDTPCDTTSAAAYTLRLLARRILTLTSEI
                     RDLEHQITAAITNHTPTLLTRRGIGPDNAAALLIAAGDNPDRLRSEASFAALCGVSPL
                     EASSGRTSRRRLNRGGDRQANAALYRIALSRLRWDTRTRDYLNRRITEGKTRREAIRC
                     LKRYIAREIYQIITAPPEAEPSAA"
BASE COUNT         1025 a         1810 c         1693 g          958 t
ORIGIN      
        1 cacgacgcac aactcaccgg aggggagggt gaacacgtca taccagtccc caccgacccc
       61 accatgctcg gcgggaatat agcgggcggc catttcgcaa ccgggtacca ccggcagccg
      121 cctgggcagc aggctgcgct gcagtaccgt cgccgcggtc cgctccacct cagcgcgccg
      181 cgattcggta gcgaaggcga cccggtcagc cacgatctga agcagcctga cgtcgtcgtc
      241 agtgaactgg cgggcaccta gggtgccgac gtgcatgaca ccgatggcat tcccgccgct
      301 cagtagtggc accccgagca gagagcggat cccacgctcc cgcaggaccg gattgagcac
      361 gttggtgtga tcgacgtgct caaggatcac cggtttcttc tctgctgcga tccgaccggc
      421 aaaacccttc cctaccggaa tccgaactcc ctgatgaacc tccgcttcga tccccctcgc
      481 ggcggtagca acaagctgat cagtggaggg atccagcaga agcaccgccg ccgtgtcgac
      541 ctcaagaagc ccttgaaccc gctccagcag ctcatgcaag aggtcctcga cgtcgaggta
      601 ggccagcgac gcctcggtca ccgactcaat ccggcgcaat cgatcagcag ccgagatgtc
      661 acttggctcg tccggcgttg acatgagcaa aacatcgtaa cccacgagac cgtgcaaaaa
      721 ccgtatagaa agttggcagc cacaggacaa cgatcggtgc tgatcgatac tcgcgcgtgg
      781 tgctgttgcc cgcggtacga gcggtgtccg gcgtgccgta gacggtggtg gtgtcgtgtc
      841 cgctggccat gcgccgtgtg gtgccgcgcg catcttgcgc tgttcagctc ctgcgtggaa
      901 accggggacc ggccgtgaac accgaccaac ctggcgcatc aaacgtgact cgaaccgctg
      961 agtgatccac gtgcactgcg cggtacacgg cagtcttcga ggttcacaaa cctggtcgtc
     1021 accaaacgtg acggtgaaat ggagatgaat ccgcacgtca ccggtaatgc gtggtcatct
     1081 tcgaggggaa ggccacctcc gcgttgttgg atgccctcgg gagtggttgg gatgagcggg
     1141 ttttcctcgt tcgcggcgat gaggcgcgcg cctcggcgtg agttggtgac gaactaaggg
     1201 ttgattcagt cgagactaag atcatccgta ggccggtttc ttagactctt ttttgtgacc
     1261 gcgatctttc acaggcaggt tcgcgtgagc cagagaggag tagagaattc cggccgggcg
     1321 ccgccggttg agcgggagtg gttcccgtcc cccgcaacgg ctcccgaaag gctcctggcg
     1381 gcccggccgg ttccagccaa gtaggttcgc agtggtgcag ctcactgaga aaacgaaacc
     1441 ggtcgccggc cttggctacc cctgggcgga cgcttatacc tttagcgccg acttaacacg
     1501 ccgcacccac tgccgtctac cggcttgccg cgctagttct accggtgcac atccttgagc
     1561 gccgttctcc ttaagaaaaa ggcttacagt ggtggtgttc taatgcagtc tgaccctatt
     1621 gacataacca agatcgcatc cgatgacgaa ctgctcgacc gcgtcgggtg tgggtggctt
     1681 cccgtggcag aacaggacga actgatccgt gtcctcgtcg tgtggcgtga ccgctggagg
     1741 gctgcacggc cttcatgatc acgccacagc gtttatgatc tcagcgagat cttgaacgcc
     1801 ttcgctgatc atgaaagcgc ttctctgaag ggggcgcctt ctactcgcgg attcgggtca
     1861 cagcccgttg cttaatgcgt ccgccacgtt gtcgaagaag atcaagtgct gacgcagtcc
     1921 ggttgtttcc agtgccagat tggcgagtgg gcagttgcac acaaaccgca gatggcggtc
     1981 tcgttcgata gcgagttcgt tcgtctcgaa tagcacgcgc agcccggcag atgccaggaa
     2041 cttgagacca tcaagatcta ctacaacgac ctgggcaacg gcaagctgcg cggacagaca
     2101 ggtggcgagc gtcggcgcag tcagcgcgtc cacctcaccg gtcacggtga cgacgcgtgc
     2161 gtcgggaccg tactcggtga cttgtagacc gatgaggggc accgggaatt cgctgttcac
     2221 agccgtatga taggggatag tcaacacaaa acgtccacgc cgctggcagg tcggtgctgg
     2281 ctattgagcg ccgcttctct ccaggacatg gcccgctgct aaaggatctt ggctgctagg
     2341 gtagctgccc tgaagctgtt gaccaagctc gccggacgag tacctgctgc tggatgtgct
     2401 ccgagggcgt gtactggatc ggttgttgga cgacggcaca aacagatgac ggcgcgccga
     2461 atgactctgc ctcggcccct cgggattcag ataagcgagg gacaaggaca cgtcggtgat
     2521 ggctgaatgg atccagcgtt acatgatctt gcacggagtg tgctggagct cgtccgtggc
     2581 ctggcgcacc tagtcatcga ctccccgatg actgcgctgc tgctctgatc ttggtatccg
     2641 tgggttgaac gaggctatga gatgacaggt cacacattgc caaataacga gtagggtgca
     2701 tttgatccgt cagtcaagtt tttctgcgcg ggagccttgc gacttgttcg tggagtggct
     2761 tggtgggcgg cccccaccgc gctccccacg ggctgcttcg gcacggcctg tgtcgctacc
     2821 cgcgcgaacc gcggcggaac aggacgatgc gtccgccggc ccagcgtgca tgaccatgcg
     2881 ctggtgtgcg gcaggattcc tacgggggaa gctcaggtac tcgacagtgg cgacgtatca
     2941 gctcagcatg cccgaggctg tcatctacca atgcaactgc ccacagacct gctgcgcgta
     3001 aagggaatcg gttcacgggc cagccatcat gaaccacgtc caccaattcc agcgcggtca
     3061 tacgctacgc ggttcagcct ggaagcgatg cccagaaccg gttgagcaca tcggcgccgc
     3121 gcgccgggtc ttggaccatc caccagtggc cgaggccgtc gagcacttcg atcccggcgc
     3181 ccgctcgttc ggccgcgcgg cgacgcatct catcggtccc gacgtagtga tcctcggtgg
     3241 ccagcacggc gaggccggga cgctgggccg cggctgacag cccgcggccc agctcagcca
     3301 ttgtcggctg cgccgccgag cgatacaggg ccaggatgca tcggcccatc gtgtcgttgt
     3361 atgcgtgggc cagttgctcg gcgatctcca cggtgaggcc tagtgaggtc agtcggtccg
     3421 cccgctgctg cggtgtggcg gccgccatca tggtcacggt ctcctcgccg gcgcccggtg
     3481 tttgccacgt ctgcgcgaga tcgtgccaga catactcggg atcgaagatg ccgatcgcgt
     3541 cagtggtcca gctgcgcagt agctcggggc gggtcatcgc cacgatgacc gcgtgggcgc
     3601 caccccagtc atgacctacc agatcgactg gtctcccgaa cgcctcgagc tcgccgatca
     3661 gccacgcccg gtactcctcg accgtagcgc cccagcagtg tggaactggg gcaccgaacc
     3721 ccggtgggga cagacaggtt acgtcgccgc ggccaagcgc cgcgaccaac ggactccaca
     3781 ccgctgcagt ctcgggattg ccgtgcacca gcaccacacc catgacagcc tcccgttatc
     3841 gacgcctccg gcccacgttg tcccaaccta tgcaggcgta gggaagcgcg tggcggcgtt
     3901 tcctacctcg tcgtgcgctc tcggcggcac agttgcatta agtatcggcc catccgactt
     3961 ggtccaccct gcccgtccag aaaccggtag cacgccttct tgcctatccc aacttaacaa
     4021 cgcaactgtg aggatcggcg tgtaccaccc gaggtcctga tctgaatgtg aggatcgccg
     4081 gcgtgccatc ccgggccatg gtctgacccg caacgcaact ggcgtgaatg ccttgggact
     4141 gatctgtcgg ccctggcttg gggtggtgct tgctgtcgcc ggaccgggtg ggcgtgtccc
     4201 gataggggcc ttgccgtcaa cagggcaccg tcacagttct gaccgcccac accggcccgg
     4261 cgacggccat ccattcccgt ggcgatcagg agacagacga cccgtgtcca gcatgcccca
     4321 accgattcac cacgaccagg acgacaccgc cgaggtaatt cttggtgttg atacccataa
     4381 ggatctgcac gctgcagcgg tgatcagccc ggtgggcgtg ctgctgagca gcgagacgtt
     4441 cccggccacc gccgccggct accgggcatt gctggcctgg gcaagtaggt tcggcacggt
     4501 gcggcgggcc ggggtggagt gcaccggctc ctacggtgcg gcactagccc gtcacctgcg
     4561 ggcggccggt gtcaaggtga ttgaggtcaa ccaaccggac aaggccaccc gccgtcgccg
     4621 gggcaagacc gacaccattg acgccgagtc cgccgcccgg gcggtgctca gcggccgggc
     4681 cagcagcagc gcgaaggccg gtgacgggcc ggtagaaatg ctgcggatgt tcaagctggc
     4741 caaggcctcc gctctcaagg cccggaccca gacgatcaac caactcaaag ccgtgctcgt
     4801 ggcggccgac ccagccctgc gcgaggcact gtcgggcctg agcaacaccc tgctcatccg
     4861 tcgctgcaca caactggagc tcgacacacc ctgcgacacc accagcgccg ccgcctacac
     4921 cctgcggcta ctggcccggc gcatcctgac gctcaccagc gagatccgcg acctggagca
     4981 ccagatcacc gcagccatca ccaaccacac ccccacgttg ctgacccgcc gcgggatcgg
     5041 cccggacaac gccgccgccc tgctcatcgc cgccggtgac aaccccgacc ggctgcgcag
     5101 cgaggcatcc tttgccgccc tgtgcggcgt cagcccgttg gaggcgtcct cgggcagaac
     5161 cagccgtcgc cgactcaacc gcggcggcga ccgacaagcc aacgccgcgc tctaccgcat
     5221 cgccctgtcc cggctgcgct gggatacccg cacccgcgac tacctcaacc gccgcatcac
     5281 agaaggcaaa acccgccgcg aagccatccg ctgcctcaag cgctacatcg cccgcgagat
     5341 ctatcagatc atcaccgccc cacccgaagc cgagccgtca gcagcttgac atccataggg
     5401 gcatcaggtc gaagcggtag gaacggcacg acgacgggct gctcccgcag gccagcagat
     5461 cacgcaagaa ctgcaccacc ggttcg
//
LOCUS       DASVXZ010000787         1611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1658632, whole genome shotgun sequence.
ACCESSION   DASVXZ010000787 DASVXZ010000000
VERSION     DASVXZ010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658632"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(328..888)
                     /locus_tag="VF788_16725"
     CDS             complement(328..888)
                     /locus_tag="VF788_16725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3000 domain-containing protein"
                     /protein_id="HEX8935789.1"
                     /translation="MLDLADAPEIFRHAVTAINALQPRPELTFEPIPAPRRLAPWTYA
                     WGLDLSGAGQPAATGRLVLLHDPQGQDGWDGTMRLVGFVRAELDIELAGDPLLAAVSW
                     SWLADSLVNSGAEHSALGGTVTQTSSTRFGAIAGPERSNDIELRASWTPVGDGLMAHA
                     AAFCELMAAAAGLPPVGVVALGRRLS"
     gene            985..>1611
                     /locus_tag="VF788_16730"
     CDS             985..>1611
                     /locus_tag="VF788_16730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HEX8935790.1"
                     /translation="MTKTSAPAIARRLLPDAPLLAAARGERPEQQPVWFMRQAGRSLP
                     EYRALRANQPMLAACMTPELACEITLQPVRRHKVDAAILFSDIMVPLHAAGVGLDIVP
                     GTGPVLDRPVRTASDVRALPILDPDAVEPVAAAVRLLVSELGQTPLIGFAGAPFTLAS
                     YLIEGGPSRNHEHTKALMHAEPAVWHALLERLAELTLTFLRVQVAAGVD"
BASE COUNT          275 a          544 c          544 g          248 t
ORIGIN      
        1 cctgacggtc gcgccgtatc cgacagcagc cacgtagcta cctccctgga gtcggtcgtg
       61 cccccgaccg caccgggacc tcgtccgagc aaccgcgccg ccgctcgagc gaggatggtg
      121 tcgtacgggg cagactatcc ccccgagcgg cgtaacgggg ggccctgagt gaaccttctt
      181 gccgatctgc ccgcaaaccc gcgatcggag gtcgcccgat caggggagag tcggcaccgc
      241 gcggtaacac cagtgcaatg ctgggcgatt taccctatta acgcaatacg gaagctgtcg
      301 cccgaagaag gtccagaccg gtgggcgtca gctaagccgg cggccgagag cgacaacccc
      361 gacaggggga agtccggccg ctgctgccat cagctcgcag aaggctgcgg cgtgtgccat
      421 caaaccgtcc ccgaccggtg tccacgatgc gcgcagctcg atgtcgttgc ttcgctcggg
      481 tccggctatt gcgccgaacc gagtcgacga ggtctgagtg acggtgccgc cgagagcgct
      541 gtgctcggcc cccgagttga ccagcgagtc ggcgagccag gaccagctca ccgcggcgag
      601 caatgggtca ccagccaatt cgatgtccaa ttcggcacgg acgaagccaa ccaaccgcat
      661 ggtgccgtcc caaccgtcct ggccctgcgg gtcgtgcagg agtaccaatc gaccggtcgc
      721 tgccggctgg ccggcaccgg aaaggtccag gccccaggcg taggtccagg gagcaagccg
      781 acgcggcgcc gggatcggct cgaacgtcag ctcgggccgt ggctgcaggg cgttgatcgc
      841 ggtcactgca tgacggaaaa tctccggggc gtccgcaagg tcgagcacac cccaaactgt
      901 aggaggaccg tcgtcgacag tcccgccgaa acgccggggg agggtccagt ggtggggtcg
      961 gtacgtggga cgatgggtgt tgagatgacc aagacaagtg caccggccat cgcccggcga
     1021 ttgcttcccg acgcaccttt actagctgct gctcggggtg agcgcccgga gcagcagccg
     1081 gtgtggttca tgaggcaggc cgggcgttcg ctgcccgagt atcgggccct tcgagccaac
     1141 cagcccatgc tcgctgcctg catgacaccc gagctggcgt gcgagatcac cctgcagccg
     1201 gtgcgccgtc ataaggtcga cgccgcaatc ctgttcagcg acatcatggt gccgctgcac
     1261 gccgcgggcg tcgggctgga catcgtgccg ggcaccgggc cggtactgga ccgcccggtg
     1321 cgcaccgcct ctgacgtcag ggcattgccg atcctggacc ccgacgcagt cgagcctgtc
     1381 gccgctgcgg tgcggctgct tgtcagcgag ttgggtcaga ccccgctgat cggtttcgcc
     1441 ggagcaccgt tcacgctggc gtcctacctg atcgagggcg gtcccagccg caaccatgag
     1501 cacaccaagg cactcatgca cgccgaaccc gccgtctggc acgcgctgct ggaacggctc
     1561 gccgagctca ccctgacgtt tttgcgagtg caggtcgcgg ccggggttga c
//
LOCUS       DASVXZ010000788         2688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1120447, whole genome shotgun sequence.
ACCESSION   DASVXZ010000788 DASVXZ010000000
VERSION     DASVXZ010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1120447"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..1087
                     /locus_tag="VF788_16735"
     CDS             2..1087
                     /locus_tag="VF788_16735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005456957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HEX8935791.1"
                     /translation="MRLQRVDPSGPGYSRRRRGRGFSYHDQDGAPITDPATVARIRAL
                     AIPPAWRDVWICTLPAGHIQAVGTDDAGRRQYRYHDEWRRRQDADKHDRVLRLGRRLP
                     AVRSQIREQLEGRGLGCDRVLAAALRMLDIGVFRVGGEEYAPGPGEDEGSFGLATVRR
                     EHVRLRRGGIELCYPAKGGIERTITLRDPALHAVVRSLLRRQGGGEELLAYRAGHGWR
                     DVSAEDINTRLKELAGNEFSAKDLRTWNATVLAAVALAEGASGGVPTSQRARARAINA
                     ALDEVAEHLGNTRAVAKASYVDPRVLEHYAEGRTILAAVRRAGTLDLTDEDVRTRLEA
                     ALLRLLRAHDRTRPQRDLRDQEALAGD"
     gene            complement(1063..1551)
                     /locus_tag="VF788_16740"
     CDS             complement(1063..1551)
                     /locus_tag="VF788_16740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8935792.1"
                     /translation="MPKTVPCLWFDGQAEQAAAHYTAIFPRSEILGVTRYGPGTPGPE
                     GGVMTVSFSLDGQQYVGLNGGPQFTFTEAISFQVRCADQEEVDYYWERLSEGGEQGPC
                     GWVKDRFGVSWQIEPTVLLELINDPDQDRAQRALQAMLSMGKIEIAELLKAADQSPAS
                     AS"
     gene            1781..>2688
                     /locus_tag="VF788_16745"
     CDS             1781..>2688
                     /locus_tag="VF788_16745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dolichyl-phosphate beta-glucosyltransferase"
                     /protein_id="HEX8935793.1"
                     /translation="MECEVAPDVDPRRWSVGQPATVDVVVPVYNEERALPGCLQVLRS
                     FLDDQLPFAWTITVVDNASTDGVLQVARELAASDDRIRVLHLHRKGRGHALRTAWMCS
                     DADVVVYMDVDLSTGLDALLPLVIPLINGHSDVAIGSRLAPGARTVRSSRREVISRCY
                     NAMIRMTHGARFSDAQCGFKAARTDVIRPLLAHVHDDGWFFDTELLLLAEHNGLRVHE
                     VPVDWVEDVDSRVQVWSTALADARGLARVARAKATGAARVADLPRRAAPRPAHPDAVL
                     ARQDGLTWQLVTFGLVGVVSTVATVVL"
BASE COUNT          424 a          853 c          940 g          471 t
ORIGIN      
        1 ggtgcggttg caacgagttg accccagcgg cccgggatat tcccggcggc gccgtgggcg
       61 cggtttcagc taccacgacc aggacggcgc gcccatcacc gatccggcca ccgtggcgcg
      121 gatccgggcc ctggctatac ctccagcctg gcgcgacgtg tggatctgca cgctgcccgc
      181 gggccacatc caggcggtgg gcaccgatga cgccggtcgg cgccagtacc gctaccacga
      241 cgagtggcga cgccgccaag acgcggacaa gcacgaccgg gtgctgcggc tgggccggcg
      301 actgcctgcg gtgcgctcgc agattcgtga gcagctcgag ggtcgaggtc tgggctgcga
      361 ccgggtgcta gctgcggcgc tgcggatgct cgacatcggc gtgttccggg tcggcggtga
      421 ggagtacgcg ccgggacctg gggaggatga gggcagcttc ggcctggcca ctgtgcgccg
      481 tgagcatgtg cggctgcggc gcggcggcat cgagttgtgc taccccgcga agggtggcat
      541 cgagcggacg atcaccttac gggacccggc gctgcacgct gtggtgcgtt ccttactccg
      601 gcggcagggt ggtggtgagg aactgctggc ctaccgcgcc ggtcacggct ggcgcgatgt
      661 cagcgccgag gacatcaata cccggctcaa ggaactggcc ggcaacgaat tcagcgccaa
      721 ggacctacgc acctggaacg cgacggtgct ggccgcggtg gcgctcgccg aaggcgcctc
      781 cggcggtgta ccgacctcac agcgcgcccg cgcccgggcg atcaacgccg cactggacga
      841 agtcgccgaa catctgggta acacccgcgc agtggccaaa gcctcctacg tggatccgcg
      901 cgtgctggag cactacgccg aaggcagaac gatcctggca gcggtgcgcc gagccgggac
      961 cctcgacctc accgatgagg acgtcagaac ccgcttggag gctgcgctgt tgcgcttgct
     1021 gcgggcgcac gatcgcaccc gtccgcagcg ggatcttcgg gatcaggaag cactggctgg
     1081 ggactgatcc gccgccttca gcagttccgc gatctcgatt ttgcccatgc tgagcatggc
     1141 ctggagggct cgttgtgccc ggtcctggtc ggggtcgttg atcagttcga ggagcacggt
     1201 cggctcgatc tgccatgaga cgccgaaccg gtccttcacc cacccgcacg gcccctgctc
     1261 cccgccctcg gacagccgtt cccagtagta gtcgacctcc tcctggtctg cacagcggac
     1321 ctggaaggag atggcctcgg tgaacgtgaa ctgcggccca ccgttgagcc cgacgtactg
     1381 ctgcccatcg aggctgaagc tgacagtcat cacgccgcct tcgggcccag gtgtcccggg
     1441 accgtaacga gtcaccccga ggatctcaga gcggggaaag atcgcggtgt agtgcgctgc
     1501 tgcctgctct gcctgtccgt caaaccacag acacggaacg gtcttcggca tcggtcatcc
     1561 tctctcgccc gggtcggtcc cggatgaagg aggtgaccgc gcctgcgcgc agaactcatc
     1621 ggtggtgcag aggtcgcgca gagctggccg tcaccgtccg tggtcgtctc ccaggaaact
     1681 atgaggttgt gtgcaggctg ctcacacccc gctgggccat aactagcagc gcaagtttca
     1741 aacggctctt cagggtgagg tgagggtgat ggtggcgacc atggaatgcg aggttgcacc
     1801 cgacgtcgat ccgagacggt ggtcggtggg gcagccggcc acggtggacg tcgtggtgcc
     1861 ggtctacaac gaggaacggg cgcttcctgg ttgcttacag gtcttgcgct cgttcctgga
     1921 tgatcagtta cctttcgcgt ggacgatcac cgtagtcgac aatgccagca ccgatggggt
     1981 cttgcaggtg gcgagggaac tcgccgcctc cgatgatcgg atacgggtac tgcacctcca
     2041 tcgcaagggc cgcggtcacg cgttgcgcac ggcttggatg tgcagcgacg ccgatgtcgt
     2101 cgtctacatg gacgttgacc tgtccaccgg cctggacgcg ttgctgccgc tggtcattcc
     2161 gttgatcaat ggtcactccg atgtcgcgat cggttcgcgg ttggcgcccg gtgcccgcac
     2221 cgtgcgcagc tctcgccgcg aggtgatttc ccggtgttac aacgcgatga tccggatgac
     2281 tcacggtgcc cggttctccg atgcacaatg cggcttcaaa gcggcccgca ccgacgtaat
     2341 ccgtccgttg ctggcccatg tgcacgacga cggctggttt tttgacaccg agctgttact
     2401 gctcgccgaa cacaacgggt tgcgggtgca cgaggtgccg gtggactggg tggaagacgt
     2461 ggacagccga gttcaggtgt ggtccacggc gctcgcggac gctcgagggt tggcacgggt
     2521 ggcgcgggcc aaagctactg gtgcggcgcg ggtggcagat ctgccccggc gggcggcacc
     2581 gcgaccggcg cacccggacg cggtgctcgc gcggcaagac ggattgacct ggcagctggt
     2641 gaccttcgga ttggtcggtg tggtctccac agtggcaact gtggtgct
//
LOCUS       DASVXZ010000789         5174 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1389157, whole genome shotgun sequence.
ACCESSION   DASVXZ010000789 DASVXZ010000000
VERSION     DASVXZ010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5174
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1389157"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..112)
                     /locus_tag="VF788_16750"
                     /pseudo
     CDS             complement(1..112)
                     /locus_tag="VF788_16750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(190..1815)
                     /locus_tag="VF788_16755"
     CDS             complement(190..1815)
                     /locus_tag="VF788_16755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HEX8935794.1"
                     /translation="MRTELVIFTLLFALVAGLGFYAVRWNSRGPLDRLDEWALGGRRF
                     GFWVSFFLNSGEIFTASTFIALPALMFGVGAVGFYLLPFTIFAYSLAFLPLVRLWSVS
                     RANGYVTPADYVVGRYGSTTLGLLVALTAIIATVPYIAVQLAGLEAVLRTIGLNRGGY
                     IGHAPLFVAFVILAAYTYRSGLRAPALIAFVKAMLIYPVIIAAVIILPLNLGGWDSIF
                     NAAHTKFTHPPTGNDILLGADNQLQYITLALGSALAMFLYPHTLTGVFAARDSQVIKR
                     NLVALPAYSLVLGMFGLLGYAAIAAHTEPLVNAATNKPDSNTLVPMLFQGQFPPWFAG
                     IALAAIGIGTLVPASVMSIAAANLWSRNIYKAYLQPDATSEQETTQSKIASLVVKFGA
                     VALLVLLDPQYSLDLQLIAGVIILQTLPMVAIALYTRWFHRWALLAGWVAGMAWGLWM
                     LHSIPNLTTTIAALELGKLSILGWEPFAGSTMQIYPGFLALVGNLVVATVFTLVLRLM
                     GVSNGTDETEPHPHPTLNANQTPMAAGSDPALR"
     gene            complement(1812..2075)
                     /locus_tag="VF788_16760"
     CDS             complement(1812..2075)
                     /locus_tag="VF788_16760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HEX8935795.1"
                     /translation="MPSDVFGHSALRGSSWNLVLLVLLVPLVVLVTPLYNSDEPRLYG
                     FPLFYWLPLLFIPLSVTCVALVYRKTKNICPSVEPDSMQRAQR"
     gene            complement(2205..2597)
                     /locus_tag="VF788_16765"
     CDS             complement(2205..2597)
                     /locus_tag="VF788_16765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935796.1"
                     /translation="MAALLQTVASWPSLLLVIAVFGFAPGFCLRLIVCTYPRDDPRRR
                     ELVAELYAVPRIQRPLWVAQQLEVALFEGLTPRVSAAIRRRRDQRRTRRHDREIQKAR
                     QGDGPVAGAHPRVTEPPEPSPVVFTGVL"
     gene            complement(2603..3016)
                     /locus_tag="VF788_16770"
     CDS             complement(2603..3016)
                     /locus_tag="VF788_16770"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX8935797.1"
                     /translation="MRNTQPLVQVAMALLDEPTGRHWGYELSKKADVRSGVLYPMLTR
                     LLDEGLLADGWEDPTTIQKRRPPRRYYTVTDKGLQKLGAVVQKARSEPRFAHLFTQAS
                     RQRGTGFTPATNCGSIWGSFAPGLGWRVVASPAGR"
     gene            3419..3622
                     /locus_tag="VF788_16775"
     CDS             3419..3622
                     /locus_tag="VF788_16775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935798.1"
                     /translation="MIQQGAVPLPVNPLLPVHDLVAAAAEAGARLALASTDQIHAPAE
                     RDAEPPVLIDGPQEFWAAALRPR"
     gene            complement(4368..4655)
                     /locus_tag="VF788_16780"
     CDS             complement(4368..4655)
                     /locus_tag="VF788_16780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935799.1"
                     /translation="MGHPSRRNLLMDLTDRASTITFLLRDRDSRFTSAFDAVFAADGI
                     RILTNPLGAPRANATVEALQQLVGCYGRSSPYVGAGALGVERSSWLIFVVV"
     gene            complement(4720..>5174)
                     /locus_tag="VF788_16785"
     CDS             complement(4720..>5174)
                     /locus_tag="VF788_16785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935800.1"
                     /translation="ISRVRYTPADRMWLTALSRLLPRRRWAEVFPVTLVTILAWHRQL
                     VSRKWDYTAHRRPGRPPTAAVIEQLIIRMATENPTWGHRRVQGELVRLGHRIAASTVW
                     QTLHDAGIDLAPRRSGLTWRQFSPPSPRPSWPWTSSMSTLWCCEGSTP"
BASE COUNT         1003 a         1605 c         1670 g          896 t
ORIGIN      
        1 ccgcctccac gggcaacggc gtgaagcgct gcacccagcg aaagacgctg acgtggtcga
       61 cctgcactcc gcgctcagcc agcagctctt caacatcgcg atacgacagt cccagtagaa
      121 acggcctcgt ccactccgga cattgcgcgg tacccagggc cgagcgaacc attcctaatg
      181 ctaggtgggc tatcggagcg ctgggtcgga accggctgcc atgggtgtct ggttcgcatt
      241 gagtgtggga tgggggtgtg gctcggtttc gtcggtgccg ttggagactc ccattagtcg
      301 tagcacgagg gtgaataccg tggctaccac gaggttaccg accagcgcga ggaatccggg
      361 atagatttgc atggtcgagc ccgcgaaggg ttcccagccc aggatcgata gcttccccag
      421 ttccagtgcc gcgatggtgg tggtgaggtt ggggatgctg tggagcatcc ataggcccca
      481 ggccatccca gctacccagc cggcgagcag tgcccagcgg tggaaccagc gggtgtagag
      541 cgcgatcgct accatgggca gtgtctgcag gatgatcact ccggcgatga gttgcaggtc
      601 gagggagtat tgcgggtcga gtagcacgag cagggctacc gcgccgaatt tgaccactag
      661 cgaagcgatc ttggactgcg tggtctcctg ttctgatgtc gcgtcgggtt ggagatatgc
      721 cttgtagatg ttgcggctcc acagattcgc cgcagcgatg gacatgaccg aggccgggac
      781 cagtgtgccg atcccgatgg cggctaaggc gattccggcg aaccaggggg ggaactgccc
      841 ttggaaaagc atcgggacca gggtgttgga gtccggttta ttcgtggctg cgttgacgag
      901 cggttctgtg tgcgcggcga tcgcggcgta gccgagcaac ccgaacattc ccagcaccag
      961 cgaatatgcg ggcagggcga cgaggttgcg tttgatcacc tgagagtcgc gcgcggcgaa
     1021 gacaccggtg agggtgtgcg ggtagaggaa catcgccagc gcggagccca gtgccagggt
     1081 gatgtattgc agctggttgt ccgcacccag caggatgtcg ttacccgtcg gtgggtgggt
     1141 gaacttcgta tgcgcggcgt taaagatcga atcccatccg cccaggttca gcggcaagat
     1201 gatcacggcg gcgatgatca ctgggtagat cagcatggct ttgacgaagg cgatcagcgc
     1261 cggggcccgc aggccggagc ggtaggtgta ggccgccagg atcacgaagg cgacgaatag
     1321 tggggcatgc ccgatgtacc cgcccctatt gaggcctatc gtgcgcagca ccgcttccaa
     1381 cccggccagt tgcacggcga tgtagggcac cgtcgcgatg atcgcggtga gcgccacgag
     1441 caacccgagc gtggttgacc cgtagcgccc gacgacgtag tccgccgggg tcacatatcc
     1501 gttcgcccgc gacaccgacc acaaccgcac caggggcagg aacgccagcg agtaagcgaa
     1561 tatggtgaag ggcaacaggt agaaccccac cgctccgaca ccgaacatca gcgcgggcag
     1621 tgcgataaac gtggacgccg taaatatctc gccgctgttg aggaagaagc tcacccaaaa
     1681 gccgaacctg cgacctccca gtgcccattc atccagtcga tccagcgggc ctctgctgtt
     1741 ccaccgcacg gcgtagaagc ccagcccggc gaccagagcg aacagcaggg tgaagatgac
     1801 cagttcagtt ctcatcgctg tgctcgttgc atgctgtctg gctccactga agggcagatg
     1861 ttcttcgtct tccggtacac cagcgccacg caagtcacgc tgagcgggat gaacaaaagc
     1921 ggcagccagt agaacaaagg aaacccgtac agtcggggct cgtcgctgtt gtacaggggt
     1981 gtgaccagca ccaccagcgg caccaggagt accaggagta ccaggttcca gctgctgccg
     2041 cgcagcgccg aatgaccaaa cacatcggac ggcatcttgg gtcctttccg caggtcccac
     2101 tcccgacaac taaaggcgac cgcccggtcg gtctcatcgc ctcgggggcg cctgtactca
     2161 gcactgccgg gacaacgatg gtcagtgccc caggcaaacc ttcctcacaa gaccccggtg
     2221 aacacgacag gacttggctc gggaggttcc gtaacccgcg ggtgagcacc tgccaccggg
     2281 ccgtcaccct gccgggcctt ctggatttct cgatcgtgcc gccgcgttcg acgctgatca
     2341 cgccgccgcc ggatagccgc cgatacgcgg ggggtgaggc cctcgaacag cgctacctcg
     2401 agctgctggg caacccagag cggtcgctgg atgcggggca cggcatacag ttccgcaacc
     2461 agctcgcgcc gacgaggatc gtcgcgagga taggtacaaa cgatcaaccg cagacaaaat
     2521 ccgggggcga acccgaacac ggcgatgacc agcaacaggc tcggccagga cgcgacagtc
     2581 tgcaacagtg cagccatcag gctcacctcc ccgcaggtga ggccacgacc cgccaaccca
     2641 agccgggcgc gaatgagccc cagattgagc cgcagttcgt tgccggagtg aagcccgttc
     2701 cccgttgccg agacgcctgg gtgaacaggt gcgcgaaccg cggttcactg cgggccttct
     2761 gaacaaccgc gccaagcttc tggaggccct tatcggtgac tgtgtagtaa cgccggggcg
     2821 ggcgccgctt ctggatggtg gtcggatcct cccaaccatc cgcaagcaaa ccctcgtcaa
     2881 gcagtcgcgt cagcatcgga tacagcacgc ccgaccgcac gtcagccttc ttagacagct
     2941 cataacccca gtgccgaccg gtgggttcgt ccaagagggc catcgccact tggaccaggg
     3001 gctgtgtgtt acgcacgtca cacatgctag accgacctat gtaggttagc aaccagatct
     3061 acataggtcg gcctggcttc atacttttgg agggacgcca agcgctgtcg agtctcgccc
     3121 gacctcaccc gccgagtcgt tgccgaaact aatggtcacc tctactacgt tggggtcgtg
     3181 gaagccgacg gcgtgtaacc catcgatcgg agtcagacat acgcgacctc gtgtcacacg
     3241 tgaggatttt ctcttctctg gtcaagtgcg gccttcggcc acggccgctg gtcgccgggc
     3301 cggtccggtc ctcgctgcgc tgcgggcggc tggcccggcc gcggcgcaca ctgacggcct
     3361 gatcgggtgc tgatcatgct cccccgacgg tcccggtttc gcggacgcct tcgccggggt
     3421 gatccagcag ggcgcagtcc cactgccggt gaatccgctg ctaccagtac acgacctcgt
     3481 ggcagccgcc gccgaggccg gtgcccgact ggcactggcc tcgacggatc agatccatgc
     3541 accggccgag cgggacgccg agccgccggt cctgatcgat gggccacagg aattctgggc
     3601 agccgcactg cgaccgcgct gatcgaggcg ggcttggaca ggcaccttcc cgacgttgaa
     3661 gtgcgcactg gcaagctgcg accggagagt caccaactca gcggtgaagt acggcccgat
     3721 cggagccaat gatcacacca ccaccggaaa ggagcacgcc gccgtacccg tcggctaccg
     3781 gctgcatcgg gatctgtctt agaacattcg cgatgaggcg agtctaacgt ccgaccccat
     3841 gcacggagaa ggtccgcagg gctccaacgg aggcgcgcgc ctgttgttct cttgattggc
     3901 caccgcgact aatcccggag ccatcgcctc catgactcgg tggatatgct cccattgccc
     3961 gctggacacg gggaacggtc ctgcgaagcg gaacacaccg ccttcgggaa gcaagatagt
     4021 gaattctagg tccaggctca ccgctgttca cctttgttcc gttccctccc ccgaagtagt
     4081 ctgatgtacg ccgttcagtg gaaatccttg gcttcttcgg cgtacccgac tcaagcgcgt
     4141 ctcatacggg atgcaccgct cttttgccta gttgtcacgc agccgtcatc gatcggtcaa
     4201 tctcggttgg ggtcgtgttg caggtcgtgc gcgattgagc tcgttgggtg accagtgacc
     4261 agccccgcca acgccgtgac ctgtgggcac ttgacatctg cttagtgggg ctcaggatcg
     4321 ctaccgaagt actactccac aactaccgca gatattcaat gattatttca gactactacg
     4381 aagatcaacc aactcgaccg ctccacccca agcgcaccgg caccaacata cggcgatgac
     4441 cggccgtagc agcctacgag ctgctgtaat gcctctaccg tagcgttcgc ccggggcgca
     4501 ccaagtggat tagtgaggat ccggatgccg tccgcggcga agaccgcgtc aaacgcactg
     4561 gtaaaccggg agtctcgatc tcggagcagg aacgtgatgg tggaggcgcg gtcggtgagg
     4621 tccatgagca ggttgcggcg gcttgggtgg cccacgcacc ggtcgggtgc gcggtcacgc
     4681 cgagcaggtg tgcccggcgg gaacagtgct cgaccgcgat cagggcgtag atccctcgca
     4741 gcaccacagt gtcgacatgg acgaagtcca cggccaggac ggccttggac tgggcggtga
     4801 gaactggcgc caggtgaggc ctgaccggcg aggtgcgagg tcgatgccgg cgtcgtgcaa
     4861 ggtctgccac acagtggagg cggcgatgcg gtggccgagg cggaccagtt cgccctgcac
     4921 gcgccggtgt ccccaggtgg ggttctcggt tgccatgcga atgatgagct gctcgatcac
     4981 cgctgctgtc gggggacgtc cgggtcggcg atgtgccgtg tagtcccatt tccgcgagac
     5041 aagctggcgg tgccaggcca ggatcgtgac aagagtgact gggaagactt cggcccagcg
     5101 gcggcgcggc aatagccgtg acaaggcggt cagccacatt cggtcggccg gcgtgtagcg
     5161 gacccggctg atct
//
LOCUS       DASVXZ010000790         4034 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_942658, whole genome shotgun sequence.
ACCESSION   DASVXZ010000790 DASVXZ010000000
VERSION     DASVXZ010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_942658"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            353..619
                     /locus_tag="VF788_16790"
     CDS             353..619
                     /locus_tag="VF788_16790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935801.1"
                     /translation="MERECSAAAVMLGLPGFVVLAVSDNDGELEQAVETTADLVGPPE
                     CAAVTQLVPGLGPAQMMIAMSPPSVPFRGNVSNSYEVGHERGTP"
     gene            complement(719..1288)
                     /locus_tag="VF788_16795"
     CDS             complement(719..1288)
                     /locus_tag="VF788_16795"
                     /inference="COORDINATES: protein motif:HMM:NF013752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEX8935802.1"
                     /translation="MAEYRAPTGQNRRYVLPHQHHQELIAELLFVDQSTISRTISDLE
                     EIIAEALDKFVSELPEEIEGRVAIVDGSPCPCWSWADAAQLYSGKHKTTGHAHQFVCD
                     LFGRLMHISDPLPGSTHDAKATHETELSELLRDDNAIGDKGYIGTGITTPYRKPAGGE
                     LLDWQKEFNTAVNKIRYVIERAISHFKTW"
     gene            1345..2415
                     /locus_tag="VF788_16800"
     CDS             1345..2415
                     /locus_tag="VF788_16800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010307294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8935803.1"
                     /translation="MSATLRLVYLIFCQLSAWIALLMRSDASKNAEILVLRHQVNVLR
                     RQVARPRPTWADRALISALARLLPKARRRDLFVTPGTLLRWHTSLIERRWSGECQRCG
                     RPPTSPSLRRVIVRMAAENSGWGYRRITGELADMGRQIGASTVWAILQHAGIDPSPQR
                     SGPTWTEFLRGQAHGILACDFFHCDTVLLTRLYCFAVVEHATRRVHILGVTAHPTADW
                     VTQQARNLLMDLDDLVAQFKFLIRDRDSKFTSMFDAVFTSEGIQIIKTPIWSPRANAI
                     MERWIGSLRRELLNRMLILNARHLRQVLAEYENHFNTHRPHRSLGQAAPLRAFPKPDT
                     TDITVIRRDRLGGAIHEYTQVA"
     gene            3564..>4034
                     /locus_tag="VF788_16805"
     CDS             3564..>4034
                     /locus_tag="VF788_16805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935804.1"
                     /translation="MRVVRESAAAPAGFEVARAVADAVLYEGYLLYPYRRSSGKNRVR
                     WQFGVLVPRTWLEVSGVPDASVAGSADAWHQQTDCLLEARDTATVHVWLRFLQLQHRL
                     VETRCTGGSFQPVDVLDVDGQRYLTFDEAVPREFHVVAEVGELRRAPHTVGIEVP"
BASE COUNT          720 a         1226 c         1253 g          835 t
ORIGIN      
        1 ccactgccat gattaccggc cttcgggccg ttgcgctgag gaatcattgt agtcatccct
       61 tgcccatccg atcacggttt cggcggagca atcgatgacc atggcgtggt agtcacctgc
      121 tagccctgca gtccccacag gggtgaatga gactactagg gcgtcttcgt ggagtggttc
      181 ctcggaggcc ggcattttcg ctgcgacgac cgatccacac ctcccggaaa cctggctctt
      241 cgtctctgag cgtggtgtgc cactgtagga cacgatcttt agcctggacc tgaacatagg
      301 cttggggcct caagatccgt ggtgttcatg gacacggaga tggaggcccc aggtggaacg
      361 agagtgtagt gcggcggcgg tgatgctggg cttgcccggg tttgttgtgc tggctgtgtc
      421 ggacaacgat ggtgagctgg agcaggcggt ggagaccacg gcggatctgg tgggccctcc
      481 ggagtgcgcg gcggtgaccc agctggtgcc ggggctgggc ccagcgcaga tgatgattgc
      541 catgtcaccg ccaagcgttc ccttccgagg aaacgtgagc aattcgtacg aagtcggcca
      601 cgaaagagga acaccttgag gcttatgcga aacgcagttt gaagaagtgg agtgctcgga
      661 cggcgttgaa cgctgtggcg taggtgcgtt tgggtctgcg gtagtcggtg tgcatgcatc
      721 accacgtttt gaagtgagag attgcgcgtt cgatcacgta acgaatcttg ttgaccgcag
      781 tgttgaattc tttctgccag tcgaggagtt ctccgccggc tggcttgcga tacggggtgg
      841 tgatgccggt tccgatgtaa cctttatcgc cgatggcgtt gtcatcgcgg agaagttcac
      901 tgagctcggt ctcgtgcgtt gctttggcgt cgtgcgtgct gccgggcagc gggtccgaga
      961 tgtgcatcag gcgcccgaag agatcgcaga cgaactggtg ggcgtggcct gtagtcttgt
     1021 gcttgcccga gtacagctgg gccgcatcgg cccacgacca gcacggacac ggcgatccgt
     1081 caacgatggc gactcggccc tcgatctcct cgggcagctc agagacaaat ttgtcgagcg
     1141 cctccgcgat aatttcctca agatcgctga tcgttctgga gatcgtggat tgatcgacga
     1201 acagcagttc ggcgatcaat tcttggtgat gttggtgcgg aagtacataa cggcggtttt
     1261 gacctgtcgg tgcccgatac tcggccaccg cgctgactgg ggtgatatca gttcagttca
     1321 gttcggttcg cttcggcatg gtccgtgtcc gcgacgttgc ggctggtata cctgatcttc
     1381 tgtcagctca gcgcctggat agcgctactc atgcgatcgg acgcatccaa gaacgcggag
     1441 atcctggtgc tacgccacca ggtgaacgtc ttacgtcggc aagtcgcacg tcctcggccg
     1501 acctgggcag accgcgccct catcagcgcg ctggcccggc tactgcccaa ggcacgtcgc
     1561 cgggacctgt tcgtcactcc cggcacactc ttgcgctggc acaccagctt gatcgaacga
     1621 cgatggagcg gcgagtgcca gaggtgcgga cgcccaccca cctcaccgtc actgcgcagg
     1681 gtgattgtgc gcatggcagc cgagaactca ggctggggct accgacgcat caccggagaa
     1741 ctcgccgaca tgggccgtca gatcggcgcc tccacggtct gggcgattct ccaacacgcc
     1801 ggtatagatc cgtccccgca acgctcgggt cccacctgga ccgaatttct gcgcggccaa
     1861 gcacacggaa ttctcgcctg cgacttcttc cactgtgaca ccgtgctcct caccaggctg
     1921 tactgcttcg cggtcgtcga gcacgccacc cgccgagtac acatcctcgg tgtcaccgca
     1981 catcccaccg cagactgggt cacccagcaa gcccgcaacc tgctcatgga cctcgacgat
     2041 cttgttgcgc agttcaagtt cctgattcgc gaccgggatt cgaagttcac cagcatgttc
     2101 gacgcagtct tcaccagcga gggcatccag atcatcaaga ccccgatctg gtcaccccga
     2161 gcaaacgcga tcatggaacg ctggataggc agtctccgtc gagaactcct caaccgaatg
     2221 ctcatcctca acgcccgaca cctacgccaa gtcctcgccg agtacgaaaa ccacttcaac
     2281 acccatcgac cacacagatc tctcggtcaa gctgccccgc tacgagcatt ccccaagccc
     2341 gacaccaccg atatcactgt catccgacgt gaccgacttg gcggagccat ccacgaatat
     2401 acacaggtcg cgtagggtag ctgactttca ggcacccaca gggcgcaccg ctgactggct
     2461 gggacttcac cgaaccaact gtccagggtt acctacagga tcccgatctg aatctatcct
     2521 caaaagctgt actcggactt gcttggcgcc atcaggtgac cattctgcaa cgccattgac
     2581 ttaaatgttt taaactgtaa ttggcgcttg atgtcctggt gccactcatg gcgtacgatc
     2641 ggaagtcgac attatcggca ccccgctgtg tgcgcaggcg ctggcgcttg cggtgccaag
     2701 cgatccatct gaggaaccac gtgtggaaca tcgggctctg cgtcggggtg ccgtcgttgc
     2761 cgttcgccgt aggcggcgag gacgtccctg tgttgctgcg ttgtcgcatt ttttgccgtg
     2821 cctgccacca tggcgcctat ggcgtttcgc tgccggacag actgcgatca tcattcccgt
     2881 tggtgctgcc gagcccatcg ttgggcgctg gcgcaggcaa ctcgatccgg ccgcggctgc
     2941 gggcgtcccg gccacgtcac gatcatttat ccttcctgcc ggagcaggcg gcgcccggtt
     3001 cgctgccgcc aggggactca aggcctacgc ggttccccca gtgaccagag ccccccgccg
     3061 cagcatctct acaacccgcc gcagggtgat aaaccggctg gctgcggccg gcttcatctg
     3121 agccctcatg ccatgaccaa ctctccgccc gcactcgcct cccgccgagc gaaccacgac
     3181 ccagcgcaag gctgccagta atggccacct accacctatg cccttgattc gaccacatgc
     3241 tcggacagct cgaccactgc ctccaaaccg gccagaccta ccacgaacca agaccttccc
     3301 caccgagccg gtcacagctt gaccggcagt tcgaggctga gccgacgggg tgtggagtga
     3361 tgtgcatcac agcaatagat gtaattgcgc aatcgttgcg tgtacgattg tatcgtggag
     3421 cgatcagggc cgggaatgga ttctctgatc cggagataga tgggtggtgc cgtgccggtg
     3481 gcagcagccg accctcgtat gcagggcgcg gtctgatggc ggcggatcag cgtggtggtc
     3541 cgggggttgg gtccggacga tcggtgcgtg ttgtcaggga gtctgcggcc gcgccggcgg
     3601 gttttgaggt ggctcgcgcg gtagccgatg cggtgcttta tgaggggtat ttgctgtatc
     3661 cgtatcgtcg gtcgtcgggc aagaaccggg tgcgctggca gttcggtgtc cttgtacctc
     3721 gtacgtggct ggaggtgtcc ggggttcctg acgcgagcgt ggcagggtca gcggatgcct
     3781 ggcatcagca aaccgattgt ctgctggagg cgagggacac cgccacggtg catgtgtggc
     3841 tgcggttttt gcagctgcag caccggttgg tcgagacccg gtgtacgggt gggagcttcc
     3901 agccggtcga cgtgctggac gtcgacgggc agcgttactt gacctttgac gaggccgttc
     3961 ctcgggagtt ccacgtcgtc gcggaggtgg gcgagctgcg tcgcgctccg cacacggtgg
     4021 gcattgaggt gccc
//
LOCUS       DASVXZ010000791         2157 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1659599, whole genome shotgun sequence.
ACCESSION   DASVXZ010000791 DASVXZ010000000
VERSION     DASVXZ010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1659599"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            607..801
                     /locus_tag="VF788_16810"
     CDS             607..801
                     /locus_tag="VF788_16810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935805.1"
                     /translation="MSPAGRAAVGDAVMEIEALAALLAEVVKLAGDRAVFPGRWAHIA
                     ELAMGHNSVRRALLAVGSGS"
     gene            1045..1380
                     /locus_tag="VF788_16815"
     CDS             1045..1380
                     /locus_tag="VF788_16815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935806.1"
                     /translation="MALRLLYLLFLHLLNLLMLLGRSSASKDIELLVLRHEVAVLHTS
                     RHRMISRMGRRARQESVCPKEHDREQPPLAVSPANKRSGSCGRATVAAWATGVLAVTV
                     VFLDRKRRQ"
     gene            complement(1374..1712)
                     /locus_tag="VF788_16820"
     CDS             complement(1374..1712)
                     /locus_tag="VF788_16820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935807.1"
                     /translation="MDDFNVRVRSASSSLTEADLPSTASGTAHCRLAPLAWKGNVMAA
                     PNIGHSVIRIVNIFVVVILILILLNLLGHPISNAIPSAAQNVRDMLAALWNGIKDLVP
                     HNWDNYYYHH"
BASE COUNT          385 a          611 c          730 g          431 t
ORIGIN      
        1 cccttcggag gtctaccaac cgaggttccg aaggcccgcg tccggcgctc agaggtcact
       61 ttgctcgacg cgctcatgga gtcgctgcca tccccgtaag cgaacgtgca caggggacat
      121 cagacgtccg tgcaaacgac cccggacatt gatacccaga ccccctacgt ttccccaacg
      181 ttgacgggcg ccaggtggac gagatggcac gtgcgcgttc acggcttgtg catggccctg
      241 cgtgatgtca gcggctctgc tggtggggac tagcgcgatc gggagcggcc agactagagg
      301 cgggaccttc tgtcggctgg atgcgctcgg tgtgatggtg gtgcagcgaa caccggctct
      361 tggcgaggga atccccatgg caggacgaca cagcaagcgc ccgggcgtgg gcgttgggat
      421 acccgggcag cgcgggatgc gctcccttgg ggtcatcgat gcgcggactc atgttgagca
      481 cctggtgtcg gagcaatcgg ccgcagcgca tcgccatgcg ggttgctacg tcgcggaatg
      541 cggggccgtg gtgctggcgg caagtttgac tgagccgggg cggggccgct gcccggagtg
      601 tgtgtggtga gcccggctgg ccgggctgcg gttggtgatg ccgtgatgga gattgaggcg
      661 ttagcggcac tgctggctga ggtggtcaag ttggccggag accgtgcggt gtttcctggc
      721 cgttgggccc atatcgctga gctggccatg gggcataaca gtgtgcggcg ggcgctgctg
      781 gcggtaggca gcggatcgtg agttgctgcg tcgattgtgc tggtcagcga ggctcgcggt
      841 gcttaaggct gcacaaacag ggtgtggtga ccagccggcg caccaccgag cttcgggtgc
      901 atgtcgatgg tgaggatcag atgatcagca tccgggcgca ctcggtgtgg gttcgtccgg
      961 gattgccaca gacccctgtg gggttgcaaa agtcgacttg accggtgatc tgggtgttca
     1021 gctctcaagg catgatcttg cgctgtggcg ttgcgtctgc tctacctgct cttcctccac
     1081 cttctgaatc tgttgatgtt gctgggccgc tcgtcggcgt ctaaagacat cgaacttctg
     1141 gtgctgcgcc atgaagtcgc cgtgctgcat acgtcgcgac atcgcatgat cagccgaatg
     1201 gggcgtcgtg cccgccagga gtcggtgtgc ccaaaggaac acgaccgcga acagccgccc
     1261 ctggctgtca gtcctgctaa caaacggtca ggaagttgtg gccgtgccac tgtcgcggcg
     1321 tgggcgaccg gggtgctggc ggtaaccgtg gtgttcctcg accgtaagcg gcgtcaatga
     1381 tgataatagt aattgtccca attatggggg acgagatcct taatgccatt ccataacgcg
     1441 gcgagcatgt ctcgcacgtt ttgcgcagcg ctggggatcg cgttggaaat cgggtggccc
     1501 aacaagttca acagaatgag aatcaagatc acgaccacga agatgttcac gattctgatg
     1561 accgaatgac cgatgttcgg tgccgccatc acgttccctt tccatgccag tggtgcgagc
     1621 cgacagtgcg cagttcccga ggccgtgctt ggtaggtccg cctcggtcag tgacgacgag
     1681 gccgaccgca cgcgcacatt aaagtcatcc atctccgccc ggtttcacgc aacacggggc
     1741 gtgacgaggg cggctgctgg atcgctgtgg gtaatcaccg ggcacagcgt acggtgtgcg
     1801 tccaaatcct cacagagcgc caccgagtcg ctcgcgcaga cggatcatcg ttcgctacca
     1861 gtagcccacc atgggttggt ccgggcagac cacctctagc cggtcctgat gatggttgcg
     1921 gttcgcacac cgacacagtt gccacgacaa ccgcgcaggt cgcggacggt gatggaccta
     1981 acgtgtcagc ataagaacca gacgctgcta gtcgaggggc cggagatcaa gatccgtcca
     2041 gtcggtaccc gtcgcgtgac gggtggtcct tggtgaaccc cactacgatc atcgctgggt
     2101 tgacgccgtg caagctatgg agctggtctg cgacgttact cattgaaaat caagggc
//
LOCUS       DASVXZ010000792         4010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_584001, whole genome shotgun sequence.
ACCESSION   DASVXZ010000792 DASVXZ010000000
VERSION     DASVXZ010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4010
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584001"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VF788_16825"
     CDS             <1..501
                     /locus_tag="VF788_16825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007029725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acVLRF1 family peptidyl-tRNA hydrolase"
                     /protein_id="HEX8935808.1"
                     /translation="PVPFGPISTQFGQHAGLVVNDLVNHLMMPRTIGLLLVRLGGYSV
                     GIARGGVVLTSSTGSRLVHGRSAAGGQSQQRFARRREGQARMALRAAADTAARVLLPS
                     AAALDAVFLGGDRAALRTLVTDPRLTALLERADPRVLDIGEPRRAVLDETARRARCVE
                     VHLASH"
     gene            673..2298
                     /locus_tag="VF788_16830"
     CDS             673..2298
                     /locus_tag="VF788_16830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEX8935809.1"
                     /translation="MITVTDLELRAGSRTLLSGATVRVQPGDRIGLVGRNGAGKTSTL
                     RVLAGQSLPYSGQVRHSGELGYLPQDPREGDLSISARDRVLSARGLDQLLHEMEKSQS
                     EMAELVDRDEQSRAVRRYSYLEDRFSALGGYAAESEAARICASLGLPDRVLTQPLRTL
                     SGGQRRRVELARILFGASDGSGGRSNTTLLLDEPTNHLDADSITWLRDFLTAHDGGLI
                     VISHDTELLAAVVNKIWFLDAIRSEIDVYNLGWQRYLDARAADEKRRRRERANAEKKA
                     TALMAQADRMRAKATKAVAAQNMQRRAARLLAGAETEQRAERVAKIRFPQPAACGRTP
                     LTASGLGKSYGSLEVFSGVDLAVDRGTRVVILGLNGAGKTTLLRLLGGMETPDAGQVE
                     PGHGLRVGYFAQEHDTLDLDATVWENLRHAAPDAPEQQLRTLLGAFLFRGEQLDQLAS
                     SLSGGEKTRLALAALVSSAANVLLLDEPTNNLDPVSRERVLDALRHYAGAVVLVTHDP
                     GAVQALSPERVIVLPEGTEDHWDADYLDLVQLA"
     gene            2481..2717
                     /locus_tag="VF788_16835"
     CDS             2481..2717
                     /locus_tag="VF788_16835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019812435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935810.1"
                     /translation="MASEERRFEVADLKKGSRITGVARDKLASELKKKYEKGASIRAL
                     AESTGRSYGFVHRVLSESGVTLRGRGGATRTKKK"
     gene            3099..4010
                     /locus_tag="VF788_16840"
                     /pseudo
     CDS             3099..4010
                     /locus_tag="VF788_16840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016333478.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
BASE COUNT          682 a         1247 c         1381 g          700 t
ORIGIN      
        1 ccagtgccgt tcggtccgat ctcgacgcag ttcggtcagc acgcaggtct ggtggtgaac
       61 gacctggtca accacctcat gatgccgcgc acgatcgggt tgctgctggt gcgtctgggc
      121 ggctatagcg tgggtatcgc ccgcgggggc gtggtgctca cctccagcac cggcagccga
      181 ctggtgcacg gtcgttccgc ggcgggcggc caatcccagc agcgttttgc ccggcgccgg
      241 gagggtcaag cgcgcatggc acttcgcgct gcggcggaca ccgcggctcg ggtactgctg
      301 ccaagtgccg cagcgctgga cgccgtcttc ctcggcgggg atagggccgc tctccgcact
      361 ttggttaccg acccacggtt aaccgcgtta ctggagcgcg ccgatccacg ggtgctggac
      421 atcggcgaac cgcgccgtgc agtccttgac gaaaccgcgc gcagggcgcg ctgcgtcgag
      481 gtccacctcg cctcgcactg acggggccgg tgacagcgac aaccatccat gtggttgtca
      541 ccggactgcc ctggtgcggt ggccgggtag tatgggcccg tggtcgcgac aagttgatgt
      601 gctgctggcc cccgtgcact gcggcgtggg ggaacttatc cctgccagcg accaccgttg
      661 gagtcagctc acgtgatcac agtcactgac cttgaactgc gcgctgggtc ccggaccctg
      721 ctctcaggag caactgtgcg ggtgcagccc ggcgaccgga tcggcctggt cgggcgcaat
      781 ggcgctggta agacgagcac gctgcgagtg ctggcgggcc agtcgctgcc ttactccggc
      841 caggtccgcc acagcgggga attgggctac ctacctcagg atccccgcga gggcgatctg
      901 tcaatttctg ccagggaccg agtgctatcg gcgcggggac tggatcagct gttgcatgag
      961 atggagaaat ctcagtcgga gatggccgaa ctggtcgacc gcgacgagca gagccgtgcc
     1021 gtgcgccgct acagctacct ggaagaccgg ttttccgcgt tgggtggcta cgctgcggag
     1081 agcgaggcgg cgcggatctg cgccagccta gggctacctg accgggtgct gacgcagcca
     1141 ttgcgcacac tctccggtgg ccagcgccgc cgggtcgagc tggcccggat cctgttcggc
     1201 gcctcggacg gctcgggcgg ccgctcgaac accacgctgc tgctcgacga gccgaccaat
     1261 cacctcgacg ccgattccat cacctggttg cgggatttcc tcaccgcgca cgatggtggg
     1321 ctgatcgtga tcagccacga cacagagctg ttagccgccg tggtgaacaa gatctggttc
     1381 ctcgacgcga tacgcagcga gatcgacgtc tacaacttgg gttggcagcg ctacctggac
     1441 gcccgggcag ctgacgagaa gcggcggcgt cgggaacggg ccaatgcgga gaagaaggcc
     1501 actgcgctca tggcgcaggc cgaccggatg cgggccaagg ccaccaaggc cgtcgccgcg
     1561 cagaacatgc agcgacgggc cgccaggttg ctggccggtg ctgagaccga gcaacgcgcc
     1621 gagcgggtgg ccaagatccg ctttccgcaa cctgccgctt gcgggcgaac cccgcttacc
     1681 gctagcggac tgggcaagtc ctacggctcc ctggaggtct tcagcggggt ggacctggca
     1741 gtcgaccggg gtacgagagt ggtgatcctc gggctcaacg gcgcaggaaa aaccacccta
     1801 ctgcgcttgc tcggcggcat ggagactcca gatgccggcc aggtcgagcc cgggcacggt
     1861 ctgcgagtgg ggtacttcgc ccaggagcac gacacactcg atctcgatgc cacagtgtgg
     1921 gaaaaccttc ggcatgccgc gccggacgcc cctgagcagc agctacgcac tctgctgggc
     1981 gctttcctgt tccgcggcga gcaattggat cagctggcaa gctctttgtc cgggggggag
     2041 aagaccaggt tggcgctggc cgcactggtg tcctccgcag ccaacgtgct cttgctggac
     2101 gaaccgacca acaatctcga cccggtgtcc cgggaacggg tcctcgatgc gctgcgccac
     2161 tacgcgggcg ccgtggtact cgtgacgcac gatcccggag cagtgcaggc cctaagccct
     2221 gagcgggtga tcgtgctgcc ggaaggcact gaggaccact gggatgcgga ttacctcgat
     2281 ctggtccagc tcgcctaatc ggcgaccaac cagttactta gggtagtcac ccgctgggtt
     2341 ggtagtggta tttgtccttt ttgccgctat attacgcatc tgggcccgct gcgggtaccg
     2401 ctcacagatc cacccggaga tcgtctagcg gagatcgcta acgtggtcga tcattgccgc
     2461 aagggccgtg accggctctt ctggcgtcgg aagaaaggcg tttcgaggtg gccgacctga
     2521 aaaaaggcag ccggatcacc ggtgtggctc gggacaagct tgcatcggag ctgaagaaga
     2581 agtacgagaa gggagccagc atccgagcgc tcgctgagtc gaccgggcgg tcctacggct
     2641 tcgtccatcg tgtcctctca gagtccggtg tgacgctgcg tggtcgcggc ggcgcaaccc
     2701 gtaccaagaa gaagtagacc tctcagcgtc atcgttgctc ctgacggctg ttgacgcagg
     2761 gatgcgaaac cacacgcggg tgtggtaagg accgatgtcg tgcggcgagc aggacacgct
     2821 ggtcagcgtc gttatcggcg gccagcacct tctcggacag cgcgcaatgc ggggtgttca
     2881 gctcgtccgt tgccgtttga cggcggcgga tcaccccagt gccgaagaac ccatctgtgc
     2941 gccggttcgc tggttacgtt gagccgctgg aggggctgtc gctggaggcc cacggtgctg
     3001 gctgtgacgc gtgccactta ccggtataag cggatggtcg cgggaaagcc ggatgcagag
     3061 ggcccagcgg ggcgcatccg gggactcaag aagataccgt ggccacatcg actgtttccg
     3121 actttttact gaaccgcttg cgcgagtggg aagtggatac ggtcttcggc tatcccggtg
     3181 acgggatcaa tggcttgccg gcggcctggg gacgggccga caaccgaccg cagttcgtgc
     3241 agggcccgcc acgaggagat ggcggcgttc gaggcggtgg ggtacgcgaa gttcaccgag
     3301 cggctgggag tctgcgcagc gacctccgga cctggcgcga ttcacctgct caatggtctc
     3361 tacgacgcca agctcgacca cgtgccggtg ctggcgatcg tcaggcagac caatcgcagc
     3421 gcgatgggcg gctcctacca gcaggaagtc gacctgctga gcttgttcaa ggacgtggcc
     3481 agtgactacg tgcagatggt cactgtgccc gaacagttcc ctcatgtgct ggaccgagcg
     3541 gcccgcacgg cgctggctcg ccgggccccg accgcgatta tcctgccggc cgacgtgcag
     3601 gagctcgatt actcggcacc gacccatgcg ttcaagatgg tgccctcagc ctgggaacca
     3661 gctggcccga actcgcatcg gactccgacg cgctgcggca ggcggcggaa attctcaata
     3721 gcggtcgcag ggtcgcgatc ctgaccggtt ccggggcccg gggtgctgag ctggagcagg
     3781 gtcgcggacc tgctcggcgc gggagtggaa ggcgctactg ggcaaggatg tgctgtccga
     3841 cgagctgccg tatgtgaccg gctcgatcgg actgctgggg acgcgcccaa gttacgagat
     3901 gatgcgcaga gccggcacgc tgttcactgt cggatcgagt tttccctata cccagttcat
     3961 gccggagttt gaccaagcgc gggcggtgca gatcgacctc gatccggcaa
//
LOCUS       DASVXZ010000793         2035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1479761, whole genome shotgun sequence.
ACCESSION   DASVXZ010000793 DASVXZ010000000
VERSION     DASVXZ010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1479761"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1449..1595
                     /locus_tag="VF788_16845"
     CDS             1449..1595
                     /locus_tag="VF788_16845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935811.1"
                     /translation="MFQLLYLIALRLFGWLGLLARSAAAKDVEIFILRHKIAVLRRQV
                     PGLA"
     gene            1616..>2035
                     /locus_tag="VF788_16850"
     CDS             1616..>2035
                     /locus_tag="VF788_16850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935812.1"
                     /translation="MSAPTRLLPRGLRTHRIVTPATLLARHRRLVTRKWIYPHRSGRP
                     PIGDEIKALVLRRARENPSWGYHRIQGELVGLGHRVGAGTIRRILAAARLGPAPRRAD
                     TRWRSFLRAQATGLLATDFFTLDTITLRRIYVLFIMEI"
BASE COUNT          392 a          674 c          627 g          342 t
ORIGIN      
        1 gccgccactg acgcggcgtc ctgaccgacc cggcggcaga tctcggcgcg ggcccgctcg
       61 gtcagcgacg cccgcggcgc gatcaccggc gaggtctcag tccaagttcg cttcacgcac
      121 gccgaatgcg ggcagcgcca cacccgcttg acccacacca gcgtcaccgg ccgtcctcca
      181 gcaggcaggt cgcgcaccac gtcggacgcc gatcatgcag ctcggccacc gccccacatt
      241 ccggacagcc caccagatcg ccgtggtctc caccgcctgc tcgcactcac catcgttgtc
      301 cgacgcagcc agcacaacga acccgggcaa gcccaacatc gccgccgcag cactacgctc
      361 tcgttccaac tgcggcctcc atctccgtgt ccatgaacac cacggatcat gagaccccag
      421 ccccacattc agacccaggc taaagatcgt gtcctacagc agcgcaccac gcagagacga
      481 agagccggtt taccggtggt cttcaggggg tagatcaacg gaagcgatca agcttgtaat
      541 taggaggagg ctggaatggc tgaggcatcg gagaggcaca cgacgcagga tatgggttcc
      601 gggacagccg gagagccagg tgttgcctat gacaccgaca ggctaggaga gcccgggcag
      661 ggagtcccca cgaaagacca gtaccccacc aacgaacgag acaacatctc tgagggtggt
      721 cacggaggcg tcggcattga tgaccctccg ggaacccacc cagtcggcga gtccgtttcc
      781 tccgaaccgg agcctacaga ggcggcgacc cggcagggtg gaacgcttgg cgaactaacc
      841 gaggacgtca gcacttcgga gaaggcttcg gctactacca ggcacatggc cccctctgat
      901 cctgatgacc catacagcca tgaggatgcg gaccaggcgc gatcggaaag acacagctga
      961 gggtaactcg gggagcgaaa ggcttgccgg cggcaggtcg gctgaccata tcgtctgcgg
     1021 gcaggtcgcg cgcgtaggca ttcgcatagg tgtgataggt gaggttccaa gccgcgcaga
     1081 ccacccgggc cgagattagt caatcagtgg ctatgggtgg tctacgcggt cgcatgcagt
     1141 ggcgtggcgt ggtgggcacc cccatccagt gacggtttgt gctggctgac ctaagtctgg
     1201 cgtgattcag attccagcgc acagtgccag taggtgttgc agttggggct gtgtgggttg
     1261 ccgacccacc agttaagaag atggtggcgg agctacgcgc cggtgacaga ttgttgccgc
     1321 cgatgatggc gccgttggcg gtgccgatgt ttgcaacgtg agaggtgtgg cgtgccaaaa
     1381 ctcgttacaa gtgtgatgag ctgcggcttc ggcgacccca cccgatcatg acatgatcac
     1441 cggtcgtgtt gttccaactg ctgtatctga tcgcactcag gctgtttggc tggctcggac
     1501 tgctcgcccg cagcgcggcc gccaaggatg tcgagatctt catcctgcgt cataaaatcg
     1561 cggtgctgcg tcgtcaggta cccggcctcg cctgagctgg ccagaccgag cgatcttgtc
     1621 cgccccgacc cgcttgctcc cccgcggact gcggacccat cgaatcgtca ctcctgccac
     1681 actgctggcc cggcaccgcc gcctggtcac caggaaatgg atttatcctc accgctcagg
     1741 ccgcccaccg attggcgacg agatcaaggc cctggtgctg cgccgggcac gggagaaccc
     1801 ttcctggggc taccaccgga tccaaggcga actcgtcggt ctcgggcatc gcgtaggtgc
     1861 cggcacgatt cggcggatcc tggccgccgc tcgactcggc ccagcaccac gccgggccga
     1921 caccaggtgg cggagcttcc tgcgcgctca ggccaccgga ctgctggcca ccgacttctt
     1981 caccctcgac accatcacgc tgcgcagaat ctacgtcctg ttcatcatgg agatc
//
LOCUS       DASVXZ010000794         4475 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_943352, whole genome shotgun sequence.
ACCESSION   DASVXZ010000794 DASVXZ010000000
VERSION     DASVXZ010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4475
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_943352"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(320..970)
                     /locus_tag="VF788_16855"
     CDS             complement(320..970)
                     /locus_tag="VF788_16855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004562230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX8935813.1"
                     /translation="MVDGVKRRYDSTRRQQQARENRRRILAAAHALFVDKGYGSTTIS
                     EIAHAAGVAVETVYATFRNKPTLLHRAWDIAVGGDEQDVHVLERPEMRAVLGESDLFA
                     RFTRFATVNTAIMRRTARLRLAIQAAADTDPAAAVLMVEIDRARLEAMSVHAQAAVAT
                     GRLAVPEEECRDVLFATTDGSLWHNLVERRGWSDERYAAWLGRFWLATLIDPYRTG"
     gene            1023..1460
                     /locus_tag="VF788_16860"
     CDS             1023..1460
                     /locus_tag="VF788_16860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004562231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8935814.1"
                     /translation="MISEVEEFLGGMLPRQLATEHALCRGDAGPRSGTWSQHDPVTLF
                     GAAVPIRRGWDEVSSTFRWLASRFSDLRDYEFELIAADASEDLAYTVGFEHKTVVADG
                     EPVTYTLRVTHVYRREDGLWKIVHRHGDRVNHDPGAREHRPAP"
     gene            1825..2025
                     /locus_tag="VF788_16865"
     CDS             1825..2025
                     /locus_tag="VF788_16865"
                     /inference="COORDINATES: protein motif:HMM:NF014814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935815.1"
                     /translation="MARAKGRLRGRQPKLSPKQQTELRRMHATGDYSITDLADLLSVS
                     RPTVYRTLQAKQTAAPARSPVS"
     gene            complement(2111..2230)
                     /locus_tag="VF788_16870"
                     /pseudo
     CDS             complement(2111..2230)
                     /locus_tag="VF788_16870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011689228.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(2408..3577)
                     /locus_tag="VF788_16875"
     CDS             complement(2408..3577)
                     /locus_tag="VF788_16875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009077431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0140737 - encapsulin nanocompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 2 encapsulin nanocompartment cargo
                     protein terpene cyclase"
                     /protein_id="HEX8935816.1"
                     /translation="MTDIIPTAEAISLIGPPSHRDCPVLPGPESALVAAVRAGPSGLG
                     TSAARLARELTLRSGPDPAYLERSWGDGTAPPLYVPVVERVDDALGAEVDDRLVLWAK
                     DCGFTDDQADLMRRAGFGRLAMLAHTDTDDPDRLLIAAQLNAAWWAADDLYADDSEMG
                     ATPTELPPRLALVMAAMDPVAPAGEFSIPLDQALRSDPVLVALSSGIEHLTRHASPAQ
                     VQRACYATFAMFVSWNSYAAWRFTGTYPPAWEYLAARQHDSFYTSMTLIDTVGGYELD
                     ANLYYEPRVRRALMQAGTASVMVNDLVSAAKDAADDKPVCNMVLQITADRQCSVEEAI
                     AITVDLHNNLVRDFEATHRSLFPVPSPQLQRFLHGVRAWMGGGFEWHTTNPRYRS"
     gene            3998..4213
                     /locus_tag="VF788_16880"
     CDS             3998..4213
                     /locus_tag="VF788_16880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935817.1"
                     /translation="MKLCARVHAVNEATAEAEKVIWPPILGLFTSVVVTLTYLRRSRV
                     QAEIGESYEVSRSRSAVPLRPCLDHSR"
BASE COUNT          787 a         1464 c         1454 g          770 t
ORIGIN      
        1 cacttgcgca tcgtcacctc ccacgatgag accctaacga cggttgatcg tgcggcccac
       61 cagagggcat tgatgcccct aacttgttga tgccaagccc acgtcacccg atccgatctg
      121 gccacctcgg cgagtgcatc catcagctcc gcgcgcggcg gaaactcggt ggcggtatcg
      181 ccacaatccg tgatccttac cgtccccacc attagcacta gggactcgac ttaccgatcg
      241 acgccggcaa tgtccgtccg acaaggaacg gctaacgaac attacttgcg gccgttcagg
      301 actctcacct caagtttgat catcctgttc gatagggatc gataagcgtt gcgagccaga
      361 agcggccgag ccaggccgcg tagcgctcgt cggaccagcc ccgccgctcg acgaggttat
      421 gccagagcga cccgtcagtc gtggcaaaca ggacgtcgcg gcattcctcc tccggcacag
      481 ccagccgccc ggtagccacg gcagcttgag cgtgcacact catcgcttcg agccgcgcgc
      541 ggtcgatctc caccatgagc actgccgccg ccgggtcggt gtcggcggcg gcctgtatgg
      601 ccaggcgtaa ccgggccgta cgccgcatga tcgccgtgtt gacggtggcg aaccgcgtga
      661 atcgggcaaa gagatcggac tcgccgagca ccgcgcgcat ctcgggtcgc tcgaggacgt
      721 gtacgtcctg ctcgtcgcca ccgacggcga tgtcccacgc gcggtgcagc agtgtgggct
      781 tgttgcggaa ggttgcatac accgtctcca cggcgacccc cgcagcatgg gcgatctcag
      841 agatcgtcgt gctgccatag cccttgtcca cgaacagcgc atgcgcggcc gcgaggatcc
      901 gacggcggtt ctcccgcgcc tgctgctggc gccgggtcga gtcgtagcgc ctcttgacac
      961 cgtcgaccat taaatacacc ctaactgtat tcgatccagc aatactgtat tggagtctgg
     1021 ccatgatatc cgaggttgag gagttcctgg gcgggatgct gccgcggcaa ctggcgaccg
     1081 aacacgcgct gtgtcgcggc gacgccgggc cccgctcggg aacgtggtcc caacacgacc
     1141 cagtgaccct gttcggtgcc gcagtgccaa tccgacgcgg ttgggacgag gtgagcagca
     1201 ctttccgctg gctcgccagc cgcttctccg acctgcgcga ttatgaattc gaactcatcg
     1261 ccgccgacgc gagcgaagac ctcgcgtaca ccgtgggctt cgagcacaaa accgtcgtcg
     1321 ccgacggcga accggtgacc tatacgctgc gggtcaccca cgtctaccga cgcgaggacg
     1381 ggctgtggaa gatcgtccac cggcacggcg accgcgttaa ccacgacccg ggcgcccggg
     1441 agcaccggcc agcaccgtga tctgtcgcgt ccgttccttc gatgagcaca acatcatgac
     1501 ccagcaaaac aagagcccca taaccgaggg gcctgccccg ttcaccctcg gtcccagcgg
     1561 tgggcggcgg ttcgccctgc cgacccgcgg ccgcggcccg tcaagcgcgg ggccaccgac
     1621 agcggcggaa caatatcgac tttctaactc gccatagagt ccggggaagg gccgggcctg
     1681 cacgtgcaca gtcgtgagca cgaactctgc tcagtgctct gaccttttcc aacggctaac
     1741 gaacgttcct tgcgaccatt ccggaccccg acctcaagtt gatcacttgt ccggcacggg
     1801 atgcgcaccc gcgaaggcat ggccgtggcc cgcgccaaag gccggctacg cggacgccag
     1861 cccaaactct cacccaagca gcagaccgag ctacggcgga tgcacgccac cggcgactac
     1921 tcgatcaccg acctcgctga cctgttgtcc gtgtccaggc cgaccgtgta ccggaccctc
     1981 caggccaagc agaccgcggc gccggcgcgg tcgcccgtca gctgatcggc actcccttca
     2041 aaccttgccc tcgtttgtgg ctggtgacac gactcttacc ggcaccctga cagggccggg
     2101 ccgcgtcgat cagcagcggc gtgaaccgct gcacccagcg atagatggtg acgtggtcga
     2161 ccgcgatgcc gcgttcggcc agcaactctt cgacgtctct gtacgacagg ccataccgca
     2221 cgtaccaccg gccgccacca cgtcacctcc ggcggaaacc ggcacctggc aaaacctaga
     2281 cctggcggtg gcgcctgaac cggacgacag cgcatcagcc caccctgccc gagcgcgcta
     2341 tcgatctatg caacagaccc ccacgggtgg ttgatctcgg tacgctgcgg tgcagcccgc
     2401 gcgcgggtca gctccggtag cgggggttgg tggtgtgcca ttcgaagccg ccgcccatcc
     2461 aggcgcgcac cccgtgcagg aaccgttgga gctgtggcga cggcacagga aacaggctgc
     2521 gatgggtggc ttcgaaatcc cggaccaggt tgttgtgcag gtcgacggtg atcgcgatgg
     2581 cctcctcgac cgagcactgc cgatcggcgg tgatctgcaa gaccatgttg cacaccggct
     2641 tgtcgtcggc agcgtccttg gctgccgaga ccaggtcgtt gaccatcacc gaggcggtgc
     2701 cggcctgcat cagggcgcgc cggactcgcg gctcgtaata caggttggcg tccagttcgt
     2761 agccgccgac cgtgtcgatc agcgtcatcg aggtgtagaa actgtcgtgc tggcgggcgg
     2821 cgaggtactc ccaggctggc gggtaggtgc cggtgaaccg ccaggccgcg tagctgttcc
     2881 agctgacgaa catggcgaag gtcgcgtagc aggcccgctg cacctgcgcg gggctggcgt
     2941 gccgggtcag gtgctcgatt ccggaactga gcgccaccaa taccggatcg gagcgcaggg
     3001 cctggtccag gggaatggag aactcgccag ccggggccac cgggtccatc gcggccatca
     3061 ccaacgccag ccggggcggc agctcggtcg gggtggcgcc catctcgctg tcgtcggcgt
     3121 acaggtcatc agcggcccac cacgcggcgt tgagctgcgc ggcgatcagc agacggtcgg
     3181 gatcatcggt atcggtgtgg gcgagcatcg ccagccggcc gaacccggct cggcgcatca
     3241 gatcggcctg gtcatcggta aagccgcagt ctttggccca gagcactaac cggtcgtcta
     3301 cctcggcgcc cagcgcgtcg tccacccgct cgaccaccgg gacgtacagc ggcggggccg
     3361 tgccgtctcc ccaggagcgt tccaggtacg cgggatctgg gccgctgcgc agggtgagtt
     3421 cccgcgcgag acgggccgcc gaggtgccca accccgacgg gccagcccgg accgcggcaa
     3481 ctagcgcgct ttccgggccc ggcaggactg ggcagtcgcg gtgcgacggc gggccgatca
     3541 gggaaattgc ctcagcggtg ggaatgatgt ccgtcatccg gacaactcct cacagtctcg
     3601 cggtgctcgg gcctcggggt acgcgaacgc actgaataca ccacagcctg gcaggccagc
     3661 gccggcaagg acatccacca accagggtcc gtagtttcta cggacctatt ggcttcagcc
     3721 gaacatgtta ctggatcggt attgccctgt accgcaatcc ctactttagg tccgtatttc
     3781 tacggatgtc gccttaggtg cctcggcttc atgttccggc agcgcagggc gcgggacaaa
     3841 caagtaaggt tattcacgtg gtagttaatt ttggctgcgt cggtgcgcct ccatagcgga
     3901 cggctcactt ctcgaaagaa ttgggttacc acactcaatc ctcagaaacg agttgcccgg
     3961 gatatatcat acaacaggtt ccacgagaga tgaaattgtg aagttatgtg cccgcgtaca
     4021 cgcggtgaac gaggcgaccg ccgaggctga aaaggtcatc tggccgccga tcctgggatt
     4081 gttcacgtcg gtggtcgtca cgttgacgta tctgcgcaga agccgggttc aagccgagat
     4141 cggcgagtcg tatgaggtgt cgcggtcacg gtcagccgtg ccgttacggc cttgcctgga
     4201 tcattcacgc tgatccacta tttcatgatc gtctagattg tggatcatct tgtgctggga
     4261 aggcgggggt gggcgtggcg gggtggccga gggtgctcgg gtgggcgccg agttccacgg
     4321 ctcggccggg tgccgcgggt ggttgggatg ggtggggggt gatggtcagc gggggtgcag
     4381 ggcttgcagg cggttccagg cgctggccag gtcggtggag gcggtgttgc ggccgtagtc
     4441 gatcgagggc aggttgcggg cgccgcaggc cttga
//
LOCUS       DASVXZ010000795         4116 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1032362, whole genome shotgun sequence.
ACCESSION   DASVXZ010000795 DASVXZ010000000
VERSION     DASVXZ010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1032362"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VF788_16885"
     CDS             complement(<1..185)
                     /locus_tag="VF788_16885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-dependent synthetase"
                     /protein_id="HEX8935818.1"
                     /translation="MRVIRCDGSPETISELDAALRAMMAGGEAVVPVGMGQDLPPADP
                     GPGQIVLGTSGSSGARK"
     gene            complement(176..313)
                     /locus_tag="VF788_16890"
     CDS             complement(176..313)
                     /locus_tag="VF788_16890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935819.1"
                     /translation="MRPGRPEPDSRLGNGVRDDAGGECGNHGAVVAPAPGELGAVLRC
                     G"
     gene            complement(400..1299)
                     /locus_tag="VF788_16895"
     CDS             complement(400..1299)
                     /locus_tag="VF788_16895"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008935 - 1,4-dihydroxy-2-naphthoyl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HEX8935820.1"
                     /translation="MVSELFEPSAWRIVEGFDFADITYHRALAHGTVRIAFDRPEVRN
                     AFRPSTVDELYQALDHARMTPDVGCVLLTGNGPSPRDGGWAFCSGGDQRIRGRSGYQY
                     ASGETADTVDPARTGRLHILECQRLIRLMPKVVIAVVPGWAAGGGHSLHVVCDLTLAS
                     AEHARFKQTDADVGSFDGGFGSAYLARQVGQKFAREIFFLGRAYSAADAHRMGMVNAV
                     VPHASLETTALEWAAAVNAKSPTAQRMLKYAFNLIDDGLVGQQLFAGEATRLAYMTDE
                     AVEGRDAFLEKRQPDWSPFPWYY"
     gene            1470..2939
                     /locus_tag="VF788_16900"
     CDS             1470..2939
                     /locus_tag="VF788_16900"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HEX8935821.1"
                     /translation="MRNRALLIGPALAVLLVLVALVVPWRSLDRAPAAPAPSPSQATA
                     SPVIGSDGIGDPYFPRSGNGGYDVTAYDIHVRYDPPADRIEGQTTITALATESLSRFN
                     LDLRLPASAATVNDQPAQIHQDGGELQVTPAVPVQAGVPMTVRVDYAGVPSAIPGEPG
                     VPSPWVRTADGAVAVGEPDIAAWWYPSNDHPSDKAAFTITAIVPSGLQVISNGALLGG
                     PEAAGPGMQQWRWQESEPMATYLAFVAIGHYNIVRRDTRFGLYLAAYDKGLDPDLADA
                     ARASVERTPEIVEFLSGIFGPYPFRQLGGVVPNSTLGFALENQTRPVYGSGFFGGGED
                     VTVVVHELTHEWFGDSVSVRNWRDIWLNEGFATYAEWLYAERTGGLSAKQRAAREYAN
                     HPADDNFWRIPPGAPGAPGVLSGPVYTRGGMALQALRVAVGDQNFFAALRAWATERAG
                     GNGSVQDFLAVVERVSGKKVDDVAQAWLFAPARPPAPPS"
     gene            complement(3005..4114)
                     /locus_tag="VF788_16905"
     CDS             complement(3005..4114)
                     /locus_tag="VF788_16905"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008909 - isochorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HEX8935822.1"
                     /translation="MAWGEVARVCTEGPYRFARAQDWWQSFCEQLDTHDEVGLPGSGP
                     VAFASLAFDDSPGSSVLVVPRVVVGRRDGRTWVTEFQTGIATGPVVPVSRPRGLRYSD
                     GELPVTAWRDAVARAVSRMRDGAAPAKVVLAHDLLAVADEPLDPRFLLHGLAARYPSC
                     WSFAVDHLVGATPELLLRRRGTEVLSRVLAGTVWPHDGVNTEALARELLDSAKDRDEH
                     RYAVDSLAQALEPFCTELSVPSAPSVLQLRNVLHLATEVRGMLHPAGPPLLTLADAVH
                     PTAAVGGTPTPAAVSAISELEAMDRGRYAGPVGWVDAAGDGELGIALRCAQVVGRFAR
                     LFAGCGIVAGSDPDSEVAEAAAKLVPIRDALEGVD"
BASE COUNT          648 a         1448 c         1372 g          648 t
ORIGIN      
        1 cattttcgcg ctcccgaaga gcccgaggtc cccagcacga tctgtccggg ccccgggtct
       61 gccggcggga ggtcctgccc catcccgact gggactactg cctcgcctcc cgccatcatg
      121 gcgcgcagcg cggcgtccaa ctctgagatc gtctccgggg acccatcaca ccggatcacc
      181 cgcaccgcag caccgcaccc aattcgccgg gtgcgggtgc cacgaccgct ccgtggttcc
      241 cgcactcgcc accggcgtcg tcccgcacgc cgttgccgag tctgctgtcg ggctcgggac
      301 gcccaggacg catcaggcct ccctcccctt ccggcaatgc tctgttgatc gccaaccgta
      361 ccggcgcacg aaatcgtgcc gtgcgcggcc agtgagcagt tagtagtacc agggaaaggg
      421 tgaccagtcg ggctgacgct tctccaggaa ggcgtcgcgc ccttcgacgg cctcgtcagt
      481 catgtacgcc agccgggtgg cttcaccggc gaagagttgc tgaccgacga gtccgtcgtc
      541 gatcaagttg aaggcgtact tgagcatccg ctgtgcggtg ggtgacttgg cgttgaccgc
      601 ggctgcccat tccagtgcgg tcgtctccag cgaggcgtgc ggtactaccg cgttgaccat
      661 gcccatccgg tgcgcgtcgg ccgcgctgta ggcccgtccg agaaagaaga tctcccgagc
      721 gaacttctga cccacctgcc gggcgagata ggccgagccg aacccgccgt cgaaagagcc
      781 cacatcggca tcggtctgct tgaatcttgc gtgctcggct gacgcgaggg tgagatcgca
      841 gacgacatgc agggaatgcc caccgccggc ggcccacccc ggtaccaccg cgataaccac
      901 cttgggcatg agtctgatca gccgctggca ctccaggatg tgcagccgcc cggtacgcgc
      961 cgggtccacc gtgtccgcgg tctccccact ggcgtactgg tagcccgacc gaccgcggat
     1021 ccgctggtcg ccgcccgagc agaacgccca gccgccatcc cgcggtgagg gcccgttgcc
     1081 ggtgagcagc acgcatccca cgtcgggggt catccgggcg tgatccagcg cttgatacag
     1141 ctcatccacc gtggacgggc gaaacgcatt gcgcacttca ggccgatcga aggcgatccg
     1201 aaccgtgccg tgcgcgagcg cccgatgata ggtgatgtcg gcgaagtcaa atccctcgac
     1261 aatgcgccaa gcggacggct cgaacagctc ggaaaccatg aaggtgcacg ctagtggggt
     1321 cgctcaccag cctcaccccg ggtgaacctt gggcacggca tgctgatcac tcgtgaaccc
     1381 ctccactggg cggatctcca tcgctgtagc ggtgtctttg cgtccgctga gcgctgacag
     1441 ggcttaaggt cggtgccggg gaggtggcca tgcgaaaccg ggcgttgttg atcgggccgg
     1501 cgctggcggt gctgctggtg ctcgtcgcgc tggtagtccc ctggcggtct ctagaccgtg
     1561 caccagccgc gcccgcgcca tcgccctccc aagcgacggc gtcgccggtc atcgggtccg
     1621 acggcatcgg agatccgtac ttcccgcgtt cgggcaacgg tggctacgac gtcaccgcct
     1681 acgacatcca cgttcgctac gaccccccgg ccgatcggat cgaggggcag accacgatca
     1741 ccgccctggc caccgagagc ctgtcccggt tcaatctcga cctgaggttg cccgcctccg
     1801 cggcaacggt gaatgaccaa ccggcgcaga ttcatcagga tggcggtgag ctgcaggtca
     1861 ccccggctgt gccggtacaa gctggggtac cgatgacggt gcgggtcgac tacgccggcg
     1921 tgccttcggc tattcccggt gagcccggtg tcccctcacc gtgggtgcgc accgctgacg
     1981 gcgcggtcgc ggtaggcgaa cctgacatcg ctgcttggtg gtatccgtcc aacgatcacc
     2041 cctcggacaa ggccgctttc acgatcactg cgatcgtgcc ctccggtctg caggtgatct
     2101 ccaacggggc cctgctcggt gggccagagg cggccggccc cggcatgcag cagtggcggt
     2161 ggcaggagag cgagccgatg gccacctatc tggcgttcgt cgcgatcggc cactacaaca
     2221 tcgtccgccg ggacacccgc ttcggtctct accttgccgc ctacgacaag gggctggacc
     2281 cggaccttgc tgatgcggcg cgggcatcgg tggagcggac accggagatt gttgagttcc
     2341 tctccgggat attcggtccc tacccattcc gtcagctcgg cggcgtggtc cccaactcca
     2401 ccttgggctt cgcgctggag aatcagaccc gcccggttta cggatccggg ttcttcggtg
     2461 gcggcgagga tgtcacggtg gtggtgcacg agctgactca cgaatggttc ggggacagcg
     2521 tatcggtgcg taactggcgc gacatctggc tcaacgaagg tttcgctacg tatgccgaat
     2581 ggctgtacgc cgaacgcacc ggtggcctca gcgccaaaca gcgggccgcg cgggaatacg
     2641 ccaaccatcc cgctgacgac aacttctggc ggattccacc gggtgctccc ggcgcgccgg
     2701 gggtgctctc cggcccggtc tacacgcgtg gcgggatggc tctgcaggcg ctgcgcgtgg
     2761 cggtagggga ccagaacttc ttcgccgcgt tgcgcgcgtg ggcgaccgag cgggccggcg
     2821 gcaacggttc ggtgcaggac ttcctggccg tcgttgagcg tgtctccggc aagaaagtcg
     2881 acgacgtagc ccaagcctgg ctgttcgccc ccgcccgccc gcctgcgccc cccagctgac
     2941 cgccagcgac ccgctcggca gctgaggatt ggcggcgcgt cagcgcttga cggtgcgggc
     3001 gggatcagtc gacgccttcc agggcatcgc ggatggggac tagtttggcg gcggcttcgg
     3061 cgacttcgga gtcgggatcg gagccggcca cgatgccgca accggcgaac agccgggcga
     3121 accggccgac gacctgagcg cagcgcagcg cgatgcccag ctcgccatct ccggcggcgt
     3181 cgacccagcc gaccgggccg gcatagcgcc cgcggtccat cgcttccagc tcgctgatcg
     3241 cgctgaccgc ggccggggta ggcgttccgc ccacggctgc ggtggggtgc acggcatcgg
     3301 ccagcgtcag caacgggggg cctgcggggt gcagcattcc ccgcacctcg gtggcaaggt
     3361 gcagcacgtt gcgcagctgc agcacgctgg gtgcgctcgg cacggacagc tcggtgcaga
     3421 acggttccag agcctgcgcc agggagtcca ccgcgtatcg gtgctcatcg cgatccttcg
     3481 ccgagtcgag gagctcacgt gccagcgcct cggtgttgac cccgtcgtgc ggccaaacag
     3541 ttcccgcgag tacccgcgag agcacctcgg tgccgcgccg gcgcagcagc aactccgggg
     3601 tcgcgccgac cagatggtcc accgcgaacg accaacagga cgggtatcgt gcggccagcc
     3661 cgtgcagcag gaaccgggga tccagcggtt catcagcgac ggcaagcagg tcgtgtgcga
     3721 gtaccacctt cgccggcgcc gccccgtcgc gcatccggga taccgcccgg gcgacggcat
     3781 cgcgccacgc ggtcacgggc agctcgccat cggagtagcg caacccgcgg ggccggctca
     3841 ccggcaccac cggcccggtc gcgataccgg tctggaactc ggtgacccag gtccgaccgt
     3901 cgcgccggcc cactaccacg cgcggcacca ccaggaccga gctgcccggg gagtcgtcga
     3961 aggccaggct ggcgaaggca acgggaccgc tgcccggcag cccgacctcg tcatgagtgt
     4021 ccagctgctc gcagaaggac tgccaccagt cctgagcccg ggcgaagcgg tacgggcctt
     4081 cagtgcatac ccgcgccacc tccccccagg ccacca
//
LOCUS       DASVXZ010000796         2995 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_763753, whole genome shotgun sequence.
ACCESSION   DASVXZ010000796 DASVXZ010000000
VERSION     DASVXZ010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2995
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_763753"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VF788_16910"
     CDS             complement(<1..580)
                     /locus_tag="VF788_16910"
                     /inference="COORDINATES: protein motif:HMM:NF025871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEX8935823.1"
                     /translation="MDPGLLGLRRQLEEAFLTALRAEVRGGTDVAAEIDALLIEVVDA
                     RGVSHHLRRTGQFWQLREYVVHRSLYHLKEADPQAWVIPRLSGPAKTALVTIEHDEYG
                     SGNPQRMHACLFAEMMTELGLCPDYGAYLDAAPAATLAEVNFMSLCGLHRRLRGALVG
                     QFATVELTSSPGADRLVQAMRRLGCGPAAIEFY"
     gene            complement(829..1062)
                     /locus_tag="VF788_16915"
     CDS             complement(829..1062)
                     /locus_tag="VF788_16915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017983838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HEX8935824.1"
                     /translation="MCAEPVRRQVALTDDGPVLVHGPIEVVLPDGCRVSSDRAVTALC
                     TCRRSRRYPFCDTSHRRGVGSSSARGSDDDMST"
     gene            complement(1052..1708)
                     /locus_tag="VF788_16920"
     CDS             complement(1052..1708)
                     /locus_tag="VF788_16920"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK2/MTQ2 family protein methyltransferase"
                     /protein_id="HEX8935825.1"
                     /translation="MFLVRPPGVYRVDTDTSLLLDVLREGGYADGRRVLDIGTGTGAL
                     ALAAARAGAASVTAVDLSLRSVAAAWLNSRLHRVACIVRCGDLFGPVAGQYFDLILAN
                     PPYVPAATNILPRHRISRCWDGGLDGRAVLDRVCTEGPALLARDGVMLLVHSAVCDED
                     ITMKRFADAGLHAEVLTRCTVAFGPVMRARAAMLQARGLVQPRQRDEELVVIGAHRVC
                     "
BASE COUNT          619 a          939 c          914 g          523 t
ORIGIN      
        1 cgtagaactc gatcgcggcg ggcccgcaac ccaatcggcg catggcctga accagtcggt
       61 cggccccggg ggaggaagtc agctccacgg tagcgaactg gccgaccagc gcgccgcgta
      121 gccgacggtg caatccgcac agcgacatga agttgacctc agccagggtc gcggccggcg
      181 cagcatcgag gtaggcgccg taatcgggac acaggccgag ctcggtcatc atctcggcga
      241 acagacacgc gtgcatgcgt tgcgggttgc ctgagccgta ctcgtcgtgc tcgatggtca
      301 ccagtgccgt cttggccggc ccgctgagcc ggggaatgac ccaggcctgc gggtcggcct
      361 ctttgaggtg gtaaagcgag cggtgcacga cgtactcgcg cagctgccag aattgcccgg
      421 tgcggcgcag gtggtgtgag acgccgcggg cgtccaccac ctcgatcagc agcgcgtcga
      481 tctcggcggc gacgtcggtc ccgccccgga cctcagcccg cagcgcggtg aggaaggctt
      541 cttccaactg ccggcgcagc ccgagcaatc ccgggtccac tccaggccat cgccgacccc
      601 agcgaaaccc caatagtgca gctcgtagca gcagtacagc gccagctgca ggtcctcacc
      661 gtacgggtcg gcctgttcca cagccgccga tccgatctcc gtgatggacg gtgctgccgc
      721 gctgccgcgc aacacctcca gcacggcaac acacagtggg ccgcgcggcg ccggaagcgc
      781 aggtgccgta acgggccgcg atctggcagt gctcagcatc cccacccctc acgtgctcat
      841 atcgtcatcg ctgccgcggg ccgagctgct accaacccct cgccgatggc tggtgtcgca
      901 aaacgggtag cggcggctgc gccgacacgt acacaacgcg gtcaccgccc gatcggagct
      961 cacccggcaa ccgtcgggca gcacgacctc gatgggaccg tgcaccagca cgggcccatc
     1021 gtcggtcagg gcgacttggc gccggacagg ttcagcacac acggtgggct ccgatgacca
     1081 cgagttcctc gtcgcgttgt cgaggctgga caagtccgcg ggcttgcagc atggcggcgc
     1141 gggcacgcat gacgggaccg aaggccaccg tgcatcgagt aaggacctcg gcgtgcagac
     1201 ctgcgtcggc gaagcgcttc atcgtgatgt cctcgtcaca gacggcggag tgaaccagca
     1261 gcatcacgcc atcccgagcc agcagggcag gcccttcagt gcagacccga tccagcacgg
     1321 cacgtccgtc caggcccccg tcccagcagc ggctgatccg gtgccggggc agtatgttcg
     1381 tcgccgcagg aacatagggc gggttggcca gaatgagatc gaaatactgg cccgctaccg
     1441 gcccgaacag gtcaccacag cgcacgatgc acgcaacgcg atgcaagcgg ctgttgagcc
     1501 aggcagccgc aaccgagcgc agcgacaaat ccaccgcggt gaccgaagcc gcgcccgcac
     1561 gggcggcggc caacgcgagt gcgccggtgc cagtaccgat gtccaggaca cggcggccat
     1621 ccgcataccc accttcgcgc agcacgtcga gcaataagga ggtgtccgta tcgacccgat
     1681 acacccccgg tggccgcacc aggaacatgg ccgtcgtcta cccgcaacac aacttggaga
     1741 aacctctggc tcttctcctg caccctggag caccgtaccg aaattccatt gccgccagcg
     1801 gaggatgtcc tgcggatgga tcttggtgac cgggtgacgg acgatggccg gatgaggtct
     1861 cgtgtgcgct cagacagggt acctacgttg gtgaggttgc tccggatgtc acaggtggtg
     1921 tacttcgctg cgttgtcgtt gttccggtcg ttccggtgtg cagtagtgcc cggaacgact
     1981 ctgtcagcgt ggctgggttc acaagcaggt cgagaagatg gtgatgggtc gagttacgtc
     2041 gccgggccgg cctgatgaag gaaactgttg cgcttgggcc ggtcccaagg aagggcgcgg
     2101 ccggcaagcc tcgtgcggag tgcataacca gaggccacga tgaatgaatt catttctcac
     2161 acttcctgga tgcgtgacat tcccgaggaa actccggtga cggcgctgaa cattcctgga
     2221 acacataact cccccagcat cggcggactg ttggattcgc acaggctcag aaattggacc
     2281 tcgctaccca gttgattggg gatacgcttt ctggacatca gactggcgca gtgtcacagc
     2341 gaccttcacg tccaccacga tatgaaatgt atgggtaagg attataagga cattgcaact
     2401 gtttgccgga actttctcga cacgcacccg tccgaaacta ttgtcatgtc agtcaaaaat
     2461 aaaagtgacg tcgatagcaa ctccgacaag ttcgctcctt ctcaagtcct ccgaaagtgg
     2521 cccagggggg acgttgtgaa taggagcaac accccttctt tcgaagagac attgaaggca
     2581 aaacctacga acacgccgac aaggctccgc tgttctataa cttcgccctc cgccgtcctc
     2641 gcggggattc aatgactagt ggtcatgtgt tcacatcgga aacaacgttg ggtgacgttc
     2701 gcagtaagat cgtcttgtta cgcaggttcg aaggcagtta agacgtcagg ctcgccctta
     2761 cttactggcc ggagaaccag aaattcagaa gtgcgtcacc tccgttctac gatgtccatg
     2821 atcgttatta gggactcaaa ggcgcggaga aatacgagct catcgttgct cacctagagg
     2881 aagcaaaacg tggtgactcc aaggatctgt acattacttt ccagtgccgt tgatctgaaa
     2941 gctcgcggct tcgcgaaaac gataaatcca cgcctcaatg actatgagca ttatt
//
LOCUS       DASVXZ010000797         4029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_943943, whole genome shotgun sequence.
ACCESSION   DASVXZ010000797 DASVXZ010000000
VERSION     DASVXZ010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4029
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_943943"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            9..299
                     /locus_tag="VF788_16925"
                     /pseudo
     CDS             9..299
                     /locus_tag="VF788_16925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(322..1401)
                     /locus_tag="VF788_16930"
     CDS             complement(322..1401)
                     /locus_tag="VF788_16930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006901171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8935826.1"
                     /translation="MPQPVEDDQNSSPEEVILGVDTHKDLHVAAVLTVLGALRETKTF
                     PATAAGYQALLAWVGTFGILRRAGVECTGSYGAALARYLRAAGVEVIEVNQPDKATRR
                     QRGKTDTLDAEAAARAVLSGRASATAKAGDGPVEMLRMFKLAKASAIKARTQTINQLK
                     AVLVAADPQLRETLSGLSNLRLIRRCADLDIDTPQDTTSAAAYTLQLLARRIQTLTDE
                     IRELDHQITIAVTSHTPQVMTRCGVGPDNAAALLIAAGDNPDRLHSEASFAALCGVSP
                     LEASSGKTSRRRLNRGGDRQANSALYRIALCRLRWDPRTRDYLARRITEGKTRREAIR
                     CLKRYIAREIYRIITSPPETQPSAA"
     gene            complement(1733..2368)
                     /locus_tag="VF788_16935"
     CDS             complement(1733..2368)
                     /locus_tag="VF788_16935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HEX8935827.1"
                     /translation="MLAVRWYLRYGLSYRDVEELLAERGITVDHVTIYRWVQRFTPLL
                     VDAARPCRHCPGDRWFVDETYVKVAGRWVYLYRAIDQFGQVIDVLVSQKRDLTTTRRF
                     FTRALEHCLRPTEVTTDQAAAYARVLDELLPAARHVIEQYANNPIESDHGRLKARLTP
                     MRGLKRLRSARVISTGHAFIQNLRRGHYELGIDADPKRQLLAAFTELAVAI"
     gene            complement(2322..2780)
                     /locus_tag="VF788_16940"
     CDS             complement(2322..2780)
                     /locus_tag="VF788_16940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935828.1"
                     /translation="MARRKQAPKDLTGIRQRGGRYQIRLFGGQDPVTGKQVMLTGSVE
                     DEEAAIKLRDRFRRQVAEATAARTSVTLGYLLDEWLAGHQVEETTRTSYRMGLLQGGK
                     TPFGHAQAHAPHPPCSPGPAATIGVHRLPVSTGGDRARSALVPPLWTFVS"
     gene            complement(2871..2947)
                     /locus_tag="VF788_16945"
     tRNA            complement(2871..2947)
                     /locus_tag="VF788_16945"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2911..2913),aa:Phe,seq:gaa)
     gene            complement(2982..3055)
                     /locus_tag="VF788_16950"
     tRNA            complement(2982..3055)
                     /locus_tag="VF788_16950"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3019..3021),aa:Asp,seq:gtc)
     gene            complement(3065..3137)
                     /locus_tag="VF788_16955"
     tRNA            complement(3065..3137)
                     /locus_tag="VF788_16955"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3101..3103),aa:Glu,seq:ttc)
     gene            complement(3297..3530)
                     /locus_tag="VF788_16960"
     CDS             complement(3297..3530)
                     /locus_tag="VF788_16960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935829.1"
                     /translation="MSRLPSTYDLGLETGAELTRGSVPMQRGQDPHRVTAEQVDRARL
                     SVARSATGAEDCRMLLDMLGLIDGEDGIPPVRR"
     gene            complement(3683..>4029)
                     /locus_tag="VF788_16965"
     CDS             complement(3683..>4029)
                     /locus_tag="VF788_16965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8935830.1"
                     /translation="RADAVQQVHCHQHAILGHEADDALLDLAGIRVRRASGCCGLAGS
                     FGYQRGHEELSAALAQRSLAPAVRAMPGALVLADGFSCRQQIAQTTGRCALHLAELLD
                     GGTREGQPLVER"
BASE COUNT          658 a         1293 c         1355 g          723 t
ORIGIN      
        1 cccgggatgt gatcgtgctg gcagtgcgct ggtacttccg ttatggattg tcgtaccgcg
       61 atgttgaaga gctactggcc gagcgcggag tgcaggtcga ccacgtgacc gtgtttcggt
      121 gggtgcagcg gttcactcca ctactcatcg acgcggcccg ggcctgccgg cacgcccccg
      181 gcgatcggtg gttcgtcgac gaaacatacg tcaagatcag tggccggtgg gtctacctgt
      241 accgcgcgat cgaccagttc ggacaggtca tcgacgtcat ggtcgcggag aagcgggacg
      301 gcgctgatgc ccctatggat gtcaagcagc tgagggctgc gtttcgggtg gtgaggtgat
      361 gatccgatag atttcgcggg cgatgtagcg cttgaggcag cggatggctt cgcggcgggt
      421 cttgccttcg gtgatgcggc gggcgaggta gtcgcgggta cgagggtccc agcgcagccg
      481 gcacagggcg atgcggtaga gcgcggaatt ggcttgtcgg tcgccgccgc ggttgaggcg
      541 gcgacggctg gtcttgcctg aggacgcttc cagggggctg acgccgcaca gggcggcgaa
      601 ggaggcctca ctgtgtagtc ggtcggggtt gtcgccggcg gcgatgagca gagcggcggc
      661 gttgtccggg cccaccccgc agcgggtcat cacctgggga gtgtgactgg tgacggcaat
      721 ggtgatctgg tggtccagct cgcggatctc gtcggtgagt gtctggatgc gtcgggccag
      781 gagctgcagg gtgtaggcgg cggcgctggt ggtgtcctgc ggtgtgtcga tgtccaggtc
      841 cgcgcagcga cggatcagtc gcaggttgct cagtccagag agtgtttcgc gcagctgggg
      901 atcggccgcg acgagcacgg ctttgagttg gttgatcgtc tgggtgcggg ccttgatagc
      961 ggaggccttg gccagcttga acatccgcag catctccacc ggcccgtcac cggccttcgc
     1021 cgtcgcgctg gcccggccgc tgagcactgc ccgggcagcg gcttcggcgt cgagggtgtc
     1081 ggtcttgccc cgctggcggc gggtggcctt gtctggctgg ttgacctcga tcacctcgac
     1141 cccggccgct cgcaggtacc gggccagcgc cgcaccgtag gagccagtgc actccactcc
     1201 ggcccgccgc aggatgccga atgtgcctac ccacgccagc aacgcttggt agccggctgc
     1261 ggtagccggg aacgtcttag tttctcgcag tgcgccgagc acagtaagca ctgcggccac
     1321 gtgcaggtcc ttgtgggtat ccacaccgag aattacttcc tcggggctgc tgttctggtc
     1381 gtcctccacc ggctgaggca tcctaggcat ggtcgtccct ctcctgatcg ccacggaatg
     1441 gatggccgtc gccggaccgg tgtgggcggt cagaactgtg acggtgccct gttgatggca
     1501 aggcccctat cgggacacgc ccacccggtc cggcggcagc aagcaccacc cccagccatg
     1561 gtcgacagat cagcgtcaag gcatgtcagc cagttgcgtt gcgggtcaga ccacggccgg
     1621 ggatggcacg ccggcgatct tcacagtcag accaagctct gaggcggtac acgccgatcc
     1681 tcacagttgc gttgacggaa tgtggatgtg acaagcctgc gtggagctgt gatcagatgg
     1741 caacggcgag ttcggtgaag gccgccagga gctgtcgctt cgggtcagca tcgatgccga
     1801 gttcgtagtg gccgcgccgg aggttttgga tgaacgcgtg gccggtgctg atgacacggg
     1861 cggagcgcag ccgtttcagt ccgcgcatcg gagtcaatcg ggccttgagc ctgccatgat
     1921 cggattcaat gggattgttg gcgtattgct ctatgacatg gcgcgcggcg ggcagaagct
     1981 catcgagcac tcgggcgtag gccgcggctt ggtcggtggt cacctcggtc gggcgtaggc
     2041 agtgctccag ggcgcgggtg aagaaccggc gggtggtcgt cagatcccgt ttctgggata
     2101 ccagtacgtc gatgacctgc ccgaactgat cgatcgctcg gtatagatag acccaccgtc
     2161 cggcgacttt cacataggtc tcgtccacga accacctgtc accgggacag tgccggcaag
     2221 gccgggccgc gtcgaccagc agcggcgtga accgctgcac ccagcgatag atggtgacgt
     2281 gatcgaccgt gataccgcgc tcggccagca gctcttcgac atcacgatac gaaagtccat
     2341 aacggaggta ccagcgcact gcgagcacga tcacctcccg tggaaaccgg aagccggtga
     2401 acgccgatgg tggcggcagg accgggcgaa cacggcggat gcggcgcatg agcttgagca
     2461 tgcccgaacg gcgtcttccc tccctgcaac agtcccatcc ggtagctggt ccgggtggtc
     2521 tcctcgactt ggtgaccggc tagccactcg tcaagcaggt agcccaacgt cacgctcgtc
     2581 cgcgccgccg tcgcctccgc aacctgccgc cggaacctgt cccgcagctt gatcgccgct
     2641 tcctcgtcct ccaccgaacc ggtcagcatc acctgcttgc cggtcaccgg atcttgccca
     2701 ccgaacaacc ggatctggta ccgaccgccc cgttgccgga tgccggttag gtccttcgga
     2761 gcctgcttcc tgcgtgccat gagaggcagt gtaagcagcg gaattggaca gtctgttgga
     2821 caaagatcga ctatagatca ccagatatga gggtttgcgc tgatgagagg tggtggccag
     2881 gggcggggtc gaaccgccga ccttccgatt ttcagtcgga cgctcgtacc aactgagcta
     2941 cctggccgtg cgggccgccg gcgacccgcg gtgtattgaa gcgacccaga cgggactcga
     3001 acccgcgacc ttcgccgtga cagtgcgacg cgctaaccaa ctgcgccact gggccttgct
     3061 ctcgtgcccc caacgggatt cgaacccgcg ctgccgcctt gaaagggcgg agtcctaggc
     3121 cgctagacga tggggacttg gtcgtccaga cctgcccgcg ccggtggccc gtcgtgagca
     3181 caaccagcat aggacaccgc cgtgatcggg tgcacgacgg gtactcgtat cggcggctaa
     3241 ccgccgtcac cgcccggcgt cgtcatcggc gtaccagggt caccgacgta ccagggttac
     3301 cgacgtaccg gcgggatgcc atcctcacca tcgatgagac ccaacatgtc caacagcatc
     3361 cggcagtcct cggcgccggt cgccgatcgc gccaccgaca ggcgagcccg atccacctgc
     3421 tcggccgtaa cgcgatgcgg atcctgcccg cgctgcatgg gcaccgagcc cctggtcagt
     3481 tccgcgccag tctccagacc gagatcgtag gtgctcggca gacggctcat tcgcccctcc
     3541 tgaacttcgt tctcacgtac ccgcatgtac ccacgtcgtc accgctcggc gcaacctatc
     3601 taccgttcat cgtcagttgc agcctcctac cgggtgatta cctgtggtta accgtctcca
     3661 aagggcgtaa aacgcccacc gctcagcgct cgaccagcgg ttgcccctcg cgcgtacccc
     3721 cgtcgaggag ctcggcgagg tgcagcgcgc accggcccgt cgtctgggcg atctgctggc
     3781 ggcagctgaa tccgtccgcc aggaccagtg cgccgggcat ggcccggacg gccggagcca
     3841 gcgagcgttg cgccagcgca gcggacagtt cctcgtgccc acgctggtag ccgaagctgc
     3901 cagccagccc gcagcatccg gaagcccgcc gtacccggat gccggctaag tccagcagcg
     3961 cgtcgtccgc ctcgtggccg aggatcgcgt gctgatggca gtgcacctgc tgcaccgcat
     4021 cggcacgcc
//
LOCUS       DASVXZ010000798         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_764094, whole genome shotgun sequence.
ACCESSION   DASVXZ010000798 DASVXZ010000000
VERSION     DASVXZ010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764094"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..609
                     /locus_tag="VF788_16970"
     CDS             <1..609
                     /locus_tag="VF788_16970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013225393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX8935831.1"
                     /translation="GLLGAGQVVFSAFSSVLIVVVLTVYFVADLPRIRATLYRLVPHS
                     RRPRAILLGDEIFAKVGGYVLGNLLISLIAAVLTFAFLAIMGVPYSLLLSIFVGVLDL
                     VPVIGSTIAGVAVCLVALSVSLPICLATAGFFLVYRLAEDYLLVPRIIGRVVKVPALV
                     TVVAVLVGGALLGIVGALVAIPAAAALLLLTREVLFPRLDHA"
     gene            682..1200
                     /locus_tag="VF788_16975"
     CDS             682..1200
                     /locus_tag="VF788_16975"
                     /inference="COORDINATES: protein motif:HMM:NF025385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4235 domain-containing protein"
                     /protein_id="HEX8935832.1"
                     /translation="MAHVSINGVKARGNELTEQAVERGNELKTQVLERSNELRDRAVE
                     VAERTRGAAGQVSKSRWAKLAGSGLALIRARAKDAELVNQPRNVSFQLVTLASGVIGG
                     ALAGVVFNRIWRAVSGTEQAPEPASLDHSMREVLVAGALQGAVFGLVKAAVGRVTAKG
                     YQRFTGGNDPRS"
     gene            complement(1284..>1669)
                     /locus_tag="VF788_16980"
     CDS             complement(1284..>1669)
                     /locus_tag="VF788_16980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935833.1"
                     /translation="RLIDGRADSRCTPGAVNPAVTQDNIHSTVCVPGWTDKVQPAADY
                     AAALKLRQMRDFGETGSPQNYKEDHLIPLSLGGAPIDPKNLFPQPTAKTTEKEELEDR
                     LHQSVCSGQLPLTAAQAQIRRDWAR"
BASE COUNT          274 a          504 c          538 g          353 t
ORIGIN      
        1 ggtttgctgg gcgctggcca ggttgtgttc agcgcctttt ccagcgtcct tatcgtggtg
       61 gtactcaccg tctattttgt ggccgatctg ccccgcatcc gcgcgaccct ctaccggctg
      121 gtgccacatt cccggcgacc ccgggcgatc ctgctcggcg atgagatctt cgccaaggtc
      181 ggtggctacg tgctaggcaa cctgctgatc tcgctgatcg ccgcggttct cacgttcgcc
      241 ttcctggcca tcatgggagt tccctactca ctgctgctaa gcatcttcgt gggagtgctg
      301 gacctggtcc cagtgatcgg ctccaccatc gcgggcgtgg cggtatgcct ggtcgcgttg
      361 agcgtgtcat tgcccatctg cctggccacc gccgggttct tcctggtcta ccggctggcc
      421 gaggactacc tgctcgtccc tagaatcatc ggccgggtgg tgaaggtacc ggctctcgtg
      481 accgtcgtgg cggtactggt gggcggtgct ctgctaggca tcgtgggcgc cctggtcgcc
      541 atccccgccg ccgcggccct gctgctgctg acccgagaag tactctttcc tcgcctcgac
      601 cacgcttaat cgtccgatgt ttaccctcag ataaaccggg tagctgactg caacacctga
      661 gaatgcggaa gggaactgga gatggcgcac gtgtcaatca acggagtcaa agctcggggc
      721 aatgagctga ccgagcaagc cgtcgaacgc ggcaacgagc tcaagactca agtccttgag
      781 cgcagtaatg agctgcgcga ccgagccgtc gaggtcgctg agcggacccg tggggcagcc
      841 ggtcaggtgt cgaagagcag gtgggccaaa ctcgcaggtt ccggacttgc gttgatccgt
      901 gcgcgcgcga aggatgctga actcgtgaac caacccagaa atgtgagctt ccagctggtg
      961 actctggcca gcggcgtcat cggtggtgcc ctggctggag tcgtgttcaa ccggatctgg
     1021 cgcgccgtat ccggcactga acaggcgccc gaacctgcct cattggatca cagcatgcgt
     1081 gaagtgttgg tcgctggagc gctccagggt gcggttttcg ggctggtgaa agctgccgtg
     1141 ggtcgagtaa ccgcgaaggg ctatcaacgg ttcaccgggg ggaatgatcc gcgaagctga
     1201 gcaggctgtc cttcaccggt gtcgccccgc catggcgggg cgacaccgtc gaaaataggt
     1261 gcatcaatca tcgggcccat cactcaacgg gcccagtcgc gtcgtatctg cgcttgcgca
     1321 gcggtcaggg gcagctgacc cgagcagacc gactgatgga ggcggtcttc gagctcttcc
     1381 ttctcagtag tcttcgctgt gggctgagga aagagatttt tcgggtcgat gggtgctccg
     1441 cccagtgaca gaggtatcag gtggtcttct ttatagttct gcggtgagcc agtctcgccg
     1501 aaatcgcgca tctgccggag cttgagcgcg gcagcgtaat cagccgctgg ttgcaccttg
     1561 tcggtccacc ccggaacgca gaccgtgctg tggatgttgt cctgggtgac cgccggattg
     1621 acggcacccg gtgtgcaacg gctatccgca cgcccatcta tcaggcggc
//
LOCUS       DASVXZ010000799         3509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1661390, whole genome shotgun sequence.
ACCESSION   DASVXZ010000799 DASVXZ010000000
VERSION     DASVXZ010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3509
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1661390"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(393..1238)
                     /locus_tag="VF788_16985"
     CDS             complement(393..1238)
                     /locus_tag="VF788_16985"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935834.1"
                     /translation="MPTIRRRRLGAALRRLREGSGMSLEAVAKELGWSTSKVSRIELA
                     KIAVTPADVRALLGVLDALSEEVETLVSLASEDRQLGWWRQYAEVLPPWFEGYLSLES
                     EAARLLAYESEVAPGLLQTEQYAAEILRHSSYTQLPDEAARAAELRRARQVRLVGLDP
                     IYLDVVINEGVLRRVVGGRDVMRGQLSRLIEAAELPNVALRVLPFAAGAHPGVDGSFT
                     VLEFADPSNPRIVYLDRMTDSEYLDGLRDVAAYRHAHERLRASALSMSDSREMISGLL
                     RELMQ"
     gene            complement(1470..1841)
                     /locus_tag="VF788_16990"
     CDS             complement(1470..1841)
                     /locus_tag="VF788_16990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935835.1"
                     /translation="MDIRFITSISIVTSYPAESRRLFVNALGLPLTGDDDYLFSESLN
                     GIKHFGIWPLAAAYACFGINTWPADRPIPQASIEFEVDDVAAAAQELRDEGYQLLHSA
                     RIERLTSSSTLSSIHTYRGLL"
     gene            1987..2220
                     /locus_tag="VF788_16995"
     CDS             1987..2220
                     /locus_tag="VF788_16995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935836.1"
                     /translation="MRVALGRTRDVVLIDTSANLLGWDEFSIEYRDAYVAKCGRDPRE
                     SKSEAAAWPVLASMDQNYCPGQAATRRTLASRA"
     gene            3164..3415
                     /locus_tag="VF788_17000"
     CDS             3164..3415
                     /locus_tag="VF788_17000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8935837.1"
                     /translation="MGEWDLPSIAEIIPTASLSAASWRKSSYSNPSGDCVELTELPGE
                     QIAVRYSHLPDGPTLIFARAEMVALIRSAKGGEFDGLSG"
BASE COUNT          738 a         1102 c         1015 g          654 t
ORIGIN      
        1 cagcggtagg ggtcatctgg cggtcatcgc cgacccgaat tctgtcacca tcccggaact
       61 gcagatggtt gcgctccagg cagcctttga catccacccc accccggtcg acgccctcca
      121 agcctgcacc cgcgcccgac agcagcgttt gttataggca acagggacgg ccacttcatc
      181 aaaccccgca cgtccactca gcgagcgcgg ctggcgacac cccagcattc ggcaagacag
      241 gcgacgttgc cagaaggccg ctgcagctag cgtcatgacc ccgtgcctga ctctagcgtt
      301 gacgccagta caattttagt cgctccctgt acctattttg cgccagcgcc cttcggggga
      361 gcgattcgaa ccccccgagg tatcatgctt catcattgca tcagctcccg taacagtccg
      421 ctgatcatct cgcgggaatc gctcatcgac agcgcggacg cacgtagtcg ctcgtgggcg
      481 tgacgatagg ccgccacgtc ccgcaaacca tccaggtact cgctgtctgt catccgatcc
      541 agatagacga tccgcggatt gctcggatca gcaaattcca acacggtgaa cgacccgtcc
      601 acaccgggat gagcaccggc agcaaagggc aacacccgca gtgctacgtt aggaagctct
      661 gcagcttcga tcaagcggct cagctgcccg cgcatcacgt cccggccacc gacaacgcgc
      721 cgaagtacac cctcgttgat caccacatcc agatatatcg gatccaggcc aaccagccgg
      781 acctgccgag cgcgtcgcaa ctctgctgcc ctggccgctt catccggtag ctgcgtgtag
      841 gacgagtgcc gcagtatctc ggccgcgtac tgctcggtct gcaacagacc gggcgcaacc
      901 tccgactcat aagccagcaa ccgcgcagct tcggactcca aagacaaata accctcgaac
      961 caaggtggca acacctcggc gtactggcgc caccagccca gttgacggtc ctcgctagcc
     1021 aaactgacta gagtctctac ttcctcggac agcgcatcga gtacccccaa cagcgcacgc
     1081 acgtccgccg gcgtgaccgc aatcttggct agttcaatgc gactgacctt gctggtcgac
     1141 cagcccaact ccttggccac agcctccaga ctcatgccgc tgccctcgcg aagccgacgc
     1201 agcgccgctc ccagacgccg ccttcggatg gtaggcaccg acaccatggc ccccgacaat
     1261 gccacagtaa ctatctccaa tgactcagat ggtgggtgag gtgagcacct ttagccgcgt
     1321 tgtgcaaatt gctcagcaac ctgatgacct tgtggttacg caccgtacac cccgcaaccg
     1381 acagtgatca acagggaatc tagcgccgcc cggtcctgac ccctggctca gacagtgtcc
     1441 ccactgaaca agtcagcaac gacgcaccgc tagagcagcc ctcgatatgt atggatcgac
     1501 gacagggtcg aacttgatgt gagccgttcg atgcgggccg agtgaagtag ctgatatccc
     1561 tcgtcccgga gttcttgagc cgcggcggcg acgtcatcga cctcgaattc gatgctagct
     1621 tggggtatgg gtcggtcagc gggccaggtg ttgatgccga aacaagcgta cgcggcggcg
     1681 aggggccaaa tgccgaagtg cttgatgccg tttaaactct cgctgaacag gtagtcgtcg
     1741 tcaccagtca gtgggaggcc cagcgcgttg acgaagagcc gccgactttc ggctgggtag
     1801 ctggtcacaa tcgagatgct ggtgatgaag cggatgtcca tggcgtgcag tctgccattg
     1861 gcgggttgct gaggcagtcg attgccagcc gatcggactt tgtccggcgc gccaccgctc
     1921 cgccggacga cgaccaacac ggcggagaag gctcccacgg ctcggaatat cgtagaaaat
     1981 ggacatgtgc gcgttgcact agggcgtacc cgcgacgttg tgctcatcga tacctccgcc
     2041 aacctgctgg gctgggacga gttctcgatt gaatatcgtg atgcgtacgt cgcgaagtgc
     2101 gggcgggatc caagagaaag caaatccgag gccgctgcct ggccagtgct ggcctcgatg
     2161 gatcagaatt actgccccgg ccaagcggca accagacgga cactggctag ccgcgcctga
     2221 ctgcgccaag tggggaacca cagattaccg attcagaggt ttcgccaaca gcaaaaggcg
     2281 gacatcggct acggctaaat gctccaacga ttagctgacg gttgccttca cataccttat
     2341 gttaatatct tatgcgaagg gcaactttta gcccgatccg gccgcagcgg catgatcacc
     2401 tgttgttgag acctgctgct gacagggatg ggctcgctcg tgaggttgtc atcgcggccc
     2461 ccaggcgggc ggcacggatg gcggcccggt caggtggtgg aaaccggatc gccatcgggc
     2521 gttgctcagc ccgcggtata tgcaaggaga tgggagcagg ataagcgctg gtgggcgcgt
     2581 tgcagtgctg aggatgtacc aactcgagta acgcaggcag cgcccactgc ggcggccccg
     2641 catatgccca cacgacggcc tcgggagcga acacgtcgat ccgcctacgt tggggtgcgt
     2701 agacccttgc ggtggtgatc caatctaagc accggatggt aacgagatcg acgtaaccct
     2761 cccaccgata ggacgcgatt agagcaaagg gcgcagctct gggtccgcag caatgcagcg
     2821 tgaacccatc agcgacgacc cctagtagca gccgctccac ttctaccggt aggtgagtct
     2881 cgctgcctgg gtgcagtgcc gacaacgttg gcggcctcat ggccggacta ccatctcgca
     2941 taccgaccgt gttaatgcgc ggtagcgcgg ccatacaacc cccttagtgg tcggtccgca
     3001 catggcagtg accaccgtct cagagaactc atgcagatgc aagagcagat gcactaacat
     3061 gcaattgcgc tagcggcgtg cgtaccaatg caagaacggt cagacacctg accgttcggt
     3121 tcgcgtggtt tgaccgcttt gacggatacg gaggacgcgc cctatgggtg agtgggattt
     3181 gccatcgatc gctgaaatta ttccgaccgc ctcgctcagt gctgcgtcct ggcgaaagag
     3241 cagttatagt aatcccagtg gcgattgcgt agagctaacc gagctgcccg gtgagcagat
     3301 cgcggtacga tactcccacc ttccggacgg ccccaccctt atcttcgccc gtgcagagat
     3361 ggtggccttg attcggagcg ccaagggcgg cgagttcgac ggcttgagcg gataagcgct
     3421 gcgattattt aagaaattat tgcgcagtcc gctgcccgcc atctgtcaaa ggaattgctt
     3481 atctcacgat cagtccgcct gttgttgac
//
LOCUS       DASVXZ010000800         9284 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_585877, whole genome shotgun sequence.
ACCESSION   DASVXZ010000800 DASVXZ010000000
VERSION     DASVXZ010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9284
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585877"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1801)
                     /locus_tag="VF788_17005"
     CDS             complement(<1..1801)
                     /locus_tag="VF788_17005"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8935838.1"
                     /translation="MVAYEPMPVLAGTPAVPAPRGAPEVSFANELKYWTRQLHGVQLP
                     EWPARSMRPTGSSTGTGTYACAVSREVTAQLRVLSSQLDVTLLGLAVAVCQIVLARHS
                     GAQDIVVAIPAPGRDHPVLLRSAIHDSHPFQDFLLQVRATVAAAISHSDVPFQRVAEE
                     LGLDPALARIVVADAATISFPADITVKLGEGQEGGLTVAVECCAETVDAATGRPLTAQ
                     LAHVLAVVAADPGVPLGRIDILPAAQRRQLLIEWNDTDRDIIPATFPELFEAQVARTP
                     DAPALVFGGASQNGVTDKEALPQQSSLSYADLETRANRLAHLLIARGAGPDRVVALAL
                     PRSADIVITQLAVLKAGAAFLPVDPAYPAERITFMLADARPVSVVTRRDVAAVLPALE
                     SAPVLIVDELAAVTELAMMPDHAPTDADRLARLVPAHLAYVIYTSGSTGRPKGVTVTH
                     AGLASFSAAEVDRYAVTPGDRVLEFSSPSFDASVLELCMSLPAGAALVVPPPGPLLGE
                     QLAEVLADRRVTHALIPPAALATLPAATASGLPHFRTLIVGGEACSGELVDRWAPGRR
                     MVNSYGPTESTVVSTWTGPLSPGPLSSSPAPPIG"
     gene            complement(1856..3268)
                     /locus_tag="VF788_17010"
     CDS             complement(1856..3268)
                     /locus_tag="VF788_17010"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX8935839.1"
                     /translation="MDCNFPRSDTGAAPSADPDWLAATLAELADTHHVPGAQLAVHRG
                     GVTVAVEIGEQEHGSGIPLTTETAFPTGSLCKVATATLAMILVGDGDLELDAPLEEHL
                     PELDGLGSELTLSQLLSHTSGLPSSPDTQEWPALSLGRYVRKHCGWQNLILPPGSAFS
                     YSNLNYVVIGHLIETITRMNWSEAVESILLRPLGIEATMVGAMVRTLFGRPIATGHSV
                     NAATGRTRPVEQSIVPAEAPGVGLAMSAVDLVALGRMHIVSGFPELLPAAHAEQMRQA
                     IPGVEPFGLADGWGAGLAVFQGETTTWVGHDGNANGTSCYLRIDPANEYVLALTTNAN
                     TGSSMWEELRSKTGLANPTLSRYQSDGSFLTVASPAEFVGSYVNGPTEFFVTAGDEGG
                     LFLEIGGELVARLAFYDDRDFLIQDPISGQGHQIGRFLRDSITQQVECVQIGGRLAPR
                     RGLAVPEARSSSESVSRVSV"
     gene            complement(3453..4130)
                     /locus_tag="VF788_17015"
     CDS             complement(3453..4130)
                     /locus_tag="VF788_17015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8935840.1"
                     /translation="MTGAQVRVLIADDQALLRGSLRVLIETEPDLVVVGEAGNGAEAV
                     EQVQACHPDVVLMDVRMPVMDGIEATRRITVDEHAPKILVLTTFDLDEYVYSALRAGA
                     SGFLLKDTPPAQLLEAVRVVASGEALLAPTVTRRLIAEFIRQPTSARRPARTLTGITD
                     REREVLTLIARGLCNSEIEHHLHLSRGTVKTHIGRLLAKLEARDRAQLVIVGYETGLV
                     GATPTKE"
     gene            complement(4127..5260)
                     /locus_tag="VF788_17020"
     CDS             complement(4127..5260)
                     /locus_tag="VF788_17020"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX8935841.1"
                     /translation="MIDLLTVVTITLLTAFSTLNTVVESSSGILVVVWIMSLALSLPL
                     ALRRRRPIPVFGVVLAMAVVAVLLGMSVSVTMLPIAVALYSVALWIRPLRSATALGIA
                     LLTITLSAVLAATVLDISSRVVTPKPQYADLLSSLISSWLTIGAGWTLGRSTRARRKY
                     ADQLAEHRARQAVSEERLRIAREMHDVVAHSMSVVVMKAAVANHVYETRPGESREALG
                     VIESVSRAALADIHRVLGSLRSAGDAELEPSPGLDELPKLVENARLADVEVELDRGSI
                     PALPAAVQLSAYRIVQEALTNVIKHAAAPVRCTVRISAELGELQLAVIDDGMPRGPVG
                     SPGHGLIGMRERAALHHGTLVAGRQPEGGFAVHARLPYEPGPA"
     gene            5409..6332
                     /locus_tag="VF788_17025"
     CDS             5409..6332
                     /locus_tag="VF788_17025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8935842.1"
                     /translation="MCDISSTVSITGVIEVRELIKDYGPKRALNQLSFTAQPGMVTGV
                     VGPTGSGKSTTLRIILGLDAPTSGTALVNGVGHPAIDRPMQAVGALLNAEALEGECGS
                     VDHLRFLARNNGIGRHRVTDVLEEVGLSDVATQRIGDLSLGMRQRLGIARALLGDPGV
                     LLFDEPMRGLDPEGIQWIRDLMQSLADQGRTVLVSSAHLSEMAVTADQLLIINRGKLI
                     MEAATGELIERFQRDVMVRSPRRNGLARVLTSMGATVRTESDGGLSVIGMDSWRIAAA
                     AAEHHIPIQELTPRSGSLEDFYHELTSANVG"
     gene            complement(6341..7012)
                     /locus_tag="VF788_17030"
     CDS             complement(6341..7012)
                     /locus_tag="VF788_17030"
                     /inference="COORDINATES: protein motif:HMM:NF021057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02391 family protein"
                     /protein_id="HEX8935843.1"
                     /translation="MIFFTTYVTIFRRNDERTERGRGTPARVEGSTIRLPAGTDVQVG
                     DLLEHRSPADEPQRMVVIDAVHPHMLGASKDDDHIELTCAPLERVQVSRAMAPALHPA
                     MSGAVSLLEGGRMVEAICEALRLVEERVESLVPSEDSGHVLMESVFGSTPPKLNITTA
                     TGGQAAADEREGFRHLFVGAMLGLRRPHAAGAAVPAGSDEALEYLAVASMLMRRLDRA
                     ASRLG"
     gene            complement(7230..8216)
                     /locus_tag="VF788_17035"
     CDS             complement(7230..8216)
                     /locus_tag="VF788_17035"
                     /inference="COORDINATES: protein motif:HMM:NF014312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEX8935844.1"
                     /translation="MLVPLLAVTTAATVVGGVSTAVAADNPNPNVVVGGDPQGVAVDP
                     DGKHAYVASYADNALRVIDTSSQRVVGSIHVGANPLGVAVDPDSRHAFVTNFSENSVS
                     VIDTASGKLIKNVPVGQNPASVTVFPRDHYAFVTNSYGNTLSVINSKDLKVVGVVPVG
                     VHPDGVAIDPRGQFAYVANSGSNTVSVIDIHTQKLVRSILVGRAPQKVAIDPDGRHIY
                     VTNFGDHTVSVIDAPSQLDLDYVQSLLKLKVNNTIPVGINPRGLAVAPDSHHAFVVNV
                     GEDTMSVIDTATGTVISTSYVGYSPDQVAVAPDSTAYITARGDGTVTVIRRP"
     gene            complement(8429..>9284)
                     /locus_tag="VF788_17040"
     CDS             complement(8429..>9284)
                     /locus_tag="VF788_17040"
                     /inference="COORDINATES: protein motif:HMM:NF023326.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HEX8935845.1"
                     /translation="YQHEQAGHLITAYPALVDEGDAVALALLPSEAEQQRAMWEGTRR
                     LLLLAVPGLIKSVQRTLDQRARLVLARNPDGSVEALLADCAACAADALITACGGPPHD
                     EDGFAALADRAHAELAGAVRDVIAHVLRILELAHTVEARLAEFTAPALAPAVADIRAQ
                     LANLFEPAGRAGNQPPAGNRIPGFVTATGAQRLPDLTRYVQAIARRLDKLRLNLDRDR
                     GWMHRIATVTQSYQQLRDELGDSSDLHRIRWMIEELRVSYFAQELRTPYPVSDQRIYQ
                     AMAAARGQ"
BASE COUNT         1655 a         3037 c         3011 g         1581 t
ORIGIN      
        1 ggccgatcgg cggcgctggg ctcgaggaca gcggacccgg ggacagcggc ccggtccagg
       61 tcgacaccac ggtcgattcg gtcggtccat acgaattgac catccggcga ccgggggccc
      121 agcggtcgac cagctcaccc gaacatgcct cgccaccgac gatcagggtc cggaagtgcg
      181 gtaacccact cgccgtcgcg gccggcagag tggccagtgc agccggcggg atcagtgcgt
      241 gcgtcacccg tcggtccgcg agcacctcag ccagctgctc acccagcagc ggccccggcg
      301 gcggcacgac cagcgctgcc ccggccggta gcgacatgca caactccaga accgaggcgt
      361 cgaaactggg cgaggagaat tccagcaccc ggtctcccgg cgtgacggcg taacgatcca
      421 cttccgcggc ggagaagctg gccagtcccg cgtgggtgac ggtcacgccc ttcggtcgtc
      481 ccgtcgagcc cgacgtatag atgacgtagg cgagatgtgc gggaaccaaa cgagcgaggc
      541 gatccgcgtc ggtcggcgca tgatccggca tcatggccag ctctgttacc gccgccagtt
      601 cgtcgacgat cagcaccggc gcgctctcga gcgccgggag caccgctgcg acgtcgcgtc
      661 gggtcacgac cgacaccggt cgtgcgtcgg ccagcatgaa ggtgatccgt tcggccgggt
      721 aggccggatc caccggcagg aaggcggcgc ctgccttcag caccgcgagc tgggtgatga
      781 caatgtccgc cgagcggggc aaggcaagcg ccacgacccg gtctggacct gcaccccggg
      841 cgatcaggag atgggctaac cggttggcgc gggtctccag gtcggcgtag ctcagtgacg
      901 actgttgcgg taatgcctcc ttgtcggtta ccccgttctg ggatgccccg ccgaacacga
      961 gtgctggcgc gtccggggtc cgggcaactt gggcttcgaa caactccggg aacgtggccg
     1021 ggatgatgtc tcggtcggtg tcattccatt cgatgagcag ctggcggcgc tgcgccgcgg
     1081 gcaggatgtc gatcctgccc agtggcacgc caggatcggc ggcgacgacc gcgagcacgt
     1141 gcgcgagctg cgcggtcagg ggccgccccg tcgctgcatc gactgtttcc gcgcagcact
     1201 cgacggcgac agtaagacca ccttcctgcc cttcgccgag cttgaccgtg atgtcggcgg
     1261 gaaatgagat ggtggccgcg tccgccacca cgattcgcgc aagcgcgggg tccaggccca
     1321 actcctcggc cacgcgctgg aacgggacat cggagtggct gattgccgct gcgacggtgg
     1381 ctcgcacctg gagcagaaag tcctgaaatg ggtgcgaatc gtgtatggcg gagcgcagca
     1441 gaacggggtg gtcccgaccc ggggcgggaa tggctaccac aatgtcctgc gctccgctgt
     1501 ggcgtgccag aacaatttga cagaccgcca ccgcaaggcc gagcaacgtg acgtcgagct
     1561 gggagctcaa tacgcgtagt tgcgcggtca cttctcgtga gactgcgcag gcatatgttc
     1621 cggtgcccgt ggaactgcca gttggccgca tcgaccgggc gggccactcg ggcaactgca
     1681 cgccgtgcag ttgcctggtc cagtacttga gttcgttggc gaacgacacc tccggtgcgc
     1741 cgcggggggc gggaacggcg ggggttccgg ccagcacggg catcggctcg taagccacca
     1801 ttctatgtcg aatcctccgc gctcgatgtg gcgataagtg gatccagctc aggcgtcaga
     1861 cggatacccg gcttacagat tcggatgacg atcgagcttc cgggacggcg agcccgcgcc
     1921 gcggagccaa ccggccgccg atctgcacac actcgacctg ctgtgtgatc gagtcgcgca
     1981 ggaaacgccc gatttgatgt ccctgcccag agatcgggtc ttggatcagg aaatcccggt
     2041 cgtcgtagaa agccaaccgc gcgacgagtt caccaccgat ctcaaggaaa agaccccctt
     2101 cgtcaccggc tgtaacgaag aattccgtcg ggccgttcac atagctaccc acgaactccg
     2161 ccggtgaggc caccgtcagg aacgatccat cactctgata ccgagacagc gtcgggttgg
     2221 ccagaccggt cttgctacgc agctcttccc acatggacga cccggtgttg gcgttggtgg
     2281 tcagggccaa cacatactcg ttcgcgggat cgatgcgcag gtaacacgac gtgccgttgg
     2341 cgttgccgtc gtgaccgacc caggtagtgg tctcgccctg gaacacagcc agaccggctc
     2401 cccagccatc ggcaagcccg aacggctcaa ccccgggaat ggcctggcgc atctgttcgg
     2461 catgcgcggc cggcagcagc tcggggaagc cggagacgat gtgcatcctc cccagggcca
     2521 ccagatcgac ggcactcatc gccaatccca caccgggagc ctcggctggg actatggact
     2581 gctcgacggg ccgggtccgg ccggtagccg cattcaccga gtgaccggtg gcgatggggc
     2641 ggccaaagag cgttcgaacc attgccccga ccatggtcgc ctcgatgccc aggggccgca
     2701 gcaagatcga ctctacagcc tccgaccagt tcattctcgt gatcgtttcg atcaggtgac
     2761 cgatgacgac gtagttcagg ttggagtacg agaaggcgct tccgggcggc aggatcaggt
     2821 tctgccagcc acagtgcttg cgcacatagc gccccagcga cagggccggc cactcttgtg
     2881 tgtcgggact tgacggtagc ccgctggtgt ggcttagcaa ttggctcagc gtaagttcgc
     2941 tcccgaggcc atccagctcg ggcagatgct cctccagcgg ggcgtcgagc tcgagatcac
     3001 cgtccccgac caggatcatc gccagtgtcg cggtcgccac tttgcagagc gacccggtgg
     3061 ggaaggcggt ctcggtcgtg agggggattc ctgagccgtg ctcctgctca ccgatctcga
     3121 ccgcaactgt caccccaccg cggtggacgg cgagctgagc accgggaacg tggtgcgtgt
     3181 cagccagttc ggccagcgtg gcagccaacc agtccgggtc agcagacggc gcggcacccg
     3241 tatcactcct cgggaagttg cagtccaccg gagctaccct gatggagtga agttcgccct
     3301 ttttgctgac aataggtagg ttgcgtgtcg cagtccgtcc catgcatcac acgttagagt
     3361 ggaacccttc gaagggtctt agggtgtggt taaggcgact atgcggtcgg cgctccaact
     3421 tcgacagacc aacacaagcc gctaccggcc gactactcct tcgtcggggt ggctccgacc
     3481 aggccggtct cgtaccccac gatcaccagt tgcgcccgat ccctggcctc gagcttggcg
     3541 agcagcctgc cgatgtgtgt cttgacggtc ccccggctca ggtgcaggtg gtgttcgatc
     3601 tcgctgttac agagtccgcg ggcgatgagg gtaagcactt cccgctcacg gtcggtgata
     3661 ccggtcagcg tgcgggcggg tcgccgggcc gacgtcggct gccggatgaa ctcggcgatc
     3721 agccgccggg tgacggtggg agcgagcaac gcttcgccgg aggcgaccac ccgcaccgcc
     3781 tccagtaact gggcaggggg ggtgtccttg aggaggaagc cactggctcc ggcccgcagc
     3841 gcggagtaca cgtattcatc cagatcgaat gtggtgagga ccagaatttt tggggcgtgc
     3901 tcgtcgacag tgattcttct ggtggcctcg attccgtcca tgaccggcat gcgcacatcc
     3961 atcaacacca catcggggtg acatgcctgg acctgttcaa cggcctcagc gccattacct
     4021 gcttcgccga cgaccaccag gtccggctcg gtctcgatga gcacccgcag gctgccccgg
     4081 agcagcgcct ggtcgtcggc gatcaggact cggacctgag caccggtcat gccggccccg
     4141 gctcgtacgg aaggcgggcg tgcacggcga aaccaccctc cggttgccga cccgccacca
     4201 gggttccgtg gtgcagcgcg gcccgttcgc gcatgccgat caagccgtgc ccgggactgc
     4261 cgaccggacc gcgtggcatg ccatcgtcga tcaccgctaa ctgcagttcg cctagctcgg
     4321 cactaatccg gaccgtgcac ctcaccggcg ccgctgcatg cttgatgacg ttggtcagcg
     4381 cctcctgcac gatccggtac gcggagagct ggaccgcagc gggcaacgcc ggaatgctcc
     4441 cgcggtccag ctccacctcg acgtcggcga gtcgagcgtt ctcgaccagt ttcggtaact
     4501 cgtcgaggcc agggctgggc tccagctcgg cgtcccccgc cgaccgcaac gagccgagca
     4561 cgcggtggat gtcggcgagc gcggcccggc tcacggactc gatgacaccg agtgcctccc
     4621 ggctctcccc cggccgtgtc tcgtacacgt ggttggccac cgccgccttc atgacgacca
     4681 cactcatgct gtgcgccacc acgtcgtgca tttccctggc gatccgcaac cgttcctcgg
     4741 acacggcctg ccgcgcacgg tgctcggcga gctggtcggc gtacttgcgg cgcgcccgag
     4801 tgctgcgccc gagtgtccag cctgcgccga tggtgagcca tgaagaaatc agtgaggaca
     4861 gcaggtcggc gtactgcggt ttcggtgtga caacccgcga gctgatatcc agcaccgtcg
     4921 cggcgagcac ggctgacagt gtgattgtta gtaacgcgat acccagggcg gtggctgagc
     4981 gcagcggacg tatccatagc gcaaccgaat agagcgcgac cgcgataggc agcatggtta
     5041 ccgacaccga catgcccaac agcaccgcga cgaccgccat ggcgagcacg acgccgaaca
     5101 ctgggatggg cctacgcctg cgtagtgcga gtggcaggct gagtgccagc gacatgatcc
     5161 acaccaccac caggatcccg ctggaggact caaccacagt gttgagggtc gagaaggcgg
     5221 tgaggagagt aatcgtcacc accgtaagca ggtcgatcac gacacgctgc cagggacgtg
     5281 gtcggaacca cggcgacaac acgccggaac cgaccccagc ggcctcggtc acgttcacaa
     5341 cggtagccgc aacccccggc tcgacgcatc ggagcagggt ccgatgccca accccggacc
     5401 ctgctccgat gtgtgacata tcctcaaccg tcagtattac tggtgtgatc gaggtacgag
     5461 aactgatcaa ggactacgga cctaagcgtg cgttgaacca gctctcgttc accgcacagc
     5521 cgggcatggt gaccggcgtt gtcggcccga ccggctccgg gaagtccacc acactgcgca
     5581 tcatcctcgg tctggatgcc ccgacgtccg gtactgcgct ggtgaatggt gtcggccacc
     5641 ccgccatcga ccggccgatg caggcggtgg gggcgctgct caacgcggaa gcgttagagg
     5701 gtgaatgcgg ctccgttgac cacctgcggt tcctcgcgcg caacaatgga attggccggc
     5761 accgggtaac cgacgtcctc gaggaggtgg ggctttccga cgtggccacg cagcggatcg
     5821 gcgatctctc gctcggcatg cggcagcggc tcgggattgc ccgggcgctg ctcggtgacc
     5881 ccggagtcct gttgttcgac gagccgatgc gtggtctgga cccggagggc atccagtgga
     5941 tccgcgatct gatgcagtcc ttggccgatc aaggccggac ggttctcgtg tccagcgctc
     6001 acctgagcga gatggccgtc accgcagatc aactgctcat catcaaccgt ggcaagttaa
     6061 tcatggaggc cgcaactggc gagttgatcg aacgttttca acgcgacgta atggtgcgct
     6121 cgccccgccg caacgggctg gccagggtgc tgaccagcat gggcgccacc gtgcgcacag
     6181 aatccgacgg tggcctgtcg gtcatcggca tggactcgtg gcggattgcc gcggccgccg
     6241 cggagcatca cataccgatc caggagttga caccgcgcag cggatcactt gaggacttct
     6301 accacgaact gaccagcgcc aacgtcggct aatgcgtcca tcaacccagc ctgctcgcgg
     6361 cgcgatccag gcgccgcatc agcatgctcg ccaccgccag gtactccaag gcctcgtctg
     6421 atccggcagg aaccgcagcc ccagcagcgt gcggccgtcg cagccccagc atggcaccga
     6481 cgaacaagtg ccggaagccc tcccgctcgt cggcagcggc ttgccctccc gttgcggtgg
     6541 tgatgttgag tttcggcggt gtcgacccga aaaccgactc catcagcacg tgaccggagt
     6601 cctcgctcgg gacaagagac tcgacccgct cttccaccaa tcgcaacgcc tcgcagatcg
     6661 cttcgaccat ccgaccgcct tctagcaggg aaacagcgcc ggacatcgct ggatgcaggg
     6721 ccggcgccat ggctctggaa acctgcaccc gctcgagcgg cgcgcaagta agctcgatgt
     6781 ggtcgtcatc cttgctagcg ccaagcatat gcggatggac ggcgtcgatc acgaccatcc
     6841 gttgtggctc atcggccggg gaccgatgct ctaagagatc cccgacctgg acgtccgttc
     6901 cggccggcag gcggatcgtg ctgccttcta cccgggcggg agttccccgg cctcgttcag
     6961 tccgctcgtc attacggcga aatatggtga cgtatgtggt gaagaaaatc atcttacatc
     7021 gacgatctgt ccgttatcgt cactgcctgg catcgcgtcc gtctccccga ccccgtcccg
     7081 tgctaccgcc caacttagat attcagatcg acgatgcgat ccacatcaag tcatctgcgg
     7141 attgatcggg cagcggtacc gcatcgttac agaggtggca acggacaagt gccagctcca
     7201 cacgacgagt gacggcagag agccccccgt cagggacgac ggatcaccgt gacagtcccg
     7261 tctccccgag cggtgatgta cgcagtgcta tcgggagcaa ccgccacttg gtcgggcgag
     7321 taaccgacgt acgaagtgct gatcactgtc ccggtagcgg tgtcgatcac gctcatcgtg
     7381 tcttcaccga cgttgaccac gaaggcgtgg tggctatcgg gggctactgc caagcctcgg
     7441 gggttgatac ccacaggaat ggtgttattg accttgagct tgaggagaga ctggacgtag
     7501 tcgaggtcga gctgactcgg cgcgtcgatc acactcacgg tgtgatcacc gaagttggtc
     7561 acgtaaatgt gccgcccgtc gggatcgatg gccaccttct gcggggcccg accaacgagg
     7621 atggaacgca ccaatttctg ggtgtggatg tcgatcacgc tgaccgtatt gctgccgctg
     7681 ttggccacgt acgcgaactg gcctcgcggg tcgatcgcca ccccgtcggg gtgaacaccg
     7741 acgggcacga caccgacgac cttgaggtct ttgctattga tcacactcaa ggtgttgccg
     7801 taggaattgg tgacgaaagc atagtgatca cgcgggaaaa ccgtcacgct agccggattc
     7861 tgaccgaccg ggacgttttt gatcaatttc ccgctggcag tgtcgatcac gctgaccgag
     7921 ttttcggaga aattggtcac gaaggcgtgc ctgctgtcgg gatcgaccgc caccccgagc
     7981 ggattggctc cgacgtgaat gctcccgact accctctggc tggaagtatc gatcacccgc
     8041 agagcgttgt cggcgtagct ggccacgtag gcgtgcttgc catcggggtc gaccgccacc
     8101 ccttgcggat caccgccgac gaccacgttc gggttcggat tgtccgccgc aacagcagtg
     8161 ctgaccccac ccaccacggt ggccgcggtg gtgacggcca gcagcggtac gagcaccgca
     8221 gtccaccgtc gagacccgcg ccggacccgg ctgactggct tgctcttccg gtgcctgcct
     8281 gcggatcgga tcgtcatacc gctcgctctc cccttacttg cccatgcaca gcgacgccac
     8341 acggagtaac gacggtgacg ctcatccgtt tcgcccccac cgaggagata cgcctgaacc
     8401 cggacagatc accggatcgt gaacgcgctc actggccccg agcggcggcc atggcttggt
     8461 agatgcgctg gtcggaaacg gggtaagggg tgcgcagctc ttgcgcgaag tagctcaccc
     8521 ggagctcctc gatcatccag cggatccggt ggaggtccga gctgtcgccg agctcgtctc
     8581 gcaactgctg gtagctctgc gtgacggtgg cgatccggtg catccagcct cggtcgcgat
     8641 cgagattcag gcgcagtttg tccagcctgc gggcgatcgc ctgcacgtag cgagtgagat
     8701 cgggcagtcg ctgcgcgccg gtcgcggtca cgaaacccgg aatccgattg ccggcgggag
     8761 gctgattgcc ggctcggccg gcgggctcga acaagttggc cagctgggct cgaatgtcag
     8821 cgaccgcggg cgccaatgcc ggcgcggtga actcggccag gcgtgcctcc acggtgtgcg
     8881 cgagttccag aatgcgtaga acgtgggcga tcacatcgcg caccgcgcca gccagttcgg
     8941 cgtgagcacg gtcggccaat gcggcgaagc catcctcgtc gtggggaggt ccaccgcagg
     9001 cggtgatcaa cgcgtcagcg gcacaggcgg cgcagtctgc gagcaacgct tcgacgctgc
     9061 cgtccggatt acgtgccagc accagcctgg cccgctggtc gagggttcgc tgcaccgatt
     9121 tgatcagccc gggcactgcc aggagcagca gccgccgggt gccctcccac atggcgcgct
     9181 gttgttcggc ttcgctgggc agcagcgcga gagcaacggc gtcgccctcg tccaccagcg
     9241 ccgggtaagc ggtgatcagg tggccggcct gctcatgctg gtag
//
LOCUS       DASVXZ010000801         2069 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1033645, whole genome shotgun sequence.
ACCESSION   DASVXZ010000801 DASVXZ010000000
VERSION     DASVXZ010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1033645"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..1341)
                     /locus_tag="VF788_17045"
     CDS             complement(79..1341)
                     /locus_tag="VF788_17045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009072274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8935846.1"
                     /translation="MDRRDKILEVFCGIDWAEAHHDVALINGEGTLIAKRRISDDAAG
                     FAALIMLLADAGDSAEDPIPVAIETSRGLLVACLRATGRKVYAINPLAVSRYRDRYSV
                     ARKKSDAGDALVLANILRTDLAAHRPLPADSELAQAIAVLARAHQDAVWERTCAHNKL
                     RSLLREYYPALLNAFTDQRGGLLRPEARALLAAAPTPRAAAQLTITQLATLLRHAGRH
                     RGIDTEAARLQQILHTEHLHQLPLVEDAFGRQALALLRALDTAATNAEDLAAATIEHF
                     DKHPDAEIITSLPGLGSLTGARVLAEIGDDRSRFTNARSLKAYAGSAPVTRASGKSLT
                     VTHRKVKNQRLAAAGYLWAFSALTASPGARTHYDQRKTTGDRHTATQRNLFNRLLGCL
                     YHCLQTRQHYNEQIAFPTTHTNSTNAAA"
     gene            complement(1805..1930)
                     /locus_tag="VF788_17050"
     CDS             complement(1805..1930)
                     /locus_tag="VF788_17050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935847.1"
                     /translation="MRETLSGLSNLLLIHRCTQLDIDTPQDTTSAAAYTLRLMGM"
BASE COUNT          307 a          609 c          764 g          389 t
ORIGIN      
        1 cggcgccgaa taacttacgg caggcccctg gcctgccggc gatagccggc cgaggagaca
       61 tcccacgcgg ttagcttgtc aagctgcggc gttggttgag ttggtgtggg tggtggggaa
      121 tgcgatctgt tcgttgtagt gctgtcgggt ttgcaggcag tggtataggc agccgaggag
      181 tcggttgaac aggttgcgtt gggtggcggt gtggcgatcg ccggtggttt tgcgttggtc
      241 gtagtgggtt cgtgcgccgg gtgaggcggt cagggcagag aaggcccaga ggtagccggc
      301 ggcggctagg cgttggttct tgactttgcg gtgggtgacg gtgaggcttt tgccgctggc
      361 tcgggtcacg ggtgcgcttc cggcgtaggc cttgagtgat cgggcgttgg tgaagcggga
      421 tcggtcgtcg ccgatctcgg cgaggacccg ggcgccggtg agagatccaa gtcctggcag
      481 gctggtgatg atctcggcgt ccgggtgctt gtcaaaatgc tcgatggtgg cggcagcgag
      541 gtcttcggcg ttggtggcgg cggtgtcgag agctcgcagc agggcgaggg cttggcggcc
      601 gaaggcgtct tcgaccaggg gcagctggtg gagatgttcg gtgtgcagga tctgctggag
      661 ccgggcggct tcggtgtcga tgccgcggtg gcggccggcg tggcgcagca gcgtggcgag
      721 ctgggtgata gtcagttgtg cggctgctcg cggggtgggg gcagcggcca gcagggcccg
      781 cgcctcgggg cgcagcagcc cgccgcgttg gtcggtgaag gcgttgagca gggctgggta
      841 gtactcgcgc agcagcgagc gcagcttgtt gtgcgcgcag gtgcgttccc agacggcgtc
      901 ttggtgggcc cgggcgagca cggcgatggc ctgggcgagt tcggaatcag cgggcagcgg
      961 ccgatgggcg gccaggtcgg tgcgcaggat gttggccagc accaatgcgt cgccggcgtc
     1021 ggatttcttg cgcgccaccg agtaccgatc ccgataccgg gacaccgcca gcgggttgat
     1081 cgcatagacc ttccgcccgg tggcgcgcag gcaggcgacc agcaggccgc ggctggtctc
     1141 gatcgccacc gggatcggat cctcagcact gtccccagcg tcggcgagca gcatgatcag
     1201 tgcggcgaag ccggccgcgt cgtcgctgat ccgccgcttg gcgatcagcg ttccctcgcc
     1261 attgatcagg gcgacgtcgt ggtgggcctc ggcccagtcg atgccacaaa acacttccaa
     1321 gatcttgtcc ctcctatcca tcgtcgagat ctggttcccg ggtccaagcc ggtccgggac
     1381 acgcacgctc cctaatggca gggctccctt ggcccgacat cccaccagcg gttcgtgacc
     1441 ccagcacacc gccagggccc tcggtctacc cgcggagctc tcccgctccc cttggtgatc
     1501 agagatgatc cctgccagcg gctcgaacca cgacatgatc agcacccggt atcggctaat
     1561 cacgacgaca cgccgaggtc acccaccagc tgccatgctc ttctcgaatg cggaagtgtc
     1621 gggccgtgtc ggtctcctcg aaggactccg cggacacgtc gcagggaaga catcggcccg
     1681 gcaccccacc accaccgccg tggagaaccc gagattcccg gaaagcgcca gtcttccaaa
     1741 ggcactccca agtgctgatc gggcaaaggc gtcccacccg gaaaaccccg atgtctccac
     1801 agccctacat gcccattagt cgcagggtgt aggcggcggc gctggtggtg tcctgcggtg
     1861 tgtcgatgtc tagttgggtg cagcgatgga tgagcagcag gttgctcagt ccggagagtg
     1921 tttcgcgcaa ctgggggtcg gctgcgatga gcacggctct ggggttggtt gatcgtctgg
     1981 gtacgggcct tgacggccga tgccttggcc agcttgaaca tgcgcagcat ttccactggc
     2041 ccgtcaccgg ccttggctgt cgcgctgac
//
LOCUS       DASVXZ010000802         2806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1034066, whole genome shotgun sequence.
ACCESSION   DASVXZ010000802 DASVXZ010000000
VERSION     DASVXZ010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2806
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1034066"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2210)
                     /locus_tag="VF788_17055"
     CDS             complement(<1..2210)
                     /locus_tag="VF788_17055"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018334401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEX8935848.1"
                     /translation="MTLTARHEAGGTGRLDSIAAHAGVISESQHQELRADIRLLSTLL
                     GETLIRQGGEELLKLVEQVRGLARVAPQEGSAEIRSLLSTLDIGTAVQLARTFSTYFQ
                     LANVAEQLHRSHEQRAQVGGQRGPLRAVLDRLVREVDRAEVEAVLARIELRPVFTAHP
                     TEASRASVQGILRRVAEVLEQNLPDEQVQRRLARLVDLLWQTDEIRPGRPTVLDEARA
                     VTYYLEQLGTCAVPELLEDLEEELARAGFVLPPRSRPVALGCWVGGDRDGNPNVSPQV
                     TLDVLGLYADRALDIQLALMEQLVQELSVSTRVVGVSEALRCSLASDRRQLPEVYDRY
                     IRLNAEQPYRLKCSYIHARLTRTQQRIRDGLAHLPGRDYLGAEAYITDLEVMDASLRA
                     HLGERIAEGTLARTLRGARALGLHLAALDVREHAERHHAALAALYDPLDELAASYLEL
                     DRRQRTALLSGELAGRRPLTSRSGELPAGAADVLAVFDTIRSAQQTFGEAAASTYIVS
                     MTKGVDDLLAVAVLAREAGLIVVAPSGQECTSRVDLVPLFETATELRCAGELLDEMLR
                     DPSYRQLVRVRGNLQEVMLGYSDSNKDAGITTSHWVIQRAQRQLRDTAAAHGVRLRLF
                     HGRGGSVGRGGGPAGEAVAASPYGTVDATLKVTEQGEVISDRYSLSALAHQQLEILLA
                     AVLEATLLHQTSRVPAEVLGRWDEAMDVVSSAAHAAYREFVGLPGLSEFFSAATP"
     gene            2565..>2806
                     /locus_tag="VF788_17060"
     CDS             2565..>2806
                     /locus_tag="VF788_17060"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016336979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8935849.1"
                     /translation="MARNQDVVVIGGGIAGVSIAYELAAHCQVTLLETETSLASHSTG
                     RSAAMYMPGHGGPLVRPLINASRPRFASLAEDLGAPV"
BASE COUNT          465 a          972 c          917 g          452 t
ORIGIN      
        1 ggagtggcag cagagaagaa ttcactgagc ccgggaaggc ctacgaactc gcgataggcc
       61 gcgtgggctg ccgagctgac cacgtccatt gcctcatccc agcgacccag tacctccgcg
      121 ggcacccgcg aggtctgatg cagcagggta gcctccagca ccgcggccag caggatctcc
      181 agctgctggt gagccagcgc gctcagcgag taccggtcgg agatcacctc gccctgctcg
      241 gtcaccttca gcgtcgcgtc gaccgtgccg taaggggagg cggccacggc ctccccggcc
      301 ggcccaccac cccggccgac cgagccgccg cggccgtgga acaggcgcaa ccgcaccccg
      361 tgcgcggcgg cggtgtcgcg aagttgacgc tgcgcccgtt ggataaccca gtgggacgtg
      421 gtaatcccgg catccttgtt ggagtcggag tagccgagca tcacctcttg caggtttccc
      481 cggacgcgca ccagctgccg gtaggagggg tcccgcagca tctcatcgag cagttccccg
      541 gcgcagcgca gctccgtggc cgtctcgaac aacggtacga gatccaccct ggacgtacat
      601 tcctgccccg agggagccac cacgatcagt cccgcttccc gggccagtac cgcgacggcc
      661 agtaggtcgt ccacgccctt ggtcatcgaa acgatgtagg tgctggcggc ggcctcgccg
      721 aaggtctgct gggcagaacg gatcgtgtcg aaaaccgcga gcacgtccgc ggcccctgcg
      781 ggcagctctc cagagcggga agtcagcggc cgccgtccgg ccaactcgcc ggacagcagc
      841 gccgtccgct gcctgcgatc gagctcaagg taggacgctg caagctcatc aagcgggtcg
      901 tagagggcgg cgagggcggc gtggtgccgc tcggcgtgct cccgcacgtc gagggcggcc
      961 agatgcagtc ccaacgctcg ggcgccgcgc agcgtcctgg cgagggtgcc ctcggcgatg
     1021 cgttccccga gatgcgcgcg caacgaggcg tccatcacct ccaggtcggt gatgtaggcc
     1081 tctgcaccta ggtagtcccg tcccgggagg tgcgcgagac cgtcgcggat ccgctgttga
     1141 gttcgggtca accgggcatg gatgtaggaa cacttcagcc ggtagggctg ctcagcgttg
     1201 agcctgatat agcggtcgta gacctcgggc agttgacgcc ggtcgctggc aaggctgcag
     1261 cgaagtgcct cggagacacc aaccactcgg gtggacacgc tcaactcctg gacgagctgc
     1321 tccataagcg ccagctggat gtccaacgct cgatccgcat acaaacccaa gacgtcgagg
     1381 gtcacctgcg gtgagacgtt cgggttgccg tcacggtcgc cccccaccca gcagccgagc
     1441 gccaccggac gggaccgtgg aggcagcacg aatccggccc tggcaagctc ttcctcgagg
     1501 tcctccagca gctccggcac cgcgcaggtc cccagttgct cgaggtagta ggtgaccgcg
     1561 cgggcctcgt ccagaaccgt tggccggccg ggtcggatct cgtcggtctg ccacaacagg
     1621 tcgaccagcc gtgcgagtcg ccgttgcacc tgctcgtcgg gcaggttctg ctccaggacc
     1681 tcggccaccc ggcgcaggat tccctgcact gacgcgcggg aggcctcggt ggggtgagcg
     1741 gtgaacaccg gccgcagctc aatccgggcc agcaccgctt ccacctcggc ccggtcgact
     1801 tcccggacca gccggtcgag caccgcgcgc agcggcccac gctgcccgcc gacctgggcg
     1861 cgctgctcgt gggaccggtg cagttgctcg gccacgttgg cgagctgaaa gtacgtggag
     1921 aatgtccggg caagttgcac ggccgtgccg atgtccagcg tggacagcag cgatcggatt
     1981 tcggcgctgc cctcctgcgg tgccaccctg gccagtcccc gaacctgctc gaccagcttg
     2041 agcagttctt caccgccttg gcggatcaag gtctcaccaa gcagcgtcga caacaggcgg
     2101 atgtcggctc gtagttcctg atgctgagat tccgagatga cgcctgcgtg tgcggcgatc
     2161 gagtccagcc gcccggtgcc acccgcctcg tgtcgagctg tcaaggtcat cggctgcccc
     2221 tcctcccaca gcgtcgggca cgattggtca gacgggctcg agcgcagtag cggtggttac
     2281 tcggcgagtg cactcagtgg tattccagca gcggggctcc ataccgccgt tacgtccagc
     2341 tcgatgtcgt gcaacagccc cggtcggcgg ccgacacatc tacatcaccg atggtcacac
     2401 gccaggagcg ccttcccaag cacagcgccg caagcttttc ccgctgttaa cagcttttcc
     2461 ctactgccac gaggaagcgt cccgaaagtg ccatttcacc caatcacctc ccgttgagcc
     2521 tcgagcaatg tcgactagct ggtggttcgt atagcgtcga tcgagtggcg cggaaccagg
     2581 acgtggtggt gatcggcggc ggaatcgccg gcgtctcgat tgcctacgag ctcgctgcgc
     2641 actgccaggt caccttgctg gagaccgaaa ccagcctggc cagccactcc accgggcgtt
     2701 cggccgccat gtacatgccc ggccacggtg gcccgctggt gcggccactg atcaacgcga
     2761 gccgcccccg gttcgccagt ttggccgagg atctgggcgc gccggt
//
LOCUS       DASVXZ010000803         3705 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1390445, whole genome shotgun sequence.
ACCESSION   DASVXZ010000803 DASVXZ010000000
VERSION     DASVXZ010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3705
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1390445"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1091
                     /locus_tag="VF788_17065"
     CDS             <1..1091
                     /locus_tag="VF788_17065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HEX8935850.1"
                     /translation="LLEGAADDDFDSAAADIEIGVFTRLTGELATAFRQASGELLYGF
                     AEHRLETTWLASSTGLRRRWVQPTGTVELNGKIVDDLARSAWAGAYTADFTDLDFTAL
                     VAEVRRRLSWSQRQVELPAGRYETILPSSAVADLMLDMVWSMDGRPAHEGRSAFAAPG
                     DRSGATRIGERFTDLPLTLFSDPAAPGLQTAPFLVTSASGDSVSVFDNGAPMHRVDWL
                     REGTVNALTYPRAAAQELGGQFTPPPENLLLTGGSAASIDELVARTNRGLLLTCLWYI
                     REVDPVSLLLTGLTRDGVYLVEDGAVVGQVNNFRFNESPIDLLHRVTEVGATERTLCR
                     EWKDWFSRTAMPTMRIPDFNMSSVSQAS"
     gene            1296..1544
                     /locus_tag="VF788_17070"
                     /pseudo
     CDS             1296..1544
                     /locus_tag="VF788_17070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677679.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
     gene            1924..>3705
                     /locus_tag="VF788_17075"
     CDS             1924..>3705
                     /locus_tag="VF788_17075"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016338242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017076 - purine nucleotide binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (GTP)"
                     /protein_id="HEX8935851.1"
                     /translation="MTAMIVPGLDDAPTSHSRLRDWVRETAELTMPDRIEWCDGSQQE
                     WERLTAALVEVGTFARLGRKPNSFWAASDPSDVARVEKRTFICSQTEQDCGPTNNWMA
                     PDRMKSIMCELYRGCMRGRTMYVVPFCMGPLEDPSPKLGVEITDSAYVVCSMRIMTRM
                     GAGALRKFVRADGSDAEFVSCLHSVGQPLEPGAVDVPWPCNDTKYISHFPEERLIWSY
                     GSGYGGNALLGKKCYSLRIASVMARDEGWLAEHMLILKLTSPEQVVHYVAAAFPSACG
                     KTNLAMLEPTIPGWKAETLGDDIAWLRFGTDGRLYAVNPENGFFGVAPGTSWRTNPNA
                     MRTLCAGNSIFTNVALTDDGDVWWEGIGSSPAHLISWRLEDWTPADGAAGRRGAHPNS
                     RYCTPMEQCPVLAEEWDDPAGVPISAILFGGRRPSTIPLVNEAFDWQHGVFLGATLSS
                     EKTAAAAGTVGQVRRDPMAMLPFIGYHAGDYFQHWINLGKQADASKLPRIFYVNWFRR
                     GSDGDYLWPGFGDNSRILKWIIERIEGRAAAADTAIGRVPTPDQLDLSGLNAEIADVE
                     AALAVNVEEWRAELPLIEQWFGKIGDAL"
BASE COUNT          629 a         1186 c         1252 g          638 t
ORIGIN      
        1 cgctgctgga gggcgcggct gatgacgact tcgactcggc tgcggcggac atcgagatcg
       61 gggtgttcac ccggttgacc ggtgagttgg caacggcgtt cagacaggcc agcggggaac
      121 tgctctacgg cttcgccgaa caccgcctgg agaccacctg gctggcgtcc tcgacggggt
      181 tgcggcgccg ctgggtgcag cccaccggta ccgtcgagct caatggaaag atcgtcgacg
      241 atcttgcccg tagcgcttgg gcgggcgcgt acacggccga tttcaccgat ctggatttca
      301 ccgctctcgt tgccgaggtg cggcgacggc tgagctggtc gcagcgtcag gtggagctgc
      361 ccgcgggccg gtacgagaca atcctgccat cctcggcggt cgccgatctg atgctcgaca
      421 tggtctggtc gatggacggc cggccggcgc acgaggggcg ctcagcgttc gccgctcccg
      481 gcgaccggtc aggggctacc cggatcggtg agcgattcac cgacctgcca ctcacgctgt
      541 tcagcgatcc cgccgcgcct gggcttcaga cagcaccgtt ccttgtgacc agcgcctcgg
      601 gtgactccgt gagcgtcttc gacaacggtg ctccgatgca ccgggtggac tggctgcgtg
      661 agggcacggt gaacgcgctg acctaccccc gagcagcggc gcaggaactc ggaggacagt
      721 tcaccccgcc accggagaac ctgctgctga ccggtggttc cgcagcttct atcgacgagt
      781 tggtggcgcg aaccaaccgg ggattgctgc tgacctgcct gtggtacatc cgcgaagtcg
      841 atccggtgtc gctgctgctc accgggctga cccgggacgg ggtatacctc gtcgaggacg
      901 gtgcggtagt cggccaggtg aacaacttcc ggttcaatga gagcccgatc gacctgctcc
      961 accgcgtcac cgaagtcggc gcgaccgaac gcacgctgtg ccgggaatgg aaagactggt
     1021 tctcccgcac ggcgatgccc accatgcgga tccccgactt caacatgtcc tcagtcagcc
     1081 aggccagcta gccctcggcc agcaccgtca ccagcacgcc gcagggacca ggggcggcta
     1141 tccacggtat cagagccctg attctcgtcc tcattgtggt ggcgaaggtg ctggctgcgc
     1201 ggtgagtcac cgaacggaca tatccccgct cgaccccatc agtctctcca aggacggccg
     1261 ttgtgatcga accaagcgtt gccgaccgcc agcgtgtgca gacgacgtcg catgaggagc
     1321 cgtcctacgc gtacggcacg tcgggtatcc cgctgctccg cgagaccatc ggcgagaact
     1381 tcgaccggat ggttggcgcg cagcccgacc acgaggcgct ggtcgaggtg cagaccggcc
     1441 ggcgctggac ctaccaccag ctcgccgagg aggtagacac tcttgcgctg gggctgctgg
     1501 ccaccgggat cgtcaagggt gaccgtggcg actggcagcc ggactctccc catccccgaa
     1561 atagctgtgt atttgcggta tcacgctgag gcggatccgc ttcttctctc catgcagctg
     1621 ctcgcaagcg ggtggttgtc cagaaggagt gacgagccgt gaaaccggcc cggctgtacg
     1681 acgggcggat cgtcacctcg acgggaccgc cggcacggtg caccaggtat ccgcgcccgt
     1741 cggcagcgcg gcggtttgtg aggaagttct caatcgcaag cgactgttca cgtccgggtt
     1801 taacctggtt aacgatccct tttgatgtcc accgcccgtg caaagcatga ggcggtattc
     1861 ggcattcgcc ggtgaaagcc gtcggacgga tgggggccgg ttggctcact aaggagacgg
     1921 gccgtgactg ccatgattgt tccgggtctc gacgatgcgc cgaccagcca ctcacgactg
     1981 cgcgactggg tgcgcgagac cgccgagctc accatgcccg accgcatcga gtggtgcgat
     2041 ggatcccagc aggaatggga gcggctcacc gcggcgctgg tggaggtcgg cacgttcgcc
     2101 cggcttggcc gcaagcccaa ctcgttctgg gccgcctcgg atccctccga cgtggcccgg
     2161 gtggagaagc gcaccttcat ctgctcacag acggagcagg attgtggccc caccaacaac
     2221 tggatggcgc ccgaccggat gaaatccatc atgtgtgagt tgtaccgggg gtgcatgcgc
     2281 ggtcggacga tgtatgtggt gcccttctgt atgggcccgc tggaggaccc gagtcccaag
     2341 ctcggcgtgg agatcaccga ttccgcctac gtggtgtgtt cgatgagaat catgacgcgg
     2401 atgggtgccg gcgcgctgcg caaattcgtc cgggccgacg gcagcgacgc ggaattcgta
     2461 tcatgcctgc attcggtggg ccagccgctg gaacccggtg cagtcgatgt gccttggccc
     2521 tgcaatgaca ccaagtacat cagccacttt cccgaggaac ggctgatctg gagttacggc
     2581 tccggctacg gcggcaatgc gctgctgggc aagaagtgct attcgctgcg gatcgcctcg
     2641 gtgatggccc gcgacgaggg ctggctcgcc gagcacatgc tgatcctcaa gctgaccagc
     2701 ccggagcagg tcgtccacta tgtcgcggcg gcgttcccgt cggcctgcgg caagaccaac
     2761 ctggcgatgc tcgagccgac cattcccggc tggaaggccg agactctcgg cgatgacatc
     2821 gcctggttgc gcttcggtac cgatggccgg ctctacgcgg tgaaccctga gaatgggttc
     2881 ttcggggtcg cgccgggcac cagctggcgg accaacccca acgccatgcg cacgctgtgc
     2941 gctggcaact cgatcttcac caacgtcgcg ctgactgacg acggcgacgt ctggtgggag
     3001 ggcataggga gtagcccggc acacctcatc tcatggcggc tggaggactg gacacccgcc
     3061 gacggcgccg ctggtcggcg cggtgcacac ccgaactccc ggtactgcac accgatggaa
     3121 cagtgcccgg tgctcgccga ggagtgggac gatccggccg gcgtgccgat ctcggcgatc
     3181 ctgttcggtg gccggcggcc gagcacgata ccgctggtca acgaggcctt cgactggcag
     3241 cacggggtgt ttctgggtgc cacgctctcc agcgagaaga ccgcggcagc agccggcacg
     3301 gtcggccagg tgcgtcgcga cccgatggcg atgctgccgt tcatcggcta ccacgccggg
     3361 gactatttcc agcactggat caacctcggc aagcaggccg acgccagcaa gctgccgagg
     3421 atcttctacg tgaactggtt ccgtcgcgga tccgacggcg actacctgtg gcccggcttc
     3481 ggagataaca gccggatatt gaagtggatc atcgagcgga tcgagggccg ggccgcggcg
     3541 gctgacaccg cgatcggccg ggtacccacg ccggatcagc tcgatctatc cggactgaat
     3601 gccgagatcg cggacgtcga ggcggcgctc gcggtgaacg tcgaggagtg gcgagcggag
     3661 ctcccactga tcgagcagtg gttcggtaag atcggcgacg cgctg
//
LOCUS       DASVXZ010000804         2441 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_945296, whole genome shotgun sequence.
ACCESSION   DASVXZ010000804 DASVXZ010000000
VERSION     DASVXZ010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_945296"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(302..589)
                     /locus_tag="VF788_17080"
                     /pseudo
     CDS             complement(302..589)
                     /locus_tag="VF788_17080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
     gene            complement(597..1973)
                     /locus_tag="VF788_17085"
     CDS             complement(597..1973)
                     /locus_tag="VF788_17085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEX8935852.1"
                     /translation="MKALTGRSAMRSPGAPALRREVERLFWREIAKGLSSEDAAVAVG
                     VSPAAGSRWFRERGGMPLFLVAPVTGRYLSFAEREEIAMLKGQGLGVREIARRVGRDP
                     STISRELRRNAATRGGKLEYRASVAQWKADLLARRPKAAKLVANDRLHQYVQERLSGQ
                     VRRLDGTPLSGPVEQPWKGRNKPRRQDRRWASAWSPQQIAHRLRLDFPDDDSMRISHE
                     AIYQSLFIQGRGALKRELVACLRTGRALRVPRARARQQRAGMVTPEVMISERPAEAAD
                     RAVPGHWEGDLIIGLDRSAIGTLVERTTRFTMLLHLPRMDGYGVEARVKNGPALAGHG
                     AEAVREAIAATITTLPDQLRRTLTWDRGKELAQHAQLSIDTGVQVYFADPHSPWQRGT
                     NENTNGLLRQYFPKGTDLARWSGDDLDAVAATLNNRPRKTLGWKTPAEAMNEQLLSLQ
                     TTGVATTG"
     gene            2086..2331
                     /locus_tag="VF788_17090"
                     /pseudo
     CDS             2086..2331
                     /locus_tag="VF788_17090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611468.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
BASE COUNT          401 a          804 c          779 g          457 t
ORIGIN      
        1 gatccacgcc ttcaacgaga tcgggctgcg tgcgctggac cctaataaga gctaccgggt
       61 tgacgtgagg tcatactcgg gtccggtagc cgccggtggg tgagcactct caggcccagg
      121 acgtcgagtc ctatagacag atcgtgcccc cgctggtggt cgggagacgt gacggctgat
      181 ggatgctcct atgtttgtca agctattgtg agaagatctt gggcgggttg gttgggcggg
      241 tcagggtttt gtagagctcg cgggtgaact tccccccatc gccggacccg aggtttgggg
      301 gtcaacggct gtgatctgat ggggtgtgga gttgttcgaa gtcaaccgga ctgagcattc
      361 cgatgctgga gtggcgtctg gtcgggttgt accagcactc tatccattcg aatatcgcgt
      421 tggcaagttc gtcccgcgaa ttccacgatt tgcggtcgag gacttcgagt tgcagcgttc
      481 cccagaatga ctccatcatc gcattgtcgt agcagtcacc gacgctgccc atcgaaccga
      541 gcagtccggc tttctggagt cgttgcccga acgcccagga cgtgtattgc ccggattcaa
      601 ccggtcgtcg caacaccagt ggtttgaagc gatagtagct gttcgttcat tgcttcggct
      661 ggtgtcttcc aaccgagtgt cttacgtgga cggttattga gggtggccgc gacggcgtcg
      721 aggtcgtcgc cgctccagcg ggccagatcg gtacccttgg gaaagtactg gcggagcagt
      781 ccattggtgt tctcgttcgt gccacgctgc caggggctgt gcggatcggc gaagtagacc
      841 tgcacgccgg tgtcaatact cagctgagcg tgctgggcga gctccttccc gcggtcccag
      901 gtcagcgtcc ggcgcagctg atcgggcagc gtggtgatcg tcgcggcgat cgcttcgcgg
      961 acggcttcgg cgccgtggcc ggccagcgcc gggccattct ttacgcgtgc ctcgacgccg
     1021 tagccgtcca tgcggggcag atgcagcagc atcgtgaaac gggtcgtgcg ctccaccagc
     1081 gtgccgatgg cggaccggtc cagcccgatg atgaggtccc cttcccaatg gcccgggacg
     1141 gcacggtcgg cggcctcggc gggccgttcg ctgatcatca cctcgggggt gaccatgccg
     1201 gcgcgctgct gccgggctcg agcacggggc acccgcaggg cgcggccggt gcgcagacac
     1261 gcgaccagtt cccgcttcaa cgcaccccgt ccctggatga acagagactg gtaaatcgcc
     1321 tcatgcgaga tgcgcatgga gtcatcatcc gggaaatcga gcctgagccg gtgagcgatt
     1381 tgctgcgggc tccacgcgct ggcccatcgc cggtcctggc gccgaggttt gttgcgtcct
     1441 ttccacggtt gctcgaccgg cccggatagt ggtgtcccat ccaggcggcg gacctggcct
     1501 gagagccgct cctgaacgta ctgatgcagc cggtcgttgg cgaccagctt cgccgccttc
     1561 ggacgtcggg ccagcaggtc tgctttccac tgcgccaccg acgcccggta ttcgagcttg
     1621 ccgccccggg tcgccgcgtt gcggcgcagt tcccgcgaga tcgtcgaggg atcacggccc
     1681 acccggcggg cgatttctcg caccccgagg ccctgacctt tcaacatcgc gatctcttcc
     1741 cgctccgcga acgacaaata ccggccggta acaggagcaa ccaggaacaa tggcataccg
     1801 ccacgctccc ggaaccaccg gctcccagcc gctggcgaca cgccgaccgc gacggcggca
     1861 tcctcgctgc tcagaccctt ggcgatctcc cgccagaaca gacgctcgac ttcgcgccgc
     1921 aacgctggcg cccccggcga cctcatcgcc gatctgcccg tcaacgcctt catccacccc
     1981 gccggccggc ccatcgcacc ctccaatctg gaggtgttgc gacgaccggt tgaattcacc
     2041 caatatacgt ccgcggaatt cacgcggttc tgtcgtggga tcaacgtccg gaccagcgtc
     2101 gggcgcaccg gcgtgtgctg ggacaacgcg gccgcagagt cattcttcgc caccctgaaa
     2161 aacgaaatgt actatcggca acggttcccg acacgcgctc gagcacgatt cgcggtcgcc
     2221 gaatacatcg aggtcttcta caaccgccga cggctgcact ccaccctcgg ctaccgcacc
     2281 ccgtttgaag cactcaccga ccaccgcacc gcagcaaccg ccgcggcgtg atcaacccga
     2341 ggacctgtcc aagatccttg acacagccca gggcggtcat cgtcgggccg gggtcggccg
     2401 gcgccgagca cggtggcggt ggcggggttg acgccggcgg t
//
LOCUS       DASVXZ010000805         2445 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1301822, whole genome shotgun sequence.
ACCESSION   DASVXZ010000805 DASVXZ010000000
VERSION     DASVXZ010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1301822"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VF788_17095"
     CDS             <1..265
                     /locus_tag="VF788_17095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935853.1"
                     /translation="EVRGDRMAPRGPVAPAVRACPGVREVREDRGAQWGPAHRAPRAG
                     PCHPEAPAPQAYRVRLAGLARPVGPVRPGERVCWPLVGQRRWQ"
     gene            1554..2240
                     /locus_tag="VF788_17100"
     CDS             1554..2240
                     /locus_tag="VF788_17100"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX8935854.1"
                     /translation="MTKTGSTRPGAVLFDIDGTLVDSSYVHISAWLHAFRAVGYPVDA
                     WRIHRGQGMGSSELLAALLGEVSEEVSSQAKQHHSERYRQGCELLRAFDGARDLVAAV
                     AQRGATVVLATSAAPDELELLRSVLGIDDAVAQITAAQDVEAAKPEPDLIDVALRQAG
                     VSADRAVYVGDTVWDVKACGKAGVTCVGVLSGGISAAELIEAGAVAVYEDCQALLREL
                     DTSPLAAVWS"
BASE COUNT          439 a          743 c          816 g          447 t
ORIGIN      
        1 ggaggtccgg ggggaccgga tggccccgcg gggccctgtt gcccctgcgg tccgggcttg
       61 ccctggggtc cgggaggtcc gggaggaccg gggggcccag tggggccctg ctcaccgcgc
      121 tccccgggct ggcccttgtc accccgaggc cccggctccc caggcttacc gggttcgcct
      181 ggcaggcctg gctcgccccg tgggcccggt tcgccccggg gagcgggtgt gttggccgct
      241 ggttgggcag cggcggtggc agtagtttcc tcagccgcgg aggacgactg atcggttcgc
      301 tgttgcattg cgctcctttg atgtggatca gtgctcggca gtatgccgag accatgtcgc
      361 gtgcggtcag gcgagctgta agttgcggta attgtcacgc cgctagagga atagtgaccg
      421 atccaccgag tacctgcggc ttgtcaggcg cgtgatttga tcaattatgg gctgattcag
      481 gcggtcgatc ctagacaggg taaggctcca gctcgatctt tcacaatcaa cgggtcatcc
      541 gctatcgtcg caccaaccaa ttaggggacc aatacaggag acggccatga gatggccaac
      601 caagtcggcc aaatgatacg tccatatgac ggcgccgttg cccgggccgt atgcgtgtcg
      661 actaacaagc gttccctgat caaaatctca cgcaatccgg ccccagctac gacaccgacg
      721 ctacgggcag agcggtcatg gagcaacatg tgccacgatg atgagcctca catgccaagc
      781 aggtttaatt accagcgcct tcggcccgct gaccgacgtg ttgattgagg ccgccgtgtg
      841 tcaagacatg tcaccgtgtg tcaagacata gagtcgattc tcctcacggc acgccaagac
      901 ggcaggaaaa cccgcgccgc gaagtgctca ctaccgacct cgcacaatgc gacggaacaa
      961 cgagcaagat caaacttggg ccgtcactgg gccgttgaac gtcaagaagc actgagaagc
     1021 ctggaaaaat agcggagcat cgctcctggt cagctcttgc cgcgtgttcc cgacgccgca
     1081 ggtggcgaag cgtggggtgg acgagttggc ctgtaagccg gatccctgtg gctcacaagc
     1141 tcacgatcaa ctacgtgcgg aggttgatct cggagaaggt gggcaacccg gggatggcgg
     1201 ggagccgcgg tgggcgaaag tcggagagcg ggaatgggtc agtcccaccc tggcgaggcc
     1261 gtcaccggtg tgcacctgca gctcagaccg ggagtagacg cttcacctcg gctggcgccg
     1321 cagttggctc cttgagcgct ccgcccacgg agcccgtgtc atcttgacgc gcgaaggtcc
     1381 ttggcatcgg ttaccttaag ggcatcgatc gccgcagtgc atggcctggc cggttccaga
     1441 aaaggagcat ttggacgccc gcgggccaac gaacttaacc agccggcgag cacacacgtc
     1501 gccggggccg gtcgccccgc tgcggcacct aatcgaatgg atgcaaaagc cgagtgacta
     1561 agaccggttc tacccgccca ggcgcggtcc tgtttgacat cgatggaacc ctggttgatt
     1621 ccagctatgt ccacatcagc gcttggctgc acgcgtttcg ggcggtgggc tatcccgtgg
     1681 acgcttggcg gattcatcgc gggcagggga tgggttcctc cgagctactg gctgcgttgc
     1741 tgggtgaggt ctccgaggag gttagctcgc aggccaaaca gcatcacagt gagcgctatc
     1801 ggcagggttg tgagctgctg cgtgcctttg acggcgcgcg agatctggtg gcggcggtgg
     1861 cccagcgggg agccactgtg gtgctggcta cctcagctgc tcctgatgag ctggagttgc
     1921 tgcgttcggt cctcggtatc gacgacgccg tcgcgcagat cactgctgcc caggacgtgg
     1981 aggcggctaa accggagccg gacctcatcg acgtcgctct gcggcaggca ggggtgagcg
     2041 cggatcgggc ggtgtatgtc ggtgacacgg tgtgggatgt caaggcctgc ggtaaggccg
     2101 gggtgacctg tgtgggcgtg ctcagcggag gcatcagcgc tgccgaattg atcgaggctg
     2161 gcgcagtcgc ggtgtacgag gactgtcaag cgctgctccg cgagctcgac actagcccgc
     2221 tggccgccgt ctggtcctga ccgtcacccc tgtcttcttc atgcccgttg gccccccccg
     2281 agcagtcggc ggccacgtaa tgcagcgcct agccgtgctg atcaaccagc ctaaactttc
     2341 aggaaagagc agcgctatgt cgtctgacca gtacaccagc caggatccga cccgccagta
     2401 cgcgccgcct gacactgacg gcgaccagat cgactacccc ggcca
//
LOCUS       DASVXZ010000806         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_586953, whole genome shotgun sequence.
ACCESSION   DASVXZ010000806 DASVXZ010000000
VERSION     DASVXZ010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_586953"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1106
                     /locus_tag="VF788_17105"
     CDS             <1..1106
                     /locus_tag="VF788_17105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011689697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8935855.1"
                     /translation="CLGYGKHDPAGRNGGNSRNGTRPKTVLTEAGPVEIQVPRDRESS
                     FEPVIVGKRQRRLSGIDDLVISLSAKGLTHGEIGAHLAEVYGAQVSKQTISTITDRVM
                     EGMTAWQNRPLDPVYPVIFIDCVNVTIREGNVANRPIYVALAVTVEGHRDILGLWSGE
                     HGDGEGAKYWMRVLSEIKNRGTRDCLIAVCDGLKGLPEAIAAVWPQTIVQTCIVHLLR
                     NSFKYASRKDWAAIAKDLKPVYTAVSESAALDAFAEFSEKWERKYPAIIRLWTNAWAE
                     FVPFLQFDQEIRTIICTTNAIESINARIRRAVNARGHFPTEQAALKCVYLAIMSLDPT
                     GTGQRRWSNRWKAALNAFEITFDERLSAARNAS"
     gene            1365..>2070
                     /locus_tag="VF788_17110"
     CDS             1365..>2070
                     /locus_tag="VF788_17110"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935856.1"
                     /translation="MSSRDVVCERVVIAVDPHKASWTAAVVNASLQPLATLRVPVSAA
                     GYQQLRRFARRWPQASWAIEGAGGLGAPLATRLSGEGIAVVDVPAKLAARVRLLSTGH
                     GRKNDDADATSVGIAALTAIGLHTVEIDEAAIALRALVEHRDDLVKTRTQTLNRLHGL
                     LTRLIPAGAPTRLSAEAAAELLRTIRPRTPLLRTLRALASDLITEIRRLDRRITTTAT
                     EITTAVAASGSTLTQLH"
BASE COUNT          358 a          678 c          679 g          355 t
ORIGIN      
        1 attgtctcgg ttacggcaag cacgatccgg ctggccgtaa tggcgggaat tcgcggaacg
       61 ggacacggcc taagacggtg ctgaccgaag ccgggccggt ggagatccag gtgccacggg
      121 atcgggagtc gagttttgag ccggtgattg tgggcaagcg ccagcggcgg ctctccggaa
      181 tcgatgatct ggtgatctcg ttgtcggcga aggggctcac ccatggtgag attggtgcgc
      241 acctggccga ggtctacggc gctcaggtgt ccaaacagac catttcaact attactgatc
      301 gggtcatgga ggggatgacg gcctggcaga accgtccgct ggatccggtg tatccggtga
      361 tcttcatcga ctgcgtgaac gtcacgatcc gcgagggtaa tgtggcgaac cggccgatct
      421 acgtcgcgct cgcggtcacc gtcgaggggc accgcgacat cctggggctg tggtccgggg
      481 agcacggaga cggggagggc gccaagtact ggatgcgggt gctctcggag atcaagaacc
      541 ggggcacccg ggactgcctg atcgccgtgt gcgacgggct gaagggcctg cccgaggcga
      601 tcgcggcggt gtggccccag accattgtgc aaacatgtat cgtgcattta ttgcgcaatt
      661 cgttcaagta cgcatcgcgc aaggactggg cggcgatcgc caaagatctc aaaccagtct
      721 acaccgccgt ctcagagtcc gccgcgctgg acgctttcgc cgagttcagt gagaaatggg
      781 agcgcaagta tcccgcgatc atccggctgt ggaccaatgc gtgggccgag ttcgtgcctt
      841 tcctccaatt cgatcaggag atccgcacga tcatctgtac caccaacgcc atcgagtcga
      901 tcaacgcccg gatccggcgc gcggtcaacg cccgcgggca cttccccacc gagcaagccg
      961 ccctcaagtg cgtctacctc gcgatcatga gcctggaccc caccggcacc ggacagcgac
     1021 gctggtccaa ccgctggaaa gccgccctca acgccttcga gatcaccttc gacgaacgcc
     1081 tgtccgccgc acgcaacgca tcgtaaacat ctaacacact gagttacacc aacttgttta
     1141 atccccggct aggagatcat cggtctgcag ccgggatctc ccaggcgccg atcggggtcg
     1201 ctccagttac acctgtcgct cctgcggggg ttgactcttt aacggcctgc gacccgatcg
     1261 acgccgctgg ctgggagtgg ctcaagagag gcctgcattg ccctaagttg gtctgccctc
     1321 ctcgccgcac atcaggcgtt gtccgtgctt gttgaggagg tgtcgtgtcg agtagggatg
     1381 tggtctgcga gcgggtggtc atcgcggtcg atccgcacaa ggcgtcctgg accgcggctg
     1441 tggtcaacgc gtcgctgcag ccgctggcta ccctgcgggt gcccgtcagc gcggcgggct
     1501 accagcagct gcggcgtttt gcccgccggt ggccgcaggc cagctgggcg atcgagggtg
     1561 cgggtgggct gggagccccg ctggccaccc gcctgtccgg tgagggcatc gccgtggtgg
     1621 acgtgccagc gaagcttgcc gcccgggtcc ggctgctctc caccgggcat ggccgcaaga
     1681 atgatgatgc ggacgccacc tcggtcggta tcgctgcgtt gactgcgatc gggctgcaca
     1741 ccgtggagat cgacgaggcg gcgatcgcgc tgcgcgccct ggtcgagcac cgggatgacc
     1801 tggtcaagac ccgcacccag accctcaacc ggctgcacgg gctgctcacc cggctcatcc
     1861 cggccggggc acccacccgc ctcagcgccg aggccgcagc ggagttgctg cgcacgatac
     1921 gcccgcggac cccgctgctg cggaccctgc gagctctggc cagcgacctg atcaccgaga
     1981 tccgccgact tgaccggcgc atcaccacga ccgccaccga gatcaccacc gccgtcgcgg
     2041 ccagcggcag caccctgacc cagctccacg
//
LOCUS       DASVXZ010000807         1839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1034990, whole genome shotgun sequence.
ACCESSION   DASVXZ010000807 DASVXZ010000000
VERSION     DASVXZ010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1034990"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1839
                     /locus_tag="VF788_17115"
     CDS             <1..>1839
                     /locus_tag="VF788_17115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="germacradienol/geosmin synthase"
                     /protein_id="HEX8935857.1"
                     /translation="DQLGAKKYLDRLPAFMPIDLTDAVPEPANPVERGLIDLWPRTVP
                     NKSMEWRRRFFDSTRNLLYESTWELANISSNRVPNPIEYVEVRRKVGGAPWSADLVEH
                     AAFVEIPSGIADSRPIHVLKDSFADAVHFRNDLFSYQRETQQEGEINNCVLVLERFLD
                     VSPQRAADLTNDLLTSRLQQFENTALTELPTLFEECGLDLPERESVLLFAKGLQDWQS
                     GCHEWHLRSSRYMNDKATDEPSIVQRLLSGPAGLGTSAAQIRLSPGALGLQRLKYHTH
                     SPYLPVGPTKLPDFYMPYTARVNGHLERSRRYCIEWAGQMGMLDPSPGGVGIWDEENL
                     ALFDFANCAARIHPDASGPQLDLSAAWLTWGTYGDDYFPAVFGPTRNMAGAKVFNTRL
                     REFMPLECSATPPPANPVEAGLADLWVRTAAGMTRTGRRQFRQAVDSMTTSWLWELAN
                     HIQHRIPDPVDYIEMRRHTFGSGLTMSLARIAKADEVPAEIFGTRTLRALENSAVNYA
                     TFTNDIFSYQKEIEFEGELHNIVLVTQKFLEIDREQAVEVVNNLMASRMRQFEHIIVT
                     ELPVVVEEFQLDAAARKALDDHVVGLQDWVAGLLDWHMDSGRYSEPA"
BASE COUNT          365 a          533 c          578 g          363 t
ORIGIN      
        1 gatcagctcg gcgcgaagaa gtatctcgac cgactgcccg cgttcatgcc catcgatctc
       61 accgatgcgg tacccgagcc agcaaatccg gtggagcgtg gtctgatcga tctgtggcct
      121 cgcaccgttc cgaacaaatc aatggaatgg cggcggagat tcttcgacag cacgcgcaat
      181 cttctttacg agtcaacctg ggagctcgct aacatcagca gcaatcgggt cccgaacccg
      241 attgagtacg tcgaggtgcg gcgcaaggtc ggtggtgcgc cctggtcggc cgacctggtg
      301 gagcatgccg cgttcgtcga gatcccgtcg gggatcgccg atagccggcc gattcacgtt
      361 ctcaaagaca gttttgccga cgcggtacat ttccgaaacg accttttttc ctaccagcgc
      421 gagactcaac aagaaggtga gatcaacaac tgcgtgctgg tgcttgagcg gtttttggac
      481 gtcagcccgc agcgcgccgc ggatctgacc aacgatcttt tgacctcgcg cctgcaacaa
      541 ttcgagaaca ccgccttgac cgagctgcca actctattcg aagagtgcgg cctcgacctg
      601 ccggagcggg aaagtgtcct gctgttcgcg aagggtctgc aggattggca gtcgggttgc
      661 cacgagtggc atctgcggtc gagccgttat atgaacgata aagcgaccga tgagccgtcg
      721 atagtgcagc ggctgctcag cggcccagcc gggctgggca cctcggcagc gcagattagg
      781 ttgtcacccg gcgccttggg tttgcaacgg ctcaaatacc atacccattc gccgtacctg
      841 ccggtgggcc ccacgaaatt gccggatttc tacatgccgt ataccgcacg ggtcaacggt
      901 catctggagc gctcgcggcg atattgcatc gagtgggccg gacagatggg gatgttggat
      961 ccctcgcccg gcggcgtagg tatatgggat gaggaaaacc tcgcgttgtt tgattttgcg
     1021 aactgtgcgg cgcggattca tccggatgca tcgggcccgc agctcgactt gtccgcggcg
     1081 tggttgacgt ggggaactta cggtgatgac tactttccag cagtcttcgg gccgactcgc
     1141 aacatggcgg gcgcaaaggt attcaacacg cggttgcggg agttcatgcc gctggagtgc
     1201 tccgcgacac cgccgccggc caacccggta gaagctggtt tggcggatct gtgggtgcgc
     1261 accgccgctg gaatgaccag aacggggcgg cgtcagttcc ggcaggccgt ggacagcatg
     1321 acgaccagct ggctgtggga gctggccaac cacatccagc accggatccc tgacccggtg
     1381 gactacatcg agatgcggcg ccacaccttc ggttccggtc tgacgatgag cctggctcgg
     1441 atcgcgaagg ctgatgaagt tccagcggaa atctttggca cccgcacact gcgcgcgctg
     1501 gagaactcgg cggtcaacta tgcgaccttc accaacgaca ttttttccta ccagaaggag
     1561 atcgagttcg aaggcgaact gcacaacatc gtgctggtca cccagaagtt cctcgagatc
     1621 gaccgcgagc aggcggtgga agtcgtcaat aacctgatgg cgtcgcggat gcgccaattt
     1681 gagcacatca tcgtcacgga gctacccgtg gttgtcgagg agttccagct ggatgccgcc
     1741 gcccggaagg ctctcgatga tcacgtggtg ggactgcaag attgggtggc cggacttctc
     1801 gactggcata tggacagcgg ccgatattcg gagccggca
//
LOCUS       DASVXZ010000808         1848 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_765855, whole genome shotgun sequence.
ACCESSION   DASVXZ010000808 DASVXZ010000000
VERSION     DASVXZ010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_765855"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..728
                     /locus_tag="VF788_17120"
     CDS             213..728
                     /locus_tag="VF788_17120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935858.1"
                     /translation="MHLGRTALFAAAALVFGMGEAPASTLTPAPQAAVPSSSQPMYLA
                     DWDYCDDWNHRDEGPCRGDHWTWDGHNWIHDRWDGHNGTIDEHLRHEHRVIHHLRARP
                     AESCMFRRPSPAHRGRGDGPMLPGRSERTPHRLITAARSRRPLWPGQRDRLITYGVTQ
                     VVLAVDENTGA"
     gene            1379..>1848
                     /locus_tag="VF788_17125"
     CDS             1379..>1848
                     /locus_tag="VF788_17125"
                     /inference="COORDINATES: protein motif:HMM:NF013697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX8935859.1"
                     /translation="MAVLVIAACGDGDSGARLGFAPRDHVSIAGEEINILLPYKLPER
                     FLDEFTRQTGVKVSVNVTNWDAVHSKLIVANTAKAYIADVTEFDWSFTGQFAAAGWYE
                     PLEEVFDPVLIGDLSRADAAFTAGGHTYAVCYSNDYRLSLYNTNMFMAAGLGEFP"
BASE COUNT          334 a          557 c          607 g          350 t
ORIGIN      
        1 ggaaaagccg gacagaccgg cagccctctc gcgcccgaat ccagccacca ccacaccgaa
       61 gatcaaaaat cgccacagaa cgatcatcga aactcgactg gtggatctgg gctcagtgac
      121 tcccagcgaa ctttcagtta cctcgcacaa cgacatttgt gtccgaacgt cccttctgag
      181 gttcttacac actcgatcga ggagggttca ccatgcatct aggccggaca gcgctttttg
      241 ccgctgccgc tctggtgttc ggaatgggcg aggcgccggc cagcacgctc accccggccc
      301 cgcaggcggc cgtacccagc tccagccagc cgatgtacct tgcggactgg gactactgcg
      361 atgactggaa ccaccgcgac gaggggccat gtcgaggcga ccactggacc tgggatggcc
      421 acaactggat tcacgaccgt tgggatggcc acaatggaac catcgatgag catctccgcc
      481 acgagcatcg ggtgatccat cacttacggg cccggcctgc ggagtcgtgc atgttccgcc
      541 ggccaagccc ggcccaccgc ggccgcggtg acggcccaat gctccccggc cgcagcgaga
      601 gaacgcctca ccgcctgatc acagctgcgc ggtcacgccg cccactgtgg ccaggccagc
      661 gcgaccggtt gatcacctac ggcgtcacac aggtcgtgct cgccgtcgac gagaacactg
      721 gcgcgtgatc ttgctgcact ccgcatcggc caagtgggcc ctggtcatgc gctgcacctc
      781 cagctcggag ccctccacct ccttcgcggt cgcgacacca gagggcctag tggatcaagc
      841 agggtggcca cggctcggag aggcaggctt gccagcgggg cgttcgaaac aacccaggcc
      901 cgcgagcaca atatgaccta tgcccgatac gcgaccacat cgttgctgcc gtggcgcgtc
      961 tgcccggggc tacggtggta ggacggccga tcaagtccta caccgtgctg acctcaaact
     1021 catacggttg cttacgggcc gctcgtggtg gttgaagccg gggatcggcc tcctgttgac
     1081 gtcggtgtcc gcggccactc ggtcggtgac atggtggaca gggtcaaccc ttggatggtc
     1141 cagtgtctgc ggcggcagga tctttagccc ggtccgtgtc ccgactgagg aggaggccgg
     1201 gattgtgagc gtcaaggcaa gcgacttcaa ggtgggtgat cacctagggg cggcagtgga
     1261 gcttatgcgc cgacggaaac tcgatgtcga tcggtcggtg cctttggtcg gttgtgtgcg
     1321 gtaagggctg tgggtgagga agcacgcgat gcgtggcatt ttgtgggcgg tggcctgggt
     1381 ggcggtgctg gtcatcgcgg cgtgtggcga cggggacagc ggcgcaaggt tggggttcgc
     1441 gccgcgtgac catgtgtcga tcgcgggtga ggagatcaac attctgttgc cgtacaagct
     1501 ccccgagcgg tttctggacg agttcacgcg ccagaccggt gtgaaagtaa gtgttaacgt
     1561 caccaattgg gatgcggtgc actctaagtt gatcgtcgct aatacggcga aggcctacat
     1621 cgctgacgtg acagagttcg attggtcgtt cactggccag ttcgcggccg ccgggtggta
     1681 tgagccgttg gaggaggtgt tcgatccggt gctgataggg gatctttccc gggccgacgc
     1741 ggccttcact gcgggcggac atacctacgc ggtctgttat tcgaatgact atcgactgtc
     1801 gctgtacaac acgaacatgt ttatggcggc cggtctgggg gagttccc
//
LOCUS       DASVXZ010000809         3405 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1122512, whole genome shotgun sequence.
ACCESSION   DASVXZ010000809 DASVXZ010000000
VERSION     DASVXZ010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3405
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1122512"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1017)
                     /locus_tag="VF788_17130"
     CDS             complement(<1..1017)
                     /locus_tag="VF788_17130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8935860.1"
                     /translation="MGDSSQRLDNLLSENRVFPPSEEFAAQANTTAELYDQADADREA
                     FWAQQARQLHWDTDFTQVLDWSNVPFAKWFIGGKLNVAYNCVDRHVEDGHGDQVAFHW
                     EGERGDTRTITYADLQREVCKTANALLSLGLEAGDRVAIQLPMIPEAVFAMLACARLG
                     MPHSVVFGGFSAESLRQRINDAQAKLVITADGQYRRGKVAPLKANAEEALQGTSTVEH
                     VLVVKRTDTDIDWTEGRDLWWHEVVDQQSDEHTPQPFDSEHPLFILYTSGTTGRPKGI
                     LHTSGGYLTQCAYTHHVVFDHKAGQDVYWCTADIGWVTGHSYIVYGPLANRATSVMYE
                     GTPNT"
     gene            complement(1273..1857)
                     /locus_tag="VF788_17135"
     CDS             complement(1273..1857)
                     /locus_tag="VF788_17135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEX8935861.1"
                     /translation="MSPINRRSVIRHLFPIVAAACLPVAGGGVFAGTAEAATGVDWDA
                     IARCESGGNWAINTGNGYYGGLQFSLSTWRAHGGVGNPAHAAREQQIAVAERVLKSQG
                     IGAWPTCGKRAGNIAGPTRTKPAKPKTPPQPSSPPMPAGLISAYTVLSGDTLWSIAAD
                     HHVRGGWLQIYEANRDVVTDPDLIGIGQSLRIPQ"
     gene            2303..2692
                     /locus_tag="VF788_17140"
     CDS             2303..2692
                     /locus_tag="VF788_17140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935862.1"
                     /translation="MDHWLSIEIFDGEFPASRWRRAHSDNLTEAAITNGALRWQWHEH
                     QWGIVIELEFIDETERDRFRALPAVCAALDAAPDPVNGVLVYPGRGGGSGARVPRRPR
                     PRPSSGAGARPVPDDEQYIQLDTHELV"
     gene            2899..>3405
                     /locus_tag="VF788_17145"
     CDS             2899..>3405
                     /locus_tag="VF788_17145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8935863.1"
                     /translation="MRELLADPRLSRSHPNPGHPVRLTQPGLFGGQIPDPEGEQADLN
                     RMRKLLTPLLSARRMERLQPRVQMIVDELLDTLESSGPPADFHSLVAFPLPALVVCEL
                     LGVPAEDRADFRRWQIEAKQVSKPAVARGGLQSLWRYLGTRSASPSRACLGDRSPTRK
                     ANWQICSGC"
BASE COUNT          587 a         1123 c         1059 g          636 t
ORIGIN      
        1 agtgttcgga gtgccctcat acatcaccga cgtggcccgg ttggccagcg gcccgtagac
       61 gatgtagctg tgcccggtga cccagccgat atcggcggtg caccagtaga cgtcctggcc
      121 ggccttgtgg tcgaacacga cgtggtgggt gtaggcgcac tgggtgaggt agccacctga
      181 ggtatgcagg atgcccttgg gccttccggt ggtgcccgag gtgtagagga tgaacagcgg
      241 gtgctcgctg tcgaagggct gcggggtgtg ttcatcggac tgctgatcca ccacctcgtg
      301 ccaccacagg tcgcgaccct cggtccagtc gatgtcagtg tcggttcgct tgaccacgag
      361 cacgtgctcg accgtggagg tgccctggag cgcctcctcg gcgttggcct tcaacggagc
      421 caccttgcct cgccggtact gaccatccgc ggtgatcacc agtttggcct gcgcatcatt
      481 gattcgctgg cgcagcgact cggcggagaa cccaccgaaa accacgctgt gtggcatgcc
      541 cagcctggcg cacgcgagca tggcgaacac cgcttcgggg atcatcggca gctggatggc
      601 cactcgatcc ccggcttcca gacccagcga cagcagagcg ttggccgttt tgcagacctc
      661 tcgttgcaga tcggcgtagg tgatggtgcg ggtgtcacca cgctcgccct cccagtggaa
      721 agcgacctga tccccgtgac catcctcgac gtgccggtcg acgcagttgt aagcgacgtt
      781 gagcttgccg ccgataaacc acttcgcaaa tggcacgttc gaccagtcga gaacctgggt
      841 gaagtcggtg tcccagtgca gctggcgagc ctgctgcgcc cagaaagcct cacgatcggc
      901 gtccgcctga tcgtagagtt ccgcggtggt gttcgcctga gccgcgaatt cctcgctcgg
      961 gggaaacacc cggttttcgc tgagcagatt gtcgagtcgc tggctcgagt cacccatcgc
     1021 gcgaggacct ccctgtcgca tccatctccg gtcagcccac gacgctagtc ggctcgccac
     1081 ccctgtgcta ccactccgtg cgatcttccc acccatcagt caatgcctcg ccctcccggc
     1141 aagcagccgg gcggtggtgg cctcgcccga gccgtgctgc ccgagcaggc cgaggagccg
     1201 acatggagac atatcggggg cgaggacccc tggatcggct cgatatgtct ccatgtcggg
     1261 gtagcgccaa ggtcattggg ggatccgcag ggattgtcca atcccgatca ggtccggatc
     1321 ggtgacgacg tcccgattag cctcatagat ctgcaaccaa ccaccgcgta cgtggtggtc
     1381 agcagcgatc gaccacaatg tatctccgga cagcactgtg tatgcagata tcaggccagc
     1441 gggcatcggt ggtgaactgg gctgaggagg ggtcttcggc ttcgccggct tcgtccgagt
     1501 cgggccggcg atgttgccgg cgcgtttccc gcaagttggc catgctccga taccctgcga
     1561 cttcagcacc cgctcggcaa ctgcgatctg ttgttcccgg gcagcatggg cgggattacc
     1621 cacgccacca tgtgcccgcc acgtcgacag gctgaattgt agcccaccat aatagccgtt
     1681 tccggtgttg atcgcccagt ttccaccgga ctcgcagcgc gcgatcgcat cccaatccac
     1741 tcccgtcgct gcctctgcgg tgcctgcgaa aacaccaccg ccggccaccg gtaaacaggc
     1801 tgccgcgacg atgggaaata ggtgtcgaat gaccgatcgg cggtttattg gggacatgcg
     1861 aactccgttc tccggtcacc aaaaggtgcc gaatggtagg cgtcggtcgc gctgatatcc
     1921 cctcaccaca cgcacggcca tgaaagccgt cagtcctttt tcagcgccgg aggcgtcatc
     1981 gtgatcgcgt tggattatgc gggtctcgtc acgactttct cggtcgacaa gttgcgatgt
     2041 tcgctggttg actgttcctc accggtcacc gggcttctcc tccgcggtcc cgccctcacg
     2101 ctgaatgatg ggcggttcta ctctctacgg tgcagccttc cctcctgctc tcgccaagag
     2161 tcacgttagg caaccaagaa cgccagtatt gccactcatt cggagtaatc atattcactc
     2221 tgttgcaata tttagttaac aaagagcggc aattgacggc gcacgtggcg atatgtccgt
     2281 ttccggcgta cgctcgtcga gcatggacca ctggttgtcc atcgaaatct tcgacgggga
     2341 gttcccagcg agtcgctggc gacgggcgca cagcgacaac ctcaccgagg ccgcgatcac
     2401 caacggtgcg ctgcggtggc agtggcatga gcaccagtgg ggcatcgtga tcgagctgga
     2461 gttcatcgac gaaaccgagc gcgaccgctt ccgtgcgctg cccgcggtgt gcgcggcgct
     2521 ggacgctgcg cccgacccgg tgaatggagt actcgtctat ccaggtcgcg gcggtgggtc
     2581 cggtgcgcgg gtgccgcgcc gcccgcgccc gcgacccagc tccggcgcgg gtgcgcgacc
     2641 tgtgccagac gacgagcagt acatccagct ggacactcac gaactggtct gagtcacttc
     2701 gtcgcgaacg acctccccga cgccgatccg ggggatagac ccacccgaat accacaaggg
     2761 ttcctcaagg gaacctttaa gctgcgcgcg tcctcccgcg atcacccccg aagggcgatg
     2821 atgacaccca cgcacgggat ccaccaggtt agcgacaccc aaggccggcc cgcctggctg
     2881 gtatcaggac acgaccgggt gcgcgagttg ctagccgatc cgcggttgtc gcgctcacat
     2941 cccaacccag ggcacccggt tcgcctcacc cagccgggcc tattcggcgg ccagatcccc
     3001 gatccggaag gggagcaggc tgacctgaac cggatgcgca agctcctgac gccgctgcta
     3061 tcagcccgtc gcatggaacg cctgcagccc cgggtccaga tgatcgtcga cgagttgctc
     3121 gacacgctgg agagcagcgg cccgccggct gatttccact ccctcgtcgc cttccccctt
     3181 cccgcgctgg tggtgtgcga gttactcgga gtgcccgccg aggatcgcgc ggatttccgc
     3241 cgttggcaga tcgaggcgaa gcaggtcagc aagcccgcgg tggcccgcgg gggcctgcag
     3301 tcgctatggc gttacctggg cacccggtcc gcctcaccca gccgggcctg tttgggggac
     3361 cgatccccga cccggaaggc gaactggcag atctgcagcg gatgc
//
LOCUS       DASVXZ010000810         2154 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_587667, whole genome shotgun sequence.
ACCESSION   DASVXZ010000810 DASVXZ010000000
VERSION     DASVXZ010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587667"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(141..1648)
                     /locus_tag="VF788_17150"
     CDS             complement(join(141..766,766..1648))
                     /locus_tag="VF788_17150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611833.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HEX8935864.1"
                     /translation="MWAAYHNDRTITTLDAVLGLTLQIRRCRNPACLHVHHPHRPEHE
                     GRLALPKHEFGLDVIAFVGQQRYGHHRSVPEIHQTLVERHVAVAPRTVTHLLERYDEL
                     VALSLQDTTRLHRITHIRGRIILALDGLQPEVGHEVLWVLRDCLSGEVLLARSLLSAT
                     HDDLALLVQEVQQALPVPIVGVITDGQPSIRAAMAQALPGVPHPLCQFHYLREAAKPI
                     SEADRHAKKILKKRVRGVRPLERQVEGRTDPEAEVVRGYCSAVRSALTDDGPPPLAAA
                     GLTLHDRLTAIADSLERVGKKGALPQALGRLKTILRRGLDTTAALWPDVRVAYGWVHR
                     AAHVLNNDQDGAAVVKRRLRGLLGAMTRHRAKAGALTAAVDHFLKVSRSYWPGLFPCY
                     SIPALPRTNNELEQFFGAHRCHERRTTGRKGATPGLVLRGAVRLVAWAATRLRPFASE
                     DLVPDTVSAWQELRHALESRRHQRTQRRRFRRAPAAYLATLEADLLKLILPP"
     gene            complement(1795..2130)
                     /locus_tag="VF788_17155"
     CDS             complement(1795..2130)
                     /locus_tag="VF788_17155"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX8935865.1"
                     /translation="MEDNNALTRHQLLACLELGKALAAELDATRLLDTILHKVSALLP
                     AEHWSLLLLDEATGELRFELSVDLEPSVICSLRLRPGEGIAGQVALRQQPMMVTDVSM
                     SPFFSRMAN"
BASE COUNT          406 a          626 c          741 g          381 t
ORIGIN      
        1 gaaacatcgc ctgcaaaagg agatgcccga gattttctcg gtacgacggg ccaagcgtga
       61 agacgcatat gccgccttac aggcgccgct gtagcaacag atcgggcaac tcaaggtgga
      121 gttggactgg ttgaaaaaaa ctagggcggc aaaatcagct taagaaggtc tgcctccagg
      181 gttgcgagat aggcagcggg agcccggcga aagcgccgcc gctgtgtgcg ctggtggcgg
      241 cgggactcca gagcgtggcg gagttcttgc caggcactga ccgtatcggg aacaaggtcc
      301 tcgctggcga aggggcgtag gcgggtggct gcccatgcca caaggcggac ggcgccgcgg
      361 agcaccaagc cgggagtggc tcccttgcgc ccggtagtgc gtcgctcatg acagcgatgg
      421 gcgccaaaaa actgctccaa ctcattattg gtgcggggga gagccgggat gctatagcag
      481 gggaaaagcc caggccaata actccggctg accttcagaa agtggtcgac ggcggcggtc
      541 agtgcgcctg ctttggcgcg gtgccgcgtc atggccccga ggagaccccg caggcgccgc
      601 ttcaccacgg ccgcaccgtc ttggtcgttg ttcaggacgt gggccgcccg atggacccag
      661 ccataggcga cgcggacgtc aggccacagt gcagcggtcg tgtccaaccc gcgccgcagg
      721 atcgtcttca gacgcccgag ggcctggggc aaggccccct tttttcgacc cgctccaggc
      781 tgtccgcgat agcggtgagg cggtcatgga gcgtgagccc tgcggccgcc agcggtgggg
      841 ggccatcgtc ggtgagggcg ctgcgcaccg cgctacagta gccccgcacg acttccgcct
      901 cggggtcggt acgcccctcc acctgccgtt ccagaggacg gacgccccgc acccgctttt
      961 tcaggatttt cttggcatgg cgatcggctt cagagatggg cttggcagct tcacgcagat
     1021 aatggaactg gcacaatggg tgtggcacgc caggcagggc ctgtgccatg gcggcccgga
     1081 tggagggttg gccgtccgtg atgaccccga caatgggcac cgggagcgcc tgctgtacct
     1141 cttggaccaa gagtgccaga tcgtcgtgag tggccgagag caaactccgg gccaagagga
     1201 cctcgccgga gaggcaatcg cgcagcaccc agaggacttc atggccgacc tcgggttgga
     1261 ggccatcgag ggccaagatg atgcgaccac ggatgtgggt gatacggtgg aggcgcgtcg
     1321 tgtcctgcag cgagagggcg accagttcgt cgtaacgctc caggagatgc gtgaccgtcc
     1381 gtggggccac tgccacgtgg cgctcgacca aggtctgatg gatttctggg acactgcggt
     1441 ggtggccata gcgctgctgc cccacgaagg cgatgacgtc aagaccaaac tcgtgcttgg
     1501 gaagtgccag gcgcccttcg tgttcggggc ggtgggggtg gtgcacgtgc agacaggccg
     1561 ggttgcgaca gcgacgaatc tggagggtga gccccaggac cgcgtcgagt gtggtgatgg
     1621 tccggtcgtt atggtaggca gcccacagcg tctcgccaca ggtggggcag gagcgcagga
     1681 gcggtttcaa aatctgcctt tcagtggggg cgggtcgggg ggtaatacgt gccatagccg
     1741 atacctccat gagtcgttct attcatggta tcggtatctt acctgagctt tagctcagtt
     1801 tgccattcta gaaaaaaacg gactcatgct tacatccgtc accatcatcg gttgctgccg
     1861 cagcgccacc tgaccggcaa tcccttcgcc gggccgcagg cggagactgc agatgacgga
     1921 cggctccagg tctacactca gctcaaaacg cagttcacct gtggcctcat ccagcagcag
     1981 caatgaccag tgctccgctg gcagcagggc agagaccttg tgcagaatcg tgtccaggag
     2041 tcgggtggcg tcgagttcgg cagcgagggc tttgcccagt tcgagacagg caaggagctg
     2101 gtgccgggtt aaagcgttgt tgtcctccat cagcctcttc ccttacagtg gtac
//
LOCUS       DASVXZ010000811         4753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_946680, whole genome shotgun sequence.
ACCESSION   DASVXZ010000811 DASVXZ010000000
VERSION     DASVXZ010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4753
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946680"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..1311
                     /locus_tag="VF788_17160"
     CDS             82..1311
                     /locus_tag="VF788_17160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009083408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX8935866.1"
                     /translation="MPRLPVLLVLLGLVVGCSIGGQGTPIGAGVPTQIPGSFPAPQRS
                     PTVPGIRVDVVAAGLEHAWDIGFLPTGAALITERPARLRLLRSTGPGTQVTEVAADLD
                     DVFVAGEGGLMGLVVHPDFAQTRRFTTCQTHQQGGRPVDVRLVTWELSPDGARARRVV
                     DPLVAGLTLNPSGRHSGCRPALGPDGYLYVGTGDSAMAAVAQDRSKLGGKVLRIDLRT
                     GAPAPGNPFAGSPNAAERLVFTYGNRNVQGVTVQPGTGRLFAAEHGPDVDDEINILRP
                     GGNYGWDPSRGGTRSSYDESVPMTDLQRFPDAVPAVWRSGDATEAICGAAFLTGEQWG
                     AMQGLLAVTALKGAKVLLMRVAADGAVTEVGRLPQLEDSYGRLRAARTGPDGALYVTT
                     SNGDDDKVLKITPMRTS"
     gene            1475..1705
                     /locus_tag="VF788_17165"
     CDS             1475..1705
                     /locus_tag="VF788_17165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935867.1"
                     /translation="MTSAVLGGARGEPIATLETLWRDKLTVLPQIPGFPTAMIPFMPR
                     EVERSLAAPGNPGMYGLNTGLLFGPWGEYQHL"
     gene            1737..2132
                     /locus_tag="VF788_17170"
     CDS             1737..2132
                     /locus_tag="VF788_17170"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX8935868.1"
                     /translation="MADLDKLNHGGSRVIVGAIDLSTALIRYFDNSDHDLSFEHVVAS
                     GSLPPGFPMTEVDRQWYWDGGPFANTPLNPAINFLESCEPDNPAIHRELIVIQLFPME
                     APLPQALPDVINRMVQLQYTSRIKLDEKL"
     gene            2146..2505
                     /locus_tag="VF788_17175"
     CDS             2146..2505
                     /locus_tag="VF788_17175"
                     /inference="COORDINATES: protein motif:HMM:NF023950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935869.1"
                     /translation="MLKLIERVDAELPADSPIRADQDYQRMLDHRRVDSFKVIEARLD
                     PDLTNATDFSRFSVEARIQAGYDDAKRQGVSWPSISAPPAPQAVSAPQATPRRRAAPW
                     PATRRCAPARPRPETPS"
     gene            2660..2944
                     /locus_tag="VF788_17180"
     CDS             2660..2944
                     /locus_tag="VF788_17180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935870.1"
                     /translation="MRGKKIDRTAVLRDLQKIEEEDYDGFVLLVQAARNRHATFDPNL
                     PVWDLAQRLGIIVDCNRGGVPEFDEAMRDFVRDSSNVDGSDKRPYVKGRH"
     gene            complement(3094..3567)
                     /locus_tag="VF788_17185"
     CDS             complement(3094..3567)
                     /locus_tag="VF788_17185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935871.1"
                     /translation="MVDDVDGRAELIRRIEARRSSINAFVRRVRPRNARLANISIVSS
                     AAAAAFTAGPALGGLSFAETVQRGLSLSDSSLVWRVLCLFAMLVSLVAAISVNLNKSQ
                     DMASQLSAAEACDAELEGLRTLLEFAQLSVHDAAGLYQKYITKIPFVQEEPVNYR"
     gene            complement(3964..4356)
                     /locus_tag="VF788_17190"
     CDS             complement(3964..4356)
                     /locus_tag="VF788_17190"
                     /inference="COORDINATES: protein motif:HMM:NF017470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HEX8935872.1"
                     /translation="MEWYLKVLRQYADFAGRARRKEYWMFTLVNGVISVVLAIVDGVL
                     NLNSGLLDIGLLNGLYSLAVLLPSLGVGARRLHDTGRSGWWLLIGLIPLIGWIALIVF
                     FTIDGERQPNAYGPDPKAVPGEAAAVVA"
BASE COUNT          893 a         1564 c         1471 g          825 t
ORIGIN      
        1 tggcgcggcg ggggcgaccc gcatcctcac ccgccgctga ctcacggcgg actcatctca
       61 gaatcgggag catcacgcga aatgcctcgt ttacctgtac tgctggtgct actcgggctc
      121 gtcgtcgggt gctcgatcgg cggccagggc accccgatcg gtgctggtgt tcccacccag
      181 atccccggta gtttcccagc tccgcagcga tccccgaccg tgcctgggat ccgggttgat
      241 gtggttgcgg cgggcttgga gcacgcatgg gacatcgggt tccttcccac cggtgcagcg
      301 ctgatcaccg agcgtccagc acggcttcgt ctgctgcgct ccaccggacc cggcacccaa
      361 gtcaccgagg tggccgctga cctcgacgac gtcttcgtcg ccggggaagg cggcctgatg
      421 gggctggtgg tgcatccgga cttcgcgcag actcgccggt tcaccacctg ccagacccat
      481 cagcaaggtg ggcggccggt ggatgtccgg ctggtcacct gggagctctc ccccgatggc
      541 gcccgagccc gccgggtggt tgacccgctg gtcgccggcc tcaccttgaa cccctccggt
      601 cggcattcgg gatgccgccc cgccttgggg ccggatggct acctctatgt gggcaccggt
      661 gactcggcga tggcggccgt ggctcaggac cggtccaagc tcggcggcaa ggtgctgcgg
      721 atcgatctgc gcaccggcgc tcccgcaccc ggcaatccct tcgccggctc accgaacgct
      781 gcggagcgcc tggtgttcac ctacggcaat cgcaatgtgc aaggcgtgac cgtgcaaccg
      841 ggaaccggcc ggctcttcgc cgcagaacac ggcccggacg tcgacgacga gatcaacatc
      901 ctgcgtcccg ggggcaacta cggctgggat ccatcccgtg gtggcacccg gagcagctac
      961 gacgagagcg tgccgatgac ggacctgcag cgcttcccgg atgcagtgcc tgcagtgtgg
     1021 cgctcgggag acgctaccga agcgatctgc ggggccgcgt tcctcaccgg tgagcagtgg
     1081 ggtgccatgc agggtctgct cgcggtcacc gccctgaagg gcgccaaggt gctgctcatg
     1141 cgggtagccg cggatggagc cgtcaccgag gtcgggcggc tcccgcagct ggaggacagc
     1201 tacggccggc ttcgcgcggc gcgcacggga cccgacggcg cgctgtacgt caccaccagc
     1261 aacggtgacg atgacaaggt gctcaaaatc accccaatga gaaccagctg atttcgcggg
     1321 gacatcgcgg tgccgacccg gctaatatcc ggaccgcgat cgtcctgcgg ggaggagggg
     1381 ccctgggtgc ttacgagctc ggcgtgctca aggccatcta cgaccagcgg cccgggttca
     1441 cgcggcagcg gtagcgggta tctcgatcgg tgccgtgacc tccgccgtgc tcggcggtgc
     1501 tcggggtgag ccgatcgcca ccttggagac attgtggcgg gacaagttga cggtgctccc
     1561 ccagataccc ggcttcccca cggcgatgat cccattcatg ccgcgcgagg tcgagcgttc
     1621 cctggccgcg ccgggcaacc ccggcatgta cgggctgaac actgggctgc tgttcgggcc
     1681 gtggggcgag taccagcatc tatgagacgg ggccgctgcg ccggaccctg gcggagttgg
     1741 ccgacctcga caagctcaac cacggcggca gccgagtgat cgtgggagct atcgatctca
     1801 gtaccgcgct gatcaggtac ttcgacaatt ccgaccacga cctctccttc gagcatgtgg
     1861 tggccagcgg cagcctcccg cctggctttc ccatgacaga ggtggacagg cagtggtact
     1921 gggacggagg gccgttcgcc aataccccgc tcaacccggc catcaacttc ctggagtcgt
     1981 gcgagccgga caatcccgcc atccaccggg aactgatcgt gatccagctg ttccccatgg
     2041 aggctccgct gcctcaagcg ctgcccgacg tcatcaaccg gatggttcag ctccagtaca
     2101 caagccggat caaactcgac gagaaactct aacaagatcg acagggtgct caaactcatc
     2161 gagcgcgtcg acgccgagct cccggccgat agcccgatcc gagccgacca ggactaccag
     2221 cgcatgttgg atcaccggcg ggtcgacagc ttcaaggtga tcgaggccag actcgatccc
     2281 gacctgacca acgccaccga cttctcccgg ttctcggttg aggcccggat ccaggccggc
     2341 tacgacgacg ccaagcgcca gggcgtgtcc tggccttcaa tcagcgcacc gccggcaccc
     2401 caggcagtgt ccgcgcccca ggcaaccccc aggcggcggg cagccccgtg gccggccacc
     2461 cgtaggtgcg cgcctgcccg gccacgccca gagaccccgt catagctgcc agggcctctc
     2521 cacacggctg ataccgatcc tcaccagcat cggcggtctc cacggcgtcg gaatgccatg
     2581 gccgggtgag cgcttgattt tattatgctg taatatcagt gctcaacggg acgcactaag
     2641 agccgaaagg tggtcgccgg tgaggggtaa gaagattgat agaactgctg tgttgcgaga
     2701 cctgcagaag atcgaggaag aagattacga tggctttgtg cttttagttc aggcagctcg
     2761 taacagacat gccacattcg atccgaactt gccggtttgg gatttggctc aacgcctggg
     2821 catcatcgtg gactgtaatc gcggcggcgt tccggagttc gatgaagcaa tgcgggactt
     2881 cgtgagggac agcagtaatg tggacggttc agacaagcgc ccatacgtga agggcagaca
     2941 ttaacacgag accggcattc aacggacatc tcccgcgctg cgcccaacgg gtcgcgactc
     3001 actgcccaga cgagcctggc ctgccggtcg aggtgagaga tcctgatcgg ccggaaagcg
     3061 acattgtgac gactggtcga ggtatcagcc aggtcatctg taattgaccg gttcctcctg
     3121 cacgaatggt atcttggtga tatatttctg atatagtccg gcagcgtcgt ggactgacaa
     3181 ctgcgcgaac tcgaggagcg tccgtagccc ttccagctcc gcatcacagg cttcagcggc
     3241 actaagttga gacgccatat cttgcgactt attcagattc actgaaatcg ccgctacgag
     3301 cgacacaagc atggcgaaaa ggcacaaaac ccgccacaca agcgagctat ccgataatga
     3361 cagtccgcgt tgaacagttt ccgcaaagga caaaccaccc aatgcagggc cagcggtgaa
     3421 ggccgccgcc gccgcactac tgactatgct gatgttggcc agtcgagcgt tacgtggccg
     3481 gacgcgtcgc acgaaagcat tgatgctcga acgccgagcc tcgatccgac gtatcagctc
     3541 cgcccgcccg tcgacgtcat cgaccatcta ctcctcctca aagtcatggg gtttgctgac
     3601 gacgctacct ctgatgagct gacggtaacg gtagtcaacc gctcggccat caggacttgg
     3661 tcacgagctc aacgaggcgc tggctcgggg cctcaccccg atcccttcca agccccggat
     3721 cgttcagcgc gtcccacctc gtccagcccg tgcgatcgcc caccgcgtcc ttgctaccgc
     3781 ttctactacg gccgccccag gatcaaccgg agtagcggaa atagatctcg atggctgtca
     3841 gcgctactgg tccttattcg atgcctgatg acttggaaac ggcctgatct tgtcccgatc
     3901 aatcctgacg atgtaccacc gctggtcagc gagcacagcg gtggacgggg cacgctgtcc
     3961 ccgttaggcg acgacggcgg cagcctcacc cgggacggcc ttggggtctg gtccgtaggc
     4021 gttcggttgc cgctcgccgt cgatggtgaa gaacacgatg agcgcgatcc agccgatcaa
     4081 cgggatgaga ccgatcagca gccaccagcc actccgaccg gtgtcgtgca gccggcgggc
     4141 gccgacaccc aggctcggca gcaacaccgc cagcgagtag agcccgttga gcagaccgat
     4201 gtcgagcagg ccgctgttga ggttgagcac gccgtcaacg atggcgagca caaccgagat
     4261 gaccccgttg accagcgtga acatccagta ctccttccgc cgggcgcggc cggcgaaatc
     4321 ggcgtactgg cgaagcacct tgaggtacca ctccatgatg actcctgttc ttcgcgatca
     4381 ccgctcggca cctgaggtgg cgctcggctc gtggccacac cgtggcctat ttctgatgga
     4441 tagagatgtt ccgacgccgt gctgatacaa aaacttgagg cgctctcgca actgccgccg
     4501 gacctccgag attcaattct cccacggaga ccgagcaagt aagtagccgg aatgagcaac
     4561 aaatccgcca gcggtaatcg aacccgcata gccgcagtca cctcggattg cacgatcacc
     4621 tgcagccggt cccgctcgcg agacccagta tccctttccc tcggcgaccg gcgctacctc
     4681 ggtcacggtg ggacgacgcg ttcgagagtc atcaatcaca gcatcgtcag cagcgtccgc
     4741 tgggtatggc acg
//
LOCUS       DASVXZ010000812        10114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_946764, whole genome shotgun sequence.
ACCESSION   DASVXZ010000812 DASVXZ010000000
VERSION     DASVXZ010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10114
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946764"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..339
                     /locus_tag="VF788_17195"
     CDS             <1..339
                     /locus_tag="VF788_17195"
                     /inference="COORDINATES: protein motif:HMM:NF013440.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GreA/GreB family elongation factor"
                     /protein_id="HEX8935873.1"
                     /translation="LERSDDLAKMDRRITEIRHLLANLDAPQDPQDPLHGTLVTLRFA
                     DGTVATLRVVAITEEAPADRQDEILTADSPLGRALAGRRAGDTITYSVPDGEAQAQVI
                     AVQAPTTSSG"
     gene            404..1003
                     /locus_tag="VF788_17200"
     CDS             404..1003
                     /locus_tag="VF788_17200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX8935874.1"
                     /translation="MDITQLILDDHDEQRRLFAILEQIDRTDTAALSALWTRLAAFLE
                     VHAAAEEEFFYPELLRVGAGAGGVDSPQAETKDAIADHNEIRDAVVAAGGHEVGSDEW
                     YDAVTKANLANSDHMAEEEREGLTDFRRHAALQLRHDLAVAFATFEATHFGRITPVDK
                     DPEGYVREVEAKIAATNDQDNDGATKPEGSLGIGDLKGR"
     gene            1061..1975
                     /locus_tag="VF788_17205"
     CDS             1061..1975
                     /locus_tag="VF788_17205"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEX8935875.1"
                     /translation="MTIPPSGDQFEITNGDHRATIVEVGGGIRGYEVGGRLVLDPYPV
                     DAMCDGAHGSVLVPWPNRLADGRYRFDGVDYQVALTEPDKANAIHGLLRWRSWRAVER
                     TPSRVVMGTRLHPVMGYPFCLDVSVAYELGDGGLVVATTATNVGRTPCPYGCGQHPYL
                     SPGTGLIDACTLQFDARTRVVTDDERQLPTGTEPVAGTPFDFAGGRPLGNQKVDFAFT
                     DLARDEAGRAWVRLSAPDGHRVELWVDEHYPFVEIYTGDTLEPHRRRQGLGTEPMTCA
                     PNAFQSGKGLVRLEPGQSLTATWGVQLI"
     gene            2037..3404
                     /locus_tag="VF788_17210"
     CDS             2037..3404
                     /locus_tag="VF788_17210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010244071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEX8935876.1"
                     /translation="MTETAPPEQRRAAVAQVGGPSETLSNEKINGFIQEQLDAVDLNG
                     RSLCVLVPDGTRSCPLPQLLSAVHHAVHGRVTRLTVLVALGTHAPMTQPALATHLGYP
                     QGELQQRYPGTTVRNHQWWDPATFVDVGTIPADRIGELSSGMLHQKADVRINRAVVEH
                     DLTIIVGPVFPHEVVGFSGGNKYLFPGVSGRELIDISHWLGALITSAGIIGTRGTTPV
                     RALINEATSMVPGERLALCVVTQPSSAFTQPEEVAQAAAFQRSADVPLVDEPAARLHA
                     MTFGEPHAAWAAAVDVSAATHIRYLDAPVRRVLSILPTRYDDMWTGAKGFYKVEPIVA
                     EGGQVVIYAPHIHEISSTHPQMAELGYHCRDYYVKQWDRFKNYHWGDLAHSTHLRGAG
                     TYDEVHGERGRVTVTLATGIPEAQVRAVNLGYLEPAEIDPDAWAADPDTLVVPDAGED
                     LFRLR"
     gene            complement(3434..4939)
                     /locus_tag="VF788_17215"
     CDS             complement(3434..4939)
                     /locus_tag="VF788_17215"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEX8935877.1"
                     /translation="MPKSGTAVELDRAHEPFVLALDVGSTASRGGLYDAAGRPVHGVR
                     HKIPHRFTSAADGTSEIDPDLVVNEISQLITAVTSCRPGVRVAGVALDTFASSLIGVD
                     AAGTALTPCYTYADSRCAPQLAQLRAELDEGAVHDRTGARLHTSYLPARVRWLRESAA
                     DVFARVTRWLSIGEYVHLRLLGDTAIGTSTAAWTGMLDRRTGRWDQPMLDAAGIDPGQ
                     LSEIREPGWSLHDDGRAARRWPGVAGSAWFPVVADGFASNVGAGAADESTIAAAAATS
                     GAMRVLVSGNPEAVPAGLWCYRVDASRSLVGGALSDVGRLVTWLQETLAVDRPGAPLD
                     TEAVMLAAPKSDTPLVLPYLTGERSTGWVGDARAVFAEISVDTAAPQLFRGALEGVAM
                     IYARVARELQQVAGPARRIVASGRVTNDLPAWLQVLADALGAPVEHVTMKRTTLHGTA
                     LIALETIAPDVSRAPVDTGTTYEPTAGNAPYYRTLQERSQALYDAVIAPSA"
     gene            complement(5014..6528)
                     /locus_tag="VF788_17220"
     CDS             complement(5014..6528)
                     /locus_tag="VF788_17220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010242430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8935878.1"
                     /translation="MNEVDLAISRWIARQPPSSFDGVMKGLSAMADHSMLWFVIAAGL
                     AIRKGATRRAALRGVLAIAAASFTTNAVFKPLLPRRRPAAKELPAYQVLPDPPTSSSF
                     PSGHAASAAAFTTAVAMECPKAGLAIAPLAVAVAYSRVHVGVHWTSDVVAGAAVGSGI
                     ALSTRRWWPVRTIDEARARSHGDAPVLPDGAGLVLVANQRSGDPEYDPAKEIAEALPA
                     ATVLRTAEGVDLQKQFEAALTCEDARGEGAAARALGVAGGDGTVAAAAAVAGRRGLPL
                     VVVPTGTLNHFARDVGVYDLQEAVDATQAGEAVAVDLGVVDIQGGGRPPHTRYFLNTA
                     SLGGYSDLVRLREKWEGRWGKWPAFAAALVASLRHAQPLRVKLDGKEQRLWTLFVGNG
                     PYHPRGMVPAWRPQLDSGLLDIRYLRADRRFSRARAIIALALGALRHTRTYVQREAPS
                     LDVELVGGQANLATDGEVMDEAGRFTFRVGERPIAVYRRNEDNWPDRPRPYLPW"
     gene            6724..7197
                     /locus_tag="VF788_17225"
     CDS             6724..7197
                     /locus_tag="VF788_17225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935879.1"
                     /translation="MAGTRARSRGSGGAGLFNVVSVVILVVGVLVIGIAAALLARTLA
                     AAQSIDKKAQTIAANAGRINVATDSVIELNRTNELASSILSSARPLQGLLDTVDATAR
                     DIAGVAKSINTTAGTIKDTAGTINGTASRIDDSAGGIRHSVGTINRTTGGTGSRE"
     gene            complement(7240..9867)
                     /locus_tag="VF788_17230"
     CDS             complement(7240..9867)
                     /locus_tag="VF788_17230"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEX8935880.1"
                     /translation="MAVSESGAFDTDLRDDAEPASDVPGPGTIKRGAIRDYVSGKMVA
                     ATPEELEAVQVMSRRLVEDFGYPKEHLQTRPQWRVGTSPSASKKYPMDIVVFSSDKHI
                     PENVTIVVECKRRIRKDGIEQLHRYLDMSAACIGVWFNGEEHQYVRKVLRRDGTRVFE
                     VLPNVPRFGQRLEDIGLHRKKDLVPPSNLRAVFRDIRNHLAGNAPGITRDEPLAQQVI
                     NLLFCKIYDEIASAPRDMVSFRWGVNEEPRKVHKRILDLFDNVKVEYPDVFSDQDKID
                     LDANSIAYVVGELQTYSLLQADRDAIGEAFEVFIGPALRGAEGQFFTPRNVVRGLVEM
                     VDPRPGEMVIDPACGSGGFLTVALEHVWRGLDKEGEQKDWSPTLLERRKREVATRTLR
                     GLDKDAFLARCTKAYMAILGDGRGGVFRVDSSLQPCEEWSAQVQDKVQLGAFDVVLTN
                     PPFGKKIRVTGRTTLEQYDLGHVWVTNKETGEKEPTDRVQRDQPPQLLFVERCLQLLK
                     PGGRLGIILPESLFGSPSYAHIVRWLDKQAAILAVAAMPEPLFKTSGKAGTHTKVCMV
                     VLRKRPFSDNEELIFMADAKWCGHDSRGNTTLRKEGDKELLLDDVPVVARNYVNFKDS
                     GLVPEDHLGFMQPRAKIINTVLVPKYYDPELAAQIRALEATHEMPALGGFIQSGAITV
                     TTGIEVGKMAYGTGPVPFIRTSDLSNWELKADPKHGVSVELYEELKKQHPDRFDVQAG
                     DILMVRDGTYLIGTSAVISSLDTRILYQSHVMKIRVNDKAAVDPWLLFAALNSPIAKR
                     QIRAKRFTQDIIDSLGNRLAEVRVPLPHHVGLRRRIAQEVQASVQRRAELREATRLLT
                     LEIEGVTAMEDLSMLEEAT"
BASE COUNT         1779 a         3368 c         3246 g         1721 t
ORIGIN      
        1 ctcgaacgtt ctgacgacct ggcaaagatg gatcgacgta tcaccgagat caggcaccta
       61 ctcgccaatc tggatgcgcc gcaggaccca caggaccctc tgcacgggac cctggtcacc
      121 ttgcgattcg cagatggcac cgtagccacg ctccgagtcg tcgcgatcac cgaggaagcc
      181 ccggcagacc gtcaggacga gatactgact gccgacagcc cgctcggccg ggccctcgcc
      241 ggccgccgcg cgggtgacac gatcacctac agtgtccctg acggcgaagc ccaagcccag
      301 gtgatcgcgg tgcaagcgcc gactacatca tccgggtagg aatgtgctca gtgttcaggc
      361 acccgggctg attgtattcg gatccggcca cgatgggaga gccatggata tcacccagct
      421 gatcctcgat gaccacgatg agcagcggcg gctcttcgcg atcctcgagc agatcgatcg
      481 caccgacacc gcggctctga gtgctctctg gacgcggctc gccgcttttc tggaggtgca
      541 cgccgcggct gaggaggaat tcttctaccc ggaactgctg cgcgtgggcg ctggggctgg
      601 tggggtggat agcccgcaag ccgagaccaa ggacgcgatc gccgatcaca acgagatccg
      661 cgacgcggtc gtcgcggcgg ggggtcacga ggttggcagc gacgagtggt atgacgccgt
      721 caccaaggcc aacctggcca acagcgatca catggccgaa gaggagcgcg agggccttac
      781 cgacttccgc cgccacgccg cgctgcagct gcgccacgac ctggccgtcg ctttcgccac
      841 cttcgaggcc acgcatttcg gccgcatcac gccggtggac aaggaccccg agggctacgt
      901 ccgcgaggtc gaagcgaaga tcgcggcaac caacgaccag gacaacgacg gcgccaccaa
      961 gccggagggt tcactgggaa tcggtgatct gaagggacgt tgaccacggg tgcaaggagg
     1021 ggtacatcgt ccctcgccgc ccggtggcat ggaggtgact gtgacgattc cgccgtcggg
     1081 tgaccagttc gagatcacca atggtgacca tcgggccacg atcgttgagg tcggcggtgg
     1141 aatacggggg tacgaggtgg gtgggcgcct tgtccttgac ccttatcccg tcgacgccat
     1201 gtgcgacggg gcgcacggct cggtgctcgt tccctggccc aaccgcctcg ccgacgggcg
     1261 ttaccggttc gatggggtcg actaccaggt cgcgctgacc gagccggata aggccaacgc
     1321 catccacggc ttgttgcgct ggcgttcctg gcgcgctgtg gagcgcacac cgagccgtgt
     1381 cgtcatgggg acaaggctcc atccggtgat gggatatccc ttctgccttg atgtcagcgt
     1441 ggcctacgag ctgggcgacg gtggtctggt tgtggcgacc acggcgacca atgttgggcg
     1501 gacgccctgc ccatacggct gcggccagca cccctacctg tcgccgggga ccgggctgat
     1561 cgatgcttgc accttgcagt tcgacgcccg gacccgggtc gtgaccgacg acgagcgcca
     1621 attgccaacc ggcactgagc ccgttgccgg cacgcccttc gacttcgccg ggggtaggcc
     1681 cctggggaat cagaaggtgg acttcgcctt caccgacctg gcccgtgacg aggccgggcg
     1741 ggcgtgggtc cgcctctcgg cgcccgacgg gcaccgggtc gagctatggg tggacgagca
     1801 ttatcccttt gttgagatct acaccggtga cactcttgag ccgcaccgtc gccgtcaagg
     1861 gctcggaaca gagccgatga cgtgcgcccc gaatgccttc cagagcggca aggggctggt
     1921 acggctggag ccgggccagt cgctgacggc gacgtggggt gtccaactca tctgaccgct
     1981 gctggcctcg agctggcggg tgagtcatcc gccctaccaa atcgtggagg ctgacgatga
     2041 ccgagacagc gcctcccgag cagcggcggg ctgccgtggc acaggtcggt gggcccagcg
     2101 agacgctctc caacgagaaa atcaacggct tcattcagga acagcttgac gcggtcgacc
     2161 tgaacggacg cagcctgtgc gttctggtgc ccgatggcac ccgcagctgc ccgctgcccc
     2221 agctgctgtc cgcggtccac cacgccgtgc acggccgagt cacccggctg accgtcctcg
     2281 tcgcgctcgg tacccacgcc ccgatgaccc agccggcgct cgccactcac ctgggctatc
     2341 cccaaggtga actgcagcag cgctacccgg gcacgaccgt gcgcaatcac cagtggtggg
     2401 atccagccac cttcgtcgac gtcggcacca tcccggccga tcgcatcggc gagctgtcca
     2461 gcggcatgct gcaccagaag gccgacgtgc ggatcaaccg agccgtggtg gaacacgatc
     2521 tcacgatcat cgtcggtccc gtcttccccc acgaggtcgt cggcttctcc ggcggcaaca
     2581 agtacctgtt ccccggcgtc tccggccgcg agctcattga tatctcgcac tggctgggtg
     2641 cgctgatcac cagcgccggg atcatcggca cgcgcggcac caccccggtc cgggcgctca
     2701 tcaacgaagc cacgtcgatg gttcccgggg agcggctcgc gctgtgcgtc gtcacccagc
     2761 ccagcagcgc gttcacccag ccagaggagg tcgctcaggc cgcagcgttc cagaggtcgg
     2821 cggacgtgcc gctggtcgac gagcccgccg cgcgcctgca cgccatgacg ttcggcgagc
     2881 cccatgccgc ctgggcggct gcagtggacg tctcggctgc gacccacatc cgctacctcg
     2941 acgcccccgt gcgccgcgtg ctctccatcc tccccaccag gtacgacgac atgtggaccg
     3001 gcgccaaggg cttctacaag gtcgaaccga tcgtcgccga gggcgggcag gtcgtcatct
     3061 acgccccgca catccatgag atcagcagca cccacccgca gatggccgag ctcggctacc
     3121 actgccgcga ctactacgtc aaacaatggg accggttcaa gaactaccac tggggggacc
     3181 tggcacattc cacccacctg cgcggcgccg gcacatacga cgaggtccac ggcgaacgcg
     3241 gtcgcgtcac cgtgaccctg gccaccggca ttcccgaagc gcaggtacgg gcggtgaacc
     3301 tgggctacct cgagcccgcc gagatcgatc cggacgcgtg ggccgcggat ccggacacgc
     3361 tcgtcgttcc cgacgcgggc gaggacctct tccgcctccg ctgatccgcc ggatcccgtg
     3421 cggcgtccgg tgctcacgcc gacggcgcga tgaccgcgtc gtacagcgcc tgggagcgct
     3481 cctgcagggt gcggtagtac ggggcgttgc cggccgtcgg ctcgtaggtt gtcccggtgt
     3541 ccaccggcgc ccgtgacacg tccggcgcga tcgtctccag cgcgatcagg gccgtgccgt
     3601 ggagggtggt gcgcttcatc gtgacgtgct cgaccggtgc gccgagcgca tcggccagca
     3661 cctgcagcca ggccggcaga tcgttggtga cccggccgct ggccacgatc cggcgggcag
     3721 gcccggccac ctgctggagc tcacgggcga cccgggcgta gatcatcgcg acgccctcaa
     3781 gggcgccgcg gaacagctgc ggcgcagcgg tgtccaccga gatctcggcg aagacggcac
     3841 gggcgtcgcc gacccagccg gtgcttcgct cgccggtgag gtagggcagc accagcggcg
     3901 tgtcagactt cggagctgcc agcatgaccg cttccgtgtc gagcggcgcg ccgggtcggt
     3961 cgacggccaa cgtctcctgc agccaggtga ccaggcggcc gacgtcgctc aacgcgccgc
     4021 cgaccaggct gcggctggcg tccacccgat agcaccacaa gccagccggg acggcctccg
     4081 ggttcccgct caccagcacc cgcatggcgc cggaggtggc cgccgccgcg gcgatcgtcg
     4141 actcatcggc cgcgccggcg ccgacattgc tggcgaagcc gtcggcgacg accgggaacc
     4201 aggccgagcc ggcgacaccc ggccagcgcc tcgcggcacg accgtcgtcg tgcagggacc
     4261 aacctggctc gcgaatctcc gagagctgcc ccgggtcgat cccggcggcg tcgagcatcg
     4321 gttgatccca gcggcccgtg cgccggtcga gcatgccggt ccaggctgcc gtcgaggttc
     4381 cgatggctgt gtcgccgagc agccgaaggt ggacgtactc gccgatggag agccatcgcg
     4441 tgacgcgtgc gaagacgtcg gcggcgctct cgcgcagcca gcgaaccctg gccggtaggt
     4501 agctggtgtg caggcgcgcg ccggtccggt cgtggacagc gccctcgtcg agctcggcac
     4561 gcagttgcgc cagctgcggt gcgcaccgcg agtcggcgta ggtgtagcac ggggtcagcg
     4621 cagtgccggc ggcgtccaca ccgatgaggg acgaggcgaa ggtgtccagg gccacgccgg
     4681 ccacgcggac gccgggacgg cagctcgtca ccgcggtgat gagctggctg atctcgttca
     4741 cgacgaggtc gggatcgatc tcggacgtgc cgtccgcagc gctcgtgaaa cggtggggga
     4801 tcttgtggcg cacgccgtgc accggccgcc ccgccgcgtc gtacaacccg ccgcgagagg
     4861 ccgtcgagcc gacgtcgagg gcgagcacga agggctcgtg ggcccggtcg agttccaccg
     4921 cggtcccgga cttgggcatg ggggctcctc ggctggagac ggcagcgcct catcgccatg
     4981 aggggtgcgc ctccgattcg ttgacctgcc atctcaccag ggaagatacg gtcgcgggcg
     5041 gtcaggccag ttgtcctcgt tgcgccggta caccgcgatc gggcgctcgc ctacccggaa
     5101 ggtaaaccga ccggcctcgt ccatgacctc accatcagtg gccagatttg cctggccacc
     5161 gaccaactcg acgtcaagtg acggcgcctc gcgttgcaca taggtccgag tgtgccgcag
     5221 ggcacccagc gcgagcgcga tgatcgcccg ggcgcgggag aaccgccggt ctgcgcgcag
     5281 ataacggata tcgagcaggc cggagtccag ctgcggtcgc cacgccggca ccatgccgcg
     5341 cgggtggtac ggcccgttgc cgacgaacag cgtccacagc cgctgctcct ttccgtccaa
     5401 cttcacccgc agcggctggg cgtggcgcaa tgacgcgacg agcgcagccg cgaacgccgg
     5461 ccactttccc catctgcctt cccacttctc ccgcaaccgc actagatcgg agtaaccgcc
     5521 gaggctcgcg gtgttgagga agtaccgcgt gtgcggcgga cgtcctccgc cctggatgtc
     5581 caccacacca aggtcgacgg cgactgcctc gccggcctgg gtggcgtcaa cggcctcctg
     5641 caggtcgtac accccgacat cgcgggcgaa gtggttgagg gtgccagtcg gtaccacgac
     5701 cagcggcaag ccgcgccggc ccgcgacggc cgctgcggcc gccaccgtcc cgtcgccacc
     5761 agcgacaccg agagcccgcg cagcagcacc ctcaccgcgc gcgtcctcgc aggtgagggc
     5821 agcctcgaac tgcttttgga ggtccactcc ttccgcggtc cgcagcaccg tcgcggccgg
     5881 caacgcctcg gctatctcct tggccggatc gtattcggga tcgccggatc gctggttcgc
     5941 cacgagcacc agacccgcgc cgtccggcaa caccggcgcg tcaccgtgcg atcgcgcccg
     6001 ggcctcgtcg atcgttcgca ccggccacca gcgccgggtg ctcagcgcga taccggaacc
     6061 caccgccgcc cccgccacca cgtccgaggt ccagtgcacg ccgacgtgga cgcgggagta
     6121 agccacggca acagccagcg gagcgatggc caagcctgcc ttgggacact ccatcgcgac
     6181 agctgtggtg aatgccgccg ccgacgcagc gtgaccggac ggaaacgacg acgaggtcgg
     6241 tggatcgggt agcacctggt aggcaggcag ttccttcgcc gccgggcgac gtcgcgggag
     6301 caacggtttg aacaccgcgt tggtggtgaa gctggccgcg gcgatggcca ggacgccgcg
     6361 gagcgcggcg cgcctggtgg cacccttcct gatggccagc ccggccgcta tgacgaacca
     6421 cagcatgctg tggtcggcca tagcgctcag gcccttcatc acgccgtcga acgagctggg
     6481 cggctgccgc gcgatccacc gcgaaatggc gagatcaact tcgttcacgg cgtccgaccg
     6541 gcgccagcac cactcgatca cagtcgtgac aataggcgaa cctcgcacgc cacgacgccg
     6601 gtggccagag cgcggcgccg gaatgcccag ccagctgatg ttggccgatc accgggccat
     6661 ggtgacaggg tctcgcggga cgtaagctag gaacaatcct gcgctgagga agtggtggtg
     6721 aaggtggcag gaacgcgtgc tcgatccagg ggatcgggag gagctggact gttcaatgtt
     6781 gtcagtgtcg tcatcctcgt tgtcggcgtg ttagtgatcg gcatagcggc cgccctgctc
     6841 gcccgcacgc tggcggcggc acagagcatc gataagaagg cacagaccat cgcggcaaac
     6901 gccgggagga tcaacgtcgc gaccgactcg gtcatcgagt tgaaccggac gaatgagctg
     6961 gcatcctcga tcttgtcgag tgcgaggcca ctgcagggcc tgctcgacac ggtagacgcc
     7021 accgcccgag acatcgccgg cgtggcgaag tcgatcaata caaccgcggg aaccatcaaa
     7081 gataccgccg gtacgatcaa cggtacggct agcaggatcg acgacagcgc tggcggcatc
     7141 cgccacagtg tcgggacgat caaccgcacc accggcggca cggggtcacg agagtagaga
     7201 cactgcgcgc gctcaggcgt catcccgtcg cgactccggc taggtcgcct cttcgagcat
     7261 cgaaagatcc tccattgccg taactccctc gatctcaagc gttaaaaggc gggtcgcttc
     7321 acgcaactcc gctcggcgct gcaccgaggc ttgcacctcc tgagcaatgc gtcttcgcaa
     7381 ccctacgtga tgtggaagag gaacacgcac ctctgcgagg cggttaccga ggctgtcgat
     7441 gatgtcctga gtgaaccgct tggcccgaat ctgccgcttg gcgatgggtg agttgagtgc
     7501 tgcaaagagc agccacggat cgacggccgc cttgtcgttt actcggatct tcatgacgtg
     7561 ggactggtag aggattcgcg tgtcgaggct gctgatgaca gcggaagtcc cgatgaggta
     7621 agtgccgtct cgcaccatca gaatatcacc cgcttgcacg tcgaagcggt ccggatgttg
     7681 ttttttcaac tcttcataga gctcgacact tacgccatgt ttcggatccg ccttcaactc
     7741 ccagttcgat aggtcactag tgcggatgaa cggcaccggc ccagtgccgt acgccatctt
     7801 gcccacttcg atgccggtcg tgacggtgat cgcacctgac tggatgaacc cgcccagtgc
     7861 cggcatctcg tgagttgctt caagagctcg aatctgtgcc gctaactcgg gatcgtagta
     7921 cttcggcacc aagactgtat tgataatctt tgcccgaggt tgcatgaagc caaggtgatc
     7981 ctctggtact agtccactgt ccttgaagtt gacgtagttt cgcgcaacga caggcacgtc
     8041 gtcgaggagg agttctttat caccttcttt gcgcagggtc gtatttcctc gggagtcatg
     8101 gccgcaccac ttggcatccg ccatgaagat cagctcttcg ttgtcagaaa aaggccgctt
     8161 acgcaggaca accatacata cttttgtgtg agttccagcc ttgccgctgg tcttgaagag
     8221 cggctccggc atggccgcaa cggccaggat ggcggcttgt ttgtccaacc acctcacgat
     8281 gtgtgcatac gatggactac cgaacaggct ctcaggtaag atgatgccga ggcggccgcc
     8341 aggcttaagt aattgtaaac aacgctcaac aaacaacagc tgtggtggct gatctcgctg
     8401 gaccctgtct gtgggttcct tctcgcccgt ctccttgttc gtaacccata catgaccaag
     8461 gtcatattgc tctagcgttg tccgaccagt aacacgtatc ttcttgccga atggtgggtt
     8521 ggtcagcacc acatcaaacg ctccgagctg caccttgtcc tggacctggg cggaccattc
     8581 ttcgcagggt tgcaagctgc tgtcaactcg gaagacgccg ccccgtccat caccgaggat
     8641 ggccatataa gctttggtgc accgggccag gaaggcatcc ttatccaggc cacgcagcgt
     8701 tctggtggct acctcacgct tgcgtcgctc caacaatgtc ggagaccaat ccttttgctc
     8761 gccctcctta tccaggcctc gccaaacgtg ttcaagtgca acggtcaaga agccgccgga
     8821 gccacatgcg ggatcaatga ccatctcacc aggtcgcggg tcgaccattt ccacgaggcc
     8881 gcgcacgaca ttacggggtg taaagaactg gccctcggcg ccgcgcagtg cggggccgat
     8941 gaagacctcg aaagcctccc cgatggcgtc cctgtcggcc tgtagcaagc tgtatgtttg
     9001 cagctcgccg acgacgtagg cgatactgtt tgcgtccaga tcgatcttgt cttgatcgct
     9061 gaacacgtct ggatactcga ccttgacgtt gtcgaacagg tcaaggatcc gtttgtgtac
     9121 tttgcgtggc tcttcattaa cgccccaacg gaagctcacc atgtctctgg gcgctgaggc
     9181 gatttcatcg taaattttgc agaagagcag attgatgacc tgttgagcca acggctcgtc
     9241 acgagtaatc cctggagcat tgccggctag gtgattacgg atgtcacgga aaactgcacg
     9301 taagttgctc ggtggtacta agtccttttt gcgatgcagg ccgatgtctt caaggcgctg
     9361 gccgaacctt ggcacattag gtaacacctc gaaaactcgc gtgccatcgc gacgcagaac
     9421 cttgcggacg tactggtgct cctcaccatt gaaccaaact ccgatgcaag cggccgacat
     9481 atcgaggtac cggtgcagct gctcaatgcc atctttacgt atccgacgct tgcactcgac
     9541 tactatggta acgttttcgg gtatgtgttt gtcggaagaa aacacgacaa tgtccatcgg
     9601 gtatttcttc gatgcgcttg gtgaggtccc aactcgccac tgcggtcggg tctgaaggtg
     9661 ctccttcggg taaccgaagt cctccaccag gcgacgcgac atcacctgga cggcctcaag
     9721 ctcctcgggg gttgccgcaa ccatctttcc ggacacgtag tcccggatgg caccgcgctt
     9781 gatcgtgccg ggaccaggga cgtccgatgc cggctccgcg tcgtcgcgca ggtcggtgtc
     9841 gaaggcccct gactcactca cggccacaag gtaacgtcca ccggtgtcga tctggccgac
     9901 gacccgcggg gtagcccgct agtgcgatgc cgacttggtc acctgtgaga ctgcggttct
     9961 ggacgcacgg ctggccaccg ctgctcagtt ccgtcgaacc cggcagcccg ggcccaggca
    10021 tcataggcct cagccggggt tggtcggtgg tttggcggag cagtcaccac cggcgcagat
    10081 ggttgacgcc ggatggtgat ccgatgctcg ccct
//
LOCUS       DASVXZ010000813         4635 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_946869, whole genome shotgun sequence.
ACCESSION   DASVXZ010000813 DASVXZ010000000
VERSION     DASVXZ010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4635
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_946869"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>4635)
                     /locus_tag="VF788_17235"
     CDS             complement(<1..>4635)
                     /locus_tag="VF788_17235"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8935881.1"
                     /translation="RLGDREHALLIVMHHIITDGWSMGVLVHDLCTLYRAAAGHEVAD
                     LAALPVQYADFAAWQRAALSSPTLDEGLAYWRRQLDGVAPLELPTDRPRPAVRTSAGA
                     MHEFVVSAEVIKALEAIGTQQDSTLFMTLVAACQLLLSRWSGQDDIAVGTAVSGRERA
                     DVENLIGFFVNTLVLRSAVDSGHSFTEFLSSVRDTVLGALAHQDVPFERLVDEFAPVR
                     DTSRTPLFQVMVVLQNNAHRAPELPGLESEELALPSVTASFDMTLEFRKRADVLEGAL
                     QYNTDLFDPATVERMVGHLLVLLEGIAIGPDRPVGVLPVLTPAERDRLLVEWNDTRQI
                     RPTATLPELLSNQVTRTPDAVALVAQGAELTYRELNERANRLAHWLIARGVGPEQFVG
                     LALERSAELIVALLAVTKTGAAYLPIDVNHPPARIAFICADANPAIVLCTLRSAGRLP
                     GDVTRLVIDDTQAIEQLGVCSAAEVADAGRIQPLLDSHPAYAIYTSGSTGRPKGVVIA
                     HRSVVDLVGWAAGEFGTSGLSRVLASTSLNFDVSVFEIFCPLCVGGTIELVRDVLALG
                     EPGAPERVASLVSGVPSALSQGLSLGAAVRAETVVLAGEALSVTAAQQIQAATSCRRI
                     ANIYGPTEATVYVTAWYSEPGARVDQAPPIGRPIANTQVYVLDSGLRPVPIGVIGELY
                     LAGAGLARGYLHRPGLTAARFVANPFGGPGERMYRSGDLARWTAGGELEYLGRVDDQV
                     KVRGFRIELGEIETVLVSHPGVRDTVVTAREDQPGAKRLVAYLVPTSDGRPTTAELRA
                     HISETLPDYMVPALFVTLDELPLGPTGKLDRNALPAPDQLITPVAEYVAPRTDTERVL
                     ADILGQVLGAERVGVHDNFFELGGDSILSIQVVSRARQEGVRLNTKDIFFRQTIAELA
                     AGLGSEPVTDVVADEVLVGPAPLTPIQHWFFATYGALAHFNQSFVIELTEDLDQDALS
                     AAMDAVVAHHPALRMRFSQRAGQWSQEAAAASHVVVERHDFSALAQADLLAAMEQAAW
                     AAASGLDITGGPVMRVVLFDRGISQRPQLLIVVHHLVVDGVSWRILLDDLETAYHQAR
                     GGRSVELEPVSTAFTQWAHRLADHVQGGGLDGDLEYWSALSQDVPAQLPVTRAGVNTA
                     GSARTVMVQLSRDETDALLHRVPGVYRTQINDVLLSALGRVLASWTGRDRVLIALEGH
                     GREEIMPGADLSRSVGWFTSQFPVVLNVEHAGWGELLKSVKEQLRAIPHRGLSYGALR
                     YLNPDSGLGEDVSPQISVNYHGQWTATGQSGGLYQGWAGALAPDHAPESVRPYLLDVI
                     GVVADGELQLSWTYSENLHDEAIIAELASETLEALRHIVAHCTDPDAGGCTPSDFPLA
                     RLSQTQLDALVGAGRDVEDLYPLTPLQAGMIFHSLLDPSSAAYVDQIQLRISGISDPR
                     AWGAAWQRVVERTPMLRSAVVWEGVDEPVQVVHRRVVLPIAYHDWCRLPEREHQEELA
                     RVAAAERSAVDPGVPPLLRLVIARVSEDEVLLVWTHHHVILDGWSMGTVFA"
BASE COUNT          972 a         1630 c         1296 g          737 t
ORIGIN      
        1 gcgaacaccg tgcccatgct ccacccatcg aggatcacgt ggtgatgggt ccacaccagc
       61 aggacctcgt cctcggacac ccgagcgatc accaaccgca acaacggcgg cacacccgga
      121 tccaccgctg agcgttcggc cgcggcgact cgagccaact cctcctggtg ttcccgctcg
      181 ggaagccggc accagtcgtg gtacgcgatc ggcagcacaa cccgccggtg cactacctgc
      241 accggttcat cgactccctc ccagacgacg gcgctgcgca gcatcggggt gcgttccacc
      301 acccgctgcc acgccgcccc ccaagcacgc ggatcgctga tccccgaaat ccgtaactgg
      361 atttgatcaa catacgcggc tgagctggga tcgagcaggc tgtggaatat catcccggcc
      421 tgcaacgggg tcaacgggta gaggtcctcc acgtcgcggc cagcgccgac cagcgcatcg
      481 agctgggtct gcgacaaccg ggccaacggg aagtcagacg gagtgcaccc gcccgcatcc
      541 gggtccgtgc aatgcgccac gatgtgccgc aatgcctcaa gcgtctccga ggccaattcc
      601 gcgataatgg cttcatcatg caaattttcc gaatatgtcc aactcagttg taattcacca
      661 tcagcgacaa ccccgataac atcgagcaga tagggacgga cgctctccgg tgcatgatcc
      721 ggcgctaacg cgccagccca accctgataa agtccgccag actgccctgt ggccgtccac
      781 tgaccatgat aattcacgct gatctgcggg gagacatcct cacctaaccc actgtccggg
      841 ttcaggtacc gcaacgcccc atagctgaga cctcgatgcg gaatagcccg caactgctct
      901 ttcaccgatt tcagtaactc gccccacccg gcgtgctcca cattcagcac caccgggaac
      961 tgggaggtga accaacccac cgagcgagac agatccgccc ctggcatgat ttcctcgcgg
     1021 ccgtgtccct ctagcgcgat cagcacccga tcccgcccgg tccacgaagc cagcactcgt
     1081 cccaacgcgc tgagcaacac atcattgatc tgagtgcgat acacccccgg cacccgatgc
     1141 aacaacgcat ccgtctcatc ccggctcaac tgcaccatca cagtccgcgc ggaaccggcc
     1201 gtgtttactc cggcccgagt aaccggcagc tgcgcgggca cgtcctgcga caatgcggac
     1261 caatactcca gatcaccatc aagcccaccg ccctgaacat ggtccgccag ccggtgggcc
     1321 cactgcgtga acgcggtgct gaccggttcc aattcgaccg aacgcccacc gcgggcctga
     1381 tggtaggcag tttcgagatc atccagcagg atccgccagg acaccccatc aaccaccaga
     1441 tgatgaacaa cgatgagcag ctgaggccgt tggctgatcc cacgatcaaa cagcaccacc
     1501 cgcattaccg gaccgccggt gatgtccagg ccggacgcag cggcccacgc ggcctgctcc
     1561 atcgccgcta gcagatctgc ttgcgccaga gccgaaaagt cgtggcgctc caccaccaca
     1621 tggcttgccg ctgcggcctc ctggctccac tgacccgcac gctgggaaaa acgcatccgc
     1681 agcgctgggt ggtgcgccac caccgcatcc atcgcagctg ataatgcatc ctgatcgagg
     1741 tcttcggtca actcgatgac gaaggactga ttgaaatgcg ccagcgcccc gtacgtagcg
     1801 aaaaaccagt gctgaatcgg cgtcaatggg gccggaccca ccagcacctc atcagccact
     1861 acgtccgtaa ccggctctga ccccaggccc gcagcaagct ctgcgatggt ctgccgaaag
     1921 aagatgtctt tggtgttcag ccgcaccccc tcctgacggg cgcgggaaac aacctgaata
     1981 ctcaggatcg agtctccacc caactcgaag aagttgtcat ggactccaac tcgttctgcg
     2041 ccgagtacct gccccaaaat atcggcgaga acgcgttcgg tgtccgtccg cggggcgacg
     2101 tactcggcca ccggagtgat gagctggtcc ggggcaggta atgcgttacg gtccagtttg
     2161 ccggtcgggc ccaggggcag ttcgtccagt gtgacgaaca atgcgggaac catgtagtcg
     2221 ggcagggtct cgctgatgtg ggcgcggagt tctgcggtcg tcgggcgccc gtcgctggtg
     2281 gggaccaggt aggccaccag ccgtttggcc cccggctggt cctcgcgggc cgtgaccacg
     2341 gtgtccctta ccccgggatg gctgaccagc acggtctcga tctcacccaa ttcgatgcgg
     2401 aacccgcgga ccttgacctg gtcatcgacc cggcccagat actccaattc cccaccggcg
     2461 gtccagcgcg ccaggtcccc gctgcggtac atccgctccc cgggcccgcc gaaggggttc
     2521 gccacaaaac gggccgcggt cagccccgga cgatgcaggt aaccgcgagc cagcccggcc
     2581 ccggccagat acaactcccc gatcaccccg atcggcaccg gccgcaaccc cgaatcgagc
     2641 acgtacacct gggtattggc aatcggccgt ccgatcggcg gtgcctgatc aacgcgggcg
     2701 cccggctcgg aataccaggc ggtgacatag accgtggcct cggtcggacc atagatattg
     2761 gcgatccgcc ggcacgacgt cgccgcctga atctgctggg ccgccgtaac cgagagcgcc
     2821 tcccccgcca gtacgaccgt ctccgcccgc accgccgccc ccaaggacaa accctgagac
     2881 aatgccgagg gcactccgct gactagactc gccacccgct caggagctcc gggctcaccc
     2941 agggccagca catctcggac caactcgatg gtgccgccca cacacaacgg gcagaaaatt
     3001 tcaaacaccg acacatcaaa attcagcgac gtcgaggcca gcactctcga caatcccgag
     3061 gtcccgaatt ccccagcggc ccacccaacc agatcaacca cactccggtg cgcaatcacc
     3121 acacccttag gacgccccgt tgaccccgag gtataaatcg catatgcggg atgggaatcc
     3181 aacagcggtt gtatccgtcc agcatcagcg acctcagcag cagaacaaac cccgagctgc
     3241 tcaatagcct gcgtatcatc aatcaccaat cgggtcacat caccaggcaa acggccggca
     3301 ctgcgtagag tacacaacac aatagccggg ttggcgtcgg cacagatgaa agcgatccgc
     3361 gccggtggat ggttcacatc gatcgggaga tacgccgcac cagtcttagt caccgcgagc
     3421 aacgccacta tcagttccgc agaacgctcc agggcaaggc ccacaaactg ctctggaccg
     3481 accccccggg cgatcagcca atgcgccagc cggttggctc gctcgttgag ctcgcggtag
     3541 gtcaattctg caccctgggc taccagagct actgcatctg gcgtgcgggt aacttggttg
     3601 cttaacaact cgggcaaggt tgccgtgggg cggatctgac gggtgtcatt ccattccacg
     3661 agcagccgat cccgctccgc gggggtcaac acgggcagca cacccaccgg tcgatcagga
     3721 ccaatcgcga taccctccag caacaccagc agatgtccca ccatccgctc gacagtggcc
     3781 ggatcgaaca aatcggtgtt gtactgcagc gcaccctcga ggacatcggc tcgtttccgg
     3841 aactccagag tcatgtcgaa gctcgcggtc acagagggca atgccagttc ttcgctctcc
     3901 aggccgggca gctcgggcgc ccgatgggca ttgttctgca acaccaccat gacctggaat
     3961 aacggcgtac ggctggtgtc ccgaaccgga gcgaactcgt ccaccaggcg ttcgaatggc
     4021 acatcttgat gcgccaatgc acccagaacg gtgtcccgca cgctactcag gaactccgta
     4081 aagctatgac cggagtccac cgcggagcga agcaccaggg tgttgacgaa gaatccgatc
     4141 aagttttcca cgtcggcacg ctcacgaccc gagaccgccg tgccgacggc gatatcgtcc
     4201 tgccccgacc agcggctgag cagcagctgg caggcggcga ccagggtcat gaacagcgtg
     4261 ctgtcctgct gcgtcccgat ggcttcgagc gccttgatga cctcggccga taccacgaat
     4321 tcgtgcatgg caccggcaga cgtgcgtacc gctggtcggg gccgatcggt cggcaattcc
     4381 aacggcgcga caccatcgag ctggcggcgc cagtaggcca gtccctcatc gagcgtcggg
     4441 ctggacagtg ccgcacgttg ccaggcagcg aaatcggcgt actgtaccgg cagtgctgcc
     4501 agatcggcca cctcgtgacc cgcagccgcc cggtaaagcg tgcacaggtc gtggacgagc
     4561 acacccatcg accagccatc ggtgatgatg tgatgcatca cgatgagcaa tgcatgctcc
     4621 cggtcaccca accgc
//
LOCUS       DASVXZ010000814         5613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1664861, whole genome shotgun sequence.
ACCESSION   DASVXZ010000814 DASVXZ010000000
VERSION     DASVXZ010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5613
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1664861"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VF788_17240"
     CDS             complement(<1..333)
                     /locus_tag="VF788_17240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase modulator"
                     /protein_id="HEX8935882.1"
                     /translation="MSTGVIDPDFLALPLRPLADAALARARELGAEHADVRIERITGQ
                     LLRLRDGAVATAQDSTTIGLAVRVIVAGTWGFASHLELTPASAAATAQRAVEVARALH
                     PLNAERVEL"
     gene            959..1198
                     /locus_tag="VF788_17245"
     CDS             959..1198
                     /locus_tag="VF788_17245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935883.1"
                     /translation="MRISDVFTLGGGYGQDGGYYNNDSNSYSSDNPCYGDRSYGGCER
                     PIGPFNYGPRGDRKGLAHILGSPRDGGGLLGIFHH"
     gene            complement(1537..1797)
                     /locus_tag="VF788_17250"
     CDS             complement(1537..1797)
                     /locus_tag="VF788_17250"
                     /inference="COORDINATES: protein motif:HMM:NF040429.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6457 domain-containing protein"
                     /protein_id="HEX8935884.1"
                     /translation="MNTLKEWVDLVCRELEITAVVSPEAMQSRVLDMSRDVAHQVARP
                     AAPLTAYLLGLAAGRSGDPEATAEEFAARLCVLAQRWGQDHQ"
     gene            1886..2524
                     /gene="trmB"
                     /locus_tag="VF788_17255"
     CDS             1886..2524
                     /gene="trmB"
                     /locus_tag="VF788_17255"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEX8935885.1"
                     /translation="MTAGQERAWERSWEQWGTDLADLPDGPLATAEWFGRVAPVVLEI
                     GSGMGESTALMALDAPEFGHLAVEVYQPGLAQLLLRIEQCGITNLRLLRGDAYQLLHK
                     HLTEESLHAVRIYFPDPWPKRRHHKRRLVTSEFVTLVASRLAPGATLHLATDWEPYAE
                     EMLAACTAERTLRNIAAGERFAARPAWRPVTKFERRAQAEGRAVRDLLFAKV"
     gene            2618..3253
                     /locus_tag="VF788_17260"
     CDS             2618..3253
                     /locus_tag="VF788_17260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010235818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEX8935886.1"
                     /translation="MNPAPAPTVPVTLLVWDAPNIDMSLGSILGGRPSSASRPRFDAL
                     GRWLISRASPDTEPEATVFTNVASGSTDFVRPWVEALRNTGFAVFAKPKIDESDIDED
                     MLTHIRSRHEQGVLSQLLVASGDSRAFREPLEELVVQGVRVTVLGFREHASFAVNSGV
                     LGFEDLEDIPELFLQPLPRITLETLPPEGAWLPPLRPLSSLLRHTIAEPVP"
     gene            3250..4590
                     /locus_tag="VF788_17265"
     CDS             3250..4590
                     /locus_tag="VF788_17265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009157218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX8935887.1"
                     /translation="MMRLTAPVVLPCDEQCTVLRDAVVDVDDAGRISHVGPSGTAPAA
                     AGPVLALTGILMPGLVNVHAHTAMTGLRGLGGDLPLMRWLTEVIWPAERQVDADDVRA
                     GMLVGALEMLGAGITTSVEMYFYPDAVADAVLAAGSRAVVTPGIIAAPGWDRLGTWQQ
                     MLEGVSRWIDTDGLRFGPGDRIEVGYGPHAAYTLPPEALAEAGAAAQERGALLHLHIA
                     ETAGEDTAIREAHGSVPLLLEKLGVLGSADSSRNARVLAAHAVHLSDTDIAVLSRHRV
                     GVAHCPGSNSKLASGIARLTDLRAAGIAVGLGTDGPASHDDLDLWNDTKLAALLARLV
                     SGDAAAVTAAQALLLATRGGATALGRDDLGTLHPGAWADLVHLGADDAAFAAGLDVPD
                     GQLLANLVWAAGARAVRDVWVAGERMLQAGSSTRVDVAEAHAGLRSRVSRITSR"
     gene            4735..5070
                     /locus_tag="VF788_17270"
     CDS             4735..5070
                     /locus_tag="VF788_17270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935888.1"
                     /translation="MGRHAAAQDPLHVLYIGSSADLGALRRTMEAHGAVTRARLTPEV
                     TVVVVDRSVPANHPTVLAAGSLGIPVMEPAEAIAQYASWRNRTEPTQPEPSARRPWLF
                     RDPRGQARS"
     gene            complement(5084..>5613)
                     /locus_tag="VF788_17275"
     CDS             complement(5084..>5613)
                     /locus_tag="VF788_17275"
                     /inference="COORDINATES: protein motif:HMM:NF014787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEX8935889.1"
                     /translation="LGSASEVMLSMGTADNEGFLGFSAGGRQTLTRLLDGEFVKFASL
                     WPAEATTTVEVEVAELVAALKRVSLVAQRFAPVRLAFSDGLAALSAEAEDESSAEEEL
                     EIGITGEALTIGFNAGYLLDGLSAVTTPRARLSFTEPSKPTVITPVTGFDADHPDDAR
                     DGSYRYLVMSMRLRG"
BASE COUNT          925 a         1862 c         1928 g          898 t
ORIGIN      
        1 aagctccacc cgctcggcgt tgagcgggtg caatgcgcgg gccacctcga ccgcccgctg
       61 ggcggtggcc gcggcggagg ctggggtcag ctcgagatgc gacgcgaatc cccaagtgcc
      121 cgccacgatc acccggacgg ccagcccgat ggtggtcgag tcctgtgccg ttgccactgc
      181 tccatcccgc agccgcaaca gctggccggt gatccgctcg atccggacgt cggcgtgctc
      241 ggcacccagc tcgcgggccc gcgcgagagc agcatcggcc agtggccgca acggcagggc
      301 aaggaagtcg ggatcgatca cgccagtact cacctcttcg accctagcct cgcaggccgc
      361 agtctgggga cagacggtag cgggaaatgg gctggcaact gcgatttgtg cctagaacat
      421 ggtcggtatt cggctagctg ttccgctcac gggttggcag gacccggtca cgcaccgagg
      481 tcctgcctgc ttaacacccg tgagccggtc tctgaggggt tcactgtatg tgatgactca
      541 tgtaccaaaa gttattgttg cgatcgtcag tgctatggcc tagcttcaac cctgcatgaa
      601 cacggagagt aagggggcca cgcgggtcat cttgggggac tgccaagttg tggcaacaac
      661 gccaagttgt ggcaacaacc aagctgtggc acaacacagt gcggcagact acacggtgca
      721 gcagacttac atactgccga tgtggaccgg ggcagagttc gcgatgacgt caattggcgt
      781 cgacgatggg ggcatcgtaa cgcgagaaat ttcccggggc gcacccatca tcaggtaaca
      841 gtctgagcgc cggtaccggc tgcgcggcgt tcgacgctgc gtacaacttc cctgggtctc
      901 tctggtcctc gtcgctcgca tggctactcc atcggctgaa agcgggaaag ggagcgttat
      961 gaggatctca gacgtcttca cactgggtgg cggctatggg caggacggcg gctactacaa
     1021 caatgacagc aacagctaca gcagcgacaa cccctgctac ggcgaccgca gctacggcgg
     1081 ctgcgaaagg cccatcggcc ccttcaacta cggccctcgc ggggaccgta aggggctcgc
     1141 acacattctc gggagccccc gcgacggcgg cgggctgctc ggaatttttc accactagat
     1201 cttcgcgcca caggtgatcc ggcggtggcc tcaaccctcg aggagcaagg ccgccgccct
     1261 caacccagca gcagttcaga cgttgcggcc tttgggaatc cccgccgggg tcatggtgtt
     1321 gaactagggg caaggtaggg gtgaaccccc atgtgccagg caatgtggta cggcaccgta
     1381 ggagtcgtcg gccgcacagc ctgggcgcag cgccgggacg cccagccagc aggaccgaat
     1441 tgcccgtggc gtgcaggcgg ggggccgcac gaggcgggta tccgggggga ggagggcccg
     1501 ggtcgccatt cggggggcga tccgggccct tagccatcac tggtgatcct gtccccaacg
     1561 ctgggcgagc acgcacagcc gcgccgcgaa ctcctcagca gtggcttccg gatcgccgct
     1621 acgaccggcc gccagcccga gcaggtaggc ggtgagcgga gcggccggcc gcgcgacctg
     1681 gtgcgcgaca tcccgcgaca tgtccagcac ccgggactgc atggcctcag gcgaaacgac
     1741 tgcggtgatc tccagttccc gacacacgag atcgacccac tccttgagcg tgttcatacc
     1801 gatcatcctc gcgtccacac cgccgtcagg ccaggctgta ggagtgcagg ggacgagcca
     1861 gacgatctac ccgcagcggg cacgcatgac cgcagggcag gagcgagcct gggaacgcag
     1921 ctgggagcag tggggtacgg acctcgcaga cctgccggac ggcccgctgg ccaccgccga
     1981 gtggttcgga cgagtagcgc cggtcgtgct ggaaatcggc tctggaatgg gcgagtcgac
     2041 cgcgttgatg gccctggatg cacccgagtt cggccatctc gccgtggagg tctaccagcc
     2101 cggcctggcc cagctgctgc tgcgcatcga acagtgcggg atcaccaatc tgcggctgct
     2161 acgtggtgac gcctatcagc tgctgcacaa acacctcacc gaggagagcc tgcacgctgt
     2221 ccggatctat tttcccgacc cgtggccgaa acgccggcac cacaagcggc ggctggtcac
     2281 ctcggagttc gtcaccctgg tggcatcccg gctggcgcca ggcgcgacgc tgcacctggc
     2341 caccgactgg gagccgtacg cggaggagat gctcgcggcc tgcaccgccg aacggacgct
     2401 gcggaacatc gcagctggtg agcgcttcgc ggcgcgcccg gcctggcggc cggtgaccaa
     2461 attcgaacgg cgggcccagg ccgagggccg cgccgtgcga gatctgctgt tcgccaaggt
     2521 ttgacccgcc gtttccgggc gggtcaagtg ctggtatctc agcgtcggcg cccggtgccc
     2581 gtcgctgaag tccgccgata aggcaggatc ggtgattatg aacccggcgc ctgccccgac
     2641 cgtcccggta accctgctcg tctgggatgc gcccaacatc gatatgagcc tcggctcgat
     2701 cctcggtggc cgccccagct ccgcgtcccg gccgaggttc gacgccctgg gtcgctggtt
     2761 gatctcgcgg gccagcccgg acaccgagcc cgaggcgacc gttttcacca acgtcgcatc
     2821 gggcagcacg gacttcgtgc gcccctgggt ggaggccttg cgcaacaccg gtttcgcggt
     2881 gttcgccaaa cccaagatcg acgagtcgga catcgacgag gacatgctga cccatatccg
     2941 ctcccgccac gagcagggcg tgctgagcca gctgctggtg gcctccgggg acagccgggc
     3001 gttccgggaa ccgttggagg agctggtcgt ccagggtgtc cgcgtcaccg tgctcgggtt
     3061 ccgggagcac gcctcgttcg cggtcaactc cggggtgctg ggcttcgagg acctggagga
     3121 catcccggag ctgttcctgc agccgctgcc ccggatcacg ctggaaacac tgccacccga
     3181 aggtgcctgg cttcccccgc tgcggccact gtcatcgttg ctgcggcaca ccatcgcgga
     3241 gccggttcca tgatgcggct gaccgcaccg gtggtgctgc cctgcgacga acagtgcacg
     3301 gtgttgcgcg atgccgtggt tgacgtcgac gacgccggcc ggatctccca cgtgggaccg
     3361 tcgggcacag cgccggccgc ggccggcccg gtactggcgc tgaccggcat cctgatgccc
     3421 gggctggtca acgtgcatgc gcacactgcg atgactgggc tgcgcggtct gggcggggac
     3481 ctgccgctga tgcgttggct gaccgaggtg atctggcccg cggagcggca ggtggacgcc
     3541 gatgacgtgc gggccggcat gctggtgggc gcgctggaga tgctcggcgc cgggatcacc
     3601 accagcgtcg agatgtactt ctaccccgat gcggtcgcgg acgcggtgct ggccgcgggc
     3661 agccgggcgg tggtgacgcc gggcatcatc gcggctccgg gctgggatcg gttgggcacc
     3721 tggcagcaga tgctcgaggg tgtcagccgt tggatcgaca ccgatgggct ccgtttcggg
     3781 cccggtgacc ggatcgaggt gggttacggc ccgcacgccg cgtacaccct gccccctgaa
     3841 gcactggccg aggcgggcgc ggctgctcag gaacgtggcg cgttgctgca cctccacatc
     3901 gccgagaccg ccggtgagga caccgcgatc cgcgaagcgc acggctcggt gccgctactg
     3961 ctggagaagc tcggagtgct gggcagtgct gactcttctc ggaacgcgcg ggtgctggcc
     4021 gcacatgccg tgcacctatc cgacaccgac atcgcagtgc tgtcccggca tcgcgtcggg
     4081 gtcgcgcact gccccgggtc caacagcaag ctcgcctccg gcatcgcccg cctgacggac
     4141 ctgcgtgcag ccggaatcgc cgtcggtctg ggcaccgacg gacccgcctc tcatgatgac
     4201 ctcgatctgt ggaacgacac caagctggct gccttgctgg ccaggctcgt ctcgggggat
     4261 gctgccgcgg tgaccgccgc tcaggcgctg ctgctggcca cccgcggagg agccaccgcg
     4321 ctaggacggg atgatctcgg cacgctgcac ccgggagcct gggctgatct ggtgcacctg
     4381 ggcgccgacg acgcggcgtt cgcggcggga ttggacgtcc cggacggtca attgctggcc
     4441 aacctggtgt gggcagccgg tgcccgggcg gtgcgagacg tctgggtcgc gggggagcga
     4501 atgctgcagg caggctcatc cacccgggtc gacgtcgcgg aagctcacgc cgggctgcgc
     4561 tcgagggtgt ccagaatcac tagccgctaa gcggcgtggc ggggttaact tctggcctga
     4621 atggagtaac atactcagac ttttagcagg atgtgatcag cctggtcagg ctgctctggt
     4681 cacgcctgtg gcggtaacac ctgtgatggg ctgtcgggga gaactggaga cgcggtgggt
     4741 cgtcatgcgg ccgcccagga cccgctgcat gtgctctata tcggcagttc cgccgaccta
     4801 ggagccctgc gccggacgat ggaggcacac ggagcggtga cgcgcgctcg gctcacaccc
     4861 gaggtcaccg tcgtggttgt cgaccgctcg gttcccgcaa accatcccac cgtcctcgcc
     4921 gcgggctcgc tcggtattcc ggtcatggaa ccggctgagg cgatcgccca gtacgccagc
     4981 tggcggaacc ggaccgagcc aacccagccg gaacccagtg cccggcgacc ctggctgttc
     5041 cgcgatccgc gcggccaggc ccgaagttag cccagccccg cggctagccc cgcaaccgca
     5101 tggacatgac gagatagcgg taggaaccgt ccctggcgtc atccggatga tccgcatcga
     5161 atcccgtgac cggggtgatg acggtgggtt tgctcggctc ggtgaaggaa agccgcgccc
     5221 gcggggtggt caccgcgctc agaccgtcca gtaggtaacc ggcgttgaac ccgatggtca
     5281 gcgcttcgcc ggtgataccg atctcgagct cctcctcggc gctggactcg tcctcagcct
     5341 ccgcggacaa cgctgccaag ccgtccgaaa aggccaatcg gaccggcgcg aaccgttgcg
     5401 ccaccaggga cacccgcttg agagcggcga cgagttcggc aacctcgacc tcgacggtgg
     5461 tggtggcctc ggcgggccac aaggaggcga acttgacgaa ttcgccgtcc agcagccggg
     5521 tcagcgtctg ccggccacca gccgagaaac cgaggaagcc ctcgttatcg gcggtaccca
     5581 tggacagcat cacttcgctg gccgagccga gcg
//
LOCUS       DASVXZ010000815         2541 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_768047, whole genome shotgun sequence.
ACCESSION   DASVXZ010000815 DASVXZ010000000
VERSION     DASVXZ010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_768047"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1175)
                     /gene="ppk2"
                     /locus_tag="VF788_17280"
     CDS             complement(189..1175)
                     /gene="ppk2"
                     /locus_tag="VF788_17280"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEX8935890.1"
                     /translation="MTSAEQVVNDFRHVPRGAGHSEETREALREALRSVDLLDSLQGL
                     SVRELDDDDAFLVNSDGREIATWQQDYPYAERMSRQEYERTKRFLQIELLKMQSWVKD
                     SGQRVVVLFEGRDAAGKGGTIKRFTEHLNPRGARVVALGKPSERERTQWYFQRYFSQL
                     PAAGEIVLFDRSWYNRAVVERVMDFCTPTEYREFMEQTPGLEQALVDSGIHLIKLWFS
                     VSRAEQRTRFTIRVIDPLRQWKLSPVDLAALDRWDDYTQAKEAMFQCTDTPAAPWTVV
                     KSNDKRRGRIAALRWVLSTLDYPTKDTDVVSTPDPLIVGPPAQIYEQSERSS"
     gene            1317..1598
                     /locus_tag="VF788_17285"
     CDS             1317..1598
                     /locus_tag="VF788_17285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005438300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEX8935891.1"
                     /translation="MNGYIANKGALLARLARIEGQVRGLSRMVETDKYCIDLLTQVSA
                     TTRALQAVALELLDDHLKHCVIEAATQGGELAEDKVREATAAITRLVKS"
     gene            1654..>2541
                     /locus_tag="VF788_17290"
     CDS             1654..>2541
                     /locus_tag="VF788_17290"
                     /inference="COORDINATES: protein motif:HMM:NF015715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEX8935892.1"
                     /translation="MSVVNAIGQSLYEAFLMFWGTLWALVLGFGLSGAVQAFVSRRQM
                     RRVLGDHRPATVGKAGFLGLVSSSCSYAATALAKSLFARGADFTSSMVFMFASTNLVV
                     ELGIVLWLLLGWQFALAEFVGGVIMIVLLALVLPVVITRRDVEDARIRLNVGQGKDRD
                     DLDRDDSAGEEQRRPLAERIRSRAGWSDAAGYTISDLTMLRKELVIGFLVAGFATVLV
                     PTWVWQSLFVTGHGFASSVENVALGPLLAILAFVCSIGNVPLAAAMWVGGISFGGVIS
                     FIFADLITLPLLFIYRRYYG"
BASE COUNT          421 a          800 c          795 g          525 t
ORIGIN      
        1 aggtgatggt tgacgttgcg gctaggaaat gtaggggttg tgcggtccac ggacgcccag
       61 gctcgggccc tgccccgcac tgatcctgcc gcagggtcgg cattaggctc cagggtcccg
      121 gtaggtggtg ttccgtaaag cagcacgagt tcgtgtgaag ttgttgtccg gttgccgcgc
      181 gatcgcattc aggagctacg ttcgctttgc tcatagatct gggctggtgg gccgacgatg
      241 agcgggtcgg gtgtgctcac cacatcggtg tccttggtcg ggtagtccag cgtggagagg
      301 acccagcgga gagcggcgat ccggccacgc cgcttgtcgt tgctcttcac cactgtccaa
      361 ggcgccgctg gggtatcggt gcactggaac atcgcctctt tcgcctgagt gtagtcgtcc
      421 catcggtcca gggccgccag atcgacagga ctgagcttcc actgccgcag cgggtcgatg
      481 acccggatgg tgaaccgggt ccgttgctcg gcgcgagaga ctgaaaacca taacttgatt
      541 agatggatgc cgctgtcgac caacgcctgc tctaatcccg gcgtttgttc catgaactcc
      601 cggtactcgg tcggcgtgca aaagtccatg actcgttcga cgacggcacg gttgtaccag
      661 gaccggtcga ataacacaat ttcccccgcg gccggaagct gactgaaata gcgttggaag
      721 taccactggg tgcgctcccg ctcgcttggt ttccccaacg ccactacccg cgccccgcgc
      781 ggattcaaat gctcggtgaa gcgtttgatg gtgccgccct tgcccgccgc gtcacggcct
      841 tcgaagagca caacgacccg ttgcccactg tccttgaccc aggactgcat cttcaacagt
      901 tcaatctgta ggaaccgttt ggtgcgctcg tactcctgcc ggctcatccg ctcggcgtac
      961 gggtagtcct gctgccacgt ggcgatctca cgcccatcag agttaactag gaacgcatcg
     1021 tcatcgtcga gttccctcac cgacaggccc tgcaggctgt ccaataggtc cacggatctc
     1081 agcgcctccc gcagcgcctc acgggtctcc tccgaatgac cggctcctcg ggggacgtgg
     1141 cggaagtcgt tgacaacttg ctcggctgaa gtcattgacc gatcccgtcg gtagcaattg
     1201 atcacctcac attgtccaac gctcatcggc tgtgacaagc acctccacga cacctagata
     1261 atcatcgatt atacccatag ggggtatggg ttacagtgaa ccgaggaggc tgagtgatga
     1321 acggctacat agcgaacaag ggcgcgctgt tggcgcggct ggcgcgcatc gaaggccagg
     1381 tccgtggcct gtcccggatg gtcgagaccg acaagtactg catcgacctg ctgacccagg
     1441 tctcggcaac cacccgggca ctgcaagcgg tcgccctgga gttgctggat gatcatctca
     1501 aacactgcgt gatcgaggcc gccacgcagg gcggcgaact ggccgaggac aaagtccgcg
     1561 aggccactgc cgcgatcacc cgcctggtca agtcatgacc ttccggtgcg ctgccgcctc
     1621 caactcagct gcgaaggcgc ggaggaaccg gcggtgagcg tagtcaacgc gatcggtcaa
     1681 agcctgtacg aggcgttttt gatgttctgg ggaaccctgt gggcgttggt gctggggttc
     1741 ggcctgtccg gtgcggtaca ggccttcgtc agccgaaggc agatgcggcg cgtcctgggg
     1801 gatcaccggc cggcgacggt gggcaaagcc gggttcctcg gcctggtgtc ctcctcctgt
     1861 tcctacgccg ccaccgcact ggccaagtca ctgttcgccc gcggcgcgga cttcacctcc
     1921 tcgatggtat tcatgttcgc ctccaccaac ctcgtcgtgg aactgggcat cgtgctgtgg
     1981 ctgctgttgg gttggcagtt cgcccttgcg gagttcgtcg gcggtgtcat catgatcgtt
     2041 ctactcgccc tggtgctacc tgtagtcatc acccgccgcg acgtcgagga cgcgcgtatc
     2101 cggctgaacg tcggccaggg caaagaccgt gatgacttag accgcgacga ttcggctggc
     2161 gaggagcagc ggcggccgct ggccgagcgg atccgcagtc gggccggctg gtcggacgcc
     2221 gctggctaca ccatcagcga tctgaccatg ctccgcaaag agttggtcat cggcttcctc
     2281 gtcgccggct tcgccaccgt gctggtcccg acctgggtgt ggcagtcgtt gtttgtcacc
     2341 ggccacggtt tcgcctccag cgtggagaac gtcgcgctag ggccgctgct ggcgatcctc
     2401 gcgttcgtct gctcgatcgg gaacgtcccc ttggccgccg cgatgtgggt cggcgggatc
     2461 tccttcggcg gggtgatctc cttcatcttc gccgatctga tcaccctacc gctgctgttc
     2521 atctaccgcc gctactacgg c
//
LOCUS       DASVXZ010000816         4486 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_590288, whole genome shotgun sequence.
ACCESSION   DASVXZ010000816 DASVXZ010000000
VERSION     DASVXZ010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4486
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590288"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..659
                     /locus_tag="VF788_17295"
     CDS             <1..659
                     /locus_tag="VF788_17295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX8935893.1"
                     /translation="FKDASLRDRYATKLAHLSGWTGDEAMVVRRVRETAGEAPRRRGG
                     RMQNTSSTQNGTDLPARDDVRLQAQREVLKAVLQEPAMTGPVYDTLPAEAFTHPCYAQ
                     LHAAVLAAGGTAAGMSGPEWVDAVAAHCDTRSLVTELAVETLRAKGSAEDDARYIGSL
                     LARLQATVVGQQVAEIKSRLQRISPLDDAEVYHQLFGDLVALEQYYRALREQAVGSQE
                     "
     gene            656..1198
                     /locus_tag="VF788_17300"
     CDS             656..1198
                     /locus_tag="VF788_17300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935894.1"
                     /translation="MSVWGRLLRSFGVVPELPPGFAGRLEPGERLVTTGELAGGGNLV
                     LTHLGMWVPEGAESRRIGWHLMSKAVWDRSALVVTEAVSTGMVGEAVLLSDLPPRRFA
                     LREPGKVPEVVRDRVTNSIRSSQYCQLPGGGAWFVQRRVPGRDGLVLQVRPEPGTAPA
                     ALEAMVREVVVRLPWPAAQS"
     gene            1230..1985
                     /locus_tag="VF788_17305"
     CDS             1230..1985
                     /locus_tag="VF788_17305"
                     /EC_number="2.1.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030798 - trans-aconitate
                     2-methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trans-aconitate 2-methyltransferase"
                     /protein_id="HEX8935895.1"
                     /translation="MWDPETYLAFGDHRARPFHDLVARINARDPILVVDLGCGPGTLT
                     RLLAKRWPMATVMALDNSPEMVQAARERGIHAECCDIRTWSPPPGTSLIVCNAVLQWV
                     PDHAELLRQWMRQLPPGGWMALQVPGNFNAPSHAETARLAAEPRWRDLLDLRETHPVL
                     EPPGYAAVLGPDAAELDVWETTYLHRLTGADPVLEWITGTALRPVRAALSAAEWTAFR
                     QELAPRLRAAYPAGADGVTWFPFRRIFAVAQAR"
     gene            2129..2201
                     /locus_tag="VF788_17310"
     tRNA            2129..2201
                     /locus_tag="VF788_17310"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2162..2164,aa:Asn,seq:gtt)
     gene            complement(2258..2569)
                     /locus_tag="VF788_17315"
     CDS             complement(2258..2569)
                     /locus_tag="VF788_17315"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX8935896.1"
                     /translation="MDGIRSRVHYTQGHAAGAAKHQSDVRCPRQAGRSQAHPFSDLRH
                     SCATLLFAQGVDLQTIQDLLGHSSIGVTSAIYVDVLREIQRDAIDRLGHPFGPDDETD
                     T"
     gene            complement(3705..4007)
                     /locus_tag="VF788_17320"
     CDS             complement(3705..4007)
                     /locus_tag="VF788_17320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935897.1"
                     /translation="MLKFAQLRSKAEIFAEITRNYPWVGDMRGGWEIEKFDFKPPSDS
                     WMDAFKPLATFKLELKSMPEFDKFDVWISGTTPKGDTKRVTVGTIAKQVEIGRCLS"
     gene            complement(4275..>4486)
                     /locus_tag="VF788_17325"
     CDS             complement(4275..>4486)
                     /locus_tag="VF788_17325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935898.1"
                     /translation="SPSKPSTRGQTKITDPTPEVSVLRGEAQFASVRLFSAAAESPNL
                     HAGLVWRVDLAQPDHPSSLGQPDAP"
BASE COUNT          761 a         1406 c         1473 g          846 t
ORIGIN      
        1 aattcaagga cgcatcactg cgggatcggt acgcgacgaa actggcgcac ttgagcggtt
       61 ggacgggcga cgaggcgatg gtggtccgcc gggtccggga aaccgctggt gaagcacctc
      121 gacggcgcgg agggcgtatg caaaacacgt cgtcgacgca gaacggcacg gacctccccg
      181 cgcgcgacga tgtgcggctg caggctcagc gtgaggtgct caaggcggtg ctgcaagagc
      241 ccgcaatgac cggtccggtg tacgacacgc tgccagctga ggcgttcacg cacccgtgct
      301 acgcgcagct gcacgccgcg gtgttggccg ctggcggtac cgccgcggga atgtccggcc
      361 cggagtgggt cgacgctgtc gcggcccact gcgatacgcg atcattggtc accgagctcg
      421 ccgtcgagac gctgcgagcc aagggcagcg ccgaggacga cgcgcgctac atcggcagct
      481 tgctggctcg cctacaagcc accgtcgtcg ggcagcaggt cgccgagatc aaatcgcggc
      541 tgcagcggat ctcaccactg gacgatgcgg aggtctacca ccagctcttc ggtgacctgg
      601 tagcccttga gcagtattac cgggcacttc gcgagcaggc cgtagggtcc caggagtgag
      661 tgtttggggc cggttgttgc ggagctttgg ggtggtgccc gagctacccc cgggattcgc
      721 cggtcgcctg gaacctggcg aacgcctggt caccactgga gagctggctg gtggggggaa
      781 cctggtgctg acgcacctgg ggatgtgggt gccggagggc gccgagtctc gccgtatcgg
      841 ctggcatctg atgagcaagg cggtgtggga ccgcagcgcg ctggtggtca ccgaagccgt
      901 cagcaccggc atggtggggg aggccgtgct gctgtccgac ctgccgccgc gccgcttcgc
      961 cctgcgtgaa cccggcaagg tccctgaggt ggtgcgcgac cgagtcacca actccattcg
     1021 atccagccag tactgccagc ttcccggtgg gggagcgtgg ttcgtgcagc gccgcgtgcc
     1081 cggccgagac ggtctggtcc tgcaggtgcg ccccgaaccc ggtaccgcgc ccgctgcgct
     1141 ggaagcaatg gtccgcgaag ttgtggtgcg cctgccgtgg ccggccgcgc agagttagtt
     1201 agggttgctg aggaagggca cgacgagaag tgtgggatcc ggagacttac ctcgcgttcg
     1261 gcgaccaccg ggcccgaccc ttccacgacc tggtggccag gataaatgcc cgcgacccga
     1321 ttctggtggt ggacctgggc tgtgggccgg gaaccctcac gcgcttgttg gctaagcggt
     1381 ggccaatggc caccgtgatg gcgttggaca actcaccgga gatggtgcag gctgcgcgag
     1441 agcgcggtat ccacgccgag tgctgtgata tccgcacctg gtcacctcca cccggcacca
     1501 gtctcatcgt ctgcaacgct gtgttgcagt gggtgcccga tcacgcggag ctgctacgcc
     1561 agtggatgcg gcagttgccc cccggagggt ggatggcctt acaggtgccg ggaaacttca
     1621 acgcgccatc ccacgccgag acagctcggc ttgccgccga accccgctgg cgggacttgc
     1681 tcgacctcag ggagacgcac ccggtgctgg aaccgcccgg atatgcggcg gtgctgggcc
     1741 ctgacgctgc ggagttggat gtgtgggaaa ccacctacct gcatcggctc accggtgccg
     1801 acccggtgct cgaatggatc actgggactg ccctgcgccc ggtgcgggcg gcactgtcgg
     1861 cggcggagtg gacggcgttc cggcaagagc tcgccccgcg gctgcgggct gcctacccag
     1921 cgggagccga tggggtgacc tggttcccct tccgccggat cttcgcagtc gcgcaggccc
     1981 ggtgacgcca gccccatagg gacacttcgc atgcttgccg ccggtgtcga ggatcgtctg
     2041 ccgcgggtgg ggcaccggca ccggtgtggc gcaccgtgcg ctatggtggt ccgcggtcgg
     2101 cccgcccagc cggtgggacc cgacgccttc cccgatagct caattggcag agcatgcgac
     2161 tgttaatcgc agggttgttg gttcaagtcc aactcgggga gcagccacaa cacggagatt
     2221 gatccccgta agaaccggct ctgaccgcac ttgtgggtta ggtgtcggtc tcatcgtccg
     2281 gtccgaacgg atgcccgagg cggtcgatcg catcgcgctg gatctccctg agtacgtcga
     2341 cgtagatcgc gctcgtcacg ccgattgagc tgtgtccgag gagatcctgg attgtttgga
     2401 gatcgacgcc ctgggcgaac agcaacgtgg cacaggagtg tcggagatca gaaaacggat
     2461 gcgcttgact cctgcccgct tgacgagggc atcgaacgtc cgattgatgt tttgcggctc
     2521 cagcggcgtg cccttgcgtg tagtgaacac gagacctgat tccgtccacc gatcaccggc
     2581 tgttaaccgg tcggccgcat gttgggctcg gtgccgccgt agtgctccta cgcagggccg
     2641 ggggagtgcg actacccgcg tggagtcatc ggtctttgtc tcgtcgtgcc ggagttcgcc
     2701 tgccactcgt tgcagctgca tcgccatcgt gatggttcct tcgagcaggt ctacgttctc
     2761 ccagcgcagt ccgagtgcct cgccccgcgc atgccgagcg cgatggcgac cgcgaatagt
     2821 gcataaatcg gtgttcccgg attgtggcca ggaatgtcgt cgcctcagcc acgctccagg
     2881 tctggaatcg atgccgccgg ggccgggtgg gtttggcgaa gctcgcgacg ttgcgtgtca
     2941 gtacctcctc agccaccgcc acgccctagg cgcagcattg gcactgttgg cggatgcggt
     3001 tgagcattcc ccggacgtcc gcagtcttga gggcggtcaa tttggtctcg ccgagagggg
     3061 gaaccagata cagccttacc gcgacctcgc acccgacgta ggtcgccgtt tgcgggccgc
     3121 cgccgcaccg ggcaccaagc tcgttggtga tatcacgtat ctcccgacct ggcagggctt
     3181 cgcttacctg gccacggtca ttgactgctg cacgaaggaa tgcatcaggt acgcaatcac
     3241 cgatcacatg cgcgctgcgc tgctcgtcga cgcgctgcgc atggccgccc gtaattacgc
     3301 actcgagccc ggagctattc ttcataccga tcgcggctcg cagtatctca gccaggcctt
     3361 tgccgagacc accacccaac tcggcatccg tcattcggtt ggacgcgttg gttcgtgctt
     3421 cgataattca caggcggagt cgttcaatgc cacactcaaa gttgagcgtc cggtacaatc
     3481 gagttccgct ataataccaa acggctccac tcggcgctgg gctatcgaac cccacgcgat
     3541 gcgcacagcg actatctaaa tcaacgacaa gcagcctgac aagactaata gaacctatca
     3601 gaaacgcgag gcagcccact gcaccgagcc agacgccagt tggagaggga tgttgtcccc
     3661 gggccagcgc gtggtcgagc tccgccgacg gcatgccagg ccatctagct taagcaccgc
     3721 ccaatttcca cctgttttgc aatggttccc accgtaaccc tcttcgtatc acccttcggg
     3781 gtcgttccgg agatccaaac atcgaacttg tcgaactctg gcatactctt cagctccagc
     3841 ttaaaggttg ccagcggctt aaaagcgtcc atccagctgt cgctgggcgg tttgaagtcg
     3901 aacttttcaa tctcccaacc tccgcgcatg tcgccgaccc atgggtaatt gcgtgtgatc
     3961 tccgcaaaga tttcggcctt gcttcggagc tgagcgaatt tcagcatgcg ctttcctttc
     4021 ttatgaacgg gcagcggtgc aggccatgtc cgacatacgt gccggggtgg ataggggccg
     4081 gccttgctcg cagtctccgg cgactcagct cgcggagcct ggtgtcggct aacccggccc
     4141 ttggatcttc caggaagctg agcccggtgt gtacttgcag acgtacttgc agatgtactt
     4201 gcatgcacac tcataaggta aggctcagta gcgtccggcg cagctctatc gcctaatcgg
     4261 agcagtgtca atcactatgg cgcgtcaggc tgccccaggc tgctggggtg gtcgggctga
     4321 gccaggtcga cgcgccacac gagcccagcg tgcaggtttg gtgattccgc cgccgcactg
     4381 aagagcctga ccgaggcgaa ctgagcttcc ccccgtagca cggacacctc cggtgtgggg
     4441 tcagtgatct tggtctgacc tcgtgtggag ggtttcgaag gtgacg
//
LOCUS       DASVXZ010000817         2794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1038324, whole genome shotgun sequence.
ACCESSION   DASVXZ010000817 DASVXZ010000000
VERSION     DASVXZ010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038324"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VF788_17330"
     CDS             <1..437
                     /locus_tag="VF788_17330"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935899.1"
                     /translation="TIPFAAAYCASKHAVVAISETLHRELKEMGLSIGVTVACPALVR
                     TPMTEGMFTLAQTDDDVLTERLPPHLSSQQLRANLQRMIANPMEPDVAAERILAAVET
                     DRLYALTHGDFNDSVRQRAEGILAALHNQGWSDNHVETASNE"
     gene            1047..1490
                     /locus_tag="VF788_17335"
     CDS             1047..1490
                     /locus_tag="VF788_17335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935900.1"
                     /translation="MCLPSEVEQLLLEVVADGFVLYCCGPRAAPCALVAAYQWQDYVD
                     LVAIRRFDRIITARIPAPQHTQVDIFTPEIVVWAYEGPPQRALRALLDLLPPHHPRAP
                     TDPYPAPPSLHLSRAEQRPMTIQLPPPGRAGNRATRLTAARIRRG"
     gene            complement(1612..2373)
                     /locus_tag="VF788_17340"
     CDS             complement(1612..2373)
                     /locus_tag="VF788_17340"
                     /inference="COORDINATES: protein motif:HMM:NF012349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase family protein"
                     /protein_id="HEX8935901.1"
                     /translation="MSGETAMKYLLANWKMHTTVDQAVTLVQAIQEGLRERTSRGQQL
                     PSVIVCPPFVSLVPLRAVADERLVRLGAQNCHWEKEGPYTGEISPVMLTGLAQYVMIG
                     HSERRAACESDEQIARKVAAVAEVGLTPILFVGEDEPGAGARSQTEHRLKQGVSGIDP
                     SQQSLLVVYEPAWAIGADRAADARYVREIVTGLKDLLRQLGTSDPEVIYGGTVKKENI
                     EQFAELDVLDGVGATRASLTAQDFLAMIDRVTSSS"
     gene            complement(2411..>2794)
                     /locus_tag="VF788_17345"
     CDS             complement(2411..>2794)
                     /locus_tag="VF788_17345"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX8935902.1"
                     /translation="VTAEDAYALLLRFRGGGLGVVTLVATARHGRGDVIEIHGDEGTV
                     RLDGDRRVWWGRAGEELQSEGPLDASSAEAFKRVARNFWAAIRKGAAPEPSLEEGLRV
                     QAIFDAVRTADIERRWVQPKPVTLS"
BASE COUNT          491 a          967 c          840 g          496 t
ORIGIN      
        1 cgacgatacc gttcgcggcc gcttactgcg ccagcaagca cgcggtagtc gcgatctccg
       61 agacgttgca ccgcgagctg aaggagatgg ggctgtcgat cggggtgacc gtggcctgcc
      121 ccgccctggt acgcacgccg atgaccgaag gcatgttcac cttggctcag accgatgacg
      181 atgtcttgac cgagcgcctt ccaccgcacc tgtcgagcca acagctgcgg gcgaatctcc
      241 agcgcatgat cgccaacccc atggaaccgg acgtggccgc cgaacgcatc ctcgccgcgg
      301 tcgaaaccga tcggctgtat gccctgaccc acggcgactt caacgacagc gtccgtcaac
      361 gggccgaagg catcctggcg gcactacata accagggttg gtccgacaat catgtcgaga
      421 cagcgagcaa tgagtgagag gaagcgacag cgttacgctg attacagtgg tggcctgagg
      481 caggaccgaa cctccgacct tccgattcac gtcagtgcat tgctgcctac cgtcatccga
      541 aagttcggcg gattattctc atcccgatcg gtggcccact cggcccatca tcatcacggg
      601 atcatctatt tctctaccgg cggcacacag gtacattggt cgaatcgaca tagtggcgtg
      661 aatgtgacct ctctcgcctg ttcaaacgcc cgaatggcca gtatgtcacc aggcaggcaa
      721 aacgcgcgaa gcggacacaa tcaaggtagg cattcctaac tagttcttgc atcggtacgt
      781 acattcgtat aattaacact ttcgtgcatt aacgcttgca tcgacgtgca atggctgaaa
      841 tggtgacctg atcagctggt ccgatgaacc acccagtgca gggaagttgc atcgtggggt
      901 cgctacacac tcgggagaga agggccaccc gcgctcagga gcgccattcc cacgcggctg
      961 agaatgctgg ccgtgacgcg ggcgtatcac aggctggtcg gtctaggagg gcatctgcgt
     1021 catcagtgct gcgcttgggc aacgacgtgt gcttaccgtc agaggtggag cagctgctgc
     1081 ttgaggtggt cgccgatggg ttcgtcctgt attgctgcgg acctcgggcc gcgccgtgtg
     1141 ctctggtcgc ggcttaccaa tggcaggatt acgtcgacct cgtcgctatc cggcgcttcg
     1201 accgaatcat caccgccagg attcccgccc cacagcacac tcaggttgac atcttcaccc
     1261 cggagatcgt ggtgtgggcg tatgagggcc cgccacagcg ggcactacgg gcactactcg
     1321 acttgctccc tcctcaccat ccccgcgccc ccaccgaccc gtacccggcg cctccctcgc
     1381 tgcacctctc tcgcgctgag caacgtccca tgaccatcca gcttccccca ccgggacgcg
     1441 ccggaaatcg tgctacccgc ctcaccgccg cgaggatccg acgaggatag gggctgacct
     1501 aggcaccggg cacagcagcc acggtgaccc gtcaccagcg ctgatcgcct gccatccgca
     1561 gaagggacag ccgccgacgg tggtgctcac gagctggcgc caccttcggg atcagctgga
     1621 gctggtcact cggtcgatca tcgccaagaa atcttgggcg gtcaggctgg cgcgcgtggc
     1681 gcccacgccg tcgagcacgt cgagttcggc aaactgctcg atgttctcct tcttcaccgt
     1741 tccgccgtag atgacctccg ggtcgctcgt cccgagctgg cgcaacaagt ccttgaggcc
     1801 tgtgacaatc tcccggacgt accgggcgtc ggccgcacgg tcggcgccga tggcccaggc
     1861 cggctcgtac acgacgagca gggactgctg gctggggtcg atgccggaga ctccctgctt
     1921 caaccggtgc tcggtctgcg agcgggcacc ggctccgggc tcgtcttccc cgacgaaaag
     1981 gatgggtgtc aggcccacct cagcgaccgc cgccaccttc ctggcgatct gctcgtcgga
     2041 ctcgcaggcg gctcgccgtt cgctgtgccc gatcatcacg tactgtgcca ggccggtgag
     2101 cattaccggt gagatctcgc cggtgtaggg gccctccttc tcccagtggc agttctgcgc
     2161 gcccaggcgc accaatcgct cgtcggctac ggcccgcaag ggcaccaacg acacaaacgg
     2221 cgggcagacg ataacgctgg gcagctgctg ccctcgagag gtccgctcgc gcaaaccctc
     2281 ctgtatcgcc tggacgagag tcaccgcctg gtcgacggtg gtgtgcatct tccagttggc
     2341 gagcaggtac ttcatggccg tctccccgct catgttcagg ggaccgcggc tcgcccgtgt
     2401 ccacacgccg tcaggacaag gtgacgggct tgggctgtac ccagcggcgc tcgatgtcgg
     2461 ccgtgcgaac ggcgtcgaag atcgcctgca cgcgcagtcc ctcctccagc gatggctcgg
     2521 gcgcagcccc cttccggatc gccgcccaga aattgcgggc cacccgcttg aacgcctcgg
     2581 ccgagcttgc gtcgagcggc ccctcgctct ggagctcctc accggcgcgc ccccaccaga
     2641 cccgccgatc gccgtcgagc cgcaccgttc cctcatcgcc gtggatctcg atgacgtcgc
     2701 cgcgcccgtg tcgtgcggtg gccacgaggg tcaccacccc cagccccccg ccacggaacc
     2761 gcagcagcag cgcgtaagcg tcctcggccg tcac
//
LOCUS       DASVXZ010000818         3968 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1038770, whole genome shotgun sequence.
ACCESSION   DASVXZ010000818 DASVXZ010000000
VERSION     DASVXZ010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038770"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VF788_17350"
     CDS             complement(<1..239)
                     /locus_tag="VF788_17350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935903.1"
                     /translation="MKAHCPGAVTEPEVDDLVRRVRSEPWRRDALIPLLREDHPLHEG
                     RGTGTTARVRSFVLAAFADVGLPDAALPYVAEELE"
     gene            complement(236..1177)
                     /locus_tag="VF788_17355"
     CDS             complement(236..1177)
                     /locus_tag="VF788_17355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935904.1"
                     /translation="MSVEDYRANYNRAQGEAATRAADPTDPLAGGLAGDGDAVRGSRT
                     DQEVIASFADTGADTSARVAAIDKARLDALSRPGVMRALITVLADQTDDARVRSAAQG
                     ALDELSFAVADFAPYEADYRGALRIAATDPDSQLAERALEVLALHRDEYAQRLLVQGL
                     EDPSTAVVSRLRALQFLGYDLHAGHYPVLRRIVEEAGDPHERIAALRLLAADSGSAAV
                     LERIVADRSEDVQARTVSAVALNAQNPDAFASKAREIVLDPEEDDDLRAISLTALTVV
                     PEVTDGPDLAEAVMSTPIPPSPELERAAQQYREAKSR"
     gene            complement(1204..2496)
                     /locus_tag="VF788_17360"
     CDS             complement(1204..2496)
                     /locus_tag="VF788_17360"
                     /inference="COORDINATES: protein motif:HMM:NF012486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosinase family protein"
                     /protein_id="HEX8935905.1"
                     /translation="MAFSLELSINGTVRPVGRYLSWSPAPASLRVADSDGAVGPFRVT
                     LRNSAAAGGGKLVFRVERKDPPADELDLELPDDGTGREFFVAGRFGSPSTVDGDAPLE
                     VQQQGAGGALLASIPLMVRIRKDAERLTAAERSRFLLALALLNDQGRGLYQSYRDAHQ
                     EISLDEAHGRDGFLPWHRAYLLDLERELQHLDPSVALPYWRFDQPAPGLFTADFLGAA
                     DPASGLAQFAPSNPLSLWSVDGLPGISRIPLFDPVTSPAHDLNGQQVRPDAVITGFRG
                     AYTQLRRPFETNPHGTAHVSFSGPIRFPETAPRDPLFFLLHCNVDRLWAAWQWLQQRF
                     DSSSSATYGFRGHFGDPGSIRIGHNLLDTMWPWNGVTGGPGPRPPTAPRTPFPGTLAP
                     APGNAPTVGSMIDFQGIHDAVSELGFDYDDVPYQPDVP"
     gene            3055..3387
                     /locus_tag="VF788_17365"
     CDS             3055..3387
                     /locus_tag="VF788_17365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935906.1"
                     /translation="MDHAGADEVERRAITQRFLDDGTNSAVQEVICLSAVIWSIILGL
                     LGNALGFIGVLALDQPLGPVLVLVAGVIILLTSLVPGGTLDALTPSRPGDRPARVPRF
                     PAQCLRQH"
     gene            3442..3690
                     /locus_tag="VF788_17370"
     CDS             3442..3690
                     /locus_tag="VF788_17370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935907.1"
                     /translation="MASTSARVIAHAPDYDPKPSDLAKVGTADYVLYAPFDSFAPRLK
                     EAAGGHAKTVELNLENTPKTIDSEVTRLGQMFHPAPNQ"
     gene            3735..>3968
                     /locus_tag="VF788_17375"
     CDS             3735..>3968
                     /locus_tag="VF788_17375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935908.1"
                     /translation="MLDNAHQSANPDIAGAHTVELINFPGADLNLLSMFEENTAWRAY
                     AVAARPPPLNARNRPVPNTSVTTAVVTCRKLSAV"
BASE COUNT          672 a         1334 c         1292 g          670 t
ORIGIN      
        1 ctctcgagct cctcggcaac gtagggcagc gccgcgtcgg gcagcccaac gtcggcgaac
       61 gcagcgagca caaagctccg cactcgcgcg gtggtacccg tccccctccc ctcgtgtagg
      121 ggatggtcct cgcgtagaag cggaatgagg gcgtcgcgtc gccacggttc cgaccggacg
      181 cggcggacga ggtcgtcaac ctccggttcg gtgaccgcgc ctgggcagtg cgccttcacc
      241 gggacttcgc ctcgcggtac tgctgcgccg cccgctccag ctccggggac ggtgggatcg
      301 gcgtggacat caccgcctcg gcgagatccg gcccgtctgt gacctcgggc acgacggtca
      361 gcgcggtgag ggagatcgcg cgcaggtcgt cgtcctcctc cggatcgagg acgatctcgc
      421 gtgccttgga cgcgaacgcg tcaggattct gagcgttgag tgcgaccgcg cttacggtgc
      481 gggcctgcac gtcctccgac cgatctgcca cgatccgttc gagcacggcg gccgagccgc
      541 tgtcggcggc gagcagccgc agcgcagcga tgcgttcgtg gggatcaccg gcttcctcga
      601 cgatccgacg cagcactggg tagtgcccgg cgtgcaggtc gtaaccgagg aactgcaacg
      661 cgcgcaaccg gctgacgacc gccgtggacg ggtcctccag cccctggacc agcaatcgct
      721 gtgcgtactc gtcccggtgg agcgcgagca cctcgagtgc tctctcagcc aactgcgagt
      781 ccggatccgt cgcggcgatc cgcaacgcgc cgcgatagtc agcctcgtac ggcgcgaagt
      841 cggccacagc gaagctgagc tcgtccaggg cgccctgcgc cgcactgcgc accctggcgt
      901 cgtcggtctg gtccgcgagc accgtgatca aggcccgcat caccccgggc cgcgagagcg
      961 catcgagccg cgctttgtcg atcgccgcga cccttgcgga ggtgtcggct ccggtgtcgg
     1021 cgaagctagc aatcacctcc tggtcggtcc gactgccgcg cacggcgtcg ccgtcaccgg
     1081 ctaggccgcc ggcgagtgga tcggtgggat cggcggcccg cgtcgccgcc tcgccctgcg
     1141 ctcggttgta gttcgcccgg tagtcctcga ccgacatggc cggctccttt tcgttcccgg
     1201 tgctcacggt acgtctggct ggtagggaac gtcgtcgtag tcgaatccga gctcagagac
     1261 agcgtcgtgg ataccctgga aatcgatcat cgatccgacg gtgggggcat tgccgggggc
     1321 cggcgccagc gtcccgggaa atggcgtgcg cggggcggtc ggcggccggg ggcccggccc
     1381 gccggtcacc ccgttccatg gccacatcgt gtcgagcagg ttgtgcccga tacggatgct
     1441 gccgggatca ccgaagtgac cacggaagcc ataagtggcg ctgctgctgg agtcgaaccg
     1501 ctgctggagc cactgccaag cggcccacaa ccggtccacg ttgcagtgca gcaagaagaa
     1561 cagcggatcc cgcggcgcgg tttccggaaa ccggatgggg ccagagaagc tgacgtgagc
     1621 agtgccgtgc gggttggtct cgaagggccg ccgcagctgc gtgtaggcgc cgcggaagcc
     1681 ggtgatgacc gcgtcgggac ggacctgttg accgttcaag tcgtgggcag gtgaggttac
     1741 cgggtcgaag agcgggatgc ggctgatccc gggcaagccg tcgaccgacc ataagctcag
     1801 cggattagat ggcgcgaact gcgccaagcc tgacgcgggg tcggccgcgc cgaggaagtc
     1861 ggcggtgaac aacccagggg ccggctggtc aaaccgccag tagggcagag cgacactcgg
     1921 gtcgaggtgc tggagctcac gctccaggtc cagcaggtac gcccggtgcc acggcagaaa
     1981 cccgtcccgg ccgtgggcct cgtcgaggct gatctcctgg tgggcgtccc gatagctctg
     2041 atacaggccg cggccctggt cgttgaggag ggccagcgcg aggaggaacc ggctccgttc
     2101 cgcggcggtg agccgctcgg catccttgcg gatgcggacc atcaggggaa tcgatgccag
     2161 cagcgcccca ccggcgccct gttgttggac ctccaacggc gcgtcaccgt caacagtgct
     2221 cggcgaaccg aaccgacctg cgacgaaaaa ctcccgcccc gtcccgtcat ccggcagctc
     2281 caggtccagc tcgtcggccg ggggatcctt gcgctccacg cggaacacca gcttcccgcc
     2341 acctgccgca gcgctgttgc gcaatgtgac ccggaacggc ccgaccgcgc cgtcggagtc
     2401 cgccacgcgc aggctggccg gtgccggaga ccaggacagg tatcggccga cgggccggac
     2461 cgtgccgtta atggaaagtt cgagtgaaaa agccacaact gtgctcccta gcgagcgtcc
     2521 tcgggtgacc ttacccacgg gtgggtcatt tattgcgtga accgtgagag cttacggcag
     2581 cgatgcagag aggagattga taaacgcctg caaggctcgt tcgttcaatg ccgggtgttg
     2641 cttgctctca ctgatcgttc aattcgacaa gaaagattca attgcggagg tgtcgagtgg
     2701 ccttctgggt ctgacggtcc agctatggca tgtcctcgtc gacagagccg accttaccta
     2761 tgccaatagg tgaccgtttc gatgaaatca atcaagtaaa gccggtctac gccctagctt
     2821 gccacatgaa tggcatcggt gtcgtcattt gccggtatcc tttcatggcc tgcatccgtt
     2881 acaggcagcc gatcaccacg atggctgtct tatgcccgtg ccgcgccgct gttcaccgtc
     2941 acactcgagg agggcgagca ctgccagcca gatacgtcgt gcccacagcc aatcgagtga
     3001 acttgtgcgg cgcgttgtgg ccttcgagcg cgtgtctcat ctcggaattt cgcggtggat
     3061 cacgccggcg cagacgaggt tgagcgtcgg gcgatcacac agcgattcct cgatgacggc
     3121 accaacagtg cggttcagga agtcatatgc ctttccgcag tgatctggtc gatcatcctc
     3181 gggctactcg gaaacgccct cggtttcatc ggtgtgctgg cgctggacca gcctcttggt
     3241 cccgtcctgg tcctggtggc cggagtgatc atccttctca cctccctcgt ccccggaggg
     3301 accctcgatg cgctcacccc gtctcgccct ggcgaccgtc ctgctcgcgt tcctcgtttt
     3361 cctgctcagt gcttgcggca gcactgagca gcccacgcag ggcagcggcc gagcaacggc
     3421 ccgaccgggg gccctgtggt ggtggcctcc accagcgccc gcgttatcgc ccacgcgccc
     3481 gactacgacc cgaagcccag cgatctggcc aaggtcggca ctgccgacta cgtgctctac
     3541 gcgccgttcg actccttcgc tccgcggctg aaggaagctg ctggcgggca tgccaagact
     3601 gtggagctga acctggagaa cactcccaaa accatcgata gcgaggtgac caggctcggg
     3661 cagatgtttc atccggcccc gaaccagtaa ccgccgggca actgacccaa ctcaccgcgc
     3721 tgcacccgac gctggtgctc gacaatgccc accagtccgc caaccccgac atcgccggcg
     3781 cccacaccgt cgaactgatc aactttcctg gcgcggacct caacctgctc agcatgttcg
     3841 aagagaacac cgcatggcgc gcttacgcgg tagcagctcg accgccaccc ctcaacgccc
     3901 gcaacaggcc tgtgccgaac accagtgtga ccacagcagt cgtgacatgc agaaagttgt
     3961 ccgcagta
//
LOCUS       DASVXZ010000819         3226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_949744, whole genome shotgun sequence.
ACCESSION   DASVXZ010000819 DASVXZ010000000
VERSION     DASVXZ010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_949744"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..443
                     /gene="crgA"
                     /locus_tag="VF788_17380"
     CDS             177..443
                     /gene="crgA"
                     /locus_tag="VF788_17380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020663549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CrgA"
                     /protein_id="HEX8935909.1"
                     /translation="MPKSKVRKKSVYTPPAEALGPTKVRVAGPSHPFYVAVMLGSMLL
                     GLLWLVVNYLAVDKIPLLSSLGNWNFLIGFALMVIGLLMTMRWR"
     gene            complement(747..1247)
                     /locus_tag="VF788_17385"
     CDS             complement(747..1247)
                     /locus_tag="VF788_17385"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX8935910.1"
                     /translation="MAQAASLAHNTESPLFKQWALQPRAVADGAWWQLLTAGFLHIGP
                     IHLAFNMIALWVIGRDLEQFLGSFRFLVVYLVSLLGGSLVVLLFENAVSSTAGASGAV
                     FGLMGGFAVVLMKMRLSPRPALTIILLNVVISFVVPNISILGHLGGLVFGAATTAAML
                     YAPRRH"
     gene            complement(1499..2035)
                     /locus_tag="VF788_17390"
     CDS             complement(1499..2035)
                     /locus_tag="VF788_17390"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007027643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX8935911.1"
                     /translation="MSEQTNETQVILHTSEGDIRLTLFPTHAPKTVANFVGLAEGSKE
                     YTQRNARDELSGPFYDGSLFHRVIDGFMIQGGDPTGTGTGGPGYRFGDETHPELQFNR
                     PYLLAMANAGPNTNGSQFFITVRPTTHLNRKHTIFGEVADQDSRNVVDTIAGTPTRGD
                     RPVKDIVIERVTVAPAGV"
     gene            complement(2106..2654)
                     /locus_tag="VF788_17395"
     CDS             complement(2106..2654)
                     /locus_tag="VF788_17395"
                     /inference="COORDINATES: protein motif:HMM:NF021000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2020 domain-containing protein"
                     /protein_id="HEX8935912.1"
                     /translation="MSSAAGPLVAAVVGCSHPTIATNALEPSHTMAPTGTPPTVEGSL
                     VPPAPRPVAEGPCRYLSTGSVQAANGERVASVRVSRTGTDQPYPACFFLTANGTVQLR
                     TWIVVATPKTAGAVVDSAAPPGTSDLAELPGGWSGGSQPTAEGAVFAVARQGTAVVIT
                     TNQRQTISARQIAQQVITTLRL"
     gene            complement(3043..>3226)
                     /locus_tag="VF788_17400"
     CDS             complement(3043..>3226)
                     /locus_tag="VF788_17400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935913.1"
                     /translation="AAPGSKTIAAAVPAAMRARRRCLLGVRDVMFRCSSSFEISPREG
                     GTAFPLGLPWIPRTWQ"
BASE COUNT          567 a         1044 c         1050 g          565 t
ORIGIN      
        1 tcatctcgta atgtccgggc ccgcatagaa gagtgatggc ggaccgggac ccggatcgcc
       61 gccacagccg acgtgcaggt caacggccgc actacgttaa cgtgtgctgc agcgtccctc
      121 tggcgagcgc ttaacccgca cgtcgaacga gcctgcatgt cagacgagga atcaccatgc
      181 cgaagtcgaa ggtccgcaag aagtcggtct acaccccgcc ggccgaggcg ctcggtccga
      241 cgaaggtccg cgtcgccgga ccctcccacc ctttctacgt cgctgtcatg ctcgggtcga
      301 tgctgctcgg cttgctgtgg ctggtggtca attacctggc cgtcgacaag attcccctgc
      361 tcagcagtct cggcaactgg aatttcctga tcggcttcgc cttgatggtc atcgggctac
      421 tgatgaccat gcgctggcgc tgagcctctt ctccagccac cgctgggaac cgtaggagga
      481 gttcggttgc gcgccgtcca catacgcgcc gtccacatag ctgtggtcaa acaacaccgt
      541 tgccattcat ccccactgtg gacaatctct ggggacaacc ccatggggaa agtcgtctgc
      601 cctccccgga ctgcacgctg atccttggaa cgcgacacac cggacgagga gcgcgacaca
      661 cggggcgttg gcggtcgaca tgccgggcac ggtagcccga cacgccgagc acggaggagc
      721 gacacgccgg ggtgaggcgt tcggaattag tgacgccgcg gcgcgtaaag catcgcggcg
      781 gtggttgctg cgccgaacac caggccaccg aggtggccga gtatggagat attcggtacc
      841 acgaagctga tgaccacgtt cagcaagatg atcgtcagcg ctgggcgcgg gctgagtcgc
      901 atcttcatca ggaccacggc gaagccgccc atcaggccga acaccgcgcc ggatgcacca
      961 gctgtgctgc tcaccgcgtt ttcgaagagt agaaccacga gcgagccgcc gagcagcgaa
     1021 accagataca ccaccaggaa gcggaagctc cccagaaact gctcgagatc tcggccgatc
     1081 acccatagag cgatcatgtt gaaggcgagg tggatcggcc cgatgtgcag aaagcctgcc
     1141 gtgagcagct gccaccaggc accgtcggcc accgccctgg gttgcaaagc ccattgcttg
     1201 aacagcggtg attccgtgtt gtgtgccagg ctggcggcct gcgccacggt gatcgcgaag
     1261 atcacgacgt tgattgcgat cagtccaggg accaccaacg ggcgctgggc cggccccgac
     1321 cacagcacgg cttcgccgcg cggatgcgag cgagcagccc cagcgacaca gtccacacac
     1381 tggtagccga ccgaggcctc gcgcaggcag tcggggcagg ccgggcgatc acagcgggag
     1441 cagcgaaccc cggtctctcg gcctgggtgc cggacacata ccggagctgc catcgcagtc
     1501 ataccccggc cggcgcgacc gtcactcgct cgatcacgat gtccttcacc ggacggtccc
     1561 cacgtgtcgg ggtgcctgcg atggtgtcga ccacgttacg agagtcctgg tcggccacct
     1621 caccgaagat ggtgtgcttg cggttcagat gtgttgtggg gcggacggtg atgaagaact
     1681 gcgagccgtt ggtgttcggg ccggcgttgg ccatggccag caggtacggc cggttgaatt
     1741 gcagttccgg gtgagtctcg tcaccgaagc ggtaacccgg gccgcccgtg ccggtaccgg
     1801 tcgggtcccc accctggatc atgaaaccgt cgatcacacg atgaaacagc gagccgtcat
     1861 agaacggccc agacagctcg tccctggcgt tgcgctgggt gtactccttg ctgccttcag
     1921 cgaggcccac gaagttcgcc acggtcttcg gggcgtgggt cgggaagagc gtcaggcgga
     1981 tgtcgccctc gctggtatgc aggatgacct gcgtctcgtt cgtctgttcg ctcaccaggc
     2041 ccatcctgcc atcacctgag ctcggcgatg gacggccctg acgtcgagca tccgcacagc
     2101 ccccgctaca gccgcaatgt ggtgatcacc tgctgggcga tctgccgagc actgatcgtc
     2161 tgccgttggt tggtcgtgat cacgaccgcg gtgccctgcc gggccaccgc gaataccgct
     2221 ccctcggcgg tcggctgtga gccgcctgac cacccgccag gcagctcggc caggtccgag
     2281 gtgcccggcg gagccgccga atcgacgaca gctccggccg tcttcggcgt ggccaccacg
     2341 atccacgtcc gcagctgcac cgtgccgttc gcggtgagga agaagcaggc tgggtagggc
     2401 tggtcggtgc ctgtcctgga aactcggacg ctcgcgaccc gctcgccgtt ggctgcctgg
     2461 actgaccctg ttgagaggta gcggcatggt ccctcagcga ccggccgtgg tgctggcggc
     2521 accagcgatc cctccactgt gggaggtgtc ccggttggag ccatggtgtg cgacggctcg
     2581 agcgcgttcg tcgcgatggt cggatggcta cagccaacga ctgcggcaac caggggccca
     2641 gctgcgctgc tcatggtgat cagcttccag cgggtgctgg gggtaatcgg cctgcggcgg
     2701 cccgcgggtg acatgtcggc aggcagtcaa ccatgaccgc gacggtgcgc acagctcggg
     2761 ttgtgaatga ccgcttctgg ggccgtcatt tctggctcga gattccgctt tggcaactca
     2821 gtgtaacgat cagttaccct ttgatacccc ctcagcgtgg ttcgacccga ttctgccggg
     2881 tctctatcga ctattcgtaa cccttgaacg gtgtcaatgg gggcaaggcc caccgttcgg
     2941 ggagtagtcg ggttaccggt cgtatctgtg ccgactccca cctcgttgag ccggtacctg
     3001 gatgcctgga gatcacccat cccccgggtg agtccggagc gtctattgcc aggtacgagg
     3061 gatccacggc aacccgaggg ggaaggccgt accgccctct cgcggagaga tctcgaacga
     3121 ggaggaacac cggaacatga cgtcacgcac acccaggagg catcgccgcc tggctctcat
     3181 ggccgccggg acggcagccg cgatggtttt gctgccgggt gctgcc
//
LOCUS       DASVXZ010000820         4292 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1483235, whole genome shotgun sequence.
ACCESSION   DASVXZ010000820 DASVXZ010000000
VERSION     DASVXZ010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4292
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1483235"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1448)
                     /gene="gatA"
                     /locus_tag="VF788_17405"
     CDS             complement(<1..1448)
                     /gene="gatA"
                     /locus_tag="VF788_17405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEX8935914.1"
                     /translation="MISPTSLTRLPAAELAGRIHTRELSAVEVTRAHLDRIAVVDPAL
                     HAFLHLDSEGALVAAAAVDDSLRRGDPPASPLAGVPLALKDVFTTVDMPTTCGSRILE
                     GWRPPYDATVTRRLRAAGVVILGKTNMDEFAMGSSTENSAYGPTRNPWALDRVPGGSG
                     GGSAAAVAAFEAPLAIGTDTGGSIRQPSAVTGTVGVKPTYGGVSRYGLVAFSSSLDQG
                     GPVARTVLDAALLHELIGGHDPLDSTSIDAPVPPVVQAARAGATGDLAGVRVGVVSQF
                     RGEGYQPGVLRAFEIAVSRLRELGAAIVEVSCPAFDHALPAYYIIAPSECSSNLARFD
                     GMRYGLRLGDDGTRSAEEVMSLTREAGFGPEVKRRIMLGTYALSAGYYDAYYGQAQKV
                     RTLIIRDFAAAFDRVDVLISPTTPTTAFRLGERVADPLAMYLSDLCTIPANLAGNAAL
                     SVPAGLSDDDGLPVGLQVMAPTLADDRAYRVAA"
     gene            complement(1445..1741)
                     /gene="gatC"
                     /locus_tag="VF788_17410"
     CDS             complement(1445..1741)
                     /gene="gatC"
                     /locus_tag="VF788_17410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEX8935915.1"
                     /translation="MPTISRDEVAHLARLARLAVTEEELDLFAGQLEVILTSVARVSE
                     VAADNIPPTSHAVGLTDVFREDVPRAGLTQQQALSGAYATEDGRFRVPRILDES"
     gene            1956..2609
                     /locus_tag="VF788_17415"
     CDS             1956..2609
                     /locus_tag="VF788_17415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEX8935916.1"
                     /translation="MSFLIRVQLPDRPGALGAVATALGKVGVDILSLDVVERRSGVAI
                     DDLVVELPSGRLPDVLITAAESVEGVEVDAVRPWAGVLDTHRELELVEDVAADPAHGL
                     QTFTDGVPKIIRAGWAIVLTTSQGKPQRVTASFAAPETVVADLPWWPLRRATVLDGED
                     SWVPPPWRELGTELAATPLGSSERVLLIGRPGGPMFRAAEVARLEHLAGIVAVVLRS"
     gene            complement(2687..>4292)
                     /locus_tag="VF788_17420"
     CDS             complement(2687..>4292)
                     /locus_tag="VF788_17420"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8935917.1"
                     /translation="PKTPPGPTVVVAHGAPFSAYNNTSAQAKLNPNNDLVLNQVLAEP
                     FIVDGNGRLLLNSDVLVSAELTSKDPQVVTYKIKPTVRWSDGQPWNCRDFYLAWLARS
                     GSTPYFTPATTRGLDRTTAECRNENTFVETYRSPYADWRRNYLQHAILPAHVLERETG
                     IADITALGPASPPDELKKVADFWNNKWAGFDAKMMPASGPYQFDGSTSNEQTVLIRNN
                     AWPGNPGGPATIILTSVADNAVAVQGLASGQFGVLQLPADPLLADRLRELSGRGVTFE
                     TRGGAALEHLDLNLTSPLFKDPVIRTAFAQCIDRNKLVDDELVRGVRPDTQPLGSLTF
                     FPGEAAYVDLYSDKMIADSQKAQVTLERAGWILGSDGVYSRAGQRLAFTITHDGSPAH
                     SREVELIRTQCRQAGMEIADGATPVGVDDVLARGRFDVALVTSARTSPAWSLADRYAS
                     KGKLNYQHYANPALDSVLDVAETQYTESVQTDALTKADRLLADDLVSLPLFQVPIIWA
                     YRTNIENVYRPAVDGVTWNANEWTVN"
BASE COUNT          745 a         1369 c         1429 g          749 t
ORIGIN      
        1 gccgccaccc ggtaggcccg atcgtcagcc aaggtgggcg ccatcacctg cagaccgact
       61 ggcaggccat cgtcgtcaga tagcccggcc ggcaccgata acgcggcgtt accggccaag
      121 ttggccggta tcgtgcacag gtccgacagg tacatcgcca acggatcggc cacccgctcc
      181 ccgagacgga acgcggtggt cggggtggtc ggggagatga gcacgtccac ccgatcgaag
      241 gccgcagcga aatcccggat gatcaacgtc cggaccttct gcgcctggcc atagtaagcg
      301 tcgtagtacc cagcggacag cgcgtaggtg ccgagcatga tccgacgctt gacctcaggc
      361 ccgaagcccg cctcacgggt cagtgacatg acctcctcgg cgctgcgagt accgtcgtct
      421 cccagccgca gcccgtaacg catgccgtcg aagcgggcca ggttggagga acactcgctc
      481 ggcgcgatga tgtagtaggc cggcagtgca tgatcaaatg ccgggcagga cacctcgacg
      541 atcgcagcgc ccagctcacg cagccgactc accgcaatct cgaaagcacg caacacccca
      601 ggctgataac cttctccgcg gaattgggag accaccccga cccgaacgcc ggccaggtcg
      661 ccggtggcgc ccgcgcgcgc ggcctgtacc accggcggca cgggcgcgtc gattgaggtg
      721 gagtccagcg ggtcatgccc gccgatcagc tcgtgcagta acgccgcgtc gagcaccgtg
      781 cgggccaccg gaccgccttg gtccaggctg gaggagaacg ccaccaggcc atatcgggag
      841 accccaccgt aggtgggttt gaccccgacg gtgccggtca ccgcgctggg ctggcggatc
      901 gagccaccgg tgtcggtacc gatcgccagc ggtgcttcga aagctgccac tgctgctgcc
      961 gacccgccac cggatccgcc tgggacccgg tcgagggccc acgggttacg ggtgggtccg
     1021 taggcagagt tctccgtcga ggaccccatg gcgaactcgt ccatgttggt cttgcccaga
     1081 atcaccacgc ccgccgcccg cagccggcgg gtgactgtgg cgtcataagg cggccgccat
     1141 ccctcgagga tccgcgagcc gcatgtggtc ggcatgtcca cggtggtgaa cacgtctttg
     1201 agcgccaggg gaactccggc cagcggagaa gccggaggat ccccgcgccg caggctgtcg
     1261 tccacagcgg cggcggccac gagtgcgccc tcgctatcta ggtgaagaaa ggcatgcagc
     1321 gcggggtcca cgacggcgat ccggtcaagg tgtgccctgg tcacctcgac tgcggagagt
     1381 tcccgggtgt ggatccgccc ggccaactcg gcggcgggca accgggtcag tgacgttggg
     1441 gagatcatga ttcgtccagg atgcgcggca cccggaaccg gccgtcctcc gtggcgtagg
     1501 cgcccgatag tgcctgctgt tgggtcaatc cagcgcgcgg cacatcctcg cggaacacat
     1561 cggtcaggcc gactgcgtgt gaggtgggcg ggatgttatc ggccgccacc tcgctgaccc
     1621 gggcaaccga agtcaagatc acctcaagct ggccggcgaa caggtcgagc tcctcctcgg
     1681 tgacggccag ccgggcgagg cgggccagat gcgcgacctc gtcacgcgag atggtgggca
     1741 cgcggactcc cgaagtgctt gtgaggttgc tgacccggcg agtctagcct cgggactgtc
     1801 gcgggacgga cgccccggct gcacgctgga ggacgcgata tccgagtcac tctgtcacaa
     1861 tcggcgcccg gcgaccggac gggctcggcg gcctgcgtct ttaactggag gttgtgcatg
     1921 gagtcggctc ggcggatgcg caggtacggc ggccgatgtc ctttctgatc cgggttcagc
     1981 tgccggaccg ccctggcgcg cttggtgcgg tggcgaccgc acttggcaag gtgggggttg
     2041 acatcctcag ccttgacgtc gtcgagcgga gatccggcgt cgccatcgac gatcttgtcg
     2101 tagagcttcc ctccggccgg ttaccggacg tgttgatcac cgcagcggag tcggtcgagg
     2161 gtgtcgaagt ggatgctgtc cgcccgtggg caggtgtgct ggacactcac cgcgagctcg
     2221 agctggtgga ggacgtcgcc gccgatccag cgcacggcct gcagaccttc accgacgggg
     2281 tgcctaagat catccgtgcg ggctgggcga tcgtgctcac cacgtcgcaa gggaaaccgc
     2341 agcgggtcac cgcctcattt gccgcgccgg aaaccgtcgt cgccgacctg ccctggtggc
     2401 cgctacgccg ggccacggtc ttggatggcg aggactcctg ggttcccccg ccgtggcgcg
     2461 agctgggcac agaattggcg gccaccccgc tgggcagctc ggagcgggtc ctgctgatag
     2521 gccgtccggg cggaccgatg ttccgcgcgg cggaagttgc ccgtctggaa catctcgctg
     2581 gaatcgtcgc ggtggtgctg cgcagctgaa ctccggattt ccgtcagggc caccagcact
     2641 tcgcatgagg tgttgtgatc ggcacagcgg gaacgggccg gaaggattag ttgactgtcc
     2701 attcgttggc attccaggtg acgccatcca cagctggacg atagacgttt tcgatgttag
     2761 tcctgtaagc ccatatgatg ggtacctgaa atagcggaag tgataccagg tcatcggcga
     2821 ggagccgatc cgctttcgtt aaagcatctg tctgcacgga ctcggtgtac tgtgtctccg
     2881 cgacatctag aacgctgtcg agggcagggt ttgcgtagtg ctggtagttg agcttgccct
     2941 tcgacgcata gcggtcagcc aaggaccacg ctggggacgt gcgcgcgctc gttaccaggg
     3001 cgacgtcgaa ccggccgcgg gccagaacgt catccacacc gaccggcgtg gcgccgtcgg
     3061 cgatttccat tccggcctgc cggcattgcg tcctgatcag ttcaacttct cgcgagtgag
     3121 ccggcgaacc gtcatgggtg atagtgaagg ccagccgctg acccgccctg gagtaaacgc
     3181 cgtcggatcc cagtatccaa ccagcccgct ccagcgtcac ctgcgccttc tgcgagtccg
     3241 cgatcatctt gtcggagtag agatctacat aggcggcctc gcccggaaag aacgtcaggc
     3301 tgcccagcgg ctgggtgtcc ggccgcacgc cgcggactag ctcgtcatcg accagtttgt
     3361 tgcgatcgat acattgagcg aaagcggtcc gaatgaccgg atccttgaac agcggactgg
     3421 tgagattgag gtccaggtgt tcaagggccg caccaccgcg agtctcgaat gtgacgcccc
     3481 ggcccgacag ttcccgcagc cgatcagcga gcagcggatc ggccggcaac tgcaagacac
     3541 cgaattgccc gctcgccagc ccctgcaccg cgacagcgtt atccgccacg gacgtgagta
     3601 tgatcgtcgc tggaccgccg gggttaccgg gccaggcgtt gttgcggatc agcacagtct
     3661 gttcgttgga cgtcgagccg tcgaactggt agggacccga cgccggcatc atcttggcgt
     3721 cgaaaccggc ccatttattg ttccagaaat cagcgacctt cttcagctca tccggcggcg
     3781 acgccggtcc cagtgcggtg atatctgcga tcccggtctc ccgctcaaga acatgcgcgg
     3841 gaaggatggc gtgctggagg tagttccggc gccaatcagc gtaaggcgat cggtaggtct
     3901 ccacgaaagt attctcgtta cgacattcgg cggtagtgcg atccaatcca cgcgtcgtcg
     3961 ccggcgtgaa atacggtgtg gagccgctgc gtgcgagcca ggccaggtag aaatctctgc
     4021 aattccacgg ctgcccgtcc gaccatcgca cggtgggctt gatcttgtat gtgacgactt
     4081 gggggtcctt cgacgtcagc tcggctgaca ccagcacgtc ggagttgagc agcagcctac
     4141 cgttcccgtc gacgatgaat ggctctgcaa gcacctggtt gagcaccaga tcattgtttg
     4201 ggttcaattt cgcttgagcg ctcgtgttgt tatacgcgga gaacggtgca ccgtgcgcaa
     4261 caaccactgt cggacccggc ggggtcttcg gg
//
LOCUS       DASVXZ010000821         2175 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1304024, whole genome shotgun sequence.
ACCESSION   DASVXZ010000821 DASVXZ010000000
VERSION     DASVXZ010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304024"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /locus_tag="VF788_17425"
     CDS             complement(<1..615)
                     /locus_tag="VF788_17425"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX8935918.1"
                     /translation="MRAVLVVIVLATVAGCSARGGPPPPASPPMSNARPPGAAAPAAV
                     GAADWPTYHHDNARTGVAGQLAPLGTLRRAWQTQLDGAVYGQPLAIGDRIIAATEHNT
                     VYALAAGDGHVLWSAPLGPPVPGSDLPCGNIDPLGITGTAAYDQDSGLVFVVAETRGG
                     QHTLAGVDLASGAVMLRRALPPPKGDEIAHQQRAALTVLDGWVYV"
     gene            complement(632..1072)
                     /locus_tag="VF788_17430"
     CDS             complement(632..1072)
                     /locus_tag="VF788_17430"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8935919.1"
                     /translation="MRLGFRRDPAMAWIDDYLAAWNDHDPVAVTDFMTNDVVYTDFGL
                     GEEFKGIEAVREFVEGMELGFSTDYRFALERAIVTPEAYSYEWTMSGTNDCEDVERGF
                     PATGMRFEIPGVSIGVLRNGKIKDNCDYWNMTTYLMQVGLTPEP"
     gene            1272..1565
                     /locus_tag="VF788_17435"
     CDS             1272..1565
                     /locus_tag="VF788_17435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935920.1"
                     /translation="MAGFVQIVEFKTSRIDEIQAFIQERQPQLEAGSTVRRLIATADR
                     DRPGYYLTIIEFDSYESAMENSNRPETSEFSAHMAKLCDGPPKFYNLDVWQSS"
     gene            1631..2080
                     /locus_tag="VF788_17440"
     CDS             1631..2080
                     /locus_tag="VF788_17440"
                     /inference="COORDINATES: protein motif:HMM:NF021378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEX8935921.1"
                     /translation="MRSSQPVPSAYLRGRMPIMVIELRGVRQRPLLIRRREPLRRRNI
                     DAVAGRANARPDAEEIIMMAQLAIYPAYAYPSWGYGHGVGGPGWWLIFPILFWALVLS
                     VAGYAIYRRSPRQQARAAAERTLAERYARGEISEEELRQRRDAVRAS"
BASE COUNT          397 a          718 c          695 g          365 t
ORIGIN      
        1 gacgtagacc cagccgtcga gcaccgtcag cgccgcgcgt tgctggtggg cgatctcgtc
       61 gcccttcggt ggcggcagcg cccggcgcag catcaccgcg ccgctggcca ggtccacccc
      121 ggccagggtg tgctggccgc cgcgggtttc ggcgaccacg aagaccaggc cactgtcctg
      181 atcgtaggcg gcggtgccgg tgatgccgag cggatcgatg ttgccgcagg gcagatccga
      241 tccgggtacc ggtggaccca gcggcgccga ccacagcaca tgcccgtccc cggcggccag
      301 cgcgtagacc gtgttgtgct cggtcgccgc gatgatccgg tcaccgatcg ccagtggctg
      361 gccgtatacc gcaccgtcca gctgggtctg ccacgcgcgg cgaagcgtac ccagcggcgc
      421 gagctggccg gcgacgccgg tgcgggcgtt gtcatggtgg taagtcggcc agtcggcggc
      481 tccgaccgcc gcgggagccg ccgcccccgg cggccgggca ttgctcatcg gcggtgatgc
      541 cggcggtggg ggtccgccgc gggccgaaca accagccacg gtggcgagca cgatgaccac
      601 gaggacagct ctcatgcgcg acagtctgca ctcaaggctc cggggtgaga cccacctgca
      661 tgagataggt agtcatgttc cagtagtcgc aattgtcctt gatcttcccg ttccggagca
      721 ctccgatcga gacaccagga atttcgaagc gcattcccgt agcgggaaaa ccgcgctcga
      781 cgtcctcgca gtcgttcgtt cccgacatcg tccattcata ggaatacgcc tcgggagtaa
      841 caatggctcg ctcgagcgcg aaacgatagt cggtcgagaa gccgagttcc ataccctcga
      901 cgaattcccg gaccgcttcg atgcccttga actcttcacc gagtccgaaa tcggtgtaga
      961 cgacgtcatt cgtcataaaa tcagtgacgg cgaccggatc gtgatcgttc caggccgcaa
     1021 ggtagtcatc aatccacgcc attgccggat cccggcgaaa tcctagtctc atggccacct
     1081 ccatcgcttt cgctaggcac cggccgcggc cgccctgaca gttcgtgtcg cggctatcac
     1141 taccagcagg agcctcgcac gcccgcggtc aactcggcta gtgcaaccag gggacgcgcc
     1201 gctaaggacc ttgccctgcc gccgacggca ggcggacgct gcgtggtgcc accgaggcta
     1261 aggagacaaa catggcagga ttcgtccaga tcgtcgagtt caagacatcc cggatcgacg
     1321 aaattcaagc ttttatccag gagaggcagc cgcaactgga ggccggcagt accgtgcgac
     1381 gcctcatcgc caccgccgac cgggaccgtc ctggttacta cctgaccatc attgaattcg
     1441 attcgtatga atcagcgatg gagaactcca atcggccgga gaccagcgag ttctccgccc
     1501 acatggccaa gctgtgtgat gggcccccga agttctacaa cctggacgtc tggcaaagct
     1561 cctagccgaa cagcctgggg agcagtcctg gactgatcct ccaaaccgct ccccagagct
     1621 ggctgcggac atgcggtcaa gccagccggt tccctctgca tacctccgcg ggcgtatgcc
     1681 gatcatggtg attgagctgc gtggcgtacg ccagaggcct ctgctcatcc gacgacggga
     1741 accactgcgg cggcggaata tcgacgcagt ggccgggcga gccaacgccc ggcccgacgc
     1801 agaggagatc atcatgatgg cgcaactggc gatttacccg gcctacgctt acccgagctg
     1861 gggatacggc cacggcgttg gtggacccgg gtggtggctc atcttcccga tcctgttctg
     1921 ggcgctggtg ctctcggtcg cgggatacgc gatctaccgc aggtcaccga ggcagcaggc
     1981 acgagccgcg gccgagcgga cgctggctga gcgctacgcc cgcggcgaga tcagcgagga
     2041 ggaactgcgg cagcgcaggg atgcggtccg agccagctag tgacggatgg gcctgttctc
     2101 ccgaactcag cagcagagct gtctcccggg gtgttgtcgt gaactcgacg tgacccgtcc
     2161 catccagctg cacat
//
LOCUS       DASVXZ010000822         1741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1392832, whole genome shotgun sequence.
ACCESSION   DASVXZ010000822 DASVXZ010000000
VERSION     DASVXZ010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1392832"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..572)
                     /locus_tag="VF788_17445"
     CDS             complement(234..572)
                     /locus_tag="VF788_17445"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEX8935922.1"
                     /translation="MSASRLDPHVVLGVPPDASQSEVTTAYRRAVRACHPDGAHPDRE
                     RLAAVIAAYHLLRDPDRRAAHDRHHQASRTMHQASTIPVRVHRTTPQQPYLRVGPVRY
                     HPPNQRRWST"
     gene            1141..1527
                     /locus_tag="VF788_17450"
     CDS             1141..1527
                     /locus_tag="VF788_17450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935923.1"
                     /translation="MIVILWALTAVIFLTGILATANRIESRVHVINSALTPTAQKLTT
                     LPVLNNVADNANQIRDAAANLSPTVGRIADSAASIDGSLKSVNDTVPSINRSAKQINA
                     SVLNIYRSVVSIASALGGQSAVTPSR"
BASE COUNT          301 a          526 c          592 g          322 t
ORIGIN      
        1 tctggaatca atcaagaatc aggcgtaggt ccgcgacctc atgctcggcc ggggagagca
       61 cgcaacgcgc gtccgggcga acggggaaag cttccctgct cccacatggt ggttgccttt
      121 gtctggaatc gtgaccgtgg accccctcgc tgctgtcgga tctgacacgc acgacgcgtc
      181 cgcggcagag gtgtgcgcgc gctcggggca cgagcagcgg gccgactggg ttgtcaggta
      241 ctccagcgtc gctgattcgg cgggtggtag cggacagggc cgacgcgtag gtagggctgt
      301 tggggggtgg tgcggtgaac gcgaacggga atagtgctgg cctggtgcat tgtccggctc
      361 gcctggtggt gccggtcgtg ggcagcgcgg cggtctgggt cgcgcaggag gtggtaggcg
      421 gcaatgacgg cggccagccg ttcgcggtca ggatgggcgc cgtcggggtg gcaggcgcgc
      481 acagcacgcc ggtaggccgt ggtgacttcg gactggctgg cgtcgggggg cacgcccagg
      541 actacgtggg ggtcgagccg ggatgcgctc accgtggtcc tcccgccgtg tctgtccgca
      601 ggatggtgtg agatggctat tgcagggttt gagtgtaatc gtcgcggccg gcggtcgcgg
      661 cgttttccac ggccgggcac agcgtgatca gcgggggcca ggttcaccgc agatgttcag
      721 gcaggttcgg cgccgtcgat atctcgcgcc cggtccggag gcgtggctct accgcggtat
      781 cgaactcggc ctcctcggcg gctagctcct cggggtcgag atcggcctgg gcactgctgg
      841 tcggccacgt cgtgggtgag cttgcccttg gggcacgaga tcaagagccg gactagacgt
      901 caacggagac actccggggt ggcggtcacc ccgcaggccg acgtcatcaa tggcttcctc
      961 ggggtatgca ggacgacggc ggcaggatta acctccaggt acagcaagcc gcccgccacc
     1021 tttcgctacc tctggcgttg cgattagctg gcgcttgggc tgctgactgg ttggactgcc
     1081 acccgtagga ggcgactgat gcggcgtcta acgtccgagg ctctcccagg aatcatgctt
     1141 gtgattgtca tcctctgggc actgactgcg gtaatcttcc tgaccggtat cctggcaacc
     1201 gcgaaccgga tcgagagccg tgtccacgtc atcaatagtg cattgacgcc gaccgcccaa
     1261 aagctcacca cccttccggt cctcaacaat gtcgctgata atgccaatca aattcgtgat
     1321 gcggctgcga acctgagtcc gacggttggg cgtatcgcgg attcagcggc gagtatcgac
     1381 ggcagcttga agtcagtcaa cgacacggtt ccgtcgatca ataggtccgc gaagcagatc
     1441 aacgcatcag tgttgaatat ttaccgaagt gtggtttcaa tcgcttctgc gttgggtggt
     1501 caatccgcgg tgacgccctc tcgctaaccc tcaacccgcg gactatccaa acacgaccga
     1561 caccccggac acgccctggg caacacgggc ccccatgtcc aggtgcccga atcaatgcca
     1621 catacgggcc cgcgcgccga cacatatcat ggaccgcctc cgggggcacc tgccgaccac
     1681 atccaggact cgagcaccgg ggccaaaact tctgacggct agaacgaacc gctgggagat
     1741 t
//
LOCUS       DASVXZ010000823         2512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_592075, whole genome shotgun sequence.
ACCESSION   DASVXZ010000823 DASVXZ010000000
VERSION     DASVXZ010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592075"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VF788_17455"
     CDS             <1..465
                     /locus_tag="VF788_17455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935924.1"
                     /translation="RHKRSADQQPPPPRRVTQNTRRGRTTTASISLSEMLEGLLGLWS
                     DRVQGHGSGHTATYGTRDVRTGWVAVRHGHDTSGASGAQYKLGTNRITQHQPMLTNIN
                     RHLRRPLPSPTPKPWLGLSQRRYISKRSKVQPDHAFAGRAVSGMASHEDAAL"
     gene            462..656
                     /locus_tag="VF788_17460"
     CDS             462..656
                     /locus_tag="VF788_17460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935925.1"
                     /translation="MRLGEQGVGIPPTSRKGYHTPAWGQSWAAAHVTDSSRTAPGWRA
                     VGLRQVNGMPHKSPTVQDRP"
     gene            1542..1682
                     /locus_tag="VF788_17465"
     CDS             1542..1682
                     /locus_tag="VF788_17465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935926.1"
                     /translation="MSEVHADKQIVGMDLHRCQSVLVRMAEAGERLETVRISNDRSTC
                     VR"
     gene            1682..>2512
                     /locus_tag="VF788_17470"
     CDS             1682..>2512
                     /locus_tag="VF788_17470"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8935927.1"
                     /translation="MARAGKAPEVVLEATYGWYWAADTLVELGARVHLAHPLGVKMFS
                     YRRVKNDERDAADLADLLRMGRLPEAWIAPPVTRELRELVRHRANLVALRSSVKCQVH
                     AVLAGAGVPVAMTDVFGVGGQGLLDRVMLSPAARARVDSARRVIECLDFEVEVFTNLA
                     AGRLRGHRGYAAIQAIPGVGPILAAVFVAEIGEVSRFHRAAQLASWAGLTPNITSRIP
                     WCTVVRSPSRAASWCAGLWWRLFNALRTIPGSGSSAIRLARGAEPTSVRSLPPGNSSN
                     W"
BASE COUNT          480 a          717 c          831 g          484 t
ORIGIN      
        1 cgccacaaac gatcggccga ccagcagccg cccccacccc gacgcgtgac tcaaaacacc
       61 cgccgcggcc gtaccacgac agccagtatc tcactttctg agatgctgga gggactgctg
      121 ggcttgtggt cggaccgggt gcaaggtcat ggctcaggac acaccgcgac ctatggcacg
      181 cgggacgtac gaaccggctg ggtcgcggtg cggcatggcc atgacacctc aggcgcgagc
      241 ggtgcccagt acaaattggg tacaaaccgc atcacccaac accaaccaat gttgaccaac
      301 atcaaccggc accttcgcag gccattaccg tctccaacgc cgaagccctg gttagggctc
      361 tcccagcggc gctacatcag caaacgtagt aaagtccaac cagaccatgc tttcgccggg
      421 cgagcagtct ccgggatggc cagtcacgaa gatgctgcgt tatgaggctg ggtgagcagg
      481 gtgtgggcat cccgccgacc tcccggaagg gctaccacac gccagcctgg gggcagagct
      541 gggcggcggc gcacgtgact gattcgtcga ggactgcccc aggctggcgt gcggtcgggc
      601 tgcgccaggt caacgggatg ccacataaga gccccaccgt gcaagaccgt ccgtgatcac
      661 agcgagctga tgatcgtttg gacactttac ggtcacaaaa cccatccaga caacccaaga
      721 agaccacaga caacgagcgt ttgcactcgc gaaacaagca ggtaatcggc actatccaca
      781 aataaccact acgacagtcc gagaatcctt gggttctggt tcgaccccca gacggcccag
      841 gagatgccca gcaccttcgc ctctgtcttg gatcggccgg cgtcgcgctc ttaggtatga
      901 gagcggaggg tgaacgcacg atcctaagca caatgaactc cgtgaggtgc ggcaggtgga
      961 actcaagcat ttctccgcgc gtcgatgacc agtcgaaaca gtgaccagct cggtcggttt
     1021 cacaggttca gcagctggcc gattatcgaa gcagtaatca cacctgctac gttggcatca
     1081 ccgcggattg taatctcgcg ggtggcctca atatacatcc gtaccggtga cccgaactgg
     1141 tgatctttgg ctacaccgag agcgcctccg aagttgagct cccttgacgc gaagtgaaca
     1201 ggcaggtaca attattgatc gaatccatca cttgcccgga ttctatccac cggaaatccg
     1261 gttcctaccg cgaaggcgcc agagatgtgt tcgaccctga gcagctttcc ggctgacact
     1321 gggtccatga ccaccgagat actcgtagtt gggttagcgc tgttgtccta aaactttgtt
     1381 cgacaagaat ggctggatgg gcatcttcta ctccgttgtt tgttatatcg acacttcggg
     1441 tccgcaatcg ttatctggtg cgatgaggag cgtggcctcc gctctccgtg acgtcccgag
     1501 gcactctcgg ggtgctcact tcaacgacga aggagggcct tgtgagcgaa gtccatgcgg
     1561 ataaacagat cgtcgggatg gatttgcatc ggtgccagtc ggtgttggtg cggatggctg
     1621 aggccggcga gcggttggag acagtgcgga tttccaatga ccggagtact tgcgtgcggt
     1681 gatggctcgg gctgggaagg ccccggaggt ggtgctggag gcgacgtatg ggtggtattg
     1741 ggcggcggac acgctggtgg agctgggtgc gcgggtgcac ctggcgcatc cgctgggagt
     1801 gaagatgttt tcctaccggc gggtcaaaaa cgatgagcgt gacgcggctg atttggctga
     1861 tctgttgcgg atgggtcggc ttcctgaggc gtggatcgct ccaccggtga cgcgggagtt
     1921 gcgtgagctg gtgcggcatc gggccaacct ggtggcgctg cgttcgagtg tgaagtgcca
     1981 ggtgcatgcg gtgctggcgg gtgctggggt gccggtggcg atgaccgatg tgttcggtgt
     2041 aggcgggcag gggttgctgg atcgggtcat gctgtcgccg gcggctcggg ctcgggtcga
     2101 ttcggcccgc cgggtaattg agtgcctgga tttcgaggtc gaggtgttca ccaacctcgc
     2161 cgccggtcga ctgcgcgggc accggggtta tgctgcgatc caggccatcc cgggggtggg
     2221 gccgatcctg gccgcggtgt tcgtcgccga gatcggcgag gtgagccgtt ttcatcgagc
     2281 ggcgcagctg gccagctggg cggggctgac cccgaacatc acgagtcgga taccctggtg
     2341 caccgtggtt cgatcaccaa gcagggcagc aagctggtgc gctgggctgt ggtggaggct
     2401 gttcaacgcg ttgcgcacca tacccggctc gggcagctcc gcgatcaggt tggcgcgcgg
     2461 cgcggaacca acatcggtaa ggtcgctgcc gcccgggaac tcgtcgaatt gg
//
LOCUS       DASVXZ010000824         1892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1304408, whole genome shotgun sequence.
ACCESSION   DASVXZ010000824 DASVXZ010000000
VERSION     DASVXZ010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304408"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VF788_17475"
     CDS             <1..472
                     /locus_tag="VF788_17475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935928.1"
                     /translation="LCAIPCIPFAWQGRVGSNFMTAMNSDPVPAGPVYTAITSITDVG
                     NVAPTVYFIPGNGSGNVFVQDKCPGRPVDHMQSLFDAAELGIVMAALTQPGQVDLTRV
                     PNAVCGQLYAAGINPIDATTSIASLYAKNISGIVLGEKATAEPPLRPYAQAAGR"
     gene            complement(448..738)
                     /locus_tag="VF788_17480"
     CDS             complement(448..738)
                     /locus_tag="VF788_17480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935929.1"
                     /translation="MAPVSRRSFLQSAAALGIAVPNLRALNALAVTPDRPVTTALMTA
                     LQRPLPDIQFAINDYIPPPTISTASLCGSRPSTPATNQGEQRPVDQRPAACA"
     gene            complement(1123..1404)
                     /locus_tag="VF788_17485"
     CDS             complement(1123..1404)
                     /locus_tag="VF788_17485"
                     /inference="COORDINATES: protein motif:HMM:NF016070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8935930.1"
                     /translation="MARTPNPYRSLDDSRYDAVVNGRYLKSSFSSANGGCLSFAVAHG
                     LIGFQDDKLPPAERKARTLIFDQQEMAAFIAGAKNGDFDHLLDQPPPAR"
     gene            complement(1409..>1892)
                     /locus_tag="VF788_17490"
     CDS             complement(1409..>1892)
                     /locus_tag="VF788_17490"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5753 domain-containing protein"
                     /protein_id="HEX8935931.1"
                     /translation="IQTRAYAEAVIGNGRAFVPPINVDRVADLRMRRQQRLGEDGFQG
                     LTAVMTEGVIRTMVGGRDVMRDQLRHLIEVTQEYPVTIHILPFSAGALPGSDNFVIFE
                     FPHDLDGDVVYVDSSTAQRIQEERDIVRQCTYTFHAALAQALPARESQDLIRAVLEEL
                     "
BASE COUNT          370 a          585 c          615 g          322 t
ORIGIN      
        1 cctctgcgcc atcccctgta ttcccttcgc ctggcagggc cgcgtcggct ccaacttcat
       61 gactgcgatg aacagcgacc ctgtgccggc cggcccggtc tacacggcca tcaccagcat
      121 caccgacgtc ggcaacgtag caccgacggt ctacttcatc ccggggaacg gaagcggaaa
      181 cgtcttcgtc caggacaagt gcccaggccg accggtcgac cacatgcagt cgttgttcga
      241 cgccgctgag ctggggatcg tcatggccgc tctgacccag cccggacagg tcgacctgac
      301 ccgagtaccg aacgccgtgt gcggccagct ctacgccgca ggcatcaacc cgatcgacgc
      361 caccacgagc atcgcatccc tctacgcgaa gaacatatcc ggaatcgtgc tcggggagaa
      421 ggcgaccgca gaaccgccgc tccgtcccta cgcgcaggca gccggacgct gatcaactgg
      481 acgctgctca ccctgattgg tggctggtgt agacgggcgg gaaccgcaca gggacgccgt
      541 cgagattgtg ggcgggggga tgtagtcgtt gatggcgaat tggatatccg ggagcggtcg
      601 ctgcagcgca gtcatcaggg cagtcgtgac gggccgatcc ggtgtgaccg ccagggcgtt
      661 gagcgcgcgc aggttgggga ctgcaatacc cagtgccgca gccgattgga ggaatgagcg
      721 ccggctcaca ggggccatag gaagcagctc tccttgaggt caacgaatgg aacgaggccc
      781 tggtctggcg ttgtcgcgag tcaaagagcc ggtgaccgga cagatactcc cgtttccatt
      841 ggattgggcg tcacctcttt ccgcacgcga gggccgtcgc ggcgccgaac acgtgcatga
      901 ccgagcagca gccctcgaca gaccgcagac caggggaact tcaccggggg agacgttgtc
      961 tcacggtggt gaacagacga agtccagagt cgagcaggga ttgctactaa ccccacaagg
     1021 accaccgagt tgacagccaa gtaaccgggt ggtcacagaa cactcggtga gggccgcaac
     1081 tactgagaac agcgtgggtg agacatcagc cctatgggac tactaccgag ccggtggagg
     1141 ttggtccagc aggtggtcga agtctccgtt cttggcgccg gcgatgaagg cagccatctc
     1201 ctgctggtcg aagatgaggg tgcgggcctt gcgctcggct ggcggaagct tgtcgtcctg
     1261 gaagccgatc aggccgtgag ccaccgcgaa cgacaggcag ccaccattgg cactgctgaa
     1321 gctcgatttc aggtaacggc cattgaccac ggcgtcgtag cgggagtcat caagtgaacg
     1381 gtacgggttg ggtgtgcggg ccactgggtc acagctcctc caggactgcg cggatcaggt
     1441 cctgtgactc ccgggcgggc agagcctggg ccagagccgc atggaaggtg taagtgcact
     1501 gccgaacgat gtcgcgctcc tcctggatgc gctgtgccgt actgctgtcc acatacacca
     1561 cgtcgccgtc gaggtcatgc gggaactcga aaatcacgaa gttgtccgag cctggtagcg
     1621 ctccagcgct gaagggcagg atgtggatcg tcaccgggta ctcctgagtc acttcgatca
     1681 agtgtcgtag ctgatcacgc atgacgtctc gaccgcccac catcgtacgg atgacgccct
     1741 cggtcatgac agcggtcaga ccctggaagc cgtcttcacc aagccgctgc tggcggcgca
     1801 tccgcagatc cgccacccga tcgacgttga tcggcgggac gaaggcccgg ccgttgccga
     1861 tcactgcctc ggcgtatgcc cgggtctgta tg
//
LOCUS       DASVXZ010000825         1989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1040175, whole genome shotgun sequence.
ACCESSION   DASVXZ010000825 DASVXZ010000000
VERSION     DASVXZ010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1040175"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VF788_17495"
     CDS             <1..456
                     /locus_tag="VF788_17495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HEX8935932.1"
                     /translation="RLLLAIGINPLGLAILETRGRVSGKPRRTPVGNGRMGEEFWIIA
                     EHGFRAGYVRNIQRDPRVRVRLRVGLRYRWVPGLATVLPDDDPLARQRRIIRWHPLRA
                     FNAMNVRVLGADLLTVRVRLLFEGNQDEPKLVDRDSGSHTVISSPTVAR"
     gene            complement(381..1241)
                     /locus_tag="VF788_17500"
     CDS             complement(381..1241)
                     /locus_tag="VF788_17500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8935933.1"
                     /translation="MSTHDAGPASTPRVWLITGASSGFGRAIASAALAGGDIVVATTR
                     RPQALDDLVNEYPERAQAVALDVTAMHATAVVDDVVTRYGRIDVLVNNAGRTQVGALE
                     ETTDQELRYLFELHFFGPAALTKAVLPHMRRQGGGAVVQLSSVGGQITAPGFGAYCAT
                     KFALEGLTETLSQVVDFGVRFLIVEPGAFRTGLFASGSAYLSTAMPEYAATVDPTRAY
                     VSNGDGSQPGDPAKAAAAILTALAAERTPLRLPLGGDAVDGIRAHLATVGEEITVWEP
                     LSRSTNFGSS"
     gene            1417..>1989
                     /locus_tag="VF788_17505"
     CDS             1417..>1989
                     /locus_tag="VF788_17505"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043248 - proteasome assembly [Evidence
                     IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEX8935934.1"
                     /translation="MSSPYELHSHGPLDSPVLLLATESWNDAGLGAQAAIAQILETIP
                     TEVLATFSADHLIDFRSHRPIVRISDGVVDGLRWPEIQLRSGQDIAGSSVLVLVGPEP
                     DMAWHAFVRAVVDLATGLGVRLVVSLGAYAAPVPHTRPVKLMAIATTAELAAQVGVVP
                     GAADMPAGIQTALQEGFAAAGVPAIGVWARV"
BASE COUNT          310 a          670 c          675 g          334 t
ORIGIN      
        1 cgattactgc tggcgatcgg catcaacccg ctgggcctgg cgatcctgga aacccgcggc
       61 cgggtgtccg ggaaaccacg ccgtaccccg gtcggcaacg gcaggatggg cgaggaattc
      121 tggatcatcg ccgagcacgg attccgggcg ggatacgtgc gcaatatcca gcgcgacccg
      181 cgggtgcggg tgcggctgcg ggtgggcctg cgataccgct gggtgcccgg cctcgccacc
      241 gtccttcccg acgacgaccc gctcgcccgc caacgccgca tcatccgctg gcacccgctg
      301 cgggccttca acgcgatgaa cgtgcgggtg ctcggtgcgg acctgctcac ggtgcgcgtg
      361 cggctgctgt tcgaggggaa tcaggatgaa ccgaagttgg tggatcggga cagcggctcc
      421 cacacggtga tctcttcacc caccgtggca aggtgagccc ggatcccatc gacggcgtcg
      481 ccgcccaggg gcaggcgcag cggggtgcgc tcagcggcca gtgcggtgag gatggccgcc
      541 gcggccttgg ctggatcacc gggctgcgat ccgtccccgt tgctcacata ggccctggtt
      601 gggtccactg ttgccgcgta ttccggcatc gcggtggaca gataggccga cccggacgcg
      661 aacagcccag tgcggaacgc accaggctcc acgatcagga agcgcacgcc gaagtccacc
      721 acctggctca acgtctcggt gaggccctcg agcgcgaact tggtcgcgca gtaggcgccg
      781 aagcccggcg cggtgatctg accaccgacg ctggacagct gcaccaccgc cccgccgcct
      841 tgacggcgca tatgcggcag aaccgctttg gtcagagctg ccggtccgaa gaaatgcagt
      901 tcgaacaggt agcgcagctc ctggtcggtc gtctcctcca aggcgccgac ctgggtccgt
      961 ccggcattgt tgaccagcac gtcgatccgg ccgtaccggg tgaccacatc gtcgacgacc
     1021 gcggtggcat gcatggccgt gacgtcgaga gccaccgcct gtgcccgttc gggatactca
     1081 ttgaccagat cgtccaaggc ctgcgggcgc cgggtggtgg cgaccacgat gtcgccgccg
     1141 gccagtgccg cgctggcgat ggcacgcccg aatccgctac tggcgccggt gatcaaccag
     1201 acccggggcg tgctcgcagg tccggcgtcg tgggtgctca tggcgttctc ctcatgatca
     1261 gcacagcgac gagcgccagc ctacctagga tggggctcgc ctcgcccgct aacacaacac
     1321 ctgatgatca ggaatgctca cagcgggctc gaactcgctg ggtgatggga ggatgtgtcg
     1381 agtgaccccc acagacgttg agcggttctg accctgatgt catcccctta cgagttgcac
     1441 tctcatggcc cgctggactc gccggtgctg ctcctggcga cggagagctg gaacgacgcc
     1501 ggtctcggag cccaagctgc catcgcccag attctcgaga caatccccac cgaggtgctg
     1561 gccaccttca gcgcggatca cttgattgat ttccggtctc accgccccat cgtgcgcatc
     1621 tccgacggcg tcgttgatgg cctgagatgg cccgagatcc agttgcggag cggccaggac
     1681 attgcgggca gcagtgtgct cgtcctggtg gggcccgagc cggacatggc gtggcatgcc
     1741 ttcgtacggg ccgtggtgga cctcgccacc gggctgggag tgcggctcgt cgtcagcctc
     1801 ggcgcctacg ccgctccggt tccccatacc cgtccggtca aactcatggc gatcgctacc
     1861 acggctgagc tggcggccca ggtcggtgtg gtgcccggtg ctgcggatat gccggcgggt
     1921 atccagacgg cgctacagga aggtttcgcc gccgcgggcg tccctgccat cggtgtctgg
     1981 gcgcgggtg
//
LOCUS       DASVXZ010000826         2009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1668323, whole genome shotgun sequence.
ACCESSION   DASVXZ010000826 DASVXZ010000000
VERSION     DASVXZ010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1668323"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VF788_17510"
     CDS             complement(<1..270)
                     /locus_tag="VF788_17510"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935935.1"
                     /translation="MNRPIQASEVAPAVREPGDPRVARSRRVIIDAAVALLVERGFGA
                     TTVEAISARSGAAKTTIYRWWPSKGLLAIESFLAAYEREAPFPHGP"
     gene            319..1344
                     /locus_tag="VF788_17515"
     CDS             319..1344
                     /locus_tag="VF788_17515"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX8935936.1"
                     /translation="MKVGIEIPTCTSGMMHPVPFATVSEVVDTALEAEQLGYYDAGGN
                     DHLSTMRFVRDAWANPPDYFEPLLTLAHIAAKTSVLRLTTGIMVLPMREPVLLAKQVA
                     TLDHLSGGRVILGVAVGGYRDEFEAVRPDLAGANRAALTRETIESLRVLLEHPRATYR
                     GKYVHFEDVESFPKPVQAPLPIYSGGNVDGSIRRAAELCQGWLPAKIGPARLAEGRAT
                     LARYARAAGRDPATIAIALQSVVCLGDTSEQARETFLNSSFDLFRTSLKDTMTKGVDL
                     DAYLEMNLVGTPDQVCEKVAAYQRAGLDHLTALLFVGNTVPEMREQIRRFARHVLPAF
                     PETQAAA"
     gene            1438..>2009
                     /locus_tag="VF788_17520"
     CDS             1438..>2009
                     /locus_tag="VF788_17520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005164652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX8935937.1"
                     /translation="MSAEQEGPSVDDPYRWLEEVTGERALSWVRERNAAAVAELTSGP
                     RFEALRSEIREVLDATDRIPYIIRRGEYRYNFWQDREHPRGLWRRTTLAEYAKEQPDW
                     EILLDIDALSREEDENWVYHGAQCLRPDYRRALIWLSRGGADAAVMREFDIDRRQFVT
                     DGFQLPEAKSSVDWIGADSIYIATDFGPGTL"
BASE COUNT          338 a          672 c          677 g          322 t
ORIGIN      
        1 cgggccgtgc gggaagggag cctcccgctc ataggcggcg aggaagctct cgatcgcgag
       61 gagtcccttg gagggccacc agcggtagat cgtggtcttc gcggcgccgg accgggccga
      121 gatagcctcc accgtggtgg ccccgaagcc ccgctccacc agtagcgcaa ccgccgcatc
      181 gatgatcact cgtcgggatc gggccacccg aggatcacca ggctcccgca ccgccggcgc
      241 cacttcactg gcttgaatcg gcctattcac tacgctaccg tatcgtagtg ttagtgccaa
      301 gaggtagggg gcaccgccat gaaggtcggt attgagatcc cgacatgcac gtccgggatg
      361 atgcatccgg tcccgttcgc caccgtctca gaggtggtgg acaccgcgct ggaggccgag
      421 cagctgggct actacgacgc gggcggcaat gaccatctca gcaccatgcg gttcgtgcgc
      481 gatgcctggg cgaacccgcc ggactacttc gagccgctgc tcaccttggc gcatatcgcc
      541 gcgaagacct cagtgctgcg gctcaccacc gggatcatgg tgctgccgat gcgcgagccg
      601 gtcctgctgg ccaagcaggt ggccacgctg gatcacctca gcggtggccg ggtgatcctc
      661 ggcgtcgcag tcggcggcta ccgcgacgag ttcgaggcgg tccggccgga tctggccggt
      721 gctaaccggg ccgcgctgac ccgcgagacc atcgagtccc tccgcgtgct cctggagcac
      781 cctcgcgcca cctaccgggg caagtacgtg cacttcgagg acgtggaaag cttcccgaag
      841 ccggtgcagg ccccgctgcc gatctactcc ggcggcaacg tggacggctc gatccgccga
      901 gccgccgagc tgtgccaggg ctggctcccg gccaagatcg gtccggccag gctcgccgag
      961 ggccgggcca cgctagctcg ctatgcccgc gcggccggcc gtgacccggc caccatcgcc
     1021 atcgcgctgc agtctgtggt ctgcctgggt gacacctccg agcaggctcg cgagaccttc
     1081 ctgaactcct ctttcgacct gtttcgaacc tcgctgaaag acaccatgac caagggtgtc
     1141 gatctggacg cctatctgga gatgaacctg gttggcactc ctgaccaggt ctgcgagaag
     1201 gtcgccgcct accagcgggc cgggctggat cacctcactg cgctgctgtt cgtcggcaac
     1261 accgtgcccg agatgcgcga gcagatccgt cggttcgccc ggcacgtact gcccgcattc
     1321 cccgagaccc aagcggcggc ctgatggggc taccgggttc ccggtaagaa ccgacagtct
     1381 cgaagcagcc aagtgtttga cgaggcggtg acgcggcggg gcggcagact gggtggcatg
     1441 agtgcagagc aggaaggccc gagcgtggac gacccgtacc gatggctgga ggaggtgacc
     1501 ggcgagcggg cgctgtcctg ggtgcgagag cgcaacgccg ctgccgtcgc ggagctgacc
     1561 agcgggcctc ggttcgaggc gctgcgctct gagatccgcg aggtgctcga cgcgaccgac
     1621 cgaattccct acatcatccg gcgcggcgag taccggtaca acttctggca ggaccgcgag
     1681 cacccgcgcg gtttatggcg gcgcaccacg ctcgccgagt atgccaagga gcagccagac
     1741 tgggagatcc tcctcgacat cgacgccctg tctcgagagg aggacgagaa ctgggtgtat
     1801 cacggtgcgc aatgcctgcg accggactac cggcgagcgc tgatctggct gtcccggggc
     1861 ggtgcggacg cggcggtgat gcgcgagttc gacatcgacc gccgacagtt cgtcaccgac
     1921 ggttttcaac tgcccgaggc gaaatccagc gtggactgga ttggtgccga cagcatttac
     1981 atcgccaccg atttcggccc gggaacgct
//
LOCUS       DASVXZ010000827         2429 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1668625, whole genome shotgun sequence.
ACCESSION   DASVXZ010000827 DASVXZ010000000
VERSION     DASVXZ010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1668625"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VF788_17525"
     CDS             <1..181
                     /locus_tag="VF788_17525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEX8935938.1"
                     /translation="PWLRVHVRAGGTIESIAPRSMTIPGTLAEWRSWTGLPFDTTGSI
                     HVPQGVCPVNGVTVC"
     gene            complement(189..1436)
                     /locus_tag="VF788_17530"
     CDS             complement(189..1436)
                     /locus_tag="VF788_17530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8935939.1"
                     /translation="MDGVDEQLVRQLAERARAEGLKLTGEGGLLARLTKVVVESALEG
                     EMDDCLGYGKHDPAGRNGGNSRNGTRPKTVLTEAGPVDIEVPRDRESRFEPVIVAKRQ
                     RRLSGVDDLVISLSAKGLSHGEICAHLAEVYGAQVSKQTISTITDRVLEGMTAWQNRP
                     LDPVYPVIFIDCVHVKIREGTVANRPIYVALAVTVDGHRDILGLWAGEHGDGEGAKFW
                     MRVLSEIKNRGTRDCLIAVCDGLKGLPEAIAAVWPQTIVQTCIVHLLRNSFKYASRRD
                     WAAIAKDLKPVYTAVSESAALDAFAEFSAKWERKYPAIIRLWTNAWAEFVPFLQFDQE
                     IRTIICTTNAIESINARIRRAVNARGHFPTEQAALKCVYLAIMSLDPTGTGQRRWSHR
                     WKAALNAFEITFDGRLFAACNAS"
     gene            complement(1581..2102)
                     /locus_tag="VF788_17535"
                     /pseudo
     CDS             complement(1581..2102)
                     /locus_tag="VF788_17535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010696205.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2241..>2429)
                     /locus_tag="VF788_17540"
     CDS             complement(2241..>2429)
                     /locus_tag="VF788_17540"
                     /inference="COORDINATES: protein motif:HMM:NF027602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4926 domain-containing protein"
                     /protein_id="HEX8935940.1"
                     /translation="DVVVLRRGVPEHGIEPGARAAIIDVHTEPTLAYEVEVVDEETGK
                     TVWWGPVEPEDIEPASDR"
BASE COUNT          424 a          789 c          746 g          470 t
ORIGIN      
        1 cccctggctg cgggtacacg tccgagccgg tgggacaatc gagtccatcg cgccacgatc
       61 gatgaccatc ccgggcacac tcgccgaatg gcgcagctgg accgggctgc cgtttgacac
      121 caccggctca atccacgtgc cgcaaggggt ctgtccagtt aacggtgtaa ctgtgtgttg
      181 atgggtgttt acgaggcgtt gcatgcggcg aacaggcgtc cgtcgaaggt gatctcgaag
      241 gcgttcaggg cggctttcca gcggtgggac cagcgtcgct gtcccgtgcc ggtggggtcc
      301 aggctcatga tcgccaggta gacgcatttc agcgcggctt gttcggtcgg gaagtggccc
      361 cgggcgttga ccgcgcgccg gatccgggcg ttgatcgact cgatcgcgtt ggtggtacaa
      421 atgatcgtac gaatctcctg atcgaattgg aggaaaggca cgaactccgc ccaggcgttg
      481 gtccacagcc ggatgatcgc gggatatttg cgctcccact tggcgctgaa ctcggcgaaa
      541 gcgtccagcg cggcggattc cgagacggcg gtgtagacgg gtttgagatc tttggcgatc
      601 gccgcccagt ccctgcgcga ggcgtatttg aacgagttgc gcaacaaatg cacgatacag
      661 gtttgcacga tggtctgggg ccacaccgcc gcgatcgcct cgggcaggcc cttcagcccg
      721 tcgcacacgg cgatcaggca gtcccgggtg ccccggtttt tgatctcgga cagcacccgc
      781 atccagaact tggcgccctc cccatccccg tgctcgccgg cccacagccc caggatgtcg
      841 cggtgtccgt cgacggtgac cgccagcgcg acgtagatcg gccggttcgc cacggtgccc
      901 tcgcggatct tgacgtgcac gcagtcgatg aagatcaccg gatagaccgg atccagcggc
      961 cggttctgcc acgccgtcat cccctccagc acccggtcag taatggtcga aatggtctgc
     1021 ttggacacct gcgcgccata gacctccgcc aggtgcgcac aaatctcccc atgggacagc
     1081 cccttagccg acagcgagat caccagatca tcaactccgg atagccgccg ctggcgctta
     1141 gccacaatca ccggctcgaa cctcgactcc cgatcccgcg gcacctcaat atccaccggc
     1201 ccggcctcag tcagcaccgt cttaggccgc gtcccattcc gcgaattccc accattacga
     1261 cccgccggat catgcttgcc gtaaccaaga cagtcatcca tctcgccctc caaggccgac
     1321 tcgacgacca ccttggtcaa ccgagccagc agcccaccct ccccggtcag cttcagaccc
     1381 tcggcacgag cccgctcggc cagctggcgc accaactgct catccacacc atccatgccc
     1441 tgtaccgagc cggtggccgc gtccatcgtc acaactgtca ctggtgtctc ctccgtctca
     1501 ggagttacac cgttgagatt acagtcccag tgcctcggga gtcacgagga gcggaggccc
     1561 cgctcctaca tcgcatcagg tcacggaatc gcgggtagcc agggatggcc ttcggcgagc
     1621 atgacgaggg tgtcgaagaa gtgcttgccg tgcttggcgg cagtggatag atagctgcgt
     1681 atcgcgcaga actgctgggc tcctgtgagg cttcgtaagc agccggatac cttctgcctg
     1741 agcttgatca ttcggatgtc gcgttcggat ccgttgttgt cggggggtac tcgccggtcg
     1801 tgggtgaacc ggaggtagtc gtcttgccga tcgattaacc tgcgggccag tgcgtggtgt
     1861 tttctcatcg cggtgccgga tcgcggcgca gtttgggtga ggcccatctg ggcggcgcag
     1921 cggtagcggt ggatctgggt ggacagggtg tcgggatcga tcgcggtggc gtcggcggcg
     1981 atcgcgtcgg cgaccagctt ttgcatggcc acgagcgcgt cagcggcctg gtcggcccag
     2041 caccagtcac ttccggcggg cgcggtgtcg gcgacaccgg ccagttcgcg tagcacgtga
     2101 gcggccttgg cggagacagc gatacgccgt cgcgtgacga tgactcctaa tccggcagtc
     2161 agtccgtaaa tgagcgcctt actccctggt tacgtttctt atcaaagctc gacacgctac
     2221 tcaagaaccg gggatctaaa tcatctgtcc gacgcgggtt caatatcttc tggctcgaca
     2281 ggtccccacc ataccgtttt gccggtttcc tcgtctacga cctcgacttc gtacgcgaga
     2341 gtcggctcgg tgtggacgtc aataatcgca gctcgagccc ccggttcgat cccgtgttcg
     2401 gggactcccc ggcgaaggac cacaacatc
//
LOCUS       DASVXZ010000828         2041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1669103, whole genome shotgun sequence.
ACCESSION   DASVXZ010000828 DASVXZ010000000
VERSION     DASVXZ010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1669103"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VF788_17545"
     CDS             <1..233
                     /locus_tag="VF788_17545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935941.1"
                     /translation="DGEGIEQQQPVAPLRVADAGCREAQAEALAKLLKPGEVECVSRG
                     DLTWPVPDVVPFGVNGDDKAILRSPENPKILR"
     gene            complement(374..577)
                     /locus_tag="VF788_17550"
     CDS             complement(374..577)
                     /locus_tag="VF788_17550"
                     /inference="COORDINATES: protein motif:HMM:NF024751.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8935942.1"
                     /translation="MTVDALSTIALLVAIVYPAMRIIHVFLDNARYHHARAVQDWLAL
                     PGRRIRLHFVPAYCPHLNPIERL"
     gene            complement(586..1209)
                     /locus_tag="VF788_17555"
     CDS             complement(586..1209)
                     /locus_tag="VF788_17555"
                     /inference="COORDINATES: protein motif:HMM:NF024940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8935943.1"
                     /translation="MIRGGFLTSEERQDLTDLARDGTVEHRLARRANALVLLDRGMSC
                     EDVGRVLLIDDDTIRTWHRLFEEDGVDGLAGFNYGGRACQLTLEQQEKLKVGDTLPTR
                     MVGAWIEHEFEVVYESRSGLIALLHRLELEHRKPEAVARPGQTAGLHRRLRDAAEDAA
                     RRRGGDVRRRGASHPWAGGLLGAQRGRGRPGRERVNIHGALDLETAA"
     gene            1315..1752
                     /locus_tag="VF788_17560"
     CDS             1315..1752
                     /locus_tag="VF788_17560"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8935944.1"
                     /translation="MFLAVTPIPSSKPTAETRILICEDDPFIALGWAELLSDEGYTVV
                     GPAYKAETALELAYRHPPTLALIDIDLGGTIDGISVAAELAPLGVSVIFLTADYKRAG
                     VEGRELAADILIKPVVENTVLQAVASALQRKQKTSAGGSVLSA"
BASE COUNT          386 a          639 c          618 g          398 t
ORIGIN      
        1 acgacggcga aggcattgag cagcagcagc cggtcgcgcc gttgcgggtc gctgatgcgg
       61 gctgccgaga ggcccaggcc gaagcgctcg caaagctgct gaaaccgggg gaggtagagt
      121 gcgtttcgcg tggtgatctc acgtggcccg ttccagatgt cgtccccttc ggtgtcaatg
      181 gtgacgataa agctatactc cgttcacctg agaacccgaa aatcctccgg tgatatgatg
      241 cgaaagttat cggtcacact atcgcataac atgtgccact tgctgggaac gtcgttccgc
      301 aagaagccaa gcacggcttc gcagaagccg ttgtaagtgg catgacatcg gttgtgggtc
      361 acggttttgt gcatcagaga cgctcgatcg ggttcagatg cgggcagtag gccggcacga
      421 aatggagccg gatccgccgg ccgggcaggg ccaaccagtc ctgaaccgcc cgggcgtggt
      481 ggtagcgggc attgtccaga aacacatgga tgatccgcat cgccgggtac acgatcgcga
      541 ccaggagagc gatcgtgctc agggcgtcga ctgtcaccac ctcgatcatg cggcggtttc
      601 cagatcgagg gcgccgtgaa tgttcacgcg ctcccggcct ggtcgaccgc gacctctttg
      661 ggcgcccagc agcccaccgg cccatgggtg ggatgcaccg cgtcggcgaa catcaccgcc
      721 tcgtcgtcgg gcagcgtctt cagcagcgtc tcgtaggcgt cgatgaaggc ctgctgtctg
      781 gccgggtcga gctaccgcct cgggcttgcg atgttccagt tccagacgat gcaacagcgc
      841 aatcagcccg gaacggctct cgtagacaac ctcgaactcg tgttcgatcc acgctccgac
      901 catccgggtc ggcaaggtgt cgccgacctt cagcttttcc tgctgctcca gggtcaactg
      961 gcaggcacga cccccgtaat tgaacccggc caggccatcg accccgtctt cctcgaaaag
     1021 ccggtgccac gtccggatcg tatcgtcgtc gatcagcagc acccgaccaa catcctcgca
     1081 gctcatcccg cgatccagca gcaccagcgc gttcgcacgc cgggccagac gatgctcgac
     1141 cgtcccgtcc cgagccagat cggtcaggtc ctgccgttcc tctgaggtca gaaagccgcc
     1201 gcgaatcata gctcccagaa gaatccctca tccccgctct ggcaagcggt tttttcgaca
     1261 tctcacggag tcgcggtata cattgttcat gaccggttct gaaggttgcg ccccatgttt
     1321 ctcgccgtca cccccattcc cagcagcaag cccacggctg agactcgtat tttgatctgc
     1381 gaagatgatc ccttcattgc cctgggatgg gctgaacttc tgtctgatga gggctacacg
     1441 gtggtcggtc ccgcttacaa agctgagacg gctttggaac tggcgtaccg acatccgcca
     1501 accttggcgc tgatcgatat cgacctgggt ggaaccatcg acggcatttc tgtcgccgct
     1561 gaattggccc ccttgggtgt gtcggtcatt ttcctgaccg ccgactacaa gagggcgggc
     1621 gtggaaggac gtgagcttgc cgccgacatt ttgatcaagc cggtggtgga gaacaccgtt
     1681 cttcaagcgg ttgcctcagc ccttcagcgg aagcaaaaga ccagcgccgg cgggagcgtt
     1741 ctgtccgcgt gacaagtccg acatgacctt cggtcaaacc aagggtcctt ggccgtccca
     1801 cctacggtgg gtgaggcgtt catcgcgccc accctttatg tcgagcctca tccatgtgag
     1861 tatcgagcag taccgcatgc tcccagtcca gcaacatccg gagtttgggg atgctggggg
     1921 aggagcggag aaggacttcg gcagcacaaa gccgccggtc tgccgcgccg gtactgacta
     1981 tcccagcgtt cccgatgcgg ctggacgctg aagggccggc gctggaggtg ccaggcagct
     2041 c
//
LOCUS       DASVXZ010000829         5534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_772362, whole genome shotgun sequence.
ACCESSION   DASVXZ010000829 DASVXZ010000000
VERSION     DASVXZ010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5534
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_772362"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..826
                     /locus_tag="VF788_17565"
     CDS             <1..826
                     /locus_tag="VF788_17565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HEX8935945.1"
                     /translation="VLGAALSGAGHAVVGVSAVSRASLRRAADLLPKAPVLPPDDVVR
                     RSDLVLLAVPDDVLPDLVTGLAVTCAFRAGQIVVHTSGSRGVDVLAPAIALGVLPVAL
                     HPVMTFTGRAEDTARLAGACVGVTVADETGWSVGEALVLEMGAEPVRVPPEARALYHA
                     ALAHGANHLATLVRDAVDTLELAGVVPAERLLGPLLEAALDNTLRHGDRALTGPVARG
                     DLDTVRLHLRVLAESAPELLAPYRTQASRTADRAEAAGLLAPAAATQIRETLQGPR"
     gene            823..1701
                     /gene="panC"
                     /locus_tag="VF788_17570"
     CDS             823..1701
                     /gene="panC"
                     /locus_tag="VF788_17570"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEX8935946.1"
                     /translation="MRSLTVYDEPAELSAVTRTLRQAGRPVALVPTMGALHAGHRALI
                     QVARAIPDAVTVVSIFINPLQFDSRIDLDRYPRQLEADLAVCRDEDVELVFAPTAEKM
                     YSPGSSTTVAPGALGAELEGASRPGHFIGVLTVVAKLFGIVTPDRAFFGEKDYQQLVL
                     IQRMVGDLWMDVQVIGVPTVREPDGLALSSRNIHLDAKARAAAAGLPAALAAGARAGV
                     HGPEAVLTAANDALCGRPGVALDYLALRDPELRPAPQRGPARLLLAATVGNTRLIDNV
                     CLHLGFAAGPDGRGGL"
     gene            1701..2105
                     /gene="panD"
                     /locus_tag="VF788_17575"
                     /pseudo
     CDS             1701..2105
                     /gene="panD"
                     /locus_tag="VF788_17575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946423.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
     gene            2128..2913
                     /locus_tag="VF788_17580"
     CDS             2128..2913
                     /locus_tag="VF788_17580"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEX8935947.1"
                     /translation="MLLTVDIGNTNIVLGLFDGTGPDATLLHDWRMRTDARMTADEIA
                     LIFRGLLGEYSGKVIGVAALSTVPAVLRELRVMVDRYWPQLPRVIVEPGVRTGVPLLC
                     DNPREVGADRIVNTLAAYTLYGGPAIVVDFGTSTNFDAVSARGEFLGGALAPGVEISI
                     DALATRAAQLVKVQLVRPRSVIGKNTVEALQSGLLFGFAGQVDGLVRRIATELAPGAE
                     SEVVVIATGGLAPLLIAESQTITHHAPHLTLRGLRMVYERNIT"
     gene            complement(2944..3702)
                     /locus_tag="VF788_17585"
     CDS             complement(2944..3702)
                     /locus_tag="VF788_17585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8935948.1"
                     /translation="MDELPAHRALSFGSVAARYALHRPGYPDEAVAWALESLPNSARI
                     LDLAAGTGKLTEAILRCGIPAASVLAVEPDAGMRAELRRGLPQIAVRPGSAEQIPADD
                     GALKAVLVGQAFHWFEPDRALTEIARVLRPSGILAVLGNTEDDSVAWVAELTEVAQAA
                     QTAGSVGGSFADIPEHAAFSGPEQRRFCWRWPRTIESLLETVSTHSWALISSPDQRTA
                     AFRAIRRFLEQHPATRDGAFDLPMHTVVLRTTRT"
     gene            4412..4759
                     /locus_tag="VF788_17590"
     CDS             4412..4759
                     /locus_tag="VF788_17590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsr2 family protein"
                     /protein_id="HEX8935949.1"
                     /translation="MAQKVTVTLVDDLDGGTAEETVEFGIDGVSYEIDLSAGNAGKLR
                     DSLSDYVSNARKAGGRRKAAGPVRRTSSGGRASVDREQNAAIREWARKNGFNVSDRGR
                     IPAEVLDAYHKGN"
     gene            complement(4816..5307)
                     /locus_tag="VF788_17595"
     CDS             complement(4816..5307)
                     /locus_tag="VF788_17595"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HEX8935950.1"
                     /translation="MKGFAGKPAHAPLTDVGIGAYTAGVAMLVAGAAGFQPAAMATAS
                     VITIGIGLIAAIPTIITGLVDLFGIPADAPARTVGWWHLTLMSSATGMFAGTFRLQLA
                     GYYDGVIITSAVTLGVISWILLLVGGYLGGALTFVYGVRVLKKPDTATADALIPGRAD
                     HTD"
BASE COUNT          939 a         1785 c         1845 g          965 t
ORIGIN      
        1 ggtactgggc gccgctctct ccggcgcggg acacgccgtg gtcggggtca gcgcggtgtc
       61 ccgcgcatcg ttgcggcgtg ccgcggacct gctgcccaag gcacccgtgt tgccacccga
      121 tgacgtagtg cgccgctcag atctggtgct gctcgccgtt cccgacgacg tgctgccgga
      181 cctggttacc gggctcgccg tgacctgcgc gtttcgagct ggccagatcg tggtgcacac
      241 cagcggttcc cggggtgtgg acgtgctggc gccggcgatc gcgctcggag tcctgcccgt
      301 ggccctgcac cccgtcatga ccttcaccgg ccgcgccgag gacaccgcgc ggctcgcggg
      361 ggcctgtgtc ggcgtcaccg tcgctgacga gacgggctgg agcgtcggag aagcgctggt
      421 gctggagatg ggagccgagc cggtgcgtgt gccgcccgag gctcgtgcgc tctaccacgc
      481 ggcgctggcg cacggcgcca accacctggc caccctggtg cgcgatgcgg tggacaccct
      541 ggaactcgcg ggagtggtgc ccgctgaacg gctgctcggc ccgttgctgg aggcggcgct
      601 ggacaacaca ctgcgccacg gtgaccgtgc cttgaccggg ccggtggccc gcggcgacct
      661 cgacaccgtc cggctgcacc tgcgggtgct cgcggagtcc gccccggagc tgctcgctcc
      721 ctaccgcacg caggcgagcc gcaccgccga tcgggccgaa gcagccgggt tgctggcacc
      781 ggcggccgcc acccagatcc gggagacgct gcaggggcca cggtgaggag cctgacggtc
      841 tacgacgagc ccgccgagct gtccgctgtg acccggacgc ttcgccaggc tggacgccca
      901 gtggcactgg tcccgacgat gggagcgctg cacgccggcc accgggcctt gatccaggtt
      961 gcccgggcca tccccgatgc ggtcacggtg gtgtcaatct tcatcaatcc actgcaattc
     1021 gattcgcgga tcgatctcga ccggtacccc cgccaactcg aggcagatct cgccgtgtgc
     1081 cgcgacgaag acgtcgagct ggtgttcgcg cccaccgccg agaagatgta ctcaccagga
     1141 tccagcacga ccgttgcacc cggggctctg ggcgccgagc tggagggcgc cagccggccg
     1201 ggccacttca tcggcgtgct caccgtcgtg gccaagctct tcggcatcgt cacgccggac
     1261 cgtgcattct tcggcgagaa ggattaccag cagctcgtgc tgattcagcg gatggtgggc
     1321 gacctgtgga tggacgtcca agtgatcggc gtgcccacgg tgcgagagcc agacgggctc
     1381 gcgctgtcct cccgcaacat ccacctggac gcgaaagctc gggccgccgc ggctgggctc
     1441 ccggcggccc tggccgccgg ggcgcgggcc ggtgtccatg gccccgaagc ggtcctcacc
     1501 gccgccaacg atgcgctgtg tggacgacct ggcgtggcgc tggactacct ggcactgcgt
     1561 gatcctgagc ttcgcccggc tccgcagcgg ggaccggccc ggctgctact cgccgccacc
     1621 gtagggaaca cccgactgat cgacaacgta tgcctgcacc tgggattcgc agccggcccg
     1681 gatggacgtg gaggactgtg atgctcagga cgatgctgaa gtccaagatc caccgagcta
     1741 ccgtgacgca gtcggacctg cactatgtcg ggtcggttac cgtggacgaa gacctcatgg
     1801 acgctgccga tctgctcgcc ggggagcggg tcgcgatcgt ggatgtcacc aacggcgcgc
     1861 ggctggagac ttacgtcatc cccggccccc gttccagcgg cgtgatcggg atcaatggcg
     1921 ccgccgcaca tctggtggcg cccggggatc tggtcatcct catcgcctac gggaccatgg
     1981 atgaagccga gtcacggcgc taccgccccc gagtggtatt cgtcgacgcc gacaaccgga
     2041 tcgtgcacca gggcggtgac ccggcgcatg ctccagccgg cggttcgctg attgccggct
     2101 cggccggcga gaggcgaagc tgagcaggtg ctgctgaccg tagatatcgg caataccaac
     2161 atcgtcctcg ggcttttcga cggcaccggc ccggacgcca cgttgctgca cgactggcgg
     2221 atgcgcaccg acgccaggat gaccgccgac gagatagcgt tgatcttccg cggactactc
     2281 ggggagtact ccggcaaggt catcggtgtt gctgcgctgt ccacagttcc cgccgtgctg
     2341 cgggagctgc gggtgatggt ggaccgctac tggccgcagc taccgcgagt aatcgtggaa
     2401 ccaggggtgc gcaccggagt gccattactc tgcgacaacc cccgtgaggt gggcgccgac
     2461 cggatcgtca acacactggc cgcctacacc ctctacgggg ggccagccat cgtggtggac
     2521 ttcggtacct ccaccaattt cgacgccgtc agcgcgcgtg gggagttcct cggcggtgcg
     2581 ctcgcgcccg gcgtcgagat ctccatcgat gcgctcgcca cccgggcagc gcaactggtg
     2641 aaggtacagc tcgtccggcc tcggtcagtg atcggcaaga acaccgtgga agcgctgcag
     2701 tccggtttgc tgttcgggtt cgcgggccag gtcgacgggc tggtccgccg gatcgccacg
     2761 gagctggctc cgggcgccga gagcgaggta gtggtgatcg cgaccggcgg attggctccc
     2821 ttgctcatcg ccgagtcgca gaccatcacc catcacgccc cccacctcac gctgcgtggc
     2881 ctccgcatgg tctacgaacg caacatcacc taaccccgcg taacgcacgg tctgtcgtgc
     2941 cggtcaggtg cgggtggttc tgagcaccac agtgtgcatc ggtagatcga aggctccatc
     3001 gcgggtggcg gggtgttgtt cgaggaaccg gcgaatcgct ctgaacgcgg cggtccgctg
     3061 atcaggcgag ctgatgagtg cccacgagtg agtcgatacg gtctccagaa gtgattcgat
     3121 cgtacgcggc cagcgccagc aaaaccgacg ctgttccggc ccgctgaaag cagcgtgttc
     3181 gggtatatcg gcgaagctac ctccgacact tccagccgtt tgcgctgcct gagcgacctc
     3241 ggtaagctcc gccacccagg ccaccgagtc gtcctcggtg ttgccgagca cagccaatat
     3301 gccactcggt cgcaataccc gggcaatctc ggtaagtgcc cggtcgggtt cgaaccagtg
     3361 gaaagcctgc ccgactagga ccgccttcag tgcaccgtcg tctgcgggga tctgctccgc
     3421 cgaccccggg cggacggcga tctgtggcag cccccggcgc agttccgcgc gcatcccggc
     3481 gtccggttcg acggcaagca ctgacgccgc aggtattcca catcgcagta tcgcttcggt
     3541 gagcttgcca gtgccggcag cgagatcgag aattcgcgca ctgtttggta gcgattccaa
     3601 agcccacgcc accgcttcat ccgggtagcc cggccggtgc aatgcgtacc tggcggccac
     3661 ggaaccgaaa gaaagggcac gatgcgccgg tagctcgtcc acgtcaggag acggtaccgg
     3721 cagtcaacgt gaatccagcg aatcactagg ttatcccgca ggaggacccc agcgatcctc
     3781 tggatgatga cctgcctgac cagatgcggc gtgtgccgcc agaagcggga gcagatgctg
     3841 cttcctgtcg ggatccgtac ccccttgagc catcccccga gccgcctcga cgctgtcccg
     3901 gtgagcaggt atccggtact ggtcgaagtt gtttttctgc gcaataccgg caggtttgct
     3961 ttgccagccg gcggtagaga ccgaacttca gaccatgctc agcctgaccg acgtgggtgg
     4021 tgtttgaact caaccggatg ttccctggta gcggagttgg tcgaggtcta cacgaagctg
     4081 gtacaccttc acgtgcaacg gaacgtttcc gcgcgcgctc cgcgggcggt gatgacgagg
     4141 tgatgccgct ccatcgtgac ttcttgaggt catgcagtat ggaatgccgt caagtggcgg
     4201 catggaatgg gatcgaccgg ctgagcatgg cgctcaccgg ttcgggtatc cgcgagagga
     4261 tcggtgtttc cgctggtaag accacaatga gtcgactcca ggggtgggtt gatttcgcaa
     4321 tcttctcgga aatgggctaa ccttccgttg tcgttgtgga gtcgtcgtgc gatggctccg
     4381 tccaccacgt ccctgaggga ggacgacgcg catggcgcag aaggtcaccg ttaccttggt
     4441 cgatgacctc gacggaggta ccgccgaaga gaccgttgag tttggtatcg acggtgtgtc
     4501 ttacgagatt gatctgtcgg cgggtaacgc tgggaagctg cgtgactcgc tgtctgacta
     4561 tgtcagcaac gcccggaagg ctggcgggcg gcgcaaggct gcaggtcctg ttcgccggac
     4621 cagtagcggt ggtcgggcat cagtagatcg tgagcagaac gccgcgatcc gggagtgggc
     4681 ccgcaagaac ggtttcaacg tctcagaccg tggtcgtatc ccggctgagg tattggacgc
     4741 ttaccacaag ggaaactaag gacggtatgc accggtgccg tccagttggg ccggcaccgg
     4801 tgtgttgcgt ctggatcagt cagtatgatc agcgcgacct ggaatgagcg cgtcagccgt
     4861 cgctgtgtct ggcttcttga ggacccgtac tccgtagacg aaggtgagcg cgccaccaag
     4921 gtagccgccg accaacagca atatccaaga gatgacccca agggtcacag ccgaagtaat
     4981 gatcacgccg tcgtagtacc cggccagttg taagcggaac gttccggcga acatgcccgt
     5041 tgcgctggac atcagcgtta ggtgccacca accgacggta cgcgcgggcg catccgcggg
     5101 aataccgaac aggtccacca agccggtgat gatggtgggt atagcggcga tgagaccgat
     5161 cccaatcgtg atcactgagg cagtggccat cgcagccggt tgaaatccag ccgcgccagc
     5221 cacgagcatc gcgacgccgg cggtgtaggc accgataccg acatcggtca gcggtgcgtg
     5281 cgcaggcttg cctgcaaacc ccttcaccag gctcaccatc tcaacggctc cctccgccga
     5341 agcatgaaca ctcagcgggc agtgttaccc gcatcacagt aatcgtgcgg agccgtccct
     5401 cggttcacca cgaggcgggt caaagcgtat tcggaacacg aacgttactg gagatacgat
     5461 ctccgatggg ttcaggcctg gttgagggtg ctgaagatgc gggtccgatc tgcttcgcag
     5521 acacgggggc agct
//
LOCUS       DASVXZ010000830         2931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1126794, whole genome shotgun sequence.
ACCESSION   DASVXZ010000830 DASVXZ010000000
VERSION     DASVXZ010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126794"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VF788_17600"
     CDS             complement(<1..246)
                     /locus_tag="VF788_17600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007031767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935951.1"
                     /translation="MRTVVVAGHGMVGHRLVEALVGRDVQQQWRIVVLAEEGRPAYDR
                     VALSSYVDSWDAEALSLPAVTDERVELRLGDPCMTIDR"
     gene            complement(457..1842)
                     /locus_tag="VF788_17605"
     CDS             complement(457..1842)
                     /locus_tag="VF788_17605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010229275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite transporter"
                     /protein_id="HEX8935952.1"
                     /translation="MSTTEITVPGTPARGGRWINHWEPEDPGFWEQTGKRVANRNLWF
                     SIFSEHIGFSMWTVWSVLVLFMGKAYGIDPAGKFLLVSLPALVGGLTRIPYTMAPAKF
                     GGRNWTIVSALLLLIPTIMAIIVMRPGTSFTTFVIVAALGGLGGGNFASSMVNINAFF
                     PEGKKGWALGLNAGGGNIGVPVVQLLGLLVIATVGAAYPRLVLVIYIPLILIAALCAA
                     RYMDNISSVRNDTGALREAIREPQTWAMSFLYIGTFGSFIGYSFAFGLVLQTQFGRTP
                     LQAASVVFIGPLIGSLIRPAGGWLADRFGGAKVTLWNFVGMALATAVVIMASNQKSLP
                     LFMVGFIALFVLSGIGNGSTYKMIPSIFNVKAQAAISSGEPIQRALMRARRLSGAVIG
                     IAGSIGAMGGLLINLAFRQSFLTTKSGVPACWAFLIFYGACVLVTYVVYLRRAPAAVT
                     SGAPQLAYAQV"
     gene            2215..2400
                     /locus_tag="VF788_17610"
     CDS             2215..2400
                     /locus_tag="VF788_17610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935953.1"
                     /translation="MAEQLEPQDPSEEAASPVPNRRERRGKKTGAPTHHGGKFAVPPR
                     SGPAVPSRQYSTRRRSG"
     gene            complement(2494..>2931)
                     /locus_tag="VF788_17615"
     CDS             complement(2494..>2931)
                     /locus_tag="VF788_17615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX8935954.1"
                     /translation="SYRTIKIRRDPAAEPITELIDYEQFCGVVSDAAASAAAGSTITA
                     AELKEMIDSGKDFALIDVREPNEYEIVRIPGSTLIPKDRILSGEALAELPQDKPLVLH
                     CKSGQRSAEALAALHKAGFRDAVHVGGGVLAWAKQVDPSLPIY"
BASE COUNT          553 a          996 c          935 g          447 t
ORIGIN      
        1 ccggtcaatc gtcatgcagg ggtcgcccag ccgcagctcc acccgctcgt ctgtgacggc
       61 gggcaggctc agcgcctcgg catcccagga atccacatat gacgagagcg caacccggtc
      121 gtaggccggc cggccctcct cggcgagcac cacgatccgc cactgctgct ggacgtcccg
      181 gccgaccagc gcctccacca gccggtggcc gaccatgcca tggcctgcga cgacgactgt
      241 gcgcatcgcg ggagctcctt cctaaccacc gggtacgacc ggtgtgttgc ccacttccag
      301 ctcgctggcc gaggagcgag cagcacaaga ggtgagctgc cccgcagaac ccagcagctc
      361 accagccatc cgagcccttg ctgacatctt gagcgcgttt cgtgaacgca gtgtttccag
      421 cctgtttcgt cacgctcgcc catcgcatcc ggaccatcac acctgggcgt aagccagttg
      481 tggggccccg gacgtcacgg cagcaggagc ccggcggagg tagaccacgt aggtgacgag
      541 aacgcacgcg ccatagaaga tcaggaaggc ccagcacgcg ggtaccccgg atttcgtggt
      601 gaggaaggac tggcggaacg ccaggttgat gagcaaccca cccatcgccc cgatggagcc
      661 cgcgataccg atcaccgcgc cggacagccg gcgtgccctc atcagtgcgc gctgaatcgg
      721 ctcgcccgag gagatcgccg cctgagcctt cacattgaag atcgacggga tcattttgta
      781 agtggaaccg ttgccgatcc cggagagcac gaacaacgcg atgaagccca ccatgaacag
      841 cggcagtgac ttctggttgg aggccatgat caccacagcg gtggccaggg ccatcccgac
      901 gaaattccag agggtgacct tggcaccacc gaaccggtcg gccagccaac cgccggctgg
      961 gcgaatcagc gagccgatca gcgggccgat gaacaccacc gaggccgcct ggagcggggt
     1021 gcggccgaac tgagtttgca gcacgaggcc gaaggcgaag ctgtaaccga tgaacgagcc
     1081 gaaggtgccg atgtagagaa acgacatcgc ccaggtctgc ggctcgcgga tcgcctcacg
     1141 cagagctccg gtgtcgttgc gtaccgagga gatgttgtcc atgtatcgcg ccgcacacag
     1201 cgcggcgatc aggatcagcg ggatgtagat aaccagcacc agacggggat aggcggcgcc
     1261 caccgtcgcg atcaccagca agccgagcaa ctgcaccacg ggcacgccga tgttcccacc
     1321 gccggcgttg agccccagcg cccagccctt cttgccctcc gggaagaagg cattgatgtt
     1381 gaccatggac gaggcgaagt tgcccccgcc caggccaccg agtgccgcga cgatcacaaa
     1441 cgtcgtgaac gacgtgcctg gacgcatgac gatgatcgcc atgatggtcg ggatcagcag
     1501 taacaaggcg ctgacgatcg tccagttgcg cccgccgaac ttggccggcg ccatggtgta
     1561 ggggatccgg gtcaggccgc ccaccaaggc tggcagggac accaggagga actttcctgc
     1621 cgggtcgatg ccgtaggcct tgcccatgaa gagcaccagg accgaccaga cagtccacat
     1681 cgagaatccg atgtgctcgg agaagatcga gaaccacagg ttccgattcg ctaccctctt
     1741 ccccgtctgc tcccagaagc cgggatcctc cggctcccag tggttgatcc atcgcccccc
     1801 gcgggccggt gtccccggca ccgttatctc ggtcgtgctc atagcgcctc cagaggtggt
     1861 ggatatgagc agcgacgcta tgtgccggtt atgttcacga tgttgctact tgttgcaggg
     1921 ccgagaactc ccgttcacat gacggtgcga ccgtgccgtg agggccgggt gtacgccggg
     1981 ttcgcgaccc gccggaaacg tggatgcacc gcagcggcgt ccgcgctagc gtggacgcat
     2041 gatctgctga tctcgtcagc cggcgccgag cacgtggacg catgtcatcg cggtcccaac
     2101 gtcggcgcgt agcaccgcac tcttgatgcc cttggactgc tcagtccggc tggcgccatg
     2161 cccagacgcc gcgccgctac tgctgcccta tcaacgccag aacaaggaga ctcgatggca
     2221 gagcaactcg aaccccagga cccatccgag gaggctgctt ccccggtacc caatcgccgc
     2281 gaacgccgcg ggaagaagac cggagctccg acgcaccatg gtggcaagtt cgccgtgccg
     2341 ccccggtccg gcccggcagt accatcccgg cagtactcca cccgccgccg cagcggctga
     2401 gcggcgcgcg tcacgaccac aagtggcaac cgctcggcgc gctgtggcag ccggccgcgc
     2461 gccgagcggg acggagcggg tgacgtgccc cgctcagtaa atgggcagtg agggatcgac
     2521 ctgcttggcc caggccagca ccccgccacc gacgtgtacg gcgtcgcgga agcccgcctt
     2581 gtgcagcgcg gccagcgcct cggcggaacg ttgcccggat ttgcagtgca gcaccagcgg
     2641 cttgtcctgg ggcagctccg ccagcgcctc gccggacagg atccggtcct tgggaatcag
     2701 cgttgagcca gggatcctga cgatctcgta ctcattcggc tcccgcacgt cgatcaaggc
     2761 gaagtcctta ccggagtcga tcatctcctt gagctcggca gcggtgatcg tcgagcccgc
     2821 cgccgccgag gcggccgcat cgctgacgac gccgcagaac tgctcgtagt cgatcagctc
     2881 ggtgatcggc tcggcggccg ggtcccggcg gatcttgata gtgcggtagc t
//
LOCUS       DASVXZ010000831         9133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1394603, whole genome shotgun sequence.
ACCESSION   DASVXZ010000831 DASVXZ010000000
VERSION     DASVXZ010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9133
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1394603"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..663
                     /locus_tag="VF788_17620"
     CDS             <1..663
                     /locus_tag="VF788_17620"
                     /inference="COORDINATES: protein motif:HMM:NF024896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8935955.1"
                     /translation="AFVYFFAQLYPFSLIAEPSSWTAAAAGGCVLLRRIALQRAGGLP
                     RIRNRLIDDVALGRLMKRSGARIWLGFTNNPPEVRSVRPCPHLADLWRMVTRTAYTQL
                     RTSPVLLAGTLAGLGLLYAVPPVAGLTGLARRQAVPAVAGLGAWVATTITQAPVLRLY
                     GLSPLRGLALPAVATLYAAMTLDSARRHATGCGGVWKDRDVIPNSGDQLQPLVDPHPS
                     QT"
     gene            complement(621..3443)
                     /locus_tag="VF788_17625"
     CDS             complement(621..3443)
                     /locus_tag="VF788_17625"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12-dependent ribonucleotide reductase"
                     /protein_id="HEX8935956.1"
                     /translation="MTETVGTPAGAVGSSPAAQPKRALRLERVYTTEHRHPYDEVTWQ
                     RRDVVMTNWRDGTVNFEQRGVEFPDFWSVNAVNIVTSKYFRGAVGSEQREASLRQLID
                     RVVTTYTAAGVQHGYFATDTDKEIFSHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSA
                     CFILSVDDTMDSILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSSGGTASGPVSFMR
                     GADASAGTIKSGGATRRAAKMVVLDVDHPDISEFVQTKASEERKIRVLRDAGFDMDLG
                     GKDITSVQYQNANNSVRVSDEFMRAVEIDGEFGLRARTTGEIIETVRARELFRDITKA
                     AWECADPGLQYDGTINDWHTCPESGRITASNPCSEYLHLDNSSCNLASINLMKFLRED
                     LTFDAELFVKTVELVITAMDISICFADFPTKTIGDTTRAFRQLGIGYANLGALLMATG
                     HAYDSDGGRALAAAITSVMTGTAYKRSAELAGVVGPYEGYARNAEPHQRVMRKHAAAN
                     DLIRTYDHNDRAVQKAATKAWQDGLRIGENNGWRNAQASVLAPTGTIGFMMDCDTTGI
                     EPDFSLVKFKKLVGGGSMQIVNQTVPKALAALGYQKEQSEAVIEYISEHGHVINAPGL
                     RPEHYEVFDCAMGERAISPMGHVRMMAATQPFISGAISKTVNMPETAVVADIEEIYLQ
                     AWKMGLKALAIYRDNCKVGQPLSTGKSSTAAADKVVVEARPVRKRLPKKRPSETVSFT
                     VGGAEGYLTAGSYPDDGLGEIFVKMSKQGSTLAGVMDAFSMAISIALQYGVPLETYVS
                     KFVNMRFEPAGMTDDPDVRMATSVVDYLFRRIALDHLPKDKRDQLGILSAEERTMQVS
                     ADYGAYTDREVDVESLRTSVDSNTPNPPIQARPAPVYVGSSTELMELQLGKAADAPLC
                     MTCGTKMRPAGSCYVCEGCGSTSGCS"
     gene            complement(3547..4035)
                     /gene="nrdR"
                     /locus_tag="VF788_17630"
     CDS             complement(3547..4035)
                     /gene="nrdR"
                     /locus_tag="VF788_17630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019815267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HEX8935957.1"
                     /translation="MRCPFCRHSDSRVVDSREVVDRQAIRRRRSCPECGRRFTTVEEL
                     LLAVVKRSGVTEAFSREKVIRGVRRACQGRPVEEDALQQLAHRVEESIRSLGSAEIPS
                     QEVGLAILGPLRDLDEVAYLRFASVYRSFSSIEDFEKEIRDLRELPGHRSRRREEEPD
                     GT"
     gene            complement(4270..4860)
                     /locus_tag="VF788_17635"
     CDS             complement(4270..4860)
                     /locus_tag="VF788_17635"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020633774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEX8935958.1"
                     /translation="MRLIARLVAAAVVASTLLSVAACDRPVGAKSPSEPLLALVDLAA
                     QRVQVADTVAASKWGTDSAITDPVREQAVLTSATMKSAQLGIDPAISARVFTDQIEAN
                     KAVQYALYSRWSAHPDQAPTVRPDLARLRPILDRITDELLAQLKLTQALRADRACGGQ
                     LASARQHVEQARGFDRVHEDALERAVASLCRPPRNG"
     gene            complement(5043..5567)
                     /locus_tag="VF788_17640"
     CDS             complement(5043..5567)
                     /locus_tag="VF788_17640"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEX8935959.1"
                     /translation="MTASAQLGNRPVAINGAAGGEHVLSRTTKQVRAVVLPCPLPAPP
                     APAPPVAPVVRRLHVTSPAQRRVQTSAARGTEAMHPPALRSVRAGRLVVTVMVTMIVV
                     GGLSWLGQTRDPGLPAHTAVVRVGAGETVWDVAARVAPQSDQGAVVERIRQLNGLAGS
                     AVNPGQQLQVPAGR"
     gene            5870..6544
                     /gene="lexA"
                     /locus_tag="VF788_17645"
     CDS             5870..6544
                     /gene="lexA"
                     /locus_tag="VF788_17645"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEX8935960.1"
                     /translation="MHTFPDLEDGTGEGLTPRQRRVLEVIREWVERLGYPPSVREIGE
                     AVGLTSTSSVAHQLRALERKGYLRRDPNRPRAVGVRPADISPDTAEETVNGEPARPRP
                     IFVPVVGRIAAGGPVLAEQVIEDVFPLPKEIVGEGSLFLLRVTGDSMIEAAITDGDWV
                     VVRQQPNAENGDIVAAMIDGEATVKTFKRRDGHIWLLPHNPAYEPIPGDEATVLGRVV
                     AVLRRL"
     gene            complement(6566..7993)
                     /gene="hflX"
                     /locus_tag="VF788_17650"
     CDS             complement(6566..7993)
                     /gene="hflX"
                     /locus_tag="VF788_17650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005465705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX8935961.1"
                     /translation="MTTSPSFPPHGPAPTSRGELDLEERTALRRVPGLSTELAEVTEV
                     EYRQLRLERVVLVGVWTDGSAAEADASLAELARLAETAGSQVLDAIVQRRERPDPATY
                     IGSGKVLELREIVLSTTADTVICDGELTPGQLRQLEAKLKVKVIDRTALILDIFAQHA
                     RSREGKAQVELAQLSYFLPRLRGWGESLSRQAGGAGGGASGGVGTRGPGETKLETDRR
                     RIHRRLAKLRREIAAMRTIRDTKRGRRRANEVPTVAIVGYTNAGKSSLLNAITGAGVL
                     VQDALFATLDPTTRRATTPQGQEYTLTDTVGFVRHLPHQLVEAFRSTLEETADADLLL
                     HVVDGAERMPELQIEAVREVLGEITSGHEAPMPRELVVVNKIDEAEDFALSRLRCLLP
                     EASFVSAHTGAGIGGLLQRIADALPQPQVEVDALLPWSQGALVARVHAEGEMLATDHT
                     EDGTRLRARVRPNLAGALAEYLVKT"
     gene            complement(8118..8951)
                     /gene="dapF"
                     /locus_tag="VF788_17655"
     CDS             complement(8118..8951)
                     /gene="dapF"
                     /locus_tag="VF788_17655"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEX8935962.1"
                     /translation="MTPVRFVKGHGTENDFVLLPDPTGTLELTPSRVRALCDRHRGLG
                     ADGVLRVIPGALVPDAPPETPPDDWFMDYRNADGSVAELCGNGVRVFARYLGDAGLVA
                     AAEFRVGSRSGPRQVRRNKDGTVTVEMGQVRCNGTATVTVEGAAFTGLVVDVGNPHLA
                     CLIDLPVEHLDLILPPGHDPGNFPHGVNVEFINVLAAGKLRMRVHERGVGETRSCGTG
                     AVAALAGALQVQERTTGEADVLVPGGRLHVAIGGDGSTLTGPAVLVASGRLALDWWLS
                     H"
     gene            complement(8948..>9133)
                     /locus_tag="VF788_17660"
     CDS             complement(8948..>9133)
                     /locus_tag="VF788_17660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020495120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEX8935963.1"
                     /translation="YAQVLRMLDGTLTEREARGETARATRRFARRQRSWFRRDPRIHW
                     LSSPDERAVLTAVRSTV"
BASE COUNT         1635 a         3044 c         2806 g         1648 t
ORIGIN      
        1 gcattcgtct actttttcgc ccaactttat ccgttttccc taatcgcgga accaagtagc
       61 tggactgccg cggccgctgg gggctgcgtc ctgctgcgcc gcatagcgtt gcagcgcgcc
      121 gggggcctgc cgcgcatccg caacagactc atcgacgacg tagccctggg ccgattgatg
      181 aagcggtctg gggcacggat atggctgggc ttcaccaaca acccgcccga ggtccgaagt
      241 gttcggccct gccctcacct cgccgacctc tggaggatgg tcacccgtac cgcatatacc
      301 caactgcgca catcgccggt actgctcgct ggcacactcg cgggcctggg gcttctctac
      361 gccgtcccgc ctgtcgccgg gctcaccgga ctcgcccggc gacaggcggt ccctgctgtg
      421 gccgggctcg gcgcgtgggt cgcgacgact atcacccagg cacccgtgtt gcgtctttac
      481 ggtctctcac cgctgcgcgg gctagcgcta ccagccgtcg cgacattgta tgccgccatg
      541 acgctggact cagcccgccg ccacgcgacc ggctgtggcg gcgtctggaa ggatcgggac
      601 gtaatcccaa actcgggtga tcagctgcag ccgctggtcg atccacatcc ctcgcagacg
      661 tagcaggatc cggccggtcg catctttgtc ccgcacgtca tgcacagcgg cgcgtcagca
      721 gccttgccca gttgcaattc catgagctcg gtagaactac ccacgtaaac cggcgccgga
      781 cgggcttgta tcggcgggtt tggagtgttc gagtccactg aggtgcgcaa cgactcgacg
      841 tcgacctccc tgtccgtgta ggcaccataa tcggcagata cctgcatggt gcgctcctct
      901 gcggacagaa tgcccagttg gtcgcgcttg tccttgggca aatgatccag agcgattcga
      961 cggaataggt agtccaccac actggtcgcc atccgaacgt ccgggtcgtc ggtcatcccg
     1021 gccggctcga atcgcatgtt cacgaatttc gagacataag tctccaaggg tacaccgtac
     1081 tgcagtgcta tcgagatcgc catcgaaaac gcatccatca caccggccag cgtggaaccc
     1141 tgcttggaca tcttgacgaa aatctcgccg agcccatcat cgggataaga cccggccgtc
     1201 aggtaaccct cagcgccgcc gacggtgaag gacaccgtct cactgggccg cttcttgggc
     1261 agtcgcttcc gtacgggcct ggcttcgacc accaccttat ccgctgcagc agtgctggac
     1321 tttccggtgg acagtggttg gcccaccttg cagttatccc gatagatcgc cagcgccttg
     1381 agccccatct tccatgcctg aaggtagatc tcttcaatgt cggcgactac cgccgtctcc
     1441 ggcatgttga cggtcttgct gatagccccc gagatgaatg gctgggtagc cgccatcatt
     1501 cggacgtgac ccatcggtga aatggctcgc tcgcccatcg cgcaatcaaa cacctcgtag
     1561 tgttcagggc gcagtcccgg ggcattgatc acatgaccat gctctgagat atactcgata
     1621 accgcctcgc tctgttcctt ctgatagcct aacgcggcca gcgctttggg cactgtctgg
     1681 ttcacaatct gcatggagcc gccgccgacc agcttcttga acttgacgag tgagaagtcc
     1741 ggttcgatac ccgtggtgtc gcagtccatc atgaaaccga tcgtgccggt tggtgccaag
     1801 acactagctt gagcgttcct ccacccattg ttctcaccga tccgcaggcc gtcctgccag
     1861 gccttggtcg ccgctttctg gacggcgcga tcattgtgat cgtacgtgcg gatcaaatcg
     1921 ttggcggcgg cgtgcttgcg cataacccgc tggtgtggtt cggcgttgcg cgcataaccc
     1981 tcgtacggtc cgacgactcc ggcgagctca gcagatcgtt tgtaagcagt accggtcatc
     2041 accgaggtga tcgccgcggc cagcgcgcgg ccgccgtcgg agtcgtaggc gtgcccggtg
     2101 gccatcagca acgcgccgag gttggcatag ccgataccga gctgccgaaa cgccctggta
     2161 gtgtctccga tggtttttgt cgggaaatcg gcaaaacaaa tcgagatgtc catcgcggtg
     2221 ataaccagct ccaccgtctt gacgaacagc tcggcatcaa acgtgagatc ctcgcggagg
     2281 aacttcatca gattaattga agcaaggttg cagcttgagt tatcgaggtg caagtactca
     2341 ctgcagggat tagacgccgt gatacgcccg gactccggac aggtgtgcca gtcattgatg
     2401 gtgccatcgt actgcaggcc cggatcagca cattcccagg cagccttggt gatatcgcgg
     2461 aagagttccc tggcccgcac cgtctcgatg atctcaccag tggttcgggc acgcagcccg
     2521 aactcgccat cgatctccac tgcccgcatg aactcatccg aaacacggac ggagttgttg
     2581 gcgttctggt actgcaccga ggtgatgtcc ttgccaccga ggtccatgtc gaatccggca
     2641 tcacggagca cacggatctt gcgctcttcg gacgctttgg tctgcacgaa ctcggagata
     2701 tcgggatggt cgacgtcgag gacaaccatc ttggctgcac ggcgagtcgc accacctgat
     2761 ttgatggtac ccgccgaggc gtccgctccg cgcataaaac ttactggccc ggaggcggtg
     2821 ccgccggagg agagcagttc cttcgaagaa cgaatacggg acagattcag acctgcgccc
     2881 gaacctccct tgaaaattag accctcttcc cggtaccagt tgagaatcga gtccatggtg
     2941 tcatcgacag acaagatgaa gcacgctgac acttgttgcg gagagctggt gccgacgttg
     3001 aaccagaccg gggaattaaa gctgaacacc tgatgcagca gcatccaggt cagctcatgg
     3061 gagaagatct ccttatcagt gtcggtagcg aagtatccgt gctgcacacc ggcggcggtg
     3121 taggtcgtca ccactcggtc gatgagctgg cggaggctcg cctcacgctg ctcgctgccc
     3181 accgcgccgc ggaagtactt acttgtcacg atattaaccg cgttgaccga ccagaagtcg
     3241 gggaactcga cgccgcgttg ttcgaagttg accgtgccgt ctcgccagtt ggtcatcacc
     3301 acgtcccggc gctgccacgt cacctcgtca tagggatgcc ggtgctcggt ggtgtagacc
     3361 cgctccagcc gcagcgcgcg cttgggctgc gcggcaggcg aagatcccac agcgccagcc
     3421 ggagtcccta cggtttcggt catccctcgt ccctctctat cgcggtgtgc atactccagg
     3481 gtccgggatc tccccgtccg gagcggtcgg atgcttcgtg gtgctgtcgt aggcgactac
     3541 gagtcgtcag gttccgtccg gctcctcctc gcggcgtcgc gaccggtggc ctggcagctc
     3601 acgcaggtcg cggatttcct tctcgaagtc ctcgatcgag gagaacgacc ggtatacgct
     3661 ggcgaaacgc aggtacgcca cctcgtcgag gtcccgtagc gggccgagga tggccaaccc
     3721 gacttcctgg ctgggtatct ccgcgctgcc caacgacctg atgctctctt cgacgcgatg
     3781 cgcaagctgt tgcagcgcgt cctcctcaac aggtcgcccc tggcacgccc gacgtactcc
     3841 gcggatcacc ttctcgcggc tgaacgcctc ggttacccct gagcgcttca ccacggctag
     3901 cagcaactcc tccaccgtgg tgaatcgccg gccgcactcc gggcacgatc ggcgtcgacg
     3961 aatcgcctga cgatccacaa cttcgcggga gtcgacgaca cgcgaatcgg agtgccggca
     4021 gaacggacag cgcatgctcc tcacccctgc ctctacatca tggcaccacg accggagttc
     4081 tcggacgacc tgcggcaacg atgaccaact cgcgacactc aagccgtgat actcaaccgg
     4141 tgggagaacc acatccctgt aactactata tgtgggggta attgggtctg tcgagccgcc
     4201 acaacgagca acgtccgtcg cgatcggctg ccgaccctac ggcggatcca gcaaccgccg
     4261 gcacctgccc tatccgtttc gcggtggtcg gcagagggag gcaactgctc gctccagcgc
     4321 atcttcgtga acccggtcga acccacgcgc ctgttcgacg tgctgccggg cgctggccag
     4381 ctgtccgcca caggctcgat cggctcgcag ggcttgggtg agtttcagct gggccagcag
     4441 ctcgtcggtg atgcggtcca agatcgggcg taggcgcgct agatccggcc gcacggtagg
     4501 tgcttggtct gggtgggcac tccaccggga gtacagcgcg tactgaactg ccttgttcgc
     4561 ctcgatctga tcggtgaaca cccgagccga gattgccgga tcgataccaa gttgcgccga
     4621 cttcatggtt gcgctcgtca gaacggcctg ttcccggacc gggtctgtga tcgcgctatc
     4681 ggtgccccat ttcgacgcag caacggtgtc ggccacctgc acccgctggg cagcgagatc
     4741 aactaaagcc agcagcggct cgctcggaga cttcgctccc acgggccggt cacaggcagc
     4801 cacactcagg agcgtgctgg ccacaacggc ggcagccacc agacgggcga tcagacgcat
     4861 agccttctcc ggtgatcagc gtccccgccg agagcgaaca ccacggcacc aggacgacga
     4921 cgaggaccca aagcacactc cagaggtaag gatgccagcg caaagttcgc aattcagctg
     4981 agcagacgtg ctcgatgacc tgcgcaatcg atgtcgtgaa gtggagttgg gtgcacgccg
     5041 cactagcgtc cggcaggcac ctgtaactgc tggccagggt taaccgcgga gcccgccaga
     5101 ccattcagtt gtcgaattcg ctccaccacc gcgccctggt cggactgggg agccaccctg
     5161 gctgccacat cccacacggt ctctcccgcg cctactcgga ccaccgccgt gtgtgcggga
     5221 agccccggat ccctggtctg accgagccaa ctcagaccgc cgaccacaat catcgtcacc
     5281 atgacggtca caaccaggcg ccccgcccgg accgaccgca aggcaggcgg atgcatagcc
     5341 tccgtcccgc gcgccgcgga ggtctgcacc cgccgctgcg ccggagatgt cacgtgaagc
     5401 cgccggacca caggagccac cggcggcgcg ggcgctgggg gcgccgggag cggacaggga
     5461 agcaccaccg cccggacctg cttggtagtc ctggatagga cgtgttcacc gccggccgct
     5521 ccattgatag cgacaggccg attgcccaac tgtgccgatg ccgtcatcga gactcctcag
     5581 tgcgagtatc gtcgaacgcg agttcgatcg aactgttgtg cggtgtctat cacgacggtc
     5641 tgacagagac ggcgacccca cggcgtgttg ttcgaacaga tgtttgatct ttggtgaaac
     5701 ggtggttagc gtctgcgtca cggcgggccg ggtgggtccg acagtgactc gaggaggcac
     5761 ggtgggacga gaacgaagtg gtgagccgac ggtggccggt tccggcggct cggaccagaa
     5821 cccgagcgac caggggccaa gcgaacacag cctcggtcat accgcacaga tgcacacctt
     5881 ccccgatctc gaagatggca ccggtgaggg cctcaccccc cgtcagcgac gggttctcga
     5941 ggtgatccgg gagtgggtgg aacggttggg ctacccgccg agcgtgcgag aaatcggaga
     6001 agcggtcggc ctcacctcca cctcgtcggt cgcgcaccag ctgcgcgctc tggagcgcaa
     6061 gggatacctc cgccgcgacc ctaaccgtcc ccgggcggtc ggtgtccgac cggccgacat
     6121 ttcgcccgac accgcggaag agaccgtgaa cggcgagccc gcccgtcccc gaccgatctt
     6181 cgttccggta gtcggccgga tcgccgctgg tggtccggtg ctcgccgagc aagtgatcga
     6241 ggacgtcttc ccgctgccga aagagatcgt cggtgagggc tcgctgttct tgttgcgagt
     6301 cacgggtgat tccatgatcg aagcggcgat caccgacggg gactgggtgg tcgtgcgcca
     6361 gcagccgaac gccgagaatg gggatatcgt cgccgccatg atcgacggcg aggcgaccgt
     6421 gaagaccttc aaacgacgtg atgggcatat ctggttgctc ccgcacaacc ctgcctatga
     6481 gccgattcca ggagacgaag caaccgtgct cggccgggtg gtggcggtgc tgcggcgact
     6541 gtaagtgctc agcaccttcg ggctgtcagg tcttaaccag gtattcggct agtgccccgg
     6601 cgagattggg ccgcacccgc gcgcgcagcc gggtgccgtc ttcggtgtgg tcggtagcca
     6661 gcatctcgcc ctcggcgtgt actcgagcga ccagcgcgcc ttgagaccac ggcagtaatg
     6721 cgtccacctc aacctgcggt tgtggcaacg cgtcggcgat cctctggagt aggccaccga
     6781 tacctgcccc ggtgtgcgca gagacgaacg acgcttcagg cagcaggcag cgcagccgcg
     6841 acagcgcgaa gtcctcggcc tcgtcaatct tgttcaccac caccagttca cggggcatcg
     6901 gcgcctcatg tccgctggtg atctcgccga gtacctcgcg caccgcctct atctgcagct
     6961 caggcatccg ctcagcgccg tccacaacgt gtagcaggag gtcagcgtcg gccgtctcct
     7021 ccagggtgga gcggaacgcc tccaccagct ggtggggcag gtggcggacg aaaccgacgg
     7081 tgtcggtcag cgtgtactcc tgcccttgcg gcgtggtggc ccgacgggtg gtggggtcca
     7141 aggtggcgaa caaggcgtcc tgcaccagca cacctgcgcc cgtgatcgcg ttgagcaggc
     7201 tcgacttacc ggcgttggtg tagccgacga tggccaccgt gggcacctcg ttcgcgcgcc
     7261 tgcgtccccg cttggtgtcg cggatcgtgc gcattgcggc gatctcccgg cgcagcttgg
     7321 cgagccgccg gtggatgcgc cgccggtcgg tctccagctt ggtctcacca gggccgcggg
     7381 taccaacccc accactggct ccacccccgg caccgccggc ctgccgggaa agcgactcgc
     7441 cccaaccacg caaccgcggc aggaaatagc tcagctgagc cagctcgacc tgcgccttgc
     7501 cctccctgga acgagcgtgc tgggcgaaga tatccaagat caacgcggtt cgatcgatga
     7561 ccttgacctt gagcttcgcc tctagctgcc gcagttggcc cggggtgagc tcaccgtcgc
     7621 agatgaccgt gtccgccgtg gtgctgagga ctatctcgcg cagctcgagc accttgcccg
     7681 agccgatgta ggttgccggg tcggggcgct cgcggcgctg gacgatcgca tcgagcacct
     7741 gcgacccagc agtctcagca aggcgggcca gttcagccag cgatgcatcg gcctcggccg
     7801 cggaaccatc ggtccatact ccgacgagga ccacgcgctc caggcgtagc tgccggtatt
     7861 caacctcggt gacctcagcg agttcggtgg acaggcccgg tacgcgccgc agggcggtgc
     7921 gctcctcaag atccagctcg ccccgggagg taggggcagg accatggggc ggaaagcttg
     7981 gtgaggttgt catacgcctc tcatcgtgac atgtctggca gaccacgact aacgaattcc
     8041 cggtctggat gcagactgcg gcgatctggg taccactgag cgcagtctgc atccagactg
     8101 cgctgtgtgc acaggcatca gtgcgataac caccagtcaa gagccaacct gccgctggcg
     8161 accagcaccg cgggcccggt cagcgtgctg ccgtccccac cgatcgccac gtgcagtcga
     8221 cctccaggca ccagcacatc agcctcgccc gtggttcgct cctgcacttg tagcgctccg
     8281 gctagcgcag ctaccgctcc ggtaccacag gaacgggtct ctcccacccc tcgctcatgc
     8341 acccgcatcc gcagctttcc ggctgcgagc acgttaatga attcgacgtt gacgccatgc
     8401 ggaaaattcc cggggtcgtg tcccggcggc aggatgaggt cgaggtgttc caccggcagg
     8461 tcgatcaagc aagccaggtg cggattgccg acatcgacta cgaggccggt gaacgccgcg
     8521 ccctcgacgg tcaccgtggc agtgccgttg caccgaacct gccccatctc gacggtcacc
     8581 gtgccgtcct tgttgcgccg tacctggcgt ggaccggacc tgctgccgac tcggaactca
     8641 gcagcggcaa ccagcccggc gtcgcccagg tatcgagcga atacccgtac cccattgccg
     8701 cacaactctg cgacagaacc gtcggcattg cggtagtcca tgaaccagtc gtcgggtggg
     8761 gtttccggcg gtgcgtcggg caccagcgca ccgggaatca cccgcaacac cccatcagct
     8821 cccagccccc ggtgccgatc gcatagtgca cgcactcgag acggtgtgag ctccaacgtg
     8881 ccggtgggat cagggagcag gacgaagtcg ttctccgtcc cgtgtccctt gacgaagcgc
     8941 accggcgtca cacggttgat cgtacggcgg tgagcacagc gcgctcgtcc ggcgacgaca
     9001 gccagtggat ccgcgggtcg cgccggaacc acgaccgctg ccgccgcgcg aagcgccgcg
     9061 tcgcccgcgc cgtctccccg cgcgcctccc tctccgtcag cgtcccatcc agcatccgca
     9121 ggacctgcgc gta
//
LOCUS       DASVXZ010000832         3481 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_595197, whole genome shotgun sequence.
ACCESSION   DASVXZ010000832 DASVXZ010000000
VERSION     DASVXZ010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3481
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595197"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VF788_17665"
     CDS             <1..221
                     /locus_tag="VF788_17665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935964.1"
                     /translation="GFALLRSKGETSARQRRTESFRGRWLIATRPPTTSDRPAQGVRA
                     GDPDEGAVVYDSDKRGPRRRRAADRGEC"
     gene            554..946
                     /locus_tag="VF788_17670"
     CDS             554..946
                     /locus_tag="VF788_17670"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8935965.1"
                     /translation="MALLPSTLGRVGPLSSDALELQVTEHGTDARVVTVGGEIDALTA
                     PELGALLTAHLTAASLVVVDLERVRFLGSAGLSVLFAVNELATRENCCLWLVFHHRGM
                     VNRALEVTGLRERYNVAETVSAALINSL"
     gene            1184..1471
                     /locus_tag="VF788_17675"
     CDS             1184..1471
                     /locus_tag="VF788_17675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935966.1"
                     /translation="MVPHAPLAHHLRRRQFGTEIKDAIERTTAGSGITVDIAARGDHF
                     HDDDPDNIVNRLTAGSTNGNGSIQIEQSLQAREEYGVAIADAVADVYRPRL"
     gene            complement(1701..>3481)
                     /locus_tag="VF788_17680"
     CDS             complement(1701..>3481)
                     /locus_tag="VF788_17680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003097791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxidase family protein"
                     /protein_id="HEX8935967.1"
                     /translation="AFAKLAVAIDRRRRWEQFPTPVSLALLMGIRDSLREHNLHDTND
                     AASRPQLDPQPAPRWLTARTVEGTYNDLSAPAMGAAGTRFGRNVPARRTRPERGERLM
                     TPNPRVVSTALLARGPQMIPATTLNVLAAAWLQFQTRDWFSHGTDPKHPFQFPRPEGD
                     PWPDDPILLPRTPRDPHADDDPPATFVNTETHWWDASQIYGSTMEFHRAIRRPQLGPG
                     QVAIGPDGLVDLDPALLGSSGGLDGWWVGLELLHTLFMREHNAVCTMLSTAYPAWSDE
                     QIFDRARLIVTALLAKIHTVEWTTAILAHPALRIGMRANWFGIAEERVRNLVGRLGDS
                     EIISGIPGSPTDHHSAPYSITEEFVAVYRMHPLVPDDFLIRTIDDPQRRDELAFLDLA
                     GPRSRDVLKRYGATDLFYSFGTAHPGAVTLHNHPRFMQQLRRDDGMVVDLAAIDILRS
                     RERGVPRYNEFRRLLRLPEARSFDDLTQNSQAAAELAAVYDSIEEVDLTVGLHAEPLP
                     PGFGFGDTAFRIFILMASRRLKSDRFFTSNFTPKTYTPEGIRWIADNDMSSVLVRHYP
                     DLGPALLTVQNAFAPWPLLPDPAIDH"
BASE COUNT          591 a         1034 c         1261 g          595 t
ORIGIN      
        1 tgggcttcgc gctgcttcgg tcgaaaggtg aaacctcagc acggcagaga aggaccgagt
       61 cgttccgggg aaggtggctg atcgccacgc ggccgccgac gactagtgac cgcccagctc
      121 agggcgttcg cgctggggat cccgacgaag gcgccgtggt gtacgactcc gacaagcgag
      181 gtccccgccg ccgacgtgcc gctgaccggg gcgagtgcta gctgcggtga ctcaccacgg
      241 ccagctggag gcgaggttgt gcaccggcac ggccaggtcg ggcgggtagg cgctccttca
      301 ggtaatcgat caccgcagcg gtgtcttgat ctggaggccg gtactgggtc agctgtctgt
      361 gggggtgggt gagcagccct tgtagtggtt tgagtcattg cccggtgggc ggccgaaggg
      421 tttagttctg agtgggttgg gtaactgcgg gcaaccgcgc ggtcacggat cggtgttcga
      481 aagctggcgc caggccgtcc ggaagcatcg gcgtcccccg cgggcgccac cacggcaggg
      541 aaaggagctg gtgatggcgt tattaccgag cacgctgggc agggtaggac cgttgtcctc
      601 cgacgccttg gagctgcagg tgaccgagca cggtacggac gctcgggtgg tcaccgtagg
      661 aggtgagatt gatgctctga ccgctccgga actgggtgcg ttgttgactg cccacctgac
      721 cgctgcctca ttggtggtgg tggaccttga gcgggtgcgg ttcttggggt ctgctgggtt
      781 gtctgtgctg tttgcggtga atgaactcgc gaccagggaa aactgttgcc tgtggttggt
      841 gtttcaccac cggggaatgg tcaatcgagc ccttgaggta accggtctgc gtgagcggta
      901 caatgtcgct gagaccgtgt cggccgcgtt gattaactca ctttgacgat ggtcgcgatg
      961 gtcaattggc gtttgatgct gtgatcgact cgcaggtgcc gaatccgacc ttgtcggaaa
     1021 gggaaaagca gagttcatcg agcggcttgc ggacaatgcc cggcagagcc ggctcattgt
     1081 tatggcaccc cacggacgag atatcgagcg acataccgac gagcgcaact gacccctaag
     1141 gcggcgacct catggtgacg caaaggctgg aaccaccacg gaggtggtgc ctcacgcgcc
     1201 gctggcacat cacctgcgcc gacgtcaatt tggaacagaa attaaggacg ccatcgaacg
     1261 caccacggcc ggctcgggga tcacggtcga tatcgccgcg cggggcgatc acttccacga
     1321 cgacgacccg gacaatatcg tgaaccggct cactgccggc agcaccaacg gcaacggcag
     1381 catccagatc gagcagtccc tccaggcccg cgaagagtac ggggtcgcca tcgccgatgc
     1441 ggttgccgac gtgtaccgcc cgagactgtg acactcgccg gcaccccggc aattccgatc
     1501 tgcgagcgtt gatcgcggtt gcggtgcggc ctatctgcgc atgccttaca caccaccaga
     1561 cgatcagccg cctgccgaaa caccacggcc gaagcgcaca ccgctacgaa caacagcgag
     1621 gagctgcaag tccgactaac ggtcagcgaa tactagctgt ggacctaagg ccagacgcag
     1681 cagaggtggt ggtgattgga ttagtggtcg atcgccgggt cgggcaggag gggccacggc
     1741 gcgaatgcgt tctgcaccgt gagcagtgcc ggcccaaggt cggggtagtg gcggacgagc
     1801 actgaggaca tgtcgttgtc ggcgatccag cggatgccct ccggcgtgta ggtcttcggg
     1861 gtgaagttgc tggtgaagaa gcgatcactc ttcagccggc gggatgccat taggatgaag
     1921 atccggaaag cggtgtcgcc gaagccaaac ccgggcggca ggggttccgc gtgcagcccg
     1981 acggtcagat cgacctcctc gatggagtcg tacaccgcgg cgagctccgc ggccgcctgc
     2041 gagttctggg tgaggtcgtc gaaggaacgg gcctcgggga gccgcagcag tcggcggaac
     2101 tcgttgtagc ggggtactcc ccgctcccgg gaccgcagga tgtcgatggc ggcgaggtcc
     2161 accaccatgc cgtcgtcgcg gcgaagttgc tgcatgaacc gcgggtggtt gtgcagtgtg
     2221 acggccccgg ggtgggccgt gccgaaggaa taaaacaggt cggtggcgcc gtagcgcttg
     2281 agcacgtccc gcgaccgcgg gccggcgaga tcgagaaatg ccagttcgtc gcggcgctgc
     2341 ggatcgtcga tcgtgcggat gaggaagtcg tcgggcacca gcgggtgcat ccggtacacc
     2401 gcgacgaact cctcggtgat ggagtacggc gcggagtggt gatccgttgg cgaaccaggg
     2461 attccgctga tgatctcgct gtcgccgagc cgcccgacga ggttccggac gcgttcctcg
     2521 gcgatcccga accagttcgc ccgcattccg atccggagcg cgggatgagc gagaatcgct
     2581 gtcgtccatt ccacagtgtg gatcttggcg agcagggcgg tcacgatcag ccgggccctg
     2641 tcgaagatct gttcgtccga ccacgcgggg taagccgtgc tgagcatggt gcatacggcg
     2701 ttgtgttcgc gcatgaacag ggtgtgcagc agctccaggc cgacccacca gccgtccaac
     2761 ccgcctgagc tgccgagcag cgccgggtcg aggtccacca ggccgtcggg gccgatggct
     2821 acctgcccgg ggcccagctg cggtcggcgg atggcgcggt ggaactccat ggtgctgccg
     2881 taaatctggg aggcgtccca ccaatgggtc tcggtgttga cgaacgtcgc cggcgggtcg
     2941 tcgtcggcgt gcgggtcgcg gggggtacgc ggcagcagga tggggtcgtc gggccacggg
     3001 tcgccctcag gtcgggggaa ctggaagggg tgcttgggat ccgtgccatg gctaaaccag
     3061 tcccgggtct ggaactgcaa ccacgctgcc gcgagcacgt tcagcgtcgt ggcggggatc
     3121 atctgcgggc cgcgggcgag cagcgccgtg ctcaccacgc gcgggttcgg tgtcatcaac
     3181 cgctcgccgc gctccgggcg cgtacggcgc gccgggacgt tgcgcccgaa ccgcgttccc
     3241 gccgccccca tcgccggggc ggacaggtcg ttgtaggtgc cctcgacggt gcgggcggtc
     3301 agccaccggg gcgctggctg cggatcgagc tgtggccggg acgccgcgtc gttggtgtcg
     3361 tgcaggttgt gctcgcgcag cgagtcgcgg atacccatca gcagggccag ggacaccggt
     3421 gtcgggaact gctcccagcg gcggcgccga tcgattgcga cggccagctt ggcgaacgcc
     3481 c
//
LOCUS       DASVXZ010000833         7343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1671623, whole genome shotgun sequence.
ACCESSION   DASVXZ010000833 DASVXZ010000000
VERSION     DASVXZ010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7343
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1671623"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VF788_17685"
     CDS             <1..185
                     /locus_tag="VF788_17685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935968.1"
                     /translation="TVRQIVSWPPPSRRRLELVTPQPDDEHRPRIPRETENQPSTPGV
                     PHPDVVMNARDFGTCL"
     gene            628..1491
                     /locus_tag="VF788_17690"
     CDS             628..1491
                     /locus_tag="VF788_17690"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8935969.1"
                     /translation="MTAVQDPTVQRRRLRLELRRARDAAQLRQAEVAHAMDWSPSKLI
                     RIERGDVGVSTNDLRALLTHYGVEDDKRVNDLLELARSARGPSYYDQFADLLKPGFKE
                     YLAYEASASVIRQYDTVLVSGLLQTEEYGRAILEHMFGFSRDRVDKAWAVRRHRQEAV
                     DRASPPDMIFVQDEAALRRHVGGGRVMSKQLKQMQELAAEPNITIQIIPFDRGAHSGM
                     AGNFILLEFSDPSLDDLIHREDADSITIRDDIELIGQYVDRFEKLQELALSPKESIDF
                     LNVLTREMSNS"
     gene            3125..6166
                     /locus_tag="VF788_17695"
     CDS             3125..6166
                     /locus_tag="VF788_17695"
                     /inference="COORDINATES: protein motif:HMM:NF016484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052636 - arabinosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0071766 - Actinobacterium-type cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arabinosyltransferase domain-containing protein"
                     /protein_id="HEX8935970.1"
                     /translation="MLVALVLPFAPVATEQTTVTWPVPGQPTVSSAALFAPYRPTELT
                     VIVPCSALRAAAARGGAFTVFATGPSGDGLVLRTRAGTAQLLLGNRLVSSTPVIGTTT
                     DCRTQLHAGPAGAVATIGTTRRIDLAGEPVPEVFAFRTDLDTREAAGMMVTARTVNPF
                     DTSPSGVKKLLIGVQLLAVLVALGLLSIMPNWQRLKDYRPRWGAIMVDVGVLGVLGVW
                     AIIGPLTDDDGFATTIARNAALTGNVGNYYRWWNAAETPFALSEQLLAPLTQVSLAPL
                     WLRVPSTVLGMVTWFVVSRGVLGAALPAVAHTVRIRLLAAVFLLAAWLPFNLGVRPEP
                     YVALGITGVLALLWRARRVAALGWAALVAGLTIPISPSGILIAAPVVVFAPRIVAILG
                     SSARGRVEVLARVLLLCCIGAVGITAIFADQTWGGLVTATRWHDFFGPSLPWYHEPDR
                     YRYLLGLDQDGSATKRIPVLLTLAVLPVVAVLLARQSKAAPELNQRRAEGSAARLTGV
                     VIIALALLWLTPSKWSHHFGALAGLLASFLVVAIALIMQRKQSPIGYPVTAWIGVSGA
                     ALVAGAAALAFAGPNAWWQPAVYNVPWATGPVRPLGLPLDSPLLWIGALALGYAVLAA
                     LRPVSGDTSQGSYRHSRTLVAAPGVLAVAVASTAVAVVLGSFLAAPVRQPAGSLALAN
                     LHSLAGEPSCGLADSIQVLPDGAVLAPAVSSVSFYPGALYPAALYPGLDLPAPDSPGR
                     LAGFTALGGFDPSSPPPNPPSTGMSAQLWGSLVGGPRSTGTLTSPWFWLPPLGPASGV
                     AVSVSGRTDRGNTLALEFGRAVSTGVVTLGQRAPLDRVKLDQDHLQGPPDYRPWRSIG
                     LDAAQVPGGADRVRIRAVDATTDPNGWLAVTGPRLRSVVGLTAFLAGRGPVLVSWPQA
                     FLFPCVQNIAVVTGGLATTPGAVIEAPRIHGRLSAVTTAQDQGGVFAAIRPFSSLYEV
                     PTRLAGRPDLDWGALHVAGDPAFRDAYLSRHGDISGLDGGR"
     gene            6211..>7343
                     /locus_tag="VF788_17700"
     CDS             6211..>7343
                     /locus_tag="VF788_17700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8935971.1"
                     /translation="MSEIQVRTLSGWGRTAPSTARVLIDPSVESIQRAVRGAGDRGVI
                     ARGLGRSYGDPAQNAGGLVIDMTGLARIHSLDAGSGLAVVDAGISLDALMRAALPLGL
                     WVPVLPGTRQVTVGGAIAADIHGKNHHSAGSFGNHVRSLDLVTADGSIVTLTPDGDPI
                     AGSAGSELFWATVGGMGLTGIIVRATIALTPVESAYFVVDTDRTGDLDELMVLLTDGS
                     DDRYDYSAAWFDAISTGSKLGRAVLTRGSLARRDELPPKLRRDPLTFDAPQLLTAPNV
                     FPNGLANRAVFGALSEAWYRKAPKRRRNEIQNLTSFYHPLDMIGEWNRAYGARGFLQY
                     QFVVPMSAQDTFRTIVEQIARSGHVSFLNVLKRFGEASRAPLS"
BASE COUNT         1214 a         2369 c         2397 g         1363 t
ORIGIN      
        1 gaactgttag gcagatcgtg agctggccac caccgtcacg acgccgactc gaactcgtca
       61 cgccgcagcc cgacgatgaa caccgcccac gcatcccgcg ggaaaccgag aaccagccct
      121 cgactccggg agttccgcac ccagatgtgg tcatgaacgc gagagacttc ggcacatgcc
      181 tgtgagccac tccggctgct cttccgccat cctgccgggc taggtggttg cagcattgcg
      241 accatgccgt tctcctcact cagcgctcgc ggcccccagg agtcgctccg aagccgttgc
      301 gtgggccatg ccagcacgtt aaggctggta caccaggcct cacctccctc gacgggagga
      361 ttccgggggt taaccagtgc gctcgggtag acgcgctgaa gctgctggag gacgggtagc
      421 cctctaagtg ggcgacaccg accgttccag gcgtttaagg tgaggccacc ttcatcaact
      481 gctatgaagc agagtgctag ttgcctaacg cgacgtgcgc tccgcgtgct agcgtactgc
      541 cagttagcat cttgtcacca catgaacgat aggaagcgca cggctagtga gctcgatgac
      601 agatagcgca gtgaagggga ctcgcggatg acggcagttc aagatccaac cgtgcagcgg
      661 cgccggctcc gcctggagct caggagagcg cgcgacgccg ctcagttgag acaggctgag
      721 gttgctcacg ccatggactg gtcaccgtcc aagctcatcc gcatcgagag aggggatgtc
      781 ggcgtctcga ccaacgatct gagagcgttg ctgacccact acggcgtcga ggatgacaaa
      841 cgggtcaatg acttgctgga gctcgccaga tcagctagag gtccctctta ttatgatcag
      901 ttcgccgatc tgctgaaacc aggtttcaag gaatatctgg catacgaagc gtcagcgtcc
      961 gtgatccgtc aatacgacac agtgctcgtg tcggggctac tccagaccga agagtatggt
     1021 cgtgcaattc ttgaacacat gtttggtttc agccgggatc gggttgacaa ggcatgggcg
     1081 gtccgtcggc accggcagga agcggtcgac cgtgcgagtc ctccagatat gatttttgtg
     1141 caagatgaag cggccctacg gcgtcatgtc gggggagggc gcgtaatgtc aaagcagctg
     1201 aaacagatgc aagaactggc agcagaaccg aatatcacga tccaaattat tccgtttgat
     1261 cgcggagctc attcaggaat ggccggcaat ttcattcttc tcgagttcag cgacccgagt
     1321 cttgatgatt tgatccaccg cgaagatgct gactctatca ctatccgtga cgacatcgaa
     1381 ttgattggcc agtacgtcga cagattcgag aaattacaag aactggcgtt atcacccaaa
     1441 gagagtatcg acttcctcaa tgtactgacc cgggaaatgt caaattctta accgcaaagg
     1501 aggttattcg gatgatgcgt ctggatgatg cccgattcca tcgattaaag gtgccggggc
     1561 cggtgctgca acaccgaccc cggcgatctc caatccattt cccaatgtcg tgtgaaccac
     1621 agcaaatgct tcaccagcac taggcttaga ttggagaggc tcttatgtcc agtttttggc
     1681 ttcacctttc cgagggtggc agcggcagta acggcgggta actccgtggc cacgcggagt
     1741 agcgtacccc gtcaatgacg ggcgctcggg tccggccccc cgggagccag acccgagttc
     1801 gcatacacgg tagccacccg acgccgtaca accgggagcg ggggttcagg gcggagttcg
     1861 gggagcttac gtgaatattg agcgatatgc gtcgctgacg cccatgcttc ccatcatctg
     1921 gtttctgacg tgtaggcgca tcacaccgac cactgtcagg atcatctagg cggccgccac
     1981 gcttcagggc atacttgcat acagacgccg caagatggtt gccgacgctg cctggcagca
     2041 cctcgaatcg tcgtgactcc atgcccggcc cctcacgact tggcgtgtgc ctggcttctc
     2101 tgatgacaga tttatgccct acaaaaccag cagttcggca tggagtcaac ggggtcttcg
     2161 gtcgcgtggt gagcgccgac gtcaccgtga aacggacttt gttcactgta agttgaccaa
     2221 cgtcgcgtag cggccggtca gcgtcgcgcc cgcactgctg gtgagacgta agtggcgtgc
     2281 gcggctggca gtagctcgga tgccactgcg ctgcgcagtg gccctgcgga cgatggttgg
     2341 cggttgcgag gccagcgtcc tcatatttac ttccggccac tggagcaacg cccatcctgc
     2401 ggtatcttgc agcctaccag taggcgcgga cggacggcga ctgagccatt gagggatcgc
     2461 ggcgttcaaa tccctgagcc actacgatgg tgtctccgct tcgggtttac ctccggtgag
     2521 tggacagcat ccaactggcc atggcggcaa ccggagcagc aggtcagtga gccgaatgtc
     2581 agggccgccc ggacatcctg tgctatcccg tggagcacca gcctgacccc tgtgaagcac
     2641 aatcggccga tcgcacgtgg atataagaat atgggtcgtc gggttatggt cgaaacagct
     2701 ggccgaattg accagccctc ctggagttag gtcgcagttt cggcagcgga agtcgcacat
     2761 cgtcacgtct caccgtctgg ctccggctac cggcttgcgt catcgtccac gactggcaga
     2821 gccttccgcg tcgctgacct ggctgacaga ctagaataat tcgagagcaa gcatagcgag
     2881 cttttgctta cgtagctcac aataactcga ctcgtcgcga cgtcacgcgt gtttcgctga
     2941 tgccgaacca aggtgcctgc cagaaccggc aggtgctaag gagtcaacaa cactccgaat
     3001 cgcggaatgt cataccctgt caaggtcacc tcgccgcgaa aggactctcg tactgtccgc
     3061 cgaatcccct gctgcccacc tgccggtcag catcgcactc gggctgctgg ccggcttgat
     3121 cggcgtgctg gtcgcgctgg tgttgccctt tgcgccagtg gccactgagc agaccacggt
     3181 gacctggccg gttcccggcc agccgacagt gtcgagtgcg gcgttgttcg cgccataccg
     3241 gcctacggag ttaaccgtga tcgtgccgtg ctcggcgctg cgcgccgccg ctgcgcgtgg
     3301 gggcgccttc accgtgttcg cgaccggccc atccggtgac gggctggtgc tgcggaccag
     3361 agccggaacg gctcagctgc ttctagggaa ccggctggtg agcagcacgc cagtgatcgg
     3421 caccaccaca gactgccgga cgcagctgca cgcggggccg gctggagcgg tggcgaccat
     3481 cgggaccacc cggagaatcg acctagccgg cgagccggtt cctgaagtct tcgcgttccg
     3541 tactgatctg gatacccggg aagcggcggg gatgatggtt accgcccgca ccgtcaaccc
     3601 gttcgacacc agccctagtg gcgtgaagaa gctactcatc ggcgtgcaac tgctcgcggt
     3661 actcgtcgcg ctcgggctgc tgagcattat gccgaattgg cagcgcctca aggattaccg
     3721 gccgcggtgg ggcgccatca tggtcgatgt cggcgtgctc ggggtgctgg gggtgtgggc
     3781 gatcatcggt ccgctgaccg atgacgacgg tttcgcgacg acaatcgccc gcaacgcggc
     3841 gctgaccgga aacgtcggca attattaccg ctggtggaac gccgcggaga ccccgtttgc
     3901 gttgagcgaa cagctgctcg cgccgctgac ccaagtgagc ctggcgccgc tgtggctgcg
     3961 ggtgcccagc accgttctgg gaatggtgac ctggttcgtc gtcagccgtg gggtgctcgg
     4021 cgcggcgctg cccgcggtgg cacacaccgt ccggatccgg ctgctggccg cggtattcct
     4081 gctcgcggcc tggctgccgt tcaatcttgg ggtacgtccc gagccgtacg tggcgttggg
     4141 gatcaccggt gtgctggcgc tgttgtggcg ggcgcgccgg gtcgccgcgc tgggttgggc
     4201 tgcgctggtc gccgggctga cgattccgat cagcccgagc gggatactga tcgctgcgcc
     4261 ggtggtggtg ttcgcgcccc ggatcgtcgc cattctcggc agttcggccc gcgggcgagt
     4321 cgaagtgctg gcccgtgttc tgctgctgtg ctgcatcggt gcggtgggca tcaccgcgat
     4381 cttcgccgat caaacctggg gcggtctggt caccgccacc cgctggcacg atttcttcgg
     4441 gccctcgctg ccctggtacc acgagccgga tcggtaccgg tacctcctgg gcctggacca
     4501 ggacggcagc gctaccaagc ggatcccggt actgctcacg ctcgcggtgc tgcctgtggt
     4561 agcagtgcta ctcgcccggc agagcaaggc ggcaccggaa ctgaatcaac ggcgcgccga
     4621 gggctcagcc gcacggctca ccggggtggt gatcatcgca ctggccctac tgtggctcac
     4681 gccgtccaag tggtcccatc atttcggcgc gttggccggt ttgctggcgt cgttcctggt
     4741 ggtggccatt gccctgatca tgcaacggaa acaatcgccg atcgggtacc cggtaacggc
     4801 gtggatcggc gtcagcgggg ccgcgctggt ggccggggcg gcggcgctgg ccttcgccgg
     4861 cccgaacgct tggtggcagc cagccgtcta taacgtgccg tgggccaccg gaccggttcg
     4921 cccgcttggt ctgccgctgg attcgccact gttgtggatc ggtgctctgg cattgggcta
     4981 cgccgtgctg gccgcgctgc ggcccgtgag tggcgatacg agccagggct cgtatcgcca
     5041 ctcacggacg ctggttgcgg cgccgggggt gctcgcggtg gcggtggcga gcaccgcggt
     5101 ggctgttgtg ctcggctcct tcctggccgc accggtgcgg caaccagccg gttcgctggc
     5161 cttggcgaac ctgcattcgc tggccggtga accctcgtgc ggcctggctg acagcatcca
     5221 ggtactgccc gatggcgccg tgctggctcc cgccgtctcg tcggtgtctt tctacccggg
     5281 ggctctctat ccggcagccc tctatccagg gctggacctt cctgcgccgg actcccctgg
     5341 gcgcctggcc gggttcaccg cgctgggcgg tttcgacccc agctcaccgc cgcccaaccc
     5401 gcccagtacg gggatgtccg cgcagctgtg gggcagcttg gttggtgggc cccgcagcac
     5461 cgggacactg accagcccgt ggttctggct gcctcccctt ggtccggcca gtggggtggc
     5521 ggtctcggta tccggccgca ctgaccgggg caacacgctg gccctggagt tcggccgggc
     5581 cgtgagcacc ggcgtcgtca cgctgggcca gcgtgcaccg ttggaccggg tgaaactcga
     5641 ccaagaccac ctgcagggcc cgccggacta ccggccgtgg cgctcgatcg gtctggacgc
     5701 ggcgcaggtc cctgggggcg ctgaccgggt ccggatccgc gcggtcgacg ccaccaccga
     5761 tccgaacggt tggctcgccg tcaccgggcc ccggctgcgt tccgtcgtcg ggctgactgc
     5821 gtttctggcc ggccgcgggc cggtgctggt gagctggccg caagcgttct tgttcccctg
     5881 cgtgcagaac atcgccgtag tgaccggcgg gctggccacc acacccgggg ccgtgatcga
     5941 ggcgccgcgc atccacggcc ggctctccgc ggtgacgacg gctcaagacc agggtggtgt
     6001 ttttgcggcg atccgcccgt tcagcagcct ctacgaggtt cccacccggc tagctggccg
     6061 tcccgacctc gactggggcg ccctccacgt cgccggcgac cccgccttcc gggacgccta
     6121 cctctcccga catggagaca tatcgggact ggacgggggc cgataacccc gatatgtctc
     6181 catgtcgggg ggtgggtagc ctcggcggca atgtcagaga tccaggtgcg gacgctgagc
     6241 gggtgggggc ggactgcgcc gagcacggcg cgggtgctga tcgatcccag cgtggagtcg
     6301 atccagcggg cggtgcgggg cgctggtgac cgcggcgtga ttgcccgggg gttggggcgc
     6361 tcctatggcg acccggcaca gaacgccggc gggctggtca tcgacatgac cggcctggcc
     6421 aggatccact ccctcgacgc gggaagcggc ctcgcggtgg tggacgccgg gatcagcctc
     6481 gacgcactga tgcgcgcagc gttgccgtta ggcctgtggg ttccggtgct gccggggacc
     6541 cggcaggtca ccgtcggtgg cgcgatcgcc gcggacatcc acggcaagaa ccaccacagc
     6601 gcgggcagct tcggcaacca cgtccgctca ctcgacctcg tcaccgctga cggctcgata
     6661 gtcacactga ccccagacgg tgatccgatt gccggctcag ccggcagtga gctgttctgg
     6721 gccaccgtcg gcggcatggg actgacgggg atcatcgtgc gcgccacgat cgcgctcacc
     6781 cccgtcgaat cggcgtactt cgtcgtcgac accgaccgca ccggcgacct cgatgagctg
     6841 atggtgctgc tcaccgacgg ctcggatgac cgctacgact actccgccgc ctggttcgac
     6901 gccatctcga ccgggtccaa gctcggccgg gctgtgctca cccgcggctc gctggcccgg
     6961 cgcgacgaac tcccaccgaa gctgcgccgc gatccgctga ccttcgacgc gccgcagctg
     7021 ctcactgcac ccaacgtgtt ccccaacggc ctggccaacc gggcggtctt cggtgcactg
     7081 agcgaggcgt ggtaccgcaa ggcccccaaa cgccgccgca acgagatcca aaacctgacc
     7141 agcttctacc acccgctgga catgatcggt gagtggaacc gggcgtacgg cgcacgaggc
     7201 ttcctccagt accagttcgt cgtgcccatg agcgcgcagg acaccttccg caccatcgtg
     7261 gagcagatcg cgcgctccgg acacgtgtcc ttcctcaacg tgctcaagcg cttcggcgag
     7321 gccagccggg cgccgctgtc gtt
//
LOCUS       DASVXZ010000834         2306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1671730, whole genome shotgun sequence.
ACCESSION   DASVXZ010000834 DASVXZ010000000
VERSION     DASVXZ010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1671730"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /gene="pyrH"
                     /locus_tag="VF788_17705"
     CDS             complement(<1..220)
                     /gene="pyrH"
                     /locus_tag="VF788_17705"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009074499.1"
                     /note="Catalyzes the phosphorylation of UMP to UDP;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX8935972.1"
                     /translation="MNADRVEGLGYRRVLLKLGGEMFGGGGVGVDPEVVKAVARQIAD
                     VVASGMQMAVVIGGGNFFRGEELQQGGME"
     gene            complement(228..1043)
                     /gene="tsf"
                     /locus_tag="VF788_17710"
     CDS             complement(228..1043)
                     /gene="tsf"
                     /locus_tag="VF788_17710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HEX8935973.1"
                     /translation="MANYSAADVKRIRDLTGSGMMDCKKALEESDGDFDRAVELLRIK
                     GAKDVGKRAERTTANGLVAAEGGVMIELNCETDFVAKGADFQELASRIVAEAVKVRPA
                     DAEALAHTPLGGSTVEELVQETSAKIGEKLQLRRVVSFDGEVATYLHRRASDLPPAVG
                     VLVEYDGGSPEAARAVAMQVAAMKPRYVSRDEVPADVLADERRIAEETAREEGKPEQA
                     LQKIVEGRLGGFFKDTVLLEQSSVQDSKKTVKALLDGAGVTVRRFARFEVGQA"
     gene            complement(1103..1978)
                     /gene="rpsB"
                     /locus_tag="VF788_17715"
     CDS             complement(1103..1978)
                     /gene="rpsB"
                     /locus_tag="VF788_17715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEX8935974.1"
                     /translation="MAVVTMKQLLDSGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQ
                     QTLTYIDRAYEFIKQTVAHGGSILFIGTKKQAQEAISHHAQRVGMPFVNHRWLGGMLT
                     NFSTVHKRLQRLKELEAMEQTGGFSGLTKKEILMRTREKDKLEKTLGGIRDMQRVPSA
                     VWVVDTKKEQIAVGEARKLGIPIVAILDTNCDPDEVDYPIPGNDDAIRSAALLTRVVA
                     DATADGLMSRAGRSTGADGTDKPAAGVGVDEPLAEWEQELMVSGDTAAGSAPERETAP
                     PQPEPMVANNGVSQG"
BASE COUNT          363 a          784 c          707 g          452 t
ORIGIN      
        1 gctccatacc gccctgctgg agctcctcgc cgcggaagaa gttcccgccg ccgatcacca
       61 cggccatctg catcccgctg gcaaccacgt cggcgatctg ccgcgcgaca gccttcacta
      121 cctcgggatc aaccccgaca cccccaccgc cgaacatctc cccgccgagc ttgagcagca
      181 ctctgcggta tccgagaccc tctacccggt cggcgttcat cggtagctca ggcctggccg
      241 acctcgaagc gagcgaaccg gcgcacagtc acgccggcgc cgtcgagaag tgccttgacg
      301 gtcttcttgg agtcctgcac ggaggactgc tccagcaaga cggtgtcctt gaagaaaccg
      361 cccaggcgac cttcaacgat cttctgcagc gcctgctcgg gcttgccctc ctcgcgagca
      421 gtctcctcgg cgatgcgccg ttcgtcggcc agcacgtcag ccggaacctc gtcccggctg
      481 acatagcgcg gcttcatggc ggccacctgc atcgctaccg cccgggctgc ctccggcgaa
      541 ccaccgtcat attccaccag cacacccacc gccggtggga ggtcggaggc gcgacgatgc
      601 aggtaagtgg ccacctcgcc gtcaaaggac accacccggc gcagctgcaa cttctcgccg
      661 atcttggcgg aggtttcctg gaccagctcc tcgaccgtgc tgccgcccag tggcgtgtgc
      721 gcgagcgctt cggcgtcggc gggacggacc ttgactgcct cggcgacgat ccggctggcg
      781 agttcctgga aatcagcacc cttcgcgacg aaatctgtct cgcagttgag ctcgatcatc
      841 acgccgccct cggcggctac cagcccgttc gcggtggtgc gctcagctcg tttgccgaca
      901 tccttggcgc ccttgatgcg cagcagttcg acagcccggt cgaagtcgcc atcggattct
      961 tccagagcct tcttgcagtc catcatcccg gaaccagtca ggtcccggat tcgcttgaca
     1021 tcggcggcgg agtaattcgc catcgtggct ttaccatcct ggagtttgtt atcggatcgg
     1081 gaaattcggc gccgctggga ccttaaccct gcgacacgcc attgttggca accatcggtt
     1141 cgggctgcgg tggtgcggtt tcccgctcgg gcgcactgcc ggcagcagta tcgccggaca
     1201 ccatcagctc ttgctcccac tcggccagcg gctcgtcaac tcctactccg gctgccggct
     1261 tgtccgttcc gtcggctccg gtggagcgtc cggcccgcga catcaagccg tcggcggtgg
     1321 cgtctgccac cacccgggtg agcagtgccg cggagcggat cgcgtcatcg ttacccggga
     1381 tggggtagtc gacctcatca ggatcgcagt tggtgtccag gatggccacg atcgggatgc
     1441 ccagcttgcg agcctcgccg acggcgatct gttccttctt ggtgtccacc acccagaccg
     1501 cgctgggaac ccgctgcatg tctcggatgc cacccagggt cttctccagc ttgtccttct
     1561 cccgggtacg catcaggatc tcttttttgg tcagcccgga aaaaccgccg gtctgctcca
     1621 tcgcctctag ttccttgagg cgctgcaggc gcttgtgcac ggtggagaag ttggtgagca
     1681 tgccgcccaa ccagcggtgg ttcacgaagg gcatgccaac ccgctgggcg tgatgtgaga
     1741 tcgcttcctg ggcctgcttc ttggtgccga tgaacaggat cgaaccgccg tgagccacag
     1801 tttgcttgat gaattcgtag gctcggtcga tgtaggttag cgtttgttgc aggtcgatga
     1861 tgtagatgcc gttgcgctcg gtgaagatgt aacgcttcat cttcgggttc cagcggcggg
     1921 tctggtgccc gaaatgcacg ccggaatcga gcagctgctt catggtgacg acggccatgg
     1981 ccggtgcaca cctcgatgtg tcaggcgtga cgggctccgc cgccacgctc atgcggttgt
     2041 cgcggcgggc cgggtcagac cgccgccctg gcgccaggcc ggcgaccgga ccccgtttcg
     2101 atcaccgatc gcaacaagga ccgccggacg ccgaaacccc gtgaggagtg agcgctggcg
     2161 cgcgaagtcg acccgcatac gggccgcttc tgcagtgtac gacctgccta gtggttgacg
     2221 ctgcgcaggt gaggctgtcg tatgcagctg tccacagtgc tttctttatc cacagcggtg
     2281 ggcttcgacg ctgggcagtc gcgacc
//
LOCUS       DASVXZ010000835         4849 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_596847, whole genome shotgun sequence.
ACCESSION   DASVXZ010000835 DASVXZ010000000
VERSION     DASVXZ010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4849
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596847"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1432)
                     /locus_tag="VF788_17720"
     CDS             complement(<1..1432)
                     /locus_tag="VF788_17720"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8935975.1"
                     /translation="MSERGGVVECRITPPHQPAQRCSKVLTNASQEARTRCDGVALGS
                     ANTTKTYVYFGGMASTLPPGPPLLGVVQAGLIWLDPIRFVNTCHRRYGDLFTVRIPGI
                     GTLVFLADPDDIRKVTRGDPAIFHAGEAAFPLAQVVGKNSLLMLDEDRHRRSRGMMLP
                     AFHGDSVRRQVAEMITITAEEVARWPVGEQFPLFPRMQRLTLEIILRTVIGVHDERRL
                     AALRAALPPMLEIGSPVELIPPPEVLLRFGMWRRRAERRAAALALLTDEVTRCRADPQ
                     LEKRTDALAMLVRSVDGTQVQMPDDELVDQLVTLLLAGHDTTATALSWAFERLTRHPQ
                     LLARTAHAAADGDDAWLDAVCKESLRVRPVVFEFGRKLTAALELGGYRIPAGVILAPS
                     INLVHHSSRNYPDPDEFRPQRFVDQRPDPTVWLPFGGGVRRCLGAAFAQVEMRTVLRE
                     ILTKIELAPTTALDEPVRPRHVTMVPR"
     gene            complement(1438..1737)
                     /locus_tag="VF788_17725"
     CDS             complement(1438..1737)
                     /locus_tag="VF788_17725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1416 domain-containing protein"
                     /protein_id="HEX8935976.1"
                     /translation="MCGAPEQTLDLPAGTDLNKQTVLAGTVRAAEEPLGGAFVRLLDG
                     TGEFTAEVVSSASGTFRFFTAPGNWTVRALHHSGNGEAAVTADGPGLYAVDVAVS"
     gene            complement(1743..2585)
                     /locus_tag="VF788_17730"
     CDS             complement(1743..2585)
                     /locus_tag="VF788_17730"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX8935977.1"
                     /translation="MSRENVLVTPDWAEQNLDTDGVVFVEVDEDTAAYDAGHIPGAVK
                     INWKTELQDPVIRDFVDKGAFEKLLSDKGISNDDTVVLYGGNNNWFAAYAYWYFKLYG
                     HDDVKLLDGGRKKWELDGRTLTTDEVNRPATSYTAKHDQDTTIRAFRQEVIEAINNKN
                     LVDVRSPDEFSGKIMAPAHLPQEQAQRPGHIPGALNVPWSKAANEDGTFKSDDELRAL
                     YQAAGLDEGKSTIAYCRIGERSSHTWFVLHELLGHSDVKNYDGSWTEYGSLVGAPIAR
                     GSEG"
     gene            complement(2942..3673)
                     /locus_tag="VF788_17735"
     CDS             complement(2942..3673)
                     /locus_tag="VF788_17735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8935978.1"
                     /translation="MNKPAPWIEDRWPTDPARVRSIVLVLHGGQARSPVTVRRRTQLS
                     YLRMVPFARLLHRRDRECGISVRILRYRYRGWDEPELHPVQDARWALTQLRDQYPQTP
                     IALLGHSMGGRAALRVADDPAVTAVCALAPWTLDDEPVRQLAGRSVLIAHGDRERTTD
                     PRLSYRFAVRAKQITSRVCRFDVLGDGHAMLRRARDWSELSARFVEAELGLRRPDALI
                     EDAMRRPAPEGLRVPLPRNLSHERP"
     gene            complement(3670..4443)
                     /locus_tag="VF788_17740"
     CDS             complement(3670..4443)
                     /locus_tag="VF788_17740"
                     /inference="COORDINATES: protein motif:HMM:NF022655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2993 domain-containing protein"
                     /protein_id="HEX8935979.1"
                     /translation="MRKLIITVLIVIALAVAADFGAAAFAEYTIAKQLRQQLTLANDP
                     SVRINGFPFLTQAVAGHYSAIDVRAGGVTADPLHDLDVEATLHDVEAPLSEVTSGTLH
                     SVRAARVDGRVRIKDSDLGRAIGIEDLRIQQPSDQEIKELLPAGTPTGASARSDRAPV
                     RMTATTDLLGQRTDIIGVGLIELTGGLVRITVKDVRLSRDGVGQVNLPRGIRQTLLTT
                     LSTNVKPGGLPFAVTPTSVEVQTGSVVVEGTANNVTMSQ"
     gene            4588..>4849
                     /locus_tag="VF788_17745"
     CDS             4588..>4849
                     /locus_tag="VF788_17745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HEX8935980.1"
                     /translation="MELLLLTADPGSASVLPALSLLGHGVRSAAPEVAALLDAGPYDA
                     VLVDARLDLAGSRSLCRLLGSTGLDVPVVVVISEGGLVALSAD"
BASE COUNT          783 a         1576 c         1614 g          876 t
ORIGIN      
        1 gccgtggcac catggtcacg tggcggggcc gtaccggctc atccagcgcg gtggtcgggg
       61 ccagctctat cttggtcagg atctctcgca gcactgtccg catctccacc tgcgcgaagg
      121 cggcgccgag gcagcggcgt actcctccgc cgaagggtag ccagacggtc gggtcaggcc
      181 gctggtcgac gaagcgctgc ggacggaatt cgtcgggatc agggtagttc cggctgctgt
      241 ggtgcaccag gttgatgctg ggagcgagga tgactccggc cggaatgcgg tagccaccca
      301 gttccagtgc agcggtgagt ttgcggccga actcaaagac caccggtcgc actcgcaggc
      361 tctccttgca taccgcgtcg agccaggcgt cgtctccatc ggccgcggcg tgcgcggtgc
      421 gggcgagaag ctggggatgg cgggtcagcc gctcaaaagc ccaggacagc gcggtggcgg
      481 tggtgtcgtg cccggccagg agcagagtga cgagctggtc gacgagctcg tcatcgggca
      541 tctgcacctg ggtgccatcc acgctgcgta ccagcatcgc cagtgcatcc gtgcgcttct
      601 ccagttgcgg gtcggcacgg cagcgggtga cttcgtcggt gagcagcgcc agggctgctg
      661 ccctgcgctc ggcgcgacgg cgccacatgc cgaaccggag cagcacctcc ggcggcggga
      721 tcagctccac cggcgaaccg atctccagca tcggcggcaa cgccgctcgc agtgcagcga
      781 gccggcgctc gtcgtgcacc ccgatgacgg tgcgcaggat gatctcaagg gtgagccgct
      841 gcatgcgggg aaacagcggg aattgctcac ctactggcca ccgagcgacc tcctcggcgg
      901 tgatggtgat catctcggcg acctgccggc gcaccgagtc gccgtggaac gccggcagca
      961 tcatcccgcg acttcgccgg tgccgatcct cgtcgagcat gagcagcgag ttcttcccga
     1021 ccacttgggc gagggggaaa gctgcctcgc cggcgtggaa gatcgccggg tccccccggg
     1081 tcacctttcg gatgtcatcc ggatcggcca ggaacaccag ggtgcctatc ccgggtatcc
     1141 ggacagtgaa tagatctccg taacgccggt ggcaggtgtt cacgaagcgg attggatcca
     1201 gccagatcag gccggcctgc acaacaccca gcaggggcgg gccggggggt aacgtgctcg
     1261 ccataccgcc aaaatataca tacgtttttg tcgtgttcgc tgatcccagc gcgacgccgt
     1321 cgcagcgcgt gcgggcctcc tgggaggcgt tggtgagcac cttcgagcag cgctgagcgg
     1381 gttggtgggg cggggttatc cggcactcga caaccccgcc ccgctcgctc aaggcgatca
     1441 ggacacggcg acgtccaccg cgtacaggcc tgggccatcg gcggtcacgg ccgcctcacc
     1501 gttgccggag tggtgcagtg cgcggacggt ccagttccca ggggcggtga agaagcggaa
     1561 ggtcccggac gcggaggaca ccacctcggc ggtgaactcg ccagtgccat cgagcaaccg
     1621 gacgaaggcc cctccgagag gttcctcagc tgctcgcacc gtgccggcca gcacggtttg
     1681 cttgttcaga tccgtgcccg ctggcagatc cagggtctgt tccggtgctc cgcacatggt
     1741 gatcagccct cgctgccgcg tgcgatcggt gcgccgacaa gcgagccgta ctcggtccag
     1801 gatccgtcgt agttcttgac gtcggagtgc cccagcaact cgtgcagcac gaaccaggtg
     1861 tggctggaac gctcaccgat ccggcagtag gcgatggtcg acttgccctc gtccaatccg
     1921 gctgcctggt agagcgcccg caactcgtcg tcggacttga aggtgccgtc ctcattggcg
     1981 gccttggacc acggcacgtt cagggcgccg ggaatatgtc cggggcgctg agcctgctct
     2041 tgcggcaggt gcgccggcgc catgatcttg ccggagaact cgtcgggcga gcgcacatcg
     2101 accaggttct tgttgttgat cgcctcgatc acctcctggc ggaacgcccg gatcgtggtg
     2161 tcctggtcat gtttggcggt gtagctggtg gccggccggt tcacctcatc agtagtcagg
     2221 gtgcgaccgt cgagttccca cttcttgcgt ccgccgtcga gcagcttgac gtcatcgtgg
     2281 ccgtaaagct tgaaatacca gtaggcgtag gcggcgaacc agttgttgtt gccgccgtag
     2341 agcaccacgg tgtcgtcgtt gctgatgccc ttgtccgaca acagcttttc gaaggcacct
     2401 ttgtcgacga agtcgcggat taccgggtcc tgcaattcgg tcttccaatt gatcttcact
     2461 gcgcccggga tgtgccctgc gtcgtaggcg gcggtgtctt cgtcgacctc gacgaagacg
     2521 acgccatcgg tgtccagatt ctgctctgcc cagtccggtg tgaccaggac gttttcacgg
     2581 ctcatgcaac agctcctcgt tcggtgttgg cgttgttcac aactgatgcc ccccgctggc
     2641 cgcacgaaag ggcgccagcc ggagataggt atctacggtg caccccttga ccggactgtc
     2701 ccagctgcac cagcgatcgt gcgcaggtca gcgcccggtc aggggctacc gacagaggct
     2761 gctgtgcagg cggcagaaat caaccgcccg gcgcttggtc agcagcgagt gcacgaaggc
     2821 gagactaccg gaatttactg atgcagggga tcgtcgtgcc aggagcctga tggcaggcaa
     2881 ctcggacaga aacccgtccg ttcccccggt ggagtgatca ggcaatacat tagtgcactg
     2941 gctatggtct ttcgtgggag agatttcggg gcaacggcac ccggagcccc tccggagccg
     3001 gtcggcgcat cgcgtcctcg atgagcgcgt cgggtctgcg cagccccagt tctgcttcca
     3061 cgaaccgggc gctcagctct gaccagtcgc gtgcgcgacg gagcatggcg tggccatcgc
     3121 cgagcacgtc gaaacggcac acccgagaag tgatctgctt ggcgcgcacc gcaaaccggt
     3181 aggacaaccg gggatcggtc gtgcgctccc ggtcgccatg ggcgatgagc accgaacgcc
     3241 cggcgagctg gcgcaccggc tcatcgtcca acgtccacgg cgccaacgca cacaccgcgg
     3301 taaccgccgg gtcatcagcc acccgcaacg ccgcccgccc acccatcgaa tggcccagca
     3361 gcgctatcgg cgtctgtggg tattgatccc gcagctgcgt taatgcccac ctcgcgtctt
     3421 gcaccgggtg cagctctggc tcgtcccatc cccggtagcg ataccgcagg atgcgcaccg
     3481 atatcccgca ctcgcgatca cgccggtgga gcaaccgggc gaaagggacc attcggaggt
     3541 agctcaactg cgttcgtcgc cgaaccgtaa ccggactgcg ggcttgcccc ccgtgcaaca
     3601 ccagaacaat cgaacgcacc ctcgccggat cggtcggcca gcgatcctca atccacggtg
     3661 caggtttgtt cactggctca tggtgacgtt gttcgcggtt ccttccacga ccactgagcc
     3721 agtctgcact tctacgctgg tcggggtgac ggcgaacggc agtcctccgg gtttcacgtt
     3781 tgtgctcagc gtggtgagta gggtctggcg gatcccccgg ggcaggttca cctgaccgac
     3841 accgtcccgg gacagccgga cgtctttgac ggtgatccgc acgaggccac cggtgagctc
     3901 gatgagcccg acaccaatga tgtcggtgcg ctgcccgagg aggtcggtcg tcgccgtcat
     3961 ccgcactggc gcgcggtcgc tacgggcaga cgcgccggtc ggtgtgcccg ccggcaacaa
     4021 ttccttgatt tcctgatcgg atggctgctg gatgcgcagg tcctcgattc cgatcgctcg
     4081 cccgaggtcg ctgtccttga tccggacccg accgtctacc cgtgccgccc gcaccgagtg
     4141 cagagttcct gaggtcacct cggacagtgg cgcctcgacg tcgtgcagcg ttgcctcgac
     4201 gtcgaggtcg tgcagcgggt ccgcggtgac ccccccggcc cgaacgtcga tggcagagta
     4261 atggccggcc accgcctggg tcaggaacgg gaagccgttg atccgcacgg acgggtcgtt
     4321 cgccagagtc agctgctggc gtaactgctt ggctatcgtg tactcggcaa aagctgcggc
     4381 accgaaatcc gccgccaccg ccaaggcgat gacaatcagt actgtgatga tcagcttgcg
     4441 cacgcagccc taccccccgg catccgtttc gtattggtgg tgcgacaggc acggtattct
     4501 tcgcagaaca cacgtcaggt tgcgcccctg ggccgtgacc tggtggtaat aatttgccgg
     4561 gcctccacac ggcaggaggg agcgggcatg gagctgctgt tgctcaccgc ggaccctgga
     4621 tcggcctcgg tcttgccggc gctgtccctg ttggggcatg gcgtgcgctc ggccgctccc
     4681 gaggttgcgg ccttgctgga cgccggcccc tacgacgcgg tgctggtcga tgcgcgcctg
     4741 gacctggccg ggtcacgcag tctgtgccgg ttgctgggct ctaccggtct ggacgtgccg
     4801 gtagtggtcg tgatcagtga gggtgggctg gtggcgctgt ccgccgact
//
LOCUS       DASVXZ010000836         1957 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1043101, whole genome shotgun sequence.
ACCESSION   DASVXZ010000836 DASVXZ010000000
VERSION     DASVXZ010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1043101"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1498)
                     /locus_tag="VF788_17750"
     CDS             complement(47..1498)
                     /locus_tag="VF788_17750"
                     /inference="COORDINATES: protein motif:HMM:TIGR00350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0070726 - cell wall assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEX8935981.1"
                     /translation="MFVLTGYGWSSFQDLHQGLSTTNVIGAATPDKAIDILLVGLDSR
                     TDAHDNPLPRQVLSQLRAGNNEGELTDTMILVRIPNDGRHAVAISLPRDLYVQLPEGY
                     GKHKLNSAFTRAKSATAERLVAQGVDPATVRTESIAAGRKLLLEAVKDLTGVGIDHYA
                     EVNLLGFALLTDAVGGVPVCLLAAVHDRFSGANFPAGPQLISGADALAFVRQRHGLPR
                     GDLDRIVRQQAYLASLANKILTAGTLANPSRVRQLINAAQQSLVLDEGFDVLDFAARM
                     QGLTAGNVVFETVPVLGDGDSESDGSVLKVDPEAVRTFVAQAVDPTSVNPNPAGPLAK
                     ATITVEVFNASSVTGLAKSVAEQLTGQGFLQGTVGNSRVRNTSVVRYPTGGEEAGQKV
                     ADVLGGLPVEEDSNLTTGTVQVYLGKNYAGPGRPRIGGASLLTVDTSHASGAVRTIPD
                     TEGGADTSTLVSAPDPTPPPNPPMVGSKVSCVS"
BASE COUNT          318 a          631 c          659 g          349 t
ORIGIN      
        1 tctgagctta acttcgtgcc aagctcgact caccagtgct ggtgggtcag gagacgcagg
       61 acaccttgct gcccaccatc ggcgggttcg gcgggggtgt gggatcggga gcagacacca
      121 aggttgacgt gtcagcgcct ccctcggtgt ccgggattgt ccgcacggca ccactagcat
      181 gtgaagtgtc caccgtcagc agcgacgcac ccccgatccg gggcctaccc ggtcctgcat
      241 agttcttgcc gagatagacc tgcaccgtgc cggtggtcag gttggagtcc tcctcgactg
      301 gcaggccgcc cagcacgtcg gccaccttct gaccggcctc ctcgccgcca gttgggtacc
      361 gcaccacact ggtgttccgg acgcgactgt tgccgactgt gccctgaagg aatccttgtc
      421 cggtcagctg ctcggcgact gacttggcca gaccggtcac cgaggaggca ttgaacacct
      481 cgaccgtgat agtcgctttc gccagcgggc cggccgggtt tgggttgacg gacgtggggt
      541 cgacggcttg cgcgacgaag gtacgcacag cctccggatc gactttcagc accgagccat
      601 cggactcgct atcgccgtca ccgagcaccg ggacggtttc gaacacgaca ttgccggcgg
      661 tgaggccctg catccgggcg gcgaagtcca gtacgtcaaa gccctcgtca aggaccaatg
      721 actgttgggc cgcgttgatc agctggcgga cccggctggg atttgccagc gttcccgcag
      781 tgaggatctt gtttgccagc gaggccaaat aggcctgctg gcgcacgatc cggtcgaggt
      841 caccgcgagg caatccgtgc cgctgccgga cgaacgccag cgcgtccgct cctgagatca
      901 gctgcgggcc ggcagggaaa ttggcgccgg agaacctgtc gtgcaccgcc gcgagcaggc
      961 ataccggcac gccgccgacc gcgtcggtca gcagcgcgaa cccgagtagg ttgacctcgg
     1021 cgtagtgatc gatgccgacc ccggtgaggt ccttcacggc ctccagcagc agctttcgcc
     1081 cagcggcgat ggactcggtg cgcactgttg ccgggtcgac gccttgggcg acgaggcgtt
     1141 ccgcggtagc gctcttggcg cgggtgaatg cggagttgag cttgtgcttg ccgtacccct
     1201 cgggcagctg tacgtacagg tccctcggta gcgagattgc taccgcatga cgaccatcat
     1261 tcgggatccg caccagaatc atggtgtcgg tgagctcgcc ctcgttgttt ccggcgcgta
     1321 gctgggacag cacctgccgg ggaagcgggt tgtcgtgcgc gtcagtgcgg ctgtccaggc
     1381 ccaccaggag gatgtcgatg gccttgtccg gtgtggccgc gccgatcaca ttcgtggtgc
     1441 tcaagccctg gtgaagatcc tggaaagagc tccacccgta gccagtgaga acgaacacca
     1501 gcgccgagac catcgcgagc gcgagtttgc cgagctgaag cccgtaacga cggcgccgcc
     1561 ggacgggggc gacgctgcta cgcccccgag atgacgggcg attcctcgca actggtgcgc
     1621 gctgctggct cccgtattgg tgggcgcggc gtcgcgtagg actgcgtcgc ccggaaccag
     1681 gacgctcgga accagagcga tcggaccgcc cgaagccacc cgaccgggct ggcctgtcgt
     1741 ccacggatgc cctcctgcgt cctgcgactg atgcggcggc agtgcccagg ttatggcgcg
     1801 gcccaccctg ggcctgcgcg tagtcgtatc ccttccagca gctgtctagt ccagacgtgt
     1861 gaacccctag tgaggttgtc atggcagact cgaccgctgt tggccggtat tgccggcgag
     1921 atgagaaggg tgcgccgatg cggctgctgg tcaccgg
//
LOCUS       DASVXZ010000837         1989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_775824, whole genome shotgun sequence.
ACCESSION   DASVXZ010000837 DASVXZ010000000
VERSION     DASVXZ010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775824"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            367..1455
                     /locus_tag="VF788_17755"
     CDS             367..1455
                     /locus_tag="VF788_17755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020644002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEX8935982.1"
                     /translation="MSRAAAPLAISDGQREVLETLARSRSAAHRVVQRARVLLLAADG
                     VSNSEISEVVGVSRPTVLAWRGQFEKDGLVGFGEVATGRGRKPSISDEKVAEIVDLTL
                     HSKPEGETHWSCRSMARRAGVSSASVQRIWSARGLKPHLVKTFKLSNDCHFEEKLIDV
                     VGLYLNPPDQAVVLCMDEKSQIQALDRTQPSLPMKKGRAGTMTHDYKRHGTTTLFAAL
                     NVLTGTVIGRCLPRHRNTEFLKFLRIIDREVPKGLQIHMICDNYGTHKHANVKKWLAK
                     HPRFHLHFIPTSSSWLNLVERWFRDLTDKAIRRGVFHSVNDLMTAIEDYLKVNNDNPK
                     PFIWTATAEQILAKVARGRVALQEVQNQ"
     gene            complement(1449..1829)
                     /locus_tag="VF788_17760"
     CDS             complement(1449..1829)
                     /locus_tag="VF788_17760"
                     /inference="COORDINATES: protein motif:HMM:NF024306.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX8935983.1"
                     /translation="MAASLVARAAAAEIEVPPPEFTGRDYLICLLHVAAEIEHSLMVR
                     YLFTAYSLGGPDVPENRRADVRTWQETTLGIVNEEMGHLITIQNLLTALGAPLNFNRK
                     DYPHGSAFYPSGFTLQPASVVSHY"
BASE COUNT          440 a          567 c          612 g          370 t
ORIGIN      
        1 aggcgagacc tccaggcggc accctggaca cccgaatgcc tcggctgcgt tcaaaaggat
       61 acggaagtta tcatggaaca ccattggaaa cattggctaa gtgttttcgc aactgcgacg
      121 gtcctcgcta gcgggctagc cgcgatcttc catcgcgaca acacaacagc gcgacagtcc
      181 tcaaatcgct gcagcggtgc atgcccctgc gggaccatct aaagcatatc aggaaacgtt
      241 aagatttgtt ctgcaggcgc gataccgatt gcgcagggac ggcgctgcgg gtcctaggtt
      301 cggagacggt aacgcagcgc tagtgtagtc ttgcaattga gtttatagtg cattatgcta
      361 cgaggcatga gtcgagcagc ggcgccattg gcgatatccg atgggcaacg agaagtcctg
      421 gaaaccttgg ccaggtcgcg gagcgcggcg catcgtgtgg tgcagcgagc ccgggtgttg
      481 ctgttggctg ccgatggggt gtcgaattct gagatcagtg aggtagtcgg ggtatcgcgt
      541 ccgaccgtgt tggcctggcg tggtcagttt gagaaagacg ggctggtggg attcggtgag
      601 gtggccacag gacgcggccg caaaccgtcg atcagtgacg agaaggtcgc cgagatcgtg
      661 gatttgacgc tgcactcaaa accggagggc gagacgcact ggtcgtgtcg gtcgatggcc
      721 agacgggccg gggtgagctc ggcatcggtg cagcggatct ggtcggcgcg agggctcaaa
      781 cctcatctgg tgaagacctt caaactctct aatgattgcc acttcgagga gaagctcatc
      841 gacgtggtgg gtctgtacct gaatccgccc gaccaggccg tggtgctgtg catggatgag
      901 aagagccaga tccaggcctt ggaccgcacc cagccgtccc tgccgatgaa gaagggccgg
      961 gctggcacga tgacccatga ctacaaacgg cacggcacca ccactctgtt cgccgcactg
     1021 aacgtgctta ccggcacggt aatcggccgc tgcttgccgc ggcaccgcaa taccgagttc
     1081 ttaaagttcc tgcgcatcat cgatcgcgag gtgcccaaag gactgcagat ccacatgatc
     1141 tgcgataact acggcaccca caagcatgcc aacgtcaaga aatggctggc caaacacccg
     1201 cggtttcacc tgcacttcat ccccacctcc tcgtcgtggc ttaatctggt cgagcggtgg
     1261 tttcgggacc tgaccgacaa ggccatccgt cggggcgtgt tccacagcgt gaatgacctc
     1321 atgaccgcga ttgaggacta cctgaaagtc aacaacgaca acccgaaacc attcatctgg
     1381 accgccaccg ccgagcaaat tctcgccaag gtcgcccgtg gacgagtcgc gctccaagaa
     1441 gtgcaaaatc aataatgaga cactacacta gccggctgaa gagtaaatcc agaagggtag
     1501 aaggcgctgc cgtgcgggta atctttgcgg ttgaagttga gcggggcgcc gagtgcggtg
     1561 agcagattct ggatcgtgat caggtggccc atttcctcgt tgacaatgcc aagggttgtt
     1621 tcctgccagg tgcggacatc agcccgccgg ttctcgggca catccggccc gccgagcgaa
     1681 taagcggtga acaggtaccg caccatcagc gaatgctcga tctcagcggc aacgtgcagc
     1741 aagcagatca gataatcgcg gccggtgaac tcgggtggcg gaacctcgat ttcggccgct
     1801 gcggcgcggg ccaccaggct cgccgccacg tcgtcacgac gagctgagct cgtttccgtg
     1861 agtgcagtcc caaaatgccg gctgatgcgc gagcgcaaac gtcccactaa caacgaatca
     1921 acgtggcacc ccgacggcaa acactgatgc tactaccgcc ttggctggtg agataggaga
     1981 tagccgcca
//
LOCUS       DASVXZ010000838         6408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1043367, whole genome shotgun sequence.
ACCESSION   DASVXZ010000838 DASVXZ010000000
VERSION     DASVXZ010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6408
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1043367"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /gene="thpR"
                     /locus_tag="VF788_17765"
     CDS             complement(<1..396)
                     /gene="thpR"
                     /locus_tag="VF788_17765"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HEX8935984.1"
                     /translation="MRLFVALTPPAEIVDDLASAIAPVRLRAPGLRWTPTEQWHVTIA
                     FFGEVSEDSVDKLTNRLRRTAARHPPLSLTFTGGGRFGHRVLWTAVHGDRDGLRALSD
                     SAKAAARRCGLPVEQRPHRPHLTLARAGAG"
     gene            complement(485..814)
                     /locus_tag="VF788_17770"
     CDS             complement(485..814)
                     /locus_tag="VF788_17770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935985.1"
                     /translation="MLVGPNAGLGHASLIYMIEFQVAYTLDALRYLRRSGSAAVEVRP
                     EAQVAYNQTLQRRMADTVWVSGGCASWYLDAHGGNTTLWPTFTCRFRRATRKFDPTEY
                     RTHSAPS"
     gene            complement(1401..1736)
                     /locus_tag="VF788_17775"
     CDS             complement(1401..1736)
                     /locus_tag="VF788_17775"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEX8935986.1"
                     /translation="MGIRLHQHGMTDFVLLERAAEVGGTWRDNRYPGCACDVPSQLYS
                     FSFELNPPGAAASPDSRRSGTTCATASTATTSVAISVLTMMYSRPRGIIPGAAGRCTP
                     TTASWPVTS"
     gene            2061..2711
                     /locus_tag="VF788_17780"
     CDS             2061..2711
                     /locus_tag="VF788_17780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935987.1"
                     /translation="MIRETDGRGVPVAPESLIEARGTVLGSQLWTAEPVEVLGPPDHL
                     AHAAVDALGWDGVVLPPMVLLGRRVVAVVNLIADVHQRRISSGWGPVTDRVSVSTWDW
                     PEMRHLVPAPAVELSGIIAPARHWRTGLTGAAPFTGLCPTALLLPAHIARNVECLTHA
                     EYYGPTVLAAAGPHDVDPEAVDVVHAGRSRAVATAQPTKITRWIYEMVYDRLVKLH"
     gene            complement(2747..2829)
                     /locus_tag="VF788_17785"
     tRNA            complement(2747..2829)
                     /locus_tag="VF788_17785"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2794..2796),aa:Leu,seq:cag)
     gene            2941..3903
                     /locus_tag="VF788_17790"
     CDS             2941..3903
                     /locus_tag="VF788_17790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013222008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3662 and FHA domain-containing protein"
                     /protein_id="HEX8935988.1"
                     /translation="MGKAQRFERRLQGMVGDAFARIFGGSVVPQEVAQALLREADDNA
                     RPLAGGRVLAPNRYTVRLGAADHDRLAGDEQRVIRMLKSCIRTHIAEQGWDVYGDVVV
                     ALKLSGALHTGQFRTSSSVDPDTPQPRNAGDRSMSQQPGGPAVPDYGQPSGEFQDQRY
                     DQGPGSSRNFGGYAYDQGAGYQLGYGQGNPGEHYQQPPGQYDEAGYDEAQPAYGYDGY
                     GQAADRLLSASLTLDDGSDRYYELTEGTMVVGRGQEAQFRLPDTGVSRRHLEITWDGR
                     TALLTDLGSTNGTTVNGTPVQTWQLVDGDVVRVGQSRLVFRTQG"
     gene            4034..4489
                     /locus_tag="VF788_17795"
     CDS             4034..4489
                     /locus_tag="VF788_17795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX8935989.1"
                     /translation="MPELVLQLTRAGFLLLLWLFVVAALRIVRSDLFAASGLRASLPM
                     SRRSARAERDRTPRQLVVTAGGLAGTRISLDGRPILIGRADDSTLVLDDDYASTRHAR
                     LGFQGGDWFLEDLGSTNGTYLDRAKVTGPTRVPLGVPIRIGKTVIELRT"
     gene            4486..5904
                     /locus_tag="VF788_17800"
     CDS             4486..5904
                     /locus_tag="VF788_17800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HEX8935990.1"
                     /translation="MTLVLRYAAKSDRGLVRQNNEDSVYAGPRLLALADGMGGHAAGE
                     VASKAVIAAFAPLDDDEPGNDLLDQLHEATMAGNAAISDLVREDPEREGMGTTLTAVL
                     FGGNKIGLAHVGDSRAYLLRDGVFSQITRDDTFVQSLIDEGRISAHEASHHPQRSLLL
                     KALTGQEVEPSLTVREARAGDRYLLCSDGLSDVVSAENLAEGLTMADPQACADRLIEL
                     ALRGGGPDNITCVVADVVDVEYGEDAPIIAGAAGDGVEQPQPDSAASRAATTTLPRPT
                     EPKRVEPAPPDPQLRQRKRKRALIGLAALATLIAGVTAIGSILVLGQYYVGAARDGEV
                     AVFQGVRGEFLGLPLHSWAEGSCRDAARGCETVFLRDLQPYARTNVSRGMISNNGLGG
                     AREIIGRLRTNDLLPLCPQNVAGPQSIGGPQNAAGTSPAEVPTSVSPFATETSAPAIP
                     TTTGTPLPEKPSEPGVDCRTVG"
     gene            5904..>6408
                     /locus_tag="VF788_17805"
     CDS             5904..>6408
                     /locus_tag="VF788_17805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HEX8935991.1"
                     /translation="MVASVPIQDTGSQPAVSPPTKRGLELIMLAFAAVVVTAALVLVE
                     LNQPQGLTRSVLYDGAAYLALFSAAHIAVRWLAPYADPLILPCVALLNGLGLVVIHRL
                     DLADAASATSIGAAVPAGNVPHQIAWTALGLGFFVAVLALVRDHRMLARYGYTCGLAG
                     LAALALPG"
BASE COUNT         1115 a         2109 c         2121 g         1063 t
ORIGIN      
        1 tccggcgccc gcccgcgcca gggtgagatg cggccggtgt gggcgctgtt ccaccggcag
       61 accgcagcgg cgggccgcgg ccttcgcaga atcggacaaa gctcgcagcc cgtcacgatc
      121 accgtgcaca gctgtccaca acacacggtg tccgaaccgc ccgccaccgg tgaaggtcag
      181 cgacagcggc ggatgccggg cggcagtccg gcggaggcgg ttggtcagtt tgtcgacaga
      241 gtcctcactg acctcgccaa agaaggcgat cgtcacgtgc cactgttctg taggcgtcca
      301 ccgcagccca ggcgcacgca agcgcaccgg ggcgatagcg ctagccagat cgtcgacaat
      361 ctccgccggc ggtgtcaacg ccacgaacag ccgcaccact ccatcctcac cccccttagc
      421 gcgttaagga gccatatcgg ggttgtcggg gcaccgagag caccgtcatg gagccatatc
      481 gggatcagga tggtgcggag tgggttcggt attcggtggg gtcgaacttg cgggtggccc
      541 ggcggaagcg gcaggtgaac gtcggccaca aggtggtgtt gccgccgtgg gcgtcgagat
      601 accagctcgc gcagccgccg gagacccaca ctgtgtctgc catccggcgc tggagcgtct
      661 ggttgtaggc cacctgcgcc tccggccgca cctccacagc tgcggacccg gagcgcctca
      721 ggtagcgcaa ggcgtcgagg gtgtacgcca cttggaactc gatcatgtag atcaacgagg
      781 cgtgtccgag gccggcgttg gggccgacca gcatgaacag gttggggaat ccggcgatcg
      841 tcgtgccccg gtgtcccgaa gatgatcaca tccgcgctgg agcaggtgcc atccgcagcc
      901 tgcacccaat ccgcgccgac ccgcgcgagc gccgaggtga caacctgaac gttcggcttg
      961 gtcaagctcg ggagatagtc gttggagatc aggatgcgct tgcacccgat ggtgtagtca
     1021 ggggtcagct cggtccgcag cgcgggtgcg ccgcgaagcc gggcaccaag gattcccggc
     1081 cacagtagat ccccgctcgt accaggagct gaaggacagg tgatacccgg tacaacttct
     1141 gctcaaggtc accgatgtcc cgctcgcccc gcggcatgat ccaggatgga gtgcgctgga
     1201 agagagtgag cgtcctaacc tcgggctgaa ttcataagac gaactggata gccgaggcgc
     1261 cggtgccgat caccgccacc cgccgatcgc gaaggtcata gtcgggcgca cagcgagtgg
     1321 agtgaaacac ctcaccccgg aacgaggcca atccgggaat gtccggaata ttaggttcgg
     1381 cgagcgctcc ggccccgtga tcaggacgtc acaggccaac ttgccgtagt cggtgtgcac
     1441 ctaccagcgg cgccgggaat gatcccacgt ggcctcgagt acatcatggt gagaacggat
     1501 atagctaccg aggtcgtagc ggtcgacgca gtggcgcagg tagtcccaga tctcctgctg
     1561 tccggagaag ctgcggctcc aggagggttt agttcgaagg agaacgagta cagctgggag
     1621 ggaacatcgc aggcacagcc cggatagcgg ttgtctcgcc aggtgccgcc cacttccgcg
     1681 gcccgttcca gcaggacgaa atcagtcatt ccgtgctgat ggagtcgaat ccccatgcca
     1741 agcccggcga aacctgtacc gatgatgatg acgtggtgat ggtgggtctt ctccgccaca
     1801 ccgttcacga ctttgctcta tctcgcggcg ttaccgcaag gtaaccctac cgttgagtag
     1861 gtatgggcat cgaacggact gacggagata cctgtgccgt ccggcggacc ggcttaccgc
     1921 tggtcgctgc atccgtgcta ttgacaaccg aactctgccg accagtcagc gcgggagaac
     1981 caccgtcgaa cgcggcagcg gtcgcgcctc cgtcatcgaa cggcaagctc ctggtaggcc
     2041 ttaatcaagc gcgaatagac gtgatccgcg agaccgatgg gagaggcgtc cccgtggcac
     2101 ccgaatcgct gatcgaggct cgtggcaccg tgctcggttc ccagctctgg accgccgaac
     2161 ccgttgaggt actgggcccg cccgatcacc tagcccacgc cgcagtcgac gctttaggct
     2221 gggacggggt ggtgttgccg ccgatggtgc tgctcgggcg ccgcgtggtg gccgttgtca
     2281 acctcattgc ggacgtgcat cagcgccgga tcagttccgg atggggcccg gtgaccgacc
     2341 gggtatctgt gtccacctgg gattggccgg aaatgcgaca cctcgtgccg gcacccgcag
     2401 tggaattgag cggcatcatc gcgccggccc ggcattggcg aaccggactc accggtgccg
     2461 cgccgtttac cgggttgtgc ccgactgctt tgctgctgcc cgcgcatata gcccggaacg
     2521 tcgagtgcct gacgcacgcg gagtattacg gccctacagt gctggctgcg gcagggccgc
     2581 acgacgtcga ccctgaagct gtcgacgtcg tgcatgcggg acgtagccgt gcagtcgcga
     2641 ccgcacagcc gaccaaaatc acccgctgga tctacgagat ggtctatgac cggctggtga
     2701 agctgcatta gagcgcacct ctgctgatcg gcagggccga atgcggtggg cgagggggga
     2761 gttgaacccc cacgtcctta cggacacacg gacctgaacc gtgcgcgtct gccattccgc
     2821 cactcgccca agtgaccgcg gaagcctagc atgcgccgcc cggatgcctg agccagcaga
     2881 cccgaaccgt tagccttccc agatacgatc gggacagccc cgctgcgaga ggaggctgcc
     2941 gtgggtaagg cgcagaggtt cgagcgtcgg ttgcagggta tggtcggcga cgcctttgcc
     3001 aggatcttcg gcggtagcgt ggtgccgcag gaggtggctc aggcgctcct acgcgaggct
     3061 gacgacaatg cgcgtccgct tgccgggggg cgggtgctcg cacctaaccg ctacaccgtg
     3121 aggcttggtg cggccgacca cgaccggctg gccggcgatg aacaacgagt gatccggatg
     3181 ctcaagagct gcatccggac tcatatcgcg gagcagggct gggatgtcta tggagacgtg
     3241 gtggtggccc tgaagctgtc tggggcgctg cacaccgggc agttccgcac cagctcgtcc
     3301 gtcgatcccg acacaccgca acctcgtaac gcaggagacc gatctatgag tcagcaaccg
     3361 ggcggcccgg ccgtcccgga ctacggtcag ccatctggtg agtttcagga ccagcggtac
     3421 gaccaaggcc caggctcgtc ccggaatttc ggcgggtacg cctacgacca gggtgccggc
     3481 taccagctgg gttacggtca aggcaatccc ggcgagcact atcagcagcc acccggccag
     3541 tacgacgagg cgggctacga tgaggcacag ccggcctacg gctatgacgg gtatggccag
     3601 gccgcggacc gcttgctttc ggcgtcgctc accctggatg acggctccga ccgctactac
     3661 gagctgaccg agggcaccat ggtggttggc cgcggccagg aagctcagtt ccggttgccg
     3721 gataccgggg tatcccggcg gcacctggag atcacttggg acggccggac cgcactgctc
     3781 accgacctcg gatccaccaa cggaacgacg gtcaacggca cgccggtgca gacctggcag
     3841 ctcgtcgacg gcgatgtggt gcgggttggt cagtcgcggc tggtcttccg gacccagggt
     3901 tgatcgccca gtatcgatcg cccagcattg attgcccagc attgattgcc caggggtgat
     3961 gacccgcccc aacaggtgat ggcacagatg aataacattg accaccacgc gacctagcag
     4021 agacgaaccg agtgtgccgg agctggtgct gcaactgacc agagcgggct tcctgctcct
     4081 gctctggtta ttcgtcgtcg ccgcgctacg catcgtccgc tccgacctgt tcgcggcgtc
     4141 cgggctgcgc gccagccttc cgatgtcccg gcgtagcgct cgagcggagc gcgaccgaac
     4201 accccgccag ctggtcgtca ccgcaggtgg cttggcgggt actcgtatct cactggatgg
     4261 caggcccatc ctgatcggcc gcgcggacga ctccactctg gtactcgatg acgattacgc
     4321 ctccacccgg cacgctcgcc tcggctttca gggcggcgac tggttcctgg aggatctggg
     4381 ctccaccaac ggcacctacc tggaccgagc taaggtcacc ggacctactc gggttcctct
     4441 tggagtcccc atccgcatcg gcaagacggt gatcgagcta cgcacatgac tctggtcctc
     4501 cgctacgcag ccaaaagcga ccgtggcctg gtccggcaga acaacgagga ctcggtctac
     4561 gcgggtcctc gcctgctggc cctggccgac gggatgggtg gccacgcggc gggagaggtg
     4621 gcatcgaaag cagtcatcgc cgcgttcgcg ccactggatg atgacgagcc cggcaacgac
     4681 ctgctggatc agctgcacga ggccaccatg gcgggcaacg ccgcgatcag cgatctggtc
     4741 cgggaggacc ccgaacgcga gggcatgggt accacgctca ctgcggttct cttcggcggt
     4801 aacaagatcg gcttggccca cgtcggcgac tcgcgcgcct acctgctgcg cgatggcgtg
     4861 ttcagccaga tcacccggga cgacacattc gtccaatcgc tgatcgacga gggtcggatc
     4921 tcggcgcacg aggccagcca ccatccgcag cgttccctac tgctcaaggc actcaccggg
     4981 caagaggtgg agccttcgct gaccgtccgg gaggctcgcg caggagaccg ctacctgctg
     5041 tgctcagatg ggctctccga cgtggtcagt gcggagaacc tcgccgaggg gttgaccatg
     5101 gccgatccac aggcgtgtgc cgaccgcctc atcgagctgg ctctccgggg cggcggcccg
     5161 gacaacatca cctgcgtcgt ggccgacgtg gtggacgtcg agtacggcga ggacgcaccc
     5221 atcatcgccg gggcggcagg cgatggcgtc gagcaacccc agcccgactc ggcagcttcc
     5281 cgggccgcga cgaccacgct gccacgcccg accgagccca agcgagtcga gcccgcgccg
     5341 cccgacccgc aactgcgcca gcgcaagcga aagcgagccc tgatcggtct cgcagcgctc
     5401 gccacgctga tcgctggagt caccgcgatc ggttcgatcc tggtgctcgg ccagtactac
     5461 gtgggggcgg cccgtgacgg cgaagtggcc gtcttccagg gcgttcgggg cgaattcctc
     5521 ggcctgccgc tgcattcgtg ggcggaaggt agctgccggg atgcagcccg cggttgtgag
     5581 acggtcttcc tgcgggacct gcaaccgtat gcccggacca acgtcagccg cggcatgatc
     5641 agcaacaacg ggttgggcgg cgcgcgcgag attatcggtc ggctgcgcac caacgacctg
     5701 ctgccactgt gccctcagaa cgtcgcgggc cctcagagta tcgggggtcc tcagaacgcc
     5761 gcgggcacct ctccggccga ggtgccgacg tcagtatctc cttttgccac agagaccagc
     5821 gctcccgcca ttcccacgac caccggtacg ccgctgccgg agaaaccctc ggaacccgga
     5881 gtggactgcc ggacggtggg ttgatggtcg cctctgttcc catccaggac acgggctcac
     5941 agcccgcggt ctcgccgccc accaaacgcg gcctggagct gatcatgctg gcgttcgccg
     6001 ccgtcgtggt caccgccgcg ctggtgctgg tcgagctcaa tcagccacag ggactcaccc
     6061 gatccgtgct ttatgacggg gccgcatacc tcgccttgtt cagcgctgca catattgcgg
     6121 tgcgatggct ggcgccctac gccgatccgt tgatcctgcc ctgcgtcgcg ttgctcaatg
     6181 ggttgggact ggtggtcatc caccggctcg acctggccga tgcggcatca gccacctcta
     6241 ttggcgctgc ggtgccggcg ggcaacgtgc cccaccagat cgcgtggacc gcgctgggcc
     6301 tggggttctt cgtggcggtg ctcgcgctgg tccgcgacca ccggatgctg gcccgctacg
     6361 gctacacctg cgggctggcc ggactggccg cgttggcact gcccggcc
//
LOCUS       DASVXZ010000839         3900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_597896, whole genome shotgun sequence.
ACCESSION   DASVXZ010000839 DASVXZ010000000
VERSION     DASVXZ010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3900
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597896"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            563..1806
                     /locus_tag="VF788_17810"
                     /pseudo
     CDS             563..1806
                     /locus_tag="VF788_17810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011689782.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(1909..3573)
                     /locus_tag="VF788_17815"
     CDS             complement(1909..3573)
                     /locus_tag="VF788_17815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015805204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEX8935992.1"
                     /translation="MSDEGELIAGRYRLVSRLGSGAMGVVWQARDERLHRIVAIKQLL
                     LPARLSDSEVEEASRRAMREGRITARLHHPHAIAVYDVAEHAGQPCLVMEYLASRSLA
                     AVLSTQGVLSPEEVASIGSQIASALTAAHQAGIVHRDIKPGNVLLAEDGTVKITDFGV
                     SHAVGDVTVTATGMLAGTPAYLAPEVAQGHSGGFSSDVFSLGATLYTALEGMPPFGIN
                     TNPIALLHQVASGEIIAPRRSGPLTPVLLRLLQRNPEQRPTMDQAHDALATLVTSLAG
                     HQAGHQEDLSAPAAPPPRHDRPVEPVPATQQTLIQAVPPGETITTVGPTGMDAAARRA
                     PAQGNHHGWPKRRTLLTGVLTALLLAAGVLVAVLISHANVTGANTTAPTPGGPAQSPQ
                     SLPAPPAPSTTTQAAPTSTSGGPAPSPHPLPAPPGPSSTTPVAPAIPAVPGSSQGTPE
                     QLARTITDYYALVPGNLPAAWDRLTASYQQNHAGGYTGYQNFWNPVQRVTASDVSATQ
                     GNIVDATIDYFFKDGRVVEERTSYRLVAEDSLWKIDSSTVSTSQTK"
BASE COUNT          654 a         1285 c         1277 g          684 t
ORIGIN      
        1 gcagaccggg gactagtggg ccaggtcgtt catcgcgagc ggtgctccac ctggcccact
       61 agcccccggc ccgcttcgaa gcaagctcgc cgacgcgacg ggatacccac acccggccgc
      121 cgtcctgcag caagccaaca ccccgcatgc aaccgctctg ggcctcgcgt gccccccacg
      181 tgcccgtaac caggatcacc agcggtcaat cacggtcact tctgtcctct gttactggac
      241 atccgcaggt caacattcgc tggtcaggac catgatccat ccccgatctt ccaagctggt
      301 catgtgggtt tgcttcccgt tttctggtca gtagccgggg ccgctgcgct gggccgctgt
      361 ggaggcggga aaaatggggc cgcgttcgtc cgggacgccg atgtatctgt gatgccttgt
      421 gagctcgtgg agtcagtatg gcgctggggc caccgacagg aactgtcgat tgttgccgtg
      481 agcacgcgga ccagactctt tggccctgtg gtccctccgg gcgggcgcgt gtcagggtct
      541 gccggttcgt ctggggggat tcatggaact gttgcatgag cggtgcgcgg ggctggatat
      601 cggcaagaac gatcttaagg cgtgcgtgcg cactcccaat cccagtggga agcggtcccg
      661 ccggcaggag atccgtacgt ttgcgaccac gactaatgcg ttgctggagc tgcgcgattg
      721 gctggtcgcc gagaaggtga cgctggtggt gttggaggcg acggggatta ctggcggggc
      781 gcgttttacc tgctggagga ctgtctgaat gtgatactgg tcaacgccgc gcacgctaag
      841 ggcctgccgg gacgtaagac cgatgtctct gatgctgcgt ggctgtgcca gatgggtgag
      901 tgcgggctgc tgcgggcctc gttcgtgccc ccggagccga tccggcagct gcgcgacctc
      961 acccggtatc gcaccaccct ggctgccgag cgcacccggg aagcccagcg gctggaaaag
     1021 gaactcgaag acgccgggat caaactctcc acggtggcca ccgacattct cggggtctcg
     1081 gggcgggcca tgctgaccgc gctcatcgag ggagaacgcg atgtgcacgt gcgggccgag
     1141 atggccagag cgaggatgcg ccccaagatc ccccagctgg tggaggcatt gaccgggaac
     1201 ttcggtgagc accacgcgtt tttgtgccga ttgcacctgg agcgcattga ccaactctcc
     1261 gccacgatcc tgaagctctc ggcacggatc gaggaggcga tgcgcccttt cgcccgccag
     1321 cttgagcacc tgaccaccat ccccggcgtc ggccagacca ccgcggaggt catcatcgcc
     1381 gaaaccggca ccgacatgac ccggttccgc accgcggggc atctagcctc ctgggccggg
     1441 gtctgccccg gccaccacga atccgccggc aaacgcaagt ccggcaagac ccggcacggc
     1501 aaccgatggc tcggggccgc cttgggtacc gcagcgatgg ccgcctcccg gaccaagaac
     1561 aagacctatc tcggcgcccg ctaccagcgc ctggtcccac ggctggggaa aaagaaagca
     1621 atcgtcgcca tcgagcactc gatcctgaca gcggtctggc acatgctcac ccacgacgtc
     1681 gactaccacg acctgggcgg ggactactac acccgccgcg acccccaacg cgccctgcac
     1741 cgcatcaccc gccaagccaa cgccctgggc ttcaccgtcc gcttcgaccc catccaggcc
     1801 gcctgaccca cccccaccca ccaccgcgac agcagtgcca ctcaagtcat gacctgcgac
     1861 tcacctgttg ttttcggacc agcgtgatcg gttgtgtgtt tagctgcgtt acttggtttg
     1921 gctagtgctc actgtggagc tgtcgatttt ccacagactg tcctcggcga cgagccggta
     1981 gctggtccgc tcctcgacaa ctctgccgtc tttgaagaag tagtcaatgg tcgcatcgac
     2041 tatgttgcct tgtgtcgcgg agacgtcaga ggctgtgacc cgctgcacgg ggttccagaa
     2101 gttttgatat ccggtgtagc ctccggcgtg gttttgctgg tagctggccg tgagccggtc
     2161 ccaggccgct ggcagatttc ccggcaccaa cgcgtaatag tccgtaatcg tcctcgccag
     2221 ttgctccggc gtgccttgtg aactacccgg gaccgccggg atggcgggcg ctaccggcgt
     2281 cgtgctgctg ggtcctggtg gggcgggaag ggggtgcggg ctgggcgcag ggccgcccga
     2341 ggtgctcgtg ggagctgcct gtgtcgtggt gctcggtgct ggtggggcgg gaagggattg
     2401 cgggctttgc gcagggccgc ccggcgtggg ggcggtagtg ttagcgccgg tgacgttggc
     2461 atgactgatc agcacggcca ccaggacacc ggcagccagc aacagggccg tcaggacgcc
     2521 agtgagcagt gtccgccgct ttggccatcc gtggtgattg ccctgggccg gcgctcgacg
     2581 ggctgcggcg tccattccgg ttggccccac cgtggtgatc gtttcccccg gtgggaccgc
     2641 ctggatgagt gtctgctgcg ttgcagggac cggttcgacg ggtcggtcgt gtcggggtgg
     2701 tggagctgcg ggagcggaca ggtcttcttg gtgtcccgct tggtgtcccg caaggctggt
     2761 gaccagcgtg gccagcgcgt cgtgggcctg gtccatggtg gggcgttgtt cgggattgcg
     2821 ctgcaacagt cgcaacagca ccggggtcag cggacccgac cgtcggggcg caatgatctc
     2881 gcccgaggcc acctggtgca gcagggcaat cgggttggtg ttgattccaa acggcggcat
     2941 gccctccagc gcggtgtaga gcgtggcgcc cagggagaac acgtccgagg agaagccacc
     3001 actatgcccc tgggcgacct ccggagccag gtaagctggc gtcccggcca gcatcccggt
     3061 ggcggtcacg gtgacatcgc ccacggcatg ggacacacca aagtcggtga tcttgaccgt
     3121 gccgtcctcg gcgagcagca cgttgcctgg cttgatgtcc cggtgcacaa tgcccgcctg
     3181 gtgcgcagcg gtcagcgccg aggcgatctg actgccgatg ctggcgactt cctcgggtga
     3241 gagcacacct tgcgtagaca gcaccgctgc caggctccgg gacgccagat actccataac
     3301 cagacacggt tgacccgcat gctcggccac gtcatagacc gcgatcgcgt gcggatggtg
     3361 caaccgagcg gtgatccgcc cctcccgcat cgcccgacgg ctggcctcct caacctcact
     3421 gtcgctcagc ctcgcgggca acaacaactg cttgatcgcg acgatgcggt gcagacgctc
     3481 gtctcgggcc tgccacacca cccccatcgc tccactgccc agacgcgaga ccaggcgata
     3541 gcgcccagca atcagctcac cctcatcact cactgccacc cccccgggga aacagacgcg
     3601 tgcttgccgt gcgtcgcgcg gtgccatctc aggctgacgt catccccggc actgacccca
     3661 ttgcctcaca gcaccctacg acgcccagga aaccggggcg taaaacacat gcctgaccca
     3721 gtcaccgcag agacgagccc gctgctaccg cccgtctcgg cgcggagctg ctcgaagcgc
     3781 agaacacaac ctgcctcagg tgtggactgt gcaggcccag gaggccgcga agatcaggcc
     3841 gtctccaggc cgtcagacgt cgggcagcag tgagaagcgg gaagaactac tgagatgtat
//
LOCUS       DASVXZ010000840         1807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1674109, whole genome shotgun sequence.
ACCESSION   DASVXZ010000840 DASVXZ010000000
VERSION     DASVXZ010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1674109"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..939)
                     /locus_tag="VF788_17820"
     CDS             complement(28..939)
                     /locus_tag="VF788_17820"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020630806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX8935993.1"
                     /translation="MTLPGLIAAGAVVWQPSLAGDVEVALIHRPRYDDWSLPKGKPHA
                     GETLPATAVREVVEETGCTVTLGPRLGCTRYPVSAGQKVAHYWVARPIGGDFRPSNEV
                     DELRWLPVPKALELLSHQHDRTLLTGLEARTAVTSAVLLVRHADAGDRESWQGDDELR
                     PLTVEGHRQAESLRAVLPLFGARRVYSASPLRCRQTVEGLAADLGVPISTEPWLSEEG
                     YASNPAADHTRLLEIAAEPGGPAVVCSQGGVIPDLLRNLPGSTGSELTDVPKKGSYWA
                     LFFASSSPTPPILLAADYYDDNALGGA"
     gene            complement(936..>1807)
                     /locus_tag="VF788_17825"
     CDS             complement(936..>1807)
                     /locus_tag="VF788_17825"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010236423.1"
                     /note="catalyzes the reversible transfer of the terminal
                     phosphate of ATP to form a long chain polyphosphate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEX8935994.1"
                     /translation="QVVALVEVKARFDEQANIRWARALERAGVHVVYGLMGLKTHCKT
                     ALVVRQEGSSIRRYCHIGTGNYNPKTARLYEDIGLFTAKPAVGADLTDLFNSLTGYAR
                     QTSYRSLLVAPYGVRRGIVERIEGEIDHVKAGHPSGIRIKVNSLVDEQVIDALYRAAL
                     AGVPVDIVVRGICALIPGRPGLSENIRVRSILGRFLEHSRIFHFGGADEHWIGSADMM
                     HRNLDRRVEVLVRVGDPVVTSELDAVLASALDPATRCWVLAADGSWSPSPSDGATVRD
                     HQVQEIHRHRRSE"
BASE COUNT          324 a          594 c          568 g          321 t
ORIGIN      
        1 gctcgctcag ctacctatct ctgcatatca tgcgccgccg agcgcgttgt cgtcgtagta
       61 gtcggcggcg aggagaatgg ggggtgtggg cgagctgctg gcgaagaaca gtgcccaata
      121 gctgcccttc ttgggcacgt cggtcagctc agaaccggtg gagccgggga ggttgcggag
      181 cagatcgggg atcaccccgc cctggctgca caccaccgct gggccgcccg gctcagccgc
      241 aatctcgagt agccgcgtgt ggtccgcggc cggattgctg gcgtatccct cctcggacaa
      301 ccacggttcg gtgctgattg gcactccgag gtccgcggcg aggccctcga cggtctgccg
      361 gcaccgcaac ggtgatgcgg aatacacccg ccgcgcgccg aacaacggca acacggcgcg
      421 cagactctcg gcttgccggt gaccttcgac ggtcagcgga cgcagctcat catcgccctg
      481 ccaggactcg cgatcaccgg cgtcggcgtg ccggaccagc agcacagcgc ttgtgacagc
      541 cgtccgagcc tccagcccag tcagcagcgt ccgatcgtgt tggtggctga gcagctcgag
      601 cgccttcggc acaggcagcc agcgcagctc gtccacttca ttgctgggac ggaagtcgcc
      661 gccgatgggg cgagccaccc agtagtgcgc caccttctga cccgcggaca ccgggtaacg
      721 ggtgcaaccc agccgggggc cgagggtgac ggtgcagccc gtttcctcta caacctcgcg
      781 gactgctgtg gccggcagtg tctccccagc atgcggtttt cctttgggaa gtgaccagtc
      841 gtcatagcgt ggccggtgaa tcagcgcgac ctcaacgtca ccagcgagtg agggctgcca
      901 cacgacggcg cccgcggcga tcagaccagg caaggtcatt cactcctgcg gtggcgatgg
      961 atctcctgca cttgatgatc acggacggtg gcgccgtctg acggggatgg gctccatgaa
     1021 ccgtcggctg ccaacaccca gcaccgggtc gctggatcca gcgccgaggc gagcaccgca
     1081 tccagctcgg aggtcacgac tgggtcgccc acccgtacca acacctccac ccggcggtcc
     1141 aggttgcggt gcatcatgtc cgcgctaccg atccaatgct cgtccgcacc cccgaaatga
     1201 aagatccgtg agtgctcgag aaagcggccg agtatggagc gtacccgaat gttctccgat
     1261 agacccggac gtcccggaat gagggcgcaa atgccgcgaa ccacgatatc gacgggtaca
     1321 ccagccagtg ctgcacggta taacgcgtcg atcacttgct cgtcgaccag agagttgacc
     1381 ttgatccgga tcccggacgg gtgacctgcc ttcacgtggt cgatctcacc ctcgatacgt
     1441 tcgacgattc cgcgccggac tccgtagggt gccaccagca agctgcggta ggaggtttgc
     1501 cgggcgtagc cggtcagcga attgaacagg tcggtcaggt cggctccgac tgcgggtttg
     1561 gcggtgaaca acccgatgtc ctcgtatagc cgagcagtct tcgggttgta gttaccggta
     1621 ccgatatggc aatacctccg aattgatgaa ccctcctggc gcacgaccag cgcagtcttg
     1681 caatgtgtct tcagtcccat cagcccatag accacgtgca ccccagcgcg ttccaacgct
     1741 cgggcccatc tgatgttggc ttgctcgtcg aagcgtgcct tgacttccac gagcgcgact
     1801 acttgtt
//
LOCUS       DASVXZ010000841         2180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_776945, whole genome shotgun sequence.
ACCESSION   DASVXZ010000841 DASVXZ010000000
VERSION     DASVXZ010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_776945"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VF788_17830"
     CDS             complement(<1..247)
                     /locus_tag="VF788_17830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017586504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8935995.1"
                     /translation="MRFTSEQRLDDGVLEREFTLGEVPGVLWTPGSAPAPLILSGHNG
                     GLHKRDPRLVARARHSAAEYGFAVAAIDHPGHGDRPRS"
     gene            604..834
                     /locus_tag="VF788_17835"
     CDS             604..834
                     /locus_tag="VF788_17835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8935996.1"
                     /translation="MSAARCVAPSVAPSAFAGFRFPPEVITLAVRWYLRFGLSYRDVE
                     ELLAERGINVDHAAIRRHRVLGGLINEYRRAV"
     gene            complement(1175..>2180)
                     /locus_tag="VF788_17840"
     CDS             complement(1175..>2180)
                     /locus_tag="VF788_17840"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX8935997.1"
                     /translation="WEVFHGFALPNGTLFDRLHAASVPWRIYAGDNFPQVRALAGINE
                     SDLRPYANFVADLASGSYPPAYTFVEPDYGHVTSDYRCGTSQHPLDDVTRGEQLIKCT
                     YEAIRHSPLWETSLLIITWDEHGGFYDHAAPPAAIPPGDTPLKRHNRHGFTFTQYGPR
                     VPAVVISPLIPKNLIDGRVHDHASIPATLEAIFGIPPLTARDSAANDLSILATLSRPR
                     TDTPPALPEPAASGVTGCPPVPACTPTTTLSNAIRGAALAPPRDHPGPTRPEQPIDKD
                     PNLAGFVHIALRRDLSITPPSEHQDRVARARSILTKADAHDYLQEVDRRLNTATPPLN
                     "
BASE COUNT          324 a          615 c          802 g          439 t
ORIGIN      
        1 cggaacgggg ccggtcaccg tgcccagggt ggtcgatggc ggccaccgcg aagccgtact
       61 ccgccgcgga gtgccgggcc cgggccacca gccgggggtc ccgcttgtgc aagccgccgt
      121 tgtggccgct taggatcagc ggggccggtg cggatccagg cgtccacagg acgccgggga
      181 cctcgccgag ggtgaattcg cgttcgagga cgccgtcgtc aaggcgctgt tcagaagtga
      241 atcgcatggt cgtgcctttc gggagtgctc ttgaacggcg ctcccggacg acctatcgcc
      301 agaccgtgac cccggagggg agcacccatg tcaatacggt cacgggtacc acctcctcgt
      361 tctctcgcac ggccttcgga aagctagcag tggtcgccgt ggtccgccaa cgggtttttg
      421 cggaggccta aaggccaagg ccgtgaagtt aagggcttcg ggcctgtgac gtgatcgcag
      481 cgtgcgaaat cggaacacta cgcagagcta cttggggtct catcgcagct ttcccgagtg
      541 gagggccgtt tagtgggcac tgttgcgtcc gtagatggga gcaacggttg tcatgcttgg
      601 ttgatgagcg ccgctcgctg tgtcgccccg tcggtcgcgc cctcggcgtt cgccgggttc
      661 cggtttccgc cggaggtgat caccttggcg gtgcgctggt atctacgctt cggactctcc
      721 taccgtgatg tggaagagct cttggccgag cggggcatca atgttgacca cgccgcgatc
      781 cgacgtcacc gagtcctcgg cggactgatc aacgagtacc ggcgagccgt ctagtcgatc
      841 cagggaagta cctggtcaaa ggctatacag cgagttttga caccgtacat gtcctgacct
      901 gcccgaaccg cccaggttct tcgacttcgc cgccctgccc atcaactgat cggcccctac
      961 cccgaacttc tgtagtaaca cgaccccgcg cccccctgtc cgcgtctacc cagctcagac
     1021 ccgtttccac atgatcgtgt gctcatcatc tgcggaagtc cggccagaac atgcctttgt
     1081 tcggtctttt gcttccttga tcgcgtcagc ggtccctgcc acccgtgggt tcgaagaggt
     1141 aagcgccgcg accggctcac gccacgatct tgtgtcagtt caagggtggg gtggcggtgt
     1201 tgagccgacg gtcgacttcc tggaggtagt cgtgggcatc ggccttggta aggatgcttc
     1261 tcgcgcgggc gacgcggtct tggtgctcgc ttggtggggt gatgctcagg tctcgccgga
     1321 gagcgatgtg gacgaacccg gccaggttgg gatctttgtc gatgggttgt tctggccggg
     1381 tgggcccagg gtggtcgcgg ggtggcgcta gggcagcgcc tcgtatggcg ttggacagtg
     1441 ttgtggtggg tgtacaggct ggtaccggcg ggcagccggt gacgccggag gccgctggtt
     1501 cggggagggc gggtggagtg tctgtcctgg ggcgggacag ggtcgccagg atgctgaggt
     1561 cgttggccgc gctgtcccga gccgtcagcg gcggaatgcc gaagatcgcc tccagggtgg
     1621 ccgggattga ggcgtggtcg tgtacgcggc cgtcgatgag gtttttcggg atgagcgggg
     1681 agatcaccac tgcggggacg cgggggccgt actgggtgaa ggtgaacccg tgcctgttgt
     1741 ggcgcttgag cggagtgtca ccgggtggga tggcggcggg tggtgcggcg tggtcgtaga
     1801 acccgccgtg ttcgtcccag gtgatgatga gcaggcttgt ctcccacagg ggtgagtggc
     1861 ggattgcctc gtaggtgcac ttgatcagtt gttctccgcg ggtgacgtcg tcaagggggt
     1921 gctgggaggt gccgcagcga tagtcgctgg tgacgtggcc atagtctggt tccacgaagg
     1981 tgtaggcagg cgggtaggaa ccgctggcga ggtcggcgac gaagttggcg tagggccgca
     2041 ggtcggattc gttgattccg gccagcgccc ggacttgggg gaagttgtcc ccggcgtaga
     2101 tccgccaggg cacgctggcg gcgtggaggc gatcgaagag tgtgccgttg ggcagcgcga
     2161 agccgtgaaa gacctcccac
//
LOCUS       DASVXZ010000842         5865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1130203, whole genome shotgun sequence.
ACCESSION   DASVXZ010000842 DASVXZ010000000
VERSION     DASVXZ010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5865
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1130203"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..154
                     /locus_tag="VF788_17845"
     CDS             <1..154
                     /locus_tag="VF788_17845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005150988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CGNR zinc finger domain-containing protein"
                     /protein_id="HEX8935998.1"
                     /translation="GSDCASRLGVCSAPRCDRVYVDASRNGTRRFCCTACQNRVKSAA
                     HRARTN"
     gene            complement(159..1256)
                     /locus_tag="VF788_17850"
     CDS             complement(159..1256)
                     /locus_tag="VF788_17850"
                     /inference="COORDINATES: protein motif:HMM:NF013847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HEX8935999.1"
                     /translation="MARTDVVGSLLRPPELLHARERWDRREIGPSEFKRIEDAAVDSV
                     IRLQEDAGLAVVTDGEMRRLSFQSQLTEAVEGFSDWDLDAFLWGDWYGAEVGDKHVKR
                     PRIAVLDRLRRRRFLSAEEFTFARGRTTRIVKVTLPSPSLFANFYDPERSRAAYPSLE
                     NFLADVAEILREEVDELVRLGCQYVQLDAPHYPLLLDPGYREFYASRGWPAQRWLDLG
                     VELDNIVFGSHPDLTCGFHLCRGNQESRWLVAGGYDWLAQRLFPRIAAQRLLLEYDDE
                     RSGGFEPLAMVPQGKTAVLGLVTTKTGRRETVDELETRIRAAARYQPLEHLALSPQCG
                     FATSVLGNAISVADQDAKLRTIVATAERVWG"
     gene            complement(1275..1649)
                     /locus_tag="VF788_17855"
     CDS             complement(1275..1649)
                     /locus_tag="VF788_17855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936000.1"
                     /translation="MDENRARRVADALRERGVDAHLVRAGEYQCGVRVSLPGGREAMW
                     DTDGTASLEAQVVRDGVLVGFVPVIEGSEDFDESQVVDAIARTDYDQPIARQLRTPPA
                     PGPALPPEGGLFRRFLDGFRYR"
     gene            1767..2252
                     /locus_tag="VF788_17860"
     CDS             1767..2252
                     /locus_tag="VF788_17860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019819008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEX8936001.1"
                     /translation="MTAIQDLVERNSFRAGTGPGPMPSPPSLHVAVVACMDARLDPHQ
                     LLGLRPGEAHVIRNAGGVVTDDVIRSLAVSQRKLGTTEVMLLHHTKCGMATFTDEDFW
                     AELQEVTGLRPTWAVETFRDPASDVRQSVERVQRSPFLASTTAVRGFVVDIDTGDLAE
                     V"
     gene            2268..3137
                     /locus_tag="VF788_17865"
     CDS             2268..3137
                     /locus_tag="VF788_17865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020664285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEX8936002.1"
                     /translation="MNPAQLIAWFDAQARELPWREPGTTPWGVLVSEVMLQQTPVHRV
                     APVWIEWMGRWPRPSSLAVEKPGTAVRAWGKLGYPRRALRLHSAATAIAAAHDDVVPA
                     DVDVLLGLPGIGAYTARAVAAFGYGHRVPVVDTNVRRVVARALHGMADSGPPSISRDL
                     SDVDSVLPDVQAARFCAALMELGAVVCTARRPRCAECPVAGECAWIRAGRPTGAAAGR
                     APQRFAGTDRQVRGLLLDVLRAAADPVSRAGLDVVWRDAPQRDRCLGSLLEDGLVEQT
                     CDGRFALPGEHTS"
     gene            3230..3547
                     /locus_tag="VF788_17870"
     CDS             3230..3547
                     /locus_tag="VF788_17870"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006238918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEX8936003.1"
                     /translation="MAVVKINAIEVPEGAGPELERRFADRHGSVDSAPGFLGFELLRP
                     IAGDKRYFVYTKWETEEHFQAWRNGPAMEAHSGARAKPVATGSSLLEFEVVQSAKPSP
                     ATS"
     gene            complement(3636..>5865)
                     /locus_tag="VF788_17875"
     CDS             complement(3636..>5865)
                     /locus_tag="VF788_17875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010308159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEX8936004.1"
                     /translation="SYIGTEHILLGLIREGEGVAAQVLQKLGADLNRVRQQVIQLLSG
                     YQGKEPAESGSGRGEGTPSSSLVLDQFGRNLTASAREGKLDPVIGRGKEIERVMQVLS
                     RRTKNNPVLIGEAGVGKTAVVEGLAQNIVKGEVPETLKDKQLYTLDLGSLVAGSRYRG
                     DFEERLKKVLKEIRTRGDIILFIDEMHTLVGAGAAEGAIDAASILKPMLARGELQTIG
                     ATTLDEYRKYVEKDPALERRFQPIQVQEPGIDHTIEILKGLRDRYEAHHRVSITDSAL
                     VSAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDLRDFDEKIAAVRRDKES
                     AIDAQDFERAAKLRDSEKQLLIKKTEREKQWKAGDLDVVAEVDDEQIAEVLANWTGIP
                     VFKLTEAETTRLLRMEDEIHRRIIGQHEAVKAVSKAIRRTRAGLKDPKRPSGSFIFAG
                     PSGVGKTELSKALAEFLFGDDDALIQIDMGEFHDRYTASRLFGAPPGYVGYEEGGQLT
                     EKVRRKPFSVVLFDEIEKAHQEVYNTLLQVLEDGRLTDGQGRTVDFKNTVIIFTTNLG
                     TSDISKAVGLGFTVGNDETSNYERMKSKVNDEVKKHFRPEFLNRIDDTIVFHQLTEEE
                     IITMVDLMASRVEVQLRNKDMELELTTMAKRLLAKRGFDPVLGARPLRRTIQREIEDQ
                     LSEKILFGEVVPGQIVIVDVENWDGEGPAEDAQFVFRGAAKPPQVPDTPLVDLDSAAS
                     PD"
BASE COUNT          945 a         1954 c         1943 g         1023 t
ORIGIN      
        1 cggcagcgac tgcgcctccc gcctcggcgt ctgttccgcc ccccgatgcg accgcgtata
       61 cgtcgacgcc tcccgcaacg gcacgcgccg gttttgctgc accgcttgcc agaaccgcgt
      121 caaatccgcc gcccaccgag cccgcaccaa ctagatgatc atccccagac gcgctcggcg
      181 gtggccacaa tcgtccgcag cttggcgtcc tggtcggcta cggagatcgc gttgccgagg
      241 acggaagtcg cgaatccaca ctgcggcgac agcgcgaggt gctcgagggg ctggtagcgc
      301 gctgccgcac ggattcgtgt ctcgagctca tcaacggtct ctcgccgtcc ggtcttggtc
      361 gtgacgagtc ccaggacggc ggtcttgccc tgcggcacca tagccagcgg ctcgaatccg
      421 ccagagcgct cgtcgtcgta ctcgagaagg agccgctgcg ccgctatgcg ggggaacagg
      481 cgctgcgcca gccagtcgta accgcctgcg accagccagc ggctttcttg atttccacgg
      541 cagagatgga agccgcaggt gaggtcagga tgggatccga agacgatgtt gtccagctcg
      601 acgccgaggt cgagccagcg ctgcgccggc cagcctctgc tcgcatagaa ctcgcgatag
      661 ccgggatcga ggagcaacgg gtagtgggga gcgtcgagct ggacatattg gcaaccgagc
      721 cggacgagtt cgtcgacctc ctcacgcagg atctccgcga catcggccag aaagttttcc
      781 aaactgggat aagcggcgcg cgagcgttcc gggtcataga agttggcgaa caggctggga
      841 ctcgggaggg tgactttgac gatccgcgtc gtccttccgc gcgcgaaggt gaactcctcg
      901 gcggagagga agcgacggcg gcgcaaccgg tcgaggacag cgatccgtgg gcgcttgaca
      961 tgcttgtcgc ccacctcggc gccgtaccag tcgccccaca ggaacgcgtc gagatcccag
     1021 tcgctgaagc cctcgaccgc ctcggtgagt tggctctgga acgacaggcg gcgcatctcg
     1081 ccgtccgtga ccacggcaag tcccgcgtct tcctgcaggc ggatcaccga atcgaccgcg
     1141 gcatcctcga tgcgcttgaa ctcggacgga ccgatctcgc gtcggtccca gcgctcccgg
     1201 gcgtggagca gctcgggcgg ccggagaagg ctgccgacta cgtcggtacg cgccaccaac
     1261 acggcgccag gaaactaccg gtaccgaaag ccgtcaagga aacggcggaa cagcccgccc
     1321 tcgggcggca gcgctggacc gggtgctggc ggggtgcgaa gctggcgcgc gatcggctgg
     1381 tcgtagtcag tcctggcgat cgcgtcaacc acctgggact cgtcgaagtc ttcggagccc
     1441 tcaataacgg gaacgaagcc gacgaggaca ccgtcgcgca cgacttgtgc ttcaaggctc
     1501 gctgtgccgt cggtgtccca catcgcctct cgaccgccag gaagcgatac gcgcaccccg
     1561 cactggtact cgccggccct caccagatgt gcgtccacac cgcgctcgcg cagcgcgtcg
     1621 gcgacccggc gcgccctgtt ctcgtccatg cctgaaactt acctgccgcc accgcgctga
     1681 agtgatgccc gctgaatgcg ggaggtccgg ctgcggttgg cctaggatcc gcggcgggag
     1741 tgcagcacgc agcgaaggag acgcccgtga ccgcgataca ggacctggtg gagcgcaact
     1801 cattccgcgc aggtaccggg cctggcccga tgccttctcc accgagcctg cacgtggcgg
     1861 tggtggcctg catggacgcc cgactcgacc ctcatcagtt gctggggctg cggccggggg
     1921 aggcgcacgt gatccggaac gcaggtggcg tcgtcaccga cgacgtcatc cgttccctgg
     1981 cggtcagcca gcggaagctg ggcaccaccg aggtgatgtt gttgcaccac accaaatgtg
     2041 ggatggcgac gttcaccgat gaggacttct gggcagagtt gcaggaggtc accggcctac
     2101 ggccgacctg ggcggtagag accttccggg accccgcatc cgacgtgcgg cagtcggtgg
     2161 aacgggtgca gcgcagcccg ttcctggcga gtaccaccgc ggtgcgcggc ttcgtcgtcg
     2221 atatcgacac cggcgatctc gccgaggtct gacctgcctg ccgaaccgtg aatcccgcac
     2281 aactgatcgc ctggttcgac gcccaggcgc gggaactgcc ttggcgtgag cctggcacca
     2341 cgccgtgggg cgtcctggtc agcgaggtga tgttgcaaca gaccccggtg catcgcgttg
     2401 ctccggtgtg gatcgagtgg atgggccgat ggcccagacc gtcgagtctg gccgtcgaga
     2461 agcccggtac cgccgtccgg gcctggggca aactcggcta ccctcgacga gcgctgcgct
     2521 tgcattcggc tgccaccgcc atcgccgcgg cgcatgacga cgtcgttccc gctgatgtgg
     2581 acgtgctgct cgggctgccc gggatcggcg cgtacaccgc ccgcgcagtg gcggccttcg
     2641 ggtacggcca ccgcgtgccg gtggtagata ccaatgtgcg ccgagtggtg gcccgcgcct
     2701 tgcacggcat ggctgactcc ggaccaccat ccatctcgcg tgatctgtcc gatgtggaca
     2761 gtgtgctgcc cgacgtgcag gccgcccggt tctgtgccgc gctgatggag ctcggcgctg
     2821 tcgtgtgcac cgctcgacgg ccgcgctgcg cggagtgccc ggtggctggc gagtgcgcct
     2881 ggatacgagc cggccggcca actggggcgg cggccgggcg ggccccgcag cgcttcgcgg
     2941 gcaccgaccg tcaggtgcgc ggcttactac tcgacgtcct gcgcgcggcg gccgatccgg
     3001 tgtcccgagc cggactggac gtggtgtggc gcgacgcacc ccagcgcgac cgctgcctcg
     3061 gctcgttgct ggaagacgga ctagtcgagc agacatgcga cggccgcttc gccctaccgg
     3121 gagagcacac cagctaatcc gttatggaga catattgggg tgaatggggg cgctgggacc
     3181 ccgatatgtc tccataacgg ggaagggtag gggcaagtag gctggcggta tggccgtcgt
     3241 gaagatcaac gcaattgagg tgccggaagg cgctggtccc gagttggaac gccggttcgc
     3301 ggatcgccac gggtcggtgg actcagcgcc aggttttctc ggtttcgagc tgctgcgccc
     3361 gatagccggg gacaaacggt acttcgtcta caccaagtgg gagaccgagg agcacttcca
     3421 ggcctggcgc aatggcccgg cgatggaggc acactccggt gcccgagcca aaccggtcgc
     3481 cactggctcc tccctattgg agttcgaagt agtgcagtcc gctaagccat cgcccgcaac
     3541 ctcctgacct accggcagca gagcgggttg tccgggcagt tctgtgcccg ccattcttgt
     3601 acagaatggc gggcacaggg tcggataaag ccggtctagt ccggactggc ggcactgtcc
     3661 aggtcgacca ggggtgtgtc aggcacctgc ggcggctttg ccgcgccgcg gaagacaaac
     3721 tgagcgtcct ccgccggacc ctcgccgtcc cagttctcga cgtcgacgat gacgatctgc
     3781 ccgggcacga cctcgccgaa cagaatcttc tccgacagct ggtcctcgat ctcgcgctgg
     3841 atggtccggc gcagcggccg ggcacccaac accggatcga atcctcgctt ggccagcagt
     3901 cgcttggcca tggtggtgag ctccagctcc atgtccttgt tgcgcagctg aacctcgacc
     3961 cgcgaggcca tcaggtccac catcgtgatg atctcttcct cagtgagctg atggaagacg
     4021 atcgtgtcat cgatccggtt gaggaactcc ggccggaagt gcttcttgac ctcgtcgttg
     4081 accttgctct tcatccgctc gtaattcgag gtctcgtcat tgcccacggt gaagcccaga
     4141 cccacggcct tggaaatgtc cgaggtcccc aggttggtgg tgaagatgat cacggtattc
     4201 ttgaagtcca ccgtacggcc ctgaccatcg gtcaaccggc catcctccag cacctgcaac
     4261 agcgtgttgt acacctcctg gtgcgccttc tcaatctcat cgaagagcac cactgagaac
     4321 ggcttgcgac ggaccttctc ggtgagctgg ccaccttcct cgtaaccaac gtaaccggga
     4381 ggggcaccga agagccggga cgcggtgtag cggtcgtgga actcacccat gtcgatctgg
     4441 atgagcgcgt cgtcgtcccc gaacaggaac tccgccaagg ccttggaaag ctcggtctta
     4501 cccacgccgg aggggccggc gaaaatgaac gagccggagg gccgcttagg gtccttcaga
     4561 cccgcccggg tgcggcggat cgccttggag acggccttga ccgcctcgtg ctggccgatg
     4621 atccgccggt ggatctcgtc ctccatgcgc agcaggcggg tggtctcggc ctcggtgagc
     4681 ttgaacaccg ggatgccggt ccagttggcc agcacctcgg cgatctgctc gtcgtcaacc
     4741 tcggcgacga cgtcgaggtc gccggccttc cactgcttct cccgctcggt cttcttgatc
     4801 agtagctgct tctccgagtc acgcagtttc gcggcgcgct cgaagtcctg ggcgtcgatg
     4861 gccgactcct tgtcccggcg caccgcggcg atcttctcgt cgaagtcgcg caggtccggc
     4921 ggagcggtca tccggcggat gcgcatccgc gcccccgcct cgtcaatcag gtcgatcgcc
     4981 ttgtccggca ggaaccggtc gttgatgtag cggtcggcca gggtggcggc cgacaccagc
     5041 gcgctgtcgg tgatggatac ccggtggtgc gcctcgtagc ggtcccgcag acccttgagg
     5101 atctcgatgg tgtgatcgat acctggctct tgcacctgga tcggctggaa ccgacgctcc
     5161 aacgcggggt ccttctccac gtacttgcgg tactcgtcca gagtggtggc gccgatggtc
     5221 tgcagctcgc cccgggccag catcggcttg aggatggacg cagcgtcgat cgcaccttcc
     5281 gcggcaccgg ccccgaccag ggtgtgcatc tcgtcgatga acaggatgat gtctccgcgg
     5341 gtgcggatct ccttgagcac cttcttcagg cgctcctcga agtcaccgcg gtagcgggaa
     5401 ccagccacca gcgagcccag gtccagcgtg taaagctgct tgtccttgag cgtctcgggc
     5461 acttcgccct tgacgatgtt ctgtgcgagt ccctcgacga cggcggtctt gccgacgccg
     5521 gcttcgccga tgagcaccgg gttgttcttg gtgcgccggg agagcacctg catgacccgc
     5581 tcgatctcct tgccgcgccc gatcaccgga tccagcttgc cctcccgggc actggcggtg
     5641 aggttgcggc cgaactggtc gagcaccagc gacgacgacg gggtgccttc accccggccc
     5701 gagccggact ccgcgggctc cttgccctgg tacccgctca gcagctggat gacctgctgg
     5761 cggacgcggt tcaggtccgc gccgagcttc tgcagcacct gcgccgcgac accctcgccc
     5821 tcgcggatca gccccagcag gatgtgctcg gtgccgatgt aggag
//
LOCUS       DASVXZ010000843         2094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_598532, whole genome shotgun sequence.
ACCESSION   DASVXZ010000843 DASVXZ010000000
VERSION     DASVXZ010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598532"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1238
                     /locus_tag="VF788_17880"
     CDS             <1..1238
                     /locus_tag="VF788_17880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8936005.1"
                     /translation="LGGADFDEAVFTHVQSVLSAHQDGAQWDALDTEDPNVLSGLARL
                     RRECIEAKEALSSDTDVSIPVLLPGVSAHVRLVRGEFEDMIRQALEDTVDSLSRAIDS
                     ARLSSADLDAVLLVGGSSRVPLVSQLVSARLGCPVVVDADPKTTIAMGAALSIAPQTR
                     PSPAVAQLLATPAADPERPANREQLPEQAPDRPSIIPAQRDAIEDNEPAEDDASLRRW
                     MITGRLRNIVGVGVLAGVLLVSLGVAAAGGGLPGFTDGSADTPLVSADPPSSAAAASG
                     HGGTAKASNAGSSNSAPSRSAAKVAGNITSAPGAVPAVNPPAPAGSGPNDGRVTPPVP
                     PASSPSAPDSKPVPGTGSGTAGPSTGTGTSPGTGTSPGTGTSPGTGTSPGTGTSPGTT
                     TGTSTDPGSGTDPAKVSPA"
     gene            complement(1569..>2094)
                     /locus_tag="VF788_17885"
     CDS             complement(1569..>2094)
                     /locus_tag="VF788_17885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013223133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEX8936006.1"
                     /translation="YIGGILHHAPSLLAFTNPMVNSYHRLVPGYEAPVNLVYSQRNRS
                     ACIRIPITGNNPKAKRIEFRCPDASGNPYLAFAAMMMAGLDGIKNAYEPAAPIDKDLY
                     ELPPEEAKDVAQVPASLGAVIDRLESDHDYLLEGGVFTPDLIETWIAIKRENEIDPLR
                     LRPHPFEFSLYYDV"
BASE COUNT          389 a          649 c          686 g          370 t
ORIGIN      
        1 agctcggcgg cgcagacttc gacgaagcgg tcttcaccca tgtgcagtcg gtgctcagtg
       61 cccatcaaga cggtgcccag tgggacgcgc tcgacaccga ggacccgaac gtgctcagcg
      121 gcttggcgcg gctgcggcgg gagtgcatcg aggccaagga ggcgttgtct tctgataccg
      181 acgtgtccat cccagtgctc ctcccgggag tcagcgccca cgtgcgcctg gtgcgtgggg
      241 agttcgagga catgatccgt caggctcttg aggacaccgt cgattcgcta tcccgggcta
      301 ttgattctgc ccgcttgagc agtgcggact tggacgctgt gctgctggtc ggcggatcct
      361 cgcgggtgcc gctggtgtcc caactggtgt ccgcgcggct cggctgccca gtggtggtgg
      421 acgccgatcc caagaccaca attgcgatgg gcgcggcgct gtcgatagcc ccgcagaccc
      481 gaccatctcc cgccgttgct cagctgctcg caacgcctgc tgccgatcct gagcgtcccg
      541 cgaaccgtga acagctcccg gagcaggcgc cggaccgccc gtcgatcatc cccgcccagc
      601 gcgacgccat cgaagacaat gagccggcgg aggatgacgc atccctgcga cgatggatga
      661 ttaccggacg acttcgcaac atcgtcggag ttggagtact cgccggggtg ctcctggtct
      721 ctcttggcgt cgccgcagcc ggcggcggcc ttcccgggtt cacggatggt tcagctgaca
      781 ccccgctggt cagcgccgac ccaccgagta gtgcagctgc ggcaagtggc cacggtggca
      841 cagccaaggc gagcaacgcg ggatcctcga attccgcccc cagccggagt gccgccaagg
      901 tggcaggcaa catcacctcc gcaccgggag cggtccccgc cgtgaaccca cccgcaccgg
      961 cgggttcagg tccgaatgac ggtcgtgtca cccctccggt tccccctgcg tcgtcacctt
     1021 cggcgccgga ttcaaaaccg gtaccaggca cgggttcagg tacagcaggt ccgagtacag
     1081 gcactggtac gagcccagga accgggacga gcccaggaac cggcacgagc ccaggaaccg
     1141 ggacaagccc aggaaccggg acaagcccag gtactactac cggcaccagt accgatccag
     1201 gaagcggcac agatccagcc aaagtctcgc cggcctgaat ggcgcctaat aaggcgcatc
     1261 ggccaccgat ggcgttatga agcgacgaac tgccatcacg tgattaccct agaatgaatc
     1321 ttgcaatggg acgacatagt gtcggcaggc aacggacgac cgtgtctccg agatgcttca
     1381 accgcgggtc cgcggtgtcg cgccttggat caacatagag gcgacgaggg gtcaatcgtt
     1441 tcatctgggg tgatgagcac ttacccaatg gcctcgcctt taaaataagc gctgacgatc
     1501 cgatgctggg ccgcggccca gcatcggatg ctccgctgtg aagcggttgg cggtttaagc
     1561 cgtatggatc agacgtcgta gtagagggaa aattcgaagg ggtgtgggcg caggcgtagt
     1621 gggtcaatct cgttttcgcg cttgatggcg atccaggtct cgatgagatc tggggtgaag
     1681 acaccaccct cgagaagata atcgtggtcc gactcaaggc ggtcaatcac cgcgcccaag
     1741 cttgccggca cctgcgcgac gtccttggcc tcctcgggag gaagctcgta gaggtccttg
     1801 tcgatggggg cagcgggctc gtaggcattc ttgatgccgt ccaaccccgc catcatcatc
     1861 gcggcgaagg caaggtaggg gttgcctgag gcgtccgggc agcggaactc gatgcgcttg
     1921 gccttcgggt tattgccggt gatcgggatg cgaatgcagg ctgatcggtt ccgctgtgag
     1981 tacaccaggt tcactggcgc ttcgtagccg ggcaccaggc ggtggtatga attcaccatc
     2041 gggttggtga acgccagcag cgatggtgcg tgatgcagga tgccgccgat gtag
//
LOCUS       DASVXZ010000844         2351 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1674669, whole genome shotgun sequence.
ACCESSION   DASVXZ010000844 DASVXZ010000000
VERSION     DASVXZ010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1674669"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(199..1497)
                     /locus_tag="VF788_17890"
     CDS             complement(199..1497)
                     /locus_tag="VF788_17890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936007.1"
                     /translation="MVRFDTGEGVVLEEDSQDGEIIARVAALDIGKAELVCCVRVPHE
                     GKPGRRLQEVATYSTMTGSLLVVSDHLRSLGVGRVVMEATSDYWKSVFYLLEAQGHEV
                     WLVNAKDVKHLPGRPKTDKLDAVWLCKVAERQMIRPSFVPPPQIRRLRDVSRYRIDLV
                     GVRTAEKQRVEKLLEDAQIKLSVVASDIFGVSGREMMAALVGGQTNPKVLARLARGQL
                     RAKIGALEEAFTGYFTDHHRFLLAKMLARIDALDADIAELDATLGELIAPYAPAVDKL
                     DEIPGVGTTAARVIIAEVGVDMSRFPTPAHLASWARFAPGVKESAGKNKGKGTTGHGN
                     RYLARVLGEAAVSAGKTNTFLGERYRRLARRRGKKRAIVALGRSILVIVWHLLSDPQA
                     RFHDLGPDFYDTRIGPERKKRNHIRQLEALGYTVTLEPTA"
BASE COUNT          434 a          783 c          736 g          398 t
ORIGIN      
        1 gaggtgggga gctggtctgc tctacaccat cgatctggcc gcaacccggg cagctctcgt
       61 ggtcagctgg cgcggtgctc accgctcgcc ccgcagcact cgctgcacgc tctgatccga
      121 aaatcaagcc ggggacgggc gaacggaacc accggctcgg cgtgactgtg tcgtggagcc
      181 gggacgggga agccgccatc aggcggtggg ttcgagggtg accgtgtagc ccagtgcttc
      241 gagttggcgg atgtggttac gtttcttgcg ttccgggccg atgcgggtgt cgtagaaatc
      301 ggggcccagg tcatggaaac gggcctgggg atcggacagt aggtgccaga cgatgaccag
      361 gatggagcga ccgagggcaa cgatggctct ctttttgccg cggcgccggg cgaggcgccg
      421 gtagcgttcc ccgagaaagg tattggtctt gccggcggac acggccgcct caccgaggac
      481 gcgggccagg tagcggttac cgtgcccggt cgtgcccttg cccttgtttt tgcccgccga
      541 ttccttgacc ccgggggcga aacgggccca ggaggccaag tgcgccgggg tgggaaaccg
      601 ggacatgtcc accccgacct cagcgatgat cacccgagcc gcggtggtcc ccaccccggg
      661 gatctcatcg agtttgtcca ccgcgggggc gtaaggggca atcagttccc cgagggtggc
      721 atcgagctcg gcgatgtcgg cgtctagtgc atcgatccgg gccagcatct tggcgagcag
      781 aaaccggtgg tggtcggtga agtacccggt gaacgcctcc tccagggccc cgatcttggc
      841 acgcagctgg ccccgggcca gccgcgccag caccttgggg ttggtctggc cacccaccag
      901 cgcggccatc atctcccgcc ccgagacgcc gaagatgtca ctggccacca ctgagagttt
      961 gatctgggcg tcctccagca gcttctccac ccgctgcttc tccgcggtcc gcacccccac
     1021 cagatcgatt cgataccggc tcacatcacg caaccgacgg atctgcggcg gtggtacgaa
     1081 actcgggcgg atcatctgcc gttccgcgac cttgcacagc cagaccgcgt cgagcttgtc
     1141 cgtcttcggc cggcccggca ggtgcttgac atccttggca ttgaccagcc acacctcatg
     1201 tccctgggcc tccaacaaat agaacaccga tttccagtaa tcggaggtgg cctccatcac
     1261 cacccggcct acccccagcg accgcagatg atcagacacc accagcagcg agcccgtcat
     1321 cgtggaatag gtcgcaacct cctgcaaccg ccgcccgggc ttgccctcgt gcgggacccg
     1381 gacacagcag accagctcgg ccttgccgat atccagcgcc gccacccggg caatgatctc
     1441 cccatcctgt gaatcctcct ccagcacaac accctccccc gtgtcgaacc gaaccatcgg
     1501 cggctatccg cgggagctgc gaggggtcag gcgaatctga tccgcgtgct cgaagcaaca
     1561 ctgaacggcc cacagggcag ctcccagcgc ccgactcata gacgacctca aaccggatca
     1621 aggagcaacg acgtcagcgg acagccgacc cccattttca gcccggaacg ggcctcccgc
     1681 cagggatgtc ggggactcat aggacggacg cgaaccacca ggcaccacac catgatcaac
     1741 gaactggcgc cgagatcaac cagccacacc gcacaagagc tgaccagtta cgagctcagg
     1801 atcgtcgggc agccgcggca gagtcaccag gggggcttca ccgaggccgg gcaccgattc
     1861 atctgatggg cttggtggct gcggctccgc tcgtagcgag taaccgataa acgaggggac
     1921 ggcgacggca tccggtgctg gaaggaccgg cggccatgcc gtgatacgaa accgtggctc
     1981 ttcgcccctc gccatgaggc cagtctgtgt gagacgttat gtccagtcaa gatacaacgc
     2041 cgcctctttg gaggggtagt cgtggaccgc atcgcctcgc gatccgcgac cgtggatctc
     2101 cagacggccc ccactcttgt cgctgtcggg atcgtgctcg cagtggtgat cttgtcggtt
     2161 gccgtagcga ttgtgatcgt gcgtggttcg cgagcagcga aggaaccgga ccgatacgcc
     2221 cttcaggtgc tcaacggact tccgaattgg ctatggccat ggcgattcag ggcatcgacc
     2281 ggtgaagaga cccgtaattc catcgcccct agagccgatg agtgacattc ctgtcgacgt
     2341 tttcccagag c
//
LOCUS       DASVXZ010000845         1988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_598741, whole genome shotgun sequence.
ACCESSION   DASVXZ010000845 DASVXZ010000000
VERSION     DASVXZ010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598741"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VF788_17895"
     CDS             <1..479
                     /locus_tag="VF788_17895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX8936008.1"
                     /translation="EDLVQETYLRAYGAFESFRAGTNLRAWLYRILTNTYINGYRKRQ
                     RQPVAQPSEEITDWQLAQAAQHTSSGLRSAEMDALDRLPDSDVKDALSALPEDFRMAV
                     YLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRKQLRDMLTGVARERGFLRDAEVAS"
     gene            476..841
                     /gene="rsrA"
                     /locus_tag="VF788_17900"
     CDS             476..841
                     /gene="rsrA"
                     /locus_tag="VF788_17900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018333287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mycothiol system anti-sigma-R factor"
                     /protein_id="HEX8936009.1"
                     /translation="MSCGQPHETDCHQVLAELWLFLDHECNRERRALLQRHLDECGPC
                     LEEYGLEEHLKALLARKCGGDHAPDALKQRLRESIRAIMMRQAVLGAEVTVQQAEDGT
                     IVEVSSTTVEAHAWLSTER"
     gene            1105..1320
                     /locus_tag="VF788_17905"
     CDS             1105..1320
                     /locus_tag="VF788_17905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding carrier protein"
                     /protein_id="HEX8936010.1"
                     /translation="MTEEIRAEMVANVWKIVVDEGDAVSDGDTLVILESMKMEIPVLS
                     EVDGTVAKLAVSEGDVVQQGDLIAVVE"
     gene            1363..>1988
                     /locus_tag="VF788_17910"
     CDS             1363..>1988
                     /locus_tag="VF788_17910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003059785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8936011.1"
                     /translation="MSTLSELLARNTRLPGAAVGHLQRIVAEWQLLADLAFADLLMWV
                     PLHVTAPPADFLCVAHVRPTTGPTVHPEDVVGTRATDPECRWLRQALVDGGILREEQP
                     CWLLGVPVRREVVPVRLGEQLIAVLGREANLAVPRVPSPLEIAYLGVAADLCQMLADG
                     TFPDTDTTPDLHGGPRAGDGLLRVDGRGMVIYASPNALSAYHRMGHAA"
BASE COUNT          336 a          580 c          704 g          368 t
ORIGIN      
        1 ccgaggacct cgtgcaggag acctacctgc gggcctacgg tgcgttcgag tcgttccgcg
       61 cgggtaccaa cttgcgggcc tggttgtacc gtattctcac caatacctac atcaacggct
      121 accgcaagcg gcagcgtcag ccggtggcgc aaccttccga ggagatcacc gactggcagc
      181 tcgcgcaggc agcacaacac acttcgtcgg gtctgcggtc ggcggagatg gatgcgctgg
      241 accggctgcc cgactccgac gtcaaagacg ccctgagcgc actgccggag gacttccgaa
      301 tggccgtcta cctggccgac gttgaaggct tcgcatacaa ggagatcgcc gagatcatgg
      361 gcaccccgat cgggactgtg atgtcgcggc tacaccgagg gcgcaagcaa ctgcgtgaca
      421 tgctcaccgg ggtggcccgc gagcgcggct tcctacgtga cgcggaggtc gcgtcatgag
      481 ctgtggacag ccgcatgaga ccgactgtca ccaggtactc gccgagctgt ggctattcct
      541 ggatcacgag tgcaaccgcg agcggcgtgc gttgctgcag cgccatctgg atgaatgcgg
      601 tccatgcctg gaggaatacg gcttggagga gcatctcaag gcgttgctgg cgcgcaagtg
      661 cggcggtgat cacgcgcccg acgcgctcaa acagcggctg cgcgagtcca tccgtgcgat
      721 catgatgcgg caggctgtgc tcggcgcgga agtgaccgtc cagcaagccg aggacggcac
      781 catcgtggag gtttcttcta ccaccgtcga ggcgcacgcc tggctgtcca ccgagcggtg
      841 agccgcgttg cgggcgcagg cgtgcgttac gacgggccag cagcagcggg atgtcaggtg
      901 ttcggacgct taccgtggtt ggcggcgttc ttcttcctgc tgcgcttctt gcgacccttc
      961 ttggacatgg tgccagccct tctgatgctt cagcggtgat atcgcggtcg tgagcgagtg
     1021 tgtcacagcg ggctgtgacg gcgccgagga gtgggtagcc caccgtggtt ggatggcagg
     1081 gcgcagcgtc aaggagggcg atccatgacc gaggagatca gagccgaaat ggtggccaac
     1141 gtgtggaaaa tcgtggtcga cgaaggcgat gcggtgtccg acggtgacac gctggtgatc
     1201 ttggagtcga tgaagatgga gatccccgtc ttgtccgagg tggatgggac agtcgcgaaa
     1261 ttagcggtct cggaaggcga tgtcgtgcag cagggggatc ttatcgccgt ggttgagtaa
     1321 cgttgtcgca ggcgggatca ggcggcgggg cggtgagccg caatgtcgac gctgagtgag
     1381 ttactcgctc ggaacacccg attgcccggc gcggcagtgg gtcacctgca gcggatcgtc
     1441 gccgaatggc agctactcgc tgatctggcc ttcgccgatc tgttgatgtg ggttccgttg
     1501 catgtcactg cgccgccggc ggacttcctc tgcgtcgccc atgtccggcc caccacgggg
     1561 cccacggtcc atcctgagga cgtggtcggg acccgagcta cggaccccga gtgtcgctgg
     1621 ctgcgccaag cattggtgga tggcggcatc ctgcgggaag aacagccctg ctggctactc
     1681 ggcgttccgg tgcgacgcga ggtggtaccg gtgcggctgg gtgagcaatt gatcgcggtg
     1741 ctgggccggg aggcgaatct ggcggttccg cgggttccca gcccgctgga gatcgcttac
     1801 ttgggtgtcg ctgcggatct gtgccagatg ctggccgatg gcaccttccc ggacaccgac
     1861 accactccgg acctgcacgg tggaccgcga gcaggggatg gtctgctccg ggttgacgga
     1921 cggggaatgg tgatctacgc gagtcccaac gcactgtcgg cctatcacag gatgggacac
     1981 gctgctga
//
LOCUS       DASVXZ010000846         3809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_957767, whole genome shotgun sequence.
ACCESSION   DASVXZ010000846 DASVXZ010000000
VERSION     DASVXZ010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3809
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_957767"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            674..946
                     /locus_tag="VF788_17915"
     CDS             674..946
                     /locus_tag="VF788_17915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936012.1"
                     /translation="MNHQHAAHDLAEAFGAFDRARLDRMSEAGRASQLAARQLLHDYV
                     HGLWADVEQAGERPAVGEKYQVIAAMRELTGALRTVAFEATYNPPA"
     gene            1504..1638
                     /locus_tag="VF788_17920"
     CDS             1504..1638
                     /locus_tag="VF788_17920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936013.1"
                     /translation="MTAGDPGYGHAGARTRLERGFCVGRPKVVGCGELVNAMLTDHAR
                     "
     gene            1917..2258
                     /locus_tag="VF788_17925"
     CDS             1917..2258
                     /locus_tag="VF788_17925"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX8936014.1"
                     /translation="MTVGVLAVLGALLDRPGTELYGLEIVRASGLEPGTIYPILQRLR
                     AAGWVSDRWEDGEPAHTEGRPPRRYYRLTTEGCARASHALHHGRDRSGLGRLLAPPRL
                     PAVPSSEAGPA"
     gene            2255..3049
                     /locus_tag="VF788_17930"
     CDS             2255..3049
                     /locus_tag="VF788_17930"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HEX8936015.1"
                     /translation="MSGHRALRSGDSEILGGIGLAGGWATAGFRSDALLAPRSLRWVR
                     GLLPGAEGKAWWAEVISCLAETPDAGERRQYVRSYRRSVPRLVWTSWTPQVRCMVPAP
                     VGDGYSSVKWKGTKVATLSPEEKFGIRYRNPGPRTIDQMYSLLLGIVVIVLGIIGFIQ
                     TGFTNYTEMTDHYILGLFQTNGYHNTVYILVGLLWLLGAFVLTPAGNQGLNIALAGVL
                     LLLAVLGFLGYWNLLSIPAGINGDNLLHLVVALATLIVGGGLLSRN"
BASE COUNT          705 a         1167 c         1238 g          699 t
ORIGIN      
        1 ggagccgatc acactggaag ccggggagac catccgcatg cccctccagc ctccgattca
       61 actcggcaac cacggcggac tactcaccct gctcaattct gcgggactca aagtcgacgg
      121 catcgcctac accgcccagc aagcccaaca ggaaggatgg accctcgtat tctgacctct
      181 cacgggcatc accagcccta ttcgacagcg gactgtaaat ccgtcggctg atgccttcca
      241 aggttcgaat ccttgacccg ccacgcagca aaaactgcag taaccagcac cagccgggtc
      301 gtggggtgac ctacgttgcg tccggcgctg tccgaccgtg tccggctgtt tgcgactgtc
      361 cgcgccctat acgggcccta gtgcccgggt tccgtgtccg gaggtcgtga tgagaccagc
      421 cacgatcggc agagagcagc ggatgggcat cgaggacccc cgagctgggc gtggccgagc
      481 agcagctccc cttaccgatc tagaccagga cgacgaggaa ctgccaacca gctggcacag
      541 agctgaccgg cctgctccga tcagacggct ggtgacgcct tgcggagcag actgctggcc
      601 atgcggtgcg gacaatgagt aaggaccctt gcttgtgtgg tgtcgtcgtc gggtcaggaa
      661 gaggatgcaa gccgtgaatc accaacacgc cgcgcacgac ctcgccgagg cgtttggcgc
      721 cttcgatcgg gcccgccttg accgaatgag cgaagccggt cgggcgagtc agctagccgc
      781 ccgccagcta ctccatgact atgtgcacgg gttatgggca gacgtcgagc aggccggaga
      841 gcgccccgcc gtgggagaga agtaccaagt gatcgcggcg atgcgggagc tgaccggggc
      901 gctgcggaca gtcgctttcg aggcgacgta caacccgcca gcgtaagtgg gctgaccact
      961 tggcgtcgaa ccgaaccgaa cctcgacatc agtgcagcag cgacgaccga gaaagacgca
     1021 aacttaactg atcacatagg accgcacaac caggacgacg agctgtttcg ctcggctggg
     1081 caagcagacg agcggcagct ggcaccagac gtcactgaca gtagaccaag cacacgaccg
     1141 tcccggaatt tgttccacaa cgctgttaac cacgaagtcg cggtgcacga ccgtccgact
     1201 atccagcgcg acgaggcgac gatgcggtca ttgcggtttc ccttcgacga agacgactgt
     1261 cgatagccga cgagtccgct ctctttgcac gcttggtcat cggtgaccaa ggagaaccgg
     1321 ctcagagaca agccgtctgc gacccgcttg agtttagcca gccaggaacg cgagtcagcc
     1381 atgggaacac ctgtctccct gcggccgcat ggccagcttg gaagctcggg gatggatcat
     1441 ggccctgacc agcaaaatgc tgacctgcgg acacctggcg acagaggaca ggattaaccg
     1501 tgattgaccg ctggtgaccc tggctacggg cacgcggggg cacgcacccg gctggaacgg
     1561 gggttctgcg ttgggcggcc gaaggtggtg ggctgcggtg agctggtgaa cgcgatgctc
     1621 accgatcatg cgcgctgaga gctcacgcac atccgtcggc gaagcacagg ccccgccact
     1681 agcccggtgg cagccctttg gctcagcgag gcccgaacta tcctggacgc tttcgtgggc
     1741 aattcgccga ggccgcaagt gcgggcagct aggcggtgat gccgtcctgg gtccgctccc
     1801 agtcgggcta cgacgctgtc ggtttcgtgg cggcagtcca ttctcgctta ctaacgctgc
     1861 tacctggaca tctatatact agctatgtag tgttagtttc tatggcgggt ttgcggatga
     1921 cggtgggtgt tctggcggtg ctgggggctc tgcttgatcg acccggcacc gagttgtatg
     1981 gattggagat cgtgcgcgcc agtggactgg agccgggcac gatctacccg atcctgcaac
     2041 ggctccgcgc ggctgggtgg gtcagtgacc gatgggaaga cggtgagccg gcacataccg
     2101 aaggccggcc cccgcggcgt tactaccggc tgaccacgga gggctgcgcc cgcgctagcc
     2161 acgccctgca ccacggtcgt gaccgcagtg gtttgggccg gttgctcgca ccgcctcgtt
     2221 tgcctgccgt tcccagcagc gaggcagggc cggcatgagc ggtcatcgtg cgctccgcag
     2281 cggggacagt gaaatcctcg gtggcattgg cctcgcaggg gggtgggcga cggcgggttt
     2341 tcgttcagat gccctgctgg cgccccggtc gctgcgctgg gtacgcggtc tgttgcccgg
     2401 cgcggagggc aaggcctggt gggctgaagt gatttcctgc ctggccgaga ctcccgatgc
     2461 cggcgaacgc cgccagtacg tgcgcagcta tcgcaggtcg gtgccgcggc tggtgtggac
     2521 cagttggacg cctcaggttc gttgtatggt gccggcgccg gtgggtgacg ggtatagcag
     2581 tgtcaagtgg aaggggacga aagtggcgac tcttagccca gaagagaagt ttgggatcag
     2641 gtaccggaat ccagggcccc ggacgatcga ccagatgtat tccctgcttc tcgggatcgt
     2701 ggtgatagtc ctggggatca tcggattcat tcagactggt ttcaccaact acaccgagat
     2761 gacagaccat tacattctcg ggctcttcca gacgaatggc taccacaaca ccgtatacat
     2821 tctcgttggg ctgttgtggc tgctgggagc gttcgtgctt accccggctg gcaatcaggg
     2881 actgaacatc gcgctcgccg gcgtattgct tctccttgcc gtgttgggct ttttaggcta
     2941 ctggaatttg ctgtccatcc cggctgggat taacggggac aacctcctgc acctggtggt
     3001 cgccctggca accctgatag tcggtggtgg cctgctcagc aggaactgat caacgctcca
     3061 ccgcataggc gaaagaggcg aaaccatcgg gccgtgttcc ctagccgcca gggaacacgg
     3121 cccgacagcg gcagccgagg ttgagcagtt tcggcaggcc ctgggtagac gtgaaggatc
     3181 attggtactc gtcgtgaaga gcagcggagc acggccggtc actgtgatgc tcctgccgta
     3241 gttgcaggca gcgcctcacc gctaccggca ggttgtccag ggcggggtct catctttggg
     3301 ctcaaggtcc atggatggca tgctcgtccg tagccgctga tgtaccaact gatttaggcc
     3361 agaggctctt tgttcgccgg ctccgaccga tgtaggtaca ctcccagagc acctgatcct
     3421 tggtcaggtg tttctcgacc aacctctccg caagaggcca cggatcttgc atgctgggcc
     3481 tggatggcat ccgtcggtct ggcgcagctc gaccacacgg tgccgcgggg gcaacatccc
     3541 accccaccgc cggccgaggt tgccatgctt gcccccaggg caccgtgtgg tagccctcgg
     3601 ggaggttgat gggatgccac gccgcgacca cctgccgggc ttgacgcttg tgtcagccat
     3661 cccggaggcc tgccggggtg cggggcggcg agcacccgca gttggttcca ctgaacctgg
     3721 cgtccggctc agcacaggac acgccaacct gctaacgagc gattagcagg aaccacttcc
     3781 gaacagtgcc ggtcatgacc gaacagttc
//
LOCUS       DASVXZ010000847         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1675487, whole genome shotgun sequence.
ACCESSION   DASVXZ010000847 DASVXZ010000000
VERSION     DASVXZ010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1675487"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..>1626)
                     /gene="ltrA"
                     /locus_tag="VF788_17935"
     CDS             complement(203..>1626)
                     /gene="ltrA"
                     /locus_tag="VF788_17935"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR04416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEX8936016.1"
                     /translation="NPPNKALAAEVGEERGLAKGNTASKTRPGHRAGQGAPSALDRVR
                     QRAREDKEARFTALLHHVDLARLRAAYWAIRPTAAPGVDGVTWEVYGQALDANLKDLH
                     ARVQGGGYRARPSRRAYIPKADGRQRPLGIASLEDKIVQRAVVEVLNAIYEADFLGFS
                     YGFRPGRKPHDALDALAAGVLRKKVNWVLDADIRDFFTKLDQGWLERFLEHRIADQRI
                     LRLIRKWLAAGVIENGEWSPTLEGSPQGASVSPLLANVYLHYVLDLWGQWWRNRHAHG
                     DVIIVRWADDFIVGFEYQEDAQRFLTALRERFARFGLELHPDKTRLIEFGRHAAWRRA
                     ARGLGKPETFDFLGFTHLCGESKKGRFWLRRITIAKRMRTKLREVNDQLKRRRHQPIP
                     EQGRWLASVVRGHRAYYAVPGNTDAVAAFRTQATRYWHKALRRRSQRTRINWERMNRL
                     ANRWLPPARVMHPFPEVRFAART"
BASE COUNT          259 a          571 c          489 g          307 t
ORIGIN      
        1 gccctgatgc ggtcggtgcc ggttgtagac cgctcatact cgcgcaggac atacagcaga
       61 tgccgctgat tcaagatcag tgtgcggtcc agcagttcgc ggcggcaggt ctgcacccag
      121 cgttgtcgcg gtagggaccg cccttgcggg cggccccccg cacagatccc agcgtgcggg
      181 actaccgcac tgggctcctg ccttaggttc tggcggcaaa gcgcacttcc gggaagggat
      241 gcatcacgcg ggccggtggt agccatcggt tcgcgaggcg gttcattcgc tcccagttga
      301 tgcgggtgcg ctggctgcga cgccgcagcg ccttgtgcca gtatcgcgtc gcctgggtgc
      361 gaaaggccgc taccgcgtcg gtgttgccgg gcacggcata gtaggcgcgg tgcccgcgca
      421 ccacgcttgc cagccatcgc ccctgctcgg ggatgggttg atgtcggcgt cgtttgagct
      481 ggtcgttgac ctcgcgtaac ttcgtccgca tccgcttcgc gatggtgatg cgccgcagcc
      541 agaaccgtcc cttcttcgac tctccgcata ggtgcgtgaa gccgaggaag tcgaacgtct
      601 caggtttccc gaggccccgt gccgctcgtc gccaggcggc atgccgtccg aactcgatca
      661 gccgggtctt gtcgggatgc agctccagtc cgaacctcgc gaaccgctcg cggagtgcgg
      721 tgaggaaccg ctgcgcatct tcttggtact cgaagcccac gatgaagtcg tctgcccagc
      781 gcacgatgat cacgtcgccg tgcgcgtggc ggtttctcca ccactggccc cacaggtcga
      841 ggacgtagtg taggtacacg ttggcgagca aaggtgagac cgatgccccc tgcggtgacc
      901 cttccaacgt cggcgaccac tccccgttct cgatgacccc cgcggccaac catttccgga
      961 tgagccgcag gatccgttga tctgcgattc ggtgctcaag aaacctttcc agccaacctt
     1021 gatcgagctt ggtgaaaaag tcgcggatat ccgcgtcaag cacccagttc accttcttcc
     1081 gcaagacccc ggccgccagt gcatccaacg catcatgcgg cttgcgcccc ggccggaacc
     1141 cataagagaa gcccaggaag tccgcctcgt aaatggcgtt gagtacctcg acgacggccc
     1201 gctggacgat cttgtcttcc agcgaggcaa tacccagcgg tcgctgccgc ccgtccgcct
     1261 tcgggatata cgccctgcgt gatggcctcg cccgatagcc gccgccctgc acccgggcat
     1321 gcagatcctt cagattcgca tccagagcct gcccgtagac ctcccacgtc accccgtcca
     1381 cccccggcgc agccgtcggg cgaatcgccc agtacgccgc ccgcaagcga gccagatcga
     1441 catggtgcag caacgcggtg aaccgtgcct ccttatcctc tcgtgctctt tggcgcacac
     1501 gatccagcgc actgggcgcg ccttgcccgg ccctgtgtcc gggacgcgtt ttgctggccg
     1561 tgttcccctt ggccaacccc ctttcctccc ccacctccgc agccaaagcc ttgttcggcg
     1621 ggttcg
//
LOCUS       DASVXZ010000848         2203 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1396997, whole genome shotgun sequence.
ACCESSION   DASVXZ010000848 DASVXZ010000000
VERSION     DASVXZ010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1396997"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..>2203
                     /locus_tag="VF788_17940"
     CDS             250..>2203
                     /locus_tag="VF788_17940"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HEX8936017.1"
                     /translation="MARIFISHAHADRAVADKVSDWLQTAGHEPFLYCNPREGISLGE
                     DWKQRLYRELREVDAVLGVVTKAFVSSEWCFAELGIADARGCRLIPLRVEVDVEHPLM
                     RNLQYVDYDANGGQARDRVLRTVRLLDGGGSWREGANPFPGLEPFTAEQREVFFGRAT
                     DSRRVANQLRSMEGAGRTGGLFALVGPSGCGKSSLLNAGVAPLLDGDPAWLRVPTLVP
                     GTDPLPELARRLAITAARRELDWSTSDVRSRLEVGTDGLRRVADDLLAASPGTHQQRL
                     LIMIDQAEELFTRTTSTARQQFVQLLNGAMSGLVQVVVVMRSEFLDDLRALPALAGTS
                     IEAHVVAPLDQEMLREVIERPAKVARLHLEDGLVAALVADTASGEALPLLAFTLRQLA
                     DGLIPGATLIQSRYDSLGRVRGALIRHADATLTDAIGVSGLSQSQLLAGLTRLVTVDD
                     TGRRARRRTMLPGPADPLRDALQVFVDRRLLLSDTDDNNQVWLTVVHEALLTEWRPLD
                     TATANIITALRAARIVEQAAAEWNSAGRPEHYLWNEKRLTATLVTLGIASDDNSHDQN
                     SAAYPVVALDEEAWSFLSATTERVSAAKERERRHRRAVTAGLLALLLVVTTVSIFAVY
                     QRNTAQTQRDTAILNQITLEADRQRGT"
BASE COUNT          404 a          653 c          734 g          412 t
ORIGIN      
        1 ccaggtgtag gtcgtcatgg tggcacgtca ccgctcgacc gctgctacca gcatcgtcac
       61 cacgcatgcc ttccatccga ctatgaggcg gcaagctttg acgctgacga cgaccagcga
      121 acttgcttgg ccgaagcgat cagtagtgac tgcggtctaa ttaggtgatt ccaggtgtaa
      181 cggagggaca cgcagacgcg aattgatgga cagcttagtc cagtcggtat ctatgggatg
      241 gaagtggccg tggcccgcat cttcatcagt catgcccatg cggaccgggc cgtcgccgac
      301 aaggtgtcgg attggctgca aacggctggc cacgagccct tcctctactg caaccctcgc
      361 gagggaatca gtctagggga ggattggaag cagcgcttgt accgggagct gcgtgaggtt
      421 gatgcggttc tcggcgtggt cacgaaggct tttgtgtcct cggagtggtg ctttgctgag
      481 ttgggaatcg cggatgcacg cggttgccgg ctcataccat tgcgggttga ggttgatgtg
      541 gaacacccgc tgatgcggaa tctgcaatat gtggactacg acgccaatgg tgggcaagct
      601 cgtgaccggg tgctgcgaac cgtgcgatta ttggatggtg gtggttcctg gagggagggt
      661 gcgaatcctt ttccgggttt ggagccgttc accgcggagc agcgcgaggt ctttttcggt
      721 cgcgcaacgg actcccgcag ggtggccaac caattacggt caatggaggg cgcgggccgc
      781 actggagggc tgttcgcgct ggtcggaccg tccggttgcg gcaagtcgtc cctgctcaat
      841 gccggggtag cgccgttgtt agacggtgat ccggcatggc taagggtgcc aacgttggtg
      901 ccgggaaccg atccactgcc tgagctggcc aggaggctag cgatcaccgc agcccgtcgg
      961 gagctggatt ggtcgacgag tgacgtgcgg agtcggctcg aagtcggcac ggatgggctg
     1021 cggcgggtgg ctgatgacct gttggcggcc agcccgggca cacaccagca gcggttgcta
     1081 atcatgatcg accaggctga ggagttgttc acccgaacaa cctccaccgc gcgtcagcaa
     1141 ttcgtgcaac tgctcaatgg tgctatgagc ggcctggtgc aggtcgtggt cgtgatgcgc
     1201 tcagagttcc ttgatgacct gcgggcgctt cccgcgctgg cgggcacgtc gatcgaggcg
     1261 cacgtcgtgg ccccgttaga ccaggagatg ttgcgcgagg tcattgaacg gccggccaag
     1321 gtggcccgac tgcacctcga ggacggactc gtggcggcgc tggtcgccga taccgcaagc
     1381 ggtgaggccc tgcctctgct ggcgttcacc ctgcgccaac tggccgacgg gctcattcct
     1441 ggagccacgt tgattcagtc tcgatacgac agcctcggca gggtgcgagg ggcgttgatt
     1501 cggcatgccg atgcgacgct gaccgacgcg atcggggtca gcggcctgag tcaatcccaa
     1561 ctgctggccg gactgactcg cctagtcacg gtggacgaca ccggccggcg cgctaggcgg
     1621 aggactatgc tccccggccc cgccgatccc ctccgggatg cgctgcaagt gttcgttgac
     1681 cgccggctgc tgctgagcga caccgacgac aacaatcaag tgtggctcac ggtggtccac
     1741 gaggccctgc tcaccgagtg gcggccactg gacaccgcca ccgccaacat catcactgcc
     1801 ctgcgcgccg cccggatagt cgagcaagca gccgcggaat ggaacagcgc ggggcggcct
     1861 gaacattacc tgtggaatga gaagcgactc accgccacgc tggtcacatt ggggatagcc
     1921 agcgacgaca acagccacga ccaaaactca gctgcatatc ctgtcgtcgc gcttgatgaa
     1981 gaggcatggt cgttcctcag cgccacgacc gagcgtgtca gcgcggcgaa agaacgagag
     2041 cggcgtcacc gtagggccgt caccgctggc ttgttggccc tattgctcgt tgtgacgacc
     2101 gtgtcgatat tcgcggtcta tcaacgcaat accgcgcaga cacaacgcga caccgccatc
     2161 ctcaaccaga tcaccctcga agctgaccgg caacgcggta ccg
//
LOCUS       DASVXZ010000849         4942 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1677067, whole genome shotgun sequence.
ACCESSION   DASVXZ010000849 DASVXZ010000000
VERSION     DASVXZ010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4942
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1677067"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..458
                     /locus_tag="VF788_17945"
     CDS             <1..458
                     /locus_tag="VF788_17945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HEX8936018.1"
                     /translation="WAHEVHGHLGGRPPAVGLAREQAIAEVLAAASRDGLVSAAHDLS
                     DGGLAQALVEACLLSRCGARVTLPPHLDPFVALFSESSARVLLGVSRAHAPRVVQLCS
                     AAGVPMTRLGEIHTTSALEIAPLVPLTLTELRTAWEATLPALFDAPIPQ"
     gene            470..835
                     /locus_tag="VF788_17950"
     CDS             470..835
                     /locus_tag="VF788_17950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020632301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterol carrier family protein"
                     /protein_id="HEX8936019.1"
                     /translation="MSSELAGALDMVTAWLDGQGPQPAREELARAVRLSLRTLAQIAP
                     GATVEVRVPPFAAVQCIAGPRHTRGTPPNVVETDVRTWLELATGRVSWADALDDGRIA
                     ASGPRADVSRWVPLVFLPP"
     gene            880..1449
                     /locus_tag="VF788_17955"
     CDS             880..1449
                     /locus_tag="VF788_17955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03086 family metal-binding protein"
                     /protein_id="HEX8936020.1"
                     /translation="MGNMTLSRFNSAVAEFDRRVRAIRPDQWHNPTPCAEWDVRALVN
                     HLVTEQLWAPLLLDGATVDDVGDRFEGDQLGADPVTAWASAAAAAGEAIAAPGALRRS
                     VELSYGRRPAEGYCQEMTMDLAVHAWDLARGIMADEHLDEDLVDDVLAFIEPQAEHLA
                     SSGLFAPPVAVGDGADAQSRLLALLGRRP"
     gene            1545..3083
                     /gene="purF"
                     /locus_tag="VF788_17960"
     CDS             1545..3083
                     /gene="purF"
                     /locus_tag="VF788_17960"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEX8936021.1"
                     /translation="MGNQEPRHDPDRRDDYTGPREECGVFGVWAPGEEVAKLAYFGLY
                     ALQHRGQEAAGIAVSDGSQVLVFKDLGLVSQVFDEQVLSSLSGHIAVGHCRYSTTGAS
                     TWENAQPTFCTTATGSGLALGHNGNLVNTAELLAQARKLGLPTRHGVTTDSDLITGLL
                     TAAAADTGIENAAQRLLPQLRGAFSLVFCDEDTLYAARDAHGVRPLVLGRLDRGWVIA
                     SETAALDIVGASFVREVEPGELLAIDAGGLRSSRFAGPDPKGCIFEYVYLARPDTTIA
                     GRGVHATRVEIGRRLAQEHPAEADLVIPVPESGTPAAIGYAQGSGIPYGKGLVKNAYV
                     GRTFIQPSQTIRQLGIRLKLNPLRDVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAI
                     EVHVRIASPPVRWPCFYGIDFASRAELIANGADIDGIRRSIGADSLGYVSLEGLIAAS
                     EQPASRLCTACFDGRYPIPLPPEEFIGKHLLEDIDAATRGLAGDAEPVLPVGAGAEDA
                     LGRP"
     gene            3201..4298
                     /gene="purM"
                     /locus_tag="VF788_17965"
     CDS             3201..4298
                     /gene="purM"
                     /locus_tag="VF788_17965"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEX8936022.1"
                     /translation="MTEIDSSHATYAAAGVNILAGEQAVSALRPHAERARRPEMLGAI
                     GGFAGLFKLKLDRWREPVLASSTDGVGTKIAIAQAMDVHHTLGIDLVAMVVDDLVVCG
                     AEPLFLQDYIAVGKVLPERIAELVRGIADGCVQAGCALLGGETAEHPGMMTDEDYDLS
                     ATGVGVVEADAILGPECVRPSDVVVAMGSSGLHSNGYSLARHVLLDSARMPLDGHVEE
                     FGRTLGEQLLEPTRIYAKDCLALVAETEVRTFAHVTGGGLAANLSRVMPRGLVAVLER
                     GSWTPAAEFALIARRGRVERAEMERTFNMGVGMVAVVDPSEVDRALAVLTARHVPAWV
                     LGEVHKSRDVVVEVAAKNSVRAVLHGDHPRF"
     gene            complement(4335..4517)
                     /locus_tag="VF788_17970"
     CDS             complement(4335..4517)
                     /locus_tag="VF788_17970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007024340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3073 domain-containing protein"
                     /protein_id="HEX8936023.1"
                     /translation="MGRGRAKAKQTKVARELKYSSPATDLEALQRELSGGNGNHSNED
                     DRADEAYADEYDERRR"
     gene            complement(4616..>4942)
                     /locus_tag="VF788_17975"
     CDS             complement(4616..>4942)
                     /locus_tag="VF788_17975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019806663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936024.1"
                     /translation="AHRRQVEALVADVDLSDVGSLADDKLDSALAAYQTEEATVSRHR
                     REVQRVVDTCNAEIGSRYARGTASVDELLAEQRGLSGPEIREPPAPSSDTSPDTPMRV
                     PPRRID"
BASE COUNT          722 a         1663 c         1733 g          824 t
ORIGIN      
        1 aatgggccca cgaggtgcac gggcacctcg gtggtcgccc acccgcagtg ggtctggccc
       61 gggaacaggc gatcgccgaa gtactcgccg cagcctctcg cgacggcctg gtgagcgcgg
      121 cccatgacct gtccgacggc gggctcgctc aggcgctggt ggaggcctgc ctgttgagcc
      181 ggtgcggcgc gcgggtcacc ctgcccccgc acctcgaccc gttcgtcgcg ctgttctccg
      241 aatcctccgc ccgcgtccta ctcggcgtat cgcgcgccca tgcaccgcgt gtcgtgcagc
      301 tgtgctcagc tgcaggggtg ccgatgaccc gactaggcga gatccacacc acgtccgcgc
      361 tggagatcgc tcctctcgtc cccctcactc tcaccgaact ccgcaccgcc tgggaggcca
      421 cactccccgc cctgttcgac gccccaatcc cgcaatgaag gacgggcaga tgagcagcga
      481 gctggctgga gcacttgaca tggtgacggc gtggctagac gggcaaggcc cgcagcccgc
      541 gcgcgaggag ctggcgcggg ctgtccggct cagccttcgc acgctggcgc agatcgctcc
      601 cggcgctacg gtggaggtgc gggtgccgcc gttcgctgcg gtgcagtgca tcgcgggacc
      661 cagacacacc cgtggtaccc cacccaacgt ggtggagacc gacgtgcgca cctggctgga
      721 acttgccacc gggcgggttt cctgggccga cgcgctggat gatgggcgga tagcggcatc
      781 ggggccccgc gctgatgtct cgaggtgggt gccgttggtg ttcctgccgc cgtagccgct
      841 cggggagacg ggtcgcacat caccgggaac atgaccacga tgggaaatat gaccttatcc
      901 cggttcaact cagctgtggc ggagttcgat cgcagagtgc gggcgatccg gccagatcag
      961 tggcacaacc ccaccccgtg cgctgaatgg gacgtccgcg cgctggtgaa ccacctggtg
     1021 accgagcagc tgtgggcgcc gctgctgctt gacggggcca ccgtggacga tgtcggggat
     1081 cggttcgagg gcgatcagct cggtgctgat ccggtgacgg cgtgggcgag tgccgcggct
     1141 gcggcggggg aggcaatcgc tgccccaggt gcgttgcggc gttccgttga gctgtcttac
     1201 gggcgccgcc ccgccgaggg atattgccag gagatgacca tggacctcgc cgtgcacgcg
     1261 tgggatctgg cccggggcat catggctgac gagcacctcg atgaggatct ggtggacgac
     1321 gtgctggcct tcatcgaacc ccaggctgag cacctggcca gcagcgggtt gttcgcacca
     1381 ccggtggcgg tgggcgacgg tgccgacgcc cagtcccggc tgctcgctct gctcgggcgc
     1441 cggccctagc gcggctcgca agtaacccgc ctagactgga agctgtcggc ccagatccct
     1501 gatacctccc aaaaatcgcc ggcactttcc ccgtggagtc gcaggtgggc aatcaagagc
     1561 cccgacatga ccccgaccgt cgagacgact acaccggacc gcgcgaggag tgcggtgtgt
     1621 tcggggtgtg ggcgcccggc gaggaggtcg ccaagctggc ctacttcggc ctgtacgccc
     1681 tgcagcaccg cggtcaggaa gccgctggca tcgcggtgtc cgacgggtcg caggtcctgg
     1741 tgttcaagga cctcgggctg gtcagccagg tcttcgacga gcaagtgctc tccagcctgt
     1801 ccgggcatat cgcggtaggg cactgccgct actccaccac cggcgcgagc acctgggaga
     1861 acgcccagcc caccttctgc accacggcca ccgggtccgg tctcgcgctg gggcataacg
     1921 gcaacctggt caacaccgcc gagttgctcg cgcaggcccg caagctcggt ctgcccacta
     1981 ggcatggggt taccaccgac tccgacctga ttacggggtt actcaccgcc gccgcggcag
     2041 acaccggtat cgagaatgcc gcccagcgcc tgctgcccca gctgcgggga gcgttctcac
     2101 tggtgttctg cgacgaggac acgctctacg ccgcccgcga cgcgcacggg gtccgtccgc
     2161 tggtgttggg caggctggac cgcggctggg tgatcgccag cgagactgcg gcactggaca
     2221 tcgtcggcgc cagcttcgta cgggaagtcg agccgggcga gttgctggct atcgacgcgg
     2281 gcggcctgcg cagttctcgc ttcgccggcc ccgatcccaa gggctgcata ttcgagtacg
     2341 tctacctggc ccgcccggac accacgatcg ccgggcgcgg cgtgcacgcc acccgggtgg
     2401 agatcggccg ccggctggcc caagaacacc cggccgaggc tgacctcgtc attccggtac
     2461 ccgaatcagg caccccggcc gcgatcggct acgcgcaggg ctcggggatc ccctacggga
     2521 agggcctggt gaaaaacgcc tacgtcgggc ggactttcat ccagccctcc cagacgattc
     2581 gccagctggg catccggctc aagctcaacc cgctgcgtga cgtcatccgg ggcaagcgcc
     2641 tggtggtggt ggatgactcc atcgtgcgcg gcaacaccca gcgtgcgctg gtccggatgc
     2701 tgcgcgaggc cggcgcgatc gaagtgcatg tccggattgc cagcccgccg gtgcgttggc
     2761 cgtgcttcta cggcatcgac ttcgcctctc gcgccgagct gatcgccaac ggcgccgaca
     2821 ttgatgggat acggcgctcc atcggggcgg acagcctcgg ttacgtcagc ctcgagggcc
     2881 tcatcgccgc ttcggagcag ccggcctccc gactgtgtac ggcttgcttc gatggtcgct
     2941 acccgatccc gctgccgcct gaggagttca tcggcaagca cctgctcgaa gatatcgacg
     3001 cggcaacgcg gggtctggcc ggggacgctg agccggtgtt gcccgtgggt gcgggcgctg
     3061 aggatgccct gggccggccc tgagcggcgg acctgtcggg gcggctcggg ctggctcggg
     3121 cggcgaccag gtaacgtggc tgttacagct cggaggggca gcgttcgcgc catcgtcaac
     3181 tatgtcctgg agcgcctgcg atgaccgaga tcgacagctc acacgccacc tacgccgcgg
     3241 ccggagtgaa catcctcgcc ggtgagcagg ccgtctccgc gctgcggcca cacgctgagc
     3301 gggcccgccg cccggagatg ctgggcgcga tcggtgggtt cgccggcctg ttcaagctca
     3361 agctggatcg ctggcgtgaa ccggtgctgg ccagctccac cgacggtgtc ggcacgaaga
     3421 tcgcgatagc gcaggcgatg gacgtgcacc acaccctcgg gatcgatctg gtggcgatgg
     3481 tcgtcgacga cctggtggtg tgcggagccg aaccgctgtt cttgcaggac tacatcgccg
     3541 tcggaaaggt gctgccggag cggatcgccg agctcgtccg gggaatcgcc gacggctgcg
     3601 ttcaggccgg ctgtgcgctg ctgggcggag agaccgccga gcaccccggg atgatgaccg
     3661 acgaggacta cgacttgtcc gcgaccggag tcggtgtggt cgaggccgac gccatcctcg
     3721 ggcccgagtg cgtgcgcccc agtgacgtgg tggtggcgat gggctcctcg gggctgcact
     3781 ccaacggcta ttcgctggcc cggcacgtgc tgctggacag cgcccggatg ccactggacg
     3841 ggcatgtcga ggagttcggc cgcacgctgg gggagcagct gctcgaaccg acccggatct
     3901 atgccaagga ctgcctggct ctggtggcag agaccgaggt gcggaccttt gcgcacgtga
     3961 ccggtggtgg cttggcggcg aacctgtcgc gcgtgatgcc ccgcgggctg gtcgctgtgc
     4021 tggagcgcgg cagctggacg ccagcggcgg agttcgcgct gatcgcccgg cggggccggg
     4081 tggagcgggc cgagatggag cggaccttca acatgggtgt cggaatggtc gctgtggtcg
     4141 atccgtccga agtggatcgt gcgctggccg tgctcaccgc caggcatgta ccggcgtggg
     4201 tgctcggcga ggtgcacaag tcccgggacg ttgtcgtcga ggttgctgcg aagaactccg
     4261 tgcgcgcagt gctccacgga gaccatccac ggttctgagc gccggctccc tatcccgatt
     4321 ccgcggcttc cgtctcagcg gcggcgctcg tcgtactcgt ccgcgtacgc ctcgtcggcg
     4381 cggtcgtctt cattgctgtg gttgccgttg ccgcccgaca gctctcgttg cagagcctca
     4441 aggtccgtag caggagagct gtacttgagc tcacgcgcca ccttcgtctg cttggcctta
     4501 gcccggccgc gccccatggc tcgaccccct cgcacgcagg gacgaagcca tccgggggat
     4561 cggcggcctc gttcgctcga caacatccgt tggttaccac cgtacagggt tccgctcagt
     4621 cgatgcgacg cggcggcacc ctcatcggag tgtcggggct cgtgtcactg ctgggcgccg
     4681 ggggctcgcg gatttccggt ccgctgagtc cgcgttgttc ggcgagcagc tcgtctacag
     4741 aggcagttcc gcgggcatac cgggaaccga tctcggcatt gcaggtgtcc accacccgct
     4801 gcacctcgcg gcggtgccgg gataccgtcg cctcctctgt ctggtaggcc gccaaggcgc
     4861 tgtcgagctt gtcgtcggcc agcgacccga catcagagag atcgacatca gcaaccaggg
     4921 cctcgacctg gcgacggtgt gc
//
LOCUS       DASVXZ010000850         2477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_601460, whole genome shotgun sequence.
ACCESSION   DASVXZ010000850 DASVXZ010000000
VERSION     DASVXZ010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_601460"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..751
                     /locus_tag="VF788_17980"
     CDS             <1..751
                     /locus_tag="VF788_17980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019813780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Zn-binding domain-containing protein"
                     /protein_id="HEX8936025.1"
                     /translation="IDAGSACSAVHPGAVYLHRGESLVVEELDLETGVALVHPEEPQW
                     HTSARSVTDISVVAVMEKWRSGGVSVALGEVEVTSQVVGYLRRLPSGQVLDAVPLELP
                     PSTLRTRAVWFTVCESALEAAGLSPGAWPGALHAAEHAAIGLLPLVATCDRWDIGGVS
                     TALHRDTGEPTVFVHDGHPGGAGFADRAHAALRPWLSATRDAIAACECPAGCPSCVQS
                     PKCGNGNDPLDKTGAIVVLDTVLASLPAQDP"
     gene            842..1054
                     /locus_tag="VF788_17985"
     CDS             842..1054
                     /locus_tag="VF788_17985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936026.1"
                     /translation="MSDEPRVTGDPMQDLRKATAALGEATGRCVGHFIRRDDLLAEWI
                     AAVGEHALAVEAAVQDLAARLPQPGE"
     gene            complement(1081..1446)
                     /locus_tag="VF788_17990"
     CDS             complement(1081..1446)
                     /locus_tag="VF788_17990"
                     /inference="COORDINATES: protein motif:HMM:TIGR03816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rv3654c family TadE-like protein"
                     /protein_id="HEX8936027.1"
                     /translation="MTASADGDRGVATVWAAGAIAVLVGLAVFGLRLGQAMVARHHAE
                     SAADLAALAGAAQVVAGEQYACAQARRVTDRMRVQLASCHIRGLDVLVEAAAQSRGWL
                     GEFGAATGRARAGPAALEG"
     gene            complement(1443..1826)
                     /locus_tag="VF788_17995"
     CDS             complement(1443..1826)
                     /locus_tag="VF788_17995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005466657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family type IV pilus minor pilin"
                     /protein_id="HEX8936028.1"
                     /translation="MRCLLRDDRGTVTVEAALALCSLVVILALVLGAVSAVAAQLRCI
                     DAAREAARLTARGEHDRAEELARRIAPRGAVVAVAIRGDEVTARVSANPVAGLLPGLK
                     VGAEGVAILEPVAGEPVIPEPRNVP"
     gene            complement(1826..2023)
                     /locus_tag="VF788_18000"
     CDS             complement(1826..2023)
                     /locus_tag="VF788_18000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4244 domain-containing protein"
                     /protein_id="HEX8936029.1"
                     /translation="MQRWRLAVARATGAVRGEAGMSTAEYAIGTIAAAAFAAVLYKVV
                     TGGAVVGALTDLVQQALSVKF"
     gene            complement(2083..>2477)
                     /locus_tag="VF788_18005"
     CDS             complement(2083..>2477)
                     /locus_tag="VF788_18005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEX8936030.1"
                     /translation="RAGMPVPVAVQAVAEGLEGAAGSALRRTAELLALGADPAKAWQP
                     TLDCPATARLARSARRSGRGGTALAESLTRLATEVRAAARERSEAQAQRAGVLIAAPL
                     ALCFLPAFLALGVVPVLIGLAAGLMRQW"
BASE COUNT          365 a          882 c          843 g          387 t
ORIGIN      
        1 catcgacgct ggatcggcct gctccgccgt gcacccgggg gcggtgtacc tgcatcgggg
       61 tgagtctctc gtcgtcgagg agctggatct ggagaccggc gtcgcgctgg tgcatccgga
      121 ggagccgcag tggcatacct cggcgcgatc cgtcacggat atctcagtgg tggcggtaat
      181 ggagaagtgg cgctccggtg gcgtgtcagt ggcgctgggc gaggtggagg tgacctcgca
      241 ggtagtgggt tacctgcggc ggctgccctc cgggcaggtg ctcgatgccg tgccgctgga
      301 gctgccgccc tcgacattgc gaaccagagc ggtctggttc acggtctgcg aatccgcgct
      361 cgaggccgcc gggttgtctc ccggtgcctg gccgggcgca ctacacgccg ctgagcacgc
      421 cgcgatcggc ctgctgccgt tggtcgccac ctgcgaccgg tgggacatcg gcggcgtgtc
      481 gaccgcgctg caccgcgaca ccggagagcc gaccgtcttc gtgcatgacg ggcatcccgg
      541 tggtgccggg ttcgctgacc gcgctcacgc cgcgctccga ccgtggctga gcgcgacccg
      601 ggacgccatt gccgcttgcg aatgcccggc tgggtgcccc tcgtgcgtgc agtcgccgaa
      661 atgcggcaac ggcaacgatc cgctggacaa gaccggtgca atcgtcgtgc tcgacaccgt
      721 gctcgcttcg ctacccgctc aggatccctg aggcggttcc tgtctgccgc ggggttatct
      781 agcccggcga gcgatgtggg ctgcgacaca gagcggctgc atccgctcgt aaggtgcact
      841 gatgagcgat gagccacgcg tgactggcga tcctatgcag gatcttcgta aagcgaccgc
      901 tgccctgggt gaagcgacgg gtcgttgcgt cggtcatttc atcaggcggg atgatctgct
      961 cgctgaatgg atcgcggcgg ttggtgagca tgcgttggcg gtggaggctg cggtgcagga
     1021 tttggcggcg cgtctacccc agcccggtga gtgagctaac ggtgtttcga tcgcgctctg
     1081 tcatccttcc agtgcggcgg gcccggctcg ggctcgaccg gtggccgcgc caaactcgcc
     1141 aagccacccc ctcgactgtg cggccgcctc caccagcacg tccaagccac gtatgtggca
     1201 ggaggccagc tgcacccgca tccggtcggt tacccggcgg gcctgggcgc aggcgtactg
     1261 ctcaccggcg accacctgcg cagcacccgc tagcgcggcg agatccgccg ctgactcggc
     1321 atgatggcgg gcgaccattg cttgacccag gcgcaagccg aacaccgcca ggccgaccag
     1381 taccgcgatg gctccggccg cccagaccgt ggccacgccc cggtcgccgt cggcgcttgc
     1441 cgtcatggca cgttccgtgg ttccgggatc accggttccc cggcaaccgg ttccaggatg
     1501 gctacccctt cagccccgac cttgagcccg ggtaacagcc ctgccactgg attcgccgac
     1561 acccgggcgg tgacctcatc accgcggatg gccaccgcca ccaccgcgcc gcggggggcg
     1621 atccggcggg cgagttcttc ggcccggtcg tgctcacccc tcgcggtcag ccgggccgcc
     1681 tctcgggcgg cgtcgatgca gcgcaactgc gccgccaccg ccgacaccgc accaagcacg
     1741 agggccagga tgacgaccag ggagcacagg gcaagcgccg cctccacggt gaccgtgccg
     1801 cggtcgtccc gcaggaggca acgcatcaga acttcaccga caacgcctgc tgcaccaggt
     1861 cggtaagggc gccgaccacg gcgcccccgg tcaccacttt gtagagaacc gcggcgaagg
     1921 ccgccgcggc gatcgttccg atcgcgtact cggcagtgct catgcctgcc tcaccgcgca
     1981 ccgctccggt tgctcgagcg actgccagcc gccaccgttg catgaacttg ttttcggtca
     2041 ccatgggtga acccctcctt agttgtttct gatcaccact gatcaccact gccgcatcag
     2101 accagcggcc agtccgatca gcacgggcac gacaccgagc gcgaggaacg cgggcaggaa
     2161 acacagtgcg agcggggcgg cgatgagtac cccggcgcgc tgggcctggg cctcagagcg
     2221 ttcccgggct gccgcgcgca cctcggtggc cagccgagtg agtgactcgg ccagcgcggt
     2281 tccgccccgg ccactgcgcc gggcgctccg agccagccgc gccgtcgcgg ggcaatccag
     2341 agtgggctgc caggccttcg cgggatcagc acccagggcg agcagctccg cggtgcgacg
     2401 caacgccgac ccggctgcac cctccagccc ctcggcgact gcttgcaccg ctaccggaac
     2461 cggcatcccg gcccgca
//
LOCUS       DASVXZ010000851         2702 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_780323, whole genome shotgun sequence.
ACCESSION   DASVXZ010000851 DASVXZ010000000
VERSION     DASVXZ010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_780323"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VF788_18010"
     CDS             complement(<1..340)
                     /locus_tag="VF788_18010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase subunit D"
                     /protein_id="HEX8936031.1"
                     /translation="MTRRSDIQPGNTEPAHTVASGTTDTASTTAPDPYAATARETTEG
                     RVYTVTGGDWDSLSEDFQHDERIVINMGPQHPSTHGVLRLVLELEGEVVTQARSVIGY
                     LHTGIEKNVEY"
     gene            complement(340..1041)
                     /locus_tag="VF788_18015"
     CDS             complement(340..1041)
                     /locus_tag="VF788_18015"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEX8936032.1"
                     /translation="MSSAQQAEHETRGGVVAGRARQGMFGVRGSGDTSGYGGLALPPY
                     APAPAQRPYGGWFDELTDELLAAMQERGVPAEAILQITVDRGEITYYVHREHLLELCR
                     TLRDDPALRFELCSSVSGVDYGIEVAQRLHAVYHLTSMTYRRRIRLEVAVEIDDARVP
                     SVVEVYPTADWHERETWDMFGIVFDGHPALTRILMPDDWDGHPQRKDYPLGGIPVEYK
                     GGAEIPPPDQRRAYS"
     gene            complement(1118..1717)
                     /locus_tag="VF788_18020"
     CDS             complement(1118..1717)
                     /locus_tag="VF788_18020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HEX8936033.1"
                     /translation="MGLEEKLPSGILLTTVEKVVNWTRKSSLWPATFGLACCAIEMMT
                     TGAPRYDLARFGMEVFRASPRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGV
                     CASSGGMFNNYAIVQGVDHIVPVDMYLPGCPPRPEMLIDAILKLHAKIMDEPLGPKRA
                     AEKAGQHTEMVASSVAYGPQKEPRPSGSGRSQVVEARKQ"
     gene            complement(1720..2085)
                     /locus_tag="VF788_18025"
     CDS             complement(1720..2085)
                     /locus_tag="VF788_18025"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEX8936034.1"
                     /translation="MLQPYVPLVLMLLLAGGFAVFSVVAAPYIGPRRYNRAKLDAYEC
                     GIEPSPQPVAGAGRMPVAYYLTAMLFILFDIEMVFLYPFAVAADSLGLFGLVEIALFI
                     ITLGFAYAYVWRRGGLDWN"
     gene            complement(2216..>2702)
                     /locus_tag="VF788_18030"
     CDS             complement(2216..>2702)
                     /locus_tag="VF788_18030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8936035.1"
                     /translation="TPQEWGFREDNATGKILGAALPMSFNRTPHYRAGLLLVGDAGGM
                     VNPFNGEGIAYAMESARLAAECAVQATARPEGPARERALQRYPTALREELGGYFRLGN
                     VFSRLIGHPAVMRAGIRHALPRATLMRFMLKLLANLYDTRDGDSMDRVITAMTRLAPS
                     V"
BASE COUNT          444 a          928 c          868 g          462 t
ORIGIN      
        1 ggtactcgac gttcttctcg ataccggtgt gcaggtagcc gatcaccgag cgggcctggg
       61 tgacgacttc gccctccaac tccaagacca gccgcagcac gccatgcgtg gaggggtgct
      121 gtggccccat gttgatgacg atgcgttcgt cgtgctggaa gtcctcgctc aggctgtccc
      181 agtcaccacc ggtgacggtg tacacgcgcc cctcggtggt ctccctggcc gttgcggcgt
      241 aaggatccgg cgccgtagta cttgccgtgt cggtggtccc gctggcgacc gtgtgcgcgg
      301 gttcagtatt cccgggttgg atgtcactgc gccgggtcat caggagtacg ccctccgctg
      361 gtctggcggc gggatctcgg cgccgccctt gtattccacc gggatcccgc cgagtgggta
      421 gtccttgcgt tgcggatgcc cgtcccagtc gtccggcatg aggatgcggg tcagcgccgg
      481 atgaccgtcg aagacgatgc cgaacatgtc ccaggtctcc cgctcgtgcc agtccgcggt
      541 cggatagacc tccaccacgc tgggaactcg ggcatcgtcg atctcgacgg cgacctccag
      601 ccggatccgg cgccggtagg tcatcgaagt gaggtggtac accgcgtgca gccgctgcgc
      661 gacctcgatc ccgtagtcca ccccggacac cgaactgcac agctcaaaac gcagtgccgg
      721 gtcgtcccgt agcgtgcggc acagctccag caggtgctcc cgatgcacgt aataggtgat
      781 ctccccgcga tccacggtga tctgcaggat ggcttcggca ggcaccccgc gctcctgcat
      841 ggcggccagc agctcgtcgg tgagctcgtc gaaccagccc ccgtagggtc gctgcgctgg
      901 ggcgggagca tagggcggca acgccaaccc gccgtaaccg gaggtgtcgc cggagccgcg
      961 aacgccgaac atgccctgcc gggcccgtcc ggcgaccacc ccgccacgag tctcgtgctc
     1021 ggcctgctgg gctgagctca tctcagccga gctggactga ccgggtgcga gaccccggtt
     1081 cttggtgtcg tttttgtctt tgtccggcat tctcagctca ctgcttccgg gcttcgacga
     1141 cctgcgaccg gccgctcccg gatggtctgg gctccttctg cgggccgtag gccaccgagg
     1201 acgccaccat ctcagtgtgc tggccggctt tctccgcggc ccgcttcggg cccagcggtt
     1261 cgtccatgat cttggcgtgc agcttgagga tcgcgtcgat gagcatctcc ggacgtggtg
     1321 gacaaccggg caggtacatg tccaccggga cgatgtggtc cacgccctgc acgatcgcat
     1381 agttgttgaa catccccccg ctggaggcgc agacgcccat cgcgagaacc cagcgcggct
     1441 cgggcatctg gtcgtagatc tggcgcagca ccggagccat cttgttgctc acccggcccg
     1501 ccacgatcat cagatcagcc tggcgtgggg acgcccgaaa cacctccata ccgaaacggg
     1561 ccaggtcgta gcggggagcg ccggtagtca tcatctcgat cgcgcaacag gccagcccga
     1621 aggtggccgg ccacagcgag gatttccggg tccagttgac caccttctcc acggtggtca
     1681 gcaggatccc gctggggagc ttctcttcca gacccatgat cagttccagt ccagcccgcc
     1741 gcgccgccag acgtaggcgt aggcgaagcc gagggtgatg atgaacaggg cgatctccac
     1801 cagcccgaac aggcccagcg agtccgcggc caccgcgaac gggtagagga agaccatctc
     1861 gatgtcgaag aggatgaaca gcatggcggt gaggtagtac gccaccggca tacgtccggc
     1921 ccccgcgacc ggttgcggcg aaggctcgat gccgcactcg taggcgtcga gcttggccct
     1981 gttgtaccgg cgcggcccga tatacggtgc cgcgacaaca gagaagactg cgaacccccc
     2041 cgccagcaag agcatcaata ccaggggaac gtagggctgc aacactgccg tcccgtcctt
     2101 cccgtctcgt gaacgtccca catccaccct acgtgtgggg cggtcacgcg ctgccctgag
     2161 gctaacctat aaatccggtc ccgatcaggc gttatccctg atcggcgagg cgtggtcaca
     2221 cgctgggcgc cagccgggtc atcgccgtga tcacccgatc catcgaatcg ccatcccggg
     2281 tgtcgtagag gttggccagg agcttgagca tgaagcgcat cagcgttgca cggggcaggg
     2341 cgtgccggat tcccgcgcgc atcaccgccg ggtggccgat caaccggctg aacacgttcc
     2401 ccaaccggaa atagcccccc aactcctcac gcagcgccgt agggtaacgc tgcagtgcac
     2461 gctcccgggc cggcccctcg ggacgggccg tcgcctgcac cgcgcactcc gcggcaagcc
     2521 gggcggactc catcgcgtac gcgatgcctt caccgttgaa cgggttcacc atcccaccgg
     2581 cgtcgccgac cagcagcagg ccggcccggt agtgcggggt gcggttgaag ctcatcggca
     2641 gggccgcacc gaggatcttt ccggtggcgt tgtcctcgcg aaagccccac tcctgcggag
     2701 tc
//
LOCUS       DASVXZ010000852         2372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1133631, whole genome shotgun sequence.
ACCESSION   DASVXZ010000852 DASVXZ010000000
VERSION     DASVXZ010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1133631"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1713
                     /locus_tag="VF788_18035"
     CDS             <1..1713
                     /locus_tag="VF788_18035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012796376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEX8936036.1"
                     /translation="VRSLEALGCEAVFGIPGGTILPAYDPLLDSTILRHVLVRHEQGA
                     GHAATGYAQATGRVGVCMATSGPGATNLVTPLADAHMDSVPVVAITGQQTRALIGTDA
                     FQEADITGITMPVTKHNMLVKDPAEIPRAIAEAFHLASTGRPGPVLVDIPKDVLQEQT
                     SFAWPPELDLPGYRPTTRPHGKQIREAARLITTARRPVLYVGGGVIKAHATGALRELA
                     EVTGAPVVTTLMARGAFPDSHPQHVGMPGMHGTVAAVAAMQRSDLLVTLGARFDDRVT
                     GQLSSFAPEAAVIHADIDPAEISKNRRADVPIVGDCAEVISELIIAVRAEFESNRPDL
                     AAWWQQLRSWQQTFPLGYDRPSDGMLSPQYTIERIGALVGPDAIYTAGVGQHQMWAAQ
                     FIRYEKPRSWINSGGLGTMGYAVPAAMGAKLGRPEVPVWAIDGDGSFQMTNQELATCA
                     IENIPIKVAVINNGSLGMVRQWQNLFYFERYSQTDLGTHLRIPDFVKLAEALGCVGLR
                     CEAEGDVDRVIEQAMEINDRPVVIDFVVGKDAQVWPMVAAGKGNNDIMSARDIRPLFD
                     EDGS"
     gene            1710..2216
                     /gene="ilvN"
                     /locus_tag="VF788_18040"
     CDS             1710..2216
                     /gene="ilvN"
                     /locus_tag="VF788_18040"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005454221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEX8936037.1"
                     /translation="MTTHTMSVLVENKPGVLARVSGLFSRRGFNIHSLAVGPTEIQDI
                     SRMTIVVAVDELPLEQVTKQLNKLINVIKIVELEPVMAVQRELLLIKVRADTTVRSQV
                     LETVTLFRAKVVDVSPESLTIEATGTADKLDALLRMLEPYGIREMAQSGMVAIGRGPR
                     AITAGATR"
     gene            2269..>2372
                     /locus_tag="VF788_18045"
     CDS             2269..>2372
                     /locus_tag="VF788_18045"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014352178.1"
                     /note="catalyzes the formation of
                     (R)-2,3-dihydroxy-3-methylbutanoate from
                     (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and
                     isoleucine biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEX8936038.1"
                     /translation="MNAEVFYDSDADLSVIGGRKVAVIGYGSQGHAHA"
BASE COUNT          416 a          750 c          807 g          399 t
ORIGIN      
        1 gtccgttctc tggaggcact gggatgcgag gcggtgtttg gcatcccggg cggcacgatc
       61 ctgccggcct atgacccgct gctggactcc acgatcctcc gccacgtgct ggtccgccac
      121 gagcagggcg ccggacacgc ggccaccggg tatgcgcagg ccaccgggcg ggtgggggtg
      181 tgcatggcca cttcaggtcc gggcgcgacg aacctggtta cgccgctggc ggatgcgcac
      241 atggattcag tgccagtggt ggccatcacc ggtcagcaga ccagggcgtt gatcggcacg
      301 gacgcgtttc aggaagcgga tatcaccggc atcacgatgc ccgtcaccaa gcacaacatg
      361 ctggtgaagg atcccgcgga gatcccgagg gcgatcgccg aggcgttcca cctggcctcg
      421 accggccgtc cgggtcctgt gctggtggac atccccaaag acgtgctgca ggagcaaacc
      481 tccttcgcgt ggccacccga actggacctc cccggctacc ggccgaccac gcggccgcac
      541 ggcaagcaga tccgtgaggc cgctcggctc atcaccaccg cccggcgtcc ggtgctgtac
      601 gtaggcggcg gggtgatcaa agcccacgcc accggggcgt tgcgggagtt ggccgaggtc
      661 accggggcac cagtggtgac cacgttgatg gctcgtgggg ccttccccga ctcgcacccg
      721 cagcatgtgg gaatgcccgg catgcacggc accgtggccg cggtcgccgc gatgcagcgc
      781 tccgacctgt tggtgacttt gggtgcccgc ttcgacgacc gggtcaccgg gcagctgtcc
      841 tccttcgcgc ctgaggccgc ggtgatccac gccgacatcg accctgcaga gatctccaag
      901 aatcggcgag cggacgtgcc gatcgtcggt gactgtgcgg aggtgatcag cgagctgatc
      961 atcgcggtgc gggccgagtt cgagagcaac cgtcccgatc tggctgcctg gtggcagcag
     1021 ctgcgcagct ggcagcagac cttcccgctg ggctatgacc ggcccagcga tggaatgctc
     1081 tctccccagt acaccatcga gcggatcggg gctctggtcg gcccggatgc gatttacacc
     1141 gcaggcgtgg gtcaacacca gatgtgggcg gcccaattca tcagatacga gaagccgcgc
     1201 agctggatca actctggcgg cctgggcacg atgggttacg ccgtgcccgc ggcgatggga
     1261 gcgaagctgg gccggccgga ggtgccggtc tgggcaatcg acggtgacgg tagcttccag
     1321 atgaccaatc aggagctggc gacctgcgcg atcgagaaca tcccgatcaa agtcgcagtg
     1381 atcaacaacg gtagcctggg tatggtccgg caatggcaga atctgttcta cttcgagcgc
     1441 tactcgcaga ccgatctcgg tacccacctg cgcattccgg atttcgtgaa acttgccgag
     1501 gcactgggct gcgtgggtct gcgctgcgag gccgaagggg acgtcgacag ggtgatcgag
     1561 caggccatgg agatcaacga ccgcccggtt gtgatcgatt tcgtggtggg caaagacgct
     1621 caggtgtggc cgatggtcgc ggccggcaag ggtaataacg acatcatgtc ggcgcgggac
     1681 atccggccgc tgtttgacga ggacgggtca tgaccacgca caccatgtcg gtcctggtgg
     1741 agaacaagcc cggcgtgctg gctcgggtgt ctgggttgtt cagccgccgc gggttcaaca
     1801 tccactcgct ggcggtcgga cccaccgaga tccaggacat ctcccggatg accatcgtgg
     1861 tggccgtcga tgaactgccc ttggagcagg tcaccaagca gctcaacaag ctgatcaacg
     1921 ttatcaagat cgtggagctc gaaccggtga tggcggtgca gcgggaactg ctgctgatca
     1981 aggtgcgggc cgacaccacg gtgcgctccc aggtgctcga gaccgtgacg ctgttccggg
     2041 ccaaggtggt cgacgtctcc ccggagtcgc tgaccatcga ggccaccggc accgccgaca
     2101 agctcgatgc cctactccgg atgctcgagc cctatggcat ccgggagatg gcccagtccg
     2161 gcatggtcgc catcggccgc ggtccccgcg ccatcaccgc gggcgccacc cgctgaagcg
     2221 gcatcgtccc ccaccgcgct gtaccagacc aagatcagga gttttcggat gaatgcagag
     2281 gtgttttacg acagcgacgc tgacctgtca gtgatcggcg ggcgcaaggt cgctgtgatc
     2341 gggtacggca gtcaggggca tgcgcatgcg tt
//
LOCUS       DASVXZ010000853         2700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_780517, whole genome shotgun sequence.
ACCESSION   DASVXZ010000853 DASVXZ010000000
VERSION     DASVXZ010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_780517"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /gene="ybeY"
                     /locus_tag="VF788_18050"
     CDS             <1..504
                     /gene="ybeY"
                     /locus_tag="VF788_18050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEX8936039.1"
                     /translation="RFAMDRLGVSPLAELSMLLVGTRVMADLHQRWMDLPGPTDVMAF
                     PMDEADEGGALAGGRPDSPTGGPELLGDIVLCPEVAMKQAATAGHSVLDELQLLTVHG
                     VLHLVGYDHAEPAEEREMFALQDQILDEFRRADRAGRRRIAQRDADTRLLGVVGLDGP
                     EASGPQR"
     gene            526..1863
                     /locus_tag="VF788_18055"
     CDS             526..1863
                     /locus_tag="VF788_18055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEX8936040.1"
                     /translation="MSPVPLLVLAATLVVAAGAFAAADAALSTASRARVDALVRAGRF
                     GARALSLVVADRPRHINLLLLLRLSCELIATVLVTVAAVRALSPTWLAVLVAGLAMVV
                     VTYVVVGVGPRTIGRQHPDAVGLVVAGPVRVLGRILGPLSRLLIFVGNAITPGRGFPE
                     GPFTSEVELRELVDMAGERGVVEAGEAEMIHSVFELGDTAAREVMVPRTEIVWIEQDK
                     SVRQAVALCLRSGFSRLPVIAESVDDIVGVVHLKDLVARTVPEVPDGGVVGEVMRPAT
                     FVPDSKLLTGLLKEMQVSRNHMAVVVDEYGGTAGLLTIEDILEEIVGEITDESDTEAR
                     PPIEDLGDGRVRVISRLPVIDLGELFAVDLADTDVETVGGLLAQRLGRVPVPGAEADV
                     AGLRLRAEGGNDRRGRLRITTVVASREPPRPDPATKLDPVAADPPQEASDTRA"
     gene            1856..2194
                     /locus_tag="VF788_18060"
     CDS             1856..2194
                     /locus_tag="VF788_18060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEX8936041.1"
                     /translation="MPELEPEDAKIVTLARSALARTGAPEGAAVRDTDGRTYTGVTVS
                     LASLGLTALQAAVAAAVVSGATGLEAAAVVSGSVDPASLAAVRELGPAAPVLLVDQRG
                     EVSDVLRVAG"
     gene            2197..>2700
                     /locus_tag="VF788_18065"
     CDS             2197..>2700
                     /locus_tag="VF788_18065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016332464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEX8936042.1"
                     /translation="MAAPVEEPFRAGFACLVGRPNVGKSTLTNALVGQKVAITSSRPQ
                     TTRHTIRGIVHQPHGQLVLVDTPGLHRPRTLLGERLNGLVRATWSEVDAIGLCVPADS
                     AIGPGDRFIAGELAALSRRTPLFAVVTKTDLVAPQRVAEQLAGLAELARSAGIGEFAE
                     LVPVSAVD"
BASE COUNT          361 a          866 c         1006 g          467 t
ORIGIN      
        1 cgtttcgcga tggaccggct gggtgtgagc ccattagccg aattgtccat gctgctggtc
       61 gggactcgag tgatggcgga tctgcatcag cgctggatgg acctgccggg ccccaccgat
      121 gtgatggcct tcccgatgga cgaagccgac gagggtgggg cgctggcggg cggcaggccg
      181 gacagtccga ccggcggccc agagctcctc ggtgacatcg tgctgtgccc agaggtcgcg
      241 atgaagcagg ctgcgacagc cggccactcg gtgctcgacg agctgcagct gctcaccgtg
      301 cacggtgtgc tgcacctggt gggatacgac catgctgagc ctgccgagga gcgtgagatg
      361 ttcgccctgc aggaccagat ccttgatgag ttccggcgtg ccgaccgggc tggccggcgt
      421 cggatcgcgc aacgggatgc cgacacccgg ctgctagggg tggttggcct ggacgggccg
      481 gaggcctccg gcccccagag atagcccacc ggccttaccg tgctgatgtc accggttcca
      541 ttgctcgtac tggctgccac gcttgtggtg gccgcggggg cgttcgcagc cgccgacgcc
      601 gcgttgagca cggcgtctcg ggcccgcgtc gacgcgctgg tgcgcgctgg gcggttcggc
      661 gctcgcgcgc tctcgctggt cgtcgccgac cgcccccggc acatcaacct gctgctgttg
      721 ctgcggttga gctgcgagct gatcgccacg gtattagtca ccgtggcggc ggtgcgggcg
      781 ttgtcaccca cctggctggc ggtcctggtc gccgggttgg cgatggtggt ggtcacctac
      841 gtcgtcgtcg gggtgggtcc gcggaccatc gggcgtcagc atcccgatgc cgtcggcctc
      901 gtggtggccg gaccggtgcg ggtgcttggc cggatcctgg gtccgttgtc ccggctgctc
      961 atcttcgtcg ggaacgcgat cacgcccggc cgcggtttcc cggaagggcc gttcacctcc
     1021 gaggtggaac tgcgcgagct ggtcgatatg gcgggtgagc gcggcgtcgt cgaggctggt
     1081 gaggccgaga tgatccattc cgttttcgag ctgggggaca ccgcggcccg tgaggtcatg
     1141 gtcccccgaa ccgagatcgt ctggatcgaa caggacaagt cagtgcgcca agcagtggcg
     1201 ctgtgcctgc gttccggctt ctcccggcta ccggtgatcg cggagagcgt tgatgacatc
     1261 gtcggggtcg tgcacctcaa ggacctggtt gcgcggaccg tgcccgaggt cccagacggt
     1321 ggcgtcgtcg gtgaggtgat gcgacccgcc accttcgtgc cggactccaa gctgctcacc
     1381 ggactgctca aggagatgca ggtctcgcgt aaccacatgg ccgtcgtcgt cgacgagtac
     1441 ggcggtaccg ccggcttgct gacgatcgag gacatcctgg aggagatcgt cggcgagatc
     1501 accgatgagt ccgataccga ggcgcggccg ccgatcgagg atctcgggga cggtagggtt
     1561 cgggtgatca gccggctgcc ggtgatcgac ctgggtgagc ttttcgcggt ggacctcgcg
     1621 gataccgacg tggaaaccgt cggtgggctg ctggcgcagc gcttggggcg ggtgccggtg
     1681 cccggtgccg aggccgacgt cgccggcctg cggttgcggg ccgagggcgg taacgatcgt
     1741 cggggccggc tgcgcatcac taccgtggtc gcatccaggg agcccccccg gcctgacccg
     1801 gccacgaagc tggaccccgt cgcggctgac ccgccgcagg aagcgagcga cacccgtgcc
     1861 tgagcttgag ccggaggacg ccaagatcgt cacactggcg cgttcagcgt tggcccgcac
     1921 cggcgccccg gagggggccg cagtgcggga caccgacggg cgcacctaca ccggcgtcac
     1981 cgtctcgctg gcgtccctgg ggttgaccgc gctgcaggcg gcggtggccg cggcggtggt
     2041 gagtggggcg accggtttgg aagcagcggc ggtggtgtcc gggtcggtgg atcccgcgtc
     2101 attggccgcg gtccgcgagc tcgggcccgc tgccccggtg ctgctggtag accagcgggg
     2161 cgaggtcagc gacgtgctgc gggtggcagg ttagtgatgg ctgcacctgt cgaagagccc
     2221 tttcgggccg gattcgcctg cttggtgggc aggcccaacg tgggcaagtc gacgttgacc
     2281 aacgcgttgg tgggtcagaa ggtagccatc acctccagcc ggccgcagac cacccggcac
     2341 accatccgcg gaatcgtgca ccagccgcac ggccaactgg tgctggtgga cacacccggt
     2401 ctgcaccgtc cccgcacact gctcggtgag cggctcaacg gtctggtgcg cgccacctgg
     2461 tccgaggttg atgcgattgg cttgtgcgta ccggccgact ccgctatcgg ccccggagat
     2521 cgcttcatcg caggcgagct ggccgcgctg tcgcggcgca ccccgctatt cgctgtcgtg
     2581 accaagaccg atctggtggc cccgcaacga gtggccgagc aactcgccgg gctggctgag
     2641 ctggctcgct cggccggcat cggtgagttc gccgagctgg tgccggtgtc tgcggtcgac
//
LOCUS       DASVXZ010000854         1948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1309009, whole genome shotgun sequence.
ACCESSION   DASVXZ010000854 DASVXZ010000000
VERSION     DASVXZ010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1309009"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..1312)
                     /locus_tag="VF788_18070"
     CDS             complement(203..1312)
                     /locus_tag="VF788_18070"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936043.1"
                     /translation="MTVAHRKDSRPVAMLAEIVDGVIGVDTHRDFHQVEIARPSSAVI
                     ATRTFTNDSTGHAEALAWIFGHAPGPRLVLSIEGTRSYGAGLARAAATAGLAVIEAEQ
                     PTRKHRRGKDKSDRIDAHLAVLYALGLDADKLPTPRADGDREALRILLCARQELTTTT
                     TAQTNRLRALLRDGEDTDRRLARARLTDTVLASLARRRLPAHASRQHAVRHGEIRRLA
                     LALRQAARALVTNRAELAAIINDLAPGLLDQPGIGPVSAAQAIVSFSHAGRCRSDAAF
                     AKLAGTSPIEASSGQTTRHRLNRGGDRALNKALHTIATTRMRDDPATQAYLARRRTEG
                     KSDREIRRCLKRYIARQLFRALTAAMTPTTAAAST"
     gene            1559..1909
                     /locus_tag="VF788_18075"
     CDS             1559..1909
                     /locus_tag="VF788_18075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEX8936044.1"
                     /translation="MSLRLLYWIFIRVLNLLLLLGRSSASKDVELLVLRHEVAVLRRV
                     NPKPRLDWADRAVFAALVRRLPQMRRGHRLVTPGTILRWHRRLVAKKWTYPHRVGRPP
                     VEDAVAVLIERMAR"
BASE COUNT          269 a          575 c          736 g          368 t
ORIGIN      
        1 cccaccattg ccgacgcagc ccaattagcg gcaacgcggt gactgatcat ccaccgactc
       61 gcgccctgtg gggttccaaa agtcggccta caccacttga cctggcgatc tgtgtgttca
      121 gctctcagag catgacgctt ctatgtgcgt caagatcttt tagcgtggtt ccgcctgttg
      181 tgtgagtcgc ggtgcgcggg catcaggtgc tggcggctgc ggtggtgggg gtcatggctg
      241 cggtgagggc gcggaatagt tgccgggcga tgtaccgctt gaggcagcgg cggatttcgc
      301 ggtcgctttt gccctctgtc cgtcggcgtg cgaggtaggc ctgggtcgcg gggtcgtcgc
      361 gcatccgagt ggtggcgatg gtgtggaggg ctttgttcag tgcccggtcc ccaccgcgat
      421 tgagtcggtg gcgggtggtt tggccgctgg aggcctcgat ggggctggtc ccggcgagct
      481 tggcgaaggc ggcgtcgctg cggcagcgtc cggcgtggga gaacgagacg atggcttggg
      541 cggcgctgac ggggccgatt ccgggttggt caaggagtcc gggagccagg tcgttgataa
      601 tcgcggccag ctcggcgcgg ttggtgacca gcgctcgggc ggcttggcgt aatgcgaggg
      661 cgaggcggcg gatctcgccg tggcgtacag cgtgctggcg gctcgcgtgg gcaggcaggc
      721 ggcggcgagc caagctggcc aagacggtgt cggtcaaccg cgctcgggct aggcggcggt
      781 cggtgtcctc gccgtcgcgt agtagggcgc gcagccggtt ggtctgcgcg gtcgtggtgg
      841 tggtcagctc ctggcgggcg cagagcagga tgcgcagggc ttcgcggtcc ccatcagcgc
      901 ggggagtggg cagcttgtcg gcgtcgagac cgagtgcgta gagcaccgcc aggtgcgcgt
      961 cgatccggtc ggacttgtcc ttgccccggc ggtgcttgcg ggtgggctgt tcggcctcga
     1021 tcacggcaag ccccgcggtg gccgccgcgc gggctaggcc ggcaccgtag ctgcgggtgc
     1081 cctcgatgga cagcaccagc ctcggacccg gggcgtggcc aaagatccag gccagcgcct
     1141 cggcgtggcc tgtgctgtcg tttgtgaacg tgcgggtagc gatcaccgca ctgctggggc
     1201 gcgcgatctc gacctgatgg aagtctcggt gggtgtccac cccgatgact ccatcgacaa
     1261 tttccgccaa catggccact ggccggctgt ccttcctgtg ggcaacggtc aacgtcggca
     1321 ccggcctggg tacgggtcac cggagtggca catctgtgag gagtcacgcc ttcgggcgga
     1381 catgcttctg atcaggccaa ctggtgggcc aggccggtgc cggcaaccac aatggacaag
     1441 tcatgccaag ggcacgccga agcggccaga tcgtgcgtga gtcacattgg gtcaccagcg
     1501 ccgagcctgg tggtcctcca cccaggagca ccgcaacgac actcacagat cgtgtgccgt
     1561 gtcgttgcgt ctgctctact ggatcttcat ccgggtgctg aacctgctgt tgttgctcgg
     1621 gcgttcgtcg gcgtccaagg acgtcgagct gctggtgctg cgtcacgaag ttgccgtgct
     1681 gcgcagggtc aacccgaagc cgcgcctgga ctgggcggat cgcgcggtgt tcgccgcgct
     1741 tgtccggagg ttgccgcaga tgcggcgggg gcatcgcctg gtcaccccgg gcacgattct
     1801 gcgctggcat cgtcgcctgg tcgccaagaa gtggacgtat ccccaccgcg tcgggcgtcc
     1861 acccgtcgag gacgcggtgg ctgtgctgat cgagcgtatg gcccggtaga accagagctg
     1921 gggatacaag cgaattcagg gtgagtta
//
LOCUS       DASVXZ010000855         1642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1678311, whole genome shotgun sequence.
ACCESSION   DASVXZ010000855 DASVXZ010000000
VERSION     DASVXZ010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1678311"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..1361)
                     /locus_tag="VF788_18080"
     CDS             complement(273..1361)
                     /locus_tag="VF788_18080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936045.1"
                     /translation="MIGTDSHKRTHTAVALDEVGRRLADKTVPATSDGHFALVSWARQ
                     WPQVSFAAEDCRNMTRRLERDLLAAGHRLVRVPTRLMAQARAQGRQPGKSDPIDAEAV
                     ALAALRHHHRLPVAELDGPTRQVKLLVDHRRDLVGERTRVVNRLRWHLHELDPALQVP
                     ARGLRSYCVIDRLGEHLATVTGLVARLARELLHRCQELTMQINTLQRELRDLVKRLAP
                     AVLAIPGCGVLSAAMILGETAGVHRFRSRDAYARFTGTAPIPAWSGNTAGKVRPNRGG
                     NRTLNSALHMIAITQSRGVGPGAIYLDKLTASGKTRTEAIRLLRRRISDAVYTALRTD
                     QRNHLPDNAAQPSTRPDTTLAEPTHPAA"
     gene            complement(1380..>1642)
                     /locus_tag="VF788_18085"
     CDS             complement(1380..>1642)
                     /locus_tag="VF788_18085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936046.1"
                     /translation="TQAVGLVAWRVGVTGVSPRSLRLYVMIVRPVGFARFFVALACGL
                     VACSGCAAHRVPCRAGRGLIGACLVLDRDVPASLGRFLTAMI"
BASE COUNT          260 a          511 c          590 g          281 t
ORIGIN      
        1 tattacgacg gacttccgtg gatcctgtgt gatgcgtgaa cagatcaaac cgttgaaaat
       61 gcgctggtca gggcactatt gttgttgctt cggaatgctc ctatgtcaac tcgcgttcgc
      121 ctttcgctcc gccgggggca ttgtgcgccg cgcggcgtcg tcgtcaagga cctcacggcc
      181 gcggtgcggt cggcctgccg ggccgctcct tgaccccgtc gcctgatccc ggcgcgctgg
      241 cacatcaggc ggagacgggg cggggagaaa gatcaggctg ccgggtgggt cggttcggcg
      301 agggtggtgt cggggcgggt gctgggttgt gctgcgttgt cggggaggtg gttgcgttgg
      361 tcggtgcgca gggcggtgta gacggcgtcg gagatgcgcc ggcgcagcag ccggatggct
      421 tcggtgcggg ttttgccgct ggcggtgagt ttgtcgaggt agatcgctcc cggtccgacg
      481 cctcgggatt gcgtgatcgc gatcatgtgc agtgcgctgt tcagggtgcg gttgccccct
      541 ctgttgggcc ggactttgcc cgcggtgttg cccgaccagg ccggaatggg ggcggtgccg
      601 gtgaaccggg cgtaggcgtc gcgggagcga aaccggtgca ctccggcggt ctcacccagg
      661 atcatcgctg cggacagcac gccgcagcca gggatagcca acaccgcggg ggcgaggcgt
      721 ttaaccaggt cacgaagctc acgctggagg gtgttgatct gcatggtcag ctcttggcag
      781 cgatgcagca gctcgcgggc cagccgggca acaaggccag tgacggtggc caggtgctcg
      841 ccgaggcggt cgataacgca gtagctgcgc aacccgcggg cgggaacctg tagtgcgggg
      901 tcgagttcgt gcaggtgcca gcgcagccgg ttgaccaccc gggtgcgctc acccacgaga
      961 tcccggcggt gatcgactag cagcttgact tgccgggtgg gaccgtccag ctcggcgacc
     1021 ggcagccggt gatgatggcg cagggcggcc agcgcgaccg cttcggcgtc gatcgggtcg
     1081 gatttgcccg gctggcgtcc ctgcgcgcgg gcctgtgcca tcagccgggt cgggacccgc
     1141 accagtcgat gcccggctgc gagcagatcg cgctctagcc ggcgggtcat gttccggcag
     1201 tcctcggccg caaagctcac ctgaggccac tgccgggccc agctaaccag cgcaaagtgc
     1261 ccgtcactgg tcgccggcac cgtcttgtca gccagtcggc gtccaacctc gtcgagggcg
     1321 accgcggtgt gggtgcgctt gtgggaatcg gtcccgatca tcaccatatg cagctccgct
     1381 cagatcatcg ctgtcaggaa acgaccgagc gaggcgggca cgtctctatc gagcaccagg
     1441 caggctccta tcaagccacg ccccgctcgg cacggcaccc ggtgggccgc acatcccgaa
     1501 caagccacca acccacaggc cagggcaacg aagaagcgag cgaaccccac cggacgaacg
     1561 atcatgacat agagacgaag agaccgtggg ctcactccgg tcactccgac tctccaagcc
     1621 actaggccga cagcttgtgt gt
//
LOCUS       DASVXZ010000856         1749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_961126, whole genome shotgun sequence.
ACCESSION   DASVXZ010000856 DASVXZ010000000
VERSION     DASVXZ010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_961126"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..426)
                     /locus_tag="VF788_18090"
     CDS             complement(178..426)
                     /locus_tag="VF788_18090"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8936047.1"
                     /translation="MDEDLTVLVEGRTGVTWFLGALESTFAGTPFAARLRYTRTWIHD
                     DEHGWRVVAAHASPGDRHSLRTDRPGCGQTSPGSSGPS"
     gene            1504..>1749
                     /locus_tag="VF788_18095"
     CDS             1504..>1749
                     /locus_tag="VF788_18095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936048.1"
                     /translation="MFQLLFIETRSWLWVIPLMWSPAAAAVVARLALGEGFADVSFRV
                     GGRRGWQAMTVAVLFPIAIGLPVYTIAWMTGLARFAPR"
BASE COUNT          290 a          550 c          541 g          368 t
ORIGIN      
        1 accttccatc gagtcccgcc gggtcctgct tggccagggc cgaccgtcca tagcgtccca
       61 cctcgtccag ccggtccggc cgcagcccat ggcatcctta ctgccgtttc tactacggct
      121 accagggacc gtcgcagagg agaatgctca ccctttctgc agtcgtggcg tgggtggtca
      181 cgatggaccg ctcgatccag gactcgtctg gccgcacccc ggccggtcag tccgaaggct
      241 gtggcggtca cccgggctgg cgtgggcggc gacaacgcgc cagccatgtt cgtcgtcgtg
      301 gatccacgtg cgggtgtacc gcagccgcgc agcgaatggc gtaccagcga acgtgctctc
      361 cagcgcgcca aggaaccacg tcacaccggt acgcccctcg acgagcacag tcaggtcttc
      421 gtccatgacc ttcgtcagga cctgctggtg tgagcggtgc aggtggagtc gtccctgctc
      481 ggtatcacac ttgccgtgtg cgctcgatca tagaggcctc ttcccctaac gtaacgacgt
      541 gcagtggagc tgcggatcaa caaacagcat cccggcatcg cacccggcgg cccaacttca
      601 ttttcgcctc tccgccaatc tgatcgccgc ctccggtgga tttggccatc tccagctgga
      661 ctcgacaccg atcctgccct tcacagatcg gagtgccctc gtagatccgg gtgatttctc
      721 acccatccga agccgacctg gcaatctact cagaggacag tcggtgagca ggggaaacat
      781 gtctcgttac agtaattctc agcagttctt gctgttaccc gacgtctcac ggcctggaaa
      841 cgacctgatc ttggtcgcct atgtcctcac gcaaccgata cctggggccg tattctctat
      901 cccggacagc gattatcagg acccgctacg ggacagtgcc ggtcatgacc gaacagttcg
      961 tctgattagg gcggatactt ctcgagggta cgtgctggtg ccggaggtta gtggttgttt
     1021 caggtgggta aagggtggag atatcacaag ctggttgtcc ctgccaaagg cgagacggtg
     1081 ccggagcggg tatcccgccg cgtcggcagg cttgtcagga agcgggccgg ggcagggtcc
     1141 atgtggagca cccggcggtt gaacgacatg gacccctgcc ccaggttttg ctaagccttc
     1201 ggtgccgacg cgacgggagg ccagtgcagc tggtgaccgc caccgctttc aggcccagcc
     1261 ccatggaccc tcccagagcc aaggctcgcc ggaggcgtct gtgggagtgc caggagccag
     1321 tcccttgact gtcgtctcag ctgacaggaa cctcctcggt agaacatctc gatcaaatac
     1381 gcctggagat cgacatggtc gccgccggaa aagacctgac gtcgttcagt ccggtgccga
     1441 ggtccgactc cgtgcgcggc agggtctggc gatctatttc gggatggttg ttctattctc
     1501 gcggtgttcc agcttctctt tatcgagacc cgttcctggc tgtgggttat cccgctcatg
     1561 tggtcacctg ctgcggcggc ggtggtggct cgtctggcgc tgggcgaggg ttttgctgat
     1621 gtatctttcc gtgtcggtgg tcgccgcggg tggcaggcca tgacggtggc cgttctcttt
     1681 ccgatcgcca tcgggcttcc cgtgtacacc atcgcgtgga tgacaggcct ggcgagattc
     1741 gcaccgcga
//
LOCUS       DASVXZ010000857         6153 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_602690, whole genome shotgun sequence.
ACCESSION   DASVXZ010000857 DASVXZ010000000
VERSION     DASVXZ010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6153
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602690"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VF788_18100"
     CDS             <1..421
                     /locus_tag="VF788_18100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEX8936049.1"
                     /translation="VTRGEKRFRLLDIDNTSAPYLVGSVEWVPDDDPVEEESMLVPML
                     ASSAREAHRQYCWVAWQHGEWDEPKEDVDVATLAHLLAADCLLTLEDRQALLEECDPV
                     GRLRMVRQLLVRETAFLRTLRAVPVPLNQFAVKASNN"
     gene            complement(428..991)
                     /locus_tag="VF788_18105"
     CDS             complement(428..991)
                     /locus_tag="VF788_18105"
                     /inference="COORDINATES: protein motif:HMM:NF022278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2567 domain-containing protein"
                     /protein_id="HEX8936050.1"
                     /translation="MSEMQVEVQPAPEPVPLPRAAVVPADVAPALTVLGAVALLGLPL
                     GALWSWLAPPEFVARSERALTPGGVLPFVGQSEHRFDDMATFMLLGLSAGLLTGAALW
                     LYRRRRGPLLLIAAVLGSVIAAWLAMDTGLWLVANSYPDLANTGAPFPQPPVLESAWV
                     LVGQPFAVAVAFCITTAWNRSEDLGSG"
     gene            complement(988..1173)
                     /locus_tag="VF788_18110"
     CDS             complement(988..1173)
                     /locus_tag="VF788_18110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936051.1"
                     /translation="MTFCDVCGRPADEEDHARCARRRGLDPPRYCPQCARRMVVQVMP
                     AGWSARCSAHGAQPGWE"
     gene            complement(1170..2186)
                     /gene="bioB"
                     /locus_tag="VF788_18115"
     CDS             complement(1170..2186)
                     /gene="bioB"
                     /locus_tag="VF788_18115"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006237262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HEX8936052.1"
                     /translation="MAVSQVDVLAIARERVLAQGTGLSEQQVLDVLQLPDDRLEELLA
                     LAHQVRMRWCGPEVEVEGIVSVKTGGCPEDCHFCSQSGQFNTPVRAAWLDIPGLVEAA
                     KQTAATGATEFCIVAAVRGPDRRLMSQVKAGIEAIRAEPETAEINIACSLGMLTQEQV
                     DELAAIGVHRYNHNLETARSYFPTVVTTHTWEERFQTLRMVREAGMEVCCGGIIGLGE
                     TVAQRAEFAAQLAALDPDEVPMNFLIPQPGTPYESYDVVAGTEALETVAAFRLALPRT
                     ILRFAGGRELTLGDLGAEQGMLGGINAIIVGNYLTNLGRPAQADLDMLTDLRMPIKAL
                     GQTL"
     gene            complement(2252..2497)
                     /locus_tag="VF788_18120"
     CDS             complement(2252..2497)
                     /locus_tag="VF788_18120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936053.1"
                     /translation="MDPLKRERKTMTEIVVENTLERTWQIPAHGGTGPVTLVVRMPNV
                     LIIDSRGRHILVAPEQADLVSTKMGEIADWIRNASAG"
     gene            2586..3434
                     /locus_tag="VF788_18125"
     CDS             2586..3434
                     /locus_tag="VF788_18125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8936054.1"
                     /translation="MPGNPHTSVRSRQVAAALRELREQAGLSGAEVAKRMGMSPSKIS
                     RIETGNSGLQIEDVAALLGLYQVPAATRDELLNLVRRSEERGWWTRQPGLPQLWRSLI
                     DFEAKATRVQNYEALVVPGLLQTAEYARAIIQGVAPTVSEVELDNLVAARMARQAVLT
                     RASAPQFFAVVDEGVLRRPVGEPGVMNRQLHHLLGAAEQPHVTLRVVPLTAGAYAGLR
                     GPFVVLEFAEEPALVFIENHGTGLFLEEEADLAAYRLALGTILHVALAPAATTELIAQ
                     IAAKLS"
     gene            3483..3683
                     /locus_tag="VF788_18130"
     CDS             3483..3683
                     /locus_tag="VF788_18130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8936055.1"
                     /translation="MPTLDLSGARWRKSSRSTANANCVEVAVTGGIVAVRDSKNPTGS
                     VLAVPPPAWTAFTTTVRIGDLG"
     gene            complement(3779..4261)
                     /locus_tag="VF788_18135"
     CDS             complement(3779..4261)
                     /locus_tag="VF788_18135"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8936056.1"
                     /translation="MANSHLVHGHGGDSRSEWDMLDRVERPCAYACATIGSDVVAVGR
                     AVADTGWAGVFGMATLPEVRGKGAARKVLAALAAWAGEHEAGRMYLQESVTTSRLSGC
                     TSGRVSVNTVTATRPEALLAALFKLSFTQSVEGVEAQLNADRARHPRLSCEWRQRRSW
                     "
     gene            complement(4268..5164)
                     /locus_tag="VF788_18140"
     CDS             complement(4268..5164)
                     /locus_tag="VF788_18140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005450093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-70 factor"
                     /protein_id="HEX8936057.1"
                     /translation="MSDHTTDPATDAFVTHRNLLFTIAYEMLGSAADAEDVLQETWLR
                     WVKVDLGQVREQRAYLVRITTRQSLNRLRTMRRRKEAYVGPWLPEPLLTAPDVAEDVE
                     LAESVSMAVMLVLETLSPTERAVFVLREAFDVSYDEIAAAVDKSPAAVRQIAHRARQH
                     VDARRPRKVVSPSEIRAALEAFQRALETRDLQGLLDVLAPEVVLVSDGGGVKQAALRP
                     IIGAEKVVRFIVGGSGKTEGTLTSDPIVVNGNLALVVRLDGEIDGVVAIRVEDARITG
                     LYYVRNPEKLTRVESETPLTRR"
     gene            complement(5455..>6153)
                     /locus_tag="VF788_18145"
     CDS             complement(5455..>6153)
                     /locus_tag="VF788_18145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005450094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8936058.1"
                     /translation="TLVCGEVLGPYLHPRGRRSVAKRLAKLGVTVLEGPDVKVTAVTR
                     DVVQLGDGRKLPSKVTIWTAGFGVAALAGPSGLSTDALGRLLTDETLTSVDDVRIVAA
                     GDSAAPSDLPFRMSCQAAGPLGAQAADTVLSRIAGEQPAPINLGFAGQCISLGRRAGI
                     FQFAYKDDTAKRFYLGGRPGAKLKEFVCKHTIKQLADEARKPGSYTWAKDDKRQHLLQ
                     AKRGEALAIAERAA"
BASE COUNT         1023 a         2098 c         2036 g          996 t
ORIGIN      
        1 cgtcacccgt ggtgaaaaac gattcaggct cctcgatatc gataacacct cggcgcccta
       61 tctcgtcggc agcgtcgagt gggttcccga tgacgacccg gtggaggaag aatccatgct
      121 cgtgccgatg ctggccagct cggcgcggga agctcaccgg cagtactgct gggtcgcgtg
      181 gcagcatggg gaatgggacg aacccaagga agacgttgac gtcgccacgc tggcgcacct
      241 gctcgccgcg gactgtttac tgactctgga ggaccggcag gcgctactgg aggaatgcga
      301 tccggtgggc cggttacgca tggtacgcca gctgctggtg cgggagacgg cgttcctgcg
      361 gacgttgcgc gcggtgccgg ttccgttgaa ccagttcgcg gtcaaagcca gcaacaactg
      421 acttcactca cccacttccc aggtcctcgc tacggttcca ggccgtggtg atacagaagg
      481 ccactgcgac agcgaaaggc tgcccgacaa ggacccaggc cgactccaat accggcggtt
      541 gcggaaacgg cgcgccggtg ttcgccagat cgggatagct gttggcgacc agccacaggc
      601 cggtgtccat cgccagccac gccgcgatca ccgagcccag caccgcggcg atgagaagca
      661 gtggcccacg ccgccgccgg tagagccaca atgccgcgcc ggtgagcaga cctgcggaca
      721 gtcccagcag catgaacgtc gccatgtcgt caaagcggtg ttcgctctgg ccgacgaacg
      781 gcagtacccc gccgggggtc agagcgcgct cggaacgcgc gacgaactcg ggcggtgcaa
      841 gccaggacca cagcgcgccc agcgggaggc ccagcaacgc gaccgcgccc agcacggtca
      901 gcgcgggcgc cacatcagcc ggaaccaccg cggcacgcgg caacggcacc ggctcgggtg
      961 ccggttgcac ctccacctgc atctcgctca ttcccatccc ggctgggcac cgtgcgcact
     1021 acaccgggcc gaccagccgg ccggcatcac ctgcaccacc atccggcgcg cgcactgcgg
     1081 gcagtaccgc ggcggatcca gacctcggcg acgggcgcat cgcgcatggt cctcttcgtc
     1141 ggccgggcgc ccgcagacgt cgcagaatgt cataacgtct gccccaacgc cttgatcggc
     1201 atgcgcaggt cggtgagcat gtccaggtct gcctgcgcgg gccgcccgag gttggtcagg
     1261 tagttgccca cgatgatcgc attgatgccg cccagcatgc cctgttcggc accgagatcg
     1321 ccgagggtga gctcgcggcc accggcgaaa cgcaggatgg tgcggggtag cgcgagccgg
     1381 aatgccgcga cggtctcgag cgcctcggtg cccgcgacca cgtcatagct ctcatacggg
     1441 gtgccgggtt gcgggatgag gaagttcatc ggcacctcat cagggtccag cgcagccagc
     1501 tgcgcggcga actcggcgcg ctgggccacc gtctctccca ggccgatgat gccgccgcag
     1561 cagacctcca tcccggcctc acgcaccatt cgcagcgtct ggaagcgctc ctcccaggtg
     1621 tgcgtggtta ccacggtcgg aaaatacgag cgggcggtct ccaggttgtg gttgtagcgg
     1681 tgcaccccga tcgcggccag ctcgtccacc tgctcctggg tgagcatgcc cagcgagcag
     1741 gcgatgttga tctccgcggt ctccggctcg gcccggatcg cttcgatgcc ggctttgacc
     1801 tgcgacatca gccggcggtc cggtccgcgc accgcggcga cgatgcagaa ctcggtcgcc
     1861 ccggtggccg cggtctgttt ggcggcttcg accagtccgg ggatgtcgag ccacgccgcg
     1921 cgtactgggg tgttgaactg accggactgg gagcagaagt ggcagtcctc cgggcaaccg
     1981 ccggtcttga cgctgacgat gccctcaacc tcgacctccg ggccgcacca ccgcatccgc
     2041 acctggtggg ccagcgcgag cagctcttcc agccggtcat ctggtagctg cagcacgtcg
     2101 agaacctgct gttcggagag cccggttccc tgtgcgagta cccgttcccg ggcgatggcc
     2161 agcacgtcga cctgcgagac ggccacgggc tactcctctc gacgacggcg ctcggtgctc
     2221 ccggccagtc tgccgcacgg ttcatcacga ctcagccggc ggatgcgttg cggatccagt
     2281 cagcgatttc gcccatcttg gtactcacca ggtcggcctg ctcgggtgcg acgaggatgt
     2341 gtctgccccg cgagtcgatg atcagcacgt tgggcatccg cacaacgagg gtgaccgggc
     2401 ccgtgccacc gtgcgcgggg atctgccagg tcctctccag ggtgttctca accacgatct
     2461 cggtcatggt cttgcgctca cgcttcagcg ggtccataac cgaaccgtcg aatattgcaa
     2521 gtgatgcaag caataacgcg atcgagtgat tggatcagat gccgcgcagg tgcatagtgc
     2581 gcgctatgcc cggtaatccc cacacctcgg tccggtcccg gcaggtcgcc gccgcgttgc
     2641 gcgagctacg cgagcaggcg gggctgtctg gggcagaggt cgccaagcgt atgggcatgt
     2701 cacccagcaa gatcagccgg atcgagaccg gcaacagcgg cctgcagatc gaggatgtcg
     2761 cagctttgtt ggggctatat caggtgcccg cggctacccg cgacgagctg ctcaacctgg
     2821 tgcggcgctc ggaggaacgg ggttggtgga ccaggcaacc cgggctgccc cagctgtggc
     2881 gcagcctgat cgacttcgaa gccaaggcca cccgcgtcca gaactacgag gccctcgtgg
     2941 tgcccgggct gctacagacc gccgaatacg cgcgggcgat catccaagga gtcgccccca
     3001 cggtctccga ggtcgaactt gacaaccttg tcgctgcccg gatggcccgt caggcggtgc
     3061 tgacccgggc cagcgccccg cagttcttcg cggtagtcga cgagggtgtg cttcgccggc
     3121 cggtcggcga acccggagtg atgaaccggc aactacacca cctgctcggc gcggccgagc
     3181 aaccccacgt gacgctgcgg gtggtgccgt tgacggccgg ggcgtacgcc ggactacggg
     3241 ggccattcgt ggtcctggag ttcgccgagg aacccgcgct ggtattcatc gagaaccacg
     3301 ggaccggcct cttcctggag gaagaggccg atctggccgc ctaccggctg gccctgggga
     3361 ctattctgca cgtagccctt gcacccgctg caacaacgga gctgatcgcc cagatcgccg
     3421 ccaaactcag ctgaatttgc ggtcttgcgg agggacgcac gaatactgga gaggagtgcg
     3481 ggatgcctac gctggacctc agcggcgccc gctggcgaaa gagcagccgc agcaccgcca
     3541 atgcgaactg tgtcgaggtc gccgttaccg gtggcatagt tgccgtgcgc gactccaaga
     3601 acccgaccgg cagcgtgctg gccgtcccgc cacccgcctg gaccgccttc accaccacgg
     3661 tccgcatcgg cgacctcggc tgaccttcgc ctcgcggcac gatccggcga tgccgcccat
     3721 cgaaaaccgc ttgccatcgt cgagcgcgat atcgccgagc tccgcgaaca actcgccctc
     3781 accagctccg acgctgccgc cactcacagg atagccgcgg gtgtcgagca cgatctgcgt
     3841 tgagctgcgc ctccacgccc tcaacgctct gcgtgaaact cagcttgaac aaggccgcga
     3901 gaagagcctc aggtcgagta gctgtgacgg tattcactga aacccgtccg ctcgtacagc
     3961 cggagagccg ggatgttgtc acgctctcct ggagatacat gcggccggct tcgtgttcac
     4021 cggcccaggc ggccagcgcg gccagcacct tgcgggccgc gcctttgccg cgtacttcgg
     4081 gaagcgtggc cataccgaac actcccgccc agccggtgtc ggcgaccgcg cggcccaccg
     4141 cgacaacatc gctcccgatc gtcgcgcagg cgtaggcaca cggccgctct acacgatcga
     4201 gcatgtccca ctcggaacgg gagtccccac catgaccatg cacaaggtgg ctattcgcca
     4261 ccggtattca tcgccgggtg agcggggtct cggattcgac gcgggtcagc ttctcagggt
     4321 tgcggacgta gtagaggccg gtgatgcggg cgtcctcgac acggatcgct acgacgccgt
     4381 caatctcgcc gtccaggcgt acgacgagtg ccaggttgcc gttgaccacg atggggtcac
     4441 tggtgagcgt gccttcggtc ttgccggagc cgccgacgat gaagcggacc accttctcgg
     4501 cgccgatgat cggccgcagc gcggcctgct tgacgccgcc gccgtcgctc acaaggacga
     4561 cctcaggggc gagcacgtca aggaggccct gcaggtccct ggtttcgagc gcgcgctgga
     4621 acgcctccag agccgcccgg atctcgctcg gggagaccac cttgcgaggg cggcgggcat
     4681 cgacgtgctg gcgggcgcgg tgggcgatct ggcggacggc cgcggggctc ttgtcgacgg
     4741 cggccgcgat ctcgtcgtag ctgacatcga aggcctcgcg cagcacgaag acggcgcgct
     4801 cggtcggcga cagtgtttcg aggacgagca ttaccgccat cgacacactt tcggcgagct
     4861 cgacgtcctc ggctacgtcc ggcgcggtga gcagcggctc gggcagccag gggccgacat
     4921 acgcctcctt gcggcgcctc attgtgcgca gccggttgag cgactgccgg gtcgtgatcc
     4981 ggaccaggta ggcgcgctgc tcgcgcacct gtcccaagtc gaccttgacc caccgcagcc
     5041 aggtttcctg gaggacgtct tctgcgtcgg cagccgatcc gagcatttcg tatgcgatgg
     5101 tgaagagcag gttgcggtgg gtgacgaagg cgtcggtcgc cgggtcggtg gtgtggtcgc
     5161 tcatgtctct accctcgccg tcgcggccgg ccctgattgc cgaaggcctt caagcgtgca
     5221 tccaccgcaa ggtccttttc gttggtagcc gttccatctg acccgcctgt ttggtgcgat
     5281 cgagagtgga caccacccgg cgcacggctg tgacacgcca agttgagacg atccgttgct
     5341 cagaggacca ccgatgaacg catgcatgag gcggcgcccc gcagtaagcg cgtccccgca
     5401 cgagatgcag tccagatccg ttgatagtcg accggaccga ccacgaatgc ctggctaggc
     5461 cgcccgttca gcgatggcca gcgcctcgcc gcgcttggcc tgcagcagat gctggcgctt
     5521 gtcatccttg gcccaggtgt acgaaccggg cttgcgtgcc tcgtccgcca gctgcttgat
     5581 ggtgtgcttg caaacgaact ccttgagctt cgcgccaggg cggccgccga ggtaaaaccg
     5641 cttcgcggtg tcatccttgt aggcgaactg gaaaatgccg gcgcgacgac ccaggctgat
     5701 gcactggccg gcgaacccca ggttgatggg cgcgggttgc tcacccgcga tccggctgag
     5761 caccgtgtcg gcggcctgcg cacccagagg acccgcggcc tggcagctca tccggaacgg
     5821 caggtccgac ggtgccgccg aatccccggc cgcgacgatg cgcacgtcgt ccacgctggt
     5881 caacgtctcg tccgtgagca ggcggcccaa ggcgtcggtg ctcagcccgc tggggccggc
     5941 cagggccgcc acgccgaatc cggcggtcca gatggtcact ttgctcggca gcttgcggcc
     6001 gtcaccgagc tgcacgacat cgcgagtcac agccgtcacc ttcacgtcgg ggccttcgag
     6061 cacggtcaca ccgagtttgg ccagccgctt ggcgaccgag cgtcgacccc gagggtgcag
     6121 gtacgggccg agcacctcac cgcagaccag ggt
//
LOCUS       DASVXZ010000858         2663 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1134616, whole genome shotgun sequence.
ACCESSION   DASVXZ010000858 DASVXZ010000000
VERSION     DASVXZ010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2663
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1134616"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..749)
                     /locus_tag="VF788_18150"
     CDS             complement(<1..749)
                     /locus_tag="VF788_18150"
                     /inference="COORDINATES: protein motif:HMM:NF033580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEX8936059.1"
                     /translation="MSVYLVEATKASCRVSGCACHDRVPRYPSDVTDAQWALLRPQAQ
                     AVMAELRRSPAGRPMEHDLRAVLDAIGYVSRYGIEWRALPVDFPPWEAVYAFFERWSA
                     RGLPQGLVDRLRGRLRVALGRSELPTAGSIDSQSVKAADTVGAASRGFDGGKKINGRK
                     RHIAVDTVGLVLTVIVTAASVQDRDGAFRLLAQLRERFSTITLVWADGGYAGRLVSWA
                     CQVLALTVTIVKRGEDTTGFVVLPRRWVVERT"
     gene            1124..2230
                     /locus_tag="VF788_18155"
     CDS             1124..2230
                     /locus_tag="VF788_18155"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936060.1"
                     /translation="MEIVYERVAAIDVGKKIVAVAVRTPGERAGKRRVQVRKFSTYYR
                     TLSEMVAWLVGEGVTHVTMEATGVYWRPVFHALCEAERPLEVLLVNARHVKNVPGRKS
                     DALDAVWLAELTECGLLRGSFIPPAQIAVIRELTRYRKKLIQARTSELQRLAKVLEDG
                     GIKIDSVASTLTTLSARDMIEALIRGERDPAVLADLARGRMRSKIPDLTLACAGRFGA
                     QHALMCTLHLEHIDHLTDMIARLDGRIDEVSLPFARQIELLATIPGIGERTAQVIISE
                     IGIDMTRFPTAAHLASWAGLCPGNNESAGKHRSARTRKGNTELCAVLTECAWAAGRTA
                     TYVGAQFRRFHRRFGKKGGQKAATATAHTLIVII"
     gene            2234..2377
                     /locus_tag="VF788_18160"
     CDS             2234..2377
                     /locus_tag="VF788_18160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936061.1"
                     /translation="MLAHSTAYHDLGSDYFTRRIDNPDTRKRQLIRELEALGHKVTLE
                     PTA"
BASE COUNT          479 a          940 c          817 g          427 t
ORIGIN      
        1 gtccgttcca caacccaccg gcggggcagc acgacgaatc ccgtggtgtc ctcaccgcgc
       61 ttgacgatgg tgaccgtcaa ggccagcact tggcaggccc agctcaccag gcgaccggcg
      121 tatccgccgt cggcccagac cagggtgatc gtggagaacc gctcgcgcag ctgggccagc
      181 agccgaaacg ccccgtcacg atcctggacc gaggcggcgg tgacgatcac ggtcaggacc
      241 aggccgacag tgtccacggc gatgtgccgt ttgcggccgt tgatcttctt cccgccatcg
      301 aatcctctgc tcgcagcgcc gaccgtgtcc gccgccttca ccgactgcga gtcgatcgat
      361 ccggccgtgg gtagctcgga ccgacccaag gccacccgca gccgcccacg aagccggtcc
      421 accagaccct gtggtaggcc gcgcgcgctc caccgttcga aaaaggcata caccgcctcc
      481 cagggcggaa aatccaccgg caacgcccgc cactcgatgc catagcgact cacatagccg
      541 atcgcgtcca gcaccgcccg cagatcatgc tccatcggtc tgccagccgg gctgcgacgc
      601 aactcggcca tcaccgcctg ggcctgaggg cgcagcagcg cccactgggc atcggtcaca
      661 tccgagggat aacgcggcac gcgatcgtga caggcacatc cggacacccg gcaactggcc
      721 ttcgtggcct cgacaaggta gacagacatc cccgggcttc tggtagatcg agtaggtggc
      781 actcctcggc taccaggagc ccattctcat tccccgatgc gacacgccac cgtgatcaaa
      841 tcgctaccca ccctcaccac aggcccaact caaccaacac catttaccaa cagattttga
      901 tgccgctggt gtggcgctcg cgggtcgttg aaacttgggg tgcgtcgccc gctgatgtcg
      961 tagtgccttg gtgcggggtg agcccgtcca acagattgat gctggagccc gtcccggtgg
     1021 ggtactccgg gttgctgcct gttcgagcgc gagtctcaga ctcttgatgt tgatgcgggt
     1081 tccgcgggtg acgcgcctac tggtcgtggg gagggagcct gtagtggaga tcgtgtatga
     1141 gcgagtggcc gcgatcgatg ttggcaagaa gatcgttgcg gtggcggtgc ggacgccggg
     1201 cgagcgagcg gggaagcgcc gggtgcaggt gcgcaagttc agcacctact accggacgct
     1261 gagtgagatg gtggcctggc tggtcggtga gggcgtgacg catgtgacga tggaagcgac
     1321 cggggtgtac tggcggccgg tgttccatgc gctgtgcgag gctgagcggc cgctggaggt
     1381 gctgctggtc aatgcccggc atgtgaaaaa cgttccgggg cgcaagagtg atgctctgga
     1441 cgcggtgtgg ctagcggagc tgaccgagtg cgggttgttg cggggcagtt tcatcccgcc
     1501 ggcgcagatc gcggtgatcc gggagttgac ccgctaccgc aaaaagctca tccaggcgcg
     1561 cactagcgag ctccagcggc tggcgaaggt ccttgaggac ggcgggatca agattgactc
     1621 ggtggcctca acgctgacca ctctctcggc ccgggacatg atcgaggccc tgatccgcgg
     1681 cgagcgcgac ccggcggtgc tggcggatct ggcgcgtggg cggatgcgca gcaagatccc
     1741 cgacctgacg ttagcctgcg cgggccgctt cggtgcgcag catgcgctga tgtgcaccct
     1801 gcacctagaa cacatcgacc atctcaccga catgatcgcc cggctggatg gccgtatcga
     1861 tgaggtcagc ctcccttttg cccgccagat cgagctgctg gccacgatcc cggggatcgg
     1921 tgagcgcacc gcccaggtca tcatctccga gatcggcatc gacatgaccc gattccccac
     1981 cgcagcacac ctggcctcgt gggccggact gtgccccggc aacaacgaat ccgccggcaa
     2041 gcaccgctcc gccaggaccc gcaagggcaa caccgagctc tgcgcagttc tcaccgaatg
     2101 cgcctgggcc gccggacgca ccgccaccta cgtcggcgcc caattccgcc gcttccaccg
     2161 ccgcttcggc aaaaagggcg gccagaaagc cgccaccgcc accgcgcaca ccctcatcgt
     2221 catcatctga catgtgctcg cccacagcac cgcctaccac gacctcggct cggactactt
     2281 cacccgccgc atcgataacc ccgacacgcg caaacgccaa ctcatccgcg aactcgaagc
     2341 cctcggccac aaggtcaccc tcgaacccac cgcctaacca ccagctcacc tcctaccaga
     2401 ccccgccggt ccggtaatga cccctaccct cagaaacccc tgtggtcacc gaaaaccccg
     2461 cgtgatcacc tgtagtttcg tctcaggctc taagagcaca cccacccccc ttcccccgcc
     2521 ctgaccaacc tgcgcccagc agcccccggc gtccaggaca atcagatgct gtgtgcgcag
     2581 gtgcccgcgg tggtgccgcg cagcctgcgg ggctgtccct cccaggtcca gggcgccttc
     2641 ggcgtcgcta gcgcgatgcc gct
//
LOCUS       DASVXZ010000859         5386 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1679232, whole genome shotgun sequence.
ACCESSION   DASVXZ010000859 DASVXZ010000000
VERSION     DASVXZ010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5386
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1679232"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VF788_18165"
     rRNA            complement(<1..358)
                     /locus_tag="VF788_18165"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(791..2077)
                     /gene="tyrS"
                     /locus_tag="VF788_18170"
     CDS             complement(791..2077)
                     /gene="tyrS"
                     /locus_tag="VF788_18170"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEX8936062.1"
                     /translation="MRDDTGVGMHILDELTWRGLIAHSTDLDALRRDCDAGPLTLYCG
                     FDPTAPSLHLGNLVQILTLRRFQRAGHRPLALVGGATGLVGDPKPTAERVLNTKDVVA
                     GWVERIRGQIEPYLDFHEPHAATMVNNLDWTQPLPAIDFLRDVGRHFRVNRMLAKEAV
                     SARLNSESGISFTEFSYQLLQAMDYLELYRRYGCTLQTGGSDQWGNITAGVDLIHRVE
                     QRSVHALATPLITKADGTKFGKTETGTIWLDPKLTSPYAFYQFWINADDRDVISYQKV
                     FTELSGADIAELERKTVERPHAREAQRVLAAEVTALVHGPGEARRAMVASEALFGRGE
                     LRDLDGPTLDAAMAEAPTGAVLLADRPTIVDLLVVSGLAESKGAARRTIREGGASVNN
                     AKVGDEGWTPAESDLLPGGWLVLRRGRRHTAGVRVR"
     gene            complement(2067..2696)
                     /locus_tag="VF788_18175"
     CDS             complement(2067..2696)
                     /locus_tag="VF788_18175"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEX8936063.1"
                     /translation="MTVGTFARGRLAVDVLPAARLLLGCHLVADRPDGQIVVRLVELE
                     AYRGADDPAAHSYRGRTARNAVMFGPPGHLYVYFIYGMHFCANISCLPNGQAGAVLLR
                     AAEVVSDLEVARRYRPTARSDIELARGPARLATLLGLGREHNGLDLADPSSPVRLLLG
                     DPVPASLVRTGPRVGVAAAQDRLWRFWVDGSQAVSTYRRHRAAGTAHAG"
     gene            complement(2693..4093)
                     /gene="argH"
                     /locus_tag="VF788_18180"
     CDS             complement(2693..4093)
                     /gene="argH"
                     /locus_tag="VF788_18180"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEX8936064.1"
                     /translation="MTGLWGARFSGKPADALAALSASTHFDWRLARYDIRGSRAHARV
                     LHDAGLLNDGELAAMRDALDRLDTDVESGAFVPAPEDEDVHTALERGLIERAGPELGG
                     RLRAGRSRNDQVATLLRMWLRDGARRVAAGTLDVIDALLDQAQAHPDAPMPGRTHLQH
                     AQPVLLAHHLGAHVQALLRDVGRLRDWDARAAVSPYGSGALAGSSLGLDPAAVAAELG
                     FNAPVENSIDGTASRDFAAEAAFVLAMLAVDLSRIAEEIILWASAEFSYVALDDAYST
                     GSSIMPQKKNPDVAELARGKAGRLIGNLTGLLATLKAQPLAYNRDLQEDKEPLFDSVD
                     QLELLLPAMAGMVGTLSFQTYRLAELAPAGFTLATDLAEWLVRQGVSFRTAHQAAGSC
                     VRLAESRGVGLAELSEMELAAVHPELTLDVRRVLNVDGSIASRDAYGGTAPDRVAEQL
                     ERARQAVGEHRGWITL"
     gene            complement(4090..5307)
                     /locus_tag="VF788_18185"
     CDS             complement(4090..5307)
                     /locus_tag="VF788_18185"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020502386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEX8936065.1"
                     /translation="MTERVVLAYSGGLDTSVAIGWIGEETGAEVVAVAVDVGQGGEDL
                     ETIRQRALACGAVEAVVTDARDEFAEQYCLPALQANALYMNRYPLVSALSRPLIVKHL
                     AAAAKYHGASTVAHGCTGKGNDQVRFEVGIGTLAPDLRVIAPVRDYAWTREKAIAYAE
                     ERNLPIDVTKRSPFSVDQNLWGRAVETGFLEDLWNAPTKDVYSYTCDPTEWKAPEELV
                     LSFESGVPVAIDGAPVTVLEAIKQLNARAGAHGVGRLDLVEDRLIGIKSREVYEAPAA
                     IALITAHQELENVTVERDLARYKRSAEQRWSELVYDGLWFSPLKRALDAFVADSQRHV
                     TGEIRIELAGGRATVTGRRSAQSLYDFNLATYDAGDTFDQSLAKGFVQLWGLPSKLAA
                     QRDLQATHRDLSS"
BASE COUNT          954 a         1865 c         1655 g          912 t
ORIGIN      
        1 attccccact gctgcctccc gtaggagtct gggccgtgtc tcagtcccag tgtggccggt
       61 cgccctctca ggccggctac ccgtcgtcgc cttggtaggc catcacccca ccaacaagct
      121 gataggccgc gggcccatct ctagccgcac aaggctttcc accccacaac atgcgccgtg
      181 gagtcatatc cggtattaga cccagtttcc caggcttatc ccagagctag aggcaggtca
      241 cccacgtgtt actcacccgt tcgccgctcg tgtaccccga agggccttac cgctcgactt
      301 gcatgtgtta agcacgccgc cagcgttcgt cctgagccag gatcaaactc tccattgaat
      361 gactcaacag aaaacaacac ccaccccaca acaggacagg catcgcactg atcactagca
      421 caacaaaaca aacaaacatg gcactaacaa aaaattcagc acactgttga gttctcaaag
      481 aacaaacaca caccatcacc aacgaccgag acagtagtta gatccgggat gactcttgcc
      541 aattttccgg tcccgtgctg cgaacccctg tcaaaggttc gcttccgatc ccggcgactc
      601 atcaagctta gcaggccctc tgagtcgact tccccgcggc cccggtctga ctctcagaac
      661 catctgtttg ctgagcgctt cgaccgttgc tccgcggggc gaagggaaag gtacggcccg
      721 cagtatgcag aagtcaaatc ggcgtgtccg cgcaggtcca cagtgactca agagccctag
      781 ccactgccga tcaccgcacc cgtactccag cggtatggcg tcgcccccgc cggagcacca
      841 gccagccgcc gggcagcaga tcggactctg cgggcgtcca accctcgtct cccacctttg
      901 cgttgttcac cgacgcacca ccttcgcgga tcgtccggcg ggccgcgcct ttgctctcag
      961 ccaggccgct gaccaccagc aagtcgacga tcgtgggccg atcagctagt aacaccgctc
     1021 cggtgggtgc ctccgccatg gccgcatcca gcgtgggccc atcgagatca cgcagctccc
     1081 cccgcccgaa caaagcctca ctcgccacca tcgcacgtcg ggcctccccc ggaccgtgca
     1141 ctaacgcggt gacctccgcg gccagtaccc gctgtgcctc ccgagcgtgc ggccgctcga
     1201 cggtcttgcg ttccagctcg gcgatatcgg ccccggacag ctcagtgaac accttctggt
     1261 agctgatcac atcccggtca tcagcgttga tccagaactg gtagaacgcg tacgggctgg
     1321 tcagcttggg atccaaccag atcgtgccgg tctcggtctt gccgaacttg gtaccgtccg
     1381 ctttcgtaat cagcggtgtg gccaaagcgt gcacgcttcg ctgctcgacc ctatgtataa
     1441 ggtccacgcc cgcggtgata ttcccccatt ggtcgctgcc gccggtctgc agcgtgcagc
     1501 cgtaccgccg gtagagctcg aggtagtcca tggcctgcag gagctggtag ctgaactcag
     1561 tgaaactgat ccccgattcg gagttcaatc tcgcgctcac tgcctccttg gcgagcatcc
     1621 ggttcactcg aaagtgccta ccgacatccc gtaggaagtc aatcgccggc agcggctgcg
     1681 tccaatccag gttgttcacc atggtggcgg cgtgcggttc gtggaagtcg agatagggct
     1741 cgatctggcc gcggatccgc tccacccagc ccgccacaac gtctttggtg ttgagcaccc
     1801 gttcagcggt cggcttagga tctccgacca gcccggtggc accgccgacg agagctagcg
     1861 gccggtggcc ggcacgctgg aaccggcgca gggtgagaat ctgtaccagg ttgcccagat
     1921 gcagactcgg cgcggtggga tcgaacccgc agtacagcgt gagcggacct gcatcgcagt
     1981 cgcggcgaag cgcatcgagg tcagtgctgt gcgcgatcag tccgcgccag gtcagctcgt
     2041 caagaatgtg cattcccacc cccgtatcat cccgcatgcg ctgtgccggc tgcccggtgc
     2101 cgccggtagg ttgataccgc ctggctgcca tccacccaga accgccacag ccggtcctgc
     2161 gccgcagcga caccgacccg tggcccggtg cgcaccaggg acgcaggtac cggatcaccg
     2221 agcagtagtc gcaccggcga gctcggatca gcgaggtcca aaccgttgtg ctcccgtccg
     2281 agcccgagca acgtggccag ccgggccggt ccccgagcaa gttcgatgtc ggatcgcgcg
     2341 gtgggccggt accgccgagc gacctcgagg tcggagacaa cctcagcggc gcgcagcaga
     2401 accgcgcccg cttgtccgtt aggcaggcac gagatgttgg cgcagaagtg catcccatag
     2461 atgaaataca cgtacagatg cccgggcggt ccgaacatca ccgcgttgcg ggcagtgcgg
     2521 ccgcggtagg agtgcgcagc gggatcatct gcaccccgat aggcctccag ctcgacgaga
     2581 cggaccacta tttggccgtc aggccggtct gccaccaggt ggcagcccaa cagcagccgg
     2641 gcagccggca ggacgtccac ggcgagacgg ccccgggcga aggtccccac cgtcacaagg
     2701 tgatccagcc ccgatgctca ccgacggctt gccgggcgcg ctccagctgc tcggcgacac
     2761 gatcaggagc ggtgccacca taggcgtctc tcgacgcgat ggacccgtcg acgttgagca
     2821 cccggcgaac gtccaaggtc aactcgggat ggacagcagc aagctccatt tccgagagct
     2881 ccgccagccc gaccccgcgg gattcggcca gccgtacaca ggacccagcc gcctggtggg
     2941 cggtccggaa cgacaccccc tggcgtacca gccactcggc gagatcggtc gccagggtga
     3001 acccggccgg ggccagctcg gcgaggcggt aagtctggaa gctaagagtg cccaccatcc
     3061 cagccatcgc cggtaacaac agctccagtt ggtcgacgga atcgaacagc ggctccttgt
     3121 cctcctgcag gtcccggttg tatgccagcg gttgtgcctt cagggtggcg agcaggccgg
     3181 tgaggtttcc gatcagccgt cctgccttgc cccgggccaa ctcggccaca tcggggttct
     3241 tcttctgcgg catgatcgag ctgcccgtcg agtaggcgtc atccagcgcg acgtaactga
     3301 actcggcgct ggcccagagg atgatctcct ccgcgatccg ggacaggtcg accgccagca
     3361 tcgccagcac gaacgctgcc tcggcggcaa agtcgcgcga cgccgtgccg tcgatcgagt
     3421 tctccacggg tgcgttgaag ccgagttcag cggccaccgc cgccgggtcg aggccgagcg
     3481 acgagccggc cagggctccc gacccgtagg gcgagaccgc agctcgggca tcccagtccc
     3541 gtaatcgtcc gacgtcgcgc agcagagcct gcacgtgcgc tcccaagtgg tgagcgagca
     3601 acactggttg ggcgtgctgc aaatgcgttc ggcccggcat aggcgcgtcg gggtgtgcct
     3661 gcgcctggtc tagcagcgcg tcgatcacgt ccagggtgcc ggcagcgacc cggcgagcgc
     3721 cgtcgcgcag ccacatccgc agtagcgtcg cgacctggtc gttgcgggat cggccggcac
     3781 gtagccggcc gccgagctcc ggcccggcgc gctcgatcag gccacgttcc agtgcggtgt
     3841 gcacgtcctc gtcctcgggt gccgggacga acgcgccaga ctcgacgtcg gtatcgaggc
     3901 ggtccagagc gtcgcgcatt gcggccagct caccgtcgtt gagcagccct gcgtcgtgca
     3961 gtacccgagc gtgcgcacgg gagccccgga tgtcgtagcg ggccaggcgc caatcgaagt
     4021 gggtcgaggc gctcagcgcc gcaagcgcat cagccggttt tccactgaac cgagcacccc
     4081 agagtccggt catgacgaga ggtcccggtg tgtggcctgc aggtctcgct gtgcggcaag
     4141 tttcgatggg agtccccaca gctgtacgaa acccttggcc agggactggt cgaaggtgtc
     4201 cccggcgtcg taggtagcga ggttgaagtc atagagcgac tgcgcactgc gccgcccggt
     4261 caccgtggcc cgaccgccgg ccagctcgat gcggatctcg ccggtcacgt ggcgctggga
     4321 gtcggcgacg aaggcgtcca gcgcccgttt gagcggggaa aaccacaacc cgtcgtagac
     4381 aagctcgctc cagcgctgtt ctgcgctgcg tttatacctg gccaaatcgc gctccaccgt
     4441 cacgttttcc agttcctgat gcgcggtgat cagggcgatc gccgcgggtg cctcgtagac
     4501 ctcacggctc ttgatgccga tcagccgatc ctcgaccagg tctaaccggc cgacgccatg
     4561 tgccccggcc cgtgcgttga gctgcttaat cgcctcgagt actgtcaccg gcgcgccgtc
     4621 gatagcgacc ggcacgccgg actcgaaact gagcaccaac tcctccggcg ccttccactc
     4681 ggttggatcg caagtgtagg agtacacgtc cttggtcgga gcgttccaca ggtcttccag
     4741 gaacccggtc tccaccgctc gaccccacag gttctgatcg acggagaacg gcgagcgctt
     4801 ggtgacgtcg atcggcaagt tgcgctcctc ggcgtaggcg atcgccttct cccgggtcca
     4861 cgcgtagtcc cggaccgggg cgatgacccg taggtccggg gcgagggtac cgatcccgac
     4921 ttcgaagcgg acctggtcat tgcccttgcc agtgcacccg tgcgcgacgg tggaggcgcc
     4981 gtggtacttc gcggctgccg ccaggtgctt gacgatcagc ggtcgtgaca gcgctgatac
     5041 cagcggatag cggttcatgt acagcgcgtt ggcctgcagg gccggcaggc agtactgctc
     5101 agcgaactcg tcgcgggcat cagtgacgac ggcctccact gcgccgcagg ccagcgcccg
     5161 ctggcggatc gtctccaggt cctcgccgcc ctggccgaca tcgacggcga cagcgacgac
     5221 ctcagctccg gtttcctctc cgatccatcc gatcgccacc gacgtgtcca gcccgccgga
     5281 gtaagccagc accacacgtt cggtcatctt gctctccctt cggtagagct cgtgagtggc
     5341 aaacagcgtt atagccctgg ttcgcactca cgggtgcgcc agcgcc
//
LOCUS       DASVXZ010000860         1503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_603685, whole genome shotgun sequence.
ACCESSION   DASVXZ010000860 DASVXZ010000000
VERSION     DASVXZ010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603685"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1094)
                     /locus_tag="VF788_18190"
     CDS             complement(<1..1094)
                     /locus_tag="VF788_18190"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936066.1"
                     /translation="MARTFFCFVGEGGWGSMQVLYSRCAAIDVHKDQITVAVRTPGDG
                     PGRRHTEVRKFRAFYGMLTEMARWLVSLQVIRVAMEATGIYTMPVYHALIEHGRFEQV
                     LVCNAAHVKNVPGRKTDAIDAVWLAELLECGLLRGSFVPEPKIKAVRDVVRYRKKLVG
                     SRSSELQRLGAVLQDAGIKLDSVASSIGTVSGRAMIDALIDGERRPAVLADLALGRMR
                     SKIPDLTLALEGRFDDHHALMCQLHLQHIDHLDEMIARLDAQVEQMMVPFARQRDLLV
                     TIPGIGPTTAAAILAEIGANPDEFFSDGAHLASWAGLCPGNHESAGKRKHGTPRKGNQ
                     HLKPLLVEAAWSAVRTNGRLRARYHRLVLR"
     gene            complement(1298..>1503)
                     /locus_tag="VF788_18195"
     CDS             complement(1298..>1503)
                     /locus_tag="VF788_18195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936067.1"
                     /translation="TVREKDYSQLHRSSDTPTSSGHNIPSAITSPDHQQGHDLPPGLP
                     VQESRVLTCQRLPASELARRPTR"
BASE COUNT          287 a          470 c          470 g          276 t
ORIGIN      
        1 aagcgcagca cgagccggtg atagcgggcg cgtagccgcc cgttggtccg cacagctgac
       61 cacgcggcct ccaccagaag gggtttgaga tgctggttgc ccttgcgtgg ggtgccgtgc
      121 ttgcgcttgc ccgcggattc gtggttgccc ggacacagcc cggcccacga ggctaggtgc
      181 gcgccgtcgg agaagaattc atccgggttg gccccgatct cggccaggat ggccgccgcg
      241 gtggttggtc cgatgcccgg gatggtcacc agcaggtcgc gttggcgggc gaaagggacc
      301 atcatctgct ccacctgcgc gtcgagccgt gcgatcatct catcgagatg gtcgatgtgt
      361 tgcaggtgca gctgacacat cagcgcgtga tggtcgtcga agcggccctc caatgccagg
      421 gtgaggtcgg ggatcttgga gcgcatccgg cccagggcca gatcggccag gaccgcgggt
      481 cggcgttccc cgtcgatgag agcgtcgatc atcgctcgac ccgagacggt gccgatcgag
      541 gaggccaccg agtccaattt aattcccgcg tcttggagca cagcacccaa ccgctgtagc
      601 tccgaactgc gcgacccgac cagcttcttg cgatagcgga cgacatcacg cacagccttg
      661 attttcggct cggggacgaa actgccgcgc agcaggccgc actccagtaa ttccgctaac
      721 cacacagcat cgatggcgtc ggttttccgg ccggggacgt ttttcacgtg cgctgcgttg
      781 cacaccagca cctgttcgaa gcgtccgtgc tcgatcagcg cgtgatacac cggcatggtg
      841 tagatcccgg tggcttccat cgctaccctt atgacctgca gggataccag ccaacgtgcc
      901 atctcggtga gcattccgta aaacgcccgg aacttacgca cctcggtgtg gcgccgaccc
      961 ggcccatcgc cgggtgtccg caccgcgacc gttatctgat ctttgtggac atcaatcgcg
     1021 gcgcaccgcg agtacaacac ctgcatcgat ccccacccac cttcacccac gaagcaaaag
     1081 aaggtgcgcg ccacccggga acctcgaaaa atgaagacac taacgtacgc gctcgtagcg
     1141 acactcggga aatacccaaa ctacacggct cctgcgtcaa tctaatgaac ggtctcgacc
     1201 gaaccaagga gaaacgacgt cgacaggcga cacgcacacc ccagtctcat ccaccgccag
     1261 cggcccgcgc cagagggcaa tgttgatcta atgagagcta gcgggttggc cgtcgggcaa
     1321 gctcgctagc tggtagccgc tggcaggtga gcactcggct ttcctggact gggagtcctg
     1381 gcggtagatc gtgcccctgc tggtggtcgg gagaggtgat cgctgatggg atgttgtgcc
     1441 cgctgctggt gggagtgtcc gatgaacggt gtaactggga gtaatctttt tcacggactg
     1501 tag
//
LOCUS       DASVXZ010000861         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_783167, whole genome shotgun sequence.
ACCESSION   DASVXZ010000861 DASVXZ010000000
VERSION     DASVXZ010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_783167"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1530
                     /locus_tag="VF788_18200"
     CDS             <1..>1530
                     /locus_tag="VF788_18200"
                     /inference="COORDINATES: protein motif:HMM:NF024972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-dependent metalloprotease family protein"
                     /protein_id="HEX8936068.1"
                     /translation="LPADPLWQNIDEIPAMPANARNGIRPTKFKAFALNATALRSTLS
                     GAPMQFSAQPPQAAGLEISLPQPDGSLARFQVEEVALMEPGLAAKFPGFKTYRGRGLD
                     DPMASLHLDVNPWTFHAQVLSPSGTYYVDPYWQHDGSVYMSYAKSDLSAGGRQFKCLV
                     DDASAKQDGQLAATAVTAPAAPAATTNTQSGRNLRTYRLACATSIMYSQYHGGADPDV
                     AKVLAALVTMNNRVSGVYETELGIRMVLVANQEAIIATSTNPTPYTDTPGDIGTNPAY
                     IDQKIGPDNYDIGHVVTTGSGGIAGLGVVCRGLNVQSGGSAKARGTTGINPPEGDGFW
                     IDFVAHEMGHQFGGNHTFDGTGTNCGTNQNESTAYEPGSGTTIQAYAGICGDQNIQPH
                     SDPYFHFISLVEMFGFASSGAAPRPPEINQARTAAIQAPSGPDANPGSGTLNPIPGSS
                     LTWTGTAAGGAAPDEAACIEGVNCDTFVLTIGGTPADWQEKTARITFTWPNAVDDYDI
                     YV"
BASE COUNT          318 a          483 c          447 g          282 t
ORIGIN      
        1 gcttccggcc gatccccttt ggcaaaacat cgatgaaatt ccggctatgc cggcaaacgc
       61 gcgtaacggc attcgaccca cgaaattcaa ggccttcgcg ctgaatgcga ccgcgctccg
      121 ctccacgctg tccggcgcgc caatgcagtt cagcgcgcaa ccgcctcagg cggccgggct
      181 tgaaatatct ctgccgcagc cggacggcag cctcgcgcgc ttccaagtcg aggaggtggc
      241 cctgatggag cccggcttgg cggcgaaatt tcccgggttc aagacttatc gcgggcgcgg
      301 tctcgacgac ccgatggctt cgcttcattt ggatgtgaac ccctggactt ttcacgcgca
      361 ggtgctctcg ccctccggca cctactacgt cgatccctat tggcagcacg acggcagcgt
      421 ttacatgagc tacgcaaaaa gcgatctgtc ggccggtgga aggcagttca agtgtctggt
      481 ggatgacgcg agcgcaaaac aggatggaca gctcgccgcc accgcggtga ccgcgccggc
      541 cgcgccagcc gcgacgacca acacacagtc gggcaggaat ctgcggacct accgattggc
      601 ttgcgctact tccatcatgt acagccagta ccatggtgga gcggatcccg acgtcgcgaa
      661 ggttctcgcg gcgctggtga cgatgaacaa tcgcgtttcc ggtgtctacg aaacagagtt
      721 aggaatccga atggtgctgg tggccaacca ggaggcgatc atagccacga gcacgaatcc
      781 cactccttac accgacacgc ccggagatat cggcaccaat ccagcctata tcgaccaaaa
      841 gatcggcccg gataattatg acatcggcca cgtcgtcacc actggcagcg gggggattgc
      901 cggtctgggc gtcgtctgcc gcgggctcaa tgttcaatcc ggcggcagcg cgaaggcccg
      961 ggggacgacc gggatcaatc ccccggaggg cgacggcttc tggatcgatt tcgttgccca
     1021 cgagatgggg caccagttcg gtggcaatca cactttcgac ggcactggga ccaattgcgg
     1081 gaccaatcag aacgaatcca ccgcctatga acccggcagc ggcacgacca tccaggctta
     1141 tgccggtatt tgtggcgacc agaatattca gccgcacagc gacccctatt ttcactttat
     1201 cagtctggta gaaatgttcg ggttcgcttc ctccggcgct gccccgaggc cgcccgaaat
     1261 taaccaggcc cgaactgcag ccattcaggc accgagcgga cctgacgcga atccgggttc
     1321 cggaacgtta aaccccattc cgggctcgag ccttacctgg accggcaccg cggcaggtgg
     1381 cgccgctcca gacgaagccg cctgtattga aggtgtgaac tgcgatactt tcgtcctcac
     1441 tattggggga accccggctg attggcagga gaagacagca cgcatcacct tcacctggcc
     1501 gaatgccgtg gatgactacg atatttatgt
//
LOCUS       DASVXZ010000862         6134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_604551, whole genome shotgun sequence.
ACCESSION   DASVXZ010000862 DASVXZ010000000
VERSION     DASVXZ010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6134
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_604551"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VF788_18205"
     CDS             complement(<1..388)
                     /locus_tag="VF788_18205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936069.1"
                     /translation="MSSIAAALCLAVALAWHTGLTLFDNRSIRRGYSGGRVYRLDQGW
                     VCSSRLATEQRLALAGLVVAVALVPARLAAGKWAITATLLCCCGALAFVLANRQLRGG
                     RYTSVCLALLSAALLLEQAFTLVSGAA"
     gene            complement(825..1577)
                     /locus_tag="VF788_18210"
     CDS             complement(825..1577)
                     /locus_tag="VF788_18210"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8936070.1"
                     /translation="MTVDAEREAAQGSYAERFAEQYDDWFGFTAPTNDTVELLHGFAS
                     SEPVLELGIGTGRVALPLSARGVQVQGVEASREMAARLRSQPGGDRIVVTIGDFSEIP
                     VDGSFSLVYIVAGTFFELRTQEAQLDCFINAARRLASGGTFILDALLPEALNSPGVGN
                     GRVIPTRNGDLVVRYRRVSRATQHYDSHYMITTDTCVRHIHVPFRYAGAGELDLMARI
                     AGLRLRQRYGSWAGTPLDDHCPYHVSVYELAD"
     gene            complement(1607..2863)
                     /locus_tag="VF788_18215"
     CDS             complement(1607..2863)
                     /locus_tag="VF788_18215"
                     /inference="COORDINATES: protein motif:HMM:NF014661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HEX8936071.1"
                     /translation="MNGGAVGTTGINVDAWRVQLFSPFSAFPGLVFGRVAVQSPAFPA
                     SDAAGAQRVLIGSAAGSDGENVAVRAKGELLERVHNVLAARQAEAGSVADAVIASYEM
                     LQRAGRPALDPLAFRDLAHCRDVRSAELLWVTGQSLVSDRDVLVPACAAFLAHRPPSG
                     CVAPLRPGSTGTAAHHNTAEAVRHAVLEVLERDLLWHAWYGNGARAVMAGRPPLSSQL
                     SEGLLALDLCATFMLLPGPAGTACGLACLQSTGRTAQTFGARAASALDGDTLVTTLEA
                     AVHEALMVRWSMDSSAARIVWSRMCIEDRYSPYGPLEHALHTFHRQDSLGHLLASSTQ
                     CTLPDPALGQVTVPTSVTGISISRLLADHTGEDVVAVNTTVPAVGPPGTVVVRVVAPG
                     ARRLPADEQAQPSPPQACTRLPHPLG"
     gene            complement(2860..3849)
                     /locus_tag="VF788_18220"
     CDS             complement(2860..3849)
                     /locus_tag="VF788_18220"
                     /inference="COORDINATES: protein motif:HMM:TIGR04267.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEXXH motif-containing putative peptide
                     modification protein"
                     /protein_id="HEX8936072.1"
                     /translation="MRVAPDRDSAAHDEEKLARLVRGYLVRVLPAASVPAEREMAYPG
                     FHAVAHRVQRLLRRGELGSQARMKLAAEVRAVAGRASRCWARGVGQIWHPWWAVDLAP
                     PEEHLAESLNRAVGQIPKHPDRVVDLAVTDWDSEHHQVFREACETLAQVWPEMLAELS
                     TVVRQIALLDGWGIDGYTDFTVHGTIFVNKARLGMGPDELPVHLCLAEALVHEGTHNR
                     CDAAAASDPFLASAGAAAGTGPLLQTPLRADPRPLSGLFQQVVVLARSVLFYDRLPTT
                     GPVRARREFLLAQGLRGVATLRSQVTGLTGHGCVVVDEANMLLVRRAEAARIQ"
     gene            4692..5918
                     /locus_tag="VF788_18225"
     CDS             4692..5918
                     /locus_tag="VF788_18225"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936073.1"
                     /translation="MVRGLGRDITITAVIMGGSALGDVAAQVALMLRVHEDAGSAWAV
                     TALLLAGNLPPVFLARPAGAMVDRYDSRVLMVGCALAQALVCLPLTVCGSIGVMLTLV
                     AALAALATVAGLARNALVPDMVAAPRLLRANAALRGATAIGRMAGWPIGGFLTGMLGS
                     GSVLLLDAVSFVVLAAGAMVIHTRRTPGAASGPDPSGGLRRRTGTAVDPILTLVAGSV
                     GLVLLFVSTTNVAQVFFVKDVLGASDTGYGVVSACWMVGAVLAVPVLAQGRCTRGALA
                     SIVVASEAATGLAVFGAGLSSSPIIAGAWYVLGGLGSSSMLIAGAALRQLVAPDEERG
                     RVLAVYNTLANAAIVVALGISVALMSWLGARGVFLAAGVLVVMAAALTGGVLRVLPQL
                     AMKPTRRSDSLVIKRA"
BASE COUNT         1166 a         1880 c         1998 g         1090 t
ORIGIN      
        1 tcgcagcgcc cgacacgagg gtgaaagctt gttcgagcag gagagcggcg gagagcagtg
       61 ccagacacac agatgtgtag cggcctcctc ggagttggcg attggccagg acaaaggcca
      121 aagctccaca gcagcacagc agagtggcag taatcgccca cttcccagcg gcgagtcggg
      181 ccggtacgag tgccacagcc accacaagtc cggctagggc aagccgctgc tccgtggcga
      241 gtcgactgga gcagacccag ccctggtcca gtcggtagac ccgccccccg ctgtaacccc
      301 ggcggattga gcggttgtcg aacagggtga gcccggtatg ccacgccagc gccaccgcta
      361 ggcacagagc agcggcgatg gacgacatga tggtggagcc gcgggttacc gcgacggttg
      421 ccgagacatg agccgtcgca gttcggcgtg caaggcggtt agctcagtgc ctggtgcgag
      481 cggggtggta gccaggcggc ggcggtcggg gtcataacgt atgcgacagc tcttggcgga
      541 gccgatgatc aggccttcca gaggaatcat ggggtgagtc tcagagagta gccgcttgag
      601 cgtgggcagg gtgaggaagt gactcgccgg gtcaagctgt agctccccgt gggagggcac
      661 ccgtgtgata tcgccagtgt cggtccatag aaagcccttg gatgactggg agtacatccc
      721 ccacgagaac gcacgatgcg gatgggtcca tgctccccat gcgacgaaag gaatgagcaa
      781 cagggccgca ccaatttcgc cgatgaacac gtcaacctgc tgggtcagtc cgcgagttcg
      841 tacacggata cgtggtaggg acaatggtca tcgagcggcg ttcctgccca gcttccgtat
      901 cgttgccgta accgtagccc ggcgatgcgg gccatcaggt cgagttcgcc ggccccggcg
      961 tagcggaacg gtacatggat gtggcgcacg caggtatcgg tggtgatcat gtaatgggag
     1021 tcgtaatgct gggtcgcgcg ggaaacgcga cggtagcgca caacgagatc gccgttcctg
     1081 gtgggtatta cgcggccgtt tcccactccc ggtgagttca gcgcctccgg tagcaaggca
     1141 tcgaggatga atgtcccacc ggaggccagc ctgcgcgccg cattgatgaa gcaatccaac
     1201 tgcgcctcct gggtgcggag ttcgaagaat gtgccggcta ctatgtagac gagcgagaag
     1261 ctcccgtcga ccggtatctc gctgaagtcg ccgatcgtta ccacgattcg atctccgccg
     1321 ggctgtgatc gcaatcgggc cgccatctca cgagatgcct ccacaccctg cacctgcacg
     1381 ccgcgcgcgc tcagcggcag ggctacgcgg cccgtgccga tccccaactc cagtaccggt
     1441 tccgagctgg cgaacccgtg aagcagttcc acagtgtcgt tggtaggtgc ggtaaacccg
     1501 aaccagtcgt cgtactgctc ggcgaagcgc tcggcataag agccctgtgc agcctcgcgt
     1561 tcggcgtcga ccgtcatgtg tgttccttcc gcatcacgcc aggatctcat ccaagagggt
     1621 ggggcagtcg ggtgcaggcc tgggggggcg agggttgggc ctgctcgtcg gccggaagcc
     1681 ggcgggcccc gggagcgacg acccgtacca ccaccgtgcc gggagggccg actgccggga
     1741 cagtggtgtt caccgccact acatcctcac cggtgtgatc ggcgaggagc ctactgatgg
     1801 atatcccggt gacgctggtg gggaccgtca cttgcccgag cgccggatcg ggtaatgtgc
     1861 actgtgtgct gctggcgagc aggtggccca ggctgtcctg ccggtggaag gtatgcaaag
     1921 catgttctag aggaccatat ggcgaatacc ggtcctctat acacatccgc gaccacacta
     1981 tgcgtgcagc agacgagtcc atactccatc ggaccatcaa agcttcgtga acagcagctt
     2041 cgagtgtcgt aacgagagta tctccgtcga gagctgatgc agcgcgagcc ccgaaggttt
     2101 gtgcggttcg gccagtactc tgcaggcatg ccaggccaca cgctgtgccg gccggacccg
     2161 gcagcagcat gaacgtggca cacaagtcaa gagcgaggag accctcggac aactgcgagg
     2221 acagcggcgg acggccggcc atgaccgccc gtgcgccgtt gccgtaccac gcatgccaca
     2281 acaggtcacg ttccaacact tccaacacgg cgtgccgcac cgcctcagcg gtgttgtgat
     2341 gagcggcggt tccggtcgaa ccgggacgca acggagcgac acagccagat ggcggccggt
     2401 gcgccaagaa agccgcgcac gccggcacca ggacatccct gtccgagaca agtgactgcc
     2461 cggtaaccca caatagctcg gcgctgcgca catcgcggca gtgcgccaaa tcccgaaagg
     2521 cgagcgggtc aagcgcgggc cggcccgcgc gctggagcat ctcatagctg gcgattacgg
     2581 catccgcgac tgagccggcc tcggcttgac gggcggcaag gacattgtgg acacgttcca
     2641 atagctcacc cttagcgcgc actgcgacat tctcaccatc acttccggca gcggagccga
     2701 tcagaacacg ctgagcaccc gcagcgtcgc tggccggaaa ggccggagac tgcacagcaa
     2761 cccgcccgaa aacgagtccg ggaaaggcgc tgaacggtga gaagagttgc acacgccacg
     2821 cgtccacatt gatcccggtg gtgcctacag ctccgccgtt cattgaatgc gcgccgcctc
     2881 tgctcgccgg acgagcagca tatttgcctc atcgacaacc acacaaccgt gtcccgtcag
     2941 gcctgtgacc tgcgaacgaa gtgtagcgac gccccgcaac ccttgagcga gcaagaactc
     3001 gcggcgcgcg cgaactgggc cggtggtagg caacctatcg tagaacagca cactgcgagc
     3061 gagaacaacc acctgctgaa acaggccaga cagcggccgc ggatcagcgc gcagcggagt
     3121 ctgtaacaac gggccggtgc ctgccgcagc cccggcggaa gcgagaaagg gatcggaggc
     3181 cgccgccgcg tcgcagcggt tgtgagtgcc ttcgtgaact aatgcctcgg ccagacacag
     3241 gtgaactggc aactcgtccg gccccattcc gaggcgggct ttgttgacaa agatcgtgcc
     3301 gtgcacggtg aagtcggtat agccatcgat gccccaccca tcgaggagcg cgatttgccg
     3361 caccacggtg gacaactccg ccaacatctc cggccacacc tgcgcaagtg tctcgcaagc
     3421 ctcccggaaa acctgatgat gctcactgtc ccaatccgtg accgcgagat caacaacccg
     3481 atcgggatgt ttggggatct ggcctaccgc gcgattgagg ctttcagcga ggtgctcctc
     3541 aggaggagcg agatccactg cccaccacgg atgccagatc tgtccaacgc cgcgcgccca
     3601 gcaacggctt gcgcgccctg cgaccgcgcg cacctcagct gccagcttca tcctagcctg
     3661 cgacccaagc tccccccgcc gcagaagccg ctggacgcgg tgggcgacag cgtggaaacc
     3721 aggataagcc atctcccgct cggctggaac ggacgccgcc ggaagaaccc ggacgagata
     3781 cccgcgcacg agacgcgcca gtttttcctc gtcgtgcgcg gctgagtcgc ggtcaggtgc
     3841 cacgcgcatt cctgttttct cccttagccc gcccactcga tcgaagcgcg cggggccgaa
     3901 cgatcgcccg accccgcctc atgcgacggc ctacagcacc accgcttcaa tcactcccgt
     3961 gatatcgact tagtcaggga gatcaatcat caacgcgaac tcaggaagag tctcctcgtc
     4021 caccgactcc acaagctcga cctcggtcac accaatctct tccatcatgc ctccaaatac
     4081 ccgactggca ttgcatccac acacgagaag tctggtcgtg tgcataagca tcctgacatg
     4141 aactgcgcgc ggctcgccag cgcccccacc cacccaggga tttcttcatg gcacatgcca
     4201 cccccctcgc acgcacagtt agcgcttaac acgtgatcac cccccacttg gtctagagac
     4261 accgagggtg gtagtcccga gctaccaagt taggtaactt cggcgcaaca gaggtagtac
     4321 ggcaacggct atcgctcagc agctgcagtt agttccccac gccgctaatg atggtaaacg
     4381 ctgcggtggc tgacagaata gcaggttacg acgcgggctt gctcgacgca agtcacgata
     4441 agccgatgat gcgggttccg aaccggaccg gagacgaaca tcgcgccaca gtttgatctc
     4501 ggccttgacc tcgagggtcg tctgcggtat gggtgccgag gggcatcact gacgctgctg
     4561 gacgccaccg tgccttacct agagggggtg ccacatacgt aatccgatcg agatgtactc
     4621 aatgttgccg aggtttcctc atagccgcat ttccggtagg taagtttacc ggggatgggg
     4681 ggatctgttg aatggtgcgc ggtctgggtc gagatatcac gattactgcc gtgattatgg
     4741 gaggttcggc gctcggggat gtggccgcgc aggtggcctt gatgttacgg gtgcacgaag
     4801 atgccggctc ggcgtgggcg gtgactgcgc tattgctggc cggcaaccta ccgccagtct
     4861 tcttggcgcg cccggccggg gcgatggttg atcgatatga cagccgggtg ttgatggtgg
     4921 gttgcgcgct ggctcaggca ttggtgtgcc tacccctaac ggtgtgcggc tcgattggag
     4981 tgatgctgac gctggtggcc gcacttgcag cgctggctac ggtcgccggg ctagcccgta
     5041 acgcgctggt gcctgacatg gtcgcagcgc cgcgactgct gcgtgccaat gctgcgctgc
     5101 ggggagcgac cgcgatcggt cggatggcgg ggtggccgat cggcggattt ctgaccggca
     5161 tgctaggtag cggctcagtg cttctgctgg acgcggtgag cttcgtggtg ctagccgctg
     5221 gagccatggt gatccatacc cggcggacac ctggcgcagc gtccggtcca gaccctagtg
     5281 gcgggctccg gagacggact ggtacagcgg tggatccaat tctgacgctg gtagcgggca
     5341 gtgttggtct ggtcttgctc ttcgtgtcga ctaccaatgt cgctcaggtg ttttttgtga
     5401 aggacgtgct gggcgccagc gacaccggct atggcgtcgt cagcgcctgc tggatggtag
     5461 gggcggtgct tgccgtcccg gtgctggcgc aggggcgctg cactcgtggt gcactcgcat
     5521 caatagtcgt tgccagcgaa gcggcgactg gtttagccgt gtttggtgcg gggttgtcct
     5581 catcaccgat tattgccggt gcctggtatg tgctgggcgg gttgggcagc agctcgatgc
     5641 tgatcgccgg agcggcgctg aggcagttgg tcgcgccgga cgaagagcgg gggcgtgtcc
     5701 tggccgtcta taacaccctg gcgaatgcgg cgatcgtggt cgcgctgggg atcagcgtgg
     5761 cgttgatgag ctggttgggc gcccgcggtg tctttctagc ggccggagtc ctggtggtca
     5821 tggccgcagc actcacggga ggcgttttac gggtcctccc acagttagct atgaagccca
     5881 cgaggagatc agatagtttg gtcatcaagc gggcctgagg gtcattgtcg acgtggcccc
     5941 gccgtgggtg acctaactgg ggttccaaga gccagggcac taaggacttg accagtggtt
     6001 gcccgccttg gacgagagcc gatcttgaca cgcgggatcg atcggccatc ctgatttcat
     6061 gccacagata ctgaccgacc tgatagctcg gggattctta cctatcgggt tgggcgcagg
     6121 ccagaacagc gtgt
//
LOCUS       DASVXZ010000863         2641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_963743, whole genome shotgun sequence.
ACCESSION   DASVXZ010000863 DASVXZ010000000
VERSION     DASVXZ010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_963743"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1440)
                     /locus_tag="VF788_18230"
     CDS             complement(<1..1440)
                     /locus_tag="VF788_18230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005453211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEX8936074.1"
                     /translation="MAVSRPTKTSAAHNSVARLPGAPARPSFAKIREPLQVPDLLDLQ
                     LQSFQWLIGADEWYQRRIEAGDEQPIGGLAEVLEEISPIEDFSGSMSLSFSDPRFDEV
                     KASVEECRDKDMTYAAPLFVTAEFTNNNTGEIKSQTVFMGDFPMMTNKGTFIINGTER
                     VVVSQLVRSPGVYFDHAVDKTTDKDVYSVRIIPSRGAWLEFDVDKRDTVGVRIDRKRR
                     QPVTVLLKALGWTTERIAARFTHSETLLATLEKDHTGGPDEALLDIYRKLRPGEPPTK
                     ESAQALLENLFFKVKRYDLAKVGRYKANKKLGLNLPYRSGVLTEDDIVTTIDYLVRLH
                     AGEATMPAAAGGPDDVVPVETDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERM
                     TTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHKRRLSALGPGG
                     LSRERAGFEVRDVHHSHYGRMCPIETPEGP"
     gene            complement(1847..1981)
                     /locus_tag="VF788_18235"
     CDS             complement(1847..1981)
                     /locus_tag="VF788_18235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936075.1"
                     /translation="MSRSDAATPIQAGRRLANLALIGRADRAITADRAHPTTDRTMNP
                     "
     gene            complement(1968..>2641)
                     /locus_tag="VF788_18240"
     CDS             complement(1968..>2641)
                     /locus_tag="VF788_18240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936076.1"
                     /translation="GSPVRKPIDGSTVREPNRYPTDRPGAVTLDDPAHPINSADSTGS
                     VEEATQPGAPRRRLTMALVGSAAVLVIALGFAAWFRGEANQLLDSAPKSNSALLDAGA
                     TAQVSGQVRDAVERVFSYDFARLDDNERAANDVVTGQFARDYRQQFARVRELAPGQQA
                     VVVATVPALAVKVLDGDRAIVMVFIDQQANRGGQAQPLIAAGRLSVTAQRIAGNWKIA
                     DVEPF"
BASE COUNT          434 a          835 c          890 g          482 t
ORIGIN      
        1 cgggccctcc ggggtctcga tcgggcacat ccggccgtag tgcgaatggt gaacgtcgcg
       61 gacctcgaag ccagcccgct cccgggacag accaccagga cccagggcgg acagccgccg
      121 cttgtgggtc aacccggcca gcggattggt ctggtccatg aactgggaca gctgggaggt
      181 gccgaagaac tccttgatcg ccgctaccac cggtcggatg ttgatcaggg tctgcggcgt
      241 gatcgcctcg acgtcctggg tggtcatccg ctcgcggacg acccgctcca tgcgagacag
      301 gccgacccgg atctggttct ggatcagctc ccccacggtg cgcaaccgcc ggttgccgaa
      361 gtggtcaatg tcgtcggtct ccaccggcac cacgtcatcg gggccgccgg cagcggccgg
      421 catcgtcgcc tcgcccgcgt gcagccggac gaggtagtcg atggtggtga cgatgtcgtc
      481 ctcggtgagc accccgctgc ggtagggcag gttcaggccc agtttcttgt tggccttgta
      541 gcggccgacc ttagccaggt cgtagcgctt gaccttgaag aagaggttct ccagcagcgc
      601 ctgtgcgctc tccttggtgg gcggctcacc cgggcgcagc ttgcggtaga tgtccagcaa
      661 cgcctcatcc gggccgccgg tgtggtcctt ctccagggtg gccagcagcg tctcggagtg
      721 cgtgaaacgc gccgcaatcc gctcggtggt ccagcccaga gccttgagca gcaccgttac
      781 cggctggcgg cgcttacggt cgatccgcac gccgaccgtg tcacgcttgt cgacgtcgaa
      841 ctccagccag gcgccccggc tggggatgat ccggacgctg tacacgtcct tgtcggtggt
      901 cttgtccact gcgtggtcga agtacacgcc aggggagcgg accagctgcg acaccaccac
      961 tcgctcggtc ccgttgatga tgaaagtgcc cttgttggtc atcatcggga agtcacccat
     1021 gaacaccgtc tgagatttga tctcgccggt gttgttgttg gtgaactcgg cggtgacgaa
     1081 cagcggcgcc gcgtaggtca tgtccttgtc ccgacactcc tcgacggagg ccttgacctc
     1141 gtcgaagcgc gggtcggaga aggacaggga catcgagccg gagaagtcct cgatcggaga
     1201 gatctcctcg agcacctcgg cgaggccacc gatgggttgc tcgtcaccgg cctcgatgcg
     1261 acgctggtac cactcgtcgg caccgatcaa ccattggaac gattggagct gcaggtccag
     1321 cagatcgggc acctggagcg gctcgcggat cttcgcgaaa gatggtcgcg ccggggcccc
     1381 ggggaggcga gctacagagt tatgcgcagc agaggtcttg gtcgggcggg agactgccaa
     1441 gattgcgtcc ttccgaacac tagcgctgcc gagcgcagga tcacgggtcc atagcggggt
     1501 cacccgagga ccacgctccc ggcgcggtgt tggtgcagtt gctgatgtag tcgtgtgctg
     1561 atgtagttgt ggagtgtcgt gagtgtttcg tcgatgcagt tgtcgtttgc ggctgtagtg
     1621 tgggtacagc ctcgggtaac cttgccgcag cccaatgggc ccggtacgca ggtggttcca
     1681 gtttcgcagc tgtcaggatt cacagctgcg aaagaccgct ctagcgcacg gaaacatggt
     1741 gagggcagcg caaagagaca gtctaaccgc taggacggcg actgtccagc gccggtctag
     1801 acccggcgcg agcgtggtcc tagagtgacc tgccagacgg tcctcgtcaa gggttcatcg
     1861 tccgatcagt ggtcggatgt gcacgatcag cggtgattgc ccgatcggcc cggccgatca
     1921 gcgcgagatt cgccagccgg cgaccggcct ggatcggtgt cgcggcgtca gaacggctca
     1981 acgtcggcga tcttccagtt accggcgatc cgctgcgcgg tgacgctgag cctacccgcg
     2041 gcgatgagag gctgggcttg cccgccgcgg ttggcctgct ggtcgatgaa caccatcacg
     2101 atcgcccgat caccatcgag cactttgacg gccagcgcgg gcacagttgc caccaccact
     2161 gcctgctgcc ccggcgccag ctcacgcacg cgggcgaact gctgacggta gtcgcgggcg
     2221 aactgtccgg tgacgacgtc gttcgcggcc cgttcgttgt cgtccaggcg agcgaagtcg
     2281 taggagaaga cgcgttccac cgcgtcccgg acctgcccgg agacctgcgc ggtggcgcct
     2341 gcatcgagca atgcgctgtt gctcttcggc gcagaatcga gcaactgatt cgcctcgccg
     2401 cgaaaccatg ccgcgaaacc cagcgcgatt accagcacag cggccgatcc caccagcgcc
     2461 atggtcaggc ggcgtcgcgg ggccccgggt tgcgtcgcct cctcgacgct gccggtgctg
     2521 tcggcgctgt ttatcggatg cgccggatcg tcgagagtga ccgcaccagg ccggtcggtg
     2581 ggataccgat tgggctcccg aacagttgaa ccgtcgatcg gcttccgaac gggtgaaccg
     2641 t
//
LOCUS       DASVXZ010000864         4794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1681185, whole genome shotgun sequence.
ACCESSION   DASVXZ010000864 DASVXZ010000000
VERSION     DASVXZ010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1681185"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..961)
                     /locus_tag="VF788_18245"
     CDS             complement(122..961)
                     /locus_tag="VF788_18245"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEX8936077.1"
                     /translation="MAVVLVLMGLPSTASATSVSVWKRYVALGDSYASGPGIPVQRID
                     PMDCQRSTGNYPARLAGILDINDFTDVSCGGARTEDMTAAQPLPRGPTPPQFDALRAD
                     TDLVTVTLGGNDINIGDLWVSCARLGPADPLGNPCARQATIGGVDLYEQRIATAAPKI
                     AHVLEGIRQRSPRAKVLLVGYLRVLPSALGCYPLFPIARGDVPYVDGVEQRLNAMLAT
                     QASSHGAVFVDTYTRSPGHDACQQPTAKWVEGTSPTSPASPVHPNALGMQHMANFTRD
                     ELT"
     gene            complement(1636..1923)
                     /locus_tag="VF788_18250"
     CDS             complement(1636..1923)
                     /locus_tag="VF788_18250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936078.1"
                     /translation="MGIVLITLSMSLGGFITGPNPSDKQPLGTADNVLAPGGERWMID
                     EVFAAAGAVVAGRTTYDHVHGWGEDPPFKMPVFVPTHRPHEVQVAGAQSAY"
     gene            2222..2848
                     /gene="upp"
                     /locus_tag="VF788_18255"
     CDS             2222..2848
                     /gene="upp"
                     /locus_tag="VF788_18255"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020643400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEX8936079.1"
                     /translation="MDVMVVENALLSAAVAKLRDSRTDAEGFRSALSAISTVVILEAG
                     RHEPIIEAQIMTPVSPAIGVELTNPPLLVPILRAGLGMLYAGLSLMPTATVGFVGLSR
                     DERTLTPSCYMMSLPDSIAGQSTYILDPMLATGGSAAYTARLLAERGASHVTIVCAIA
                     SPEGLHFIQDSKLPIKRVVTANVDDRLNDIGFIVPGLGDAGDRQFGGV"
     gene            complement(3166..4116)
                     /locus_tag="VF788_18260"
     CDS             complement(3166..4116)
                     /locus_tag="VF788_18260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009073945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEX8936080.1"
                     /translation="MTVTPLIIDTDPGVDDAFAIALATASPEVDLCAVTTVFGNVGIE
                     QTTSNALRLLALCGRKDVPVARGADRPLVYPHPFRATYAHGSDGLSGRREMLPMPSRE
                     LDPADAVDLMARVLRATEQPVTIAAIGPLTNIALLLATHPGLKPKIGRLVVMGGTLGC
                     GNITATAEFNIWSDPEAARRVLTEEDLRTVLVPMDLTMRCAVDKDWLAQLEAAGPVGS
                     TLVSLTPTYLDHYRRALGREALVLHDAVALAEAVRPGILDCTPLPLDVECSLGPARGA
                     VLVDRRAISSDEPTTGRPVDLALDADLAELRKFLLDRIGR"
     gene            complement(4512..>4794)
                     /locus_tag="VF788_18265"
     CDS             complement(4512..>4794)
                     /locus_tag="VF788_18265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936081.1"
                     /translation="QFGRIGQLDRSRWTPFLQLSYLRFLTVGFIGTIVATALALIYVV
                     VNFVLSQLAVWLERRAGTRMRRNVAGSGGAGTSTRGRLGRTAAAPSTLA"
BASE COUNT          931 a         1507 c         1466 g          890 t
ORIGIN      
        1 gcctggcagc tacaacgtcc atgtcattct gaactgaacc accccgggtc tgatggaggc
       61 tctgaagttc acgtgaatat cactctctgc gccgggatgg attgacgtgg ctgggttgtg
      121 gtcacgtgag ctcgtctcgc gtgaagttgg ccatgtgttg catgccgagc gcgttggggt
      181 ggaccgggga ggctggactg gttgggctgg tgccctctac ccacttggct gtgggttgtt
      241 ggcaggcgtc gtggcctggt gagcgggtgt aggtgtcgac gaagaccgcg ccgtggctgc
      301 tggcttgggt agccagcatg gcgttaagcc gctgctccac cccatctaca tacgggacgt
      361 caccgcgggc gatcgggaag agcgggtagc agcccagcgc cgagggcagg acccgcagat
      421 accccaccag cagcactttg gcgcgcggcg atcgttgtcg gatgccttcg agtacgtggg
      481 cgatttttgg tgcagcggtg gcgatgcgct gttcgtaaag atcgacccca ccgatggtgg
      541 cctgccgcgc acaggggttg cctagcgggt cggccggacc caaccgggca cagctgaccc
      601 acagatctcc gatgttgatg tcgttgcccc cgagggtgac cgtgaccagg tcggtgtccg
      661 cccttaaggc gtcaaactgc ggtggagtgg gtccccgcgg caacggttgg gcagcggtca
      721 tatcctcggt cctcgcgcca ccgcagctca catcggtgaa atcattgatg tccaatatcc
      781 ccgccaggcg cgctgggtaa ttgccggtgg aacgctgaca atccatcgga tcgatccgct
      841 gcaccggaat tcccggaccc gacgcgtagg aatcccccag tgctacataa cgtttccaga
      901 cactcaccga cgtggccgat gcggtgctgg gcaaccccat caggaccagt acgacggcca
      961 cgacaacaca caccgcacaa cgacacacag ccacccccgc cctgccccca acctttctga
     1021 tcacaaatcg tagtagcaca cagacctgcc cacaaagtcc aactggtctt cttcaatgtc
     1081 gccgctcggc tgacacagcg cttagcgatc cactcaccgg cccgatgacc cgattcttct
     1141 ccgaagcggc agctcagcgc ggtgaacctg gatggagatg tgggccaggc accctccaac
     1201 gtgaacttcc acgactgact cgcgtgaacc tcgcctcgat agccgcccgg ctcatggctg
     1261 gcatggcgac gcacgtgtca tccccagaat gcgcgccggg acgtgcccgg aagaactccc
     1321 cgccccccgg gcgagttccc cgcgttcgcc gtcctcgtcg aactgcgcgg acgatgcatg
     1381 cggcggtgat gtcgtcggtc cagatgacca tgaggccacg ccactgctgt cacggtgcat
     1441 accgggacag ctgcgaagct ggtcgcgcag ctcacccatg agtgccgccc gcggccgggt
     1501 gaggttggtc atcgcagcac gcggaaccgc acatgggtgg tcctcggacc ttcgatcaag
     1561 cgggttcgct cgagccgaat ctggtcgtgg cccggatagg cgaacagccg ggtgccgccg
     1621 ccgagtagga ccggctcaat atgcagattg agcgccggcg acctggacct catgcggtcg
     1681 gtgcgtcggg acgaagaccg gcatcttgaa cgggggatct tccccccagc cgtgcacatg
     1741 gtcgtacgtg gtgcggccag cgacgaccgc gccggcggcg gcgaacacct cgtcaatcat
     1801 ccagcgttcg cctccagggg cgaggacgtt gtcagccgta ccgagcggtt gcttgtcact
     1861 gggattcggt ccggtgatga aaccaccgag cgacatcgac agggtgatca gcactatgcc
     1921 catccgggcc tgctggtagt gaacgtgccg gacctgcgta tcgccgcgtc atcccacgaa
     1981 cggcacagat cgggactcgt cctagcggca agacaaggga actcgcacac ccgaaagcat
     2041 gaatggtgga ggtagctgtc accaagggcc atctggctca tgagtgcgcg agtgacctgc
     2101 tctttggtca gtgtggggcg gttctatccg aggaaggatg gtcggccgag tcatcgatga
     2161 tctccaacag ggctgtgatg ttctgcgtgg cgtgagtctg atgtcatagt acgttgaacc
     2221 ggtggatgtt atggtagtag aaaatgcgct tctttccgcg gctgtcgcga agctccgcga
     2281 cagcaggacc gacgcggagg gtttccgatc agcgttgtcg gctatttcaa cggttgtgat
     2341 ccttgaagca gggcggcatg agccgattat cgaggcgcaa ataatgacgc cggtatcgcc
     2401 agctattggt gtcgaattaa ccaacccacc cctgctagta ccaatactca gggcaggact
     2461 tggaatgctc tacgcagggc tgtcgctgat gccaacggcg acagttggat tcgttggact
     2521 atctcgagac gagagaacct tgactccttc ctgctatatg atgtcgctcc cggattcaat
     2581 cgcaggccag tccacatata ttctggatcc gatgctcgcc acgggtggct ccgcagcgta
     2641 tacggctcgc ttgcttgccg agcgcggtgc ttcccatgta acgattgtct gtgcgatagc
     2701 ttcccctgag ggactgcatt ttattcaaga ctctaaactt cccataaagc gggttgtaac
     2761 agctaatgtg gacgatcggc taaatgatat tgggttcatt gttccagggc ttggcgatgc
     2821 gggagacaga cagtttggtg gagtctgagt catcgatggt ggcctggaac agctctcata
     2881 cttgctgatt gaggctgcga tagcagccac ctgtttcact gagtaccagt cagatgctga
     2941 ggtaagtgac ggcgcattca ccccgcctgg gcacagcgtc gcagcgatcc aggaaaacag
     3001 cgctgcgccc tcggtggaag tgatgttgcc gatgttgctg ccgagcaccg cccccgcgac
     3061 cagcgcctgc gcattcagaa ctcgtgatct taaccgggcg agccctcatc ccacgattac
     3121 cgcatcattc cgcagcctcc taacgatgtt ggtcgccagg cagactcaac ggccgatacg
     3181 gtcgaggaga aacttacgta actcggcaag gtcagcgtcc aaggccaaat ccacaggacg
     3241 gccggtggtc ggttcatcag atgagatcgc gcggcggtcg accagcacgg ctccacgggc
     3301 cgggccgagt gagcactcaa cgtctagggg cagcggagtg cagtcgagaa tcccgggccg
     3361 caccgcctcg gccagcgcca ccgcgtcgtg cagcaccagt gcctctcgcc cgagggcgcg
     3421 ccggtaatgg tccaaatagg tgggcgtgag ggagactaac gtgctaccta ctgggcccgc
     3481 cgcttccagc tgagccagcc agtccttatc taccgcgcag cgcatcgtga ggtccatcgg
     3541 gaccagcacc gtgcggaggt cttcctccgt cagcacccgt cgcgccgcct cggggtcact
     3601 ccagatgttg aactcggcgg tcgccgtgat attgccgcag ccgagtgttc cgcccattac
     3661 tacgagccgg ccgatcttgg gcttgagacc gggatgcgtc gccagcagca gcgcgatatt
     3721 cgtcagcgga ccgatcgcgg cgatcgtcac tggctgctcc gtggctcgca gtacccgcgc
     3781 catgagatcc accgcgtcag cgggatcgag ttcgcggctg ggcataggga gcatctcgcg
     3841 tcgaccgctg aggccgtcag aaccgtgcgc gtacgtcgcc cggaacggat gcgggtacac
     3901 aagtggtcgg tcggcgcccc gcgctacagg cacgtctttg cggccgcaca aggccaacaa
     3961 acgcaacgcg ttgctggtcg tctgctcaat ccccacattg ccgaaaaccg tggtaacagc
     4021 gcacaggtca acctcgggac tggcggtagc tagcgcaatg gcgaacgcat catcgactcc
     4081 cggatctgtg tcaatgatca gtggggtcac agtcatagca gtccctccac tatggcatgg
     4141 gccgtttcgg ccagcggctc ctccacgtcg caggaagaca gacctaccgc aggtaaccag
     4201 aacgcccctt atgccgccaa gattggcgga gaacgcccaa ttcaataaca cccgtgacaa
     4261 ctacctggaa ctacatcact actggaatac cgatgcgaac ccttcaccgg gatcgccagc
     4321 ctcaatacca ccctacccga gacctgtttg gatccagtca caagcacaca acctcagggc
     4381 acagctaccg cttaatggct ccgcggtcgg cactgtgccg ttcagcggga tatcacctca
     4441 cttccgtccc cgccgccacc aactcagttg cgtcgacctg acagtgccca actgcagccc
     4501 ggttttcacg gtcatgccag agtcgacggc gcggctgcgg tcctgcccaa ccgaccccgc
     4561 gtggacgtcc cggcaccgcc ggacccggcg acgttgcggc gcatgcgggt gcctgccctg
     4621 cgctccagcc aaaccgccag ctgagacagc acaaagttca cgacgacgta gatcagcgcg
     4681 agcgcggtcg cgacgatcgt cccaatgaac ccgacggtca ggaaccggag gtaggacagt
     4741 tgcaggaagg gcgtccaccg gctgcgatca agctgcccga tgcggccgaa ttgc
//
LOCUS       DASVXZ010000865         4173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_605530, whole genome shotgun sequence.
ACCESSION   DASVXZ010000865 DASVXZ010000000
VERSION     DASVXZ010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4173
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605530"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..163
                     /locus_tag="VF788_18270"
     CDS             20..163
                     /locus_tag="VF788_18270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936082.1"
                     /translation="MTNPPAAVTRLRLVAVARLEPTTILLGMPVGVLGLVLGCGGGAG
                     SDA"
     gene            complement(322..540)
                     /locus_tag="VF788_18275"
     CDS             complement(322..540)
                     /locus_tag="VF788_18275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936083.1"
                     /translation="MRVGQIFSMGGNCGDEGHHGGGHHYEHSGYYKDYGYGYRHHNYY
                     RSYYGGHHGYYGGYRNHRGGLLGLRISL"
     gene            1635..2192
                     /locus_tag="VF788_18280"
     CDS             1635..2192
                     /locus_tag="VF788_18280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HEX8936084.1"
                     /translation="MAKTLTGRRVAILAARGVEQVELVQPREAVTEAGATTELLSLKP
                     GTIQATNHDLEPADQFEVDRVVSEISFDDYDALILPGGTVNPDTLRQDSAAVAFVRDF
                     VQAGKPVGVICHGPWTLVEADVVRGRTLTSYPSIRTDIRNAGGTVLDQEVVIDGNIVS
                     SRRPDDLPAFCRAIVAHFAAVGVSS"
     gene            2217..3065
                     /locus_tag="VF788_18285"
     CDS             2217..3065
                     /locus_tag="VF788_18285"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8936085.1"
                     /translation="MNRVELLVLGSGGPFVNRWRTSSAYLLMIDGDPCVLVDAGGGVF
                     ERLGRAGIAPADLGTVLLTHTHIDHTGGLAPVVFSAFMEGRQDPLTIVGPAAGNDQPG
                     CRRFVELLFGREGAWSYLHSFAGFGINAHEVPSDPTRDAQVTVIDDGIVQVRAVAVPH
                     GMMPALAYRIDLGGVAVVFSGDVQEFHPSLVELAAGCDTLICNLALPEREVEHSHLHA
                     KPSQVGKMAEESGARQLVLTHFMPEIEDELPDAVDEVCSRYHGELILAEDLLRVPVPP
                     RRTFQR"
     gene            3156..3703
                     /gene="folE"
                     /locus_tag="VF788_18290"
                     /pseudo
     CDS             3156..3703
                     /gene="folE"
                     /locus_tag="VF788_18290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657899.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
     gene            3807..>4173
                     /locus_tag="VF788_18295"
     CDS             3807..>4173
                     /locus_tag="VF788_18295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936086.1"
                     /translation="MTSREVASPQVEVAETRTEPAEAPTAIERAARQEAARSNAADSK
                     LSDVSSLRVGPTVGSVVPQRVLHRVVMPRADDPPEVRPLYLDEPETLHGRTAEVLSRS
                     AVTLPPACQLSFATYFNAFP"
BASE COUNT          722 a         1308 c         1377 g          766 t
ORIGIN      
        1 ctgacggtga agtgatctga tgacgaaccc gcccgccgcc gtaacccggt tgcggctggt
       61 tgccgtcgcc cggttggaac cgacgacgat cctgctcggg atgccggttg gcgtgctagg
      121 gctcgtgctg ggctgtggcg gtggcgcggg cagcgacgcc tgacaccatc atggtcagca
      181 acttcgccta cgggccgttg tcgtggacgg ttgctcctga aacgaagatc acagtgatga
      241 acaaggatca cgaggaggcg gcccccatcc cgctgaggca tgcgatgagg gccgccgcgt
      301 gactacgcgc gagtcaaact cctagagaga gatacggagt ccaagcagtc cgccgcggtg
      361 gttgcggtag ccaccgtagt agccgtggtg cccgccgtag tagctcctgt agtagttgtg
      421 atggcgatac ccgtagccgt agtccttgta gtaaccactg tgctcatagt ggtgaccccc
      481 gccgtggtga ccctcatctc cacagttgcc acccattgag aagatctgtc cgaccctcat
      541 ttgcccctcc tcttaacttc gcgtcccagg aatgttcttc ccgaggcgac gctggatgca
      601 tccttccgct cgagggaaat gaagccccga agcggctccc acttcatgac ggttcctacg
      661 gcgaatgcgc gccccagtcc tacatcgtgg tgatcggtgg cgacaccgtg accaagtcca
      721 cgacgaacca tcacatgttc actcgtactc cgatctttct ccagtcgcaa ctctgattac
      781 tgaccttact gagagtgttg atttacggtc ggctattggt cgctttgtac tcaatgtccg
      841 taaatgccgc gagtcgtcat cggcggcggg atcatcggcc tggcggtggc gcgcgtgctg
      901 ctgggggcgc cggcacggtg tcgcagtgtg cgagaaagag cgcacgtggg gccgcgcgtc
      961 agagcggcca caacagcggg gtaattagct cagggctgta taccggcccg gcgggctcaa
     1021 agcccggctg tgcgcggccg ggcagcgtcg atggcggcgt ccgctcggga gcgtgacctg
     1081 cccgtcgagg tgggtggcaa gctcgccggc cgtgcatgat ggcatgttgc ccgggctgaa
     1141 ggagttggcg tgccggggtg ttgccaacgg gcaccggtgc gttggatgga cgccgtgcag
     1201 gttcgggact gtgcccgcgc cagcggggta cgggctctgg tggtgggtgt gtacggtgcg
     1261 ctactggatg atttcgtagt gcaggccccg ccgcggcaag tacatgtact aatgcaccgt
     1321 caccggcagc gaccaccgcc ctggagattg cccgatatgt tgctgcgcag ctcgctgaaa
     1381 cactgccgta cgtcatctcc attcatcgat tgtgaccata ttgtaattag agtgtggggt
     1441 gcgccccctg atctaggtac gggcagcgat gtgacgaccc cggccggtag caatacgacg
     1501 ttaccgctcg tgaccggaac aacacgcaaa cgtggtttac cgcgcaatgc ccgcgggtat
     1561 gccgcggcag ccggggagtc ggctaggagc agtcggcaat agttgcgaca tggaaatgag
     1621 aagggacaca ggaaatggcg aagacgttga ccggccggcg ggtggccatc ctcgcggcgc
     1681 gaggcgtgga gcaggtcgag ctggtccagc cacgggaggc ggtcactgaa gcgggcgcca
     1741 cgactgagct gctgtccctg aagccgggca cgatccaggc caccaaccat gacctcgaac
     1801 cggctgatca gttcgaggtg gaccgggtgg tttcggagat ctccttcgac gactacgacg
     1861 cactgatcct gcccggcggt acggtcaacc ccgatacgct gcggcaagat agcgctgcgg
     1921 tggcgttcgt gcgggacttc gtccaggccg gcaagccggt cggcgtgatc tgccacgggc
     1981 cgtggacgct ggtggaggcc gacgtcgtcc gcgggcgcac gctgaccagc tacccgagta
     2041 ttcgcaccga catccgcaac gcgggtggca ccgtgctcga ccaggaagtc gtcatcgacg
     2101 gcaatatcgt ctccagccgt cggcccgacg acctcccagc cttctgccgc gcgatcgtgg
     2161 cacacttcgc cgctgtgggg gtgtcctcgt aacggggagc gcggaggtga cgcgtgatga
     2221 accgggttga gcttctggtc cttggcagcg gcggcccctt tgtcaatcgc tggcgcacct
     2281 catctgccta tctcctgatg atcgacggtg acccgtgcgt tctggtggac gccgggggcg
     2341 gggtgttcga gcgtctcgga cgcgcaggca tcgccccggc agatcttggt acggtgttgc
     2401 tcacccatac ccatatcgat cacaccggcg gcctcgcccc cgtggttttc tcggcgttca
     2461 tggaagggcg gcaagatccg ctcaccatcg tgggtcccgc cgcaggtaac gaccagcctg
     2521 ggtgcaggcg gttcgtggag ttgctgttcg gtcgggaagg tgcctggagt tacctgcatt
     2581 ccttcgccgg cttcgggatc aacgcccacg aggtacccag cgatcccacc cgcgacgcgc
     2641 aggtgacggt gattgacgac ggcatcgtgc aggtgcgcgc ggtggcagtg ccgcacggga
     2701 tgatgcctgc tcttgcctac cggatcgacc tcggcggtgt cgcagtggtg ttcagcggcg
     2761 atgtccagga gttccacccg tcgttggtcg agttggctgc aggctgtgac accttgatct
     2821 gcaacctggc gttgcccgag cgcgaggtcg agcacagcca cctgcacgcc aagcccagcc
     2881 aggtcgggaa gatggctgag gaaagcgggg cccggcagct ggtgctcacc catttcatgc
     2941 cggagatcga ggacgagctt cccgatgcgg tagacgaagt ctgcagccgc taccacggag
     3001 agctgatcct ggccgaagac ctgctccgcg tgccggtgcc gccgcggcga acgtttcagc
     3061 gttgaaccct cattctatga tcaatccatt ttgacggaac agctatagtg gttggccgtc
     3121 acgccaacct tcaggtagta cccacgcggg agaacctgga cctgcaagcg gttgagcaag
     3181 cggtgactga cctgctgacg gctctgggca ggaatccgag ctctgagcac ctgtcagaga
     3241 cgccgcgccg ggtcgcccac tccttcgccg agctgctcac tccgcgagag ttcgacctga
     3301 ccactttccc gaacgacgcg ggctacgacg agctggtgct cgccaaaaat atccccatgc
     3361 aatcgctgtg cgagcaccac ctgctgccct ttcatggcgt cgcccatgtc ggctacctgc
     3421 ctggtaagcg cattcttgga ctgtcgaagc tgccccgcgt cgtcgagctg ttcgcctgcg
     3481 acttgcaggt tcaggaacgt ctcacccagc aggtcgccga cgggctgcgg agcacctggc
     3541 ccccaaaggg gtcggcgtag tgatcgaggc ggagcacctg tgcatgtccc tgcgaggtgt
     3601 gcgagccacc ggctcacgca ccgtgacgtc agcattgcac gggctactgc gggagaacgc
     3661 cccctcccgg caagaattct tcgcactgag cgggatcaga taggaagaca cggcgcgaag
     3721 acggtcatgg accctcccac cgtgcgttac cctccgtccg gctgcgagga tcaacgcgag
     3781 ccgggggtga cgcaggagag gatcacgtga cttccagaga agtggccagc ccgcaggtcg
     3841 aggttgccga gacgcgcacc gaaccggctg aagcacccac ggcgattgag cgggcggccc
     3901 ggcaggaggc agcgcgcagc aacgcggccg acagcaaact gtcggatgtc agctcgctgc
     3961 gggtgggtcc cacggttggt tcggtcgtgc cgcagcgtgt cctgcaccgc gtggtcatgc
     4021 cccgggccga tgatccgcca gaggtacgcc cgctctacct cgacgaacca gagaccctgc
     4081 acgggcgcac cgcggaagtc ctctcccgat cggcggtaac gctgccaccg gcctgccagc
     4141 tgtccttcgc cacctacttc aacgcctttc cgg
//
LOCUS       DASVXZ010000866         1501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1137531, whole genome shotgun sequence.
ACCESSION   DASVXZ010000866 DASVXZ010000000
VERSION     DASVXZ010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1137531"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1421)
                     /locus_tag="VF788_18300"
     CDS             complement(<1..1421)
                     /locus_tag="VF788_18300"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8936087.1"
                     /translation="MVYQDTTLTYTQLNTHANQLAHMLITRGVGRECAVAVLVERSIE
                     LVVSILAVLKAGGFYVPLDTRYPLTRMELIITETGASVLVTDQTGTAHPLPAGVRVVV
                     VDAGRGDAKASSGNPGIRGNPEQLAYVMYTSGSTGTPKGIAITHRDVMELACDPCWCS
                     GDHQRVLLHSPPAFDASTYELWIPLLTGAQVVVAPPGELNITTLERVITQHKATGLWL
                     TASLFHLIAEQSPDCLAGVRQVWAGGEAVSGVAIARVQEACPAISIVNGYGPTETTTF
                     ATRHPMRAAHDAAHTVPIGRPMANTRVFVLDAGLQLVPPGTVGELYIAGAGLARGYLG
                     RPGLTAQRFVACPFGPGGARMYRTGDLVRWNGDGNLEFVGRVDDQVKIRGFRVEPGEI
                     ETVLRQCPGVAQAVVIAREDRPGDQRLVGYVVAVTGGVLVAQLVREFVRGQLPEFMVP
                     AAVVVLDGLPLTPNGKLDRAALPA"
BASE COUNT          322 a          511 c          404 g          264 t
ORIGIN      
        1 gccggcaacg ccgcccgatc caacttccca ttcggggtta agggcaaccc atccagcacc
       61 accaccgccg ccggaaccat aaactccggt agttgccccc gcacgaactc gcgcaccagc
      121 tgcgccacca acaccccgcc cgtcaccgcc acgacatagc caaccagccg ctgatcccca
      181 ggccgatctt cacgcgcgat caccactgcc tgcgccaccc cgggacattg ccgtaacacg
      241 gtttcaatct ccccaggctc aacccgaaac ccccgaatct tcacctgatc atcaacccgg
      301 cccacgaatt ccaaattccc atcaccattc cagcggacca gatccccggt gcgatacatc
      361 cgcgccccac caggaccaaa cggacacgcc acaaaccgct gcgccgtcaa accaggccga
      421 cccaaatacc cccgagctaa tcccgcacca gcgatataca actcacccac cgtcccaggg
      481 ggcaccaatt gcaaaccagc atcgagtaca aacacccgag tattcgccat cggccgacca
      541 atcggcacgg tatgcgcagc gtcatgtgct gcccgcatgg gatgacgcgt agcgaaggtg
      601 gtggtttccg tgggtccgta tccgttgaca atgctgatgg cggggcaggc ctcctgcacc
      661 cgggcaatag cgacgcccga gactgcctcg cccccggccc agacctgccg tacaccagcc
      721 aagcaatccg ggctttgctc agcgattaag tgaaataggc tcgccgtcag ccacaagccc
      781 gtggccttat gctgtgtgat cactcgttcc aaagtggtga tgttcagctc gccgggtggg
      841 gcgaccacaa cctgtgcacc ggtcagcaga gggatccaca gctcataggt ggaggcgtcg
      901 aacgccgggg gagagtgcag tagtactcgc tggtgatccc cactgcacca acacggatca
      961 cacgccaact ccatgacgtc acggtgggtg atcgcgatgc ccttgggtgt tccggtggaa
     1021 ccggaggtgt acatgacgta ggcgagctgc tcggggttac ctcggattcc cggattgccc
     1081 gagctcgcct tagcatcacc ccgccccgcg tcaacgacta caacccgcac gcctgcgggc
     1141 agcggatgag ctgttcctgt ctgatcagtt accagcactg acgcaccggt ctccgtgatg
     1201 atcagttcca tgcgcgttaa cggatagcgg gtgtccaacg gtacgtaaaa tccaccagct
     1261 ttgagcactg ccagaatcga tacaaccagc tcaatcgaac gctctaccaa caccgccacc
     1321 gcgcactccc ggcctacacc gcgggtgatg agcatgtggg cgagttgatt agcgtgggtg
     1381 ttgagctgtg tgtaggtcaa ggtagtgtct tggtagacca ccgcaatcgc atctggggtg
     1441 gtggctactt gctgttcgaa cagttgcggt atgcagtttg gggggattgg tacggtggtg
     1501 t
//
LOCUS       DASVXZ010000867         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_964702, whole genome shotgun sequence.
ACCESSION   DASVXZ010000867 DASVXZ010000000
VERSION     DASVXZ010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964702"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VF788_18305"
     CDS             <1..199
                     /locus_tag="VF788_18305"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224122.1"
                     /note="mycothiol biosynthesis; catalyzes the ligation of
                     cysteine to a mycothiol precursor; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cysteine--1-D-myo-inosityl
                     2-amino-2-deoxy-alpha-D-glucopyranoside ligase"
                     /protein_id="HEX8936088.1"
                     /translation="ARPAGPPPQEVVRLLRARLADDLDTAGALAVVDAWATETLTGRG
                     RDGHAPELMRAAVDALLGIAL"
     gene            199..1359
                     /locus_tag="VF788_18310"
     CDS             199..1359
                     /locus_tag="VF788_18310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphatase/phosphodiesterase
                     family protein"
                     /protein_id="HEX8936089.1"
                     /translation="MLDAPQLTDNQRMSLADVVSSLLSGLGVAGFTDRLGLTPARGVC
                     LLLVDGLGWRALRRHPTDAPFLTSLAEGSQPITSGFPSTTAASVSTIGTGMPAGQHGI
                     VGFSFAIPDGVLINALSWHTHGAGKRVDLRERFVPEEIQPRRTALERAAAAGVQVTLA
                     VPQVHHGSGLTRAVLRGGDIQDVHALGDLAGNVLAAVSGRERTFCYAYHGDLDLLGHV
                     YGVESLPWRLQLGHIDRLAATIAEGLPPGTQLVVIADHGMVTVPEEARLDFDTEPALQ
                     AGVRLLGGDPRARYIYTDPGATDDVVAAWSELIGDRAWICTRDEAIAAGWFGPVVEPR
                     IRDRIGDVVVAARTDFAVVRSQVTPKLSRLIGHHGSLTADEQLVPLLVHRHD"
     gene            complement(1435..>1626)
                     /locus_tag="VF788_18315"
     CDS             complement(1435..>1626)
                     /locus_tag="VF788_18315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEX8936090.1"
                     /translation="TVSEMADEDDEVASYVRALEERGDTDLTLHEASGDAIAADFERY
                     LRRRRPGGTSGPRGPRDSR"
BASE COUNT          243 a          539 c          548 g          296 t
ORIGIN      
        1 cgcacgaccc gcgggcccac cgccgcagga agtggtgcgc ctgttgcgcg ctcgtctggc
       61 cgatgatctg gacactgctg gcgccctcgc ggtggtcgac gcgtgggcca ccgagacgct
      121 aaccggccgc ggccgtgacg ggcatgctcc tgagctcatg cgggctgcag tggatgccct
      181 gctgggcatc gcattgtgat gctggacgct ccacagctaa ctgataacca gcgcatgtcc
      241 ctagccgacg tggtgtcctc attgctgtct ggtctgggcg tggcggggtt caccgatcgg
      301 ctggggttga ctccggcacg aggtgtctgc ctgctcctcg tagacggcct cgggtggcgc
      361 gcgttacgga gacaccccac cgacgcccca ttcctcacgt cattggccga gggaagccag
      421 ccgatcacgt ccgggtttcc ctcgacgaca gcagccagtg tctccaccat tggcactggc
      481 atgccggcgg gccagcatgg aatcgtcggc ttctccttcg ccatccccga cggcgtcctg
      541 atcaatgcgt tgagttggca cacgcacggt gccgggaagc gggtcgatct tcgagagagg
      601 ttcgtgcccg aggagatcca gccgcgccgt acggcattgg agcgggccgc ggcagcggga
      661 gtgcaggtca ccttggcggt tccgcaggtg catcacggtt cgggtttgac ccgcgcggtg
      721 ctgcgcggcg gcgatatcca ggacgttcat gcgctgggag atctggcggg caatgtgttg
      781 gctgcggtgt ccggacgcga gcgaacattc tgctacgcct accacggcga cctggacctg
      841 ctggggcatg tctacggcgt cgagtcgctc ccatggcggc tgcaactcgg tcacatcgac
      901 cggctggcgg ccacgatcgc ggaaggcctc cccccaggta cccagctcgt ggtgatcgcg
      961 gaccacggca tggtgaccgt acctgaagag gcccggctcg acttcgatac cgaaccggcg
     1021 ctgcaggcag gggtgcgctt gctcggcgga gatccccgcg ctcggtatat ctacaccgac
     1081 ccgggtgcca ccgacgatgt ggttgcggca tggagtgagc tgattgggga ccgagcgtgg
     1141 atctgcaccc gcgacgaggc catcgcagca ggatggttcg gtccggtagt cgagcctcgt
     1201 atccgcgacc gcatcggtga cgtcgtcgtc gccgcccgca cggatttcgc tgtcgtgcgg
     1261 tcgcaggtca cacccaagct gagccgcctg atcggccacc acggttcgtt aaccgccgac
     1321 gagcaactgg taccgctcct ggttcaccgc cacgattgag ttccgccggc aacgtcgaca
     1381 ccgtcctggc cgcacttcta ccggccgcgt tgcctactcg tgtgtgcggc tccgctaacg
     1441 gctgtcgcga ggtccgcgag gtccggaagt accgccgggg cgacgacggc gcaggtagcg
     1501 ctcgaagtct gcggcaatgg catccccgct ggcctcatgc aaggtgaggt cggtgtcgcc
     1561 gcgttcctcc agagcacgca cgtagctggc gacctcatcg tcctcgtcgg ccatctcgct
     1621 aaccgt
//
LOCUS       DASVXZ010000868         6649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1138029, whole genome shotgun sequence.
ACCESSION   DASVXZ010000868 DASVXZ010000000
VERSION     DASVXZ010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6649
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1138029"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..688
                     /locus_tag="VF788_18320"
     CDS             161..688
                     /locus_tag="VF788_18320"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEX8936091.1"
                     /translation="MGDDQADRSVHGGPDKAVYAYAREDLGWWSGGRSAPLASGVFGE
                     NLTVNGVAVTHAVIGERWRVNDVLLEVCGPRIPCYKLGIRMGEDGFPRLFAAVGRPGA
                     YLRILTEGTVAAGDVLTVEHRPAHGVTVRTVADVFHRDHSRAAELLAAPELAEVWQSW
                     ARSLLDRRRKQASAR"
     gene            1079..2167
                     /locus_tag="VF788_18325"
     CDS             1079..2167
                     /locus_tag="VF788_18325"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8936092.1"
                     /translation="MILQTYRVSIEAEGADARPAWDDLVAQSSDVALSKTPQWADCVC
                     TSDHFSDATLLLRGEDGRRVIFPRLRNPTIPGLFSSPPRHWNLGADASGFLSEGSPVS
                     FREAGALVQEIRRHSGLRTRIVVGQDDARVWAAAVPSTVYSIARTAQVLDLRGDFSTV
                     WSKRFTSKVRSNSRKAERRGVVVESDSTGRLMPVFDTLYRSSVDRWAQERGYPLTLMR
                     WLAQRQHPQNKFASVARALGEACTVWIAWRQGEPIAGIINLTKGSRVTYWRGAMDKER
                     ARGTGANELLHRCAIEVACAHERHSYDFGLSQTVDLQRFKATFGTTEVPVHIYYFEKV
                     PTAAAEVKYYEAAKQAIRAAMRFGRTGG"
     gene            2174..3268
                     /locus_tag="VF788_18330"
     CDS             2174..3268
                     /locus_tag="VF788_18330"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEX8936093.1"
                     /translation="MRRGSSVIGVRHRWLGATMIGLALIVSGCTGGSGPASSGAPPPS
                     SQVAPLPAECADRLTEPDQANAALRRAQPGSIVCLSGEGLAGAELEVTTSGTSQQPIT
                     IVADGATMRSLNVNADYVVIQGLTLRDGDGLTMTGHGLVARNNVIYNATANGLECKNC
                     VDTVIESNTVQHADGTGIWLSGEGITVRNNTVSDSVLRTMNDADGIRFFGRGHRLTGN
                     TIKDISAAGYPHGGPHTDCFQTYDSRDVPPTYDVVIADNVCTNVDVQALIATIDDPRG
                     AAPAGQTTITFERNTVQVNGAQAVLLRHFPNVIVRDNHFSGPGDRAVKITEGSTDCAV
                     IDNTVSGNLRPFEIDRQSDRGFQESGNTSR"
     gene            3311..4921
                     /locus_tag="VF788_18335"
     CDS             3311..4921
                     /locus_tag="VF788_18335"
                     /inference="COORDINATES: protein motif:HMM:NF015013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEX8936094.1"
                     /translation="MEVVAAIEGETPTSTARNSATVAAWTLISRATGLLRVLVIGAVL
                     GPTYFANCFQAGYVVPSIVFTLIAGPVLTMVLVPGVVRAIGDGGLPRAREVLGRVAGW
                     LLAISSGVAVLLMIAAPAVAWTLSVGISDPGQRSRGLWLTTLLVLLVAPQVMLNCVAH
                     LGMAAQRACGRFALASAAPAVENVVLVLTVVLAGWYYGTGLDIDHVPVDLVIVLGVGS
                     TAAVALHAALQLFGAGRVGLLPRPSRRWRQDSEAVAVTRRLARSVGVAACPAVAMYVL
                     YALAGSVPGGVFVVQLSYSVLFSLSYVSARAVSMAALPGLANAAHREDPVTFGSAWRQ
                     GLSFAVIASLPLLVLLAGLSGPIANILANGELRHAALIGPLATCLGVVAVAQLIGGVS
                     DLGSQALYARLDDRIPRRASEVNLVVTLLAAAATLLVPAADGSRLVWLVVAILAGELA
                     AAGMVLTRLHRVIRPERFVEPRILAGVLAATVAMVPVTAAVWWFQHVHGGGQLTELAI
                     LTLGGAIALGVYALVLRATVARRTSAAS"
     gene            4969..6069
                     /locus_tag="VF788_18340"
     CDS             4969..6069
                     /locus_tag="VF788_18340"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX8936095.1"
                     /translation="MVLSQTYRMSMEAEGADARPAWENLVARDESIALSKTPEWIDCI
                     CSSSRFSDATLLFRGEDGRQLVLPRLRKNGIPSLLGVYESPPPGWGLGVDAGGLLSEG
                     GPASPTQTRALIQEIRRHPGLRTRVMVGGEDAEVWASVAPSTVYSTARTAQVLDLRGG
                     FSTVWSERFTSKVRSNARKAERRGVVVESDNTGRLVPVFDELYRSSVDRWAQERRYPL
                     SLMRWRAQRIEPKSKFATVARMMGERCTVWIAWRGGEPLAGILVLTRGPRVTYWRGAM
                     DKERARGTGANELLHRCAIETACTEERQRYDFGLYQTEELKKFKSTFGAREFPVHAYY
                     FEKLPTAAAEATCHHAAKQAVLAVVRLARTGR"
     gene            complement(6161..>6649)
                     /locus_tag="VF788_18345"
     CDS             complement(6161..>6649)
                     /locus_tag="VF788_18345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936096.1"
                     /translation="SVRLGVIAGIVVLLVACVGFVMISNNSGVYQGSIGGGFARQTAA
                     YLGPDAATVGPEYGLLRLGTQGGDLVAPHVIGIHGLVLLAVPAVLLARSAMSRVRQLQ
                     VVALAVSSVAIGLILLLAQALRQLPLDQLHPVALATLALCVLGLLAAYAVIAAALLKR
                     AG"
BASE COUNT         1116 a         2050 c         2258 g         1225 t
ORIGIN      
        1 aggcataggc gtagacggcc ttgtccgggc cgccgtgcac ccggcggtcg gcctggtcgt
       61 cgcccgcgag gttcacgccc gccacgcgca cccgcccctc gaccgggatc ttgacgatcc
      121 cgctcttcac cgtgcggccg cggtgcgggg tgtgaatgtc gtgggcgacg atcaggccga
      181 ccggagtgtg cacggcggcc cggacaaggc cgtctacgcc tatgcccgtg aagacctcgg
      241 ctggtggtcc gggggacgca gtgcccctct ggcatcgggg gtgttcgggg agaacctcac
      301 agtgaacggg gtggcggtga cccatgcggt gatcggggaa cgctggcggg tcaatgacgt
      361 gctgttggag gtctgcgggc cccgcatacc gtgctacaag ctgggcatcc ggatgggtga
      421 ggacggtttt ccgcggttgt tcgccgcggt cggccgaccc ggcgcgtacc tccgcatcct
      481 taccgaaggc accgtcgcgg ccggcgacgt cctgaccgtt gagcaccgac ctgcgcacgg
      541 ggtcaccgtg cggaccgtcg ccgatgtgtt ccaccgggac cactcgcggg ctgccgagct
      601 gctggctgct ccggaactgg ccgaggtctg gcagagctgg gctcgatcgc tgctcgaccg
      661 ccggcgcaag caggcttcgg cccggtgatc cgcgcgtcaa tcggagcgct cctgccaccg
      721 agttgaggag cgctgtccga tcgtgcccag tgcttgagtc tgcccggcgc gggcacgcca
      781 acagggcggc cagcttgcgg aagacgccct gctgtgtaaa ggggacgtgt gggtaacatt
      841 gacgggaact gctgcgatca cagagtatgc gcagcaccct tgcagcgagt aatgtggcag
      901 ttaccggccc acccgccggc gaggggtgtt gtgctcggtt attggatctg aggagttgct
      961 ggcctagcct ggcgtccagg cggtgcccgg gtttgccctg gtggtgccgc gaggaatcca
     1021 gcccttttcg gaggattgga cctgctggag tgatgcatcg cgagaaactg gccacgtcgt
     1081 gattctgcaa acctaccgag tgtctattga agcagaaggt gccgatgccc gtccagcctg
     1141 ggacgacctg gtcgcccaaa gctcggacgt tgcgctgtcg aagacgccac aatgggccga
     1201 ctgcgtatgc acttccgatc atttttcgga cgcaacgttg ctattacggg gagaagatgg
     1261 acgtcgagtg atcttccctc ggctacggaa tccaaccatt cctggactat tctcatcccc
     1321 tccacgtcat tggaatctgg gcgctgacgc aagtggtttc ctcagcgagg gaagtccagt
     1381 gtccttcaga gaggccggtg cgctggtcca ggaaattcga cgtcattccg gactgcgcac
     1441 ccgtatcgtg gtgggtcagg acgatgcccg ggtatgggcc gcggcagttc cgagtacggt
     1501 ttattccatc gctcggacag cgcaggttct cgatcttcgc ggcgacttct ccacagtctg
     1561 gtcgaaacgg ttcacaagca aggtgcgatc gaattctcgg aaagcggaac gacggggcgt
     1621 tgtcgtggag tcggacagca ccgggcggct gatgccggtg ttcgatacac tgtaccggag
     1681 ctccgtcgac agatgggccc aggagagggg ttatccgtta acgttaatgc gctggcttgc
     1741 gcaacgccag cacccgcaga acaagttcgc ctcggtagcg cgtgcgttgg gggaggcttg
     1801 cactgtttgg atagcgtggc ggcagggcga gcctatcgcc ggcatcatca atttgacgaa
     1861 gggctcccga gtcacttact ggcggggcgc catggacaaa gagcgggcgc gtggcaccgg
     1921 cgcgaacgaa ctcctccatc gttgcgcgat cgaggtggcc tgcgcccatg aacggcatag
     1981 ctatgatttc ggcctatctc aaaccgtcga tctacagaga tttaaagcta cgttcgggac
     2041 aactgaagtc cccgtccaca tatactactt cgagaaagtt ccaacggccg ctgccgaagt
     2101 caagtattac gaagcggcca agcaggctat ccgggctgcc atgcgatttg ggcggacggg
     2161 tgggtagtct ctgatgcgcc gcgggtcaag cgtgatcggc gttcggcatc ggtggcttgg
     2221 cgccacgatg atcgggctgg cactgatcgt cagtggttgc acgggcggct ccgggccggc
     2281 gtcgtctggc gctccacctc cctccagtca ggtcgccccg ttaccggcgg agtgcgccga
     2341 tcgcctcact gaacccgatc aggccaacgc ggctttgcgg cgagcccaac ccggcagcat
     2401 cgtgtgcctg agtggtgaag gcctggccgg tgccgaactg gaggtgacaa cctccgggac
     2461 atctcagcag ccgatcacga tcgtcgccga cggcgcgacg atgcgcagcc tgaacgtcaa
     2521 cgccgattac gtcgtcatcc agggtctgac gctgcgggat ggagatggct tgacgatgac
     2581 cggtcatgga ctcgtcgccc gtaataatgt gatctacaac gccacggcga atggcctgga
     2641 atgcaagaac tgcgtggaca cggtaatcga atcgaacacc gtccagcatg ccgacgggac
     2701 cggtatctgg ctgtccgggg aggggatcac cgtccggaac aacacggtga gcgactcggt
     2761 gctgcgcaca atgaacgacg ccgacggcat ccggttcttc gggcgtggtc accggttgac
     2821 cggcaacacg attaaggaca tcagcgccgc cggctatcct cacgggggtc cgcataccga
     2881 ctgcttccag acctatgaca gccgtgatgt cccgcccacc tacgacgtcg tcattgccga
     2941 caacgtctgc accaacgtcg atgtccaggc cctgatcgcc accatcgacg acccccgtgg
     3001 cgccgcccca gcgggacaga ccacgatcac cttcgagcgc aacaccgttc aggtcaacgg
     3061 cgcacaagcc gtcttgttac ggcactttcc caacgtcatc gtacgggaca accatttctc
     3121 cggtccgggc gaccgcgccg tcaagatcac tgagggatcc acggactgtg ccgtgatcga
     3181 caataccgtg agcggtaacc tgcgcccgtt cgagatcgac cggcagtccg accgtggctt
     3241 tcaggaatcc ggcaacacct cgcgctgatc ctccgccggt gcgtggtgga tcttggttca
     3301 gaagcggagt atggaagtgg tggcggcgat cgagggcgaa acgcccacct ccacggcgcg
     3361 gaactcggcg accgttgccg cttggacgct gatcagcagg gccaccgggt tactccgggt
     3421 cctcgtgatc ggcgcggtgc tgggacctac ctatttcgcc aactgctttc aggccggcta
     3481 cgtggtgccg agcatagtgt tcacgttgat cgccggaccg gttctgacga tggtgctggt
     3541 acccggcgtg gtccgcgcga tcggcgacgg gggcctgccg cgggcccggg aggtgctcgg
     3601 ccgggtagcc ggatggctgc tcgcgatttc gtccggggtc gccgtattgc tgatgatcgc
     3661 agccccggca gtggcctgga cgctgagcgt ggggatctcc gatcccgggc aacggtctcg
     3721 tggcctgtgg ctgaccacgc tgctggtctt gctggtcgca ccgcaggtca tgctgaactg
     3781 cgtggctcat ctgggcatgg ccgctcaacg ggcgtgcggg cgtttcgcgc tcgcgtcggc
     3841 tgcacccgcg gtggagaacg tcgtcctggt cctgacggtg gtgctggccg gttggtatta
     3901 cggcacgggc cttgacattg accacgtgcc ggtcgatctg gtgatcgtac tcggggtggg
     3961 cagtacggcg gctgtcgcgc tgcacgcggc attgcagctg ttcggtgcgg gacgggtggg
     4021 cctgttgccg cgcccgtcga ggcgctggcg acaagactcc gaggcagtcg cggtgacccg
     4081 caggctggcg cgctcagtcg gcgtggcggc ctgccccgcc gtggcgatgt acgtgctgta
     4141 cgcgctggcc ggctcggtac ctggtggtgt gttcgtcgtg caactgtcct actcggtgtt
     4201 gttttcgctg tcctacgtca gcgcccgcgc ggtgtcgatg gccgcgctgc ccggactggc
     4261 gaacgcggcc catcgggagg atcccgtcac gttcggctcg gcgtggcggc aagggttgtc
     4321 cttcgccgtg atcgccagct tgccgctgct ggtgttgctc gcaggcctgt ccggacccat
     4381 cgcgaacatt ctcgccaacg gggagttgcg gcatgcggcg ctgatcggtc cactcgccac
     4441 ctgcctgggg gtggtggccg tggctcaact gatcggtggg gtgtccgacc tcggctccca
     4501 ggcgctctat gcgcggctgg acgatcgcat cccgcggcgg gccagtgagg tgaacctcgt
     4561 cgtgaccctg ctggccgccg cagcgaccct gctcgtccca gccgccgatg ggtcgaggct
     4621 ggtctggctg gtggtggcca tcctggccgg tgaactcgcc gcggccggga tggtgctgac
     4681 ccggctgcac cgggtaattc ggcccgagcg gttcgtcgaa ccccgaatcc tggccggcgt
     4741 gctcgcggcc acggtcgcga tggtgccggt gaccgccgcg gtgtggtggt tccagcacgt
     4801 ccacggcggc ggccagctca ctgagttggc cattctcacc ctcggcgggg ccatagcgct
     4861 cggggtctat gcactggtgc tacgggcgac cgtggcgcga cggaccagcg cagcatcgtg
     4921 atcgagttct aggccttctg catcagggca tcgagagggg acgcgcacat ggtgctatct
     4981 cagacttatc gcatgtccat ggaagcagaa ggtgccgatg cccgtcccgc ttgggaaaat
     5041 ttggtcgccc gggacgagag catcgcgctg tcgaagacgc ccgagtggat tgactgtata
     5101 tgcagttcca gtcgcttctc ggacgcaact ctgttgttcc ggggggaaga tggacggcag
     5161 ctggtcctgc ctcgcctgcg caagaacgga attccttctt tattgggagt atatgaatca
     5221 ccgccgccgg gatgggggct tggcgttgat gcgggtggtc tcctcagcga aggaggtccg
     5281 gcgtcgccca cgcaaactcg agcgctgatc caggagattc ggcgccatcc cggtctgcgc
     5341 acccgcgtca tggtgggtgg ggaggacgcc gaagtatggg catcggtggc tccgagcaca
     5401 gtatattcca ccgcccggac tgcgcaggtg ctcgatctcc gcggtggttt ttccacggtg
     5461 tggtcggaac ggttcaccag taaagtacga tccaacgccc ggaaagcgga acgacggggc
     5521 gttgtggtgg aatcggacaa tactggacgt ctcgttcccg ttttcgacga gctgtatcgg
     5581 agctccgtcg acagatgggc gcaggagcgg cgttatccgt tgtcattaat gcgctggcgt
     5641 gcgcagcgta tcgagccgaa gagcaagttc gcgacagtgg cacggatgat gggtgagcgt
     5701 tgcacggtgt ggatagcgtg gcggggaggt gagcctctcg ccggcatttt ggtcctcaca
     5761 agaggtccgc gggtcaccta ctggcggggg gcgatggaca aggaacgggc gcgtggcacc
     5821 ggagcgaacg aactccttca ccgctgcgcg attgaaaccg cctgcaccga ggagcggcag
     5881 cgctacgact tcggcctcta tcagactgag gagctgaaga agttcaagag cacttttgga
     5941 gcgcgggaat tccccgtgca cgcctactac ttcgaaaaac ttcccacagc ggctgccgaa
     6001 gcgacgtgtc accacgccgc caagcaggct gtgctagccg tcgtacggct tgcgcgcacc
     6061 ggtaggtgat gcctgcggcc tcagctcagg tgcgcggatc tgtgcgttac gcaccgtagg
     6121 aatgcaccga cctggcctcc cggagtgcgg atggagtgga tcacccagcc ctcttcagca
     6181 gggcggccgc gatgacggca tacgcggcga gcagcccgag gacgcagagg gccagtgtgg
     6241 ccagagccac cgggtgcagc tgatccagcg ggagctgccg gagggcctgg gccagcagca
     6301 agatcaaccc aatggccacg ctggagaccg ccagcgctac cacttgcagc tggcgaaccc
     6361 gcgacatcgc gctgcgggcc agcagcacgg cggggaccgc cagcaagacc aggccgtgaa
     6421 ttccgatcac atgaggcgca acgaggtctc caccctgggt gccgagccgc agcagaccgt
     6481 attccgggcc caccgtcgcg gcgtccggac ctagatacgc ggcggtctgc cgggcgaaac
     6541 cgccgccgat actgccttga tacaccccac tgttattcga gatcatcaca aacccgacac
     6601 acgccaccag caacacgacg atgccggcaa tgacgccgag tcgcacact
//
LOCUS       DASVXZ010000869         9426 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_966137, whole genome shotgun sequence.
ACCESSION   DASVXZ010000869 DASVXZ010000000
VERSION     DASVXZ010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 9426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9426
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966137"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            527..1519
                     /locus_tag="VF788_18350"
     CDS             527..1519
                     /locus_tag="VF788_18350"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006240336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HEX8936097.1"
                     /translation="MLAWRVHTQGPMSTGPLRPTREPPPRPAADELLVRVLACGVCRT
                     DLHVAEGDIPIHRPGVVPGHEVVGQVVETPDNEWEVGQRVGIAWLRRTCGRCRYCTTG
                     SENLCPRSVYTGWDADGGYAEYAAVPAEYAYPLPERYPDIELAPLLCAGIIGWRALVR
                     ANLPPRGRLALYGFGASAHLTAQIALAQGATVHVQTRSLQARELALALGASSAGDAGD
                     APPEPVDSAILFAPAGELVPSALAALDRGGTLAVAGIHLTDIPVLRYQQHLFQERQIR
                     SVTANTRQDGHEFLHFAADHNLRVVTTTYPLDGADAALTDLAAGRVHGAAVLIP"
     gene            complement(1540..2205)
                     /locus_tag="VF788_18355"
     CDS             complement(1540..2205)
                     /locus_tag="VF788_18355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEX8936098.1"
                     /translation="MDEGGAVFVDRVDAGRQLGQRLQHLRGPEVATGVVVLGLPRGGV
                     RVAAEVAAALDAPLDVIVVRKLGVPSQPELAMGAIGEGGVRLLQPETIRRSGVTPEAL
                     AAVVDREQAELTRRAGLFRGDRTPVPLTGRVAQIVGDGIATGSSARAACLVARAQGAV
                     RVVLAVPVAPFGWVHGLHDVADELIALITPRQLQAIGMWYSDFSQSSDEEVIACLRSA
                     VGR"
     gene            2482..2850
                     /locus_tag="VF788_18360"
     CDS             2482..2850
                     /locus_tag="VF788_18360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936099.1"
                     /translation="MSRQATSSDTVAPRRPSCGDSRNQLASGADVAGTEVSLAGLDGA
                     LGAVGAGAAEHATASAPKLTIATPGRILMSGSACQRWACDAGSDTAYEGKAATVTVVV
                     HAAPATRIIGVAISVVNGSP"
     gene            complement(2842..3705)
                     /locus_tag="VF788_18365"
     CDS             complement(2842..3705)
                     /locus_tag="VF788_18365"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX8936100.1"
                     /translation="MQETGVISSLTSDVAEGHTLPYHAGLMPECTTDPRRAFHLWSSD
                     GAVILRTNRTDAPGMLAGARDAFGPRILFCQSPTTMATDTCVGSALEPRIDGCLTFGD
                     YYPDLVFLLCERQATAGGGAFLVDGQRLIHAIASDPAQRPLIRFLWDVKLEQSRPDGG
                     CPARTGKPVSSRRPVVSRTCGGRLTVRRHPHQHLLDDGSPRLEDRRHLAAWARLTQQA
                     ARTAPRFQLQPGDLLCLDNYRVFLGREPCTGDDPILRKMWAWSDMAFGLPSAADLVRG
                     RFMDISAEPSR"
     gene            3704..3919
                     /locus_tag="VF788_18370"
     CDS             3704..3919
                     /locus_tag="VF788_18370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936101.1"
                     /translation="MAMSSVPGAIDGSGRLNLSRQGVEITTERDPSYSVSQQQPAVPS
                     PNPGMADARPGPPQRSIAQVSEPHKRY"
     gene            4590..5012
                     /locus_tag="VF788_18375"
     CDS             4590..5012
                     /locus_tag="VF788_18375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936102.1"
                     /translation="MALVVLTVVVIALLIAALAIFLFRIGMLLNRTAGDLEDCAQSVK
                     KISNQAEPIGPGVVRINETGTTILGALPLLCDGAERVAVAKGAPYADPSEAAPTAGRH
                     RDRVRAAAPADDPSSMAPSRGVGYQDEERKGSLGYLDA"
     gene            5125..5391
                     /locus_tag="VF788_18380"
     CDS             5125..5391
                     /locus_tag="VF788_18380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936103.1"
                     /translation="MTLWWIGDLILLFLVLPIVAVLMHRIVAPVDRIRAAVDDILHDG
                     VILTGKLDNVPDLLAVTDGAVKGIATGATSYVKRVGHLLGALGV"
     gene            5433..5660
                     /locus_tag="VF788_18385"
     CDS             5433..5660
                     /locus_tag="VF788_18385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936104.1"
                     /translation="MPLAAWVTLLAIALIVAVVGISLLKVIYQLKHVAWTLGAVIVGV
                     NAIAHQTRTVPEVLPSVNANLAPVRAMAEQV"
     gene            complement(6230..6655)
                     /locus_tag="VF788_18390"
     CDS             complement(6230..6655)
                     /locus_tag="VF788_18390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HEX8936105.1"
                     /translation="MSVFSIGEAARLLGVSDDTLRHWADAGQLALTPTKSGRRGVDGA
                     ELARFVTSLNTTPNDSLAPQHVSARNEFPGLVTRIIRNQVMAQVEIQAGPHRIVSLMP
                     VEIVDKLKLKPGVQAVASVTSTNVIIHTRPTIAQEPDVI"
     gene            complement(7539..9182)
                     /locus_tag="VF788_18395"
     CDS             complement(7539..9182)
                     /locus_tag="VF788_18395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HEX8936106.1"
                     /translation="MTVRWTELVIITLLFALVTGLGFYAARWKAASLDHLDEWGLGGR
                     RFGSWVTWFLIGGDLYTAYTFVAVPALMFGAGAMGFFALPYTVLVYPLVFLPLVRLWS
                     VSRVHGYVTPADFVAGRYGSATLALLVAVTGIVATMPYIALQLAGLEAVLRTMGLNGS
                     GLAGHAPLFVAFVILAIYTYQSGLRAPALIAFVKDTLIYLVIIAAVIILPAKLGGWGS
                     IFDAADAKFAATKTPADGILLGANNQLQYVTLALGSALALFLYPHAVTGALASRSRNV
                     IKRNMVALPAYSLILGLLALLGYAAIAAKTKPIVNAATGRPDSNTVVPMLFEGQFPAW
                     FAGIAFAAIGIGALVPAAIMSIAAANLWTRNIYKVYLRRGATAEQECKQAKIASLVVK
                     LGAVVFIVFIDPQYAIDLQLIGGVIILQTLPMVAIALYTRWFHIWGLVAGWAVGMGWG
                     LVMLYGIPNPTTGKQHFGGSALALDKLSILGWHPLSGSPIQIYVGFVALLGNLLVAVV
                     MTIMLRQMRVFNGTDETNPSDYLEDEGSPRLRPVANMLR"
     gene            complement(9179..9409)
                     /locus_tag="VF788_18400"
     CDS             complement(9179..9409)
                     /locus_tag="VF788_18400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HEX8936107.1"
                     /translation="MSSGSSSARPPSRPVPRWSGWNLLLLLPLLSLVTPLYNSDKPRL
                     FGFPFFYWLQFMFIPLGVVCVAVVHLRTRERR"
BASE COUNT         1792 a         2948 c         3043 g         1643 t
ORIGIN      
        1 tgccgatata gccaaaacca ccgccccagc cgggaccgcc gtcgtggaaa ctttggaggc
       61 ggcagatctt ccagatccgg gtggaggctg atgtactcgg ctatctcgtg ctcccacaac
      121 gagtggtcga tgcccttcac cgtccgaccc ttctcgatcg acggattgtc accaaatgtc
      181 gatcgtggct cgagtccagc gtttcgccga tgccatccta gcgttctcat cgaccaccag
      241 cgtggcaacg ttaccaattc taaagctatt cctctgatca tcactgtagg tctctcctca
      301 aacaccctcg gccatccgat tccgaaaata atgccgaggt gattaacaca gccgacgcga
      361 aaggcgcgat ggaaatcgca gcaacgccac cgccttcgcc gtgtcacgat gcgggcaaaa
      421 cagactatac cggcttttct gctcatattt cggatgccag tgggctagaa gctcgcgttc
      481 agacacggcg aagaggcgga cagcagggtg cgccattatg gggtgggtgc tggcatggcg
      541 ggtgcacacg cagggaccga tgagtactgg cccactgcgc ccgacccgcg aaccgccgcc
      601 gcggccggcc gctgatgagc tgctggtgcg ggtgctggcc tgtggagtgt gccgcaccga
      661 cctgcacgtc gctgaaggcg acatcccgat tcaccggccg ggcgtcgtac ctggtcatga
      721 ggtggtcggt caggtcgtcg agacacccga caatgaatgg gaggtgggcc agcgggtcgg
      781 catcgcatgg ctgcgccgta cctgcggacg gtgccgttac tgcaccactg ggtcggagaa
      841 cctgtgcccg cgctcggtct acaccggctg ggacgccgac ggggggtacg ccgagtacgc
      901 cgcagtgcct gccgagtacg cctacccgct gcccgagcgc taccccgata tcgaactcgc
      961 accgctgctg tgcgcgggca tcatcgggtg gcgggcactg gtccgggcaa acctgccgcc
     1021 gcgcggccgt ctagccctct acggattcgg agcgagcgcg cacctcaccg cccagatcgc
     1081 ccttgcgcag ggtgccaccg tgcacgtgca gacccgcagc ctgcaagccc gcgagcttgc
     1141 cctggcgctg ggtgccagct cagcaggaga tgccggcgac gcaccgccgg aaccggtcga
     1201 ctccgcgatc ctgttcgccc ccgccggaga gctggtgccc tccgcactag ccgcgctcga
     1261 ccggggcggc accctagcgg tggccggaat ccacctgacc gacatccctg tgctgcgcta
     1321 ccaacagcac cttttccagg aacggcagat ccgcagcgtc acagccaaca cgcgccagga
     1381 cggtcacgag ttcctgcact tcgccgccga ccacaacctg cgggtggtga ccaccaccta
     1441 cccgctggac ggggccgatg cggcgctgac agatctcgca gccggccggg tgcacggtgc
     1501 agccgtgctc attccttgac ggtctcatcg ccgacgctct catcgaccga cggcgctgcg
     1561 caggcaggcg atgacctcct cgtcggagct ttgggagaaa tcggagtacc acatgccgat
     1621 cgcctgcaat tgccggggag tgatcagcgc gatcaactca tcggcgacat cgtgcagccc
     1681 gtggacccaa ccgaacggtg ccaccggaac ggcgagaacg acccgcaccg cgccctgagc
     1741 gcgtgctacc aggcaggcgg cccgcgcgct cgagccggtc gcaatgccgt caccgacgat
     1801 ctgagcgacc cgcccggtca gcgggacagg ggtccgatca ccgcggaata gcccggcgcg
     1861 ccgtgtcagc tcggcttgtt cccggtccac gaccgcggcc agcgcctccg gggtgacgcc
     1921 cgagcggcgg atcgtctcag gctggaggag acgcactcca ccttcaccga tggcgcccat
     1981 ggccagctcg ggttgcgacg gtacgcccag tttgcgcacc acgatcacgt ccagcggagc
     2041 gtcaagagca gccgccacct cggccgccac ccgaaccccg ccgcgaggca gaccaaggac
     2101 cactacgcca gtggccacct cgggacctcg caggtgctgt aaccgctgcc ccagctgccg
     2161 ccccgcgtcg acccgatcaa cgaacaccgc gccgccttca tccatcgagg ccgattatcc
     2221 gccttctggg aaggttgtgc tctccagcga cgcgatcggt ggaccgcgat acggcagcga
     2281 gtcttcagcg gtcaggggtg cggtacaacg gtgaaagcag cggagagctg gtcagtaccg
     2341 cagttggccg aaaccagata ccggccagga gcggcgtccg gacggacagt cgcggtaccg
     2401 gttaggtgcc aaggttggtg gccgtcggga tcgctcttca acgcgccgac ctcgagtacc
     2461 ggtgactgga ccggaccaag gttgtccagg caggccacat cgagcgacac ggtcgcgccc
     2521 cgcaggccct cttgcggcga cagccgcaac cagctcgcct caggcgccga cgtcgccggc
     2581 accgaggttt cgctcgccgg actcgacggt gcgctgggtg ccgttggcgc gggtgccgcc
     2641 gagcatgcga cggcgagcgc ccccaagctg acgatcgcaa cacccggccg gatactcatg
     2701 tccggctcag catgccagcg atgggcgtgc gatgccggta gcgacacagc ctatgaaggc
     2761 aaagcggcga cggtcaccgt cgtcgtccat gctgcgcccg ctacccggat catcggggtc
     2821 gcgatcagcg tggtgaatgg ttcaccgtga tggttccgca ctgatgtcca tgaagcggcc
     2881 gcgcaccaag tccgctgcac ttggcagccc gaatgccatg tcgctccaag cccacatttt
     2941 acgcaggatc gggtcgtcac cggtgcaggg ctcacggccg aggaagaccc ggtagttgtc
     3001 caggcagagc aggtcgccgg gttggagctg gaaccgcggc gccgtgcggg cggcttgctg
     3061 ggtgagcctt gcccaggcag cgaggtgtcg gcggtcctcg agccggggcg agccgtcatc
     3121 gaggaggtgt tgatgggggt ggcggcgcac ggtgaggcgc ccaccgcagg ttcgcgagac
     3181 caccgggcgg cgactggaga cgggcttgcc agtcctggcc gggcagccgc cgtcgggtcg
     3241 gctctgttcc agcttgacat cccacaaaaa tctgatcaac ggacgctgag cgggatcact
     3301 ggcgatggcg tggatgaggc gctggccatc gacgaggaac gctccgccgc ctgcggtggc
     3361 ctgccgctca cagagcagaa acaccagatc ggggtagtag tccccgaacg tcaggcagcc
     3421 gtcgatgcgc ggctcgagcg cactgcctac gcaggtatcg gtggccatgg tcgtcggcga
     3481 ctggcagaac aggatgcggg gcccgaacgc gtctcgggca ccggcgagca tcccgggggc
     3541 gtcggtgcgg ttcgtgcgta gaatgaccgc accatcgctg gaccacaagt ggaacgcgcg
     3601 ccgagggtct gtggtgcact cgggcatcag tcctgcgtgg tagggcagtg tgtgcccctc
     3661 ggccacgtcg ctggtcagtg aactgatcac gccggtctcc tgcatggcga tgtcctccgt
     3721 tcccggtgca atcgacgggt cgggccggct caacctgagc cgtcagggcg tcgagatcac
     3781 caccgagcgt gacccgtctt actcggtcag ccagcaacag ccagccgtgc cctcgcccaa
     3841 ccccgggatg gcggacgcgc gacccgggcc cccacagcgc agcatcgcac aggtttcaga
     3901 accgcataag cggtattaga cgccaatttg acctcgtatc gcggatctac caacctgcta
     3961 catcctcagt tgagcgctcc tgcctgctcc gatgatatcg ggcatctacg agtttgccgt
     4021 cgtgtaactg atccgatcga cgtggtaggc gggacggagt gatcacggag ttgggcgcgg
     4081 tgcggatcgt tgaacgagag gctgggcagg ttcccgaggt gcgtgcgcac caaccttgcc
     4141 accggagtcg ccccgggtgc tgctctagcg tgccccttct gccgcaaacc ggaccaggtg
     4201 cccaggggcg gggccaccga agcagggtaa ctctccagcg caacctgcca gccgtgctgt
     4261 cccagccagc ccgagccttc cactgttccg ctgttgcgga attttctcta gatttaatac
     4321 gcatataaga actagaatac gttgaacgtc cgattctgct gttatcacta taagcttgga
     4381 tgatcaccgt cgcgtggagg tggcatgaat gagatttgag ctgcgtgctc tgccggttgg
     4441 cctgctcgcg ggcagcccgg ccgaccgcac ccgacggtgg ggcgcaccgt ggggccgacg
     4501 gcgggtgtcg gggtgatcaa cggccgcgtg acccaccggg tcgcgctgac cgtggccagg
     4561 ttccccggac ccgaaggaaa ggatgagaga tggctcttgt cgtcttaacg gtcgtcgtca
     4621 tcgcgttgtt gatcgctgcc ctggcgatct tcctcttcag gatcggcatg cttctcaacc
     4681 gcaccgccgg cgacctcgag gactgcgcgc agagcgtgaa aaagatatcc aaccaggccg
     4741 agccgatcgg acctggtgtc gtgcgcatca acgaaaccgg taccacaatt ttaggtgccc
     4801 tgccgctgct gtgtgatggt gctgaacgcg tcgccgtcgc caagggagcc ccctatgcgg
     4861 atccttccga ggctgcgcct acagcaggcc gccacaggga ccgcgtccgg gcagctgctc
     4921 ccgcagatga tccttcttct atggctcctt cgcgcggtgt aggttaccag gatgaagaaa
     4981 gaaagggcag tttagggtac ctggatgcct gataacaggc gggcgttcgg cttcgtcgac
     5041 agtgtttgcg ccaaatagtc gttgtttgcg agcgcggcac atcctcgctg agggcgaacg
     5101 attcatgaga agagggagac agatatgacc ttgtggtgga ttggtgacct cattttgctg
     5161 ttcctggtgc tgcctatcgt ggcggtgctg atgcaccgca ttgtcgcgcc agtggatcga
     5221 atccgggcgg cggtggacga cattttacat gacggcgtca tcttgactgg gaaactcgac
     5281 aatgtgccag atctattggc tgtgacagac ggtgcggtca agggaatcgc caccggtgcg
     5341 accagctatg tgaagcgtgt tggtcatctg ctgggcgcgc tgggcgtcta gcgagctcag
     5401 ggccggggaa cccgatccag gaagaggcag tcatgccctt agccgcgtgg gtcacgttgc
     5461 tcgccatcgc gttgatcgtg gccgttgtcg gtatctcgct gttgaaggtg atttatcagt
     5521 tgaagcacgt tgcctggacg cttggcgcgg tcatcgtggg ggtcaacgcg atcgcccatc
     5581 agacaaggac ggttcccgag gtcttgcctt cggtcaacgc caacctcgcg ccggtgcgag
     5641 ctatggcaga acaggtttga gacaccaagg ggcaccagtg ccgtaagtcg ccgacgacat
     5701 ctcggagatc tgaaaaagcg gacgcggtaa acttggaggt tagcgatgcc gtatatgatt
     5761 gggtacgccg gcggaccgga cggttatgcg cctgaggaga tcaccttttg gtgggtcgcg
     5821 atagtgatgg gcgtcggcgt cttgatcgta gtgatcctct tactgggttc ccttgtgtcg
     5881 atagtgaagt ccatcaaccg aagcgcgggg gaagtacgga acaccctacg ggccattccg
     5941 gagaataccg tgaatgccgc gcttattcct gtcacggccg acagggtcga ctcggtactg
     6001 gcagagggtc tggagcatca ctcgttcttg accagggtcc tagcaggtta aggaacaccg
     6061 gcatcaccag cggtttctta cgagaccggt acagcaatac agatgatcgg caagatcgat
     6121 ccggagaccg cacacagggc gggaaggtca tcttctcttc cgaagatctc atttaaccct
     6181 ggacctccca tgtgggcgcg cggcggggtg gccggggacc gttcgacttt catatgacat
     6241 caggctcttg ggcgatcgtt ggtctcgtgt gaattatgac gttggtggac gtcaccgatg
     6301 cgacggcttg cactccaggt ttgagcttga gtttgtccac gatttcgact ggcatcagcg
     6361 acacgatccg gtgcggccca gcctggatct caacctgggc catgacctgg tttcggatga
     6421 tcctggtgac gagaccgggg aactcattgc gggccgagac gtgctgaggt gctagggaat
     6481 cattgggcgt ggtgttcagc gatgtgacga accgggccag ctccgccccg tccaccccac
     6541 gccgacccga tttcgtcgga gtgagggcga gctggccagc atcggcccaa tgacggagcg
     6601 tgtcatcgct gaccccgagc agcctagcgg cctcaccgat cgaaaatacg gacatccgcc
     6661 tacactagct gacaaaattc gcaattcaag aaccgcaaac gctgatcttc cggagagggg
     6721 acggtgcaac cacgctcagg aagcaggatg gcgtccgcgt ctgcgggagc ggatcaatgc
     6781 ctgcctggct gccttcactg tgcagtcagg cgccttggcg cgcacgggtt cgtcatcgcg
     6841 gcatggatcg cggggcctgc ggcaggatgg gtagctgatc tcggtcgata aggacgggct
     6901 gtctgtcgaa cagccatgag tctgtccgag gatgaccgag tcacggttct gatcaagtcg
     6961 accgaggtaa tgctcgccga cgaagtactg atcctcaacc tcggccggct gaagcgagct
     7021 ggccacacga tgacgctttc ggctaatgag ggagattgtc aaccggcagc gggcccccgc
     7081 tattgcgagg gcccgctgtt ttcgaactgg tcagtgctta gtcgtcccag caccactggt
     7141 ggcgacgatc ccagtgacca tgacggtggt ggtggtccca gtccttatcg cggttccggt
     7201 cccggccctt atcacggtcc cagtcttcat ggtcggctga aaatggtgtg aaaacctcag
     7261 caactcgcat cgttgcgatc cctttccctc ggtgggggac ggagtctccc cgacgcgtcc
     7321 cctacgacga ttatcggtgc gcgtcaccgg caggtttcca gcttttttca attcccaggt
     7381 aatttccata aaaggtgacg ttaagtaacc tggctttgtg ccgaggatca cccagttggc
     7441 gcgtcagacg ctgggctctt acgacgcaga cgtgatcacc ggcggcggcg caggccaggt
     7501 cgagcttgcc gggtgtcttg ccggaacggt cgggagttct agcgcagcat gttggcgacg
     7561 ggacgtaggc ggggcgagcc ttcgtcttcg aggtagtccg acgggttggt ctcgtcggtg
     7621 ccgttgaaca cgcgcatctg ccgcaacatg atcgtcatca ccacagcgac caggagatta
     7681 ccgagcaggg cgacgaatcc gacgtagatc tgaatcggcg aaccggagag tggatgccag
     7741 ccgagaatag acaacttgtc cagtgcgagc gccgagccgc cgaaatgctg ctttccagtg
     7801 gtcggattgg ggatgccgta gagcatcacc aggccccatc ccatgccgac cgcccagccc
     7861 gcgaccaatc cccagatgtg gaaccagcgg gtgtagagcg cgatcgcgac catgggcaac
     7921 gtctggagga tgatcacgcc accgatcagc tgcaggtcaa tggcgtactg agggtcgatg
     7981 aacacgatga acaccaccgc ccccaacttc accaccagcg aggcgatctt ggcctgtttg
     8041 cattcctgct cggctgtggc accgcgacgc aggtacacct tgtagatatt gcgggtccac
     8101 aggttggccg cggcgatcga catgatcgcg gccggcacca gagcgccgat accgatggct
     8161 gcgaaggcga tgccggcgaa ccaggcgggg aactgaccct cgaacagcat gggcaccacg
     8221 gtgttggaat ccggccgacc ggtggccgcg ttgacgatcg gtttcgtctt cgccgcaatc
     8281 gcggcataac ccagtaacgc gagtaatcct aatatcagcg agtatgccgg caacgccacc
     8341 atgttacgtt taattacatt gcggctgcgg gaggccaacg caccggtgac tgcatgcggg
     8401 taaaggaaca gcgccagagc cgaacccagc gccagcgtga cgtactgcag ctggttattc
     8461 gcgccgagca ggatcccgtc ggcaggcgtt ttggtggcgg cgaacttcgc gtctgcggcg
     8521 tcgaaaatgg agccccagcc accgagcttg gccggcagaa taatcacggc ggcaataatg
     8581 acaaggtaga tcagggtatc cttgacgaac gcgatcagcg ccggagcccg caggccggac
     8641 tggtaagtgt agatcgcgag gatcacgaag gccacgaaca gcggggcatg cccggccaac
     8701 ccggatccgt tgagacccat cgtgcgcagg accgcctcca gcccagctag ctgcagggcg
     8761 atgtagggca tcgtcgcgac gatcccggtg accgcaacca gcagcgccag cgtggccgac
     8821 ccgtaacgac cggcgacgaa gtccgccggg gtcacataac cgtgcacccg cgacaccgac
     8881 cacaaccgga ccagtggcag gaacaccagc gggtagacga gcacggtata gggcagcgca
     8941 aagaacccca tcgccccggc accgaacatc agcgcgggca ccgcgacgaa ggtgtaggcg
     9001 gtgtagagat caccaccgat gaggaaccag gtgacccatg agccgaaccg gcgaccaccc
     9061 agcccccact catcgaggtg atcgaggctc gcggccttcc accgcgcggc gtaaaagccc
     9121 aacccggtga cgagggcgaa cagcaacgtg atgatgacca gttcggtcca gcgcaccgtc
     9181 atcgccgctc ccgtgtcctc aggtgcacca ccgccacgca caccacgccg agcgggatga
     9241 acatgaactg cagccaatag aaaaacggaa aaccgaacag gcgcggcttg tcgctgttgt
     9301 acagcggcgt gaccagcgac agcagcggaa gcaggagcag gaggttccag ccgctccagc
     9361 gcggcaccgg tcggctgggg gggcgcgcag aggacgaacc ggacgacatc tatggatgtt
     9421 aaccgg
//
LOCUS       DASVXZ010000870         2325 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_966226, whole genome shotgun sequence.
ACCESSION   DASVXZ010000870 DASVXZ010000000
VERSION     DASVXZ010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966226"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..481
                     /locus_tag="VF788_18405"
     CDS             137..481
                     /locus_tag="VF788_18405"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8936108.1"
                     /translation="MPLVGLQVTDYGPDARVVTVIGELDALTAPMLAACLSAQLAVAE
                     VVVVNLDDLKFLASAGLRVLFEMNELAIERDRSLRFVCNCPLANLALEATGLRQHLTF
                     ADDVADALSAEP"
     gene            797..1102
                     /locus_tag="VF788_18410"
     CDS             797..1102
                     /locus_tag="VF788_18410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936109.1"
                     /translation="MTAIAEASPAVSHAGGGQDRREHHRTPDRPSRRGQQRAVPLTGS
                     RQNPARSAAAEARSLPVLLDELVELGREAWRIHQRERAVRAEIDALQEIEDNAPWPA"
     gene            1347..1595
                     /locus_tag="VF788_18415"
     CDS             1347..1595
                     /locus_tag="VF788_18415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936110.1"
                     /translation="MLPDGPGFAEAFAGIIGHQALPLPVNPLLAAPDITAAATKMDAG
                     LLVASLEQIHTLTDLGTEPPVLVDGPQEPWRPCCDCPQ"
     gene            complement(1814..>2325)
                     /locus_tag="VF788_18420"
     CDS             complement(1814..>2325)
                     /locus_tag="VF788_18420"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8936111.1"
                     /translation="CLLIRSSTARRYVRGRGLYDRAHATDELREAERRLQAAQLTGDT
                     AALEQLLADRVIFTFGPDGKCYTEQGRLHLHRSRQQVLTKVMEEDLTVLVEGRTGVTW
                     FLGALEGTFAGTPFAARLRYTRTRSDRLDEVGRYGRSALAKQDPAGLDGRCGTRFHSS
                     HNPDADRGV"
BASE COUNT          442 a          750 c          709 g          424 t
ORIGIN      
        1 aaaattgcgg tgaatcgctg gtcaacgttc ggcaaacgac gcggccgtcc gggggaatgg
       61 tccacttgac ctgctccacg gcgtgggcat tcggctggcc tgcctatatc gtacggctgt
      121 ggcaagcgac tttccggtgc cgctcgtcgg cctacaagtc accgattacg gtcccgatgc
      181 acgtgtcgtc actgtgatcg gtgagctgga cgcgctgact gccccaatgc tggccgcctg
      241 cttgtccgcc cagcttgctg ttgccgaggt cgttgtggtg aacctggatg atctgaagtt
      301 cctggcatcc gccggactgc gcgtgctctt cgagatgaat gaactggcga tagaacgcga
      361 tcgcagcctg cggtttgtgt gcaactgtcc actggccaac ctagctctgg aagcgactgg
      421 actacgccag cacttgacgt tcgctgatga cgtggcggac gcactgagcg ccgaaccctg
      481 actggatgca gctctcgacg gttgctcctc gagttggact tgaatcaaca accctgcgat
      541 taacagatga aggcaggcgc ttggtcagat tgcgcgacgt gggtatgcgg cgttcgctag
      601 gtggcgtccg agggcagcac ggtgctgctc gttgcggtca caactgcggt catcgcagcc
      661 tggcgcgcac tgcgatgatc aagtcaggaa cctcttgatc cgcggaccaa gtcagctcca
      721 agccagcgcc catcccgtgc caagcacggt gcccgatggt gagtgcatcc gacactgtga
      781 ggggagagca cctaccatga ccgccatcgc cgaagctagc ccagcggtgt cccatgcggg
      841 cggtggccaa gaccgccgcg agcaccaccg cacgcctgac cgccctagtc gccgaggcca
      901 gcaacgggct gtgccgctga ctggttcgcg acaaaaccca gccaggagtg ctgccgctga
      961 ggcccggtca ctgccggtgt tgttagacga gctagtcgag ctcggccgtg aggcctggcg
     1021 tattcaccag cgggaacgag cggtccgggc cgaaatcgac gccctgcagg agatcgagga
     1081 caacgcaccc tggccggcct aaccggttgc atgaggttct gctcggcgac ggcatgtgtg
     1141 agcaagctat gtcacatgcg tggctcgaat cgtctattcc cgcccatgca atccaaaagg
     1201 agacacgcca cccgcgcgga gcggtgacac cgtctacaaa cctggtgact aagtcaatga
     1261 gctattccac atcggccggg caaaccgtcg cagttgccac tgcgctggct aaactcggag
     1321 tgcgccccgg ggaatgagtg ctcatcatgc tgcccgacgg tcccggcttc gccgaggcat
     1381 tcgccggcat catcgggcac caagcgctgc cactaccggt gaatccgctg cttgccgccc
     1441 ccgatatcac ggcagccgcc accaagatgg acgctggact gctggtggcc tcgctagaac
     1501 agattcacac gctcaccgat ctgggcactg agccaccggt cctcgtcgat gggcctcagg
     1561 agccctggcg gccgtgctgc gattgtcctc agtaagtaat aaatccatcc gcaagcgggt
     1621 ggtgctgctg ccacacgacc gcagcaagcc cacgacgaac ctggccccac caccgcggcg
     1681 caacggaaga ccaccggcat aaaccaacgg tgactacggt gatcggcccg aaccgcgaag
     1741 ttagcaggct aggtctgtgg tggcccaggg cagcgccgtc aacgtctcat cgcgagtgtc
     1801 gatctgctgt tgtttagaca cctcggtcgg catctgggtt atgagatgaa tggaacctcg
     1861 taccacacct tccatcgagt cccgccgggt cctgctttgc cagggccgac cgtccatagc
     1921 gtcccacctc gtccagccgg tccgaccgcg tgcgggtgta ccgcagccgc gcagcgaatg
     1981 gcgtaccagc gaacgtgccc tccaacgcgc caaggaacca cgtcacaccg gtacgcccct
     2041 cgacgagcac agtcaggtct tcttccatca ccttcgtcag aacctgctgg cgtgagcggt
     2101 gcaggtggag tcgtccctgc tcggtataac acttgccgtc tggcccaaag gtaaagatga
     2161 ctcgatcggc gagcagctgc tccaacgccg cggtgtctcc ggtgagctgt gcggcttgga
     2221 ggcgacgctc ggcctcgcgc agctcatccg tggcgtgcgc tcgatcatag aggcctcttc
     2281 ccctaacgta acgacgtgca gtggagctgc ggatcaacaa acagc
//
LOCUS       DASVXZ010000871         2630 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_607827, whole genome shotgun sequence.
ACCESSION   DASVXZ010000871 DASVXZ010000000
VERSION     DASVXZ010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_607827"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..762)
                     /locus_tag="VF788_18425"
     CDS             complement(<1..762)
                     /locus_tag="VF788_18425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase 2"
                     /protein_id="HEX8936112.1"
                     /translation="MKELNGLAGATAFKPGLEGVVAFQTEIAEPDRDGGALRYRGVDI
                     EDLAGYVTFGDAWALLTDGRFGHGLPPAEPFPLPVHTGDVRVDVQAGLAMLAPIWGYR
                     PLLDSADAQTREELARASVMALSYVAQSARGIHQPAVPQDRIDQCSTITERFMTRWRG
                     DPDPAHVRAVDAYWVSAAEHGLNASTLTARIIASTGADVAACLSGAIGAMSGPLHGGA
                     PARVLPMLEEVERTGDPDPRHVEAVDAYWVSAAEHG"
     gene            1001..1678
                     /gene="pdxH"
                     /locus_tag="VF788_18430"
     CDS             1001..1678
                     /gene="pdxH"
                     /locus_tag="VF788_18430"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020499026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HEX8936113.1"
                     /translation="MVTGRGQGGERTAELAQMRVAYTDRALDEADLAGTWYEQFAGWL
                     DDAAAAGLPEPNAMVLATADADGLPSSRTVLAKGLDSQGVLFYTNLTSAKMRDLNVTR
                     FAAATFPWIALHRQVHLRGPIETLTPEQSTGYWRTRPRGAQLGAWASAQSSVVPDRCA
                     LDSALEDAAARFAGAEAVPLPPHWGGVRIRPVSVEFWQGRPNRMHDRLRYHITDNGTW
                     TVSRLAP"
     gene            1800..>2630
                     /locus_tag="VF788_18435"
     CDS             1800..>2630
                     /locus_tag="VF788_18435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020501108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HEX8936114.1"
                     /translation="MSIINATHGAPAVDLSTLRAKTGMVTLDPGLVNTALCTSEITYI
                     DGDAGVLRYRGYPIEVLAERSDFLETSYLLIHGDLPTGGQLERFTDEIRIHTLLHEDL
                     KRFFDGFPRDAHPMPVLSSAVSALSTFYQDSLDPFDHDQVEISTVRLLAKLPTIAAYA
                     YKKSIGQPFLYPDNSLGLVHNFLRMTFGLPVQPYEIDPVVADALDLLFVLHADHEQNC
                     STSTVRMVGSTHADLFSSISAGINALFGPLHGGANQLVLEMLERIHLDGGDVDAFVKK
                     V"
BASE COUNT          428 a          889 c          881 g          432 t
ORIGIN      
        1 gccgtgctcg gccgcggaga cccagtaggc gtcgacggcc tcgacgtgcc gggggtcggg
       61 gtcgccggtg cgctccacct cctcgagcat cggcagcacc cgcgccggag cgccaccatg
      121 caacgggccg gacatcgcgc cgatcgcccc ggacaggcag gcggcgacgt cggcaccggt
      181 ggaggcgatt atccgagcgg tgagagtcga ggcgttgagc ccgtgctcag cggccgatac
      241 ccagtaggcg tccacagctc tgacgtgtgc cggatccggg tcgccgcgcc agcgggtcat
      301 gaaccgttcg gtgatggtgg agcactgatc gattcggtcc tgcgggacgg ccggttgatg
      361 gatcccccgg gcggactgtg ccacgtagga cagcgccatc accgacgccc tggccagctc
      421 ctcgcgggtc tgcgcatcgg cgctgtcgag cagggggcgg tagccccaga tgggggcgag
      481 catcgccaaa ccggcttgta cgtcgacccg gacgtcaccg gtgtgcaccg gcaggggaaa
      541 tggttcggcc ggcggcaggc cgtgaccgaa gcggccgtcg gtcagcaacg cccacgcgtc
      601 accgaaagtc acatacccag cgagatcctc gatgtccacg ccgcggtagc gcaacgctcc
      661 gccatcccga tccggctcgg cgatctcggt ctggaaggcg acaacgccct ccaggcccgg
      721 cttgaaggcg gtagcgcccg ccaggccgtt cagctccttc acgacagtca cgccgtcctc
      781 ctcgcgcgcg attagggcac gcgcgggtcg ctaacggcta gcgggtgggg gcgcacgcta
      841 cagtgcggcg ccgcgcgggt ttgggtaaca gtgcacccat ttgccacgtt ggggcaatgc
      901 ggacacgggt tcggcacacc gatgggtttc ccggagcgcc gaacgggcgg cacgacgtag
      961 gttgccagca gtccgattat cagatccggg agtgtgtggc gtggtgactg ggcgcgggca
     1021 agggggagag cggaccgctg agctggcgca gatgcgggtg gcctacaccg accgcgcact
     1081 ggacgaagcg gacctcgccg gcacctggta cgagcagttc gcgggttggc ttgacgacgc
     1141 tgcggccgca ggccttcccg aacccaacgc gatggtgctg gccaccgcgg acgccgacgg
     1201 gttgcccagt tcccggacgg tcctcgccaa gggtctcgac tcgcagggtg tgctgttcta
     1261 caccaacttg acctccgcca agatgcgcga cctcaacgtc accaggttcg ctgcggccac
     1321 gttcccctgg attgccctgc accgccaggt gcatctgcgc gggccgatcg agaccctgac
     1381 gccggagcag agcaccggct actggcgcac ccgcccgcgg ggcgctcagc tgggagcctg
     1441 ggcctcagcg caatcctctg tggtaccgga ccggtgtgcg ctggacagcg cgctggagga
     1501 cgccgcggca cggttcgccg gcgccgaagc ggtgccgttg ccgccacact ggggcggggt
     1561 gcggattcga ccggtcagcg tggagttctg gcagggcagg cccaaccgca tgcacgaccg
     1621 gctgcgttac cacatcaccg acaacggcac ctggacagtc tcccggctcg ctccttagcg
     1681 ccaccagtta ttcgcacctt aatgaccgcg ttctgtctcg ggcacgctcg gcgagctaac
     1741 gtgggtgggt gtctagcgaa caagccgtga ccttggacta tccgggcggc gagcaccgga
     1801 tgtcgatcat caatgccact cacggggcgc ccgcggttga cctcagcacg ctccgggcaa
     1861 agaccgggat ggtgaccctc gacccgggac tggtgaacac cgcgttgtgc acctcggaga
     1921 tcacctatat cgacggcgac gcgggcgtgc tgcgctaccg tggttacccg atcgaggtgc
     1981 tggccgaacg ttcggacttc ctggagacca gctacctgct gatccacggc gacctaccga
     2041 ccggtggaca actggagcgc ttcaccgacg aaatccgcat tcacaccctg ctgcacgagg
     2101 acctcaagcg tttcttcgac ggtttccccc gggacgccca tccgatgccg gtgctctcca
     2161 gcgcggtatc tgcgctgtcc accttctacc aggacagcct cgacccgttc gatcacgacc
     2221 aggtggagat ctccaccgtg cgcctgctgg ccaagctgcc gaccatcgcc gcgtatgcat
     2281 acaagaagtc gatcggtcag ccgttcctct acccggacaa ctcgctgggc ctggtgcaca
     2341 acttcctccg gatgaccttc gggctgcctg tgcagcccta tgagatcgat ccagtggtgg
     2401 ccgacgccct ggatctgttg ttcgtgctgc acgccgacca cgagcagaac tgctcgactt
     2461 ccaccgtgcg gatggtcggg tcgacgcatg ccgacctgtt ctcctcgatc tccgcgggga
     2521 tcaatgcgtt gttcggtccc ctgcatggtg gcgccaacca actggtgctg gagatgctcg
     2581 agcggatcca cctcgacggc ggtgacgtgg acgccttcgt gaagaaggtg
//
LOCUS       DASVXZ010000872         1814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_608170, whole genome shotgun sequence.
ACCESSION   DASVXZ010000872 DASVXZ010000000
VERSION     DASVXZ010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608170"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..652)
                     /locus_tag="VF788_18440"
     CDS             complement(<1..652)
                     /locus_tag="VF788_18440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding monooxygenase"
                     /protein_id="HEX8936115.1"
                     /translation="MPHQPGDHAVVLGASMAGLLATRVLADAYRNVTVIDRDAMPEIG
                     AHRRGVPQGRHHHALQPRGAVILEELFPGFTKDVVQAGASSGDVLGHCRWILLGHRLR
                     QAKGGVLGLIVSRPFLESSVRTRVAALLGVTFLERADIAGLTTTPERRVTGVQVRDRA
                     GKYAQLAADLVVDATGRSSRTPVWLAEWGYQPPTEERIEIGLGYATRTYRLRPGALG"
     gene            821..>1814
                     /locus_tag="VF788_18445"
     CDS             821..>1814
                     /locus_tag="VF788_18445"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013224869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HEX8936116.1"
                     /translation="MALRAPSPDVSDALQVLRRVFGYDSFREAQQEIIDHVTAGGDAL
                     VLMPTGGGKSLCYQIPALVRRGVGVVISPLIALMQDQVDALTALGVRAGFLNSTQDST
                     ARRAVESAFLAGELDLLYLAPERLRLDSTLSLLERGTISLFAIDEAHCVAQWGHDFRP
                     DYLGLSSLHELWPTVPRIALTATATKATHAEIASRLNLTGARHFVASFDRPNIQYRIV
                     SKAEPKRQLLELLRTEHSGDAGIVYCLSRSSVEKTAQFLLSSGIAALPYHAGLDARTR
                     AANQARFLREDGLVMVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRD"
BASE COUNT          284 a          638 c          578 g          314 t
ORIGIN      
        1 agccaagagc gcccgggcgc agccgatagg tccgggtggc gtagcccagc ccgatttcga
       61 tccgctcttc ggtcggtggt tggtagcccc actctgccaa ccaaaccggt gtccgggaac
      121 tgcgacccgt cgcatccacc acgagatccg ccgccagctg agcgtacttc cctgctcggt
      181 cacgtacctg cacgccggtc acccggcgct cgggcgtggt ggtcaggccg gcgatgtccg
      241 cgcgttccag gaacgtcaca ccgagtagcg ctgccacccg ggttcgaaca ctgctctcca
      301 aaaacggccg gctgacgatc aggcccagca cgccgccctt ggcctgccgg agccggtgcc
      361 cgagcagtat ccaccggcag tgcccgagca cgtcccccga gctggcacca gcctgcacga
      421 catccttggt gaagcccggg aacaactctt ccagtatcac agctccgcgc ggctgtaggg
      481 cgtgatggtg gcgtccctgt ggcacgccgc ggcggtgcgc gccgatctcg ggcatggcat
      541 cccggtcgat caccgtgacg ttgcggtagg catcggcgag cacccgagtg gccagcaacc
      601 cggccatact cgcgcccaac accaccgcgt ggtcaccggg ctggtgcggc atcgcgaatc
      661 tcctgcgctt caggcatgct cgctgtcggt catatcaacg cttatcctct taggtcctcc
      721 cgcggccacc atccgttacc tgggttggag cggcgttgga gccggattgg atccggcggc
      781 ggtgcagtcg gatgctgacg ccggtcatag gatcgccgag atggccctgc gcgcaccgag
      841 tcccgacgtg agcgatgcac tgcaagtgct ccgccgggtc ttcggctacg actccttccg
      901 ggaagcccag caggagatca tcgaccacgt caccgccggt ggtgatgcgc ttgtgctcat
      961 gccgaccggc ggtggcaagt cgctgtgcta ccagattccc gcgctggtac gccggggggt
     1021 gggcgtcgtc atctcaccgc tcatcgccct gatgcaggat caggtggacg ccctgaccgc
     1081 gctgggggtg cgggctgggt ttctcaactc cacccaggac tccaccgcgc ggcgcgcggt
     1141 ggagtccgcc ttcctcgccg gtgagctgga tctgctctac ctggccccgg aacgcctgcg
     1201 cctcgactcg acgctcagct tgctggagcg cggcacgatc tcgctgttcg ccatcgacga
     1261 ggcgcattgc gtggcccagt gggggcacga cttccggccc gactatctag gcctgtcctc
     1321 gctacacgag ctgtggccca ccgtgccccg catagcgctg acagcgacag ccaccaaggc
     1381 gacccacgcc gagatcgcgt cccggctgaa tctcaccggc gcccgtcatt tcgtggccag
     1441 cttcgatcga ccgaacatcc aatatcgcat cgtttcgaag gccgagccca agcgccagct
     1501 gctggagctg ctacgcaccg agcactccgg cgacgccggc atcgtgtact gcctgtcgcg
     1561 gtcatccgtg gagaagaccg cgcagttctt gctgagcagc gggattgcgg cattgccgta
     1621 tcacgccggg ctcgacgcgc gcacccgagc ggccaatcaa gcacggttcc tgcgcgagga
     1681 cggcttggtg atggtcgcca ccatcgcgtt cggtatgggc atcgacaagc ccgacgtccg
     1741 cttcgttgct catctcgatc tgcccaagtc cgtcgagggc tattaccagg agaccggccg
     1801 ggcagggcgg gatg
//
LOCUS       DASVXZ010000873         1512 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_608192, whole genome shotgun sequence.
ACCESSION   DASVXZ010000873 DASVXZ010000000
VERSION     DASVXZ010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608192"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..995)
                     /locus_tag="VF788_18450"
     CDS             complement(<1..995)
                     /locus_tag="VF788_18450"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8936117.1"
                     /translation="MLSTVIQRVTTPAGDPAWWVTNYDDVKALLSDPRLGRSHADPEH
                     APRVSQSAIFGGPMGHPSTEAVDHARTRRLLTPAFSARRMAKLRPRVAAIITELLDAM
                     ARQAHPVDLHESVSFPLPALVICELLGVPYADREEFRRWSDDAAHQTDAARSQAGLMQ
                     LWDYMNRLVKHKQAEPGDDVISELAAAAAADPKSTDDGIAGLCAGLLFAGHETTVTAI
                     DRGVLLLLTHPEQADELRHDPALIEPAVEEILRSWLPMRTSSTAERVGGLPRYANTDF
                     TFGGVRIRTGELVMLALHRANLDEQRFPEPDRFDVHRASNPHMTFGHGPRFCVGAP"
     gene            1058..>1512
                     /locus_tag="VF788_18455"
     CDS             1058..>1512
                     /locus_tag="VF788_18455"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX8936118.1"
                     /translation="MGGNTLTILMTATEPDFRVQAQEIVAHIRALRRDLLCASADDIA
                     RSGLTGPQVSVMAHLVMHGPTTVTELARELGISHSTVSGIVDRLQARSLVQRIQDDAD
                     RRYTRIRVTERVDHYVQNMEVGAFGRLATALGNATDEERRTIRDGLALLR"
BASE COUNT          256 a          498 c          514 g          244 t
ORIGIN      
        1 ggcgcgccaa cgcagaagcg cgggccatga ccaaaggtca tgtgcgggtt gctggcgcgg
       61 tgcacatcga accggtccgg ttcgggaaag cgctgctcat cgaggttggc ccggtgcaac
      121 gcgagcatga ccagctcacc ggtccggatg cggacgccac cgaaggtgaa gtcggtgttg
      181 gcgtaacggg gcagccctcc gacccgctca gccgtgctcg acgtgcgcat gggcagccat
      241 gagcggagaa tctcctcgac cgcgggttcg atgagagccg ggtcgtgccg cagctcgtct
      301 gcctgctcgg ggtgagtgag cagcaggagt actccgcgat cgatcgccgt cacagtggtc
      361 tcgtggccgg cgaacagcaa cccggcacac aaccccgcga taccgtcatc ggttgatttc
      421 gggtcagccg ctgccgctgc ggccagctca gagatcacgt cgtcgcccgg ctcggcctgc
      481 ttgtgcttca ccagcctgtt catgtagtcc caaagttgca tcagcccggc ttgcgagcgt
      541 gccgcgtcgg tctggtgcgc ggcgtcgtcg ctccagcggc ggaattcctc ccgatcggca
      601 taaggcacgc cgagcagctc gcagatcacc agcgcgggaa gcggaaatga caccgattca
      661 tgcaggtcaa ccgggtgagc ctggcgcgcc atggcgtcga gcaattccgt gatgatcgct
      721 gctacccggg ggcgcagctt cgccatccgc cgggcggaga aggctggcgt gagcaggcga
      781 cgggtccggg cgtgatccac cgcctcggtc gaggggtgac ccatcgggcc gccgaagatc
      841 gctgattggg acacgcgggg ggcatgctcc gggtcggcgt gcgagcggcc tagacgggga
      901 tcggagagca gcgccttcac gtcgtcgtag ttcgtgaccc accacgcggg gtctcccgcc
      961 ggcgtggtca cccgctggat caccgtgctc agcatgtcgc ctccgatact gcgtcgctta
     1021 agatgggtcg tgtgcgacgc gtcgcatgca acgtatcatg ggaggcaata cactgacgat
     1081 cctgatgacc gccaccgagc ccgacttccg agttcaagcg caggagatcg tggcccacat
     1141 ccgggcgctg cgccgtgatc tgctctgcgc gagcgccgat gacatcgcgc gcagcgggct
     1201 gaccggaccc caggtgagcg tcatggcaca cctggtgatg catggcccca ccacggtgac
     1261 cgaactcgct cgtgagctgg gcatcagcca cagcacggtc tccggcatcg tcgaccggct
     1321 gcaggcccgc agcctcgttc agcgaatcca ggatgacgcc gaccgccgct acacccgaat
     1381 ccgcgtcact gagcgggtag accattacgt ccagaacatg gaggtcggcg cgttcggccg
     1441 gctggccacc gcgttgggca acgccacgga cgaggaacgt cgcacgattc gcgacgggct
     1501 tgccctgctc cg
//
LOCUS       DASVXZ010000874         1925 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_787534, whole genome shotgun sequence.
ACCESSION   DASVXZ010000874 DASVXZ010000000
VERSION     DASVXZ010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_787534"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..373
                     /locus_tag="VF788_18460"
     CDS             <1..373
                     /locus_tag="VF788_18460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009074729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936119.1"
                     /translation="AGWMAALPLLVAGIGGGAVISPNVTLTLEWVPTRMGGAAAGALQ
                     TGQRIGSAIGTAMLAAVFYGVLAHSGDYRDAITAALLTGTGLVCLALLVAVLELRIRR
                     RRASLATPDEANVVQADVHRT"
     gene            complement(440..1180)
                     /locus_tag="VF788_18465"
     CDS             complement(440..1180)
                     /locus_tag="VF788_18465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936120.1"
                     /translation="MVVPVHPSSGLVAHFQGRRVAVLRPGNPPFTFGRGHDRTLRFGH
                     DAVHGGPDRHISRHVGSIRYSGGLWVVCNDSDSRPFDVIVRGVSNPLPPRTASDSHSR
                     WAVSPPGLEIRVGAPSGRYLLSISVDAPRPPIVEAPGHDDPCTVPLGELRDHDRLLLA
                     AKFLALPDPGEAVGNREAAQYASAARPHQEPVTAKAVEDCVGRWCKTLQQLGVTGISG
                     RDNINQLGRQLLAWGLLRQENRKLLRGA"
     gene            1306..>1925
                     /locus_tag="VF788_18470"
     CDS             1306..>1925
                     /locus_tag="VF788_18470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936121.1"
                     /translation="MQSSLQTIETSRAPLGQVVGRLRHRRIGKLITEWETTPGKLRVS
                     RMILVLGILLAGGIALFAANVRVETTRDIAEHLEPLNAQVTTLYRSLADADTTVAAGF
                     LAGRVEPSQVRARYDMDLDLATGSLAQAAIQGGAERVTADHITDITRQLPIYAGLVER
                     ARVNNRQGLTVGVAYLLLASELMQHRILPQAAELQRRQAARLDDAY"
BASE COUNT          321 a          634 c          659 g          311 t
ORIGIN      
        1 agcagggtgg atggcggcgc tgccgctgct cgtcgcgggc atcggcggtg gtgcggtgat
       61 ctcgccgaat gtcaccctga ccctggagtg ggtgcccacc cggatgggcg gtgccgcggc
      121 cggagcattg cagaccgggc agcggatcgg atcggcgatc ggaacggcca tgctggcagc
      181 ggtgttctac ggggtgctgg cacatagtgg tgattaccgc gacgccatca ccgccgcgct
      241 gctcaccggg acggggttgg tgtgcctggc tctgcttgtc gcagtgctgg aactccggat
      301 ccgtcgacgc cgggcgtcgc tcgcaacacc ggatgaggcc aacgtggtgc aggccgacgt
      361 gcatcgaacc tgaccgcccc ggacggtgtc agccgatgct gatcacgagg gcatcgtccg
      421 attggtgaag gatcggattt caggcgccgc ggagcagctt ccggttctcc tggcgtaaca
      481 atccccatgc gagtaattgg cggcccagct ggttgatgtt gtcgcgacca ctgatcccgg
      541 tgactccgag ttgctgcagc gtcttgcacc aacgaccgac gcagtcctcg acggctttcg
      601 cggtgaccgg ctcctggtgc ggccgtgcgg ctgaggcgta ctgggcagcc tcccgattgc
      661 cgaccgcttc gccgggatca ggtagcgcca gaaacttggc cgcgagcagc aaccggtcat
      721 gatccctcag ctcccccaac gggacggtgc agggatcgtc gtggcccgga gcctcgacga
      781 tcggcggccg cggcgcgtcg acgctgatgg agagcaggta ccggccggac ggcgcgccaa
      841 ccctgatctc cagaccgggg ggactgaccg cccatcggga gtgcgaatcc gatgcggttc
      901 gaggtggtag cgggttggat accccccgca cgatcacgtc gaacggacgg ctgtcgctgt
      961 cattgcacac cacccacaac cctccgctgt accgaatgga accgacgtgg cgtgagatgt
     1021 gccggtcagg cccaccgtgc acggcgtcgt ggccgaaccg caacgtgcgg tcgtgacccc
     1081 gtccgaaggt gaagggggga ttgcccgggc gcagcacggc cacccggcgg ccctgaaaat
     1141 gagccaccag cccgctcgac gggtgcaccg gcaccaccat tcacccacgt taacgtcgcg
     1201 ctggcggggc tgaccacctc cagcgcgggc tgccctctag ccacgcatgg tggcggaacg
     1261 ctctactgat ccgcggggag ggatcggcga gaaccggaga ctagcgtgca atcgagcctg
     1321 cagaccatcg agaccagccg ggcgccgctc ggtcaggtcg tgggacggtt gcgccaccgg
     1381 cgcattggca agttgatcac cgaatgggag accacgcctg gcaagcttcg ggtgagccgg
     1441 atgatccttg tgctcggaat actgcttgct gggggcattg ccctattcgc tgcgaacgtc
     1501 cgggtcgaga cgactcgcga catcgccgag cacctcgagc cactcaacgc ccaggtgacc
     1561 acgctgtacc gttcgctggc cgatgctgac accaccgtcg cggccggttt cctggccgga
     1621 cgcgtggagc ccagccaggt ccgtgcccgc tatgacatgg acctggatct agcgacgggc
     1681 agcctggcgc aggcggccat ccagggcggc gcggagcggg tgactgctga tcacatcact
     1741 gacatcactc ggcagctacc gatctacgcc ggtctcgtcg agcgggcccg ggtgaacaac
     1801 cggcaaggtc tgacggtcgg cgtggcctac ctcctcctcg cctcggagct gatgcagcat
     1861 cgaatccttc cccaggcagc agagttgcaa cggcggcagg cggcccgact tgacgacgcc
     1921 tacca
//
LOCUS       DASVXZ010000875         2190 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1400857, whole genome shotgun sequence.
ACCESSION   DASVXZ010000875 DASVXZ010000000
VERSION     DASVXZ010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1400857"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..871)
                     /locus_tag="VF788_18475"
     CDS             complement(<1..871)
                     /locus_tag="VF788_18475"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8936122.1"
                     /translation="MSRKQRWGRLGTVAEQDPGPVVQRIMLGSELRTLREAAKISTDA
                     AAVTLGWYRAKVSKVETGTVRLTAAELSSLLTLYKTDDATSERVQRLGEEARRKTTPA
                     RVPDWAKQYVSLEASATEIKLFFGDFIPGMLQTRDYARALLSTSVIVPPADVEQMAAN
                     REHRAERLRSGTPLLWVVLGEEALRRTVGGGQVQRGQLLRLRELAELPNVTVQVMPLS
                     GGAHAALGMSFVLLDFGHSRTVYIEGLTSADYLVRPQHTQAYNLAFDRLRVASLGDRE
                     SLAIINTIIDELEE"
     gene            1283..1549
                     /locus_tag="VF788_18480"
     CDS             1283..1549
                     /locus_tag="VF788_18480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936123.1"
                     /translation="MPATVIVVARSGHVWVSITPPFTWEAIMEPGKVDELIHTLGLAR
                     EDARQLASTRAAQPQCEGSAVVQGIAGGMAAPASKALGTPRTRP"
     gene            1546..1803
                     /locus_tag="VF788_18485"
     CDS             1546..1803
                     /locus_tag="VF788_18485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936124.1"
                     /translation="MNREDRELLVDLARLNGDMAALGLRIMEGSAGAAEQVHYAQRLI
                     AAGERLNRRARTVDAAADDGSMTTGRSITLPDNTMNPDWQS"
BASE COUNT          391 a          683 c          711 g          405 t
ORIGIN      
        1 actcctctaa ctcatcgata atcgtgttga tgatcgccag tgactcccga tcccccaggg
       61 acgcgacccg taagcggtcg aaggcgaggt tgtaggcctg ggtgtgctgc gggcggacga
      121 ggtagtcagc actggtaagg ccctcgatgt agaccgtccg ggaatggccg aagtcaagca
      181 ggacgaacga catgcccagt gcggcgtgcg caccaccgga gagtggcatg acctgcacgg
      241 tgacgttggg caattcggct agttcccgca accgcagcag ctgcccgcgc tggacctgcc
      301 cgccaccgac cgtgcgccgc agagcctcct caccgagcac gacccacagc agcggcgtgc
      361 cgctgcgcaa gcgttccgcc cggtgttccc ggttggcggc catctgttcc acgtcggctg
      421 gcggcacgat gacggaagtc gacaacagtg ctcgggcata gtcgcgggtc tggagcatgc
      481 caggaatgaa gtcgccgaag aacagcttga tctcggtggc gctggcttcg aggctgacgt
      541 actgcttggc ccagtccggc acgcgggccg gcgtggtctt ccgcctggct tcctctccga
      601 gccgctgcac ccgctcgctg gtggcatcgt cggtcttata gagcgtaagc agggaagaca
      661 gctcggcagc ggtcagcctg accgtgccgg tctcgacctt gctgaccttg gcgcggtacc
      721 agcccaatgt gacagcggcg gcatcggtgc tgatcttggc ggcttcacgt agggtccgca
      781 gctcactgcc gagcatgatg cgctggacga ctggtcccgg atcttgctcg gccacggtgc
      841 caagtctgcc ccaccgttgc tttctcgaca tgccatacct cccctggacg gaatctggac
      901 actcaagtat tcccatcggg aatcctggtg tagttcctag tcaacactga gtgtccggat
      961 ccggcactcc atgcccgccc cttgggaaag gatcagagat ggcccgcgcc gcgcttgccc
     1021 tcacgggcgt cggtctcccg ccttggcctg ccgacccccc gcgaggccca tgtcgctgcc
     1081 ggacgccgcg ccgtagcgcg cgaaagtgtc gttgcgttgg ctgttctctt ctctgcctgg
     1141 ggccccactc cggactacta gggaacgcct cgtgactaag ccctttcccc tgccgtctca
     1201 ggctcaaggg cccactgggc ggcaggctgc aactccagat tcacctgtgc accgcagagt
     1261 tgctgtcaaa ggcagcggtg gggtgcccgc gaccgtaatt gtggtagccc ggtcgggaca
     1321 tgtctgggtg tctatcacgc caccttttac ctgggaggcg atcatggaac ccggaaaggt
     1381 tgatgagctg atccacacgc tcgggctggc ccgggaggac gcgaggcagt tggcctccac
     1441 ccgtgctgcg cagccacagt gcgaaggcag tgcggttgta cagggcatcg caggcgggat
     1501 ggcggcacct gcgagcaagg ccttgggtac gccgaggact cggccgtgaa cagggaagac
     1561 cgtgagctgc tggtcgacct ggcccggctc aatggggata tggcggcgct cggcctgcgc
     1621 atcatggagg gaagtgccgg cgctgccgaa caggtgcact atgcacagcg gctcattgca
     1681 gcaggggaac ggctgaaccg ccgggcaagg accgtagatg cagccgccga cgacggcagt
     1741 atgaccacgg ggagatcgat tacccttccg gataatacga tgaatccaga ttggcaatcg
     1801 tgaatgatcg ctccgacttc agcggtgagg taggccgtcg gcgcgagtca ttacgatctg
     1861 gaggtcggag gcgcgcacga acgcgaaaga gctgagctgg cggccatcat cctctacgag
     1921 tacgaagtgc atccagccgt gactgaacgt gatatccctg tcttcctcgc tgacatgcgt
     1981 gccaataact tgatcgacaa ctgagattag gctggcaccg catccgcaag gcgactgtgc
     2041 tgccgctgga agatggagac agccacccat atgagtattt cgaaacgtcg ccagctggcc
     2101 cgtcgttcag ttttcgtggc tgcggtgtgg ctggtggcca cctccatcgg cctcggcgtc
     2161 gcagcgaaga catcagtcgg ccctgtggtg
//
LOCUS       DASVXZ010000876         4162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_787830, whole genome shotgun sequence.
ACCESSION   DASVXZ010000876 DASVXZ010000000
VERSION     DASVXZ010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_787830"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(274..1083)
                     /locus_tag="VF788_18490"
     CDS             complement(274..1083)
                     /locus_tag="VF788_18490"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family glutamic-type intramembrane
                     protease"
                     /protein_id="HEX8936125.1"
                     /translation="MTAERYGIAEKVAPRSPHAWRWAWLPVLLVGIGLFIAVQQALVI
                     TGNPTLVPTLLVLGTLVIPVSFVVYVDGRNPAYDLPLSVLLSCALLGGVLGAAVASVL
                     EFDTMRRSGALPALSIGLIEEAAKLLVPIAILIFTRYRGDIADGLLIGVAVGMGFAVL
                     EILGYGFVILLATGGDLSDAEGVLLLRAALSPAAHAAWTGLAAAALWWGHSQRWRLRG
                     LAAAAGTFLLVVVLHTFWVAAHSWYGYLIIGIISLALLLRQVHRNVLSSRA"
     gene            1390..3969
                     /locus_tag="VF788_18495"
     CDS             1390..3969
                     /locus_tag="VF788_18495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylate--amine ligase/circularly permuted
                     type 2 ATP-grasp protein"
                     /protein_id="HEX8936126.1"
                     /translation="MTSRIGVEEEFHLVDLQTRQATPAADDMLTQLDGDSFAPELQRS
                     LVEANTLPCESLDELRAELCRLRRRLNEVADPLGLGVVAAGTVPLVDLRGTDISAGAR
                     YERMQHEYQLLVREQHICGTQVHVDVPDRDIAVAVVQHVALHLPTFLALSTSSPYWRG
                     SDSGYASYRCMVWQRWPTAGPPGPMCTAADYDTMVADLVTSGTISDPGMVYFDIRPSA
                     HLPTVELRICDACPVVDDVVLIAGLFRALVQRARGWVTEGKPFPQTRHELLRAATWRA
                     ARSGLEGDLVDLTHPSGPTLVPPSLLVERLVNDLRPELDAFGDWKQVYELAQRALAAG
                     SSAARQRRMYGRRGELTDVVDGLLAHTRGGTLDRDPPTAIPATPALLEGYLGVDRLGA
                     NRLSASKRSASYDESVGTDGRVLPHYGWMFRALGRLGARGMTAAISALHTEQRARGVT
                     FRVADDAPDRLLPLDLVPRIVTAEDWSTLTAGLIQRVRALEAFLHDAYRRQEIIRDGV
                     MPASVITSAPGWSRTGELYSQYTVRAAVSGIDLVRDSAEGWLVLEDNLRVPSGMGYAI
                     VSRRLVRSVLPDLEPPAGVVPLEGVPGLLRKTLLAAAALENGDDAIALLSAGPIDSAF
                     YEHRLLAEQMAVPLVTPGDLTITDSGVYANGQRLRVLYRRLDEQTLLDATGADGRPIG
                     PAICAAVAEGRVGLLNAMGNGVADDKRVYAYVPDMITYYLGEQALLANVPTYPCADPH
                     HLAEVLDRLDELVLKPVDGYGGHGIVIGADADRSELAELADSIRAKPEDWVAQDLVSL
                     STHPTFAGDRLEPRAIDLRAFVLLGERAEVVPAALTRVAPNGSMIVNSARGGGAKDTW
                     ILR"
     gene            3983..>4162
                     /locus_tag="VF788_18500"
     CDS             3983..>4162
                     /locus_tag="VF788_18500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutaminylglutamine amidotransferase"
                     /protein_id="HEX8936127.1"
                     /translation="MCGIAGEIRFDGTPADVAAVSTMAASLHRRGPDGWGIHAGRHAA
                     LGHRRLKIIDLSDRAA"
BASE COUNT          745 a         1371 c         1387 g          659 t
ORIGIN      
        1 gaccgcagtg gtctgagccg gctgctcgcg ccccctcgcc accttgccat ccccacgacc
       61 gaggcaggcc cggcatgagc cggtcagaaa ccattgttgt cgtagggcat gagcgcgtaa
      121 cgcaaggtac cagcgcaccg cgatcatgat cacatccggc gagaattgga acccagctcg
      181 acgagcgggg gatggcacag ttcttcacga gtgaggcgct tgccgttcag tgccgccgct
      241 atcctcttgg cggccaggta cacggtgtca ccttcaggca cggctactca ggacgttgcg
      301 gtgaacttgg cggagtagca aagcgagact gatgatcccg atgatcaggt agccgtacca
      361 ggaatgggcg gcaacccaga aggtgtgcag caccacgacg agcaggaagg ttccggccgc
      421 agcggcgagc ccgcgtagtc gccatcgttg ggagtgtccc caccacagcg ccgcggcggc
      481 taacccggtc caggccgcat gcgcggcggg gctcagcgcc gcccgcagca ggagtacgcc
      541 ttccgcgtcg ctcaggtcac caccggtagc gagcaggatg acgaatccat aacccaagat
      601 ctccaggacg gcgaagccca tgcccaccgc gacgccgatg agcaacccgt cggcaatatc
      661 tccccggtac cgagtgaaga tcagaatagc gatcggcacc agcagtttgg cggcctcttc
      721 gatcagcccg atagacagcg ccggcagcgc accagaccgt cgcatggtgt cgaattccag
      781 cacgctggcg actgcggcgc ccagcacgcc acccagcaga gcgcagctca acaacacgct
      841 cagtggtagg tcataggccg ggttccggcc atcgacatag accacgaagc tcaccggaat
      901 caccagcgtt cccaacacca ggagcgtggg cacgagagtc ggatttccgg tgatcaccag
      961 agcctgctgg acggcgatga acagcccgat ccccaccagc aacaccggta gccacgccca
     1021 ccgccaagcg tgaggcgaac ggggggcaac cttctcagcg atcccatacc gctcggcggt
     1081 catgaccacc ttctacccca ccggagcgct ccaggcacca ccattgcccg ttacgccccg
     1141 actgtcgttt tacgcaggcg ggttggttca cagaaccgtc acctggtgca agtaggcgaa
     1201 atcagtgatg tccccgtccc ggcatcgagg aagggccatt gcggcactag gtggcgacgc
     1261 aggaggaatc tcgaggccag atccgcagat ggcggcagat ctttatggcg gcgacggaac
     1321 gttaccgggc ccaggcacgt aaaggagccg taacaacaag cgcctagcgt aacggccatg
     1381 ggcaatttcg tgacttcacg gatcggtgtg gaggaggagt tccacctcgt tgacctccag
     1441 accaggcaag cgactccggc ggccgatgac atgctcaccc agctggacgg tgactcgttt
     1501 gcaccggagc tacagcgctc cctggtcgag gcgaacacgt tgccctgcga gagcctcgat
     1561 gaactgcgcg ccgaactttg ccggttgcgc cggagattga acgaggtcgc cgatcccctc
     1621 gggctgggtg tggtagccgc gggaacggtt ccgctggtcg acctgcgcgg caccgatatc
     1681 tcggccggtg cccgctacga gcggatgcag cacgagtacc agctcctggt ccgcgagcaa
     1741 cacatctgcg gaacccaagt gcacgtcgac gtgcctgatc gggatatcgc ggtcgcggtc
     1801 gtgcagcacg tggcgctgca tttaccgacc ttcctcgcgc tgtcgacgag ctcgccgtac
     1861 tggcgcgggt cagacagcgg ctatgccagc taccgctgca tggtctggca gcgctggccg
     1921 accgcgggcc caccgggacc gatgtgcacc gccgctgact acgacaccat ggtggccgac
     1981 ctggtcacct cgggaaccat cagcgaccct gggatggttt atttcgacat ccgcccgtca
     2041 gcgcatctgc ccacagttga gctgcggatc tgtgatgcct gcccggtggt cgacgacgtg
     2101 gtgctcatcg caggcctgtt ccgggcgctg gtgcaacggg cccgcgggtg ggtcacggag
     2161 ggcaaaccgt tcccccagac ccgccatgag ctgttgcgag cggcgacgtg gcgggcggcc
     2221 cgatccgggc tggagggtga cctggtcgac ctcacccatc cgtcagggcc caccctggtt
     2281 ccgccctcgc tactcgtcga acggctggtg aacgacctgc gacccgagct tgatgccttc
     2341 ggcgactgga agcaggtata tgaactggcc cagcgtgccc ttgccgcggg cagctccgcg
     2401 gcccggcagc gccgcatgta tggccgccgc ggcgagctca ccgatgtggt cgacgggctg
     2461 ctggcgcaca cccgcggtgg cacactggac cgcgatccgc caaccgcgat cccggcgacg
     2521 ccagcactgc tcgagggcta tctcggtgtc gacagactcg gtgccaacag gctcagtgcc
     2581 agcaaacgca gtgccagcta cgacgagtca gtgggaacag acggtcgggt gctaccgcac
     2641 tacggctgga tgttccgggc gctgggccgg ctgggagcta ggggaatgac ggcggcgata
     2701 tctgcactgc acaccgagca gcgggcgcgg ggtgtgacct tccgcgtggc cgacgatgca
     2761 ccggaccggc tgctcccgct ggatctggtg ccgcgcatcg tgacagccga ggactggtcg
     2821 acgctgaccg caggtctcat ccagcgggtg cgagcgctgg aggccttttt gcatgatgcc
     2881 taccgccgtc aggagatcat ccgggatggt gtgatgccgg cgtcggtgat caccagcgcg
     2941 cccggttgga gccgcaccgg ggagctgtac agccaataca ccgtgcgcgc tgcggtcagc
     3001 gggatcgacc tggtgcgaga cagcgccgag ggctggctcg tcctcgagga caaccttcgg
     3061 gtgccctccg gtatgggcta cgccatcgtc agccggcgac tcgttcgcag cgtgttgccc
     3121 gatttggagc cacccgccgg tgtggtgccg ctggaaggtg tgcccggctt gctgcgcaag
     3181 acactgctgg ccgcggccgc gctggaaaat ggcgatgacg cgatcgcgct gctcagtgcc
     3241 ggccccatcg actcggcctt ctacgaacac cgcctgctgg cggagcagat ggctgtgccg
     3301 ctggtcactc ctggggacct cacgatcacc gacagtggag tttacgccaa tggtcagcgc
     3361 ctgcgcgtgc tctaccgtcg gctcgacgag cagactttgc tcgacgccac cggcgcggac
     3421 ggccggccca taggaccggc gatctgcgcg gccgtggccg agggccgggt gggcttgctc
     3481 aacgcgatgg gcaatggagt ggccgatgac aaaagggtgt acgcgtatgt gccggacatg
     3541 atcacttact acctgggtga gcaggcgcta ctcgccaacg tacccaccta cccgtgtgcc
     3601 gacccgcacc acctcgccga agtgcttgac cggctcgacg agctggtgct caagccggtg
     3661 gacggctacg gcgggcacgg catcgtgatc ggcgcggacg ccgatcgatc cgagctggcc
     3721 gagctcgccg actccatccg ggcgaagcct gaggactggg tcgcccagga cctggtatcg
     3781 ctgtccactc atcccacctt cgccggagat cggctggagc cgagggcgat cgacctacga
     3841 gcattcgtcc tgctgggaga gcgggccgag gtggtaccgg ccgccctgac ccgagtcgca
     3901 ccgaacggca gcatgatcgt caattccgca cgcggcggag gcgcgaagga cacctggatc
     3961 ttgcggtgag aggagcttgc tgatgtgtgg catcgcgggc gagatcagat tcgacggaac
     4021 accggccgac gtcgcggcgg tcagcacgat ggctgcgagc ctgcatcgtc gggggccgga
     4081 tggctggggc atccacgccg gcaggcacgc cgcgctcggc caccggcggc tgaagatcat
     4141 cgatctgtcg gaccgggccg cg
//
LOCUS       DASVXZ010000877         2987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1141047, whole genome shotgun sequence.
ACCESSION   DASVXZ010000877 DASVXZ010000000
VERSION     DASVXZ010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141047"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VF788_18505"
     CDS             <1..352
                     /locus_tag="VF788_18505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003054689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fused response regulator/thioredoxin-disulfide
                     reductase"
                     /protein_id="HEX8936128.1"
                     /translation="THLERLTLRHTRSGATDTVLTGHVFVFIGAAPRTDWLDGVVTRD
                     ARGFIRTGPDLIIDGRRPAGWVLDRDPYYLESSLPGVFVAGDVRAESVKRVASAVGEG
                     AMAVTLVHRYLEDQ"
     gene            349..1755
                     /locus_tag="VF788_18510"
     CDS             349..1755
                     /locus_tag="VF788_18510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8936129.1"
                     /translation="MTNSELRELFLFTDLTDTQLDWICEHSETFDVGDGEIVVSEGEQ
                     ARCFYVLLAGTLQMTRLVAGDPVEITRTDQRGVYFGATQFYLGDQVDQTYGASVRTLS
                     DCRLLALPSRDFNEVFRRWYPMAVHLLQGMFVGIANSNALVGQRERLLALGKLSAGLT
                     HELNNPAAAASRAADTLRERLAGMRHKLALLAEGRLDRDALKTLTVLQERFVAAGRSA
                     PALTALQAGDLEDELADWLDDHDVTGGWELAPVFVAGGLRVADLEEVAETAPPESLEG
                     ALRWLAYTVDTENLVREIGDATTRITALVGAAKQYSQLDRAPHQDIDLHDGLDATLVM
                     LARKLGEGVRVVKDYDRALPTIPAYPAELNQVWTNLIDNAADAMEGTGTLTVRTARDG
                     EFALVEIGDTGPGVAPEVAKRIFEPFFTTKPVGQGTGLGLDVSWRVVVSRHHGDLQVQ
                     SQPGDTRFQVRLPLHESP"
     gene            complement(1815..>2987)
                     /locus_tag="VF788_18515"
     CDS             complement(1815..>2987)
                     /locus_tag="VF788_18515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HEX8936130.1"
                     /translation="YGSWAIWRDADSAAVQAKLDEGAPYVVRFRAPDDAAGKRVRFTD
                     AIRGTLEHEANRNDTVILKSSDQFRRLPTYHFAHAVDDHLMRITLVIRGEEWISSVPL
                     HLQLFDALGFEPITYAHIAPLMKQISGGKRKLSKRADPEASVDFYIEAGYPAEAVLYY
                     LRGLANGRLAELPLPVALATPIRLDQCGVAGPLVDLVKLEDISADHISTLPGHQVLEA
                     VRTWAGQFDAELATVLDNERDLALRALAVEREGIANPRKDLRKWSDFRAAYGFFFPQL
                     FVPLSGPTDERLSSLGVDPAITASFAHDFANGYQHLDDPQEWFNQIRELAAKHGFAPN
                     AKEYKKNPEAYPGSIREASQLIRVALTGSTRSPDLHAVTQALGAPEVLRRVHALAG"
BASE COUNT          513 a          946 c         1008 g          520 t
ORIGIN      
        1 aactcacctg gaacggctca ccttgcgcca cacccgttcc ggcgccaccg acaccgtgct
       61 caccggccat gtcttcgtgt tcatcggtgc cgcgccgcgg accgactggc ttgacggcgt
      121 cgtgaccagg gatgcccgcg ggttcatccg gaccggccct gatctgatca tcgatgggcg
      181 ccgcccagca gggtgggtat tggatcgcga tccctactac ctcgagtcca gcctgcctgg
      241 ggtgttcgtg gccggcgacg tgcgcgccga gtcggtcaaa cgggtcgcct ccgcagtcgg
      301 tgaaggcgcc atggccgtca cgctggtgca ccgctacctg gaggatcagt gaccaactcg
      361 gagctgcgcg agctgttcct gttcaccgac ctgaccgaca cccagctgga ttggatctgc
      421 gagcacagcg agacgttcga cgtcggcgac ggcgagatcg tggtctccga gggcgagcag
      481 gccaggtgct tctatgtgct cctggccgga acgctgcaga tgacccggct ggtcgccgga
      541 gacccggtgg agatcacccg caccgaccag cgcggggttt acttcggagc cacccagttc
      601 tacctcggcg accaagtcga ccagacctac ggggcttccg tgcggacgct cagtgactgc
      661 cggctgctcg ccttgcccag ccgagacttc aatgaggtgt tccgccgctg gtacccgatg
      721 gcggtgcacc tgttacaggg catgttcgtc ggcatcgcca actccaatgc gctggtcggc
      781 caacgcgagc gactgctggc cctgggcaag ctttctgccg gcctgaccca tgaactgaac
      841 aatcccgccg ccgcggctag ccgagcggct gacaccttgc gcgagcggct ggctgggatg
      901 cggcacaagc tggcgctgct cgcagagggc cggctggatc gcgacgcctt gaagaccttg
      961 accgtcctgc aagagcggtt cgtggcggcc ggtcgcagcg cgccggcatt gaccgcgctg
     1021 caggccggtg atctggagga tgagctcgct gactggctcg acgaccacga cgtgaccggg
     1081 gggtgggagc ttgcgccggt gttcgtcgca ggtggactgc gggtggccga tctggaggag
     1141 gttgccgaga ccgcgccacc cgaatcgctg gagggtgcgt tgcgatggct ggcttacacc
     1201 gtggacaccg agaatctggt ccgggagatc ggggacgcca ccactcggat caccgcgctg
     1261 gttggtgccg ccaagcagta ctcgcagctc gaccgcgccc cgcaccagga cattgacctg
     1321 cacgacggcc tggacgccac cctggtcatg ctcgcccgca agctcggcga gggcgtccgc
     1381 gtcgtcaagg actatgaccg cgcgctgcct accatccccg cctacccggc agagctcaac
     1441 caggtgtgga ccaacctcat cgacaatgcc gccgacgcca tggaagggac gggcacgctg
     1501 accgtgcgta ccgcccgcga cggcgaattc gccctggtcg agatcggcga caccggaccg
     1561 ggtgtggctc cggaggtcgc caagcgcatc ttcgagccgt tcttcaccac caagccggtc
     1621 ggccagggca ccggactcgg cctcgacgtc agctggcgag ttgtggtcag ccgccaccac
     1681 ggcgacctgc aggtgcaatc ccaacccggt gacacccgct tccaggttcg cctacctctc
     1741 catgaaagcc cttaaacgag ccacctggat gcttgtcgct gccgtaaacc gcccgaagag
     1801 cagtatgcgc acggtcagcc ggccagtgcg tgcacccggc gaagcacttc tggagcgccg
     1861 agtgcctggg tgacggcatg gagatcggga ctgcgggtgg aaccggtaag ggcgacgcgg
     1921 atgagctggg atgcctcgcg gatcgagccg ggataggcct cggggttttt cttgtattct
     1981 ttggcgttgg gcgcgaagcc gtgctttgcg gcgagttcgc ggatctggtt gaaccattcc
     2041 tgagggtcgt ccagatgctg gtagccgttg gcgaagtcat gggcgaagct cgcggtgata
     2101 gcgggatcca cgccgagtga gctgagccgt tcgtcggtgg ggcccgacag cgggacgaac
     2161 agttgcggaa agaaaaagcc gtaggcggcc cggaagtccg accacttgcg caggtccttg
     2221 cgtggattag cgatcccttc gcgttccacg gccagcgcac gcagggccag atcgcgctca
     2281 ttgtccagga cagtggccag ttcggcgtcg aattggccag cccaggtgcg gacggcctcc
     2341 aggacctggt gtccgggcag ggtggaaatg tggtccgcgc tgatgtcctc aagcttgacc
     2401 aggtccacca gcggcccggc gacgccacac tggtccagcc ggatgggagt ggcgagtgcc
     2461 acggggagtg ggagttcggc gagtcgccca ttcgccagac ccctcaagta gtaaagaacc
     2521 gcctcggcgg ggtagccggc ttcgatgtag aaatctacgc tggcttcagg gtcggcgcgc
     2581 ttggataatt tgcgtttgcc gccggagatc tgcttcatca gcggagcgat gtgtgcatag
     2641 gtgatcggct cgaagcccag cgcgtcgaac agttgcagat gaagcggaac tgaggagatc
     2701 cattcctcgc cgcggataac cagtgtgatc cgcatcaggt gatcatccac ggcgtgcgcg
     2761 aaatggtagg tcggtagccg ccggaactgg tcagatgatt tcaagatgac ggtatcgttg
     2821 cgattagcct cgtgctccaa cgtgccacgg atcgcgtcgg tgaaccggac ccgctttccg
     2881 gcggcgtcat cgggagcgcg gaagcgcacc acatacgggg caccttcgtc gagtttagcc
     2941 tgcacagccg cggaatcggc gtcacgccag atggcccatg atccgta
//
LOCUS       DASVXZ010000878         2450 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1141221, whole genome shotgun sequence.
ACCESSION   DASVXZ010000878 DASVXZ010000000
VERSION     DASVXZ010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141221"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..966)
                     /gene="pqqE"
                     /locus_tag="VF788_18520"
     CDS             complement(<1..966)
                     /gene="pqqE"
                     /locus_tag="VF788_18520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018149 - peptide cross-linking [Evidence
                     IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqE"
                     /protein_id="HEX8936131.1"
                     /translation="MVDRPLGLLAELTHRCPLHCPYCSNPVELTARSAEMSTEDWLSV
                     LSQARELGVLQVHLSGGEPLLRPDLPALVAHAHGLGCYVNLVTSGLGLTASRLDDLVS
                     RGLAHVQLSAQGATRERSDLLAGAKAFDRKLAAASLVKEAGLPLSLNVVLHRQNHDQL
                     AGIIELAERMGADRLELANTQYYGWALRNRSALMPTPEQLAAAEPVVRAAVSRLRGTM
                     EIVYVVADYYEPYPKPCMYGWGARQLTVAPNGDVLPCPAASVITTLPVENVLSRPLRE
                     IWYSSESFNAYRGEEWMREPCRTCDRRTVDFGGCRCQAFQLLGDAA"
     gene            complement(956..1252)
                     /gene="pqqD"
                     /locus_tag="VF788_18525"
     CDS             complement(956..1252)
                     /gene="pqqD"
                     /locus_tag="VF788_18525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003079638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis peptide
                     chaperone PqqD"
                     /protein_id="HEX8936132.1"
                     /translation="MADEGIAAALSLADRPQLRRGVRAGIDPLSGDKVLLFPEGVLFL
                     NETAAAVIQECDGSRSVTEVVQAIGEVYDNVALEDVITLLQELITQHLLVAHRG"
     gene            complement(1255..1956)
                     /gene="pqqC"
                     /locus_tag="VF788_18530"
     CDS             complement(1255..1956)
                     /gene="pqqC"
                     /locus_tag="VF788_18530"
                     /EC_number="1.3.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016336983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline-quinone synthase PqqC"
                     /protein_id="HEX8936133.1"
                     /translation="MGEDRPVLNSEEFENMLRGAERSYWDKHPFHQRMDAGELDPGDL
                     RAWVANRWYYQRSLPQKDAAIVANCPLPEIRRQWLPRISYHDGTSDGDGGCARWLLLA
                     DAVGLSREEVTDERHVLPGVRFAVDSYVTFARTRPWVEGIASSLTELFAPEAMATRVA
                     AFHRYYPWIDHEALSYFDVRIPQAREECADALGIVLAHCTSRESQDAAARALEFKTDV
                     LWSMLDTIDHSRPAL"
     gene            complement(1972..>2450)
                     /locus_tag="VF788_18535"
     CDS             complement(1972..>2450)
                     /locus_tag="VF788_18535"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8936134.1"
                     /translation="CEPFDATTGRLPRYARARYPASSALLPGSMSSGVVIGYRITDGR
                     TGRSAVFLPSVAALDERLLEQLRGTDLLLVDGTFWTDDELHQNRRGTATARSMGHLPV
                     NDAEGSLRLLRQLTDTHIVYTHLNNTNPMLVEDAPERAYLADAGATVAHDGAEYEL"
BASE COUNT          436 a          835 c          769 g          410 t
ORIGIN      
        1 ggccgcgtcg ccgagcagct ggaacgcctg gcatcggcag ccgccgaagt ccaccgtgcg
       61 gcggtcgcag gtgcggcacg gttcccgcat ccactcctcg ccccggtagg cgttgaacga
      121 ctccgatgag taccagatct cccgcagcgg acgggacagc acgttctcca ccggcagcgt
      181 ggtgatcacc gacgcggccg ggcacggcag cacgtccccg ttcggcgcga ccgtcagctg
      241 ccgtgcgccc cagccgtaca tgcacggctt cgggtacggc tcgtagtagt cggcgacgac
      301 gtagacgatc tccatcgtgc cccgcaaccg cgagaccgcc gcccgcacaa ccggttccgc
      361 cgcggcgagc tgctcgggag tcggcatcag cgccgaccgg ttgcgcaacg cccagccgta
      421 gtactgcgtg ttcgccagtt ccagccggtc cgcgcccatc cgctcggcca gctcgatgat
      481 gcctgccagc tggtcgtggt tctgccggtg cagcaccacg ttcagcgaca acggcagccc
      541 ggcctccttc accaaggaag ccgcggcaag cttccggtcg aaggccttcg cgccggccag
      601 cagatcggaa cgctcccggg tcgcgccctg cgccgacagc tggacgtgcg ccagcccgcg
      661 cgaaacgagg tcgtcgagcc gcgaagccgt caggccgagc cccgaagtga cgaggttgac
      721 gtagcagccg agcccatgcg cgtgcgcgac cagcgcaggc aggtccggcc gcagcaacgg
      781 ctcgccgccg gacaggtgca cctgcagcac gcccagttcc cgagcctggg acagcaccga
      841 caaccagtcc tcagtggaca tctcggcgga gcgagcggtc agttccaccg ggttggagca
      901 ataaggacag tgcagcgggc agcggtgggt cagctcggcc agcaggccca gcggcctatc
      961 cacgatgcgc cactagcaga tgctgagtga tcagctcttg cagcagcgtt atcacgtcct
     1021 cgagcgccac gttgtcgtac acctcgccga tcgcctgcac cacctcggtg acgctgcggc
     1081 tgccgtcgca ctcctggatg acggcagccg cggtctcatt caggaagagc acaccttcgg
     1141 ggaacagtag gaccttgtcg ccgctgagtg ggtcgatgcc ggcgcgcacc ccgcggcgca
     1201 actgtggccg gtcggcgagg gacagcgctg ccgctatccc ttcgtcagcc atgatcacag
     1261 cgccggacga gagtgatcga tcgtgtccag catgctccac agcacgtcag tcttgaactc
     1321 gagcgctcgt gcggccgcgt cctgactttc tctcgacgtg cagtgcgcca gcacaatccc
     1381 caacgcgtcg gcgcattctt ctcgcgcttg cggtattcga acatcgaagt agctcagggc
     1441 ctcgtggtca atccacgggt agtatcgatg aaatgcagcc acccgggtgg ccatcgcttc
     1501 tggagcgaat agctcggtca gtgaggacgc gatgccctcg acccagggtc gcgttcgagc
     1561 gaaggtgacg taggagtcga ctgcaaaccg cacccccggt aatacatgtc gttcatcggt
     1621 aacttcctcc cggctcaatc cgaccgcatc tgccaataac aaccatcgag cgcagccacc
     1681 gtcaccgtct gaggtaccgt cgtggtaaga gattcgcggc agccactgcc gccggatctc
     1741 tggtaatggg cagttagcga cgatggcggc gtccttctgc ggcaagcttc gctggtaata
     1801 ccatcggtta gccacccagg cccgcaggtc accaggatcg agctcaccgg cgtccattcg
     1861 ctgatgaaag ggatgcttgt cccaatagct acgctcggca ccgcgcagca tgttctcgaa
     1921 ttcctcacta ttcaacaccg gtcggtcttc gcccatcgaa agccccctgc tctacagctc
     1981 atattcggcg ccgtcgtgcg ctacggttgc gccggcgtcg gctagatacg ccctttcggg
     2041 tgcatcttcg actagcatcg gattagtgtt attgagatgg gtatacacga tgtgggtatc
     2101 ggttagctgg cgaagcagcc gcaggctccc ttcggcatcg ttgaccggca ggtgccccat
     2161 cgatcgggcg gtggcggtgc cgcgccggtt ctgatgcagc tcgtcatcgg tccagaatgt
     2221 gccgtccacg agaaggagat ccgtgccgcg gagctgctca agcaggcgct cgtcgagcgc
     2281 cgccaccgac ggcaggaaca ctgcggaacg accagtgcgc ccgtcggtga tccggtaacc
     2341 gatcaccacg cctgagctca ttgaacccgg gagcagcgcg ctgctggccg ggtaacgggc
     2401 gcgggcataa cggggcaacc ggccggtggt cgcgtcaaaa ggctcacacc
//
LOCUS       DASVXZ010000879         2152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1312503, whole genome shotgun sequence.
ACCESSION   DASVXZ010000879 DASVXZ010000000
VERSION     DASVXZ010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1312503"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1732)
                     /locus_tag="VF788_18540"
     CDS             complement(<1..1732)
                     /locus_tag="VF788_18540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020638640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0015969 - guanosine tetraphosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RelA/SpoT family protein"
                     /protein_id="HEX8936135.1"
                     /translation="MVGSDAATVPQRLPSATRRVRARLARRITAQRPGPVRQVLEPLA
                     AVHRELHPKADLALLQRAYDVAEEKHSHQKRKSGDPYITHPLAVSTILAELGMDTTTL
                     VAALLHDTVEDTDYSLGHLSVDFGEVVAHLVDGVTKLDKVKLGAAAEAETIRKMVIAM
                     ARDPRVLVIKLADRLHNMRTMRFLPPEQQARKARETLEVFAPLAHRLGMATIKWELED
                     LSFAILHPKKYDEIVRLVANRAPSRDTYLRTVIDEVSAQLGGSRIVATVEGRPKHYYS
                     IYQKMIVRGRDFDDIHDLVGVRIMVEDDRDCYAAIGVVHSVWQPMPGRFKDYVAQPRF
                     GVYQSLHTTVIGPDGKPLEVQIRTRSMHRTAEYGIAAHWRYKETRGTHNGAANGTLDV
                     DEMAWMRQLLDWQREAADPSEFLESLRYDLATREIFVFTPKGEVITLPTGSTPVDFAY
                     AVHTEVGNRCIGARVNGQLVALERQLENGEVVEIFTSKAGGAGPSRDWLSFVASPRAR
                     AKIRQWFAKERREEAIESGKSAIAKELRRVGLPVQRLVSAESMVAVSRELRYPDVSGL
                     YAAVGEHHASP"
     gene            complement(1897..>2152)
                     /locus_tag="VF788_18545"
     CDS             complement(1897..>2152)
                     /locus_tag="VF788_18545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX8936136.1"
                     /translation="SDRESYALEYGIASLELAHSVLRPGQRALVVDDVLATGGTAAAT
                     CALVERAGASVSGIAVLLEIASLGGRDRLRGRPVHALLTV"
BASE COUNT          375 a          722 c          675 g          380 t
ORIGIN      
        1 gaggcgaggc gtggtgttca ccgaccgcgg cgtagagccc gctgacgtcg ggatagcgca
       61 gttcccggga gaccgcgacc atcgactcgg cagagaccaa ccgctgcacc ggtagcccaa
      121 cccggcgtag ttccttggcg atagcgctct tacccgactc gatagcctct tcgcggcgct
      181 ccttggcgaa ccattgcctg atcttggcgc gggcccgggg tgaggcgacg aacgacaacc
      241 agtcccggct gggaccggcc cctccggcct tggacgtgaa gatctcgacg acctcgccgt
      301 tctccagctg ccgctccagc gcgacgagct ggccgttgac ccgcgcgccg atgcagcggt
      361 taccgacctc ggtgtgtacc gcgtaggcga aatcaaccgg cgtggagccg gtgggcagcg
      421 tgatgacctc gcccttggga gtgaagacga agatctcgcg ggtagccagg tcgtagcgca
      481 gcgactccag gaactcgctg ggatcggcgg cctcccgctg ccagtccagc agctggcgca
      541 tccaggccat ctcgtcgacg tctagagttc cgttggcggc gccgttgtgg gtaccgcgag
      601 tctccttgta ccgccaatgc gcagcgatgc cgtactccgc ggtccggtgc atgctccggg
      661 ttcggatctg cacctccagc ggtttgccat ccggcccgat cacggttgtg tgcagcgact
      721 ggtaaacccc gaacctgggc tgcgcgacat aatccttgaa tcggccgggc atcggttgcc
      781 agaccgagtg caccaccccg atagctgcgt agcagtcacg atcgtcttca accatgatcc
      841 gcaccccgac caggtcatga atgtcgtcga agtcacggcc gcggacgatc atcttctggt
      901 agatggagta atagtgcttg ggcctgccct cgacagtggc gacgatccgc gagccgccca
      961 gctgcgcgga gacctcgtca atgaccgtgc gcaggtaagt gtcgcgggag ggggctcgat
     1021 tggccaccaa tcgcacgatc tcgtcgtatt tttttgggtg caggatggcg aaggacaggt
     1081 cctctagctc ccatttgatg gtcgccatcc ctaaccgatg cgccagcggg gcaaagactt
     1141 ccaaggtttc cctggcctta cgggcctgct gctccggcgg caagaagcgc atggtccgca
     1201 tgttgtgcaa ccggtccgca agtttgatca ccagcacgcg agggtcacgg gccatcgcga
     1261 tgaccatctt gcggatcgtc tcggcttcgg ctgcggcacc gagcttgacc ttgtccagct
     1321 tggtgacgcc atcgacgagg tgcgcgacca cctcgccgaa gtccacggag agatgaccca
     1381 gcgagtaatc ggtgtcctcg acggtgtcgt gcagcagcgc ggccaccaac gtcgtggtgt
     1441 ccatgcctaa ctcggccaag atcgtcgaga ccgctaacgg atgggtgatg taaggatcac
     1501 cagatttgcg cttctggtgc gaatgctttt cctcggcgac atcgtaggcg cgttgcagca
     1561 aggccagatc ggccttggga tgcaactccc ggtgcacagc tgcgagtggc tcgagtacct
     1621 gcctgaccgg tccgggacgc tgcgcggtaa tccgccgggc cagccgggcc cgaacccgcc
     1681 gggtcgccga cggcagccgc tgagggaccg ttgctgcatc cgagccgacc agcggcgcct
     1741 cactacgctg caggtcctgg ctcacaccgc actctcccgg cacatggtga caatcagatc
     1801 tttgagccta ccgcccacgc tctcgcagca gatcccccta cacgccgctc agcattgcgc
     1861 ctcccgcgga tgaggctgct cggtcctcgg aggacatcag accgtgagta gcgcgtgcac
     1921 cggacggcct cgcagccggt cacggccacc cagcgacgcg atctccaaca ggaccgcgat
     1981 gccgctgacc gaggctccgg cccgctcgac aagtgcgcag gtcgcggccg ccgtgccacc
     2041 tgtcgccaga acgtcgtcga ccaccaacgc tcgttgacca ggccgcagca cgctgtgggc
     2101 caattccaac gatgcgatgc cgtactccaa cgcgtaactc tcacggtcgg ag
//
LOCUS       DASVXZ010000880         3085 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_610139, whole genome shotgun sequence.
ACCESSION   DASVXZ010000880 DASVXZ010000000
VERSION     DASVXZ010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610139"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..651
                     /locus_tag="VF788_18550"
     CDS             64..651
                     /locus_tag="VF788_18550"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HEX8936137.1"
                     /translation="MNTAEAGRPDRANASIVRAEQGAADRFSHVTSRIAVRRARVGDV
                     RQIKDLVDCYAGAVLLTKQLVTLYEDVQEFWVAERDGLLVGCGALHVLWEDLAEIRTL
                     AVHPGVTGQGVGQALVTQLVEHARALGLRRLFVLTFEERFFSWYGFQKIEGTPVKPEI
                     YDEMRRSHDEGVAEFLDLPYAKPNTLGNMRMLLEL"
     gene            complement(725..2995)
                     /locus_tag="VF788_18555"
     CDS             complement(725..2995)
                     /locus_tag="VF788_18555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016332639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HEX8936138.1"
                     /translation="MAGTWSLLARGAGGIARTLGRTRELEPEHRRDGLALGLIALAVV
                     VAAAVWWTAGGPVGAGLQQALRAMFGAASVGLPVVLAGVGLALMRTEPDATARPRRTV
                     GTLLLTLGTLGLWHLAAGSPADGVGRSRAAGAVGFLVADPLTGGFTVWVAAPLLVLLA
                     SYGLLVLTGTPVRAVPERIRRLCGTLPDEEPHTEAADADTPVTEADPANVRLRRPARR
                     RQATQPTEISPVEDAADAAPTVPPAQPKLDSKPSTTMAVHRVVEGDYQLPPPDLLVKG
                     DPPKARSKANDAMIEAITGVLEQFSVDAQVTGFARGPTVTRYEVEVGPGVKVEKITQL
                     TRNIAYAVATDNVRLLAPIPGKSAVGIEVPNSDREMVRLGDVLRSPTSHRDQHPMVIG
                     LGKDIEGNFVTANLTKMPHLLVAGSTGSGKSSFVNSMLVSLLARATPDEVRMILVDPK
                     MVELTPYEGIPHLITPIITQPKKAAAALAWLVEEMEQRYQDMQAARVRHVDDFNSKVR
                     SGEIVAPPGSQREYRPYPYIMAIVDELADLMMTAPRDVEDAVVRITQKARAAGIHLVL
                     ATQRPSVDVVTGLIKTNVPSRLAFATSSLTDSRVILDQPGAEKLIGMGDGLYLPMGAS
                     KPVRIQGAYVGDAEIAKVVAYAKDQATPEYTDGVTAAKPGEQKDIDADIGDDLDVLLQ
                     AAELVVTSQFGSTSMLQRKLRVGFAKAGRLMDLLESRGVVGPSEGSKAREVLAKPDEL
                     EGLLYSIRGGDPAGGD"
BASE COUNT          507 a         1029 c         1031 g          518 t
ORIGIN      
        1 accaggccaa cgttcaccta cagcgcggga acgagatcgc ccgcggcggc gaactgaacc
       61 gtcatgaaca ccgccgaggc cggacggcct gaccgggcca acgcatccat agtgcgggcg
      121 gagcaggggg ccgccgatag gttcagccat gtgacttctc ggatcgccgt gcgtcgcgca
      181 agggtggggg acgttcgtca gatcaaggac ctggtggact gctacgccgg agcggtgctg
      241 ctgaccaaac agcttgtgac gctctacgag gacgtccagg agttctgggt tgccgaacgg
      301 gacggcctgc tggtcggctg tggtgcgctg cacgtgctct gggaggatct ggccgagatc
      361 cgcaccctgg cagtgcatcc aggcgtcaca ggtcaggggg ttggccaggc gttggttact
      421 cagctagtgg aacacgcacg ggcgctgggg ttgcgccggc tgtttgtgct gaccttcgag
      481 gagcgcttct tctcctggta cgggttccag aagatcgagg ggaccccggt gaagccggaa
      541 atctacgatg agatgcgccg ctcgcacgac gagggagtcg cggaattcct tgatctgccc
      601 tatgccaagc ccaacaccct cggcaacatg cgcatgctcc tcgaactata agcattcaag
      661 atcatcattt ggatgcctta aacaacagca aatgtcgcct gcggcacacc agacgtgatc
      721 atcctcagtc gccgcctgcg ggatcgccgc cccggatcga gtagagcaga ccttcgagct
      781 cgtcaggctt ggccaggacc tcacgcgcct tcgagccttc tgaggggccc accacgcccc
      841 ggctctccag caggtccatc agccgtcccg ccttggcgaa gccgactcgc agcttgcgct
      901 gcagcatcga ggtcgagccg aactgcgagg tcaccacgag ctcggcggcc tgcagcaaca
      961 catccagatc gtcgccaatg tctgcgtcga tgtctttctg ctcgcctggc ttggccgctg
     1021 tgacgccatc ggtgtactcc ggggtggcct ggtccttggc ataggcgacg accttcgcga
     1081 tttcggcgtc tcccacgtag gcgccctgga tccgcaccgg cttggatgca cccatcggca
     1141 ggtagagccc gtcgcccatg ccgatcagct tctccgcgcc gggctgatcc aggatcaccc
     1201 ggctgtcggt cagcgaggag gtggcgaagg ccaatcggga cggcacgttg gtcttgatca
     1261 gcccggtgac cacgtcgacg ctggggcgct gggtggccag cacgaggtgg atcccggccg
     1321 cccgggcctt ctgggtgatg cggacgacgg cgtcctcgac gtcgcgggga gcggtcatca
     1381 tgaggtccgc cagctcgtcg acgatcgcca tgatgtacgg gtaggggcgg tactcccgct
     1441 gagagcccgg cggcgccacg atttccccgc tgcgcacctt gctgttgaag tcgtcgacat
     1501 ggcgcacccg ggcggcctgc atgtcctggt aacgctgctc catctcctcc accagccagg
     1561 ccagcgccgc ggccgctttc ttcggctggg tgatgatggg ggtgatcagg tgagggatgc
     1621 cctcgtacgg ggtgagttcc accatcttcg ggtcgacgag gatcatcctg acctcgtcgg
     1681 gggttgcccg ggcgagcagc gacacgagca tcgagttgac gaaactggac ttgcccgagc
     1741 cggtggaacc ggcgaccagc aggtgcggca tcttggtcag gttcgcggtg acgaagttgc
     1801 cctcgatgtc cttgcccagc ccgatcacca tcgggtgctg atcccggtgc gaggtgggcg
     1861 agcgcaacac atcacccagc cgcaccatct cgcggtcgct gttgggcacc tcgatgccca
     1921 ccgctgactt gccggggatc ggggcgagca accgcacgtt gtcggtggcg accgcgtagg
     1981 cgatgttgcg cgtcagctgg gtgatcttct caaccttgac cccgggaccc acctccacct
     2041 cgtaccgggt gacagtcggc ccccgggcga acccggtgac ctgggcgtcg accgagaact
     2101 gttcgaggac accggtgatg gcctcgatca tcgcgtcgtt ggccttgctc cgagccttgg
     2161 gcgggtcgcc cttgaccaac agatccggcg gcggcaactg gtagtcaccc tcgacgaccc
     2221 ggtgcacggc catcgtggtg ctgggcttgc tgtccagctt cggttgggcc ggtggcacag
     2281 tcggtgcagc gtcagcagcg tcttctacag gactgatctc agttggctgg gtagcttgcc
     2341 tgcgccgcgc aggccgacgc aggcggacgt tggcgggatc agcttcggta accggggtat
     2401 cggcgtcggc agcctcggtg tgcggctcct catctggcag cgtcccgcac agccggcgga
     2461 ttcgttcggg taccgcacgg actggagttc ccgtcagcac cagcagtccg taagaggcca
     2521 gcagaacgag caatggtgcg gccacccaga cggtgaaccc gccggtcagc gggtcagcga
     2581 ccaggaaccc caccgcgccg gccgcccggg atcgtcccac cccgtccgcg ggtgagccag
     2641 ccgcgagatg ccacaaacca agggttccca atgtcagaag cagcgtgccg acggtacggc
     2701 ggggccgcgc cgtcgcgtca ggctcggttc gcatcagggc tagcccgacc ccggcgagca
     2761 ccaccggtag ccccaccgac gcggcaccga acatggcacg caaggcctgc tggaggccag
     2821 caccgaccgg tcccccagcg gtccaccaca ctgccgcggc aacgaccaca gcgagcgcga
     2881 taaggccgag agcgagaccg tctcggcggt gttccggctc aagctcccgg gtccgcccca
     2941 gcgtccgggc aatcccccct gcgccacgag ccagcagaga ccacgtcccg gccaaaccgc
     3001 cgccagcact cctgctcctt gccttacggg gggttgaccg gcgcgcgggg gggcggggct
     3061 tggaacgcgg ggctggccta ttccc
//
LOCUS       DASVXZ010000881         1979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_969318, whole genome shotgun sequence.
ACCESSION   DASVXZ010000881 DASVXZ010000000
VERSION     DASVXZ010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969318"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VF788_18560"
     CDS             <1..669
                     /locus_tag="VF788_18560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009156291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX8936139.1"
                     /translation="PVDTLVVVDGCTDGTAEVVRRCGARVCELPANRGQGAALRLGYA
                     LARRGGARYIVTTDADGQYDMAELPLLLQPLIDDEADFVTGSRALGRRETADPVRHLG
                     VHVFGWLASVLTRQRLTDTSFGFRAMKAEVTEAVTLTQAQYQASELLLGTISHGYRVL
                     EQPMTMLARTAGQTKKGNNFVYGMRYARVLVGTWWREAWARRSPAPKTNRSSSANLST
                     KTGR"
     gene            complement(555..1043)
                     /locus_tag="VF788_18565"
     CDS             complement(555..1043)
                     /locus_tag="VF788_18565"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEX8936140.1"
                     /translation="MLREFTQSRLARLFTRFAAGTVVSTACSQLTFVLLFGVLDASVA
                     VSGAVAFLAGAVPNFLIHRFWTWRRSGPVEMRRELLPYLAVISFSGLVAIGITTGVDR
                     LIGSAIHDHAVLTAVVTVVYGLSYLPVFVLKFALLDRLVFGAGDRRAQASRHQVPTST
                     RA"
     gene            1161..>1979
                     /locus_tag="VF788_18570"
     CDS             1161..>1979
                     /locus_tag="VF788_18570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019814562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX8936141.1"
                     /translation="MRILVLGGDGYLGWPTTLHLSDRGHDVAVLDNFVRRSYDDELGL
                     QSLVPIEPLRRRVGAWQEISGRRLELFVGDLCDAEFTLDVVRRFHPDAIVHYAEQRSA
                     PYSMIDRRHAVYTQQNNVVGTLNVMFAIAEVDRDIHLVKLGTMGEYGTPNIDIEEGWL
                     TVEHNGRTDRMLFPKKPGSFYHLSKVHDSHNIEFGCRSWGLRATDLNQGVVYGQQTDQ
                     TAQDPRLATRLDYDAVFGTVLNRFVIQAVLGHPLTVYGAGGQTRGIIDIRDTIEC"
BASE COUNT          358 a          627 c          664 g          330 t
ORIGIN      
        1 cctgtggaca ctctggtggt cgtcgacggg tgcaccgatg gcaccgcgga agtggtgcgc
       61 cgctgcgggg ctcgagtctg cgagctgccg gcgaaccggg gtcagggtgc ggcgctgcgg
      121 ctgggttatg cgctggcccg ccgcggcggc gcccgctaca tcgtcactac cgatgccgat
      181 ggccaatacg acatggccga gctgccgctg ctgctgcagc cgttgatcga tgacgaagcc
      241 gatttcgtca ccggttcccg ggccctgggt cgacgggaga ccgccgaccc ggtgcggcac
      301 ctcggagtgc atgtgttcgg ttggctggcc agcgtgctga cccggcagcg gctcaccgac
      361 acctcgttcg gttttcgcgc catgaaagcg gaggtaaccg aggccgtcac gctgacgcag
      421 gcgcaatacc aggcttcgga gctcttgctg gggacgatct cgcacggtta ccgggtgctg
      481 gagcagccga tgacgatgct ggctcgcact gcggggcaga cgaagaaagg caacaacttc
      541 gtctacggga tgcgttacgc ccgggtactg gtgggtacct ggtggcgaga ggcctgggcc
      601 cgacgatcac ctgcaccgaa aaccaaccgg tccagcagcg cgaacttgag cacgaagacc
      661 ggtaggtaac tcaggccata caccacggtg accacggcgg taagcaccgc gtggtcatgg
      721 atggcgctcc cgatgagccg atcgacgccg gtggtgatac cgatcgccac gaggccgctg
      781 aaggagatca cagccaggta gggcagtagc tcgcggcgca tctccaccgg cccggagcgc
      841 cgccaggtcc agaaccggtg gatgaggaaa ttcggtactg cgccggccag aaaagccacc
      901 gccccggaca ccgcgaccga ggcgtcgaga acgccgaaaa gcagcacgaa ggtcagctgg
      961 ctgcacgcgg tggacaccac ggtccccgcg gcgaaccggg tgaacaacct ggccagccgg
     1021 gactgggtga actctcggag cacggcatca tcttggcaga tgggtcgcat tgcaggtggt
     1081 gcccaggctg gccttgttgg tgtttggctc ggtcatctga taggcaaacg catccactca
     1141 gcccggcagg aggcaacacg gtgcggatcc tcgttctcgg tggcgatggt tatctgggtt
     1201 ggcctaccac cctgcacctg tcggatcggg gtcacgacgt ggccgtgctg gacaacttcg
     1261 tccggcgttc ctacgacgac gagttggggt tgcaaagcct ggtgcccatc gagccgctgc
     1321 gccggcgggt gggtgcctgg caggagatct ccggtcgccg actcgagctc ttcgtcggcg
     1381 atctgtgcga cgccgagttc actctcgacg tcgtgcgccg ctttcatccg gacgcgatcg
     1441 tgcactacgc cgagcagcgc tccgccccct actcgatgat cgaccggcgg cacgcggtat
     1501 atacccagca gaacaacgtc gtcggcaccc tgaacgtgat gttcgcgatc gccgaggtgg
     1561 accgcgatat tcacctggtc aagctgggca ccatgggtga gtacggcact ccgaacatcg
     1621 acatcgagga gggttggctc actgtcgagc acaacggccg cactgaccgc atgctcttcc
     1681 ccaagaagcc gggttccttc tatcacctct cgaaggtgca cgacagtcac aacatcgagt
     1741 tcggctgccg gagctggggt ttgcgggcga cggacctcaa ccagggagtg gtctacggcc
     1801 agcagactga tcagacggca caagaccccc gcctggccac ccggctcgac tacgacgcgg
     1861 tcttcggcac cgtgttgaac cgattcgtca ttcaagcggt gctggggcat ccgctgaccg
     1921 tctacggcgc gggcgggcag acccggggca tcatcgacat ccgggacacc atcgagtgc
//
LOCUS       DASVXZ010000882         2368 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1142830, whole genome shotgun sequence.
ACCESSION   DASVXZ010000882 DASVXZ010000000
VERSION     DASVXZ010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1142830"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VF788_18575"
     CDS             complement(<1..183)
                     /locus_tag="VF788_18575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX8936142.1"
                     /translation="MTSRAFAGIDRAVAEVAAGRPVIVVDDEERENEGDLIFAAARAT
                     PELLAFTVRYTSGYICV"
     gene            393..614
                     /locus_tag="VF788_18580"
     CDS             393..614
                     /locus_tag="VF788_18580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936143.1"
                     /translation="MSTPELHWYVASFADRDTHKGVYSPASQSVHAVCGAEFVPLTIG
                     WPPIRGPLPGNPPDPDQVCQECIRRLGKP"
     gene            complement(632..1249)
                     /locus_tag="VF788_18585"
     CDS             complement(632..1249)
                     /locus_tag="VF788_18585"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX8936144.1"
                     /translation="MFTGIVEELGELLDRVERPDAARFAISGPLACSDARPGDSIAVN
                     GVCLTVVDVDGGVFTADVIGETLRRSSLGPARIGNRLNLERAAKLGDRLGGHLVQGHV
                     DGTGTVLSRTAPREAAPWELVRIGMPAALARYVVEKGSITVDGVSLTVIEVTRDEFAV
                     GLIPTTQELTTLGLRRLGDLVNLEVDVIAKYVERLAWPYDASDQQ"
     gene            complement(1276..1932)
                     /gene="rpe"
                     /locus_tag="VF788_18590"
     CDS             complement(1276..1932)
                     /gene="rpe"
                     /locus_tag="VF788_18590"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEX8936145.1"
                     /translation="MIAPSLLSADFARLADEANAVPGADWLHVDVMDAHFVPNLTFGL
                     PVVESLMKYTDIPMDCHLMIENPDRWAIGYAEAGSYNVTVHAEAAHDPVKLAKDLRAA
                     GAKAGLSVKPKTPLEPWVEVLKHYDTLLVMSVEPGFGGQSFIPEVLDKVRVARRLVDT
                     GHLTVLVEIDGGINADTIEAAAEAGVDCFVAGSAVYGADDPVRAMELLRAQARASGGR
                     "
BASE COUNT          447 a          807 c          706 g          408 t
ORIGIN      
        1 cacgcagatg tatcccgagg tgtaccggac agtgaaagcc agcagctccg gggtagcccg
       61 ggccgcggcg aaaattaggt cgccttcatt ctcccgttcc tcgtcgtcca ccacgattac
      121 cgggcgtccg gccgccacct cggcgaccgc ccgatcgatg ccggcaaagg ccctggaagt
      181 catcctgtcc tcctcccccg catcatcccc cagcctgccg ctgccagaac caagatgtgg
      241 ccagaccaac cactcgacgt acttggcgag tcttaccgag cctcagcggc atgccccagc
      301 ggggtcctcg acggctgcgg agatctaacg ccgtcaggga aacccgacga aacactcgac
      361 gaacacatat cgtcacagga agatcacaga ctgtgagcac acccgagctg cactggtatg
      421 tcgctagctt tgcggatcgg gacacgcaca agggtgtcta cagtccggcc agccaatccg
      481 tacacgcggt gtgcggtgcg gagttcgtgc cactgaccat cgggtggccc ccaatccggg
      541 gaccgctgcc cggcaaccca ccggatcccg accaggtctg ccaggaatgc atcaggcgac
      601 tgggcaaacc atgaggcgaa gcgaggaacg gttattgctg gtcagatgca tcgtaaggcc
      661 acgccaaccg ttcaacatac ttcgcgatca catcgacctc caggttgacc agatcaccaa
      721 ggcgacgcag acccagcgtg gtcagctcct gagtggtcgg gatgagcccc acggcgaact
      781 cgtcgcgggt cacctcgatc acagtcagcg atacaccgtc cactgtgatg gaccccttct
      841 cgaccacgta tcgggccagg gctgcgggca tcccgatccg gaccagttcc cagggggctg
      901 cctcccgcgg tgcagtgcgg gacaacacgg ttccggtgcc atcaacgtgg ccctgcacca
      961 ggtgcccgcc gagccggtca cccagcttcg ccgcgcgctc caggttcagc cgattcccga
     1021 tgcgcgctgg acccaggcta gagcgacgca gcgtctcgcc gatcacgtcg gcagtgaaca
     1081 caccgccgtc gacgtcgacc acggtcaggc acacgccatt caccgcgatc gagtcaccgg
     1141 gccgagcgtc agaacaggcc aatggaccgc tgatggcgaa tcgcgccgca tccggccgtt
     1201 cgacccggtc cagtagttct ccgagttcct cgacgatgcc ggtgaacacg gctcagactt
     1261 cctcggctgg cggattcacc ggccgccgct tgcccgggcc tgggcccgga gtaattccat
     1321 ggcccgcacg gggtcatcag cgccgtacac tgccgaaccc gcgacgaagc agtccacccc
     1381 cgcctccgcg gcggcctcga tggtgtcggc attgatcccg ccgtcgatct ccaccaatac
     1441 cgtgagatgt ccggtgtcca ccaatcgccg ggcgacacgg accttgtcca gtacttcggg
     1501 gatgaacgac tgcccgccaa agcccggctc cacgctcatc accagcaagg tgtcgtagtg
     1561 cttcagcact tcgacccagg gctccagcgg ggtcttcggt ttgaccgaca ggccggcctt
     1621 cgctccggcc gcgcgcaggt ctttggccag cttcaccggg tcgtgcgcgg cctcagcgtg
     1681 cacggtgacg ttgtacgagc cggcctcggc gtacccgatc gcccaccgat ccggattttc
     1741 gatcatcagg tggcagtcca tcgggatgtc ggtgtatttc atcaggctct ccaccacggg
     1801 aaggccgaac gtgaggttgg gcacaaagtg cgcatccatc acatccacgt gtaaccagtc
     1861 agcgcccggc accgcgttgg cctcatcggc cagccgggcg aagtcggcgg acagcaggga
     1921 tggcgcaatc atcggctggt gtgacacagg tgcacggtag cgcgtctcag ccatatccgg
     1981 gatagggcca gactgcgtcg acctgtgtgt ggcggcgtgg acgaggggcc cgccgtgacg
     2041 tcctgaccag gtgcttgtcc gtcgtagtcg cccaagcggc cgaactgcgg agactcttcc
     2101 tgagaagcgt tctgggctga gcggagtcaa cgcgccctga cggccgaccg tgctgttgta
     2161 tccgacggct cctacaaggt agtagaagcg ttccaacgtg ctcgcgctcc gaggcctggt
     2221 gcgctctgaa tgatacggct catgagtatt tcgagatgca actggtatcc gcgattcgaa
     2281 cccgaagaag cgagtacaac cttatcaatc cggctccatc gagcgacgaa ttcttcatat
     2341 actgattttc ccgagctgcc cgtcaccg
//
LOCUS       DASVXZ010000883         3040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_790220, whole genome shotgun sequence.
ACCESSION   DASVXZ010000883 DASVXZ010000000
VERSION     DASVXZ010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790220"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VF788_18595"
     CDS             complement(<1..231)
                     /locus_tag="VF788_18595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012782806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEX8936146.1"
                     /translation="MIERNIARLVKLRVTAGRKIAPLSIQESRHFLAVARTHRLSALW
                     AVALGIGLRRGEALGLKWSDVDLDRGRLTVRRS"
     gene            complement(302..1159)
                     /locus_tag="VF788_18600"
     CDS             complement(302..1159)
                     /locus_tag="VF788_18600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8936147.1"
                     /translation="MPLHRIVTPATLMAWHRRLVARKWTYPNRPGRPPISDEIRNIVV
                     RLAQENLSWGHRRIQGELVGLGYCLGTGTIRRILAAAHLGPAPRRADTGWRTFLRAQA
                     TGLLATDFFTVDTITLRRLYVLFVMEVRTRRVHLLGVTAHPTAAWTTQAARNLLMDLG
                     ERITCFGFLIRDRDSKLTAAFGAVFASEGIEVVKIPPQTPRANCYAERFVRSVREECT
                     DKLLIYHEQHARTVLDQYVRHFNDHRPHQSLNQRPPRHDPATVPLLDAPIRRHRILGG
                     VINEYRRAA"
     gene            complement(1253..2035)
                     /locus_tag="VF788_18605"
     CDS             complement(1253..2035)
                     /locus_tag="VF788_18605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936148.1"
                     /translation="MLFRLLYLVTLSLFGWLGLLARSGAAKDVEILILRQEVAVLRRQ
                     VTRPGLTWPDRAILSAPTRLLPHRLRTHRIITPATLLSWHRRLVTKRWTYPHRSGRPP
                     IASEIRNLVLRLAHENPSSGHRRIQGELAGLGHRVGTGTIRRILAAARLGPAPRRADT
                     GWRTFLRTQATGLLATDFFTLDTIGLRRLYVLFVMEVHYKVLKLVVRAVTWSFRGTRD
                     QAMIAGCAVSTAVSALGHGVRLAWAAYPQYRCEGCGDPGSAP"
BASE COUNT          564 a          926 c         1024 g          526 t
ORIGIN      
        1 cgagcgccgg acggtgagtc ggccgcggtc gaggtcgacg tcggaccatt tcagtccgag
       61 tgcctcgccc cgacgtagcc cgatgcccag tgcgacggcc catagcgcgg agagccgatg
      121 cgtccgggct acggccagga agtgtcggga ttcttggatc gagagtggag cgatctttct
      181 cccggccgtg acgcggagct tgaccaggcg cgcgatgttg cgctcgatca attcttcctc
      241 ggtggcgtgt accgtgccaa aactcgacgt gtagccgtga tcaggggttt tgctggtcgg
      301 ttcaggctgc tcgccggtac tcgttgatca ctccgccgag gattcgatgg cgacggatcg
      361 gggcgtcgag caggggcacc gtggcggggt cgtgccgtgg tgggcgttgg ttgaggcttt
      421 ggtgcggacg gtggtcattg aaatggcgca cgtattggtc gaggacggtg cgggcgtgtt
      481 gctcgtggta gatcaatagc ttgtcggtgc actcctcgcg gacactgcga acgaaccgtt
      541 ccgcgtagca gttcgcccgg ggcgtctggg gagggatctt gactacctcg atgccttcgg
      601 aggcgaagac ggcaccgaag gcggcagtga gcttggagtc ccggtcgcgg atcagaaaac
      661 cgaagcaggt aattcgttca ccgaggtcca tcaggaggtt gcgggcggcc tgagtggtcc
      721 aggctgcggt ggggtgagcg gtcacgccca gaaggtggac tcgtcgggtg cgaacttcca
      781 tgacgaacaa gacataaagt cggcgcaggg tgatggtgtc gacggtgaag aagtcggtgg
      841 ccagcaaacc cgtggcctga gcccgcagga aggttcgcca cccggtatct gctcggcgtg
      901 gcgccggtcc gaggtgggca gcggccagga tccgacggat cgtgcccgtc cccaagcaat
      961 atcccagccc gacgagttcg ccttggatgc gtcggtggcc ccaggataaa ttctcctggg
     1021 ccagacgcac cacgatgttg cggatctcgt cactgatcgg tgggcggcca ggccggttcg
     1081 ggtaggtcca tttcctggcc accagccggc ggtgccaggc catcaacgtg gctggggtga
     1141 cgatccggtg tagaggcaac tggcggggga gcagacgggc cagagcggac aggatcgccc
     1201 ggtccggcca tcgaggacca ggtctgccga cctgacgcgt agcaccgaga cttcatggcg
     1261 cagaaccagg atctccacat ccttcgcagc ggtactgcgg gtaagcagcc caagccagcc
     1321 gaacaccgtg accgagagca gatacagcag tcgaaacagc acagcccgcg atcatggcct
     1381 gatcgcgggt accgcggaaa ctccaggtca ccgcacgcac gacgagtttt agcaccttat
     1441 agtgcacttc catgacgaac aagacgtaaa ggcggcgcag cccgatggtg tcgagggtga
     1501 aaaagtcggt ggccagcagc ccggtggcct gagtgcgcag gaaggttcgc cacccggtgt
     1561 ctgctcggcg tggtgccgga ccgagccgag cagcggccag gatccgtcgg atggtgccgg
     1621 tgcccacgcg gtgcccgagt ccggcgagtt cgccttggat ccggcgatgg cccgaggaag
     1681 ggttttcgtg ggccaagcgc agcaccagat tgcggatctc gctggcgatc ggtgggcggc
     1741 ctgatcggtg cggataggtc catcgtttgg tgaccaggcg gcgatgccag gacaacagtg
     1801 tggcaggagt aatgatccga tgggtacgca gccggtgagg gagtagccgg gtcggcgcag
     1861 ataagatcgc ccggtctggc catgtcaggc cgggcctggt cacctggcga cgcagcacgg
     1921 caacttcctg acgcaggatg agaatctcaa cgtccttggc tgcgccactg cgggctagca
     1981 gtccaagcca gccgaacagg ctgagcgtga cgagatacag caatcggaac agcacggccg
     2041 atgatcgtgc catgcgcact caggatcgtc gaaaaccgca ggtcacctta cctgcgatga
     2101 gttttggcac accacaccat gcggacgacg atgttgagca ggggagacat gtccctgccg
     2161 aaaccccgca gcctcgtaac tcctggtgat cttgcgcacg tcatccccgc tcatggagtc
     2221 aggctgagtg gacgagcgcg acagcacatt tacaatgcgt taccagcatt acagcgcgtc
     2281 atcaccgcgt tccatcaccg cgttccacca cgcgggttgt ctggttgtct ggttgtctgg
     2341 tgcattgccg aattctcctc tatgggatca aggccgccgc tggcggcggc accacccacg
     2401 cacaaaactt gagcccggcc gtccagcccc ggccgttcga ccgaaaccac gacactgcgc
     2461 gcggccctac gggccgtgct cggtcgcggc ccggtcgaac gggcctgacc cctgtcacgt
     2521 cgatgcgctg ccaccggccg acccaattat tctgtacctg ggcggtgttg gccgcggcgc
     2581 aggccgcgaa gatggtgcgg acccgcaaag cccggaggcg accaaggccg tgcggcggag
     2641 caggcctggc tacgccgcca gctccaggcc gaccgggcgg cagcggcgat gctgtgaaaa
     2701 cgatccatgg atccccaatt ggctgctacc gctcccgagc agctcaccaa gcgtggtcgt
     2761 cggccgtcgc gtggagaagc tctggacccg ctcgtcatct cctgatcggc gctggcttcg
     2821 cgatcagccg cgccagtctg gcgcgtacct ccccaaaacc gggtcgtccc tcaagcacct
     2881 tggaaagccc cctacgaacg atgggccagc gttgcctgcc gtcaaatcgg gttccgtata
     2941 agagccactg tagttagata cgccgcagcg cccagaagca gagcccactg tgaaaatctc
     3001 cgagatcctc ataccatccc ccatgtcaat gccgtgtcgt
//
LOCUS       DASVXZ010000884         3660 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_970756, whole genome shotgun sequence.
ACCESSION   DASVXZ010000884 DASVXZ010000000
VERSION     DASVXZ010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3660
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_970756"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(764..2308)
                     /locus_tag="VF788_18610"
     CDS             complement(764..2308)
                     /locus_tag="VF788_18610"
                     /inference="COORDINATES: protein motif:HMM:NF013918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX8936149.1"
                     /translation="MARASGLMAWALLSASVLAGLLMGTRLTRRSTRRFTQGYHQFVG
                     ALAVTFTTIHVVSVFSAGQLQVGVVQLLFPFTKPDDPAAQGCGVIAFYLLTAVVLTSW
                     VQKVMPWRWWRRVHLLSLPLWGLATVHTVLAGTDIADPAMYWEVVAVTAVVVCLMVAR
                     LATARRAGAGTAPDAGLPPAGKATMAGGRPRLSWSVVSPAMDTPVSTGMQLIISQTTW
                     EAENVLSLRLGFADGTALPSWEPGAHIELALPSGRRRQYSLCGDPKDTRTYRIAVLRV
                     PIGRGGSVELHTIARVGQQMTVHVPRNHFPMVVSPAYLFIAGGIGITPMMAMAAQVAS
                     ADCEWKLVYSGRRRASMAFVNEVRALGANRVDVLPGDERERPDLPAIINAAPPGAAVY
                     CCGPDRMMQAVREQVLIRGDLSLHSERFTCTVTGGAAFQVELLRSRHIIDVPTNRTIL
                     QAVHDVVPAISAGCEQGVCGACRTTILAGEPDHRDELLSNAERAAGAMLICVSRARTE
                     RLTLDL"
     gene            complement(3039..>3660)
                     /locus_tag="VF788_18615"
     CDS             complement(3039..>3660)
                     /locus_tag="VF788_18615"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR03618 family F420-dependent PPOX class
                     oxidoreductase"
                     /protein_id="HEX8936150.1"
                     /translation="LAGVTYLVVTPFDGRPDYPRPGCRRHRSVRVSGLGRARLPRARS
                     SSRDCGTLGDDREGDQAMPDLHDVVELAAANGHLAVISTIRADGTVQASLVNAGTSTH
                     PKTGQKVLALVAGGRVKLANLRARPTTTVTFHHRWNWITIEGIAELAGPDDTKLGLSP
                     DELTALLRTIFADAGGTHDDWTTYDRTMAQERRAAVLIRPTRIYGN"
BASE COUNT          731 a         1140 c         1122 g          667 t
ORIGIN      
        1 cgagccctgg ggtcgtagat atcccgaacc cgtgctccac ggtccacctg ccgacagcga
       61 tcttcgactt cgacgtgcgt caggtcgaca acctttcgta tcgacatcag taaggcgcac
      121 acagctcggg tgtggaacta ctggttgggt ggcaaggaca attatccggt cgatcgtgcg
      181 gtcggtgaac aaatccaagc cttcctgccg gacgtcgttg acgctacacg cccagtgggg
      241 gtttttggtc cgcgtcgtcc gctacctggc cgccgatgtg gggatccacc agttcctcga
      301 catcggcact gggctgccca ctgctaataa cacccacgaa cggtggccgc cctacgtccc
      361 ggaccgacac aatcaaagat cacgatctac ggctggagta ccagccagga tcagcgcgaa
      421 aataagccgg gcttggcgtc cataagacgg ccagtcgcct acagccccat aggcaaactt
      481 cactactatt tgaccgataa accggatcat cgctgtcagg agatcgatac ttccgataaa
      541 cgggtagtca taagcctgta agggcacacc cacagcccct cggactggcc acgcttgttg
      601 aaaatacagt ttactacagg aaatcgaaac tccttgtaag agttcccgtt cagggtttct
      661 gggtgacatg gtgtgactaa atgtgcctct gccaacttca cctccggcat acccgctcgg
      721 gtgacaagcg gcacctgaac gggagcttgt cacctcgggg caactacagg tcgagggtga
      781 gcctttcggt gcgggcgcga gagacgcaga tcagcattgc cccggctgcg cgctcagcgt
      841 tgctgagtag ttcgtcacgg tggtcgggtt cgccggccaa gatagtggtg cggcaggcgc
      901 cgcaaacacc ttgctcacac ccggcggaga tggcgggaac aacatcgtga acggcttgca
      961 gaatcgtgcg gttagtgggc acgtcgatga tgtgtcggct ccgcagcagc tcgacctgga
     1021 atgccgcgcc gccggtgacg gtacaggtga aacgctcact gtgcaggctg aggtcgcctc
     1081 ggataaggac ctgctcccgc acggcctgca tcatccggtc cggaccgcag cagtagacag
     1141 ctgcacccgg tggggcagca ttgatgatcg cgggcaggtc gggccgctcc cgctcgtcac
     1201 cgggcaggac atcgacccgg tttgccccca atgccctgac ctcgttgacg aacgccatgc
     1261 tggctctgcg ccgcccgctg tagactaatt tccattcgca atcagcggat gcgacctggg
     1321 ccgccattgc catcatgggt gtgattccga tcccgccggc gatgaacagg tacgccgggc
     1381 taacgaccat cgggaaatgg ttgcgcggga cgtgcactgt catctgctgc ccgacccggg
     1441 cgatggtgtg cagctccacc gacccaccac gcccgatcgg aacccgcaac accgcgattc
     1501 ggtaggtgcg ggtgtctttg gggtcgccac acagcgagta ctgccggcgc cgtcccgatg
     1561 gcaaggccaa ttcgatatgc gctcccggtt cccagctcgg tagagccgta ccgtccgcga
     1621 aacccaaccg caaagacagg acgttttcgg cctcccatgt ggtctgactg atgataagtt
     1681 gcatcccggt gctcaccggg gtatccatcg cgggggaaac aacggaccag gacagccgcg
     1741 gccggccgcc ggccattgtc gctttcccgg caggtggtag gcctgcatcc ggagctgtcc
     1801 cggcgccggc cctccgcgcg gtggccaacc gcgcgaccat caggcaaaca accaccgccg
     1861 ttaccgccac aacttcccag tacatagccg ggtcagcaat atcggtgcca gccagcacgg
     1921 tatgcacggt tgccaaaccc cacagcggta acgacagcag gtgcacccgg cgccaccaac
     1981 gccacggcat caccttctgc acccacgagg tcagcaccac tgcggtgagg aggtaaaatg
     2041 cgatcacccc gcaaccctgc gccgctggat catccggctt ggtgaatgga aacagcagct
     2101 gcacaacacc aacctgcaat tgaccggcac tgaacacaga aaccacgtgg attgtggtga
     2161 acgtgacggc gagcgctccg acgaactggt ggtacccctg cgtaaatcgg cgcgtgcttc
     2221 tccgcgtcag ccgcgtgccc atcagcagtc cagctagtac cgatgcgctc agcagtgccc
     2281 aagccatcag ccccgacgcg cgggccacgt tccaccacag caccggatca agccgaatct
     2341 gctagatcat agggttgtgc gctcgccatc agacttatca ggatcatcat cgcgcctgtg
     2401 ctgacaattc cggccccggc gcttgaccgc tagctggctg aatctgtgaa tcagtcaccc
     2461 gacccccagc aggaaagctc tagctaaata agaacctcac ctttaagtca caacgaatcc
     2521 agagagaacg acctatgtta ctcgaccgga tccatggcgt agccaccgcg caatattttc
     2581 agaccgatcg atgacatcgc tatgtcaacc tcccctgtga catgtcgact ccggtcatgc
     2641 atcgccaaag gccagtcggg ctaggggcac tgacgccagg cccccatgcg atccgactat
     2701 accggtggcg ttaacactca atgtagggaa gggctacagc aagttaaagg gctaaacggg
     2761 cgtcatttga cccgaagccg cgagtagcgg cacaacatgg cgaagaccgg cactgatgca
     2821 cctaagcacc gtagggggta ccgccgatga ccaggtttcc ggatcggtga ggcgaatggt
     2881 tgcgttgccg acgccgccat ccccgagact ccttaccgtc ggggtagtac agggcgtggt
     2941 ggtgagcatc gctcaacgga tcgctggtag aacgtgtgcg cgagctgtag gaggtccccg
     3001 agttcgtggg gctgggcctg gcgaggagtg ggcatcgttt agttgccgta gatccgggtg
     3061 ggtcggatca gcactgcggc gcggcgttcc tgtgccatgg tgcggtcata ggttgtccag
     3121 tcatcatggg tgccgcccgc gtcggcgaag atggtccgta gcagggcagt gagctcgtcg
     3181 ggactgagcc cgagcttggt gtcgtcgggg ccggcaagct cggcgatgcc ttcaatggtg
     3241 atccagttcc agcggtggtg gaaggtcact gtggtcgtgg ggcgggcacg caggttggcc
     3301 agtttgaccc ggcctccagc gacgagagcc agcaccttct gtccggtctt gggatgggtg
     3361 cttgtcccag cgttgaccag cgatgcctgg actgtgccat cggcacggat ggtggatatg
     3421 acggcgaggt gtccgttggc tgctgccagt tcgacgacgt cgtgcaggtc gggcatggcc
     3481 tggtctccct cgcgatcgtc accgagtgtg ccgcagtctc gggacgagga tcgtgctcga
     3541 ggaaggcgag cacgacccag cccgctgacc ctgacgctgc ggtgccggcg gcaaccaggc
     3601 cgagggtaat ccggtcggcc atcgaacggt gtcaccacga ggtatgtcac cccagcgagg
//
LOCUS       DASVXZ010000885         2427 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1493164, whole genome shotgun sequence.
ACCESSION   DASVXZ010000885 DASVXZ010000000
VERSION     DASVXZ010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1493164"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1021
                     /gene="kgd"
                     /locus_tag="VF788_18620"
     CDS             <1..1021
                     /gene="kgd"
                     /locus_tag="VF788_18620"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804941.1"
                     /note="kgd; produces succinic semialdehyde; part of
                     alternative pathway from alpha-ketoglutarate to succinate;
                     essential for normal growth; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HEX8936151.1"
                     /translation="FAELLALGSVCLDGRMVRLSGQDTRRGTFVQRHSVLIDRKTGAE
                     YTPLNNLSPDQAKFLAYDSALSEFAAVGFEYGYSVANPEALVLWEAQFGDFINGAQAV
                     IDEFISSGEAKWGQRCDVVLLLPHGHEGQGPDHTSGRIERFLQLCAEGSMTVAQPSTP
                     ANYFHLLRRHALDGVHRPLVVFTPKSMLRLKAAVSPVEDFTSGRFASVLDDPTITDRS
                     AVRRILLCSGKISYELHATRQQRGIHNTAILRIEQLYPVPQRRLSAALKRYPNTAEVC
                     WVQEEPANQGAWPFYGLSLPDLMPERLGHLRRISRRAMAAPSAGSAKVHDVEQRELIA
                     AALDT"
     gene            1144..1338
                     /locus_tag="VF788_18625"
     CDS             1144..1338
                     /locus_tag="VF788_18625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6104 family protein"
                     /protein_id="HEX8936152.1"
                     /translation="MYFTDRGIEELEDRRGGEQLSVEWLAARMRTFVDDHPGFEDAVE
                     RLATFLARDDADEPDNPRVD"
     gene            complement(1372..>2427)
                     /locus_tag="VF788_18630"
     CDS             complement(1372..>2427)
                     /locus_tag="VF788_18630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX8936153.1"
                     /translation="DLGSDGGLQWSNGRPGATLGSMDYTQLGRSGLSVSRLCLGTMNF
                     GPETSEADSHAIMDRAHEQGINFFDTANVYGWRKGEGFTEQIIGRWFALGGERRERTV
                     LATKLYGSMGDWPNETKLSALNIRRACEASLRRLKTDYIDLYQMHHVDRATPWGEIWE
                     AMAVLRQQGKIIYVGSSNFAGWHLATAQETARRQHVTGLVSEQSIYNLLTRWVELEVL
                     PAARHYGIGLIPWSPLNGGLLSGALRKQREGVGSRSTTGRSADALEANRERIEAYEKL
                     CADLGEDPANVGLAWLLHQPGITAPIVGPRTIAQLDSSLRAVTITLDTEVLARLDELF
                     PPPAPNGAKPAPEAYAW"
BASE COUNT          399 a          821 c          781 g          426 t
ORIGIN      
        1 cttcgctgag ctgctggcgc tcggttcggt atgcctggat ggccggatgg tgcgactgtc
       61 cggtcaggac acccggcgcg gcacctttgt gcaacggcat tcggtgctga tcgaccgcaa
      121 gaccggagct gagtacaccc ccctgaataa tctttcgccg gatcaggcga agttcctggc
      181 ctacgactcg gcgctgtcag aattcgctgc agtgggtttc gaatacggtt attcggtggc
      241 gaaccccgag gcgttggtgc tctgggaagc gcagttcggt gatttcatca acggtgcgca
      301 ggcggtgatc gacgagttca tctcctccgg cgaggccaag tggggccagc gatgcgacgt
      361 ggtgctgctc ctgccgcacg gccacgaagg gcagggcccc gaccacacct ccgggcgcat
      421 cgagcggttc ctgcagctgt gcgcagaggg ttcgatgacc gtcgcacagc cctcaactcc
      481 ggcgaactac ttccacctgc tgcgccggca cgccttggac ggggtgcacc ggccgctggt
      541 ggtgttcacg cccaagtcga tgctgcgcct caaggcggcg gtgagcccgg tggaggattt
      601 cacctcaggt cgcttcgcct cggttctcga cgatccgacg atcaccgacc gctcagcagt
      661 gcgccgaatt ctgctgtgta gcggcaagat cagctacgaa ctacacgcca cccgccagca
      721 gcgcggcatc cacaacaccg cgatcctccg tatcgagcag ctctacccgg tgcctcaacg
      781 tcggctgagc gcggcgctga agcgctaccc gaacaccgcg gaggtctgct gggtgcagga
      841 ggaacccgcc aatcagggcg cgtggccgtt ctacgggctg agcctgcccg acctgatgcc
      901 cgagcggctc ggccacctgc gaaggatctc ccgccgcgcc atggcagccc cctccgccgg
      961 gtcagccaag gtgcacgacg tcgagcagcg tgagctcatc gccgccgccc tcgacaccta
     1021 aacccaccca tcccggcgtg tcgcgctctc ctgctccgtg tgtcgggctt tggtgcacgg
     1081 cgtgtccgcg tactctgccc cgaccggtac cggcgcaggc cccttgggcg gggaggagtc
     1141 caggtgtatt tcaccgaccg tggcattgag gaacttgaag accggcgcgg cggcgaacag
     1201 ctcagcgtcg agtggctggc ggccaggatg cgcacgttcg tcgatgatca ccctgggttc
     1261 gaggacgccg tcgagcggct ggccaccttt ctggcccgcg acgacgccga cgagccggac
     1321 aacccgcgtg tcgactagcg acggtgcccg ccattactgg ccggcagacg ttcaccaggc
     1381 gtaggcctcg ggagcgggct tggcgccgtt gggcgccggt ggcgggaaca gctcgtcaag
     1441 ccgggccaac acctcggtgt ccagggtgat ggtgacggcg cgcagtgagc tgtccagttg
     1501 cgcgatggtc cgcgggccga cgatcggcgc ggtgatcccg ggctggtgca gcagccaggc
     1561 cagcccgacg ttggcggggt cctcgccgag gtcagcgcac agcttctcgt aggcctcgat
     1621 gcgctcccgg tttgcctcaa gcgcgtcggc cgaacggccc gtggtgctcc gtgaaccgac
     1681 tccctcacgt tgcttgcgca gcgcaccgct gagcaggcca ccattcagcg gagaccacgg
     1741 gatcagcccg atgccgtagt ggcgagcagc gggcagcacc tccagctcga cccaccgggt
     1801 gaggagattg tagatcgact gctcgctgac tagcccagtc acgtgctgcc gtcgggccgt
     1861 ctcctgcgca gtcgccagat gccagccagc gaagttcgac gagccgacat agatgatctt
     1921 tccctgctgc cgcaatactg ccatggcctc ccagatctct ccccacggag tggcgcggtc
     1981 cacgtggtgc atctgataca ggtcgatgta gtcggtcttt agccggcgca gcgaggcctc
     2041 gcaggcccgc cggatattca gcgcggagag cttggtctcg ttgggccagt cccccatcga
     2101 gccgtaaagc ttggtcgcca gcaccgtgcg ctcgcgacgt tcgccaccta aggcgaacca
     2161 tcggccgatg atctgctcgg tgaacccttc acccttgcgc cagccataga cattggcagt
     2221 gtcaaagaag ttgatgccct gttcatgggc ccgatccatg atcgcgtgac tgtctgcctc
     2281 cgaggtctcc gggccgaagt tcatcgtccc cagacacagt cgggataccg aaagaccgct
     2341 acggcctagc tgcgtgtaat ccatactccc cagcgtcgca ccagggcggc cattagacca
     2401 ctggaggccc ccatcgctgc ccagatc
//
LOCUS       DASVXZ010000886         2229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_791577, whole genome shotgun sequence.
ACCESSION   DASVXZ010000886 DASVXZ010000000
VERSION     DASVXZ010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_791577"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(201..1418)
                     /locus_tag="VF788_18635"
     CDS             complement(201..1418)
                     /locus_tag="VF788_18635"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005445034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEX8936154.1"
                     /translation="MGNRREAWGAVLARVVDDSHLVTGDQLSVMLNDAIHEVGLTADV
                     LVVDLPQRVLNPMSPHTSPPVQVEGTLAGRVYQLGQILPATDSDGDRLLWVPMLDGTE
                     RIGVLRIGLGQDVIDDDDLRKWCWSLAGLMGHILMTKIAYSDRLRGLRTNRTLSAPSE
                     LLWQLLPPRTFANERAVVTALLEPHDQVAGDAYDYAADSTTLDLAVFDAVGHDMQACL
                     TTALAMTAIRNTRRAGEADLAIQADRASQLIIAQPGPLRFVTAVLARLDTETGLLRYL
                     LAGHPPPLLVRGGRVVKELAHPPRRPLGFAAAPPGDQVIAEEQLEPGDRLLLYSDGVI
                     EARDATGEFFGEQRLVDFTERASLAELSAPETLRRLTAAVLAHQGGQLQDDATLLMVD
                     WSANAHRRMSPAL"
     gene            complement(1534..1905)
                     /locus_tag="VF788_18640"
     CDS             complement(1534..1905)
                     /locus_tag="VF788_18640"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8936155.1"
                     /translation="MTAPDLPLCIEVQLANEGAAAIVRVTGELDTVTVPVLEAQLVAV
                     QANLVAPAPLVLDLSELSFMSSAGLVLLVTYHERCAAQGSRLWVVTGDNRRVLRPVHI
                     TGLDGDLDLVATVADALHKDR"
BASE COUNT          406 a          701 c          742 g          380 t
ORIGIN      
        1 ctgcacgacg cactactccg tcatcgaccc gagtcccgcg ccacccttct cgtgcgcccg
       61 gacaacactg cggcccaccg tgcataccga tcgtggggct ggcacaaaat cggtgaactc
      121 caaccatttg acgacgcgcc gatattcgac gccatggtgc gcgagttacg tcggtagcgc
      181 gcagtcgcac ggaccagctg tcagagcgcc ggtgacatcc ggcggtgggc gttggccgac
      241 cagtcgacca tcagcagggt ggcatcgtcc tgaagctgcc caccctggtg tgcgagcacc
      301 gcggcggtca gccgtcgcaa ggtctcgggc gcagacagct ccgcgagtga ggcgcgctcg
      361 gtgaagtcga ccaaccgttg ctcgccgaag aattctccgg ttgcgtcccg ggcctcaatg
      421 acgccgtcgg agtacagcag cagccgatct cccggctcga gttgttcctc ggctatgacc
      481 tgatcaccgg ggggtgcggc agcgaaaccg agcgggcgcc gcggtgggtg ggcgagttct
      541 ttgacgaccc gcccgccgcg cacgagcagc ggtgggggat ggccggctaa cagataacgc
      601 agcaggcccg tttcggtgtc gagccgggcg agcaccgcgg tgacgaaccg cagcggacca
      661 ggctgggcga tgatcagctg gctggcacga tcggcctgga tggcgaggtc ggcctcaccg
      721 gcgcggcgag tgttgcgaat agcggtcatc gccagggcag tggtcaaaca tgcctgcatg
      781 tcgtggccga cggcgtcgaa caccgccaga tccagtgtgg tcgagtccgc ggcgtagtcg
      841 taggcgtctc cggcgacttg atcgtggggt tccagaagcg cggtgaccac agcccgctca
      901 ttggcgaagg tgcgcggcgg gagcagctgc cacagcagct cggagggtgc agacagcgtc
      961 ctgttggtgc gcagcccccg caaccgatca ctataagcga tcttggtcat caggatgtga
     1021 cccatcagcc cggccaacga ccagcaccat ttccgcaaat cgtcgtcatc gatcacatct
     1081 tggccgagac cgattcgcag cactccgatg cgttcggtgc catcgagcat gggaacccac
     1141 agcagccgat caccgtcgct gtcggttgcg ggcaagatct ggccgagctg gtagacgcgc
     1201 cccgcgagtg ttccttcgac ctgcaccggt ggggacgtgt gcggcgacat cgggttcagt
     1261 actcgttggg gcaggtcgac cacaagtaca tccgcggtga ggcctacctc atggattgca
     1321 tcgttgagca tgaccgagag ctggtcgccg gtgaccagat gggaatcatc gaccacgcgc
     1381 gccaacactg cgccccatgc ttcgcgccga ttgcccatgc ggggtcctgt cctgtcctgg
     1441 tccgcgccga tgtcgccaac cagcacaacg gccgcgggga cccccggtat cgtcaccagc
     1501 ccatgaaaac tagcgtgaac ggcgattcac aggtcagcgg tccttgtgca gtgcgtcggc
     1561 tacggtggcg accaagtcca aatcgccatc cagcccggtg atgtgcaccg ggcgcaacac
     1621 cctgcggttg tccccggtga ccacccacag ccggctgccc tgcgcggcgc atcgttcgtg
     1681 gtaggtgacc agcaggacca agcccgcgga ggacatgaag ctgagctcgc tgagatcgag
     1741 cacgagcggg gcgggcgcaa cgagattggc ctgtacggcg acgagctggg cctctagtac
     1801 cggcacggtt accgtgtcca gctcaccggt gactcgtacg atcgcggccg cgccctcgtt
     1861 cgcgagctgc acttcaatgc agagtggcag atccggggcg gtcacggctg gatggcagga
     1921 acgaagatgt cgggcatcgc gacggccctc cctggtcctg cccggggcag gaacgtcagc
     1981 aagcataggg tgacgttcaa agatatgggg aagcgctgcg tgtgcgcaag acgccacaag
     2041 acgcatagtg caacgaggtg cggcttcggg tggacacgcc gcgccgacac ttcgggaatc
     2101 accgggtgtg tgctctactc tggacagacg cgcgcacgcg gaattgggga ggtacgatga
     2161 ttgttctggg tatcattttg ttggttattg gttacctgct cccgctacac atcctgatta
     2221 cgctgggaa
//
LOCUS       DASVXZ010000887         2861 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_791696, whole genome shotgun sequence.
ACCESSION   DASVXZ010000887 DASVXZ010000000
VERSION     DASVXZ010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_791696"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..679)
                     /locus_tag="VF788_18645"
     CDS             complement(104..679)
                     /locus_tag="VF788_18645"
                     /inference="COORDINATES: protein motif:HMM:NF014741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF222 domain-containing protein"
                     /protein_id="HEX8936156.1"
                     /translation="MRTHPERIRAGIFSSRVEVETELARHARTLDAGQLAILGKRILA
                     YLDQDGRRPNDLPESRRTLRFHDRDGGYELSGWLDREAAEILRSALSPLAAPRPSTDT
                     EIDLRTTAQRDADALVELASRALSDGALPTEGGERPQVVVTVSLPVLQGRIGSAHLAS
                     VARSTPTSPAGSPVMRGSSRWCWASGVNRWT"
     gene            672..977
                     /locus_tag="VF788_18650"
     CDS             672..977
                     /locus_tag="VF788_18650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936157.1"
                     /translation="MRTLFVHHCSQSVVEAGACREPRLLGVESSLHTSQHDVINPSRV
                     AKADNGKALVGEQYSPQSLVGLTFRAAVAVLGIEVDRTSKIAQVLFVIGGDSLGDSR"
     gene            complement(1402..1617)
                     /locus_tag="VF788_18655"
     CDS             complement(1402..1617)
                     /locus_tag="VF788_18655"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX8936158.1"
                     /translation="MGAWLATRARQVVREPLLEDGISVLTPFTAYLIAEEIPASGVLA
                     VVASGLALSQVGLRLVSARTRLQARAF"
     gene            complement(1747..1977)
                     /locus_tag="VF788_18660"
     CDS             complement(1747..1977)
                     /locus_tag="VF788_18660"
                     /inference="COORDINATES: protein motif:HMM:NF013955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IPT/TIG domain-containing protein"
                     /protein_id="HEX8936159.1"
                     /translation="MQIDSILPERVSPGQSVVIQGDGLETVEKVFLGDEEVPFDVDGE
                     TLVVQVPDVSGEVELTIQGGDGENDTSSITVE"
     gene            2372..2857
                     /locus_tag="VF788_18665"
     CDS             2372..2857
                     /locus_tag="VF788_18665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936160.1"
                     /translation="MAAAKVLETYLSDHLGGATAGVELAKKISSEYAKTTFGPFLAEL
                     AQEIEQDKVTLEELMDRLEIERSPIKEATSWVAEKVSRLKLSDTMTGDEDLKRLLEFE
                     MLSLGIEGKASMWRALIEVSPSHVELAATDLAGLAKRAESQRANLENHRLQVANRALS
                     R"
BASE COUNT          531 a          956 c          943 g          431 t
ORIGIN      
        1 tcgcaccagc gagccggtac tgcacacccg ggaaacgcac acccgccgtc gcggagaagc
       61 accgcgcggc ggatcgctgc cggcacggtg cgggtggccc gccctacgtc cagcggttca
      121 ccccggaagc ccagcaccac cgggatgacc cccgcatcac aggcgagcca gcgggcgatg
      181 tcggtgttga tcgggccacc gaggccaggt gggcgctgcc gatccggcct tgcaggacgg
      241 gcaggctgac ggtgaccacg acctgggggc gttccccacc ctcggtgggc agagcgccgt
      301 cgctgagcgc gcgtgaggcg agctcgacca gggcgtcggc gtcgcgctgc gcggtggtgc
      361 gcaggtcgat ctcggtgtcg gtgctcggcc ggggtgcggc cagcggactc agcgccgagc
      421 ggaggatctc ggcggcttcc cggtccaacc aaccggacag ttcatagccc ccgtcgcggt
      481 cgtggaagcg cagcgtccgg cggctctccg gcaggtcatt cggacgccgg ccgtcctgat
      541 ccaggtacgc caggatccgc ttgcccagga tcgcgagctg gccggcgtcg agcgtgcggg
      601 catggcgagc cagctctgtt tccacctcga cccgggacga gaaaatgccg gcgcggatcc
      661 tctccgggtg agtgcgcacc ttattcgtgc atcattgttc acagtcagtc gtcgaggccg
      721 gcgcgtgccg cgagccgcgc ctcctcggcg tcgagtcgag cctgcacacg tcacagcacg
      781 atgtcatcaa tccgtcccgc gtcgcgaagg cggataacgg caaggcgctt gtcggcgagc
      841 agtacagccc gcaatctctc gtaggcctca cgttccgcgc ggccgttgcc gtcctcggca
      901 tcgaggtcga tcggaccagc aagatcgcgc aggtgctctt cgtaatcggc ggagactcgc
      961 tcggtgacag ccggtgagat ctccagccgg gtggcggcag cgggcagcgc ggccaggcca
     1021 acctgtgtcg ccgtgcgctc ggccagttgt tgctcctgag cttcggcacc gtcgtcaggc
     1081 agtcgggccc agcgcagtac cgcgggtcat cagcaaggtc accaggatca ccccgaaggt
     1141 gaccaaaacg atgagccagc gaaacgccgc cgcggaaccc ggcccaggcg gaaggcaacc
     1201 gatgccgcgc actgacccgg cgcaaccgct gctgcgggcg gcggtaccag gtcagccggg
     1261 tggcgatgac cgctgcggcg atcagtagcg cgtcgcgcgc ggcttcggcc agcgagtaag
     1321 gagccaaatt tgcccagcgc tgcgcacctg cggaccgacg agcacgaaca gcgtcccgtt
     1381 cagcaggaat gtggtgaact gtcagaacgc cctcgcctgc agccgagtgc gcgccgaaac
     1441 gagccgcagg ccgacctggc tgagcgcgag tccgctggcc acaaccgcca acactcctga
     1501 ggccggtatc tcctccgcga tcaggtacgc cgtgaacggg gtgagcacgc tgatcccgtc
     1561 ctccagcaac ggctcccgga cgacttgccg cgcccgggtg gcaagccagg cccccaacag
     1621 gccggcaccg tcgggcgccc ccagatcgcc ggcagccagg gggcctcagg gtgggcgacc
     1681 gagcggatgt cgcccgaaaa gggggcgcga aacgatcgtc gcccctggcc tgtcgacggg
     1741 tcggcgctac tcgacggtaa tgctggaggt gtcgttctca ccatccccgc cctggatggt
     1801 tagctcgact tcaccggaga cgtcaggaac ctgcaccacg agagtctcgc catcgacatc
     1861 gaacgggacc tcctcgtcgc cgagaaagac cttctccacg gtctccaagc catcaccttg
     1921 gatgaccaca gactggcctg gcgacacccg ctccggaagg atgctgtcga tctgcacgga
     1981 gactcctatc gagggctgga cgtttgctgg agccaagtac ccgcggcacc caccgttaaa
     2041 ccgaacgcac ccaaaccatg gcagccgtcc gtcagctcgg caagcacgcg cgccgatagt
     2101 gccaggcatg taaggccctg ctcagcggct cttgtccggc ggcgacgtcg acctggactc
     2161 gatgaccagg tcggctgtca gcggggaacc cctgctgcaa ttgggtcagg ttgcaggctg
     2221 atagctggag gccggtgggc cgctaggata agtacgtgga gacctctggc cgttccacca
     2281 tgacccgcca ggatctcgtc gcgagcgtcg agcccgctag tccggcgaat acatccttac
     2341 cctcccagac atccctcgaa ggagaatgat catggctgca gccaaagtac tggagaccta
     2401 tctcagcgac cacctcggtg gtgctaccgc aggcgtcgag cttgcgaaaa aaatcagctc
     2461 cgaatacgca aaaaccacat ttggtccctt ccttgccgag ctagcccagg aaattgaaca
     2521 ggacaaggtg acgttagagg agcttatgga tcggcttgaa atcgagcgga gcccgatcaa
     2581 agaggccacc agctgggttg ccgaaaaggt cagcaggctg aagctcagcg ataccatgac
     2641 cggtgatgag gacctgaagc gactgctgga gttcgagatg ctgtcattgg gcatcgaggg
     2701 caaggcatcg atgtggcggg ccctgatcga ggtgagtccc tcacatgtcg agctcgccgc
     2761 aaccgatctg gcggggctcg ccaagcgcgc cgagagccag cgcgccaatc tggagaacca
     2821 ccggcttcag gttgccaacc gggcactaag ccgctgacga c
//
LOCUS       DASVXZ010000888         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_612973, whole genome shotgun sequence.
ACCESSION   DASVXZ010000888 DASVXZ010000000
VERSION     DASVXZ010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612973"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VF788_18670"
     CDS             complement(<1..387)
                     /locus_tag="VF788_18670"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8936161.1"
                     /translation="MALHRTPTERLIDRLNRNPILLGVLNLRFKYGYRFLSRLLIRDD
                     VLFLNYGYEEDPPMALPLAASDEPDRFPIQLYHRTATQVDLAAKKVLEVSCGHGGGAS
                     YLMRTLRPAAYTGLDLNTVGIAFCRKR"
     gene            480..>1976
                     /locus_tag="VF788_18675"
     CDS             480..>1976
                     /locus_tag="VF788_18675"
                     /inference="COORDINATES: protein motif:HMM:NF004509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8936162.1"
                     /translation="MMRRSIPALLRERASLQPNRTAYTFVDYERDRAGVAVSLTWSEV
                     YRRAVNVAQELRLHGSAGDRAAILAPQGLDYVIAFLGALQAGFIAVPLSSGGDERVSS
                     AMRDASPSVVLTTRSVVSGIAECVEPKPGGRPPSVIEIDLMDLDSKKGAAARIDNSPG
                     AAYVQYTSGSTRTPAGVTVSYRNLMANFEQINAGFFTDHGGVAPPDTTLVSWLPFYHD
                     MGLHVGLVFPVLTGFHTVLMSPVSFLQQPARWMRLLAQNSHAFSAAPNFAFDLTARRA
                     SDDDLAGLDLGNVLTILNGSERVQPATLQRFTERFSRFNLHARALRPSYGMAEATLYV
                     ATREAGQPPQIVRFESEELTAGHAKRRTDGGGPPLVSYGVPRSPMVRIVDPENGIECP
                     PGTTGEIWVHGDNVATGYWNKPQETERILRATLVTPSSGTPAGPWLRTGDLGFISGGE
                     LFIVGRIKDLLIMYGRNHSPDDLEATIQSIAPGRCAAISVSDDDTERLV"
BASE COUNT          367 a          618 c          624 g          367 t
ORIGIN      
        1 ccgctttcgg cagaacgcga tgccgaccgt gttcaggtcc agtcccgtgt aggcggctgg
       61 gcgtagggtg cgcatcaggt acgaagcgcc gccgccgtgg ccgcaactga cctccagcac
      121 cttcttggcc gcaaggtcca cctgggtcgc ggtgcggtgg tagagctgga tggggaaccg
      181 gtcgggctca tcggatgccg ccagcggcag ggccatcggc ggatcctcct catatccgta
      241 attgaggaac aacacgtcgt cccggatgag caggcggctg agaaaccgat aaccgtattt
      301 gaagcgcaaa ttcaagacgc ccaacaagat tgggttgcgg ttcagccggt cgatgaggcg
      361 ttcggttggc gtgcggtgga gcgccaccag ggcagtatgt cacgtacgtg atacgccagc
      421 cgtcctctcg acgacggaaa tctccgcgcc gacctcccac ctcagctaac ttgacgatca
      481 tgatgaggcg gtcgattccg gccttgctgc gcgagcgcgc cagtctgcag cccaaccgga
      541 ccgcgtacac gtttgtggat tacgagcggg accgggcagg tgtcgcggtg agcctgacgt
      601 ggtccgaggt gtatcgacga gcggtcaacg ttgcgcagga gctcagactt cacgggtcgg
      661 ctggtgaccg cgctgcgata ttggcgccac aggggcttga ttacgtcatc gcgtttctcg
      721 gcgcgttaca ggccggattc atcgcggttc cgctgagtag cggcggcgat gaacgtgtca
      781 gctcggcgat gcgcgatgcc tcgccgtctg tcgttctcac cacccgctct gtcgtgtcag
      841 gtattgccga gtgtgtagag ccgaagcctg gtggccgccc tccatcggtt atcgagatcg
      901 atctgatgga cctcgattcg aagaagggcg ccgctgcgcg gatcgataac tcaccaggcg
      961 ctgcatacgt gcaatacaca tccggatcga cccgaacccc cgccggcgtc acggtttcct
     1021 accgcaacct gatggccaat ttcgagcaga tcaatgccgg cttcttcacc gaccacggag
     1081 gcgtcgcccc gccggacacc accttggttt cctggctgcc gttctaccac gacatgggtt
     1141 tgcatgtcgg ccttgtcttt ccggtcctga cggggtttca cacagtgctg atgagcccgg
     1201 tctcgtttct gcagcagccc gcccggtgga tgcgattgct ggcacagaac agtcacgcgt
     1261 tctcggcggc acctaatttc gccttcgact tgacagcacg aagagcatcc gacgacgacc
     1321 tggccgggct cgatctcgga aacgtgctga ccatcctcaa cggcagcgag cgggtacagc
     1381 ctgcgacact gcagcgcttc acagagcggt tctcccgctt caatcttcac gccagggcgc
     1441 tgcgaccgtc atacggaatg gcagaggcga cgttgtacgt cgcaacacgg gaagcggggc
     1501 aaccgccaca gatcgtccgt ttcgaatcgg aggaactgac cgcgggccac gccaagcggc
     1561 ggacagacgg aggcggtcca ccgctggtca gttacggcgt gccgcggtcg ccgatggtgc
     1621 gcatcgtcga tccggagaac ggaatcgagt gcccgcctgg gacgaccggt gaaatctggg
     1681 tgcacggaga caacgtcgcc accggctatt ggaacaaacc ccaagagacc gagcgcatac
     1741 tccgggcaac gctcgtcaca ccgtcttccg gcaccccagc aggcccatgg ctgagaaccg
     1801 gagatctggg cttcatctcc ggcggcgagc tgttcatcgt gggccgtatc aaggatctct
     1861 tgatcatgta cgggcgcaac cactctcccg atgacctcga ggcgacgatt cagagcatcg
     1921 cgccgggacg gtgcgcggcg atctcggttt cggatgacga caccgaaagg ctcgtc
//
LOCUS       DASVXZ010000889         2216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_972094, whole genome shotgun sequence.
ACCESSION   DASVXZ010000889 DASVXZ010000000
VERSION     DASVXZ010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_972094"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..1450
                     /locus_tag="VF788_18680"
     CDS             2..1450
                     /locus_tag="VF788_18680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose/L-arabinose isomerase family protein"
                     /protein_id="HEX8936163.1"
                     /translation="MLSFSDGRDFVHADIETFTRNVEDRIAQALEQAGHEVIRAAGPI
                     WTNTLATTEARRVADARCDLTIFNYPVWAFPHFTMLAAAATPGPLLLFSNIDPQFPGM
                     VGMLAAGGGLDQIGRPHTRVWGDAADSAVRDRVLETIRAAAAVSTLSGSTFGRIGGRP
                     MGMYTAVADTDQWMSTFGVDVEEIDQWEIVRRSATIEQSRVTAGREWLERHAGMVHYD
                     SKQLTPELLERQIRSYHAVRELIEEWNLDFSGIKGQPELTTHFTTMDVTEAFLNDPYD
                     WEGPKPTHVCATESDMDGALTMQLLKGLTGTPVLFADVRHYHADRDIWDLCNSGQHAT
                     WFAARSDDPMENLRSVHLYPEIFYFPAGGASVSFFAAPGRATFARLTRIGGRYRMHVA
                     RGEFESYDDATNEALARQSTFEWPHAFARLEVEASEFLSTFGANHIHAVPGEHVAELR
                     AVCRMLDIEWGGMGTIRTDEGRMDDGRMDTAR"
     gene            1447..>2216
                     /locus_tag="VF788_18685"
     CDS             1447..>2216
                     /locus_tag="VF788_18685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HEX8936164.1"
                     /translation="MSSLLLGVDIGTASSKGVLVRDDGTVLATATRAHEVSMPHPGWV
                     EHDAEAVWWAEFAAISRELMAGGREPLAAVGVSGIGPCLLPVASDNRPLRPAILYGVD
                     TRARVEIDELNQALGKDTILERCGSVLTSQAVGPKLAWLRANEPDTWAATRRFLMASS
                     FIVGRLTGSYVLDHHSASQCTPMYDPVEHRWIEEWSELIAPGLELPQLCWPSDVVGEA
                     QGSAVEQTGIPPGTPVVAGTIDAWAEATSVGVREPGDV"
BASE COUNT          381 a          730 c          748 g          357 t
ORIGIN      
        1 actgttgtcg ttctccgacg gacgcgactt cgtccacgcc gacatcgaga cgtttacgcg
       61 caacgtcgaa gaccgcatcg ctcaggcgct cgagcaggcc gggcacgagg tcatccgtgc
      121 ggcagggccg atctggacca acacactggc caccaccgag gcccgtcgag tcgctgacgc
      181 gcgatgcgac ctcaccatct tcaactatcc ggtgtgggcg ttcccgcact tcacgatgct
      241 cgccgcggcg gcaaccccgg gcccgctact gctgttctcc aacatcgacc cgcagttccc
      301 cgggatggtc gggatgctgg cagccggggg cgggttggac cagatcggcc ggccccacac
      361 ccgggtgtgg ggagacgcgg cagactcggc cgtgcgggac cgtgtgctgg agacaatccg
      421 ggctgcagcg gcagtatcga cgctgtcggg cagcacgttc ggtcggatcg gcggtcgccc
      481 gatgggcatg tacaccgcgg tggcggacac cgatcaatgg atgagcacct tcggggtgga
      541 cgtcgaggag atcgaccagt gggagatcgt gcgccgctcg gccaccatcg agcaatcgcg
      601 ggtcaccgct ggtcgagaat ggctggaacg gcacgccgga atggtgcact acgacagcaa
      661 gcagctgacg cctgagctgc tcgaacgtca gatccgctct taccacgctg tgcgagagct
      721 gatcgaggaa tggaacctcg acttcagcgg gatcaaggga cagcccgagc tgaccacgca
      781 cttcaccacc atggacgtca ccgaggcgtt cctcaacgac ccctacgact gggagggccc
      841 gaagccgacc cacgtgtgcg ccaccgaatc cgacatggac ggtgcgctca ccatgcagct
      901 gctcaagggc ctgaccggca ctccggtact tttcgctgac gtgcggcatt accacgccga
      961 ccgggacatt tgggacctgt gcaactccgg gcagcacgct acgtggttcg ccgcgcgcag
     1021 cgacgatccg atggagaacc tgcgctcggt gcacctctat cccgaaattt tctacttccc
     1081 ggccggcggg gcctcagtgt ctttcttcgc cgcgcccggg cgagctacct tcgcccgctt
     1141 gacccggatc ggcggccgat accggatgca cgtcgcgcgg ggcgagttcg agtcctatga
     1201 cgacgcgacg aacgaagcgc tcgctcggca gtcgaccttc gaatggcccc atgcattcgc
     1261 ccggctggag gtcgaggcca gcgagttcct gtccaccttc ggcgccaatc acatccatgc
     1321 cgtgcccggc gagcacgtcg ctgagctgcg cgcggtgtgc cggatgctcg acatcgagtg
     1381 gggcgggatg ggcacgatcc ggacggacga ggggcgaatg gacgacgggc gaatggatac
     1441 agctcggtga gttcgctgct gctcggtgtc gacatcggca ccgccagctc caagggcgta
     1501 ctggtacgcg atgatggcac cgtcctcgcc acggccaccc gagcccacga ggtgtcgatg
     1561 ccacaccccg gctgggtgga gcacgacgcg gaagcggtgt ggtgggcaga gttcgcggcg
     1621 atcagcaggg agttgatggc cgggggacgc gaaccgctcg ccgcggtcgg cgtcagtggc
     1681 atcggtccct gcctgcttcc ggtggctagc gacaatcggc cgttgcggcc ggcgatcctc
     1741 tacggcgtgg acacccgcgc tcgggtcgaa atcgatgagc tgaaccaggc gctgggcaag
     1801 gacaccattc tggagcgctg tggatcggtt cttacctcgc aagcggtcgg gcccaagctg
     1861 gcgtggctgc gcgcgaacga acccgacacc tgggcggcta cccgccgctt cctgatggcc
     1921 agcagcttca tcgtgggtcg gctcaccggc agttacgtcc tcgaccatca ctcggccagc
     1981 cagtgcaccc cgatgtatga cccggtcgaa caccgatgga tcgaggaatg gtccgaactg
     2041 attgcccccg gtctcgaact gccgcagctg tgctggcctt cggacgtggt cggtgaggcg
     2101 cagggcagcg ccgtcgagca gaccggcatc ccgcccggta caccggtggt ggccggcacg
     2161 atcgatgcgt gggcagaggc gaccagcgtc ggcgtcaggg aacccggcga cgtcat
//
LOCUS       DASVXZ010000890         5550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_972259, whole genome shotgun sequence.
ACCESSION   DASVXZ010000890 DASVXZ010000000
VERSION     DASVXZ010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5550
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_972259"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            494..1075
                     /locus_tag="VF788_18690"
     CDS             494..1075
                     /locus_tag="VF788_18690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936165.1"
                     /translation="MQDDTQRGEQPRPCRIHTDKVAIRAVLHPKGDIDGYRVGNVGFA
                     VAGPRQRHRLGYCDRNRSKPLVLSSPIDGVYPTAREALGRSLCLGASVLAVCFGVTRH
                     VQKFDFKPPSDSWMGAFKPLATFELELKSMPQFDKFDVWISGTIAKQVELSGAQARGP
                     CIPSALPDHALSRGQHRSPAGVRLGAAHERDLR"
     gene            complement(1301..2146)
                     /locus_tag="VF788_18695"
     CDS             complement(1301..2146)
                     /locus_tag="VF788_18695"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX8936166.1"
                     /translation="MVSLRKRLGVPPVVSLAAASLTPLAVAAATPLSKWRYIAVGTAY
                     MWTFKVTWQLPYETLGNSRRRVHIRYPIHIDSLLGGGVPPTVRLQRCLRDHTKVTPLD
                     RAVVGVYGSWLLPHLILGWILMRHPEFIPRAAGRLAATYHLTTPFYWLIPTAPPWWAS
                     ESAGEMNGEVQRVLRHVIRDLRNQPRSETDNAPGNPWGSMPSDHVASAAITAMALSEI
                     DIAYGVLGWSYVLLASFAVIYLGEHYLVDVLAGLAIAETVRRAEPLLSPIVSQMTHVL
                     KSTGR"
     gene            2909..3283
                     /locus_tag="VF788_18700"
     CDS             2909..3283
                     /locus_tag="VF788_18700"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX8936167.1"
                     /translation="MIDQSIPGVRVVRVAGELDMLTAPQLASCLLSQIDARGGHVVVD
                     ISKVTLLGAAGLGSLVRAREAATCHHVELHLAGVDHRAVARPLEITELRPTFSIHPSA
                     ESIIARVGGPVQLTDSAAAEAS"
     gene            3484..4101
                     /locus_tag="VF788_18705"
     CDS             3484..4101
                     /locus_tag="VF788_18705"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936168.1"
                     /translation="MPMRQTGRFVLVGQALLVAGLAVAGLVAAAGSPTGVGHVAGFSL
                     NIPHSLLLLATAGASVLAAVWSRIGRLWAMAQAALYTLVYVIGTAASTGHSQDTWLRL
                     NTPDHFLHLGLALVSGVLSPALFWPTAPGAHAPARIMPGEPPPTEQRPPRSVEEEPAE
                     TREMIAAEVAVTEGSATPEQARRVQEDAQHRADTEHRRAWKQYEE"
     gene            5097..5327
                     /locus_tag="VF788_18710"
     CDS             5097..5327
                     /locus_tag="VF788_18710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936169.1"
                     /translation="MPLSSTLRAAALVVTLGTLVQGSIGYGMTLVAAPLLSLVDPTLV
                     PVPLILLTPVHAVLRWPGTVGMPTGLESAGRR"
BASE COUNT         1053 a         1717 c         1761 g         1019 t
ORIGIN      
        1 tcggtgtctt actggcgcgg gacggccggc tcgaggaggc cctgatctgg taccgcaccg
       61 ccgccgacgc cggccacacc accgccgcca acaccttgcg cctcctgctg gaccaggaac
      121 aaacataggg ccggcccatg accgctacag ctggattcgt tgagccggcg gcgcttatca
      181 ggtgggcatg cgctcacccc accggatctc aagcagccct ccaagaaacc ctaacggtcc
      241 gcccggagac ggggtcatcc cacttccatg acctgccgcg cccacggcca gccacacggt
      301 cggttaccgg atcccacggc gtcgcagctc tgcacagtct ggtcggatcc gccagcggca
      361 gtagcggttg gcggtgacga gccgtgattg ctgtacacca ctcgattggg tgttaaatcg
      421 ggtggtggtg aaccgtgcgc ggctgcgggc cgaagtaaat gcgggagcta tgaagttatg
      481 cagcgtcgcg ggtatgcagg acgacactca acgcggtgaa caaccccgcc cgtgccggat
      541 tcacaccgac aaggtcgcga tacgcgcggt gttgcaccca aagggagata tcgatggcta
      601 tcgcgtgggc aatgttggct ttgctgtggc tggccctcgt cagcgtcatc gtctgggtta
      661 ttgcgaccgc aatcgctcga agccgttagt actctcgtct ccgattgatg gggtgtaccc
      721 cacagcgcgc gaggctcttg ggcgctcgct atgtctgggc gcatcagtgc ttgcggtgtg
      781 ttttggtgtc acacgacatg ttcaaaagtt cgacttcaaa ccgcccagcg acagctggat
      841 gggcgccttc aagccgctgg cgaccttcga gctggagctg aagagcatgc cacagtttga
      901 caagttcgat gtttggatct ccggaaccat tgcaaaacag gtggaactta gcggtgctca
      961 agctagagga ccttgcattc cgtcggcgct gcccgaccac gcgctgtccc ggggacaaca
     1021 tcgctctcca gctggtgtcc ggctcggtgc agcgcacgag cgtgatctac gataggaggc
     1081 atttactttg atcaaagtgg tggcccaggc ggggtcgaac cgccgacctt ccgattttca
     1141 gggctcggga taacactgcg ccgaataccg ttaacgtccg cgatctgcaa caacacgtcg
     1201 atccgaacac cgatgaacgt aggcgaacgt agacggatga gaccaacgat gagaccacca
     1261 gggctcggtt gcttcgcgca gtcccctcct tgtcctgtgg ctacctgcct gtagatttca
     1321 ggacgtgagt catctgactg acgatagggc ttagtaaggg ctctgcgcgt cggacggttt
     1381 cagcgatggc aagtccagcg agaacgtcga cgaggtaatg ctcgccgaga tagatgacgg
     1441 cgaaactggc gagcagcacg taggaccagc ccagcacacc gtatgcaata tcgatctccg
     1501 ataaagccat ggcggtgatt gctgctgagg cgacgtgatc ggagggcatg gacccccacg
     1561 ggttgcctgg agcgttatcg gtctcgcttc ggggttggtt gcgcaggtcc cggatcacat
     1621 gtcgtagcac acgctggact tcaccgttca tttcccctgc tgactcggag gcccaccacg
     1681 gcggcgcagt gggaattaac cagtaaaagg gtgtcgtgag gtgataggtg gcggccagtc
     1741 gcccggccgc ccggggaatg aactctgggt ggcgcatcaa gatccagccc aggatgagat
     1801 ggggaagcaa ccatgagccg tagaccccaa caacagccct gtcaagtggg gtcacttttg
     1861 tgtgatcgcg caggcaccgc tgcaggcgca cggtgggcgg cacaccccca ccgagcaggc
     1921 tatcgatgtg aatcgggtag cggatatgga cacggcgtcg actatttccc agcgtttcat
     1981 acggcaattg ccaggtcacc ttaaacgtcc acatatacgc tgtccccacg gcgatgtagc
     2041 gccacttact aagcggtgtg gccgcagcca ctgccagcgg agtcagcgac gcagccgcaa
     2101 gcgacaccac aggcggcacg ccgagccgct tgcgcaggct gaccacagcg acagccaccg
     2161 gtaccccagc agcaacaagc caccgcgcgg gcggccaggc cctgctcacc cggcgaaggt
     2221 gcgacagggc aggttgcaca cgagcggcca accgcaccga ccgctggtct ggctcaggtc
     2281 ccttccgccg atacccagcc gatcgtctgc gccgaggatg tttcgccatg gatgcatact
     2341 gtctgcggtg atgaccaagc gccaacggtg agctactgaa ctgccggaca gcacaaggca
     2401 ctgacgcagg tgtgggggtg ctgagggtcc accgctacgc cctgaccccc gacggcaacg
     2461 agtcgcgatc ttttacccca aggtccacaa ccgacttttg cgaccactac tcgccgctca
     2521 caacccaccc gccccactcc tcctacgacg agccctacga gtgatcaacc aacacgtcga
     2581 tgactgcaag tgtttctcaa cgaagctccg caccgggacg atgggatcac cgatgatggg
     2641 agccgcggct tgtgggctga cgaaatgcct atggtgaggt tgactcagta gcttcggttg
     2701 cgatctttag gtctgtggag gacgctggac acaggtcgaa agcacttcga gtgcgccaac
     2761 atcaagtggc gtcccgtttt cgatgcaacg ctcgccatag ggactcgggc tcccgaggaa
     2821 gctggcatcg acgatgcagg atacgtcaat ttctgtggtt aagaatcagg gatcagcggg
     2881 atgccgtggc gccgaagcac ttcgcgtcgt gatcgatcag tcgattcccg gcgtgcgggt
     2941 ggtgcgggtg gccggcgagc tggatatgct gaccgcgccg caactggctt cttgcctgct
     3001 cagtcagatc gatgcacgtg gcggacacgt cgtggtggac atcagcaagg tcaccttgct
     3061 cggggcggcg ggcctaggaa gtctggtcag ggcgcgggag gccgccacct gtcatcacgt
     3121 cgagttgcac ctagctggtg tcgaccatcg agccgtcgcc cgtcccttgg agatcaccga
     3181 gctgcgccct acgtttagca ttcacccctc ggccgaatcg atcattgccc gtgttggcgg
     3241 cccagtccag ctaaccgatt ccgcggcggc cgaggcgtcc tagcagtctg cagtgtgtgg
     3301 tgcacatgat cttacaatgc tggtgtcctc gttgatccgt cgcgggatga cggcttccgg
     3361 gtcggctcat gtggtacgca accgccgctg agtcccacag cgaatcgtgg cggccgggtg
     3421 taggcggtcc tcatgacggg aacccatagt cgaatcacgt tgccgtcagc gggagatctt
     3481 atgatgccga tgcgtcagac tggccggttt gttctggtag ggcaggcgct gctggtggcc
     3541 ggcctggccg tagctggttt ggtggccgcg gcaggctcac cgaccggcgt gggccatgtc
     3601 gctggctttt cgttgaacat cccgcatagt ctgctcctgt tggccaccgc cggcgccagt
     3661 gtgctcgccg cggtgtggag ccggatcggc cggctttggg ccatggccca ggcagctctt
     3721 tacaccttgg tatacgttat cggcaccgca gccagcaccg ggcattcgca agacacctgg
     3781 ctgagattga atacgccaga tcacttcctg cacctgggtt tggcattggt aagcggcgtg
     3841 ctgagcccgg cgttgttctg gcccacggca cccggtgccc acgcgccggc gaggattatg
     3901 cccggggaac caccgcctac cgagcaacgg cccccgagga gcgtggagga ggaacctgca
     3961 gagacccggg agatgatcgc cgcggaagtg gccgtcaccg agggcagcgc cacgccggag
     4021 caggcgcgcc gagtccagga agatgcgcag caccgcgctg acaccgaaca tcgccgcgca
     4081 tggaaacaat acgaagagta aacgctgatc gacccgccga ggacgggccc ctgccatgca
     4141 acgccggcac ccccgccgca ccgcgtccgc ggggggctgt cggatgtcgg tccagtcaac
     4201 gtatggatac cgcccccagc cgaaggtgct ccaaagcctg cccagggaga tcacgcgggc
     4261 tcaacgaacc atttctagtt cgcatattaa tgctagccaa aattccaata gcggtccgtt
     4321 ttcgacgagg aggggcaaag agtgacgctg gccgacaacg gagacggaac acgaaggaaa
     4381 agatcaaaaa aatccctgtc ttcaaagcgc atcagcccga acaccccggc attctcggga
     4441 gccgtgtgct ggtgtcgaga aagtggtcca acagactctg aacgtgtcac tatgtaccca
     4501 caactttaag ttatgggcag tcgcgcaccc tctgaccagc taccggaagg tgggcttctc
     4561 caccttggtc aggtacagga aggtggagtc ttcccccttt ctggcttagc gagccgggtc
     4621 atccagcccg gcggccacac agagttcgac acggcggtcg aagccactcg ggcgtgcccg
     4681 aagtcgaccc gctgacaaac tgggggcccc cgaagtaggc cacgccggtg aacagggcac
     4741 ccatgaagtt ggcgtgaccg agctgacact ccgccaggga gaagtccggc agaagcgccc
     4801 cggcgagggt cagtcggatt ccaggccgtg ccagtgttgc atcgacaatg gattggcgat
     4861 gctcgacggt gcgccaggcg ctctagggcg tacaggccag ccatccgcac cgagacctgg
     4921 ccggagccaa gcagttcggc ggccttggtg taaagctcgg tgatgcgccg ctcggtggcg
     4981 tcgcggtcgg tgcgcaccag agtcagctcg gtgtagcgct gccgacgggc ggtcggcagc
     5041 agcgccatcg cgccgccggt accgatcacc aaagtccccg cggtgcggat cgcaccatgc
     5101 cactctcaag cacacttcgc gccgccgccc tggtggtgac gctcggtacg ctggtgcaag
     5161 gcagcatcgg atacggcatg acgctcgtgg cagcgccctt gctgtccctg gtcgacccca
     5221 cgttggtacc tgtgccgttg atcttactga cacccgtgca cgccgtgctt cggtggcccg
     5281 ggacggtcgg catgccgact ggcctggaat cggctgggcg acgctaggtc ggctacctgg
     5341 cacgggaatt ggggtgctcg ccgtggtgtt gcttcgcagt gattgttcag ctgcctcatc
     5401 gggctctgcg tgcttgctca catggtgctc gcgtgcctca ggtggcagcc ctgtcttcga
     5461 ccaagctcgc tactgctggc agggatcgct agtggggtag gcggcaccgc ggcatcgatc
     5521 ggtggccctc tcattgcgtt gctctaccag
//
LOCUS       DASVXZ010000891         5135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1403149, whole genome shotgun sequence.
ACCESSION   DASVXZ010000891 DASVXZ010000000
VERSION     DASVXZ010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5135
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1403149"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1249)
                     /gene="murJ"
                     /locus_tag="VF788_18715"
     CDS             complement(<1..1249)
                     /gene="murJ"
                     /locus_tag="VF788_18715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEX8936170.1"
                     /translation="MPPNNQLPRAAWSERSLAHASGSMAVATVISRVTGLMAKLLLAA
                     ALGFGLLNDSYNIANELPNMVYELLLGGVLSSVAIPVLVRAQRTDPDGGHAYAQRLLT
                     VGTVALMVGTVAAVAAAPLLIRLSVTSGPHASPALATAFAYLLLPEIMFYGLAALVGA
                     VLNSRGIFGPPAWAPVANNLVLIAVITVYAMTPGRISLQPSLMSEAKLWVLGLGTTLG
                     IVVQAGVLLPALRRSGFRWQWRWGWDPRLSAFGGLAGWVFLYVLAGQIGLVITYRIAS
                     ATAGGGVSTYAYAWILLIVPYGVLGNSVLTALMPRISRATADGNVKGVVADLSLGTRI
                     SALLLLPISALFTVAGGQIATVLFSYGRSDLAQADRLGETLAASAFGLLPYAVVLLQL
                     RVFYALGDARTPTVIMALMVAGKI"
     gene            complement(1300..1560)
                     /locus_tag="VF788_18720"
     CDS             complement(1300..1560)
                     /locus_tag="VF788_18720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936171.1"
                     /translation="MPDTRIAVAQEAEQFAAHRMAAAAAAKAKRMWPNVIGDVLADEV
                     MALMNLPAWLRSQTRTQLLIDAILSLPERAAGSCDDDRPRAA"
     gene            1940..2887
                     /locus_tag="VF788_18725"
     CDS             1940..2887
                     /locus_tag="VF788_18725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8936172.1"
                     /translation="MPTSSSDAIKGTAAGVPYTALPPRDNAAHAPLVLIWHLMDPPCT
                     DAAMAAALPMAALPAWRVYLGLPLTGRRLPTGGFDELMRLGHADAVLNLFDPILSQAI
                     DEAPVAAAAVRTELGIAEGPIGVAGGSLGAAVAAGVIAGRALPVAAAALVNPAVRVAG
                     AVAATERRYAMRYEWTDAACAIADRFDFLRRAAEIATTAAPLLLVSGENDDPEFRADA
                     EALRRELACCYGEHSHVQWHSVPGMPHHLAEPPGIAPAPQNEHAVAVDAAVTSWFAEQ
                     LCNSPPASARARAEVTGASQRMRAVNVSGRPPSAAGSSG"
     gene            complement(2847..4316)
                     /locus_tag="VF788_18730"
     CDS             complement(2847..4316)
                     /locus_tag="VF788_18730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018683011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HEX8936173.1"
                     /translation="MSGSTMIDPRSDRAFFGHPRGLANLFGVEVWERFSFYGMLASLT
                     LYLYYEATGSSPGLGLPKTTATSLVGAYGGLVYVSTIVGCWVADRVLGAERTLFYSAV
                     LVMIGHIGLAILPGFAGLGVGLACVALGSGGVKGNATAVVGTLYADNDDRRDAGFSIF
                     YMGINIGALVGPLLTGLTRSTLGFHFAFGVAAIGMAIGLIQYTLGRKNLGTEAGAVPN
                     PLPGSRWPMVVGGAMVAVAVVIFLVLTEVITATRLSTIVAVVCGVAAATYFVVILASS
                     KITTVERSRVLSFIPLFIANAAFWSLFQQYFTVVTIYADRRVDKTFFGWEMPTEWIIS
                     FDPVFIILLAPVFALLWVKLGPRQPSTPIKFALGNATIGLAFLLFLPWASGIGPSTPL
                     MAVAFIVLVFAIGELLISPVGLSLATKISPRVFRSQTVALYFLSIALGTAMSGSLAGY
                     YSPTHEAAYFGGLGVVLIIIGAIVGALSPMIQRLMAGVR"
     gene            4573..5115
                     /locus_tag="VF788_18735"
     CDS             4573..5115
                     /locus_tag="VF788_18735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEX8936174.1"
                     /translation="MAEQTAFGLHGDGTLTESNPGATAVTYNPALAPAGARMKVTMTP
                     SGETTIAELTVSGLQPNRGYAVIAHVNACGGVPGGEGPHYQNRIDPAATNVAPSRNPE
                     YANPNNEIWLDVRTDSSGSGTSRTTVPFLFTDRGPGSVVVHDAMQTATGPGQAGNAGD
                     RVACLTLSAATPKGADPRGS"
BASE COUNT          988 a         1703 c         1630 g          814 t
ORIGIN      
        1 cgatcttccc agcgaccatc aatgccatga tcaccgtggg agtgcgggcg tcacccaacg
       61 cgtagaacac tcgcagctgc agcagtacca cggcgtaggg caacaagccg aacgccgagg
      121 cggccagggt ctcacccaga cgatcggcct gggcgagatc ggagcggccg taggagaaca
      181 gcacggtggc gatctgccca ccggctaccg tgaacagggc cgagatgggc agcaggagca
      241 gcgctgagat gcgggtgccc aatgacaggt cggcgaccac gcctttgacg ttcccgtcgg
      301 cagtagcccg gctgatccgc ggcatcagcg cggtgagcac ggagttgccc agcacgccat
      361 agggcacgat cagcaggatc caggcatacg cgtaggtcga gacgccaccg cccgcggtgg
      421 ccgaggcgat ccggtaggtg atcaccagtc cgatctgacc ggccagcaca tagaggaaca
      481 cccatccggc caggccgccg aaagcggata accgcggatc ccagccccac cgccattgcc
      541 accggaaccc cgaccggcgc agcgccggaa gcagaacccc cgcctgcacg acgattccca
      601 gcgttgtgcc cagccccagc acccacagct tggcctcact catcaggctg ggctgcaggc
      661 tgatccgacc cggggtcatc gcgtagaccg tgatcaccgc gatgagcacc agattgttgg
      721 ccaccggcgc ccaggctggc ggaccgaata tgccgcggct gttgagtacc gcgccgacca
      781 gcgcggccag cccgtagaac atgatctccg gcagcagcag gtaggcgaac gccgtggcca
      841 gcgcggggct ggcgtgcggt ccgctggtca ccgacagccg gatgagcagt ggcgccgcgg
      901 ccaccgcggc cactgtgccc accatcaggg cgaccgtgcc taccgtgagc agccgctgtg
      961 cgtaggcgtg gcccccgtca ggatcggtgc gctgggcacg taccagaacc gggatcgcga
     1021 cgctggacag caccccgccc agcagcagct cgtataccat gttcggtaac tcgttggcga
     1081 tgttgtagga gtcgttgagc aggccgaatc ccagtgccgc cgccagcaac agctttgcca
     1141 tcagccccgt cacccggctg atcaccgtgg ccaccgccat cgaccccgac gcatgcgcca
     1201 acgaccgttc cgaccacgcc gctcggggca actggttgtt cggcggcacg ccgctcagca
     1261 caccaccccg actcccgatc gtccgaggcg gggcccgcac taggcggcac gtggccgatc
     1321 gtcatcgcag gatcctgctg ccctctccgg gaggctgagg atcgcatcga tgagcagctg
     1381 cgtgcgggtt tgtgagcgca accatgccgg caggttcatc agcgccatga cctcgtcagc
     1441 cagcacatcg ccgatcacat tcggccacat gcgcttggct ttcgcggcgg cggcggcggc
     1501 catccggtga gcagcgaact gctcggcttc ctgggcgact gcgattcgcg tgtcaggcat
     1561 cgaaagcccc cttggtccgc gtcttatgcc cggcctcgac acagtccaac gagcgtgggg
     1621 tggatccaga cgcgatggag tcaagtttgc gcctgcgtaa ggattcgcag accggcacac
     1681 actggggtgt tgtgacaggt tgatggcgtc cctgcgagca acgctgctgg acgagttccg
     1741 gacctcgggg cgcagttact ggtgccagcg ccgacccaga gcccaccggc ctgctcgtcg
     1801 tgaacatcat accggtaaag agtgccggca ccacgccgtg cgtacatcga ttcccgctag
     1861 gtgagctgcg tgggagtaag ggactcagcc gaggcgaacg cccggcgaga atgtcggtgg
     1921 tcggtgcttg catagggcca tgccgacttc atcgagtgac gcgatcaagg gcaccgccgc
     1981 tggtgttccg tacaccgccc tcccgccccg cgacaacgcg gcgcatgcgc cgctggtcct
     2041 catctggcat ctcatggatc ccccatgtac cgacgcggcg atggcagcgg cgctgccgat
     2101 ggcggcgctg cccgcctggc gggtatacct cggtctgccc ctcaccggac gccggctacc
     2161 gaccggtggg ttcgatgagc tgatgcggct tggccatgcc gacgcggtgc tgaacctgtt
     2221 cgatccgatc ctgtcccagg cgatcgatga agccccggtt gcggcggccg cggtgcgaac
     2281 cgaactcggc atcgcggagg gtcctattgg ggtggccggc ggatcgctgg gagccgcagt
     2341 cgcagcgggt gtgattgccg gccgtgccct tccggtggcg gccgcggcgc tggtcaaccc
     2401 ggcggtacgg gtggccggag cggtcgcggc caccgagcgg cgttatgcaa tgcggtacga
     2461 gtggaccgac gccgcgtgcg ccattgccga ccggttcgac ttcctccgcc gtgctgcgga
     2521 gatcgccact acggcagcac cgctgcttct ggtcagcggc gagaacgacg acccggagtt
     2581 tcgcgccgac gccgaggcac tgaggcgcga actcgcctgc tgttatgggg agcactcaca
     2641 tgtccagtgg cacagcgtcc ctggtatgcc gcatcacctg gcggagcccc ccggcatcgc
     2701 cccggcaccg cagaatgagc acgcggttgc cgtcgatgcc gccgtcacat cgtggtttgc
     2761 cgaacagcta tgcaattcgc caccggcttc ggcgcgagcc agggcggagg tgaccggggc
     2821 cagccaacgc atgcgagccg tgaacgtcag cggacgcccg ccatcagccg ctggatcatc
     2881 gggctgagcg cgccgacgat cgctccgata atgattaaca ccacgcccag gccgccgaag
     2941 taggctgcct catgcgttgg actgtagtaa ccggcgagcg atccggacat cgctgtgccc
     3001 agagcgatgg acaggaagta caacgccact gtctggctcc gaaacaccct cggcgagatt
     3061 ttggtggcca gcgataatcc gactggtgag atcagcagtt ctccgattgc gaagaccagc
     3121 acgataaaag cgaccgccat gagcggagtg ctcggtccga taccactggc ccagggtagg
     3181 aacagcagga acgccaagcc gatcgtggcg ttgccgagcg cgaacttgat cggtgtcgag
     3241 ggctgtcgtg gcccgagctt cacccagagc agggcaaaca cgggcgccaa caggataatg
     3301 aacaccgggt cgaacgatat tatccattcc gtgggcattt cccatccaaa gaaagtcttg
     3361 tcgactcgcc gatcggcata gatcgtcacc accgtgaagt actgctgaaa cagcgaccag
     3421 aacgccgcgt tggcaatgaa caaggggatg aatgacagca cccggctccg ctccaccgtg
     3481 gtgatcttcg agctcgccag gatgaccacg aaatacgttg ccgcagctac gccgcatact
     3541 accgccacaa tggtggacaa gcgcgtcgcc gtaatcacct cggtcagcac cagaaagatc
     3601 accacggcca cggcgaccat ggcgcctccc accaccatgg gccagcggga gccgggcagt
     3661 gggttgggaa cggcacccgc ctccgtgccc agattttttc gcccgagggt gtactggatc
     3721 agaccgatcg ccatgccgat cgcggccact ccaaacgcga agtggaaacc gagcgtgctt
     3781 cgggtgaggc cggtgagcag tggaccgact aacgcgccga tgttgattcc catgtagaaa
     3841 atcgaaaagc cggcgtctct tcggtcgtca ttgtccgcgt acagggttcc gaccaccgca
     3901 gtcgcgttgc ctttcactcc accgctaccc agggcgacgc acgctaatcc caccccgagg
     3961 ccggcgaaac ccggcaggat cgccaacccg atgtgcccga tcatcacgag aaccgcgctg
     4021 tagaagaggg ttcgctcagc gcccagcacc cgatcggcga cccagcaccc gacgatggtc
     4081 gagacgtaga ccaacccgcc gtaggcaccg accaggctgg tggccgttgt cttcggcaac
     4141 cccagacccg ggctactgcc cgtggcctcg tagtacaggt acagcgtcag ggaggcgagc
     4201 atcccgtaga aggagaagcg ctcccacacc tccacgccga aaaggttggc cagtccgcgg
     4261 ggatggccga agaacgcacg gtccgaacgg gggtcgatca tggtgctgcc gctcatgtgg
     4321 gcaactctgc cagcctgagt cgttttttca ctgatcgagt agttcctctg gccatgagca
     4381 tgccgaggaa ggcattatac cctgatgagg ggacatacga agaatgatca atatcaccca
     4441 gagtgttcaa atgtggcagt atgcgccgga caagggaccg ttgcccggtc aatccgccga
     4501 cggctcacac tggctatggt cgctgctgtc ctgacatccg caccagcggc atgcgcttat
     4561 aagggcctta gcatggccga gcaaactgcg ttcggcctcc atggtgatgg cacactcact
     4621 gagtccaacc cgggtgccac agcggtcacg tacaacccgg cattggcacc ggcgggtgcg
     4681 cggatgaaag tcaccatgac tccctcgggc gagaccacca tcgccgagtt aacagtctcc
     4741 gggctacagc cgaaccgcgg ttacgcggtg atcgcgcatg tcaatgcctg tggtggtgtc
     4801 cccggcgggg aagggccgca ctaccagaac cgaatcgatc ccgccgctac gaacgtcgcg
     4861 ccgtcgagga atccggaata cgccaatccg aataacgaga tctggcttga cgtacgtacc
     4921 gactcgtccg gttcaggtac atcgcgcacc actgtgccct tcctgttcac cgaccgagga
     4981 ccgggatcgg tcgtggtgca tgatgcgatg cagaccgcta cgggcccggg ccaggcagga
     5041 aacgcgggtg accgggtcgc ctgtctcaca ttgtcagccg cgacgcctaa gggcgctgac
     5101 ccgcgaggtt cctgattcgc tcaactcagc tatcg
//
LOCUS       DASVXZ010000892         7178 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_613874, whole genome shotgun sequence.
ACCESSION   DASVXZ010000892 DASVXZ010000000
VERSION     DASVXZ010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7178
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613874"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..265)
                     /locus_tag="VF788_18740"
                     /pseudo
     CDS             complement(1..265)
                     /locus_tag="VF788_18740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321776.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
     gene            complement(252..1214)
                     /locus_tag="VF788_18745"
     CDS             complement(252..1214)
                     /locus_tag="VF788_18745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX8936175.1"
                     /translation="MTLSASAEHLGMVHEAAFYSSDEEFLGVIVPFLQGGLEAGAPTV
                     VALGEQNTELVRSAMPDTSHLSFMHDQYLRPASVIKSVQQLLTGHLADGAREIRILGE
                     VPQPGVGVPWEWWARYEATVNHAFDEFPLWALCPYDSRITCSEVLDDVARTHPYLATA
                     DGRHVLNDRYTRPEVFLTQPRPTHPDPLEASPPLIDLIDPMPLAARQAVREISPTTRL
                     SATDVEGLVVGVCEAVTNAIHHGRPPVQLRLWADLDRIVVTVTDHGAGPTDPFVGLLP
                     AVTAPAGGLGLWLTHQLCSLVTLDRSPEGFTIRLIGTRTVQDRQ"
     gene            complement(1211..2047)
                     /locus_tag="VF788_18750"
     CDS             complement(1211..2047)
                     /locus_tag="VF788_18750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015102682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX8936176.1"
                     /translation="MTGVIEDARGLGLHDHVCWAFDDQDDLRCRVREFLAEGLELGQR
                     VWYVAPGDVETLADDIRDLDGMDLALRVGAAHVVSVDTAYPVGTVIEPAAQVQAFVTA
                     ATQAVTAGFTGLRVAADTTPLVRTSAQLDAFARYEYLVDRCIASQPLSGMCGYNRVEL
                     GEEVIAQLACLHPNINGGTAQFRLHAWDQAAASLNGELDMTTVELLSLALQRADLQPH
                     GDELVIDAAGLTYIDHRALLMLAEHTRRAHATIVLRTAWPGAAPLVELLGLREVRVER
                     PE"
     gene            complement(3779..4135)
                     /locus_tag="VF788_18755"
     CDS             complement(3779..4135)
                     /locus_tag="VF788_18755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsr2 family protein"
                     /protein_id="HEX8936177.1"
                     /translation="MVQKIITEFIDDIDGSPAERTFTFAVDGTTYEIDLSAENIAGFK
                     SVIGGFIESARKVKGSRSSNGRHIHNARVNGGGQSREQTRAVREWARKHGHNISNRGR
                     IPSSIQQAFDQAHVAA"
     gene            complement(4587..6041)
                     /locus_tag="VF788_18760"
     CDS             complement(4587..6041)
                     /locus_tag="VF788_18760"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018680494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004351 - glutamate decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006540 - glutamate decarboxylation to
                     succinate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HEX8936178.1"
                     /translation="MPLSHPSNRRRQGRPDLSVNPVFTREPVKVPRNEFPATGIDPDI
                     AYQIVHDELMLDGNARLNLATFVTTWMEPQVTTLMTESFDKNMIDKDEYPRTADLELR
                     CVRMLAGLWHARDVDEPIGCSTTGSSEACMLAGLALKRRWQHARRAAGKSTDRPNIVM
                     GVNVQICWEKFANYWDVEPRLVLMEGNRFHLSPQEAVVRCDDNTIGVVTILGSTFDGS
                     YEPVADICAALDDLEERAGLDIQVHVDGASGALIAPFCDPHLKWDFQLPRVASINVSG
                     HKYGLVYPGVGWVVWRDSTALPEDLVFRVNYLGGNMPTFALNFSRPGSQVIAQYYNFI
                     RLGFQGYQRVGQYCREVATSLAAQIADLGPFQLLTDGTQLPVFAFTLHTRITAFSVFD
                     VSAALRQSGWLVPAYTFPDNRTDLAVLRMVVRNGFTHDLADLLMDDLRRALPRLGQQS
                     VPVHGAESSSFAHGAGSPKAGRRSQRNHRRGPPD"
     gene            6989..>7178
                     /locus_tag="VF788_18765"
     CDS             6989..>7178
                     /locus_tag="VF788_18765"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX8936179.1"
                     /translation="MENHSYNEVIGNSSAPYINSLANGGAKFTQSFAVTHPSQPNYLA
                     LFSGSTQGLTNDSCPHTYS"
BASE COUNT         1395 a         2254 c         2146 g         1383 t
ORIGIN      
        1 tcggtgacgc tgaggtcgcc cgacgcagta gcgccatcgc gcgcttgatg cgccgcgttg
       61 agctcgaagt tgccctcggc gccggccatg gtcaccgcga cgtcggaggc gatgatctgg
      121 atggcgacca tcagcatggc ctcggcctgg gtcggattaa ccgtgccggg cctgatcgat
      181 gaccccggct cgttcgatgg caagacagct cgtgaatgcc ggtgcggggg ccgaaaccca
      241 gccagcgcag gtcattgtcg atcttgaacc gttcgggtac cgatgagtcg aatggtgaaa
      301 ccttcggggg atctgtcgag ggtgacgagg ctgcacagtt gatgtgtcag ccacagaccc
      361 aacccccctg ctggtgctgt cacggcaggg agcagcccga cgaaagggtc agtaggccca
      421 gcaccgtggt cggtgaccgt caccacgatg cgatctaagt cggcccagag acgcagctgg
      481 actggtggac ggccgtgatg gatcgcgttg gtgactgcct cgcatacccc gactaccaag
      541 ccttcgacgt cggtggcgct caggcgcgtg gtggggctga tttcgcgcac ggcttggcga
      601 gcggccagag gcatcgggtc aataaggtcg atgaggggtg gggaggcttc cagcggatcg
      661 ggatgagtcg gccgtggttg ggtcaggaac acctccgggc gggtgtagcg atcgttgagg
      721 acgtgacggc catcagcggt cgccagatag gggtgggtcc gggcgacatc gtcgagtacc
      781 tcgctgcagg tgatgcgact gtcgtagggg catagtgccc acagcgggaa ctcatcgaag
      841 gcatggttca cggtggcttc gtaacgtgcc caccactccc acggcactcc cacgcccggc
      901 tgcggcacct caccgaggat gcggatctcc cgtgccccgt ccgcgaggtg tccggtcaat
      961 aactgctgaa ctgacttgat gacgctggct ggccggaggt actggtcgtg catgaacgac
     1021 aggtgcgatg tatccggcat cgccgagcgg acgagctcgg tgttctgctc cccaagagcc
     1081 accacggtcg gcgcaccggc ttccaagcca ccttgcagaa acgggacgat gacgcccaag
     1141 aactcctcat ccgagctgta gaaggcagcc tcgtgcacca taccgagatg ctccgcggat
     1201 gctgacagcg tcattccggc cgctccaccc gcacctctcg taggccgaga agctcgacca
     1261 acggtgccgc gcctggccag gcggtccgca gcacgattgt cgcgtgggcg cgccgggtgt
     1321 gctcggccag cataagcaga gcgcgatgat caatgtacgt gagaccggct gcatcgatca
     1381 ccaactcatc accgtgaggc tgcaaatcag cgcgctgcaa agccagagac aacagctcga
     1441 cggtggtcat gtccagctcc ccgttgagtg aagccgcggc ctgatcccag gcgtgcaacc
     1501 gaaactgcgc cgtgccaccg ttgatattcg gatgcaagca cgccaactgg gcgatcacct
     1561 cctcgcctag ctccacgcgg ttgtagccgc acatcccaga caacggttgg ctagcgatgc
     1621 agcgatcaac caggtactca tagcgggcga acgcgtccag ctgggcggac gtacggacca
     1681 gcggagtggt gtccgcagcg acccgcagac ccgtgaaccc tgccgtcacg gcctgcgttg
     1741 ctgctgtcac gaaggcttgc acctgggcag ccggctcaat gaccgtaccc accgggtaag
     1801 cggtatccac cgagacgaca tgcgcggcac ccacccgcaa agctaggtcc atcccatcaa
     1861 gatcacgaat atcatcggcc aacgtctcaa catcaccggg cgcgacgtac caaactcgct
     1921 ggcccagctc aagaccctcc gcgagaaact cgcgcacccg gcaccgaaga tcatcctgat
     1981 cgtcaaaagc ccagcacacg tgatcgtgca gacccaaacc acgagcatcc tcgatcactc
     2041 cggtcatccg cacccaatag aagatacagg acggcgaccc cgtactcccc tatccgacct
     2101 atccgaggtc gcccctccag ctaggaaacc gcctacaccg ataaaacggg atacccctct
     2161 gtcttcctgc ggtggttcag cgccctgcga cttcggccgt gcgtgtccct tctccaggtc
     2221 accagggatc aaccacggtc actcacgtcg attccccacc catacccgcc gatcagcatt
     2281 agctgctcag gaaattgatc gctacccgat gttcctggtt ggccatgctg gttcgattcc
     2341 agtcacccgc tccacatcct ccacgcgcac aaacggcggc tcttatcgat caggagatgg
     2401 gccgacactg ctgttcatcg tccgtccctc ctgtcttgcg tcaggccgac gcacatcatg
     2461 ggccatgctg taccggtgcc accgggggtc agtacgtcat tgcctgtacc ggcacagttg
     2521 cacacacagt aaccggtagt cgcagcggcc tcaccgagtt gacagtgcgg gtcgatgggc
     2581 caaaacggtc gaagtactgc tcattcgagg gccatcgctc aactgcacct agcacgatga
     2641 cgtaatgtta acgagacatt gcgggattcg tgaaccgctg agcgtaccga cagtgcgttg
     2701 gcttaccagc agggaggcca caccatgaag tgtcaccttg cccagttgcg cgtcagcctt
     2761 gctgctatat gcgcactact gctgaccctg ctcctgccca taacaacctt cgcttacggg
     2821 gagagtattt cactcggccc gacgcaggga ccaccagaga ccgagatggc agtcacgggt
     2881 tcggggtttg gatcgaacta cgatgtgccg atcgacttca gtgagtccac gagctcagtt
     2941 gtcaccgccc atgtcaacta caatggtgcc ttcccgactc gcttgaccat tcctgcaagc
     3001 gtcgtgctca ctccggcaaa gggaccaccc ggaacggtga cgatcgcaga cggtagcgga
     3061 ttcactccca accaaccagt cgcggttacc cagtcgggag ggccggaaat taccggaggc
     3121 ggcgcgacgg tccgagccga tcagtccggc acggttagta tgagcttcca tatagcagaa
     3181 cagacacggc ctggtgttat cactgtaacg ttcacgcaag ggggtaacac agcgactgcg
     3241 cagtttcggg tgacgccctc atcctcgggc actggcggcg ctctgacgca acccatcaag
     3301 ggcaccatcg acgaattctc acaatggctg aatgcttgcg taaacggtcg attcaacata
     3361 cctgtatgta ccggatgagc tgctcgtcgt caacttgttc tcacgcccga cgagctcgcc
     3421 accgtcggcc cgatgagcta atagtcactg cctgccacct cgccgagcag tacgccgatc
     3481 atcctattga gggccatcac attcgactga aggccccgcc gcgagcaatg cgtggattga
     3541 aaaactgcgc tcagcgcgag tggtcagcgc agcgcacgtc tttgtgtcaa gaatctccgc
     3601 ctcggcgagt aggagtcggc gtcgatgtcc atccgaggca tcagcttccg ggggcaggaa
     3661 ccaagcgagc gacgcgctcc gcctagcatc tgcatgaact gttgcatgga cggcgcggag
     3721 gtgagttacg gcgggctgtt cggtcccgcc gcaactcacc tcgattgtgg gttatcgact
     3781 aagcggctac gtgcgcctga tcgaacgcct gctggatcga tgacgggatc ctgccccgat
     3841 tgctgatgtt gtggccgtgc ttgcgggccc actcccgtac agctcgggtt tgctcacggg
     3901 actgcccacc gccattaacc ctggcgttat gaatgtggcg accgttgctg cttctactgc
     3961 ccttgacctt ccgagcactt tcgatgaacc caccgatgac agacttgaac cctgcgatgt
     4021 tctcagcgga taagtcgatc tcgtaggtgg tgccatcgac agcgaaggtg aatgtccgct
     4081 cggcgggtga tccgtcgatg tcgtcgatga actcagtgat tattttctgc accatgttgg
     4141 gggttctctc ctcgaaacac tatgtctggg gttaccgcgc gaccgggcgc ccgtactctg
     4201 cggtacccct gttctatcac aacgcgcaca ccaggtgtta attccccacc gttgccggct
     4261 gcgtggtgcc ctgcggctcg tgcaatgccg gctgctcgca aaggggaagc tcgtacacca
     4321 cctccgggga cgcaacgccc ggctcctctt gagcgacgtc tcaactgtgc ctgggtgaac
     4381 gcgtcgacgg gcacgatcgc cgggtgcgcg ggccgctggg aactcacgat gtgagagccg
     4441 gatattggat cgacagaatc ggaggacatg accagttgcc acatcatcgg cgtcgagcaa
     4501 catttcgtgt tttgtccatc gtccgaagaa cgctatccat gtagcgggga tttccaggat
     4561 cgctcgcgca gccgagaccg ctaccactag tcgggaggac cgcgccggtg attgcgctgt
     4621 gatcgtctac ccgctttcgg cgagccggca ccgtgcgcga aggagctaga ttccgcgccg
     4681 tggacgggca ctgactgctg tcccagccgg ggcagcgcgc gccgcaggtc gtccatcagc
     4741 agatcggcga ggtcatgggt gaaaccattg cgcacgacca tgcggagtac cgcaaggtcg
     4801 gtgcggttgt cggggaaggt gtaggccggc accagccatc cgctctgccg cagcgcggct
     4861 gatacgtcga atacggaaaa cgcggtgatc cgggtgtgca gggtgaaggc gaacaccggc
     4921 aactgggtgc cgtcggtgag cagttggaac ggtccaaggt cggcaatttg cgcggccagg
     4981 gaggtcgcga cctcgcggca gtattgccct acccgctggt agccctggaa gcccagccgg
     5041 atgaagttgt agtactgggc gatgacctgc gagccggggc gggagaagtt caacgcgaag
     5101 gttggcatgt tgcctcccag gtagttcacc cggaagacga gatcttcggg cagcgcggtg
     5161 ctgtcgcgcc acaccaccca gcccacgccc ggatacacca gtccgtattt gtgaccggag
     5221 acgttgatcg aggcgactct ggggagctgg aagtcccact ttaggtgcgg gtcgcagaac
     5281 ggggcgatca gtgcgccgga cgcgccgtcc acgtgtacct ggatgtccag gccagcgcgc
     5341 tcctccagat cgtccagtgc ggcacagatg tcggcgaccg gctcatagct gccgtcgaaa
     5401 gtagagccca ggatcgtcac cacgccgatg gtgttgtcgt cgcatcgaac caccgcctcc
     5461 tgcggtgaca ggtggaaccg attgccctcc atcagcacca ggcgcggctc gacgtcccag
     5521 taattggcga acttctccca gcagatctgg acgttcactc ccatcacgat gttgggccgg
     5581 tcagtggatt tgcctgccgc gcggcgagcg tgctgccagc gccgtttgag cgccaagccg
     5641 gccagcatgc acgcctcact ggatccggtg gtggagcagc cgatcggttc gtccacgtcc
     5701 ctggcgtgcc acagcccagc gagcatccgt acgcagcgta gctccagatc ggcggtgcgg
     5761 gggtactcgt ctttgtcaat catgttcttg tcgaaggact cggtcatcaa ggtcgtcacc
     5821 tgcggctcca tccaggtggt gacgaaggta gccaagttca gccgtgcgtt cccatcaagc
     5881 atcagctcgt catgcacgat ctggtaggcg atgtccggat cgattccagt cgccggaaac
     5941 tcgttgcgtg gaaccttcac cggttccctc gtgaacactg ggttcaccga caggtccggt
     6001 cggccttgcc tgcgcctgtt cgagggatgc gacagcggca tggaactgac agtaggtccc
     6061 ctggctgtgc cacgcccgtt cgcgagtcgc acttgttacc tgtggtcgac atgccagttc
     6121 ttgtttgacc tccgtgtgcg gggtatacaa tcgagcgtcg tctatggaga gaccgagttg
     6181 tgtgccgctg tcgggtttgt tcggtcctcg aagcgcatct gagctatatt ctggctggtg
     6241 gaggcggcgg acagtcgcgt ggagcaacgt caccgccagc cagacggaac ggggctcggc
     6301 accgcgccag tacttcacgc gcggccaacc tgccgctgtc ctctatcaac atggaactga
     6361 cgacgggcac ggataattcg ccgtgcactg caccatcgcg gtcgctcacg agcccgcaca
     6421 gcgtctcact ctcgctgatc ttgggcacgc tgcgatctcg cagttccccg acgcagcggc
     6481 gtcagtccac cagtgttgat tcggcatcag ctccggactg gcccgaactt gattgtcctg
     6541 acccgctcgg cacagggaca caaaccatga ccgaccaccc cgagaaacta cacgcagcta
     6601 gcaccagcca atagatcacc gcatgggtcc gtcgtatcgg acaggatgat cgggatgaac
     6661 aggaaaccct ttcttgtcca agccgtcttc aatctttatc ctacgctatg cactggatta
     6721 cctatttcta ttatcatgca cgttgcacgg tcggctgttt gtgggtagct atcagcacta
     6781 ggtgtcgggt gatcgaacgt gacgactttc cacagattcc gttgggtcat tcgtgaggag
     6841 gataggtgca gatcaccgga atgacaggtg cccttaccgc tgtggtggcg agcatcgcag
     6901 gcgtcctctt cgcaatcccc atagcatcag cacccctgcc cagctattag ccggtcttcc
     6961 ccagacggct cacgttatta tcgtcgtcat ggaaaaccac tcttataacg aggtaatcgg
     7021 taactcgtcg gccccgtaca tcaattcgct ggccaatggt ggtgcaaagt tcactcagtc
     7081 gttcgcggtg actcacccga gccagccaaa ctacctggca ctgttctctg gatcgaccca
     7141 gggcctcacc aacgactcct gcccgcatac ttattcca
//
LOCUS       DASVXZ010000893         3430 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_613887, whole genome shotgun sequence.
ACCESSION   DASVXZ010000893 DASVXZ010000000
VERSION     DASVXZ010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613887"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..2554
                     /locus_tag="VF788_18770"
     CDS             152..2554
                     /locus_tag="VF788_18770"
                     /inference="COORDINATES: protein motif:HMM:NF012242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8936180.1"
                     /translation="MTYSLGIDVGNTFVAAALSKTSTAAQMIALGDHAVVVPAVAYLR
                     RDGTLATGEIVGMPAGSGEDRIGRGLMSRLGDPSPVVIGGESYAVTDLLGALLGDIVD
                     RVTEAQGGSPDRIVLTRPASWGPFRCTLFEEAARQAGLVKPDMVTEPEAAAAHYATTC
                     QWNDGEAIAVYDLGASTFNATILRKQSGKVHILGEPERIEQLGGGDFDRAILSYVDNT
                     ATGALTQLDPRRPQTAVVLAGVRQACTSAKEALSTDTATTVPVLLPSKRFEVQLARPN
                     LEDMARGSITSTVEALLRTLQSAQIEPADLSAVLLVGGSSAIPLVARTVSAELGRRAV
                     VDKHPQHVVALGAATLAAQMVDRHGPVVCSVPRQRDAQLPIPAQRTPPRDTVAAELSS
                     SAVRPGARTAQPIAPVAKQPPTPPVPSIESPLPRGRHERPVDEGPASTPRARQPRVLL
                     GTGAAVALTGMIALAVFGARMGTQAEAPPGSALPPKPETTAVADVGPEVAVPGVGTTI
                     HMERSPGFVAVSPDGKHAYTADRDAQVVTVLDTAVNQVIATIPIVTGPPQFLTFAPDG
                     RRLYVTLFNDQRTIHAIDVLDTASNTVIATIPQPARPYLPAVTPDGKQLYVPNHDIGS
                     VSVIDTATNAVISQIQVAPNPHSVAFSLDGRRAYTANHESNLVSTIDTATRRVLATVP
                     VGTSPHNIAVNPRRPLAANVNYDSNSVSEIDTTTGKVVATIPVGDNPQAIAWAPDGRF
                     AYVVNQGSNSVSVIDASTGQVTTTLPTGTAPTSIAVLPNGRRAYVSNIEGGTLTVLEL
                     AG"
     gene            2673..2822
                     /locus_tag="VF788_18775"
     CDS             2673..2822
                     /locus_tag="VF788_18775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936181.1"
                     /translation="MGLIIGLLILWLVLAIVGFFIKTLLWLAIVSIIFFVATAIFGVI
                     RSRAS"
     gene            2834..>3430
                     /locus_tag="VF788_18780"
     CDS             2834..>3430
                     /locus_tag="VF788_18780"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX8936182.1"
                     /translation="MPAPAGLHRIRELSDHPGHHVLVAQPHTETEGPVAAAEAVAAQM
                     STPKHALGRPGRPINRRSPFFIGMSATAGVAVMVGVIEMIITVRDMLELIGLALFLAI
                     GLEPAVSVMARHKIPRWAAVTTALVTSLAVVVGFLAAAIPPLARQTTQFVTQAPTMLP
                     QVLHHNRALSQLNERLQLESRLHQILNGDATTLVNGLLG"
BASE COUNT          626 a         1161 c         1057 g          586 t
ORIGIN      
        1 cgccaacgcg gcaaccccgg tccgcagtca attgactaca accagttata agaattcccc
       61 gcatcacgat gttgttcagc ttttggcatg aggcagtcaa tcttccgtgt ctggtgtacg
      121 ttactttggg tttcgctttc ggggaggatt ggtgacctac agcctcggca ttgacgtcgg
      181 caacactttc gttgcggccg cgctcagcaa gacgagcacc gccgcccaaa tgatcgcatt
      241 aggtgatcat gcggtggtgg taccggccgt tgcgtacctt cggcgtgacg gcacgctagc
      301 caccggtgag attgtcggca tgcctgcggg aagcggcgag gaccgaatcg gccgtggact
      361 catgagccgc ctgggggatc cgtcgcccgt cgtcatcgga ggcgagtcct acgccgtcac
      421 cgacctgctc ggcgcgctgc tgggcgacat cgttgaccgg gtgaccgagg cccaaggcgg
      481 gtcacccgat cgcatcgtgc tgacccgtcc tgccagctgg ggcccgttcc ggtgcaccct
      541 gttcgaggag gctgcgcggc aggccgggtt ggtgaaacca gacatggtca ccgagcccga
      601 ggcggccgcg gcgcactacg ccacgacctg ccaatggaac gacggcgagg caatagccgt
      661 atacgacctg ggcgcaagca ccttcaatgc cacgatcctg cgtaaacagt ccggcaaagt
      721 gcacattctc ggtgaaccgg aacgcatcga acagcttggc ggcggcgact tcgaccgggc
      781 gatcttgtcc tacgtcgaca acaccgctac tggggcgctc acccagctgg acccacggcg
      841 cccgcagacc gccgtcgtac tcgccggcgt gcggcaggcc tgcacctcgg ccaaggaggc
      901 tctcagcaca gacaccgcga cgaccgtgcc ggtactcctg cccagtaagc gcttcgaggt
      961 ccagctggcc agaccgaatc tcgaagacat ggctcgaggt tcgatcacgt ccactgtcga
     1021 agcactatta cggactctgc aatcggctca gatcgagccg gccgacctca gcgcggtgct
     1081 gctggtaggc ggatcatcgg ccatcccgtt ggtcgcccgg accgtgtcgg ctgagctggg
     1141 acgccgcgcg gtcgtggaca agcatcctca acacgtcgtc gcgctcggcg ccgccacgct
     1201 ggccgcccag atggttgacc gtcacgggcc tgtggtgtgc agtgtcccga ggcaacggga
     1261 tgcgcagctg cccataccgg cgcaacggac ccccccacgc gataccgtgg ccgccgagct
     1321 gtccagcagc gcggtcaggc cgggcgcgag gactgctcag ccgatcgccc cggtggcgaa
     1381 gcagccaccc acgccacccg taccatcgat cgagagcccg ctgccgcggg gacgccatga
     1441 gcgaccggtt gacgaaggac ctgcatcaac cccccgcgcc cgccaaccgc gggttcttct
     1501 cggcaccggc gcggcggtgg ccctaaccgg aatgatcgcg ctggccgtat ttggtgccag
     1561 gatgggcacc caggcagagg cgccaccggg ttccgcgctc ccaccgaagc ccgaaacaac
     1621 cgcagtagcg gacgtcgggc ctgaggtggc ggtgcccggg gttggaacca ccattcatat
     1681 ggaacgcagt cctggcttcg tcgcggtgtc ccccgacggc aagcacgcgt acaccgcgga
     1741 ccgggacgct caggtcgtca ccgtgctgga caccgcggtc aaccaggtga tcgcgaccat
     1801 tccgatcgtg actggcccac cacagttcct caccttcgca ccggacggtc gcaggttgta
     1861 cgtcacgctg ttcaacgacc agcggaccat tcacgcgatc gacgtgctgg acacggcgtc
     1921 gaacacggtg atcgccacga tcccgcagcc cgcacgcccg tacctcccgg cagtcacccc
     1981 tgatgggaaa caactctatg tgcccaatca cgacattggg tccgtgtccg tgatcgacac
     2041 tgccaccaac gcggtcatct cccagatcca ggtggcaccg aatccacact cggtcgcgtt
     2101 ctctctggac ggccgccgcg cctacacggc caatcacgag tccaacctgg tttcgacgat
     2161 cgacacagcg acccgcagag tgctggcaac cgtcccggtc ggaaccagtc cacacaacat
     2221 cgcggtcaac ccgcgccgcc cgctggcggc caatgtgaac tacgactcaa attcggtctc
     2281 cgagatcgac accacgaccg ggaaggtcgt tgcgaccatc ccggtggggg acaaccctca
     2341 ggccatcgcc tgggcacctg atggacggtt cgcctacgtg gtcaaccagg gcagtaactc
     2401 tgtttcggtg atcgatgcca gcaccggtca ggtcaccacc actctgccca ccgggaccgc
     2461 gccgaccagc atcgcggtgt tgcccaacgg tcgccgagcc tatgtgagca acatcgaggg
     2521 cggcaccttg accgtcctgg agctcgccgg ctgaacttct cgacagcgct cgcggtgagc
     2581 tacaccgatc acaacgtgtg tcgaagtgat gacggtgcgt ggcaacgggc tacgctgcga
     2641 cgccgactgt cgggaagcga aagggtaccg tcatgggtct gatcatcggt ctgctcatcc
     2701 tgtggctcgt gttagccatc gttgggttct tcatcaaaac actgctgtgg ctggcgattg
     2761 tgtcgatcat attcttcgtc gccactgcga tctttggtgt gattcgcagc cgcgccagtt
     2821 gaagcacgtt gctgtgccgg cccccgccgg actgcatcgc atcagggaac tgagcgacca
     2881 ccccgggcac cacgtcttgg tcgctcaacc acacactgag accgagggac cagtggcagc
     2941 tgccgaagcg gtggctgcgc agatgagtac gccgaaacac gccctcggcc ggccgggcag
     3001 gccgatcaac cgccgatcgc cgttcttcat cggtatgagc gccaccgccg gagtcgcggt
     3061 catggtgggc gtaatcgaaa tgatcatcac agttcgggac atgctggagc tgatcgggct
     3121 ggcgctattc ctggcaatcg gtctggagcc agcggtgtcg gtgatggctc ggcacaagat
     3181 cccgcgatgg gccgcggtga ccacggcgct ggtgacgagc ctggcggtgg tggtcggttt
     3241 cctggccgcg gcgatccccc cgttagcccg gcaaaccacc cagttcgtca cccaagcccc
     3301 gaccatgttg ccccaggtgc tgcaccacaa tcgggcgtta agccagctca atgagcgtct
     3361 ccagctggaa tcacgcctgc accagatcct taacggagat gccaccacct tggtcaacgg
     3421 tttgctgggc
//
LOCUS       DASVXZ010000894         2514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_792959, whole genome shotgun sequence.
ACCESSION   DASVXZ010000894 DASVXZ010000000
VERSION     DASVXZ010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_792959"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VF788_18785"
     CDS             <1..216
                     /locus_tag="VF788_18785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936183.1"
                     /translation="SQACQLPRIVTPGTILRWHRDLVKQRWTQPRRAPQAVDPNGNQP
                     PMTPHPSDPRSPSSRFHEGINERLHRH"
     gene            577..1488
                     /locus_tag="VF788_18790"
     CDS             577..1488
                     /locus_tag="VF788_18790"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8936184.1"
                     /translation="MAGLGDVTRYAAIDEDRRLREKIVLFHRRYDGMEYSTDQVLAGG
                     GSSMLLGTFCTWLMLAGYSQVHYLPPIYYKFAYLFIQYNIEPIPVSDLHAFQSNFELQ
                     LPNRKTAFVFSDPIWYTGRKVPCGVLDTIKTWQLNTGSLVFVDGTFQYMQWDGTSAEA
                     SAQLLADQTLRLICPTKFLSLHGYRCAWLLVPKLLRDKLAELHLNLHGEASLADRLFA
                     HRACDVMFDGGNHKLLDHVQRNYQRLLKKGALNELFDVETGYFLFARPRTPHTRFLSM
                     GQDFFELSGYPDHIRINLLNNSAIDML"
     gene            1515..2261
                     /locus_tag="VF788_18795"
     CDS             1515..2261
                     /locus_tag="VF788_18795"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX8936185.1"
                     /translation="MTRSGSTPFRTVNPDTVHDAASTIKAAVLAALHHTELDLDMSVP
                     VLNSFPSVVPGTTFHNSIKMDSDPQPWRHVGGQATLRWLANRMITRSSNLATNVCLQH
                     VGLAAVAEIWRLAGATNSSTNRLIEDYAAKNIGIANVVTAADLARLFLWLGPDELDLL
                     ALNKHRVDLAAGLPLGIRIVFKNGWFPGLRHSAGIVYPDDAAPYVIAVCYTGTLATGH
                     AVDDPAAQLIARISSEIWTQRHKLGTGDRP"
BASE COUNT          510 a          798 c          683 g          523 t
ORIGIN      
        1 tcccaggcct gtcagctgcc tcggatcgtc acaccaggca cgatcttgcg gtggcaccgg
       61 gatctggtca agcaacgctg gacccagccc cgccgcgcac cgcaggccgt cgatcccaac
      121 ggcaatcagc caccaatgac accccaccca tctgacccga gaagtcccag ctcccgtttt
      181 cacgaaggca tcaacgaacg cttacaccgc cattagcgcc catcccgccg gacctcagcc
      241 ccgcgtgtcg ggccgaaaac acccttcgct gcacagtccc agcagcgccc ctggaggggg
      301 ctgagaggat gtcacaccgt tggacttgcc acagcggcag cagttctggt ggctgcgctg
      361 tccgggcact taaactcgcg gcgaagtggg gccccgaggt agcggttgta atcgtaacgg
      421 aggtgcgatg cagtcgagac gattgttctc cattatgccc ggatacgaag cgcttgatgc
      481 tgagcggcga ttgccaggag cacgcccgtt tatttccgac tatcacggtg gcatccgttc
      541 gtcgaagact atcttggcaa cttggcgtct tgccctttgg ctggcttagg agatgtcacg
      601 cggtacgcgg caattgacga ggaccggcgg ctgcgggaga agatcgtgct cttccaccgg
      661 cggtacgacg gtatggagta ttcgacggac caggttcttg ctggtggcgg ttcgagcatg
      721 ctgctcggaa cgttttgcac ctggttgatg ctcgccggat attcccaggt gcactatcta
      781 ccgccgatct attataagtt cgcttacctg ttcatacagt acaacattga gccgataccg
      841 gttagcgacc tgcatgcttt ccagtcgaat tttgagctac agttgccaaa ccgcaaaaca
      901 gcatttgtat tcagcgaccc tatctggtat acggggcgca aggtgccatg tggggtactc
      961 gatactatta agacgtggca gctcaacacc ggctcactgg tattcgtcga cggcaccttc
     1021 caatacatgc aatgggatgg aacgtccgcc gaagcctcgg cgcagctcct tgcggatcag
     1081 acacttcgct tgatctgccc caccaagttc ctctccctac acggctatcg gtgcgcctgg
     1141 ctgcttgtcc cgaagcttct ccgggacaag ctggccgagc tgcacctcaa cctgcacggc
     1201 gaagcctcgc tggcggatcg acttttcgcc caccgagcct gcgatgtcat gttcgatggc
     1261 ggcaaccaca aactgctgga ccacgtccaa cgcaactatc aaagactact gaaaaaaggt
     1321 gctctcaacg agctctttga tgtcgagacc ggctacttcc tgttcgcccg gccaaggaca
     1381 ccacacacgc gctttctcag tatgggacaa gacttcttcg agctcagcgg ctaccctgac
     1441 catatccgca tcaacctgct taacaactcc gcgatcgaca tgctctaacc gaggcctttg
     1501 tgctatctat atacgtgacc cgatcaggtt cgacgccgtt tcgcacggtg aaccccgata
     1561 ctgtccacga cgcggccagc acgataaaag cagcggtcct cgctgcgttg caccacaccg
     1621 aactcgatct agacatgtcg gtccccgtgc tcaactcatt cccctctgtc gtaccgggaa
     1681 ccacgtttca caactccatt aaaatggatt ctgatcccca accgtggcgc cacgtgggtg
     1741 gtcaggcaac cctgcgctgg ctggccaaca ggatgatcac ccggtcatca aacttggcca
     1801 ccaacgtctg ccttcaacat gtcggactag ccgctgtggc cgaaatctgg cgattggcgg
     1861 gtgctacgaa cagctcgact aatcgcctta tcgaggacta tgccgccaag aacatcggga
     1921 tcgccaacgt ggtcaccgcc gccgacctgg cacggctttt cctgtggcta ggtccagacg
     1981 aactggacct gctcgcactc aacaagcacc gagtcgatct cgccgcgggt ctgcccctcg
     2041 gtatccggat cgtcttcaaa aacggctggt ttccggggct acgccatagc gctggaatcg
     2101 tctatcccga cgatgccgcg ccctatgtca ttgcagtctg ctataccggc acgctcgcca
     2161 ccgggcatgc cgtggacgat cccgccgcac agctgatcgc tcgaatctcc tcagaaatct
     2221 ggacgcaacg gcacaagttg ggtaccggcg accgccctta atatggccgg gtacgaatcc
     2281 cagattcacc gctgaaactg gtgacaccac cgtcttaaaa cctgtgggtc agcggggtca
     2341 tttgcgcttc cgtcctgact tcggccaaat tagtgcgcac ctgcggtcag atgatctgag
     2401 cgagggcatc gcgtagctct gcggggatcg ggtcggcggc ggtgagcaac tggtttccgg
     2461 cgcggatctg gacggtccgg tagcgccgcg cggtctggac gaacttcttg atgg
//
LOCUS       DASVXZ010000895        12193 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1493843, whole genome shotgun sequence.
ACCESSION   DASVXZ010000895 DASVXZ010000000
VERSION     DASVXZ010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12193
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1493843"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3622
                     /gene="gltB"
                     /locus_tag="VF788_18800"
     CDS             <1..3622
                     /gene="gltB"
                     /locus_tag="VF788_18800"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019806991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEX8936186.1"
                     /translation="MMIPEAWENHQEMDPARRAFYEFHSTLMEPWDGPALIAFTDGTV
                     IGAVLDRNGLRPARYWVTEDGLVVLASEVGVLDIDPTTVVRKGRLEPGRMFLADTAAG
                     RIVGDDEVKGRLAAEHPYADWVAEGLTWLEDLPEREREVFTHASLVRRQQSLGYTQEE
                     LAVLLTPMALTGAEPIGSMGNDTPLAPFSQQSRPLFDYFTQLFAQVTNPPLDAIREEL
                     VTSLQAQLGAQPNLLVSDGDSCRRIVLPFPVLDNDELAKIVHVNDDGEWPEYQSHTIK
                     GLYNVHGGGGALVLRINEICVEVSAAVRAGARLIVLSGRGVDADQASIPSLLLTGAVH
                     HHLVREKTRTQVGLIVETADAREVHHVALLIGYGAAAVNPYLAMATVEDLAERGLLRG
                     IDGKTATRNLIKALGKGVRKTMSKMGVSTVASYTGAQIFEAIGLGPEVIDSCFTGTTS
                     RLGGVGFDTLAEEVARWHGRTFPADGVRAPHRELAIGGDYQWRREGEPHVFNPQTVFK
                     LQHSTRAGRYEIFKEYTRLVDDQSQRLMTLRGLFTFREGLRTPVPLDEVESVASIVKR
                     FATGAISYGSISKEMHEVLAIAMNRLGGKSNTGEGGEDADRYTRDPNGDLRRSAIKQV
                     ASGRFGVTSEYLVNADDLQIKISQGAKPGEGGQLPGTKVYPWIAKTRYSTPGVGLISP
                     PPHHDIYSIEDIKQLIHDLKNANPWARVHVKLVSEVGVGTVAAGVAKAYSDVVLISGH
                     DGGTGASPLSSIKHAGTPWELGLAETQQTLIANKLRDRIVVQTDGQLKTGRDVMVAAL
                     LGAEEYGFATAPLVVSGCIMMRVCHLDTCPVGVATQNPVLRAKFTGKAEYVVNFFQFI
                     AQEVREYLAALGFRSLEEAIGRTEVLDTRPAIEHWKAAGLDLSPILHLPSDLDHDAPR
                     HRTREQDHGLDKALDNTLIALAEGALDGGDPVRLDLPVRNVNRTVGTMLGHHLTRRWG
                     GEGLPEGTIDITLTGSAGQSFGAFLPRGITLRLVGDANDYVGKGLSGGRITVRPHPDA
                     QFTAEHNIIAGNVILYGATSGELFLRGIVGERFCVRNSGALAVVEGVGDHGCEYMTGG
                     QVVVLGTIGRNFAAGMSGGVAYVLDLGEPVMGARVNREMVDLDPMTDEDRTFLADAVG
                     RHHAETGSAVAHALLADWDTAVDRFGKVMPKDFKRVLAAQAAAQRDGRDVDEAIMEAA
                     HG"
     gene            3615..5066
                     /locus_tag="VF788_18805"
     CDS             3615..5066
                     /locus_tag="VF788_18805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEX8936187.1"
                     /translation="MADPKGFLTTGRRNPPRRPVELRLRDWREVYEDFGREALEAQAG
                     RCMNCGIPFCHLGCPLGNLIPEWNDLVWRQDWADAAERLHATNNFPEFTGTLCPAPCE
                     AACVLAINDDAVTIKQVEIEIIDRAWDEGWVRPARAEARTGKKVAVVGSGPAGLAAAQ
                     QLTRVGHDVVVYERADRIGGLLRYGIPEFKMTKYRLDRRLDQMRAEGTEFLAGVDVGV
                     DLDVDELKAGFDAVVLAGGATAWRDLSVPGRELTGIYQAMEYLPPSNRVQEGDLAQSP
                     IDAAGQHVVIIGGGDTGADCLGTAHRQGAASVVQLEIMPIPPEHRPEHQPWPSYPMVY
                     RVSSAHEEGGKRLFSVSTQQFLGDADGRLRALRLVDVVFEDGKFVPVPGTEQDLSCDL
                     VLLAMGFVGPEKSKLLEGLGVEYDPRGNVARDSDFMTNVPGVFVAGDMGRGQSLIVWA
                     IAEGRSAAAGADRYLTGRDILPVPVAPTDRPMA"
     gene            5183..6202
                     /locus_tag="VF788_18810"
     CDS             5183..6202
                     /locus_tag="VF788_18810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016330992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936188.1"
                     /translation="MTVWAVIEDFSPHPPRALEPSGVAVWQQLIRDQHGLLDTDQLRL
                     LDIGPGVVTANLEAQRWRRVLPRVYATFTGPLNREARITGALLYGGAQALLSHTTAAE
                     EWRMLAPDSLAPVHITVPYGCSAVSQHPHVVVHRSRTFPHLKVATDPARTSKADTVLD
                     LATSEPDARAGMRRFVALATRGRVPVRELQRRLEERRPRRYGAALADALRLLADGVQS
                     ALEQRYACDVEMAHALPIAKRQQPIVVDGRTLWEDVSYDVIGIPLTVRLDGRAFHDAP
                     EVAFRDRRRDNAAELAARHRLVYGWDEVTRDPCGVAAEVAAILHRGDWHGPLRRCGVG
                     CANPP"
     gene            complement(6254..6991)
                     /locus_tag="VF788_18815"
     CDS             complement(6254..6991)
                     /locus_tag="VF788_18815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936189.1"
                     /translation="MAVRIRVVSWNVDSRPTGLLDAKVELLRQLQPDLALLQEIGRPV
                     YRALMPHPSAHERMHRKTRQFAWGALSTDLCNPRASEFRLGCAILGAPTTALLDSRVL
                     DAAPFDVREPVLPGFLWRTVTAQVALSTGDMLTACSFHGRQPSGQPAASLQRAFHVGI
                     AKWLAGVSGPVVFGIDAGPSLPEGADPLLGPGPVHHLNQVLSVDNDHLWGTRELEVLD
                     VQRLPVESAAAGSDHALLLADLALRDS"
     gene            complement(6991..8061)
                     /locus_tag="VF788_18820"
     CDS             complement(6991..8061)
                     /locus_tag="VF788_18820"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEX8936190.1"
                     /translation="MSVNYVTRPWESGLFRRCRRAWNFGARERQNYEPIAPSQVFDFS
                     EAIHDALDVYYFPGMWDWNRAIVCPLAVAGLEKSMRRQRDAYARSRELSAEQVQDWEQ
                     HLELGTDLLRRYFEWAREVDRFTPIGVASQFDVNLPDPADADRGLISPEGRPLQCRVR
                     IDLSVIDDHELYWLVEHRIVTGSQWPDLDELRLDEQALTRSWAWQLGFLAKLEGTIYN
                     EMRMATPSESKPEVKVRAIPGAGGITTQRSTESFRRTHIPRTEREIDRRGAAVALEMQ
                     DMTDPSVRIYPNPSRENCSGCAYRPPCLAMTQGTDEKPILDTAYRKRVSEDFEPGRLG
                     SVWGFVPEIYRVSEHRARNAER"
     gene            complement(8131..9270)
                     /locus_tag="VF788_18825"
     CDS             complement(8131..9270)
                     /locus_tag="VF788_18825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX8936191.1"
                     /translation="MLSEEHSALRATVEEFARKEVAPVIGELYAQAAFPYALVAKMGE
                     MGLFGLPFPEEYGGMGGDYFALCLALEELARVDSSVAITLEDSVSLGTMPIFRFGTEE
                     QKQCWLPELCSGQRLGAFGLTEPGGGSDAGATRTTARCESDDWVINGSKAFITNSGTD
                     ITSVVTVTAITGVSGGRKEISTIMVPARHPGFTISVNYSKVGWKCSDTRALFFDDCRV
                     PVANLLGERGRGYAQFLSILDEGRIAIAAVGVGLAQGCIDECVSYARQRHAFGHAIGS
                     YQAIQFKIADMEARTHTARLAYYHAAARMLRGESFKKEAAIAKLVSSNAAMDNARDAT
                     QIFGGYGFMNEYPVARFYRDAKVLEIGEGTSEIQRLLIARHLGLT"
     gene            complement(9326..11311)
                     /locus_tag="VF788_18830"
     CDS             complement(9326..11311)
                     /locus_tag="VF788_18830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX8936192.1"
                     /translation="MFHTVLVANRGEIAVRVIRTLRAMGVRSVAVYSDADAGARHVRD
                     ADIAVRLGPAPPAQSYLSIERILDTAAGTGAQAVHPGYGFLSENAVFARACAGADLVF
                     VGPPAASIEAMGDKLRAKATVAAAGVPVLPGSHGAGCDDDSLAAAAATVGYPVLLKPS
                     AGGGGKGMRVVRRAQDLPEAIAGARREAQGAFGDGTLLVEWLVPTPRHIEIQVLADAH
                     GNAVHLGERECSLQRRHQKIVEESPSTWLDPATRARMGECAVTVARAVGYTGVGTVEF
                     LVPADAPDQFFFMEMNTRLQVEHPVTELVTGLDLVEWQLRVAAGEQLAFTQDDVRIDG
                     HAAEARIYAEDPVGGYLPTGGRVLLLREPPGVRVDSGLVAGEFVGSDYDPLLAKVIAH
                     GPDRDTALRRLDSALAGTSILGLGTNLAFLRTLLADPDVQAGKLDTGLVERLVTAPEE
                     LPDDVLAAAGLRALLALEPGTGVVDPFTLPGGWRLGEPAWTRWTVQAGGYDAVAVATR
                     GRAVDAELIIGKGVPTRASAWWDGGDLVVTFNRVTRRYTCAVDGAVVWLGRDGHSWEL
                     SGQPVVGAARPTEPGTGGSVRAPMPGTVTVVEVVEGQQVSVGTRLLVLEAMKMEHVLT
                     APIDGVVRELTVSPGRTVERGAVVAVVGPACAESRDP"
     gene            complement(11342..>12193)
                     /locus_tag="VF788_18835"
     CDS             complement(11342..>12193)
                     /locus_tag="VF788_18835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016337024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX8936193.1"
                     /translation="GVTDHLADDDAHALRIVRSIVGTLGPRAPQPWEVIPTEEPSLEG
                     IYGVVPVDSRTPYDVHEVVDRIVDGSCLAEFKAEYGMTLVTGFARLHGHPVGIVANNG
                     ILFSESALKGAHFIELCDQRGIPLVFLQNISGFMVGREYEAGGIAKHGAKMVTAVATT
                     RVPKLTVIIGGSFGAGNYSMCGRAYSPRFLFMWPNARISVMGGEQAATVLAAVRGAGA
                     PESDVSVTEGIRAQYEHQGNPYYSTARLWDDGVIDPADTRMVLGLALSACANAPLEPS
                     RLGLFRM"
BASE COUNT         2028 a         4198 c         4065 g         1902 t
ORIGIN      
        1 gatgatgatc ccggaggcgt gggagaacca ccaggagatg gacccggcgc ggcgcgcgtt
       61 ctacgagttc cactccaccc tcatggagcc ctgggacggc ccggcgctga tcgccttcac
      121 cgacggcacc gtgatcggcg cggtgctgga ccgcaacggc ctgcgaccgg cccggtactg
      181 ggtcaccgag gacggcctgg tggtgctggc cagcgaggtc ggggtgctcg acatcgaccc
      241 caccacagtg gtgcgcaagg gtcgactgga gcctggccgg atgttcctcg ccgacaccgc
      301 ggcaggacgc atcgtcggcg acgacgaggt caagggcagg ttggccgccg agcatcccta
      361 cgccgactgg gtcgcggagg gtctgacctg gctggaggac ctgcccgagc gcgaacgcga
      421 ggtgttcacg catgcctcgc tggtgcgccg ccagcagagt ttgggataca cccaggagga
      481 gttggcggtg ctgctgacgc cgatggcgct caccggcgct gagccgatcg gctccatggg
      541 caacgacacg ccgctggcgc ccttctcgca gcaatcccgg ccattgttcg actacttcac
      601 ccagctgttc gcccaggtca ccaacccgcc gctggacgcc atccgggagg agttggtgac
      661 ctcgctgcag gcgcagctgg gagcccagcc caacctgctg gtgtccgacg gcgactcctg
      721 ccggcggatc gtgttgccgt tcccggtgct ggacaatgac gagctcgcca agatcgtcca
      781 tgtcaacgat gacggcgagt ggccggagta ccagtcccac accatcaaag gcctttataa
      841 cgtgcacggt ggcggcggag cgctggtgct ccggatcaac gagatatgcg tcgaggtctc
      901 tgccgcggtg cgggccggtg cccggctgat cgtgctctcc ggccggggcg tcgacgctga
      961 ccaggcgtcg atcccgtcgc tgctgctcac cggcgcggtg caccaccatc tggtgcgaga
     1021 gaagacgcgc acccaggtcg gcctgatcgt cgagacggcc gatgcccgcg aggtgcacca
     1081 cgtcgcgctg ctgatcggct acggcgccgc agccgtcaac ccctacctgg cgatggccac
     1141 ggtggaggac cttgccgagc ggggcctgct gcgcggcatc gacggcaaga ccgccacccg
     1201 caacctgatc aaagctctgg gtaagggcgt gcgcaagacg atgtccaaga tgggggtctc
     1261 cacggtggcc tcctataccg gcgcgcagat cttcgaggcg atcgggctcg ggccggaggt
     1321 catcgattcc tgcttcaccg gtaccacctc ccggctcggc ggggtcgggt tcgacacgct
     1381 ggccgaggag gtcgcgaggt ggcacgggcg gaccttcccg gctgatggag tgcgcgcgcc
     1441 gcaccgggag ctcgcgatcg gcggcgatta ccagtggcgc agggaaggtg agccacacgt
     1501 cttcaacccc cagacggtgt tcaagctgca gcactccacc agggcgggcc gctacgagat
     1561 cttcaaggag tacacccggc tggtcgacga ccagtcgcag cggctgatga ccctgcgcgg
     1621 gctgttcacc ttccgcgaag gcctccgcac acccgttccc cttgacgaag tggagtcggt
     1681 agcgtccatc gtcaagcggt tcgccacggg cgccatctcc tacggatcca tctccaagga
     1741 gatgcacgag gtgctggcca tcgcgatgaa ccgcctgggc ggcaagtcca acaccgggga
     1801 gggcggagag gacgccgacc gctacacccg cgatcccaac ggggacctgc gccgctcggc
     1861 gatcaagcag gtggcctccg gccggttcgg ggtgaccagc gaatacctcg tcaacgccga
     1921 cgacctgcag atcaagatct cgcagggcgc caagcctggc gaaggtggtc agctgcccgg
     1981 aaccaaggtg tacccgtgga tcgcgaagac ccggtactcc acgcccgggg ttgggctgat
     2041 ctcaccgccc ccgcaccacg acatctactc gatcgaggac atcaagcagc tgatccacga
     2101 cctcaagaac gccaacccgt gggcccgcgt gcacgtcaag ttggtcagtg aagtcggagt
     2161 cggcaccgtg gccgcggggg tggccaaggc gtactcggac gtggtgctca tctccggtca
     2221 tgacggcggc accggggcct ccccgctgtc gtcgatcaag catgccggca cgccttggga
     2281 gctgggcctg gccgagaccc agcagacctt gatcgccaac aagctgcggg accgcatcgt
     2341 cgtgcagacc gacggccagc tcaagaccgg ccgcgacgtc atggtcgccg cgctgctggg
     2401 cgccgaggag tacggcttcg ccaccgcccc gctggtggtc tcgggatgca tcatgatgcg
     2461 ggtctgccat ctggacacct gcccggtcgg ggtggccacc cagaacccgg tgctgcgcgc
     2521 gaagttcacc ggcaaggccg agtacgtggt caacttcttc caattcatcg cccaggaggt
     2581 acgcgaatac cttgcggcac tcgggttccg cagcctggaa gaggccatcg gccgcaccga
     2641 ggtgctggat acccgcccgg caatcgagca ctggaaggct gccgggctgg atctctcgcc
     2701 catcctgcat ctcccctccg acctcgacca cgatgcccct cggcaccgga cccgggaaca
     2761 ggaccacggg ctagataagg cgctggacaa caccctcatc gccctggccg agggggcgct
     2821 ggacggcggt gacccggtgc ggctggacct gccggtacgc aacgtcaacc ggaccgtcgg
     2881 caccatgctg ggccaccatc tcacccgccg ctggggtggg gaggggctgc ccgagggcac
     2941 catcgacatc accctgacgg gctcagccgg ccagtccttc ggggccttcc tgccccgcgg
     3001 gatcaccctg cggctggtag gcgatgccaa cgactacgtc ggcaagggcc tgtccggcgg
     3061 gcggatcacc gtccgcccac atcccgatgc gcagttcaca gcggagcaca acatcatcgc
     3121 cggcaacgtg atcctttacg gcgccacgtc tggggagctg ttcctgcgcg ggattgtcgg
     3181 ggaacgcttc tgcgtgcgca attcgggggc gctggccgtc gtcgagggcg tcggtgatca
     3241 cggctgcgag tacatgaccg gcggtcaggt ggtggtgctc ggcacgatcg gtcgtaattt
     3301 cgcggccggc atgtccggcg gggtcgctta cgtgctggac ctcggcgagc ctgttatggg
     3361 agccagggtc aatcgagaga tggttgacct ggacccgatg accgacgagg accgcacctt
     3421 cttggctgat gcggtagggc gccaccacgc cgagaccggc tccgccgtgg cccacgcgct
     3481 actggccgac tgggacaccg cggtagaccg tttcggcaag gtcatgccca aggacttcaa
     3541 gcgcgtcctg gccgcccagg ccgcggccca acgcgacggc cgcgatgtcg acgaggccat
     3601 catggaggcc gcccatggct gatcccaagg gcttcctcac gacagggcgg cggaacccgc
     3661 cgcggcgtcc agtggagctg cggttgcgtg actggcggga ggtctatgaa gacttcggcc
     3721 gcgaggcgct ggaggcccag gccggccggt gcatgaactg cggaatcccg ttctgccatc
     3781 tgggttgccc gctgggcaac ctcatcccgg agtggaacga cctggtgtgg cggcaggact
     3841 gggccgacgc tgctgagcgg ctgcatgcca ccaacaactt ccccgagttc accgggacgt
     3901 tgtgcccggc gccgtgcgag gccgcttgcg tgctggccat caacgacgac gcggtgacca
     3961 tcaaacaggt cgagatcgag atcattgacc gggcctggga tgagggctgg gtgcgtccgg
     4021 ctcgggccga ggcgcgcacc ggtaagaagg tggctgtggt cggatccggc ccggcggggc
     4081 tggccgcggc acagcagttg acccgggtgg ggcacgacgt ggtggtctac gagcgcgcgg
     4141 accgcatcgg cgggctgctg cgctacggca tccccgagtt caagatgacc aaataccggc
     4201 tggaccggcg cctggaccaa atgcgcgcgg agggcaccga attcctggcc ggcgtcgacg
     4261 tcggggtgga tcttgatgtc gacgagctaa aagccggttt cgacgcggtg gtgctcgccg
     4321 gtggggccac cgcgtggcgg gacctgtcgg tacctggccg cgagctgacc ggcatctacc
     4381 aggcgatgga gtacctgccg ccgtcgaacc gggtacagga aggtgatctg gcacagtcgc
     4441 cgatcgacgc tgcaggccaa catgtggtga tcatcggagg cggcgacacc ggagccgact
     4501 gcctgggcac cgcgcatcgc cagggcgccg cctcggtcgt ccagctggag atcatgccca
     4561 ttccaccgga gcaccgtccc gaacaccagc cttggcccag ctacccgatg gtctaccggg
     4621 tgtcctcagc ccacgaagaa ggcggaaagc ggctgttctc ggtgagcacc caacaattcc
     4681 tcggtgacgc cgacggtcgg ttgcgtgcgc tccggctggt cgacgtggtc ttcgaggatg
     4741 gcaagttcgt cccggtgccc ggcaccgagc aggacctgtc ctgcgatctg gtcctgctgg
     4801 cgatgggttt cgtcggcccg gagaaaagca agctcctgga gggtctcggc gtcgagtatg
     4861 acccgcgcgg caatgtcgcc cgcgacagtg acttcatgac caacgtgccg ggagtcttcg
     4921 tcgccggcga catgggccgt ggtcagtccc tgatcgtctg ggccatcgcc gaaggccgct
     4981 ccgccgccgc cggcgcggac cgctacctca ccggccgaga catcctcccc gtcccggtcg
     5041 cccctaccga ccggcccatg gcctaacggc cccgtgagtg gcgatgcggg ctatagcctg
     5101 catcgccact cacgggttat ccacaagcgc gggggtatcc acaagttcgg ttatgagtcg
     5161 gtgctgcgcg agagccgggc gtgtgaccgt ctgggccgtg atcgaggatt tctctccgca
     5221 cccgcctagg gcactagagc catccggggt agccgtctgg caacaactga tccgcgacca
     5281 acacgggcta ctcgataccg atcagttgcg gctgcttgat atcgggcctg gcgtggttac
     5341 cgccaacctc gaagcccagc gctggcggcg tgtgctgccg cgggtctatg ccaccttcac
     5401 cggcccgttg aacagagaag cgaggatcac cggggcgctg ctctacggcg gcgctcaggc
     5461 cctgctcagc cacaccaccg cggccgaaga atggcgcatg ctcgctcccg attcgctcgc
     5521 gccggtgcat atcaccgtgc cctatggctg ctctgcggta tcccagcacc cgcatgtcgt
     5581 ggtgcaccgg tcccgcacct tcccgcacct caaagtagct acggatccag cccgcaccag
     5641 caaagcggac accgtgctgg accttgcgac gagcgagccg gacgcgcgag cggggatgcg
     5701 gcggttcgtg gcgctcgcta cccgaggccg ggtacccgtg cgggagctgc aaaggcggct
     5761 ggaggaacga cgaccacgca ggtacggtgc cgcgctcgct gatgcactgc gcttactggc
     5821 tgatggggtg cagtcggccc tggaacagcg ttacgcctgc gacgtcgaaa tggcccacgc
     5881 gctccccatc gcgaagcgtc agcaacccat cgtcgtggat ggacggaccc tctgggaaga
     5941 cgtcagctat gacgtgatcg gtatcccact caccgtccgg ctcgacggcc gggcctttca
     6001 cgacgcaccc gaggtggcct tccgggaccg gaggcgggac aacgcggccg aactcgccgc
     6061 ccgtcaccgc ctggtctacg gctgggacga ggtcacccgg gatccctgcg gcgtcgcggc
     6121 cgaggtggcc gcgatcctcc accgcgggga ctggcacgga ccgctccgac ggtgtggggt
     6181 tggctgcgcc aaccccccgt gagtggcgat acgggccaga gctcgtatcg ccactcacgg
     6241 ggcctcggcc acgtcacgag tcgcgcaggg ccaggtccgc gagcaacagg gcgtggtcgc
     6301 tgccggcggc tgcggactca acaggcaggc gctgcacgtc aaggacctct agttcccggg
     6361 ttccccacaa gtgatcgttg tccacgctca gcacttggtt gaggtggtgc accggtcctg
     6421 ggcccagcag cggatccgcg ccttcgggca acgagggacc ggcgtcgatg ccgaacacga
     6481 ccggaccgga cacgccagcg agccacttgg cgatcccaac gtgaaatgcc cgctgcagcg
     6541 acgcggcggg ctgaccggag ggctgccggc catggaagct gcacgcagtc aacatgtcgc
     6601 cagtggacag cgcgacctgg gccgtcaccg tccgccagag gaacccgggc agcaccggtt
     6661 cgcgaacatc gaacggggcg gcgtccagga cacgggagtc cagcagcgcg gtggtcgggg
     6721 caccgaggat ggcgcaaccc aaccggaact cgctggcacg cgggttgcac agatcggtgg
     6781 acagtgcacc ccaggcgaac tgcctggtct tgcggtgcat ccgctcatgc gcagacgggt
     6841 gcggcatcag cgcgcggtag accgggcgac caatctcctg aagcagcgca agatcaggct
     6901 gcagctggcg gagtagctca accttggcgt ccagcagccc agtcgggcgg gaatcgacgt
     6961 tccagctcac cacccggatg cgcaccgcca ttaccgctcg gcattccgag cgcggtgctc
     7021 gctaacccgg tagatctcgg gaacgaatcc ccacaccgac cccagccgac ccggctcgaa
     7081 gtcctcgctg acccgcttgc ggtaggccgt gtcgagaatt ggcttttcgt cggtcccctg
     7141 ggtcatcgcc aggcatggcg gccggtaggc gcatcccgag cagttctccc gggacggatt
     7201 cgggtagatc cgcaccgacg gatcggtcat gtcctgcatt tccagcgcca cagcggcacc
     7261 ccgccggtcg atttcgcgct cggttctggg gatgtgggtg cggcggaacg attcggtgct
     7321 gcgctgcgtg gtgatcccac cagccccggg tatcgcccgg acctttacct caggcttgct
     7381 ttcgctgggc gtagccattc gcatctcgtt gtagatcgtg ccttcgagct tggcgaggaa
     7441 gccgagctgc catgcccagc tccgggtcag tgcctgctcg tcgagccgca actcgtcgag
     7501 gtccggccac tgcgaaccgg tgacgatccg gtgctcgacc agccagtaca actcgtggtc
     7561 atcgatgacc gacaagtcga tccgcacgcg gcactgcagc ggccgaccct ccgggctgat
     7621 gagcccccga tcggcgtcgg cggggtcggg caggttgacg tcgaattgcg aggcgacccc
     7681 gatcggggtg aagcggtcga cctcgcgcgc ccattcgaag tagcgccgga gcaggtcggt
     7741 gcccagctcc aagtgctgct cccagtcctg gacctgctcg gcggacagtt cccgggagcg
     7801 cgcgtacgcg tcgcgctgcc tgcgcatcga tttctccagg ccagccacgg ccagcgggca
     7861 cacgatcgcc cggttccagt cccacatacc ggggaagtag tagacgtcca gcgcgtcgtg
     7921 gatcgcctcg ctgaagtcga agacctgtga cggcgcgatc ggctcgtagt tttgccgctc
     7981 ccgcgcaccg aaattccagg cccgccggca ccgccggaac aacccgctct cccacggcct
     8041 ggttacataa ttcacgctca cggccacctc ctgccgcccc gactgcgatc ccgagcgtac
     8101 cgtcccaaac cgctgaatgc gggacggagc tcaggtgagg ccgaggtggc gggcgatgag
     8161 gaggcgttgg atctcgctgg tgccttcacc gatctccagg accttggcgt cccggtagaa
     8221 ccgggctacc gggtactcgt tcatgaagcc gtaaccaccg aagatctggg tggcatcccg
     8281 agcgttgtcc atcgccgcat tcgaggacac cagcttcgcg atggccgcct ctttcttgaa
     8341 cgactcgccg cgcagcatcc tcgccgctgc gtggtagtag gccagcctgg cggtgtgcgt
     8401 tcgagcctcc atatcagcga ttttgaactg gatcgcctgg tagctgccga tggcgtgacc
     8461 gaatgcgtgc cgctggcggg cataggacac gcactcgtcg atacaaccct gagcaagccc
     8521 gacgcccacc gcggcgatcg cgatgcggcc ctcgtcgagg atggacagga actgtgcata
     8581 accccggccg cgctcaccca gcaggttagc caccggcacc cgacagtcgt cgaagaacaa
     8641 cgcccgagtg tccgagcatt tccagccgac tttggagtag ttcaccgaga tcgtgaagcc
     8701 cgggtggcgg gcgggcacca taatggtgga gatttccttg cggcccccgc tgacgccggt
     8761 gatcgcggtg acggtgacca ccgaggtgat gtcggtgcct gaattggtga tgaaggcctt
     8821 ggacccgttg atcacccagt cgtcgctctc gcagcgcgca gtagtccgag tggcgcccgc
     8881 gtctgaaccg ccaccaggtt ccgtcagccc gaacgcgccg agccgctgac cgctgcacag
     8941 ctccgggagc cagcactgct tctgctcctc ggtgccgaac cggaagatcg gcatcgtgcc
     9001 cagcgacacg ctgtcctcca gcgtgatggc aaccgacgag tccacccgcg ccagttcctc
     9061 cagggccagg cacagcgcga agtagtctcc ccccatcccg ccgtactctt cggggaaggg
     9121 cagcccgaac agtcccatct ctcccatctt cgccaccagc gcgtacggga acgctgcctg
     9181 cgcgtacaac tcgccgatca ccggcgcgac ttctttacgg gcaaactcct caacggtcgc
     9241 gcgcagcgcc gagtgttctt cgctcaacat ggcgtgtcgc cctctcctac cccgcgtgtc
     9301 gcgtccgcgt gcgcggtgtg tcgtgtcatg ggtctcgtga ctcagcgcac gcggggccga
     9361 ccacagcgac cacagcgccg cgctcgacgg tccgcccagg gctgacggtc agctcgcgca
     9421 ccaccccatc gatgggagcg gtgagcacat gctccatctt catcgcctcc agcacgagca
     9481 accgggtgcc cacgctgacc tgctgacctt cgaccacctc gacgacggtg acggtgccgg
     9541 gcatcggagc gcgcaccgac ccaccggtgc ccggctcggt gggtcgcgcg gcgccgacga
     9601 ccggctgccc gcttagttcc cagctgtgcc cgtcgcggcc cagccacacc acggcgccgt
     9661 cgaccgcgca ggtatagcgg cgggtgaccc ggttgaaggt gacgacgagg tccccgccgt
     9721 cccaccatgc tgacgcgcga gtcgggacgc ctttgccgat aatgagctcg gcgtcgacgg
     9781 cgcggccacg agtcgcgacc gcgaccgcgt cgtaaccgcc ggcctgcacc gtccagcggg
     9841 tccaggccgg ctcgccgagc cgccacccgc cgggcagcgt gaatggatcg accactcctg
     9901 tgccgggttc cagtgccagc agcgcccgca accccgccgc ggcgagcacg tcgtcaggca
     9961 gctcttccgg ggccgtgacg aggcgctcca ccagcccggt gtccagcttt ccggcctgca
    10021 catcgggatc ggcgagcagg gtgcgcaaga acgccaggtt ggtgcccaga ccgaggatgc
    10081 tggtccccgc caatgccgag tccagccggc gcagggcggt atcccgatcc gggccgtgcg
    10141 cgatgacctt ggccagcaag gggtcgtagt cgctacccac gaactcgccc gccaccaacc
    10201 cggagtccac ccgaacgccg ggcggctcgc gcaacaagag cacccgccct ccggtaggca
    10261 ggtaaccacc caccgggtcc tcggcgtaga tccgcgcctc ggcagcatgt ccgtcaatcc
    10321 ggacgtcgtc ctgggtgaaa gccagctgct ccccagcggc tacccgcaac tgccattcga
    10381 ccaggtccaa cccggtgacc agctcggtga ccgggtgctc gacctggagc cgggtgttca
    10441 tctccatgaa gaagaattga tcgggcgcat cggccggcac caggaactcc accgttccga
    10501 cgccggtgta tcccacggcg cgcgcgacgg tgaccgcgca ctcgcccatc cgggccctgg
    10561 tcgccggatc gagccacgtc gagggcgact cctcgacgat cttctggtgc cggcgctgca
    10621 ggctgcactc gcgctcgccg aggtgcaccg cgttgccgtg cgcgtcggcc agcacctgga
    10681 tctcgatatg ccgcggggtg ggaacgagcc attcgacgag cagggtgccg tcgccgaagg
    10741 caccctgggc ttctcggcgg gcaccggcga tggcctcggg caggtcctgc gcgcgtcgca
    10801 ccacccgcat gcccttgcct ccaccgccgg cggagggctt gagtagcacc gggtagccga
    10861 cggtagcggc cgcggcggcc agtgaatcat cgtcacaacc ggcaccgtgg ctgcctggca
    10921 gcacggggac gcccgccgcc gccacggtcg ccttcgccct gagcttgtcg cccattgcct
    10981 cgatggaggc ggcaggtggc ccgacgaata ccagatcggc gccagcacac gcccgggcga
    11041 agacggcgtt ctcggagagg aacccgtagc cagggtgcac tgcctgcgcg ccggtgcccg
    11101 cggccgtgtc caggatccgc tcgatcgaca ggtaactctg cgctggcggc gcgggtccga
    11161 gccggacggc gatgtcagcg tcacgaacgt gccgggcgcc ggcgtctgcg tcgctgtaca
    11221 ccgccacgga ccggacgccc atggcgcgca acgtgcggat cacccggacg gcgatctcac
    11281 ctcgattggc caccagcacg gtgtggaaca tccgcgaagc ctgcttagcc cccatcaccg
    11341 atcacatccg gaaaaggccg agccggctgg gttccaacgg cgcgttggca caggcggaca
    11401 gcgccagacc gagcaccatc cgggtgtccg cagggtcgat cacgccgtcg tcccataacc
    11461 gggccgtcga gtagtagggg ttgccctggt gttcgtattg ggcgcggatg ccctcagtga
    11521 cggacacatc ggattctggg gcgccggcgc cccggacagc ggcgagaacc gtggcggcct
    11581 gctcgccgcc catgaccgag atccgggcat tgggccacat gaacaagaac cgcggcgaat
    11641 acgcacgccc gcacatcgag taattaccgg cgccgaatga gccgccgatg atgacggtca
    11701 gtttgggcac ccgagtggtc gccaccgcgg tgaccatttt ggcgccgtgt ttggcgatcc
    11761 caccggcctc atactcccgg cccaccatga aaccggagat attctgcagg aataccagcg
    11821 ggatgccgcg ctggtcacac aattcgatga aatgcgcacc tttcagggcc gattcgctga
    11881 acaggattcc gttgttggcc acgatgccga ccgggtggcc gtgcagccgg gcgaaaccgg
    11941 tgaccaacgt catcccgtac tcggccttga actcggccaa acagctgcca tccacgatcc
    12001 ggtcgaccac ctcatggacg tcgtaagggg tgcgggaatc caccggcaca accccgtaga
    12061 tcccttccaa agaaggctcc tcggtgggga tcacctccca cggctggggc gctcggggcc
    12121 cgagggtgcc gacgatcgag cggacgatcc gcaacgcgtg agcgtcgtca tcagcgaggt
    12181 gatcggtgac ccc
//
LOCUS       DASVXZ010000896         5339 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1146310, whole genome shotgun sequence.
ACCESSION   DASVXZ010000896 DASVXZ010000000
VERSION     DASVXZ010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5339
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146310"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>5339)
                     /locus_tag="VF788_18840"
     CDS             complement(<1..>5339)
                     /locus_tag="VF788_18840"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8936194.1"
                     /translation="HAPRLPQLAVQYVDYAIWQRGLLSGAVLDTALDYWRRQLAGVPV
                     LELPTDRPRPAVVTTAGAVHEFVVPVEVTQPLKQLSQRVDGTLFMTLVAACQVLFSRW
                     SGQDDIAVGTVVSGRDRAELENLIGFFVNTLVLRSRIDPDHSFMQLLARVRETVLDAF
                     VHQQVPFERLVDELAPVRDTSRTPLFQAMVILQNAPGRTPDLIGLDVSGVDLPVTTTK
                     FDIAVEFHDGADQLVGAVQYNTDLFDAATIERMVGHLLVLLEGVAADPGRLVGQLPLL
                     TAGERDLLLAGWNDTDRLVSAVVLPELFAAQVARTPDAVAVVCGAEQLSYRELDERSN
                     RLARWLIGRGVGPEQFVGLALERSVGLIVALLGVAKAGSAYLPIDPNYPPARIEFMCA
                     DADPVMVLVTGKTSEVLPGDVTRVILDDPDIVAQIAGYSDAGVTDADRVARLHLLHPA
                     YLIYTSGSTGRPKAVVVTHAGLSNFVAAEVEQYQVRAGDRVLAMSSPSFDASVLELGM
                     SLLAGAVWVVPPSPEPLAGDSLVAILEQQRISHALIPPAALATIPAQVAASGLPEWRT
                     VIVGGDACSAELVTRWAPNRRMINSYGPTEATVVASWTPPLVAGDTRPPIGSPILNTR
                     AYVLDARLRPVPVGVAGELYVAGIGLARGYWHRPGLTATRFLANPFGAPGSRMYRTGD
                     VVRWLPDGQLDYLGRADEQVKIRGFRIELGEIETMLAAHPAVAEAVVVAHDDGTGTKR
                     LAGYVVPTGDDNPTAAQLRAHLGQALPDYMVPAAFITLDELPLGPTGKLDRKALPAPD
                     GAYQPVAEYVAPRSATEHTLAGIWAQVLGVDRVGIHDNFFELGGDSILSIQVVSWARR
                     AGVQVTTKDIFFHQTIAQLAASVEVEPLAEPVESELIAGPAPLTPIQEWFFATHGALP
                     YFNQSFVVELAEELDTDALCMALDAVIAHHAALRMRFVQQDGQWRQDVAPVETSQVLS
                     RHHLSDVPEQDRQEAMAHAALVAQSSLDITNGPVLRAVLFECGPGQRPWLFISIHHLV
                     IDGVSWRILLGDLESAYQQARSGHPVQLDPVGTPFTQWAHRFADYVRAGELDDDLEYW
                     SNLLHDAPPDLPITRSGSNTVDSTRTVTVRLDRQHTDALLHRVPGAYRTQINDVLLSA
                     LGRVLSMWTRQDRVLIAMEGHGREEILPAVELSRTVGWFTSQFPVALTIAPAAGWDEL
                     LKSIKEQLRAIPHRGLSYGALRYLIPGSPLWTDATPQISLNYHGQWDIAPDSSELYRS
                     GHSGLAPDQAPECTRPCLIDVIGVVTAGELQLSWTYSVNVHDEATITNLAEQMLQVLR
                     QIVVHCADPQAGGCTPSDFPLAKLSQTQLDHLVGNGRDVEDIYPLTPLQAGMLFHSLL
                     DGGSAAYVDQLRLRLSGINDPAALGTAWQRMLDRSPLLRSAVVWEGVEQPLQVVHRQV
                     TLPIAYHDWRELSEQQRDQQLKQIAAQERAGVNLSVPPLLRVAIAQLPEDEVFLVWTH
                     HHVVLDGWSLAEVFGEVVAQYSAIMHDCAPRLVTRRPFRDYLQWLNEQDQAQAEQHWR
                     VVLSGFDSRTPLPYDRQPRQAHRSESSESVGIQLGVQDTARLLQAAQRNGLTVNTIVQ
                     AAWALLLSRYSGQRDVVFGTTVSGRPAELVGVESMIGMFINTVPSRVRINDEQPLIVW
                     LRELQTAQVESQRFAFASLAQVQTYANLPAGSALFDSMFVFENYPFDADTVSSIGLGI
                     QEIHNRETTNLPLTVQASLRDRLSLHLGYDPHLFDAATIERMVGHLLVLLEGV"
BASE COUNT         1089 a         1787 c         1574 g          889 t
ORIGIN      
        1 aaccccctcc aacaacacca acaaatgccc caccatccgc tcgatcgtgg cggcatcaaa
       61 caggtgtggg tcataaccga ggtgcagtga gagccggtct cgaagtgagg cttgcaccgt
      121 cagcgggagg ttagtggttt cccggttatg gatttcttgt atccccaggc cgatagaaga
      181 aactgtatcc gcatcgaagg gatagttttc gaatacgaac atgctgtcga acaacgcact
      241 gccggcgggc agattggcgt aggtctggac ctgcgcaaga gaggcgaaag cgaaccgttg
      301 ggactcgacc tgcgcggttt gcaattcacg cagccacacg atcagcggtt gttcgtcgtt
      361 gatccgcacc cggcttggca cggtgttgat gaacatgccg atcatcgact ccacgcctac
      421 cagctcggcg gggcgcccgg atacggtggt cccgaacacg acgtcgcgtt gcccgctgta
      481 gcgagacagc agtagcgccc acgcggcttg cacaattgta ttgaccgtca ggccattgcg
      541 ttgagctgcc tggagcagtc gggcggtgtc ctggactccg agctggatgc ccaccgattc
      601 cgaggattcc gagcggtgcg cttggcgcgg ctggcggtca tatggcagcg gagtgcgcga
      661 gtcgaaccca gacagcacca ctcgccagtg ttgttcggct tgggcctggt cttgctcgtt
      721 gagccattgg aggtagtcgc ggaatggccg tcgggtgacg agccgcggtg cgcaatcgtg
      781 catgatcgcc gagtattgcg caacgacctc tccgaatact tcagccaagc tccaaccatc
      841 aaggaccaca tgatggtggg tccacaccaa gaagacttca tcttcaggca attgcgcgat
      901 cgccacgcgg agcaacggtg gcacgctgag gttgacaccg gcgcgttctt gcgccgcgat
      961 ctgcttcagt tgctgatcgc gctgctgctc ggagagttcc cgccagtcgt ggtacgcaat
     1021 cggcagcgtg acctgccggt gcaccacctg cagcggctgc tcgacgccct cccagacaac
     1081 ggcgctgcgc aacagcgggc tgcgatcgag catccgctgc caagccgtac ccagcgccgc
     1141 cggatcgttg atccctgaga gccgcagccg gagctggtct acataggctg cggacccccc
     1201 gtcgagcaag ctgtggaaca gcatgcctgc ttgtaatggt gtcagcgggt aaatatcttc
     1261 tacatcccgg ccgttcccca caagatgatc gagttgcgtc tgggacagct tggccaacgg
     1321 gaagtcagac ggtgtgcagc caccagcctg cgggtcggcg cagtggacca caatctgccg
     1381 tagcacctga agcatctgct cagccaggtt cgtgatggtg gcctcatcgt gcacgtttac
     1441 cgaataggtc cagctcagtt gcaattcacc ggcggtgact accccaatga catcgatgag
     1501 gcacggacga gtgcattcgg gtgcctgatc gggcgccagc ccactatggc cacttcggta
     1561 aagctcgctg gagtccgggg ctatgtccca ttgtccgtgg tagttcaggc tgatttgtgg
     1621 ggtggcatca gtccatagtg ggctgccggg gatcagatag cgcagcgccc cgtagctcag
     1681 cccccggtgc gggatggccc gcagctgttc cttgatggat ttgagtagct cgtcccagcc
     1741 ggccgctggc gcaatggtaa gggccaccgg gaattgtgag gtgaaccagc ccacggtgcg
     1801 cgaaagctcc accgcaggca ggatctcctc gcggccgtgt ccttccatcg cgatgagaac
     1861 gcgatcttgc ctggtccaca tggacagtac ccggccgagg gcgctgagca gtacgtcgtt
     1921 gatctgggtg cggtatgccc caggcacccg gtgcagcaat gcatcggtgt gctggcgatc
     1981 caaccgcacc gttaccgtgc gggtggagtc aaccgtgttg ctgccggacc gggtgatggg
     2041 gaggtcaggc ggggcatcgt gcaagaggtt cgaccagtac tccaggtcat catcaagctc
     2101 gccggcacgg acgtagtccg cgaatcggtg ggcccattgg gtgaatgggg tgccgaccgg
     2161 atccaattgc accggatgcc cggatcgagc ctgctggtag gccgattcga gatcgccgag
     2221 caggatccgc cacgacactc cgtcaatgac caggtgatga atgctgatga acagccaggg
     2281 ccgctggcca ggtccgcact cgaacagtac cgctcgcagc accgggccgt tggtgatgtc
     2341 caagctggac tgagcgacca gggcggcgtg cgccatggct tcttgcctgt cctgctccgg
     2401 tacgtcagaa aggtgatgcc gacttaatac ctggctagtc tcgaccggtg caacgtcttg
     2461 acgccactgg ccatcttgct ggacaaagcg catccgcaac gccgcatggt gcgctatcac
     2521 cgcatccagg gccatacaca atgcatccgt gtcaagctct tcagctagct ccacaacaaa
     2581 ggactggttg aaatacggca gcgcaccatg tgtggcaaaa aaccattcct gaattggcgt
     2641 caacggcgcc ggaccggcaa tgagctcgct ttccaccggt tctgccagcg gctccacctc
     2701 aacactggcc gcaagctgag caatagtctg gtggaagaag atgtccttgg tcgtgacctg
     2761 cacaccagca cgacgggccc acgatacgac ttggatgctg aggatggagt cgccgccgag
     2821 ttcgaagaag ttgtcgtgga tgccgacccg gtccacccca aggacctggg cccagatgcc
     2881 cgccagggtg tgttcggtgg cgctgcgtgg ggccacatac tccgcgaccg gctggtaggc
     2941 accatcggga gcgggtaggg ctttgcggtc gagtttgccg gtcggaccta acggcagttc
     3001 atcgagggtg atgaacgccg cgggcaccat gtagtcgggc aaggcctggc ccaggtgggc
     3061 gcgcaactgc gcggctgtgg ggttgtcgtc accggtgggg acgacgtagc cggccaggcg
     3121 tttggtgccg gtgccgtcgt cgtgggcgac cacgaccgct tcggcgacag ccgggtgtgc
     3181 cgcgagcatg gtttcgattt cgcccagttc gatgcggaac ccgcggattt tgacctgctc
     3241 atcggcgcgg cccaggtaat ccagttgccc gtcgggcagc cagcgcacca cgtcccccgt
     3301 gcgatacatc cggctgcccg gcgcgccgaa cggattggcc aggaaacgag ttgcggtcag
     3361 ccccgggcgg tgccaatagc cgcgggccag cccgatcccg gcgacgtaca gctccccagc
     3421 caccccgacc ggcaccgggc gcagccgggc atccagcacg taggcccggg tgttgaggat
     3481 cggtgacccg atcggtgggc gcgtgtcccc tgccaccagc ggtggggtcc agctggccac
     3541 cacggtggcc tcggtaggcc catacgagtt gatcatccga cggttcggcg cccaccgggt
     3601 caccaactcc gcgctacaag catccccacc cacgatcacc gtgcgccact ctggcaaccc
     3661 ggacgcggcc acctgcgccg ggatcgtggc caacgccgcc ggcgggatca acgcatgact
     3721 gatccgctgc tgctccaaaa tggccaccag gctgtcccca gccaacggct ccggactcgg
     3781 cggcaccacc cacaccgcac cggccagcaa cgacatcccc aactccagga ccgaggcatc
     3841 aaaactcggc gacgacatcg ccaacacccg atcacccgca cgcacctggt actgctccac
     3901 ctccgcggcc acaaagttgc tcaaccccgc atgcgtgacc accaccgcct tgggccgccc
     3961 cgtcgacccc gaggtgtaaa tcagatacgc cggatgcaac aaatgcagtc gcgctacccg
     4021 gtcggcatcc gtcacgccag cgtcagaata acccgcaatc tgagcaacga tatcgggatc
     4081 atccaggatg acccgagtca catcccccgg caaaacctcc gacgttttcc cggtcaccaa
     4141 caccatcacc gggtcggcgt cagcacacat gaactcaatc cgggccggtg gatagttggg
     4201 atcaatcggc agatacgccg atccagcctt ggccaccccc aacaacgcca caataagacc
     4261 aacagagcgc tccagcgcca accccacaaa ctgctccgga cccaccccgc gcccgatcaa
     4321 ccagcgcgcc aggcgattcg accgctcatc caactcccga tacgacaact gctcagcccc
     4381 acacaccacc gccaccgcat ccggcgtacg cgccacctgc gcagcaaaca actccggcaa
     4441 caccaccgcc gacaccaacc ggtcagtgtc attccaccca gccaacagca gatcccgctc
     4501 acccgccgtc aacaacggca actgccccac caaccgacca ggatcagcag caaccccctc
     4561 caacaacacc aacaaatgcc ccaccatccg ctcgatcgtg gcggcatcaa acaaatcagt
     4621 gttgtactgc accgcgccga ccagctggtc agcgccatca tggaactcca cagcgatgtc
     4681 gaacttcgtg gtcgttacgg gcaaatcaac accggaaaca tctagcccga tcaggtctgg
     4741 ggtgcgcccg ggggcgtttt gcaaaatgac catggcctgg aacaacggcg tccggctggt
     4801 atcccgcacc ggggccagct catcgactaa ccgctcaaac ggcacctgct ggtgcacgaa
     4861 agcatccagc acggtctccc gaacccgagc caacaactgc atgaaactgt gatcgggatc
     4921 aatccgcgaa cgcaagacca gggtattgac gaaaaagccg atcaggtttt ccagctcggc
     4981 ccgatcccgg cccgagacca ccgtgcccac cgcaatatcg tcctgacccg accagcgact
     5041 gaacagcacc tgacacgctg ccaccaacgt cataaacaac gtgccatcca cccgctgact
     5101 gagctgtttg agcggctggg tgacctcgac cggaaccacg aactcgtgca cagcccccgc
     5161 ggtggtcacc accgcgggac gcggccggtc agtcggcaac tccagcaccg gcaccccagc
     5221 caactggcga cgccaatagt ccagcgcagt atctagcacc gcaccggaca gcagtccccg
     5281 ctgccagatc gcgtaatcga catactgcac cgccaactgc ggcaaccgcg gcgcatgac
//
LOCUS       DASVXZ010000897         2450 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1051058, whole genome shotgun sequence.
ACCESSION   DASVXZ010000897 DASVXZ010000000
VERSION     DASVXZ010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1051058"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VF788_18845"
     CDS             <1..244
                     /locus_tag="VF788_18845"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8936195.1"
                     /translation="LSVPLLLLHGTDDQICPLVGSIMVHDAVSSPDRTLRRYPGLYHE
                     VFNEPEREAILTDLICWLDDRSLPHSPGAAGLLQCE"
     gene            complement(278..667)
                     /gene="rplL"
                     /locus_tag="VF788_18850"
     CDS             complement(278..667)
                     /gene="rplL"
                     /locus_tag="VF788_18850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEX8936196.1"
                     /translation="MAKMSTDDLLDAFKDMTLLELSDFVKKFEDTFDVTAAAPVAVAA
                     GPVGGAAEAPAAEEKDEFNVVLEAIGEKKIQVIKVVREVVSGLGLKEAKDLVESAPKP
                     ILEGVPKDQAEAAKAKLEEAGAKVSLT"
     gene            complement(731..1276)
                     /gene="rplJ"
                     /locus_tag="VF788_18855"
     CDS             complement(731..1276)
                     /gene="rplJ"
                     /locus_tag="VF788_18855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEX8936197.1"
                     /translation="MARPDKVDAVADIAEEFRNATATVVTEYRGLSVTQLTNLRRSLG
                     TDTTYRVAKNTLVSRAARDAGVEGLDELFIGPTAIAFVHGEPVLAAKALRDFAREHNA
                     LVIKGGYLDGRALTVAEVARMADLESREVLLAKLAGAMKANLSKAARLFAEPASQVAR
                     LAAALRDKQQEQQPTGEHAED"
     gene            complement(1657..2373)
                     /gene="rplA"
                     /locus_tag="VF788_18860"
     CDS             complement(1657..2373)
                     /gene="rplA"
                     /locus_tag="VF788_18860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEX8936198.1"
                     /translation="MKRSKAYRQAAEKVDRSRLYSPLEAAALAKETSTTSMDATVEVA
                     MRLGVDPRKADQMVRGTVNLPHGTGKTVRVIVFASGDRAAEAEAAGADAVGSEDLIAR
                     IQGGRLDFDAAIAAPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVAKAVADIKGGKI
                     NFRVDKQSNLHLVIGKVSFDADKLVENYAAALDEVLRAKPSAAKGRYLQKVNFSTTMG
                     PGIPVDPNRTRNLMIDEAAS"
BASE COUNT          383 a          832 c          773 g          462 t
ORIGIN      
        1 cctgtcggtg ccgctgctgc tcctgcacgg caccgacgac cagatatgcc cgctggtcgg
       61 ctcgatcatg gtgcacgacg cagtgtcgtc ccccgaccgg acgctgcgcc gctaccctgg
      121 cctctaccac gaagtgttca acgagcctga gcgcgaggcg atcctcaccg acttaatctg
      181 ctggctcgac gatcgatctc ttccgcattc accgggcgca gcggggctat tgcagtgcga
      241 atagccccgc tgcgcccggt gaatgacgtt gccgagctca ggtcaggctg accttggcgc
      301 cggcttcctc cagctttgct ttggcggctt cggcctggtc cttcggaacg ccttccagga
      361 tgggcttggg agcgctctcg accaggtcct tggcctcttt gaggcccagg ccggagacaa
      421 cctcgcggac caccttgatg acctggatct tcttttcccc gatggcttcg aggacgacgt
      481 tgaactcatc cttctcctcg gcagcgggcg cttcggcagc tccaccgacc ggacccgccg
      541 cgaccgcgac cggcgccgcg gcggtgacgt cgaaggtgtc ctcgaacttc ttcacgaaat
      601 cgctcagctc gagcagcgtc atgtccttga acgcatcgag cagatcgtcg gtgctcatct
      661 tcgccatgat ggcgtctctc cttctgtgat ctttggatcg tcttgtgtcg ttcggtggac
      721 gcggtcgcga tcagtcctcg gcgtgctcgc cggttggctg ctgctcttgc tgcttgtccc
      781 gcagggccgc tgccagccgg gcgacctggg aggccggctc agcaaacaac ctggcggcct
      841 tggagaggtt cgccttcatc gcaccggcca gcttggccag cagcacctca cgcgactcca
      901 gatccgccat ccgggctact tcggcaacgg tgagcgcccg tccgtccagg tacccgccct
      961 tgatgacgag agcgttgtgc tcacgggcga aatcacgcag cgccttggcc gcgagcaccg
     1021 gctcaccgtg gacgaacgcg atcgcggtcg gaccgatgaa cagctcatcg agaccttcca
     1081 ccccggcgtc tcgcgccgcc cgcgacacca aggtgttctt ggcgacccgg taagtggtgt
     1141 cggtcccgag ggaacggcgc aggttggtca gctgcgtcac ggacaggccg cggtactcgg
     1201 tcacgaccgt ggccgtggcg ttgcggaact cctccgcgat atcggcaacg gcatcgacct
     1261 tgtccggtct agccatggat cgcctccttg gttagctcgc cggctgaacc ggcggggaaa
     1321 tcactgccgg ctcagccggt gagtgggtcc gtgtggtgcg actgctgacc tgaacgggct
     1381 cactcggtgc gcccatgcgt gacccgggcc ctaaaatgac gaacgccccg gcgcagcagg
     1441 cgcggggcga agccagcggc gcaccatggc gccacatgac ggcacaacca catcctcctg
     1501 cgcgggccgc ccgcatttcg cgggaccttc gtagcgtgcc aggtgcacgc cagaccagcg
     1561 gtcttcggtg gaactgcggt cagcctaggc caaccacatc actcccgcca aaccagcccc
     1621 cagaacctgc gagagaggtt ccagttgggc ggtgcttcag gaagcggctt cgtcgatcat
     1681 gaggttgcgg gtccggttgg gatcgaccgg aataccgggg cccatggtcg tagagaagtt
     1741 gaccttctgg aggtagcgac ccttggcagc cgacggcttg gctcgcagca cctcgtcgag
     1801 ggcagccgca tagttctcca ccagcttgtc ggcgtcgaac gagaccttgc cgatgaccaa
     1861 gtgcaggttg gactgcttgt ccacccggaa attgatctta ccgcccttga tgtccgcgac
     1921 ggccttggcg acgtcgggag tcaccgtgcc ggtcttcggg ttgggcatca agccgcgcgg
     1981 gcccaggatc cgggcgatcc ggcctacctt ggccatctgg tccggagccg cgatcgcggc
     2041 atcgaagtcg agccggccgc cctggattcg ggcgatgagg tcctcggagc cgaccgcgtc
     2101 ggcaccggcc gcttcggcct cggcagcgcg atcaccgctg gcgaagacga tgacgcggac
     2161 ggtcttgccg gtgccgtgcg gcaggttcac cgtgccgcga accatctgat cagccttgcg
     2221 gggatcaaca cctaaccgca tggccacctc gacggtggcg tccatcgacg tcgtggaggt
     2281 ctccttggcc agcgccgcag cctccagcgg gctgtacagc cggctacggt caactttttc
     2341 ggcagcctgc cgataggcct tactgcgctt catctcactg ccctctcagg gatcagtcgt
     2401 ggtgcggacc agcgcctggc cctgccacat ttaattggca cgtacctaac
//
LOCUS       DASVXZ010000898        11121 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1146569, whole genome shotgun sequence.
ACCESSION   DASVXZ010000898 DASVXZ010000000
VERSION     DASVXZ010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 11121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11121
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146569"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..618)
                     /locus_tag="VF788_18865"
     CDS             complement(<1..618)
                     /locus_tag="VF788_18865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8936199.1"
                     /translation="MRRSAAPARDAQLIERTVFEIQRVIVGQDRLVERMLVGLLARGH
                     LLLEGVPGVAKTLAVETVARVVGGTFSRIQFTPDLVPADILGTRIYRQGREQFDVELG
                     PVMANFVLADEINRAPAKVQSAMLEVMAERHVSIGGQTFPMPDPFLVLATQNPIENEG
                     VYPLPEAQRDRFLFKIIVEYPTAEEEREIVYRMGVKPPEPHQVLSP"
     gene            complement(797..2140)
                     /locus_tag="VF788_18870"
     CDS             complement(797..2140)
                     /locus_tag="VF788_18870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HEX8936200.1"
                     /translation="MSVRTRSRLPCRALVAGLLTVVALVGQPGIGQAVPPPPPNPSDD
                     DLKSSQSHVNATATRVGQLANQVAQADAALLALQSQVELKHELANKALIDQQAADATA
                     AAATHAADSSRAEADAAAAQIAVAHRDLDQFAAASFRQGTTVGSLSAFLGSKSPKDLL
                     ARAELLEAVGGAQLHAVENMRRTRVDAANKDSQTRAALAAAQVAQRAAADAKTALDSA
                     YRIAIDTEASQSAQSKSLQDKKADLERQLYEAQNAAAGLRGQRQRYEEWRAERDREQA
                     AAAAAAAAAAAAAERSAASVGGSTGGARAVAVDVGSVINRAMAQLGVRYSWGGGNGAG
                     PTIGVRDGGVADTYGDFRKVGFDCSGLMIYAFSRALGYSLPHYSGFQYNAGRKIPLAQ
                     KRPGDMLFWGTAGDIHHVALYIGGEQMIEAPYSGAAVRVASVRYTEIMPYAVRVL"
     gene            complement(2417..3955)
                     /locus_tag="VF788_18875"
     CDS             complement(2417..3955)
                     /locus_tag="VF788_18875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003054889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8936201.1"
                     /translation="MRVPLIVADFLARGETAFAQSVAVVDESIQPAPPVAISTYEQLG
                     RRVRAWQAGLDALRVGEGERVAVVSHNSTRMLELLHAVPASGRICVPVNFRLRADEVN
                     YIVSHSGASVLLVDPELDEPLKAVAAPYRFVLGGETEEQVMRFEVEPRPWAEPDEDAT
                     ATINYTSGTTARPKGVQLTHRNIWINAVTLALHTRAWERDVYLHTLPMFHCNGWGMPF
                     GLAGLGARQIVLRKVDGAEILRRVEKHGVTLMCGAPAVWHAVLETAASWDGEIPGRGR
                     VRLVCAGAPPPTRVIKRVGEELGWEFMQIYGLTETAPLLTFNRGAAADEDLPHEERAR
                     KLSRAGAPALGVQLRTSEVGEVLARSNVVMAGYWDSPQASSEVLMDGWFHTGDGGSMD
                     DQGYLCITDRKKDVIITGGENVSSIEVEDCLFSHPAVAEVAVIGVPSDRWGEAVKALV
                     VVAAGEQVTEKEIIAYCKERLAGYKTPTSVEFRDVIPRTATGKIQKFKLRQEYWEGRE
                     HQVD"
     gene            4238..7084
                     /locus_tag="VF788_18880"
     CDS             4238..7084
                     /locus_tag="VF788_18880"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020659398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HEX8936202.1"
                     /translation="MTHAATSADSFGARGMLSVGTACYEVFRLAELDRRLGTQWRNLP
                     YSLKVLLENLLRCESRAASAHVRAEHIEALAGWDAQAQSSTEIQFTPARVIMQDFTGV
                     PCLVDLATMREAVTALGGDPQAVNPLAPAELVIDHSVIADVAGRPDAFERNVELEYQR
                     NRERYQFLRWGQGAFDEFRVVPPGTGIVHQVNLEYLARVVTTRHGLAYPDTVVGTDSH
                     TTMVNGLGVLGWGVGGIEAEAAMLGQPVSMLIPRVVGCKLIGSIPAGATATDVVLTLT
                     QMLRRHGVVGKFVEFYGEGVAAVPLANRATIGNMSPEFGSTCAIFPIDEETIRYLQLT
                     GRPAEQVALIEAYAKEQELWHDPSREPTYSEYLELDLSTVVPSIAGPKRPQDRIALSD
                     GKVTFRRALVGYARPAQSPVDEAGLESFPASDAPAVSGDDGAEESGTAISTTAAAQGR
                     ASSPTPVRPAGSAGYEIDHGSVVIASITSCTNTSNPSVMIGAALLARNAVEAGLAVKP
                     WVKTSMAPGSQIVTDYYEKAGLWPYLEKLGYHLVGYGCTTCIGNSGPLPEEVSEAIHN
                     ADLAVVSVLSGNRNFEGRINPDVAMNYLASPPLVVAYALAGTMDVDFERDPLGLDREG
                     NPVYLADIWPSPEEVQKVIEFAISQEMFTKDYADVFAGDARWQSLQTPEGKTFTWDPD
                     STYVRKPPYFDGMTAQPPAVTDITGARVLAMLGDSVTTDHISPAGAIKVDSPAGRYLA
                     ERGVERKDFNSYGSRRGNHEVMIRGTFANIRLRNLLLENISGGYTRDFTASGTESMDA
                     ISIYDAAQRYAEAGIPLLVLGGKEYGSGSSRDWAAKGTGLLGVRAVLAESFERIHRSN
                     LIGMGVLPLQFPDGESASSLGLDGTETFDITGVTALNNGSSPATVHVTATREGIDPVE
                     FDAVLRIDTPGEAEYYRNGGILQYVLRAMARKGS"
     gene            complement(7079..7537)
                     /locus_tag="VF788_18885"
     CDS             complement(7079..7537)
                     /locus_tag="VF788_18885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEX8936203.1"
                     /translation="MEPRFSLAELNSDLYRRMAALNSAVEHCGLERQLLGLIKMRASQ
                     INGCAYCLDMHSKDARAMGETEQRLYALNAWRETAFYTERERAALALTEAITLITDGH
                     VSDAVYKEARRVFDEKEVSQLIWAAAVINTWNRLAISARSVPAPESSAHS"
     gene            complement(7591..8124)
                     /locus_tag="VF788_18890"
     CDS             complement(7591..8124)
                     /locus_tag="VF788_18890"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEX8936204.1"
                     /translation="MDHCERCSFHYDQLEINEVSEELRSLGTAYRSRLEAGVHDAEHA
                     RLLRRRPMPQVWSALEYSCHFRDVLLAQRERLHLALVEDTPRFWSIYRDERVVLARYS
                     DDSLEEVSREVDLAASLAARAFARLDDAQWQRRCVHGYPAPAQRTVAWLGRHTVHEGR
                     HHLLDVDDAIRAARSGG"
     gene            8286..9272
                     /locus_tag="VF788_18895"
     CDS             8286..9272
                     /locus_tag="VF788_18895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020419717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8936205.1"
                     /translation="MKIALVGKGGSGKTTLAALFVRHLVAADRPVLAVDADINQHLAV
                     ALGATEAGSAALPTLSAQLPLIKDYLRGANPRIASAAVMVKTTPPGAGSRLLRVVERN
                     PIYDACVREVGGVRLSVTGSFAEEDLGVACYHSKVGAVELLLNHLVDDVDEYVVVDMT
                     AGADSFASGLFTRFDVMFLVCEPTLRSVGVYRQYRAYAHDFGVRIAVVGNKVSDEDDA
                     TFLREQIGSDLVGWVSRSAHVRAAERGQIPPISTLEPANAATLDVMRKTVDSTTKDWQ
                     TYQSQAVEFHLRNAAAWANDRTGCDLADQVDPDFIHGPGALARSGQLPSSTP"
     gene            complement(9243..10127)
                     /locus_tag="VF788_18900"
     CDS             complement(9243..10127)
                     /locus_tag="VF788_18900"
                     /inference="COORDINATES: protein motif:HMM:NF013143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX8936206.1"
                     /translation="MTWPPFLLHALLAGTAIAAAAGLVGYFVVLRVQVFTGDALSHVA
                     FTGALAALALGIDERLGLFAATIGVGLALGALGDRGRADDVAIGSVFAWILGLGVFFL
                     TLFTTTHSAGNGNAGVNVLFGSIFGLALSEAVTAAIVAAVIVAVMVAIARPLLFASVD
                     GAVAAARGVPVRLLGYGFLALVGAAAAEATQAVGALLLLGLLAAPAGTAQRLTARPYP
                     ALFISAGLAVAAMWGGLVLSYTVPALPPSFAILAVATGGYALALLGTRRRHSLTPVMT
                     SPALSPEVRSRRAGRELS"
     gene            complement(10124..11029)
                     /locus_tag="VF788_18905"
     CDS             complement(10124..11029)
                     /locus_tag="VF788_18905"
                     /inference="COORDINATES: protein motif:HMM:NF013143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX8936207.1"
                     /translation="MILAAGPSWNPITDLQQMWSFPFMVNAFRAGTIVAVLAGAMGHF
                     MVLRRQSFAGHTLSLIGFPGAAGAVLIGVAATYGYFAFCLAGALVIAALPRTGRGGYS
                     EESAVTGTVQALALACGFLFVTLYKGFLNSINALLFGSFLGITGEQVAVLGVVALVSL
                     IILGMIGRPLAFASIDPDVAAARNVPVRALSITFLVLLGGATAEVSQITGTLLVFALL
                     VMPAATAQALTARPFTALALTILIGLVVTWLGLSVAYYIPYPVGFYVTSFAFAGYVGS
                     QMVRHTRSRCRATGTITTPAAGIAP"
BASE COUNT         2011 a         3725 c         3551 g         1834 t
ORIGIN      
        1 gggcgagagc acctggtgcg gctcgggagg cttcacgccc atccggtaga cgatctcgcg
       61 ctcttcctcg gccgtcgggt actcgacgat gatcttgaag aggaaccggt cgcgctgcgc
      121 ctcgggcagc gggtacacac cttcgttctc gatcgggttc tgggtggcga gcaccaggaa
      181 cgggtcgggc atcgggaacg tctggccgcc gatcgacacg tgccgctcgg ccatcacctc
      241 gagcatcgcc gactgcacct tcgcgggcgc gcggttgatc tcgtcggcga gcacgaagtt
      301 cgccatcacc ggtcccagct ccacgtcgaa ctgctcgcgg ccctgccggt agatccgggt
      361 gcccaaaatg tcggcaggaa ccaggtcagg ggtgaactgg atgcgcgaga acgtgccacc
      421 caccactcgg gcgacggtct ccaccgcgag agtcttggct acccccggca cgccttcgag
      481 cagtagatga ccgcgggcca agagaccgac gagcatcctc tcgaccaacc gatcctgtcc
      541 cacaatcacc cgctggatct cgaacaccgt ccgctcgatc agctgggcgt cccgcgctgg
      601 ggcagccgac ctcctcaacg atgagttgga cgctggtggg gtcgccccgc cgtcgacgtc
      661 gctcacgggt cctcctcgca cagggtccgg ctcgggcgca cacctggcgc accgtgacag
      721 caacaacaac taggacacca cggttgcggg atccagccag acccaaccgc tgcgccggtg
      781 tggcggctgt gaaggtttac agcacccgca cggcgtaggg catgatctcg gtgtagcgca
      841 ctgatgccac acgcaccgca gcccccgagt acggcgcctc gatcatctgt tcgccgccga
      901 tgtacagggc cacatgatgg atgtctccgg ccgtgcccca gaacagcatg tcaccggggc
      961 gcttctgcgc cagcggaatc ttgcgaccgg cattgtactg aaaaccgctg tagtgcggta
     1021 gcgaataacc aagggcgcga gagaaagcgt agatcatcaa gcccgagcag tcgaagccga
     1081 ccttgcggaa atcgccgtag gtatcagcaa ctccaccgtc ccgaacgccg atcgtgggcc
     1141 ctgcgccgtt accaccaccc cacgagtagc ggacaccgag ctgcgccatc gcccgattga
     1201 tcaccgagcc aacatcgacg gcaacggccc gagccccacc agtacttcct ccaacactgg
     1261 ctgcgctgcg ctcggctgcc gcggcagccg ccgcagccgc cgccgcggca gccgcctgct
     1321 cgcgatcccg ttctgcgcgc cactcctcat agcgttgccg ctgccctcgc agtcccgcgg
     1381 cggcgttttg cgcctcgtag agctgccgct ccaggtcggc cttcttatct tgcagggact
     1441 tggactgtgc cgactgcgac gcttcggtgt cgatggcgat ccggtatgcg ctgtccagtg
     1501 ctgttttggc gtcggcggca gcccgctggg caacctgagc cgcagccaac gccgcccgag
     1561 tctgggaatc cttatttgct gcatcgacgc gggttcgccg catgttctct accgcgtgga
     1621 gctgcgctcc tccaacagct tcgagcagct cggcgcgagc gagcagatcc tttggacttt
     1681 tcgaaccgag gaatgccgaa agtgatccga ccgtcgttcc ctgccggaaa ctggccgcgg
     1741 caaattggtc gaggtcccga tgcgcgaccg cgatctgcgc agcagccgca tcggcctccg
     1801 cacggctgct gtcggccgcg tgggtcgcgg cagccgcggt ggcgtccgcg gcctgctggt
     1861 cgatcagcgc cttgttagca agctcgtgct tgagctcaac ctgcgactgc agggccagca
     1921 gggcggcgtc ggcttgggcg acctgattcg ccagttgccc gacccgcgtc gcggtggcgt
     1981 tgacatgaga ttggctggac ttgaggtcgt cgtcgctagg gttgggcggg ggcggcggca
     2041 cggcttgccc gatgccgggc tgcccaacca gcgcgaccac cgtgagtaaa cctgcgacca
     2101 acgcacggca cggcaggcga gaccgagtcc ggacgctcac acccactcct tggctcctgt
     2161 ctgcaggcgc cggcctccct gagatccggc aaaccttgtt gagctgacac gcggatgcac
     2221 tgtgtcatgt acacctcaca gacaccaacg tcccctcgca taactttcgc aacatccacc
     2281 acatgtgtta cagaccggca ggctttgtca cgcagtgtga tccactcgct gaagggggct
     2341 cagcaaaccg tcgacggatt agggggaagc gacggccagg acgacgaccc aagaaggacg
     2401 ccaaaagaag tggcggtcag tccacctggt gctcccggcc ctcccaatac tcctggcgca
     2461 acttgaactt ctggatcttg ccggtggccg tacggggaat gacgtcacgg aactccactg
     2521 atgtcggcgt cttgtagccg gccagccgtt ccttgcagta ggcgatgatc tctttctcgg
     2581 tgacctgctc ccccgcggcc accacgacca gtgccttaac cgcctccccc caacgatcgg
     2641 agggcactcc gatgaccgct acttcggcca cagccgggtg gctgaacagg caatcctcca
     2701 cctcgatgga ggagacgttc tcgccgcccg tgatgatcac gtctttcttc cggtcagtga
     2761 tgcagaggta gccctggtca tccatcgagc cgccgtcacc ggtgtgaaac caaccatcca
     2821 tcagcacttc actgcttgcc tgcgggctgt cccaatagcc ggccatcacg acattcgatc
     2881 gggccagtac ctcaccgact tccgacgtac gcagctgcac ccccaaggct ggggcaccgg
     2941 cgcgggacag cttgcgggcc cgctcttcgt gaggtaggtc ctcatcggcc gctgcgccac
     3001 ggttaaaggt cagcagaggt gcggtctcgg tgagcccgta gatctgcatg aactcccatc
     3061 cgagctcctc gccaacccgt ttgatcaccc gggtcggtgg cggcgcacct gcgcatacca
     3121 gccgcacccg cccgcgaccc gggatctcac cgtcccagct cgcggcggtc tccaacaccg
     3181 cgtgccacac cgcgggggcg ccacacatca aggtcacgcc gtgtttctcg acccgccgca
     3241 ggatctcggc accgtccacc ttgcgcagca cgatctgccg agcccctaac ccggcgagcc
     3301 cgaacggcat gccccagccg ttgcagtgga acatcggcaa ggtgtgcagg tagacatcgc
     3361 gttcccaggc acgggtgtgg agggccaagg tgaccgcgtt gatccagatg ttgcggtggg
     3421 tcagctgcac gcccttcggc cgagcagtgg tgcccgaggt gtagttgatc gtcgccgtgg
     3481 cgtcctcgtc gggctcggcc cacggtcgcg gctcaacctc gaaccgcatc acctgctcct
     3541 cggtctcgcc cccgagtaca aaacggtacg gggcagccac cgccttaagc ggctcgtcga
     3601 gttcagggtc gacgaggagc accgacgcgc cactgtgcga gacgatgtag ttcacctcgt
     3661 cggcgcgaag ccggaaattc accggcacgc agatccggcc gctggccggc accgcatgca
     3721 gcaactcgag catccgggtc gagttgtggc tgaccaccgc cacccgctcg ccctcgccca
     3781 cccgaagtgc gtccaggcca gcttgccagg cgcgaaccct gcggccgagt tgctcatagg
     3841 tcgatatcgc tacgggtggc gctggctgga tggactcgtc cacgaccgcg acggattgtg
     3901 cgaacgccgt ctcgccgcga gccagaaagt cggcgacgat caaaggcacc cgcatcggtc
     3961 gccacctccg gcatggtctt gttcagatgc ggctctcagg gtatgtccac tcgccctaac
     4021 tgcgcctcaa caatgtttgg ccgcccgggg tcagggacgc cggagcacca ccatgcacat
     4081 ggcggtcaca ctgcggagag ggcacgtcgg gttacgacga tcgccctagt gctttacctc
     4141 ggtgttaatg cttcgcccgc taaacccacc agcaaggggt cggacgtaga gtcacggctg
     4201 acggcactac accagtttct caccagcgga ggagccagtg acccacgcag caaccagcgc
     4261 cgacagcttc ggcgcccgcg gcatgctctc cgttggaacg gcgtgctatg aggtattccg
     4321 attggcggag ctggaccggc ggctgggtac ccaatggcgc aacctgccgt acagcctgaa
     4381 ggtcttactg gagaacctgc tgcgctgtga gtcgcgagct gccagtgcac atgtccgcgc
     4441 agagcacatc gaggcactcg ccggctggga cgcccaagcg caatcgtcca cggagatcca
     4501 gttcactccg gcccgggtca tcatgcagga cttcaccggg gtgccctgcc tggtcgatct
     4561 ggccacgatg cgcgaggcgg tcacggcact cggcggtgat ccacaggcgg tcaacccgct
     4621 ggcccctgct gagctggtca tcgaccactc cgtaatcgcc gatgtggccg gccgcccgga
     4681 tgccttcgag cgcaatgtcg agctcgagta ccagcgaaac cgggagcgct accagttcct
     4741 gcggtggggg cagggcgcct tcgacgagtt ccgagtggtc ccgccaggta ccgggatcgt
     4801 gcaccaggtc aacctcgaat acctggcccg ggtagtcacg acccgccacg gcctggcata
     4861 tccagacacc gtggtgggca ccgacagcca caccaccatg gtcaacgggc tcggcgtgct
     4921 ggggtggggc gtgggcggca tcgaagctga ggccgccatg ctcggccagc cggtgtcaat
     4981 gctcatccca cgggtggtcg gttgcaagct catcggatcc attcccgcgg gggcaaccgc
     5041 cactgatgtg gtgctcaccc tgacgcagat gctccgccgg cacggcgtgg tcgggaagtt
     5101 cgtcgagttc tacggcgagg gtgtggcggc ggtgccgctg gccaaccgcg ccaccatcgg
     5161 caacatgagt cccgagttcg gctccacctg cgcgatcttc ccgatcgatg aggaaacgat
     5221 ccgttacctg caactcactg gtcgtcccgc tgagcaggtc gcgctcatcg aggcctacgc
     5281 caaggagcag gagctctggc acgatccgag ccgggagccc acctactccg agtaccttga
     5341 gctggacctg tccaccgtgg tgccctccat cgccggaccc aaacgtccgc aagaccggat
     5401 cgcgttatcc gatggcaagg tgacgtttcg ccgggcactg gtcggctacg cccgccccgc
     5461 gcaatctccg gtggacgagg ccggcctcga atccttcccc gctagcgacg cacccgcggt
     5521 aagcggcgac gacggcgccg aagagtcggg tacggcaatc tccacgaccg ccgctgcgca
     5581 gggccgcgcc agctcgccga cacccgtgcg acctgccggg agtgccggct acgagatcga
     5641 ccacggttcc gtggtgatcg cctcgatcac ctcgtgcacc aacacgtcca atccgtcggt
     5701 gatgattggt gcggcgctgc tggcccgcaa tgcagtcgag gcaggcctgg ccgtcaaacc
     5761 atgggtgaaa acgtcgatgg cgcccggctc ccagattgtc acggactact acgagaaagc
     5821 cgggctatgg ccttatctgg agaagcttgg ttaccacctg gtcggctacg gctgcaccac
     5881 gtgcatcggc aactccggac cgctgcctga ggaagtctcg gaagcgatcc acaacgctga
     5941 cctcgccgtg gtgagcgtgc tgtccggcaa ccgcaacttc gagggccgca tcaatccgga
     6001 cgttgcgatg aactacctcg cctcaccgcc attggtggtc gcctacgcgc tggcaggaac
     6061 gatggacgtc gacttcgagc gggaccccct aggacttgat cgcgaaggaa acccggtcta
     6121 tctcgccgat atctggccct cgccagaaga ggtgcaaaag gtgatcgagt tcgcgatcag
     6181 ccaggagatg ttcaccaagg actacgccga tgtcttcgct ggcgacgctc gctggcagtc
     6241 gttgcaaacc ccggaaggca agaccttcac ctgggacccg gactcgacct acgtgcgcaa
     6301 acccccgtat ttcgatggga tgacggctca accgccggcg gtgaccgaca tcaccggtgc
     6361 ccgcgtgctg gcaatgctcg gggactcggt gaccaccgac cacatttctc ctgccggtgc
     6421 gatcaaggtg gactcccccg ccggtcgcta cctcgccgag cggggcgtcg aacgtaagga
     6481 cttcaattcg tatggatctc gccggggcaa tcacgaggtc atgattcgcg gcacgttcgc
     6541 taacatccgg cttcgcaatc ttctactcga gaacatcagc ggtggctata cccgcgactt
     6601 cactgccagc ggcacggaat caatggatgc catctccatt tacgacgccg cgcagcgcta
     6661 tgccgaagcc ggcatcccgc tgctagtgtt aggcggcaaa gaatacggct cgggttcgtc
     6721 gcgggactgg gcggccaagg gcaccgggtt gctcggggtg cgtgcggtgc tcgccgagtc
     6781 gtttgagcgc atccaccgct ccaacctcat cgggatgggc gtgcttccgc tgcagttccc
     6841 ggatggcgag tcggcgtcgt cgctggggct ggacggcacc gagacattcg acatcaccgg
     6901 cgtcacagcg ctcaacaacg gctccagccc ggcgacggtg catgtcacag cgacccgcga
     6961 agggatcgat ccggtcgagt tcgacgccgt actgcgcatc gacacccccg gcgaggccga
     7021 gtactaccgc aacgggggca tcctgcaata cgtcttgcgc gccatggcgc gcaagggctc
     7081 atgagtgagc gcttgattca ggagccggta ctgagcgtgc tgagatggcc aaccggttcc
     7141 acgtgttgat gacggcggca gcccagatca gctgacttac ctccttctca tcgaacacgc
     7201 ggcgagcttc tttgtacacc gcgtccgaca cgtgcccgtc ggtgatcagc gtgatcgcct
     7261 cggtcagcgc gagtgcggct cgctcccgct cggtgtagaa cgcggtttcc cgccaggcgt
     7321 tcagtgcgta gaggcgctgc tcggtctcgc ccatcgcgcg ggcgtctttg ctatgcatgt
     7381 cgaggcagta ggcgcagcca ttgatctggg aagcgcgcat cttgatcagt ccgagcagct
     7441 gacgttccaa gccgcaatgc tccaccgcgg agttgagcgc ggccatccgc cgatacaggt
     7501 cagagttgag ctctgccaaa gagaagcggg gttccatgtt tcagacgtta gtgtccgcag
     7561 ctgatcggcg gcggccgacg tgccgccgtc ctacccaccg gatcgggccg ctctgatggc
     7621 gtcgtcgacg tcgaggagat gatgccggcc ctcatgcacg gtgtgccgac caagccacgc
     7681 taccgtgcgc tgcgctggag ccggataacc atggacgcaa cgccgttgcc attgggcgtc
     7741 gtcaagtctg gcgaaggccc gggctgccag gcttgcggct aggtcgactt cgcggctcac
     7801 ctcttcgagg ctgtcgtcgc tgtatcgggc aaggacgacc cgctcatcgc ggtagatgga
     7861 ccagaagcgg ggagtgtctt caaccagggc aaggtgaagg cgctcccgct gggcgagcag
     7921 gacgtcacgg aagtggcagc tgtactccag tgcggaccag acctgcggca tcggtcgccg
     7981 ccgtagcaag cgcgcatgct ccgcgtcatg aacaccggcc tcaagccgtg accggtaagc
     8041 ggttcccaac gagcggagct cctcggaaac ctcgttgatc tcgagttggt catagtggaa
     8101 gctgcacctc tcgcagtggt ccatgccgcc atcctggtgg cccgcatcat cgatccgccg
     8161 cccgtcgccg acctttggtg cgtactcatt tcgatgatcg ctacaccttt gacccccagg
     8221 atggcactga taactgttat cagtagtctc cgggctcccg gcccgaccag cattggagaa
     8281 cctctttgaa gatcgctctg gtaggcaagg gtggcagcgg caagaccacg ctggccgcgt
     8341 tgttcgtccg ccatcttgtg gccgccgacc gcccggtgtt agcggtggac gccgacatca
     8401 accaacactt ggccgttgca ctcggtgcca ctgaggccgg ctcggcggcg ctgccgacgc
     8461 tgtctgccca gctaccgctg atcaaggact acctgcgggg ggcgaacccg cggatcgcct
     8521 cggccgccgt aatggtgaag acgaccccgc caggcgcggg ttcccggctg ctgcgggtcg
     8581 tggagcgtaa tccaatctac gacgcgtgcg tccgggaggt cggtggggtg cggctgtcgg
     8641 tcaccggctc gtttgccgag gaagatctgg gggtggcttg ttaccactcc aaggtcgggg
     8701 ccgtggaact gctgctgaac catctcgtcg acgatgtcga cgagtacgtg gtggtggaca
     8761 tgaccgccgg cgcggattcc tttgcttccg ggttgttcac ccgcttcgac gtgatgtttc
     8821 tggtttgcga gccgaccctg cgcagcgtcg gggtgtaccg ccagtaccgc gcctatgccc
     8881 atgactttgg ggtgcggatc gccgtagtgg gcaataaagt ctccgatgag gacgatgcca
     8941 cattcctccg agagcagatc ggctctgacc tggtgggctg ggtgagtcgc tccgcgcacg
     9001 tccgcgcggc cgaacgcggt cagatcccgc cgatcagtac gctggagccg gccaacgccg
     9061 ccacgctcga cgtgatgcgg aagacggtgg acagcacgac caaggactgg cagacctacc
     9121 agagtcaggc cgtcgagttc catctgcgca acgccgccgc ctgggccaac gaccgaaccg
     9181 ggtgcgatct ggccgatcag gttgacccag acttcatcca tggtcccggc gcactcgccc
     9241 ggtcaggaca gctcccgtcc agcacgccgt gacctgacct ccggggacag tgcgggtgat
     9301 gtcatgaccg gagtaagact gtgtcggcgg cgagtgccca gcaacgcgag ggcgtagcca
     9361 ccggtggcta cggcgaggat cgcaaagctc ggcggaagcg caggcacggt atagctgagc
     9421 accaggccgc cccacatcgc ggcgaccgca agaccggcgg agatgaacag cgccgggtac
     9481 ggccgggcgg tgagacgttg ggcggtccca gcaggtgcgg cgagcagccc gagcagcagc
     9541 agggcaccga cggcctgggt cgcctcggcg gcggccgcac cgaccagggc gaggaagccg
     9601 tagccgagca ggcgcaccgg gacgcctcgc gcggccgcaa cggcgccgtc gacgctggcg
     9661 aacagcagcg gccgggcgat agcgaccatg accgccacaa tgacagcggc gacgatcgcg
     9721 gctgtgacag cctcggagag ggcgaggccg aagatcgagc cgaacaggac gttgacaccg
     9781 gcgttgccgt tgccggcgct gtgagtggtc gtgaacaggg tcaagaagaa cacgccgagg
     9841 cccagaatcc aggcgaacac gctgccgatc gcgacatcgt cggctcggcc ccggtcaccg
     9901 agagcgccaa gggcgagccc cacgccgatg gtcgcagcga acagtccgag ccgctcatcg
     9961 atgcccagcg ccagcgccgc gagggcaccg gtgaacgcca cgtggctcag ggcgtcgccg
    10021 gtgaaaacct ggacgcggag cacgacgaag tagccgacca ggcccgcagc tgcagcgatc
    10081 gcagtgccgg caaggagagc atgaagcagg aatggcggcc aggtcatggc gcgatccccg
    10141 cggccggtgt cgtgatggtg ccggtggccc ggcaccgaga ccgcgtgtgg cgaaccatct
    10201 ggctccccac ataccctgcg aaggcgaagc tggtgacgta gaacccaacc ggatatggga
    10261 tgtagtaggc cacactcagg cccaaccatg tgaccaccaa cccgatcagg atggtcaacg
    10321 ccagggcggt aaacggtcgc gcggtcagcg cctgcgccgt agctgcgggc atcaccagca
    10381 gggcgaacac taacaacgtg ccggtgatct ggctaacctc agcggtcgca ccaccgagga
    10441 gtaccagaaa tgttatggac agcgcccgca ccggcacgtt gcgggcggcc gccacatcgg
    10501 ggtcgatcga ggcgaatgcc agcgggcggc cgatcattcc cagaatgatc agggacacca
    10561 gggcgacgac gcccagaacg gcgacctgct ctcccgtgat gcccaagaag ctgccgaaca
    10621 gcagcgcgtt gatgctgttg aggaacccct tgtagagggt gacgaacaga aacccgcagg
    10681 ccagcgccaa tgcctgcaca gtgccagtga cagcagattc ctccgagtag ccgccccgcc
    10741 ccgtgcgcgg tagcgccgcg atgaccaggg caccggccag gcagaacgcg aaatagccat
    10801 aggtggccgc tacaccgatc agaaccgctc ccgcagcgcc ggggaaaccg atcagagaca
    10861 gggtatggcc agcgaaactc tgccgccgca acaccatgaa atgacccatg gccccggcca
    10921 gcacggcgac aatcgtgccc gcgcggaagg cgttgaccat gaacgggaac gaccacatct
    10981 gctgcagatc ggtgatcggg ttccagctcg ggcctgcggc gagaatcacg ggcccactcc
    11041 agtgtgccgg tcggcgtgca ttcccgactc gtcgggttgg ccaatcacga ccagccgccc
    11101 atcggaagcg gtgagtactt c
//
LOCUS       DASVXZ010000899         5100 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1146850, whole genome shotgun sequence.
ACCESSION   DASVXZ010000899 DASVXZ010000000
VERSION     DASVXZ010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5100
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146850"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /locus_tag="VF788_18910"
     CDS             complement(<1..939)
                     /locus_tag="VF788_18910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEX8936208.1"
                     /translation="MRAHPAGPRHADVLARSSTAGPCPTGTIELNALHPAVWPRGAHR
                     GEDGAVRLAGVEVGELAETYGTPLFVVDEADFRGRCADHATAFGAPQRVHYAAKAFLC
                     SEIARWVAEEGLSLDVCTGTELALALHAGFPAHRIAMHGNNKSSEELTAAIEAGVGTV
                     VLDSFLEIARLDDIARRHGAVQPVLIRATVGVEAHTHEFIATAHEDQKFGFSLAAGDA
                     AEAVRRVLKLQGLRLVGLHSHIGSQIFDADGFELAAHRMVDLLASIRDEHGPEALPDV
                     TTLDLGGGLGIAYTAEDDPPRPAILAGHLRVIVDVRC"
     gene            complement(936..1724)
                     /locus_tag="VF788_18915"
     CDS             complement(936..1724)
                     /locus_tag="VF788_18915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HEX8936209.1"
                     /translation="MTPAALADLVRSVAHDVLTGRGLDSAVLPSTVTVQRSRDPAHGD
                     YATNVALQAGKKAGVAPQELAMWLARELAQRPGVRSAEVAGPGFLNLRLSADAQGEIV
                     AHVLAAGERFGTSEDVFGSIDIGRKLWSTRTNDNPAYSVQYVHARLASLARNAVDLEI
                     SSDIAQLGLLDHESEGELIRTLGEFPRIVALAAQLREPDRVARYLEELVGAYHRFSDN
                     CRVLPMGEEQPGPVHAARLALCEATRQVLANGLGLLGVSAPERI"
     gene            1879..2688
                     /locus_tag="VF788_18920"
     CDS             1879..2688
                     /locus_tag="VF788_18920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3105 domain-containing protein"
                     /protein_id="HEX8936210.1"
                     /translation="MPSGKSSKTVRNARPVVTATKPKPWGTIAAVVAIAVFAVAVFGY
                     MFTRYEDRRAFTPTASTKDPSTQIPGIVIQDYGTGRGHIGPDKRVAYDHSPPFGGPHD
                     GTWAACNGVVYATPVRNENMVHALEHGAVWIAYNPDKITGAALQSLRDRVQGSNYLML
                     SPYPGLDMPISLQSWGHQLKMTDPADKRIDHFIQALRLNQYTYPEIGASCDVLSGLFD
                     PAKPPPFVAAPPGPDAVPLTFSGGRGASPGDETAPAAPGGTQPAPNPPPGG"
     gene            2787..3446
                     /locus_tag="VF788_18925"
     CDS             2787..3446
                     /locus_tag="VF788_18925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HEX8936211.1"
                     /translation="MVLASIAVLAVLLLGAALGMSLQLVGGAPAQPEGGTVDVGFAQD
                     MSVHHRQAVQMAGLARDRSTDPEIRSIAFDIETNQLQQIGQMQGWLSLWNAAALPTGR
                     YMTWMTDAESMPGMAGMGHNGGSSGVAGVTTMPGMASPADLEQLRAANGAQFDVLFLQ
                     LMLRHHQGGVPMARYAEQHGEIPQVRNLAEKIVTSQSAESDYMIQLITQRGAQPLPPP
                     R"
     gene            3511..3582
                     /locus_tag="VF788_18930"
     tRNA            3511..3582
                     /locus_tag="VF788_18930"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3544..3546,aa:Arg,seq:ccg)
     gene            3889..4239
                     /locus_tag="VF788_18935"
     CDS             3889..4239
                     /locus_tag="VF788_18935"
                     /inference="COORDINATES: protein motif:HMM:NF039700.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6247 family protein"
                     /protein_id="HEX8936212.1"
                     /translation="MTTRQPSPATMPASAASSDSGGSGIVAVCARGVEKTPAAIRDAL
                     DPAQRSRFEAEYRAALVHAAETLDLEPVLTLVQRTWWVRAVMCLNPEMLDGVAAEVER
                     VAASDKAARTGEDR"
     gene            4261..4509
                     /locus_tag="VF788_18940"
     CDS             4261..4509
                     /locus_tag="VF788_18940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936213.1"
                     /translation="MVRYLVRNVSYADEQLSQLPRSLRTAFDARVEDLKDDPYAVGDP
                     HEDTRSYSTTFGEGGIILYMISDKIATVTILRVNWVEL"
BASE COUNT          903 a         1705 c         1642 g          850 t
ORIGIN      
        1 gcaacggacg tccacgatga cccgcagatg cccggccagg atggctggtc gcggcggatc
       61 gtcctccgcg gtgtaggcga tccccaggcc accgcccaga tccagtgtgg tgacatcggg
      121 cagagcctcg ggcccgtgtt catcccggat cgaggccagc agatcgacca tccggtgggc
      181 cgcgagctcg aaaccgtccg cgtcgaagat ctgggagccg atatggctgt gcaggccgac
      241 caaccgtaac ccttgcagtt taagcactcg tcgaacagcc tctgctgcgt cccctgccgc
      301 gagtgaaaag ccgaatttct ggtcttcgtg cgcggtggcg atgaattcat gggtgtgcgc
      361 ctcgacgccg acggtcgccc gaatcagcac cggttgcact gcgccgtgcc gccgggcgat
      421 gtcgtccagc cgggcgatct ccaggaagga gtcgagcacc acagtgccga cgccggcctc
      481 gatagcggcc gtgagctcct cggaggactt gttgttgccg tgcatggcga tccggtgcgc
      541 ggggaatccg gcgtgcagcg cgagcgcgag ctcggtgccg gtacacacgt ccagactcag
      601 accctcctca gccacccagc gggcgatctc ggaacacagg aaggccttag ctgcgtagtg
      661 cacgcgctgc ggagcaccga aggcggtcgc atggtcggcg cagcggcccc ggaaatccgc
      721 ctcgtctacc acgaacaacg gtgtgccgta ggtttccgcg agctcgccca cctctacccc
      781 ggcgagccgc accgcaccat cctcaccccg gtgcgctccc ctcggccata ccgctgggtg
      841 cagggcgttc agctcaatag tcccggttgg gcaggggcct gcggtggagg accgggccag
      901 cacgtcagcg tggcgcggcc cagccggatg cgccctcata tccgctccgg tgcgctgact
      961 ccgagcaggc ccaggccgtt ggccagcact tgacgggttg cctcgcacaa cgccaagcgg
     1021 gcggcatgta ctgggcctgg ttgctcctcg cccatcggga gtacccggca gttgtcggag
     1081 aacctgtggt aggcgccgac cagctcttcc aggtagcggg cgacccggtc cggctcgcgc
     1141 agctgagcgg ccagagccac gatgcgcgga aactcaccca gcgtgcggat caactcaccc
     1201 tcgctctcgt gatctaacag cccgagttgg gcgatgtccg agctgatctc gagatcgacg
     1261 gcattgcgcg ccagtgaggc cagccgggca tgcacgtact gcacggagta cgcggggttg
     1321 tcattggtcc gcgtcgacca cagcttgcgg ccgatatcga tggatccaaa cacatcctca
     1381 ctggttccga agcgctcccc ggccgcaagc acgtgcgcga cgatctcgcc ttgcgcgtca
     1441 gcgcttagcc gcaggttgag gaagccaggg ccggcgacct ccgcggagcg cacccctggg
     1501 cgctgcgcca attcccgcgc cagccacatg gcaagttcct ggggcgccac tccggccttc
     1561 ttcccggcct gcaaggccac gttggtggcg taatctccgt gcgcgggatc acgcgaacgc
     1621 tgcaccgtga ccgtcgacgg aagcacagcg gagtccagac cacggccggt cagcacgtca
     1681 tgcgcaacgg atcgaaccag gtcggcgagc gcggcggggg tcacctctgc gagtctaggg
     1741 agatgccggg atcgtggacg gagggagttt ggctgcccgg gttcactcgc tcatgaccag
     1801 gagtccctac actaacgccg cgatcgggca gcagtcccgg gtagacgaga caccgtttga
     1861 gcgaggacca caccaggcat gccgagcggc aagagcagca agacggtgcg caacgcccgt
     1921 ccggtggtga cggcgaccaa accaaagccg tggggaacga tagccgcagt tgtcgccatt
     1981 gcggtattcg cggtcgccgt cttcggctac atgttcaccc gctacgagga ccgccgagcc
     2041 ttcacgccca ccgcgagcac caaggatccc tcgacccaga tcccgggcat cgtgatccag
     2101 gattacggta ccggccgcgg ccacatcggt ccggacaagc gagtcgccta cgaccacagc
     2161 cctccgttcg gcggtccgca cgacggaacc tgggcggcct gcaacggagt ggtctacgcg
     2221 acccccgtgc gcaacgagaa catggtccac gcgctggaac atggcgccgt atggatcgcc
     2281 tacaacccgg acaagatcac cggcgcggcg ctgcaatccc tgcgcgatcg cgtgcaaggc
     2341 tcgaactacc tgatgctttc cccctacccc ggtctggaca tgccgatctc cctgcagtcc
     2401 tggggacacc aactcaaaat gaccgaccca gccgataagc ggatcgacca tttcatccag
     2461 gctctgcggc tgaaccagta cacctatccc gagatcggag ccagctgcga cgtgctctcc
     2521 ggtctgttcg acccggccaa accaccaccg tttgtcgccg cgccgcccgg tccggacgcc
     2581 gtaccgctga cgttctccgg tggccgcggc gcgtcgccgg gtgacgagac cgccccggcc
     2641 gctcccggcg gcacgcagcc ggcacccaac cccccaccgg gtggatgaat cacgacatga
     2701 cggaggcgat cacctcgagt gaatcgagcc cggggagcgc tcaggcgcca acctccgcca
     2761 ccaagactcc cgggcgctgg ctccgcgtgg ttctggccag cattgcggtg ctcgccgtgc
     2821 tcctactcgg agcggcgctc ggtatgtcct tgcaacttgt gggcggggcg ccagcccagc
     2881 ccgagggcgg cacagtggac gtcggcttcg cgcaggacat gtcggtacac caccgccaag
     2941 cagtgcagat ggcgggcctg gcgcgagacc gcagcacgga tcccgaaatc cggtcaatcg
     3001 ccttcgacat cgagaccaac cagctgcagc agatcggaca gatgcagggc tggctcagcc
     3061 tgtggaacgc tgcggcgctg cctaccggcc ggtacatgac ttggatgacc gacgccgagt
     3121 cgatgcccgg gatggcggga atggggcaca acggcggatc ctcgggcgtc gccggggtga
     3181 caacgatgcc ggggatggcc tccccagctg atctggagca gctccgagcg gccaacggcg
     3241 ctcagttcga cgtgctattc ctgcaactta tgctgcgaca ccatcagggc ggggtaccca
     3301 tggcccgata cgccgagcag cacggtgaga ttccccaggt gcgcaacctg gccgaaaaga
     3361 ttgttacctc tcagagcgcc gagagtgact acatgatcca gttgatcacc cagcgaggtg
     3421 cgcaaccgct accaccgccg cggtgaccga caccgcgtta ggctgggccg atcggtagag
     3481 gtaggctctg ccgcggcata gtggtggcag gcccccgtag ctcaggggat agagcaccgc
     3541 cctccggagg cgggagcgca ggttcgaatc ctgccggggg cgccgtcttc agccagcaca
     3601 aacaccctca gaccagggct gatggattga ggggacgtcc tcgtgtgtct ggctccgtcc
     3661 agcgatatcc ggtggtgaac ggtggttcat gtccaatacg cgtccaagtt cgtcctaccg
     3721 gcagcgatag tcgagcgtct cctgcagccg ccgtcggagc accggctcct tgccgcgcaa
     3781 ggcaacgttt caccacttac cgcgtcttaa gctgggggcc cttgactccg gcccagcctg
     3841 cgccacttac cggcgtttgc cgattcgtag ccggccgaag gaggcaacat gaccactcgt
     3901 caaccctcac ctgcgacgat gccagcctcg gccgcatcca gcgattccgg cgggagtggg
     3961 atcgtggccg tgtgcgcgcg aggggtggag aaaaccccag cggcgattag ggatgccttg
     4021 gacccagctc agcggtcgcg gttcgaagcg gagtatcgcg ccgccctcgt acatgccgcg
     4081 gagactctag acctggagcc agtgctcacg ctggtgcagc gcacctggtg ggtgcgagcg
     4141 gtgatgtgtc ttaatccaga gatgctcgat ggggtggccg ccgaggtgga acgcgtcgcc
     4201 gcaagtgaca aggcagcgcg gacgggcgag gaccgttgac atgccgggcg ggaaggttcg
     4261 atggttcggt atctggttcg caacgtctct tacgctgatg agcaactaag ccagctgccc
     4321 cgctccttgc gcaccgcctt tgacgccaga gtcgaagacc tgaaagacga cccctacgcc
     4381 gtcggtgacc cgcacgagga cacgcgtagc tactccacca cattcggcga ggggggcatc
     4441 atcctctaca tgatttccga caaaatcgcc acagtgacca tcctccgcgt caactgggtc
     4501 gagttataac gctgccctat aggcgttggg cgccagcgcg ggcggtctac acgtcggatc
     4561 tcggtgccgc atggccagtt gaggtggtcg tcgagcctct cgtgcctacc gagtttgatg
     4621 gccgagcgct gtctccacgc gctgccgaag tacctccgct ccgccatcga ggccggatac
     4681 acaccccatg ttgatcagcg accgccgcga ccacatcggg ccgccaacgg ttggcgcatc
     4741 cgctccaccc gggtggaccc acccggtgag ccactcgtga tctgggtaga agtgctcatg
     4801 cagcaccgcc actggatccg ctgggatcga tgggtgtggc gaggttgctg tgcttttgtc
     4861 cagtgcggtt gtaattcaga tcggggaggg ggcttgcgcc ccgcttggtg gatctgcgta
     4921 tcctcactac tgttcactcc tgactcgggt ggacagcgca gaagcggaca ggttggtagc
     4981 cgaaagattc cgcttctgcg cgtacgtcgg ttccgcgctt gatgagggcg agcggcatca
     5041 ccgcaccacc ccggcgcgtt aaatttcgtt ctgtatttcc ctgtcgtatg tgttattgca
//
LOCUS       DASVXZ010000900         5544 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1051580, whole genome shotgun sequence.
ACCESSION   DASVXZ010000900 DASVXZ010000000
VERSION     DASVXZ010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5544
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1051580"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..546)
                     /locus_tag="VF788_18945"
     CDS             complement(<1..546)
                     /locus_tag="VF788_18945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEX8936214.1"
                     /translation="MKIGVPRELKIHEYRVAITPAGVLELTRRGHELLVERDAGAGSA
                     FPDAAYLAAGARIVPQADDVWADAEMVLKVKEPVPPEYHRMRKGQILFTYLHLAASAE
                     CTVAVIDAGIDAIGYETVQLPDGSLPLLAPMSEVAGRMAPQVGAHCLERMQGGRGVLL
                     GGVSGVPAGKVVVLGAGVVGMN"
     gene            complement(710..1330)
                     /locus_tag="VF788_18950"
     CDS             complement(710..1330)
                     /locus_tag="VF788_18950"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007025076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX8936215.1"
                     /translation="MSPPHEFAVSGSDTLHVGRVLALRLDQVMMPGGRAARREVVEHP
                     GSVVVVPLHDDASVTMIDQYRHPLGRRIRELPAGLLDVPGEDPVTTARRELLEEVGYT
                     AGEWSVLVDLVASPGFSDEAQRVFLARGLTEVGRLSGADEEADLKVIRLPLAEAVRQV
                     LTGEIVNAPAVAGLLAAQAVLAGTAQPRPVEALWPDRPTRFADRRC"
     gene            complement(1327..3015)
                     /locus_tag="VF788_18955"
     CDS             complement(1327..3015)
                     /locus_tag="VF788_18955"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEX8936216.1"
                     /translation="MKHVRPTRYLFVTGGVASSLGKGLTASSLGQLLTARRLRVTMQK
                     LDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDRALGRNANVTTGQVYSA
                     VIAKERRGEYLGDTVQVIPHITDEIKSRILAMSEPAQDGRPPDVVITEIGGTVGDIES
                     LPFLEAARQLRHDVGRDNCFFLHVSLVPYLAPSGELKTKPTQHSVATLRNIGIQPDAL
                     VCRADREVPEGLKRKIALMSDVDIDGVVAAPDAPSIYDIPKVLHSEGLDAYVVRRLGL
                     PFRDVDWTEWGDLLDRVHNPTGLVRIALVGKYVDLPDAYLSVTEALRAGGFAHRARVE
                     IRWVPSDTCETPAGAQTALAGVDGVLVPGGFGIRGIEGKIGAIHHARIRGIPVLGLCL
                     GLQCMVIEAARNLAGLDGADSTEFDAATAHAVISTMADQTDVVAGQRDMGGTMRLGSY
                     PAVLEPDSIAARAYGATEVSERHRHRYEVNNAYRDKLAASGLVVSGLSPDGHLVEFVE
                     LPVRTHPFFVGTQAHPELASRPTRPHPLFVAFVAAALNYRAADWLPVEMPARSR"
     gene            complement(3149..4087)
                     /locus_tag="VF788_18960"
     CDS             complement(3149..4087)
                     /locus_tag="VF788_18960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper transporter"
                     /protein_id="HEX8936217.1"
                     /translation="MISLRYHIISIAAVFLALALGVVLGSTAISDRLLSGLSSNRAEL
                     SRQVSDLQAERNELRARLTDADVFGAAVGPRVVSGALRGRTVVLVTTADANPADRDTL
                     TGLIGSAGGTVTGELQLTEAFTDPSRSDQLSELCTRLLPAGLRLPTASDAGTLSGGLL
                     GSLLLINPQNGKAQATTAETTAVLAGLGDGGFVRLGPQVQPAQLVLVLTGGASRVNSS
                     GDRAGILARFATQLDRSGSGAVLAGRPGSADGNSPIGVVRADTAAASVLSTVDDVSTA
                     AGRVVTVLALAEQAQGRAGRYGVGSNAQAVIPAVQG"
     gene            complement(4091..5269)
                     /gene="steA"
                     /locus_tag="VF788_18965"
     CDS             complement(4091..5269)
                     /gene="steA"
                     /locus_tag="VF788_18965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cytokinetic ring protein SteA"
                     /protein_id="HEX8936218.1"
                     /translation="MKISGLLSRSGRELPGVTGLARVDRRADALARRVGVGDIAVFDQ
                     VDLDRRTADALVAAGVSAVVNAAPSISGRFPNLGPEILVSAGIVLVDGVGADALRIKD
                     GSRLRLHEGGVYVGETEVARGIEQDANSIADLMIEAKSGLSAQLEAFSANTIEFLRHE
                     RALIIDRVGVPEINVPIRGRQVLVVAAGYNYTEDLAALKHFIREYHPVLIGVEAGADA
                     LRAAGHRPHLIVGDPYQIETGTLKSADEVVVPAQPDGFAPGLERIQDLGIGAVTFPAV
                     SNPEDLALLLAEAHGAELVIAVGFQATLHEFLDRGRSGSNPSTFLTRLRLGSKLIDGH
                     AAATMYRSRVSVGAVLLMVLAALVAVTAALLVSSVGGAFGALVSDSWNNAVSWVEGLG
                     "
     gene            complement(5357..>5544)
                     /locus_tag="VF788_18970"
     CDS             complement(5357..>5544)
                     /locus_tag="VF788_18970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018332207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEX8936219.1"
                     /translation="VDKATRATGLTRSGVRELDEVARVGELARMLAGLDNTDTGRAHA
                     EELLLSAMADKRRHVSA"
BASE COUNT          974 a         1966 c         1759 g          845 t
ORIGIN      
        1 attcatcccc accacccctg caccgagcac cacgaccttg ccagcgggca ccccggagac
       61 cccgccgagc agtacgccgc gcccgccttg catacgttcc aggcagtgtg cgccgacctg
      121 gggggccatc cgcccggcaa cctcgctcat cggcgccagc aggggcagtg aaccatcggg
      181 tagctgcacc gtctcgtagc cgatcgcgtc gatccctgcg tcgatcacag caaccgtgca
      241 ctcggccgac gcggccagat gcaggtaggt gaacagaatc tggcccttgc gcatccggtg
      301 gtactccggc ggcaccggct ccttcacctt gagcaccatc tcggcgtcgg cccacacgtc
      361 gtcggcctgc ggcacgatgc gggcacctgc ggccaggtag gccgcgtcgg gaaatgcgga
      421 gccggcaccg gcatcgcgtt ccacgagcag ctcatgcccg cggcgggtca gctcgagcac
      481 tccggcgggc gtgatcgcga cccggtactc gtggatcttc aactcgcgtg gaacaccgat
      541 cttcaccgcg gtgtgccttt ctgctcagct ctactcggtg gtcgaaggct acggccgttg
      601 acgctgcgca gatgaacacg aacatcgagc cgcgccgacc ggctgaaggc tccgatcgct
      661 tccacgcgcg ccgcaacgcg caggacggtc ctgcggtcca ccgagcccct cagcagcgac
      721 gatcagcgaa gcgggtcggg cggtcgggcc acaaggcctc gaccggtcgt ggttgcgcag
      781 tgccggccaa tacggcctgg gcggcgagca gcccagcgac cgcaggtgca ttgacgatct
      841 cgccggtgag cacctgccgc accgcctcgg ccaggggtag ccggatcacc ttgaggtcgg
      901 cctcctcgtc agcaccggaa agccggccga cctcggtcag cccgcgagcc agaaacaccc
      961 gctgcgcctc gtcgctgaac ccaggcgagg ccaccaagtc gacgagtacc gaccattctc
     1021 ccgcggtgta gccgacttcc tccagcagct cgcgccgggc ggtcgtcacc gggtcctccc
     1081 ccggcacgtc cagcagaccg gccggcaact cgcggatccg gcggcccagc gggtgccggt
     1141 actggtcgat catcgtcacc gaggcgtcat cgtgcagcgg cacgaccacc accgacccgg
     1201 gatgctcgac gacctcgcgc cgtgccgcac gcccaccggg catcatcacc tgatccagcc
     1261 gcaatgcgag aacccgtccg acgtgcaacg tgtcactacc ggataccgcg aactcgtgcg
     1321 gcgggctcac cgcgacctcg ctggcatctc taccggcaac cagtccgcag cacggtagtt
     1381 caacgccgcc gcgacgaagg cgacgaatag tgggtgcggg cgggtgggcc ggctggcgag
     1441 ctctggatgg gcctgggtgc cgacgaaaaa cgggtgcgtg cgcacaggaa gctcgacgaa
     1501 ctcaacgaga tgaccatccg gcgacagccc gctgactacc agccccgacg cggcgagctt
     1561 gtcccggtag gcgttgttca cctcgtagcg gtgccggtgc cgctcggaaa cctcggtagc
     1621 gccgtaggcc cgggccgcta tcgagtccgg ctcaagcacc gccggatagc tccccagccg
     1681 catcgtccca cccatgtcgc gctgaccggc cacgacgtca gtctgatcgg ccatggtgga
     1741 gatcaccgcg tgggccgtcg ccgcatcgaa ctcagtcgaa tcggcaccgt cgaggccggc
     1801 caggttgcgg gcagcctcga tcaccatgca ctgcaggccc aggcacaggc ccagaaccgg
     1861 gatccctcgg atgcgggcat ggtggatggc cccgatcttg ccctcgatgc cacggatgcc
     1921 gaacccgccg ggtaccaaca ccccatccac acccgccaac gccgtctgcg caccggcggg
     1981 ggtctcacag gtgtccgagg gcacccagcg aatctcgact ctggctcggt gcgcaaaacc
     2041 tccggcgcgc agtgcctcgg tcaccgacaa atacgcgtcc ggcaggtcga cgtacttgcc
     2101 caccagggcg atccgtacca gcccggtcgg gttgtgcacc cggtccagca agtctcccca
     2161 ctcggtccag tccacgtccc ggaacggcag ccccagcctg cgcaccacgt aggcatcgag
     2221 gccttcggag tgcagaacct tgggaatgtc atagatagaa ggcgcatccg gcgcggccac
     2281 aaccccgtcg atgtccacgt cggacatcag cgcgatcttg cgcttcagcc cttccgggac
     2341 ctcccggtcc gcgcggcaga ccagggcatc cggctggata ccgatgttgc gcaaggtggc
     2401 cacggagtgc tgggtcggct tggtcttcag ctcgccggag ggagcaaggt agggcaccag
     2461 cgagacatgc aggaaaaaac agttgtcccg gccgacgtcg tggcgtagct ggcgggccgc
     2521 ctccaggaac ggtaacgact cgatgtcccc gaccgtccca ccaatctcgg tgatcaccac
     2581 gtccggcggg cgaccgtcct gcgctggttc cgacatggcc aggatccgtg acttgatctc
     2641 atcggtgatg tgcgggatca cctgcacggt gtcgccgagg tattcccccc gccgttcctt
     2701 ggcgatcacc gcagaataga cctggccggt ggtgacgttg gcattgcgac cgagcgcgcg
     2761 gtccaggaac cgctcgtaat gcccgatgtc caggtcggtc tcggcgccgt cctcggtgac
     2821 gaacacctca ccgtgttgga aagggttcat cgtgcccggg tcgacgttga ggtaagggtc
     2881 gagcttctgc atcgtcaccc gcagccggcg agcagtcagt agctgaccca agctagacgc
     2941 ggtgagcccc ttgcccagcg aagaggcgac gcctccggtg acgaacaggt acctggtggg
     3001 gcggacgtgc ttcaccaaga cacctctccc gtggtccgga ccggcccttc gattggcgac
     3061 cggttgggat gcggctggcg gcatgccacc gaccacggaa gttcacggta acaccaccgg
     3121 cggtggtctc gagccaccgc ctcgccggtc agccctggac cgcgggaatc acagcctgcg
     3181 cgttgctgcc aacgccgtat cgcccggccc gaccttgtgc ctgctcagcc agagccagca
     3241 ccgtcacgac ccggccggca gcggtgctca cgtcgtcgac ggtggacaac accgaggccg
     3301 cagcggtgtc cgcccgcacc acgccgatcg ggctgttgcc atcggcggac cctggcctgc
     3361 ccgcgagcac ggcaccagaa ccggaacggt ccagctgggt ggcgaatcga gccaggattc
     3421 cggctcggtc cccgctgctg ttgacccggc tggcgccccc agtcagcacc agcacgagct
     3481 gggccggctg cacctgcggg ccgagccgga cgaagccgcc atcacccaag ccggcgagca
     3541 cggcggtggt ctccgcggtg gtggcctgcg ctttgccgtt ttgcgggttg atcagcagca
     3601 gtgagccgag caacccgccg gacaaggtcc cggcgtcgga ggcggtgggt agccgcaacc
     3661 cagccggcag cagccgggtg cacagctcac tgagttggtc agaccgggac gggtcggtga
     3721 acgcctcggt gagttgcagt tcacccgtga cagtgccacc ggcgctgccg atcaacccgg
     3781 tcagcgtgtc ccggtcggcc gggttggcgt ccgccgtggt gacaagtacc acggtgcgac
     3841 cgcgcagtgc accactcacc acacggggcc cgaccgccgc gccgaagacg tccgcatcgg
     3901 tcaagcgggc gcgcagctcg ttgcgttcgg cttgcaggtc gctcacctga cggctcagct
     3961 ccgcgcggtt ggagctgagc ccggacagca gtcgatcgct gatcgcggta gatcccagca
     4021 ccaccccgag agcaagcgcc aggaaaaccg ctgcgatgga gatgatgtgg taccgcagtg
     4081 agatcacggt ctatcccaat ccttcgaccc aggagactgc gttgttccag ctatcactga
     4141 ccaaggcacc aaaggcacca cccacactgg agaccagcaa cgccgcggtg accgcgacca
     4201 gcgcggcgag gaccatgagc agcacggcgc ctaccgacac ccggctgcga tacatcgtgg
     4261 ccgcggcatg accgtcaatg agcttgctac ccaacctaag ccgggtcagg aacgtcgacg
     4321 ggttggaacc cgaccgcccc cggtcgagga attcgtgcag ggtggcctga aagccgacgg
     4381 cgatcacaag ttcggcgccg tgcgcctcag caagcagcag ggcaagatcc tccggattgc
     4441 tcaccgccgg aaaggtcacc gcgccgatcc ccagatcttg aatccgctcc agccccgggg
     4501 cgaagccatc gggttgggcc ggcaccacaa cctcgtcggc tgacttcaac gtgccggtct
     4561 caatctggta agggtcaccg acgatgaggt gtggtctatg tccggcggcg cgtagcgcgt
     4621 cggcaccagc ctcgacgccg atcagcaccg ggtggtactc ccggatgaag tgcttgagtg
     4681 cggccaagtc ttcggtgtag ttgtaaccgg cggccaccac gagcacctgc cgaccgcgaa
     4741 taggaacgtt gatctcgggt acaccgaccc ggtcgatgat taaggctcgt tcatgccgaa
     4801 ggaactcgat ggtgttcgct gagaacgcct caagctgagc ggacaatcca gacttagcct
     4861 cgatcatcag atcggcgatc gagttggcat cctgctcgat accgcgggcc acctcggttt
     4921 ccccgacgta caccccgccc tcgtgaagcc gcagccgact gccatcttta atccgcagcg
     4981 cgtctgcacc gactccatcg accagcacga tgcccgcgga gaccagaatc tcgggaccca
     5041 gattcgggaa cctaccggag atcgacggtg ccgcgttgac caccgcggat acccctgctg
     5101 ccaccagcgc atcggcggtc ctgcgatcca gatcgacctg gtcgaacacc gcgatgtcgc
     5161 cgacgccgac gcgccgcgcc agcgcgtcgg cgcggcggtc caccctggcc aaccccgtca
     5221 ccccgggcag ctctctgccg gagcggctga gcagaccgga gattttcatg ccggtgatgg
     5281 tggcaaattg gccatcactc gtcgcgtagg cgcgccgaga gatagctcgt gagtggcatg
     5341 cggcgctata acaccattac gcactcacat gccggcgctt gtcggccatc gccgacaaaa
     5401 gcagctcttc cgcgtgcgcg cgcccggtgt cggtgttgtc gagcccagcc agcattctgg
     5461 ccaactcgcc gactcgggcc acctcatcga gctctctgac cccgctgcgg gtcaacccgg
     5521 tcgcgcgggt tgccttgtcc acca
//
LOCUS       DASVXZ010000901         3746 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1315223, whole genome shotgun sequence.
ACCESSION   DASVXZ010000901 DASVXZ010000000
VERSION     DASVXZ010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1315223"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..631)
                     /locus_tag="VF788_18975"
     CDS             complement(<1..631)
                     /locus_tag="VF788_18975"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8936220.1"
                     /translation="MNLREAVFIALRGLRVHRLRSMLTMLGIIIGVAAVILLVAIGQG
                     MQNSVDARIQPLADLITIVPQTGNVPGGSPPKNLIDADVSALQKAPDVLTATPVTSAP
                     ALVETNTIKFRSTIIGSSERWNDVNSRDLQAGSFFDAAQSRTTAKVAVLGPVVATALF
                     DDPAAAMGQTVRINRQGFRVIGVMQSYGQQADKSVILPLDTARRYVFGGG"
     gene            complement(722..2767)
                     /locus_tag="VF788_18980"
     CDS             complement(722..2767)
                     /locus_tag="VF788_18980"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HEX8936221.1"
                     /translation="MTRSPRLGLGMLAMALVWAVTACTSTPSPPPPPPASGLLLAGYD
                     RQVRVQNDLFSFTNGQWVHTTEIPPDRSRYGAFDTLADKSEQDLHTIVEESAAHPGAV
                     GSPDQRIGDFYTSYMDTNRLEALGITPLKPSLARIDALATPADVLRYFAENAQTGTPS
                     PIALSIDQDAKNTNSYIPGVFQAGLTMPNRDYYLKTDPQFVKLRDQFRTYASRALGLT
                     GTTDPAGAADRVLAVETRLAQMHWTAAQDRDATATYNKFSLADATARTPGLDWKAYLD
                     AARVHTPEFIIAEPSFFTGLGSALTTMPLADWKSYLKFRLIDDLAPYLNNDLVTARFE
                     FRGRDLAGQQEMRPRWKRGVASVDSAMGDLLGERYVQRYFPPAAKARIDTLVGKLIDV
                     YRTSIDGLDWMSDATKAQAKDKLSKLAVKIGYPTKWKDYSKLTVARDDLVGNVVRSAQ
                     VEYQRDLDRLGKPVDRAEWLTTPQTVNAYYSATRNDVTFPAAILQPPFFDPKADDAVN
                     YGGIGAVIGHEISHAFDDQGRKFDGTGNLRDWWTPQDVQRFNTRTEALVAQYSAYEPL
                     PGEHINGELTLGENIADLSGLTVAMRAYHLSLGGRATAVMDGFTGDQRFFLGWSQVWR
                     GKARDEDLRARLLSDPHSPNEFRTNGVVSNLPEYYAAFGVKPGDKLFRPPDQRVKIW"
     gene            complement(2841..3338)
                     /locus_tag="VF788_18985"
     CDS             complement(2841..3338)
                     /locus_tag="VF788_18985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007029541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX8936222.1"
                     /translation="MSISSRPLDDVDRRMLSILVDDGRMSVNEVANRAGVSRATAYTR
                     YDRLVTEGVIRGFRAEIDPQAIGLDVAAMILINVEQGSWPTTRDKVSRLPGVEYVAMT
                     SGEFDFVLLVRMPDIAALRDVILYQLQGMPEVRSTHTIFVLDEKRHPIGSAHHLEPVI
                     PKGRR"
     gene            3425..>3746
                     /locus_tag="VF788_18990"
     CDS             3425..>3746
                     /locus_tag="VF788_18990"
                     /inference="COORDINATES: protein motif:HMM:NF012571.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HEX8936223.1"
                     /translation="MAAPIAPARFELPEDHPGSSDPAYRARRARIAEVGAAYHRGDPI
                     PDVTYTAEENEVWRVVSTELAVKHRRYACAEYLAGAERLRLPAARVPQLREVDKRVHH
                     LTGFH"
BASE COUNT          652 a         1130 c         1276 g          688 t
ORIGIN      
        1 cgccgccccc gaacacgtat cggcgtgcgg tgtccagtgg caagatcacg ctcttgtcgg
       61 cctgctgacc gtaggactgc atcacaccga tgacccggaa accctgacgg ttgatccgga
      121 ctgtctggcc catcgccgcc gctgggtcat cgaagagggc ggtcgccacc acgggcccca
      181 agaccgcgac cttggccgtg gtgcgggact gggccgcgtc gaagaatgat ccggcctgga
      241 ggtcccggct gttgacgtcg ttccagcgtt cactggagcc gatgatcgtg gagcggaatt
      301 taatggtgtt ggtttcgact agtgctgggg cgctagtgac tggagtggcg gtgaggacgt
      361 caggcgcctt ctgtagcgcg gacacatcgg cgtcgatgag attcttcgga ggagagccac
      421 cggggacatt gccggtctgc ggcacgatgg tgatgaggtc ggccagcggc tggatccgcg
      481 catcgacgga gttttgcata ccttggccaa tggcgaccag caagatcaca gcggcaacgc
      541 cgatgatgat accgagcatg gtcagcatcg agcgcaaacg atgtacccgc aacccgcgca
      601 gcgcgatgaa taccgcctcc cgcaggttca cctcacgcct gaactgccgt taaggccacc
      661 tagagcacat aaccggtatc tggtgttcgc cgcaagcggg caggtgaggg gctgtcgaac
      721 gtcaccagat ttttacgcgc tggtcaggtg gccggaagag cttgtcaccg ggcttgacgc
      781 cgaaagccgc gtagtactcg ggcaggttgc tgacgacgcc attggtgcgg aactcattgg
      841 ggctgtgtgg atcgctcaac agtcgcgctc gcagatcctc gtcccttgcc ttgccccgcc
      901 acacctgcga ccaccccagg aagaagcgtt ggtcgccggt gaatccgtcc atcaccgcag
      961 ttgctcggcc gccgagcgag agatggtagg cgcgcatggc taccgtgaga ccagacaggt
     1021 cggcgatatt ctcgcccagg gtcagttccc cgttgatgtg ctcgccgggc agcggctcgt
     1081 aggctgagta ctgcgcgacc agagcttcgg tccgggtgtt gaaccgctgc acatcctgcg
     1141 gggtccacca gtcccggaga ttgccggtcc cgtcgaattt gcggccctgg tcgtcgaacg
     1201 catggctgat ctcgtgaccg atcactgcgc cgataccgcc gtagttcacc gcgtcgtcgg
     1261 ctttcgggtc gaagaacggc ggctgcagga ttgcggctgg gaaggtgacg tcgttgcggg
     1321 tagcactgta gtaggcgttg acagtctgcg gcgtggtcag ccactccgca cggtccaccg
     1381 gtttgccgag ccgatcgaga tcgcgctggt attcgacctg cgctgagcgc accacattgc
     1441 ccaccagatc gtcccgggcg acggtcagct tggagtagtc cttccacttg gtggggtagc
     1501 cgatcttgac ggccagcttg ctgagcttgt ccttggcctg ggctttggtt gcgtcgctca
     1561 tccagtccaa gccgtcgatg gacgtgcggt agacgtcgat cagtttgccg accagggtgt
     1621 cgatccgggc tttggcagcc ggcgggaagt agcgctgcac ataccgctca ccgagcaggt
     1681 cacccattgc gctgtcgaca ctggcgacac cccgtttcca gcgcggacgc atctcctgct
     1741 gcccggccag atcgcggccc cggaactcga aacgcgcggt gaccaggtcg ttgttcaggt
     1801 agggggcgag atcgtcgatg agccggaact tcaaatacga cttccagtcc gccaggggca
     1861 tggtggtcag cgcggagccc aggccggtga agaaactggg ctcggcgatg atgaactcgg
     1921 gggtgtgcac ccgcgcagcg tcgaggtagg ccttccagtc cagcccaggc gtgcgcgccg
     1981 tggcatcggc gaggctgaac ttgttgtagg tcgcggtcgc gtcgcggtcc tgcgcggcgg
     2041 tccagtgcat ttgggcgagg cgcgtttcca cggcgagtac ccggtcggct gcaccagccg
     2101 gatcggtggt gccggtcagc ccaagggccc gtgacgcgta ggtccggaac tgatcgcgga
     2161 gtttcacgaa ttggggatcg gtcttcaagt agtagtcccg gttgggcatg gtgaggccag
     2221 cctggaagac acccggtatg taggagttgg tgttcttggc gtcctggtcg atggacagcg
     2281 cgatggggct gggggtgccg gtttgggcgt tctcggcgaa gtaccgcagg acatccgcgg
     2341 gggtggcgag ggcgtcgatg cgtgccagcg acggtttcag cggagtgatc ccgagtgcct
     2401 cgagccggtt agtgtccatg tagctggtgt agaaatcgcc gattcgttgg tcgggagagc
     2461 cgaccgcacc gggatgtgcc gcactctcct cgacgatggt gtgaagatct tgttcggatt
     2521 tatcggcgag ggtgtcgaag gcgccatacc gggaacgatc gggggggatc tcggtggtgt
     2581 gcacccactg accgttggtg aagctgaaca gatcgttctg tacgcgtacc tggcggtcgt
     2641 atccggccag cagcaatccc gaagccggcg ggggtggcgg cggcgacggt gtactcgtac
     2701 aggccgtcac ggcccacacc aatgccatcg ccagcatgcc gaggcccagc cgaggagatc
     2761 gagtcacggc gcctgacgat agaccagggg actgacgacg agcggcaggg tgtacgcgac
     2821 cggtcgcggc agctggggaa ttaacgacgc cccttgggga tgaccggctc gaggtggtga
     2881 gcggaaccga tgggatggcg tttctcatcg aggacgaaga tcgtgtgagt cgagcgcacc
     2941 tcgggcatgc cctgcagctg gtagaggatg acgtcgcgga gcgcggcgat gtcaggcatg
     3001 cggaccaaca gcacgaagtc gaactcgccg ctggtcatcg cgacgtattc gacgcccggc
     3061 aaccggctga ccttgtcccg cgttgtgggc cacgacccct gctcgacgtt gattaagatc
     3121 atggcggcaa cgtcaagccc gatggcctgc ggatcgatct ccgcgcggaa accacggatg
     3181 acgccctcgg tcaccagccg gtcgtaacgg gtataggcag tcgcacgcga cacaccagct
     3241 cggttcgcca cctcgttcac cgacatgcgg ccgtcgtcca ccaggatgct cagcatgcga
     3301 cgatcgacgt cgtcgagcgg acgagatgag atggacatcg cctaagaacg atagcagccg
     3361 aacgttcgtc tggttttgcg gctcagctgt tgaacgatcg tgctggcgag cacaggctcg
     3421 tcccatggcc gcaccaatcg cgcccgcccg gtttgagctg cccgaggacc accccggctc
     3481 cagcgatccg gcttaccgtg cgcggcgagc caggattgct gaggttggcg ccgcctacca
     3541 ccgtggcgat ccgatcccgg acgtcaccta caccgccgag gagaatgagg tctggcgcgt
     3601 cgtgtccact gagctcgcgg tcaagcaccg gcgctatgcc tgtgccgagt acctcgccgg
     3661 cgcagaacgg ctccggctcc ccgcagcgcg cgttccgcag ctcagagagg tcgacaaacg
     3721 ggtgcaccac ctcaccggtt tccaca
//
LOCUS       DASVXZ010000902         2042 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_974663, whole genome shotgun sequence.
ACCESSION   DASVXZ010000902 DASVXZ010000000
VERSION     DASVXZ010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_974663"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..168)
                     /locus_tag="VF788_18995"
     CDS             complement(<1..168)
                     /locus_tag="VF788_18995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011873539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEX8936224.1"
                     /translation="MAGIVGRLYSGTGAFDVVGRRRIWYSLSGLLVVICLASILLRGF
                     NLGIDFEGGTRV"
     gene            complement(170..1903)
                     /gene="secD"
                     /locus_tag="VF788_19000"
     CDS             complement(170..1903)
                     /gene="secD"
                     /locus_tag="VF788_19000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003077310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEX8936225.1"
                     /translation="MAPPAGHFRPWRNLAIFAGIVVVLYSLVFLTGGGQPTPKLGIDL
                     KGGTRVTLTARTLDGRPPPKESLDQARQIIEQRVNGIGVTGAEVVLDGTNLIITVPGE
                     NGDQARTLGQTAKLYFRPVNSEVAAGTPPPAPGGTPPGSGTPGTPSGSPQPPPSGGAP
                     APVPPQLLEPPPSGEPTPPPPAPPSSTPATPSRTPAPVGSVPADSADPQVAEQIRQAR
                     AQRQSQDPAVQQQALAALNCAAPDPLRGNDDPNLPLVTCDQHDTGKYVLGPAFLSGEQ
                     IANASAGFNPDGTGYEVLLRFKRQGEDIWAQYTSNNIGKQSAFVLDSEVVSAPQIRAA
                     ILPGQQTTISGNFSQAEAQNVANVLKYGSLPLSFQPSESETVSATLGLASLRAGLLAG
                     AIGLIVVFVYCLFYYRVLGVLTILSLALSGLIVYAVLVLLGRWIGFTLDLAGVAGFIV
                     AIGITADSFVILFERLKDEVRDGRTFRSAVPRAWLRARRTILSADAVSFLAAAVLYIL
                     AVGQVRGFAFTLGMSTVLDLVVVFLATHPLVALAAQSPLLSQPRLSGLGGAQRAGAAS
                     RSELATTGERS"
BASE COUNT          363 a          668 c          695 g          316 t
ORIGIN      
        1 tacccgggtg ccgccctcga agtcaatgcc caggttgaac ccacgcaata ggatcgacgc
       61 aaggcagatc acgacgagca ggcccgatag cgaataccag attcgccgcc gcccgacgac
      121 gtcgaacgct ccggttccgc tgtagaggcg ccctactatg cccgccatct caggacctct
      181 cccccgtggt agccagctcc gaccggctgg cggccccggc acgctgcgcc ccgccaagcc
      241 cggacagcct cggttgcgat agcaacgggg actgtgcggc cagtgccacc agcgggtgcg
      301 tggccaggaa caccactact aggtcgagta ccgtcgacat accgagggtg aaggcgaagc
      361 cccgcacctg gcccaccgca agaatgtaga gcacggcggc ggccaggaag ctcaccgcgt
      421 ccgccgacag aatggtgcgg cgcgcccgga gccaggcccg cggcaccgcg gagcggaagg
      481 ttcggccgtc ccgcacctca tccttgaggc gctcgaagag gatcacaaat gagtcggcgg
      541 tgatgccgat cgcaacaatg aacccggcta caccggccag gtccagggtg aacccgatcc
      601 accgcccgag cagcactagg accgcgtaga cgatgagccc tgacaacgcc agagacaaaa
      661 tcgtcaagac gccgagcacc cggtaataga acaagcagta gacgaacacc acgatcaacc
      721 cgatcgcccc ggcgagtagc cccgcccgca gcgaagcgag gcccagcgtg gcggagaccg
      781 tctcggactc cgaaggctgg aacgacagcg gcagcgagcc gtatttgagc acgttggcca
      841 cgttctgcgc ctcggcctgg ctgaaattgc cactgatggt ggtctgctgg ccgggcaaga
      901 tcgcagcccg gatctgcggt gccgacacca cctcactgtc caggacgaag gcggactgct
      961 tgccgatgtt gttcgacgtg tactgggccc agatgtcctc tccctggcgc ttgaatctca
     1021 gcagtacttc atatccggtg ccatccgggt tgaagcccgc tgaggcgttg gcgatctgct
     1081 ctccagagag gaaagcgggc cctagcacgt actttccggt gtcgtgctgg tcgcaggtaa
     1141 ccaggggcag gttcggatcg tcgttgcccc gtaaggggtc gggagccgcg cagttcagcg
     1201 ccgccagcgc ctgttgctgc accgctgggt cctggctctg gcgctgcgcc cgagcctgcc
     1261 ggatctgctc ggcgacctga ggatccgccg aatccgccgg gacactgccg accggcgctg
     1321 gtgtccggct aggagtcgcc ggtgtgctgc tgggcggcgc tggaggtggc ggggtcggct
     1381 cacccgacgg cggcggctcg aggagctggg gtggaacggg tgcaggtgca ccccccgatg
     1441 gcggcggttg cggcgagccc gagggtgtgc cgggagtgcc actgcccgga ggtgtgccgc
     1501 cgggagctgg tggaggtgtc ccggccgcca cttcggagtt caccggtcgg aagtacaact
     1561 tggcggtctg cccgagggta cgggcctggt caccgttttc accgggtacc gtgatgatca
     1621 aattggtccc atcgagtacg acctcggccc ccgtcacgcc gatgccgttg acccgttgct
     1681 cgatgatctg acgagcctgg tcgagagact ccttcggagg tggccgaccg tcgagggtcc
     1741 gggcggtgag agtcacccga gtgccgcctt tgaggtcgat acccagcttg ggggtgggct
     1801 gcccgccacc ggtgagaaag accagtgagt acaagacgac aacgatccca gcaaagatcg
     1861 ccaggttgcg ccaggggcgg aaatgcccgg ctggtggtgc cacggtgggt ggttctcctc
     1921 gttcacggcg cactgaccct gccgcctgca gcggcgaccg gctctaactg tgccagcgcc
     1981 tcaaacgacg cgggcggtgg ggctcgggtg cgggatcgta gcgctccgca ccacgtcagt
     2041 ca
//
LOCUS       DASVXZ010000903         4332 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_794998, whole genome shotgun sequence.
ACCESSION   DASVXZ010000903 DASVXZ010000000
VERSION     DASVXZ010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4332
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_794998"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..580
                     /locus_tag="VF788_19005"
     CDS             <1..580
                     /locus_tag="VF788_19005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936226.1"
                     /translation="RTTKIGARDKVRQALTTVVVTAGLAAACVGDPSNAPGAPSPDER
                     QVTASMWARTMRLALSPAFSQLGAQPQPDLDNPAATQQAVVTYLTNAGNATQQTIDRF
                     STIGAPPVANGQQILDRIRTQLVHTRTNLADAAAQLGAAHPNDSAAIGQAFGAAGNVV
                     RLIGVLATYPELRAAIDQTSECQHLAATNGRR"
     gene            777..4244
                     /gene="fdh"
                     /locus_tag="VF788_19010"
     CDS             777..4244
                     /gene="fdh"
                     /locus_tag="VF788_19010"
                     /EC_number="1.17.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006438133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:1344..1346,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase"
                     /protein_id="HEX8936227.1"
                     /translation="MGVRSWLEGWPLYRQLTGDDPSGRGAAVKSDRSRALQARTETAD
                     RVVKSICPYCAVGCGQRVYVRDEQVIQIEGDPDSPVSRGRLCPKGSASRQLVTAPTRE
                     TKVRYRRPHSTEWEDLDLDTAMNMIADRVIETRRRTWQDTDENGVVLRRTLGFASLGG
                     ATLDNEENYLMKKLYTALGAVEIENQARIUHSSTVPSLGTSFGRGGATTFQQDLANSD
                     CIIIQGSNMAECHPVGFQWVMEAKARGATIIHVDPRFTRTSALADIHVPVRAGSDIAF
                     LGGLIHYVLEHDAWFRDYVLAYTNAPMILREEFRDTEDLDGLFSGFNAESRHYDPSSW
                     QYEGTDVAAAAGQRDQWSTMHSDNGDGRSGSANRAAEVSRSEQAGSGGVPFHGSPERD
                     DTLAHPRCVFQVLKRHFSRYTPQLVADICGITEPEFLRVAEALTANSGRERTSAFVYA
                     VGWTHHTVGVQYIRTAAILQQLLGNIGRPGGGIMALRGHASIQGSTDIPTLFDILPGY
                     LPMPHAHEHLDLPQYVSADAGTKGYWGNMDAYTVSLLKAWWGDAATADNEFCFAYLPR
                     LTSGHSNYDTITKQLAGTCKGYFVVGENPAVGTANSKMNRMGLANLDWLVVRDFVMIE
                     SATFWKDGPEIESGELRTEDIGTEIFFLPAAAHTEKEGSFTNTQRMLQWHHKAVEPRG
                     DQRSELWFYFHLGRIIREKLARSSSGAGVPQASSGAGVPQDTVERDRPVLELTWDYPT
                     MGEHAEPDAEAVLAEINGVDADGAPLSSYTELKADGSTSCGCWIYCGCYAGGVNQPAR
                     RKPGSEQSWVAPEWGWAWPANRRILYNRASADSEGKPWSERKAYLWWDAGAKRWTGHD
                     VPDFPVTTPPDYQPPEGAEREDAIAGTEPFIMQADGRSWLYVPAGLTDGPLPAHYEPQ
                     ESPVANLLYHQQANPARQVFPHRLNRLAPSDGQPGADVFPYVFTTYRLTEHHTAGGMS
                     RWLPYLSELQPEFFCEVSPALAAERGLEHLGWATIVNPRGVIEARVLVTERMRPVRVG
                     GRTVHQIGLPYHWGVGNEALVSGDSANDLFGIALDPNVLIQETKVASCDIQPGRRPRG
                     PALLEYVAAHRARAGVTLATGNEHRTPPEDGEGRHRRITRDDLDGDVVGGPDGATGAK
                     GSMNKQERS"
BASE COUNT          760 a         1491 c         1452 g          629 t
ORIGIN      
        1 gcgcaccacg aaaatcggtg cacgcgataa ggtgcgtcag gcgctcacca cagtggtcgt
       61 caccgcgggg ctggcggcag cctgcgtcgg cgatcccagc aatgcacctg gcgcgccatc
      121 gccagatgaa cgacaggtca cggcctccat gtgggctagg acgatgcgcc tggcgctaag
      181 cccagcattc agccagcttg gcgcgcagcc ccaacccgac ctcgacaatc cggccgcgac
      241 gcagcaggcc gtcgtcacgt acctgaccaa cgcgggaaat gccacacaac agacgatcga
      301 tcggttttcc acgatcggag ctccaccggt ggccaatggc cagcagattc tcgaccggat
      361 acgcactcag ctcgtccaca cgcgaaccaa cctcgccgac gcggcggcgc agctcggggc
      421 cgcccacccc aacgactcag cggcgatcgg gcaggccttc ggcgcggccg gcaacgtagt
      481 caggttgatc ggcgtccttg ccacctatcc cgagctgcgc gccgccatcg accagacgtc
      541 ggaatgccag cacctggccg cgacgaacgg acggcgctga gccggcactt caccccgaca
      601 tggagacata tcggggaatt ccagccctca ttgaccccga tatgtctcca tgtcggggca
      661 gtaggcagcg gtgaggttgg tgcacgtttc gatcacaacg cggagggcta ctccgtggtc
      721 gtccggcaag ccgggagtct gcccgggacg gcgtgagcac tgctgggggt gtgcgggtgg
      781 gcgtgcggag ctggctcgag gggtggccgc tctaccggca gctgacgggg gacgacccgt
      841 cgggacgcgg ggcggccgtc aagtcggacc ggagcagggc tctgcaggcc cggaccgaaa
      901 ccgccgaccg ggtggtcaag tcgatctgcc cgtactgcgc ggtgggttgc ggtcagcggg
      961 tctacgtccg cgatgagcag gtcattcaga tcgagggtga tccggacagc ccggtgtccc
     1021 gcggccggtt gtgccccaag ggttccgcca gccggcaact ggtcaccgca cccacccggg
     1081 aaaccaaggt ccgctaccgc cgcccgcaca gcaccgagtg ggaagacctg gacctcgaca
     1141 ccgccatgaa catgatcgcc gatcgggtga tcgagacccg gcggagaacc tggcaggaca
     1201 ccgacgagaa cggcgttgtg ctgcgccgca ccctgggctt cgcgagcctg ggcggggcga
     1261 cgctggacaa cgaagagaac tacctgatga aaaagctcta caccgcccta ggtgcggtgg
     1321 agatcgagaa tcaagcccgt atttgacact cttccaccgt ccccagtctg gggaccagct
     1381 tcggccgcgg cggcgccacc acgttccagc aggacctggc caactctgac tgcatcatca
     1441 tccaaggctc gaacatggct gaatgccatc cggtcgggtt ccagtgggtg atggaggcca
     1501 aggcccgcgg ggcgacgatc atccacgtcg acccgaggtt tacccggacc agcgcgctgg
     1561 ccgacatcca cgtgccggtg cgcgcgggca gcgatatcgc cttcctcggc ggcctgatcc
     1621 actacgtgct cgagcacgac gcgtggttcc gtgactacgt cctcgcctac accaacgctc
     1681 cgatgatcct ccgggaggag ttccgcgaca ccgaggatct ggatgggctg ttctccgggt
     1741 tcaacgccga gtctaggcac tacgacccgt cgagctggca gtacgagggc accgatgtgg
     1801 cggcggccgc tgggcaacgt gaccagtggt caaccatgca cagcgacaac ggcgacgggc
     1861 ggtctggatc cgcgaaccgg gcagcggagg tctcgcgaag cgagcaggcc ggcagtggcg
     1921 gggtcccctt ccacggcagc cccgagcgcg acgacaccct ggcgcacccg cgctgcgtgt
     1981 tccaggtgct caaacggcac ttctcgcggt acaccccgca gctcgtggcc gacatctgcg
     2041 gcatcaccga gccggagttc ctgcgggtcg ccgaagcgct caccgcgaac tccgggcggg
     2101 aacgcaccag cgcgttcgtc tacgccgtgg gctggaccca ccacaccgtc ggagtgcagt
     2161 acatccggac cgccgcgatc ctccagcagc tgctgggtaa catcgggcgt cccggcggcg
     2221 ggatcatggc gctgcgcggg cacgcgtcga tccagggttc caccgacatc ccgacgctgt
     2281 tcgacatcct gcccggctac ctgccgatgc cgcacgccca tgaacatctg gacttaccgc
     2341 agtacgtttc cgctgacgcg ggcaccaagg gttactgggg caatatggac gcctacaccg
     2401 tcagcctgct caaggcctgg tggggtgacg cggccacggc ggacaacgag ttctgcttcg
     2461 cctacctgcc ccgtctcacc agcggccact ccaattacga cacgatcacc aagcagctgg
     2521 ccggtacctg caagggctac ttcgtggtcg gtgagaaccc ggccgtaggc acggcgaact
     2581 ccaagatgaa ccggatgggc ctggccaacc tggactggct ggtcgtccgg gatttcgtca
     2641 tgatcgagag cgccacgttc tggaaagacg gcccggagat cgagtccggt gagttgcgca
     2701 ccgaggacat cggcaccgag atcttcttcc tgccggctgc ggcgcacacc gagaaggagg
     2761 gcagctttac caacacccag cggatgctgc agtggcacca taaggccgta gagccgcgcg
     2821 gtgatcagcg cagtgagctg tggttctact tccacctcgg gcgaatcatc cgcgaaaagc
     2881 tggccagatc ttcctcgggt gcgggtgtcc cgcaagcttc ctcgggtgcg ggtgtcccgc
     2941 aagacaccgt agaacgggat cggccagttc tggagctgac ctgggactac ccgaccatgg
     3001 gcgagcacgc cgagccggac gccgaagcgg tcctcgccga aatcaacggc gtcgacgccg
     3061 acggtgcgcc gctgtcgtcc tacaccgaac tcaaggccga tggatccacc agctgcgggt
     3121 gctggatcta ctgtggctgc tacgccggcg gggtcaacca gccggctcgc cgcaagcccg
     3181 gcagcgagca gtcgtgggtg gccccggagt ggggctgggc ctggccggcc aaccggcgca
     3241 tcctctacaa ccgggcctcg gccgactccg agggcaagcc gtggagcgag cgcaaggctt
     3301 atctgtggtg ggacgccgga gccaagcgtt ggaccggcca tgacgtgccc gatttcccgg
     3361 tgaccacacc gccggactac cagccacccg agggcgctga gcgggaggac gccatcgcgg
     3421 gcaccgagcc gttcatcatg caggccgatg gccgatcgtg gctgtacgtg ccggccgggc
     3481 tgactgatgg tccgctaccg gcacattacg agccgcagga gtcaccggtg gccaacctgc
     3541 tctatcacca gcaggccaac ccggcgcggc aggtgttccc gcaccggctc aaccgcttgg
     3601 cccccagcga cggccagccg ggtgccgacg tgttccctta cgtgttcacc acctaccggc
     3661 tcaccgagca ccacaccgcc ggtgggatga gccgctggct gccctacctg tcggagctcc
     3721 agccggagtt cttctgcgag gtcagcccgg cgctcgccgc cgagcgcggt ctggagcacc
     3781 ttgggtgggc gacgatcgtc aacccccggg gagtgatcga ggcccgggtg ctggtgaccg
     3841 agcggatgcg cccggtccgg gtcggtgggc gcaccgtgca ccagatcggg ctgccgtacc
     3901 actggggcgt cggcaacgag gcgctggtct ccggcgactc cgccaacgac ctcttcggga
     3961 tcgcgctcga cccgaacgtc ctcatccagg agacgaaggt cgcctcctgc gacatccagc
     4021 ccggccggcg tccgcgcgga ccggcgctgc tcgagtacgt cgcggcgcac cgggcccggg
     4081 cgggcgtcac gctcgcgacg ggcaacgagc accgcacgcc gcccgaggac ggcgagggcc
     4141 ggcaccggcg gatcacccgc gacgacctcg acggcgatgt cgtcgggggt ccggacgggg
     4201 ccaccggggc caagggttcg atgaacaagc aggagcggag ctgacgtgga cgatccttcg
     4261 acaggctcag gacaggctct cctgacgggc gcggcgcacc agccggacgt ccaccgcggc
     4321 ccggaccagg cc
//
LOCUS       DASVXZ010000904         4103 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_795092, whole genome shotgun sequence.
ACCESSION   DASVXZ010000904 DASVXZ010000000
VERSION     DASVXZ010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4103
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_795092"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..1032)
                     /locus_tag="VF788_19015"
     CDS             complement(163..1032)
                     /locus_tag="VF788_19015"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8936228.1"
                     /translation="MAQRKTIRSRRLGKQIRRLRDDAQLTQEKLAELMNTDQPRQRGI
                     SAAHLSRVESGIARINSEHLDRIITVLNVEAEQAQQLDALRRRADEPGWWQEYSDIVT
                     EAVEMLVEIGEDATTAHSYDNVYVQGLLQTRPYAETLIGNARAFVSPINVDRMADLRM
                     RRQQRLSEDGFQGLVSVLTEGVIRTMVGGRDIMRGQLRHLIEVTRQLPVTIHILPFSA
                     GALPGTDNFVIFGFPHELDGEVVYVDSDTAQRVYEERTPVRQYTYIYDVALAQALPAR
                     ESQDLIRTVMEEL"
     gene            1252..1695
                     /locus_tag="VF788_19020"
     CDS             1252..1695
                     /locus_tag="VF788_19020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936229.1"
                     /translation="MTELPPVVEQLLLDVVADGFTVYCCGPRTAPTALAASYDWGNCV
                     DQLVMRSCDRVAAARMPKLGRVDVFAPEVVVWAYEGSAECTMRALLNLVHPQHPDAPT
                     DIYPAPRSLHIPRHYQRPMSIQLPSVTRAGARGARLEDLRRQLTP"
     gene            1852..4053
                     /locus_tag="VF788_19025"
     CDS             1852..4053
                     /locus_tag="VF788_19025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEX8936230.1"
                     /translation="MAARLVIGLGLTVLTLIFAARRVRWLQRLIQSGQPTGDRTTDLR
                     GRLKTQLVEVFGQRRLLKWTVPGLAHFFTFWGFVVLLTVYIEAYGALFSENFAIPLIG
                     HWALLGFLQDVIALAVLISIITFAFLRVRQNPEHRQRASRFYGSHTGGAWLILFMIFN
                     VIWTLFLFRGTEVNNGTFPYRSGAFASQAAGALLTPLGAGTNQVLETVGLLLHIGVML
                     AFLIIVLYSKHLHIFIAPINVAAKRMPKALGPLLPMESGGKEIDFEDPDEEDIFGRGK
                     IEDFTWKGMLDFATCTECGRCQSQCPAWNTGKPLSPKLVIMDLRDHLFAKAPYLLGDQ
                     PVPEDVDVLSLAAGNGHVPESGFGRVTGSGPEQAARPLVGTAETGGVIDPDVLWSCTT
                     CGACVEQCPVDIEHVDHIVDMRRYQVMIESEFPSELGTLFRNLENKGNPWGQNQSARM
                     DWAKGLDFEVPQLTEETLPDDVEYLFWIGCAGAFDDNARRTVRATAELLHRADVNYVV
                     LGDGETCTGDPARRSGNEFLFQMLAQQNVEVLNTVFEGRPPNRRKIVTTCPHCFNTLG
                     REYPQLDGHYEVVHHTQLLNQLVREGKLVPVAPAEGPTVTYHDPCYLGRHNEVYSPPR
                     ELVGASGAQLTEMPRHAERSMCCGAGGARMWMEERIGKRVNLDRVDEAIATGSAAIAT
                     GCPFCRVMLTDGLTTREAEGTATNTTEVLDVAQLLLASVKRAEPKPPTSSK"
BASE COUNT          720 a         1348 c         1303 g          732 t
ORIGIN      
        1 agcttgtcgt cctggaagcc gatcaggccg tgagccaccg cgaacgacag gcagccagcg
       61 ttgccgttgc tgaaggttga tttcatgtat cggccgttga ccaccgcgtt gtagttcgcg
      121 tcatcgagag tggggtaagg gttgggtgtg cgggccactg gatcacaact cctccatgac
      181 tgtgcggatc aggtcctgtg actcccgagc ggggagagcc tgggccagag ccacgtcgta
      241 gatgtacgtg tattgccgca cgggagtgcg ctcttcgtag acgcgctgtg ccgtgtcgct
      301 atccacatac accacctcgc cgtcgagctc atgcgggaac ccgaagatca cgaagttgtc
      361 ggttccgggt aacgctccag cgctgaaagg caggatgtgg atcgtcaccg gaagctgccg
      421 tgtcacttcg atcaggtgtc ggagctggcc acgcatgatg tctcggccgc ccaccatggt
      481 acggattaca ccttcggtca ggacagatac caagccctga aagccgtctt cgctgagccg
      541 ctgctggcgc cgcattcgca ggtcggccat ccggtcgacg ttgatcggcg acacgaaagc
      601 ccgcgcattg ccgatcaaag tttcggcgta aggccgggtc tgcagcagtc cctgcacgta
      661 gacgttgtcg tagctgtgcg cggtggtggc gtcctcgccg atctcgacga gcatctccac
      721 ggcctcagtg acgatgtctg agtactcctg ccaccagccg ggttcgtcgg cgcggcggcg
      781 taaggcgtcg agctgctggg cttgttcggc ttcgacgttg agcactgtga tgatccggtc
      841 caggtgttcg gagttgatcc gggcgatacc ggactccact cgcgacaggt gcgcagcgga
      901 gatgccgcgc tgccgcggct ggtcggtgtt catcaactcg gccagcttct cctgggtgag
      961 ctgagcatcg tcgcggagtc gccggatctg cttgcccaac cggcgagacc ggatcgtctt
     1021 gcgctgtgcc accgaacctc ctagagagca agatcgtgaa agttgcagta aaactacact
     1081 gaatgctaag tttgaactgc aagcaaaccg acgacaagcc tagatcatca gtcggagcgc
     1141 tcggttaccc acgcgcccgc gtccggcaat tcccccaccg acgacggtgg ttccggcctt
     1201 gactccccga ttcagccggg gccaccgtcc accatcgaga gcggtgacca cgtgacggaa
     1261 ctgccgccgg tggtggaaca actgctgctc gacgtcgtcg cggacggatt tacggtctac
     1321 tgctgcggtc cccggaccgc accgaccgcg ctggccgcct cgtacgactg ggggaactgc
     1381 gtcgaccagc tcgtcatgag gagctgtgac cgggtcgccg cagcgcggat gccgaagctg
     1441 ggtcgggtcg acgtgttcgc acccgaggtc gtcgtctggg cctacgaagg ctccgcggag
     1501 tgcaccatgc gcgcgctact caacctggtg cacccgcagc atcccgatgc gccgaccgat
     1561 atctacccgg cgccgcgctc cttgcacata cccaggcatt accagcgccc gatgtcgatc
     1621 cagctgcctt cggtgactcg agccggagcg cgcggggccc ggctggagga tttgcggcgc
     1681 cagctcacac cgtgatcacc gggatgttcc acgctagtgg tgagggttat cccagcagcg
     1741 gtctggctat ctactaccga gtaaccagcc gtagtctgcg actaggaaca cgcaggagtc
     1801 gccagctggc gtgcaggcaa ggctggcact gcggggaggt gggacaccgt gatggcagcg
     1861 cgactggtga tcgggctggg gctgactgtc ctgaccctca ttttcgccgc caggcgggtg
     1921 cggtggctgc agcgcctgat ccagtccggg cagccgacag gcgaccgtac tactgacctg
     1981 cgcgggcgtc tcaagaccca gctggtcgag gtgttcgggc agcgccggct attgaaatgg
     2041 acggtccccg ggctcgcgca cttcttcacc ttctggggct tcgtcgtcct gctcactgtc
     2101 tatatcgagg cctacggggc cctgttcagc gagaacttcg ccatcccgct gatcgggcac
     2161 tgggccctgc tgggttttct ccaggatgtc atcgcgctcg ccgtactcat ctccatcatc
     2221 acgttcgcgt tcctgcgggt ccggcagaac ccggagcaca ggcagcgagc gtcccgtttc
     2281 tacggctcgc acaccggcgg cgcctggctc atcctgttca tgatcttcaa tgtgatctgg
     2341 acattgttcc tgttccgcgg aaccgaggtg aacaacggca cctttcccta tcgctccggc
     2401 gcgttcgcct cgcaagccgc cggggcacta ctcacgccgc tgggcgcggg aaccaaccag
     2461 gtcctggaga cggtcgggct gctgctccac atcggcgtca tgctggcatt cttgatcatc
     2521 gtgctgtact ccaagcacct ccacatcttc atcgcaccga tcaacgtcgc cgcgaagcgg
     2581 atgcccaaag cactcggccc gctgctgccg atggagtcgg gcggcaaaga gatcgacttc
     2641 gaggatcccg acgaggaaga catcttcggc cgcggcaaga tagaggactt cacctggaag
     2701 ggcatgctcg acttcgcgac ctgcaccgag tgcggccgct gccagagcca gtgcccggcg
     2761 tggaacaccg gcaagccgct gtcccccaag ttggtcatca tggacctgcg ggaccatctg
     2821 ttcgccaagg cgccctatct cctcggtgac cagccggtac ctgaagacgt cgacgtcctg
     2881 tcactggccg ccggaaacgg ccacgttccc gagtccggtt tcggccgggt gaccggatcg
     2941 ggtcccgagc aagcggctcg cccactggtg gggaccgcag aaaccggcgg ggtcatcgac
     3001 ccggacgtgc tgtggtcgtg caccacctgc ggggcctgcg tggagcagtg cccggtggac
     3061 atcgaacacg tcgaccacat cgtcgacatg cgccgttacc aggtgatgat cgagtcggag
     3121 ttcccctctg agctgggcac gctgttccgg aatctggaga acaagggcaa cccttgggga
     3181 cagaatcaat ccgcccggat ggactgggcg aaaggcctgg acttcgaggt cccgcagctc
     3241 accgaggaga cgctgcccga cgacgtggag tacctgttct ggatcggctg cgcgggtgcc
     3301 tttgacgaca atgcgcggcg gacggtgcgg gccaccgccg agctgctgca ccgcgccgac
     3361 gtcaactacg tggtactcgg agacggcgag acgtgcaccg gtgaccccgc ccgccgctcg
     3421 ggcaacgagt tcctgttcca aatgctcgcc cagcagaacg tcgaggtgct caacactgtc
     3481 ttcgaaggtc gcccacccaa ccgccgcaag atcgtgacca cctgcccaca ctgcttcaac
     3541 accctggggc gggagtaccc gcagctggac ggccactatg aggtggtgca ccacacacag
     3601 ctgctcaacc agctggtccg cgagggcaaa ctcgtgccag tcgctcctgc tgagggcccc
     3661 acggtgacct accacgaccc gtgctacctc ggccggcaca acgaggtgta ctcgccgccg
     3721 cgcgagctgg tcggcgcctc aggtgcccaa ctcactgaga tgccccggca tgccgagcgg
     3781 tcgatgtgct gcggcgccgg gggtgcccgg atgtggatgg aggagcgcat cggcaagcgg
     3841 gtcaacctgg atcgggtaga cgaggcgatc gccaccggca gcgccgcgat cgccaccggg
     3901 tgcccgttct gccgggtgat gctcaccgac ggcctcacca cccgcgaagc cgagggcacc
     3961 gcaaccaaca ccaccgaggt cctcgacgtc gcccagctgc tgctggccag cgtcaaacgg
     4021 gccgagccaa agcccccaac cagctccaaa taatgcctct gtgacacccg caaccgctat
     4081 gtggttccgg atggcgaacc ggc
//
LOCUS       DASVXZ010000905         6707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1148618, whole genome shotgun sequence.
ACCESSION   DASVXZ010000905 DASVXZ010000000
VERSION     DASVXZ010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6707
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1148618"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VF788_19030"
     CDS             <1..782
                     /locus_tag="VF788_19030"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020642239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8936231.1"
                     /translation="TASIARVYDAVLNGKDNYEIDREVVRQLRKVAPGMSLMAWDNRN
                     FLIRVTRFIASQTGITQFLDCGSGLPTAENTHQVAQRLQPDSRVVYVDNDPVVLTHGR
                     ALLVENDQTHFSAADIFKPAEILNDDVVRKHLDFSEPIALFQIGTLPFYDGERSPQSI
                     MAEYIDALPAGSYVAISHFIDPETSELSQFARRLEQAFQHSPMGRGVFRTSTEIEGML
                     AGLELLDPGLVLCADWWPDGPRIKPLDTVQNCIVGAVARKP"
     gene            794..1609
                     /locus_tag="VF788_19035"
     CDS             794..1609
                     /locus_tag="VF788_19035"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8936232.1"
                     /translation="MLDPIAPTHVDTTKASIARVYDAALNGKDNYEIDREVVRRLEQI
                     APEIGRFTWDHRNFLIRVTRFIATQAGITQFLDCGSGLPTAENTHQVAQRIQPDARVV
                     YVDNDPVVLAHGRALLVENDHTHFSAADIFEPRQILNDEVVRKYLDFSEPIALFQLGT
                     LHHYNGERNPASIMAEYIDALPSGSYVAISHFLDPENEHTALAKRLQQIFVNSPLGSG
                     WFRPRAEIMAMLAGLELVEPGLTRCVDWWPDGPRLKPLEPAQHCIVGAVGRKP"
     gene            1944..3191
                     /locus_tag="VF788_19040"
     CDS             1944..3191
                     /locus_tag="VF788_19040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020635968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8936233.1"
                     /translation="MSKTDYYILVRVERGVRWIVEQYRSPATRTLVNKARSAAARLLA
                     PPAVASPSVATGKSVAPTSQPSGSHDVLASMSANVALRDLNLVDSLLAHLEDMEANES
                     DPDALARLYQLDHLAARLRRNAENLRVLAGRDAGSTRGAAAPLVDVIRAAMSSIEHYR
                     RIEIERAAALAVVDVVADDLGRLLAELLDNATTYSPPMSKITVSAHLTEQGSMLVRIE
                     DVGDPLPIDRLQALNAQLSATNPGSGSVEQMGLAIVRRLAGKHSIRVSLDSRAARGTT
                     ATVLLPPTLVCEAPATPWFAETPMMKLPRQAPVPVGAQPERAPAVVPPSREPESAEHE
                     KPRPVPTTTRNGLPRRIPQSLREFGAFPSSVPSPRDDPDADRRDEDLGESREQLMADL
                     GDFSEGEQAARQDRPAEKPRKTT"
     gene            3192..3632
                     /locus_tag="VF788_19045"
     CDS             3192..3632
                     /locus_tag="VF788_19045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HEX8936234.1"
                     /translation="MAADHATKNPADFASLINGFVKRVPGVTHALILSADGFPLTAST
                     SVSSDGAEQLAAIASGLLGLARNSAAIFGKGDCELIMIRLSRGHFLFMGIGESAGLAV
                     LTSARCDMKAVAYEMTQFVDQAADVLTPKARADLRRVITARRAD"
     gene            3668..4009
                     /locus_tag="VF788_19050"
     CDS             3668..4009
                     /locus_tag="VF788_19050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF742 domain-containing protein"
                     /protein_id="HEX8936235.1"
                     /translation="MRSKRIRLYALTGGRTRPRHHLLVETLISVPQYDPQVAGTLLPE
                     SRALYELARETTSIAEISAHLTIPLGVIRVLISDLAAQDVVFIHPTGFTYQYDRIILE
                     RILDGLKKLPA"
     gene            3984..4619
                     /locus_tag="VF788_19055"
     CDS             3984..4619
                     /locus_tag="VF788_19055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HEX8936236.1"
                     /translation="MDSRNYPLDVSSLTISAKIVVAGGFGVGKTTFVGSVSEVKPINT
                     EAWMTVAGEGVDPLPDSGKKTTTVAMDFGRIRLQPDLVLYLFGTPGQPRFWFLWDDLC
                     RGALGAVILVDTRKIQDSFAAVNYFENDSDIPFIVAVNKFDGELDYELDEVREALTLG
                     PDVLLTTCDARDPGSTSKALQELVSYTMSCTVSYGPDVTWGKEAQGKQEEG"
     gene            4624..5862
                     /locus_tag="VF788_19060"
     CDS             4624..5862
                     /locus_tag="VF788_19060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="styrene monooxygenase/indole monooxygenase
                     family protein"
                     /protein_id="HEX8936237.1"
                     /translation="MRKVLIVGAGQAGLQLALGLQSHDYEVTVMSARTPEEIRGGRVM
                     STQCMFGPALQHERDYDLNLWEKQTPNIEGLGLSIAGPDHERALDWLGGLDEYAQSVD
                     QRVKMSGWLELFEDRGGKVVYHGVMTSDVDALTTYYDLVIIAAGKGELVQLFDRDPSR
                     SPYTSTQRILAVVYVHGMAPRPEHPTMHAVRFNAVPGVGELFIMPCFTGSGPCDILFF
                     EGIPGGPLDCWSDRPPADEHLQRTLHLMRQFVPWEYERCHNVELTDGRATLTGGYPPV
                     VRQPVGELPSGGQVLGMADVVVANDPITGQGSNSASKCAASYLSSILKRGEQPFDRAW
                     MQQAFERYWSDAQHTTIWTNAMLAPPPEHVMNLLGAAGTYPEIAHRFVNGFADPSDYQ
                     HWFLDPEKASEYLASVTSPQ"
     gene            6050..6547
                     /locus_tag="VF788_19065"
     CDS             6050..6547
                     /locus_tag="VF788_19065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020667893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8936238.1"
                     /translation="MKIIITGGRGAGKTTFVGSVSDTHPIAVEAATDFGRITLHPDLV
                     LYLFGTSEPGHAGFIGALGAVVLVDPRRIEDAFEMISYFENGSDVPFVVAVNTVEDEL
                     PHELDEVREALALDTQVPLMTCDAQDPESAAKVLQELVSYTLNIGASGNVPGPRQSHP
                     LTGQD"
BASE COUNT         1285 a         2143 c         2056 g         1223 t
ORIGIN      
        1 ccacggcgag tatcgctcga gtctacgatg ctgtccttaa cggcaaggac aactacgaga
       61 tcgatcgcga ggtggtccgg cagctccgga aggtcgcgcc gggcatgagt ctcatggcgt
      121 gggacaatcg gaatttcctg attcgggtta cgcgattcat cgccagccag accggtatca
      181 cgcagttcct cgactgcgga tcagggttac cgacagcgga gaacactcac caggtcgctc
      241 agcggctcca gccggactcg cgcgtcgtgt atgtcgacaa cgaccccgtt gtgctcacgc
      301 acggccgagc gctgctcgtg gagaacgatc agactcattt cagcgccgca gatatcttca
      361 aaccagccga gatcctcaat gacgatgtcg tccgaaagca tctggacttc tccgaaccga
      421 tcgcgctgtt ccagatcgga accttgcctt tctatgacgg cgagcgcagc ccgcaaagta
      481 tcatggccga gtatatcgat gcccttcctg cgggttccta tgtggcgata agtcacttca
      541 tcgaccccga gaccagcgaa ttgagccagt tcgcccggag actcgaacag gcattccagc
      601 acagcccgat gggccgcggg gtatttcgta ccagcaccga gatcgagggc atgctcgcgg
      661 gcttggaatt actcgatccc ggcttggtgc tgtgtgccga ctggtggccc gacggaccac
      721 ggatcaagcc actggacacc gtacagaatt gcatcgtcgg agctgttgcg cgcaaaccct
      781 gaggaggact tcgatgctgg atcccatcgc acccacccac gtcgacacca ccaaagcgag
      841 tatcgcccgg gtctacgatg cagcgctcaa cggcaaagac aattacgaga tcgaccgcga
      901 agtcgtcagg cgccttgagc aaatcgcacc ggagataggt cgcttcacct gggaccatcg
      961 gaacttcctg atccgggtca cccggttcat cgccacccag gccggcatca cccaattcct
     1021 cgactgcgga tcgggactgc cgacggccga gaacacccat caggtcgccc agcgaatcca
     1081 accggacgcc cgcgtcgtat acgtcgacaa tgatccggtc gttctcgcac acgggcgtgc
     1141 gctgctcgtg gaaaacgacc atactcactt ttccgccgct gacatcttcg aaccgcgcca
     1201 gatcctgaac gacgaggtcg tccgcaagta cctcgacttc tccgagccga tcgcgctgtt
     1261 ccaactcggg acgctgcacc attacaacgg tgagcgcaat cccgcgagca tcatggcaga
     1321 atacatcgat gctctgccat cgggatccta cgtagcgatc agtcacttcc tcgatccgga
     1381 gaacgaacac accgccctcg ccaagaggct gcaacagatt tttgtgaata gcccgttggg
     1441 gagcgggtgg ttccggcccc gcgccgagat catggccatg ttggccggcc tggaactggt
     1501 cgagcccggc ctgacccggt gcgtcgactg gtggccagac ggtccacgac tcaagccgct
     1561 cgaacctgcg cagcactgca ttgtcggcgc agtcggccgc aagccctgac tgcccacagc
     1621 tgccagcgac accactcctc ccggactggt gctgagggcc cacgggagtt caccctgatg
     1681 actgacacct ttctgtgtag cgcaggggat accacccccg tcttcgctca cccgctccgt
     1741 gcgtagccga ggccacgact aatcccgcga ccagctctgc aactgccgac acggcaagtg
     1801 ttcagacctt gtcaccagtg gcgtagtgcg aactttgtac tgcgccgatc gcggcattgc
     1861 tcctaactca gagtagcaat cttaccctag tgtgtgtcac aaatcttgtg gatctgtcga
     1921 acgcacgagt acggtacgca accgtgtcta agaccgatta ctatatactt gtccgtgttg
     1981 agcgcggtgt ccggtggatt gtggagcagt accgcagtcc agccacccgc acgctggtga
     2041 acaaggcacg gtctgcggcc gcgcggctgc tggcgccgcc ggccgtcgcg tcaccatcgg
     2101 tagcgaccgg gaagtccgtc gccccaacca gccagccgag cggctcacac gatgtgctgg
     2161 ccagcatgtc cgccaacgtc gcgctgcgtg atctcaatct ggtggattcc ctgcttgccc
     2221 accttgagga catggaggcg aacgaaagcg atccggacgc gctagcccgg ctgtaccagc
     2281 tggatcacct cgctgcccgg ctgcgccgaa acgccgagaa ccttcgcgtt ctcgctgggc
     2341 gcgacgcggg cagtacgcgg ggcgcggccg cgcccctggt cgacgtgatc cgagctgcga
     2401 tgtcgtccat cgagcactac cgccgaatcg aaatcgagcg cgccgctgca ctggccgtgg
     2461 tggacgtggt cgccgacgac ctcggccgcc tgctcgcgga gctgctggac aacgccacga
     2521 cctactcacc accgatgtcg aagatcaccg tgagcgcaca cctgaccgag cagggcagca
     2581 tgctggtgcg catcgaggac gtcggtgacc cgctaccgat cgatcggctg caggcgctca
     2641 acgcccagct ttccgccacg aacccgggca gcggatccgt cgaacagatg ggcctcgcca
     2701 tcgttcgacg cctggctggc aagcacagta tccgggtaag cctggatagc agagccgccc
     2761 gtggcaccac cgccacggtg ctgttgcccc cgaccctggt gtgtgaagcc cccgccaccc
     2821 cctggttcgc cgaaacaccg atgatgaagc tgccccggca ggcgcccgtt ccggttggcg
     2881 cccagccgga acgggcgcct gctgttgtgc cgccctcgcg ggagcccgaa tcggccgagc
     2941 acgaaaaacc tcgccccgtc ccgaccacga cgcggaacgg cttgcctcga cggatcccgc
     3001 agagcctccg tgaattcggt gccttcccct cttcggtgcc cagcccccgc gatgacccgg
     3061 acgccgaccg ccgcgacgag gacctcggcg agtcgcgaga acagttgatg gcggatctcg
     3121 gagatttctc cgaaggtgag caggctgccc gccaggaccg gccggcggaa aagcctagaa
     3181 agacgacgtg aatggctgcc gaccatgcca ccaagaaccc ggcggatttt gcctcgttga
     3241 tcaacggttt cgtcaagcgc gtacccggcg tgacgcatgc cctgattctg tccgctgacg
     3301 gatttccact aaccgcgtcg acatcggtga gcagcgacgg agccgaacag ctcgcggcga
     3361 ttgccagcgg cctgctgggc ctggctcgca acagtgcggc aattttcggg aaaggcgact
     3421 gcgagctgat catgattcgg ctgtcacgcg gacacttcct cttcatgggg atcggcgaga
     3481 gtgccggcct ggcggtgctg acctcagccc gctgcgacat gaaagcggtc gcttatgaga
     3541 tgacacagtt cgtggaccag gccgcagatg tactgacacc caaggctcgc gccgacctgc
     3601 ggcgcgtcat caccgctcgg cgagccgact gaccgccgga ggaggggtga cggtggaaca
     3661 cattgtgatg cgcagcaaga gaatacgcct ctatgcgctc accggagggc ggaccagacc
     3721 gcgacaccac ctgttagtgg agaccctgat atcggtgccg caatatgatc cgcaggtggc
     3781 cgggacgcta ctgcccgagt cgcgggcgct ttacgaactt gcccgggaga cgacctccat
     3841 cgcggaaatt tccgcacacc tgacgatacc gttgggggtg atccgcgtgc tgatcagcga
     3901 tctagccgcg caagacgtgg tgttcatcca cccgaccggc ttcacctacc agtatgaccg
     3961 gatcattctg gagaggatcc tcgatggact caagaaacta cccgcttgac gtctcttcgt
     4021 tgaccatctc agcgaagatc gtagtcgctg gtggtttcgg agtcggcaag accacgtttg
     4081 tgggctcggt gtccgaggtc aaaccgatca acaccgaagc gtggatgacg gtggccggcg
     4141 agggcgtcga tccgcttccg gacagcggga agaagaccac cacggtggcc atggacttcg
     4201 ggcgcatcag gctgcagccg gatctcgtgc tctacctgtt cggcacccca ggccaacccc
     4261 ggttctggtt tctctgggat gacctgtgcc ggggtgcgct cggtgcagtc attctggtgg
     4321 acacccggaa gattcaagat tccttcgctg cggtcaacta ttttgaaaac gactccgata
     4381 tccccttcat cgtcgcggtc aacaagttcg acggcgaact cgactacgaa ttggacgagg
     4441 tgcgggaagc actgaccctg ggtccggacg tcctgttgac gacgtgcgat gcccgggatc
     4501 caggatcgac ttcgaaggcg ctccaggaat tggtgtccta caccatgagc tgcaccgtct
     4561 cctacggccc tgacgtgacc tggggtaagg aagcccaggg caagcaagag gagggttagg
     4621 aagatgcgga aagtattaat tgtgggtgcc ggtcaggccg gtttacaact ggcactcggt
     4681 ttgcaaagcc acgactacga ggtcaccgtc atgtcggctc gcactccaga ggagatccgt
     4741 ggtgggcggg tgatgtccac acagtgcatg ttcggccccg ccttgcagca cgaacgcgac
     4801 tatgacctca acctctggga gaagcaaacg cccaatatcg aggggctcgg cctctccatc
     4861 gcgggtcccg atcacgaacg tgccctggac tggctcggtg ggctcgacga gtacgcgcag
     4921 tcggtggacc agcgggtgaa gatgtccgga tggctggagc tattcgagga tcggggcggc
     4981 aaggtcgtct accacggtgt catgacttcc gatgtcgacg cattgaccac ttattacgat
     5041 ctcgtcatca tcgccgccgg taaaggggaa cttgttcagc tgttcgaccg ggacccgagc
     5101 cgttctccct acaccagcac gcaacgcatt ctggccgtgg tttatgtgca cggtatggca
     5161 ccacgaccgg aacatcccac catgcacgcg gtgcgtttca acgccgttcc cggggtgggt
     5221 gagttgttca tcatgccctg cttcactggc agtggcccat gcgacatcct gttcttcgag
     5281 ggtatccccg gcggtccact ggattgctgg agtgatcgcc caccggcgga cgagcacctg
     5341 cagcgcaccc ttcacctcat gcgccaattc gtgccatggg agtacgagcg ctgccacaac
     5401 gtcgagttga ccgatggcag ggccacgctg accggtggtt acccgccggt ggtccggcaa
     5461 ccagtcggtg agctgccctc cggcgggcag gtactaggca tggccgacgt cgtggtcgcc
     5521 aatgatccca tcaccgggca gggctcgaac agcgcgagca agtgcgccgc ctcgtacctg
     5581 tccagcatcc tgaaacgcgg cgagcagccc tttgaccggg cgtggatgca gcaggccttc
     5641 gagcggtact ggtcggatgc ccagcacacc accatctgga ccaatgcgat gctcgctccg
     5701 cctcccgagc atgtgatgaa cctgctcggg gccgcgggta cttacccgga gatcgctcac
     5761 cggtttgtca acggattcgc ggatccctct gattaccagc actggttcct cgacccggaa
     5821 aaggcttcgg agtatctcgc ttcggtgacc tcgccccagt gacatcgctg cagggcgcct
     5881 gatactgaaa acggtcggga gtcgatcaag ccggccgggg gtactagggg gcagcgtggt
     5941 cgggacaccg atcttcgacg agctacggga cctatttgac gcctcgccag cggggcgcgg
     6001 accgcaggcc cgtgccgagc agggttcgcc cgcggcggcg agacctccga tgaagatcat
     6061 catcactggt ggtcgcggag caggtaagac tacctttgta ggctcggtct cggatacgca
     6121 cccgatcgcc gtcgaggccg ccacggactt cggccggatc accctgcatc cggacctggt
     6181 gctgtacctg ttcggcacct cggagccggg gcacgccggc ttcatcgggg ccctgggcgc
     6241 tgtggtgctg gtggatcccc ggcggatcga ggacgcgttc gagatgatca gctacttcga
     6301 gaacggctcc gatgtcccgt tcgtcgtggc ggtcaatacc gttgaggatg agcttcccca
     6361 cgaactcgac gaggtgcgcg aagcgctcgc gctggacacg caggtaccgt tgatgacctg
     6421 cgatgctcaa gatccagaat cggctgccaa ggtgttgcaa gaattggtgt cctacacctt
     6481 gaacatcggc gcctccggca acgtcccagg gccacggcaa agtcatcctc taactggtca
     6541 ggattagcga caggtcccct tgcataaggg ggggtaggtg agcgcggcct tctgccgcta
     6601 atggcggagt cgcatgcgat cagcagcggt atggagggga ttggtgcgtg cggggccgcc
     6661 cagccagcgt ggtggctgga attccggaat gccactgacc atgtgga
//
LOCUS       DASVXZ010000906         6149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1052124, whole genome shotgun sequence.
ACCESSION   DASVXZ010000906 DASVXZ010000000
VERSION     DASVXZ010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6149
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052124"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(337..2616)
                     /locus_tag="VF788_19070"
     CDS             complement(337..2616)
                     /locus_tag="VF788_19070"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX8936239.1"
                     /translation="MPLSSSLDHSPPVERSIELSIGGMTCAACAARVERKLNKLDGVR
                     ASVNYATEKASVQATSGVALAELIAQVERAGYRAAPIEPEAPAPEEASDARVRYLLRR
                     LVVALLLGVPLGDLSMTVVLLPSSRFIGWQWVLLALTLPVVTWCAWPFHRNAAVNARH
                     GSTSMDTLVSLGITAATCWSVYTMFFHAGAGSRIDSGWGLIFRPAGSIYLDVSVGVTI
                     FLLAGRLFEARAKRRAGGALSGLARIAARDVSVRRDDGQEYRIPITQLRAGDHFVVRP
                     GEIIATDGEVVEGHSGVDNSAMTGESAPVEVSKGSPVIGGTIARSGRVVVCATKVGKE
                     TQLAQLMRLVEQAQNDKAGVQRLADRICGVFVPVVLGLAVLTFLGWLVIAGSVEPAFS
                     SALAVLIIACPCALGLATPTALMVASGRGAELGIFIKGHQALESAKAIDTVVLDKTGT
                     ITTGRMAVVDVALCEGTELDTVLRHAGAVEDASEHAVAAALTALARAGLGEVPAVTDF
                     TSLSGLGARGVVGGREVLVGSARLLIAQGIPVPATLEEQRVQWERRGCTTVVVAADGV
                     TEGAFALTDTVRPSAAAAVAELHRLGLRTVLLTGDNEATARTVGAQVGIEDVIAEVLP
                     HDKATVIETLQGQGRSVAMVGDGVNDAPALARADLGLAVVSGTDVALGAADLILMRNE
                     LTVAPQAIKLARSTLRTIHSNLAWAFSYNIAALPLAAFGLLNPLIAGGAMTLSSLFVV
                     TNSLRLRRFGRITKRQTMH"
     gene            complement(2654..4225)
                     /locus_tag="VF788_19075"
     CDS             complement(2654..4225)
                     /locus_tag="VF788_19075"
                     /inference="COORDINATES: protein motif:HMM:NF019982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8936240.1"
                     /translation="MRQSVCRRVLRCLVAPMMLLAAMTGSCTAGPSNRPPVAVRDANL
                     PPQSFRQTPPSALPLPPIGDYRRDSLPWRDCTDAISTALGTSSTRLVECSYLRVEATV
                     ARPTLGNSLKLDLTRIGTGPAPLVVLSETSGEPGTVRAARLAQQLPPAMLDRFTLIGL
                     ARRGTGPGEPLDCIPKTVRNRIISIDPDPADTAQLDALLDTTRTAIQTCVQDLGEVLT
                     TINSTDTADDLEQLRAALSAPVLNIISQGEASRSVIDFLHRYPSSAGRVVLDGTVDPT
                     LDDVAAAEAELVVADAGYTAFAADCVTRDCPLGSDPRGSLMTLGKALDRAPLQVGWQR
                     INAGIAYQAVLKTVGDPERWPQLSHALAAARDGDGTELAALMAPTLSAERSLPARFDP
                     ALATHCNDTPTRVPPERVQQLVHQWQQRSALFGPLFAARLLWCSAWPVPSPTPVAPQD
                     RTLPPVLVVATTGDPATPAEGARRTAESLPSGTLVIWQGQAHGALPRSLCTVDLVTRF
                     LMDASIPQQGTLCPP"
     gene            complement(4513..4734)
                     /locus_tag="VF788_19080"
                     /pseudo
     CDS             complement(4513..4734)
                     /locus_tag="VF788_19080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007033497.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
     gene            complement(4778..5716)
                     /locus_tag="VF788_19085"
     CDS             complement(4778..5716)
                     /locus_tag="VF788_19085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936241.1"
                     /translation="MVPLHQPFETALRGFNRQQVLDHLESLDGRIAIVAADRDAALVQ
                     VAELSRVLDHLRSESELLSHLRREAEKATAEVERILATPMAEASARIQRILRLAEEEA
                     AEAKAHIEAEIIASKAHADQDIAELKARADDQIAVLRAQASREAKSLLDHARRQCDQL
                     EAESAARREAAEHDAANAIAQREASANERIRDGELRSLARLQVMLRVMEEHLTDRVST
                     VKRDESALRELRAQVTSEAASLGTVRAEVTAAVLAAHQLLTDALGQVRKIPVEQALGE
                     PDPSQEPDVPTQRGAQSGRVYLLNTAEDRRLPRTPH"
     gene            complement(5888..>6149)
                     /locus_tag="VF788_19090"
     CDS             complement(5888..>6149)
                     /locus_tag="VF788_19090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4396 domain-containing protein"
                     /protein_id="HEX8936242.1"
                     /translation="LRAGVGFRQALAVALAADTVSIAVMEVLDNAVILAVPGAMNAGL
                     TSVLFWASLAFSLVVAFLLTMPVNRAMIARGKGHAVVHAYHH"
BASE COUNT         1028 a         2086 c         2009 g         1026 t
ORIGIN      
        1 catcagcccg cgagtaacgc cagcatcacg gtcgtcgatt cattggatgc atcctcctcg
       61 atacgcccga gcccctttcg gcagaggttt ccctctgggg gcggggcgtg cgaacagccc
      121 ggcagcggcc tggtccccac cgctcgccgg gctggtcgcg tgggttggct agccgaagtc
      181 tccgctcggc gtcggcaacg tcttcctcag ctagcccgtt tcgccggcgg tgtaacgggt
      241 cgttgttcgt cgaggaatcg ctcgaagacc atacgcagct cagcgcggaa gcgctcggtc
      301 tcgctccgga gggtcgcgac gtccggacag atcgcctcag tgcatcgttt gacgttttgt
      361 gatgcgcccg aacctgcgca agcgcaggct gttagtcacc acgaacagcg aggacaacgt
      421 catcgcgccc ccggcgatca gcgggttgag cagaccgaac gccgccaatg gcagcgccgc
      481 gatgttgtaa ctgaacgccc aggcaaggtt gctgtggatt gtgcgcaggg tgctacgggc
      541 gagcttgatt gcctgtggtg cgacggtcaa ctcattgcgc atcaggatca gatcggcggc
      601 gccgagcgcg acgtcggtgc cggagacgac cgccaaaccg agatcggcgc gggccagcgc
      661 gggtgcgtcg ttgacaccat cgccgaccat cgccaccgaa cgtccctgcc cctgcagcgt
      721 ctcgatcaca gtggccttgt cgtgtggcag cacctcagcg atgacgtcct cgatgccgac
      781 ctgagctcca accgtccgag ccgtggcctc gttgtcgccg gtgagaagca ccgtgcgcag
      841 cccgagccgg tgcaactcgg cgactgcggc ggcggcgctg ggccgcactg tgtcggtcag
      901 cgcgaaggcg ccttcggtca ctccgtccgc ggccactacg acggttgtac aaccccgccg
      961 ctcccactga acgcgttgct cctccagcgt ggctggcacc gggatgccct gcgcgatcag
     1021 cagccgtgcc gatccgacca gtacttcccg gcccccaacc acgcctcggg ctccgagacc
     1081 ggacaggctg gtgaagtccg tgaccgcagg gacctcaccc aaccctgcgc gggccagcgc
     1141 ggtgagggcc gcagcgacgg cgtgctcgga ggcgtcctcc accgccccgg cgtgccgcag
     1201 caccgtgtcc agctcggttc cctcgcacag ggcaacatca accaccgcca tccggccggt
     1261 agtgatcgtg cctgtcttat ccaacaccac ggtgtcgatg gctttggccg actccaaggc
     1321 ttggtgaccc ttgatgaaaa tgcccagttc ggctccgcgt ccggaggcca ccatgagcgc
     1381 cgtcggcgtg gccagaccca gcgcgcaggg gcacgcaatg atcagtaccg ccagcgccga
     1441 actgaacgcg ggttccaccg atcccgcgat gaccagccac ccgaggaagg tcaggaccgc
     1501 gagcccgagc accaccggaa cgaacacgcc acagatgcgg tccgcgagcc gctggacgcc
     1561 ggccttgtcg ttctgcgcct gctcgaccag ccgcatcaac tgggccagct gggtttcttt
     1621 gccgaccttg gtagcgcaga cgaccacgcg gccgctgcga gcgatggtgc cgccgatgac
     1681 ggggctacct ttggacacct caacgggcgc cgattcgccg gtcatcgcgc tgttgtccac
     1741 tccgctatga ccctccacca cctcaccgtc ggtggcgatg atctcaccgg gacgcaccac
     1801 gaagtgatca cccgctcgaa gctgcgtgat cggaatgcgg tactcctgcc cgtcgtcgcg
     1861 ccgcacggac acatctcgcg ccgcgatcct ggccagcccg ctcagcgcac caccggcccg
     1921 ccgctttgct cgcgcctcga ataaccgccc ggcgagcagg aagatcgtca cgccgacgga
     1981 cacgtcgagg tagatggaac cagcgggtcg gaagatcaat ccccagccgc tgtcgatccg
     2041 gcttcccgca ccggcgtgga aaaacatcgt gtacaccgac cagcaggtgg ccgcggtgat
     2101 tcccagcgac accaaggtgt ccatcgacgt cgacccgtgc cgggcgttga cggcggcatt
     2161 gcggtgaaac ggccaggcac accacgtcac gaccggtaat gtcagcgcca gcagcaccca
     2221 ctgccacccg atgaaccgcg acgagggcag cagcaccacg gtcatcgaca gatctcccag
     2281 cggcaccccg agcagcagcg ccaccaccag ccgccgcagc aggtaccgga cccgggcatc
     2341 ggatgcttcc tccggcgcgg gtgcctcggg ctcgatcggc gccgcgcggt agcccgcgcg
     2401 ctccacctgc gcgatcagct cggcgagcgc caccccggat gtcgcctgca cgctggcttt
     2461 ctccgtcgcg tagttaacgc tggcgcgcac gccgtccagc ttgttcagct tgcgctcgac
     2521 tcgagctgcg caggccgcgc aggtcatgcc cccgatggac agctcgatgg agcgctccac
     2581 gggtggcgag tgatcgagcg acgagctcaa cggcatgagg gcagctcacc tccgaactca
     2641 ctacggcaac tcgctacggc ggacacagtg tgccttgctg tggtatcgag gcatccatca
     2701 ggaagcgggt gaccaggtcc acggtgcaga ggctacgagg cagcgcgcca tgcgcctggc
     2761 cctgccagat caccaatgtt ccggacggca gcgactcagc tgttcttctg gccccttcgg
     2821 ctggggtcgc gggatccccg gtggtggcca ccacgagcac cggcggcagc gtccggtcct
     2881 gcggcgccac cggtgtcggc gagggcaccg gccacgcgct gcaccacagc agccgcgccg
     2941 cgaacagcgg accgaacagg gctgagcgtt gctgccactg gtgcaccagc tgctggacgc
     3001 gctcgggtgg cacccgggtc ggggtgtcat tgcagtgcgt tgccagggcg gggtcgaagc
     3061 gcgcgggcaa actgcgctcg gcgctcagtg tcggcgccat gagggcggcc agttcggtgc
     3121 catcaccatc gcgggcggct gccagggcgt gggacagctg tggccagcgc tccggatcac
     3181 caactgtctt gagcactgct tgatacgcga tgcccgcatt gatccgctgc catccgacct
     3241 gcagcggggc tcgatccagt gccttaccca aggtcatcag agaaccacgg ggatccgacc
     3301 ccagcgggca atcccgggtc acgcagtcgg cggcgaacgc cgtatagccg gcgtccgcga
     3361 cgaccaactc ggcctccgcc gcggcgacat catcgagggt gggatcaacg gtgccgtcca
     3421 gcaccacccg tcctgcggaa ctgggatacc ggtgcaggaa atcaatgacc gaccgcgagg
     3481 cctcaccttg ggagatgatg ttgagtaccg gcgcggacag cgccgctctg agctgttcga
     3541 ggtcgtcggc ggtgtcggtg gagttgatcg tggtgagtac ttcaccgagg tcttgcacac
     3601 aggtctggat cgcggtgcgg gtggtgtcga gcagtgcatc gagttgcgcg gtatcagcag
     3661 gatcgggatc gatactgatg atccggttcc ggacggtctt cggtatgcag tccagcggtt
     3721 cgcccggccc ggtgccgcgc cgggccagcc cgatcagggt gaagcggtcc agcatcgcgg
     3781 gcggcagctg ctgcgctagc cgagcggccc ggaccgtccc gggctccccg gacgtctcgc
     3841 tgagcaccac cagcggggcg ggaccagtgc cgatcctggt caggtccagc ttgagggagt
     3901 ttcccagcgt cggtctggcg accgtggcct cgacccgaag gtaactgcac tccaccagcc
     3961 gcgtgctgga tgtgccgagc gcggtgctga tggcatcggt gcagtcccgc cacggcaacg
     4021 agtcccggcg gtagtcaccg atcgggggca gtggcagtgc gctgggtggg gtctgccgga
     4081 agctctgtgg gggcaggttg gcgtcccgca ccgccaccgg gggccggttg gagggtcccg
     4141 cggtgcagct ccccgtcata gccgcgagca gcatcatcgg cgccaccaga caccgcaaga
     4201 cccggcggca cacagactgt cgcatccagg tcttggcctc gcattcaggt tctgggctgg
     4261 cgtcgcgatg ttgacaccct cccggtgagt ctgccgtgag cgtgatccgc cccgcctgtt
     4321 ccgccggtga gaacgtccac gatggcatcc aggccgaagt ccaggtcacg ctgggtgatc
     4381 actagtgggg gagcgatccg caaggtggtg gagtgggctt ccttgcacag cacaccgcgg
     4441 tccatcaacg cctccgccac catgcgtccg gtgggcccac cggcggagat gtggacacca
     4501 gcccacagct ctcgtccgcg tcacccggcc gagctgagct atcgcggcgg ctaccagcgc
     4561 gggatgccgg tgcccgaagt tcagcgccga gtagccggca aggaaatcga ggtaacgctt
     4621 accggctacg tcggtgaccc aggtgccctc gccgtaggag atcaccaccg gcagcgggtg
     4681 gtagttgtgc gtgctccagc gctcgtccgc gtcgacgtag cccacagtgt cgatcaagtc
     4741 agggtcgatc aagtcggtgt cgatcagctc ggtgcgatca gtgcggagtc cgaggcaacc
     4801 gccggtcctc ggcggtattc agcaggtaga cccgcccgct ctgggcgccg cgctgggtcg
     4861 gtacatctgg ctcctgagag gggtccggct caccgagtgc ctgctcgacc ggaatcttgc
     4921 ggacctgacc gagcgcgtcg gtcaagagct ggtgcgcggc gaggaccgca gcggtgacct
     4981 cggcgcgcac agtcccgaga gaggccgctt cactggtcac ctgagcgcgc aactcgcgca
     5041 gcgccgactc gtctcgcttg accgtcgaca cccgatctgt cagatgttcc tccatcaccc
     5101 gcagcatgac ttgcaggcgt gcgaggctgc gcagctcgcc gtcccggatt cgttcgttcg
     5161 ccgaagcctc acgttgtgcg atcgcattcg ctgcatcgtg ttcggctgct tcccggcgtg
     5221 cggcggattc cgcctcaagc tgatcgcact gccgtctggc gtggtcgagc agtgatttgg
     5281 cctccctgct ggcttgtgct cgtaggaccg cgatctggtc gtcggcccgg gctttcagct
     5341 cggcgatgtc ctggtcggca tgggccttgc tcgcgatgat ctctgcctca atgtgcgcct
     5401 tggcttcggc tgcctcctcc tcggccagcc gcaggatgcg ttggatccgg gcactggcct
     5461 cggccatcgg tgttgccaag atgcgctcaa cctcagcggt cgccttttcg gcctcccggc
     5521 gcaggtgaga gagcagctcg ctctccgatc gcaaatgatc caaaactctg ctgagttcgg
     5581 cgacctgcac caaggcggca tcccgatcgg ctgcgactat cgcgatgcga ccatccagcg
     5641 attcgagatg atccaggacc tgttgccggt tgaatccgcg tagtgctgtc tcgaagggct
     5701 gatgcagggg aaccaagtcg tcgctatccc gggatccgcg cacagccaca gatcgtagtt
     5761 gaacaatcac gatcaaacaa cagttcatcc cctggcaagg ttccgggcgg gtccagtgca
     5821 tccgtgatca acgattgtga tcgcggagat tcagatcccg gatagaaacg ctcgatattc
     5881 caaatgttca atgatggtag gcatgtacga ctgcgtgtcc tttcccgcga gcgatcatcg
     5941 cgcggttcac cggcatggtg agcaggaaag ccaccactag ggaaaaagct aacgatgccc
     6001 agaacaacac gctggtcaaa ccggcgttca tcgcgccggg cacggcgagg atgacggcgt
     6061 tgtccagcac ttccatcacg gcaatggata cggtgtcggc ggccagagcc accgccagcg
     6121 cttggcggaa gcccacgccg gcgcgcagg
//
LOCUS       DASVXZ010000907         8871 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1052239, whole genome shotgun sequence.
ACCESSION   DASVXZ010000907 DASVXZ010000000
VERSION     DASVXZ010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8871
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052239"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VF788_19095"
     CDS             complement(<1..656)
                     /locus_tag="VF788_19095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit B"
                     /protein_id="HEX8936243.1"
                     /translation="MPVTVASEPGKTRRPKIADRGEVHRVSGGLLDPRLLVRSTPDAL
                     RKLDPRVQFRNPVMFVVEVGCVLTTLSAIRSPSVFAWVIVMWLWLTVVFANLAEAIAE
                     GRGKAQAETLRRTKRETTARRLIDWHPDEPGRTEEEVPGTALRLGDHVVVEAGQIIPG
                     DGDVVEGIASVDESAITGESAPVIRESGGDRCAVTGGTKVLSDRIVVRITSRPGETFI
                     "
     gene            complement(656..2317)
                     /gene="kdpA"
                     /locus_tag="VF788_19100"
     CDS             complement(656..2317)
                     /gene="kdpA"
                     /locus_tag="VF788_19100"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEX8936244.1"
                     /translation="MSGAVAGWLQAALLVLALAVTYRPLGDYMAHVFTSPKHWRVERF
                     LYRMMGVDGDADQKWPTYLRSMLAFSVVSMLFLYGFQRLQNHLVLSLEFGPVTPDQSF
                     NTAASFVTNTNWQSYSGESTMGYLVQMAGLAVQNFGSAAVGIAIVIALIRGFTRSQTD
                     RIGNFWVDLTRGSLRLLLPIAVVFAVVLVAAGAVQNFAGPHELTTLAGAHQAIPGGPV
                     ASQEAIKELGTNGGGFYNANSAHPFENPNPLTNMVEIYLLLMIAFSLPRTFGKMVGDN
                     RQGYAVVGVMAVIWAASVAGLSYVESGVHSPAAMAAGAALEGKEVRFGPPASALFASS
                     TTLTSTGAVNAAHDSLTPFGGGITLFNMMLGELAPGGTGSGLYGILILAVVSVFVAGL
                     MVGRTPEYLRKKVQAREIKLASLYILTTPTLALVGTAVTIALRGARASIANPGPHGLS
                     EVLYAFTSTSNNNGSAFAGLSVNTVWYNSVLGVVMLLSRFTPMIFVLALAGSLARQKP
                     VPASAGTLPTHRPLFAALLLGVIFIVVGLTSFPAQALGPIAEGLR"
     gene            complement(2317..2406)
                     /gene="kdpF"
                     /locus_tag="VF788_19105"
     CDS             complement(2317..2406)
                     /gene="kdpF"
                     /locus_tag="VF788_19105"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HEX8936245.1"
                     /translation="MSVHNIVGLVVSVLLVAYLVVALVHPERF"
     gene            2818..3369
                     /locus_tag="VF788_19110"
     CDS             2818..3369
                     /locus_tag="VF788_19110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936246.1"
                     /translation="MLVRHDYLAHRGSEQAGVSLPGLLGLAVGFAASIAATMISRAFG
                     AGDDPRVGLVLLTLTALMVSAVTTVPGVIGAGALCWAFYSGFVLNRTGNLTLDRGGGP
                     VLLVIVLSATVASALAGLLHRAEVWPTEEFHGLPVLLPGGEVGLLQKWHHAEDHSWWR
                     WSVEFSNHTGRPDDWAPRLKAPE"
     gene            3626..4225
                     /locus_tag="VF788_19115"
     CDS             3626..4225
                     /locus_tag="VF788_19115"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HEX8936247.1"
                     /translation="MPTAGVWRWLPALTVLMCWGLFVLVWLTGAIYNARRAPAVRERS
                     PSISHWLIGLAAVLMLEQLVPASVWRPITVEARWLVVPGVAVLVVFTAFTLWARLALG
                     TMWTSSAVVKDDHVLRTDGPYGITRHPIYTGLLGMLAGTALIEGLGRWVVYFVLGVLL
                     VGVKIRAEERLLDHALGGVYDRYRQRVPLLIPRMRAARR"
     gene            4394..4948
                     /locus_tag="VF788_19120"
     CDS             4394..4948
                     /locus_tag="VF788_19120"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEX8936248.1"
                     /translation="MDCIQCREAISAALDGEEGEAESGAIDAHLAICGTCRQFADEAA
                     RVTRLARTTVVTQTPQVTLELVRTLDGLAMVLQALTDLDRDSTTCATAMMAHNSADMV
                     SATRAALDCADIAAAAQRILSRPTATDAGVIRAILEAAATAADRCAAECGEHAGHHGH
                     CRVHSESAQRAAALCRSELANITG"
     gene            5374..6141
                     /locus_tag="VF788_19125"
     CDS             5374..6141
                     /locus_tag="VF788_19125"
                     /inference="COORDINATES: protein motif:HMM:NF023007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX8936249.1"
                     /translation="MVLTDGMVRDLAAFGPFFAVETHTPESLPREPWHAMSELVDAPD
                     VLTGRVLAVRAALGAASGQEPGAVELRVAASVAHLGLVARLISPALAVAVTAGALLEV
                     GLPGVRWQRVLGGAFPMSLPLEDVSDIGDRDAKPELNSEDLAFLLASRVLEGPVRDLV
                     EVTMPLSVSRHVLWGNVASAVNGAASMIATCQPVWADRSRVIASLLLAQPPLRGTSTG
                     SVGGGFRRRNCCLIYRAAPEAAGAVCGDCVLFRHPHP"
     gene            complement(6069..7112)
                     /locus_tag="VF788_19130"
     CDS             complement(6069..7112)
                     /locus_tag="VF788_19130"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEX8936250.1"
                     /translation="MILCGAPTTLTATASAAPSAPVIAYITSQGTNSVTPIPVATNTS
                     SHPSIPVGSNPVGVTIAPDGKTAYVTNDVLRGTVTPIAVATNTPGRPIPVGGFPVGVA
                     ITPDGRTVYVANRGSNSVTPISVATGIPGRPIPVGSHPVGIAITPDGNTAYVTNELSG
                     TVTPIAVTTNTPGRSIPVGSFPVGIAIAPDGNTVYVTNVLSHTITPIAVATNTPCRPI
                     AVRPSPNGIAITPDGETAYVTSLNSGSGTVTPIALATNTPGRPIPVGSDPAGIAITPD
                     GNTAYVTNFSNGTVTPIAVATNAPGRPIPVGSFPFGIAITPGSGVGSLHGCGWRNNTQ
                     SPHTAPAASGAAR"
     gene            7757..7942
                     /locus_tag="VF788_19135"
     CDS             7757..7942
                     /locus_tag="VF788_19135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936251.1"
                     /translation="MDDPQAEEMLLTNASIALPAALAADGGGGQGRWRPLLGQLRALG
                     DPAMALAWQACWLLPGG"
     gene            8369..8791
                     /locus_tag="VF788_19140"
     CDS             8369..8791
                     /locus_tag="VF788_19140"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8936252.1"
                     /translation="MRAGVDIDSTLPPLICTGIIGKPGALVDVRHHLEHWAANTGLSP
                     SSLADLVLSAYEALANAAEHAYPSGHGPVDLVAARTADGRVLVTVRDHGRWRKPPLDP
                     GFRGRGLLMIKALTPRVEVLQGPQGTTVHMEWELPARG"
BASE COUNT         1551 a         2805 c         2934 g         1581 t
ORIGIN      
        1 tcgatgaagg tctcgcctgg ccgggaagta atccgtacca cgatgcggtc ggagagcacc
       61 ttggttcctc cggtgaccgc gcagcggtca ccgccagact cgcggatcac cggagcggac
      121 tcgccggtga tggccgactc atccacgctg gcgatgccct ccacgacatc accgtcaccg
      181 gggatgatct gcccagcctc aacaaccacg tggtcaccca gccgcagcgc cgtgcccggg
      241 acctcctcct cggttcggcc tggttcgtcg gggtgccagt cgatcaggcg ccgtgcggtg
      301 gtctcgcgtt tggtgcggcg tagggtttcg gcctgggcct tgccccggcc ttcggcgatc
      361 gcctcagcga ggttggcgaa caccaccgtc agccacagcc acatcacgat cacccacgcg
      421 aacacgctgg ggctgcggat ggccgacagc gttgtcagca cgcagcccac ctcgaccacg
      481 aacataaccg gattgcggaa ctggactcga ggatcgagct tgcgcagcgc gtcgggtgtg
      541 gagcgcacca gcagccgtgg gtccaacagg ccccccgaca cccggtgcac ctcaccgcgg
      601 tcggcgatct tcggacggcg ggtcttgccc ggctccgagg caacggtcac cggcattagc
      661 gcaacccctc cgcgatcggt cccagcgctt gggcggggaa ggaggtcaga cccaccacga
      721 tgaagatcac gcccagcagc aacgcggcga acaacgggcg gtgggtgggc aacgtgcccg
      781 ccgaggccgg aacgggtttc tgccgcgcca gcgatcccgc cagggcgagg acgaatatca
      841 tcggtgtgaa tctgctgagt agcatcacca cgccaagtac cgagttgtac cacaccgtat
      901 tcactgacag gccggcgaat gcggaaccgt tgttgttgct tgtcgaggtg aatgcgtaaa
      961 ggacctcgga caggccgtgc ggaccaggat tggcgattga tgctcgcgct ccgcgcagcg
     1021 cgatcgtcac tgccgttccg accagggcaa gtgtcggagt ggtcagaatg tacagcgagg
     1081 cgagcttgat ctcgcgggcc tggacttttt tccgcaggta ctcgggcgtg cgcccgacca
     1141 tcagcccggc aacgaatact gacaccacgg ccaggatcaa aatgccgtac aatcccgagc
     1201 cggtcccgcc cggcgctaac tcaccgagca tcatgttgaa cagggtgatg ccgccgccga
     1261 acggagtcag ggaatcgtgc gcggcgttca ccgcgcccgt ggacgtcagc gtggttgacg
     1321 aggcgaacaa cgccgaagcc ggcggcccga aacggacctc cttgccctcc agcgccgcac
     1381 ccgcggccat cgccgctggg ctgtgtacac cggattcgac atagctcagt cccgcgacgg
     1441 aggcggccca gatgaccgcc atcacgccca ccaccgcgta tccctggcgg ttgtcaccca
     1501 ccatcttgcc gaatgtgcgc ggcaacgaga acgcgatcat gagcagcaaa tagatctcca
     1561 ccatgttggt caacgggttc gggttctcaa atgggtgggc agagttcgcg ttgtagaacc
     1621 cacccccatt agttcccagc tccttaatgg cctcctggga ggccaccggg ccacccggga
     1681 tcgcctggtg agcaccagcc aacgtggtga gctcatgcgg gccagcaaag ttctgcacgg
     1741 ccccagcggc caccaacacc accgcgaata cgaccgcgat cggcagcagc agtcggagac
     1801 tgccgcgggt taaatccacc cagaagttgc cgattcggtc agtctgcgag cgagtgaaac
     1861 cacggatcag cgcgatcacg atagcgatac ccaccgctgc cgacccgaag ttctggaccg
     1921 ccaacccagc catctgcacc aggtaaccca tcgtggactc gcccgaatac gactgccagt
     1981 tcgtgttcgt cacgaacgag gcggcggtgt tgaacgactg atccggagtc accggcccga
     2041 actccagtga cagcaccaag tggttctgca accgctggaa cccgtacaag aacagcatcg
     2101 acaccacgga gaacgccagc atgctccgta gatacgtcgg ccatttctgg tcggcgtcgc
     2161 cgtcaacccc catcatccgg tacaggaacc gctcaacgcg ccaatgcttc ggtgaggtga
     2221 aaacgtgcgc catataatca cccaaaggcc ggtaggtcac cgccaaggcc agtaccaaca
     2281 gggccgcctg cagccaccct gccaccgccc cgctcatcaa aaccgctccg gatgcaccaa
     2341 ggccaccacc aagtaagcca ccaacaacac cgacaccacc aaacccacga tgttgtgcac
     2401 gctcacagtt cctccacccc cagagcgacc aaccccagca ccacgaacac cacggtgaca
     2461 agaagaacga agatcacgtc agtcatcctg gttcccatct cgatctgtca gtccgatgtc
     2521 gtcggcccaa cgaacacgcg gccgcctctt acacatgtga gtgaatcagc ggtcacggac
     2581 gagtaaagac gctccgggac gccccagcga gcttcttaac gcctctctaa cgccgcgagc
     2641 ccggctattg acgattttct aacactccac ccaggcttcg accggggttc acgtcagggt
     2701 cagcgcgacg ttagaaatcc gtattaagag catcagaata gcggcatggc cgttccctgt
     2761 gctcttctcg ggcgcatgct tgcggtgaac agcgccgaca gcaaaccgag gacacccatg
     2821 ttggtgcgac acgactacct ggcccatcgg ggctccgagc aggccggtgt gtccctcccc
     2881 ggtctgctcg gactggccgt cggcttcgcc gcgagcatcg ccgcgacgat gatctcccgg
     2941 gcattcgggg caggcgacga tcctcgcgtc ggcctggtgc tgctcacgct caccgccctt
     3001 atggtcagcg cagtgacgac ggtgcccggt gtgatcggtg caggcgcatt gtgctgggcg
     3061 ttctactccg ggttcgtcct gaaccgcact ggaaacctga cgttggaccg gggcggcggg
     3121 ccggtgctgc tggtgatcgt gctctctgca acggtcgcaa gcgcgctggc cggtctcctg
     3181 caccgcgccg aggtgtggcc caccgaggag tttcacgggc tgcctgtgct ccttcccggc
     3241 ggcgaggtag gcctactcca gaaatggcat cacgccgagg accacagttg gtggcggtgg
     3301 tccgtcgagt tctccaacca caccggccgt cctgacgact gggcaccgag attgaaagca
     3361 ccggagtgac ccaactggag ccgcacttgg tcgtcataag gcacgttcca gccgagaccg
     3421 tagaaatgtg tggacacggc cggcgcgtgg cgttcgagga aaactgtcag gtcggagccg
     3481 gacaggtccg agaccggctg gcttcgttgc ccgtccacgg tggcattctc cttcgcgtca
     3541 tggccctggg ttcggcagca ccggagggct gtccgcgcgg gtaccgtgct gctaggtccg
     3601 cagtgacaga tcgaggagat tcaccatgcc caccgcaggg gtctggcgtt ggctgccagc
     3661 gctgaccgtg ttgatgtgct ggggattgtt cgtcctggtc tggctgactg gagcgatcta
     3721 taacgcgcgc cgggcaccgg ctgtgcggga gcggtccccc tccatctcgc actggctcat
     3781 cggactcgct gcggtcctga tgctcgagca acttgtgccc gccagcgtct ggcgcccgat
     3841 cacggtcgag gcgcgatggc tggtggtgcc cggcgtcgca gtgctcgtcg ttttcaccgc
     3901 attcaccctg tgggccaggc tcgcgttggg cacgatgtgg acctcgtccg ccgtagtcaa
     3961 ggacgatcac gtgctccgca ccgacgggcc gtatggcatc acccggcacc ccatctacac
     4021 cggcctgcta ggcatgctgg ccggcaccgc actgatcgag ggattgggcc gatgggtggt
     4081 ctacttcgtg ctgggtgtgc tcctggtcgg ggtgaagatc cgcgccgagg aacggctgtt
     4141 ggaccacgct ctgggcgggg tttatgaccg gtatcgccag cgggtgccgc tgctcattcc
     4201 ccggatgcgg gcagccagaa ggtagttgcg gcacggctgc gcggcgggca gcctcgtgca
     4261 gctcttcgtc ccatggttgg ggacagccgg ttgagtatgg taagcatgcc gtctggttcg
     4321 gtgccgatca tgatcggaag ctcaacggaa caccgcgggg aaccttgagg atccaatgca
     4381 cgacaattgt tctgtggact gcatacagtg cagggaagcc atctcggccg cgctggatgg
     4441 cgaggagggt gaggcggaat cgggcgctat cgacgcccac ctggcgatct gtggtacgtg
     4501 ccgacaattc gccgacgagg cggcgcgcgt cacccggctc gctcgcacta ccgtggtcac
     4561 ccagacgccg caggtcactc tggagctggt gcgcaccctt gacggactcg ccatggtcct
     4621 gcaggcgctt accgacctcg accgcgactc gaccacctgc gccaccgcaa tgatggccca
     4681 caattccgcc gacatggtca gtgccacccg tgcggcactg gattgtgccg acatcgccgc
     4741 cgccgcccag cggattcttt cccgccccac cgccaccgac gccggggtca tcagggccat
     4801 cttggaggca gcggccaccg cagcggaccg ctgcgccgcg gaatgcggtg agcatgctgg
     4861 tcaccatggc cattgccgcg tccactccga aagcgcgcag cgagctgcgg cactctgccg
     4921 atcggaactt gcgaacatca ccggctgagt gatctgcgcg cctgatcccg tcgaagagag
     4981 taacatgctc accgatgcat aataatcgtg caaggaggat gccgggatga cgctttttca
     5041 aaaggggacc gtgctcacgt gcgcgcatga ggaatgtggc tgtcgcgtcc gcatcgatga
     5101 ggaatgccac tgcccgtccg gcgaccagtc ttacacctgt gcttgcggga cgccaatggt
     5161 cgtaacggat gacgccgata gcacgggagc cggtaccgaa tagccatcag ctactagctt
     5221 ccggcttgcc gcgtagaacc ggtgacgtga ggaatttcct gctcccgcgt ttcatgtcga
     5281 gccagccgct ggcgttgcgg tatttccgat cgattcgacg atcgaaaagc ccgacatcgg
     5341 tgcacctgcc ggagcttggg aggtcggtgg ggggtggtgc tgacggacgg catggtgcgc
     5401 gatctcgctg cattcgggcc attcttcgct gtcgagacgc acaccccgga gtccctcccc
     5461 cgggagccgt ggcatgcgat gagcgagttg gtcgacgccc cggatgtcct gacaggtcgg
     5521 gtcctcgcgg tccgcgcggc gctgggtgcg gctagtgggc aggaacccgg tgccgtggag
     5581 ttgcgggtgg ccgcatcggt cgcgcacctg ggcctggtcg cccggttgat ctccccggcg
     5641 ctggccgttg cagtcaccgc cggcgcgctg ctggaggttg gtctgccggg cgtgcgatgg
     5701 caacgggtgc tcggtggcgc atttcccatg tcattaccgc tggaggacgt cagcgatatc
     5761 ggagatcggg acgcgaaacc cgagctgaac tcggaagacc ttgccttcct gctggcgagc
     5821 cgagtgctgg agggccctgt tcgggacctg gtcgaggtca ccatgccgtt gtcggtgtcc
     5881 cggcacgtcc tgtggggaaa cgtcgcctcg gcagtcaacg gcgcggcgtc gatgatcgcg
     5941 acttgccagc ccgtctgggc ggatcgatcg cgagtgattg cgtcgttgct gctggcgcag
     6001 ccgcctctgc ggggtaccag caccggatcg gtcggcggtg gtttccgtcg ccggaattgc
     6061 tgcctgattt accgggccgc accggaagcg gccggggcgg tgtgcggcga ctgtgtgttg
     6121 ttccgccatc cgcatccgtg aaggctaccg acgccggagc ccggtgtgat cgcgatcccg
     6181 aacgggaagc tgccgacggg gatcgggcga ccgggtgcgt tggtggccac cgcgatcggt
     6241 gtcaccgtgc cattgctgaa gttggtgacg taggcggtgt tgccgtcggg agtgatcgcg
     6301 attccggccg ggtcggagcc gacggggatc gggcggccgg gtgtgttggt ggccagcgcg
     6361 atcggtgtca ccgtgccgct gccgctgttc aggctggtga cataggcggt ttcaccgtcg
     6421 ggagtgatcg cgatcccgtt cgggctgggc ctgacggcga tcgggcggca aggagtgttg
     6481 gtcgccaccg cgatcggcgt gatcgtgtgg ctgaggacgt tggtgacgta gacggtgttg
     6541 ccgtcgggag cgatcgcgat cccgaccggg aagctgccga cggggatcga gcggccaggg
     6601 gtgttggtgg tgaccgcgat cggcgtcacc gtgccgctga gttcgttggt gacgtaggcg
     6661 gtgttgccgt cgggagtgat cgcgatcccg accgggtggg agccgacggg gatcgggcga
     6721 ccgggaatcc cggtggccac cgagatcggc gtcaccgaat tactgcctcg gttggcaacg
     6781 tagacggtcc tgccgtcagg ggtgatagcg actccgaccg ggaatccgcc gaccgggatc
     6841 ggccggccgg gagtgttcgt ggccactgca atgggcgtca ccgtgccgcg gagaacgtca
     6901 ttggtgacgt aggcggtctt gccgtcgggg gcgatggtca ctccgaccgg gttggaaccg
     6961 acggggatcg aggggtggct ggaggtattg gtggccaccg ggatcggtgt caccgagttg
     7021 gttccctggc tggtgatgta ggcgatcacc ggagctgatg gtgccgcgct ggcagtggcc
     7081 gtgagcgtcg tcggcgcacc gcaaaggatc atcacgagcc cacctgcata cctaccgatt
     7141 tcacccggta cacgctgcac gccgatggtg aacaatacag atccagcagc cgaccagggg
     7201 atggcgatga accccacagg aagcagctgc ggggtcgcat gtgcgctcgg gaatcgacgc
     7261 acaaacgacg ggccttgtct ggaggcttcg tcgggtcccg ttcagtaact ccaagattca
     7321 cgacagagta ttcgtcgtgc tgcacggtta agttacccgg tggccactac acctttgcat
     7381 tccaggcaat tccgacatag aggctgttac acccgagtcg ggcaaaaggc acataagtta
     7441 cgctgatgcc tcacgggtcg gaagccaaca agctcaccgt agagggggtt gacccgccgg
     7501 cgcggcagcg cgcgcctcgc cggcggcaat tgtccgacac cccgttatcc gcggactggt
     7561 acttgaaact ggaagccatt cgagaatggc tttctgtgta tggccgcggg cggcaaccga
     7621 attcccaacg ggatggcgcg gcacgattcc aacgggttga gtgatggcgc gttgttcacg
     7681 tattcggaac agcaaagatg agtgctatgc gtaccatgtt ctgtatcggg ctggatgagc
     7741 tggttaccga tatcgcatgg acgacccaca ggccgaggag atgttgttga ccaacgcctc
     7801 gatcgcgctg cccgctgcgc tggcggctga cggtggtgga ggacaaggga gatggcgccc
     7861 cttgctcggc caactacgag cgctcggtga tcctgcgatg gcccttgcat ggcaggcctg
     7921 ctggctgcta ccgggcgggt gacttcgccc gaccccatgg aggcggctac tgcccggacc
     7981 agcaccgggc ggcacctatg tcgaagcgat agggccgccg attgacattc gtagtggaca
     8041 attggtccgg ataggagatt ggtttgccca actcgcccgg tcgtgcgcgg gtcccgtatg
     8101 ctgtcgtctg cccattgacg ttgagacgcc gaacggctgg agcgacggtg agcgataccc
     8161 acggttctag ctccgtgcta ccgcggaaac ctgcgccgtc gcatcgagga cgcacggacg
     8221 acatcgagga actgactgct ttggatctcg ccatctccgg caaccgcagg gacgcgctgg
     8281 ctggtctctc tgacgggggg caggaagatc ttcctgcgcc gcgcacttgt tagccgtgcc
     8341 agcggagggt agctcgccga tcgagatttt gcgggcaggt gttgacatcg attcgaccct
     8401 ccccccgcta atctgcactg gcatcatcgg caagcctggc gcgctggtcg acgtgcgtca
     8461 ccacttggag cactgggccg caaacacggg cctgtcgccc tcttccttgg ccgatctcgt
     8521 actttccgct tacgaggcac tggctaatgc cgccgaacac gcatatccgt ccggccacgg
     8581 cccagtggat ctggtggcgg cccgcaccgc cgatggtcga gtgttggtga ccgtcaggga
     8641 tcatggtcgg tggcggaagc cgcccctcga tcccggtttt cgcgggcgcg gccttctcat
     8701 gatcaaggca ttgactccgc gggtggaggt cctgcagggt ccgcagggca cgaccgtgca
     8761 catggagtgg gaactaccgg cgcgcggttg aggaccggct gggccgggtc atggtggcgc
     8821 tgcgcggaac ggccgctagg atcagggcgg gaccacgatg accgcggtga c
//
LOCUS       DASVXZ010000908         1860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1404676, whole genome shotgun sequence.
ACCESSION   DASVXZ010000908 DASVXZ010000000
VERSION     DASVXZ010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404676"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..1228
                     /locus_tag="VF788_19145"
     CDS             113..1228
                     /locus_tag="VF788_19145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004558469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS701 family transposase"
                     /protein_id="HEX8936253.1"
                     /translation="MWAGGNPSWRVCSRGFGRLFYRAESKKHAEQYVRGLLSPLERKK
                     GWTIAECVGELEPTALQRFLNLSPWDADALLECNREYAMEHLADPAGILVADPTGFAK
                     KGTKSVGVQRQYSGTLGRIDNCQIATFLCYVTPHRDRVLVDRRLYMPDKSWMADPARC
                     AAAGVPADLAFATRPQQVIEMIRAARAAGMPFAWFTADEEFGQNPGLCDYLETSRTPY
                     VMAVPKNTQFADTAGRLTQVDELARGLPPNTWQRRACGIGSKGHRVYDWALLDSDDPD
                     HQYLIRRSIDDGELAFYHCYNPHDASFGELVGVAGARWPIEECFGSAKNEVGLDNYQV
                     RTWNAWHRHITLAMLTHTFLAVTAHQAKKRGAKTPHN"
BASE COUNT          388 a          599 c          544 g          329 t
ORIGIN      
        1 tgccggtcgg cgcgcctccc gtgaattgag gccggggcgt ggaacgatac ttttgtgtct
       61 ctagcgtcga cgagtcagtc agttgtgtat gatgatgtgg tgtcgcgaga ggatgtgggc
      121 cggtgggaat ccgagctggc gagtctgctc gcgcggattc ggccgtttgt tctaccgggc
      181 ggagtcgaag aagcacgccg aacagtatgt gcgggggtta ttgtcaccac tggaacggaa
      241 gaagggctgg accatcgcgg agtgtgttgg cgagctggag ccgacggcgt tgcagcgctt
      301 tttgaacctg tcgccatggg atgcggatgc gttgttggaa tgcaaccgtg agtatgcgat
      361 ggagcatctg gccgatccgg cggggatcct ggtggcggat ccgacaggat ttgctaagaa
      421 gggcaccaaa tcggttggcg tgcagcggca gtattccgga acgttagggc ggatcgataa
      481 ctgtcagatc gccacgttcc tgtgctacgt gacaccccac cgggaccgcg tcctggttga
      541 ccggcgactg tacatgccgg acaagtcgtg gatggccgac ccggcccgct gcgctgccgc
      601 cggtgtcccg gcggacctgg cgttcgcgac caggccgcag caggtcatcg agatgatccg
      661 cgcggctcgc gcagccggga tgccgttcgc ctggttcacc gcagatgagg aattcggcca
      721 gaatcccggc ctgtgcgact atctcgagac cagccgaacc ccgtatgtga tggccgtccc
      781 caaaaacacc caattcgccg acaccgcggg acgcctaacc caggtcgatg aacttgcgcg
      841 agggttaccc ccgaatacct ggcaacgccg cgcctgcggc atcggatcga aaggacaccg
      901 tgtctacgac tgggcactgc tcgactccga tgatcccgac caccagtacc tgatccgccg
      961 atccatcgac gacggtgaac tcgctttcta ccactgctac aacccacacg acgcaagctt
     1021 cggagaactc gtcggcgtgg ccggggcgcg ctggcccatc gaagaatgtt tcggatcggc
     1081 caaaaacgaa gtcggactcg acaactacca agtccgcacc tggaacgcct ggcatcgaca
     1141 tatcaccctc gccatgctca cccacacctt cctcgccgtc accgcacacc aagccaaaaa
     1201 aaggggcgcc aaaacgccac acaactagac cagcagaaaa attcatctca cgcgtcgacc
     1261 gaaccggaaa ccactccacc catccaccgg cgcctgatcg cgctcaccct cgccgaaatc
     1321 cgtcgactgc tcaacctcgc tcgcagcagc gaaccagaaa tccgccacgg cctgcactgg
     1381 tcaatctttc ggcgctggca tcaagcccaa gcccgccgag cccacgttcg gcgccacctc
     1441 cgcctccaaa ccctaatgat ctagcgctgt agtactagtt gatctagcga ggctgcgcct
     1501 ctgaccgccg agcagcgtgg ctgagctggt cctttccggt atcgacctga ttttggccaa
     1561 gctcacgcag ggacctgcgg tcatgatcga cagaccgccg ccacccgccg cgccaaagtc
     1621 cgatcaccct tgatgaccgg ccgtgccacc cctaagtggc tggtcagaca acgagtctgc
     1681 agatgtggag cgggcacacc caaggtacgc cgcgagaaaa cttgactcaa atgtcaaagt
     1741 ctcgaagacc tagttgatcg agcggcacac catacgagcg cccagagcct cactgtacaa
     1801 cctcctgtcg agcatcaact ggggccggcg cgtggatcgg gtttttcaag cgtcagccga
//
LOCUS       DASVXZ010000909         3301 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_796154, whole genome shotgun sequence.
ACCESSION   DASVXZ010000909 DASVXZ010000000
VERSION     DASVXZ010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796154"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1398
                     /locus_tag="VF788_19150"
     CDS             <1..1398
                     /locus_tag="VF788_19150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015100028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEX8936254.1"
                     /translation="VDSSTQSCKVVIREAETGKLVRHGRSAHPEGTEVHPDAWWVALQ
                     AALDEAGGLADVAAVAVGAQQHGMVCLDEAGGVVRPALLWNDTRSADAAADLISELGG
                     GAAGRRAWSDAVGVVPVASFTVTKLRWLAQNEPAAASRTAAVCLPHDWLTWRLGTDPS
                     LERLRTDRGDASGTGYWSAVSGAYRNDLLSRALGHDAAVPRVLGPSEPAGTMTEGPLL
                     GPGTGDNAAAALGLDTRPGDVVVSIGTSGVACSVTDTPATDPSGTVAGFADATGRFLP
                     LVATLNAARVLDAVATMLRVDHEELSRLALSAPAGAEGLVVVPYLEGERSPDRPDATG
                     AVHGLRLATATAAHLARAAVEGLLCGMADAIDALVAAGARVERVFLIGGGARSGAVRR
                     IAPTVLGHPVLVPPPGEYVADGAARQAAWALSGNAQPPPWARAGVETYDSDVVEAVRV
                     RYAQARELTVARQHY"
     gene            1409..2878
                     /locus_tag="VF788_19155"
     CDS             1409..2878
                     /locus_tag="VF788_19155"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HEX8936255.1"
                     /translation="MQPLNAKSLPSLRAPVSTPTYDRNCVRTGVVHFGVGGFHRSHQA
                     MYLDRLMGEGKALDWGICGVGVLPSDCRMRDTMQAQDCLYTLVVKHPDGSLEPRVIGS
                     IVQYLFAPDDPEAVIEKLADERTQIVSLTVTEGGYNFHTVTGEFDASVPDVKHDLQPG
                     TAPKTTFGLITEALVRRRRHGLPPFTVMSCDNIPGNGDAARKSFVAFATLRDPELGAW
                     IEQQVRFPNSMVDRITPVTTDDDKVKISQQFGIDDQWPVVCEPFTQWVLEDEFGDRRP
                     PLEDVGVQLVEDVEPYELMKIRLLNASHQALCYFGYLAGYRLVHEVCQDALFQHLLLG
                     YMDREATPTLQPVPGIDLEEYKHKLLARFSNPNVRDTVARLCAESSDRIPKWLLPVIR
                     QNLATGGEIKRSAAIVASWARYAEGVDEQGRSIEVVDRLKDSLMANARRQREDPLAFI
                     ADREVFGDLIDDKRFTALYGASLASLYAHGARVTLENLR"
     gene            3024..3185
                     /locus_tag="VF788_19160"
     CDS             3024..3185
                     /locus_tag="VF788_19160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936256.1"
                     /translation="MLTVSPLAARSVLEELANAEIVTRKNVEQATIGYAPVARAGWMP
                     GPPEEKGGV"
BASE COUNT          534 a         1092 c         1147 g          528 t
ORIGIN      
        1 gtcgactcgt caacgcagtc gtgcaaagtt gtcatccggg aggcggaaac tggcaagttg
       61 gtccgtcacg ggcgcagcgc gcaccccgag ggcaccgagg tgcatcccga cgcctggtgg
      121 gtggcgctgc aggcggcgct ggacgaggcc ggcgggctgg ccgatgtcgc cgcggtggcg
      181 gtgggtgcgc agcagcacgg gatggtatgc ctcgatgagg ccggcggggt ggtgcggccg
      241 gctctgctgt ggaacgacac tcggtccgcc gacgctgcag cagacctgat cagcgagctg
      301 gggggcggcg cggcgggacg ccgggcgtgg tcggatgcgg tgggcgttgt tcctgtcgcg
      361 tccttcaccg ttaccaagct gcgctggctc gcccagaacg aaccggcagc ggcctcccgg
      421 acggcggcgg tctgcctgcc gcatgactgg ctgacctggc gtctcggcac cgatccgtcg
      481 ctggagaggc tgcggaccga ccgaggtgac gccagcggga ccggctactg gtccgccgtg
      541 agtggtgcct accggaacga cctcctgtca cgggcgctag gccacgacgc cgccgtgccg
      601 cgggtgctcg gcccgtccga gccggccggc accatgaccg agggccccct gctgggcccg
      661 ggcaccggcg acaatgccgc agctgccctc ggactcgata cgcgccccgg tgacgtcgtt
      721 gtctctatcg gcacctccgg cgtggcctgc tccgtgaccg acactcctgc cactgatccc
      781 tccggcacgg tggccgggtt cgccgacgcc accggccggt ttctcccgct ggtggccacg
      841 ctgaatgcgg cccgggttct cgatgccgtc gccacgatgc tccgcgtcga tcacgaggag
      901 ttgtccaggc tcgcgctctc ggccccggcg ggcgccgaag gtctcgtggt cgtgccgtat
      961 ctcgagggcg aacggtcccc tgaccgaccg gacgccactg gcgccgtaca cgggctgcgc
     1021 ctggcgaccg cgaccgcggc acacctcgca cgcgcggcgg tcgagggcct gctgtgcggc
     1081 atggcagatg ccatcgatgc tctggtcgcg gccggcgccc gcgtcgagcg ggtgttcctc
     1141 atcggtggcg gcgcgcggtc cggcgcggtc cggcggatcg ccccgaccgt gctgggccac
     1201 ccggtactgg tgccgccacc gggggagtac gtcgcagacg gggccgctcg acaggccgcg
     1261 tgggccctga gcggaaacgc gcaaccgccg ccctgggcac gtgcaggagt cgagacctac
     1321 gacagcgacg tcgtcgaggc ggttcgggtc cggtacgcgc aagcgcgtga gctcaccgtc
     1381 gcgaggcagc actactgaaa ggactcacat gcagccgctc aacgcgaaat ccttgccttc
     1441 gctccgcgcg ccagtgtcga caccgaccta tgaccgtaac tgtgtgcgca caggcgtcgt
     1501 gcacttcggc gtgggcgggt ttcaccggtc gcatcaggcc atgtatctgg accgtctcat
     1561 gggcgagggc aaggcgctgg actggggcat ctgcggtgtc ggcgtgctgc catccgattg
     1621 caggatgagg gacacgatgc aggcgcagga ttgcctctac accctagtag tcaaacatcc
     1681 agacgggtct ctcgaaccca gggtcatcgg ctcgatcgtg cagtacctgt tcgcaccgga
     1741 cgatccggag gcggtcatcg agaagctcgc cgacgagcga acgcaaatcg tgtcattgac
     1801 ggttaccgag ggcggctaca acttccacac cgtcaccggc gagttcgacg cgagcgtccc
     1861 cgacgtcaaa cacgacctgc agccgggaac tgccccgaag acgacgttcg ggctgatcac
     1921 ggaggcgctg gtccgcaggc gccgacacgg tctgccaccg ttcaccgtga tgtcctgcga
     1981 caacatcccg ggcaacggcg atgccgcgag gaagagtttc gtcgccttcg ccacactgag
     2041 ggatcccgaa ctcggtgcct ggatcgagca gcaggtccgt ttcccgaact cgatggtcga
     2101 ccggatcacg ccagtgacca ctgacgacga caaggtcaag atcagtcaac agttcgggat
     2161 cgatgatcag tggccggttg tctgcgagcc tttcacgcaa tgggtgttgg aggacgaatt
     2221 cggcgaccgt cgccctccgt tggaggacgt cggcgtgcaa ctcgtcgagg acgtcgaacc
     2281 ctacgagctg atgaagatac gcctgctcaa tgctagccat caggcgcttt gttacttcgg
     2341 ttacctcgcc gggtaccgac tggtgcacga ggtgtgccaa gacgcgctgt tccagcacct
     2401 actcctcggg tacatggatc gggaggcgac gccgaccttg cagcccgttc ccgggatcga
     2461 cctcgaggaa tacaagcaca agctgctcgc ccgcttctcc aacccgaacg tgcgggacac
     2521 cgtagcgcga ctgtgcgcgg agagctccga ccggatcccg aagtggttgc tcccggtcat
     2581 caggcagaac ctcgccaccg gtggtgagat caagcgctcg gccgcaatag tggccagctg
     2641 ggcgcggtac gccgaagggg tagacgaaca gggtcgatcg atcgaagtgg tcgaccgcct
     2701 caaggacagc ctcatggcga acgctcgccg ccagcgcgag gatccactcg ctttcatcgc
     2761 ggatcgagag gtgttcggcg acctgatcga tgacaagcgt ttcaccgcgc tctacggcgc
     2821 atcgctggcg tctctgtacg cgcacggcgc acgggtcacc ctggagaatc tccgctaacc
     2881 ggcgaggggg tgcggcgcga aacagcttgc cgcccggcga agcactcagg acgtccggca
     2941 agtcccgcga gccgactccg ccatcgcgcg gctcatcgag ctgcttccga aacacgctgg
     3001 tcaccgcccg gactgtccac cggatgctga ccgtgtcgcc tctagccgcg cgcagcgtgc
     3061 tggaagagct ggccaacgcg gagatcgtga cccgcaagaa cgtggagcag gcaaccattg
     3121 gctacgcgcc cgtggccagg gctggatgga tgcctgggcc accggaggag aagggcggcg
     3181 tttgaaccat tgcccaggcg gtcgcgttcc ccgctcgcgg tcctggtgat tcaggcgggc
     3241 gcgggcgtcg gggcgggctg gtgctggacc ggttcgatgc ggcgattcca ggtgggaagc
     3301 g
//
LOCUS       DASVXZ010000910         2269 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1149444, whole genome shotgun sequence.
ACCESSION   DASVXZ010000910 DASVXZ010000000
VERSION     DASVXZ010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1149444"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..453)
                     /locus_tag="VF788_19165"
     CDS             complement(<1..453)
                     /locus_tag="VF788_19165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021140576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936257.1"
                     /translation="MQQQLSVVGIDLAKRGFHVIGMDERGKIVLRKRLTREALLPFVA
                     RLSPVLIGMEACGGAHDWARRFREHGHPVKLIAPQFVKPYVKSHKNDPADAEAICEAV
                     TRPTMRFVPIKEVEQQDLQALHRARERVVKARTALVNEIRGLLGEYGIV"
     gene            complement(764..2065)
                     /locus_tag="VF788_19170"
     CDS             complement(764..2065)
                     /locus_tag="VF788_19170"
                     /inference="COORDINATES: protein motif:HMM:NF013752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8936258.1"
                     /translation="MTTAQVGYTPVHRWVKHVLGPTHTTVVVTIAWAVLCLLVAQRVT
                     SAALARALPAEHAGSGRSCLRRVRRWWRGPALDQATISPALIRLALTLLARQPVVVAL
                     DTTRLGPWEVWLAGIVIAGRTLPIGWAVIPYPWPKGRFRATTLALLQQLQQAFPAGVR
                     WTLVADRGFPSAVLFAQLRQGGTDFSVRLRLSDWVTVDRVYAPVRAHLMTGKLVVGQR
                     TAAMIGRGTVAQPLVPAAIVVSAAVVTPPRHKQNPGTARERAHRAKQHAQHRTHKQGR
                     KTKPPSAVAQRYAQTCVLFTTASTVAQAVAEYAGRMSIEETYRDWHHHWAVRAAVVGL
                     PTEAMVARLIGVVCLAYTVQMHLGQRVSRDPRSQQRRAQWTVTDRISWFWCGQRLFTD
                     PGYDWSSWLAQQWESLGQGVSMAPAPPVSKTASLAALEEAA"
BASE COUNT          396 a          748 c          723 g          402 t
ORIGIN      
        1 tactatacca tactctccta ataacccccg gatttcattc acgagcgccg tccgggcctt
       61 gaccacccgc tcacgcgcac ggtgcaacgc ctggaggtct tgctgctcca cctccttgat
      121 ggggacaaaa cgcatggtgg gccgcgtcac ggcttcacag atcgcttcgg catccgccgg
      181 atcattcttg tgcgacttca catacggttt gacaaactgg ggggcgatca gtttgaccgg
      241 gtgaccgtgc tcacgaaaac ggcgtgccca atcatgggca ccgccgcagg cttccatccc
      301 gatgaggacg ggggaaagcc gcgcgacaaa ggggagcagc gcctcccgcg tcaagcgttt
      361 cctgagtacg attttccctc gctcatccat ccctatgaca tgaaagcccc gctttgccag
      421 atcgatcccg acgacgctca gctgctgttg cattggactc gccttctcct aggttggaat
      481 gatttctttt taactgaaat cattctgact tatgaaagtc gttctgccaa ggcggggcca
      541 ttacattaac ctagcccctt gaacatgggg tggaacgtcg gtgtcaggcg tcagctcctc
      601 gggtgtgtaa gcgtggcgag caggaacagg ccggctgacg tgcggcgaag gcattatagg
      661 gagccggtgg cgcggcagcc cctgcgtgtt cgtgagcgaa cgccagcaca cccgcagagg
      721 cgaagagagg ggggtgagcc tctggggagt ggcccccttc gtgtcaagcc gcctcctcta
      781 gggctgctag tgaggcagtc ttggacacag gcggggctgg agccatgctt accccctgcc
      841 ccaggctctc ccactgctgg gccagccagc tactccaatc gtagccaggg tcggtgaaca
      901 gccgttggcc gcaccagaac caactgattc ggtcggtgac ggtccactgt gcgcgccgct
      961 gttggctcct gggatcccta ctcacacgct ggccgaggtg catctgcact gtataggcca
     1021 agcagacgac gccgatcagg cgggcgacca tggcctcggt cggtaggcct accacggccg
     1081 cgcgcacggc ccaatgatga tgccaatccc ggtacgtctc ttcgatcgac atgcgccccg
     1141 cgtactcggc cactgcctgc gccactgtcg acgcggtggt gaacaagacg caggtttggg
     1201 catagcgctg ggcgactgcg ctggggggct tcgtcttgcg cccttgctta tgcgtgcggt
     1261 gctgggcgtg ctgcttggcg cggtgtgctc gctcgcgggc agtcccaggg ttctgcttat
     1321 ggcgtggcgg tgtcactacc gcggcgctca cgacgatagc cgccgggacg aggggctgcg
     1381 ccacggtgcc ccgcccgatc atcgccgccg tccgctggcc gacaaccagc ttcccagtca
     1441 tcagatgcgc cctgacgggc gcgtagaccc ggtccaccgt cacccagtcg ctcaaccgca
     1501 accgcacgct gaagtccgtg ccaccctggc gcaactgggc aaagagcacc gcgctcggaa
     1561 agccacggtc cgcgaccagc gtccagcgca cgccggctgg gaaggcctgc tggagttgtt
     1621 ggaggagtgc caacgtcgtg gcccggaagc gccccttggg ccagggatac gggatgacgg
     1681 cccagccgat ggggagcgtg cgacccgcga tgacgatgcc cgccaaccag acctcccagg
     1741 gccccagccg ggtcgtatcc agcgccacca ccacgggctg ccgggccagg agcgtgagcg
     1801 ccagccggat cagcgctgga ctgatcgtcg cctgatcgag cgccggcccg cgccaccagc
     1861 gccgcacccg tcgcaggcac gaccggccag aaccggcgtg ctcggccggt aaggcccggg
     1921 ccagagcggc cgaggtgaca cgttgcgcga ccaggagaca cagcaccgcc caggcgattg
     1981 tcaccacgac agtggtgtgt gtaggaccga ggacgtgctt gacccatcga tggacgggcg
     2041 tatatcctac ctgtgcggtc gtcatgcctg tgctctcctc catgctgggg gtgatatgac
     2101 aagcacagtg tatgatgacc gcgttccgat gtcttcaagt caatggtggc cactccccag
     2161 gggcgccgcc cccgacctgt caaaacggga ctgcggtggt cacctcctcg aggatcgcct
     2221 gcaccgtctg ccacatctgg ataccgcggg ggtcctggta gcgctcggg
//
LOCUS       DASVXZ010000911         1567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1495337, whole genome shotgun sequence.
ACCESSION   DASVXZ010000911 DASVXZ010000000
VERSION     DASVXZ010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1495337"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..341)
                     /locus_tag="VF788_19175"
     CDS             complement(126..341)
                     /locus_tag="VF788_19175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936259.1"
                     /translation="MAIVETGKDNDLHEGQEQFGAGRKTGLDDLGDVGSFRLESGGAL
                     DLALSGVVAERAHECVGGLGASAGGTD"
     gene            1091..1342
                     /locus_tag="VF788_19180"
     CDS             1091..1342
                     /locus_tag="VF788_19180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936260.1"
                     /translation="MLLLLCEPVELAHALAAMFGVIAAVGHGKAGERCTAQFQVNAPD
                     GRREAGAALVNTICSRYGMSTDEIRDWTPPAEQQEVDGA"
BASE COUNT          314 a          482 c          464 g          307 t
ORIGIN      
        1 gccgcaggct ctacctaccc actggctttc ttggtggctg cagccaatag cctgctctcc
       61 ctggcgatca ttatgaccat gctgcgctcc cggacccgcg gcaaagcatc agaaaagccc
      121 gccggtcagt cggtaccacc cgcacttgcc cccagtccgc ccacgcactc atgagctcgc
      181 tctgctacca cgccggagag cgccaaatcc agcgcaccgc cggactcgag gcggaagctg
      241 cccacgtcgc ccagatcatc cagtcctgtc tttcgcccag cgccgaactg ttcttgtccc
      301 tcgtggagat cgttgtcctt gccggtctcg acgatcgcca ccggtgctgg gtgaccatgc
      361 gcaccggtag acccggattt atccgcacta cccgtgatcg gctacacgtc gtaggaggcc
      421 tgagcgacgc cgaccccctt gccgtgctcg ctcccggcga ctcaattggc actatcgcta
      481 tcgacatgcc ccaccggcgc cggctaagag tcaacggaat aattgaatca gctgactgta
      541 atgggattac catcgccgtg cgcgaggcct acccgaattg cccaaaatac atcaacgctg
      601 cgggtagaat aagagcacta ccactagggc aggtggtcaa tcgctgccga aacgaactca
      661 ccgacgctga tatatcgatt ctgcgtgcct ctcgcacctt tttcatcggc tcggtacacc
      721 cccgccgagg tgccgatgcg tcccaccgtg gaggggaacc aggatttgtc caagcggtca
      781 gcagaagcga acttcggttt ccggactacg ccggaaacgc catgttcaac acattgggca
      841 acctggctat caatccaagc gttggtttgc tggccatcgg accctgcggg gaccagctgc
      901 aagtcaccgg cacagcgaaa attctttttg gcgagcactc cgtagaaagt cccgaaggcc
      961 gagcagtctt ggtacaagtc gacgaatcta aaagatggag actggctgga aactaagcgt
     1021 cgggtgacct gagccttcat cattaacccg aagtttcgtg acgcttctat ttgtgtcaag
     1081 atcgcttgaa atgcttctcc tcttgtgtga gccggtggag ctggctcatg cgctggccgc
     1141 gatgttcgga gtcatcgcgg cggtagggca tggtaaagct ggcgagcgat gtaccgcgca
     1201 gtttcaggtc aacgcacccg acggtcgccg tgaagcggga gccgcactgg tcaacacaat
     1261 ctgcagccgg tacgggatga gtaccgacga gatccgcgac tggactccac cggcagaaca
     1321 gcaagaagtt gacggcgcat agaagggggc tgcctatctc cgccagtgtg tgtccctagc
     1381 cctttggcca gggcgcgcgg gaggcaaagg tgcccggagg accggacagg ccacagacag
     1441 tcagcggttt ccctggcggt cgcgacgctg cgtcgcgact gttatgggct ctcgggtgat
     1501 cagtgcgtgg atgatctggt cagggtgggc tggtcgcagt cggtggtgca gggcggtgat
     1561 gcagctg
//
LOCUS       DASVXZ010000912         3735 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_796862, whole genome shotgun sequence.
ACCESSION   DASVXZ010000912 DASVXZ010000000
VERSION     DASVXZ010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796862"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1503
                     /locus_tag="VF788_19185"
     CDS             <1..1503
                     /locus_tag="VF788_19185"
                     /inference="COORDINATES: protein motif:HMM:NF015863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEX8936261.1"
                     /translation="PILIVMALSGLVIMYTEPIQGLLSASAMRVDPHGRAPVDLQVQQ
                     AAADRVAPTGATLFRVVTPKGPDRVSEFYYSTGPAGVPYYQLDDKDVTYVYVDPYAAG
                     VTATGQPGDDLVGLANRLHGFLNNSSLKVALPSIPHLVAPSDNPDAFVDVEVGDLVIE
                     IAMGWALVLAGSGLYLWWPRRSQKGKTLLVPRLRKPGRLKWRDVHAASGIIALTMLIV
                     FITTGMPWSTYWGKAWSAVGSVVTPGKEVDAPSTLAKAGDLDRFGHHISWATLEDKVP
                     ASQPAEHLHQGGVHGGAGSPATTTAPAGLPARLSLGEVDRAAKLEGLKPGYGIVLPVN
                     TSGKGTTTYGSYQLSNAWPDRLSAEQTVYLDQFTGRTLARSDTASFGTIGQVTELGVL
                     THMGTQFGVIDRIVMTTGVLLLLTSIGTSFVMWWIRRPSGRAGLPKRPMNPKLPLVMT
                     AISLVVAVVYPLWGLSALIVVVLDRFVIRRIRRLRSTFGLPPKPDTPSPA"
     gene            complement(1545..2825)
                     /locus_tag="VF788_19190"
     CDS             complement(1545..2825)
                     /locus_tag="VF788_19190"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936262.1"
                     /translation="MDPAQHAQSVWRDGPFQLFWTGQTISSAGSQVTLVVLPVLIFQL
                     TGSAGRTAALLTVEAAPYLVFGLFAGAITDRANRRLVMITCDLSRSFAVATVALAAAL
                     DVLTIPHVYLVAAITGTAFVWHDSGLFGALPAIVGRARVTAAFGALISGEQVLRIGAT
                     ALGGGLVATLGAAPALWMDAASYALAATTLALVPRPFGTGEVPPRTGTLFAITGRDIA
                     AGLRYLRRHPVIWPLTVTGAGNALSGGAVLGLLVVYGVRQLGLTDDYTRLGLLFSAGG
                     IGALCAGLSLALLGRRVTQTRITLVALPVNVITVVVLALITDLPTSLLLLFIFGGTTT
                     LIITNGIALRQQLTPDRLQGRVNVTARLIAYSGTPIGAALGGLIADHTSISVTYLIMA
                     FGSAAATFYAWTSPLRTTDEAAIIQFKNDAEQAC"
     gene            complement(3011..3298)
                     /locus_tag="VF788_19195"
     CDS             complement(3011..3298)
                     /locus_tag="VF788_19195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936263.1"
                     /translation="MAGLAIVVSPALSILKTTLKASYKTMLLVMIGKTEQVMVSGAQH
                     LGHQPSYVSTPCRVHGSTPIPARADQTSKFQLARCCDTDGLADPAAAAVAI"
     gene            complement(3546..3734)
                     /locus_tag="VF788_19200"
     CDS             complement(3546..3734)
                     /locus_tag="VF788_19200"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HEX8936264.1"
                     /translation="MRDIVPDIPAGCEQGVCGACRTTVLAGEPDHRDELLSSTDRAAG
                     AMLICVSRAHSDRLILDL"
BASE COUNT          621 a         1204 c         1323 g          587 t
ORIGIN      
        1 cccatcctga tcgtgatggc cctgtcgggc ctggtcatca tgtacaccga accgatccag
       61 gggctgctct cggccagcgc catgcgggtc gacccgcacg gccgggcgcc ggtggacctg
      121 caggtccagc aggcggcggc cgaccgggtc gccccgacgg gcgccacgct gttccgggtc
      181 gtgaccccga agggacccga ccgggtcagt gagttctact actcgaccgg gccggcgggg
      241 gtgccctact accagctgga tgacaaggac gtgacctacg tctacgtcga cccgtacgcg
      301 gcgggagtga cagccaccgg ccagccgggc gacgacctcg tgggactggc caaccggctg
      361 cacggcttcc tgaacaacag ctcgctcaag gttgcgctcc cctcgatacc gcacctggtc
      421 gcgccctcgg acaaccccga cgccttcgtc gacgtcgagg tcggcgacct ggtcatcgag
      481 atcgcgatgg gctgggcgct ggttctggcg ggcagcgggt tgtacctgtg gtggccgcgc
      541 cgcagccaga agggcaagac gttgctggtc ccccggttgc gcaagcccgg tcgcctcaag
      601 tggcgcgacg tgcacgcggc cagcgggatc atcgccctga cgatgctgat cgtcttcatc
      661 acgaccggca tgccgtggtc gacctactgg ggcaaggcgt ggagtgcagt gggcagcgtg
      721 gtgacccccg ggaaggaggt cgacgcgccg tccaccctgg cgaaagccgg tgatctcgac
      781 cggttcggtc accacatctc ctgggccact ctggaggaca aggtccccgc gtcgcagccg
      841 gccgaacacc tgcaccaggg cggagtccac ggcggtgcgg gctcacctgc caccacgacc
      901 gcaccggcgg gcctgccggc ccggctctcc ctcggggagg ttgaccgggc cgcgaagctg
      961 gagggactca agcccggcta tggcatcgtg ctgccggtca atacgtccgg gaaggggacg
     1021 acgacctacg gcagttacca gctgtccaac gcctggcccg atcggttgtc cgctgagcag
     1081 accgtgtacc tggatcagtt caccggccgc acgctggcgc gcagcgacac cgcctcgttc
     1141 ggcacgatcg gccaggtgac cgagctcggt gtgctgaccc acatgggcac ccagttcggg
     1201 gtgatcgacc gcatcgtcat gacaaccggg gtcctgctcc tgctgaccag catcggcacg
     1261 tcgttcgtga tgtggtggat ccggcggccc agcggccgcg cgggcctgcc caagcgcccg
     1321 atgaacccca agcttcccct ggtgatgacc gcgatcagcc tggtggtcgc cgtggtctac
     1381 ccactgtggg ggctctcggc gctcatcgtc gtcgtgctgg accgcttcgt tattcgccgg
     1441 atccgccgct tgcgcagcac cttcggcctg cccccgaaac ccgatacgcc aagcccggcc
     1501 tgaccgcgta agtgacaccg tcctgcgggt aagagcgcca cgtgtcagca ggcctgttcg
     1561 gcgtcattct tgaactggat gatggccgcc tcgtccgtcg tgcgcagcgg ggaggtccac
     1621 gcgtagaacg tggccgcggc ggagccgaag gccatgatca gataggtgac actgatgctg
     1681 gtgtggtcgg cgatgagacc gcccagggcg gcgccgatag gggtgccgct gtaggcgatc
     1741 aagcgggcgg tgacgttgac tcggccctgg agccggtcgg gggtgagctg ttgccgcagg
     1801 gcgatgccgt tggtgatgat cagagtcgtg gttccgccaa agatgaagag cagcagcaag
     1861 ctggtcggca ggtcggtgat cagcgccagc acgaccaccg tgatgacgtt gacgggcagc
     1921 gcgacgagag tgatccgggt ttgggtgacc cggcggccca ggagtgccag tgacagcccg
     1981 gcgcatagcg cgccgatgcc tccggcggag aacagcaagc ccagccgggt gtagtcatcg
     2041 gtcaggccga gctggcgcac tccatagacc acgagcaggc cgaggacggc gccaccggag
     2101 agggcgttac cggcgccggt gacggtgagt ggccagatca ccggatgccg gcgcaggtag
     2161 cgcaggcccg cggcgatgtc acggcccgtg atagcgaaca gcgtgccggt tcgtggcggg
     2221 acttccccgg tgccgaatgg gcgtgggacg agggcgaggg tggtcgcggc gagcgcgtag
     2281 ctggcggcgt ccatccacag cgcgggggcc gcgccgaggg tggcgacgag cccgccaccc
     2341 agggcagtcg cgccgattcg tagcacctgc tcgccggaga tcagtgcccc gaatgccgcg
     2401 gtcacccgcg ctcgtcccac gattgcgggc agggcgccga acaacccgga gtcgtgccag
     2461 acgaacgcgg tccccgtgat ggccgcgacg aggtagacgt gcgggatcgt cagcacgtcg
     2521 agcgcggcgg ccagcgcaac ggtggcgacg gcgaaggacc tcgacaggtc acaggtgatc
     2581 atgaccagac ggcggttggc gcggtcggtt atcgcgccgg cgaacaatcc gaacaccagg
     2641 tatggcgccg cctccacggt cagcagcgcc gcagttcgcc ctgccgaccc ggtgagctgg
     2701 aagatcagga ccggcagcac cacgagggtg acctgactgc cggcgctcga gatggtctgc
     2761 cccgtccaga acagctggaa aggtccgtcg cgccacactg actgcgcgtg ctgcgccgga
     2821 tccacccggc gaccctacga tcgcgctgga gccatgcgca atgagactgc aataggccgc
     2881 cacttgcgac aaggtctggt cctgcagctg cgtcccagcg ggtccaaggt gctcggcgaa
     2941 ctgagaatca catccgcacc cgaccgagga cggtacccag tcccagccgg agaacgttga
     3001 tcccgggtaa tcagatcgct acggccgccg cggcagggtc ggccaggcca tcggtgtcac
     3061 agcacctggc cagctgaaat ttgctggtct ggtcagctcg cgccgggatg ggcgtcgagc
     3121 cgtgtacacg acaaggggtg gacacgtacg acggctggtg gccgaggtgc tgcgcaccgc
     3181 taaccatcac ctgctcagtt ttcccgatca tgactaaaag cattgtcttg tagctggcct
     3241 tcaacgtcgt tttcagaatg gatagggccg gcgacacgac gatcgccagt cccgccaaag
     3301 gcacctccag gacgttcgcc ccacggtggg cgtccgaaag ctcaagcggc gttctgaaat
     3361 gtgagtttgc gtcggcgagg cacattcggc gataagaagc tgtcgccgac ctgcagcttg
     3421 tcacatgatg tctgccgccg cggggacttg gccgggtgtc tgggctgccg ttgatgtgca
     3481 cgatgtactg gtgctgtgtg acatcgatgg cggctgctgg cgggatcagc gtggttggtc
     3541 ggtggtcaca ggtcgaggat gagccggtca ctgtgggcgc gggagacgca gatcagcatg
     3601 gcgccagcgg cgcggtcggt gctgctgagg agctcgtcgc ggtggtcggg ttcgccggcg
     3661 aggaccgtgg tgcggcatgc cccacaaacg ccctgttcac atccggcggg gatgtcagga
     3721 acgatgtcgc ggatg
//
LOCUS       DASVXZ010000913         2225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1150414, whole genome shotgun sequence.
ACCESSION   DASVXZ010000913 DASVXZ010000000
VERSION     DASVXZ010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1150414"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..>2225
                     /locus_tag="VF788_19205"
     CDS             108..>2225
                     /locus_tag="VF788_19205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX8936265.1"
                     /translation="MALSSLLDVLAQRVLVADGAMGTMLQSVPLSLDDFAGLEGCNEI
                     LNVTRPDVVRAVHRDYLEAGADAVESNTFGANLANLAEYGIGDRIRELAEAGAALARE
                     VADEFIEADRQRFVLGSVGPGTKLPTLGHISFTELRDAYVEQVRGLLAGGVDAVLVET
                     SQDLLQCKAAVIAARRAMVAEGRHVPIITQVTVETTGTMLLGTEIGAALTALEPLGID
                     LIGLNCATGPAEMSEHLRQLAKYSRIPLSVMPNAGLPELGTAGAAYPLTPDELATALA
                     GFVTEFGVRLVGGCCGTTREHIAAVVQAVTDLQPRRRRPRPEPGVSSLYSAVPFRQDA
                     SVLMVGERTNANGSKAFREAMLAGRLDDCVQIARAQTRDGAHLIDLCVDYVGRDGAVD
                     MAELAGRLATASTLPVMLDSTEPSVLRAGLERFGGRCVVNSVNYEDGDGPDSRYQRAM
                     KLIREHGATVVVMCIDEEGQARTAEWKVRVASRLIDDLTANWGMRTCDVIVDCLTFPI
                     STGQEETRRDALETIEAIRELKRRYPEVQTTLGVSNVSFGLNPAARQVLNSVFLHECV
                     QAGLDTAIVHASKILPMVRIPDEQRAVALDLIYDRRRPGYDPLQQLMGLFEGVTTSSS
                     KESRAAELAALPLFERLERRIVDGERNGLAEDLDAALGQRPALQIINDTLLSGMRTVG
                     ELFGSGQMQLPFVLQSAEVMKASV"
BASE COUNT          349 a          733 c          763 g          380 t
ORIGIN      
        1 tccggatagg tcaccgcgct agcctacggc tcccgggcgc cactggccgt gtcgcgatac
       61 tttgcgatcc ccgggatgcc cgatgtcgct cctctactct gcatctcatg gccttgtcat
      121 cgctgctcga cgttctggcg caacgtgtcc tggtcgccga cggggcgatg ggcacgatgt
      181 tgcagtccgt gcccttgagc ttagatgact tcgccgggct ggagggatgc aacgagatcc
      241 tcaacgtcac ccgtcccgat gtcgtccgcg ccgtgcaccg tgactacctg gaggcgggtg
      301 ccgacgcggt ggaatccaac accttcggcg ccaatctggc taaccttgcc gagtacggca
      361 tcggcgaccg gatccgggaa ctcgccgagg ctggtgccgc gctggcccgc gaggtggccg
      421 acgagttcat cgaagcagac cggcagcggt ttgtactcgg gtccgtcggt ccgggtacca
      481 agctgcccac cttgggtcac atttcgttca ccgagctgcg cgacgcctac gtcgagcagg
      541 tccgtggcct gctagccggc ggagtcgacg ccgtcctggt ggagaccagc caggacctgc
      601 tgcagtgcaa ggcagcggta atcgccgccc gccgcgcgat ggtcgccgag ggccgccacg
      661 tgccgatcat cacgcaggtc accgtggaga ccaccggcac gatgctgctc ggcaccgaga
      721 tcggcgctgc gctcaccgca ctcgaaccgc tgggaatcga cctgatcggg ctgaactgcg
      781 ctaccggccc agccgagatg agtgagcacc tgcggcaact ggccaagtat tcccgcatcc
      841 cgctgtcggt gatgcccaac gccggcctgc ccgaactcgg cacagcaggg gcggcctacc
      901 cgctgacccc cgatgagtta gccaccgcgc tggccggctt cgtcaccgag ttcggtgtcc
      961 ggttggtcgg tggttgctgc ggcacgaccc gggagcacat cgcggcggtg gtgcaggcgg
     1021 tgaccgacct gcaaccacgc cgccggcggc cgcgacccga acccggggtg tcctcgctct
     1081 actccgcggt gccgtttcgc caggacgcca gcgtattgat ggtcggtgag cggaccaacg
     1141 ccaacgggtc gaaggctttc cgcgaggcga tgctcgccgg gcggctcgat gactgcgtgc
     1201 agatcgctcg cgcgcagacc cgggatggcg cgcacctgat cgacctctgc gtggactacg
     1261 tcgggcgcga cggcgccgtc gatatggccg agttggctgg gcggttggcc accgcgtcga
     1321 cgctgccggt gatgctggac tccaccgagc cctcggtgtt gcgcgccggt ctggaacgct
     1381 tcggtgggcg gtgtgtggtc aactcggtga actacgagga cggtgacgga cccgactcgc
     1441 ggtaccagcg cgccatgaag ctgatccgcg aacacggcgc gactgtggtg gtgatgtgca
     1501 tcgacgagga ggggcaggcc cgcaccgcgg agtggaaggt gcgcgtggcg tcgcggctga
     1561 tcgatgatct gaccgcgaac tggggcatgc gcacctgtga cgtcatcgtc gactgcctca
     1621 ccttccccat ctccaccggc caggaggaga cacgtcgcga cgcgctggag accatcgagg
     1681 cgatccgcga gctcaagcga cgttacccag aggtgcagac cacgcttggg gtatccaatg
     1741 tgtcattcgg cctcaacccg gcggcccgtc aggtgctcaa ctcggtgttc ctgcacgagt
     1801 gcgtgcaggc cggattggac accgccatcg tgcacgcgtc gaagatcctt ccgatggtcc
     1861 ggatcccgga cgagcagcgg gccgtggcgc ttgatctaat ctacgaccgc cgtcggccgg
     1921 ggtatgaccc tctgcagcag ctgatggggc tattcgaggg cgtcacaacc tcctcgtcga
     1981 aggagtcccg agcggccgag ctcgcggcgc tgccgctgtt cgagcgattg gagcggcgga
     2041 tcgttgacgg ggagcgcaac gggctggccg aggacctgga tgccgccctc gggcagcggc
     2101 ccgcactaca gatcatcaac gacaccttgc tgtccggcat gcggaccgtg ggcgagctgt
     2161 tcggctcagg gcagatgcag ctgccgttcg tactgcagtc ggccgaggtg atgaaggcat
     2221 ctgtc
//
LOCUS       DASVXZ010000914         6325 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_977546, whole genome shotgun sequence.
ACCESSION   DASVXZ010000914 DASVXZ010000000
VERSION     DASVXZ010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6325
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977546"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VF788_19210"
     CDS             <1..259
                     /locus_tag="VF788_19210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936266.1"
                     /translation="PQRATGPMSSDTGAARSSAVLGDGQQHDRVFGGLQSMDRRRDWQ
                     EVALPAMPGIASAVQTNPAAQEGKTTLRLRHTYRVIRGRAG"
     gene            872..1690
                     /locus_tag="VF788_19215"
     CDS             872..1690
                     /locus_tag="VF788_19215"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipase family protein"
                     /protein_id="HEX8936267.1"
                     /translation="MGVSAFNQQANKYSLEHAYWLGRAARLAYGDESEILADTEKWGF
                     DQLVNFCGSHQMPFPLEDTQAYLAASDRMIVVAFRGTEPSQIRDWLSDSNTPVIPGPA
                     KKGLVHLGFSRALASVYPEIRDKVAEVRTNDQTLWFTGHSLGGALAMLAGATMHLEDP
                     KLLADGVYTFGQPRTCDRLFAAAHDTAFASRHFRFVNNNDIVAQAPPEPAFHHVNAMM
                     YFDASGRLHEKMSFASKLTDSFKGFTSDPFAPGTDGIRDHSMDTYVALIEKNLG"
     gene            1835..2897
                     /locus_tag="VF788_19220"
                     /pseudo
     CDS             1835..2897
                     /locus_tag="VF788_19220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612203.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(3481..4301)
                     /locus_tag="VF788_19225"
                     /pseudo
     CDS             complement(3481..4301)
                     /locus_tag="VF788_19225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010307206.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            4489..4728
                     /locus_tag="VF788_19230"
                     /pseudo
     CDS             4489..4728
                     /locus_tag="VF788_19230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
     gene            4806..5423
                     /locus_tag="VF788_19235"
     CDS             4806..5423
                     /locus_tag="VF788_19235"
                     /inference="COORDINATES: protein motif:HMM:NF025080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8936268.1"
                     /translation="MWDVSSWSKDLAVEIGGRDVINHAGAAALRLLADRTGLTGGLSR
                     ALARRGFAPVHDRGRVLADTAVLIADGGRVMSDLAVLRDQAELYGPIPSDPTLWRALE
                     EIGEPQRRKVFQQRAKTRAPVWSLIAQRHGRIPPSRVADRDLGKTIVIRMDASLVIAH
                     SDKQLAAGTYQGSWGHHPLMAWCENTVRVASAQAAQGQRRVQHRQ"
     gene            5434..5751
                     /locus_tag="VF788_19240"
     CDS             5434..5751
                     /locus_tag="VF788_19240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936269.1"
                     /translation="MLEEAIIQIPARYHRDLLITLDGAGASHGLINHITNLNASPWRT
                     VQYSTGWELGARERTALSRAPQHGWDHVLDTEGAPRDLAEAAVIELTALLREGPDGDQ
                     LAN"
     gene            5912..>6325
                     /locus_tag="VF788_19245"
     CDS             5912..>6325
                     /locus_tag="VF788_19245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936270.1"
                     /translation="MEDNIHTGKQTGLGHLPSTSIEINRAWCLAATIACDLLCWLRLL
                     CLHGTLASAEPKTLRYRLCCIPQPASCAANANTQSASPEPGPGQANSLPASARHSRCP
                     TNWMLINTNLPRPQHQPPDRGIRRSPNATVGPATRT"
BASE COUNT         1201 a         2075 c         1974 g         1075 t
ORIGIN      
        1 cccgcagcgc gcgaccgggc caatgagctc ggacactggc gcggcgcgca gttcagcggt
       61 gcttggcgac ggtcaacaac acgaccgcgt cttcggtggc ctgcaatcca tggaccgccg
      121 cagggactgg caggaggtcg ccctgccggc catgccaggc atcgcctccg ctgtgcagac
      181 gaacccggcc gcgcaggaag ggaagacgac tcttcgcttg agacacacct atcgggtgat
      241 ccgcggtcgc gcgggctgag cttgcggcga ggtcgttggc cagcctcggt cgacgatggc
      301 cagcccggca caccttagcc gaccacccct gcctcgcggc cggatcgtgt ctcgggctgg
      361 ctccggcgca ggtgatcact gcaacgtcct gccaatgagt ggacgtttgc aggcgcaggc
      421 ccctggcttc gagctagacc cacgtcggtc attcatgcag attgtgctcg acgaggacgg
      481 agccgggcgc gcgtcgcggc gtgcacgtgc cctgcaggat aagttcaagc gccgcttcgg
      541 cgagtacgac ccggaacgtg ccggttatgc gcagtcggca gcacgatcgg gtgcaaccgg
      601 gcgcagatcc gccaggcaca gcttgggtcg gctgtgcctc cagcggcctc tggcgtcagc
      661 atcacagcca agccattccc actggacccg gatgtctgtc tcactcacca gcacggcctt
      721 cccggaacgc cccgtgcccg ggtgttatcc ggtatcgtcg tgtcccatcg tcggggcatg
      781 ggatgggacg accggcgagc gggcgccccg atgtcggaat tatctgcaaa tcgattcgga
      841 ttgggcagaa aatcagcgaa aggacgatcg ggtgggtgtt tccgctttca atcaacaagc
      901 caataaatac tctttagagc atgcttactg gctcggcaga gctgcgaggc tggcctatgg
      961 agatgaatct gagatccttg cagacactga gaagtggggt tttgatcagc ttgtgaactt
     1021 ctgcgggtca catcaaatgc cgttcccgtt agaagacacc caggcgtatc tggcggccag
     1081 cgaccgaatg atcgttgtcg cgtttcgtgg cactgaacca tcgcagatcc gagactggct
     1141 atcggactca aatacacccg tgatccccgg acccgcgaaa aaaggacttg ttcatctggg
     1201 tttcagtcga gcactggcat cggtgtaccc agagattcgg gataaggttg ccgaagttcg
     1261 cacgaacgac cagaccttgt ggttcaccgg tcacagcctc ggcggtgcgc ttgctatgct
     1321 ggccggggcc acgatgcacc tcgaagaccc gaaactactt gccgacgggg tgtacacctt
     1381 cggccagccg cggacttgtg atcgtttatt cgctgccgcc cacgacacgg cgttcgcatc
     1441 tcgacacttc cgcttcgtca ataacaatga catcgtcgca caggcgccac ccgaacctgc
     1501 cttccaccac gtcaacgcca tgatgtactt cgacgcgagt ggaaggctgc acgagaaaat
     1561 gtcgtttgcg agcaaactga cagatagctt caagggcttc accagcgatc cgttcgcccc
     1621 aggtaccgac ggtatcaggg accattccat ggacacatac gtggcgctca tcgagaagaa
     1681 tctcggctag gactccaacc ctagttactt cgacctgaaa aaagtcagcg tgttgatcag
     1741 ctgcgagcgt gtgatgggcg agacgatgac cttgaccctt gggctagaag ggatcgaggt
     1801 catcgtgttc cgaacgatag gtgatcagct gtgtctgtgg gaggcggtcc tgccggcgga
     1861 gctgggggtg ttgccctgcg agctcactgg gtgaacgcgc tgctggagga ccccgcgttc
     1921 tccgcaccgt ttgtgccgtt ctttgatccg cggttgggtc ggccctcgac gccgatggag
     1981 acttacctgc ggatgatgtt cctggagttc cgctaccggc tgggctagga gagcttgtgc
     2041 cggaggtgag tgattcgatc acctggcggc ggttctgacg gattccgctg gatggtcgag
     2101 tcccgcatcc aaccacgttg atgaaactga ttacccgctg cggggaagct gcggtggccg
     2161 gatacaacga ggcgctgctg gagaaggcgg cgcaggccaa gctgctgcgc accacccggt
     2221 tgcgtgcgga caccacagtg gtcccggcgg atgtggcgta tccgaccgat tcgggcttgc
     2281 tcgccaaggc ggtccggcgg atcgcggtga ccgggcgagg agatccaggc cgcggggggc
     2341 gcgctgcgca ctcgcatgcg tgatcgcagc cgctccgcgg gcaagcgggc gcacgcgatc
     2401 gcggcgaagc tgcgcctgcg cggtgccgcg gcccgcgacg aggcccaggc cacggccgcc
     2461 acgctggccg cggccggcgg ccacgacgcg gtggcaggtc gacgccgggg ccgactccac
     2521 agggccctca acgacctgac acgcctgatc gaggcgagcc ggcagattgc cgcgcagacc
     2581 catcagcgcg tggctgggct cacccccgag ggagccactc agcgggtagc ctgcacgaac
     2641 ccgacgcccg gccgatcgcc aagggacgcc tcggtaagcc ggtcgagttc ggctacaaag
     2701 gtcaggtcct cgacaacgac gatggtgtcg tgctcgacca cagcgtgcac cagggcaacc
     2761 cacccgacgc cccacagttg gtccctgcca tcgagcgggt catccgccgc accagccgcc
     2821 ggccgcgcac cgtcaccacc gaccgcggct acggcgagaa acacgtcgag gatgcgctgc
     2881 acgacctcgg ggtacgcagc tactgtcgcc cgcccgcgtg tcactcggag tagcgggccg
     2941 cgccggcccg gccccggcct gctggcaacc tccggtcggc atcggccggg ccggccggcc
     3001 agctgacgaa cgacaagtcc tcggggctcc gccccgaacc ctggccactc ctcggagatc
     3061 cgctcagctt tccgcggctg ccgctttcgc tgcgtatccg tcaggtaagc cccagctgga
     3121 tgggctggga aaggtccctc cctccagcaa gtgccacagc cgtcatcaga ggaacgccgg
     3181 gagtcacctg ttttgattcc caagctcatg tcctcaatcc taggaagaac tcgcccacat
     3241 cgaatacgcg cccttaccgg tcgctgtaca gccatccgta cagctaagcc ggtcgacagc
     3301 caccggtgag gagcggcggc agccgacaga tttaatatcg atacggctga tcacgacttg
     3361 cacggcggga gccagacccg ccgtgcgagt cacaagacgg ggtcagtaac agtcaaactg
     3421 gggaccacct ctgaccacag ctggccgcag gtcaaggtct gggcatcata ggcaaataaa
     3481 tcagctcgtg atgaaggcga gtagatctgc gttgaactcc tgttcgtggg cgccggtcaa
     3541 cccgtgtggc gcgcccgggt agatcttgag cgtggcgttg ggcacaattt tcgatgactt
     3601 cagggccgag gcctggatcg gcacaatctg gtcgtcgtcg ccatgcagga tcagggtggg
     3661 acatcgatcc ttttgaggtc ctcagtcaga tcggtttccg agaaagcttt gacgcagtcg
     3721 taggcaccct tgatgccgac ggtcatcgac atcaaccaaa acgcgtcccg cgcgccctga
     3781 gagacgttcg acccgtcccg gttggccccg tagaacggaa aggccaggtc gcggtaaaac
     3841 tgcgaccgat cggccagaat ccccgcccgg atctggtcga acggctggat cggcaggcct
     3901 tcgggattgg cctcggtctt gagcatcagc ggtgggatcg cactcagcaa caccatcttg
     3961 gcgaccctgg aagtgccatg ccgaccgaca tagcgggtga cctcaccgcc accggtcgaa
     4021 tgtccgacca acacgacgtc ggtaaggtca agagaatcga ttaccacggc aaggtcgtct
     4081 gcgtagtggt ccaggtcatt gccctcccat ggctggctgg accgaccgcc gccgcgccga
     4141 tcatgcgcca ccgcccggaa gccgtgtgag gccacatagt aggccgagcc atcccacaca
     4201 tcggcggtca gcggccagcc atgactgaag acaacgggct ggccgctacc ccaatcctta
     4261 tagaagatct cggtgccatc ggtggtcgtg accgtgggca tggcgcactc ctgtccagag
     4321 ttggatgccg atcgatcaag atcggttaag tctgaccctg tcagaccggc ctacgacgct
     4381 gcgtccgcca gcgggttgac ttcgctcacc acgttcgggg ggccggcttg aacgcgtcgc
     4441 agcgcgggca tcccgccacg ccgaacgaac cgtagacaaa ctcgggctcc acgagtactc
     4501 gatgagctgc tgccctcggc ctgccacgtc accgagcagt acgcgaacaa cgccgtagaa
     4561 gctgatcatg ggcgcctgaa gtcccggctg cggccgatgc gtggtctgaa acggcttcgc
     4621 tcagcacgag tgatctgtac aggacacgca ttcgtccaga acatgcgccg tggtcacttc
     4681 gaactagccc tgagtattcg ccgcgatctt gtgttgggcg tgttttgaca gagaaagtgc
     4741 tcctggcctg ggagaatgag gttgtcgaag cctttcaccc agtatcgcca aggagcactt
     4801 ttcaggtgtg ggatgttagc tcatggtcga aggatctcgc ggtggagatc ggtggccgcg
     4861 acgtgatcaa tcatgccggg gcggcagcac tgcggctgct tgctgaccgc actggcttga
     4921 ccggtggatt gtcgcgggcg ttggcccgcc gcgggtttgc gccggtccat gatcggggcc
     4981 gggtactggc cgataccgcg gtgttgatcg ctgacggtgg ccgggtgatg tcggatttgg
     5041 ccgtgctgcg cgatcaggcc gagctgtacg ggccgatccc ctcggatccg acgctgtggc
     5101 gcgccctgga ggagatcggt gaaccgcagc ggcgcaaggt cttccagcag cgggccaaga
     5161 cccgcgcccc tgtgtggtcg ctgatcgccc agcggcacgg ccggattccg ccgtcacggg
     5221 tcgctgaccg tgacctgggt aagacgatcg tgatccggat ggacgcctcg ctggtgatcg
     5281 cccactccga caaacagctg gcagcaggaa cctatcaggg cagctggggt caccatccgt
     5341 tgatggcctg gtgtgagaac accgtgcgag tcgctagcgc tcaagctgcg caagggcagc
     5401 gccgggtcca acaccgtcag tgaccacatc gaggtgctcg aggaggccat catccagatc
     5461 ccggcccggt atcaccgcga cctgttgatc accctggacg gtgccggcgc ctcccacggc
     5521 ctcatcaacc acatcaccaa cctcaacgcc tcgccctgga gaacagtgca gtactccacc
     5581 ggatgggagc tgggcgcacg agaacgcacc gccctcagcc gcgcacccca gcacggctgg
     5641 gaccacgtgc tcgacaccga aggtgcaccc cgcgacctgg ctgaggccgc agtgatcgag
     5701 ctcaccgccc tgctccggga aggaccagac ggtgaccagc tggcgaactg acccaagacc
     5761 tgcgcatcat cacccgccgc gagaaacccc accccggcgc acaactggct ctgttcgaac
     5821 agatcgatgg gtgcgctagc agctcctggc caccaacaca cccggcagga ccacgcagtt
     5881 cctcgaagcc cgccaccgat cacacgcccg cgtggaagac aacattcaca ccggcaagca
     5941 aaccggcctc ggacacctac cctccacctc gatcgagatc aaccgagcct ggtgcctggc
     6001 cgcgaccatc gcctgcgacc tgctgtgctg gctacggctg ctctgcctgc atggaacact
     6061 ggccagcgcc gaaccgaaga ccctgcgcta ccggctctgc tgcataccgc agcccgcatc
     6121 gtgcgcggcc aacgcaaaca cacaatccgc atccccggaa cctggccctg ggcaagccaa
     6181 ctcgctacct gcctccgcgc gacattcgcg ctgccccacc aactggatgt tgatcaacac
     6241 aaacctgccc cgaccacagc accaaccccc ggaccgtgga atccggcgct cacccaacgc
     6301 gacagtcggg ccagcaaccc gaaca
//
LOCUS       DASVXZ010000915         5993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_797692, whole genome shotgun sequence.
ACCESSION   DASVXZ010000915 DASVXZ010000000
VERSION     DASVXZ010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5993
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_797692"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>5993)
                     /locus_tag="VF788_19250"
     CDS             complement(<1..>5993)
                     /locus_tag="VF788_19250"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEX8936271.1"
                     /translation="QTRTPLPYDRPPHQAHRSESTASLDVQLDWQGTARLQQVARRQG
                     LTVNTLVQGAWTVLLARYSGQQDVVFGTTVSGRPAELAGVESMVGMFINTIPTRARLD
                     ETQDAASWLRELQTAQIDSRRFDFCSLAQIQTYSELPAGSALFESMVVFENYPFDSAV
                     VTDAGLHIHQVQLRETTNYPLTLLAFLGEQLGLRLAYDPHLFDATSIERVVGHLVVLL
                     TGIATDPDQPLAQLSVLSTTERDQLLVEWNNTYTQLPEVTLPELFAEQVTRTPDAIAV
                     VCGSVRLTYQVLDERANQLAHRLISLGVGREQPVGVLLERSVDFVVSELAVVKAGGAY
                     LPLDLRAPVSRMGQLLTEARVSVLITDEAWFPTASDAHSEHIVLVSDPSLTDALSSTP
                     AIAMDLEQLAYVMYTSGSTGVPKGVAVRHRDVVALALSRCFAGGAHERVLLHSPAAFD
                     ASTYELWVPLLHGGQVVVAPPVEVDAELLRRMVNDHALTGLWLTAGLFRLVAQEAPEC
                     LAGIHEVWTGGDVVPAAAVRRVQGACPDLVVVDGYGPTETTTFASAYRMAPDRPAPEV
                     VPIGYPLDNVRVYVLDSRLRPVPVGVTGELYIAGLGLARGYLNRAGLTATRFVANPYG
                     TAGERMYRTGDLARWTSHGELFYLGRADEQVKIRGFRVEPDEIAAVLVAHPEVREAAV
                     IAREVQPGVKRLVAYLVPTSATDPAPADLRRHLAETLPDYMVPALFVTLDELPLGPTG
                     KVDRKALPAPDHIAEPVSEYVAPRTPAEHTLAQIWADVLGVERVGIHDNFFELGGDSI
                     LSIQVMSRARVAFEVEFSPRVLFVDPTVAGLAAVVAESTVSALPAIPVADRVGELPLS
                     FAQQRLWFLDQFAPGGSGYVTAFAVRLRGELDLDALAGTLDALVTRHESLRTTFETVE
                     GRGVQVVHPPASVFLPVWDLSSLAPAEQQQELHRVLAAQARQEFDLARGPLLRVEVTR
                     LGTAEHVPSEHVLSVAMHHIITDGWSTGVFVAELGALYNAAVRGHDPQLPVLPVQYVD
                     YALWQRELLSGAVLDTALDYWREQLAGVPVLELPTDRPRPAVLTVTGAVHEFVVPAQI
                     TSRLKELSQRQDGTLFMSLVAACQVLFARYSGQDDVAVGTVVSGRERAELEGLIGFFV
                     NTLVLRSQVIHEHTFRQFLTEVRETVLDAFVHQQLPFERLVDELAPVRDTSRTPLFQA
                     MVILQNTPGHTPELTGLDVSGVELPMATAQFDLTVQFQETGDVLAGALTYNTDLFDAA
                     TIERMTGHLLVLLGGIAADPDRPLSQLPLLASAERDQLLVGWNDTRRPVSAATLPELF
                     AAQVAMHPQALALRCGPVSLSYAELDERANRLAHWLITRGVGPERLVAVALPRSVELI
                     VALLAVTKAGAGYLPIDPDHPHARLAFMLTDAAPDVVLSVAAVARQLPEVPGTAVALL
                     DDPLVASELASMPTHTPTDADRLRPLRLAHPAYLIYTSGSTGQPKAVLVTHAGLSNFS
                     AAEIEHYQLNPGDRVLAMSSPSFDASILELGISLLAGAVWVLPATSEPLAGENLHTVL
                     AQEQITHALIPPAALATIPAEIAATGLPEWTTVIVGGDACDAELVTRWAPGRRMINSY
                     GPTETTVVASWSAPLRPGPHRPLIGSPIPNTRIYLLDHLMRPVPTGVTGELYIAGIGL
                     ARGYLNRAGLTAARFVANPFGEPGERMYRSGDLARWRPNGELEYQGRADDQVKIRGFR
                     IELGEIEAALQSHPQVTQAVVTVREDQPGMKRLVGYLVPVTGNAPTPADLRNHAAQTL
                     PDYMVPGIYVILDELPLGPTGKLDRKALPPPDQITEPVSEYLAPSTSTEHTLTQIWAD
                     VLGVDRVGVHDNFFELGGDSILSIQVVSQARRAGIRVSTKDIFFHQTIAELAASVPMR
                     SGEAEAGSELAVGEVVAGPAPLTPIQHWFFATYGALAYFNQSFVIELAEDLDQHALST
                     ALDALVAHHPELRMRFSQSEGQWCQDIALIKGAVLERCDL"
BASE COUNT         1110 a         1987 c         1929 g          967 t
ORIGIN      
        1 aggtcacagc gttccaatac cgcacctttg ataagtgcga tgtcctggca ccattggccc
       61 tcactctggg agaaacgcat ccgcaattcc gggtgatgtg ctaccagcgc atccaacgcg
      121 gttgataatg cgtgctgatc aaggtcttcg gccaactcga taacgaaaga ttggttgaag
      181 tacgccaatg ccccgtaggt ggcgaagaac cagtgctgga tcggggtcag cggtgccggg
      241 ccggcaacca cctctcccac cgccagctcg gatccggctt ctgcttcacc gcttctcatg
      301 ggcacgcttg ccgcgagttc agcgatggtc tggtggaaga aaatgtcctt ggtgctcacc
      361 cggatcccgg cccgccgggc ctgggagacg acctgaatgc tgaggatgga atccccaccg
      421 agttcgaaga agttgtcgtg gacgccgacc cggtcaacgc cgagtacgtc agcccagatt
      481 tgggtgagag tgtgttcggt cgaggtgctg ggggcgaggt attccgaaac cggttcggtg
      541 atctggtcgg ggggcggcaa tgctttacgg tcaagtttcc cggtgggtcc cagggggagt
      601 tcgtcgagaa tgacgtaaat cccggggacc atgtagtcgg gcagggtctg ggcggcgtgg
      661 ttgcggaggt cagcgggggt tggcgcattc ccggtaacgg gaaccaggta gccgaccagc
      721 cgtttcatcc ctggctggtc ttcgcggacg gtcaccacag cctgggtcac ctgtggatgg
      781 ctctgcaacg cggcttcgat ttcgcccagc tcgatgcgga aaccgcggat cttgacctga
      841 tcgtcggccc ggccttgata ttccagttcg ccgtttggcc gccagcgggc gaggtcgccg
      901 ctgcggtaca tccgctcacc tggctcgccg aagggattgg ccacgaatcg ggccgcggtc
      961 aatccggccc gattcagata gccacgggcc agaccgatcc cggcgatata caactccccg
     1021 gtgaccccgg tcgggaccgg ccgcatcagg tgatccagca ggtagatgcg ggtattgggg
     1081 atcggagacc cgatgagtgg gcgatgcggg ccggggcgca gcggtgcgct ccagctggct
     1141 accacggtgg tctccgtcgg cccgtaggag ttgatcatcc ggcggcccgg ggcccaccgg
     1201 gtgaccagtt ccgcgtcgca agcgtcccca cccacgatca cggtggtcca ctcgggcagc
     1261 ccggtcgcgg cgatctcggc ggggatcgtg gccagcgccg cgggcgggat cagagcgtgg
     1321 gtgatctgct cttgggccag gacggtgtgc aggttctccc cggccagcgg ttcggaggta
     1381 gcgggcagca cccacaccgc gccggccagc agggagatcc ccagttccag aatggacgca
     1441 tcgaagctgg gtgaggacat cgccaggacc cggtctcccg ggttgagctg gtagtgctcg
     1501 atctccgctg cggagaagtt gctcagcccg gcatgagtca ccagcacggc tttcggttgc
     1561 ccggtggacc cggaggtgta gatcaggtaa gccggatggg ccaggcgcag cgggcggagc
     1621 cgatcggcat cggtcggagt atgggtgggc atgctggcca gctcactggc caccagtggg
     1681 tcatccagca gcgccacagc tgtccccggc acctctggca actgccgcgc caccgcagca
     1741 acactgagca ccacgtccgg agcagcgtcg gtgagcatga acgcgagccg ggcgtgcgga
     1801 tggtccggat cgatgggcag ataccccgca cccgccttgg tcactgccag caatgccacg
     1861 atcagctcca ccgaccgagg cagcgccacc gcgaccagcc gctccgggcc caccccacgg
     1921 gtgatcagcc aatgcgccag gcggttggct cgctcatcca gctcggcata tgacaggctg
     1981 accggtccac accgcagcgc cagcgcctgc gggtgcatgg ccacctgggc agcgaagagc
     2041 tccggcaggg tcgccgccga tactggccga cgagtgtcat tccaccccac cagcagctga
     2101 tcccgctcag cactggccaa caacggtagc tgggacagtg gccgatccgg atcagctgcg
     2161 attcccccca gcagcaccag cagatgaccc gtcatccgct cgatagtggc cgcgtcgaac
     2221 agatcggtgt tgtaggtcag tgcgccggcc aggacatcac cggtttcctg gaattgcacg
     2281 gtcaggtcga attgcgcggt cgccattggc agttccacgc cagagacgtc cagcccggtc
     2341 agctccgggg tatgcccggg agtgttctgc aagatgacca tggcctggaa cagcggggtc
     2401 cggctggtgt cccgtaccgg ggccagctca tccaccaaac gttcgaaggg cagctgctgg
     2461 tggacgaagg cgtccagcac cgtctcccgg acctcggtca ggaactgccg gaaagtgtgc
     2521 tcatggatca cctgggaacg cagcaccagg gtgttcacga agaacccgat caatccttcc
     2581 agctcggccc gttcccgacc cgacacgacc gtgcccaccg cgacgtcgtc ctgcccggag
     2641 tagcgggcga acagcacctg gcacgcggcc accaaggaca tgaacagggt gccgtcctgg
     2701 cgttggctga gttctttcag ccggctggtg atctgggcgg ggaccacgaa ctcgtgcacg
     2761 gcaccggtga cggtcagcac cgcggggcgg ggccggtcgg tgggcaattc caggaccgga
     2821 accccggcca gttgctcgcg ccagtagtcc agcgcggtgt ccagcaccgc acccgagagc
     2881 agctcccgtt gccacagcgc gtaatcgaca tactgcaccg gcaacaccgg caactgtggg
     2941 tcgtggcccc tgaccgcggc gttgtagagc gcgcccaact cggctacaaa cacgcccgtc
     3001 gaccagccgt cggtgatgat gtgatgcatc gccacgctga gcacatgttc gctgggaaca
     3061 tgctcggcgg tgcccaggcg cgtcacctcc acccgcaaca gcggcccgcg ggccagatcg
     3121 aattcctgcc tggcctgcgc ggccagcacc cggtgcagtt cctgctgctg ctcagccgga
     3181 gccagcgacg acagatccca caccggcagg aataccgacg cgggtgggtg cacgacctgc
     3241 acaccccgcc cctctacggt ctcgaaggtg gtgcgcagcg actcgtgccg ggtcaccagc
     3301 gcatcgagag tcccggcgag cgcgtcgagg tccaattcgc cgcgcagccg caccgcgaat
     3361 gcggtgacat accccgaccc acccggggcg aactgatcca ggaaccacaa ccgttgctgc
     3421 gcgaacgaca acggcaactc gcccacccga tcggccaccg ggatcgccgg caacgcggac
     3481 accgtcgatt ccgctaccac tgcggccagc cctgccaccg tagggtcaac gaacaacact
     3541 cgcggggaga actccacctc gaacgccacc cgcgcccgag acatcacctg aatactcagg
     3601 atcgagtccc cacccagctc aaagaaatta tcgtggattc cgactcgttc cacgcctagt
     3661 acgtctgccc agatttgggc cagggtgtgt tctgccgggg tacgcggggc gacgtattcc
     3721 gagaccggtt cggcgatgtg gtcgggggcg ggcaatgcct tccgatccac cttccccgtc
     3781 ggccccagtg gcaactcatc aagcgtcacg aacaatgccg gcaccatgta atccggcaga
     3841 gtttcggcga ggtgacgacg gaggtccgcg ggagcggggt cggtggccga agtggggacc
     3901 aggtaggcga caagtcgttt cacaccgggc tggacctcac gagcgatgac ggccgcctcc
     3961 cgcacctcag ggtgggcaac cagcactgcc gcgatctcat cgggttcgac ccggaacccg
     4021 cggatcttca cctgctcatc ggcccggccc agatagaaca gttccccatg gctggtccag
     4081 cgggccaggt cccctgtgcg gtacatccgt tcacccgcgg tgccgtaggg gttggccacg
     4141 aaccgagttg cggtcaatcc cgcccggttc agataaccgc gagccaaacc gagcccggcg
     4201 atgtagagct ccccggtcac ccccaccgga acagggcgca accggctatc cagcacgtag
     4261 acgcgaacgt tgtccaacgg gtaaccgatc ggcaccacct cgggcgccgg ccggtccggc
     4321 gccatccggt acgcactggc gaacgtcgtg gtctccgttg gcccgtagcc atccaccacg
     4381 accaagtccg ggcaggctcc ctggacccgt cgcaccgcgg ccgctggtac cacatcgcca
     4441 ccggtccaca cctcatgaat ccccgctagg cactccgggg cttcctgggc gaccagccgg
     4501 aacaacccag cggtcagcca cagcccggtc agcgcatgat cgttgaccat cctgcgcaac
     4561 aactcagcgt ccacctcgac cggcggcgcc accacgacct gaccgccgtg cagcaagggc
     4621 acccacaact cataggtgga ggcatcgaac gccgccggtg aatgcaggag cacccgctcg
     4681 tgcgcgccac cagcaaagca ccgggaaagg gccaacgcga ccacgtctcg atgccggacc
     4741 gcgacacctt tcggtacacc tgtcgagcca gaggtgtaca tgacgtacgc caattgctcc
     4801 aggtccatgg cgatagctgg ggtagaactc agcgcatccg ttaatgaggg atcactcacc
     4861 agtacgatat gctcggagtg ggcatcacta gctgtgggga accacgcctc atcagtaatc
     4921 agcaccgata ctcgggcctc ggtcagcaac tgccccatcc ggctcaccgg agcacgcagg
     4981 tccagcggta gatatgcgcc accggctttc accaccgcca actcggagac aacaaagtcc
     5041 accgagcgct ccaacagcac accgaccggc tgttcccggc ccacgcccag actgatcagc
     5101 cggtgggcca gctggttggc ccgctcatcc aatacctgat aggtcagccg cacgctccca
     5161 cacacgactg caatcgcatc cggcgtgcgg gtgacctgct cggcgaagag ctcgggcagg
     5221 gtcacctcag gtagctgagt ataagtgttg ttccattcca ccagtagttg atcgcgctcg
     5281 gtggtgctca gcaccgacag ctgcgcgaga ggttggtcgg ggtcggtggc gatccccgtc
     5341 aggagcacca ccagatgtcc cacgacccgt tcgatgctgg tggcatcgaa cagatggggg
     5401 tcataggcga gtcgcaggcc caactgctca ccgaggaagg cgagcagggt gagagggtag
     5461 ttagtggttt ccctgagctg gacctggtga atgtgcaggc cggcgtcggt gactactgcg
     5521 gagtcgaagg gataattctc gaacaccacc atgctctcga acagggcact tccggctgga
     5581 agctcactgt aggtctggat ttgggctagg gagcagaagt cgaaccggcg ggagtcgatc
     5641 tgcgcggttt gcagctcacg cagccaggag gccgcgtcct gggtctcatc gaggcgcgcg
     5701 cgggtgggaa tggtgttgat gaacatgccc accatcgatt ccaccccggc cagctcagcc
     5761 ggccgcccgg acacggtggt cccgaacacc acgtcctgtt ggccgctgta gcgggcaagc
     5821 agcaccgtcc aggcaccctg gaccagggtg ttcactgtca acccctggcg cctggccacc
     5881 tgctgtaacc gggccgtgcc ctgccaatcg agctgaacgt ccagtgatgc ggtggactcc
     5941 gagcggtgtg cctggtgggg tggccggtca tagggcaggg gggtgcgggt ctg
//
LOCUS       DASVXZ010000916         1762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_977818, whole genome shotgun sequence.
ACCESSION   DASVXZ010000916 DASVXZ010000000
VERSION     DASVXZ010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977818"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..298
                     /locus_tag="VF788_19255"
     CDS             47..298
                     /locus_tag="VF788_19255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936272.1"
                     /translation="MSEPDPAAAETFNPWSVVNLVFHHLAAKGLHPVLGEAGDPARPA
                     AELLRALGIEPGPERSEHTRRDISQQLADLRAAVLGERP"
     gene            527..>1762
                     /locus_tag="VF788_19260"
     CDS             527..>1762
                     /locus_tag="VF788_19260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013226169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase"
                     /protein_id="HEX8936273.1"
                     /translation="MSRQSVAKAHQKIQELSWEPMYHTPYRKYGTDYTFRKAQKRDPL
                     KQVLRSYFPMQEEKDHRVYGASDGAIRGNMFRQVQERWLEWQKLFLSIIPLPEISAAR
                     SMPMLFHTVPNPELHNGQAIQMIDEVRHSTIQQNLKRLYMNNYIDPAGFNTSLRNFHN
                     DYCGTIGRQFAEGFITGDAITAASIYLTIVAETAFTNTLFVAMPAEAAANGDYLLPTV
                     FHSVQSDESRHISNGYATLLMALSDESNHQLLERDLRYAWWNNHRVVDAAIGTFIEYG
                     TKDRRKERESYAEMWRRWIYDDYYRSYLVPLEKYGLVIPHDLIEEAWNQIWNKGYVHE
                     VAQFFATGWLANYWRIDGMTDEDFEWFEYKYPGWYDKYGKWWENYNRLSLPNGHHPIV
                     AENVDYVYPHRCWTCMVPCL"
BASE COUNT          370 a          556 c          551 g          285 t
ORIGIN      
        1 gggtgtgggc gaaagggtgc ggtggcacgg agatgaggcg gcctcgatga gcgagcccga
       61 tccggccgca gccgaaacat tcaacccgtg gagcgtcgtc aacctggtgt tccaccatct
      121 ggctgcgaag ggtttgcacc ccgtcctcgg cgaggcagga gacccggcgc ggccggcagc
      181 cgagttgctg cgagcgctcg gtatcgagcc cggcccggag cggtccgagc acacgaggcg
      241 cgacatcagc cagcaactgg ccgatttgcg agcggccgtg ctcggtgagc gcccttaacc
      301 cgctctcggc ctcttgacca gcaatgacgt cggagggagc aggcaggcac tgatctattt
      361 gtctcatgtt gagacccccg gccaatccgg cgtgaggtgt gatttcaaca cacggcagcg
      421 cgcgacaacg acttacgcca acgaggcgag caacaaacct gagcacgtga tcgacgctga
      481 cggctagcgc cgcagcggag tgcgagtaca cgggtgagga gtgaccatga gtcgccagag
      541 cgtggcaaag gctcaccaga agatccagga actgtcctgg gaaccgatgt atcacacgcc
      601 gtaccgcaag tacgggaccg actacacctt ccgtaaggcg cagaagaggg atccgctcaa
      661 gcaagttctg cggtcatact tccccatgca ggaggagaaa gaccaccggg tttacggggc
      721 ctccgacggc gcgatccgcg gcaacatgtt ccgccaggta caggagcgct ggctggagtg
      781 gcagaagctg ttcctgtcca tcattccgct tcctgagatc tcggcggccc ggtccatgcc
      841 gatgctgttc cacacggtgc ccaacccgga gctgcacaac ggccaggcca tccagatgat
      901 cgacgaggtc aggcactcga cgatccagca gaacctcaag cgcctgtaca tgaacaacta
      961 catcgacccg gcgggcttca acacgagcct gcgcaacttc cacaacgact actgcggcac
     1021 gatcggccgg cagttcgccg aaggcttcat caccggtgat gccatcaccg cggcgagcat
     1081 ctacctgacg atcgtcgccg agaccgcgtt caccaacacg ctgttcgtcg ccatgcccgc
     1141 cgaggcggca gccaacggtg actacctgct gccgaccgtg ttccactcgg tgcagtctga
     1201 cgagtcgcgg cacatcagca atggctacgc caccctgctg atggccctgt ccgatgagag
     1261 caatcaccag ctgctcgagc gcgacctgcg gtacgcgtgg tggaacaacc accgcgtcgt
     1321 cgacgcggcg atcggcacct tcatcgagta cggcacgaag gaccgccgca aggagcggga
     1381 aagctacgcc gagatgtggc ggcggtggat ctatgacgac tactaccgca gctatctggt
     1441 accgctggag aagtacgggc tggtgatccc gcacgacctc atcgaggaag cctggaacca
     1501 gatctggaac aagggctacg tccacgaggt tgcgcagttc ttcgccactg gttggctggc
     1561 caactactgg cggatcgacg gcatgaccga cgaggacttc gagtggttcg agtacaagta
     1621 cccgggctgg tatgacaagt acggcaagtg gtgggagaac tacaaccgcc tgtccctgcc
     1681 gaatggccac cacccgatcg tcgccgagaa cgtcgactat gtgtacccgc accgttgctg
     1741 gacctgcatg gtgccgtgcc tg
//
LOCUS       DASVXZ010000917         4170 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_798025, whole genome shotgun sequence.
ACCESSION   DASVXZ010000917 DASVXZ010000000
VERSION     DASVXZ010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_798025"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..468
                     /locus_tag="VF788_19265"
                     /pseudo
     CDS             199..468
                     /locus_tag="VF788_19265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677563.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiator"
     gene            complement(612..1778)
                     /locus_tag="VF788_19270"
     CDS             complement(612..1778)
                     /locus_tag="VF788_19270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004562189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX8936274.1"
                     /translation="MTAPSNRPDLPTPRPLSNWTIAAGALIVLTVAAVVSFLLLRRYG
                     GQGAQIQLDAIRTAGTLVIGTGGAVALLLTARRQRYTELTLVHTDRDATERRITELYT
                     KAAELLGSGQVSVRMAGLYALERLAHSTVEHRQSIVDVICVHLRMPYTPPRSYRSPGP
                     ARRRRARTLTDRPPHATPTYQGSRQENAQQEQQVRLTARYILLRNLRVAAQRRQHWWH
                     RTPPPAAPAWPGMRLTLAGALLPDFSLAECQLGNANFTGAQFTGVAYFMGAQFTGVAD
                     FAEAQFTGMAYFMGAQFTGVAYFGDAQFTSGVDFGDTRIASAAGPDFGDARVASTAGP
                     GSVWPPGWTTRPAKPDNGEDPAFLYLTRVEEAQSLVLDPGRATPISSKLWVRKG"
     gene            complement(1972..2403)
                     /locus_tag="VF788_19275"
     CDS             complement(1972..2403)
                     /locus_tag="VF788_19275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936275.1"
                     /translation="MDTDTKEVPVIGIHITKSGMTSIEIKNFFLRPPTIIGFLCMGPY
                     LLFDEDSEDSDVERLDGKKLPATLRPNRTMDWAYRIKSAGLAGGWRAPEGSPLVTDLP
                     GIYDRIRKSKIEVTLGNGRILKRMGLTYGAMISLGEYKKQR"
     gene            2959..4152
                     /locus_tag="VF788_19280"
     CDS             2959..4152
                     /locus_tag="VF788_19280"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8936276.1"
                     /translation="MDVDGARPIGRRLRQIRQARRKSLRVVAGLAGISSSHLHRIETG
                     ARPLDSLTLILALADALQVAPSELVTLPVPAPGNGPTDGAINAVRLALLAVGHNRPGG
                     QAQPVEAIRERVTAVVDAYCRCDRDGVVGAMLPGLIRDLHTSIAAGRDVAELLDLAVL
                     LHSHATVGWLRVVGGSLDLRSQAAELARRAAAERDTPQALGLAAWGGMYVLVMAGAVD
                     LARAELDTVKVPTTTPESTQLAGMLALCRAFLAMAESRPGDVTAPLELAADLAQRTGE
                     VNAYGLGFGPQEVGQWRARTAMEVADHEQAARVAEGLAVQTHPLRSRQADYWVTYGRA
                     LARLRGRRDDSVRALRHAELILPHYVQRDPLVRDVLAELLTHARRDAVGRELRGMAYR
                     AGLPV"
BASE COUNT          737 a         1311 c         1376 g          746 t
ORIGIN      
        1 ccgcacatgt ccgtacaagg tggggcggga tacgggggac ggcttcgcgg accgtcagtg
       61 cgtggtcgcc gggcggacca ccttcgcaga tgagcgattt ccgatgttcg acagataacc
      121 gacatgacta aggcaagtga gatctttatc taagcagttc agagcacacg ctcaagcagt
      181 attaagaaat tgatggtgta cctgaccaaa accatcggcc aggcagcggg actcaacgag
      241 cacgccaccg acgcccaacg agaacacatc caccggctgc acgccgaact ccgcgtcacg
      301 ccctgctctc ctcggtgtcc gggatggcta ctttatggca tccagcccag aggtgcccgg
      361 tactctatga cacccgggcg gtgcaaaggc aaagcccacc agatcgaaca tctcggcatc
      421 gccggccgcc gcgtcctcgt ctcccgcaaa tggtcaaaca aaaccctcga cgtatcacta
      481 tgtaatacat ccacccgaat agcccagtgc cggtatccgc agatcagtca ccggacggca
      541 gtgcaagcgg tagcggtgat cacctgacct ggttggtcgg gttcgaagcg gccacctgcg
      601 aggaacccag atcacccctt acgtacccat aacttcgagc ttatgggcgt cgcacggcct
      661 ggatcaagta ccagagattg agcctcctcc acccgcgtca ggtataggaa ggcggggtct
      721 tccccgttat ctggcttagc gggtcgggtc gtccagcccg gcggccacac agagcccggc
      781 ccagcggtcg aggccactcg ggcgtccccg aagtccggcc cagcggccga ggctattcgg
      841 gtatccccga agtcgacgcc gctggtgaac tgagcgtccc cgaagtaggc gacgccggtg
      901 aactgggcgc ccatgaagta cgccatgccg gtgaactggg cctccgcgaa gtcggccacg
      961 ccagtgaact gggcgcccat gaagtaggcc acgccggtga actgggcgcc agtgaagttg
     1021 gcgttaccga gctgacactc cgccagggag aagtccggca gaagcgcccc ggcgagggtc
     1081 agccgcatcc cgggccaggc cggggctgcg ggcggtggtg tccgatgcca ccagtgttgg
     1141 cggcgctggg cggcgacgcg caggttgcgc aacaggatgt accgggcggt tagccgcacc
     1201 tgctgctcct gctgggcatt ctcttgccgc gacccctggt atgtgggtgt ggcgtgcggc
     1261 ggccgatcgg tgagtgttcg cgctcggcgg cgccgcgcgg gccctggact gcgataagac
     1321 cgtggcggcg tgtaaggcat gcgcaggtgg acgcagatca catcgacaat ggattggcga
     1381 tgctcgacgg tgctgtgcgc caagcgctct agggcgtaca ggccggccat ccgcaccgag
     1441 acctggccgg agccgagcag ttcggcggcc ttggtgtaca gctcagtgat gcgtcgctcg
     1501 gtggcgtcgc ggtcggtgtg caccagggtt aactcggtgt agcgctgccg gcgggcggtc
     1561 agcagcagcg ccaccgcccc gccggtgccg atcaccagag tccctgcggt gcggatcgcg
     1621 tcgagctgga tctgcgctcc ctgacccccg tagcgacgta atagtagaaa tgagaccact
     1681 gccgcgacag tgagcacaat tagtgcccct gctgcgatgg tccagtttga caacggtcgc
     1741 ggcgtgggta gatcgggccg gttgctgggt gcggtcacac ccagatcatc gcccgctggc
     1801 cggaagccat cacatagtcg ggtatgccga gttgatcgca accgtcatat ctggcgggca
     1861 aggtgcgccg cccttagccc ttcgcagccg acttgcatca aggcctccca ccccgagcaa
     1921 cccggcgagt gccttgagaa gttagcgggt cagtcgaact cgccgcgttg atcacctctg
     1981 cttcttgtac tcccctagcg aaatcatggc cccgtacgtc aggcccatgc gcttaaggat
     2041 gcgaccgttc ccgagcgtta cttcgatctt cgactttctg atgcggtcgt aaattcccgg
     2101 gagatcggtt actaggggtg acccctcggg cgcgcgccat cccccggcga gccctgccga
     2161 ctttattcgg taggcccaat ccatcgtcct gttaggccgg agtgttgccg ggagcttctt
     2221 tccgtccagc ctctccacat cggagtcctc ggagtcctcg tcaaacagga gatacggccc
     2281 catacagagg aatccgataa tagtaggagg ccgcagaaag aagttcttaa tctcaatgct
     2341 ggtcattccg cttttggtta tatgaattcc aatgacaggt acttccttcg tgtccgtgtc
     2401 caccttcagt ctgttattag ttactgtgcc cgcttcataa gatacgcgca cgcgaacgcc
     2461 tgccctgcgg taagtcttaa gagcgagaaa aaacgaggcc agagagatta gcatcgcgaa
     2521 caggacgatt gctggtgtcg cgcggaccag ccactcaggt gctagaaaca cacaccagag
     2581 gataacaaat tattttttat tgcgtgagtg ttattgcgac tgctaaagct gcattggtac
     2641 cgagggccaa ggcccccacc cgaggagcgg ataggggcct catcgggtca gttcagccga
     2701 actcaccgtc ccgcactccg gcggtaaacg cggaccactg caccgcggtg aatctcagca
     2761 ccgagccggg ggttcttgct gtcccgcacg acgcggtggc cgtctaggtc ggccatctat
     2821 acaggcgaag tgatcacctg cgctcggcgg ggagggggag cagtagcctg gagtcacctc
     2881 ctcaccgagg tgtccgcccc ggggtagctc cccggggcat cggcgaagga gatcacctcg
     2941 gcgatggagt ggtgctcggt ggacgttgac ggcgcgcgcc cgatcggccg gcggctgcgt
     3001 cagatccgcc aggcgcggcg taaatcgttg cgcgtggtcg cggggctggc cgggatcagc
     3061 tcctctcatt tgcaccggat cgagactggg gcgcggccgc tagacagctt gacgttgatc
     3121 ctggcactgg ccgatgcgct tcaggtcgcg ccttcggaac tggtcacgct gcctgtaccc
     3181 gcgcccggca acggtccgac tgatggtgcg atcaacgcgg tgcggctcgc gctgctggcg
     3241 gtcggtcaca atcgcccggg cgggcaagct caacctgtcg aggccatacg ggaacgggtt
     3301 acggctgtcg tggacgccta ctgccgctgc gaccgcgatg gcgtggtcgg tgccatgctg
     3361 ccagggctga tccgcgacct gcacacctcg atcgcggcag ggcgcgacgt tgctgagttg
     3421 ctcgatctgg cggtgctgct gcactcccac gcgaccgtcg ggtggctacg ggtggtcggg
     3481 ggatccctgg atttgcgctc gcaggccgcc gagctggcca ggcgtgcggc ggccgagcgg
     3541 gacacaccgc aagcgttggg tctcgccgcg tggggaggca tgtacgtgct cgtgatggca
     3601 ggggcggtcg acctcgcgcg agccgagttg gacaccgtca aggttcctac caccactcca
     3661 gaatcgacac agttggccgg gatgctggct ctgtgccggg cgttcctggc catggccgaa
     3721 agtcgtcccg gggacgtgac cgccccgcta gagctggccg ccgacctggc gcagcgcacc
     3781 ggggaggtta acgcctacgg gctcggcttc ggtccgcaag aagtcggcca gtggcgggca
     3841 cgcaccgcga tggaggtggc tgatcacgaa caggcggctc gggtcgctga gggcttggcg
     3901 gtccagactc acccgctgcg ctcgcggcag gcggactact gggtcaccta tgggcgagcg
     3961 ctggcgcgac tgcggggacg ccgtgacgat tcggtgcggg cattgcgtca cgcggaactg
     4021 atcctgccgc actatgtaca gcgcgacccc ctcgtccggg acgtgctcgc cgagctgctc
     4081 acgcacgctc gccgggacgc agtcggccgg gagctgcgag ggatggccta ccgggccggc
     4141 ctgccggtgt aacccatccg ggtgtccgtt
//
LOCUS       DASVXZ010000918         2135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1053272, whole genome shotgun sequence.
ACCESSION   DASVXZ010000918 DASVXZ010000000
VERSION     DASVXZ010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053272"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..1408
                     /locus_tag="VF788_19285"
     CDS             233..1408
                     /locus_tag="VF788_19285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014868656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEX8936277.1"
                     /translation="MPAPSSSPIHPVLAELTAAADARRLSGAGLLAALGQVPDPRKRR
                     GVRHSITTILALAVCAVLAGCHSFTAIGEWAANASGQILAVLEVGGYPPCESTIRRTL
                     QRLDGDELDSAVGGWAAARTEVPAGTRRAIAIDGKTVRGLGSSTQHARHLLAAIDHRS
                     GVVLGQVDVDTKTNEISRFRCLCESIATLTDAVVTADALHTQRNHADYLVLERASHYL
                     LTVKANQPGLRNQLTALPWKDIPPAHTSADRAHGRVEQRIVKAVTVQTGIVFPHARQA
                     IQITRKTRRLDSKKWTTETVYAVTSLAAEQVTAAELASWIRGHWAIENRLHWVRNVTY
                     DEDRSQVRTGTGPRTMASLRNIAVSVLRITHGTTNIAQAIRHHAWDPLRPITLLLTN"
     gene            1429..>2135
                     /locus_tag="VF788_19290"
     CDS             1429..>2135
                     /locus_tag="VF788_19290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015787317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936278.1"
                     /translation="MLLLVTAIPIVLKVLLQHRHLQTHRAFCREYDRVAADIDPTLRG
                     GWPSKAQFYRWLAGDLVGIPYADHCRVLEQMFPGWTIDQLFQINDDGIGFIPEPSKAQ
                     PVTPSQSRSAAPQPVPARRSEPLAADQLKEAKISNLWPRTNPDVLDDLVARVNNAREE
                     ITVFGLTRNFYAKDDMLPVFEAKAVEIPVTFYVMDPYCDSRRDRYRIEPVEAAMEDPV
                     RYVREILRPLFDASQRI"
BASE COUNT          447 a          671 c          630 g          387 t
ORIGIN      
        1 tatcagcccc acgacatcag cattcgagaa ttggaaccgg gatccgcgcc tgtcccgcat
       61 tcggggaact tgattcgcga ccacggtgcc ctagccaggg ctccggcaaa gtcggtagtg
      121 atgaggtttg acctgcggtg atgctgagcg acacgccggg gagatagtag gacgggcacg
      181 gctctgtgtt gatcatgggg gttcctacgc catctgatca gcagaagaaa ccatgcccgc
      241 gccctcatca tcgccgatcc acccggtcct ggctgagctg accgccgcag ccgatgcccg
      301 caggctgtcg ggtgcgggtt tgctggccgc gctggggcag gtgccggatc cgcgcaaacg
      361 acggggcgtg cggcattcga tcacgacaat cctggcgtta gcggtctgcg cggtattggc
      421 cggttgccac tcgttcaccg cgattggcga gtgggccgcc aatgcctccg gccagatcct
      481 ggctgtgctg gaggtgggtg ggtatccacc gtgtgagtcg actattcgtc gcacgttgca
      541 gcgactagat ggcgatgagc tggattccgc ggtcggcggc tgggccgcgg cgcgcaccga
      601 ggtgcctgcg gggacgcgac gggcgattgc tatcgacggc aagacggtgc gcggcttggg
      661 tagcagcaca cagcacgccc ggcatctgct ggccgcgatc gaccaccgca gcggagtcgt
      721 cctcggtcaa gtcgacgtcg ataccaagac caacgagatc agccggttcc gctgcttgtg
      781 cgagagcatc gccaccctca ccgacgcggt ggtgacggcg gatgctttgc acacgcagcg
      841 aaatcacgcc gactatctgg tgctggagcg cgccagccac tacctgctca ccgtgaaagc
      901 caaccaaccc ggcttacgca atcagctcac ggcgctgccc tggaaagaca ttccaccagc
      961 acatacctcc gctgatcgtg cccatggacg ggtggagcag cgcatcgtca aggcagtgac
     1021 ggtacagacc gggatcgtct tcccgcacgc acgccaagcc atccagatca cccgcaagac
     1081 gcgccggcta gacagcaaga aatggaccac cgaaacggtc tacgccgtca ccagccttgc
     1141 cgccgaacag gtcaccgcag ccgaacttgc cagctggatc cgcggccact gggccatcga
     1201 gaaccgcctg cactgggtgc gaaacgtgac ctacgacgaa gaccgctccc aagtccgcac
     1261 cggcaccggt ccccgcacca tggcctcgct gaggaacatc gccgtcagcg tcctgcggat
     1321 aacgcatgga acaaccaaca tcgcgcaagc catccgacat cacgcatggg atcccctccg
     1381 acccatcaca ctgctgctga ccaactaaaa gggaactttg ccgaggccgt gcttctgctg
     1441 gtgaccgcca tacccatcgt gctgaaggtc ctgctgcagc accgccacct gcaaacgcat
     1501 cgagcctttt gtcgtgaata cgacagagtt gccgcggaca tcgatccgac gctgaggggt
     1561 ggttggccga gcaaagcgca gttctaccgg tggttggccg gcgacttagt cggaattccc
     1621 tacgcagatc actgtcgtgt cctagaacaa atgtttcctg gttggacgat cgaccagtta
     1681 tttcaaatca acgatgatgg gattgggttc atccccgaac catccaaggc ccagccagta
     1741 acaccgagcc aatctcgatc cgctgcgccg caaccagtgc cggctcgccg tagcgagcct
     1801 ctcgcagccg atcaactcaa agaagccaag atcagcaatc tgtggcctcg caccaaccca
     1861 gatgtgctgg acgacttagt ggcacgcgta aataacgccc gcgaagaaat cacggttttc
     1921 gggttgactc gcaactttta cgctaaagat gatatgttgc ctgtgtttga ggcgaaggct
     1981 gtcgagatac cggtaacgtt ttatgtcatg gatccctact gtgattcacg gcgggacagg
     2041 tatcgtatag aacctgtcga agctgcgatg gaagacccgg ttcgctatgt gcgagagatc
     2101 ctccggccac tctttgacgc ctctcaaaga ataga
//
LOCUS       DASVXZ010000919         4227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_798302, whole genome shotgun sequence.
ACCESSION   DASVXZ010000919 DASVXZ010000000
VERSION     DASVXZ010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4227
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_798302"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..1421)
                     /locus_tag="VF788_19295"
     CDS             complement(21..1421)
                     /locus_tag="VF788_19295"
                     /inference="COORDINATES: protein motif:HMM:NF025114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX8936279.1"
                     /translation="MPKVTTVVIGAGHCGLAMSRCLADRSIDHVVLERGEAANSWRTQ
                     RWDSLRLLTPNWLTRLPGYSYRGEEPDGYMTAPEVVQLIDEYASVTAAPVRTHVTVTS
                     VRPTDNGYLVCSDQDSWEARAVVLASGACNTAAVPTLHESVPAGITMLTPMGYRAPGQ
                     LPEGGVLVVGASASGIQIAEEVHRSGRAVTLAVGEHVRMPRSYRGLDILWWMDASGVL
                     DERYDEVPDIVRARNLPSMQLVGSPNRVTIDLNALSGMGVRLVGRLAGVRDGHAQFSG
                     SLPNLCALADLKLGRLLDTLDGWAADVGFDGSDPPERFASTAVPSPAPLTLDLRNGEI
                     RTIIWATGFRPDLSWLDVPVFNRKGQLIHDGGVTTWPGLYVIGMPFLRRRKSSLIDGA
                     APDARDLTAHLAGYLASPSRGQLTPLSPTSDSPHVAEQAVADQPECSQVGVPAPSAEH
                     EGDLQHDYTHVCHHVR"
     gene            complement(1447..2007)
                     /locus_tag="VF788_19300"
     CDS             complement(1447..2007)
                     /locus_tag="VF788_19300"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX8936280.1"
                     /translation="MAVTDLPVDNGVNVEALLGVRDSLADTPEIAQFQWRATCSWVKG
                     THSTSTVDTFYGFGGEQHHKTTFTYDADHPLAFAAEDNGVTPVEYVLVALGSCLTAGV
                     AAVAQQRQIQLRSVHATIEAEMDLHGILGADPEVRNGFNGITVTYKIDADATPDEIRA
                     LVAQSQKRSAVYDAITNPTNITVEVG"
     gene            complement(2313..2435)
                     /locus_tag="VF788_19305"
     CDS             complement(2313..2435)
                     /locus_tag="VF788_19305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936281.1"
                     /translation="MGTRMGWWCPLQWLGAVDWVLDQGIDGRDRFVLARTAGVW"
     gene            complement(2535..3776)
                     /locus_tag="VF788_19310"
     CDS             complement(2535..3776)
                     /locus_tag="VF788_19310"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX8936282.1"
                     /translation="MSASFSALSHLECSRSGATYSADTIQGTSTIGAPLLARYDLERV
                     AAIVTREEIAGRAPNLWRYHELLPVRAERNIVCLGEGMTPLLELPNYGAQLGVPDLRM
                     KDEGLIPTGTFKARGAAVGVSRAVELGVTGIAMPTNGNAGAAWSLYAARAGLRSLIAM
                     PVHAPKITQTECVVAGAELYLVDGLIGDAGALIVAAVAERDGYQNVSTLQEPYRIEGK
                     KTMGYEIIEQLGWRTPDVVLYPTGGGVGIIGIYKALLELRELGWLDGELPRLVAVQAT
                     GCAPIVEAFQRGATESVAAVNAHTVATGLNVSKALGDFLVLNAVRQTNGTSIAISDRE
                     LLTAQQQLARSEGIFVCPEGAACFAAVDTLRSAGWLHENETVVVLNTGTGVKYPDTVT
                     VEVPVLPPNGHIPPRTGNYRH"
     gene            complement(3933..>4227)
                     /locus_tag="VF788_19315"
     CDS             complement(3933..>4227)
                     /locus_tag="VF788_19315"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936283.1"
                     /translation="PVLWVILAEIFPLAVRGSAMAIATLFNWLAAFLVSLTFPGLTAL
                     AGAGTVYIAYAAAGVVIFPIVWWMVPETKERSLESLEAEFRNGLRPRSEKRSR"
BASE COUNT          786 a         1358 c         1346 g          737 t
ORIGIN      
        1 tgcggagggc ttcggcccga tcatcggacg tggtggcaga cgtgcgtgta atcatgctgc
       61 aaatcccctt cgtgctcggc tgatggtgcg ggcaccccaa cctgactgca ctcaggttga
      121 tccgcaacag cttgctcagc aacatgcgga gaatccgagg tcggggacag cggggtcagc
      181 tggccgcggg acggggaggc gaggtatccc gccaggtggg cggtcaaatc ccgcgcatcg
      241 ggcgcggcgc cgtcgatgag gctcgacttg cggcgccgga ggaacggcat gccgatgaca
      301 tagagaccag gccacgtggt caccccgcca tcgtggatga gctggccctt ccggttgaac
      361 accggaacgt cgagccaaga caggtccggg cggaagccgg tggcccagat gatggtgcga
      421 atctcgccgt tccgcagatc aagggtgagt ggcgcgggcg agggaaccgc cgtcgaagcg
      481 aagcgctccg gagggtcgct cccatcgaac ccgacatcgg ccgcccagcc gtcgagggtg
      541 tccaacagcc gccccagctt caggtcggcc agcgcgcaca ggttgggcag cgaaccggag
      601 aactgcgcat gcccgtccct cacaccggca agccggccga ccaacctcac ccccatcccg
      661 ctcagggcat tgagatcgat cgtcacgcgg ttaggcgagc caaccagctg catcgacggc
      721 aggttgcggg cccggacgat gtcggggacc tcgtcgtagc gttcgtcgag cacgcccgag
      781 gcgtccatcc accacaggat gtccaagccg cggtaggagc ggggcatgcg gacgtgttcc
      841 ccgaccgcca gcgtgacagc ccggccggag cggtggacct cctcagcgat ctggatccca
      901 ctcgccgaag cgcccacgac cagcaccccg ccctcgggga gctgacccgg ggcccggtag
      961 cccatcgggg tcagcatggt gatccccgcc ggcaccgact cgtgaagcgt cggcaccgca
     1021 gcggtgttgc aggcacccga ggccagcacc accgcccgcg cctcccacga gtcctggtcg
     1081 ctgcacacca ggtacccatt gtcggtaggc cggaccgacg tcaccgtgac atgggtccgt
     1141 accggggcag ccgttacgct ggcatactcg tctatgagtt gcacgacctc cggcgccgtc
     1201 atgtaaccgt cgggttcctc accccggtaa gagtatcccg gcagtcgggt cagccagttg
     1261 ggcgtcagca gccgaagcga gtcccatcgc tgcgttcgcc aggagttcgc cgcctcgccc
     1321 cgttcgagga ccacgtggtc gatcgaacgg tcggcgagac agcggctcat ggccagcccg
     1381 cagtggccag ccccgatgac cacggtggtc accttcggca caggtaccct ccagcgcagg
     1441 gccagatcag cccacttcga cggtgatgtt ggtcgggttg gtgatggcgt cgtagacggc
     1501 cgagcgtttc tgcgactgcg cgacgagagc cctgatctcg tccggggtgg cgtcggcgtc
     1561 gatcttgtac gtcaccgtga tcccgttgaa accgttgcgc acctcggggt cggcaccgag
     1621 gatgccatgg aggtccattt ccgcctcgat ggtggcatgc accgagcgca actggatctg
     1681 gcgctgctgg gcgaccgccg ccactccggc ggtcaggcag ctgcccaggg cgacgagcac
     1741 gtactccacc ggcgtaacac cgttgtcctc ggccgcgaac gccaagggat gatcagcgtc
     1801 gtaggtgaag gttgtcttgt ggtgctgttc ccctccgaag ccgtagaacg tatccacggt
     1861 ggaggtgctg tgggtgccct tgacccacga acatgtcgcc cgccattgga actgtgcgat
     1921 ttcaggagtg tcagctaagg agtcgcggac accgagcaat gcctcgacgt tgacaccatt
     1981 gtcgaccggg aggtcagtca cagccatgaa atactccttc ttgggttaat caagtcactg
     2041 acgattacca gcagcggtcg gttagcaggg attgtccgat ttgtcggcaa ttcgcgtgct
     2101 catgattcgc agtaggccag gctctccgtc ggcggctata aggccaccgc caactaacta
     2161 tgccgatcgg ccgagacccc ggccgatgct cagtcgatga tgttggtgtg tgggcgggaa
     2221 cagtgcggac ttggacacgc acaggtccaa accaaaccat ggtcaatatg ccgacggcgc
     2281 acgagaaacg agccaccggt catgcaatgt tcttaccaca cccccgcggt gcgggccagc
     2341 acgaaacggt cccggccgtc gataccttgg tccagaaccc agtccaccgc tcccagccac
     2401 tgcagcggac accaccagcc catgcgcgtg cccaccggtc gaagcttcca agtagccatt
     2461 caagcggagt gcgacgggtg acgcagggcc ggttggcgga ttccatcgct gtttatagcg
     2521 tcgtgacggc ggtgttagtg gcggtagtta cctgttcttg gagggatatg cccgttgggt
     2581 ggcagaacgg gtacctcgac ggtcacagtg tcgggatatt tgacaccggt gccagtgttg
     2641 agcacgacga cggtctcatt ttcgtgtaac catcccgcgg atcgcagtgt gtcgaccgcg
     2701 gcgaagcagg ctgccccctc cgggcatacg aaaatacctt cgctgcgcgc cagctgttgc
     2761 tgtgcggtca gcagttccct gtcgctaatc gcgatgctgg taccgttggt ctgccgtaca
     2821 gcgtttaaga ccaggaagtc acccaatgcc ttggacacgt taagcccggt cgccacggtg
     2881 tgcgcattca ctgcggcgac gctctcggtc gcaccacgtt ggaatgcttc gacgatcggc
     2941 gcgcagccgg tggcttgcac ggcgactaat cggggcagct caccgtcgag ccagccgagc
     3001 tcccgcagct cgagtaatgc cttatagatg ccgatgatgc ccacaccgcc cccagtcgga
     3061 tagaggacga cgtctggggt gcgccaaccg agctgctcga tgatctcgta tcccattgtc
     3121 tttttgccct cgatccggta gggctcctga agggtagaga cgttctggta tccatctcgt
     3181 tcggcaaccg cggcgacgat cagcgcgccc gcgtccccga tcagcccatc tacgaggtac
     3241 agctcggctc ctgcgaccac acactcggtt tgggtgatct tcggtgcgtg caccggcatg
     3301 gcgatcaagc tgcgtagtcc tgcccgggcg gcatagagcg accatgctgc cccggcgttg
     3361 ccgtttgtag gcatggcgat ccccgttacg cccagttcca ccgcacggga gaccccgaca
     3421 gcggcaccgc gggccttgaa ggtgccggtg ggtatcagac cctcgtcttt catccggagg
     3481 tccgggacgc caagttgcgc gccatagttc ggcagctcca gcagcggggt cataccctcc
     3541 ccgaggcaga caatgttgcg ttcggcgcgt accggcagca gctcgtggta gcgccacaga
     3601 ttcggtgcac gcccagcgat ctcctcccgc gtcacgatcg cggccacccg ctccaggtca
     3661 taacgtgcaa gcaaaggggc gccgatcgta gaggtgccct gtatggtgtc agcgctgtaa
     3721 gttgctccgg agcgagagca ctccagatgg gacagggcgg agaaactagc agacaccggc
     3781 gtctcctttt cccgatgaac atcgacgagg agcgggaaga tcccaccgcg gttctgctag
     3841 tcaagcaagc agccagcacc ggtcccgaaa aacctcatga cggcgaagca acgtcaatac
     3901 ccctaccacc acaaactacg agccacgtct gctcatcgtg agcgcttttc gctgcgaggt
     3961 ctgagaccgt tgcgaaactc tgcttccagt gattcgaggc tgcgttcctt ggtttcgggc
     4021 accatccacc acacgatcgg aaagattacg acaccggcgg cggcgtaggc gatgtagacg
     4081 gtgccggcgc ccgcaagtgc agtgaggccc gggaaggtga gtgatacgag gaaggctgcc
     4141 agccagttga aaagggtggc gatggccatt gccgaccccc ggacggcgag cggaaagatc
     4201 tcggccagta tgacccacaa caccggc
//
LOCUS       DASVXZ010000920         3246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1496241, whole genome shotgun sequence.
ACCESSION   DASVXZ010000920 DASVXZ010000000
VERSION     DASVXZ010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1496241"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1066
                     /locus_tag="VF788_19320"
     CDS             <1..1066
                     /locus_tag="VF788_19320"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8936284.1"
                     /translation="RRRRSVRAAELAVERARYGAQRAERAFRACEPENRLVARSLETR
                     WETALAELAEANTSLAAQSQAQPELSCPEQLAATVADLPVLWAAETTSDKDRKRLLRT
                     LLADVTITPSETDPTQLAVGLRWKSGASCQLAVTRRRSAIQLRTTDPAAIALARRIGP
                     SLDNAALAAALNQAGHRTGTGQPFNGVAAANLRHYHHIPYPGLLAEGELTPRQVAERI
                     SVSVGTIHYWINAGILPARRGPANRWCIPFPPEVESACRDHVLGSAHQNRDIDPQPRR
                     GTELSVTDVAHRVGVKPDVIYSWAEWGHIPSRRGPAGRVWIDYTPTVEQTCLKRITSS
                     YKLPDELKTQAARRLERAAL"
     gene            1083..2132
                     /locus_tag="VF788_19325"
     CDS             1083..2132
                     /locus_tag="VF788_19325"
                     /inference="COORDINATES: protein motif:HMM:NF012307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEX8936285.1"
                     /translation="MRDRVVQGALKLVLEPIFEADFLPCSYGFRPNRRAHDAVAEVRH
                     FASCSYEWFVEGDIKACFDEISHSALLNRIRVRIGDKRVLALVKAFLKAGILTEDGTL
                     ADTQTGTPQGGILSPVIANVALSVLDEHFVASRLNHEQRAKRRRRGLPNYRLIRYADD
                     WCLAVSGTRQQAEALRTEAAEVLSTMGLRLSPEKTLITHIDEGLDFLGWRIQHHRKRG
                     TTKHYVYNYPAKKALRAVLAKIKALCWQDTNLPLAVLLHRLNSMLRGWTAYFRYGCSS
                     KTFNYVRAYLWQRVFGWLRRKHPKATWKQLRRHTSDGWWAAENTVTLFNPAGVGTRRY
                     SYRGTKIPSPWPIGA"
     gene            2262..2639
                     /locus_tag="VF788_19330"
                     /pseudo
     CDS             2262..2639
                     /locus_tag="VF788_19330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          620 a         1129 c          976 g          521 t
ORIGIN      
        1 tcgccgccgc cgatccgtgc gggccgccga gctcgcggtc gagcgcgccc gctacggcgc
       61 gcagcgcgct gagcgggctt tccgggcttg tgaaccagag aaccggctcg tcgcgcgcag
      121 cctggagacc cggtgggaga ctgcgctggc tgagctggcc gaggccaaca cgagcttggc
      181 cgcgcagtcc caggcccagc ccgagttgtc ctgccccgaa cagctggccg cgacggtggc
      241 cgatctgccg gtgttgtggg ctgccgaaac caccagcgac aaagatcgca agcgtctgct
      301 gcgcaccctg ctcgccgatg tcaccatcac cccatccgag accgacccca ctcagctggc
      361 cgtggggctg cgctggaaat ccggcgccag ctgccagctc gcggtcaccc gcaggcgcag
      421 cgccatccag ttgcgcacca ccgatcccgc cgcgatcgcg ctcgccaggc gcatcggccc
      481 gagcctggac aacgccgccc tggccgccgc gctcaaccag gccgggcacc gcaccggcac
      541 cgggcagccc ttcaatggtg tcgccgccgc caacctgcgg cactaccacc acattcccta
      601 ccccggcctg ctcgccgagg gtgaactgac ccctcgccag gtcgccgagc ggatcagcgt
      661 gtcggtcgga acgatccact actggatcaa cgccggtatc ctccccgccc gccgtggacc
      721 ggcgaaccgc tggtgcatcc ccttcccgcc cgaggtcgaa tccgcctgcc gtgaccatgt
      781 cctcggctcc gcccaccaga accgcgatat cgacccccaa ccccgccgcg gcaccgagct
      841 cagcgtcacc gacgtcgccc accgcgtcgg agtcaaaccc gacgtcatct acagctgggc
      901 cgagtggggc cacatcccca gccggcgggg ccccgccgga cgagtctgga tcgactacac
      961 ccccacagtc gagcaaacct gcctgaaacg aatcaccagc tcatacaaac tccccgacga
     1021 gctgaaaacc caagccgcac gacgcctgga aagggcagca ctatgaagcc accgtccccg
     1081 cgctgcggga tcgggtggtc caaggtgctc tcaagctggt cttggagccg attttcgagg
     1141 cggatttcct tccgtgttcc tatgggtttc gcccgaatcg ccgggctcat gacgccgtgg
     1201 ccgaggtgcg tcatttcgcg tcctgctcgt atgagtggtt cgtggaaggc gatattaagg
     1261 cctgtttcga tgaaatctcg cattcggccc tgttaaacag gatacgggtg cggatcggag
     1321 ataaacgcgt cctggccctg gtgaaggcgt tcctgaaggc gggcatcctc accgaggacg
     1381 gcacgctggc ggacacccag accgggaccc cgcagggtgg gattctgtcc cccgtgatcg
     1441 ccaacgtggc cctgtcggta ctcgacgagc atttcgtcgc gtcccggctc aaccacgaac
     1501 aacgggccaa acgtcggcgc cgtggtttgc ccaactaccg gctcatccgg tacgcggacg
     1561 actggtgcct agccgtatcg ggcaccagac agcaggcaga ggccctgcgc acggaagcgg
     1621 cggaggtctt gtccacgatg ggcctacgcc tgtcaccgga aaagacatta atcacccata
     1681 tcgacgaggg cctcgatttc ctgggctggc gtatccaaca ccaccggaaa cgaggcacaa
     1741 ccaagcacta cgtctacaat tacccggcca agaaggcgct gcgcgcggtc ctggccaaga
     1801 ttaaggcgtt gtgctggcag gatacgaacc tgccgctcgc ggtcctgctg catcgactca
     1861 actctatgct gcggggctgg accgcctatt tccggtacgg atgctccagc aaaaccttca
     1921 attacgtgag ggcctacctg tggcaacggg tcttcggatg gttgcgccgc aaacacccga
     1981 aggcaacctg gaaacaactc cgccgccaca ccagcgacgg atggtgggcc gccgagaaca
     2041 cggtgacctt attcaacccg gcaggggtag gcacccgacg ctactcatac cggggaacaa
     2101 agatccccag cccttggccg atcggtgcgt gacggaaaca tcccacccaa cgggacttgc
     2161 ggagagccgg atgcccggct aacgggcacg tccggttcgg gaggcggccc ggagaaaccc
     2221 accaggagaa acactggcag ggcgctccgg gtcgacctca ctatgtgaaa gttgccgggc
     2281 gctgggtcta cttgtaccga gcgatcgatc agtatggcca ggtcattgac gtagtggtgt
     2341 ccgagaagcg ggacttagtg gccactcgcc ggttctttac ccgggctctg gatcatggca
     2401 cccaccccag cgcggtgacg acggacacag caccggccta tcctcgtgtg ctcgatgagc
     2461 tggtgcccgc tgcttgccat ctcactgagc agtacggtaa taacctcatc gaagcagatc
     2521 atggtcggct caaggccctg ctgcggccga tgcgcggcct taaacagctg cgctctatcc
     2581 gagtgatcag cgccggacac gcttttgttc agaacgtgcg ccggggccac tacgaacttg
     2641 gctcggaagt cgacccgaaa catcggctca cgacggcctt cgccgaactc accctcgcca
     2701 tctgatggtg acgcgacagc ggcctcatct cgcccgttct ccgtcaatgc aacaggaccc
     2761 gtcatcggcc aacgcaacag accccttccg ctggagatga tcgacgtcac ccccggcagt
     2821 cttccgtcgc gaatgggagt aatcctgtga cgggcacccc gacttccagg tcggttcatg
     2881 cctctgttgg gccacgtcac gggcaggcga cggccagcag cacgctatat gagagccatc
     2941 cagacacggc ggcacgaagc gtccgagcca accagccatc gccctcggca cgctatgggc
     3001 tgcaaaccca gcgacctgat ccatatccaa caagtcagaa gcgtcatgcc cgacgaccac
     3061 cgtccagcga tgccgcaggt cactgccgtg gatggccagt tcggcaccca caagcttggt
     3121 cttgagttga tcaagcaagc gggccgcggt ggggctccgg cggagaacac ccgttgcagg
     3181 cgcttgtaca cgctgtcgtc agggagcgcg ggcgcgtcgc cagccgaggc catgagttgc
     3241 ggatca
//
LOCUS       DASVXZ010000921         3339 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1696013, whole genome shotgun sequence.
ACCESSION   DASVXZ010000921 DASVXZ010000000
VERSION     DASVXZ010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1696013"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /locus_tag="VF788_19335"
     CDS             <1..498
                     /locus_tag="VF788_19335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936286.1"
                     /translation="DLIGPLAACLAVVAVAQLVGGVHDIGRRALFARLDDRIPRRASE
                     VAFGVVFVAAAAALLLPADGSRLVWLVVAILAGELAAAGTVVTRLRWAIQPERFLETR
                     SLTAALVATLALVPVAAALWWIQRIDNGDQLADLALLSLGGVVALGVYVLVLRVAARR
                     IGGGS"
     gene            495..1955
                     /locus_tag="VF788_19340"
     CDS             495..1955
                     /locus_tag="VF788_19340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010241260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936287.1"
                     /translation="MTQTLPPSFSSPPAGGRPGVTPGENPPAPVISRWLGLGAAGCAV
                     VGGVLAVATGPLIALGAIGVLVLVGFFAAAAYRPVFATYAYLGTLPIIAGIDRGHLIP
                     LVRPNEALLVVLLGGALVGGYLRWCRGERTPLQLHQLDIPLGVFLLASTAWPLLSMMM
                     RGHMPVSADLAAVLPVCKLVAIYLLVRFTVSTDTQLVRCFRLIIWPGAVVAIIAILQT
                     LHFGPIVAMLQAIWTPDSNAAALAERGTTTLASPIATGDYIIICLTLIICCGIRGLLD
                     RRERLGLGLVLGAGVLATGQFSTWISAVVAAGLILWRFTTVRRRSLRFLWLAPVALAI
                     GAPALIGRLQGFGEFGVPRSWIGRWSNLSDFYLPRFGVINVLFGVSPDSVLEAPERWR
                     DVIYLESGYLELLWVGGIPLLAAFIWLSVVVLRRTRELMAAPGAVGAAASALWVCWWF
                     VLILTVLDPHLTLRGTGDVLFMLIGITAGGLSAQRR"
     gene            1999..2595
                     /locus_tag="VF788_19345"
     CDS             1999..2595
                     /locus_tag="VF788_19345"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010241262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEX8936288.1"
                     /translation="MVDLAVVVMALLVLAIPMLLIATAIKWGSPGPAFYRQQRIGRGG
                     RPFTMYKFRTMRVGGSDAQHRELIARELRGEDTSVGGSWKIDCDPRITRVGSFLRRTS
                     VDELPQLINVLRGQMSLVGPRPCLDWEAEMFPAKFAERFDVPPGLTGLWQVSGRSTMG
                     TLEMLELDLAYVRSWSFWSDLGILLRTVPALLKGQGAR"
     gene            2632..3168
                     /locus_tag="VF788_19350"
     CDS             2632..3168
                     /locus_tag="VF788_19350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936289.1"
                     /translation="MTAVSATTFAIPRLPRRARTALLTMHVAVSVGWLGLDGALVALE
                     VSGLSTSDPSGRAGIAAAMAAIVVWVLVPVVFCSLVSGLVLALSTSWGLVRYWWILVK
                     CGISAALTASGLLLMLPRLHQIIDGDAEPVGMQMLIGRSIALALLLAATGLSVVKPWG
                     KTPHGRSIRTSRKTVQQK"
     gene            complement(3156..>3339)
                     /locus_tag="VF788_19355"
     CDS             complement(3156..>3339)
                     /locus_tag="VF788_19355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936290.1"
                     /translation="KGKWATEQRRIVTLRAGGEQARSNTEAGSMLGELTRLLTGDSVP
                     DEVTRKAGALLYRYFC"
BASE COUNT          423 a         1047 c         1183 g          686 t
ORIGIN      
        1 gacctgatcg gaccactcgc tgcctgcctt gcggtggtgg cggtcgctca gctggtcggc
       61 ggggtgcatg acatcggacg ccgggcgctg ttcgcccggc ttgacgatcg catcccccgc
      121 cgggccagcg aggtggcttt cggtgtggtt ttcgtggccg cagccgcggc tctgttgctg
      181 cctgccgatg gttcccggct ggtctggctg gtggtggcca tcttggccgg tgagctggcc
      241 gccgccggga cggtggtgac ccggctgcgc tgggcgatcc agcccgagcg gttcctcgaa
      301 actcgcagcc tgactgctgc actggtagcc accctcgcgc tcgttccggt ggccgccgcg
      361 ctgtggtgga tccaacggat cgataacggc gatcagctcg ccgaccttgc acttctgtcc
      421 ctgggtggtg tcgtcgcact cggggtttat gtcctggtgc tccgtgtcgc ggcgcgacgg
      481 ataggtggtg ggtcatgact caaaccctcc cgccgagctt cagctcgcct ccggccggtg
      541 gccggccagg cgtgactccc ggcgagaatc cgccagcccc ggtaatcagc cggtggctgg
      601 gcctgggcgc cgccggctgc gccgtggtcg gcggggttct cgcggtggcg accggcccgc
      661 tgatcgcgct gggcgccatc ggggtgctgg tgctggtcgg gttcttcgcc gcggcggcct
      721 accgcccggt cttcgcaact tatgcctacc tcggcaccct gccgatcatc gccggtatcg
      781 atcgcgggca cctgatcccg ttggtgcgtc ccaatgaggc gctgctggtc gtgctactcg
      841 gcggagcgct ggtcggcggt tacctccgat ggtgccgtgg cgagcgcacg cctctgcagc
      901 tccatcagct ggatattccg ctcggtgtct tcctgctggc ctctacggcg tggccgctgc
      961 tgtccatgat gatgcgcggg catatgcccg tgtccgccga tctggccgcc gtgctcccag
     1021 tctgcaagct cgtggccatc tacctgctgg tccgtttcac tgtcagcacc gacacccagc
     1081 tggtgcggtg tttccggctg atcatctggc cgggagcggt ggtcgcgatc atcgcgatcc
     1141 tgcagaccct gcacttcggc ccgatcgtcg cgatgctgca ggctatctgg acgccggaca
     1201 gcaacgcggc agcgctagcg gagcggggca ccacgacact tgcctcgccg atcgcgaccg
     1261 gcgactacat catcatctgc ctgactttga tcatctgctg cgggatccgg ggcctgctgg
     1321 atcgccggga gcggctgggc ttggggctgg tgctcggtgc cggtgtgctc gccaccggtc
     1381 agttctccac ctggatttcc gcggtcgtag cggcaggact catcctgtgg cgcttcacca
     1441 cggtgcgccg caggtcgctg cgattcctgt ggctggcccc ggttgccctc gcgatcggtg
     1501 cgcccgcgtt gatcggccgg ctgcagggct tcggcgagtt cggcgtgcct cgcagctgga
     1561 tcggccgctg gagcaacctg tccgacttct acctgccgcg gttcggtgtt atcaatgtcc
     1621 tgttcggggt gtcgcccgac tcggtgctgg aggcacccga gagatggcgc gatgtcatct
     1681 acctggaaag cggttacctg gagctgctct gggtgggtgg aatcccgctg ctggccgcgt
     1741 tcatctggct ctcggtcgtg gtgctacgcc gaactcgtga gctcatggcg gcaccgggcg
     1801 cggtgggagc ggcggcgtcg gcattgtggg tgtgctggtg gttcgtgctc atcctcaccg
     1861 tgctcgatcc acacctgacg ctacgaggca ctggggacgt gctgttcatg ctgatcggaa
     1921 tcactgcggg gggactcagt gcacagcggc gttgaacagg aacgctcgta cgctcggtgg
     1981 gaaccggtcg cgcggcgtgt ggttgatctc gcggtagtgg tgatggcgtt gcttgtgctc
     2041 gccatcccga tgctgctgat cgcaacggcc atcaaatggg ggagcccggg cccggccttc
     2101 tatcgccagc agcggatagg ccggggcggc cggccgttca cgatgtacaa gttccgcacc
     2161 atgagagtgg gtggttccga cgcgcagcac cgcgagctga tcgctcggga gctgcggggg
     2221 gaggacacct cggtcggcgg cagctggaag atcgactgtg acccgcggat aacccgggtc
     2281 ggctccttcc tgcgacgcac cagcgtcgac gagcttcccc agctgatcaa cgtgctccgg
     2341 ggccagatgt cgttggtggg cccccggccc tgtctggact gggaagcgga gatgttcccg
     2401 gccaagttcg ccgagcgatt tgacgtcccg cctgggctca ccgggctctg gcaggtcagt
     2461 gggcgcagca cgatgggaac cctggagatg ctcgaactcg acctcgccta tgtgcgtagt
     2521 tggagcttct ggagtgatct cgggattctg cttcgaaccg tcccggcgct gctgaagggc
     2581 cagggcgcgc gctgagtaaa agatcgtctc tggtagctgg ggggagcagc cttgacggca
     2641 gtctctgcaa cgactttcgc gatacctcga ttaccgcgtc gggcccggac ggccttactc
     2701 accatgcatg tcgcggtgtc ggtggggtgg ttgggacttg acggtgcact ggtggcgctg
     2761 gaggtcagtg gactgagcac cagcgatccc agtgggcggg cggggatcgc cgctgccatg
     2821 gcggcgattg tcgtgtgggt gttggtaccc gtggtgttct gctcgctggt cagtgggttg
     2881 gtgctggcgc tgtccacttc gtggggtctg gtccggtact ggtggatact cgtcaagtgc
     2941 ggcatctctg ccgcgttgac cgccagcgga ctgctgttga tgttgccccg gttgcatcaa
     3001 atcatcgacg gggacgctga gccggtcggg atgcagatgc tgatcgggag atcgatcgcg
     3061 ctggcgctgt tgctcgcggc gaccgggctg tcggtggtca agccctgggg gaagacgccg
     3121 cacgggcggt cgattcggac aagccggaag acagttcagc agaagtagcg gtacagcaac
     3181 gccccggctt tcctcgtcac ctcgtcgggc accgaatcgc cggtgagcag ccgggtgagt
     3241 tcaccgagca tcgagccggc ttcagtgttg ctgcgggcct gctccccgcc ggcccgcagg
     3301 gtcacaatcc gccgctgttc ggtcgcccac ttacccttg
//
LOCUS       DASVXZ010000922         3508 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1496475, whole genome shotgun sequence.
ACCESSION   DASVXZ010000922 DASVXZ010000000
VERSION     DASVXZ010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1496475"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            328..615
                     /locus_tag="VF788_19360"
     CDS             328..615
                     /locus_tag="VF788_19360"
                     /inference="COORDINATES: protein motif:HMM:NF021378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEX8936291.1"
                     /translation="MVGVGLIFGPHILDERFARGEIDEQEYQQRRWRLGACGTPIDKK
                     LSMLRRCATLGGDPLRDWRETAGSPAQPNIAGCRTSSQRDAETSSPAETIG"
     gene            complement(845..1204)
                     /locus_tag="VF788_19365"
     CDS             complement(845..1204)
                     /locus_tag="VF788_19365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936292.1"
                     /translation="MALAGALCAIVHTITGFTNRSLRARVATLLGEPYSSNQMSYDLR
                     RLRLKGLITRLPHTNTYVLTNEGQRVTTFYTKVHDRLLRTLLAANAPPAPLPLRQALR
                     VIDRHIDDYIIEARMAA"
     gene            1513..2769
                     /locus_tag="VF788_19370"
     CDS             1513..2769
                     /locus_tag="VF788_19370"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX8936293.1"
                     /translation="MEIIYERVAGIDVGKKIIAVAVRTPGARAGKRRQELRKFNTYYR
                     TLTEMVAWLVAEGVTHVTMEATGVYWRPVFHALCEAQRPLEVLLVNARHVKNVPGRKS
                     DALDAVGLAKLTECGLLRGSFIPPPQIAAIRELTRYRKKLIEARTSELQRLAKVLEDG
                     GIKIDSVASALTTLSARDMIEALINGERDPAVLANLARGRMRSKIPDLRLACAGRFSV
                     QHTLMCTLHLEHIDHLTDMIARLDTRIDEASLPFAQPIELLATIPGISERAAQVIISE
                     IGVDMARFPTAAHLASWAGLCPGNNESAGKHRSGRTRKGSKELRALLTECAWSAGRTS
                     TYLGAQFRRFHRRFGKKGGQKAATATGHTMIVIIWHVLAETTAYRELGADYFTTRIDS
                     PDARKRRLIRELEALGHKVTIEPAAA"
     gene            3281..3490
                     /locus_tag="VF788_19375"
     CDS             3281..3490
                     /locus_tag="VF788_19375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936294.1"
                     /translation="MTSSAPTRSPLGMSYSAPTTNKSTLNWIGDKGYLGLGMLIPIRK
                     LPHRELLDWEKEFNAALDKIRWKIE"
BASE COUNT          641 a         1056 c         1167 g          644 t
ORIGIN      
        1 ttcgtggtgg cgctgccggt gaaccgggca ctgatcgccc gcggtaaggg acacgccgtg
       61 gtgcatcagt accatcactg atcagccctc gtagccgcgg tgtcggagga gcagaagatt
      121 cgaggagtga gaagcacgtg caccgacgtg cgtgctgcaa ccgacgaggc gggctggcgg
      181 cgacgggaca cgctgtcctc gccagggatg tgatgtcgtc gtgatgtgcg gctggatgat
      241 gggttggatc tggatctggc ccgtgctggt gctgattggt ctggtgatcc ttggttatgt
      301 ggggattcgg ctgatccagg ggggaggatg gtgggcgtcg gactcatctt cggcccgcat
      361 atcctcgatg agcggtttgc ccgcggggag atcgacgagc aggaatacca gcaacgacgt
      421 tggcgactag gcgcttgcgg gaccccgatc gacaaaaagt tatctatgct gcgccggtgt
      481 gccacgctcg gaggcgatcc cctccgtgac tggagggaga cagccggctc gccggcacaa
      541 cccaatatcg ccggctgtcg cacatccagc caaagggacg cagagacctc gtctccagcg
      601 gagaccatag ggtgacccat cggagaggcg gcggctggac ctgctcgccc gtgccgtcta
      661 cgtgcgtaaa tgcacacaat gcgcggtgag gtggggcctg tgtgcctacc tggctcgaaa
      721 cgccaggcga gtgctgtgcg cccgtaacca gagctgcccc gtcaggggcc atcccttccg
      781 agcggcgtct cggacgggac gtagcgcccc ttgggcgcta gggtgttgag acttgagcag
      841 agtttcaggc tgccatgcgg gcctcgatga tgtagtcgtc gatgtggcgg tcgatgaccc
      901 gcagtgcttg gcgcaggggt agcggtgcgg gtggggcgtt cgcggcgagt agcgttcgta
      961 gcaggcggtc gtggactttg gtgtagaagg tcgtgactcg ctgaccttcg ttggtgagga
     1021 cgtaagtgtt ggtgtgaggc agtcgggtga tcaatccttt gagccgcagg cgtcgcaggt
     1081 catagctcat ctggttgctg gagtacggct cgccgagcag ggtggccacc cgggcgcgaa
     1141 ggctccggtt ggtgaacccg gtgatggtgt gcacgatggc gcataaggcg ccagccaggg
     1201 ccatgacccg agggtcgccg aaccgcaggg ccggggccct ccgaccatcg cagatggttg
     1261 gtcgcgcgac ccgctcaaag atcctgatgg cgctggtgcg gcgctcgcgg gtcgatgaaa
     1321 cttggggggc gtcgcccgct gacgtcgttc ctgcctggcg cgggttgagc ccgtctcaaa
     1381 gattgacgct ggagcccgtc ccggtgggta ctccgggttg ccgcctgttc gagcgcgagt
     1441 ctcagactct gaatgttcat gcgggctccg cgggtcgacg tcccgtagtg atggttcggg
     1501 aaggggccca cggtggagat tatttatgag cgagtcgcgg ggatcgatgt cggcaagaag
     1561 atcatcgcgg tggcggtgcg gacgccgggc gcgcgagccg gaaagcgccg gcaggagctg
     1621 cgcaagttca acacctatta ccggacgttg accgagatgg tggcttggct ggtcgccgaa
     1681 ggcgtcacgc acgtgaccat ggaagcgacc ggggtgtatt ggcgtccggt gtttcacgcg
     1741 ctgtgcgagg cccagcgacc gctggaggtg ttgttagtca atgcccgtca tgtcaaaaac
     1801 gtgcctggtc gaaaaagcga tgcccttgat gcggtggggt tggcgaagtt gacggagtgc
     1861 ggtttgctgc ggggcagttt tattcctccg ccgcagatcg cggcgatccg ggagttgacc
     1921 cgctatcgca aaaagcttat cgaggcgcgc accagcgagc tgcagcggtt agcgaaagtc
     1981 cttgaagacg gcgggatcaa gattgactcg gtggcctcgg cgctgactac cttgtcggcc
     2041 cgggacatga tcgaagcgtt gatcaacggc gagcgtgacc ccgcggtgct ggcgaacctg
     2101 gcacgcggcc ggatgcgcag caagatcccg gatttgaggt tggcctgcgc gggccgtttc
     2161 agcgttcagc acacgctgat gtgcaccctg catctggaac acatcgatca cctcacggac
     2221 atgatcgccc ggctggacac ccgcatcgac gaggccagcc tcccgttcgc ccaaccgatc
     2281 gagctgctgg ccacgatccc cgggatcagt gagcgcgctg cccaggtcat catctccgag
     2341 atcggtgtcg acatggcccg atttcccacc gcggcgcacc tggcctcctg ggctggactg
     2401 tgcccgggaa acaacgaatc cgccggcaag caccgctcgg ggaggacccg caagggcagc
     2461 aaagagctcc gcgcgctcct caccgagtgc gcctggtccg ccgggcgcac cagtacctac
     2521 ctgggcgccc agttccgccg cttccaccgg cgctttggca agaagggtgg ccaaaaggcc
     2581 gccacagcca ccggccacac catgattgtg atcatttggc atgtgctcgc cgagaccacc
     2641 gcctaccgcg agctcggcgc ggactatttc accacccgta tcgatagccc cgacgcccgc
     2701 aaacgccggc tcatccgcga actcgaggcc ctcggccaca aggtcaccat cgaacccgcc
     2761 gctgcgtaat cggtcaccaa taacagctca ccgaccaccc ggcctgggcg ccgggtcacc
     2821 gacccctgcg tcctgaacgt gtctggtcac cgtagttacg tctcagagcc tcactcaggg
     2881 atggccccgg ggtgagccca aaggggtgag tcaacagctg cgcgagtatc acgggcgagg
     2941 agtcttgtga ccggctttgt cgatctgacc cgcggaaatg gcccggcggg cactgttgca
     3001 ttgagcgttc gggccacccg acgtgatcaa cttgcccacc cagaagccac actagacctt
     3061 cgatatgccc ggtttgttat agttctcaac ggtgtctgag gggtccgccc cgctgctttg
     3121 gtgcttggtg agaacgccct tcgccttaat gcaacagtgc cagccaggca gcaccactga
     3181 ggtcactacc accgccggcg ttgccatccc ggtgtcacct gcgacgtcgt gatcagctcg
     3241 gtgggttgat acacgaatac gcccaggtct catgacgtag atgaccagtt cggcgcctac
     3301 aaggtcaccg ctggggatga gctattcggc acccacaacc aacaagtcga ccctcaactg
     3361 gatcggtgac aaaggttacc tcggcctcgg catgcttatt cccatcagaa aactaccgca
     3421 ccgcgaactc ctcgactggg aaaaggagtt caacgccgcc ctcgacaaaa tccgctggaa
     3481 aatcgaataa actatcgcca acctgaag
//
LOCUS       DASVXZ010000923         2715 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_979793, whole genome shotgun sequence.
ACCESSION   DASVXZ010000923 DASVXZ010000000
VERSION     DASVXZ010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2715
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_979793"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..857
                     /locus_tag="VF788_19380"
     CDS             <1..857
                     /locus_tag="VF788_19380"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX8936295.1"
                     /translation="LVVLVIASMWLVSRTVDGVHAMFGPPAVSGNPLSSVAPARSASS
                     GSPTIDRIAQRGKLIVAIQEVPGLAQRSSGSSPYTGFDIALLDLIAQDLRVDPARTNF
                     KPLPASVREAALDRGEADLLLGGYEIPASPDSNVGNAGPYLVRPLQVAVPASSPVSDL
                     RSVGQREVCAPVGSPAATALAARGVTLQTRSTLASCADLLGGRIGAVAGDQAAVAALL
                     SRTPRTLRILTEPLGTTEYGVGLAPRDPVLHDRITAVLRRAIDNGTWARLYAEYLGTP
                     VPSPPTPR"
     gene            complement(859..1617)
                     /locus_tag="VF788_19385"
     CDS             complement(859..1617)
                     /locus_tag="VF788_19385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEX8936296.1"
                     /translation="MGTQRRFRVWRGDADGGDLVDFDVQVNEGEVVLDVIHRLQATQA
                     PDLAVRWNCKAGKCGSCSAEINGRPRLLCMTRMSTLPEQQPVTITPMRTFPVIRDLVT
                     NVSYNYQKAREIRAFVPPKGVQPGEYRMQQVDVERSQEFRKCIECFLCQNTCHVIRDH
                     EENKASFSGPRFLMRIAELDMHPLDAADEEGVDRKQTAQDEHGLGFCNITKCCTEVCP
                     EHIKITDNALIPMKERVVSLRFDPLARLFRRNRR"
     gene            complement(1619..>2715)
                     /locus_tag="VF788_19390"
     CDS             complement(1619..>2715)
                     /locus_tag="VF788_19390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEX8936297.1"
                     /translation="GGVLRNSENKRFMFDYIPDVFKDKYATSAEEADRWYDDPDHNRR
                     PPELLPRDEVARAINSEVKAGRGSPHGGVFLDVSTRLPAEVITKRLPSMYHQFKELAD
                     VDITAEPMEVGPTCHYVMGGVQVDPDTAAASVRGLFAAGEVAGGMHGSNRLGGNSLSD
                     LLVFGRRAGLGAATYVDALGSYRPSIAVADVEAAAQRAISPFCADVHGEGAENAYQLH
                     QELQQTMNDLVGIIRRADEMELALKKLGELSRRAEHVVVEGHRQFNPGWHLAVDLRNM
                     LLVSECVARAALERTESRGGHTRDDYPVMEPEWRGVLLVCTRDLSSAEASVHVQRQDQ
                     VPMRADLVQLFELDELKKYFTADELPGGMD"
BASE COUNT          474 a          910 c          820 g          511 t
ORIGIN      
        1 tgctcgtggt gctcgtcatc gcctcgatgt ggctggtaag ccgcaccgta gacggcgtcc
       61 acgccatgtt cgggccgccc gccgtaagcg gcaacccact cagcagtgtc gctccggcgc
      121 ggtcggcgag cagtggctcg ccgaccattg accgcatcgc ccagcggggc aagctcatcg
      181 tggcgattca agaagtgcct gggttggcgc agcgctcgtc aggatctagc ccttacaccg
      241 gcttcgatat cgccctgctg gatctgatcg cgcaggacct gcgggtggat cccgcgcgca
      301 ctaacttcaa gccccttcct gcgagcgtcc gcgaggccgc actagaccgt ggcgaagcgg
      361 accttctact cggcgggtat gagatccccg catcgccaga ctccaacgtg ggcaacgcag
      421 gcccctatct ggtgcgtccg ttgcaagtgg cagtgccagc gagcagtccg gtaagcgatc
      481 tgcgatcagt tggccaacgg gaggtgtgcg cacccgtggg ctctccggcc gcaacggcgc
      541 tggccgctcg cggggtgacg ctgcagaccc gctcgaccct cgcctcgtgc gcggatttgc
      601 tcggaggccg catcggggcg gtcgccgggg atcaggccgc ggtggcagcg ctgctctccc
      661 gaacaccccg cacgctgcga attctcaccg agccgctggg gaccacggag tacggcgtcg
      721 gcctggcgcc gagggacccg gtgctccacg atcgcatcac cgctgtacta cggcgcgcga
      781 tcgacaacgg cacgtgggct cggctctacg ctgagtatct gggcactccg gtgcccagcc
      841 ctcctacacc gcgttgacct accgccggtt gcggcggaac aaccgcgcca gcgggtcaaa
      901 gcggaggctg accacccgtt ccttcatcgg gatcaatgca ttgtccgtga tcttgatgtg
      961 ctccggacac acctcagtgc aacacttggt gatgttgcag aaacctaggc cgtgctcgtc
     1021 ctgcgcggtc tgtttgcggt ccacaccctc ctcgtcagcg gcgtcgagcg ggtgcatgtc
     1081 aagctcagcg atccgcatca ggaaccgtgg tccggagaaa ctcgctttat tttcttcgtg
     1141 gtcacggatc acgtgacagg tattctggca caggaagcac tcgatgcact tgcggaactc
     1201 ctgcgatcgt tccacgtcga cctgctgcat ccggtactca cctggctgca cacccttggg
     1261 cggcacgaac gcgcgaatct cgcgcgcctt ctggtagttg tacgaaacgt tggtgacaag
     1321 atctcggatg accggaaaag tacgcatcgg ggtaatcgtg accggctgct gttccggcaa
     1381 ggtagacatc cgcgtcatgc acagcaggcg agggcgaccg ttgatctcgg cgctgcacga
     1441 tccgcactta ccagctttgc aattccaccg caccgcaagg tcaggagcct gggtcgcctg
     1501 cagccggtgg atcacgtcaa gaaccacttc cccctcatta acctgcacgt cgaagtcgac
     1561 cagatccccg ccgtcggcgt caccccgcca gacccggaaa cgccgttggg tgcccatgtc
     1621 agtccatccc tccgggaagc tcgtcggcgg tgaagtactt cttcaactca tcgagctcaa
     1681 atagttgcac cagatccgcg cgcatcggga cttggtcctg acgttggacg tggacactgg
     1741 cctccgcgct gctcaaatcc cgcgtacaca ccagcaggac gcctcgccat tcaggctcca
     1801 tcaccgggta gtcgtcgcgg gtgtgaccgc cccggctctc ggttcgctct agtgcggccc
     1861 gtgccacaca ctcgctgacc aacagcatgt tgcgcaggtc caccgccaga tgccaaccgg
     1921 gattgaactg gcggtgaccc tccaccacaa cgtgttcagc tcgccggctc aactcgccga
     1981 gctttttgag tgcgagttcc atctcgtcgg ccctgcgaat gatgccgacc aggtcgttca
     2041 tggtctgctg aagttcttgg tgcaattggt aggcgttctc tgcgccttcg ccatggacat
     2101 ccgcgcagaa gggactgatc gctcgctgcg cagcagcctc gacgtcggcc actgcgatcg
     2161 acggccggta cgaaccgagg gcgtccacgt aggtcgccgc cccgaggcca gcgcgtcgac
     2221 cgaacacgag caggtcggat agcgagttac cgcccaagcg attggaacca tgcatcccgc
     2281 cagcgacctc accagcggcg aagagcccac gcaccgacgc tgccgcggtg tccgggtcga
     2341 cctgcacacc gcccatcacg tagtggcagg tggggcccac ttccatcggc tcggctgtga
     2401 tgtcgacgtc ggccagttct ttgaactggt gatacatcga gggaagtcgc ttcgtgatga
     2461 cctcggcagg tagccgagtg gagacatcaa ggaagactcc gccatgcggc gaccctcggc
     2521 cggccttgac ttcggagtta attgcccgcg ccacctcatc acgcggcagc aattccggtg
     2581 gcctgcggtt gtgatccgga tcgtcatacc agcgatctgc ctcttccgcc gacgtcgcgt
     2641 acttgtcctt gaagacgtct gggatgtagt cgaacatgaa gcgcttgttc tccgagttgc
     2701 gcagcacacc accgt
//
LOCUS       DASVXZ010000924         2922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_621105, whole genome shotgun sequence.
ACCESSION   DASVXZ010000924 DASVXZ010000000
VERSION     DASVXZ010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621105"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..516
                     /locus_tag="VF788_19395"
                     /pseudo
     CDS             6..516
                     /locus_tag="VF788_19395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011603653.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
     gene            604..888
                     /locus_tag="VF788_19400"
     CDS             604..888
                     /locus_tag="VF788_19400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936298.1"
                     /translation="MADPQASRHRPAPRRNGPTWRRFLTAQAHGILATDFFSVDTLLF
                     HRLSVLFVVEHATCRVHILGITANPSGAWVAQQAWNFLMDLGERVVILCP"
     gene            complement(1243..1590)
                     /locus_tag="VF788_19405"
     CDS             complement(1243..1590)
                     /locus_tag="VF788_19405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005463932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsr2 family protein"
                     /protein_id="HEX8936299.1"
                     /translation="MATQTKVELIDDLTGDKADETVLFGIDGREFEIDLSRDHAGELR
                     DNLARYLAKARKVGKLTTVSTPAKRTASGQRQSREQTAAIREWARANGHNISDRGRIP
                     LEVAKAFEDAHRD"
     gene            2386..>2922
                     /locus_tag="VF788_19410"
     CDS             2386..>2922
                     /locus_tag="VF788_19410"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX8936300.1"
                     /translation="MLDPWTVADREVADAVAGSFLRGLPPDLVDALVEVGERTDYPGG
                     STIYRQGSYPRALLVVGGLLRVYMTSPEGRQVTVRYARTCDVLGIAVLVGGPADVGVQ
                     TLAESSLFRIDSRTLTSAAHRDARVSWALAEELNRRLYETLRQTAINAFGSVRQRVAA
                     HLLDLASTQQRPGGQLVVG"
BASE COUNT          480 a          924 c          951 g          567 t
ORIGIN      
        1 gggaagtggt cgtgctggca gtgcgctggt atctccgtta tggactgtcg tatcgcgatg
       61 ttgaagagct gctggctgag cgcggagtgc aggtcgacca cgtcagcgtc tttcgctggg
      121 tgcagcgctt cacgccgttg ctcgcggagg cggcgcgcgc gtgctggcac cgtgtcggcg
      181 accgctggtg ggtcgacgag acctacgtca aagcgtccgg tcggtggcgc tacgtctacg
      241 gcggcggtct acccgtgtgt tctggaggag gtggccccgg ctgctgggca ctgtacggag
      301 gtctacgcta ataatcggat ggaagctgac cacgggcagc tcaagcggcg tctacgaccg
      361 atgcgtggtc tgaagacgga tcattcagcc agaggcatca ttgctgggca cgcattcatc
      421 cagaacatcc ggcgaggcca ttacgagctc ggcgttgcgg aaacggtgac cttgcgagtg
      481 atggccgccg tcgacgagct ggccctggcg atctgattag tccaaggatc aacggtctcg
      541 cctgcctcgg cctcgccaag tgcaacaacg ccgactcggt taccccattg cacccagcat
      601 ggtgtggctg atcctcaagc gagccggcat cgacccgcgc cccgccgcaa tggtcccacc
      661 tggcgacggt ttctgaccgc ccaagcgcac ggcatcctcg ccaccgactt cttcagcgtc
      721 gacactctgc tatttcaccg gttgtccgtg ttattcgtcg tggagcatgc cacctgccgc
      781 gtccacatcc tgggcatcac agcgaatccg agcggcgcct gggtcgctca gcaggcgtgg
      841 aacttcctga tggacctcgg cgagcgcgtg gtgatcttat gtccttgatc cgggaccagg
      901 actatctcgc ccagctccgc gaggtcacac agaccaccgg cgtgctgccc tagccctgat
      961 gaggccacgc cgacgccaac cgctcctgtc gcggaggcac tgacgcgtta agcgatcgac
     1021 ccacccaacc tgctccaccc gttcgcccag aagtcatgcg agatgccctc aggtgtccgg
     1081 ccttatttgg gtttgccaag ggcgcctgag gggtcttgcc ttcctgcttg gtgcacggcg
     1141 gggacgctca tcgcctcact gcagtgccgg gcaaggtcgc tgcccgatgg aatggaccgc
     1201 gaccttgccc gcccggcacc tgtcgttatc accgcatggc cgctagtccc ggtgagcgtc
     1261 ctcgaacgct ttcgccacct ccagcgggat gcggccacgg tctgagatgt tatgcccgtt
     1321 cgctcgtgcc cattcgcgga tcgcggcggt ctgctcccgg ctctgccgct ggccgctggc
     1381 cgtgcgtttc gccggggtcg agacagtggt gagcttgccc accttgcgtg ccttcgcgag
     1441 gtatcgcgcc aggttgtcgc gaagctcacc agcgtgatcg cgggacaggt caatctcgaa
     1501 ctctcggccg tcgatgccaa acaggaccgt ctcgtcagct ttgtcaccgg taaggtcgtc
     1561 gatcagttca actttggttt gggtcgccac agttcactcc cataaggacg tagagggatt
     1621 atccgaggca gaatagacca ttacccggac cagataaaac tcgggtagct tgtcggcttc
     1681 gccagtggcg taaagccgac gagcacagtc ccaaccagcg tggtggcaat ggccgacccg
     1741 aaggcctcgg acagcgacag atccgcatgg tttcacacac gcccccgtgg gtcagggata
     1801 caggatgcag gtccccctct ggcgaccatt aatactggag ccgatgctcc tacaccggtc
     1861 ctagctcgag cagatggcag ggatctgtac ccgccagcac ggctgtccga aacagctggc
     1921 ctccaggcac gtcttacagc ccgatgacgg gaacgccccg ccgctcttgc tgatcgtcac
     1981 cgtcgtcgga ccctccaggt tgccattcgc aatgatcgcc gcgaagccac cgctggtgtc
     2041 ttctagatga gcccagcaat acgggacgcc gctatcggcc ccccggtctg cggcaaagcg
     2101 ccgggtgtac tccgccgctg tgcaacgacg gcaccgataa aagaacgcga ctcctcactt
     2161 gagacgcacc tatcgggtga ctactagaca cggggtgagc aagcggcgag gccggtcggc
     2221 tcggttcgca gtggcgagca aagcatgcct catcgaccac cgcggctgag tcatgtcccg
     2281 gctcggctca tgtgatcatc gcaacgcact cttctgccga ataggggacg ttggccggtt
     2341 ggcttcctgg ccggggcggc tgggttcttc acgctcctga ctctcatgct ggatccttgg
     2401 acggtggccg acagggaggt tgcggatgcc gtggcgggca gctttcttag ggggctgccg
     2461 ccggacctgg tcgatgcgct ggtggaggtg ggggagcgta ccgactatcc ggggggcagc
     2521 acgatatatc ggcagggttc gtatccgagg gcgctgctcg tcgtcggcgg gttgttgcgt
     2581 gtctacatga cgtctccgga gggccgacag gttacggtcc ggtatgcgcg cacctgcgac
     2641 gtgctgggga tcgccgtcct cgtgggaggg ccggctgacg tcggggttca gacgctggcc
     2701 gagtcgagcc tgttccggat cgactcacgg acgttgacgt cggcggcgca ccgcgatgcc
     2761 cgggtctcgt gggcgctagc ggaggagctg aaccgacggc tgtatgagac gttgcggcag
     2821 acggcgatca acgcctttgg ctcggtgcgc cagcgagtgg ctgcgcacct gttggatctc
     2881 gcatccactc agcagcgccc ggggggccag ctcgttgtgg gt
//
LOCUS       DASVXZ010000925         3498 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1697604, whole genome shotgun sequence.
ACCESSION   DASVXZ010000925 DASVXZ010000000
VERSION     DASVXZ010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3498
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697604"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(695..1933)
                     /locus_tag="VF788_19415"
     CDS             complement(695..1933)
                     /locus_tag="VF788_19415"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8936301.1"
                     /translation="MSESVDVVVVGGGIAGSALATVMARDGYQVVVLERQTTYRDKVR
                     GEWMACWGVAELLRLNLEKALLDAGGCYVTRAVPYDEVTDPAQAEAAVPPLDGILPGV
                     PGVLHVGHPEACEALNQAAEAAGATVIRGIGEVDLELGNAPMVRYEHDDIIYEQRCRL
                     LVGADGRMSTVRRRLGIELHRTIPRTMCGGMLVDGLQAWPANQFSVGTEDELLYFVFP
                     RGNGLVRLYLLHDIAQKGRFTGPDRQAEFLAAFGFRCIPNSEMFGAARPVRPCAFYPM
                     NDTWTNQPYGPGVVLIGDAAGWNDPIIGQGLSIAIRDVGIVTDILRTESNWSPAAFAG
                     YGDERRERMRRLRITAQLRTDLAATFTPAGAARRRAYNTIWPTDPVLGGPHLTMLLGP
                     DHASAESFSQPTIDQILALT"
     gene            complement(2746..3138)
                     /locus_tag="VF788_19420"
     CDS             complement(2746..3138)
                     /locus_tag="VF788_19420"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8936302.1"
                     /translation="MSDEENRQIVVDAYAAFGRGDIEAVIDSLAEDVVWTNHSFPASP
                     TSGVFHGQDGIWDFFTVVADTLDINKFDVRTIVAEGDVVVVWVDYLATIRSNGKTIDG
                     PLVHWTTLHNGKLATFDEFEHETHDGWT"
BASE COUNT          632 a         1199 c         1022 g          645 t
ORIGIN      
        1 ttgggcgtaa tcggtcaggc ctaccacgac gacagcatca ctctgccgca cccattcgtg
       61 ctccctgctg tacttaagat cctgaggaac gttgtttgcc atgacgaacc cctcactccc
      121 gcgcatcggc catgtagatc atgcaccagc taccatcatc gccaccctcg cgcatgggtc
      181 cgtcaccagg ttcacgcccc taacgcgcct ccggcgggcc gggccgttcc gggatcgccc
      241 gaggggccgg atctggtgga tcaccacgct gcgcgcgtat cccgtcgcgc cggcgcaaag
      301 gcgtagcagt ccaggggcag gggtccatgt cgttcagccg ccgggtgctc cacatggacc
      361 cctgcccctg ccccgcttcg agcacgctcg ccgacgcgac gggatacccg cactcaccat
      421 cgtcctgcgg cacgccaaca ctccacatac gaccgccctt aagcctggcg tgccccttgc
      481 gtgcccgttc tcacggccac cagcggtcaa tcacggtcac ttcgatcatc tgtcgccggg
      541 tacccgcagg tcagcatttt gctggtcagg gccatgatcc atccccgatc ttccaagctg
      601 gccatacggg ttcgattccc ctcgcccgct ctgcgcgttc ttcttgggga cagcttgctc
      661 cgtcgatgtg gacattgttc gccggtgttt ggtgctaggt gagcgcgagg atctggtcga
      721 tggtgggctg ggaaaaggac tcggcggacg catggtctgg gcctagcagc atcgtgaggt
      781 ggggtccgcc gagcaccggg tcggtcggcc agatggtgtt gtaggcccgt cgtcgggcgg
      841 caccagcggg ggtgaacgtg gccgcgagat cggttcttag ttgagctgtt atgcgcaatc
      901 ggcgcatccg ctcccggcgt tcgtcgccgt agccggcgaa ggctgctggg gaccagttcg
      961 actcagtgcg caggatgtcg gtgacgattc cgacgtcgcg gatcgcgatg gagaggccct
     1021 gaccgatgat cgggtcgttc cagccggcgg cgtcgccgat cagcacgacc ccaggcccgt
     1081 agggctggtt ggtccaagtg tcattcatcg gatagaaggc gcagggcctg accgggcggg
     1141 cggcaccgaa catctcgctg tttgggatgc aacggaagcc aaaggcggcg aggaattccg
     1201 cctgccgatc tgggccggtg aaacggccct tctgggcgat gtcgtgcagt aggtatagcc
     1261 gcaccagtcc gttgccccgt ggaaagacga agtagagcag ctcgtcctcg gtgccgaccg
     1321 agaactggtt ggccggccag gcttgcaggc catcgacgag catcccgcca cacatggtgc
     1381 gcggtatcgt gcgatgcagc tcgatgccca gccggcggcg gaccgtggac atccgcccgt
     1441 ctgcaccgac cagcagccgg cagcgctgct cgtaaatgat gtcgtcgtgc tcatagcgca
     1501 ccatcggcgc gttacccagc tcgagatcaa cttccccgat accgcggatg acggtcgcgc
     1561 cggctgcttc tgcagcctgg ttcagcgcct cgcaggcctc ggggtgaccc acgtgcagaa
     1621 cacccggcac accgggcagg attccgtcca gcgggggcac ggctgcctcc gcctgcgctg
     1681 ggtcggtcac ctcgtcgtag ggcaccgccc gcgtcacgta gcagccgccc gcgtccagca
     1741 gtgccttctc caggttgagc cggagcagct cggctacgcc ccagcaggcc atccactcgc
     1801 cgcgcacctt gtcccgatag gtggtctgac gttccagtac gacgacttgg tagccgtccc
     1861 tggccatcac ggtggccaac gccgacccgg cgatcccacc acccacgacg actacatcaa
     1921 ccgattcgct catctctgtt tccccacctg ctgggtcacc gtggattctg caccggtacc
     1981 gcgggtctta ccgtttgcgc caccgcactg ggccacgctg cgtattctgc gttgtcacga
     2041 caaggtagag agtcccaact tcaaccacca gatacattaa ctctgacctg gatctttacc
     2101 ctattactgc tgagagtaga ggcctgcgta aaccaaccgt ccagcaggac gcgttgacgg
     2161 gttgccacac gaacccagca cgcaagatga tctgtaaccg cgaagtggcg gaagaagtac
     2221 caccgctagc tagcacacca tcgcgcaagg cgacacgggc agcacggcca ccaacccaga
     2281 tggctatcct cacgccccac ccacgactgc ctgggaggtc gagacgaaga gcaccgtcgc
     2341 ggctgactcg atgaccgcgg ttgaccgcga cgaacagcaa cagaccaccc ttgaccacca
     2401 acaacactgc acgtccacgg gccgcaccac ccgacgagga cgttgctcac tcctgttcat
     2461 cacaagccct ccgccctctc cggtcgagga cgcagaccaa cttatctggt cgagcacgtg
     2521 ccccccgcat gcccgtactc agagtcataa ggggtcaaca gcggtcactc gggtcatttg
     2581 gcccctatcc ccgcagatca gctcagtgca gctcagagcc atgatcgctg cccgatcctc
     2641 caagctggcc atgccggttc gatcccggtc gcccgctcca ctcgatctac cagccgatac
     2701 ggcgactcct cccgatcatg agaagggtcc acctccgctg taacgctacg tccagccgtc
     2761 gtgcgtctcg tgctcgaact catcgaaggt ggcgagcttg ccgttgtgaa gcgtcgtcca
     2821 gtgcaccagc ggtccatcga tggtcttgcc gttactcctg atggtggcga ggtagtcgac
     2881 ccagacgact acgacgtcac cttcagcgac gatcgtgcgc acgtcaaact tgttgatgtc
     2941 gagggtgtcc gccaccaccg tgaagaagtc ccaaatccca tcctggccgt ggaacacacc
     3001 actggtcggt gacgctggga agctgtgatt ggtccagacg acgtcctcgg ccaaggagtc
     3061 gatgactgcc tcgatgtcgc cccgtccgaa ggccgcatag gcgtcgacaa cgatctgccg
     3121 gttctcctca tcactcataa ttcctcctat tctcgcgccg gaatgctgcg aacctaagcc
     3181 tgcttgcagc ggacgccaac ggatattcca acggcttcag gacacttcag cccaggaggc
     3241 accagggtgc tcatcaagca atttacggag ctgctccgcg gtggcgcgta cgtcacgttt
     3301 ctaacgccgt gcgtagtctt cggggctgcg cgccgtatca agccgtatca agctgtgtga
     3361 gcacccacac ccggatcagc acagtgggct gtacgtcacg ctccgccgcc agctggcgca
     3421 attcctcgat ccgatccacc ggaattcgaa cgctatagac cgccgtcggg cttctcaccg
     3481 gctcccgatg ccgcgtcc
//
LOCUS       DASVXZ010000926         3631 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_621250, whole genome shotgun sequence.
ACCESSION   DASVXZ010000926 DASVXZ010000000
VERSION     DASVXZ010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621250"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1248
                     /locus_tag="VF788_19425"
     CDS             <1..1248
                     /locus_tag="VF788_19425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015788127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX8936303.1"
                     /translation="ITSAEHDVTDNIMHLVLARPEGPGINPAPGTKGLSLFLVPKYHF
                     DTDTGELGARNGAFVTGVEHKMGLKASATCELTFGAHGTPAVGWLLGDAHNGIAQMFQ
                     VIEYARMMVGTKAIATLSSGYLNALEYAKQRVQGADITQMQDKTAARVTIIHHPDVRR
                     MLMLQKVYAEGLRALYLYTACYQDTVELGGDDATMAARVNDLLLPVVKAVGSERAYEM
                     LTLSLQTLGGSGFLQDYPIEQYIRDSKIDSLYEGTTAIQSQDFFFRKIVRDGGQAIGH
                     LNSEIQAFLSAGGGNGRLKEERVLLATALGDLQAMLNAMIGFLMSAQQDPRDTYKVAQ
                     QTVRLLMSTGDVLIGWLLLRQAEVALSGLTTEMTPRDADFYQGKVAAASFFARNVLPE
                     LTARRAIVEATDNSLMDIPEAAF"
     gene            complement(1273..3054)
                     /locus_tag="VF788_19430"
     CDS             complement(1273..3054)
                     /locus_tag="VF788_19430"
                     /inference="COORDINATES: protein motif:HMM:NF016202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanW family protein"
                     /protein_id="HEX8936304.1"
                     /translation="MTPPENSAPPEASTLFDELARTGSEPTTEIPTSPRREGQALRRT
                     VIIAAVALGLLVVFYGIDVAMSSGDVPRGVTVAGVQVGGMARSTAEQRLREQLEPRLS
                     HPIAVQAGDVNVTLDPRRSGLVLDWGATLDQAGKQPRNPWARLASLWRTREVGVISSE
                     DRAALTAALQELRAQTDREPVEGTIRFEGARPLAVEPRVGQHLDIPAATELILARWIG
                     GDTVRVPVMTQPVRTTAGGIQAALHDVVEPAVAAPVKITGDGQDAVLTPEVIAAALRF
                     APDSRGGLTTTIDNPTVVAALNPQLASTQRPGKNAEILIQGAVPVVLPSVDGRGIDWA
                     ASLLPLLNVLHNTGAGRTLAANYVTSPPTLSTEQANALGITTQISTFTTGGFAADSGQ
                     NIRRVAEQVNGAIVRPRETFSLNGYTGPRNAATGYVDAGIIDHGRPSRGIGGGISQFA
                     TTIYNAAYFAGMTDVEHKEHSYYISRYPAAREATVFEGAIDVKFRDDSPTGILIQTAW
                     TPTNVTVTFWGTKHVNVESITGPHTDFTDPQTETIHGQPCSATPGARGFTVTDTRVIR
                     DSTTQAELSRHTRKVKYDPIPHVICEP"
     gene            complement(3051..3344)
                     /locus_tag="VF788_19435"
     CDS             complement(3051..3344)
                     /locus_tag="VF788_19435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020669243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEX8936305.1"
                     /translation="MLHDRVIVRLVGEDGERRSSGGILIPATAQVAKRLSWGEVYGVG
                     NHVRTVQVGDRVLFNPDDQYEVEVRGCAYLVMRERDLQAVASERTEHGTGLYL"
BASE COUNT          593 a         1140 c         1244 g          654 t
ORIGIN      
        1 atcacctcgg ccgaacacga tgttaccgac aacatcatgc atctggtgct ggccaggccg
       61 gaagggccgg gcatcaaccc ggctccagga accaaaggct tgtcgttgtt cctggtaccg
      121 aagtatcact tcgacaccga cactggcgag cttggtgccc gtaatggtgc gtttgtgact
      181 ggcgtcgagc acaagatggg tctcaaggcc tccgccacct gcgagctgac cttcggcgcg
      241 cacggcacgc ctgcggtcgg ctggctactc ggcgacgcgc acaacggcat cgcgcagatg
      301 ttccaggtca tcgagtacgc ccggatgatg gtcggcacca aggcgattgc aactctctcc
      361 agcggctacc tcaacgcact ggagtatgcc aagcagcggg tgcagggcgc tgacatcacg
      421 cagatgcagg ataagacagc cgcgcgagtg accattattc atcaccctga tgtgcgccgg
      481 atgctcatgt tgcagaaggt ctatgccgag ggactgcgcg ccctgtacct ctacaccgcc
      541 tgctatcagg acaccgtcga actcggtggc gatgatgcca cgatggcggc gcgggtcaat
      601 gatctgctgc tgcccgtcgt caaggcggtg ggctctgagc gggcgtacga aatgctcacc
      661 ctgtccctgc agaccctggg gggctcgggc ttcctgcagg actatccgat cgagcagtac
      721 atccgtgact ccaagatcga cagtttgtac gagggcacca cggccatcca gtcccaggac
      781 ttcttcttcc gcaagatcgt ccgggacggc ggtcaagcga tcggccacct gaacagcgaa
      841 atccaggcct tcctatccgc gggcggtggt aacggccggc tcaaggagga gcgggtgttg
      901 ctggccaccg cgctcggtga cctgcaggcg atgctcaatg ccatgatcgg ctttctgatg
      961 tccgctcagc aggatccgcg cgacacctac aaggtcgccc aacagaccgt gcgcctgttg
     1021 atgagcactg gcgatgtgct gatcggctgg ctgctgttgc gtcaggccga ggtggcgttg
     1081 agcggcctga ctaccgagat gactccccgg gacgccgact tctaccaagg caaggtggcc
     1141 gctgcgagct tcttcgcccg caacgttctg cctgaactca ccgcccgccg cgccatcgtc
     1201 gaggcgacgg acaactccct catggatatc cccgaagccg ccttctgaat gcggagatag
     1261 gggcggggcg gatcagggtt cgcagatgac gtgcgggata gggtcgtact tcactttgcg
     1321 ggtgtggcgg gagagttcgg cttgggtggt ggagtcacgg atcacccggg tatcggtgac
     1381 ggtgaagccg cgggctccgg gcgtggcact gcacggctgg ccgtggatcg tctcggtctg
     1441 agggtcggtg aagtcggtgt gcgggccggt gatcgactcg acattgacgt gcttggtgcc
     1501 ccagaacgtc acggtgacgt tggtcggggt ccacgcggtc tgaatgagga tgccggtggg
     1561 ggagtcgtcc cggaatttga cgtcgatggc gccctcgaac acggtagctt cccgggccgc
     1621 cgggtagcgg ctgatgtagt aactgtgttc tttgtgctcc acgtcggtca tgccggcgaa
     1681 gtacgcggcg ttatagatcg tggtggcgaa ctgagagatg ccgccgccga tgccccggct
     1741 gggacgaccg tgatcaatga tgccggcatc cacgtatccg gtggcggcat tgcgcggtcc
     1801 ggtatagccg ttgaggctga acgtctctcg cggccgcacg atcgcgccgt tgacctgctc
     1861 ggcgacccgg cggatgttct gcccggaatc ggcagcgaac ccaccggtag tgaacgtgct
     1921 gatctgggtg gtgatgccga gcgcgttggc ctgctcggtg ctcagcgtcg gaggcgaggt
     1981 gacatagttg gcggccagcg tgcgccccgc accggtgttg tgcagcacgt tgagcagggg
     2041 tagcaggctg gcggcccaat cgatgccgcg tccatcgacc gagggcagca cgaccggcac
     2101 ggcgccctgg atcaggatct cggcgttctt acctggccgc tgggtcgacg ccagctgcgg
     2161 gttgagcgcg gcgaccaccg tgggattgtc gatcgtggtg gtgaggccac cccggctgtc
     2221 gggcgcgaac cgcaatgctg cggcgatgac ttccggtgtg agcacggcgt cctggccgtc
     2281 accggtgatc ttgaccggtg cggcgaccgc aggctcgaca acgtcgtgca atgcggcctg
     2341 gatcccgccg gcggtcgtgc gcaccggctg tgtcatcacc ggaacgcgca ccgtatcgcc
     2401 gccgatccac cgcgcgagaa tgagctcggt cgcggcgggg atgtccagat gctggccgac
     2461 ccgtggttcg accgcgagcg gccgggcgcc ttcgaagcgg atggtcccct cgacgggttc
     2521 ccggtcggtc tgggcccgca gctcctgcag cgctgcggtg agagctgcgc ggtcctcgga
     2581 actgatcacg cccacttcgc gggtccgcca cagcgaggcg aggcgggccc acgggttgcg
     2641 gggttgcttg ccggcttggt cgagggtggc gccccagtcc aggacgagtc cggagcgccg
     2701 ggggtccagg gtgacgttga cgtcaccggc ttgcaccgcg atcggatggc tcagccgtgg
     2761 ttcgagctgc tcacgcagcc gctgctcggc cgtggaccgc gccatcccgc cgacctggac
     2821 gcccgcgacg gtgacgccgc gggggacatc accggaggac atggcgacgt cgatgccata
     2881 aaacaccacc agcagtccga gcgcgacagc cgcgatgatc acggtgcggc gcagtgcttg
     2941 accctcgcgg cgcggtgatg tcgggatttc ggtggtgggc tcggaaccgg tccgggcgag
     3001 ctcgtcgaac agtgtcgacg cctcgggtgg tgccgaattc tcaggtggtg tcacagatac
     3061 aggcctgtcc cgtgctctgt gcgctcgctt gccaccgcct gcaggtcccg ttcgcgcata
     3121 acgaggtatg cgcatccgcg gacctcgacc tcgtactggt cgtccgggtt gaacagcacc
     3181 cggtcaccga cctgcacagt gcggacgtga ttaccgacgc cgtacacctc accccagctc
     3241 aaccgcttcg ctacctgagc cgtcgctgga atcaggattc ccccgctact gcgccgctct
     3301 ccgtcctcgc ccacgaggcg cacgatcacg cggtcgtgga gcatctggat ctcgagcttg
     3361 ctttcgggca ccgcaagagg gtacgtgctg ccttcggcgg tgctcggtac ggcccgtatc
     3421 tcggcactac cgggagacct tggtgctaac cggagacgca gcggaggaat ctgaaccgca
     3481 gggctggcgc gggaaatggc gcggccttta gagcaggccg gacgtaagag gccccgtgag
     3541 gctgccgggt cgggggtcca acagcatcac ggggctatca atgtcatcgc agccccccac
     3601 gacgctgtta catgaccccg gcggcttgac a
//
LOCUS       DASVXZ010000927         2761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_621601, whole genome shotgun sequence.
ACCESSION   DASVXZ010000927 DASVXZ010000000
VERSION     DASVXZ010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621601"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1607
                     /locus_tag="VF788_19440"
     CDS             <1..1607
                     /locus_tag="VF788_19440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018685672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HEX8936306.1"
                     /translation="GVTDPYVAGIGGGGYLVYYDARTHQVSTIDGRETAPGADGPSMF
                     LDPVSGKPLSYPVAVTSGLSVGVPGTLATWQRALQRWGRYGLAEDLQPAEQVAERGFV
                     VDATFREQTRQNAKRFAQFGSTANLFLPGGALPAVGSTLRNPDLAKTYREIGERGIGA
                     LYGGPIGADLVTAVQHPPLAPGATLVARPGPMTLSDLRAYQTLDADPTHVTYRGLDVY
                     GMAPSSSGGITDGEALNILSNFELSAMNRVQALHHYLEATRLAFADRNRYLGDSRYLD
                     VPQQQLLSLSFGRQRACLIDPAKASTSPVPPGELVAESRACTPAGAAVTVPDREHHTN
                     HFVVTDGTGNIVSYTNTLEEWGGSGIVVPGRGFLLNNELTDFNFAPTQGSAPDPNLPA
                     PGKRPRSSMSPTIVLKNGQPFLAVGSPGGTTIITTVLQILINRIDLGMTLPDAIAAPR
                     ASQRNTPTTQVEPAFLAASTTRDLQALGHKFTISDTSSLDPTIKISPDIGIASGLEFL
                     PDGTVLAAGERARRGGSAAGVVFPTP"
     gene            2078..>2761
                     /locus_tag="VF788_19445"
     CDS             2078..>2761
                     /locus_tag="VF788_19445"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX8936307.1"
                     /translation="MRDGEFPGEMYDVVVVGGGPAGLSAATWLARYRRSVLVIDSHEY
                     RNRWTAQSHGYLGSDPADPMALLATARAQLSRYPSVVLCDGAATTARRDEQGRFVVGV
                     GNEEFVALRMILATGVVDQFPEVTGFFDYYGVSVFHCPTCDGYEAKDRTVVVFGWSES
                     VTGFALELLDWARRITILTQGRCFEGDEGDRQVLADHGIALIEDDAVELVGQPGRLQA
                     VRLRSGASID"
BASE COUNT          461 a          948 c          895 g          457 t
ORIGIN      
        1 tgggcgtcac cgacccctac gtcgcgggca tcggcggcgg cggctacctc gtctattacg
       61 acgcgcgcac ccatcaggtg tccacgatcg atgggcggga aaccgctcca ggcgccgatg
      121 ggccgtcgat gttcctggac ccggtgagcg gaaaaccact gtcttacccg gtcgcggtca
      181 ccagcggact gtccgttggc gtgcctggca cgctggccac ctggcagcgg gcgttgcagc
      241 ggtggggtcg ctacggactc gccgaggacc tgcagccggc cgagcaggtc gctgagcgcg
      301 gcttcgtggt cgatgcgacg ttccgggaac agacgcggca gaacgccaag cgcttcgccc
      361 agttcggctc gacggcgaac ctgttcctgc ccggcggcgc gctgcccgcg gtgggttcga
      421 cgttgcgcaa tcccgacctc gccaagacct accgggagat cggcgagcgc gggatcgggg
      481 cgctctacgg cggcccgatc ggcgccgacc tggtcaccgc cgtacagcac ccaccgctgg
      541 ctcccggcgc cacgctggtg gcaagacccg gcccgatgac cctgtccgac ctgcgtgcct
      601 accaaacgct ggacgccgac ccaacgcacg tgacctaccg cggcctggac gtgtacggca
      661 tggcgccctc ctccagcggc ggcatcaccg acggcgaggc actcaacatc ctgagcaact
      721 ttgagttgtc cgcgatgaac agggtgcagg ccctgcacca ttacctggag gccacccgac
      781 tcgccttcgc cgaccgtaac cgctatctcg gcgactcccg ctacctggac gtaccccagc
      841 agcaactgct ctcgctgtcc ttcggccgtc aacgcgcctg cctcatcgac cccgccaaag
      901 ccagcaccag cccggtgccg ccgggcgagc tggtcgccga gtcgcgcgcc tgcacaccgg
      961 ccggcgcggc ggtcacggtg cccgaccggg aacaccacac caaccacttc gtggtcaccg
     1021 acggtacggg caacatcgtg tcctacacca acactctcga ggagtggggc ggcagcggca
     1081 tcgtggtacc tggtcgaggg ttcctgctca acaacgagct gaccgacttc aacttcgcgc
     1141 cgacacaggg cagcgcaccc gatcccaacc tgccagcgcc cggcaagcgg ccacgctcaa
     1201 gcatgtcgcc aaccatcgtg ctcaaaaatg gccagccgtt cctcgccgtc ggctcgccag
     1261 gtggtaccac gatcatcacc acggtgctgc agatcctgat caaccggatc gacctcggca
     1321 tgaccctgcc agacgcgatc gccgcgcccc gcgcctcgca acgcaacacc ccaaccaccc
     1381 aggtcgagcc ggcgttcctc gcagcgtcca cgacgcgtga cctgcaagcg ctcgggcaca
     1441 aattcacaat tagcgacacc tcttctttag atcccacgat caaaatcagc ccggatatcg
     1501 gaatcgcttc gggcctggag ttccttcccg atggcaccgt gctcgccgcc ggagagcgag
     1561 cccgacgcgg tggcagcgca gccggcgtcg tcttccccac cccctgacat ctccgtggca
     1621 acatcgtcgg actgcacctc gccactgtcc gacgatggca ccaacgtctg cgtttcacag
     1681 tcagcgtcct gtgaacggct ggcgaggact tccgcgcctc gagcatggtt cgtatgcccg
     1741 tagagtggga gcgggcggtg aaacgcaccg ggtcggtcag tctggctcag gacgcggcgt
     1801 aagaggtcga tgtcagccat gatcgtccgg gctcgcgtgc ggcaggctta cgtttagggg
     1861 caccgggtac tcaagcgcct gtcatgagcg tcaacgatgc gcgtgtgcct gcgcgagccg
     1921 cccccgatcg cgcggacgag gccgacgtta gccggcatgt aacatcgtcc gacgctcctg
     1981 accaaggctg cggaacgagc tgacgccctg gtgagccgcg gtgctggatc tcatggcctg
     2041 agggtggatg ggcacacaga ggagtggaca cgtggcgatg cgtgacgggg agtttccggg
     2101 cgagatgtat gacgtcgtcg tagtaggagg gggtcccgcc ggcctcagcg cggcgacttg
     2161 gctggcgcgt taccggcgtt cggtgctcgt gatcgacagc cacgagtacc gcaaccgctg
     2221 gacggcgcag tcccatggtt acctcggcag cgacccggcc gatcccatgg cgctgcttgc
     2281 cacggcgaga gcgcagttga gccggtatcc cagcgtcgtg ctttgtgacg gtgcagcaac
     2341 gaccgcgcga cgtgacgagc agggtcgctt cgtcgtcggc gtgggcaatg aagagttcgt
     2401 cgccctgcgc atgatccttg ccactggcgt ggttgaccag ttccctgagg tgactggctt
     2461 tttcgactat tacggcgtca gcgtgtttca ttgcccgact tgcgacggtt atgaggccaa
     2521 ggaccgcacg gtcgtcgtgt tcggctggag cgagtcggtt accggtttcg ccctggagct
     2581 gctcgactgg gcccggcgca tcacgatcct cacccagggg cggtgtttcg agggcgacga
     2641 gggtgatcgg caggtactcg cggaccatgg catcgctctg atcgaggacg atgcggtcga
     2701 gctggtaggt cagcccgggc ggttacaggc ggtccggctg cgcagcgggg ccagcatcga
     2761 c
//
LOCUS       DASVXZ010000928         5092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1317909, whole genome shotgun sequence.
ACCESSION   DASVXZ010000928 DASVXZ010000000
VERSION     DASVXZ010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1317909"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VF788_19450"
     CDS             <1..190
                     /locus_tag="VF788_19450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936308.1"
                     /translation="VGVVGLTAGASAPPRLVEAVVATLVGGSWTAGSAGGGPVRVVER
                     ETTREDIRFTLPLAVRRS"
     gene            187..1980
                     /locus_tag="VF788_19455"
     CDS             187..1980
                     /locus_tag="VF788_19455"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015103446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEX8936309.1"
                     /translation="MSLLSRISSPADLKRLSVVTLRALAQEIRAFLIDKISGLGGHLG
                     SNLGVVELTIAVHRVFTSPRDVLLFDTGHQAYVHKILTGRRDELSSLRQAGGLSGYPS
                     RTESVHDVIENSHASTALCYADGLAKAFALRGAADRRIVAIVGDGALTGGMCWEALNN
                     LGVASGRPVIIVLNDNGRSYSPTVGGLARHLAELRRGEVNHHTLFEGLGLAYLGPVDG
                     HDIAELENVLQRADELHRPVVVHCITRKGKGYSPAEQDDTDHLHTVGVIDPGTGRPRR
                     AGRPTWTSVFAEEIATIGTEREDVVCVTAAMLHPTGLGEFAARFPDRVFDVGIVEQHA
                     VTSAAGLAIGGLHPVVALYATFAGRAFDQLLMDVALHQLPVTIVLDRAGITGPDGPSH
                     HGMWDASVLPVVPGLRLAAPRDCTRLRDLLREALDVTDGPTVIRYPKATAGPDIPAIS
                     RIGPCEILRDDPAAVGLLVAVGALAGPCLAAAEELAAHDVPVTVVDPRWIAPVDLALL
                     KLASAHRLVLTVEETTTNGALGARIAQALAAAGADTCAATFALPPRFLPHATRDQLLR
                     AHGLDATGIATAVLKRLATTHRGKVTARSQG"
     gene            1977..3191
                     /locus_tag="VF788_19460"
     CDS             1977..3191
                     /locus_tag="VF788_19460"
                     /inference="COORDINATES: protein motif:HMM:NF025389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4239 domain-containing protein"
                     /protein_id="HEX8936310.1"
                     /translation="MTLYLLNHFPTVGLVLLIVGGTTALAIVVTIVVHKLFPNLADSR
                     FEELTGIMRADVFALLYTIVLALVISDLSGNLEKASSKVSSEASALSVLTRGVSAFPS
                     EPRKSINSAVNEYSHAVVEDEWPGLRWGEQSPRASAALEDLYATVRTFEPHTPTEQAF
                     YTSAVDNLREITFSRRERIQQSQEGLSPLLRFLLIIGAIVFIVLAYPASVRKLGTRIA
                     IVGAVSAFVSFAYLLTMVLDYPFAGDVSVDTSPYKTGALGKFWVLDSPPRPLASETFE
                     KVAAQDLIGVWSSDNSFGEAVFREVDGEIRAAYRDNKGTVVGALSTDGAFRGWWCAEG
                     SRTPPKDAGEIEWRLLKTPDGERKKLDGRWRYGTEEPWRGGWNLSKLDARSEPPDLAA
                     MFDEPSSFCRHP"
     gene            3216..4355
                     /gene="ispG"
                     /locus_tag="VF788_19465"
                     /gene_synonym="gcpE"
     CDS             3216..4355
                     /gene="ispG"
                     /locus_tag="VF788_19465"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEX8936311.1"
                     /translation="MASVELSMPTPTAVRRRTSRQVTVGSVPVGGGAPVSVQSMTTTR
                     TSDIDATLQQIAELTATGCQIVRVAVPSQDDADALPAIAAKSPIPVIADIHFQPRYVF
                     AALDAGCAAVRVNPGNIKKFDDKVAQIARAALDVGVPIRIGVNAGSLDPRLLAKHGRA
                     TPEALVESALWECSLFEEHGFRDIKISVKHHDPLVMIAAYRQLAARCDYPLHLGVTEA
                     GPLFQGTIKSAVAFGVLLAEGIGDTIRVSLSAPPVEEVKVGSQILESLGLRPRRLEIV
                     SCPSCGRAQVDVYTLAEQVTAAFDGFPVPLRIAVMGCVVNGPGEAREADLGVSSGNGK
                     GQIFVRGKVIKTVPEDQIVETLLDEALHRDWSAPPEQSNTAVTQN"
     gene            complement(4852..>5092)
                     /locus_tag="VF788_19470"
     CDS             complement(4852..>5092)
                     /locus_tag="VF788_19470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010226948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HEX8936312.1"
                     /translation="RARMRWGDHLEFTAEAGPGGFIFVPPFVPHQEINALHDEPLECV
                     VTRSGQEPIVINLDIDGVAEPEHVRWIDPAHPADG"
BASE COUNT          903 a         1756 c         1559 g          874 t
ORIGIN      
        1 ggtcggggtg gtcgggttga ccgctggggc gtcggccccg ccgagactgg tggaagccgt
       61 cgtcgccacc ctcgtcggcg gtagctggac tgccggctca gccggcgggg ggccggtcag
      121 ggtggtcgaa cgcgagacca cccgcgagga catccgattc acgctgcccc ttgcggtgcg
      181 gcgatcatga gcctactgag ccgtatcagc agtccagccg acctcaagag actgtccgtg
      241 gtgacgctgc gcgccctggc gcaggaaatc cgggcgttct tgatcgacaa gatttctggc
      301 ctcggcgggc atctgggatc gaacctgggc gtcgtcgaat tgaccatcgc cgtgcaccgg
      361 gtgttcacct caccccgtga cgtgctgctg ttcgacaccg gacatcaggc ctacgtgcac
      421 aagatcctca ccggccgccg tgacgagctc agttcgctgc gccaagccgg cggcctgtcc
      481 ggctacccgt cccggaccga atccgtgcac gatgtcatcg agaactccca cgcctccact
      541 gccttgtgct acgcagacgg tctggccaaa gccttcgcgc tgcggggcgc agccgaccgg
      601 cggatcgtcg ccatcgtcgg ggatggagcg ctgaccggcg gcatgtgctg ggaagcactc
      661 aacaacctcg gcgtggcctc gggccgaccc gtcatcatcg tgctcaacga caacggtcgt
      721 tcttactcgc cgactgttgg cggcctcgcc cgccacctcg ccgaactacg tcgcggtgaa
      781 gtgaaccatc acaccctgtt cgagggtctc gggctggctt acctcggtcc agtcgatgga
      841 catgacatcg ccgagctcga gaacgttcta caacgagccg acgaactgca ccgccccgtt
      901 gtggtgcact gcattacccg caagggcaag ggctactcgc cagccgagca ggacgacacg
      961 gaccacttgc ataccgtcgg cgtcatcgac cccggcaccg gccggccccg gcgcgcgggc
     1021 aggccaacct ggacctcggt gttcgccgag gaaatcgcca cgatcggcac tgagcgcgag
     1081 gacgtcgtgt gcgtgacggc ggccatgctg caccccaccg gtctgggcga gttcgcggca
     1141 cggttcccgg accgggtgtt cgacgtcggg atcgtcgagc aacacgcggt cacctccgcc
     1201 gccggtctgg ccatcggcgg actgcacccg gttgtcgctc tctacgccac attcgccggc
     1261 cgagccttcg accagctgct catggacgtc gccctgcacc agctacccgt caccatcgtg
     1321 ctcgaccggg ccgggatcac cggaccggac gggccgagcc accacggcat gtgggacgcc
     1381 tccgtcctgc cggtggtgcc cggccttcgc ctggccgcgc cccgagactg cacccggctg
     1441 cgcgacctgc tccgcgaagc cctcgacgtc accgacgggc ccaccgtgat ccgttacccg
     1501 aaagcgaccg cggggccgga cattcccgcc atcagcagga tcgggccgtg cgagattctc
     1561 cgtgacgacc ccgcagccgt gggcttactt gttgcagtcg gagcgctggc gggcccctgc
     1621 ctggcggcgg ctgaggagct cgccgcccat gacgtgccgg tcaccgtggt cgacccacgg
     1681 tggatcgcgc ccgtggacct ggccctgctc aagctggcga gcgcgcaccg cctggtgctc
     1741 accgtcgagg agaccaccac caacggagcg ctcggcgccc ggatagctca ggccctggcc
     1801 gccgccggag cggacacctg cgcggccacc ttcgccctgc caccccgatt cctgccgcac
     1861 gccacccgcg atcagctcct gcgcgcccac ggcctggacg ccaccggcat cgccaccgcc
     1921 gtcctgaagc gactcgccac cacacaccgc gggaaggtca ctgccaggag ccagggatga
     1981 cgctctacct tctcaaccac ttcccgaccg tgggcctggt cctgctcatc gtgggcggca
     2041 cgaccgcact agccatcgtc gtgaccatcg tcgtccacaa actgtttccc aaccttgctg
     2101 attcccgctt cgaagagctg accggaatca tgcgggctga cgtattcgca ctgctctaca
     2161 caatagtctt ggccctggtg atcagtgacc tctccggaaa cctcgagaaa gcctcgtcga
     2221 aggtgtcctc cgaggcgtcc gctctcagcg tgctgacgcg tggcgttagc gcatttcctt
     2281 ccgagcccag gaagtcgata aacagcgctg tcaacgaata ttcccacgct gtcgtcgagg
     2341 acgagtggcc agggctgcgc tggggagagc agagccctcg tgcgtccgcg gcactcgagg
     2401 atctttacgc tacggtaagg accttcgagc cgcacactcc gaccgaacaa gccttttaca
     2461 catcggcggt ggacaacctc cgggagatca ctttcagccg ccgggagcgc atacaacaga
     2521 gccaggaggg actttctccg ttattacggt tcctgctgat catcggcgcg atcgtgttca
     2581 tcgtcttggc ctaccccgcc agcgtgcgaa aactgggcac gcggatagcg atcgtgggag
     2641 cggtctcggc ctttgtgtcc ttcgcctacc tgctgaccat ggtgttggac tatcccttcg
     2701 cgggcgatgt atcggtcgat acctctcctt acaagacagg ggcactcggc aaattctggg
     2761 ttctcgactc ccctccccgt ccgctggcat cggagacgtt cgagaaagtt gcagcgcaag
     2821 accttatcgg ggtgtggtct tcggataact cgttcggcga agccgtcttc cgtgaagtgg
     2881 acggggagat ccgcgccgca taccgcgaca acaagggaac ggtcgtcgga gccctgtcaa
     2941 ccgatggtgc gttccgcggg tggtggtgcg cggaagggtc ccggacaccg ccgaaggacg
     3001 cgggggagat cgaatggcgg ctgctgaaaa cacccgatgg cgagcggaag aaactcgacg
     3061 gccgatggcg ctatgggacc gaggagccct ggagaggagg ctggaacctc tcgaagctcg
     3121 atgcccggtc tgagcccccc gacttggccg ccatgttcga tgaaccctcg tcgttctgcc
     3181 gccacccatg aggcaatcac tgccaaggag atccgatggc atctgttgag ctgagcatgc
     3241 cgaccccgac agctgtgcgg cgccggacat cccgacaagt cacggtcggc agcgtgcccg
     3301 tcggcggcgg agcgccggtc tcggtccagt ccatgaccac cacgcgcacc tccgacatcg
     3361 acgccacgct gcagcagatc gccgagctca ccgcgacggg ttgccagatc gtgcgggtcg
     3421 cggtgcccag ccaggacgat gccgacgcgc tacccgccat cgccgccaaa tcaccgatcc
     3481 cggtcatcgc cgacatccac ttccagcccc ggtacgtctt cgcggccctc gacgccggct
     3541 gcgcagcggt ccgggtcaac cccggaaata tcaagaagtt cgacgacaag gtcgcacaga
     3601 tcgcccgcgc tgccctcgat gtgggcgtgc cgatccgcat cggagtcaat gccggctcgc
     3661 tggatccccg gctgctggcc aagcatggcc gcgccactcc ggaggctctg gtcgaatcgg
     3721 ccctctggga atgttccctg ttcgaagagc acggatttcg cgatatcaag atctccgtca
     3781 aacaccatga cccgcttgtc atgatcgccg cctaccggca actggctgcg cgctgtgact
     3841 acccgttgca cctgggcgtc accgaagccg ggccgctgtt tcagggaacc atcaaatccg
     3901 ccgtcgcctt cggtgtcctg ctggccgaag gcatcggcga caccatccgc gtgtcgctgt
     3961 ccgccccacc cgtcgaggaa gtcaaagtcg gtagccagat cctggaatcc ctcggtctgc
     4021 gaccccgacg cctggagatc gtgtcctgcc cctcctgcgg acgcgcccag gtcgacgtct
     4081 acacactcgc cgaacaggtc accgctgcct tcgacggctt ccccgtccca ttacgcattg
     4141 ccgttatggg ctgcgtagtc aacggcccag gcgaagcgcg cgaggccgat ctcggcgtct
     4201 cctcaggcaa cggcaaaggc cagatcttcg tccgtggcaa ggtcatcaaa actgtccccg
     4261 aagaccagat cgtcgagaca ctgctcgatg aggccctcca cagagactgg tcagctccac
     4321 ctgaacaaag caacactgct gtcacacaaa actgagaacg gcgtaatttg ggaaaacgtt
     4381 actcagacgg atatccatgt gcccagttct ccattcattc ttctttgggc atctgccgtc
     4441 cgggcacgcg tcctgtggat ccacgtcgtt gccgagtttc tgggcggcaa cggacactca
     4501 cggtcacggt tggagaggtg tcacaccgct ccgcacgtga tatcgcagtg agcaagcgca
     4561 taacgccgat gcatgagcgg cgaaatgtaa ctggagcacc gcaaacaagg acgatcacgg
     4621 gcatgtctcc cgcacataca gatgccatat tgcggccaac gatgcgtcct taaaatggac
     4681 aaaagaagtc cgacagtcga gcaggagatg gcgaccaacc ccacaaggac agccaagcgg
     4741 cggtctcgga acatcaccgg gtgcagggtt cgcgcgttcc taagcagtga tcaggtgcag
     4801 gcgccttgcc accggttccc acccgggccg agagccgcat cgctgagggg ttcagccgtc
     4861 cgccgggtgg gccgggtcga tccaccgcac gtgttcgggc tccgctaccc cgtcgatgtc
     4921 cagattgatc acgatcggct cttggccgct tcgggttacc acgcactcga gcggttcgtc
     4981 gtgaagagcg ttgatctcct ggtgcggcac gaacggcggc acgaagatga aacctcccgg
     5041 gccggcttcg gcggtgaact cgaggtggtc gccccaccgc atccgggccc ga
//
LOCUS       DASVXZ010000929         3094 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_800845, whole genome shotgun sequence.
ACCESSION   DASVXZ010000929 DASVXZ010000000
VERSION     DASVXZ010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_800845"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2984)
                     /gene="hrpA"
                     /locus_tag="VF788_19475"
     CDS             complement(<1..2984)
                     /gene="hrpA"
                     /locus_tag="VF788_19475"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017984287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HEX8936313.1"
                     /translation="MADQALHAEAEQRLAARRAAVPAVTYPAQLPVSARREDIAAAIR
                     DHQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAARIAEELGTE
                     LGDAVGWKVRFTDHVGENTLVKLMTDGILLAELAGDKMLRQYDTLIIDEAHERSLNID
                     FVLGYLKQLLPRRPDLKVIITSATIDPERFSQHFGAAPVIEVSGRTYPVEIRYRPFGP
                     DGGEGPDDRDQTQAICDAVTELRHEGPGDILVFLSGEREIRDTRDALHALKLTDTEVL
                     PLYGRLSAAEQHQVFERPGTMGRHTRHQNATRRGGDATRRIVLATNVAETSLTVPGIR
                     YVIDPGTARISRYSRRLKVQRLPIEPISQASAIQRAGRCGRTAEGICVRLYTEQDFQS
                     RPEFTDPEIVRTHLASVILQMAALDLGEVAEFPFIDPPDRRQISDGVALLRELGALQE
                     QPTPRLTRIGRTLAQLPLDPRLARMVVAAQHNGCLGEVLVIAAALSIQDPRERPTDAE
                     AAADAQHARFTTKDSDFLAYLNLWRHLDEQQQALSSTQFRKLCKTEFLHYLRVREWQD
                     LHGQLRRITRGMRMTVNTTRADPQQVHVSLLTGLLSHIGLFDPETRDYLGARGARFAV
                     FPGSALFRKPPRWVMAAELVETSRLWARVAARIEPQWVEPLASHLVKRDYSEPHWERN
                     RGAVVAYEKVTLYGIPIVTSRKVAYGGIDPECSRELFIRHALVAGDWETRHAFFHANR
                     ALLDDVDELEQRARRRDIAVDDETLFDFYDQRLPADIVSARHFDSWWRKVSKTQPTVL
                     DFDPTMLIAGAGVSKDDYPDRWYQGALALDLSYQFAPGADADGVTVHVPLQLLNQIDP
                     APFTWQVAGLREELVVALLKSLPKPLRRQLVPVPDYARALLARITPSLHPIAGSAGVE
                     PLLDALERALAQTGVPVCRADWRLDQLPDHLTITFRVHDGEATLAQGKDLAALTRQLQ
                     PRLRATMSAASGGLERHGLRSW"
BASE COUNT          499 a         1021 c         1078 g          496 t
ORIGIN      
        1 tcccagctgc gcaaaccgtg gcgctccaga ccgccactcg cagcagacat ggtggcccgt
       61 agtcggggct gcagctggcg ggtcagcgct gccaggtcct tgccctgcgc cagggtcgcc
      121 tcgccatcgt gcacccggaa ggtgatcgtc agatgatccg gaagctggtc gagccgccag
      181 tctgcgcgac acaccggaac gcccgtctgg gcgagtgcgc gctccagggc gtccagcaag
      241 ggttcaaccc cggctgagcc ggcaatcgga tgcaggctcg gcgttatccg cgcaaggaga
      301 gccctggcgt agtcggggac cggcaccagc tgacggcgca gcggcttggg caacgacttg
      361 agcagcgcga cgaccaattc ctcccgcagg ccggcgacct gccaggtgaa cggcgcgggg
      421 tcgatctggt tgagcagttg cagcggtacg tgcaccgtca caccgtcggc atcagcaccc
      481 ggcgcgaact ggtaggacag gtccagcgcc agcgcaccct ggtaccagcg atcggggtag
      541 tcgtccttgc tgacgcccgc accggcgatc agcatggtgg ggtcgaagtc gagcacagtc
      601 ggctgggtct tactgacctt gcgccaccag ctgtcgaaat gccgggccga aactatgtcg
      661 gcggggaggc gctgatcgta gaagtcgaac agggtctcgt cgtcgactgc gatgtcccga
      721 cgccgggctc gctgctcgag ttcgtcaaca tcgtcgagca atgcccggtt ggcgtggaag
      781 aaggcatgcc gagtctccca gtcccccgcc acgagcgcgt gccggatgaa cagctcgcgg
      841 gagcactcgg ggtcgatgcc cccgtaggca accttgcggg aggtcacaat cgggatgccg
      901 tagagcgtga ccttttcgta ggcgaccacc gcgccacggt tgcgttccca atgcggctcg
      961 ctgtaatcgc gcttgaccag gtgagaggcc agcggttcca cccattgagg ttcgatccgt
     1021 gcggccaccc gggcccacaa ccgggaggtt tccaccagct cagcggccat cacccagcga
     1081 ggtggcttgc gaaacagcgc ggatccaggg aacaccgcga accgggcacc gcgagcgccg
     1141 aggtagtcac gggtctccgg atcgaacagc ccgatatgcg agagcagccc cgtcagcagg
     1201 ctgacgtgca cctgctgcgg gtctgcgcgc gtggtgttca ccgtcatccg catcccgcgg
     1261 gtgatccggc gcagttgtcc gtgcaggtcc tgccactcac gcacccgcag gtaatgcagg
     1321 aattccgttt tgcacagctt gcggaactgg gtagatgaca acgcctgctg ctgctcgtca
     1381 aggtggcgcc acaggttgag gtaggcgagg aagtcggagt ccttggtggt gaatcgggcg
     1441 tgttgggcat cggcggccgc ctcggcatcg gtcggtcgtt cccgcggatc ttgaatggac
     1501 agcgccgcag caatcaccag cacctcacct aggcagccgt tgtgctgagc ggccaccacc
     1561 atccgcgcca accgggggtc caggggcagt tgcgccaggg tgcggccgat ccgggtgagc
     1621 cggggagtgg gctgctcctg aagagccccc aattcgcgta gcagcgccac gccgtcggag
     1681 atctgccggc gatccggtgg gtcgatgaac gggaactccg ccacctcacc cagatcaagc
     1741 gccgccatct gcaggatcac cgacgcgagg tgggtgcgca cgatctccgg atcagtgaac
     1801 tcaggacggg attggaagtc ctgctcggta tacaaccgga cgcaaatgcc ttccgccgtg
     1861 cgcccgcacc tcccggcacg ctggatcgcc gaggcctgcg aaatgggctc gatcggcagc
     1921 cgctgcacct tgagccggcg gctgtatcgc gagatccggg ccgtccccgg atcgatcaca
     1981 taccggatcc ccggcacggt caacgacgtc tctgccacat tggtcgccaa cacgatccgc
     2041 cgtgtcgcgt cccctccccg gcgtgtcgcg ttctgatgcc tggtgtgtcg gcccatagtg
     2101 cccggccgct cgaagacctg gtgctgttcg gccgctgaca accgcccgta cagcggcagg
     2161 acctcggtgt cggtgagctt caacgcgtgc aaggcgtcgc gggtgtcacg gatctcccgc
     2221 tcaccggaga ggaacaccag gatgtcaccg ggaccttcgt ggcgcagctc ggtcaccgca
     2281 tcgcagatcg cctgggtctg gtcgcggtcg tcggggccct cgccgccatc cgggccgaaa
     2341 gggcggtagc ggatctccac cggataggtg cggcccgaca cctcgatcac cggtgcagcg
     2401 ccgaagtgct gcgagaaccg ttcgggatcg atagtcgccg aggtgatgat caccttgagg
     2461 tcggggcggc gcgggagcaa ctgcttgagg tatcccaata cgaagtcgat gttcagcgag
     2521 cgctcgtgcg cctcgtcaat gatcagcgtg tcgtactggc gcagcatctt gtcgcccgcc
     2581 agctcggcga gcaggatgcc gtcggtcatg agcttgacca gggtgttctc gccgacgtgg
     2641 tcggtgaagc gcaccttcca gccgacggcg tcgcccagct cggtgcccag ctcctcggcg
     2701 atccgggcgg cgacggtgcg ggcggcgagc cggcggggct gggtgtggcc gatcagcccg
     2761 cgcacgcccc ggcccagctc caggcagatc ttggggatct gggtcgtctt cccggagccg
     2821 gtctcgcccg cgacgatcac gacctggtgg tcgcggatcg cggcggcgat gtcctcgcgg
     2881 cgggcggaga cggggagctg cgcggggtag gtcaccgccg ggacggcggc gcggcgggcg
     2941 gcgaggcgct gctcggcctc ggcgtgaagg gcctgatcgg ccacacccag ccgcgccggc
     3001 tggccgcccg tacggtcgcc gagcgcatcg ccgaggagct cgggcggccg ctgggctcga
     3061 cggtgggcta taaggtgcgc ttcaccgacc aggt
//
LOCUS       DASVXZ010000930         2626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1698731, whole genome shotgun sequence.
ACCESSION   DASVXZ010000930 DASVXZ010000000
VERSION     DASVXZ010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1698731"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..819
                     /locus_tag="VF788_19480"
     CDS             <1..819
                     /locus_tag="VF788_19480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936314.1"
                     /translation="KAYGGSADMLTPVASHAERLLPVPASEAIKKDLVVAIAELHTTA
                     GWAAFDARQDKTASYHFARAMELGADADDGFAFSKAAYLAGVATAERGHYNDGLKLLQ
                     LARISLDSVPTTPRTRELTSWVAADSADVLARMDQVAAARSELAATRESWRASNADDQ
                     ADMAWVTALVELTLGRLDMAERLVAASSRHWEGTADHRQAVLGSITQAVIHVRAGEPR
                     AHELAHRAITAVAELRSARARDRLASLAAELESRRGTAAWRLAGLARRVMATPA"
     gene            complement(901..1371)
                     /locus_tag="VF788_19485"
     CDS             complement(901..1371)
                     /locus_tag="VF788_19485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936315.1"
                     /translation="MTQAKQTDFARYADISEAEQKILEEALASIPEDILSIGERPPIE
                     SRIRNRLDREGLLTASGPLGMGDIPAVAFVGRAVSCLASSYVTLRGIGHNKPSSTVAE
                     SIAKALGDCVQGDTDAVKSDILKCRDQVAGALRALGLPALGDALLGDDEHTVRY"
     gene            1517..2113
                     /locus_tag="VF788_19490"
     CDS             1517..2113
                     /locus_tag="VF788_19490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010224465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936316.1"
                     /translation="MTSPMLVSRFYVRQKITIMVNRYQIFGANPDGSEGSLLAFAQQK
                     RMAFREQVTFYTDESKSQPMFSFKARQRLDVHAEHDVFDERGTPLGYFRKDFGASLLR
                     STWHLSAPGLEAIGRERRLGIAILRRVWDFIPYLGDIWVPFVFHFDFTEKTTGQLVLT
                     SERQKTIRDRYTVTVLDPRLDFRVAASMAVALDALQSR"
     gene            complement(2213..2560)
                     /locus_tag="VF788_19495"
     CDS             complement(2213..2560)
                     /locus_tag="VF788_19495"
                     /inference="COORDINATES: protein motif:HMM:NF018447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEX8936317.1"
                     /translation="MTRTSRLLARIGMAAAAMTAPLVFVAPALAGPARQDPWDRVAMC
                     ESGGNWNANTGNGYYGGLQFSHGTWRSFGGGAFAGTADQATRSQQVAVAEKVLRAQGW
                     KAWPTCSRRAGLR"
BASE COUNT          444 a          863 c          842 g          477 t
ORIGIN      
        1 aaggcctacg gtggatctgc cgacatgctc acgccggtgg cgtcgcatgc ggagcggttg
       61 ctgccggttc cggcatccga agcgatcaag aaggaccttg tcgtcgccat cgcggaattg
      121 cacacgaccg ccggctgggc ggcattcgat gcgcgccagg ataagacggc gtcataccac
      181 ttcgctcggg cgatggagct cggcgctgat gccgacgacg ggttcgcctt cagcaaggcc
      241 gcctacctgg caggggtagc caccgcggag cgtggccact acaacgacgg gttgaagctg
      301 ctgcagctcg cccggatcag cctggactcg gtgcctacca cgccccggac ccgggagttg
      361 acctcgtggg tagcggccga ctccgctgac gtgctggcgc gcatggatca ggtggccgcg
      421 gcgcgctccg agctggccgc aacgagggag tcctggcggg cgtcgaatgc tgatgatcag
      481 gctgacatgg cttgggtgac ggcgcttgtc gagctgactc tcggccggct cgatatggcg
      541 gagcgactcg tggccgcctc gtcgcggcac tgggagggaa cggcggatca ccggcaagcc
      601 gtcctgggga gcatcaccca ggccgtcatc cacgtgcgcg ctggggagcc ccgtgcgcac
      661 gagctagccc atcgggcgat caccgcagtg gccgaactgc gttcagctcg agcccgcgac
      721 cggctcgcct cactggcagc ggagttggag tcccggcggg gaactgcggc atggcgactg
      781 gctgggctgg cccgacgggt gatggccact ccggcataac agccccgctc gcgaaccata
      841 ctgggcgtcg tgcgcgggtc atcacctccg gctaccgctg tgggagatga tcagctgtgc
      901 tcaataccgc acggtgtgct cgtcgtcccc gaggagtgcg tcccccaacg cagggaggcc
      961 aagcgctcgg agcgcgccgg caacctgatc ccggcatttc aggatgtcgg atttgactgc
     1021 atcggtgtcg ccctgaacac agtctcccag cgccttggcg atcgactcgg caaccgtgct
     1081 ggaaggcttg ttgtggccga tgccacgcaa cgtcacatag ctcgacgcga ggcacgacac
     1141 tgctcggccg acgaaggcca ccgcaggtat atcgcccatc cctaatggac ctgacgcggt
     1201 gagcagcccc tcccggtcca ggcgattgcg gatccgggac tcgatcggcg gccgctcgcc
     1261 aatcgacaga atatcttcag gtattgaggc gagcgcttcc tcgagtattt tctgttctgc
     1321 ctccgaaata tcagcgtacc gagcaaagtc cgtctgtttc gcttgagtca ccgttggctc
     1381 cgtacttctg catccctgac cgattcgctc cggtagttta gcgtacgagg tcatacccga
     1441 gtcctcatac gatcgtccgg ttcggggtag ggccgccgtc tgccaccggt gccccagcgc
     1501 tggcagactc ccctgcatga cgagcccgat gctggtctcc cgcttctatg tccgccagaa
     1561 gatcacgatc atggtcaacc gttaccagat tttcggcgcc aaccccgacg gcagcgaggg
     1621 atccctgttg gcgttcgcgc agcagaagcg gatggcgttc cgggaacagg tgaccttcta
     1681 caccgacgag tcgaagtcgc agccgatgtt ctcattcaag gctcggcagc gcctcgacgt
     1741 gcacgccgaa catgatgtct tcgacgagcg cggcacgccg ctgggctact tccgcaagga
     1801 cttcggtgcc agcctgctgc gctcgacctg gcatctgtcc gcgccggggc tggaagccat
     1861 cggccgggag cgcaggctcg gcatcgcaat cctgcggcga gtatgggatt tcatccctta
     1921 tctcggcgac atctgggtgc cattcgtatt ccacttcgac ttcaccgaga agaccactgg
     1981 acaactggtg cttaccagcg agcggcagaa gaccatccgt gaccgataca ccgtgaccgt
     2041 gctcgatccg cggctggact tccgggttgc ggcgtcgatg gctgttgcgc tggatgcgtt
     2101 gcagtcccgc tgaccgcgcc caatctctct gtggcgtcag acaatgagct ggggagaact
     2161 ggcttgaccc cccgcccgac ctcggcgggg gccaagggcg tgtatccgac cgtcagcgaa
     2221 gcccggccct tctagagcag gttggccaag ccttccaacc ctgcgcgcgg agcacctttt
     2281 cggcgacggc gacctgttgt gaccgggtgg cttggtcggc agtgcccgcg aaggccccgc
     2341 cgccgaatga acgccaagtc ccgtggctga attgtaggcc gccgtagtac ccattgccgg
     2401 tgttagcgtt ccagttacca ccgctttcgc acattgcaac acgatcccac ggatcctggc
     2461 gagccgggcc tgccagggcc ggtgccacga atacgagcgg agcggtcatc gctgccgcag
     2521 ccattccaat acgcgcaagt aatcgggagg tcctcgtcat gtctatgtct ccgtcaacgc
     2581 gcacacagcc gaccgcaggc ctcgcgcgga attcgggtcc gcgtcg
//
LOCUS       DASVXZ010000931         6704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1154722, whole genome shotgun sequence.
ACCESSION   DASVXZ010000931 DASVXZ010000000
VERSION     DASVXZ010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6704
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1154722"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..720)
                     /locus_tag="VF788_19500"
     CDS             complement(<1..720)
                     /locus_tag="VF788_19500"
                     /inference="COORDINATES: protein motif:HMM:NF025126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8936318.1"
                     /translation="MGADGFDLLEAIHADHAPAWLREIPAVIVLRTVWIRQYHRTITD
                     GRQEVAWREDNDLPPSRERICSPYDTDARYATKRGSGWEGYKVHLSETCDDATVTGRP
                     HLITNVATTDATVTDVEMLEHIHTGLDHRNLLPDEHIVDAGYTTCAELMVSTRRDFRI
                     TLLGPLRIDNSPQARTSSGFDRAAFTIDWDNHRVTCPQGVTNTIWSTCTERGRKSIVV
                     RFPAPTCQTCPVRTQCTSSTRT"
     gene            complement(767..1369)
                     /locus_tag="VF788_19505"
     CDS             complement(767..1369)
                     /locus_tag="VF788_19505"
                     /inference="COORDINATES: protein motif:HMM:NF017416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8936319.1"
                     /translation="MSVQPRPWPEVPEQTAAVARAAFPKGTLAMRVRDELPGLFADAQ
                     FVSAFGVRGKPGISPGQLALVTVLQFAENLTDRQAADAVGGRIDWKYALSLELTDPGF
                     DHTVLTGFRQRLIDHGLEERVLDLLLARLAELGVVKAGGRQRTDSTHVLAAVRAVNRL
                     EFLTETLRAALEALSAAAPDWLATHINAPVGATVWRPSRL"
     gene            complement(1549..2964)
                     /locus_tag="VF788_19510"
     CDS             complement(1549..2964)
                     /locus_tag="VF788_19510"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose/sorbosone family PQQ-dependent
                     dehydrogenase"
                     /protein_id="HEX8936320.1"
                     /translation="MCDYGDPVFDVNGKLYVVSGVTICGTEPNESFTFRVLSTGLADP
                     WELLWGLDGFLWVTEKSGKRVVRVNPSDGSKTTVITIPDVYISDRRQDGLLGMALHPG
                     FLAGVENNYVYLAYTYNAHRGGPVDPRAKIARYTYDPATKTLSHPVELITGLPASNAH
                     NAGRLLIGHDQRLYYSTADQENNQGDHFCNPIRAQDLPAADAVSARDWSTYVGKILRL
                     NLDGSIPSDNPVISGVRSHIYSYGHRNPQGLVFAPGGRLFSAEHGPKSDDEINLIQAG
                     KNYGWPYISGFKDDQSYAYANWSASTTPPCPSLKYSDSVIPPSVPQQSETAWSSPDYV
                     EPLKTLYTVPNGYNFQDPACGEPRYICWPSIAPSSIDFVPADNGGIASWHNSLLVTSL
                     KNGSLYRLKLTQDGGSVRGDITQYFKTTNRYRDLALSPDNRTVYIATDSTGLAGPQSG
                     PSTQSLDNPGAILAFTFVTTE"
     gene            complement(3533..4387)
                     /locus_tag="VF788_19515"
     CDS             complement(3533..4387)
                     /locus_tag="VF788_19515"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEX8936321.1"
                     /translation="MCLSGTFHAVHQEADATPARPDGPAGRFSRRAALVGAAAAAATV
                     TMPAACAQTASRRLGTVRDLTHVFRAGFPVYAGDPPGRRTVATIEDTGFYVQTWSFAE
                     HMGTHLDAPGHVVPGGRLVPELDPEEMFAPIAVIGISGRAEQGPDAMVEVGDLRDYER
                     RHGRIPNRAVVCMYSGWERRVHDPAAYRNPSPDGRLHFPGFGLEAVEWLLEQRGILAL
                     GVDTLSLDIGASTDFPVHKRLLGADRYGLENLANLGQIPPRGAEAIVGIVPWEKGSGG
                     PCRVLARW"
     gene            4834..5022
                     /locus_tag="VF788_19520"
     CDS             4834..5022
                     /locus_tag="VF788_19520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936322.1"
                     /translation="MGALAAHHLEQLIAEGGRGFVVCGGAGAVQPQLAQGHVIAPVAA
                     ARDKELISLRPTCSTNRH"
     gene            complement(5149..5808)
                     /locus_tag="VF788_19525"
     CDS             complement(5149..5808)
                     /locus_tag="VF788_19525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019049262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEX8936323.1"
                     /translation="MDVLRAGESLGIDQKLTSSNGKYTLIMQGDGNLVLYTESNAPVW
                     ATRTQSSGAVRASLQDDGNLVLYTKEEERRFRRDVPVAVWASKTSGEKVRLVLQDDRD
                     LVIYTADGRALWSSGTALAGEADAPATEAPAAPTAAPPAPTAAPPAPTAAPPAPTAAP
                     PAPAEAPAKRIYTVVSGDTLWAIAERFYGDGSKYPKIASANGIANPDLIMVGQQLTIP
                     E"
     gene            complement(6343..>6704)
                     /locus_tag="VF788_19530"
     CDS             complement(6343..>6704)
                     /locus_tag="VF788_19530"
                     /inference="COORDINATES: protein motif:HMM:NF039485.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HEX8936324.1"
                     /translation="LLGGGPEDSAGRLLASLLGTLGSGGGESLSGLLSALREGGLGEQ
                     ARSWIGTGPNKGLTGPQVAQALPYQVLEAVARQSSLSPEQVADLLAQALPVVVDKLTP
                     DGSVPEGSLEDLIKQYL"
BASE COUNT         1194 a         2099 c         2135 g         1276 t
ORIGIN      
        1 ggtgcgggtg gaggaggtgc actgcgtacg cactggacag gtctgacatg tcggggcggg
       61 gaagcgcact acgatcgatt ttcggccacg ttcagtgcag gtcgaccaga tcgtgttggt
      121 cacgccctgt gggcaggtca cgcggtggtt gtcccagtcg atggtgaacg cggcgcggtc
      181 gaaaccgcta ctggtccgag cctgcggaga gttgtcgatg cgcagcgggc ccagcagcgt
      241 gatcctgaag tcgcgccggg tgctgaccat cagctcggcg caggtggtgt agccggcatc
      301 cacgatgtgc tcgtcaggga gcaggttgcg gtggtcgagg ccggtgtgga tgtgttccag
      361 catctccacg tcggtgacgg tcgcgtcggt ggtagcgacg ttggtgatga ggtggggccg
      421 gccggtgacg gtggcatcgt cgcaggtctc gctgaggtgg accttgtagc cttcccagcc
      481 ggagccgcgc ttggtggcgt atcgagcgtc ggtgtcatag ggcgagcaga tccgttctct
      541 gctgggcggg agatcgttgt cctcccgcca tgccacctcc tgcctgccgt cggtgatcgt
      601 gcggtggtac tgcctgatcc acacagttcg caggacgatg accgcgggaa tctcccgcag
      661 ccatgctggt gcgtggtcgg catggatagc ctcgagcagg tcaaatccgt cagcgcccac
      721 ctgcacggcc agcttggtgc gcttgtcttc gccttgggga agccgatcag agtcggctcg
      781 ggcgccatac cgttgcaccc actggggcat tgatgtgggt ggccagccag tccggggcgg
      841 ctgcagacag cgcctccaga gctgctcgca gcgtttctgt gaggaactct aagcggttca
      901 ccgcgcgtac cgccgcgagc acatgggtgg aatcagtgcg ctgccgaccg ccagccttga
      961 ccactccgag ctctgcaagt cgggccagca gcagatccag gaccctctcc tccagcccgt
     1021 gatcgataag ccgctgtcgg aacccagtca acaccgtgtg atcgaatccc ggatccgtga
     1081 gttccaggct cagggcgtac ttccagtcga tccgaccccc tacggcgtca gcagcctgcc
     1141 gatcggtcag attctcggcg aactgcagga ccgtgaccag cgctaactgt cccggagaga
     1201 tccctggctt gccccgcacc ccaaacgccg agacaaactg cgcatcggcg aacaatcccg
     1261 gtaactcgtc acgaacccgc atcgccaacg tccctttcgg aaacgccgcc ctggccaccg
     1321 ctgcagtctg ctcgggaacc tccggccacg gacgcggctg gaccgacatc aagacgtccc
     1381 ttccgcgacc gcaaacgaca agacggtcgc acccgggcat cgtccatcaa cacagattaa
     1441 catcgtggga cgtgatcagc gcgccgcaga attaggcaac agagtcgtac agggtgctcg
     1501 acctgttctt tgccgatgca acagtccggc tcatgtccct tcgctggtct actcggtggt
     1561 cacgaaggtg aacgccagaa tcgctccggg attgtcgaga ctctgggtgg agggtccgga
     1621 ctggggtccg gccaggccag tgctgtcggt ggcgatatag actgtgcgat tgtccggact
     1681 gagtgccagg tcccggtagc ggtttgtggt cttgaaatac tgcgtgatat cacctcggac
     1741 cgagccgccg tcctgggtga gcttcaggcg ataaagcgag ccatttttta ggctggtgac
     1801 taaaagagag ttgtgccagc tcgcgatccc gccgttgtct gctggcacga agtcaatact
     1861 ggagggcgcg atcgagggcc agcagatgta gcgcggttca ccgcaggcgg ggtcttggaa
     1921 gttgtatccg ttcgggactg tgtagagcgt tttcaggggc tcgacatagt ccgggctgct
     1981 ccaggcggtc tcactttgct ggggtacgga tggcgggatg acggagtcac tatacttgag
     2041 gctgggacac ggcggtgtgg ttgaggccga ccagttggcg tacgcatagg attggtcgtc
     2101 tttgaaaccg gatatatacg gccagccgta gttctttcca gcctggatca agttgatctc
     2161 atcgtcgctt ttggggccat gttctgctga gaagagtcga cctcctggcg caaacacgag
     2221 gccctgcggg tttcgatgtc cataggagta aatgtggctc cggaccccac tgattaccgg
     2281 gttatcggac ggaatgcttc cgtcgagatt aagtctcagg attttcccga catatgttga
     2341 ccaatcccgt gcgctgaccg cgtctgcggc gggaaggtct tgcgctcgga tcggattgca
     2401 gaaatggtcg ccttggttgt tttcctggtc cgcggtcgag tagtacagcc gctggtcgtg
     2461 cccgatcagc agtcggcctg cattgtgagc gttgctggcc ggtaaacccg tgatcaattc
     2521 cacgggatgg ctcaacgtct tcgttgctgg atcataggta tagcgcgcta tctttgcgcg
     2581 gggatcgacg gggccgccac ggtgagcatt gtaagtatag gcgagataca cgtagttgtt
     2641 ttcgacgccg gccaggaagc cgggatgtaa cgccatgccg agcaggccat cctggcggcg
     2701 gtcgctaatg taaacatcgg gaatagtaat tacggtggtc ttcgacccgt ccgagggatt
     2761 cactcgaacc actctcttgc cgctcttctc ggtcacccaa agaaagccgt caagacccca
     2821 taggagctcc caggggtccg ccaaaccggt ggacagcacc cggaatgtaa aggactcgtt
     2881 cggctcggtc ccgcaaatcg tgactcctga gacgacgtac aacttgccat tgacatcaaa
     2941 aacagggtcg ccatagtcac acaccgcttc atggcggatc cgtcgctcgc tggagcagcg
     3001 cagcgttgac cgtcgcagtg tcgccgaact gcgcgacgcg cggttgcccc gtcgagctaa
     3061 tcaagccgtg gaaagtcggt tgggccatga cgctccttgc ctgcgcatcg cagtcctcag
     3121 caggcccata ccgcccgcgt tccagcgacg tgatcacaca caaaccccta agcaggccaa
     3181 cggtgtcaac ggtgacagag cgtaccgatc cggagctgtg aatgatggtc gcacacgatc
     3241 ggctgcgtgc gccgctatgg ggtagagacg ctctcgactg ccaagatcaa cccgcgacac
     3301 agtcacccag gccaccctgg ctaacgtggt cggcgccagc accacgcgat gctagctcgc
     3361 ggcaggcggt gcgaatcggc aggtcactta cctttgtggt ttgggttctg ccaacagctc
     3421 agggattcca acgtctttac cgcgcccggt gacctgagcc caatgctcga cacccttgcc
     3481 gcgggttgac cggaaccatc ctcagaggcc ttctcatgcc ggcctcgctg cctcaccagc
     3541 gggccaggac acggcagggc ccaccggagc ccttttccca cggcacgatc cccacgatcg
     3601 cttctgcccc gcgcggtggg atctgcccca ggttggcaag gttctccaga ccatatcggt
     3661 cggccccgag gagtcgcttg tggacgggaa aatcggtcga cgccccgatg tccaggctca
     3721 gcgtgtcgac tcccagggcg aggatgccac gttgctccag cagccactcg acggcctcca
     3781 gaccaaaccc cgggaagtgc agcctgccgt cgggactcgg gttgcggtac gcggccgggt
     3841 cgtgcacccg ccgctcccat cccgagtaca tacatacgac ggcgcggttg gggatgcggc
     3901 cgtggcggcg ctcgtagtcg cgcaagtcac cgacctccac catcgcgtcg ggaccttgct
     3961 cggctcggcc ggagatgccg atcaccgcga tgggggcgaa catctcctcc ggatcaagct
     4021 cggggaccag ccgaccgccg ggcacaacgt gtcccggcgc gtccaggtgg gtgcccatgt
     4081 gctcggcgaa cgaccaagtc tggacgtaaa agccggtgtc ctcgatcgtg gcaaccgtgc
     4141 gtcgccccgg ggggtcacca gcatagacag gaaagccggc tcgaaaaacg tgggtcagat
     4201 cccgtaccgt cccgagccga cgggacgcgg tctgggcgca ggcagccggc atggtcacgg
     4261 tggctgccgc ggcggcggcg ccgactagtg cggctcgtcg ggaaaagcgg cccgccggcc
     4321 cgtcgggacg ggcaggggta gcgtcggctt cctggtgcac agcgtggaac gtccccgaca
     4381 gacacatgga tggatctttt cacagggaag ctgctgcgtg gacagcttca gtgcgcagct
     4441 gccgccgctg gctataccgc agctaccagt caccccggag ggacttgcac cggcctacgc
     4501 cacttgacct ggtgatctgc gtgttcagct ctcagagcat gatcgtgcgc tgtggcgttg
     4561 cgtctgctct acctgatctt cctccacctg ctgaatctgt tgatgatgct gggctgctcg
     4621 tcggcgccca aggacatcgg acttctggtg ctgcgtcacg aagtcgcgtg ctacgcagga
     4681 ccacccggaa gcctcgcctg gattgggccg atcgcgcgtc gttcgccgcg ctggtccgaa
     4741 ggttgccgcc catactcctt tagggtcaac gcaacacagc ctttgcacca tcgcggcggc
     4801 cggtgcaaag gccatcgccg tgacccatcc taaatgggcg cccttgccgc ccatcacctc
     4861 gaacaactca tcgccgaagg cggtcgaggc ttcgtcgtct gtggcggcgc cggcgcggtc
     4921 caaccccagt tggcccaggg ccacgtcatc gcccccgtcg cggcagcgcg cgacaaggaa
     4981 ctcatatcac tacgccccac ctgctcgaca aatcgccact gacccacgct gcctcgccgc
     5041 cgaggtcaga aatgtgatga acacggaaat gtgatggact cagacagggt ctggaccaaa
     5101 caaaggcctg ccaaggccaa ggcacggaat gacacgacgc tttgtgaatc actcgggtat
     5161 ggtgagctgt tgcccgacca ttatgagatc cgggttggcg atgccgttgg cggaggcgat
     5221 cttgggatat ttgctaccgt caccgtagaa ccgctcggcg atcgcccaga gggtgtcccc
     5281 gctcaccacc gtatagatcc gctttgccgg ggcctcagcc ggtgcaggcg gggcggccgt
     5341 cggtgcaggc ggggccgctg tcggtgcagg cggggcggcc gtcggtgcag gcggggccgc
     5401 tgtcggtgca gccggggcct cagtcgccgg ggcgtcggct tccccagcca gggctgtgcc
     5461 cgacgaccac agcgcacgac cgtcagcggt gtaaatgacc aggtcacgat catcctgcag
     5521 cacgagcctg accttctcgc cgctggtttt ggaggcccag actgcgacgg gtacatctct
     5581 gcgaaaccgc ctttcctcct ccttcgtgta gagcaccagg ttgccgtcat cttgcaagct
     5641 ggcacggacc gcgcccgagc tctgggtcct ggtcgcccag accggagcgt tcgactccgt
     5701 gtagagcacc aggttgccgt cgccctgcat aatcagggtg tacttgccgt tgctagaggt
     5761 gagcttctgg tcgattccca ggctttctcc ggccctcaac acatccacgt cgtctccatc
     5821 cttccggagt gctcactccc gcggcggagc accgtgtccg tgccccggcc cggatctcca
     5881 ctgccttgaa agagtacgac gcgagctgcg agcgcgcctt ccggtcaggg cactgaggtt
     5941 ttctcagcga atgtcattct aggctcggtt gaggacgccg aaggtcagtt gcgtcagcaa
     6001 cgccgcatag cgaagccggg agggcgtcgc caaatctgtg gcggtgtggc gagtgcgtgg
     6061 gtgccggcac cgcgaatggc tgaccagcgt tctcatctgt gaccattgcg gccgtgaata
     6121 cccgtgctag taccgcgcta agagcgctga ctaaacagat caccgtacag cgcgtcgaac
     6181 gcgtcactgg ctaggtccac tatcaacgct gtcgcacacg caaacaagag gtcgcgtggt
     6241 gatcgtacac ggttgagcgt cgagcagagg tgtggtttgc gcttccattt cgctgcgtct
     6301 attagagcaa ctagcctgct gaaattcggc cgcgctgggc tctcagaggt attgcttgat
     6361 gaggtcttcg agtgaaccct ccggcacgct tccatccggg gtgagcttgt ccacgaccac
     6421 ggggagcgcc tgggccagca agtccgcgac ctgctccggg gaaagactcg actgccgggc
     6481 caccgcctca agaacctggt aaggcagcgc ctgggcgacc tgcggtccag tgagtccttt
     6541 gttcggtccg gtgccgatcc acgacctagc ctgctcgccg agtccgcctt cgcgcagcgc
     6601 gcttagcagc cccgataggg actcaccacc gccggagccg agggtaccaa gcagggaagc
     6661 gagcaacctc ccagctgaat cctcagggcc gccgccgagt agtt
//
LOCUS       DASVXZ010000932         4455 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1499240, whole genome shotgun sequence.
ACCESSION   DASVXZ010000932 DASVXZ010000000
VERSION     DASVXZ010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4455
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499240"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /locus_tag="VF788_19535"
     CDS             <1..776
                     /locus_tag="VF788_19535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX8936325.1"
                     /translation="EALIDPALTVDKVIMATHARGDTVEEILDAAAHRRVPVQRASAH
                     RVKVLAGNGRHDQGVLADVVAPRMRPLDSALKTLGSPSAVLVLDAITNPANVGMVLRT
                     ATAAGIDGVVLPRRGVPSIDPLVIKASAGVAFHAPVLRSATAEQACATLRAVGFAVLG
                     LSSSAPGATSLFGDPPPARVVYVLGNETSGISPAVAAQLTGWVGIPMAGDVESLNVAS
                     AAAVVCFDWARRRAEGSYGGQRPGILEAAEKYRSKPGVH"
     gene            976..1470
                     /locus_tag="VF788_19540"
     CDS             976..1470
                     /locus_tag="VF788_19540"
                     /inference="COORDINATES: protein motif:HMM:NF039460.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rv3235 family protein"
                     /protein_id="HEX8936326.1"
                     /translation="MTTSIAEPYPQRPQRPVLRRLVDFLPATAPVTPEPLPTTALPAP
                     DPTASIVAERVLRAVVETISGRRPAQQLSTMLRPDLLASLTSLQATAAPLQPRVRKVV
                     ARSQGPGVVEAVAVVTLSTGVRALAARFEKHLDDHDARWRCTALQLRLTTGDLATRRR
                     YRQR"
     gene            complement(1532..1876)
                     /locus_tag="VF788_19545"
     CDS             complement(1532..1876)
                     /locus_tag="VF788_19545"
                     /inference="COORDINATES: protein motif:HMM:NF014825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC-C domain-containing protein"
                     /protein_id="HEX8936327.1"
                     /translation="MVADPAQAPLPPAAVGSALAQIDGQAADGDLPPQPGSPASAALA
                     GLGGMAEPASRPLTYTGPAEDGATKVQDRGNHARDAGHAASEPSRNAPCPCGSGRKYK
                     RCHGAPTSTAHS"
     gene            complement(1883..4378)
                     /gene="secA"
                     /locus_tag="VF788_19550"
                     /pseudo
     CDS             complement(1883..4378)
                     /gene="secA"
                     /locus_tag="VF788_19550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950960.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
BASE COUNT          689 a         1517 c         1442 g          807 t
ORIGIN      
        1 tggaggcgtt gatcgatccg gcgctgacgg tcgacaaggt gatcatggct acccacgccc
       61 gcggcgacac tgttgaggaa atcctcgacg cagccgcgca ccgccgagtt ccggtacagc
      121 gggcgtctgc tcaccgggtg aaggtgctgg ccggcaacgg tcggcatgac cagggcgtgc
      181 tggctgacgt ggtggcaccc aggatgcgcc ccctcgacag cgcgctgaag acgcttggta
      241 gcccatcggc agtgcttgtg ctcgacgcga tcaccaatcc agccaatgtg ggaatggtcc
      301 tgcgcaccgc gaccgccgcg ggaatagacg gcgtcgtact gccgcgtcgg ggagtgccct
      361 cgatcgatcc gctcgtgatc aaagcctcgg ccggagtggc ctttcacgcc ccggtgctac
      421 ggagcgctac cgcagaacag gcctgcgcca cgctgcgcgc cgtcggattc gcggtactcg
      481 ggctttccag ttcggcgccc ggcgcgacca gtctgttcgg cgatccaccg ccggcgcgag
      541 tggtctacgt gctcggcaac gagacctcgg gaatctcccc cgccgtcgcg gctcaactca
      601 ccggttgggt gggcatcccg atggccggcg acgtcgagtc actcaatgtc gccagtgccg
      661 ccgccgtggt gtgcttcgac tgggctcgcc ggcgggctga gggctcatac ggcggccagc
      721 gtcccggcat actcgaggcg gcagaaaaat accgaagtaa gccgggagtg cactaatttc
      781 cacccggttc ggcgatgagt gcagacaacg ctgtgcaacc ggatccatac tctgcgtcat
      841 cggatcggtg cccctccacc agcccggtgc ccacggtctc tggcgccact gcctgggacc
      901 ggctctacgg cgtttccggc cccgccgtcg atttgaccgc gcttacccgc gtggtcctac
      961 cgacgaggag ggtccgtgac cacgagcatc gccgagccat atccgcagcg accgcagcgg
     1021 ccagtgctac gccgcttggt cgacttcctg ccggctacgg cgccagtgac gcccgagccg
     1081 cttccgacta ccgcgctacc ggcaccggac cccacagcgt cgatcgtcgc tgaacgggtt
     1141 ctgcgcgccg tggtagagac cattagcggc cgacgacccg ctcagcagct atccacgatg
     1201 ctgcgtcctg atctgttggc ctcgctcacg tcattgcagg cgacggcggc gcccctgcaa
     1261 ccgagggtac gtaaagtagt cgctcgctca cagggtccgg gggtcgtgga ggcggtcgct
     1321 gtcgtgacgc tgagcaccgg cgtccgggct ctggccgccc gtttcgagaa gcacctggac
     1381 gatcatgatg cccggtggcg gtgcacggct ctgcaactgc gcctgactac tggagacctg
     1441 gctacccgcc gccggtatcg acagcgctga cgcacctgct cagacccgac acaccgggca
     1501 tggggacgcg acatgcccgg tgtggggtgg tttaggagtg ggcggtgctg gtgggggctc
     1561 cgtggcagcg cttgtacttc cggcccgaac cgcacgggca gggggcgttg cgagagggct
     1621 cactggccgc gtgccccgca tcacgggcgt gattacctcg atcttgcacc ttggtagcgc
     1681 cgtcctcggc cggaccggtg taggtcagcg gccgggacgc aggctcggcc atgccaccca
     1741 ggccggcgag cgcggctgac gccggtgaac ccggctgcgg aggaaggtca ccgtcggcgg
     1801 cctgcccatc gatctgcgca agtgccgaac cgaccgctgc gggaggcagt ggagcttgcg
     1861 ccgggtcggc caccatctcg gtttccgcga cctggacctg cacgttgaac aggtacccga
     1921 cggactcctc tttgagcgcc tcgagcagtg cggtgaacat ctcgaagccc tcgcgcttgt
     1981 attccaccag cgggtctcgc tgtgccatcg cgcgcagccc gatgccctct ttgaggtagt
     2041 ccatctcgta gaggtgctcg cgccacttgc ggtcgagcac tgagagcacc acacggcgct
     2101 caagttcccg catcgacccc ggaccggcca actgctccag ctccgcctcg cgacgggaat
     2161 acgccgtgcg ggcgtcgtcg agcagagccg tcagcaggac ctctcgggtc agatcaccga
     2221 tgtcatcggc gacggcctcg tacttgatcc ccaccggata cagcgccttg agcgccgtcc
     2281 acaactcatc gaggtcccag tcctcggcgt agccgttttc ggtggcgccc ttgacgtaag
     2341 cggtgatcac atcggtcatc atgtgctcga cctgctcgcg cagatcctcc ccttcgagca
     2401 cccgccggcg ctcggcgtag atcacctttc gctggaggtc catgacctcg tcatatttca
     2461 ggacgttctt gcggatctcg aagttctgct gctcgacctg ggtctgcgcg gactggatcg
     2521 ccctgctgac catcttggcc tcgatcggga cgtcctcctc catccgcagg cgggtcatga
     2581 tggattcgac cagcgggcca ttgaaccgca ccatcagctc gtcacgcagg gacaggtaga
     2641 accgggactc gccggggtca ccttgacggc cggagcggcc gcgtaactgg ttgtcgatgc
     2701 gccgcgactc gtgccgctcg gtgcccagga catagagacc accagcggcg acgacttccc
     2761 tggcctcggc ctcgacctcg acccgagtct ccgccaccgc agcctcccag gcagcttcgt
     2821 actcctgcgg agtctccacc ggatccaggc ctcgggcccg cagctctgca tcggcgagga
     2881 actcggggtt gccgccgagc atgatgtcgg tcccgcggcc ggccatgttg gtggccacgg
     2941 tgaccgtgcc cttgcgcccg gcctcagcga cgatcatcgc ctctttctcg tgctgcttgg
     3001 cattcagtac cgagtgcggg atcccggctc ctaccagcgc cttggacagg tattccgaac
     3061 gctccacact cgccgtgccg accaggaccg gctggccctt ggcgtggcgc tgcgcgatgt
     3121 ccgccaccac cgcgttgaac ttggcctcct cggtcttgta gaccaggtca ccgaggtcag
     3181 tgcggatcat gggcttgttg gtggggatcg acaccacacc gagcttgtag atctggagca
     3241 gctcagcggc ttcggtctgg gcggtaccgg tcatcccggc gagcttgtcg tagagccgga
     3301 agtaattctg cagtgtgatc gtagccaggg tctggttctc ggccttgatc tccacctttt
     3361 ccttggcctc gatggcctgg tgcatgccct cgttgtagcg ccgaccatgc agtacccggc
     3421 cggtgaactc atccacgatg agcacctccc cagcccggac gatgtagtcc ttgtccttgg
     3481 agtagagctc cttggctttg agcgcgttgt tgagatagcc gaccagcgga gtgttggccg
     3541 cttcgtagag gttctcgatg cccaactggt cctcgacgag cgctaccccc tcctccgaga
     3601 cacccacggt ccgcttgcgt tcgtccacct cgtagtgcac gtcgcgcttc agcatggggg
     3661 cgagccgagc gaactcgccg taccaccggg aggactgatc ggccgggccc gaaatgatca
     3721 acggggtacg ggcctcgtcg atgaggatgg agtcgacctc gtcgacgatg gcatagctgt
     3781 gcccgcgctg gacgcagtcc cccaggctcc acgccatgtt gtcgcgcagg tagtcgaagc
     3841 cgaactcgtt gttggtgccg ttggtgatgt cggcggaata ggcgacacgc cgctcgtccg
     3901 gggtcatctg ggacaggatc accccgacct ccaggccgag gaaccggtgc acccgcccca
     3961 tccattccga atcacgcttg gcgaggtagt cgttgaccgt aacgacgtgc acgcccttgc
     4021 ctgcgatcgc gttgaggtag gcgggcagca cgccggccag cgtcttgccc tcaccggtgc
     4081 gcatctcggc gatgttgccc aggtgcagcg cggcgccgcc catcagctga acgtcgaagt
     4141 gccgctggcc caaggtgcgc ttggccgcct cgcggaccac cgcgaacgcc tcgggcagca
     4201 ggtcatccag cgattcaccc ttgccgtgac ggctgcggaa ttcaccagtc ttcgcgcgca
     4261 gttcagcgtc agacaggcca gcgaccccgg cctccaggcc gttgatgtgg tcggcgatgg
     4321 cgcgcagccg gcgcaccgtc ttgtgctcgc cggcgcggag aagtcgggac aggaccaccg
     4381 tggaagacct cactcgtatc gggacactgc tcggcgggct gctggtgggt gttgcatggc
     4441 agcgtgcacc gcagg
//
LOCUS       DASVXZ010000933         2771 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1055796, whole genome shotgun sequence.
ACCESSION   DASVXZ010000933 DASVXZ010000000
VERSION     DASVXZ010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1055796"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..815)
                     /locus_tag="VF788_19555"
     CDS             complement(<1..815)
                     /locus_tag="VF788_19555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8936328.1"
                     /translation="MSLLAGGRLLRHHLRPQHRALRHLAAWSALEAVPSFFSGLLVAS
                     AIDRGFLSGRPVVGFGYLAVLALLWAIGAVGTRQAYPWLAATIEPLRDSLITSVVAAS
                     LIRALRGEQQVSGSSVSQATVQVEMVRALLSSLLRNTRQMLSVTIAAIGGLAVLSPLL
                     ALVVTAFVVLALTGFVLLLRTLVVRYRAVVLYGEGIGVAAAPVAEGIRDVVAYAAEAR
                     AAREVGQAIETEAAALRAFARASVLRVPVVTVGAHLPVFALLALAPWLVTHQHL"
     gene            complement(812..>2771)
                     /locus_tag="VF788_19560"
     CDS             complement(812..>2771)
                     /locus_tag="VF788_19560"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8936329.1"
                     /translation="RRPIPASVPSRLPQLSQKPQSGTKASGDGVWLAYDSRKTAMSSS
                     ESSSRLAQTLTRFAGPQAPDALRASGSRLLKQSVRQAPVMVAALVVVTLGGVATTVLI
                     PSALAAAIDAATKGGPLTHALALLAILIGAGSVVDALDGLIGAYYGSFLTAQLRHRLV
                     GHALSLGVAGQRRFPAGDLLSRLTVNAGTPATFLPLLLSAASTLLIAIGAVGGLALID
                     WRLAVTFLIGVPPAVALVRLFVAKASHPFVRYQELLAAIITRLLDALRGARTIRASGT
                     SRQEIDRILQPLPELHDTGRQVWLAQGQATWRLGLLAPMLQVLVLSVGGFALTKGDIT
                     AGQLVAAASYAGMALSAVGLLDALVSLLGIQVGAGRVGEVLEAHPAVGPPVAAVPVPR
                     ESGRLELRDVTVRMGGRTILNEVNLSVPEGTSVAVVGRSGTGKSVLVSLVGRLLDPDD
                     GEVLLNGVPVSRVEFAALRRAVTYAFERPALLGATVHDMIAYARPDASRAEVVAAAAI
                     AQADRFIRLLPDGYDTPLAQAPMSGGELQRLGLARAILVNAAVIVLDDATSSLDTATE
                     VKVTEALERVLTGRTSLVVAHRTATAARADLVAWLDSGRVRALAPHLVLWTDPEYRAV
                     FAIDEDVGDATAVPAGVPDVVVPEAERT"
BASE COUNT          526 a          932 c          924 g          389 t
ORIGIN      
        1 aggtgctggt gggtaaccag ccatggtgcc agtgccagca gggcgaacac gggtaggtgg
       61 gcgccgaccg tcaccaccgg aacccgcaac actgatgctc tggcgaaggc gcgcaaggct
      121 gcggcctcgg tctcgatggc ctggcctacc tcccgtgctg cgcgagcttc ggctgcgtag
      181 gcgacgacat cgcggatacc ttcggccact ggggcggcgg ccacaccgat tccttccccg
      241 tagagcacga ccgcccggta gcgcactacc agcgtgcgaa gcaacaggac aaaaccggtc
      301 agggctaaca ccacgaacgc ggtgacgacg agagcgagca gcggggagag cacggccaac
      361 ccaccgatgg ctgcgatggt cacggagagc atctggcggg tgtttcgcag caggctcgac
      421 aagagcgccc gcaccatttc cacctgcacg gtggcctgcg agacgctcga tccgctcact
      481 tgctgctcgc cgcgcagcgc acggataagc gaggcagcga caacgctggt gatcaaggag
      541 tcgcgcagcg gctcgatggt cgcagcaagc cacggatagg cctgtcgcgt acccacggcg
      601 ccgatcgccc ataacagggc caggaccgca aggtagccga atcccacgac cgggcgccct
      661 gagaggaacc cgcggtcgat ggcactggcg accaggagcc cggaaaaaaa tgacgggaca
      721 gcttcaagag ccgaccaggc cgccaggtgg cgcagtgccc gatgttgagg acgcaggtgg
      781 tggcgcaaca accgcccgcc ggccagcagg ctcatgtgcg ctccgcctct ggaaccacca
      841 catctgggac gccggccggc acggcggtgg cgtcccccac gtcctcgtcg atggcgaaga
      901 ccgctcggta ctcggggtct gtccacaaca ccagatgcgg agccaatgct cggactcgcc
      961 cactgtcaag ccaggccacc aggtcggctc gggcggccgt ggcagtgcgg tgcgcgacca
     1021 ctaacgaggt tcgcccggtc agcacccgct caagcgcttc ggtcaccttc acctcggtgg
     1081 cggtgtccag actgctcgtg gcatcgtcga ggacgatcac tgcagcgttg acgaggatgg
     1141 ctcgggcgag ccctagccgt tgcagctcgc ctccggacat cggggcttgg gccagcggtg
     1201 tgtcgtaacc gtcaggcagg aggcggatga accggtccgc ctgggcaatg gcggctgccg
     1261 cgactacctc ggctcgtgat gcatctggcc gggcataggc gatcatgtcg tgtacggtcg
     1321 cgccaagcag ggctgggcgt tcgaaggcgt aggtgaccgc ccgccgcagg gcagcgaact
     1381 ccacgcgaga gacgggaaca ccgttgagca gcacctcacc gtcgtcaggg tcgagcaggc
     1441 gtccaaccag cgataccagc acgctttttc cggtgcccga tcgtccgacg acggccacgc
     1501 tggtgccctc gggaaccgac aggttgacct cgttgaggat cgtccgcccg cccatccgca
     1561 cagtgacgtc acgcagctcc aaccggcccg actcccgcgg gactggtact gccgccacgg
     1621 gcggtccaac cgcagggtgc gcctctagga cctcgcccac ccgaccagct cccacttgga
     1681 tgcccaacag agagaccagc gcgtccaaca acccgaccgc gctgagggcc atgccggcat
     1741 aagaggcagc cgccacgagt tgaccagcgg taatgtcgcc tttggtcagc gcgaaaccgc
     1801 ccacggacag caccagcacc tgcagcatcg gggcgagcag cccgagccgc caagtcgctt
     1861 ggccttgggc taaccacacc tgccgcccgg tgtcgtgcag ctcgggtagg ggctgcagaa
     1921 tgcggtcgat ttcctgccgg gaggttccgc tggcgcggat agtgcgagct cctcgaaggg
     1981 catcgagcaa ccgagtaatg atcgctgcca ggagttcctg atagcgaacg aatggatggc
     2041 ttgccttcgc gacgaacagc cggaccaatg cgaccgccgg cggcacaccg atgagaaaag
     2101 tgaccgccag ccgccagtcg atcagcgcca gccccccaac cgcgccgatg gcgatcagca
     2161 gggtcgatgc tgccgaaagc agcagcggca ggaaggtggc cggagtcccg gcgttgacgg
     2221 tgagtcggga cagcaggtcg ccagctggaa accgtcgctg acccgcaacg cccagcgaca
     2281 gcgcatgacc gaccagtcgg tgccggagct gggcagtgag aaagctgccg tagtaggcac
     2341 cgatcaagcc gtccagagcg tcgaccacgc tgccagcgcc gatcagtatc gccagcagcg
     2401 ccagcgcatg agtcagtggc ccgcctttgg tagcggcatc gatcgcggca gccaaagcgc
     2461 tggggatcag caccgtggtg gcgactccac cgagggtgac cacgaccaac gcagccacca
     2521 tcactggggc ctgccgcaca ctctgcttga gcagccggct gcccgaggcc cgcagggcgt
     2581 cgggcgcctg tggtcccgcg aaccgggtga gcgtttgcgc aagcctgctg ctggactcag
     2641 aagagctcat cgccgtcttt cgactgtcat atgccagcca gacaccgtcg ccggacgcct
     2701 tggtccccga ctgtggtttc tggctaagct ggggtagacg gctgggtacg gaggcgggta
     2761 taggccgcct c
//
LOCUS       DASVXZ010000934         1737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1155173, whole genome shotgun sequence.
ACCESSION   DASVXZ010000934 DASVXZ010000000
VERSION     DASVXZ010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1155173"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..316)
                     /locus_tag="VF788_19565"
     CDS             complement(101..316)
                     /locus_tag="VF788_19565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936330.1"
                     /translation="MLVHHLLLVTIDHLMAAGFLQTMRRAVVAFLTMVFGVGLPAGGL
                     LGFFLAERWAAGDDLVAAFKRSAHSRF"
     gene            474..611
                     /locus_tag="VF788_19570"
     CDS             474..611
                     /locus_tag="VF788_19570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936331.1"
                     /translation="MTNVQPVGAGVVKSRALSLARPPSTARAAGWGSRRQQWNCPGLI
                     W"
     gene            complement(660..1478)
                     /locus_tag="VF788_19575"
     CDS             complement(660..1478)
                     /locus_tag="VF788_19575"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009949860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipase family protein"
                     /protein_id="HEX8936332.1"
                     /translation="MGASAFNQHADGYSLEHAYWLGRAARLAYGDESEIRADTEKWGF
                     NQLTNFCGTHPMPFLLEDTQAYLAASDHMIVVAFRGTEPVQIRDWLSDSNTPVIPGPA
                     KKGLVHLGFSRALASIYPEIRDKVEEVRTNDQTLWFTGHSLGGALAMLAGATMYLEDP
                     KLLADGVYTFGQPRTCDRLFAAAHDTAFASRHFRFVNNNDVVARVPPEPAFHHVNAMM
                     YFDANGKLHEKMSFASKLTDSFKGLTGDPFAPGTDGIRDHSMDTYVALIEKNLG"
BASE COUNT          362 a          535 c          521 g          319 t
ORIGIN      
        1 atccgtagcc gttcgcgccc ggcgctcacc gcgcgcgcag cggcagaaga gcgcgttgtc
       61 tgctcttcgg tagccgcgat ggcgagctcg gcagcgaagg ctagaaccgc gagtgggccg
      121 atcgcttaaa tgcagcgacc aggtcatccc cggcagccca ccgctcggcg aggaagaatc
      181 ccaacagccc gccggcgggc aggccgaccc caaagaccat ggtgaggaag gccaccacag
      241 cccggcgcat ggtctggagg aatcccgccg ccatgaggtg gtcgatagtg actagcagca
      301 aatgatggac cagcatgcgg acggcatggc aggcagcaca gtgcccaggg cagccgccgg
      361 gttccgacgc aaacttcggc aaaccccata aattttgccg atccatcaga cagaacgacg
      421 cggcgacgcg cgactttcgg cgcgactctc ggccatcacc gcggggtgtt ccagtgacca
      481 acgtgcagcc tgtgggggcg ggcgtggtga aatcccgcgc cctgtcactg gcccggccgc
      541 cgagcaccgc ccgggcggcg ggctgggggt cgagacgtca gcagtggaac tgtccgggac
      601 tgatctggtg atcctcctgt tgactcgtta cagacagtgc ggcggcaggg ttgggagttt
      661 tagccgagat tcttctcgat gagggccacg tacgtgtcca tggaatggtc cctgataccg
      721 tcagtacctg gggcgaacgg atcaccggtg agacccttga agctatcggt caatttgctc
      781 gcgaacgaca ttttttcgtg cagctttcca ttcgcgtcga agtacatcat ggcgttgaca
      841 tggtggaagg cgggttcggg tggcacccgc gcgacgacgt cattattatt gacaaagcgg
      901 aagtgccggg atgcgaacgc tgtgtcgtgg gcggcggcga acaagcggtc acaagtccgt
      961 ggctgaccga aggtatacac cccatcggca agtagttttg ggtcttcgag gtacatcgtg
     1021 gcaccggcca gcatggcaag cgcaccgccg aggctgtgac cagtgaacca caaggtctgg
     1081 tcgttcgtcc ggacttcctc aactttatcc cggatctctg gataaatcga tgccagtgct
     1141 cgactgaaac ccaggtgaac caggcctttc ttcgcgggcc ccgggattac gggagtattc
     1201 gaatccgaca gccagtcccg gatctgtact ggttcggtgc cacgaaacgc aacaacaatc
     1261 atatggtcgc tcgctgcaag ataggcctgg gtatcttcca acaggaacgg catcggatgt
     1321 gtcccgcaga aattcgtaag ttgattgaaa ccccacttct cggtatccgc acgaatctcg
     1381 gattcatccc cataggccag cctcgcggcc ctgccgagcc aataagcatg ttctagggag
     1441 tatccatcgg catgctgatt gaaagcggat gcacccaccg gtcatccttt cgccgattcc
     1501 gcctaattcg aattcgattt gcagataatt ccgacgtcca gagcgccagt tcacgccagt
     1561 cgcccctccc ctgcccaacg atgggaccag acaataccgg agcacacccg ggtgcggggc
     1621 tattccagga agcggtgctg gtacgggtga acgtgacatc accaacctga tcacgcctac
     1681 caccaaggca ccaccaccgc ctccctcgcc gctacccaca ggcttgatcc ccgagcg
//
LOCUS       DASVXZ010000935         8727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1499520, whole genome shotgun sequence.
ACCESSION   DASVXZ010000935 DASVXZ010000000
VERSION     DASVXZ010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8727
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499520"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..691
                     /locus_tag="VF788_19580"
     CDS             <1..691
                     /locus_tag="VF788_19580"
                     /inference="COORDINATES: protein motif:HMM:NF017757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEX8936333.1"
                     /translation="SDRVPWEIFLTDEVNRWLDDLATVDDDSYRQVVYAIEAEVGPNL
                     GRPLVDRIKGSAIHNLKELRPGSAGSTEVRVLFVFDPWRSAILLVAGDKASNWSGWYR
                     HAIPQAEQLYETYPERTSRRTGGATMSTVRWSDIRDKHIEAIGREDIERGTSRLISQV
                     RAHRLADMRKRRGLTQREVAQAMGVTVGRVSQIENGELSGIDVLDRYVTALGGHLEVV
                     ANFGDEQFAVG"
     gene            716..1189
                     /locus_tag="VF788_19585"
     CDS             716..1189
                     /locus_tag="VF788_19585"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEX8936334.1"
                     /translation="MLTTLEMARAEFGFYAAHIALYNGEVEPLHGHTFQVALRVSGQP
                     DTSGIVAEFSEIKPAMRDAVAPLRRRTLVPGQAPELRITPNDESLSIICGRKHYLLPA
                     EDVTMLPLVNTTLEALAGYLLSQVLPQLQRVGLVAAELVISELPGTSATARADFR"
     gene            1502..1675
                     /locus_tag="VF788_19590"
     CDS             1502..1675
                     /locus_tag="VF788_19590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936335.1"
                     /translation="MSEVMKPDRPQIGLAQQRGEGPVDVAGVSDPSGAAFALIDPTDR
                     VDAPTDVAAGSAR"
     gene            1927..2439
                     /locus_tag="VF788_19595"
     CDS             1927..2439
                     /locus_tag="VF788_19595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936336.1"
                     /translation="MKDEATTHDPLAPTTVGGSNPSRWMNGTVTGTLLASVLVAALDH
                     GGLRPDPVYDIAWIVITLAATGLIRAYTAFVTCRSRRESTLRTALRMLAGEWALVAAG
                     LPAVVILLGRYPTLTAIHAVLGINVAMLLGWGALGAGQTGYRPLAAALVGIADAALGL
                     LVILANTLLK"
     gene            complement(2846..3190)
                     /locus_tag="VF788_19600"
     CDS             complement(2846..3190)
                     /locus_tag="VF788_19600"
                     /inference="COORDINATES: protein motif:HMM:NF039700.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6247 family protein"
                     /protein_id="HEX8936337.1"
                     /translation="MTGDERRHVASDPPKYTPTVVERSGPAIREALLVHAPERCRQFE
                     AEFRSALALAAQNLDLSGPQAVLAHWQAVAMMAANPLTDEEREQIERANAGDFSGLLS
                     WNQDENGSWVRL"
     gene            3513..4070
                     /locus_tag="VF788_19605"
     CDS             3513..4070
                     /locus_tag="VF788_19605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936338.1"
                     /translation="MAQRLVRFSDLTNKIIEDDETVRIIIEQHPALQNGPVELEAAAD
                     EVEAIRRSVLNVVSLKLYAGDGSAPETVTMEIEAFNKLSGKVDMAGVLHRAQPAYPPR
                     KSTNRAALSTTDKLDYTSLEHAGKPHRGKTTAAEKEIVRNNLDKINERLERDGLRTIR
                     LNDVEMVARYGLEALAKEAGHFPQQ"
     gene            complement(5242..5934)
                     /locus_tag="VF788_19610"
     CDS             complement(5242..5934)
                     /locus_tag="VF788_19610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010240983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8936339.1"
                     /translation="MIQLENVRKAYQMGKIELPVLHGVDLTIDDGEMVAIMGPSGSGK
                     STLMNILGCLDIPTSGRYLLDGADVSRLSDNRLAKIRSRKIGFVFQSFNLVARTSAIR
                     NVELPLVYAGVRSRRNAARLALEQVGLGDRQKHMPNELSGGQQQRVAIARALINDPAL
                     LLADEPTGNLDTASSIEIMKLLGALNDAGRTVVIITHEEEIARFARRVVRMRDGHIES
                     DQVQRDRTEISA"
     gene            complement(6155..6382)
                     /locus_tag="VF788_19615"
     CDS             complement(6155..6382)
                     /locus_tag="VF788_19615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936340.1"
                     /translation="MTEVCEPTKQLRRDVFVRSPRRGGLTKLLTGMGATVLAEPGRGL
                     SVSGMDACKIASVAAAHYIPIQELTLRGASL"
     gene            complement(6610..6840)
                     /locus_tag="VF788_19620"
     CDS             complement(6610..6840)
                     /locus_tag="VF788_19620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936341.1"
                     /translation="MNETRESTRQGPRDVFVRSPRRGGLTRVLTGMGARVLAEPCGGL
                     SVAGLDACKIASAAAAHYIPIQELTPRAVRQQ"
     gene            complement(7020..7277)
                     /locus_tag="VF788_19625"
     CDS             complement(7020..7277)
                     /locus_tag="VF788_19625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936342.1"
                     /translation="MKHGAVRKLTRAATLSLLVLTTTAGMASWEVLAASPAMAQASDP
                     GSGSGGQGNGSDPGSASPAQPSNPVTGIVGGLLGGGGTPAP"
     gene            7499..8179
                     /locus_tag="VF788_19630"
     CDS             7499..8179
                     /locus_tag="VF788_19630"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8936343.1"
                     /translation="MSQSSSRHLPDAARARRRLSSEDRRRELLDAALQEFSSRGYYLT
                     QMEHVAATAGVSKALVYQHFASKEELFAAVTEQVVQGFMRRLPDVLGTAGDALGAWRG
                     VVRLLCDLVTERPESWALVARHLDNPELGAPLRRLREQVYEVLAAVLASYYAPEQRNT
                     VLSEKDVLRQARLTVPLLVGALQGLMSWWLEHPEVPRAMVEAKAVDFGWLGLDRIRRG
                     EWLPLQSN"
     gene            8225..>8727
                     /locus_tag="VF788_19635"
     CDS             8225..>8727
                     /locus_tag="VF788_19635"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEX8936344.1"
                     /translation="MSVTNTADATTSHIPDREVTAQRLLRTSAKHSYDPAVEIDWDAP
                     LEPDRYFLDPHRSSLYGTELWQQMSEEQRIALTKHELASLYCMGIWFETILMQMLVRH
                     VYDRPSGSAHVRYAWTEIADECRHSVMFSRAAEKFGGPDYSPGWLVHQLGRLLKTTSN
                     GTLTFGGA"
BASE COUNT         1623 a         2755 c         2717 g         1632 t
ORIGIN      
        1 gagcgacagg gtgccgtggg agatcttcct tactgacgag gtcaacagat ggctcgacga
       61 cctggcaacg gtcgacgacg acagctaccg tcaggtcgtc tatgcgatcg aggccgaggt
      121 cggcccgaac ctcggtcggc cattggtcga tcggattaag ggctcagcca tccacaatct
      181 caaagaactc cgccccggat ccgcaggttc caccgaggtg cgggtcttgt tcgtcttcga
      241 cccatggcgc agcgcgatcc tgctggtcgc cggagacaag gcgagcaact ggtcaggctg
      301 gtatcgccac gccatccctc aggcggaaca actctatgag acctaccctg aaagaacgag
      361 ccgccgaaca ggaggtgcca ccatgagcac cgtgcgctgg tcggacatcc gcgacaaaca
      421 tatcgaggcg atcggtcgcg aggacatcga gcgcggcacg tcccggctca tctcccaggt
      481 tcgtgcccac cggctcgctg acatgcgcaa gaggcgcggc ctgacccagc gcgaagtcgc
      541 ccaggcgatg ggggtgaccg tcggacgggt cagccagatc gagaacggcg aactctccgg
      601 catcgacgtt ctcgaccgtt acgtcaccgc cctcggaggc caccttgaag tcgtcgcgaa
      661 cttcggtgac gaacagttcg cagtcggctg agcccagggc ttgaagaaag cgaagatgct
      721 taccacattg gaaatggctc gcgccgagtt cgggttctat gccgcgcata ttgcgttata
      781 taacggtgaa gtcgaacccc tgcacggaca tacctttcag gtggccttgc gcgtgtccgg
      841 ccagcccgat accagcggaa tagttgctga gttcagcgag atcaagcccg ccatgcggga
      901 cgctgtcgcg ccgctgcgac gtcgcaccct agtacccgga caggctccgg agttgcgcat
      961 cacgccgaac gacgagtcct tgtcaatcat ctgcggccgc aagcactatc tgctgcctgc
     1021 cgaggacgtg accatgctgc cgctggtcaa caccaccctt gaggcgctgg ctggctatct
     1081 gctcagtcag gtactgccac agttacagag ggtgggactg gtggcggcag aacttgtaat
     1141 ttccgagctt ccgggtacct cagccactgc ccgtgccgac ttccgctgag ctgcttatca
     1201 tcaagagcca cacagtgctg ttggacgtaa cggatcttgt ccactgaact gtccggtctc
     1261 ccgggcgccg ctagtgcctc tacgggagaa cagcgcaggc aaagtcccgg agcaattggc
     1321 gctccgcgtc ttgcgcgatc gtttttggcg atcattgact ctagcaccgc gacgagaccg
     1381 gcggccacga caaggggaac cgggggagta gacggcgctt gctgttgggg accatttggg
     1441 gactacacgt cgtgcactga ggcgaacaac ctgcacgggc gaagagcagg gtggcgcagg
     1501 agtgtctgag gtcatgaagc cggatcgacc gcagattggc cttgcgcaac agcgcggtga
     1561 aggaccggtt gatgttgcgg gggtctccga cccttccggc gccgccttcg ccctgatcga
     1621 tcccaccgat cgagtcgatg cccccaccga tgtcgccgcc ggctcagccc ggtagccgat
     1681 ccctacgacg actgacaaca ccagcccaca gcctgcggcg aggttaggcc cgggtcgctc
     1741 caggtatcag gccgatgcgg cgcgctgcca ccacggtcca caatccttgg ttctgggatg
     1801 ctgaaggccg ccggccagcc gtgggtggag tagatagaag acccgagtcg gtgggtcgga
     1861 ggtgcgcgac ctcgatctcg gcgggattca tagagcgtgc gacaccggtc acggagggcg
     1921 acgacggtga aggacgaggc gaccacccat gacccgctgg caccgacgac cgtcggaggg
     1981 agcaacccgt cccgctggat gaacggcacg gtcaccggca ctctgctggc cagcgtcctg
     2041 gtcgctgcgc tagaccatgg cgggctgcgc ccggacccgg tctatgacat tgcgtggatc
     2101 gtcatcaccc tggccgccac aggactcatc agagcgtata ccgccttcgt gacgtgccgc
     2161 agtcggcggg aaagcaccct gcggacggct ctgcggatgc tggccggcga gtgggcgctg
     2221 gtcgcggcgg gactgcccgc agtggtgatc ctgctcgggc ggtacccgac gcttaccgcg
     2281 atccatgcgg tgctgggcat caacgtggcc atgctgctcg gctggggggc cctaggcgcc
     2341 ggccagacgg gctaccgacc gttggccgcc gcactcgtcg ggatcgccga cgccgcgctc
     2401 ggcctgctag tcatcctcgc caacacgctg ctgaagtgaa gctaccgccg tgggcggcgc
     2461 gctgcgaggg ggtcaccaag tggcgcaggt cccctgtgtc tggctcgctt atttgacgaa
     2521 ctcgccgccg cgacgggata tccacgacga tccattaatc ctgccagcag gagactcatt
     2581 tctcctgcct agtcgagacc gggaaggagc cgaagcagga tcaccaaccg cgcgttctcc
     2641 acgatggcat atacaatcca tcctttatcg gcaccaatag ggatcgacca ttatcaaatc
     2701 gctggtcgta ctgcttatct ggattgccgg tggggttttc cagcaactcc tggatgcgcc
     2761 gatcggcaag gcgtcgcgtg gcctccggga ggctggcgta ctgctggtca gcctccgtca
     2821 ccaacctcag ggtgtagcgc ggcatctaca gccgaaccca gctcccgttt tcgtcctgat
     2881 tccagctgag cagtccactg aagtcaccag cattcgcacg ttcgatctgc tcgcgttctt
     2941 cgtcggtgag tgggttcgct gccatcatgg ccactgcctg ccagtgagcc agcaccgcct
     3001 gcggtcctga caggtcgaga ttctgtgccg ccaatgcaag tgccgagcga aactccgcct
     3061 caaactgcct gcacctctcg ggcgcatgca caagcagagc ttcccggatc gctggacccg
     3121 accgctcgac caccgtcggc gtgtacttgg gcggatcgct cgcgacgtgc cgtcgctcgt
     3181 cgccggtcac aacaagtaac gatgacccct gccggcagac acggtcaatg agctattgcc
     3241 cggcgatgaa ccctcatcgg ccacgttcga ccagccgcat cgaaaaccca gaccgcccaa
     3301 agacctccgc gagggtcgat cagctggcta cgccgggctg gtaattttac gggccatgat
     3361 tcacgacagg ttgcggccag ccaacgtaat tcccagcgaa gggcatggtc tcatatacat
     3421 atcgcgggcc ccaatcccta tacccgttta caagacaagc ttgacgagct gatagagtcc
     3481 gccggtcccg ttccctcctg agaggtaaca gcatggctca gcgcctggtc cgtttctccg
     3541 atcttaccaa taagatcatc gaagacgacg agactgtacg catcatcatc gagcaacatc
     3601 cggctcttca gaacggacca gtagagctcg aagctgctgc tgacgaggtc gaggcgatac
     3661 ggaggagcgt gctgaatgtg gtcagcctca agctctatgc tggtgatggg tcggctcccg
     3721 aaacggtcac gatggagatc gaggcattca acaaactttc gggcaaggtg gacatggcag
     3781 gcgttcttca tcgagcgcaa ccagcttatc caccccgcaa gtcaaccaac agggcggcac
     3841 tatctaccac tgacaagttg gattacacgt ccctagagca cgctggcaag ccacaccgag
     3901 gcaagaccac ggccgctgag aaagagatcg ttcgcaacaa tctcgacaag atcaacgaaa
     3961 gacttgagcg agacgggctg cgaaccatca gattgaatga cgttgagatg gtagctcgtt
     4021 acggcctcga agctctcgcc aaggaagcgg ggcacttccc gcagcagtag aaggcgcttc
     4081 agcactgcgc cgtcatctcg aactgtttgc gcgcacacgt tgaccttgaa gctgacgcca
     4141 gcgagatccg ctgataccca gcccggcatt ctccagaccg ggtcatgcat cagcagctcg
     4201 tgcatttggc cgaggcagct cggcagtacc caatcgccca atgtcgaccc tgatcgaccg
     4261 gcatcttctc atggacaccc gcatggtgcc atcggggagt ccttacgcca ccactcacta
     4321 atctgttggt tatcggccgc acttcttgca gacaagccca ccccacgtgc cgtcgacgaa
     4381 aacataccca tcgcagtcat agcgacggtc gtgatcacga atttccctgt gtacccatcc
     4441 gggcaactta tcgtcttttc atcggggttg gacgtaacct tgtattcggc catgagatct
     4501 ggctccgtac ttacgtgggc gccaagaagg acccgtaaag aatgaggttc gttcgcctcg
     4561 attgctagaa tgccaaacgg tcgaagaatg ttcgtcatct ctacgggtca gcttccagat
     4621 actgtagatc cggcagtgcc gctacactaa gtggtgtagg ttgaccaatt tctacatctg
     4681 tagtcgactg tttcgaccgt taacttccga acgacacaac aatcggtcat aaaggtcacg
     4741 gtcatttcca gcttgcagcc gcacgactgg gtgattgagc gtgtgcccgt acggcgtcgc
     4801 ggccccagaa gccagctatt tgagtcggat gagcccgcat ctgtccaccg aggttgtcgc
     4861 gccttcgata agccatcaag agtcgccgca gggacacatc gacgacggca gaatgccctt
     4921 gatggggcgc acccgatggc cccggtgatc agatcagtgt ccaccgccag ggtctcgacg
     4981 tagcccgtcg tgtggccgcg tgccgggaac ccgcgttctt gtagatcgtt ccctgtcaat
     5041 catttgccgt gacagcactg gccagcagcc tagatccagc tcgaggtgtg ataagtcctc
     5101 cgcagcccgc gcggcgatcg gcgatgtgcc ccgcagccag tcggagacag atccgtagcg
     5161 gatctggatg gcattgcggg gaataccgat cggttggggc agcagtcctc accgggcggc
     5221 ccaaggcggc gtggactcga ttcaggcgct aatctccgtc cggtcccgct gcacctggtc
     5281 actctcgatg tgcccgtcgc gcatccgcac aacgcgccta gcgaaccgag cgatctcttc
     5341 ttcatgtgtg atgatcacga ccgtgcggcc ggcgtcgttc agcgcaccga gcaacttcat
     5401 gatctcgatg ctggaggcgg tgtcgaggtt gcccgtgggc tcatcggcaa gcagaagtgc
     5461 gggatcgtta atcagcgctc gtgcgatcgc cacccgctgc tgctgaccgc cggagagctc
     5521 attaggcatg tgcttttggc gatcgcccag acccacctgc tccagggcca accgggcagc
     5581 gttgcgccga gatcgcaccc cagcgtagac cagcggaagc tcgacattgc ggattgcgct
     5641 ggtgcgggca accaagttga aggactggaa aacgaaccca atcttgcggc tacggatctt
     5701 ggccagccgg ttgtcggaca gccggctgac atctgcgccg tcgagcaggt agcgaccgct
     5761 ggtcgggata tcgagacagc ccaggatgtt catgagcgtg ctcttgcccg acccggaagg
     5821 gcccatgatg gcgaccattt caccatcgtc gatggtcagg tcgacaccgt ggagtaccgg
     5881 caactcgatc ttacccatct ggtacgcctt gcggacattc tcaagctgga tcattccact
     5941 cctcggtgtg gataccgaca ctgtcgagtt cggtggccgg gcgctcaacc cacagaagtt
     6001 ggttatgcca tgtcttgcgt gagtagtcgc cctcttttat ccggtccgag gtcttgcgga
     6061 cgtactcgtg ggctcctggc ggcccccatc tgatctcggg gagccatccc ttcgggaggg
     6121 tcacagtatt cgcgaggtct ccgggcgggc atcctcacag tgaggcgccg cgcagcgtca
     6181 gctcctggat cggtatgtaa tgcgcggcag ctaccgatgc gattttgcag gcgtccatac
     6241 cgctgaccga gagcccacgg ccgggttcgg ctagcactgt cgcacccatt ccggtcagta
     6301 gcttggtcag tcccccgcgg cggggcgagc gcacgaacac gtcgcgccgg agctgcttgg
     6361 tcggttcgca tacctccgtc atgcgtcaca acgttgccgc gtcctgggcg tgcgcacatc
     6421 ggatcgtggt ctgaggtccg gggtcggact ctgctccgat accacgctgc tcggcgcatc
     6481 gtgaccgcgc cgagcagggg gaccccaacc ggactttcct tagcgctcgg ctctggggtg
     6541 tcgtacggaa ggcgtggcgc tgccagagtg cgctcttcgt cggcgcacga ggtttccgac
     6601 gccggcatgt cactgctggc ggactgcgcg aggcgtcagt tcctggatcg ggatgtaatg
     6661 cgctgcggcg gccgacgcga ttttgcatgc gtccaggcca gccactgaca gcccaccgca
     6721 gggttcggca agcacccgcg cacccatgcc ggtcagcact ctggtcagtc cgccgcggcg
     6781 gggtgagcgt acgaacacgt cgcgcgggcc ctgccgggtc gattcgcgtg tctcgttcat
     6841 accgctaatg ctgccgcgtg agagccgccc ccgcatcgga gcggggtccg ggattgggaa
     6901 tcggaccctg ctccgatgca cggctgatct ccagacgccg tgcacgctgt attggcacca
     6961 ccactgacca ggacaggtgc cttctcacgc gtccttgacg agcggcaata gcaggacgct
     7021 cagggagctg gtgttccgcc gccaccaagg aggccgccga cgatgccggt gaccgggtta
     7081 ctgggctggg ccggcgaggc cgatcccggg tcggaaccgt tgccctgacc gccagaaccg
     7141 ctgcctggat cgctcgcctg cgccatcgct gggcttgcgg cgaggacctc ccagctcgcc
     7201 atccctgcgg tcgtggtcag cacgaggagg gacaacgttg ccgccctcgt cagcttgcgt
     7261 accgcgccgt gcttcatagt tactccttgt agtcgtcgaa ctgttttcga tcggtgcggt
     7321 tgatatcacg acgggtcagg tgccgcttct ccggggtgcg ctcagcgtga cgagaagcat
     7381 tcactgggtg atcgatgagc accgataggt tcagccacgc ctccgggccg tgctactgct
     7441 acgccgcagc taggagtgtg cgctcaccta gggcacagac agcgagcaca ctggtcgcgt
     7501 gagtcagtcg tcctcccgtc atcttccgga cgcagcacgc gcccggcgca ggctctcgtc
     7561 agaggacagg cggcgtgagc ttctcgacgc ggcgctgcag gagttcagta gccggggtta
     7621 ctacctcact cagatggaac acgtcgctgc taccgccggg gtgagcaagg cgctggtcta
     7681 ccagcatttc gcgagtaagg aagaactgtt cgcagcggtc accgagcagg tggtgcaggg
     7741 cttcatgaga cggctgcccg atgtgctcgg cacggctggc gacgcgctcg gagcgtggcg
     7801 gggtgtggtt cgcctgctct gtgacctggt gaccgagcgt ccggagtcct gggcactggt
     7861 ggcgcggcat ctggacaacc ccgagctcgg cgcgccactg cgcaggctcc gggagcaggt
     7921 atacgaggtg ctcgcggcgg tcctggctag ctattacgcc cccgaacaac ggaatacggt
     7981 gctttccgag aaggacgtgc tcaggcaggc gcggttgacc gtcccgctgc tggtcggcgc
     8041 gctgcaaggg ctgatgtcgt ggtggctgga gcatccggag gtgccgcgag cgatggtgga
     8101 ggcgaaagcg gtggacttcg ggtggctggg cctggaccgg atccgccggg gagagtggct
     8161 ccccttgcaa agtaactgac cagtaagtta ctttggagtc acctgttcgt ccaaggagcc
     8221 gcagatgtct gtgaccaaca ctgccgatgc cacgaccagc cacattcccg accgagaggt
     8281 gaccgcgcag cggctgttgc ggacctccgc caagcattcc tacgacccgg ctgtcgagat
     8341 tgactgggac gccccgctcg agccggatcg ctacttcctc gatccgcacc gcagctccct
     8401 gtacggcacg gagctgtggc agcagatgag cgaggagcag cggatcgcgc tgaccaaaca
     8461 cgagctggcg agcttgtact gcatgggcat ctggttcgag acgatcctca tgcagatgct
     8521 cgtccggcac gtctatgacc gtcccagtgg cagcgcacat gtccgctacg cgtggaccga
     8581 gatcgccgat gagtgccggc actcggtgat gttctcccgg gccgcggaga agttcggcgg
     8641 ccccgactac agtcccggtt ggttggtgca ccagctcgga cggttgctca agaccacctc
     8701 caacggcacc ctgaccttcg gcggcgc
//
LOCUS       DASVXZ010000936         4995 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1499527, whole genome shotgun sequence.
ACCESSION   DASVXZ010000936 DASVXZ010000000
VERSION     DASVXZ010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4995
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499527"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..672
                     /locus_tag="VF788_19640"
     CDS             109..672
                     /locus_tag="VF788_19640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936345.1"
                     /translation="MTSIVSKPLRTAILAVAVITAVAFAGAGWFGLSWYRAAHDRKLD
                     VGMERDAVLRDAQHATLTLNTLDYQRVQDGLTLWEQSATGPLLADLRSNRNTYARAIT
                     DSSTVSSATVLDAAVAALNERAGTAQVLIGVDVTSSFDRGDPGCVHRRVHLDMIRTGD
                     HWKVATLAPVGENYSENGPCPPPSSPK"
     gene            713..1279
                     /locus_tag="VF788_19645"
     CDS             713..1279
                     /locus_tag="VF788_19645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936346.1"
                     /translation="MTIPAPPLPAGIEEVAKPPRRLTGVATLVALLVALAIAVGLGAW
                     FRGEANQLVGSVATNEALVDPAATAEVSAQIREAVRRVYSYDFAQLDANERAANEVVT
                     GGFVADFRQKFARVRDQAPGQQAVVVATVPALAVKMLDGNQAVVMVFLDQEAHQAGRD
                     KPLLATGRLSITAQRVGGSWKIANAESF"
     gene            1317..2363
                     /locus_tag="VF788_19650"
     CDS             1317..2363
                     /locus_tag="VF788_19650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX8936347.1"
                     /translation="MSAGVEVVVEGLTKSFGPSLIWSDVTLTLPAGEISVLLGPSGTG
                     KSVFLKSLIGLLKPERGSVVIHDTDLVRCSERKLYEIRKRFGVLFQDGALFGSMNLYD
                     NIAFPLREHTRKSESAIRDIVSEKMELVGLTGDERKLPGQISGGMRKRAGLARALVLD
                     PEIVLFDEPDSGLDPVRTAYLNQLIVDLNAQTDATFLIVTHDINTAATLPDNIGMLYR
                     KRLAAFGPREVLLTSVEPAVAQFLSGRRQGPIGMSEEKDATQAQRELAEVEGDLPGTP
                     ELRPQLRPSPGLPARLAVSRRMDRVMGMLHTLPEVIQDAIRASFTDVDRPPYRLGWAG
                     KDSEEGSRGGIESP"
     gene            2360..3139
                     /locus_tag="VF788_19655"
     CDS             2360..3139
                     /locus_tag="VF788_19655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019816535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8936348.1"
                     /translation="MSDGFPGRGVLVHTGQLFALGLEVTRRLFRRPFQVREFIEQAWF
                     VTKVCALPTALFTIPFGATIALLLAELARQFGAQSQTGAGSVLAIVQQAAPIITALLI
                     AGAGGAAVCADLGARTIREEIDALEVLGISPVQRLVAPRVLAMVLVALVLNGLATVVG
                     VAGGYYFNVVVQGGTPGAYLASFTTFAQVSDVWVSELKAAMFGLVAGIVAAYRGLNPP
                     PGPKGVGEAVNQSVVISFVLVFLINLVVTAIYLQIVPPKGG"
     gene            3146..3967
                     /locus_tag="VF788_19660"
     CDS             3146..3967
                     /locus_tag="VF788_19660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009944094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX8936349.1"
                     /translation="MTLRVVRSSLETLEDFGDQLSLYGRAISWIPRALRRYRKEIARL
                     LAEISFGSGALIVILGTAGVMAALSLFVGSLVGLQGFRALDALGTQALTGFVTAYFDT
                     RDIAPLVASQALICTLGAGYTAELGAMRISEEIDALETMSVPSVPYLITTRLIAGLIA
                     IIPMYTIGLVMSYAASRLNVTVISGLPGGTYDHYFDLFLPVSDVLWSYVKVLTFAFVI
                     ILVCCHYGYRTSGGPAGVGIAVGRAVRACIVIVAIIDFFLTLAVFGTTPSVPVAG"
     gene            3964..>4995
                     /locus_tag="VF788_19665"
     CDS             3964..>4995
                     /locus_tag="VF788_19665"
                     /inference="COORDINATES: protein motif:HMM:TIGR00996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEX8936350.1"
                     /translation="MTTVTRRRLQGVAFLMVVTCLVALSIAKYSGAFSSGVPVTLRVD
                     HTGLQLDKHSNVKLRGLLVGEVTGLSSSGGAATVDLMLKPEMVPLIPDNVSARLLPKT
                     LFGEKYVSLVLPERPSARPLSAGDVIPQDRSFAAIELDSALDHLLPLLTDVPPQELAS
                     TLGAISGALRGRGHQLGDTLVRTRQLVSGLNTALPQIQEDITRTADLADTYTRAAPDL
                     LAALADLSVTTRTVAEQRQNLTQLWVSVTGASEDLRGFLQDNRENLIALTADSRPTLE
                     SAARYAPEYPCLLHAIAVLVPQLDRAFGVGTRQPGLHIYLEVTNNRGKYLPGVDEPRY
                     QEDRGPRCYP"
BASE COUNT          793 a         1639 c         1650 g          913 t
ORIGIN      
        1 gttcatgtgt ggtgatcacg gattacctcc tcagcgcgcg cgaccaccgt cccgcagaat
       61 ctagcgacct actgccatct cgtgcctact ttcctacctt ggatgactat gaccagcatc
      121 gtcagcaaac cgctgcggac ggccatcctc gctgtcgcgg tgatcaccgc ggtcgccttc
      181 gccggcgcgg gatggttcgg cctgtcctgg taccgcgccg cgcacgaccg caagctcgac
      241 gtgggtatgg aacgcgacgc cgtgctgcga gatgcccaac acgccacgct taccctgaat
      301 accctcgact accagcgggt gcaggacggg ttgacactct gggaacagtc cgcgaccggg
      361 ccgctgctgg ctgacctgcg gtccaaccgg aacacctatg cccgcgcgat caccgactcc
      421 tcaacggtca gcagcgcgac agtgctggac gccgcggtcg ccgccctcaa cgagcgtgct
      481 ggcaccgcgc aagtgctgat cggagtggac gtcacgtcgt cgttcgaccg tggtgacccg
      541 ggttgcgtgc accggcgcgt ccatctcgac atgatccgca ccggcgatca ttggaaagtc
      601 gctacgttgg caccggtcgg cgagaactac tcggagaacg gaccgtgtcc gccgccctca
      661 tcgcccaagt aggttcgcac aagagtccgc ggaattaggg agcacgtcga cgatgaccat
      721 tccggcgcca ccactgcctg ctggtatcga ggaggtggcg aagccacccc gacgtctgac
      781 cggcgtggcg accttggtgg cattgcttgt cgcgctggcg atcgccgttg gactgggagc
      841 ctggttccgc ggcgaggcga atcagctggt cggttcggtg gcgactaacg aggcgctggt
      901 ggatccggcc gccactgccg aggtctcggc gcagatacgc gaagcagtgc ggcgcgtcta
      961 ctcctatgac ttcgctcagc tggatgccaa cgaacgggcc gcgaacgaag tcgttactgg
     1021 tgggttcgtc gcggactttc gtcagaagtt cgcccgggtg cgcgaccagg ctcccggaca
     1081 gcaagcggtg gtggtggcga ccgtgcccgc cctcgccgtg aagatgctcg acggtaacca
     1141 ggcggtcgtg atggtgttcc tcgaccagga ggcgcaccag gccggccggg acaagccact
     1201 gctcgccacc ggcaggctca gtatcaccgc gcagcgggtc ggcggtagct ggaagatagc
     1261 caacgcggag tcgttctgac cgggccgagt tgttctgagg agcggtggga ggatggatga
     1321 gcgcgggcgt cgaggtggta gtggaagggc tgacgaaatc cttcggtccc tccctcatct
     1381 ggtctgacgt cacgctcacc ctcccggccg gtgagatcag cgtgttgctg ggtccatcag
     1441 gcaccggcaa gtcagtattt ctcaagagcc tgatcgggtt gctcaagccc gagcggggtt
     1501 cggtcgtcat tcacgacacc gacctcgtgc gctgcagcga gcgcaagctg tacgagatcc
     1561 gcaagcgctt cggtgtgctg ttccaggatg gcgcgttgtt cggctcgatg aacctttatg
     1621 acaacatcgc cttcccgctc cgcgagcaca ctcgaaagtc ggagagcgcg atccgtgaca
     1681 tcgtcagtga gaaaatggaa ttggttgggt tgaccggcga cgaacgcaaa ttgcccgggc
     1741 agatttccgg gggaatgcgc aagcgcgcag gtcttgcccg tgcgctggtg ctcgacccgg
     1801 agattgtgct gttcgacgag ccggactcgg ggctcgatcc ggtccgcact gcgtatctga
     1861 accagctgat cgtggatctc aacgcgcaga ccgacgcgac cttcctgatc gtcactcacg
     1921 acatcaacac cgcggcgacc ctgccggata acatcggcat gctctaccgc aagcggctgg
     1981 ctgcgttcgg cccccgcgag gtgttgttga ccagtgtgga accggcggtt gcgcagttcc
     2041 tcagcgggcg ccgccagggc ccgatcggga tgtcggagga gaaggacgcc acgcaagcgc
     2101 agcgcgaact cgctgaggtc gagggcgact taccgggaac gcccgagctg aggccccagc
     2161 tgaggccctc gccgggtcta cccgcccgct tggccgtctc ccgacggatg gaccgagtca
     2221 tgggcatgct gcacaccctc cccgaggtta tccaggacgc gatccgagcc agtttcaccg
     2281 acgtcgatcg gcccccatac cgtctcggtt gggcaggcaa ggactcagag gagggtagcc
     2341 gcggggggat cgagagcccg tgagtgacgg attcccgggg cgtggcgtcc tggttcacac
     2401 cggccagttg ttcgcgcttg gcctggaggt aactcgaagg ctgttccggc gcccgttcca
     2461 ggtgcgggaa ttcatcgaac aggcgtggtt cgtcacgaag gtctgcgcgt tacccaccgc
     2521 tttgttcacc atcccgttcg gcgcgacgat cgccctgctg ctcgctgagc tggcccggca
     2581 gttcggcgcc cagtcccaaa ccggagcggg cagcgtgctc gcgatcgtcc agcaggcagc
     2641 gccgatcatc accgcgctgc tcatcgcggg tgccggcggt gcagcggtgt gcgcagacct
     2701 cggcgcgcgg accatccgcg aggagatcga cgcgctggag gtgctcggca tctccccggt
     2761 gcagcgcctg gtggcgccgc gggtgctggc gatggttctg gtcgccctcg tgctcaacgg
     2821 attggccacc gtcgtgggcg tcgcgggcgg ttactacttc aacgtcgtgg tccagggcgg
     2881 cacacccggg gcctacctcg ccagcttcac cacgttcgct caggtctcgg acgtctgggt
     2941 cagcgagctc aaggcggcga tgttcgggct cgtggctggg atcgtcgcgg cgtaccgggg
     3001 gctcaaccca cctccggggc ccaagggggt gggggaggcg gtcaaccagt cagtggtgat
     3061 ctccttcgtg ctggtgttcc tgatcaacct cgtggtcacc gcgatctacc tgcagatcgt
     3121 tccgccgaag ggaggttgac cggacatgac tctgcgggtc gtgcgatctt cgctggagac
     3181 gctggaggac ttcggcgacc agctctcgct ctacggccgg gcgatcagct ggatcccgcg
     3241 ggctctgcgg cgctaccgca aggagatcgc ccgattgctg gccgagatca gcttcggatc
     3301 gggtgccctg atcgtcatcc tgggtactgc cggcgtgatg gctgcgctgt cgttattcgt
     3361 cggcagcctc gtgggattgc agggcttccg tgccttggac gcgctgggca cccaggcact
     3421 caccggtttc gtcaccgcat acttcgacac tcgcgacatc gccccgctgg ttgcctccca
     3481 ggcgctgatc tgcacgctcg gtgcgggcta caccgcggaa ctcggcgcga tgcggatctc
     3541 tgaggagatc gacgcgctgg agacgatgag cgtgcccagc gtgccgtacc tgatcaccac
     3601 ccgattgatc gccggactca tcgcgatcat tccgatgtac accatcgggc tggtgatgtc
     3661 ctacgctgcg tcccggctga acgtcacggt gatcagcggg ctgcccggcg ggacctacga
     3721 ccattatttc gacctgttcc tcccggtcag cgatgtcctg tggtcctacg tgaaggtgct
     3781 gaccttcgct ttcgtgatca tcttggtgtg ctgccattac ggctaccgga ccagtggcgg
     3841 gccggccgga gtgggcatcg cggtgggacg cgcggtgcgg gcctgcatcg tgatcgtcgc
     3901 gatcatcgac ttcttcctca ccctggctgt cttcggcaca accccctcgg taccggtggc
     3961 cggatgacca cggtgacccg gcgcaggctg caaggtgtcg ccttcctgat ggtggtcacc
     4021 tgcctggtcg cgctgtccat cgccaagtat tcgggcgcct tctccagcgg tgtgccggtg
     4081 accttgcgcg tcgaccacac cggcctgcag ctggacaagc actcgaacgt caagctccgc
     4141 gggctgctcg tcggtgaggt gaccggcctg agctcctcgg ggggcgccgc caccgtggat
     4201 ctcatgctga aacccgagat ggtgccgctg attccggaca atgtcagcgc ccgattgctg
     4261 cccaaaaccc tgttcggaga gaagtacgtc tcgctggtcc tgccggagcg tccatctgcg
     4321 cgaccgctgt cggcgggcga cgtcatcccg caggaccgca gctttgccgc catcgagctc
     4381 gactctgcat tggaccacct cctgccgttg ctgaccgacg tgccgccgca ggagctggcc
     4441 agcacgctcg gtgcgatctc cggggcgctg cgcggtcgcg gtcaccaact cggtgacacc
     4501 ctggtccgga cccggcagct ggtcagcggc ctgaacacgg cgctgccgca aatccaggag
     4561 gacatcaccc ggaccgctga tctggccgac acctacaccc gggccgcccc cgatctgctg
     4621 gccgcactgg cggatctgtc cgtcaccacc cgaaccgtgg ccgagcagcg gcagaacctg
     4681 acgcagctgt gggtctcggt caccggcgcc tcggaggatc tgcgtggttt ccttcaagac
     4741 aaccgggaga acctgatcgc gctgaccgcc gattccaggc ccaccctgga atcggcggcc
     4801 agatatgccc cggagtaccc gtgcctgctg cacgcgatcg ccgtgctggt gccccagctt
     4861 gatcgggcct tcggggtggg tacccgccag ccgggattgc acatatacct ggaggtgacc
     4921 aacaaccgcg ggaagtacct gcccggcgtg gacgagccgc gttaccagga ggaccgcggc
     4981 ccgcgttgct acccc
//
LOCUS       DASVXZ010000937         6419 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1701233, whole genome shotgun sequence.
ACCESSION   DASVXZ010000937 DASVXZ010000000
VERSION     DASVXZ010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6419
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701233"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            704..1549
                     /locus_tag="VF788_19670"
     CDS             704..1549
                     /locus_tag="VF788_19670"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8936351.1"
                     /translation="MSGIDAPLSDDVALVHIDTTKPSIARCYDAALGGKENYEVDRQF
                     IRRLEQVAPEIGRMTWDNRKFLIRVTRFLAGEAGITQFLDCGSGLPTAENTHQVAQRI
                     QPDARVVYVDNDPVVLAHGRALLEENDQTHFSAADIFEPGQVINDKIVRTYLNFSEPL
                     ALFQLGTLHHYDGERSPQSIMAKYIEALPSGSYVAISHFCDPETTSELSELARKMEQV
                     FLHSPLGSSGAFRTRAEIEGMFPGLELVEPGLIRCADWWPDGPRIEPLDPIQDCLVGA
                     VGRKP"
     gene            1939..2757
                     /locus_tag="VF788_19675"
     CDS             1939..2757
                     /locus_tag="VF788_19675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8936352.1"
                     /translation="MLGVRLRRLRETAGISRAEAGYAIRGSESKISRMELGRVSLKPR
                     DVTDLLTMYGVTDPEERDAFLEMVKRSNEPGWWQRYTDLLADWFHDYLGLEESASRIQ
                     TYEQQFFPGLMQIEDYARAIATRGWSAWASQSVQRRVEIRMRRQTLLARPDAPKLWAV
                     IDESVLHRPIGGRQVMLAQIEHVLELSKRPNITLQMVPYPRSGYDAEGSFTMLRFAEP
                     ELPDVVYIEHLGGALYLDKRSDTEIYGAVFDRLTVNAETPDHTRQLLAKARAVL"
     gene            3312..3644
                     /locus_tag="VF788_19680"
     CDS             3312..3644
                     /locus_tag="VF788_19680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936353.1"
                     /translation="MTPTMMRRQTGDHAVVLGASMAGLLAARVLPETYRTVTVIDRDV
                     LPAIGVHRRGVPHGRHLHAVQPRGREVLEEPFPGFTAGAVQAGAMDSARCARCCPGIG
                     CAKLALAG"
     gene            3879..4715
                     /locus_tag="VF788_19685"
     CDS             3879..4715
                     /locus_tag="VF788_19685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936354.1"
                     /translation="MGLPASGRGPDRHRVGLCDQDLAAASRGHRSRQVHRYRCHAGQP
                     TDGRARCGGRWPAHLTLGGILGDYPPIDPAGFDAFVASLPFPDIAEAIEGAEPLDDPV
                     GFRFPASVRHRYERLREFPDGLLVIGDAVSSFNPGYGQGMTVAANQAMALRRLLARDT
                     NPSPRQYFRLIAKTVDPPWDIAAGADLAFPDVPGTRTLKIQLVNAYIPRLHAAAAHDA
                     ALSAAFGRVLGLIDRPEGLLRPDRVTRVWWTNRRHPAPPRSPLHPTRACHDEHQKDQQ
                     AA"
BASE COUNT         1163 a         1938 c         2098 g         1220 t
ORIGIN      
        1 cgaagcgctc cctcgccgag gccgagtact cgaggattca gatgcaacag aagccgataa
       61 gtcgtcctga tgatcaacct cgggtcgcgc ccactcgatc ggggcgcatt caaagcagct
      121 gacgacctct cgaacggatg atcacagccg ccatgggcga acatctgccg cagccacgcg
      181 ccgagacatc ccaagggtcg ctcctgctgc aactcttact accgagacga gagaacggcc
      241 ctcccggtga tccatagcac cgttttggct tgtagcaggc aggattcgaa cttcgacctc
      301 tgggttatga gcagtcccac gctcatctga cctgttccgc gactgcgagc accagtgtcg
      361 tgcgccccgt ctcagcccgc gcgctcggtc gcgcagcgtc tcgttaccgg agggcatggt
      421 cttgagcgga cttcctgtcc tgcggggctc gtcgaggggg cgatcgtcgt gaccgacctc
      481 tgtcgaattg cccacccgcg ggccaactcg agtcggcagg cagctggctg gtggtgttga
      541 gcgccccaga gtcaagatac gatgcccgag cgagggaagc cctatcgctc aatgcggcgt
      601 gccgtggtag acgatccaca ctccagccca tggtttagcc cgcgtctgca ctcctatcct
      661 tggctggtcc agacccgtaa tgcaacgcct gtgaggccct gagatgtccg gtatcgacgc
      721 cccgctgtcg gacgatgttg cactagtgca catcgacacg acgaagccca gcatcgcccg
      781 gtgttacgac gcggctctgg gtggcaagga gaactacgag gttgaccgac agttcatccg
      841 gcgactcgag caggtcgcac ctgagatcgg ccggatgacg tgggacaacc gaaaattttt
      901 gatccgggtg acccgcttcc tcgccggaga ggcgggcatt acccagttcc ttgactgtgg
      961 atcgggactg cccacggcgg agaacactca ccaggtggct cagcggattc agccggatgc
     1021 ccgggtggtg tatgtcgaca acgacccggt cgtgctcgcg cacggtcggg cgctgctgga
     1081 ggagaacgac cagacgcact tcagcgctgc cgacatcttc gagccaggcc aggtcatcaa
     1141 cgacaagatc gtccgcacgt atctcaactt ttctgagcca ctcgcgttgt tccaactcgg
     1201 gacactgcac cactacgacg gcgagcgaag cccgcagagc atcatggcca aatacatcga
     1261 ggccctgccg tcaggctcct atgtcgcgat cagccatttc tgcgatccgg agaccacgag
     1321 cgaactgagc gaactggctc gcaagatgga acaggtattt ttgcacagtc cgttgggcag
     1381 cagtggagcg ttccgcactc gcgccgagat agagggcatg ttcccgggct tggaactggt
     1441 cgagcccggt ctgatccggt gcgccgactg gtggcctgac ggcccgcgga tcgagccgct
     1501 tgaccccata caggactgcc tcgtaggagc ggtcggccgc aaaccctaaa cccgcccctt
     1561 gatgtgatga aagggggtcg gtcgacctcg tagtggttct taccgcccag gtgtcgtagc
     1621 cgcgtggtga ggctcgcgtg ggcgtaatcg atgggcactg gtgtgacgtc gtccggcaaa
     1681 gacgtcacag gtgtcgcggt gtggatcaag acatagccgg gagtaagagc gtggacgggc
     1741 ggtaaatgac ggggctgggt gttgactatc gggttacgtt atgagttggg gggcgttcct
     1801 ccacgagtac ttgttcatcc agagaccagc gctaggcgca gcgtggacac ttgttgacac
     1861 ggaggtgcgg ccatagccac tcccgatccc acggcgtccc atggtgctgg tcagggtggc
     1921 cccactgccc gccgcatcat gttgggcgtc cgcctgcgcc ggctgcggga gaccgccggg
     1981 atctcacgcg cggaggccgg ctacgccatc cggggttctg agtcgaagat cagccgcatg
     2041 gaactgggca gggtcagcct caagccacgg gacgtgaccg acctgctcac aatgtatgga
     2101 gtgacagatc ctgaagagcg ggacgcgttc cttgagatgg tcaagcgatc caacgagccc
     2161 ggatggtggc agcgctacac cgatctactg gccgactggt ttcacgacta cctcgggttg
     2221 gaggagtcgg cctcccggat ccaaacgtat gagcaacaat tcttccctgg cttaatgcag
     2281 atcgaggact acgcaagagc tatcgcgacc cgcggttggt ctgcgtgggc gagccagagt
     2341 gtgcaacgcc gggtcgagat ccggatgaga cgacagacgc tgctcgccag gccggatgca
     2401 cccaagctgt gggcggtcat cgacgagtcc gtgctgcacc ggccgatcgg cggcagacag
     2461 gtgatgctgg ctcagatcga gcatgtcctc gaactcagca agcggcccaa catcaccctg
     2521 caaatggtgc cctacccacg cagcgggtac gacgccgaag gttcgtttac gatgctgcgc
     2581 ttcgccgagc cggaactgcc ggatgtggtc tacatcgagc acctcggcgg cgcactgtac
     2641 ctggacaagc gatccgatac cgagatctac ggcgcagtat tcgaccggct gacagtaaac
     2701 gctgaaactc ccgaccacac ccggcaattg ctggcgaaag cgcgggccgt gctctgagcg
     2761 gctagcaccg gccctgcctt acgtccgctg agacggccca cagacggtcc tgatgcggac
     2821 ctatccatgg tcatcggcgc gagcaggccg gtttgacggg tgtgcggaag aggctcctga
     2881 gtaggcgcct acgcttgggc atagcgtgca ccggaggtga tatctgaaat gcaagcggat
     2941 gacatacccg aggtgtgagt tcttggtgtc cgccacctgc ggtgagatcg catgatccga
     3001 agcggtcggt gaggcgacgt cacttcgttc atctggatag gcgctcgatc gtcgctttgg
     3061 taggacggtt ggccaccgaa ggtggagatc attgatcccg aggactgcta cggcgtgtac
     3121 tagacgctga gttggctgct ccgctggctc gatagatagg cgaaggtcac ccagttgtca
     3181 ctggcagctg ggtgaccttc gaatcgaagg attcgccggt attttcgcgc tgtggtgacg
     3241 ctcttttctt gtaacgccgg ctgccggtgt cggagcacga tccgctccgg cggtcgtcga
     3301 gaggtggagc catgacaccc acgatgatgc gcaggcagac aggtgatcat gcagtagtcc
     3361 tgggtgcgag catggcgggg ttgctggcgg cccgggtgct tcccgagacg taccgcaccg
     3421 tcacagtgat cgatcgggat gtcctgccgg cgatcggggt gcaccggcgc ggcgtgccgc
     3481 acggccgcca cctgcatgcc gtgcaaccac gcggacgtga ggtgctcgag gagccgtttc
     3541 ccggcttcac cgccggcgcc gtgcaggccg gggcgatgga ctcggcacgt tgcgcccgat
     3601 gctgtccggg catcggctgc gccaagttgg cattggccgg ttagggctat ttgtcagccg
     3661 accattcctg gaaggtcagg tgcgcgctcg gatacaggca ctccccggca tcacctttgt
     3721 ggaaggcacc gacatcgttg gcctgaggac cacgcccgac cggcgttgag tcaccggagt
     3781 cacagcgtgc gggaccgacg ggcagccgca gccgatcacg gcggatcttg tcgtggacgc
     3841 cccggccgtg gctcgcgcac gccgatctgg ttgcaagagt ggggctacca gcgtccggcc
     3901 gaggaccgga tcgacatcgg gttgggctat gcgaccagga ccttgcggct gcgtcccggg
     3961 gccaccggtc acgacaagtt catcggtatc ggtgccacgc tggacaaccc acggatgggc
     4021 gggctaggtg cggtggaagg tggccggcac atctcaccct gggcggcatc ctcggtgact
     4081 acccgccgat cgatccggcc ggcttcgacg ccttcgtcgc cagcctgccc ttccccgaca
     4141 tcgcggaggc gatcgagggg gccgagccgc tggatgaccc ggtcgggttt cggttcccgg
     4201 ccagcgtgcg gcatcgctac gagcggctgc gcgagttccc cgacggcctg ctggtcattg
     4261 gtgacgcagt cagctcgttc aaccccggct atggccaggg catgacggta gccgccaatc
     4321 aggccatggc gctgcgccgg ctgctggccc gcgataccaa cccctcgccg cgccagtatt
     4381 tccggttgat cgccaagacg gtcgacccgc catgggacat cgcagcgggc gcggatctcg
     4441 ccttccccga tgtgccgggc actcgtaccc tcaagatcca gctggtcaac gcctatatac
     4501 cccggttgca cgcggcagcc gcacacgacg ccgcgctgag cgcagccttc ggccgggtcc
     4561 tgggcctgat cgacaggccc gagggcctgc tgcggcccga ccgcgtgacg agggtgtggt
     4621 ggaccaaccg gcgccacccg gccccaccgc ggtcgccgct gcacccaacc cgcgcgtgtc
     4681 acgatgaaca ccagaaagac caacaagccg cctgacgctt gacgcccgcg agccatggga
     4741 tgtcttaagt gcgggacgct ggtgaaccgg gtacagtcgt cgccgatttc ggctagcacc
     4801 cgcgtaccgg tgaggtcagc cagaccggaa gctagtgatg atctcacggt ctgggtgttg
     4861 ggcgaatgct tcggtggggc tgagatggta agtcggtcgg cgtcggcacg ttcggtagcc
     4921 agaatggcga gtagcgcgct gtcctggcgg cccatggcgt tctcgacgaa gccgccacgc
     4981 taatgacgtg cgggcactgc ccgacgaaga cacacggcga gcccagcttg gaagagtgcg
     5041 gtcaccgcgc cgtcaaacgt atcgatctgc ggtgaggcct ggtcacaggt gcccgctgtt
     5101 gaccgtggtt tcccgccctt aatggcacgc taatggcgca tgcgggtatt aacttgccgc
     5161 aggcgagggg tacggaagcg gatatcccgt cgcgtcggtg agcctgcttc gaagcaggac
     5221 tagggtaggg gtcccgctgg aacacccgac gcgctgaacg agctgaacca cttggtgcga
     5281 aaggttaacc gcgcctgata tcaatggatg aggtcagaaa acacgatgca gagtgaatcg
     5341 atgcccacac gtcgaccgtg cacaacgaag aattggtggt tgagaaccaa caaaagatga
     5401 acaatcacac cttgtgcaac taaagtcgcc ttcctcccaa cccagttcga ttaatgcctc
     5461 ttgtagttca gcgagaccat cggtaacctt ctctaatgcg ggtttcaaat actctcgttg
     5521 gtcttccgag agcttccggc ttgactgatt cataatgaac tccgttccgg tcgcgccaat
     5581 aatcaatagc cgataataat ttcttagcac cgggtacgcc aactgtcatc cgccatcttg
     5641 atgaaccgat acatcattta gtctgcgagc cgggccacgt tagctttggg tgatcaatca
     5701 cctccgggtt gtgacatatg agtgcagtcc tgaggcgtgt atcgcttctt ggacggtccg
     5761 tttctccggg acacatcgcg aatcccggcg ggcgcgcctc tctatgcatc gatcaatgta
     5821 gtcgtccaaa cggtgatcac cgaggctgtc agggtgtgcg attcacgggc gctgcccgtc
     5881 attcttcact gtcaccagcg gttgccgtac tcgtcgcttc caaagcggtg tccgatggtc
     5941 cagcggcatt cacatgctgc cggtgtttgc gcatgagtga cggcggaacg gttgctcgta
     6001 cgctgtcgta gttgtcggat cgagctgtca tccctgaagg agtgggctgg tcaaggaccc
     6061 cttcgttggg gtgttggggt gctgatcttt cttttcttgg ttctcggcca gtttttgggc
     6121 gcgccgggat gaggcgtcgc atgctgttca gggcggagaa gagtgtgggg tggtgttgct
     6181 cctggggttg tggtgtgggt cgggtgcgtg ctccaggtcg gtttcccggg tatggacagg
     6241 ccccggttgg ggctgtcggt cctcccttcg ccgcgcacgg cggcatggag cgctgcgaca
     6301 ggtgcggtcg gtcggggtca atcagaaggg cgacctcgcc gagtgggggt catgacagca
     6361 acgacccggg accgaccgcg gtcggggtag cgggctcatg cggcggtggg ggtcaggcc
//
LOCUS       DASVXZ010000938         2733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1701250, whole genome shotgun sequence.
ACCESSION   DASVXZ010000938 DASVXZ010000000
VERSION     DASVXZ010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701250"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /locus_tag="VF788_19690"
     CDS             complement(<1..721)
                     /locus_tag="VF788_19690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HEX8936355.1"
                     /translation="MAESDSGVVPQPVLSPLTTAAIFLVVTIDPGGESAARELLSDLA
                     ALQRSVGFRVPEGRLSCVVGVGSQAWDRLFGGPRPAELHPFRELVGAEHRAVSTPGDL
                     LFHIRAMQLYPCFELASQIMDKLVGAVTACDEVQGFTYFDVRDLLGFVDGTENPVGAA
                     ASAAVLIGEEDPEFVGGSYVVVQKYLHDLRAWNALPVEAQEKVIGRTKLSNIELADAI
                     KPDNSHVALTTITDSDGTERQI"
     gene            complement(752..1855)
                     /locus_tag="VF788_19695"
     CDS             complement(752..1855)
                     /locus_tag="VF788_19695"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX8936356.1"
                     /translation="MLQLVKGIDMGVFRTNSMLAGAIAVAALTLSACASGVRDTSGPS
                     TLAQPPANAHDLEQAYVSVVQRVLPSVVQITTDRALGSGIVFDTKGNIVTNAHVAGQA
                     TKFQVRLADNPRSIPATLVGTYQPDDLAVIKLDQPPPSLHSAHFGDSARLQVGDIVMA
                     MGNPLGLTGSVTEGIISATGRTVTEPAGGSSPGATLPEAIQTSASINPGNSGGALVDL
                     AGDVIGIPTLAALEPSGDGGGTAPAPGIGFAIPSNVVTDIAGQLIAHNGHVINSHRAQ
                     LGVRVATVVDPTGQPVGMGVVSVVAGGPAAAAGVQPGEVITAVNNTPVHSASELAQVL
                     AKLDPGQTVPVTLTNPQGGSRTVMVTLGQLPGS"
     gene            complement(2024..2215)
                     /locus_tag="VF788_19700"
     CDS             complement(2024..2215)
                     /locus_tag="VF788_19700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936357.1"
                     /translation="MVHSVHGLPANRESGLPAELADLLDRVAGPVVDRGCAQFTGLVQ
                     PLGYAVDDMNLGRAFSSAL"
     gene            2198..2617
                     /locus_tag="VF788_19705"
     CDS             2198..2617
                     /locus_tag="VF788_19705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936358.1"
                     /translation="MDGVHHGIDAVGFQAHDRAKPGVEKPTQVIEDLGRLINPTGHLG
                     IAGVYAEKDLHPAAAGHPDGSLTVPWATFFNKGISVDFGRTHDRRYTTLLRDLVVSGR
                     ARPGVVVTHHGGLDDAAALYQEFDQRANGVIKAVLCP"
BASE COUNT          488 a          906 c          871 g          468 t
ORIGIN      
        1 aaatctgccg ctcggtgccg tcggaatctg tgatcgtggt caatgcgacg tgtgagttgt
       61 ccggcttgat ggcgtcggcc aactcgatat tggacagttt ggtacgaccg atcaccttct
      121 cctgggcttc caccggtaga gcgttccacg cccgcagatc atgtaggtac ttctgcacaa
      181 ccacataact cccgccgacg aactcgggat cctcctcgcc aatcagcacc gctgcactcg
      241 ccgcggctcc caccggattc tcggtcccgt caacaaatcc cagcaagtca cgtacgtcga
      301 agtatgtgaa tccttgcact tcgtcgcagg ctgtcacagc gccaaccagt ttatccataa
      361 tttggctcgc cagctcgaag catgggtaca actgcatggc ccggatgtga aaaagtaagt
      421 cgccgggcgt agaaaccgcc cggtgctcgg ctccaaccaa ttcacgaaaa ggatgcagct
      481 cggccgggcg cggcccgccg aagagccgat cccaggcctg cgaaccgacg ccgacaacgc
      541 aactcagcct gccctccggc acccggaaac cgaccgaccg ctgaagagcc gccaagtcgg
      601 acaacagctc gcgcgcggcg gactcgccac ccggatcgat cgtcaccacc aaaaagatcg
      661 ccgcagtcgt cagcggactg agcaccggct gcgggaccac cccagagtcg gactccgcca
      721 tcgctacatc ctcacccacg ctcggcactg gttagcttcc gggcagctgg cccaaggtca
      781 ccatgacagt gcggctccca ccctgcgggt tggtcagggt gaccggcaca gtctggccgg
      841 gatcgagctt tgccaggacc tgagcgagct ccgaggcgct gtgcactgga gtgttgttga
      901 ccgcggtgat cacctcgccg ggctgtactc cggccgctgc ggccgggccg ccagccacca
      961 cacttaccac gcccatgccg accggctgac cagttgggtc caccacggtg gccacccgga
     1021 cgccgagctg ggcgcgatga gagttgatca cgtggccgtt gtgtgcgatg agctgcccgg
     1081 cgatgtcggt gacaacgttg ctgggaatcg cgaatccaat gcccggggcg ggggcggtgc
     1141 caccgccgtc tcccgagggt tcgagcgcgg ccagcgtagg tatgccgatg acgtcgccgg
     1201 ccaggtcgac gagcgcccca ccgctgttcc cagggttgat cgaggcgctg gtctggatgg
     1261 cctcgggcag cgtcgcacct ggggaggagc ctccggcggg ctcggtgacg gtacggccgg
     1321 tggccgagat gatcccctcg gtgacactgc cggtcaaccc cagtgggttg cccatggcca
     1381 tgacgatgtc gccgacctgc agcctggcgg agtcaccgaa gtgcgctgag tgcagcgagg
     1441 gcggtggttg gtcgagcttg atgacggcga ggtcgtcggg ttggtaggta ccgaccaggg
     1501 tggccgggat tgatcggggg ttgtcagcca gacgcacctg gaacttggtg gcctgtcccg
     1561 caacgtgcgc gtttgtcacg atgttgccct tggtgtcgaa gacaatgcct gagccgaggg
     1621 cacggtcggt ggtgatttgc acgaccgagg ggagcactct ttgcaccacg ctgacgtaag
     1681 cctgttccaa gtcgtgggcg ttagccggcg gctgtgccaa ggtagacggt ccgctggtgt
     1741 ccctgacacc gctggcgcac gcgctgaggg tcagcgcggc gacggctatc gcgccagcca
     1801 gcatgctgtt tgtgcggaag acgcccatgt cgatcccctt aaccagttga agcacctaac
     1861 cgccattatc cggcattcga gcgatcgtca ccattacaat agagtatgta tttccgagtg
     1921 gagcggcatt gatcactcat ccccatctgg acttctgggc cggcacggaa tagcgtcgtg
     1981 cactgcccgc gtaagggcat cgtgccagcg gcctcctcgc ggcttatagc gcgctgctga
     2041 aagcgcggcc gaggttcatg tcgtcgacgg cgtacccgag cggctggaca aggccggtga
     2101 actgggcgca accccggtcg actaccgggc cggcgacccg gtcgagcaga tccgccagct
     2161 ccgccggaag gccggactcc cgattggcgg ggaggccatg gacggagtgc accatggcat
     2221 cgacgcggtc ggcttccaag cccacgaccg ggcgaagccc ggagtggaga aacccaccca
     2281 ggtcatcgag gacctgggcc gcctgatcaa ccccaccggg catctaggga tagcgggggt
     2341 atacgccgag aaggacctcc acccggccgc ggcggggcac ccagacggca gtcttaccgt
     2401 gccctgggcg acgttcttca acaaaggcat ctcggtcgac ttcggccgca cccacgatcg
     2461 ccgctatacc accctgctgc gcgatctcgt cgtctccggg cgcgccagac ccggtgtagt
     2521 tgtcacccac cacggcggtc tcgatgacgc agccgcgctg tatcaggaat tcgatcaacg
     2581 tgccaacggc gtcatcaagg ccgtcctgtg cccctaggat cccacccgaa ccaacggcgt
     2641 aacgtgccgc tcaccgccct cgccgctgcg ctgacctttg gcgcgggcgc gatggacatc
     2701 gccagcttca cccggctcgg tggcgtgttc agc
//
LOCUS       DASVXZ010000939         1925 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1701438, whole genome shotgun sequence.
ACCESSION   DASVXZ010000939 DASVXZ010000000
VERSION     DASVXZ010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701438"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..1716
                     /locus_tag="VF788_19710"
     CDS             394..1716
                     /locus_tag="VF788_19710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006245909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8936359.1"
                     /translation="MKTVPTLRVVDTTNTADQLRELGVDLPAEIQLALTEIGAVAREG
                     LLAMSVAAGMAVMQAMFDAEIAAACGPKGRHDADRTATRHGRQAGSVVLGGRRVSVTR
                     PRARTVDGHEVPLPAYRLFAGEDQLSAVVLERMLAGLATRRHTAAAEPVGAAIEQSAS
                     ATSRSAISRRFIAQTKTALADLLARDLAGLDIKVLMIDGEHLAEHCCVVALAITADGT
                     KVPVGLWEGSTENKTVARHLLADLVSRGLDADDGLLVVIDGATALSAAVTAVFGGQAA
                     IQRCTVHKRRNVAEHLPEDQRAWVDAKLVRALHNPDAAAGLRDVKALATLLERKHPGA
                     AASLREGMNELFTVARLGITGRLATTLTTSNPIESMISIARTTNRNVTRWRDGQMVLR
                     WTAAGMLNAQRSFRRVKGYKQMPQLVTALRRHAHPATTRNTETVGAAA"
BASE COUNT          330 a          655 c          653 g          287 t
ORIGIN      
        1 ggcggcggcc gagagaacgg cgagcagcag gtagccgacg acaggtccgg cgcgcgggct
       61 gctgaaggcg cgcatggcgt ccatcgcggc agcgatgaac gacctcacga acgccatcga
      121 ggagctcgag ttctcacccg accgcacgac ccttctggtc cgcgactcca ccggtgcatt
      181 caacttgtgg gacgtttccg atccgcacca cccgagccga ctggccattc cgccgatgca
      241 ggacaacccc gacgaactaa tcggtggctt aacgaccaga gagcgtgtcc cgatcttcgt
      301 agaaatttga ggtggcggtc ccccgcctga gtcctgccga gtggtaggtc tcgggtgatc
      361 ggccaagaac acccgaacgg aaaggggacc gctgtgaaga ccgtaccgac tctgcgtgtg
      421 gttgacacga ccaacaccgc agatcagctt cgggagctgg gtgtcgacct gcccgctgag
      481 atccagcttg cgttgacgga gatcggcgcg gtggctcgtg aagggctgct ggcgatgagc
      541 gtggccgcgg ggatggcggt gatgcaggcg atgttcgacg ccgagatcgc cgcggcctgt
      601 gggccgaagg gccgccacga tgcggatcgg accgccaccc ggcatggccg ccaggcgggg
      661 tcggtggtgc tgggcgggcg gcgggtatcg gtgactcgcc cccgcgcccg caccgtcgat
      721 gggcacgagg tgccgctgcc ggcctaccgg ctgttcgctg gcgaggacca gctcagcgcg
      781 gtggtgctgg agcggatgct ggccgggctg gccacccgcc ggcacactgc cgctgcggag
      841 ccggtcggtg ccgccatcga gcaatcggcg tcggcgacga gccgctcggc gatctcgcgc
      901 cggttcatcg cgcagaccaa gaccgcgttg gccgacctgc tggcccggga tctggccgga
      961 ctggacatca aggtgttgat gatcgacggg gaacacctcg ccgagcactg ctgcgtggtc
     1021 gcgctggcca tcaccgccga cggcacgaag gtaccggtgg ggctgtggga aggctccacc
     1081 gagaacaaga ccgtggcccg tcatctgctg gccgacctgg tctctcgtgg cctggacgcc
     1141 gacgacgggt tgctggtggt catcgacggc gccacggcgt tgtcggcggc ggtgaccgcg
     1201 gtgttcggcg gccaggcggc gatccaacgc tgtactgtcc acaagagacg aaatgtcgcc
     1261 gagcacctgc ccgaggatca gcgggcctgg gtcgacgcca agctcgtccg cgcgctgcac
     1321 aacccggacg cggccgccgg gctgcgcgac gtcaaggccc tggccacctt gctggagcgc
     1381 aagcaccccg gcgctgctgc atcgctgcgc gagggcatga acgaactgtt caccgtggcc
     1441 cggctcggga tcaccggccg gctcgccacc acgctgacca cctcgaaccc gatcgagtcg
     1501 atgatctcca tcgcccgcac caccaaccgc aacgtcaccc gctggcgcga cggacagatg
     1561 gtgctgcgct ggaccgccgc cggcatgctc aacgcccaac gctccttccg ccgcgtcaag
     1621 ggctacaagc agatgcccca actcgtcacc gcgctacgcc gacacgccca ccccgccacc
     1681 acccgaaaca ccgaaactgt cggcgccgcg gcataacatc agacgggatc gtcaccgaaa
     1741 ttccacgaat cccgtgacac cctcctgaag gcagtcatac gttgacctga tgtcagcgac
     1801 acccagaacg tgtgtcggct atagaagcga aacggctcct gccgctctgg gcggcgcggt
     1861 cgcggctgcg cagtggtgcg gatgacggaa catcgtgatg atccgttccg cgctctgctg
     1921 cttgg
//
LOCUS       DASVXZ010000940         7851 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_803313, whole genome shotgun sequence.
ACCESSION   DASVXZ010000940 DASVXZ010000000
VERSION     DASVXZ010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7851
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_803313"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VF788_19715"
     CDS             <1..344
                     /locus_tag="VF788_19715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936360.1"
                     /translation="SAPMTGLSTVAGTGNEACPYCEVTSGVQSTPTPPRVQAWTCTAC
                     RTNWAITTVNPRPYFDRLAATVEQFGATRSVLRQLITLADDAATLSDTALRDRLLALA
                     DRPGKESNRHF"
     gene            complement(488..676)
                     /locus_tag="VF788_19720"
     CDS             complement(488..676)
                     /locus_tag="VF788_19720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936361.1"
                     /translation="MPQGLLHHFEIHVGREHERRRAVAQVVQAHRRQASRSDEVKEPV
                     ADHRGVQTFPVLPGEHLP"
     gene            complement(853..925)
                     /locus_tag="VF788_19725"
     tRNA            complement(853..925)
                     /locus_tag="VF788_19725"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(890..892),aa:Arg,seq:acg)
     gene            complement(964..1053)
                     /locus_tag="VF788_19730"
     tRNA            complement(964..1053)
                     /locus_tag="VF788_19730"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1015..1017),aa:Ser,seq:gct)
     gene            1202..2053
                     /locus_tag="VF788_19735"
     CDS             1202..2053
                     /locus_tag="VF788_19735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003057589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8936362.1"
                     /translation="MNQPLAETVAGRPRAGLAPLVAAYTGYRIEGARPGVHRGLPSRY
                     LTFIVTLGGTVDLAALPDSAQPPASFTTLAGGLHATPALISHDGHQHGIQLHLTPLGA
                     RVLFGMPAGELASTVVDLGTLLGPVAGELVERLRAARTWTDRFLELDSVLARIVKQRD
                     GPAPEVEWVWRRLTASHGRVEVTTLAGEVGWSRRHLGERFRREFGLTPKVAGRVMRFE
                     VAHRLLRTSQRPGLADVAARAGFYDQAHLHREWRDLAGCTPSQWLAEEFPSVHDGEAV
                     RTACSVA"
     gene            2050..2439
                     /locus_tag="VF788_19740"
     CDS             2050..2439
                     /locus_tag="VF788_19740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX8936363.1"
                     /translation="MTDNTPAPTIWPCLSYSDERAAIRFLVDAFGFRETLVVPGDDGR
                     IVHVELRWPEGGGIMFGSGDGEFGGKSGNASLYVVTDSPDELFERATAAGAEVVRGLR
                     DEDYGSRGFTVRDMEGNHWSFGTYRGT"
     gene            complement(2462..3163)
                     /locus_tag="VF788_19745"
     CDS             complement(2462..3163)
                     /locus_tag="VF788_19745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020658974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8936364.1"
                     /translation="MIRVMVVDDQPLARAGMAMLVNAEQDIAVVAEAADGQDALIQAR
                     EQRPDVILMDVRMPGTDGVAATRAVVGERLTARNGQPIRVIILTTYHLDESVHAALRA
                     GAVGFLLKVAAATEIVAAIRAVAAGEAWLDPRVTFPIVAGIARQPEKRTPTSAEMTQL
                     TSREREVLALLAQGLTNADAAEHLVIAEATVKTHLARVMKKLGLREKAQAVAVAYQTG
                     LVSPPAPRSDLLPIA"
     gene            complement(3160..4470)
                     /locus_tag="VF788_19750"
     CDS             complement(3160..4470)
                     /locus_tag="VF788_19750"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX8936365.1"
                     /translation="MKIPGRLSRGVRIPPTAGRDALLLPTVFLFNCYLYSSWRQLFHV
                     STSPWLLLVWLYGLVGLFFLVWRDKAPVTVFVSQWILTVAAWPISTHYTPVVGVPISL
                     YAVAVHCSRKTSVLALLASLVPTGLAAAVAFEVSSTFSKAISAFIPNIIFLVLLATGA
                     WVAGRSTRANQRRLQTLEYERKMAREALAAERNRIARELHDIVSHAVTVIVLQAAGAA
                     RVAETNLAQVIESLGHIQSTGEQAMVELGRLLGVLKADDGASPTAGGLGELGPQSGLA
                     ELPVLLGSLRATGMPVSVDVDGTPRALDPSVDLTAYRIMQEGLTNVLKHAGKDSNARL
                     RLVWEAQNLLIQIDNDIKPGVNPAQARRGRALSNGRGLLGLCERAHADGGHLQAGPAP
                     NRGGYRLTAALPFADTAQRHSAETRSYDSDSGERYERDQGKVPA"
     gene            5373..6785
                     /locus_tag="VF788_19755"
     CDS             5373..6785
                     /locus_tag="VF788_19755"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen-III oxidase family protein"
                     /protein_id="HEX8936366.1"
                     /translation="MTAVAAPSTPYPSKYTTPFLLYPPALWRNAIGSDFAQQHLGLRE
                     QGTDYVMYLSVPFCRVRCHSCPYFVDLLSIHDAKTQNKEQRYVEALLADLERWAGYPR
                     FATGRLRAIYIGGGTGSILSPANLKRVIDTVTTKFPLQPGYELTLEGNARDYDGAKLD
                     YVADSPITRISLGVQSFDPAILKVIGSPHAAEQSVTAINELHRRGFRNVQMDMMYNLP
                     GHTRQIWRSDLQRLADLDIEHLTTYLYRIHDGTPQAKFIASGKVQPLLDKESAYVKNM
                     QADLVETAAELGFVNYMFDHYAKPGAESIYNEWTFGRNMIEVLGVGPGAYGFVNDYRI
                     GTAKDVEGYIAAANRGEHLISAVSPKVDDQVRRERYVVNVLQYARIDLDAYLHHFGTE
                     LSDDFPGVADKLVDRGLAVLEGRRLGLTALGREWHMNVMLEFTNDQFWGDTSALDSPH
                     WAMNTPMVELFAGRRQDWLG"
     gene            6852..7646
                     /locus_tag="VF788_19760"
     CDS             6852..7646
                     /locus_tag="VF788_19760"
                     /inference="COORDINATES: protein motif:HMM:NF015331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8936367.1"
                     /translation="MTIDPTLAQVLAGLQIGITDVTPQLRLRDDLGMDSAEIIDMICA
                     CESAYGVSIPDDGTLLSRLQRVCDVLDLVQVSGGVLTTADPAVVTTMDQAPGFTDRCV
                     QSIEIAAPLEVVYAALFDVTAWPQHLPHVHAIDLCYDDGRYQEFRMSVASGNEQLLHV
                     RSIRNCRPKVIEFFQPEPPPYLRHHGGVWRFTATSSASTRIEVTHVWNLGDRLAEFFP
                     ERDGRSGAQQVREVLAQHSNLALTRWKTVLESAPTSAIAGLVEVGA"
     gene            7643..>7851
                     /locus_tag="VF788_19765"
     CDS             7643..>7851
                     /locus_tag="VF788_19765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8936368.1"
                     /translation="MNISEKITIDVPPRDLYQLYCDLERWPQVLDDVVSVQLHYADGY
                     HQEFSMTVRRPSGEETVRGVRYCRGR"
BASE COUNT         1388 a         2646 c         2502 g         1315 t
ORIGIN      
        1 tgagcgcccc gatgaccggc ctgtccacgg tcgccggcac cgggaacgag gcgtgcccct
       61 actgcgaggt caccagcggt gtgcaatcca cgcctacccc gcccagggtc caggcgtgga
      121 catgcacggc gtgccggacg aactgggcga tcaccactgt taacccacgg ccctactttg
      181 accgcctcgc cgcgaccgtc gagcagttcg gtgcgacacg ttcagtattg cggcagctga
      241 tcacgctggc tgacgacgcg gccacgctct cggatacggc gctgcgggac cggctgctgg
      301 cgctggccga cagaccaggc aaagagtcga atcggcattt ctgaaaaaat tcgttacata
      361 gatgattttg gttacagacg cgggtgcgcg caccgtgccg ctggacgcgg gaaccgtggc
      421 cgcaatacgg gcgcatcggc gggcccaact tgccgaacgg atggcgtggg gttcggcttg
      481 ggtggactca gggaaggtgt tcacccggga gaacggggaa cgtctgcacc ccgcgatgat
      541 cagcgaccgg ttccttgacc tcgtcactgc ggcttgcttg ccgccggtgc gcctgcacga
      601 cctgcgccac ggcgcggcgt cgctcatgct cgcggccgac gtggatctca aagtggtgca
      661 ggagaccctg gggcactctt cgatcacgct caccagcgct acctacacgt cggtctaccc
      721 ggcggtcgcc gccgctgcgg ctgacgcggc tgcggccctc gcgccgagag cagtcggaac
      781 cgacgttgtc acaccgttgt cacctcacgc gtcagatgcc cgacaggaaa ccgattatcg
      841 caggtcacaa agcgcgcccg aagagattcg aactcccaac cttctgatcc gtagtcagat
      901 gctctatccg ttgagctacg ggcgcctgtt ctgttgtcgg tcagcatttg atctgaccgt
      961 ccgcggaggc tccgggattc gaacccggga gggagcgtaa cccccaaccg cattagcagt
     1021 gcggcgccat agaccagact aggcgaagcc tcccggggcc ttcgaggccg ccaggtcagc
     1081 agcgtacaca gcgtgtgcgt gatccggcaa agcgggtggc tgatcgcgca gcgtcgccat
     1141 cgtcgctggc caccgccgca gcgtcgccgg actgtcagac ccccgccgta gtgtctttca
     1201 catgaatcag ccactggcag agacggttgc agggcggccg cgggcggggc tagctcctct
     1261 agtcgcggcc tacaccggct accggattga gggcgcacga ccgggggtgc accgcggcct
     1321 gccttcgcgt tatctgacct tcatcgtcac cctcggcggc acggttgacc tcgcggccct
     1381 acccgattcc gcccaaccac ctgcctcatt cacgaccctg gccggcggcc tgcacgccac
     1441 gccggcgctg atcagccacg acggtcacca acacggcatc cagctgcacc tcacgcccct
     1501 gggggcccgt gtcctgttcg gcatgcccgc cggagaactg gccagcaccg tcgttgacct
     1561 gggcacgctg ttgggcccgg tcgctggtga gctggttgaa cggctaagag cggcccgcac
     1621 gtggaccgac cgctttctcg agctggacag cgtgctggcc cggatcgtca aacagcgaga
     1681 cggacctgct ccagaagtcg agtgggtctg gcgtcgactg accgccagcc acggccgggt
     1741 cgaggtaacc acgctggccg gagaagtggg ctggagccgg cgccacctag gcgagcgatt
     1801 ccggcgggaa ttcggcttga cccccaaggt ggcgggccga gtgatgcgtt tcgaggtcgc
     1861 ccaccgcctg ttgcggacat cgcagcgacc ggggctggcc gacgtcgcgg cccgggcggg
     1921 cttctacgac caggcccacc tgcaccgcga gtggcgggac ctggctgggt gcacaccgtc
     1981 gcaatggctg gctgaggagt tcccatctgt ccacgacggc gaagctgtcc gcacggcatg
     2041 ctcggtggca tgacggataa cactcctgcc cccaccatct ggccgtgcct gtcctactcc
     2101 gacgagcgcg ccgccatccg cttcctggtc gacgcgttcg gcttccggga gacgcttgtg
     2161 gtccccggcg atgacggccg gatcgtgcac gtggaactgc gctggcccga aggtggtggg
     2221 atcatgttcg gctccggcga cggcgagttc ggcgggaagt ccggcaacgc atcgctctac
     2281 gtggtcaccg actcccccga tgagctcttc gagcgggcca ccgcggccgg agccgaggtc
     2341 gtccgagggc tcagggacga ggactacggc tcgcggggct tcaccgtccg cgacatggaa
     2401 ggcaaccact ggagcttcgg cacctaccgc ggaacctgac caggtttgtg aagctcgcaa
     2461 cctacgcgat gggcagcagg tctgatcggg gggccggggg cgaaacgagc ccggtctggt
     2521 aagcgactgc taccgcttgc gccttctcgc gtagcccaag tttcttcatc acccgggcga
     2581 ggtgcgtctt gacggtggct tcggcaataa ccaggtgttc ggcggcgtca gcgttggtga
     2641 ggccttgggc cagcagagcc aggacttccc gctcgcggga ggtcagctga gtcatctcgg
     2701 ccgacgtggg ggtgcgtttc tcgggttgac gggcgatccc ggcaacgatc gggaaggtga
     2761 cccggggatc cagccaggct tcaccggcgg cgacggcgcg gatcgcagcg acgatctcgg
     2821 tggcggcggc gactttgagg aggaagccca cggcgccggc tcgcagcgcg gcgtggaccg
     2881 actcatcaag gtggtaagtc gtgaggatga taaccctgat gggttggcca ttccgcgcgg
     2941 tcagccgctc accaaccacc gcgcgggtcg cggcgacgcc gtcggtgccc ggcatgcgga
     3001 catccatcag gatcacgtcc ggacgctgct cccgagcttg aatcagcgcg tcctggccgt
     3061 cggcggcttc ggcgacgacc gcaatgtcct gttcggcatt gaccagcatc gccatgccgg
     3121 ctcgggccag cggctggtca tcgaccacca tgactcggat catgctggaa cctttccttg
     3181 gtcgcgttcg tacctctcac cagaatcact gtcatagctc ctcgtctcgg cgctgtgccg
     3241 ctgcgcggtg tccgcgaacg gcagtgccgc ggtcagccgg tagccgcccc ggttgggcgc
     3301 aggtcccgct tgcaggtgcc cgccgtctgc gtgagcccgt tcgcacaggc ccaacaggcc
     3361 ccgaccgttg gacagcgccc gcccgcggcg cgcttgcgcc gggttgacac cgggcttgat
     3421 gtcgttgtcg atctgaatca gcaggttctg cgcttcccag accagccgca accgggcgtt
     3481 ggaatccttt cccgcgtgtt tgaggacgtt ggtcagccct tcttgcatga tccggtacgc
     3541 ggttagatcg acgctggggt ccagggcgcg tggtgtgcca tcgacatcga cgctgaccgg
     3601 catgccggtg gcccgtagag aacccagcag cacgggcagc tccgccagcc ccgactgcgg
     3661 gccgagctca ccgaggccac cagcggtcgg gctggcgcca tcgtctgcct tcagcacacc
     3721 caggagccgt cccagctcca ccatcgcctg ttcacccgtg ctctggatgt gcccgagtga
     3781 ctcgatcacc tgggcgaggt ttgtctcggc gactcgggcc gctccggcgg cctgcaagac
     3841 gatcacggtc accgcatggg agacgatgtc gtggagctca cgggcgatcc tgttccgctc
     3901 cgcggccaac gcttcccgcg ccatcttccg ctcgtattcc aacgtttgga gccgacgctg
     3961 attggcgcgg gtcgaacggc ccgccaccca tgcaccggtg gccaggagaa cgagaaatat
     4021 gatgttgggg atgaatgcgc tgatcgcctt ggaaaaggtc gagctgacct cgaatgccac
     4081 cgccgcagct aagccggtgg gaacgaggga agccagcagc gccagcaccg acgttttcct
     4141 gctgcaatgc accgcaacgg cgtacaacga gatgggcacg ccgaccaccg gggtgtaatg
     4201 agtactgatg ggccaggcgg ccacggtgag tatccattgt gacacaaaaa cagtgaccgg
     4261 tgccttgtct cgccagacca ggaagaaaag cccaaccagc ccgtacagcc acacgaggag
     4321 taaccatgga ctggtcgaca catgaaacag ttggcgccac gaggagtaga gataacagtt
     4381 gaaaaggaag accgtcggga gcaggagcgc gtcccgcccc gcggtcggtg ggatgcggac
     4441 tcctctggat agccggccgg gaatcttcat cacgcttcct cacgcggcag gggaactgac
     4501 ctcatccatt tgctggcttg caggtagggg gatcggggca gaaaccggga caatcaccat
     4561 tgcacagttt cgcgagaggc ttcgagccag ccggcccccc gccaggagat tcggtccgcc
     4621 ggtgccacca acaagcccca ggccactctc cgttgcagtc gggaccagat ccagaagcga
     4681 gcaccggacg atcggtgctg gtcaacgcgg tggcgctcgc gacaggtgca cctcccagga
     4741 tggcaccagc agcgaggacg agcccggcgg ccgcaggcat gatgagtttg tacggcggcc
     4801 gcgccggggg gttctcccgc acgttgcccg tcggagattt gtgagaaatg ctcatcgcgt
     4861 tttcccctta tgagtgtccg gcttacgcct ggagccaccg accaatctga tcgcagcgtg
     4921 gcatgcgatc ccgaccggtc gcaaccccgt tagagtgatt ccttggcgct ttccccgaaa
     4981 cagtcgccaa tcgtcattct ccagatggag gaaccggctc gactacctca tctgatgtac
     5041 ggaaactgca tcagatgatg cacaccggaa atagtccctg ggtaccatga ccgcccggtt
     5101 gcacccgaag agtccgctgc cgacaggaac ccgcgcttcg ggaccgttcc cggcgcgccc
     5161 ccggtaggaa gtgcaccatg accataccgg ccgcgctgat cccacagatg cagagaacct
     5221 tctcggctac ctcatctgac acagcggggt acctggctga aggtagccga gaaatggtcc
     5281 gaggaaatga cgaccaatcc cccgtaaacc ctgcattctg gagtagcgct accggaccct
     5341 aatgtcacgt cccacacgta cgggagacat ccatgaccgc agtcgccgca ccgtcaacgc
     5401 cctatccttc gaaatacacg accccttttc tgctctaccc gcctgcgctg tggcgcaacg
     5461 cgatcggttc cgacttcgca cagcagcacc tcggcttgcg ggagcaagga accgactatg
     5521 tgatgtatct gtcggttccg ttctgccggg tgcgctgcca ctcgtgccca tatttcgtgg
     5581 acttgctgtc catccacgac gccaagacgc agaacaagga gcagcgctac gtcgaggcgc
     5641 tgctggccga cctggagcgc tgggccggtt atccccggtt cgccaccggc cggttgcgcg
     5701 cgatctatat cggcggcggt accggctcca ttctctcacc ggccaatctc aagcgcgtca
     5761 tcgacacggt caccaccaag tttcccctgc agccgggata cgagctgact ctcgaaggca
     5821 acgcgcgtga ctacgacggc gccaagctcg actacgtcgc ggactcgccg atcacccgga
     5881 tcagcctcgg cgtgcagtca ttcgaccccg cgatcctcaa ggtcatcgga tcgccgcacg
     5941 ccgcggagca gagcgtcacc gccatcaacg agctgcaccg acgcggattc cgcaacgtgc
     6001 agatggacat gatgtacaac cttcccggcc acacccgcca gatctggcgc agcgacctgc
     6061 aacgcctggc cgacctcgac atcgagcacc tcacgaccta tctctaccgc atccacgacg
     6121 gcaccccaca ggcgaaattc atcgcgtcgg ggaaagtgca gccgctgctg gacaaggagt
     6181 cggcctacgt caagaacatg caggccgacc tggtcgagac ggctgccgag cttggcttcg
     6241 tcaattacat gttcgaccac tacgccaagc ccggtgccga gagcatctac aacgagtgga
     6301 cattcggccg gaacatgatc gaggttctcg gtgtcggccc cggcgcctac ggattcgtca
     6361 acgactaccg gatcggcacc gccaaggacg tcgagggcta catcgcggcg gccaatcggg
     6421 gtgagcacct catcagcgcc gtctcaccga aggtagacga ccaggtacgg cgtgagcgct
     6481 acgtggtgaa cgtgctgcag tacgccagga tcgaccttga cgcctacctg caccacttcg
     6541 gcaccgagct ctccgacgac ttccctgggg tggccgacaa gctcgtcgac cgcggcctag
     6601 ccgtcctgga gggccgccgg ttgggcctga cggctctggg ccgtgagtgg cacatgaacg
     6661 tgatgctcga gttcaccaac gaccagttct ggggtgacac ctccgccctg gactccccgc
     6721 actgggcgat gaacacgccg atggtcgagc tgttcgccgg ccgccggcag gactggctcg
     6781 gctgatcttc cccagctacc cgaatcgact gccggctcag ccggcggtca gaccacgcag
     6841 gaaggaaccc catgacgatc gacccgacgc tggcgcaggt gctggccggc ctgcagatcg
     6901 gcatcaccga cgtcaccccg cagctacggc tgcgtgatga cctcggcatg gactcggcgg
     6961 agatcatcga catgatctgc gcgtgcgaaa gcgcctacgg cgtgagcatc cccgatgacg
     7021 gcacgctgct gtcccgcctg cagcgggtgt gcgacgtgct ggacctcgtg caggtctcgg
     7081 gtggcgtcct caccaccgcc gaccctgccg tcgtgaccac gatggaccag gcacccggct
     7141 tcaccgaccg ctgcgtgcag tccatcgaga tcgcggcgcc gctggaggtc gtgtacgcgg
     7201 cgctgttcga cgtcaccgcc tggccgcagc atctgccgca cgtgcacgcc atcgacctgt
     7261 gctacgacga cgggcggtac caggagttcc ggatgagcgt cgcatccggg aacgagcagc
     7321 tgctgcacgt gcggtcgatc cgcaactgcc gcccgaaggt catcgagttc ttccagcccg
     7381 aaccgccgcc ttacctgcgt caccacggcg gcgtctggcg gttcaccgcg acgtccagtg
     7441 ccagcacccg gatcgaggtc acccacgtgt ggaacctcgg cgaccggctc gccgagttct
     7501 ttcccgaacg cgacggtcgc agcggcgctc agcaggtgcg cgaggtgctc gcccagcact
     7561 cgaacctcgc gctgacccgc tggaagacgg tgctggagtc agcacccaca tccgcaatcg
     7621 ccgggctcgt cgaggtgggg gcatgaacat cagcgaaaag atcacgatcg acgtcccgcc
     7681 ccgcgatctg taccaactgt actgcgatct cgagcggtgg ccccaggtac tcgacgacgt
     7741 cgtctcggtg cagctgcact atgccgacgg ttaccaccag gagttctcga tgacggtgcg
     7801 ccggcccagc ggcgaggaga cagtgcgggg ggtgcgctac tgccgcggcc g
//
LOCUS       DASVXZ010000941         7458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1408579, whole genome shotgun sequence.
ACCESSION   DASVXZ010000941 DASVXZ010000000
VERSION     DASVXZ010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7458
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408579"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..561)
                     /locus_tag="VF788_19770"
                     /pseudo
     CDS             complement(129..561)
                     /locus_tag="VF788_19770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009084194.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            986..1354
                     /locus_tag="VF788_19775"
     CDS             986..1354
                     /locus_tag="VF788_19775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936369.1"
                     /translation="MTRTIRRTSQFAGAAAITTAATALLLTALSGTADAAVGGVILVQ
                     QLNADLIPVCTQNYITGIAAETIHDPTCAGAAYASITSTATLHPITVHTDYVTYTFNG
                     LYVTPLGPHGLDIDAPGGVG"
     gene            complement(1661..1939)
                     /locus_tag="VF788_19780"
     CDS             complement(1661..1939)
                     /locus_tag="VF788_19780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936370.1"
                     /translation="MAEIISGMSSDPLGYFARMHQRSVALVHHVLRNDPVAAAVLLSE
                     VEGTDAAAAQIISLAQLCGLILAQLPAGERESLINKAAMALAAAAAES"
     gene            complement(2106..2513)
                     /locus_tag="VF788_19785"
     CDS             complement(2106..2513)
                     /locus_tag="VF788_19785"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX8936371.1"
                     /translation="MTAHRRRRCNTTLAARWTKDGSLQKLSGRQGTIGVALPWFPELT
                     SAVELARRQTCAADQADPVAQYFTALNEGDSRALETVWPGEVVIHDPRAGEIRGHKQL
                     RRFVSQNQSWLAERHARIETVASTCVGGGPWST"
     gene            complement(2485..3996)
                     /locus_tag="VF788_19790"
     CDS             complement(2485..3996)
                     /locus_tag="VF788_19790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936372.1"
                     /translation="MSFGTRYTGSAGHSSYVDWLSEHFAAIPGFTLKRDRLTFNRWLA
                     RDYSLSLTTPTAANHRPVPVTYYYPYSGKTPDVGVTGKLVDLGGYPPAALGSSGTGYT
                     PEFWAPARGAIAVVRAAPSTFSLATGQIATGGYEPGKTSAQTAADYETYATTALTNPA
                     WQGIFNPIPLLDAKNAGVLGVVCVWTGMPDDEVINQYNPFTSPYPSASGLATPEDAGC
                     PALWVGDSTGSELAQEAATGEASATLVLTAEVTVGAATETIWGWLKGSGSTDETIILN
                     THTDGPNATEENGGLGLLALAKHLARLPSRNRDLYFALVTGHFQLPQFTRPIPNARPV
                     VGTDATSVWILDHPDISRRAVAGVTVEHLGCTMWMDDPVVGTYAATGGYEWGTTYTAQ
                     RRNAVNTVNTERNAYLSAVADVSESGWPNFPTATVLPGSIPLYLGEGAPLYAAGLGTV
                     SLIPMPTYLLQAGDAQHPEQLDLDKLDKNLMYGQILTCAKTIETLDRTPAKAL"
     gene            complement(4182..5243)
                     /locus_tag="VF788_19795"
     CDS             complement(4182..5243)
                     /locus_tag="VF788_19795"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX8936373.1"
                     /translation="MSTDPANVRTAIVLQGGGALGAYEFGVLKALYDQRPGFKPAAVA
                     GISIGAITAAVLGGARGEPIAALEALWRDKLTVHPSVPGLPGMTIPFMPREIEKSLAA
                     FGNPGMYGLNPQLLMAPWATTSIYHTGPLRQTLAELADLDKLNHGGIRVIVGAMDVET
                     ALIRYFDNAKHDLTFEHVAASGSLPPSFPMTEIDGQWYWDGGLFTNTPLSPAINFLES
                     CEPDNPDIHRELIVVDLFPMKAPVPQSMLDVINRMTQLQYTSRIKLDKKLFDKIDKVI
                     KLIERVDAELPAKSPLRRDKDYKTMLSYRRIDSFKVIDAELGRDLANASDFSRSSIEG
                     RIEAGYDDAKRQGVASHLS"
     gene            5462..>7458
                     /locus_tag="VF788_19800"
     CDS             5462..>7458
                     /locus_tag="VF788_19800"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8936374.1"
                     /translation="MPRGWPLTGRADELSRISELTRRRDGPAGIVLAGPAGVGKTRLA
                     RETLAAVEQRGALIRWAVATASARALPLGAFATTLGVVGLDPARLVRLASEALLVGAG
                     QAGVIVGVDDAHLLDELSAVLVHQLVLRRAATVVLTLRTGETAPDAVTALWKDGHLPR
                     LELQPLSEDETATLLEATLGGPVDSATARRLWSITQGNALYLRQLVDGELESGRLHQV
                     AGVWRWSGKLALSPGLVELVSARIGQLPEVQRDVVEVLAFGEPLGISLLAELTDAVAV
                     EQVEARGLVEVYLDGRRLQARLAHPLYGEVQRAQIGMLHARRLRGRVASALGATGGRR
                     AGDTLRRAVLMLDSDLPPDSVLLTDAARRATELGDLTLARRVARAAVSAGGGFEPRLL
                     LGNALSWSGRGAEAEAEQAALSALAGTDAQRAQAAIPRVITSAWFFGRPAEAEAVLDT
                     AARTISDDAAALEVAGMRSVLDAYLGRTVQAAEAAARVLSHPRCSPAATQLAGWGLAT
                     ARGGLGRLEGIEETLRRIDAHGTSFVIGLHELAVIAFWWVRGLLLAGLLDRADQAARH
                     YRERCQDAPGYGAAITSLMRAAVAMSRGQVRTAARWYREAIAAIQGVDPGGLAFRGLV
                     SLTGALGMAGDATAARQALVDMTAAWHPTSVCLEPEAVLAQA"
BASE COUNT         1212 a         2312 c         2561 g         1373 t
ORIGIN      
        1 ccacctgttc cgtccacgca caccggggca gccagcagca ggcatggcca cacccaccaa
       61 ccctactctg gcatgccggc aacggaagag cactgaacac cggcggcgcg atggcagggg
      121 gcggtgcatc aactgatggc atccaacaac atcgcacaac gaatcaggcc gaggtgagag
      181 tatgcctggg ggtggtgccc aatgagcgct ccgcgatcag gtcgtactcc tcaggaaaca
      241 gtccggtcgg ccctgtggcg tccacgatct gctggaacag ctcctctgcc tcggtgcgcc
      301 gcccgcaacc caggtaagcc tcgaccaacc acgatacgca caggtggaag ccaccctcac
      361 cgccgggcag cgcgtcgtcg cggttgtacc ggtaggcagt cgagccgctg cgcagctccg
      421 cctcggccat ggcctgcatc attcgccagt cggggtcggt caattccctt gagactcagc
      481 gagatcggcc accggcccga aaacgtcgag ctgcacctgc tggttggccg cgttggatat
      541 ccgcaccggc cgcgagccag cggtggtggt cgccggcagt gcggcgagtg agcgcagtgc
      601 ggtcactgac tccggtaccg ggacggcccg ctggggaccc gcaatgatcc cggcgagcgt
      661 gccgtcatgg tcgcaggcca ccagcagccg cggtgttctc gccagctgag ccagtgcgcg
      721 gcgcaactcc atcgtcagca tatctgcggt cactcacgga cggtatgagg caagggtgac
      781 gccggtgtgt cgttggcgtt tccaccagcc actgcggtgc cggcctcgat cgaacggctg
      841 gctgtccctt gtgaagccac ccgccgtcct cccctcagct gccagacctc ttccgttcat
      901 ttccgagagt cagcgttcca ttcctagtaa ttgagggcgt gggggtggcg tcgctcggca
      961 gctctacaac aggagatcgg tgaccatgac gagaacgatc cgccggacca gccaattcgc
     1021 cggagcagcc gccattacaa cagcggcaac ggcgttgctg ctaaccgcgt tgtccggtac
     1081 cgccgacgcc gccgtcggcg gcgtcatcct cgttcagcag ctcaacgcag acctcatccc
     1141 tgtatgcacg cagaactaca tcaccggtat tgcggcggaa actattcacg accccacctg
     1201 tgccggtgcg gcctacgctt cgatcaccag cacggcgact cttcatccga tcaccgttca
     1261 cactgactac gtcacgtata catttaacgg gctttacgtc accccgttag ggcctcacgg
     1321 tctcgacatc gacgcgcccg gcggggtggg gtagacctct tagccgtcgc gctcaccgga
     1381 taccagcagc agacatcttc ggccaccatg ccgccgccgt tcatgcggca ccggagtcgt
     1441 cgttctggct ggtggcgcgg cggttatcga gcggcactct cttcagagtc gtaccggttc
     1501 ccgttggatt atggatgtca atcgggtaag cgccgcgggc gatggcgtcg gggaaggacg
     1561 cgtcgcgaag aacaggacgt cttcacgagg caactcgagc tcaccagcct ccgtggcctc
     1621 ttgaccagct cccacaaccc gtgcggttcc gcacggagga ttaggattcc gcggcggcag
     1681 cggccagcgc catagcagcc ttgttgatca atgactcacg ctccccggca ggcagctgcg
     1741 ccagtatcag gccgcagagc tgcgccagag agatgatttg cgcggcagcg gcgtcggttc
     1801 cctcgacttc cgacagcaac acggcggcgg cgacgggatc gttgcggagc acgtgatgga
     1861 ccagggcgac gctgcgttgg tgcatgcggg cgaagtagcc gaggggatcg gaagacatgc
     1921 cggaaataat ctcggccacg caggagggcc aacatgggga tttgactgga attctgcggt
     1981 gggtaagcgg gcctctcctg gcactcgggg gcgtctaccc cggagaatct ccttcggctc
     2041 ggggattctt ccccgtggcc atgcagtgac ctgggcgacc ccttcgtgat cttgtccttg
     2101 ccgatctacg tggaccacgg cccgccgccc acgcacgtgg aagccacggt ctcgatacgg
     2161 gcatggcgct cggccagcca ggattgattc tggctgacga accgccgcag ttgcttgtgg
     2221 ccgcggatct cgcctgcgcg ggggtcgtgg atcaccacct cgcccggcca cacagtctcc
     2281 agagcgcggg agtcaccttc gttcagcgcg gtgaagtact gcgcgaccgg atcagcctgg
     2341 tctgcggcgc aagtctgcct gcgtgccagc tccacggcgc tggtgagttc cggaaaccac
     2401 ggcagcgcaa cccctatggt cccttgcctg ccggacagtt tctgcagact gccgtccttt
     2461 gtccaccgtg ccgcaagggt agtgttacaa cgccttcgcc ggtgtgcggt caagcgtctc
     2521 gatcgtcttg gcgcatgtca ggatctgacc gtacatcaga ttcttatcca gcttgtccag
     2581 gtccagctgt tcggggtgtt gagcatcacc ggcctggagc aggtaggtgg gcatggggat
     2641 gagtgacacc gtcccgagcc ctgcggcgta gaggggggcc ccctcgccga gatacagcgg
     2701 aatggagccc ggaagcacag tggcggtcgg gaagttgggc caaccgcttt cgcttacgtc
     2761 agcgacggca gaaagatagg cgttccgctc ggtgttgacg gtattgacgg cgtttctccg
     2821 ctgcgccgtg tatgtggtac cccactcgta gccaccagtt gccgcgtacg ttcccaccac
     2881 tgggtcgtcc atccacattg tgcaaccgag gtgttcaacc gtgacacccg ctaccgctcg
     2941 tcgggagata tccggatggt cgaggatcca gacgctggtc gcgtcagtgc ccaccacggg
     3001 ccttgcgttg ggaatggggc gggtgaactg gggtagttga aagtgacccg tgacgagggc
     3061 gaaatagaga tcacggttgc gagagggtag ccgtgcgagg tgcttcgcta gtgcgaggag
     3121 tcccagtcct ccgttttcct cggtggcgtt ggggccgtcg gtgtgggtgt taagaatgat
     3181 ggtttcatcg gtcgatcccg agcccttcag ccatccccag atggtctcgg ttgctgcacc
     3241 aacggtgacc tccgcggtga gcacgagggt ggcggaagcc tctccggtcg cggcttcctg
     3301 ggctaactcg gatccggtgg agtccccgac ccatagcgcg gggcatcccg catcctcggg
     3361 ggtggccaag ccggaagcgg atgggtacgg actggtgaac gggttgtact ggttgatgac
     3421 ctcgtcatcg ggcatacccg tccagacgca taccaccccg agcactccgg cattcttggc
     3481 atcgagcagg ggaatggggt tgaagattcc ctgccaggcc ggattggtca gtgcggtggt
     3541 ggcatacgtc tcgtagtcgg cggcggtctg ggcggaggtc ttgcccggct cgtaaccgcc
     3601 ggtcgcgatc tggccggtgg cgagtgagaa ggtggagggc gcagcacgca cgacagcgat
     3661 ggcgcccctc gccggtgccc aaaactcggg ggtgtagccg gtgccggagg aacccagggc
     3721 ggccggcgga tagccgccaa ggtcgacgag cttgccggtg acgccaacgt ctggagtctt
     3781 gcccgagtac gggtagtagt aggtaaccgg aacggggcgg tggttggcgg cggtgggcgt
     3841 agttagcgag agagagtagt cgcgagccag ccagcgattg aaggtgagac gatctctctt
     3901 cagcgtgaac cccggaattg cggcgaagtg ttctgaaagc cagtcaacgt agctggagtg
     3961 tccggcactg cctgtgtacc tcgtcccgaa actcacaagc tggttctgcc acttccatat
     4021 ctcgtccgca ctcggaatac ccccggtcga atatgagctt cccaggcgca ggagtgcgcg
     4081 atcaccgcgg gctgacgtag gcatggtgcc ctcccaagca tcaaaatcga tgttaagctg
     4141 ctgccaccac gttgtggttc cacatcgagg ccgatcgcaa tttatgacaa atgtgaggcc
     4201 acgccttggc gcttggcgtc gtcgtaaccg gcctcgatcc ggccctcaat cgatgaccgg
     4261 gagaagtcgc tggcgttggc caggtcgcga ccgagttcgg cgtctatgac cttgaagctg
     4321 tcgatcctgc ggtaactcaa catggttttg tagtccttgt cccgtcgcag cgggctcttg
     4381 gctggcaact cagcgtcgac gcgctcgatg agcttgatca ccttgtcgat cttgtcgaag
     4441 agcttcttgt caagcttgat ccggctcgtg tattggagct gcgtcatcct gttgatgacg
     4501 tcaagcattg actggggcac gggggctttc atggggaaca ggtcgaccac gatcagttcc
     4561 cggtggatgt cgggattatc cggctcgcac gattccagga agttaatggc tggactgagc
     4621 ggggtgttgg tgaaaaggcc tccgtcccag taccactgtc cgtcgatttc ggtcatggga
     4681 aacgagggtg gaaggctgcc gctggccgcc acatgctcaa aagtgaggtc gtgcttggca
     4741 ttgtcgaaat acctgatcag tgcggtttcg acgtccatgg cgcccacgat cacccggatg
     4801 ccgccgtggt tgagtttgtc gagatcggcc agctccgcca gcgtctggcg tagcggcccc
     4861 gtgtggtaga tgctcgtggt cgcccacggc gccatcagca gctgggggtt cagcccgtac
     4921 attccggggt tgccaaaggc cgccaaggat ttctcgatct cgcggggcat gaacgggatt
     4981 gtcatacccg gcaggccggg cacgctgggg tgaaccgtca acttgtcgcg ccatagcgcc
     5041 tcaagagcag cgatgggctc gccccgggcg ccgccgagca cggcggcagt tatggcaccg
     5101 atcgagattc cggccactgc tgccggtttg aaccccggcc gctggtcgta gagggccttg
     5161 agcacgccga actcgtaggc gcccagcgcg cctcccccct gcaggacgat agcggtccgg
     5221 acgttggccg ggtcggtaga catcgcaact ccccttgcgc acggcgtagt agatcatcat
     5281 ttcccgggcc aggatcaggt ctcggggata cttgctacta gtcagagacc gcaatgcggc
     5341 tgctgatacc tcatctcatc cggatttcgc cgctgtcacc cagcgagggt gctgcatata
     5401 cagcggcaaa tccttatccg tactttccgc agccgtgtcc tggaacccct accatttggg
     5461 tgtgccgcgg gggtggccgc tgaccgggcg ggccgatgag ctgagtcgga tcagcgagct
     5521 gacccgtcgc cgggatgggc cagcggggat cgtgctggct gggccggcgg gggtgggcaa
     5581 gacccggctg gcccgggaga cgctggctgc ggtggagcag cgcggcgcgc tgatccgatg
     5641 ggcagtggcg acggcctcgg cgcgggcgct gccactgggc gcgttcgcca caacgctggg
     5701 ggttgtcggc ctcgatccgg ccaggttggt acgcctagcg agcgaggcgt tgctggtcgg
     5761 tgcggggcag gccggtgtga tcgtcggggt ggacgacgcc catctgctcg atgagctctc
     5821 cgcggtgctg gtccaccagc tggtgctgcg ccgggcagcg actgtggtgc tcacgttgcg
     5881 cactggagaa acggcgccgg atgcggtgac ggcgttgtgg aaggacgggc acctgccgcg
     5941 actggaactg cagccgctgt ccgaggacga gaccgcgacg ttgctggagg cgacactggg
     6001 tggtccggtg gatagcgcca ccgcgcgccg gttgtggtct atcactcagg gaaatgcgct
     6061 gtacctgcgg cagttggtcg acggtgagct ggaatcaggc cggttgcacc aggtcgccgg
     6121 ggtgtggcga tggtcgggga agcttgccct atcgcctggg ttggttgagt tggtgtcagc
     6181 ccggatcggt cagctgcctg aggtgcagcg agacgtcgtg gaggtcctgg ctttcggtga
     6241 accgctgggc atatcactgc tggcggaatt gactgatgcg gtggcggtgg agcaggtcga
     6301 ggctcggggc ttggtggagg tgtacctcga cgggcggcgg ttgcaggccc ggctggccca
     6361 cccgctttac ggtgaagtgc agcgggcgca gatcggcatg ttgcacgcgc ggcggctgcg
     6421 cggccgggtc gcctccgccc tgggcgctac cggtgggcga cgggccggcg acacgctgcg
     6481 tcgggcggtg ttgatgctgg actccgatct gccaccggac tcagtgttgc tcaccgacgc
     6541 tgcccgccgg gccaccgaac tgggggacct cacgctggcc aggcgggtcg cgcgggccgc
     6601 ggtgagcgcc ggtggtggtt tcgagccacg gctgctgttg ggcaacgcgc tgagctggtc
     6661 tggccgcggg gctgaggccg aggccgagca ggccgcgctg agcgcgctgg ccggcaccga
     6721 tgcgcagcga gcccaagcgg cgatcccccg ggtaatcacc tcggcctggt ttttcggccg
     6781 tcccgccgag gccgaggctg tgctcgacac cgcagcgagg accatttccg acgacgccgc
     6841 cgccctggaa gtggctggca tgcgatcggt tctcgatgcc tacctgggcc ggactgtcca
     6901 ggccgccgaa gcggccgcca gggtgctcag ccatccccga tgctccccgg ccgcaacgca
     6961 actggccggg tggggtctcg cgacggcacg cgggggactg ggccgcctcg aggggattga
     7021 ggagaccttg cggcggatcg acgcccatgg cacgtccttc gtgatcgggc tgcacgagct
     7081 ggctgtcatc gccttctggt gggtgcgtgg gctgctcctg gcgggcctgc tggaccgagc
     7141 cgatcaggcc gcgcgccact accgtgagcg ctgccaggac gcccccgggt atggggccgc
     7201 gatcaccagc ttgatgcgcg cggcggtagc gatgtcccgc ggacaggtcc gcaccgccgc
     7261 gcgctggtac cgggaagcta tcgccgccat ccagggtgtg gaccccggcg gcttggcgtt
     7321 ccgcgggctg gtcagcctca ccggcgcgct cgggatggcc ggtgacgcga ctgcggcacg
     7381 ccaagccctt gtggatatga cggcagcgtg gcatccaaca tccgtctgcc tggaaccgga
     7441 ggcggtcctc gcccaggc
//
LOCUS       DASVXZ010000942         1625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1156143, whole genome shotgun sequence.
ACCESSION   DASVXZ010000942 DASVXZ010000000
VERSION     DASVXZ010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156143"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1376)
                     /locus_tag="VF788_19805"
     CDS             complement(<1..1376)
                     /locus_tag="VF788_19805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020646735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936375.1"
                     /translation="MSTAPPKTSDPVRSLIPARIDRFPWSPFHTRMVIALGVAWILDG
                     LEITVASAVGDILNKPETLNLSSTEVGLVATVYLVGEVVGALVFGRMSDRLGRRNLFM
                     ITLGVYLVGSGLTALTLGSGTAWVVFLYVTRFIAGTGIGGEYAAINSAIDELIPARYR
                     GRVDIAVNGTYWAGAIVGTLGTFVLLNVLTPSVGWRIGFLIGPVLGLVILLVRRNLPE
                     SPRWQIMNGREQAAERSISYIEHEVAQSGKTLPKVDESKAIDLRPADQIGYLALTRVL
                     FREYPSRAILGASLMVSQSFLYNAIFFTYTLVLGKFYGVPATSTSLYLIAFAVGNLLG
                     PLTIGHFFDTIGRKTMIAGTYIGSGILLAISAWLFNAGLLTATTQTISWCVIFFFASA
                     GASAAYLTVSEIFPLEVRAKAIAVFFAIAQCFGAVGPVVYGALIGDGSQPFKLFLGYL
                     LGAAVMIAG"
BASE COUNT          332 a          496 c          510 g          287 t
ORIGIN      
        1 ccggcgatca tcacggccgc gccgagcagg tatccgagga acagcttgaa cggttgcgag
       61 ccgtcgccga tgagcgcgcc atagacgacc gggcccaccg caccgaagca ctgcgcgatg
      121 gcgaagaaca ccgcaatcgc tttcgcccgg acctccagcg ggaagatctc gctgacagtg
      181 aggtatgcgg cgctggcgcc cgcggaggca aagaagaaga tcacacacca ggagatggtc
      241 tgggtcgtcg cggtgagtag tcccgcgttg aacagccaag cgctaatggc cagcaggatc
      301 ccggaaccga tgtacgtgcc ggcgatcatg gtcttgcgac cgatcgtgtc gaagaaatgc
      361 ccgatggtca gcggcccgag caagttgccc accgcgaagg ctatgagata aagggacgtc
      421 gacgtcgccg gcacaccata gaacttcccg agcacaaggg tgtaggtaaa gaagatcgcg
      481 ttgtacagga aagactgact gaccatcagt gatgcgccca gtatcgcgcg actcgggtac
      541 tcccggaaca gcactctggt cagcgccaga tagccgatct ggtcggccgg ccgcaagtcg
      601 atcgctttgc tctcgtcgac cttaggcagc gtttttccgg actgcgcgac ctcgtgctca
      661 atgtaggaga tcgatcgctc ggcggcttgc tcgcggccgt tcatgatctg ccatcggggg
      721 ctttccggca ggttacgccg caccagcagg atcactaagc ccagtacagg tccaatgaga
      781 aaaccgatcc gccagccgac gctcggcgtc agcacgttaa gcagcacgaa cgtgcccagc
      841 gtgccgacga tcgcgcctgc ccagtaggtg ccgttgaccg caatgtcgac tcgcccgcgg
      901 tagcgagcgg ggatcagctc gtcgatcgcg gagttgattg ccgcgtattc accaccaata
      961 ccggttccgg cgatgaaccg cgtcacgtac aaaaagacaa cccaggccgt accgctgccc
     1021 aatgtcagcg cggtgagacc gctaccgaca aggtagacac ccagcgtgat cataaacagg
     1081 ttgcgtcggc cgagcctatc ggacatccgg ccgaatacca gcgcgccgac gacctcaccg
     1141 accagataca ccgtcgcgac gagccccact tcggtggatg acaggttcag cgtctcgggt
     1201 ttgttgagta tgtctccgac ggcactcgcg actgttatct cgaggccgtc gaggatccag
     1261 gccaccccta acgcgatcac catccgggtg tggaacggcg accagggaaa ccggtcgatt
     1321 cgcgccggga tcaggctccg caccgggtca gacgtcttag gcggtgcggt gctcattggt
     1381 gcctcctggg gcgtgcgcgg cctcgtggag taccccgcgc aacggctcct ctaacggtct
     1441 ggggctaccg catgcgcccg aatggtcggg tttgagatcg atcaacggcg ggaactcctg
     1501 tggccagtag ctcccgacta cgggaagcat ctggcaaagg atggtggagt catgggtttg
     1561 atcatcggct tgctggtgtt gtgggttgtg ttggtcatca tcgggttcac cgtcaaggcc
     1621 ttgct
//
LOCUS       DASVXZ010000943         2868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1500210, whole genome shotgun sequence.
ACCESSION   DASVXZ010000943 DASVXZ010000000
VERSION     DASVXZ010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1500210"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..833
                     /locus_tag="VF788_19810"
     CDS             <1..833
                     /locus_tag="VF788_19810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009947311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX8936376.1"
                     /translation="TGQVLRPLHEVTATARRLSAESLDQRLRLPGPRDEVAELADTFD
                     AVLDRLQAAFQSQRRFVANASHELRTPLAVVRTEVDVTLADPAADEAELRRMAVVIRD
                     ATLRAQQLVDGLLLLARTEGGALRTREPADLAGLAGAALRIVAPEVRNRDLRVTTRMT
                     PALTVGDPALLERVVGNLVENAVRHNVCGGWVKICTDRAGPQVTLRVSSSGEMVPAEA
                     VSDLFEPFHRGGVARTSHDGAGLGLSIVRAVVAAHAGTVHAEPVAGGGLAVTVQLPAA
                     "
     gene            complement(840..2006)
                     /locus_tag="VF788_19815"
     CDS             complement(840..2006)
                     /locus_tag="VF788_19815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015800388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HRDC domain-containing protein"
                     /protein_id="HEX8936377.1"
                     /translation="MPPVVASAGALAAAVDALSSGSGPVAVDTERASGYRYWQRAYLV
                     QLRREGTGTVLIDPIGLDDLSGLAGVLNPLEWVLHAASQDLPCLAELGLRPAAVFDTE
                     LAARLSGLDRVGLAALVEELLGYQLLKGHGAADWSRRPLPAEWLTYAALDVELLLPLR
                     AAIAAELDAQGKSSWAAEEFEAVRTAGPPPPRVDPWRRTSGMHRIQRPRELAAVRELW
                     QARDQLARQRDIAPGRVLPDAAIIDAALADPPDAAALLSRPVYSGRSQRRHVRTWMSA
                     LETARALPVSQLPSLRAQGTNPPPVNRWSDRDPAAAIRLAAARATLTEIAQQHRLPVQ
                     NLLAPDLIRRLCWEPPEPLDAAAIEQQLVAGGARRWQCELTTHPLATALKLTTG"
     gene            complement(2048..2764)
                     /locus_tag="VF788_19820"
     CDS             complement(2048..2764)
                     /locus_tag="VF788_19820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005439383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX8936378.1"
                     /translation="MAAVGYGATVRSAPSGAVPASMVPHPREELFTVLVVDDHPLLRE
                     AIASRLVTMGAVTVHEAASVAEARTRALASGPCDLAILDLTLPDGSGLDLIGELRGQG
                     WTRIVVLASSDDPHAVRTAFQSGAQAYLLKSASASVVTDGVRRVLEGGVYADPTVAPI
                     LASGTRVAGTDNTPRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRK
                     LGTGDRAQMVALAMRAGVIR"
BASE COUNT          451 a          996 c         1011 g          410 t
ORIGIN      
        1 tcaccggcca ggtgctgcgt cccttgcacg aggtgaccgc caccgcccgc cggctgtccg
       61 cggagtcgct ggaccaacgg ctgcggctgc ccggaccgcg ggacgaggtg gccgagcttg
      121 ccgacacttt cgatgccgtg ctcgatcggc tgcaagccgc cttccagtcg caacgccggt
      181 tcgtcgcgaa cgccagccac gagctgcgaa cgccgctggc ggtcgtgcgc accgaggttg
      241 atgtgacgct ggcggatccc gcggctgatg aggccgagct gcgccggatg gctgtggtga
      301 tccgcgacgc gacgctgcgc gcacagcagc tggtggacgg gctgttgctg ctggcgcgga
      361 ccgagggcgg cgcgctgcgg acccgggaac cagcggatct cgccggtttg gccggtgccg
      421 ccttgcggat cgtcgcgccc gaggtgcgaa accgggacct gcgcgtgacc acgcggatga
      481 cgccggcttt gacggtgggg gacccggcac tgctggaacg ggtggtgggc aacttggtgg
      541 agaacgcagt gcggcacaac gtgtgcggcg gctgggtgaa gatctgtaca gaccgggcgg
      601 ggccgcaagt gacgctgcga gtcagcagct caggcgagat ggtcccggcg gaggcggtca
      661 gcgacctgtt cgagccgttc caccgtggcg gggtggcccg cacctcccat gatggagcgg
      721 ggttgggcct gtcgatcgtc cgcgccgtgg tggccgcaca cgcaggcaca gtgcacgctg
      781 agccggttgc tggtggcggg cttgccgtga ccgtgcagct acccgccgcg tagggaggcc
      841 tatccggtgg ttaatttgag ggctgtggcg agcgggtgcg tggtcagctc gcactgccac
      901 cgccgagccc caccggcgac aagctgctgc tctatggcgg cggcatcaag cggctccgga
      961 ggttcccagc acaaccgacg gatcaggtcg ggtgccagca ggttctgcac cggcagccgg
     1021 tgctgctggg cgatctcggt cagcgtggca cgcgccgcgg ccaaccggat cgctgcggct
     1081 ggatcccgat ccgaccagcg gttcaccggg ggcgggttgg tgccttgggc acgcagcgat
     1141 ggcagctggc tcactggcaa ggccctcgcg gtctccagcg cactcatcca ggtccggaca
     1201 tgccgccgct gcgaacgccc gctgtacacg ggccgggaca gcagcgcggc agcatccggc
     1261 gggtcggcca gcgccgcgtc gatgattgcg gcatcaggta acacccgccc gggggcgatg
     1321 tcacgctgcc gagccagctg atcgcgggcc tgccacagct cacgcaccgc ggccaattca
     1381 cggggacgct ggatgcgatg catgcccgag gtccgtcgcc acgggtcaac ccgcggcggt
     1441 ggtggcccag cggttctcac cgcttcgaat tcctccgcgg cccagctcga cttcccctgg
     1501 gcgtccaact ccgcggcaat cgcagcccgc agtggcagca gcagctcaac atccagcgcc
     1561 gcgtaggtca gccattccgc aggcagcggt cgccgggacc agtcggccgc accgtgtccc
     1621 ttcagcagct ggtaacccag cagctcttcg accagtgccg ccagcccaac ccggtcaagt
     1681 ccggacagcc gggcagccag ctccgtgtcg aacaccgcag cgggccgcag ccccagttcc
     1741 gcgagacagg gcaggtcctg ggaggcggcg tgcaggaccc actccaatgg gttgagcacg
     1801 ccagcaagac cggacaggtc gtcgagaccg atcgggtcga tgagcacggt gcccgtgccc
     1861 tcgcgccgga gctgtaccag gtacgcgcgc tgccagtagc gataacccga tgctcgttcg
     1921 gtgtccacag ccaccgggcc gctgccgctg gacagcgcat caaccgcggc agccagagca
     1981 cccgcggagg cgacgaccgg gggcaccccg gcggccggta ccagtaatgg aaccggagtg
     2041 gtctcggtca gcggataacc cccgcacgca tcgcgagagc gaccatctgc gcccgatcac
     2101 cagtgccgag cttgcgccca atccgggaca ggtggctctt gaccgtcagc gcggacaggc
     2161 tcaacgcttc accgatctcc ttgttggact ggccgtcggc gaccagttgg agcacctcca
     2221 cctccctggc cgacagttcc cggggcgtgt tgtcggtgcc cgcaacccgg gtcccagagg
     2281 ccaggatcgg cgcgacggtc gggtccgcgt acaccccgcc ctcgagtacc cggcgcacgc
     2341 cgtcggtgac caccgaggcg gacgccgact tgagcaggta ggcctgggcg ccggactgga
     2401 atgcagtgcg cacggcgtgc ggatcgtccg acgacgcgag caccacgatg cgggtccagc
     2461 cttgcccgcg cagctcgccg atcagatcca gcccactgcc gtcgggcagg gtcagatcga
     2521 gaatcgccag atcgcacgga ccggaggcca acgcccgggt ccgggcctca gcgaccgatg
     2581 cggcctcgtg caccgtgacg gctcccatcg tcactaagcg tgatgctata gcctcacgca
     2641 gtaacggatg gtcgtcgacc accagcacag tgaacagttc ttcccgcgga tgcgggacca
     2701 ttgacgccgg cacggcgccg gatggggcgg acctgacggt cgcgccgtat ccgacagcag
     2761 ccacgtagct acctccctgg agtcggtcgt gcccccgacc gcaccgggac ctcgtccgag
     2821 caaccgcgcc gccgctcgag cgaggatggt gtcgtacggg gcagacta
//
LOCUS       DASVXZ010000944         3624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1408962, whole genome shotgun sequence.
ACCESSION   DASVXZ010000944 DASVXZ010000000
VERSION     DASVXZ010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3624
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408962"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1268)
                     /gene="hemL"
                     /locus_tag="VF788_19825"
     CDS             complement(<1..1268)
                     /gene="hemL"
                     /locus_tag="VF788_19825"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015105397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEX8936379.1"
                     /translation="MNTTESARLFQRANAVIPGGVNSPVRAFRAVGGTPRFMVRAAGP
                     YLWDADGNRYVDLVSSWGPMILGHAHPAVVDAVRASATQGLSFGTPTAGETELAEEIV
                     RRVQPVEQVRLVNSGTEATMSAIRLARGITGRPVVVKFAGHYHGHVDALLVAAGSGVA
                     TFGLPSSPGVTGAQAADTVVLPYNDLDTARALFVARGPEIAAVIAEAAAGNMGAVAPE
                     PGFNAALRELCHAHGALLILDEVMTGFRVSPAGWFGLEQVPADLYTFGKVMSGGLPAA
                     AFGGSAQHMAYLAPAGPVYQAGTLSGNPVAVAAGLATLRAADDEVYARLDAAAARLVG
                     LLDVALDATGVPHVVQTAGSLLSVLFTSCGAVRDYAGVQDTQTWRFPAFFHALLEHGV
                     YAPPSAFESWFVSAALDDEAFEVIAAALPHA"
     gene            complement(1273..1533)
                     /locus_tag="VF788_19830"
     CDS             complement(1273..1533)
                     /locus_tag="VF788_19830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936380.1"
                     /translation="MEFTTPTRRPLRVAAAVVEVLAALMLAGLAWWCWHRGVIVTVRR
                     GVAMNRIDGRWWAIATGVATLAGLLLLDAGRHVRVYVSQTTP"
     gene            1584..1742
                     /locus_tag="VF788_19835"
     CDS             1584..1742
                     /locus_tag="VF788_19835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936381.1"
                     /translation="MIAETLLTMIRETEIERLLERQHGAVSPARLRKAEVSMNTVNAW
                     IRPGRLGS"
     gene            complement(1809..2342)
                     /locus_tag="VF788_19840"
     CDS             complement(1809..2342)
                     /locus_tag="VF788_19840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936382.1"
                     /translation="MTTIQPPSDPREEQRPAPLDGYQATGTPSRGPRPSSVEVSFWIW
                     VTYLTIGAINAVIGFIQRDRNRAEAIDAVIAQYPAMDRATIESIATVVVVGVAVIGLL
                     IVAVGFGSAHLMRGGRNWARIVLAALGCLSVLFLIGPVVTPMQALFQLLLLIAAIVMM
                     FQRPANEWFRPRRRTAP"
     gene            complement(2395..3366)
                     /gene="hemB"
                     /locus_tag="VF788_19845"
     CDS             complement(2395..3366)
                     /gene="hemB"
                     /locus_tag="VF788_19845"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016701325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEX8936383.1"
                     /translation="MYPTSRPRRLRTTAAMRRLVGETTMAAHQLVLPVFVKQGAREPV
                     PISSMPGVVQHTRDSLRKAAAEAVAAGLGGIMLFGVPTTRDATGSGGIDPDGVLNAAL
                     RDVHAEVGDDIVIMADTCLDEFTDHGHCGLLNAAGQVDNDATLAVYAQMAVAQVQAGA
                     HLVGLSGMMDGQVGVIRDALDAAGEHNAGILAYSAKYASVFYGPFRDAVESTLCGDRL
                     TYQQDPANSREALRETALDLAEGADIVMVKPAMAYLDVLHAVAEISDVPVAAYQVSGE
                     YSMVEAAVARGWLDRRRAVLETLTSIRRAGADLVLTYWAVQAAGWLH"
     gene            complement(3429..>3624)
                     /locus_tag="VF788_19850"
     CDS             complement(3429..>3624)
                     /locus_tag="VF788_19850"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020668590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEX8936384.1"
                     /translation="HARTIVACIGPATAETAVEFGLRVDVQPEVAQIGPLVDALADHA
                     AQLRAAGALPPPRKAKTRRR"
BASE COUNT          637 a         1294 c         1183 g          510 t
ORIGIN      
        1 gcatgtggca gggccgcagc gatgacctcg aaggcctcgt cgtccagcgc cgccgagacg
       61 aaccaggact cgaaggcgct cggaggggcg tagacgccat gttcgagcag ggcgtggaag
      121 aacgccggga agcgccaggt ctgcgtgtcc tgcacgccgg cgtaatcgcg caccgccccg
      181 cagctggtga acaacacgct gagcaaggac cccgcggtct gcacgacgtg cggcacaccg
      241 gtggcgtcca gcgccacgtc tagcaacccc accaatcggg cggccgcggc atccagccgg
      301 gcgtagacct cgtcgtccgc agcccgcagc gtggccagtc cggcggccac cgccaccggg
      361 ttcccggaca gcgtgcccgc ctgatacacc ggcccggccg gcgccaggta cgccatgtgt
      421 tgcgcggagc caccgaacgc cgccgccggc aagccgccgg acatcacctt gccgaaggtg
      481 tacaggtcgg ccggcacctg ctcgagcccg aaccaaccgg cgggcgagac tcggaacccg
      541 gtcatcacct cgtccaggat cagcagtgca ccgtgggcgt ggcacagctc gcgcagcgcg
      601 gcgttgaaac cgggctcggg cgcaaccgcg cccatgttcc cggcagctgc ctcggcgatg
      661 accgcggcga tctcgggtcc ccgtgccacg aatagcgcgc gggcagtgtc gaggtcgttg
      721 taaggcagca cgaccgtgtc cgcggcctgc gctccagtga caccggggct ggatggcagg
      781 ccgaaggtgg cgacgccaga acccgctgcg acaagcaggg catcaacatg cccgtggtag
      841 tgccccgcga acttcaccac cacggggcgc ccggtgatgc cgcgggccag ccggatcgcg
      901 ctcattgtcg cctcagtacc ggagttgacc aggcggacct gctccaccgg ctgcacccgg
      961 cgcacgatct cctcagcgag ctcggtctcc ccggcggtgg gagtgccgaa agacagcccc
     1021 tgcgtcgcgg aggcccggac cgcgtccacc accgcggggt gcgcgtgacc caggatcatc
     1081 ggtccccagg atgagaccag atcgacgtac cggttgccat cggcgtccca gagatagggc
     1141 cccgccgcgc ggaccatgaa tcgcggcgtg ccgccaaccg cgcggaacgc ccgcaccggg
     1201 gagttgaccc cgccagggat caccgcgttg gcccgctgga acaaccgggc agactcggtg
     1261 gtgttcacgg gctcaggggg tggtttggct gacataaact ctgacgtgcc tccccgcgtc
     1321 gagcaacagg agtcccgcca gggtggccac acccgtggcg atcgcccacc agcggccgtc
     1381 gatgcgattc atggcgacgc cgcggcgcac cgtcacgatc acaccgcggt gccagcacca
     1441 ccacgccagt ccggcgagca tcagcgcggc caggacctcg accacggccg ccgccacccg
     1501 cagcgggcgt cgtgtcggcg tggtgaactc cacacctgca ccctgccatg gcgtctccgg
     1561 cacgtgacca gtggggactg tcggtgatcg ctgaaaccct gctaaccatg atccgcgaaa
     1621 ccgagatcga acggctactc gagcgccagc atggcgcggt aagcccagca cggctgcgga
     1681 aagccgaggt gagcatgaac accgtcaacg cctggatccg tccgggccgg ctcggcagct
     1741 gatgtcactg gcacccggcg cggcatccgc acccggacgt ttgcggccac cagtgccgct
     1801 tcacaccgtc agggcgcggt gcggcggcgc gggcggaacc actcgttcgc gggccgctgg
     1861 aacatcatca cgatcgccgc gataagcagg agaagctgga acagcgcttg catgggcgtg
     1921 actacgggac cgatcaagaa cagcacactc aggcagccga gtgcggcgag cacgatccgc
     1981 gcccaattcc gtcctccccg catgagatga gcagaaccga aacccacagc cacaatgagc
     2041 aacccgatca ctgccacgcc aaccacgaca acagtcgcga tgctttcgat cgtcgcccga
     2101 tccatggccg gatactgggc gatcactgca tcgatcgcct cagcccggtt ccggtcgcgc
     2161 tggatgaacc cgatcacggc attgattgcg ccgatcgtca ggtaggtgac ccagatccag
     2221 aacgaaactt cgacgctgct cggccgagga ccccgagacg gggttccggt cgcctggtaa
     2281 ccgtcgagcg gcgctggccg ctgctcctcg cgcggatccg acggcggctg gatcgtggtc
     2341 atgcttccca cggtagtcat gcacgatctg cgccgcccga agactcgcgg gggttcagtg
     2401 cagccaaccc gcggcctgca ccgcccagta cgtcagcacc agatcagcac ccgcccggcg
     2461 gatcgaggtc agcgtttcca gcacggcgcg ccgccggtcc agccacccgc gggccaccgc
     2521 cgcctccacc atcgagtact cgccagagac ctggtaggcg gcgaccggca catcggaaat
     2581 ctcggccacc gcgtgcagca cgtccaggta agccatcgcg ggcttgacca tcacgatgtc
     2641 ggcgccctcg gcaagatcca gcgctgtctc gcgcagtgcc tcccgggaat tggccggatc
     2701 ctgctgatag gtcaaccgat ctccgcacag ggtcgactcc accgcgtcgc ggaacggacc
     2761 gtagaacacc gaagcgtact tcgcgctgta ggccaggatc ccggcgttgt gctcgcctgc
     2821 agcgtccagc gcatcgcgga tcaccccgac ctggccgtcc atcatgccgc tgagtccgac
     2881 caggtgagca ccagcctgca cctgtgcgac agccatctgc gcgtacacag cgagggtggc
     2941 gtcgttgtcc acttggccgg ccgcattcag tagcccgcag tgtccgtgat cggtgaactc
     3001 gtccaggcat gtgtcagcca tgatgacaat gtcgtcaccg acctcggcgt gcacatcgcg
     3061 caaggcggcg ttgagcacgc catccgggtc gatcccgccg gagccggtgg cgtctctggt
     3121 agtgggcacg ccgaacagca tgatcccgcc cagcccagcc gccaccgcct cggccgcggc
     3181 cttgcgcagc gagtccctgg tgtgctgcac cacaccgggc atcgaggaaa tcggtaccgg
     3241 ctccctggct ccctgcttga cgaaaacggg cagcaccagc tgatgcgcag ccatggtggt
     3301 ctcccccacc aaccgccgca tcgccgcggt cgtccgcaac cgtctcggtc gactggtcgg
     3361 atacatggag ccctccggac ccgtgagtgg cgatacgagc tatagctcgt atcgccactc
     3421 acggctcgtc atcgacggcg ggtcttggct ttgcggggtg ggggcagggc gcctgccgca
     3481 cggagctgcg cggcgtgatc ggccagggca tcgacgaggg ggccgatctg agctacctcg
     3541 ggttggacgt cgacgcggag accgaactcg acggcggtct cggcggtggc tggaccgatg
     3601 caggcaacaa tcgttcgagc atgc
//
LOCUS       DASVXZ010000945         1556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1320232, whole genome shotgun sequence.
ACCESSION   DASVXZ010000945 DASVXZ010000000
VERSION     DASVXZ010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1320232"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="VF788_19855"
     CDS             complement(<1..431)
                     /locus_tag="VF788_19855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936385.1"
                     /translation="MASSPKFNFQQNIAPVQDVKTDTSGGDGGESHSLAYGYNTSSAD
                     GGVAVGGNGGAGNGLGMGGRGGDSDAETHGGHGFFPFSNGDADSDAGNGGAGVGVGTG
                     GHGGGAEANGGDSSTYGFTNSSSSADGGHGGPANVYASQNTP"
     gene            678..1226
                     /locus_tag="VF788_19860"
     CDS             678..1226
                     /locus_tag="VF788_19860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936386.1"
                     /translation="MQVDPGDQPAAPPPRPNVAIKALTSEIPVRPRVIDVSFWLWLGA
                     CLIGLITALVTLRYFAELRAMILVIVEQQFPKETPATRDKAAVATVATLIGAGALIVL
                     VQLALAVAMRAGRSWARFALVGLGLLGTLYSVAVFGSAPLISRIGLLASIALMVSAMV
                     PMFLVGARMWFAHQRSVWSDGD"
     gene            complement(1223..>1556)
                     /locus_tag="VF788_19865"
     CDS             complement(1223..>1556)
                     /locus_tag="VF788_19865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936387.1"
                     /translation="HDREYLGHLNLAQFVGLVPGLDQAFLDRFNSASAPAKDWAVLDG
                     LCGRIFRSLPGHSRTDITLLAQVYTGDKTWGWADKGAYHAACFARTGQQATRSVVGIG
                     DRPLAGPS"
BASE COUNT          240 a          497 c          524 g          295 t
ORIGIN      
        1 ggggtgttct ggctggcgta cacgttggcg ggcccaccgt ggccaccgtc ggcgctggag
       61 ctggagttgg tgaagccgta ggtcgaggag tcgccaccat tggcctctgc gccgccaccg
      121 tgaccgccgg tgcccactcc gacgccagca ccaccgttgc cggcgtcgga gtcggcatcg
      181 ccattgctga aggggaagaa tccgtggcca ccatgggtct cagcgtccga gtcgccgcca
      241 cggccaccca tgccgagacc gttgccggca ccaccgttgc cgcccaccgc gacaccaccg
      301 tcggcactcg acgtgttgta gccgtaggca agcgagtggc tctcgccgcc gtcgccaccc
      361 gaggtgtcgg tcttgacgtc ctgcacgggg gcgatgttct gctggaagtt gaacttcggg
      421 ctcgaagcca tgattgctct ccttagaatg gtgtggtgga tcttcgtccg gtggtgctcc
      481 ggacgtccgg tccggctggt gataaaacta agactccgac cccgccccgc catcggggtt
      541 gcggcctggt gtgcaccccc cggataccgg gactggctaa tgctccgcag gacccgatta
      601 ggggattgac ccccagccgg cgggttagtg tggcccagtc cggtggcaca tctggctccg
      661 gggtaggtta ctgtctgatg caggtagacc caggcgatca acccgccgca ccgccgcccc
      721 gcccgaacgt cgcgatcaag gcgttgacct cggagattcc tgtacgaccg cgggtgatcg
      781 atgtctcgtt ctggctgtgg ctcggggctt gtctgatcgg cctgatcacg gccctggtca
      841 cgctgcgcta cttcgccgag ctgcgagcga tgatcttggt gattgtcgag cagcagttcc
      901 caaaggagac gccagcgacg cgcgacaagg cggcggtcgc caccgtcgcg accttgatcg
      961 gtgccggtgc gctgatcgtt cttgtccagc tggcgttggc ggtcgcgatg cgcgcaggtc
     1021 gtagctgggc gcggttcgcg cttgtcgggc tgggcctgct cggcacgctc tacagcgtcg
     1081 cggtgttcgg cagcgcaccg ctgatttccc ggatcgggct actggccagc atcgcgctca
     1141 tggtcagcgc catggtgccg atgttccttg ttggtgctcg aatgtggttc gcgcaccaac
     1201 gctccgtctg gtcagatggg gattagctgg gccctgcgag aggccgatca ccgatcccga
     1261 caacggagcg ggtggcttgc tggccggtcc gggcgaagca ggctgcgtgg tatgcaccct
     1321 tgtctgccca accccacgtc ttgtcaccgg tatagacctg agccagcagc gtgatatccg
     1381 tccggctgtg accgggtagg gaacgaaaga ttcgcccgca caagccgtcg agcaccgccc
     1441 agtccttggc aggcgcggaa gcagaattga agcgatccag gaacgcctgg tcgagtccgg
     1501 gaaccagacc gacgaactgg gcaaggttga gatgccccag gtactcgcga tcgtgc
//
LOCUS       DASVXZ010000946         2359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_985589, whole genome shotgun sequence.
ACCESSION   DASVXZ010000946 DASVXZ010000000
VERSION     DASVXZ010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_985589"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..698
                     /locus_tag="VF788_19870"
     CDS             <1..698
                     /locus_tag="VF788_19870"
                     /inference="COORDINATES: protein motif:HMM:NF020080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936388.1"
                     /translation="LGMVEGGRHMLTLGGILGDHPPTDPVGFEAFAASLPFTDISEAI
                     VGAQSLDSPVAFRFPAAVRRRYECLQQFPDGLLVLGDAVCSFNPVYGQGMTVAANQAL
                     VLRQLLAHHTDLAPARYFRAIAKTINSPWELAVSADLALPGVSGSRTRRIRIANAYLP
                     RLLAAASSDVALATAFIRVLGLLDRAEGLLRPDRVLRMWWITRGTANAAIGSNGINHN
                     RDTAIQPEVSPWH"
     gene            689..1144
                     /locus_tag="VF788_19875"
     CDS             689..1144
                     /locus_tag="VF788_19875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936389.1"
                     /translation="MALSLNFTAPLKQDPESQQRLQQLVTVFTDQVQPTIDTALAKSE
                     LVHFARILVIDNKYIQVLTEFDGDPMGYTEFFRTELPAVFEHIFSLVEGAPPWKEIDN
                     PNDFYEYTHSLNLRALGTSPDVGYDHGYMFSAFGDATVREIKGKLSPGN"
     gene            1154..>2359
                     /locus_tag="VF788_19880"
     CDS             1154..>2359
                     /locus_tag="VF788_19880"
                     /inference="COORDINATES: protein motif:HMM:NF044706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936390.1"
                     /translation="MKVDLGNVQALIAKTYRRPTSRHLLFDFGARASGRAFLRELARR
                     VTMADAELDPAPDPLLNIGITYNGLGALGVDPALLAKFDAVFKLGPRAVNMALGDVAG
                     SRSDPASWWEGRFATEDVHCVVHLYAQSDDAAQDATESVRDLARINELTELIPRQNGT
                     ILEGRWYSRAKLHFGYTDGISQPDIRWDDDADLAAGQVDFRHFLLGYSTDECPSAPAS
                     GPAADFARDSTYGVFRWLYQDVATFNLFLSTEGPRLFPELSPADAEELLAAKMMGRWR
                     DGTPLVLSPERPDPDLAASNDFGYATQDPDGLRCPFSAHIRIVNPRDTPLDPIVVDGV
                     PRTLRRGMPYGSPLEGTTDDGKDRGLVGMFLGADLRKQVYTLTSWIGRNDFSPVYDAN
                     RRAQDPLVGN"
BASE COUNT          435 a          724 c          714 g          486 t
ORIGIN      
        1 tgctgggcat ggtcgagggc ggccggcaca tgctcaccct gggaggcatc ctcggtgatc
       61 acccaccgac cgatccagtc ggcttcgagg cattcgcggc cagcctgccc ttcaccgata
      121 tctccgaggc aatcgtcggg gcccagtctt tggacagccc ggtcgcgttc cggttcccgg
      181 ccgctgtgcg gcgccgctac gaatgtctgc agcagtttcc ggatggtctg ttggtgctcg
      241 gtgacgcggt gtgctcattc aaccccgtct acgggcaagg gatgactgtg gccgccaatc
      301 aggcgctcgt gttacgccag cttcttgcac accacacgga tcttgcaccg gcccggtact
      361 tccgggcgat cgcgaagaca atcaattcgc catgggagct agccgtgagc gccgacctgg
      421 ctttgcctgg tgtatccgga tcccgcaccc gcaggatccg gatagccaac gcctatctcc
      481 ctcggctgct cgcggcggcc agctccgacg tggccctggc cactgcgttc atccgagtcc
      541 tggggttgct cgatcgggcc gagggactgc tacgaccgga ccgtgtactg cggatgtggt
      601 ggattacccg gggcacagcc aacgctgcca ttggaagtaa tggtatcaac cataatcgag
      661 acactgctat ccagccggag gtatcgccat ggcattgagt ctgaatttca cggcgccgct
      721 caagcaggac ccggaatccc agcaacgctt acagcaatta gtaactgtat tcaccgacca
      781 ggttcagccg acgatcgata ccgcgctggc caagtcggag ctggttcatt tcgcgcgtat
      841 ccttgtcatt gacaacaagt acattcaggt cctgacggaa ttcgatggtg acccgatggg
      901 ctacacggag ttcttccgta ccgagctccc agcggtcttt gagcatatct tctccttggt
      961 ggaaggtgcg ccaccgtgga aggagatcga caaccccaac gatttctacg agtacaccca
     1021 ttcgctcaat ctcagggctc tgggcacctc gccggatgtc ggctacgatc atggctacat
     1081 gttctcggcg ttcggtgatg cgacggtacg agagatcaaa ggaaaattaa gcccgggcaa
     1141 ctgaggggcg acgatgaagg tcgacttggg caacgtgcaa gctttgatcg ccaaaaccta
     1201 ccggcgtcca acttctcgcc acctgctatt cgacttcggt gcacgtgcaa gtgggcgcgc
     1261 atttctccga gagttggcgc ggcgggtcac catggccgac gcagagcttg atcctgcccc
     1321 agatccattg cttaacattg gtatcacgta caacggtctg ggtgccctgg gggtggatcc
     1381 agcactgttg gcaaagttcg acgcggtctt caagctcggg ccacgcgccg tcaatatggc
     1441 tctgggagat gtcgctggta gtcgaagcga cccggccagc tggtgggagg gtcgtttcgc
     1501 gactgaggat gtgcactgcg tcgtacatct gtacgcccaa tcggatgacg cagctcagga
     1561 cgcgaccgag tcggtgcggg atctggcgcg catcaacgag ctcaccgagc tgatcccgcg
     1621 tcagaacggc acgatcttag agggacgttg gtatagcaga gcaaagctgc atttcggtta
     1681 caccgacggg atttcgcagc ctgatatccg ctgggacgat gatgctgatc tcgcagcggg
     1741 gcaggttgat tttcgtcatt tcctgttggg ctactcaacc gacgagtgtc cctctgctcc
     1801 cgcatccggc cccgctgctg acttcgcccg tgacagcacc tatggggtgt tccggtggct
     1861 ctatcaagat gtcgcgacat tcaacctgtt cctgagtacc gagggcccgc ggctgtttcc
     1921 ggagctttcc cctgctgacg cggaagaact gctcgcagcg aagatgatgg gtcgctggcg
     1981 tgatggcacg ccgctcgtcc tctcccctga gcgtccggat ccggacctgg cagccagcaa
     2041 cgacttcggt tacgcgactc aagatccgga cggcctgcgg tgcccgtttt ccgcccacat
     2101 ccggattgtg aacccacggg atacgccgct cgatccgatc gtggtcgacg gggtgccccg
     2161 tacccttcgg cggggaatgc cctacggctc cccgctggag gggaccacgg acgacgggaa
     2221 agaccgcggt ctcgtgggca tgttcttagg cgcggatcta cgcaagcagg tttacacatt
     2281 gaccagctgg atcgggcgga acgacttcag ccccgtgtac gacgccaatc gccgcgctca
     2341 ggaccccttg gtcggcaac
//
LOCUS       DASVXZ010000947         3157 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1157844, whole genome shotgun sequence.
ACCESSION   DASVXZ010000947 DASVXZ010000000
VERSION     DASVXZ010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3157
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1157844"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            389..724
                     /locus_tag="VF788_19885"
     CDS             389..724
                     /locus_tag="VF788_19885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013678687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6247 family protein"
                     /protein_id="HEX8936391.1"
                     /translation="MTAAGQPHPIPTIPPLPEGASPRAIRAALITEEREEFDQAYRRA
                     LADAAETLELTGVLDTLEHWRRRAIMSADPQAYRRMLRRAAHLLSGEDVPEDEPLAQL
                     KERLARLGV"
     gene            725..916
                     /locus_tag="VF788_19890"
     CDS             725..916
                     /locus_tag="VF788_19890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936392.1"
                     /translation="MYRVIDDDQVQAQVTALPAEALPAYAEAQTLLEVAPWSGSPYRK
                     EKPDGPMRTLPFGSSGGVV"
     gene            1034..1294
                     /locus_tag="VF788_19895"
                     /pseudo
     CDS             1034..1294
                     /locus_tag="VF788_19895"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(1385..1461)
                     /locus_tag="VF788_19900"
     tRNA            complement(1385..1461)
                     /locus_tag="VF788_19900"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1425..1427),aa:Pro,seq:ggg)
     gene            complement(1508..2104)
                     /locus_tag="VF788_19905"
     CDS             complement(1508..2104)
                     /locus_tag="VF788_19905"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HEX8936393.1"
                     /translation="MPIIIEVFSDFVCPFCYLAEQPLADAVEGTDTQIAWQPFELRPE
                     PTPTLRPEGDYLQSTWQDVVYPMAERMGVPIVLPRVSPQPYSRLAFEGFAYAAERGLG
                     QRYTQQIFRAFFVQQRDIGQPEVLSDVAAELGLDADDFRAALDSGRYGQAHQQALRRA
                     HELQITVVPTFIIEGRRLEGMPSAEALHRLLNGAVALR"
     gene            complement(2191..>3157)
                     /gene="der"
                     /locus_tag="VF788_19910"
     CDS             complement(2191..>3157)
                     /gene="der"
                     /locus_tag="VF788_19910"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEX8936394.1"
                     /translation="TKVDDERAVADTAALWSLGLGEPYPVSGLHGRGTGDLLDAVLAV
                     LPTAPRDLAGRTGGPRRVALVGKPNVGKSSLLNRLAGEQRSVVHEVAGTTVDPVDSLL
                     ELDGETWRFVDTAGLRKRVRTASGAEYFASLRTRAAIEAAEVVVVLLDASEPITEQDQ
                     RVITSVIESGRALVVAFNKWDLVDDDRRRELARELDRDLARVGWAERLNISALTGRSV
                     GKLAPFLRTALESWDRRIPTGQLNAWLSEVVAATPPPVRGGRAPRVLFATQASARPPT
                     FVLFTTGFLEAGYRRFLERRLRETFGFTGSPVRICVRVRERQARR"
BASE COUNT          560 a         1113 c         1007 g          477 t
ORIGIN      
        1 tgtgtcgaac ggggagcctc tcaccagcga aatcacccta actgagtcgt ggaccgtcga
       61 gggagtttga cgacattggc tccccggatt ggctccctgg gcggaagagg ggacccccat
      121 ggcaatcgcc ctccaggcgc acccggcgcc acggccacca atcacgatct acgacgccca
      181 tcctgagctc agcgcagcgt ctcgaagtgt tgaggggtgt caggccgctc ccggcccagg
      241 acccattccc aggtgctgac attctgtacg tccacgatcg cgcgagctat caggctgtga
      301 tcaccaggat gcgggagacc ttgggggaac tgggccgcga cggcgcggaa caccaggcgc
      361 tgtaacgccg gccgctatcg tggtcgccat gaccgccgcc ggccagcccc acccgatccc
      421 gaccattccc ccactgccgg agggggccag cccgcgcgcg atccgtgccg cgctcatcac
      481 ggaggagcga gaggaatttg accaggcata ccggcgagcg ctggccgacg cggccgaaac
      541 gctggagctg acaggcgtat tggacacgct ggagcactgg cggcgccgcg cgatcatgtc
      601 cgccgacccg caggcgtacc gacggatgct gcgccgcgcg gcgcatctcc tgtccggtga
      661 agacgtgccc gaggatgagc cgctagcgca gctcaaggaa cggcttgccc gcttgggcgt
      721 gtaggtgtac cgcgttatcg acgacgacca ggtgcaagcg caggtcaccg cgctgcccgc
      781 cgaggccctg cccgcctacg ccgaggcgca gacgctgctg gaggttgccc cctggtctgg
      841 tagcccgtac cgcaaggaga agccggacgg gccgatgcgg acactcccct tcggcagctc
      901 gggaggcgtg gtgtaactca tcttggagca gcaacgggag gtccacctgc tgctcgtgca
      961 gtggatcggc tgacctaatc gccactcgtc gtgttcgggt tgcccgggga cccgctggta
     1021 ggtccgccgt gagttccaga agatcaccca ggcggccggg ttcggggcgg actggacccc
     1081 ccgggagctg cgccatagct tcgtgtcgat cctcagtaac aacggcggcg tccggatcga
     1141 agacatcagc gacctgatgg gccacagcgg cacctcggtc accgaaacgg tctaccgcca
     1201 cgagatccgc ccagcactca ccaaagccgc gaccgccatg aacaagatcc tcaaaaccaa
     1261 gcagacgagt ccgcggcaag ccacctccgc gtaatctgaa cgccgattgg ctccccgttt
     1321 gactcccgaa gatccagaag gggccccgga taatctccga aaccccctct gatctgctat
     1381 gacctggtcg ggacgacagg attcgaacct gcgacccctt gacccccagt caagtgcgct
     1441 accaagctgc gccacgtccc ggccacgccc tcgcaggcgc ttgcacagcc tagcgcagtc
     1501 gcgagagtta ccggagggcc accgcaccgt tgagcagccg atgcagggcc tccgcggagg
     1561 gcataccctc caatcggcgg ccctcgatga tgaacgtggg cacgacggtg atttgcaact
     1621 cgtgagctcg gcgcagcgcc tgctgatgcg cctggccgta gcgcccacta tccagtgccg
     1681 cgcgaaagtc atcggcatcc aagccgagct cggcggcgac gtcgctcagg acctccggct
     1741 gtccgatgtc gcgctgctgg acgaaaaacg cccggaagat ctgctgggtg tagcgctgcc
     1801 cgaggccgcg ctccgcggca tacgcgaagc cctcgaatgc gaggcggcta tagggctgtg
     1861 gcgatactcg aggcagcacg atcggaacgc ccatgcgctc ggccatcggg tacaccacgt
     1921 cctgccacgt cgactgcagg tagtcgccct caggccgcag ggtcggtgtg ggttccggtc
     1981 gaagctcgaa gggttgccag gcgatctgcg tgtcagtgcc ctcgacggcg tctgcgagcg
     2041 gttgctcagc gagatagcag aatgggcaga cgaaatcgga gaacacctcg atgatgatgg
     2101 gcacaccgca cctttcagcc gaatctggtt gtattcccca gcctgcctcg tgtgccctgc
     2161 caccggtccc cctcgtgacc gatgtctccg tcatcggcgc gcttggcgct cccggacacg
     2221 aacgcagatg cgtaccgggc tgccggtgaa gccgaatgtc tcacggagcc gccgctccag
     2281 gaatcggcgg tacccggcct cgagaaaccc ggtggtgaac agtacgaagg tgggtggccg
     2341 ggcgctggcc tgcgtggcga agagcaccct aggtgcgcga cctccgcgga ccggtggcgg
     2401 tgtcgccgcg accacctcgg acaaccacgc gttgagctgg ccggtgggta tgcggcggtc
     2461 ccaggattcc agggccgtgc gcagaaatgg tgccagcttg ccgaccgatc gtccggtgag
     2521 cgcggagatg ttcagccgct ccgcccagcc cacccgcgcc aggtcgcggt ccagctcccg
     2581 agccagctca cgacgccggt cgtcgtcgac cagatcccac ttgttgaacg ccaccaccag
     2641 cgcgcggccg gactcgatca ccgacgtgat cacccgctga tcctgctcgg tgatcggctc
     2701 gctggcatcg agaagcacga ctaccacctc ggcagcctcg atcgccgccc gagtgcgtag
     2761 cgacgcgaaa tactccgcgc cactcgcggt ccgcacccgc ttgcgcagcc cggcggtgtc
     2821 cacgaaccgc cacgtctcgc cgtcgagctc caacaacgag tccaccgggt ccaccgtggt
     2881 gccggcgacc tcgtgaacca ccgaccgctg ctccccagcc aaccgattga gcaggctgga
     2941 tttgcccaca ttgggcttgc cgacgagcgc aacccggcgc ggtcccccgg tccgaccggc
     3001 cagatcgcgc ggtgcggtcg gcagcactgc cagcaccgcg tcgagcagat cgccggtgcc
     3061 gcgaccatgc aacccgctca ccgggtacgg ctcacccaac cccaacgacc acagtgccgc
     3121 ggtatcggcg accgcacgct cgtcgtcgac cttggtc
//
LOCUS       DASVXZ010000948         2322 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1409918, whole genome shotgun sequence.
ACCESSION   DASVXZ010000948 DASVXZ010000000
VERSION     DASVXZ010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409918"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(780..932)
                     /locus_tag="VF788_19915"
     CDS             complement(780..932)
                     /locus_tag="VF788_19915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936395.1"
                     /translation="MDQCGDAVTKVFEVGVEVGGGLLPQEFAHGHENGAIPVIAILDV
                     VEQADA"
     gene            2061..>2322
                     /locus_tag="VF788_19920"
     CDS             2061..>2322
                     /locus_tag="VF788_19920"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020645608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX8936396.1"
                     /translation="MTLGDLAPADTSGAPQPPALLVVDIVIPVYNEEKGLELCVRLLH
                     AHLSSEMPYPFQITVADNASTDTTLDVANRLAAELPAVRVVHM"
BASE COUNT          508 a          783 c          627 g          404 t
ORIGIN      
        1 cgacggcgac gccgatgatc tacaccaaga tcaattgctt cgaccggttg agatcaagcc
       61 cccgcaccca gccgtatccc ggcgatatcc ctcgctactg gtgatccttg tggcggtcac
      121 gggccgcagg ctcagcgcca caatgcccca cacggactgg tcacagccgc cgcctacctc
      181 cgcgccttgc catgatccgg taaccacccg aaatacgaca acaatcggat atccacgagt
      241 gcggatcgtc cggccacgga aatgatctgc aacctctaca gtggagaagt cccggcttcg
      301 attgccaagg ggtgacacgc tgacgaacgg gcggtcaact acggacacgc gccggaaaaa
      361 ttaagcgctg gaaaggttta aagagataat ttacttcccg cggggccgta tcaacgcaaa
      421 gaacgtatta actatgaacg tctgctattg gaactcggcg tcggcaggtt gaaaaatggc
      481 gtggcgagag agattctaag ccaaaagcaa ccagccccgg aacgaaggag cgtcccgcta
      541 gcccgaagaa caagtcaagc aacgatccag cctcatcgcc gaccggacgt cgcaagccta
      601 cgccacggat cttgatcgaa ggaaaggaac ggacaacaat gcgtaaaata atcgcctcag
      661 cagtgggcgc ggccgccctg gccgctatcc cactatccct gaccacagcc gcagcttccg
      721 cgggttccgg aactagtcag gtatgcaccc aaaacagcga cctcgggctc acccacggtt
      781 catgcgtcag cctgctcaac aacatccaga atggcaatga ccggaatggc gccattttcg
      841 tgaccgtgtg caaattcctg cggcaacagt cccccaccga cttcgacacc aacttcaaaa
      901 accttggtga ctgcgtctcc acactgatcc acacctccac gccgtcaccc acggtatcgc
      961 ccaccccgac agcatctcca acgccgaccc ccatggcgtc gccctcgcca accccttccc
     1021 ccacaccctc gccgtcacca acacccctgg tctgacgaca acggttggaa tgctccaccg
     1081 atctacgacc tcgctcgcgg tcagcggtgg cgataccagc caactagcga atccacatga
     1141 accgacaccc tcgtggtcct gatcagccgc ggacagaatc gacatcaaga ccacgagggc
     1201 ttcatgggtt cagaagctgc tcacggctca gcggccgcac attccctggc gggctggctc
     1261 cgcggtgatc tctgtcgccc accgtggttc gggtagcgtc actgtgattg accttgcgag
     1321 tgacatcggg tcgccaccat tgccgtgggc gccaccccga ggtgtctgcg gtgaccccag
     1381 acgaccgccg ctctctgcgt ccgacttctg gtccagcagc gtggcggtaa tcgacaccgt
     1441 aaacgacacc ttcgctgaca ccatcctcgt aagcaacgat ccgcgggatt gcggtgaccg
     1501 caatcgcccc atccgctggg attgccgtgc gccgacgcat ccatggtgcc ggtgtcggac
     1561 cagatgcgac ggtggctgga gcaggtgagc tgttgctgag cgctgagcag cagcgccgat
     1621 caagatgggg tctcttcccg cgcggtggac agcggcagcc cgtgacgtcg ctagagccgc
     1681 atccgcccag ccgccaggca cagggccagc gggacaacgg caagattgcc ggctcggccg
     1741 gcagtgacac cacatggcga cgtaatgagg cgcaattact cgagactcct gtgcggctgg
     1801 cagtggcctg tcgaccgcac cccgcgcaga agtacctttc aagagcggca tgaacggcca
     1861 tcgaacagtg atcaatggta gctgggcgca ctcatgaaac gccgcttagg tacgatcaac
     1921 actaaatgaa tcccgatacc gttaagatcg cgacccgtcc cggcgagcgt gtttcacctg
     1981 cgatttttcc gcgttggtga cgaacaacgc acgctgtgcg accaatagcg gtattgacat
     2041 tcccttttat ggtttccagc gtgaccctcg gggacctcgc acctgctgac acctccggtg
     2101 ctccgcagcc tcctgcgctc ctcgttgtcg acatcgtcat tccggtgtac aacgaggaaa
     2161 aaggccttga actgtgtgtg cgactgctgc acgcgcacct cagctccgag atgccctacc
     2221 cattccagat caccgttgcc gacaacgcca gcaccgacac caccctcgac gtcgccaacc
     2281 ggctggccgc ggagttgccg gcggtacgag tcgtgcacat gc
//
LOCUS       DASVXZ010000949         5169 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1321214, whole genome shotgun sequence.
ACCESSION   DASVXZ010000949 DASVXZ010000000
VERSION     DASVXZ010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5169
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321214"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..746
                     /locus_tag="VF788_19925"
     CDS             <1..746
                     /locus_tag="VF788_19925"
                     /inference="COORDINATES: protein motif:HMM:NF013559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M12 family metallopeptidase"
                     /protein_id="HEX8936397.1"
                     /translation="GPVASLAGDFRIAEPQHIAVLTSKYWGATPRQLTVSFMDNPPAD
                     LRARIISHMNAWTRTGCISFVQTNGVGQVRIARSADGYWSYLGTDILHIPKSRQTMNL
                     QGFTMNTPESEYHRVIRHETGHTLGFPHEHMRRALVARIDPDKAYEYFLRTQGWDKQT
                     VDEQVLTPLDERSLMSTPADQTSIMCYQLPGSITRDGQPIVGGLDIDQTDYAFAGRIY
                     PKAGETPADRMTGELEDQWDESEDVEVGV"
     gene            799..1128
                     /locus_tag="VF788_19930"
     CDS             799..1128
                     /locus_tag="VF788_19930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936398.1"
                     /translation="MGRLIEFRADAGTLPPSLAVEVGDVLMFGATGGHVRSGADAVEM
                     MGAFQTGVLTDDGRILTPMGAPGTVLFRARCPGRATIDVITGDPWQAAQSTLLELAVE
                     PSSRACY"
     gene            complement(1125..3032)
                     /locus_tag="VF788_19935"
     CDS             complement(1125..3032)
                     /locus_tag="VF788_19935"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX8936399.1"
                     /translation="MDPASSYGGNGFARRRQVRLAAEFPGLDWLAAQTCTSPALSPDG
                     SALAVVSDRDGTPRVWLGPLPQAGLLGDAMAQPGEPVRLDTGEDYVRVVTWSPDGEWL
                     CLTTAPGGGERTVVRALHPDGSGARVVAGSASGMARTGRWQPGGHIIGLAENNATDPA
                     TLDTYAVDVCSGHRRYLASGLAATVCTFSHDGRYAVVRVGSRGRRRLVLVDTRTGNRT
                     ELLGADATIADARFSPDDRMIYLHTDASREFAALLSLPRIAAGYPEAAELIAAREHAE
                     LEKFALEPTGRAVVAVWNVEGRSELEFVDLTCGQRRALPPPPAEVVTGCTFAQDGGSM
                     ILAVESSTEPPHVLRYPLPPTEPVRLAPTLPPPWTPDEPIRPELHRWKARDDLTLSGW
                     LYRPGGALGAVPTLVWLHGGPEAQERPTFNPIYQALLKYGIAVFAPNVRGSSGFGRGV
                     LDADMHRRRFAAIDDVADLVRYLVETGLADPSALGCAGRSYGGYLTVAALVRYPSLFR
                     VGVDVCGITDFETFYANTEPWIAAAAVSKYGDPQRDAELLRELSPIHHIGQLRVPLLV
                     VHGGHDTNVPTIEAEQLVAALRDRGASPGYLVLPDEGHEILRVTNRTIFLQEVVRWLI
                     THLLEIDERSA"
     gene            complement(3033..4823)
                     /locus_tag="VF788_19940"
     CDS             complement(3033..4823)
                     /locus_tag="VF788_19940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglutaminylglutamine amidotransferase"
                     /protein_id="HEX8936400.1"
                     /translation="MCGITGEIRFDGTSADIDAVTTMTTALHRRGPDGWGIHAGDTTA
                     LGHRRLKIIDLSNRAAQPMVDPELGLSAVFNGCIYNYRELRSELRTAGYQFFSDSDSE
                     VLLKAYHRWGTSCVDHFLGMFAFAVLERDSGRLILGRDRLGIKPLYLSQTPHRLRFAS
                     TVPALLTAGEVDTTIDPVGLHHYLSFHSVVPAPRTILSGVQKLPPATVRTVHPDGRYE
                     DRKYWQPIFSRGDPALTAAEWPGAVLGALRRAVERRMVADVPVGILLSGGIDSSLVVA
                     LLAEGGQHGLRTFSVGFEAAGGESGDEFVYSDQVATHFGTDHQKIMVTSDRLLPAVDA
                     AIEAMSEPMVSHDCVAFYLLSQEVSRSVTVVQSGQGADEVFAGYDWYPPLAGIPRQGA
                     AEAYAQVFIDRPHAELAELLEPEWLAGGDSGTADHSRAFVDAHFNAPGADTAVDAALR
                     LDTTVMLVDDPVKRVDNMTMAWGVEARVPFLDHELVELAGACPPELKLAAGGKGVLKD
                     ASRGVVPDMIIDRPKGYFPVPAIRHLSGSFLDRVREAVTDPVAKDRGLFRPDWLERML
                     VDPNTERTTLGSNALWQVALLEMWLQRRGI"
     gene            complement(4837..>5169)
                     /locus_tag="VF788_19945"
     CDS             complement(4837..>5169)
                     /locus_tag="VF788_19945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018335370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX8936401.1"
                     /translation="DELVLKPVNGYGGHGVVIGPEADRFQLAELAATVQANPEDWVAQ
                     DVVSLSTHPTFTGTRLEPRAIDLRAFVLLGERAEVAPAALTRVASSGSMIVNSSRGGG
                     AKDTWILR"
BASE COUNT          882 a         1694 c         1753 g          840 t
ORIGIN      
        1 tcgggccagt tgccagtctc gccggagatt ttcgtatcgc tgagccgcag catatcgccg
       61 tgctgacctc gaaatattgg ggcgctacgc cgcgacagct gacggtaagc ttcatggaca
      121 acccacccgc tgacctccgc gctcgcatta tttcccatat gaatgcgtgg accagaacag
      181 ggtgcatttc gttcgtccaa accaacgggg ttggtcaggt ccggatagcc cggagtgccg
      241 atgggtactg gtcgtacctc gggaccgata ttttgcacat cccgaagagc cggcagacga
      301 tgaacctgca gggtttcacg atgaacacgc ctgaatccga gtatcaccgt gtcatccggc
      361 acgagaccgg ccatactctc ggttttccgc acgagcacat gcggcgtgcc ctggtcgccc
      421 ggatcgatcc cgacaaagct tatgagtatt ttctccggac tcagggctgg gacaagcaga
      481 ccgtcgacga gcaggtgctc actccactgg atgagcggtc gttgatgagt accccagccg
      541 accagacctc catcatgtgt tatcagcttc cgggctcgat tacgcgtgat ggtcaaccta
      601 tcgtgggcgg actcgatatc gaccagacgg attacgcgtt cgccggtaga atttacccca
      661 aagcggggga gactcccgcc gatcgcatga cgggtgaact cgaggaccaa tgggacgagt
      721 cggaggacgt ggaggttggg gtttgacctg cgccgggctc atcggagccg ggtcaggacg
      781 caagggtgac gggttcccgt gggtcggctg atcgaatttc gggccgacgc ggggaccctc
      841 ccgccaagcc tcgcggttga ggtgggtgac gtgctgatgt tcggggcaac gggcggccat
      901 gtccggtccg gcgcggacgc cgttgagatg atgggagcgt tccagacggg tgtgttgacc
      961 gatgacggcc ggattctgac cccgatggga gctcctggca cggtgctgtt tcgcgcccgt
     1021 tgccccgggc gggcgacgat cgatgtgatc actggcgacc cttggcaggc tgcccagtcc
     1081 acgttgctgg agctagcggt ggagccctca tcgagggctt gctattaagc gctgcgctcg
     1141 tcgatctcga gtagatgcgt gatcagccaa cgcacgactt cctgcaggaa gatcgtgcgg
     1201 ttggtgacgc gcaggatctc gtgcccctcg tcgggcagca ccagatagcc gggtgacgcg
     1261 ccgcggtccc gtagcgctgc gaccagttgc tcggcttcga tggtcggcac gttggtgtca
     1321 tggccgccgt gcaccaccag cagcgggacc ctcaactgcc cgatgtggtg gatcggcgac
     1381 agctcacgca gcaactccgc gtctcgctgc gggtcgccgt acttgctcac cgccgccgcc
     1441 gcgatccacg gctccgtgtt ggcatagaac gtctcgaagt cggtgatgcc acagacatcg
     1501 acgccgaccc ggaacaacga gggatacctc accagcgcgg cgacggtcag gtaaccaccg
     1561 taggagcgcc cggcacagcc cagcgcggag gggtcggcaa gcccggtttc caccagatac
     1621 cggaccaggt cggcgacgtc atcgatagcg gcgaaccggc gacggtgcat atccgcgtcc
     1681 agaacaccgc gtccaaaacc tgatgagccg cggacgttgg gtgcgaagac cgcgatgcca
     1741 tacttcagta acgcctggta gatcgggttg aaggtgggcc gttcctgggc ctcggggccg
     1801 ccgtgcaacc agaccagagt gggcaccgcg cccagcgcac ctcctggccg gtaaagccag
     1861 ccgctcagcg tgagatcatc ccgggccttc caccggtgca gctccggccg gattggctcg
     1921 tcgggtgtcc atggcggagg cagcgtgggg gccagccgca ccggttcggt tggcgggagc
     1981 gggtagcgca ggacgtgcgg cggctcggtg ctggattcaa cggccaggat catcgaccca
     2041 ccgtcttggg cgaaggtgca gcccgtcacg acctccgcgg gcggcggcgg cagcgcacgg
     2101 cgctgcccgc aggtcaggtc gacgaactcc agctcgctgc gtccttcgac gttccacacc
     2161 gcgaccaccg cgcgtccggt tggttccagc gcgaactttt caagctcggc gtgctcacgt
     2221 gcggcgatga gctcggcggc ctcgggataa ccggcagcga ttctgggcag ggacagcagc
     2281 gcggcgaatt cccggctggc gtcggtatgg agatagatca tccgatcgtc gggggagaag
     2341 cgggcgtcgg cgatggtcgc atcggcgccg agtagctcgg tcctgttgcc cgtccgggtg
     2401 tcaaccagca ccaagcgacg ccgaccgcgg gagccgacgc gcaccaccgc gtaacgtcca
     2461 tcgtggctga aggtgcacac tgtcgcggcc aagccgctgg ccagatagcg ccggtggccg
     2521 gagcacacgt ccaccgcgta ggtgtccagg gtggccgggt cggtggcgtt gttctcggca
     2581 aggccgatga tgtgcccgcc aggctgccag cggccggtcc gtgccatccc gctcgcggag
     2641 ccggcgacga cccgtgcgcc ggaaccatcc gggtgcagag cacggaccac ggtgcgttcg
     2701 ccgccgccag gcgctgtcgt caggcacagc cactcgccgt cgggcgacca ggtgaccact
     2761 cgcacgtagt cctcgccggt gtccaaccgc accggctcac cgggctgtgc catcgcgtca
     2821 ccgaggagac cagcttgggg caaggggccc agccagaccc gcggtgtgcc gtcccggtcg
     2881 gagaccaccg ccagggcact gccgtccgga gacagggcgg gtgaggtgca ggtctgcgcg
     2941 gcgagccaat cgaggccggg gaactcggcg gcgagccgaa cctgccgccg tcgcgcgaag
     3001 ccgttgcctc cgtaagaact cgctgggtcc atctaaatcc ccctccgctg tagccacatc
     3061 tccaacagcg caacctgcca cagagcgttg gatcccaagg tggtccgctc ggtgttcgga
     3121 tcgacaagca tgcgctccaa ccagtccggg cggaagaggc cacggtcctt ggccaccgga
     3181 tcggtcaccg cctcgcgtac ccggtcgagg aatgatccag acagatgccg gatcgccggc
     3241 acggggaagt aacccttggg ccggtcgatg atcatgtccg gaacaacccc gcggctggcg
     3301 tccttgagca ctcctttccc gcccgctgca agcttcagct cgggcgggca ggcaccggcg
     3361 agttcgacca gctcatggtc caggaacggg acccgcgcct ccacgcccca ggccatggtc
     3421 atgttgtcga cccttttgac cgggtcgtca accagcatga cagtggtatc caggcgcagc
     3481 gccgcatcga ccgcggtgtc ggcgccggga gcattgaagt gcgcatcgac gaatgcccgg
     3541 ctgtggtccg cggtgccgga atcaccaccg gccaaccact ccggctcgag gagctcggcg
     3601 agctcggcgt gcgggcggtc gatgaacacc tgtgcatagg cctctgccgc cccctgccgc
     3661 ggtatgccgg ccagcggtgg gtaccagtca tagcccgcga atacctcgtc cgccccctgc
     3721 ccggactgca ccacggtcac agagcgggag acctcctgag agagcaggta gaacgcgacg
     3781 cagtcgtggc tgaccatcgg ttcgctcatc gcctcgatgg ccgcgtccac cgccgggagc
     3841 aaccggtccg acgtgaccat gatcttctgg tgatcggtgc cgaagtgcgt cgcgacctgg
     3901 tcggagtaga cgaactcgtc cccggactcc ccgccggcgg cctcaaagcc gacgctgaac
     3961 gtccgcagtc cgtgctgacc gccctcagcc agcagcgcca cgaccaagct ggaatcgatg
     4021 ccaccggaga gcaggattcc caccgggacg tcggccacca tgcgtcgctc cacagcccgg
     4081 cgcagtgcgc ccagcaccgc gccgggccac tcggccgcag tcagggcggg atcgccgcgg
     4141 gagaatatcg gctgccagta ctttcgatcc tcgtaacggc catccgggtg cacggtgcgc
     4201 accgtcgccg gtggcagttt ctgcaccccg gacaggatcg tgcggggagc cggcacgacg
     4261 gagtggaagc tcaggtaatg atggaggccc accgggtcga tggtggtgtc cacctcaccg
     4321 gcggtgagca gagcgggcac cgtggaggcg aagcgcagcc gatgcggggt ctgcgacagg
     4381 tacagcggtt tgatcccgag ccggtcccgg ccgagtatca accgcccgct gtctcgttcg
     4441 agtacggcaa aggcgaacat gcccaggaag tgatcgacgc agctggtacc ccaccggtga
     4501 taggccttga gcagtacctc actgtcggag tcggagaaga actggtagcc ggcggtgcgc
     4561 agctcgctgc gcagctcgcg gtagttgtag atgcagccgt tgaacacggc ggacaggccc
     4621 agctcgggat cgaccatggg ctgcgcggcc cggtttgaca gatcgatgat cttcaaccgg
     4681 cggtggccga gtgcggtggt gtcaccagcg tggatgcccc agccgtcggg gccgcgacgg
     4741 tgcagtgcgg tggtcatggt ggtgaccgca tcgatgtcgg ctgacgtccc gtcgaatctg
     4801 atctcgcctg tgatgccgca catcagcaag ctcctctcaa cgcaagatcc aggtgtcctt
     4861 cgcgccgcca ccgcgcgatg agttgacgat catgctgccg ctggacgcga cccgggtcag
     4921 ggcggctggg gccacctcgg cccgttcgcc gagcaggacg aacgcgcgca ggtcgatcgc
     4981 ccgcggctcc agccgggtgc cggtgaaggt ggggtgggtg gacagcgaca ccacgtcctg
     5041 ggcgacccag tcctcagggt tggcctggac ggtcgcggcg agctcggcca gctggaaccg
     5101 gtcggcctcc ggtccgatca cgaccccgtg gccgccgtag ccgttcaccg gcttgaggac
     5161 cagctcgtc
//
LOCUS       DASVXZ010000950         2267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1321473, whole genome shotgun sequence.
ACCESSION   DASVXZ010000950 DASVXZ010000000
VERSION     DASVXZ010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321473"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..1208
                     /locus_tag="VF788_19950"
     CDS             75..1208
                     /locus_tag="VF788_19950"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020672083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDR/VanB family oxidoreductase"
                     /protein_id="HEX8936402.1"
                     /translation="MEATQIDAHHPAPPDLRGRQRPDRLFKALGALITSLEWISSGAY
                     IRRPQPQQVDRDLHLVVDEVRLEAEDARSFLLVAAEGAELPRWQPGSHLEVFLPSGRR
                     RHYSLCGDPADRRSYRIAVRRLDGGGGGSRELHDSIRAGSAVTVRGPRNAFPFAPAAR
                     STAAARSSAQPAATGYLFLAGGIGITPILPMVKQAAADGAPWQLVYTGRSRASMPFLD
                     ELSALDPDCVWVRPYDEHGFPSGAELLERAPTGATVYCCGPNPMIVSVRRDFPASAAA
                     GLHFERFSAPPVLDGVPFEVALRRSNRVLMVPANASALDIIRKTVPDVAYSCQQGFCG
                     SCRTRVISGEIEHRDRVLTDHERSDTMTICVSRSRGGRIDLDI"
     gene            complement(1216..1611)
                     /locus_tag="VF788_19955"
     CDS             complement(1216..1611)
                     /locus_tag="VF788_19955"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016330506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX8936403.1"
                     /translation="MRRTTDVSELARPTVDVPEGPAPTELVIEDQVIGDGAEAIVGSQ
                     IRAHYIGVSHSTGKQFDASWDRGSPLEFRLGTGRVIKGWDDGIVGMRVGGRRRLTIPP
                     HLAYGDRGAGAAIKPGETLVFVVDLVTVR"
     gene            1750..>2267
                     /gene="hemC"
                     /locus_tag="VF788_19960"
     CDS             1750..>2267
                     /gene="hemC"
                     /locus_tag="VF788_19960"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR00212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEX8936404.1"
                     /translation="MPHVRIGTRSSPMALHQAEQVAAALEALDPAVTTELIKITTSGD
                     QWMGDLAKLGGKGAFVREIDRNLLDGSVDLAVHCLKDIPGDVPAPEGLTFAAYLQREN
                     IHDAVISRTGAPLVELAAGAVIGTSAVRRAAQLHLHYPQIKIKPLRGNVNTRLMRLDE
                     GHFDAIVAAVAGL"
BASE COUNT          351 a          817 c          721 g          378 t
ORIGIN      
        1 caaggagttc tccaccgagc aggccgtcgc ctacctggcc acctcccctg cagccaccgc
       61 cgcggcggcc tgacatggaa gccacccaga tagatgctca ccaccccgcc cctcccgact
      121 tgcgggggcg ccaacgtccc gatcggttat tcaaagcgct cggggcgctg atcactagct
      181 tggaatggat ctccagcggc gcctacatcc gccgcccgca gccacagcag gtggatcgag
      241 acctccatct ggtggtggac gaggtccgcc tcgaggcgga ggacgcgcgc agcttcctcc
      301 tggtcgccgc tgagggtgcg gaactacccc gctggcagcc aggcagccac ctggaggtgt
      361 tcttgccttc cgggcggcgg cgccactatt cgttgtgtgg ggacccagcc gaccgtcgtt
      421 cttaccggat cgcggtccgg cggctcgacg gcggcggtgg cggttcgcgg gagctgcacg
      481 actcgatcag ggccgggagc gccgtcaccg tccgcggtcc gcgcaacgcc ttccccttcg
      541 cgcctgctgc ccgatcgacg gctgccgccc gatcgtcggc tcagccggca gcgaccgggt
      601 acctgttcct tgccggcggg atcggcatca ccccgatcct gccgatggtc aagcaggcgg
      661 ccgccgatgg tgcgccatgg cagctcgtct acaccggccg ttcgcgggcg tcgatgccct
      721 tcctcgacga gctcagtgcg ctggatcccg attgcgtgtg ggtccgaccg tacgatgagc
      781 acggcttccc ctctggtgcc gagttgctgg agcgcgcccc caccggggcc accgtgtact
      841 gctgcggccc gaatcccatg atcgtcagtg tccgccggga tttcccggcg agcgccgcgg
      901 cggggttgca cttcgagcgg ttctccgcac ctcccgtgct ggacggcgtg ccgttcgagg
      961 tcgcgctacg acgtagcaac cgcgtgctca tggtgcccgc caacgcctcc gcgctcgaca
     1021 tcatccgcaa gacagtgccc gacgtcgcct actcgtgcca gcaaggcttt tgcggcagtt
     1081 gccgaacccg ggtgatctcc ggggaaatcg agcaccgcga ccgggtgctg accgatcacg
     1141 agcgcagcga caccatgacg atctgcgtgt cgcgtagccg cggcggccgg atcgacctcg
     1201 atatttagtg gatgttcaac ggacggtcac caggtcgacg acgaaaacga gggtctcacc
     1261 gggtttgatc gcggcccccg ccccacgatc gccgtaggcg aggtgcgggg ggatggtgag
     1321 cctgcggcga cccccgaccc gcatgcccac gatcccatca tcccaaccct tgatcactcg
     1381 tccggtgccg agccggaact ccagcggcga gccgcgatcc caggatgcgt cgaactgctt
     1441 tccggtggaa tgggaaacgc cgatgtagtg cgccctgatc tgcgagccca cgatggcctc
     1501 ggcgccatcg ccgatcacct ggtcttcgat caccaactcg gtcggcgcag ggccttcagg
     1561 tacatccaca gtggggcggg ccagctcgct cacgtcggtc gtcctcctca tcactccgcc
     1621 accgtcgacg gatcaccatc ctggcagccc gccggtgcgc cgcaaccggt ggctcagcga
     1681 ccccgtcacc agcagccgcc tgcgccagcc tgattctcgg ccccatcggt gagtgcgtaa
     1741 ggttttggta tgccgcacgt gcgaatcggc acccgctcca gcccgatggc tctgcaccag
     1801 gccgagcagg tggccgctgc cttggaggcg ctggatcccg cggtgaccac tgagctgatc
     1861 aagatcacaa cgagtggcga ccagtggatg ggcgacctgg ccaagttggg tggcaagggc
     1921 gcgttcgtgc gcgagatcga ccgcaacctc ctcgatggct cagtggatct cgccgtgcac
     1981 tgcctcaagg acatccccgg agacgtcccc gcgcctgagg gcctgacctt cgccgcctat
     2041 ctccagcggg agaacattca cgacgccgtc atctcccgca cgggcgcccc gctggtcgaa
     2101 ttggccgcgg gtgccgttat cggcaccagc gccgtgcgcc gcgcggccca actgcacctg
     2161 cactacccgc agataaagat caaacccctt cggggaaacg tcaacactcg cctgatgcgt
     2221 ctggatgagg gccacttcga cgcgatcgtg gccgcggtcg ccggcct
//
LOCUS       DASVXZ010000951         2878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1410669, whole genome shotgun sequence.
ACCESSION   DASVXZ010000951 DASVXZ010000000
VERSION     DASVXZ010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1410669"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VF788_19965"
     CDS             <1..448
                     /locus_tag="VF788_19965"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEX8936405.1"
                     /translation="VMRDGPCGPFGVVTLVLVLIAQATALGALAQTSRLITVILAMIA
                     GRAACSWCARRGMPAARPAGMGALVAGSQPVAVPVTWLAILLAGGLLAVPGRPWQGPL
                     AVILASLLVITISAHTRRRFGGVTGDVLGATTELTTTVILAVCAVG"
     gene            complement(529..1632)
                     /locus_tag="VF788_19970"
     CDS             complement(529..1632)
                     /locus_tag="VF788_19970"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEX8936406.1"
                     /translation="MNAAPLFTRLPHRGPVSPQRRAEILAAPGFGKYFTDHMVEISWT
                     AGCGWHDAQIGPYQQLVMDPASMVLHYGQAIFEGLKAYRQPDGTVSCFRPLANAARLR
                     SSARRIAMPELPDELFLGSLRELVRADIGWVPASGGEESLYLRPMLFATEVGLGMRPA
                     SSYRYLLIASPAGPYFRNGLEPVSVWLCTEYVRAAPGGTGAAKFAGNYAASLVVQQQA
                     ADNGCDQVVWLDAVERRWVEEMGTNNLFFVFGEGKQARLVTPELTGTLLPGITRDSLL
                     TLARDHGLGVEERRISTEEWEKGVQTGDISEVFACGTAAVITPIGRVAHPNGEFTIGS
                     GAPGPITAQLRASLTAIQRGAAPDPHHWMTPLS"
     gene            1708..2838
                     /gene="galT"
                     /locus_tag="VF788_19975"
     CDS             1708..2838
                     /gene="galT"
                     /locus_tag="VF788_19975"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009950102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HEX8936407.1"
                     /translation="MREPRTVRITRTRLADGRALTYYDDCERYISGAVTRPLRDTRDL
                     PPHQAQPTMRLDVLTGEWVIFAPHRMDRTHLPEAASCPLCPSRNSAVTEIPAEDYDVV
                     VFDNQFPSLTPTTGPVPALVNGDPLWPQLPAIGRCEVICFTSEHGCSFAGLPPGRAAT
                     VILAWADRTQELSKVDNTRQVFCFENRGAETGVTLHHPHGQIYAFPFVSPRTERLLAR
                     ATAHRENTGRDLLSDVLAAELRAKTRVVYAGAAWTAYVPAAARWPVELHLVPHRAVPD
                     LAALDSAELTELAHLYPALLRRVDEFFADQGSAGPVPYVAGWHQAPVGPGRELTRLHL
                     ELFSVRRAAGKLKYLAGSESGVGVWLNDTTPEQIAHRLRELA"
BASE COUNT          464 a          974 c          977 g          463 t
ORIGIN      
        1 cgtgatgcgg gatgggccgt gcgggccatt cggagttgtc acactggtgt tggtgctgat
       61 cgcgcaggcc acggcgctgg gagccctcgc acaaaccagc cggctgatca ccgtgattct
      121 ggcgatgatc gccgggcgag cggcctgcag ctggtgcgcc cggagaggga tgccggctgc
      181 ccggcccgcc ggcatgggtg ccctcgtggc cggtagccag cccgtcgcag tacccgtgac
      241 ctggttggca attctgctgg ctggtggcct gctggcggtg cccgggcggc cctggcaggg
      301 cccgctggcg gtgatcctgg ccagtctcct ggtgataacg atctcagcgc atacccgccg
      361 ccgattcggt ggcgtcaccg gcgacgtact aggcgccacc accgaactga ccaccacagt
      421 catcctcgcc gtctgtgccg tcggctgacc ccgacatgga gacatatcgg ggtcaaaaca
      481 gtccgtgtaa gcccgatatg tctccatgtc gagctggaag atgggcgatc agctgagggg
      541 ggtcatccag tggtgcgggt ctggcgcggc gccgcgttgg atggcggtga gggaggcacg
      601 aagctgggcg gtgatggggc cgggcgcgcc gctgccgatg gtgaactcgc cattggggtg
      661 ggcgacccgg ccgatgggcg tgatcactgc ggcggtcccg caggcgaaga cctctgagat
      721 gtccccggtc tgaacgccct tctcccactc ctccgtggag atccgtcgct cctcgacgcc
      781 cagcccgtgg tcccgggcca gggtgagtag ggaatcacgg gtgatcccgg gcagcaaagt
      841 gccggtgagc tcaggggtca ccagccgcgc ctgcttgccc tcgccgaaga cgaagaagag
      901 attgttggtg cccatctcct cgacccagcg ccgctcgacc gcatccagcc acacgacctg
      961 gtcgcaaccg ttgtcggcgg cctgctgttg gactaccaac gaggcggcgt agttgccggc
     1021 gaacttggct gctccggtac cgccgggagc ggctcggaca tactcggtgc acagccacac
     1081 gctgaccggc tcaagcccgt tgcggaagta cggccccgcc ggagatgcga tgagcaggta
     1141 gcggtagctc gacgcaggcc gcattccgag gcccacttcg gtggcgaaca gcatcggtcg
     1201 caggtacagc gactcttccc cgccggaggc gggcacccag ccgatgtcag cgcgcaccag
     1261 ctcacgtagt gagccgagga agagctcgtc gggaagctcc ggcatcgcta tccggcgggc
     1321 cgaggagcgg agccgggcgg cgttggccag cggccggaag caggacactg tgccatctgg
     1381 ctgccggtaa gctttgagac cctcgaagat cgcctgcccg tagtgcagca ccatgctggc
     1441 cgggtccatc accagctgct ggtaggggcc gatctgggcg tcatgccagc cacagcccgc
     1501 cgtccagctg atctccacca tgtgatcggt gaagtatttg ccgaagccgg gcgcagccag
     1561 gatctccgcg cgccgttggg gcgacaccgg tccgcggtgc ggcagccgag tgaacagtgg
     1621 cgcagcgttc atgacctgca cggtatcccg tcgggcaccg aaatggtagg acgtcccact
     1681 agtcaaaaca tccgtcatgc tgctcgggtg agggaaccac gaaccgtgcg gatcacgcgt
     1741 actcgactgg ccgacggtcg ggcattgacg tactacgacg attgcgagcg ctacatatcg
     1801 ggcgcagtaa cccgacccct ccgcgatact cgcgacctgc ccccgcatca ggcccagccc
     1861 acgatgcgcc tggacgtgct caccggggag tgggtcattt tcgcccccca ccggatggac
     1921 cggacgcacc tgcccgaggc ggcgagctgc ccgttgtgcc ccagccggaa cagcgccgtc
     1981 accgagatac cggccgagga ctacgacgtg gtggtgttcg acaaccagtt tccctccctg
     2041 accccgacca cgggtccggt acccgccttg gtgaacggcg acccgctgtg gccgcagctg
     2101 cccgcgatcg gccggtgtga ggtgatctgc ttcaccagcg agcacggctg ctcatttgct
     2161 gggctccctc cgggccgcgc agcgacagtg atcctggcct gggccgatcg gacccaggag
     2221 ctgtccaagg tggacaacac caggcaggtg ttctgcttcg agaaccgcgg ggcagagaca
     2281 ggcgtgacac tgcaccaccc acatggccag atctacgcct tccccttcgt ctccccgcgc
     2341 accgagcgcc tgctggcgcg agccaccgcg caccgcgaga acacgggccg cgacctgctg
     2401 tcggatgtgc tcgctgcgga gctgcgggcc aaaacgcggg tcgtgtatgc gggcgccgca
     2461 tggacggcgt atgtgcccgc cgccgcccgc tggccggtgg aactgcatct cgtgccgcac
     2521 cgagcggtgc cagacctggc cgccctggac agcgccgaac tcaccgagct cgcccacctc
     2581 taccccgcat tgctgcgccg ggtggacgag ttttttgctg accaaggcag tgcaggaccg
     2641 gtaccgtatg tcgccgggtg gcaccaggcc ccagtcgggc ccgggcgcga gctgactcgg
     2701 ctgcatctag agctgttctc cgtacgccgc gctgccggaa agctcaagta cctcgccggg
     2761 tccgagtctg gagtgggcgt gtggctcaac gacaccacgc ctgagcagat cgcccaccgg
     2821 ttgcgagaat tagcgtgagc accgcgttgc gagccgcctt ccacgccgcg ttcggccg
//
LOCUS       DASVXZ010000952         1840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1160197, whole genome shotgun sequence.
ACCESSION   DASVXZ010000952 DASVXZ010000000
VERSION     DASVXZ010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1160197"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VF788_19980"
     CDS             <1..439
                     /locus_tag="VF788_19980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VC0807 family protein"
                     /protein_id="HEX8936408.1"
                     /translation="WLTTGLLVIRTVIGYTTGSAFLYFLQPTLQNFVIAFVLLATVGL
                     RRPLIARLADDFCAFPATLTSNPKVQRFFRRVSLLWALVFLTNGAATLWVLARATIGN
                     FLMITTAGSFTLVGVAAAVSLLWFRRELRGEGIRLRFGVAAAI"
     gene            complement(482..1216)
                     /locus_tag="VF788_19985"
     CDS             complement(482..1216)
                     /locus_tag="VF788_19985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005452329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8936409.1"
                     /translation="MITGWNALVTGGSSGIGAAIAERLAATGCRVVVLGRNPEALAEL
                     AHRTGARAVVADLSSAEGLARAADATADVDLLVHSAGRGWAGDLTAMTGTDIAALVAL
                     NLTAPMHLTRAALPGMRARGRGQLVFVASIAAVGVGGEAVYAATKAGLRAFAASVRLE
                     VSDQGIGVTTLLPGAVRTPFFDHRGKAYDRRLPRQVEPGEVASALLGAIERRRAEVFV
                     PRWLTVAARVRGAAPEVFHRLAQRFG"
     gene            complement(1213..>1840)
                     /locus_tag="VF788_19990"
     CDS             complement(1213..>1840)
                     /locus_tag="VF788_19990"
                     /inference="COORDINATES: protein motif:HMM:NF038012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX8936410.1"
                     /translation="RVDHLVVFGSLGCVAGLSAFLVLARPTGGSAQLEKDGWALVPLA
                     VVLGVSVIVCLAVAGRFSGAVQVAALATATGVLYGLTAGLMKVITSDFRSGGFAEPFG
                     HPVLYVVCAVGPLGFLLSQNTFQKGTLIAPALAIITIVDPLVGIAIGVSWLGERVSSS
                     PAVLAGELISVLVLIGSVWLLANRGTQLRREMEQSPQQEAPQGRGAWG"
BASE COUNT          299 a          673 c          583 g          285 t
ORIGIN      
        1 gtggctcacc accggcctgc tcgtgatccg tactgtcatc gggtacacca ccgggagtgc
       61 attcttgtac ttcctgcagc ccacgttgca gaacttcgtg atcgcgttcg tgctactggc
      121 cacggtggga ttgcgccgac cgctgatcgc ccggctggct gacgatttct gcgccttccc
      181 cgccacgctc accagtaacc cgaaggtgca gcggttcttc cggcgggtgt cattgctctg
      241 ggcgctggtg tttttgacca acggcgccgc cacgctgtgg gtactggccc gtgccacgat
      301 cggcaacttc ctcatgatta ccactgccgg gtcgttcacc ctggtgggag tcgctgcggc
      361 ggtgtcgctg ctgtggttcc gccgggaact acgtggcgag ggcatccggc tgcggttcgg
      421 ggttgccgct gcgatctgac cgcgcgtcgg caactctgta cttgatcaac tccattggtg
      481 ctcagccaaa ccgctgggcc aggcggtgaa acacctcagg tgccgctcct cgcacccgtg
      541 cggccaccgt cagccaccgc ggcacgaata cttctgcccg cctgcgttca atcgccccga
      601 gcagcgccga cgcgacctca ccaggttcaa cctgacgcgg taagcgccgg tcataggcct
      661 tcccgcggtg gtcgaagaag ggggtgcgca ccgcgccggg gagcagggtg gtgacgccga
      721 tcccctggtc ggatacctcg aggcggacgc tggcagcaaa ggctcggagc ccggccttcg
      781 tggcggcgta gaccgcttcc ccgccgaccc cgaccgcggc gatcgacgcc acgaacacca
      841 gctggccacg cccgcgtgcc cgcatcccag gcagcgcagc tcgggtgagg tgcatcgggg
      901 cagtcaggtt cagtgcgacc agcgcggcga tgtccgtccc ggtcatcgcc gtcaggtccc
      961 cggcccatcc gcggcccgcc gagtgcacca gcagatcgac gtccgccgtg gcgtcggccg
     1021 cccgggccag accctcggcg ctggacaggt cggcgaccac cgcgcgagca ccggtccggt
     1081 gggccagctc cgccagcgcc tctgggttcc gaccgagtac caccacccgg cagccagtcg
     1141 cggcaagtcg ctccgcgatg gcggcaccga tccctgacga tccgccagtg accagagcat
     1201 tccagccggt gatcatcccc aggctccccg gccctgcgga gcctcttgct gcggcgactg
     1261 ttccatctcg cggcgtagtt gcgtgccacg gttggccagt agccacacac tgccgatcag
     1321 gaccagcacc gagatcagct caccggcaag caccgctggc gaactgctca cccgctctcc
     1381 cagccagctc accccgatcg cgatgccaac cagcggatca acgatcgtga tgatggccag
     1441 cgcgggggcg atgagggtgc ccttctgaaa ggtgttctgg ctgagcagga accccagggg
     1501 gcccaccgca cacactacgt agagcacggg atggccgaat ggctcggcga atccgcccga
     1561 tcggaagtcg ctagtgatca ccttcatcag gccggcagtg aggccgtaca gcacgccggt
     1621 ggccgtcgcc aacgcggcca cctgcacggc tccgctgaac cggcccgcca cggccaggca
     1681 gacgatcacg ctcaccccca gtacgacggc caggggcacc agcgcccatc cgtccttctc
     1741 cagttgcgcg gagccaccgg tcggccgggc gagcaccagg aaagccgaca acccggccac
     1801 gcagcccagg gagccgaaca caaccaggtg atccacccgg
//
LOCUS       DASVXZ010000953        14644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1321728, whole genome shotgun sequence.
ACCESSION   DASVXZ010000953 DASVXZ010000000
VERSION     DASVXZ010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 14644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14644
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321728"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..778)
                     /locus_tag="VF788_19995"
     CDS             complement(<1..778)
                     /locus_tag="VF788_19995"
                     /inference="COORDINATES: protein motif:HMM:NF024954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8936411.1"
                     /translation="MAAAASLTLREGDRGRLEALARSVSARPSVVQRARIVLMSAEGL
                     TNTEIARRTGATRPTVISWRNRYAAGGINALGDLPRPGRPAAVDELEVVATTLANGGR
                     PPAHLGVNQWSSRLLGQHLGISFATVARIWRKWGIQPDHVETFTFATDLQRQAQIRDI
                     GGLYVNLSQRAAAMHRPGAHHATGGKTAGQPDPWLKLVEVSLGIITQQAIRRGTFASV
                     RNLIDALSSLTDGWRDDHHESSDKDATSMIEATTSVASNDR"
     gene            1525..2394
                     /locus_tag="VF788_20000"
     CDS             1525..2394
                     /locus_tag="VF788_20000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEX8936412.1"
                     /translation="MYPSRFHYEAPRSLDEAFGVLQTYGDEAKILAGGQSLIPLIKLR
                     FASPACIVDINNIPGLEFHEEDSDGSLHIGALCRHRDLERSALLRSKYPVMSVVAPLI
                     SDPMVRNRGTLVGSLCHADPQGDWASTMLALGGEVIARNADGGERAIPVSQFVVGPFQ
                     NTLQQGEIAVRARVPAPRGTRSGTYLKLERRVGDFATVGVAINLESSGGTINRAGIAL
                     TGVGPNNIQCTAAEQALAGKTLNASTIEQAARLAAEAAQPKTDVRGSAEYKRHVVYTF
                     VMRGLSNREAMAA"
     gene            2453..2947
                     /locus_tag="VF788_20005"
     CDS             2453..2947
                     /locus_tag="VF788_20005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX8936413.1"
                     /translation="MEERRINVVVNGEPKSVDVEPRLLLAHFLREVLGLTGTHIGCDT
                     TNCGVCTVLVDGMPMKSCTMFAVMLDGHEVETVEGLGLPSELHPIQEGFREEHGLQCG
                     YCTPGMMMACKAILNENPNPTEEDIRWGLAGNLCRCTGYQNIVKSVLWAAEKMRSEAG
                     SFSR"
     gene            2986..5373
                     /locus_tag="VF788_20010"
     CDS             2986..5373
                     /locus_tag="VF788_20010"
                     /EC_number="1.2.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic carbon-monoxide dehydrogenase large
                     subunit"
                     /protein_id="HEX8936414.1"
                     /translation="MAQALDEIKIGGLGSSRKRVEDDRFLRGKGNYTDDFKLPGMVHM
                     EILRSPLAHARIKSIDTSKAWQIPGVHMVLTGDMAAQHNLAWMPTLSYDTQPVLATDK
                     VRFQGQEIACVVADDPYIAKDGCEAIFVEYEPLPVIVNPYQAVAEGAPVIRDDKEGQT
                     DNVCYRWEVGDRDGTERAFAQADLVSKLELHYPRSHPSPIECCGSIADYNSATTKLTV
                     YMTTQAPHIIRAAVAIVAELPEHMIRIISPDIGGGFGNKVPVYPGYVCSILCSILLAR
                     PVKWIEDKTGNLISTHYARDIYYKGELALRKDGKILAVRFHCDSDNGSSFSDAQPTKF
                     KIGLMHSAFSAYDIPYGYMTAQGHYTNKAPGGVAYRCSFRVTEAMFFQERAIQAAAYD
                     LGMDQAAFRRLNLVKDHQFPFRTPYGFLLDSGQYEKCLDVGLNAIGYDEFLREKEAAR
                     AQGRRLGIGISTMTEPLGAGNSREYDILGIKMFDAAELRVHPSGKAILKIGSKTQGQG
                     HETTFAQIVTHELGIPAADILVQHGDTDNTPFGMGTYASRSTPVAGAATAMVARKVRA
                     KARKLAAHLLEVSEEDIEWELGRFHVRGAPNNGVSIQECAMAAYGNMPDGLEPGLENN
                     AYYDPPNMTWPFAAYIVTVEVDPETGVWDVLRMVAVDDCGVRINPMIVEGQIMGGMTE
                     AYAMANMQFITYDAEGNCVGSNYMDYLLPTAWETPGFELHEVVTPSPHHPIGAKGIGE
                     CAAVGGPAAFVNAVMDAIDDTGVRNIDMPLIPDRVWEALKYRRDISGMPPVKSDE"
     gene            5395..6390
                     /locus_tag="VF788_20015"
     CDS             5395..6390
                     /locus_tag="VF788_20015"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEX8936415.1"
                     /translation="MTMDGWDVLERARELSQRGEAFALATVVWRRGPSSGKEGCRAVI
                     TASGQVFGFIGGACAEPVVVREARHILTEGVPRLIFLGTPDELESVAVREGISYVPMS
                     CQSEGALEIYIEPVEPKTHLVVVGRSPMVESLVQMGQAIGWRTVLVDPDGGTAESHPL
                     AQHVVSKLDFKAAGVDERSLVVVATQGHHDEEAIEQALIAGPAYVGLVGSRPRAKSVL
                     EFLESRGLSKETLARVKVPAGLDLGKVSHREIAVGVLAELVKLRAAGELARGMRPELP
                     EIVEAIDPVCGMTVEVESARHKVDHDGATYYFCAPGCARAFKKDPAEFIGSGAKS"
     gene            6434..7000
                     /locus_tag="VF788_20020"
     CDS             6434..7000
                     /locus_tag="VF788_20020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX8936416.1"
                     /translation="MLIESEFEVAAPLEQVWKHMQDVPRIAPCLPGAELTDVNGDVYK
                     GRVTTKMGPVKLQFAGTAQIVLRDEAAKRIVMDASGSEEKGKGQATMKVTSTMVPSGT
                     GTRVKVAQDLQLSGAAAQFGRGMVQDVTSVIMKSFAKCIADDIGRASRGEAAVQRDAV
                     PVKGFSIGMQAAMTALKRFFGRLFGRAK"
     gene            7050..7301
                     /locus_tag="VF788_20025"
     CDS             7050..7301
                     /locus_tag="VF788_20025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936417.1"
                     /translation="MGDLILLFVVLPIVAVLMNRIVTPVDRIRKTVDDILYNGVILTG
                     ELDNVPALLAETDSTVNEVAIGATRYVKRVGGLLAALGV"
     gene            7341..7568
                     /locus_tag="VF788_20030"
     CDS             7341..7568
                     /locus_tag="VF788_20030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936418.1"
                     /translation="MPAAAWVTLLAVALIVAVVGLSLVKVIAQLRHVAWTLGAIIVGV
                     NAIAYQTRTVPEVLPRVNANLAPVRAMAEQV"
     gene            7619..7804
                     /locus_tag="VF788_20035"
     CDS             7619..7804
                     /locus_tag="VF788_20035"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX8936419.1"
                     /translation="MHEFTCGHQECSSQFTASDKDVLMRQVADHLKDVHNVQTATQTL
                     LGYLETTCVTTTSSDRR"
     gene            7872..8156
                     /locus_tag="VF788_20040"
     CDS             7872..8156
                     /locus_tag="VF788_20040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936420.1"
                     /translation="MMLLAEQAPGPAEAHLFGWYLGFAIAVVVITVVVALVAPVLVLA
                     ARIARQAPQINQALQQSYRNTLPLADLRQTIDHAEVIIGGLERGRARLGG"
     gene            8162..8491
                     /locus_tag="VF788_20045"
     CDS             8162..8491
                     /locus_tag="VF788_20045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936421.1"
                     /translation="MAFLLGYAGAPDGYAPEEATFWWLAIIMGFVVLVVVILLLGSLV
                     SMVRSIDRSVVGVRDTLRAIPQNTANCALIPITADRVDAVLAEGLQHHLFLTRVLTGS
                     GTPVGKG"
     gene            8509..8859
                     /locus_tag="VF788_20050"
     CDS             8509..8859
                     /locus_tag="VF788_20050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936422.1"
                     /translation="MTVVCIGALTAVLAIFLFVIGVLLNRIADNLDDCLGNVKTIAQQ
                     AETIIPGVEHINRTGGVVAGALPLLYGGAEKIASKLAPPVPAPVNGHTNVPASGRRRS
                     RLMDTVGFRSGRSH"
     gene            complement(8977..9417)
                     /locus_tag="VF788_20055"
     CDS             complement(8977..9417)
                     /locus_tag="VF788_20055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936423.1"
                     /translation="MIRLGSLAGYSFEGPRILGGWTAPKRPAVFAIMYKPDAETKPDR
                     YAVIYVGHEDNMAEAGFPFKHPRANCWIARAGSRWKLHICTYEVDGWARSHREMITQE
                     LAAIYNPHCNEVKYDKAWEGHWIGNYESELTGPLSPTQREEGPR"
     gene            complement(9499..9786)
                     /locus_tag="VF788_20060"
     CDS             complement(9499..9786)
                     /locus_tag="VF788_20060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936424.1"
                     /translation="MRWSVGIEAEGDRIMKIEEVVELADAVAPLDGIATGIGTNRYGA
                     QVVVFADGREEAINKGKQHFADAVQKAGLPVYPIVRVEAVSEDDDDADADM"
     gene            complement(9806..10936)
                     /locus_tag="VF788_20065"
     CDS             complement(9806..10936)
                     /locus_tag="VF788_20065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX8936425.1"
                     /translation="MARNHNGFVTVLVEFGRALRSKGLSVGSGDILTYCAAMAPLDPT
                     DLIDLYWAGRTTMIVRREDLPVYDEVFRAFFLASDSPVQKMLKIKAQAAAEAEAAFDV
                     PAAEPSGKEQEEETLLGLMASNVETLKHRSFGECSDEELAAIRRIMARIKFTPPKRRT
                     RRTRTSSDGRKPDMRRTIRESMRTNGEMVELYWRRRRVRLRPLILILDVSGSMSDYSR
                     ALLQFAYSAKRASQKVEVFCFGTRLTQVTKPLQTRKPDEALARASELVVDWEGGTRIG
                     DSIDKFVRTWGRRGMCRGGVVVICSDGLDRGDPELLSDSMERLSRLCHNIVWMNPHKG
                     NNADYQPTTVGMLAAEPHIDVLLSGHDLSSLEELATLLPKLG"
     gene            complement(10964..11767)
                     /locus_tag="VF788_20070"
     CDS             complement(10964..11767)
                     /locus_tag="VF788_20070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX8936426.1"
                     /translation="MATAVFVAMSLQRPILLEGEVGVGKTELAKVLSSVFGRKLIRLQ
                     CYEGIDTNQALYEWDYARQLLYIRALSDRDVTGEEAVEKLFGPRFLLERPLMQAIQAG
                     DQAVLLIDEVDRADDEFEAFLLEVLSDFQISIPEVGTIKAENPPLVILTSNRTRDLHD
                     ALKRRCMYHWIGYPDPDREVDIVTVQAPEVSQELARKVVGAVNKLREMDLAKPPGVAE
                     TIDWARTLSFLGESSLSVSNADATLGSIIKDRDDLELVRDNLSEVTSNA"
     gene            complement(12224..12550)
                     /locus_tag="VF788_20075"
     CDS             complement(12224..12550)
                     /locus_tag="VF788_20075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936427.1"
                     /translation="MSEENENPNATDKLTGEGQQALSALRGIWKAQGQTSADLDEACG
                     NTTSCRNMETVGFHGLEDESDKPSQSVGNNLRAAWKTKLEREGKLNSESGSVRDLVFG
                     SSDQKE"
     gene            complement(12635..13261)
                     /locus_tag="VF788_20080"
     CDS             complement(12635..13261)
                     /locus_tag="VF788_20080"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013352894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEX8936428.1"
                     /translation="MSAYSLPDLPYGYDALEPYFDARTMELHHTQHHRRYVDQLNAAV
                     DTSPTLRSVSEQPVDDLLWDIGKVSEETRNAVRNYGGGHANHSLFWTILSRDGGGKPT
                     GRLGEAITEEFGSFTAFRDRFTGVANSHLGSGWAWLVRVRNRLVVYSLLNEDSPLTAE
                     ETPILGLDLWEHAYYLRYQGARADYIEAFWNVVNWEEVGRRFEEAKRS"
     gene            13881..>14644
                     /locus_tag="VF788_20085"
     CDS             13881..>14644
                     /locus_tag="VF788_20085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936429.1"
                     /translation="MISRTPRFVRWRLCAVAAAVPIAMIAPWPAQAGPEPVDALDPVN
                     VSAPGSSAPLTRTMMGQDDDVAVGDPAPDPNPDPARRGRNNERHRALKEAPDGGGGKN
                     PNPNCTLIVPDAPFTAQGLATPYQLFATNRRQGQCREANDNQSAFVEATIINPATGAL
                     SIYRPLVIDRGTRPGAPPVMPKLPAGSVVGLWFGFQGTTLTLRGATAGCVNGLPGSPF
                     GQFAYCGAPEFFRAANAAIRAGKLKVPPVGTARDGQP"
BASE COUNT         2800 a         4309 c         4646 g         2889 t
ORIGIN      
        1 gacggtcgtt gctcgctacc gaggtcgtag cttcaatcat gctggtggca tctttgtccg
       61 atgactcatg gtggtcgtcc cgccagccgt cggtaaggga gctcaaggcg tcgatgagat
      121 tgcgcaccga ggcgaaggtc ccgcggcgga tggcctgctg ggtgatgatg ccgagggaaa
      181 cctcgacaag cttgagccac ggatccggct gaccagcggt ttttcctcca gttgcgtggt
      241 gtgcgcctgg ccgatgcatc gccgcggcac gctgcgacag attgacgtac agcccgccga
      301 tgtcccggat ttgggcctgt cgctggaggt cggtggcgaa ggtgaaggtt tcgacgtggt
      361 ccggctggat gccccacttg cgccagatcc gagcgacggt ggcaaacgag atgcccagat
      421 gctggccgag tagccgggat gaccactggt tgacgcctag atgcgctggt ggacgaccgc
      481 cattggcgag cgtggtggcc accacctcga gctcgtccac cgcggccggt cggccaggtc
      541 ggggtagatc gccaagggcg ttgatccctc cagcggcata gcggttgcgc cagctgatga
      601 cggtcgggcg agtcgcaccg gtacgccggg cgatttcggt gtttgtcaga ccctccgcag
      661 acatcaagac gatccgcgcc cgctggacca cactcggccg cgctgacact gagcgtgcca
      721 acgcctcgag gcgtccgcgg tcaccctcgc gcagggtcaa cgaagctgcg gcggccatac
      781 ctcatcctct cgcaactcaa actgtaaaac aactatcaac acagggccct gccagggacg
      841 tcttgggcgc cgacacgcca gctcaggagc acgtagatcc tcttgacacg cccatctcat
      901 ccgtgtggac taatgcccca acgtccctga aaactggacg tagcagccag cgagcccacg
      961 agaacacggc accggagcca gagaggggcc agacgatggc gatcgaatct gacggacata
     1021 gccgaggtaa tcctcgaatt tacgagctga tcgagaacgc acccaagtct gggaagagcc
     1081 caaccatttg ggcgtggcca gaggtcgtgg actggcttcg tgtcgctggc cagccggtgg
     1141 ctggtccatg gccgccgcac cagcagcctc ggccgaatcc cgaggaagag agccagccgg
     1201 tggcggttgt cgaaccggaa cgctccgcgc cgaagcagta ccggccgtcg aacgaacagg
     1261 catccgaatc cgcacccgca ccggcacctc gggcgagcga accccggaat tacggagtcg
     1321 gctcagcgga tgatgaccct ccgccgcggc acgggcttgg cctgctggat agctgaggcg
     1381 cagctagcgg gtcgatcatc tcgtatgaca caaactttgg tcggcgataa ttggtcgtcc
     1441 ttcggggtat ccgaaagaac cacgaaggta cgccaccctt ttgtgcagct tttccgcgga
     1501 atgttcagaa ttaggagggc ctggatgtac ccgtctcgtt tccactacga ggccccacgc
     1561 tcgctcgacg aagcgttcgg cgttttgcag acgtacggtg acgaggcgaa gatcctcgcc
     1621 gggggccaaa gcctcatacc actcatcaag ctgcgctttg cttcgccagc gtgcatcgtt
     1681 gacatcaaca atatcccagg tctcgaattc cacgaagagg actccgacgg gtcactgcac
     1741 atcggtgcgc tttgtcggca cagggatctg gaacggtcag cacttctccg gagcaagtat
     1801 cccgtcatgt ccgtggtcgc accgctcatc tccgacccca tggttcgtaa ccggggaacg
     1861 ctggtcggct cgctctgcca cgctgatccg cagggagact gggcgtcgac gatgttggcg
     1921 ctgggtggcg aagtcatcgc ccggaacgct gacggcggcg agcgtgccat tccagtgtct
     1981 cagtttgtgg ttgggccgtt ccagaacacc ctgcagcaag gggagatcgc agtccgggcc
     2041 cgagtgccgg cgccgcgagg aacgcgttcg ggaacgtacc tcaagctcga gcggagggtg
     2101 ggagacttcg cgacggtcgg cgtggccatc aatctggaga gctctggtgg cacgatcaac
     2161 cgggcaggta ttgcgctcac cggtgtaggg ccgaacaaca ttcagtgcac tgctgccgag
     2221 caggcacttg ctggtaagac gttgaacgcc agcacgatcg agcaagcagc gcgactggct
     2281 gcggaggccg ctcaacccaa gaccgatgtc cgcggcagcg cggagtacaa gcggcacgtt
     2341 gtgtacacct tcgtcatgcg agggttgagt aaccgagagg ccatggcggc ctgaagcgcc
     2401 gcatattcca gatgagtact ttaagaagta ttggcgatgt caaggaggcg gcgtggaaga
     2461 gcggcgaata aacgtcgtag tgaacgggga accgaaatct gtcgatgtcg agcctcgctt
     2521 actcctggcc catttcctgc gtgaagtgct aggactaaca ggcacgcata tcggctgcga
     2581 taccacgaac tgtggtgtgt gcaccgtact tgtcgacgga atgcccatga agtcatgcac
     2641 catgtttgcg gtcatgttgg acgggcatga agtagaaacc gtggaaggcc ttggcctgcc
     2701 cagcgagctc caccccatcc aggagggttt ccgggaggag cacggactgc agtgcggtta
     2761 ctgcacgccc ggcatgatga tggcatgcaa ggcgattctg aacgaaaacc ccaacccgac
     2821 agaggaagat attcgctggg gactggccgg caatctctgt cgttgcaccg gttaccaaaa
     2881 catcgtgaag tcggttcttt gggctgcaga gaagatgcgg tccgaggcag gatcatttag
     2941 tcgctgacgg ctagaggcta gagtcgacga caagggagac gtgacgtggc tcaggcattg
     3001 gacgaaatta agatcggcgg cttgggttcg agccgcaagc gggtagagga cgaccgcttc
     3061 cttcggggta agggcaacta caccgacgac ttcaagttgc ccggcatggt gcacatggag
     3121 atcctccgta gcccattggc ccacgcgcgg atcaagtcga tcgacacgag taaggcttgg
     3181 cagatccccg gtgtgcacat ggtgctcacg ggggatatgg ccgcccaaca caacctggcg
     3241 tggatgccga ccctgtccta tgacacgcaa ccggtactcg ccactgacaa ggtgcgcttc
     3301 cagggccagg aaatcgcgtg cgtggtcgcc gacgaccctt acatcgcgaa ggacggctgc
     3361 gaggcgattt tcgtcgagta cgagccgctc cccgtgatcg tcaaccctta tcaggcggtt
     3421 gctgagggcg ctccggtgat ccgggacgac aaggaaggcc agacggacaa cgtctgctac
     3481 cgctgggaag tgggcgaccg ggacggcacc gaacgggcct tcgcccaggc cgacctggtc
     3541 tccaagctcg agctgcacta cccgaggtcg cacccctcgc cgatcgagtg ctgcggttcg
     3601 atcgcggact ataactcggc gaccacgaag ttgaccgtgt acatgacgac ccaggccccg
     3661 cacatcatcc gggctgcggt ggccatcgtc gcggaacttc ccgagcacat gatccggatc
     3721 atctcgcctg atatcggtgg tggattcggc aacaaggtgc ccgtctaccc gggttatgtc
     3781 tgctcgatcc tttgctcgat cctgctggcg cggccggtca agtggatcga ggacaagaca
     3841 ggcaacctca tctccacgca ctacgcgcgc gacatctact acaaggggga gctcgcgctc
     3901 cgcaaggacg gcaagattct cgccgttcgg ttccactgtg acagcgacaa cggatcctcc
     3961 ttctcggacg ctcagcccac gaaattcaaa attggactga tgcattcggc gttctctgcc
     4021 tatgacattc cgtacggata catgaccgca cagggtcact acacgaataa ggcgcctggc
     4081 ggtgtcgcat atcggtgttc cttccgggta accgaagcaa tgttcttcca ggagcgagca
     4141 attcaggcag ccgcctacga tttgggtatg gatcaggcgg cattccgtcg gctcaacctg
     4201 gttaaggacc atcaattccc gttccgtact ccttacggct tcctcctgga ctcgggacag
     4261 tacgagaaat gtctcgacgt cgggttgaat gccatcggct acgacgagtt ccttcgcgag
     4321 aaggaagcgg cacgtgcaca gggtcggcga ctcggcatcg gtatctccac catgaccgaa
     4381 ccactcggag ccggtaacag ccgcgagtac gacatcctcg gcatcaagat gttcgatgcc
     4441 gcggagctgc gggtgcaccc gagtggtaag gcgattctga agatcggatc gaagactcag
     4501 ggccagggcc acgagacgac gttcgcgcag atcgtcaccc acgaactcgg catccccgcc
     4561 gccgacatcc tcgtacagca cggcgacacc gacaacacac cgttcggtat ggggacctac
     4621 gcatcccgca gcacgccggt tgcgggtgcg gcaaccgcca tggtggcgcg caaggtccgg
     4681 gccaaggcga ggaagttggc cgcacacctc cttgaggtct ccgaagaaga catcgagtgg
     4741 gagcttggtc gcttccacgt gcggggtgct ccgaacaacg gggtgagcat ccaggagtgc
     4801 gcgatggcgg cctacggcaa catgcctgac ggcttggagc cagggctgga gaacaacgcg
     4861 tactacgacc cgccaaacat gacatggcca ttcgcggcgt acatcgtgac ggtcgaggtc
     4921 gatccggaaa ccggtgtatg ggacgtgctg cgcatggtcg cggtcgatga ctgcggtgtg
     4981 cgcatcaatc cgatgatcgt cgagggtcag atcatgggcg gcatgaccga ggcctacgcg
     5041 atggccaaca tgcagttcat cacctacgac gccgagggca actgcgtggg ttcgaactac
     5101 atggactacc tgctgccaac ggcgtgggag accccgggct tcgagcttca cgaggtcgtt
     5161 acgccctcac cgcaccaccc gatcggtgct aagggcatcg gggagtgcgc cgctgtcggc
     5221 ggtcctgcgg cattcgtcaa cgcggtcatg gacgccatcg acgacaccgg agtgcgcaac
     5281 atcgatatgc cgctgatccc ggatcgggtg tgggaggctc tgaagtaccg gcgagacata
     5341 tcgggaatgc ctccggtcaa gtcggacgag taacgagact ggcagattgg gtcgatgacc
     5401 atggacgggt gggacgttct tgagcgtgcc cgcgagctgt cgcagcgtgg tgaggcgttt
     5461 gcgcttgcca ctgttgtgtg gcggcggggc ccgtcctcgg gcaaggaggg gtgccgggct
     5521 gtcattacag cctcagggca ggtgtttgga tttattggtg gcgcctgcgc tgaacctgtg
     5581 gttgttcgcg aagcccggca catcctcacc gaaggtgtgc cgcgcctcat atttcttggc
     5641 acgccagacg agctcgagtc cgtggcagta cgggagggca tcagctacgt gccgatgtcc
     5701 tgccagagcg agggtgcttt agagatctac atcgaaccgg tagaacccaa gacccacctg
     5761 gtcgtcgtcg gacggtcgcc gatggtggaa tccctcgtgc agatgggcca ggcgatcggc
     5821 tggcggacgg ttctcgtcga tccggacggc ggtaccgctg aaagccatcc gttggcgcaa
     5881 cacgtcgtca gcaaactcga tttcaaggca gctggggttg atgagcgctc cctcgtggta
     5941 gtggccacgc aaggtcatca cgacgaggaa gcgattgagc aagcactcat cgcaggaccc
     6001 gcttacgttg gcttggttgg ttcccggccg cgggcaaagt ctgtgctcga gtttctggag
     6061 agccggggat tgtccaagga gaccctggcc agggtgaagg tgccggccgg tctcgacctc
     6121 ggaaaagttt cgcaccgcga aattgcggtg ggggtgcttg ctgagttggt caagctgcgg
     6181 gccgccggcg agctagccag gggaatgcgg ccggaactgc ccgagatcgt cgaggcgatc
     6241 gacccagtat gcggcatgac agtggaggtg gaatccgccc gccacaaggt ggatcacgac
     6301 ggagcgacgt attacttctg cgctccggga tgcgccaggg cgttcaagaa agatcctgct
     6361 gagttcattg gatccggagc gaaatcgtga tcgcatgttc ggaccagggt gtggtaagga
     6421 gagcgagtag tcgatgctga tcgagagcga gttcgaggta gctgcgccgc tcgagcaggt
     6481 gtggaaacac atgcaagacg tgccgcggat tgcaccctgc ctcccgggtg ccgagctcac
     6541 tgatgtcaac ggcgacgtat acaagggccg agtgacgacc aagatggggc cggtgaagct
     6601 ccagttcgcc ggtacggctc agattgtgct gcgagacgag gccgccaagc gaatcgtgat
     6661 ggatgcgtct gggtcggagg agaagggcaa gggccaggcg accatgaagg tgacctcgac
     6721 gatggtgcct tccgggacag ggacacgcgt caaggttgcc caagacctcc agctttcggg
     6781 cgctgctgct cagttcggca gaggcatggt ccaagacgtc accagtgtga tcatgaagag
     6841 tttcgctaaa tgcatcgcgg acgatattgg acgggcctcc cgtggtgagg cagcggtaca
     6901 acgcgatgct gttccagtga agggtttcag catcggcatg caggcggcca tgactgcgct
     6961 gaaacggttc ttcggccggc ttttcggtcg agcgaagtag taataacgat ccgagagcga
     7021 aagagaggcc gaacatgctc ttgtggtggt tgggtgacct gatcctgctc ttcgtggtgt
     7081 tgcccatcgt tgcggtgttg atgaaccgaa tcgtgacgcc agtggatcga atccgtaaaa
     7141 cagtggatga cattctgtac aacggtgtca ttttgaccgg cgagctcgac aatgtgccgg
     7201 cgctgctggc ggagacggac agcacggtca acgaggtcgc cattggcgcg acccgctatg
     7261 tgaagcgcgt cggcggtctg ttggccgcac tgggcgtcta gcgagcgaat gacctcgaga
     7321 cgagagaaga ggaggaagcc atgcctgcag ccgcatgggt cacgctgttg gccgtcgcat
     7381 tgatcgtggc tgttgttggc ctgtcattgg taaaggtgat tgctcagctt cggcacgttg
     7441 cctggaccct tggtgcgatc attgtcggtg tcaacgcgat tgcttaccag acgagaacgg
     7501 ttccggaggt tctaccccgg gtcaatgcca atctcgcgcc ggtacgagct atggcagaac
     7561 aggtttgacg gtcagcgaca accaatatgg ttggcgttag aacggtaaag gagtgaagat
     7621 gcacgagttc acgtgtggtc atcaggaatg cagttcgcag ttcactgcgt ctgacaagga
     7681 cgttttgatg cggcaggtcg ctgatcacct caaggatgtc cacaacgttc agacggctac
     7741 ccaaacgctg ctgggttacc tcgagaccac ctgcgtgacg acgacgtcat cggaccgccg
     7801 ttaggtcctg tgtgtaatgt ttttgtaagg ccgttgtagg aaactactgc taccgaaagg
     7861 agggctgcgg gatgatgttg cttgcggaac aggcgcccgg gcccgctgag gcacatctgt
     7921 tcggctggta tctgggtttc gcgattgccg tagtggtgat caccgtggtg gtcgcattgg
     7981 tcgctccggt cctcgttctc gccgcccgaa tcgctcgtca ggctccacag atcaaccagg
     8041 ccctgcagca gtcatatcga aatacgcttc cgttggcgga tctacgacag acgatcgacc
     8101 atgctgaggt catcatcgga ggtctggaac gcggacgagc taggcttgga ggttagtgat
     8161 gatggcattt ctattggggt atgcgggtgc acctgatgga tatgcacctg aagaggcgac
     8221 cttctggtgg ctcgcgataa taatgggctt cgttgtcttg gtcgtggtga tcctgttgct
     8281 cggctccctt gtgtcgatgg tcaggtccat tgaccggagt gtggtgggag ttcgagacac
     8341 tctgcgggcg atcccgcaga acaccgctaa ctgcgcactt atcccgatca cggctgatcg
     8401 ggtagacgcg gtactggcag agggcctgca gcatcacctg ttcctgacca gggttctaac
     8461 tggttcaggt acgccggtcg gaaagggcta gacatgttgc ttattgtctt gacagtagtc
     8521 tgcatcgggg cactgaccgc ggttctggcg atattcctgt tcgtcattgg cgtgctgctc
     8581 aaccggattg cggacaacct tgatgactgc ttgggcaacg tgaagacgat cgcccagcag
     8641 gcggagacga ttattcctgg cgtcgagcac atcaaccgca ccggtggagt tgtcgcaggc
     8701 gcgcttccac tgctgtacgg gggtgccgag aagatcgcga gcaagctggc tccaccagtg
     8761 ccggctccgg tcaacgggca caccaacgtt ccagcgtccg gtcggcgtcg ttctcgtctg
     8821 atggacacgg ttggtttccg cagcggtcgt tcgcactaga gcggctctcc tctagccggt
     8881 agcagtttga cggatagtaa acaaaatatc gggcggcgac tacgttggtc gtagtcgccg
     8941 cccgatattt tgttctggag agggaagccg ggcgagctat cgagggccct cctcgcgttg
     9001 ggttggcgac agtgggcccg tgagctcgga ctcgtagttg ccgatccaat ggccctccca
     9061 ggccttgtcg tacttcactt cgttgcagtg cgggttgtag atggcggcga gctcctgagt
     9121 gatcatctcg cggtgggacc gtgcccagcc gtcgacctcg taggtgcaga tatgtagctt
     9181 ccaccgcgag ccggcacgtg cgatccagca gttcgcccgc ggatgtttga acggaaaccc
     9241 ggcctccgcc atgttgtcct cgtgaccgac atagatgacc gcgtagcggt cgggcttagt
     9301 ttcggcatcc ggcttgtaca tgatcgcaaa aaccgctggt cgcttcggcg ccgtccaacc
     9361 accgaggatc cgtggcccct cgaaggaata gccagcgagg gatccgaggc gaatcatgtc
     9421 cagacctgtg tgatcattag agctgtcctc atgtcaaggt gacgtcgtgc gcgtgctgtt
     9481 cagtgtataa gacgacgttc acatgtcggc atctgcgtcg tcgtcatctt cgctgaccgc
     9541 ttcaactctg acgatcgggt agacgggcag tcccgctttc tgcaccgcgt cagcgaaatg
     9601 ctgtttgccc ttgttgatgg cctcctcgcg cccgtcggca aaaacgacga cctgcgcgcc
     9661 gtagcggttt gtgccgatac cggttgcgat gccatcaagc ggtgcgaccg catcagccag
     9721 ctcgacgacc tcttcgatct tcatgatgcg gtcgccctcg gcctcgatgc cgacgctcca
     9781 tctcatcaac atagcttcag cctccctagc cgagcttcgg aagcagtgtg gcgagttctt
     9841 cgaggctgct gaggtcgtgg ccggacaaca acacgtcgat gtgtggctca gctgccagca
     9901 ttccgaccgt cgtgggttgg tagtctgcgt tgttgccctt gtggggattc atccacacga
     9961 tgttgtgaca caaccgcgac agtcgctcca tcgaatcaga aagcagctca gggtcaccgc
    10021 gatcgagccc atcagagcag attacgacca ccccaccgcg gcacatgccc ctacgccccc
    10081 atgtccggac gaatttgtcg attgagtcgc cgatccgggt gccgccttcc cagtcgacta
    10141 ccagctccga ggcacgggcg agcgcttcgt ccggtttacg tgtctgcagc ggcttggtta
    10201 cctgggtaag gcgagtgccg aagcagaaca cttcaacctt ctgggaggcg cgtttggcgg
    10261 aataggcgaa ttgaagcaga gcgcgagagt aatcggacat ggatccggag acgtcgagaa
    10321 tgagaatcag cgggcgaagc cgcacgcgac gccggcgcca gtacagctcg accatctctc
    10381 cgttcgtccg catcgattca cggatcgtcc gccgcatgtc cggcttccgc ccgtcggagg
    10441 aggtccgggt gcgacgggtg cgccgtttgg gtggggtgaa cttgatgcgc gccatgatac
    10501 gtcgaatcgc cgcgagctcc tcgtcggagc attcgccgaa ggaacggtgc ttgagggtct
    10561 cgacgtttga ggccatcagg ccgagcagtg tttcctcttc ctgctccttg cccgatggct
    10621 cggcggctgg gacgtcgaaa gcggcctcag cttcggcggc agcctgcgcc ttaatcttca
    10681 gcatcttttg gaccgggctg tcagaggcca ggaaaaatgc cctgaacacc tcatcgtaaa
    10741 ccggtaggtc ttcacgacga acgatcatgg tggttcgtcc ggcccaatac agatcgataa
    10801 gatccgtcgg atccagcgga gccattgcag cgcaataagt caggatgtca cccgatccaa
    10861 cagacaaccc tttggagcgc agcgcccgac cgaattcaac aagtacagtg acgaagccgt
    10921 tgtggttgcg tgccatgggt ttcagcagga tccgtgtgtt gtcttatgca ttggacgtca
    10981 cttcgctgag gttatctcgt acgagctcca gatcgtcacg atctttgatg atcgagccga
    11041 gagtggcatc ggcgttactg acgcttaaag agctttcgcc caggaacgac agggtgcgag
    11101 cccagtcaat ggtctctgcg acgcctggtg gcttggccag atccatttcg cggagcttgt
    11161 tgaccgcgcc cactacctta cgggccagtt cttgggacac ctcaggcgct tgaacagtga
    11221 cgatgtcgac ctcgcggtcg ggatccgggt agccgatcca gtggtacatg cagcgtcgtt
    11281 tcaacgcgtc gtgcagatcc cgggtgcggt tggaggtcag gatcaccaga ggtggattct
    11341 ccgccttgat cgtacctact tccggaatgc tgatctggaa gtcagacagc acctccagaa
    11401 ggaatgcctc gaattcgtca tcggcccggt cgacctcgtc gatcaagagc acggcctggt
    11461 cgccggcctg aatggcttgc atcagtggac gctcgaggag gaaccgcgga ccgaatagct
    11521 tttcgacagc ttcttcgcca gtgacgtcgc gatccgacaa tgcgcggata tagaggagct
    11581 ggcgggcgta gtcccactca tagagggctt ggttggtgtc gatgccctcg tagcactgca
    11641 gccggatcag tttacgaccg aataccgagg acagtacctt ggcaagctcg gtcttgccga
    11701 caccaacctc gccttcaagg aggatggggc gttgaaggga catcgccacg aacaccgccg
    11761 tcgccaagcc ccggtccgcc aggtaatcgc cccggcgcaa cgtttcggta agttctttga
    11821 cggtagtcgg atagttcatc gagcggtctc cttgacaacg ctggcggccg ctgagcggcg
    11881 agatcgagca gttagtggtg ggggcgtccg cagcagtact ggatctgtcg gcacaggcga
    11941 gccactccgg ggatctgacc tccacaggtg agatccccgc ggtggcgtcc tagttgagcg
    12001 tctcgtaccc gcgcctgtcg tactgcatgg cgctcacata ggatgacgtt ctcaatgccc
    12061 ccgtggtcgt gggcgcagcg tcctgcccca cgcggtacga agtggtgcgg ttcgattcgg
    12121 tggtgttctc aacgggtttg tcgctggcct gtggcttctt acgtccgaac atgaacgtca
    12181 tcctcccttt gctgtcttcc gccgctcgaa cgagctagcg ttgctactct ttctggtcag
    12241 acgagccgaa gacgagatct cgcacgctgc cgctctcgga gttcagcttg ccttcacgct
    12301 cgagcttggt cttccacgcg gcacgaaggt tgttacccac cgactgcgag ggtttgtcgc
    12361 tttcgtcctc tagaccgtgg aagccgacgg tttccatgtt cctgcacgag gtcgtgttac
    12421 cacatgcctc gtctagatcg gcgctggttt ggccctgtgc cttccagatc ccacgcagcg
    12481 cggagagcgc ttgttggccc tcgccggtca acttatcggt cgcatttggg ttctcgttct
    12541 cttcgctcat gtcttcgcac cctctccgat gcaactggtc aggggattga tggagacatt
    12601 ttccatcgat tcgtctgggc ggttcgatga caaactagga tcgctttgcc tcctcgaacc
    12661 gacggcctac ctcttcccag ttcactacgt tccaaaaagc ctcgatgtaa tcggcgcgcg
    12721 caccctggta gcggaggtag taggcgtgtt cccacaggtc gaggccgagg atgggagtct
    12781 cttccgcggt cagcggggaa tcctcattga gcaggctgta gacgaccaat cggttgcgca
    12841 cccgtaccag ccaggcccag ccactgccga ggtgggagtt tgcgacaccc gtgaaccggt
    12901 ctcgaaatgc cgtaaaggaa ccgaactcct cggtgattgc ctcgccgagg cggcctgtgg
    12961 gtttccctcc accatctcta ctcaagatcg tccagaaaag agaatggttc gcgtggccgc
    13021 caccgtagtt acgcaccgcg ttgcgggtct cttccgacac cttgccgatg tcccacagca
    13081 ggtcatcgac gggttgttca cttactgagc gtagagtcgg gctggtgtca acggctgcgt
    13141 tgagctggtc gacataccga cgatggtgct gggtgtggtg caactccatg gtgcgagcgt
    13201 caaagtaagg ctcaagcgcg tcgtatccat acggcaggtc gggaaggctg taggcgctca
    13261 taggcccctt cctgagctgg gactctcgta gtccatggtc gcccatcgta cacggaaaat
    13321 cagcacgggc gcgctgagag cgaccctcga aggtcgccaa tgacgatcac tgacgatccg
    13381 gcgtagcgat cacttcccaa cttagcgagg accgcgggct ccccgttccg cagtgtctct
    13441 gcagaacgtt cgcatgccga ccacgatcgg ttcggtcatc tggcggcttg gtgcgtgctt
    13501 gcctccggcc agcggtcgga gggcgccgcg cggccggttt cctgagggca gtgcccggca
    13561 aatggcggta tccctgcggc gttcgggcta atgcaccgcc cctcgtcgcc gggaacgcac
    13621 ctgtgggcgc cgtggagcgc ccggaactct caggtcaaga ccggctggca acccatggtc
    13681 gtaatctccg ctacggcgac ggccggttac caggaccaag ccgccacgcc cggcggtccg
    13741 taccaggtgc gtcccggcag tacacctccc ggtccggcgt gcgctgcgct gtgtgcgccg
    13801 gcatgcgcgg actggctgaa ggtggtggtc agcgatggcc cactgcctcc cgccgacact
    13861 gactcgagaa aggtgcgttg gtgatttccc gcacaccacg cttcgtccgc tggcgcctgt
    13921 gtgccgtcgc tgcagcggta ccgattgcga tgatcgcacc ctggccggcg caggccgggc
    13981 ccgaaccggt tgatgccctg gacccggtca acgtttcggc tccgggaagc agcgcgccgc
    14041 tgactcgcac catgatgggg caagacgacg acgtcgcagt cggcgaccca gcgccggatc
    14101 ccaaccctga cccggctcgc cggggccgaa acaacgagcg acaccgcgcc ttaaaagagg
    14161 cgccagacgg tggcggcggc aaaaacccca acccgaactg cacgctgatc gtcccggatg
    14221 cgccattcac cgcgcagggt ctggccacgc cgtaccagct gttcgcgacg aaccgtcgcc
    14281 aaggccaatg ccgtgaggcc aacgacaacc agtcggcgtt cgtcgaagcc acgatcatca
    14341 acccggcaac gggcgccttg tcgatctacc gaccgctggt catcgaccgc ggtacccgac
    14401 ccggggcgcc ccccgtcatg ccgaagttac ccgcaggttc ggtggttggg ctgtggttcg
    14461 gcttccaagg caccacattg actctgcgtg gtgcaaccgc cggatgcgtc aatggattgc
    14521 ccggctcgcc gttcggacaa ttcgcctact gcggtgcacc cgagttcttc cgcgcagcta
    14581 acgcggcgat ccgcgccggc aagctgaagg tgccaccggt cggcacggcc cgggacggcc
    14641 agcc
//
LOCUS       DASVXZ010000954         1737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1322531, whole genome shotgun sequence.
ACCESSION   DASVXZ010000954 DASVXZ010000000
VERSION     DASVXZ010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1322531"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1080)
                     /gene="dnaJ"
                     /locus_tag="VF788_20090"
     CDS             complement(<1..1080)
                     /gene="dnaJ"
                     /locus_tag="VF788_20090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005158742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEX8936430.1"
                     /translation="MARDYYAILGVPRDASADQIKRAYRKLARELHPDVNPDAAAQQR
                     FQDVTAAYEVLTDPQKRQVVDLGGDPLEAGAGRGPGGDPFGGFGFGDIMDAFFGSAGG
                     PGGRRGPRSRVQGGSDALIRLQLTLEECATGASRELTVDTAVLCGQCNGSGCAPGTRP
                     QTCDTCGGAGEVQNVQRTFLGQVMTSRPCPVCRGIGEVIPEPCRQCGGDGRIRARRNV
                     TAKVPPGVGDGMRVRLAGQGEVGPGGGPAGDLYVEVQEVPHETFTRDDADLHCTVRVP
                     MTAAALGTTVMLETLDGTEEVRVEAGTQCATVLTLRGRGMPRLRSTGRAEGRGDLFVH
                     LDVVTPTRLDPQQIELLRELAVLRGE"
     gene            complement(1154..>1737)
                     /locus_tag="VF788_20095"
     CDS             complement(1154..>1737)
                     /locus_tag="VF788_20095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEX8936431.1"
                     /translation="MLVLITDSGRVDQRLLDLGDVITEDQVAQLRTLLNQALSGRRLA
                     DASAAVADLPDQVPIELRDAMTRASTVLIETLVEHPEERLLLGGTANLTRSATDFPGS
                     LRQVLEALEEQVVVLKLLAAARDPATITVRIGEENEAEEMRSTSLVSIGYASHGTVLG
                     GMGVVGPTRMDYPGTIAAVRAVARYVGEILTTR"
BASE COUNT          274 a          643 c          542 g          278 t
ORIGIN      
        1 ctcaccacgc aggacggcaa gctcgcgcaa caactcgatc tgctggggat ccagccgcgt
       61 cggggtgacg acatcgaggt ggacaaacag gtcaccccgc ccctcggccc ggcccgtgct
      121 acgcagccgt ggcatcccgc gtccccgtaa ggtcagcacg gtcgcgcact gggtgcccgc
      181 ttcgacgcgc acctcctcgg tgccatcaag ggtctccagc atgacggtcg tgccgagtgc
      241 agcggccgtc atcgggaccc gcacggtgca gtggaggtcg gcatcgtcgc gagtgaacgt
      301 ctcgtgcggc acctcctgca cctcaacgta gagatcaccc gctggaccgc cgcccggccc
      361 cacctcaccc tggccggcca gccgcacccg cattccgtcg cccactccgg gaggaacctt
      421 cgcggtgaca ttgcgacgag cccggatccg gccatcccca ccgcattggc ggcagggttc
      481 cgggatgacc tcgccgatac cccggcacac cgggcacggt cgcgacgtca tgacctgacc
      541 gaggaaggtc cgctgcacgt tctgtacctc gccggcgccg ccacaggtgt cgcatgtctg
      601 tggccgagtg ccgggcgcgc accctgagcc gttgcattgg ccgcacaaca ccgcggtgtc
      661 cacggtgagt tcccgcgatg ccccggtggc gcactcttcg agggtgagct gaagccggat
      721 cagcgcgtca gagccgccct gcactcggct gcgcggcccc cggcgaccac cagggcctcc
      781 tgcggagccg aagaaggcat ccatgatgtc gccgaagccg aacccgccga agggatcccc
      841 tcccggaccg cgccccgcac cagcctccag cgggtccccc ccgaggtcga cgacctgacg
      901 cttctgcggg tcagtcagca cctcgtaggc cgcggtgaca tcctggaacc gctgctgtgc
      961 tgctgcgtcg ggattgacat cgggatgtag ttcgcgcgcc agctttcggt aggcgcgctt
     1021 gatttgatcc gcgctggcgt cccggggcac acccaggatt gcgtagtagt ccctggccac
     1081 gctggcgtcc tcctgccgca gccctacgcc gcggttctct tgtagatctc gctgtgcata
     1141 tcggccgacc ctctcagcgg gtcgtcagga tctcccccac gtatcgtgct accgcgcgca
     1201 ccgcagcgat ggtgcccggg tagtccatcc tcgtcggtcc caccacgccc atgcccccga
     1261 gcacggtgcc gtgcgaggcg tagccgatcg agaccaacga ggtactgcgc atttcctcgg
     1321 cctcgttctc ctcaccgatc cgcaccgtga tggtggccgg atcccgggcg gcggccagca
     1381 acttgagcac caccacctgc tcctccaacg cctcgagcac ctgacgtagt gaacccggaa
     1441 agtcggtggc gctgcgggtg aggttagcgg tgccccctag tagcaaccgc tcctcgggat
     1501 gctccaccag cgtctcgatc aacaccgtcg aagcccgggt catcgcatcc cggagctcga
     1561 tgggaacttg gtcaggcaga tcggccaccg ccgcggaggc atccgccagc cggcgcccgg
     1621 aaagcgcctg gttgagcagc gttcgcagct gtgccacctg gtcctcggtg atgacatcgc
     1681 ccagatccag taagcgctgg tccacccggc ccgagtcggt gatgaggacg agcatca
//
LOCUS       DASVXZ010000955         3667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1413056, whole genome shotgun sequence.
ACCESSION   DASVXZ010000955 DASVXZ010000000
VERSION     DASVXZ010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1413056"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..1078
                     /locus_tag="VF788_20100"
     CDS             32..1078
                     /locus_tag="VF788_20100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX8936432.1"
                     /translation="MADKHVVRFEPVGIEIEVDEDQTILRAAFEQGVMLMHGCKEGQC
                     ASCKSFVLDGDDIELDRYSTFALPDYEKEEGFTLLCRAHAYEDLTIELLNFDEDMIRS
                     GLPIQQAVAQVVSNEAVTHDMRHLVLRLVEPREIKFFPGQYLDFAVPGTGEVRSFSMA
                     NTSCREDGRLEFVIKIYPDGLFSHFLDTKVKAGDRLDVTGPYGVFTLREGHDTDLLFI
                     GGGAGMAPILSLLRSMAERGITRRATYYYGARRRRDLCFEKELRALEDSLPGFRYIPA
                     LSEPAEDDGWDGEIGLITDVVARHESGLKGADGYVCGPPPMVDAAIATLTRLGVPEGR
                     IYYDKFTTTGEPGQ"
     gene            1103..2281
                     /locus_tag="VF788_20105"
     CDS             1103..2281
                     /locus_tag="VF788_20105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020647315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toluene hydroxylase"
                     /protein_id="HEX8936433.1"
                     /translation="MTTAQKRSVPKVNFTDAEAGAKEFPDSNARRYNYFVPQKRKQTH
                     YEDVTVEVQPDPRHYLSQGWIYGFANGEVGYPLTWTKLKAWGQDLPEPERGPGTGGGG
                     KGLDWPAHGWHEFRDPNEEWEMTLYRYGANVVRQVNQNIEVARQAKAFEQWNPNWVHF
                     VEHHVGAWMHIEHILGLYVFSHANRSGPTNMHNTAIAVNGMHKIRFAQDLALYNLTLS
                     EEIEGFDGAAHLEAWNSDPAWQGARKLVEALTAIEDDWGESIFAANVVFEPLLGELFR
                     SNLVQQAAAGNGDFVTPTIVGAGEYDYARRDLRMTIAMFEPRVSDKEFAEHNKEIMQG
                     WLSKWVPQALEAARTLQPLWSQPDFKPPRFEDGLDRAKNRFSGIVSDLGLQVPKELGQ
                     "
     gene            2278..2646
                     /locus_tag="VF788_20110"
     CDS             2278..2646
                     /locus_tag="VF788_20110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020647316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmoB/DmpM family protein"
                     /protein_id="HEX8936434.1"
                     /translation="MTTSKTSESPFKANNTASNMCGFTLMNNQVGALIAQVMATKDNV
                     TVTPLPSMIRVDAQNRMDVVYAEIDDAAGEEEGWFDSAEFEENMSTHYGRMIHEDDRT
                     IMFANPEDAAEYIDFDLKAR"
     gene            2650..>3667
                     /locus_tag="VF788_20115"
     CDS             2650..>3667
                     /locus_tag="VF788_20115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009154218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX8936435.1"
                     /translation="MYEKDGEKYFVVDTHSHFWDASRENWVPDAENYAKGWIDCFYGY
                     HQLGPPETHWDYEHYLKVSEEDFMRDIFDEGHVDVAIFQSTYLTEWYKTGFNTAAQNH
                     VLTEKYPDKLITNGRFDPREGDAGLKQLEEDAERFNLRGVKLYTAEWYQGSRGWKLTD
                     PEAYRYLERCQELGIKNVHVHKGPTIWPLDKDAFDAADVDGAATDFPELNFIIEHANI
                     PRIDDFCYMAVQEPNVYAGCSVVIGALMYARPKFFNRVMGELLFWVGEDRMTFGADYN
                     IWTPKWQVEGLVDWQMPDDEAFSDYPRPTVATKKKILGLNAAKLYDIEVPAECQLPTA
                     ADEDM"
BASE COUNT          743 a         1141 c         1188 g          595 t
ORIGIN      
        1 cgcggcctcg ggagttctcc gcgaggtagc catggctgac aagcacgtcg tccggttcga
       61 gccggtcggc atcgagatcg aggtcgatga ggaccagacg atcttgcgtg ccgccttcga
      121 gcaaggcgtc atgctcatgc acggatgcaa ggagggccag tgcgcctcct gcaagtcgtt
      181 cgtgctcgac ggtgatgaca tcgagctcga tcggtactcg accttcgcgc tgcccgacta
      241 cgagaaggag gaagggttca ccctgctgtg ccgggcgcac gcctatgagg acctgacgat
      301 cgaactgctg aacttcgacg aggacatgat ccgctcgggg ttgccgatcc agcaggcggt
      361 cgctcaggtc gtctccaacg aggcggtgac ccacgacatg cggcacctgg tgctccgcct
      421 cgtcgagcca cgggagatca agttcttccc gggccagtac ctggacttcg ctgttccagg
      481 taccggggag gtccgctcgt tctccatggc gaacacgtcg tgccgggagg acggccggct
      541 cgagttcgtg atcaaaatct atccggacgg cctgttctcc cactttctgg acaccaaggt
      601 gaaggcgggc gaccggctgg acgtgaccgg accgtatgga gtgttcacgc tgcgcgaggg
      661 ccacgacacg gacctgttgt tcatcggcgg cggcgccggg atggcgccca tcctttcgct
      721 gctgcggtcg atggccgagc gggggatcac ccggcgagcc acctactact acggcgcgcg
      781 ccggcggcgc gatctgtgtt tcgagaagga gctgcgggcg ctggaggact cattgcccgg
      841 gttccgctac atcccggcgc tgtccgagcc ggccgaagac gacggctggg acggcgagat
      901 cgggcttatc acggatgtgg tggcccggca cgaatcgggt ttgaaaggcg cggacggcta
      961 tgtctgcgga ccccctccca tggtggacgc ggccatcgcc acgctgaccc gcctcggggt
     1021 gcccgaagga cgcatctact acgacaagtt caccacgacc ggtgaacccg gccagtgacc
     1081 aacggccttc gaggaggcgc tgatgacaac tgcgcagaaa cgcagcgtac cgaaagtcaa
     1141 tttcaccgat gctgaggccg gtgcgaagga attcccggac tctaacgcgc gccgatacaa
     1201 ctatttcgtc ccgcagaagc gcaagcagac ccactacgag gacgtaaccg tcgaggtcca
     1261 gccggatccc cggcactacc tcagccaggg ctggatctac ggcttcgcca acggcgaagt
     1321 tggctacccg ttgacctgga cgaagctcaa ggcctgggga caggacctgc ccgaacccga
     1381 gcggggtccc ggcaccggtg gcggcggcaa gggcctcgac tggccggcac acggctggca
     1441 cgagttccgc gaccccaacg aagaatggga gatgacgctc taccgttacg gcgccaacgt
     1501 cgtacgccag gtcaatcaga acattgaggt ggcccgccag gcgaaggcgt tcgagcagtg
     1561 gaacccgaac tgggtgcatt tcgtggagca ccacgtcgga gcctggatgc acatcgagca
     1621 catcctcggg ctctacgtgt tcagccacgc caaccggtcc ggcccgacga acatgcacaa
     1681 cacggcgatc gccgtgaacg gcatgcacaa gattcgcttc gctcaggacc tcgcgctgta
     1741 caacctcacc ctcagcgagg agatcgaggg gttcgacggc gcggcgcatc tcgaggcatg
     1801 gaactccgac cctgcctggc agggagcccg caagctcgtc gaggcgctga ccgccatcga
     1861 agacgactgg ggggagtcga ttttcgccgc gaacgtggta ttcgaaccgc tgctgggcga
     1921 gctgttccgg agcaacctgg tgcagcaggc ggcggccggc aacggagact tcgtgacccc
     1981 gaccatcgtg ggtgccggtg agtacgacta cgcgcggcgc gacctgcgca tgacgatcgc
     2041 gatgttcgag ccacgggtca gcgacaagga gttcgccgag cacaacaagg agatcatgca
     2101 gggctggctg tccaagtggg tgccgcaggc gctggaggcc gcgcgaacgc tgcagccact
     2161 gtggtcgcag cccgacttca agccgccccg gttcgaggac ggtctcgacc gcgcgaagaa
     2221 ccgcttcagc gggatcgtgt ctgaccttgg tctgcaagta ccgaaggagc tgggccagtg
     2281 accacgtcca agacttccga gagcccgttc aaggccaaca acaccgcctc gaacatgtgc
     2341 ggtttcacgc tgatgaataa ccaggtcggc gcgttgatcg cgcaggtgat ggcgaccaag
     2401 gacaacgtca cggtgacacc actgccctcg atgatccgag tcgatgcgca gaaccggatg
     2461 gatgtggtgt acgccgagat cgacgatgcc gccggtgagg aagaaggctg gttcgactcc
     2521 gccgagtttg aggagaacat gtcgacgcac tacggtcgca tgatccacga ggacgaccgg
     2581 acgatcatgt tcgccaatcc cgaggacgcg gctgagtaca tcgacttcga cctgaaggcg
     2641 agatagccga tgtatgagaa ggatggcgag aagtatttcg ttgtcgacac tcactcacac
     2701 ttctgggatg ccagccggga gaactgggta ccggacgccg agaactacgc taagggctgg
     2761 atcgactgct tctacggcta ccaccagctg ggcccaccgg agacgcactg ggactacgag
     2821 cactacctga aggtctccga agaggacttc atgcgcgaca tcttcgacga gggccacgtc
     2881 gatgtcgcga tcttccagtc cacgtacctg accgagtggt acaagaccgg cttcaacacc
     2941 gcggcgcaga accatgtgct gaccgagaaa tacccggaca aactgatcac caacggtcgc
     3001 ttcgacccgc gcgagggtga cgccgggctc aagcagctcg aagaggacgc cgagcggttc
     3061 aacctcaggg gcgtgaagct ctacacggca gagtggtacc agggctcccg cggctggaag
     3121 ctcaccgacc cggaggccta ccggtacctg gagcgctgcc aggaactcgg gatcaagaac
     3181 gtccatgtcc acaagggccc gacgatctgg ccactggaca aggacgcgtt cgacgccgcc
     3241 gacgtcgacg gggcggcgac cgacttcccg gagctcaact tcatcatcga gcacgcgaac
     3301 attccgcgca tcgacgactt ctgctacatg gcagtgcagg agcccaacgt ctacgccggc
     3361 tgctcggtgg tgatcggcgc cctgatgtac gcccgaccga agttcttcaa cagggtgatg
     3421 ggcgagctgc tgttctgggt cggtgaggac cggatgactt tcggtgccga ctacaacatc
     3481 tggacgccga agtggcaggt cgagggcctc gtcgactggc agatgcccga tgatgaggct
     3541 ttctccgatt acccccggcc aaccgtcgcg accaagaaga agatcctcgg cctcaacgct
     3601 gcgaagcttt acgacatcga ggtcccagcc gagtgccagc tgcccaccgc ggcggatgag
     3661 gacatgg
//
LOCUS       DASVXZ010000956         1764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1413110, whole genome shotgun sequence.
ACCESSION   DASVXZ010000956 DASVXZ010000000
VERSION     DASVXZ010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1413110"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..904
                     /locus_tag="VF788_20120"
     CDS             131..904
                     /locus_tag="VF788_20120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX8936436.1"
                     /translation="MATTEQLRLDLVLGYLFERSIMTGLLVTIEVTVVAMLVGVVLGT
                     VLAIMRLSANPLLRGVAGGYVWLFRGTPILVQLLVWFFLGTALPQISLGVPFGPEFVS
                     VASNTLITQFVAAVLGLGLNEAAYMAEIVRAGISAVDRGQTEAAEALGMSPMLTYRRI
                     VLPQAARVIVPPTANEVISMLKLTSLCLVIGLPELLTTAQLIYGRNFQQIPLLIVASV
                     WYIVLTTILTLIQGRIERRMSRGVLGAPVRRNRFAIGGR"
     gene            904..1713
                     /locus_tag="VF788_20125"
     CDS             904..1713
                     /locus_tag="VF788_20125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009080625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEX8936437.1"
                     /translation="MSTAYSQSVSDRVSPGSVPMVEAQGVRKRFGDNEVLKGIDLTVQ
                     QGEVVSFLGPSGSGKSTFLRCINHLERIDGGEISVNGHLVGYRRHNGKKYELKPKEVA
                     AARRDVGMVFQRFNLFPHLTAIENVMEAPVFVKGVPRSEAKAAAQGLLARVGLEDKPA
                     AYPAQLSGGQQQRVAIARALAMKPKLMLFDEPTSALDPELVGEVLDVMKNLAVEGMTM
                     IVVTHEIGFAREVCDRVAFMDGGVIVEEGPPDQVLVNPQHGRTQSFLSKVL"
BASE COUNT          277 a          620 c          572 g          295 t
ORIGIN      
        1 catgaccact gaagccgtcg ggtctgcagc gacgggtcac gccgaagagc cgatcgtccg
       61 attgcgccat ccggggcgct gggtcgcagg tgccgcgctg gcggtcctcg ccgcgatgtt
      121 cgtcaacttc gtggcgacca ccgagcagct gaggctcgac ctcgtcctgg ggtacctctt
      181 cgagcggtcc atcatgacgg gcctgctcgt caccatcgag gtcaccgtcg tggccatgtt
      241 ggtgggcgtg gtgctcggca ccgtgctggc catcatgcgg ctgtcggcca accccctgct
      301 gcgcggcgtc gccggtggct acgtctggct gttccggggc acccctatcc tcgtccaact
      361 gctcgtctgg ttcttcctcg gcaccgcgct gccccagatc agcctgggcg tcccgttcgg
      421 cccggagttc gtcagcgtcg cgagcaacac gctcatcacc cagttcgtgg cggcggtcct
      481 cgggctggga ctgaacgagg cggcctacat ggccgagatc gtccgagccg gcatcagcgc
      541 ggtcgaccgc ggtcagaccg aggcagccga agcgctgggg atgagcccga tgctgacgta
      601 ccggcgcatc gtcctgcccc aggcggcccg ggtgatcgtg cccccgaccg ccaacgaggt
      661 catctcgatg ctgaagctga cgtccctgtg cctggtcatc ggcctgcccg agctgctgac
      721 caccgctcag ctgatctatg gccgcaactt ccagcagatc ccgctgctca tcgtggccag
      781 cgtctggtac atcgtgctga cgacgatcct caccctcatc cagggccgca tcgagcggcg
      841 gatgtcgcgt ggcgtgctgg gcgctcctgt ccgccgcaac cggttcgcga tcggaggccg
      901 ctgatgtcca ccgcctactc gcagtcggtg agcgaccggg tgtcaccggg ctccgtgccg
      961 atggtggagg cgcagggtgt tcggaagcgg ttcggagaca acgaggtgct caagggcatc
     1021 gacctcacgg tccagcaggg cgaggtcgtc tccttcctcg gcccgtccgg atcgggcaag
     1081 agcaccttcc tgcggtgcat caaccacctc gagcggatcg acggcggcga gatcagcgtc
     1141 aacggccacc tcgtcgggta ccgccggcac aacggcaaga agtacgagct caagcccaag
     1201 gaggtggccg ccgcccggcg cgacgtcggg atggtcttcc aacgcttcaa cctcttccca
     1261 cacctgacgg ccatcgagaa cgtgatggag gcgcccgtct tcgtcaaggg cgtcccacgg
     1321 tctgaggcca aggccgccgc ccagggtctg ctggcgcggg tcggcctgga agacaagcct
     1381 gccgcctacc ccgcccagct ctctggcggc cagcagcaac gggtcgcgat cgcgcgcgct
     1441 ctggcgatga aacccaagct catgctcttc gacgagccca cgtccgcgct cgaccccgaa
     1501 ctggtgggcg aagtgctcga cgtcatgaag aacctcgccg tcgagggcat gacgatgatc
     1561 gtggtcaccc acgagatcgg ctttgcccgg gaggtctgcg accgcgtcgc cttcatggac
     1621 ggaggcgtca tcgtcgagga gggcccgccg gaccaggtgc tcgtcaaccc gcagcacggc
     1681 agaacccagt cgttcctctc gaaagtactg tgacatgcca gccaacgcac cgatcgcacc
     1741 catcggcccc gtcgacgcaa cccg
//
LOCUS       DASVXZ010000957         1987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1060608, whole genome shotgun sequence.
ACCESSION   DASVXZ010000957 DASVXZ010000000
VERSION     DASVXZ010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060608"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(392..586)
                     /locus_tag="VF788_20130"
     CDS             complement(392..586)
                     /locus_tag="VF788_20130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936438.1"
                     /translation="MTVMADITRPGNLNPHRRHRTYPRVVKRGRHNSYRVKKPGDTGT
                     RHDGPATINLANHGTNRPAA"
     gene            complement(606..1862)
                     /locus_tag="VF788_20135"
     CDS             complement(606..1862)
                     /locus_tag="VF788_20135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEX8936439.1"
                     /translation="MVWDVEVAAGSRLTDLVSLGVLASSVSRDAVDEAIRVTGRGARR
                     SDGKLPPHVMVYFTMALALFAEDDYEEVATRLTETLTAWGCWDDAWSVPTSGGITQAR
                     QRLGDEPLRQLFDRVAQPVAGSLTRGAFLGNWRLMALDGFEWDVPDTRANAAEFGYAG
                     SGEGRSAFPKVRVVSVSECGSHAMVDAEIGPVSGEGCGEQSLAARLYGRLSQEWLLIA
                     DRNFYSWSGWQAAAASGAQLLWRVKAGLTLPLLRWLPDGSYLSVLVNPRIRGKARARL
                     LDAARAGCELGADEAVMVRVVEYDVPDRVGDGTGELIALITTIIDPTTAPAAELAQAY
                     HQRWEHETGNDQIKTHLRGPGKVLRSKSPDMVRAEIYGYLLTHHAISALICQAATEAD
                     IDPDRVKFLRTVRIVRRRVADPAFSP"
BASE COUNT          388 a          689 c          577 g          333 t
ORIGIN      
        1 catcagcaaa cgtcaacgca tcgcatgtga caaacgtgag cgcccaagta cgatcgaccc
       61 accccaggag gcagtcacac cagcctcaac aacgagtaat ataatgccct ccaaaatacc
      121 gttcgccaat cccgctgaag ggtgtaaata gaatacagcc gatcacgcta agtgcttacc
      181 cagtcgctaa aataacccat cttggcacaa aaacaccacc gtcggagtat cacagggtag
      241 gtgcacttgc cgtggatgag ccccgtacgt accgacattt cctccgctac cggcgcagat
      301 gctacgtcgt cctccgactc aagatcgaca aaacgaccac ccgccaggag cggtacgcgg
      361 tcttggggca atgccactta gcatgagttg atcatgctgc gggtctgttt gttccgtggt
      421 tggcgaggtt gatcgtggct gggccgtcgt ggcgggttcc ggtgtcgccg ggttttttga
      481 ctcggtagga gttgtggcgg ccgcgtttga ccacccgcgg gtaggtgcgg tggcgtcggt
      541 gggggttgag gttgccaggt cgggtgatgt cggccatgac tgtcaacaaa gatcgtttgt
      601 gctggtcagg gggaaaaggc cgggtcggcg acccggcggc ggacgatacg caccgtgcgc
      661 aggaacttga cccggtcggg gtcgatgtcg gcctcggtgg ccgcctggca gatcagggcg
      721 ctgatcgcgt ggtgggtcag caggtatccg tagatctcgg cgcgcaccat gtccgggctc
      781 ttggaccgca gcaccttgcc cggcccgcgt aggtgggtct tgatctggtc gttgccggtc
      841 tcgtgttccc agcgttggtg gtaggcctgg gccagctcgg ccgcaggggc ggtggtgggg
      901 tcgataatgg tggtgatcaa ggcgatcagc tcacccgtgc cgtcgccgac acggtcaggc
      961 acgtcgtact cgacaacccg caccatcaca gcctcatcgg cgccaagctc gcacccggcg
     1021 cgggcggcat ccagcagccg ggctcgggct ttacctcgaa tccgcggatt gaccagcacg
     1081 gacaaatagg agccgtcggg tagccaccgc agcagcggca gcgtcaggcc ggccttgacc
     1141 cgccacagca gctgcgcgcc cgacgccgcc gcggcctgcc agcccgacca gctgtagaaa
     1201 ttacggtcag cgatcagcag ccactcctgg gacagtcgcc catacagtcg cgcggctaag
     1261 gactgctccc cacagccctc acccgatacc gggccgatct cggcgtccac catcgcatgc
     1321 gagccgcact cgctgaccga caccacccgc accttcggaa acgccgagcg gccctcaccc
     1381 gatccggcgt agccgaactc ggcggcgttg gccctcgtat ccggcacatc ccactcgaac
     1441 ccatcgagag ccatcaaccg ccaatttccc aggaaagccc cccgcgtcag cgacccggcc
     1501 accggctggg cgacccggtc gaacagctgc cgcagcggct catcacccaa ccgctggcgg
     1561 gcctgggtga tcccacccga ggtcggcacg ctccaggcgt cgtcccagca gccccacgct
     1621 gtcagcgtct cggttagccg ggttgccacc tcttcatagt catcctcggc gaacagcgcc
     1681 aacgccatcg tgaaatacac catcacatgc ggcggcagct tcccatccga acgccgcgca
     1741 ccacggcccg tcaccctgat cgcctcatcc accgcatccc gcgaaaccga cgaggccaac
     1801 acccccagcg agaccagatc cgtcaaccgg ctaccggccg ccacctcaac atcccacacc
     1861 acaccacaag atcatccctt cgacagcact ccaccgtgga cgacacgccg aacaagatca
     1921 cgccaagcta agtggcattg tgtcatagcc tcataccgca acggctcctc cgttttgatt
     1981 tcactgt
//
LOCUS       DASVXZ010000958         1984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1163407, whole genome shotgun sequence.
ACCESSION   DASVXZ010000958 DASVXZ010000000
VERSION     DASVXZ010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1163407"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            790..1644
                     /locus_tag="VF788_20140"
     CDS             790..1644
                     /locus_tag="VF788_20140"
                     /inference="COORDINATES: protein motif:HMM:NF040183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX8936440.1"
                     /translation="MVSVPTIRRRRLGAALRRLREANGMSLETVADELGWSTSKVSRI
                     ELAKIAVTPADVRALLGVLEALSGEVETLVSLASEDRQLGWWRQYAEVLPPWFAGYLS
                     LESEAARLLAYESEVMPGLLQTEQYAAEIVRHSPYTPLPEEAAKAAQLRRARQVRLIG
                     DDPIDLDVVINEGVLRRAVGGPEVMCGQLTRLIDVTDLPNVALRVLLFDAGAHPGVDG
                     SFTVLEFADTSNPRIVYLDRMTSSEYLDGLRDVAAYRHAHERLRMSALSPTDSREMIS
                     GLLRELMK"
     gene            1641..1895
                     /locus_tag="VF788_20145"
     CDS             1641..1895
                     /locus_tag="VF788_20145"
                     /inference="COORDINATES: protein motif:HMM:NF016070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF397 domain-containing protein"
                     /protein_id="HEX8936441.1"
                     /translation="MINNSALRSGQRATQHWRKSSYSGTAGNCIEVTDLGRGAWGVRD
                     SKDPTGPVLTFTADEWYAFTLTVKCVSTAAAHRDLRTRSD"
BASE COUNT          360 a          558 c          671 g          395 t
ORIGIN      
        1 cgatgaaggc gctgacgacc tggatatgca ggcgcccaag gacactccgg cgtatggggc
       61 gcggagcgtt cagatggtga cggcgggaac gggagggacg cctccccggc ccagcaacat
      121 gcgaaagtga tgctgctgga gcgtcgcctc ctataaccag ggatcctggg aagtgggcta
      181 cgggccgggt ggacgtcgga tgcggcggtt ctgttcgtca agcgccgggg ccgggactcg
      241 gtgttcgtgt gctcaggtgg tgtcagtggc caaatgacgg cgctgcggtg ctggaccgac
      301 gggggagcca cccgctcgca tcggttggcg gccgagggtc tggccgagct ggtcgcggtg
      361 actcgcggga atgaggggta gttgattgtc gtgcctgatc gcgacacatt cttatgcgat
      421 aaatggaaca agaacgatct gtctaacttg ccccgcctgg tcgatcttgg tgcgcagtca
      481 gggatcgcgg aacgggcaag ggcatcgtgt tcatagctca ctggcccgcg agcaaggcga
      541 tgcagcgcgc tcggaatcgg atcagggaat tgaccacccg gcgtcggctg ctgttgccgc
      601 ggatgagcgt tcttgcgtcg gccgagccat gactcagttc tggtggtagt cgtggcgggc
      661 gactagctcg ctgcgatcgc cgtgtacgct gacacggctt gcagagcaat ttgcaccgca
      721 aacggcccag ccacatgtca cccagttgtt cgagtcacgg cgctagttgc tgtggcattg
      781 tctgacgcca tggtgtccgt gcctacgatc cgaaggcgcc gtcttggagc ggcacttcgg
      841 aggcttcgtg aggccaacgg catgagtctg gagaccgtcg cggatgagct tggatggtcg
      901 actagcaaag tcagtcgcat tgagctcgcg aagatcgcgg tcacgcctgc ggacgttcgg
      961 gccctgttgg gggtcttgga ggcgctgtca ggggaagtag agaccctcgt cagcctggcc
     1021 agcgaagacc gccaattggg ttggtggcgg cagtacgccg aggtgttgcc accgtggttt
     1081 gcgggttatc tgtccttgga atccgaagcg gcgcggctgc tagcttacga gtcggaggtc
     1141 atgcccgggc tgctccaaac cgaacaatac gctgccgaaa tcgtccggca ctcgccttac
     1201 acaccgttac ccgaggaagc ggccaaagcg gcgcagttgc gccgtgcccg gcaggtccgg
     1261 ctcatcgggg atgacccgat cgacctggac gtggtaatca acgagggggt tcttcggcgc
     1321 gcggtgggcg gcccggaggt gatgtgtggg cagttaaccc gtttgatcga cgttaccgac
     1381 ctccccaacg tggcgctgcg cgtgcttctc tttgacgcag gcgcccatcc cggtgttgat
     1441 ggatcgttca ctgtgctgga attcgccgac accagcaatc cccggattgt ctatctggac
     1501 cgcatgacga gcagcgagta cctcgacggc ctacgcgacg tagcggcgta ccgccatgca
     1561 catgagcgac tacggatgtc tgcactttct ccaaccgatt cccgtgagat gatcagcgga
     1621 ctattaagag agctgatgaa atgatcaata atagtgcgct caggtctggg caacgagcca
     1681 ctcagcactg gcgcaagagc agctacagtg gcacggccgg gaattgtatt gaggtcaccg
     1741 acctcggccg tggtgcatgg ggggtgcgag actccaagga tccgactggg cccgtgctga
     1801 cattcaccgc ggacgaatgg tatgcattta cattgactgt caaatgtgtg tccacggctg
     1861 cggctcatcg cgacctccgc acgcgtagcg actagcatgt tcttattctc tccagacgtg
     1921 ccgagctttc gtgacaccat tgcgcggaat caccctggtg ctgcacgact tcggcgggcc
     1981 gtgg
//
LOCUS       DASVXZ010000959         2529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1507530, whole genome shotgun sequence.
ACCESSION   DASVXZ010000959 DASVXZ010000000
VERSION     DASVXZ010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1507530"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..967)
                     /locus_tag="VF788_20150"
     CDS             complement(<1..967)
                     /locus_tag="VF788_20150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression protein HypE"
                     /protein_id="HEX8936442.1"
                     /translation="MTATTPQRQGFDEMHILWISEGMSCDGDTVSVTAASQPPIEDVV
                     MGLVPGLPTVHLHNKVLSPTLGGEEFLAPFRAAARDELEPFILVIEGSIPNENINGDG
                     YWTSFGNDPDTGEPLTLNWWIDQLAPRAWAVVAIGTCAAYGGIHAMAGNPTGCMGLAD
                     YLGWDFKSKGALPIVNIPGCPVQPDNFMETLTWVLYHAAGSAPPPPLDELLRPQWIFG
                     KTVHEGCDQASYYEQGDFAKDYNSPKCQVKVGCWGPVVNCNVPKRGWMGGIGGCPNVG
                     GICIGCTMPGFPDKFMPFMDAPPGGSLSSMLNKPYGAFIRRMRAIT"
     gene            complement(1017..1562)
                     /locus_tag="VF788_20155"
     CDS             complement(1017..1562)
                     /locus_tag="VF788_20155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009155163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX8936443.1"
                     /translation="MDAIELLCHDHRMVEQLFRDYRAAATDGQRRGVVEIIVRELSKH
                     AALEELMFYPLAKEVLPDGRKEIDEHLAEHLSVKKTLLALDGLSAGDDRTDALMADLQ
                     RDVEAHVQEEEGELMPRLRGVCDEQALQELGQELDKGKQTAPTRPHPAAPDKPPLLTV
                     AAPVAAIYDRMRDRLQGRPQT"
     gene            complement(1622..>2529)
                     /locus_tag="VF788_20160"
     CDS             complement(1622..>2529)
                     /locus_tag="VF788_20160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936444.1"
                     /translation="HGEAGRVVRQRWPVSATVWLSVTIADAPFRLLRLRLVTENTADS
                     VAAGVSRSEVLRTSLVATHSVLGVRGGSFVSLLDPPAWAAGAAKNCRNVHTFPVLAGD
                     PDGQDVMLSSPILMYDHPQISPESPGDLFDATEIDEILSLRTLALTDEEKREARATDP
                     HAAAIIDRVDTIPREVLERLHGAVRSLRPVATGCDGAGSVIADELPAPPAARRKPGAD
                     PSVLPETGAVIIDGIKVTKGSRVRLHPRQRGTDVHDMFLEGRTALVEAVVPDVEGAQH
                     VAVTLEDGPGADLHQWYGRFLLLRP"
BASE COUNT          416 a          885 c          789 g          439 t
ORIGIN      
        1 ttgtgatggc gcgcatccgc cggatgaacg cgccgtacgg cttgttcagc atcgatgaca
       61 ggctgccgcc gggtggggcg tccataaacg gcatgaactt gtccggaaag cccggcatgg
      121 tgcagccgat gcagatgccg ccgacgttgg ggcagccgcc gatgccgccc atccagccgc
      181 gcttgggcac gttgcagttg accaccggac cccagcaacc gaccttcacc tggcacttcg
      241 gtgagttgta gtccttggcg aagtcgccct gctcgtagta actggcctga tcacagccct
      301 cgtgcacggt cttaccgaag atccattgcg ggcgcagcag ctcatccagc ggcggtgggg
      361 gtgccgagcc cgcggcgtgg tagagcaccc aggtgagcgt ctccatgaag ttatccggct
      421 ggaccgggca acccgggatg ttcacgatcg gcagcgcgcc tttcgacttg aagtcccatc
      481 ccagatagtc ggccaagccc atgcaaccgg tcgggttacc cgccatcgca tggatcccgc
      541 cgtaggccgc gcacgtcccg atggccacca ccgcccacgc cctgggcgcg agctggtcga
      601 tccaccagtt caaggtcagc ggttccccgg tgtctggatc gttcccgaac gaagtccagt
      661 acccgtcgcc gttgatgttt tcattcggaa tggagccctc gatcaccagg atgaacggtt
      721 ccagctcatc acgcgccgcc gcccggaacg gagccaggaa ctcctcaccg cccagggtcg
      781 gggaaagcac cttgttgtgg aggtggaccg tcggcaaccc gggcaccaac cccatgacca
      841 cgtcctcgat cggcggctgc gatgcagcgg tcaccgaaac ggtgtccccg tcgcaactca
      901 tcccctccga gatccacaag atgtgcatct cgtcgaagcc ctggcgctgt ggcgtcgtgg
      961 ccgtcatctc gggtccctcc gtcctggcac atccgttaca cgtcgtctgt ctgggctcac
     1021 gtttgaggcc tgccttgcag ccggtcccgc atccggtcat agatcgccgc gaccggagcg
     1081 gcaacggtga gcagcggcgg cttgtccggt gctgccgggt gcgggcgggt gggtgcggtc
     1141 tgcttgccct tgtccagttc ctgaccgagt tcctgcagcg cctgttcatc gcatactccg
     1201 cgcaacctgg gcatcagttc gccttcctcc tcctgcacat gcgcttcgac gtcccgctgc
     1261 aaatcagcca tcaatgcatc cgtccggtca tcacctgcag aaagtccgtc caaggcgagg
     1321 agggtcttct tgacgctcag gtgctcggca aggtgctcgt cgatctcctt gcggccatcc
     1381 ggcaggacct ccttggccaa cggatagaac atcagctctt ccagcgccgc atgcttggac
     1441 agctcacgca cgatgatctc caccacgccg cgccgctgac cgtcggtggc ggccgcccgg
     1501 tagtcgcgga acaactgctc gaccatccgg tggtcgtggc acaacagctc gatggcatcc
     1561 atccggtcct ccctgccgtc aggttgagtt ctgcgggccc ccatccagtg gctgcatctc
     1621 gtcaggggcg aagtagtaaa aagcggccgt accactggtg cagatcggcg cccgggccgt
     1681 cttcaagggt gaccgcgacg tgctgggcac cctcgacgtc ggggacaacg gcctcgacca
     1741 gcgctgtgcg gccctccagg aacatgtcgt gcacgtcggt gccgcgctgg cgcgggtgca
     1801 ggcgcacccg actgcccttg gtgaccttga tcccgtcgat gatcacggcg ccggtctccg
     1861 gaagtaccga cgggtcggcg ccgggtttcc gccgggccgc ggggggtgcc ggcagctcat
     1921 ccgcgatcac gctgcccgcg ccatcgcagc cggtcgccac cgggcgcagc gatcggaccg
     1981 ccccatgcag acgctccagc acctcccgcg ggatcgtgtc cacccggtcg atgatcgccg
     2041 cagcgtgggg gtcggtggcc cgcgcctcac gcttctcctc gtcggtcaag gcgagcgtgc
     2101 gcaacgagag gatctcgtcg atctccgtcg cgtcgaacag atcacctgga ctctccgggc
     2161 tgatctgagg gtggtcgtac atcagaatcg gcgaggacag catcacgtcc tggccgtccg
     2221 gatcaccggc caacaccggg aacgtgtgca cgttgcggca gttcttcgcc gcccctgcgg
     2281 cccaggctgg cgggtcgagc agcgaaacga aagatccacc gcgtacgccg agcacggaat
     2341 gcgtcgcgac cagcgaggtc cgtagcacct cagaccgtga tacacccgct gcgaccgagt
     2401 ccgcggtgtt ctcggtgacc agccgcagcc tcagcaatcg gaacggcgca tccgcgatcg
     2461 tgaccgacag ccacacggtc gccgacaccg gccagcgctg gcgaaccacc cggccagcct
     2521 cgccatgac
//
LOCUS       DASVXZ010000960         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1416048, whole genome shotgun sequence.
ACCESSION   DASVXZ010000960 DASVXZ010000000
VERSION     DASVXZ010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416048"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1845)
                     /locus_tag="VF788_20165"
     CDS             complement(<1..1845)
                     /locus_tag="VF788_20165"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HEX8936445.1"
                     /translation="MAGLVGCLDNAGQTRVALAVGERPRVVPLSLAQRRLWFLHQMES
                     ASATYNMLLALRLSGQLDRPALQAAVGDVVARHESLRTIFPQLDGVPYQRVLDGEAAC
                     PELLGTAASHTELPEVLAAAVRYRFDLTAQAPVRTHLFDLGADEHVLLMVIHHIAGDG
                     WSMAPLSRDLSAAYTARCQGQSPGWVPLTVQYADYTLWQLHLLGDLADPDSLFASQVR
                     YWTEALAELPEQLMLPTDYPRPAVASHRGGRVTVRLDAALHKGVVSLARRGGASVFMV
                     LQAGLAALLSRLGAGSDIAVGSPIAGRTDQALDELVGFFVNTLVLRTDTSGDPAFTQL
                     LSRVRETALAAWAHQDVPFDYLVEVLNPTRSLAHHPLFQVMLTVENAPQTDFKLPGLR
                     VSAVPVSTGTAKFDLDFSLCEQRGPHGAPEGIDGVVEYASDLFDPATIEALVARWARL
                     LAAVVADPDRSISRIEILTAEERQRVLVDYNDTTGPISPASLPVLFQTQVQATPQAVA
                     VVFEDTSLTYAQLNGKANRLAHALIVRGVGPEQIVALALPRSAELVVAILAVLKAGAA
                     YLPMDPDNPSARIAFLLRDAHPALLLITSQTLRCVAENIVTPQLVLDDP"
BASE COUNT          360 a          623 c          600 g          286 t
ORIGIN      
        1 agggtcatcc agtaccagct gcggcgtgac gatgttctcg gcaacacacc gcagcgtctg
       61 gctggtgatc agcagcaatg ccgggtgagc gtcgcgtagc aggaaggcga tccgggcaga
      121 cggattgtcc gggtccattg gcaggtaggc agcgccggcc ttgagcaccg ccaggatcgc
      181 caccaccagc tcagctgatc ggggcaaggc caacgccacg atctgctcgg gacccacgcc
      241 ccggacgatc aacgcgtggg cgagccggtt cgctttcccg ttgagctgag cgtaggtcaa
      301 cgaggtgtcc tcgaacacca cggcgaccgc ctgcggcgtg gcctgcacct gagtttgaaa
      361 taacacaggc aggctggcgg gggagatcgg gccggtagtg tcgttgtagt cgaccagcac
      421 ccgttggcgt tcttcagcgg tgaggatttc gatccggctg atcgaccggt ccgggtcggc
      481 caccaccgca gccagcaacc gcgcccaccg cgcgacgagc gcttcgatag tggcggggtc
      541 gaacaggtca ctggcgtact cgacgactcc gtcgatgccc tccggggcgc cgtgggggcc
      601 gcgctgttca cacaggctga aatccaagtc gaacttggcc gtcccggtcg acaccggcac
      661 ggcggatacc cgcaatccgg gcagcttgaa gtcggtttgg ggcgcgttct ctaccgtgag
      721 cattacctgg aacagcgggt ggtgcgccaa tgaccgggtg gggttgagaa cttcgacaag
      781 gtaatcgaac ggcacatcct ggtgggccca ggccgccaac gcggtttccc gcacccgcga
      841 cagcagctgc gtaaaggcag ggtcgccgga ggtgtcggtg cgcaacacca gggtgttgac
      901 gaaaaaccca actagctcat ccaacgcctg atcggtacgt ccggcgatcg ggctgcccac
      961 cgcaatgtcg ctgcctgcac caagccggga caacaacgcc gccagcccgg cttgcagcac
     1021 catgaacaca ctcgccccgc cgcggcgggc cagactcacc acacccttgt gcaacgccgc
     1081 gtccaaccga accgtcaccc ggccgcctcg gtgggaggcc actgctgggc gtgggtagtc
     1141 ggtgggcagc atgagctgct cgggcagctc cgcgagcgcc tcggtccagt acctcacctg
     1201 gctggcgaac agactgtccg gatcagccag gtcaccgagc aggtggagct gccacagcgt
     1261 gtaatcggcg tactgcaccg tcaacggcac ccaccccggc gactggcctt ggcaacgggc
     1321 ggtgtacgcg gcagataaat cgcgcgacaa cggcgccatc gaccagccgt caccggcaat
     1381 atggtggatc accatcagca gcacatgctc atctgcgccc aggtcgaaca agtgggtccg
     1441 caccggcgcc tgcgcggtaa ggtcgaaccg gtaccgaact gcagccgcta acacctcggg
     1501 caactcggtg tggctggcag cggtgccgag aagttcagga caggccgcct cgccgtcgag
     1561 aactcgctga taggggaccc cgtcgagctg agggaagatc gtgcgcaggc tctcgtggcg
     1621 ggccaccacg tcacccacgg cagcctgtaa cgctgggcgg tccaactgtc cggacaggcg
     1681 caacgctaac agcatattgt acgttgcgct ggcgctctcc atttggtgca aaaaccataa
     1741 ccgacgttgt gctaatgaca gcggcaccac acgagggcgc tcacctaccg ccaacgccac
     1801 ccttgtctgc cccgcgttat ccagacaccc gaccagcccc gccaccgtcg aggtctcgaa
     1861 gagggcacg
//
LOCUS       DASVXZ010000961         4795 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1508032, whole genome shotgun sequence.
ACCESSION   DASVXZ010000961 DASVXZ010000000
VERSION     DASVXZ010000961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4795
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1508032"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VF788_20170"
     CDS             complement(<1..239)
                     /locus_tag="VF788_20170"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229975.1"
                     /note="catalyzes the phosphorylation of
                     4-diphosphocytidyl-2-C-methyl-D-erythritol in the
                     nonmevalonate pathway of isoprenoid biosynthesis; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEX8936446.1"
                     /translation="MVLAVVPQPVTVRVPAKVNLYLAVGNLRRDEYHELVSVYQALSI
                     IDEVTVAVTDEPGVQVHGEGAGTVPTDHRNLAWRAV"
     gene            complement(274..1170)
                     /gene="rsmA"
                     /locus_tag="VF788_20175"
     CDS             complement(274..1170)
                     /gene="rsmA"
                     /locus_tag="VF788_20175"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEX8936447.1"
                     /translation="MDRATTPTTPGPALLGPAELRELADRLALRPAKRLGQNFVHDAN
                     TVRRIVAVAELAPDDVVLEVGPGLGSLTLALVGAVEVVLAVEVDPLLAGALPATVADR
                     APHHAGALRVCNADALRITRAELVEAAGGRSPTALVANLPYNVGVPVLLHLLAELPSL
                     RRGLVMVQAEVADRLAAPPGTRTYGAPSVKAAWFADVRRAGAVPRAVFWPVPNVDSGL
                     VSLTSHPAPSTVPREQVFALVDAAFAQRRKTLRAALAGWAGSAANAEQVLRAAGVDPG
                     LRGEQLAIHDYARIACERVTVL"
     gene            complement(1221..2330)
                     /locus_tag="VF788_20180"
     CDS             complement(1221..2330)
                     /locus_tag="VF788_20180"
                     /inference="COORDINATES: protein motif:HMM:NF018447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase family protein"
                     /protein_id="HEX8936448.1"
                     /translation="MTTRTLVRGALVAAGLALPTGTAVALAMDKTVTITVDDEQRTIH
                     TFASSVSGALKSAGLQVGDQDALAPTGNSAIENGSRIVLQRGRPLALTVDGAQHEIWT
                     TALTVDSALQQVGMHSPDMELSSHPAKRIPLEGMSLVVRITKPVTLLDGGQPPKEIQA
                     TALSVGDLLTQQGVPLHDQDTVTPGRTAPVLPGMTVQVTRVRSEQRTERRLIDPPVKK
                     IKDPGIPAGSVVVEDPGAPGEQIVTYLVTLANGKETDRKQLSMQESSPARPARIRVGA
                     KSPVKGAPVAEGSVWDRLARCESGGNWAANTGNGYYGGLQFDKATWSANGGNQYAPYP
                     HQASREQQIAVAQRVRNARGNYRAWPTCSAQMGVA"
     gene            complement(2532..3386)
                     /locus_tag="VF788_20185"
     CDS             complement(2532..3386)
                     /locus_tag="VF788_20185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX8936449.1"
                     /translation="MDVRELPPAPVPLPVSVVDAHTHLDACGATNPAGVHAALDRAAA
                     VGVSAVVTVADDMTAARWVVQAASWDDRVFAAVALHPTRTAIMTGADRAELERLAAAS
                     RVVAVGETGLDYYWPQVDPRCSPPQAQQDAYRWHIDLAKRLGKPLMIHDRDAHRDVLA
                     ILEQEGAPPTVVFHCFSGDAAMARTCVEAGYVLSFSGTVTFRNARALREAAALVPDGQ
                     LLVETDAPFLTPHPHRGKANEPVNLPYTVRDLAALRGQDVADLAASSSATAERVFGIG
                     PTDTAGRF"
     gene            complement(3426..>4795)
                     /locus_tag="VF788_20190"
     CDS             complement(3426..>4795)
                     /locus_tag="VF788_20190"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEX8936450.1"
                     /translation="CPICGYESARGDQCDNCGNQLDPADLINPRSRINGETPKFVQTE
                     HLFLDLPAFTKALGGWLSTRTEWRPNVLRFSLNLLDDLRPRPITRDLDWGVRVPLDGW
                     RDAPMKRFYVWFDAVIGYLSASVEWAARSGDPDAWQAWWCDPDARSYYFMGKDNITFH
                     SQIWPAMLLGHNGLGDHGGEPGPFGMLNLPTEVVSSEFLTMSGSKFSTSRGTVIYVGD
                     FLREFGPDTLRYFISVAGPETQDTDFTWDEFVRRINFELANEWGNLVNRSISMAHRNV
                     GAVPQPAALEAVDFELLATSRMAFDTVGTLLERNRFKAAIGEAMRVVGAANKYLSEQE
                     PWKRGDDPARRDTILHTALQVVSDANTLLTPFLPHAAQQVHEQLGGIGVWSAQPKITE
                     VSEIVEGGGPDYPVITGDYAAEQARWRSIPIEAGRPLAKPTPLFTKLDPSLGDTGPAW
                     APISS"
BASE COUNT          776 a         1612 c         1622 g          785 t
ORIGIN      
        1 accgcacgcc acgcgaggtt gcggtgatcg gtcgggaccg tcccggcacc ctcgccgtgc
       61 acctgcacac cgggctcgtc ggtgacggcc acggtcacct cgtcgatgat ggacaacgcc
      121 tggtacacgc tgacgagttc gtggtattcg tcccggcgca ggtttcccac agccaggtac
      181 agattgacct tggcagggac ccgcacggta accggttgcg gcacgacggc aagcaccata
      241 caagagtacg gggcccgtga gtgatatttc gtgctataac actgttacgc gctcacaagc
      301 aatccgcgcg tagtcgtgga tcgcaagttg ctcaccgcgc aggcccggat ccaccccggc
      361 ggcgcgcagt acctgctcgg cgttggcggc cgagcccgcc cacccggcca gggccgcccg
      421 cagggtcttg cggcgctgcg cgaacgcggc gtcgaccagc gcgaagacct gctctctggg
      481 cactgtggac ggtgctgggt ggctggtcag ggagaccagg ccggagtcca cgttggggac
      541 tggccagaac accgcgcggg ggaccgctcc agcacggcgg acatcggcga accaggccgc
      601 cttgacgctg ggagcgccat aggttcgggt gcccggcggc gcggccagcc ggtcggccac
      661 ctcggcctgc accatcacca ggccccggcg caggctgggc agctccgcca gcaggtgcag
      721 cagcaccgga acgccgacgt tgtagggcag gtttgcgacc agtgcggtgg gggaccggcc
      781 accagccgct tcgacgagct cagcgcgcgt gatccgcaac gcgtcggcgt tgcatacccg
      841 cagcgcaccg gcgtggtgcg gggcacggtc agccaccgtg gcaggcaacg cgccggccag
      901 cagtgggtcc acttccacgg ccaacaccac ctcgaccgcg ccgaccaagg caagggtgag
      961 cgatccgagt cctggcccga cttccagcac gacatcatcc ggcgccagct cggcgactgc
     1021 gacgatccgg cgcaccgtgt tggcatcgtg cacgaagttc tgccccaacc tcttggccgg
     1081 tcgcagtgcc agccgatcgg caagttcgcg cagttcagcg ggtccgagga gggcggggcc
     1141 gggtgtggtt ggcgtggtgg cgcggtccac ctcgtggttc actctccggt cttaccatca
     1201 ccgacgaccc cgcgcgccgg tcaggcaaca cccatctggg ccgagcaggt gggccaggcg
     1261 cggtagttgc cacgggcgtt acggaccctc tgggctaccg cgatctgctg ctcgcggctt
     1321 gcctggtgcg ggtagggggc gtactgattg ccgccgttgg cgctccaggt ggccttgtcg
     1381 aactgcaagc caccgtaata gccgttgccc gtgttggcag cccagttgcc gccggactcg
     1441 caccgagcca gccggtccca gaccgagccc tcggcgaccg gggcgccttt caccgggctc
     1501 ttcgcgccaa cccggatccg ggcgggccgc gctgggctgc tctcctgcat ggagagctgc
     1561 ttgcgatcag tttccttgcc gttggccagg gtgaccaggt aggtgacgat ctgctcgccc
     1621 ggtgcgccgg gatcctcgac aaccacgctg ccggccggta ttccgggatc tttgatcttc
     1681 tttaccgggg ggtcgatcag gcggcgctcg gtgcgttgct cgctacgcac ccgggtaacc
     1741 tgcacggtca tgcccggtag cacgggcgcc gtgcggcccg gggtgaccgt gtcctgatca
     1801 tgcagcggca cgccttgctg agtaagcagg tcccccaccg agagcgcagt ggcctggatc
     1861 tccttgggcg gctgaccacc gtcgagcaga gtgaccggct tggtgatccg gaccaccagg
     1921 gacatccctt ccagcgggat ccgcttggcg ggatgagagg acagctccat gtccggggag
     1981 tgcatcccta cctgctgcaa cgccgaatcg acggtcagcg ccgtggtcca gatctcgtgt
     2041 tgtgccccgt cgacggtcag cgccagtggc cgaccacgct gcagcacgat ccggctgcca
     2101 ttctcgatgg cgctgttccc ggtgggggcc agcgcatcct ggtcacctac ctgcaatccc
     2161 gcggatttca gcgctcccga gaccgacgaa gcgaacgtgt ggattgtccg ctgctcatcg
     2221 tccaccgtga tggtgacggt cttgtccatg gcgagagcta cagcagtacc ggttggaagc
     2281 gccaggccag cagctacgag ggcgcctcgg acgagcgtgc gagtagtcac ctatgtccag
     2341 tcgtcgcagt tccgggcagg ggaagcacga gaacacctgc ctcaggcttc gccaggcgac
     2401 cgcatcgcca cccgactgtg acctacgttc tcgtgccggg aactacccca tcccggctga
     2461 cggtgacgga acggtaacgg ttggtagcag aacgtgcaaa catctgtcag gaggtgttgc
     2521 cgataagtcg tctagaagcg cccagcggta tcggtcgggc cgatcccgaa gacccgctcg
     2581 gcggtcgctg aactcgacgc cgccagatcg gccacgtcct gcccccgcaa ggctgcgaga
     2641 tcgcgcacgg tgtagggcag gttgaccggt tcgttggcct ttccgcggtg tggatgcggg
     2701 gtgaggaacg gggcgtcagt ctccaccagc aactgcccgt ccggtaccag cgcggcggcc
     2761 tcccgcagtg cgcgggcatt gcggaaggtc accgtgccgg agaaggacag cacgtaaccg
     2821 gcctcgacgc aggtccgcgc catcgcggcg tccccggaga aacaatggaa caccacggtg
     2881 ggcggcgctc cctcctgttc caggattgcc agtacatcgc ggtgtgcgtc cctgtcgtgg
     2941 atcatcagcg gcttgccgag ccgcttagcc aggtcgatgt gccagcgata ggcgtcctgc
     3001 tgcgcctgcg gcggtgagca gcgtggatca acttggggcc agtaatagtc cagaccggtc
     3061 tcccccaccg caacgacccg agatgctgcc gcgagtcgct cgagctcggc gcggtcggcg
     3121 ccggtcatga tcgcggtgcg cgtggggtgc aacgccacag cagcgaagac ccggtcgtcc
     3181 cagctggccg cctgcaccac ccaacgagct gcggtcatat cgtcagccac cgtcaccact
     3241 gccgagacac ccaccgccgc ggcccggtcc agtgccgcgt gaacccctgc cgggttggtt
     3301 gccccacaag catccagatg cgtatgtgcg tcaaccacac tgaccggcaa cggcaccggc
     3361 gccggcggca gttccctcac atccattccc tgcccactcc gctcaatgcg ctacagatgc
     3421 gggtctcagg atgagatcgg ggcccaggcg ggaccggtgt cgccgaggct ggggtccagt
     3481 ttggtgaaca ggggggtggg tttggccagc gggcggccgg cctcgatggg gatgctgcgc
     3541 cagcgggcct gctcagcggc gtagtccccg gtgatcaccg gataatccgg gccgccaccc
     3601 tcgacgatct cgctgacctc tgtgatcttc ggctgggctg accatacccc gatgccaccg
     3661 agctgctcat gcacttgctg ggcggcgtgc ggcaggaacg gggtgagcag cgtgttggcg
     3721 tctgaaacga cctgcagcgc ggtgtgcagg atggtgtccc ggcgcgctgg atcgtcgccg
     3781 cgcttccatg gttcctgctc ggagaggtac ttgttcgccg cgcctaccac ccgcatcgcc
     3841 tcgccgatcg cagccttgaa ccggttgcgc tccagcaggg tgccgacggt gtcgaaggcc
     3901 atccgcgagg tggccagcaa ctcgaagtcc accgcttcca gggcggcggg ctgcggcacc
     3961 gcgccaacgt tgcggtgcgc catcgagatc gaccggttga ccaggttgcc ccactcgttg
     4021 gccagctcga agttgatccg gcggacgaac tcgtcccagg tgaagtcggt gtcctgggtt
     4081 tcgggaccgg ccaccgagat gaagtagcgc aaggtgtccg gaccgaactc gcgcaggaag
     4141 tccccgacgt agatcaccgt gccgcgggag gtggagaact tcgagccgct catggtgagg
     4201 aactcgctgg ataccacctc agtgggcagg ttcagcatgc cgaacggccc aggttcacca
     4261 ccgtgatccc ccagcccgtt gtggcccagc agcatggcgg gccagatctg ggagtggaag
     4321 gtgatgttgt ccttgcccat gaagtagtag gagcgggcat cgggatcaca ccaccaggcc
     4381 tgccacgcgt ccgggtcgcc cgagcgcgcc gcccactcca ccgacgccga caggtacccg
     4441 atcaccgcgt cgaaccagac gtagaaccgc ttcatcggcg catcgcgcca gccatccagc
     4501 ggcacccgca ccccccagtc caggtcccgg gtgatcgggc ggggacgcag gtcgtcgagc
     4561 aggttcagcg agaacctgag cacattgggc cgccactcgg tgcgggtgga cagccatcca
     4621 ccgagcgcct tggtgaacgc gggcaggtcg aggaacaagt gttcggtctg cacgaacttc
     4681 ggggtctcac cgttgatccg ggaccgcgga ttgatcaggt cggcggggtc gagctggttg
     4741 ccgcagttgt cgcactggtc accccgtgcg ctttcataac cgcagatggg gcagg
//
LOCUS       DASVXZ010000962         3311 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1416312, whole genome shotgun sequence.
ACCESSION   DASVXZ010000962 DASVXZ010000000
VERSION     DASVXZ010000962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416312"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VF788_20195"
     CDS             <1..537
                     /locus_tag="VF788_20195"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX8936451.1"
                     /translation="FPSSPRGINSGRPAARPVPRRSNPVASYGMNDVQQIQVSRIIEA
                     PVERVFLLLADPDRHPDLDGSGTLRASRTHTVLTELGDVFIMDLNTEDHGDYQCQSVV
                     TTYVRDRALGWSPGPVDGDPFGDTFTFTLEPDGDDRTLVILTYDWSAVTDEQLLAMMP
                     RVSREDLTSSLDRIATAL"
     gene            complement(847..1113)
                     /locus_tag="VF788_20200"
     CDS             complement(847..1113)
                     /locus_tag="VF788_20200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936452.1"
                     /translation="MARASALTSIRTDLYPKEVLISSLDSRFRSWLGGARGKKIAVQL
                     ALGVYSERGSSPDLGTLEDYNSYVGLCSDVKRYSQVHPGGYVCW"
     gene            complement(1299..2018)
                     /locus_tag="VF788_20205"
     CDS             complement(1299..2018)
                     /locus_tag="VF788_20205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HEX8936453.1"
                     /translation="MTHPQPPDNPPPPWNYPSTQPTAAPRNGFSITALALALSGLVFG
                     LVPFTGFLALILGALAVLFGILGWARVRRREATNRKMAITSTGLGVLVAALGIWGISI
                     TFNAMNKLGGSLQGIGQQLSPAVSAEYPNTTYRNAAPTPLPSDFSITVSIMKKACFGT
                     AGCTVAYRINPTYKYPGSAPLTGRALTVIYEVSGGEYGPQINNFRIGNDGTATFPSQE
                     FTSTSSSAATLAAKATSVSEN"
     gene            complement(2433..3077)
                     /locus_tag="VF788_20210"
     CDS             complement(2433..3077)
                     /locus_tag="VF788_20210"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8936454.1"
                     /translation="MSHLLAEVHRPGATVPGASAEEITSVMEWCSVDLDGARPIGRWL
                     RQIRQARRKSLRVVAGLARLSSWHLHRIETGVRPLDNLTLILALADALQAAPSELVTL
                     PVPAPGNGPTDGAINAVRLALLAVGHNRPGGKAQPVEALRKRVAAVADAYCQCDRNGV
                     VGAVASLIRDLHTSIATGRDVAELLDLAVLLHSHATVGWRRELRGMAYWAGLPA"
BASE COUNT          619 a         1030 c         1019 g          643 t
ORIGIN      
        1 ttcccaagct caccacgcgg gatcaattcc ggtcggcccg ctgcccgtcc ggttcctcgc
       61 cggtcaaacc cggtagcgtc ctacgggatg aacgacgtgc agcagatcca ggtctctcgg
      121 atcatcgagg cgccagtgga gcgggtgttc ctcttgctcg ctgaccccga ccggcacccc
      181 gacctggacg gatcagggac gttgcgtgcc tcgcgaaccc acacagtgct cactgagctc
      241 ggcgatgtgt tcatcatgga cctgaacacc gaggatcatg gggactacca gtgccagagc
      301 gtcgtgacca cctatgtccg cgaccgcgcc cttggctggt cgcctggtcc ggtcgatggt
      361 gaccctttcg gcgatacctt cactttcacg ctcgaaccgg atggcgacga tcgcaccctg
      421 gtgatcctga cctacgactg gtccgcggtc accgacgaac aactgctcgc gatgatgccc
      481 cgagtgtcga gagaggatct gaccagctca ctcgacagga tcgctaccgc gctgtagatc
      541 ctcggaggac gctgctgttg gcgggcaact cttcccgcat gatctaggtc agtgtgtggg
      601 gcacgcggga tagatcaaga tcaggccgtc tccaggccgt cagacgtcgg gcagaggtga
      661 gaacgggcga gaactactga gacatatttc cgctgtttat cagcctttct tggtagatcg
      721 ccggatcatc tcgaccaggt gagagatcac ccagatctac gagggcacca accagctcca
      781 acgcatggtc atgactcgcg ccctgctcaa ctcctagctc gcgcgatcgt cgtctatcac
      841 gcttaatcac caacacacgt agccgccggg atgcacctga gaatatcgct tcacgtcgga
      901 acacaagccg acgtacgaat tgtaatcctc taaagtgccg agatctggag agctgcctcg
      961 ttcggagtag acacctaggg cgagctgcac cgctatcttc tttcccctcg caccgcctaa
     1021 ccaagatcta aaccggctat ccaggctgct gatcaagact tccttcggat acaggtcggt
     1081 gcggatcgag gtgagcgctg aagcccgtgc catgacttgc tggttccggg tcggtcccgt
     1141 gctcccagat acgtaggtca tagttctctg ttgtgtctgc ggttcgccgc tgttaccgat
     1201 gacgactccg atgatcataa gcagcgcgaa catgcctaga gctttcgatg gcagtggaaa
     1261 cacgctggcc tccgggattc cccctcgcag tgggctggtc agttctctga gacgctcgtc
     1321 gccttggctg ccaaggtcgc tgcagatgac gatgtgctgg tgaactcttg actcgggaag
     1381 gtggcagtgc cgtcgttgcc gatcctgaag ttgttgatct gggggccgta ctcgccaccg
     1441 gaaacctcat agatcacggt gagggcgcgt cctgtcagcg gtgctgaacc ggggtacttg
     1501 taggtcgggt ttatccggta ggcgacggtg cacccagcgg tcccgaaaca cgcctttttc
     1561 atgatcgaaa cagtgatgct gaagtcagac ggcaacgggg tcggtgctgc atttcggtaa
     1621 gtggtatttg ggtattctgc gctgactgcg ggtgataatt gctgaccgat accttgtaag
     1681 ctgccgccca gtttgttcat ggcgttgaac gtgattgaga ttccccagat gccgagcgct
     1741 gcgacgagca cgccgaggcc ggtgctcgtg atagccatct tccggttcgt cgcttcgcgc
     1801 cggcgaaccc gggcccaacc caggatgccg aaaaggacgg ctagtgcacc gagtatgagg
     1861 gccaggaacc cggtgaacgg aacgaggccg aatacgaggc cgctcagggc gagcgcgagc
     1921 gcggtgatgc tgaaaccgtt ccgtggagcg gcggtaggtt gtgtcgaggg gtagttccac
     1981 ggcgggggcg gattatccgg tggctgcgga tgggtcatcg cgacgtcccc gttctccccc
     2041 tccttgccct ttgttcatcg accacctcac caaagacgtt acgtcccttt tcttacggta
     2101 tgacgtcatt ccgtgttccg ttggtgacgt ccagcgatca ctgcttgttt gttactttca
     2161 gtgcccggcg tccctcgccg caatcgaagt cgggggaaca acgcctcaag cggtgacccg
     2221 gccggaatcg tgggggatca gctcagtcga actgccgccg ctcgcacccg tgcaggccgg
     2281 gcagaccgcg ctgtgttggc ggggtcgtca ttggccgccg gggttggcgg cgagcgactg
     2341 aaccgcccgc attcgcctca gaagatcaca attggccata gtgaatgcga tcagcacgtg
     2401 gtgtccccga tcagaaacgc acacccgatg ggctacgccg gcagaccggc ccagtaagcc
     2461 atcccgcgca gctcccggcg ccagccaacg gtagcatggg aatgcaacag caccgcgaga
     2521 tctagcagtt cggcgacatc acgaccggtc gcgatcgacg tgtgcaggtc gcggatcaag
     2581 ctggcaaccg cgccgactac gccattacgg tcgcactggc agtaggcatc cgctaccgcg
     2641 gcgacccgct tccgcaaagc ctcgacaggt tgggcctttc cgcccgggcg attgtggccg
     2701 actgccagca gcgcgagccg caccgcgttg atcgcaccat cagtggggcc gttgccgggc
     2761 gcgggtacgg gcagcgtgac cagttccgag ggcgcagcct ggagcgcgtc ggccagtgcc
     2821 aggatcaacg tcaggttgtc tagcggccgt accccggtct cgatccggtg caggtgccag
     2881 gagctgagcc tggccaaccc ggcgaccact cgcagcgatt tacgccgggc ctggcggatc
     2941 tggcgcaacc accggccgat cgggcgcgcg ccgtcaaggt ccaccgagca ccactccatc
     3001 accgaggtga tctcctccgc cgatgctccc gggaccgtcg cccccgggcg gtgtacctcg
     3061 gcgaggaggt gactcaaggc tacgcgacgc acccctcaac atggagacgg cctcggcgga
     3121 tgtgtgaagt ttatgcatgg atttttgcgc gctaattgcc tccatcattg cattccttgc
     3181 ggctgcgcta gcgcttattt cgctaggcaa caggtggcgg cagcgaacat ccaagcgaag
     3241 gcatcgaagg cgcaggcgga gagcaacccc aaacgaccgc agacgttgag cgaacccgag
     3301 gccatcccat c
//
LOCUS       DASVXZ010000963         2634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1416602, whole genome shotgun sequence.
ACCESSION   DASVXZ010000963 DASVXZ010000000
VERSION     DASVXZ010000963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416602"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..780)
                     /locus_tag="VF788_20215"
     CDS             complement(<1..780)
                     /locus_tag="VF788_20215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013230794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEX8936455.1"
                     /translation="MRVLVIGAGAREHALVLALSRDPGVTALACTPGNAGTAALAEQP
                     GADVTDPAAIATLAASWSADLVVIGPEAPLVAGAADAVRAADIACFGPSSGAAQIEGS
                     KAFAKDVMGAAGVPTARSELVDNPGRLNAALSHFGPPWVVKDDRLAAGKGVVVTQDIE
                     VARAHALTLLDGGHPVLLESYLDGPEVSLFCLVDANRTVVPLLPAQDFKRVGEGDVGP
                     NTGGMGAYAPLPFAQESLAADMAALIVQPVVDELALRGVPFF"
     gene            915..>2634
                     /locus_tag="VF788_20220"
     CDS             915..>2634
                     /locus_tag="VF788_20220"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEX8936456.1"
                     /translation="MSGQAQFVTLAELARAWSDAMSSNSEVPIPAYWVEECLRDQLGR
                     LVDVLRNQEYRPELTTLVGETLVSKGFTGEHALARTLEVLRRALPRMPELHTISELDS
                     KIPSLLDGMSSGYTAALPRRTLEDREIWYRDVVTSILDMFDSAPLGLAISRLDGTVTE
                     INSGLTEVLQYPPAKLAGQELGEIFHPDDAATLTAAYQGLSDRTQGPYSCEGRKRGFQ
                     RKVKLLAANGDTIWAVLTVLVLRDAAGNPTHHLTMIEDITDRQLLEQRVRHQTLHDLL
                     TGLPNRLHFAIHLEAVLERNRQAAVLLCKIDLDRFAVVNDGLGLGSGDFMLRSVAARL
                     QGLFVGEQAFLARFGADEFAVLIEESPTTPSAATLATLINAELSEPVYFAGRALSASA
                     CIGFVRRTPGEADANELIRAGEATLHRAKRTGRGQWAMYDPPADAQQRAQYALAADMP
                     AAWENGEIALSYQPLVRLNSATADAGSIVAFVILLHWEHPEHGVVTHEDCLELAEQTG
                     LVLSIGPWMLQEACDQLRDWRDQLGVPVPPVRVDLTTHLTQDPDLVAVVRAALTKAQL
                     PPEELQV"
BASE COUNT          457 a          917 c          859 g          401 t
ORIGIN      
        1 gaagaacggg acaccgcgca gggccagctc gtccaccacc ggctgcacga tcagcgccgc
       61 catgtcggcg gccagcgact cctgggcgaa gggcagcggc gcataggcgc ccatcccccc
      121 ggtgttgggg cccacgtctc cttccccgac ccgcttgaag tcctgagcgg gaagcagcgg
      181 caccaccgta cggttggcat cgaccaggca gaacagcgaa acctctggcc cgtcgaggta
      241 ggactccagc agcaccgggt ggccgccatc gagcagggtc agcgcgtggg ctctggccac
      301 ttcgatatcc tgggtgacca cgacgccctt acccgcagcc agccgatcat ccttcaccac
      361 ccagggcggg ccgaagtggc tcagcgcagc attcaaccga ccgggattgt ccaccagctc
      421 gctgcgcgcg gttggcaccc cggcagcgcc catcacgtcc ttggcgaacg ccttggatcc
      481 ctcgatctgc gccgcaccgg aggagggccc gaaacaggcg atgtcggcgg cgcgcaccgc
      541 gtcggccgcc ccggccacca gcggtgcctc cggaccgatc accacgagat cggctgacca
      601 cgacgccgcc agtgtcgcga tcgccgccgg atcggtgacg tcagcgccgg gctgctcggc
      661 cagagccgcg gtgccggcat tgcccggcgt gcaggccaac gcagtcaccc ccgggtcgcg
      721 ggagagcgcc agcacgagcg cgtgctcgcg ggcgccagcg ccgatcacca gaactcgcac
      781 agtgcgcagg gtacggaggc cggccgacgg cccaaccgca tggcctagcg aagtcgctaa
      841 ctcggaaggg tgacaaccga tacactggcg ataccggtag taccggtgtc ggtacgtgag
      901 gtgacgaaga gaacatgagc ggtcaggcac agttcgtcac gcttgccgag ctggcgcgag
      961 cctggtcgga cgcgatgagc tcgaactccg aggttccgat accggcctac tgggtagagg
     1021 aatgtctccg tgaccagctc ggccgcctgg tagacgtgct caggaaccag gagtaccgcc
     1081 cggagctgac gacgctggtc ggcgagacgc tggtgagcaa gggcttcacc ggtgagcacg
     1141 ccttggcccg gaccctggag gtcctcagac gtgccctgcc caggatgccc gagttgcaca
     1201 ccatttcgga actcgatagc aagatcccga gcctgctcga cgggatgagc tccgggtaca
     1261 ccgccgccct gccgcgtcgt accctcgagg atcgcgagat ctggtaccgg gacgtggtga
     1321 ccagcatcct ggacatgttc gactccgcgc cgctgggctt ggcgatcagc cgcctggacg
     1381 gcaccgttac cgagatcaat tccgggctga ccgaggtcct ccaatacccg cccgccaagc
     1441 tcgccggcca ggagctgggt gagatctttc atcccgacga tgcggcgacg ctgacagctg
     1501 cctaccaggg cctcagcgat cgcacccagg ggccttactc ctgcgaggga cgcaagcgag
     1561 gcttccagcg aaaggtcaag ctgcttgcgg cgaacggcga caccatctgg gctgtgctga
     1621 cggtgctggt cctgcgcgac gccgcaggca acccgacgca ccacctcacg atgatcgagg
     1681 acatcaccga tcgtcagcta ctcgagcagc gggtccgcca ccagacgctg cacgacctgc
     1741 tcaccgggct gcccaaccgg ctgcacttcg cgatccactt ggaggcggtg ctcgaacgga
     1801 accgtcaggc ggccgtcttg ctgtgcaaga ttgatttgga tcgcttcgcg gtcgtcaatg
     1861 acgggctcgg cctgggctca ggtgacttca tgctgcgatc ggtcgccgcc cggctacagg
     1921 gcctgttcgt tggagaacaa gccttcctcg cccgattcgg tgccgacgag ttcgcggtcc
     1981 tcatcgagga gtcgccgacc acgccgagcg ccgcgactct cgccacgctc atcaacgccg
     2041 agctctccga accggtctac ttcgccggcc gcgcgctcag cgcgtcggcg tgtatcggct
     2101 tcgtgcgacg gacccccggt gaagccgatg ccaacgagct gatccgcgcc ggggaggcga
     2161 cactgcaccg ggccaagcga accggccgtg ggcagtgggc gatgtatgac ccacctgccg
     2221 acgcccagca gcgggcgcag tacgcgttag ccgctgacat gcccgccgcc tgggagaacg
     2281 gtgagatcgc cctgtcctat cagccgctgg tgcggctcaa ttccgccacc gccgacgccg
     2341 ggtcgatcgt ggcttttgtg atcctgcttc attgggagca cccggaacac ggtgtcgtga
     2401 cccacgagga ttgcctcgag ctcgccgagc agaccggtct cgtgctgtcg atcggaccgt
     2461 ggatgctcca ggaggcctgc gaccaactgc gtgattggcg tgaccagttg ggagtccccg
     2521 tgccaccggt ccgcgttgac ctgacaacgc acctgacgca ggatcccgat ctggtggccg
     2581 tggtacgcgc cgccctgaca aaggcccagc tcccacccga ggaactccag gtgg
//
LOCUS       DASVXZ010000964         1696 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1509336, whole genome shotgun sequence.
ACCESSION   DASVXZ010000964 DASVXZ010000000
VERSION     DASVXZ010000964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1509336"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1679)
                     /locus_tag="VF788_20225"
     CDS             complement(<1..1679)
                     /locus_tag="VF788_20225"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX8936457.1"
                     /translation="MTSGRDRAELDNVAGFFVNTVVLRSRVQPSQPFSQFLTAVRETV
                     LEAFAHDAVPFDRLIEELRPDRDPSRTPLVQAVVVLQQEMVPPREIAGLHIAEHNLPR
                     PSARFDLVVEFLPRDDSLNITVEYNTDLFDASTIAELVASLEVLLEGLASDPARQLAE
                     LPALTQQQRHRLLVDCNDTALAVPTALWTELFEAQVVRAPDAAAVICMGEELSYRELN
                     ERANRLARLLIEHGAGPERCVALALPRSADMVVAAVAAWKAGTAYLPIDPGEPPARIE
                     FLLADCCPALVVTTSAAQDRLAEVAAAHRLIVDDAETAEALVRCSGQDVHAERVSPAH
                     PAYLHYTSGSVGAPRGVVITHASVAALAVWAAVDLGSAGLSRVIASSSLTSDMSVLEI
                     FCPLVTGGTIEVVRDGLALDESRLGASAASLVSGTGSALIQGLSRSNGGLRADTVVLA
                     GEALSARTAWEIQAATSCRRLVNIYGCTELTGCATAWYSGQATPGSAVPEQPPPIGRP
                     IANTQVYVLDARLRPVPAGVPGELYVSGHGLARGYLRQPGSTAQRFVANPFG"
BASE COUNT          297 a          600 c          563 g          236 t
ORIGIN      
        1 ccgaacggat tcgccacgaa ccgctgcgcg gtcgatcccg gctggcggag atagccgcgg
       61 gcaaggccat ggccactgac gtacagctcg cccggcaccc cggccggcac cggccgcaac
      121 cgcgcatcga gcacgtacac ctgcgtgttg gcgatcggcc ggccgatcgg aggtggctgc
      181 tccggcactg ccgagccggg cgttgcctgg cctgagtacc acgcggtcgc gcacccggtg
      241 agctcggtgc agccgtagat gttgaccagc cgccggcacg acgtcgccgc ttggatctcc
      301 cacgccgtcc gggctgagag cgcctcccca gccaagacga ccgtgtcggc gcgcagcccc
      361 ccgttactgc gggacaaccc ttgaatcagt gcggaaccgg tcccgctgac caggcttgca
      421 gcactggcgc ccagccggga ttcgtccagc gcgagcccgt cgcgcaccac ctcgatggtc
      481 ccgccggtca ccaacgggca gaagatctcg aggaccgaca tatcggaggt cagggagctc
      541 gaagcgatca cccgggacag gccagcggaa ccaaggtcca cggcagccca caccgcgaga
      601 gcagccacac tcgcgtgggt gatcactact cccctcggtg ctcccacaga gccggaggtg
      661 tagtgcagat atgccgggtg cgccggcgac acccgctcgg cgtggacgtc ctggcccgaa
      721 cagcgcacca gcgcctcggc cgtctcggcg tcatcgacga tcaggcgatg cgcagcggcc
      781 acctccgcca accggtcctg tgccgcgctg gtagtcacca ccaacgcggg gcagcaatca
      841 gcgagcagga actcgatccg cgcaggtggt tcaccggggt cgatcggcag gtaagccgta
      901 cccgccttcc acgccgccac cgcagcgacg accatgtccg cggaacgtgg caacgccagc
      961 gccacacatc gctccggacc tgccccatgt tcgatcaaca gccgggccag gcgattcgcc
     1021 cgctcattca attcccggta ggaaagctcc tcacccatgc agatgaccgc ggcagcatcc
     1081 ggtgcgcgca ccacttgcgc ctcgaacagc tccgtccaca gcgccgtggg cacggccagc
     1141 gcggtgtcgt tgcaatccac cagcaaccgg tgtcgctgct gctgggtcag cgccgggagc
     1201 tcggccagct gccgggcggg atcgctggca agaccctcga gtagcacttc cagacttgcc
     1261 accaactccg cgatggtgct cgcgtcgaac aggtcggtgt tgtactcgac ggtgatgttc
     1321 agggagtcgt ccctgggcag gaactccacg acgaggtcga accgggcaga cggacggggc
     1381 aggttgtgct cggcgatatg caggccggcg atctcgcgcg gcggcaccat ctcctgctgc
     1441 aacaccacca cggcctgcac gaggggggtg cggctgggat cgcgatccgg ccggagctcc
     1501 tcgatcaggc ggtcgaacgg aaccgcgtcg tgggcgaagg cttccagcac ggtctcccgg
     1561 acggcggtga ggaactggct gaagggctgg gaaggttgca cccgggagcg caacacgacg
     1621 gtgttgacga agaagccggc gacattgtcc agttcggccc gatcgcgccc ggacgtcacc
     1681 gtgccgacgg cgatgt
//
LOCUS       DASVXZ010000965         4271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1419871, whole genome shotgun sequence.
ACCESSION   DASVXZ010000965 DASVXZ010000000
VERSION     DASVXZ010000965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4271
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1419871"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /locus_tag="VF788_20230"
     CDS             complement(<1..740)
                     /locus_tag="VF788_20230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018682450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA containing protein"
                     /protein_id="HEX8936458.1"
                     /translation="MTNIAATQSFDRMRSMLVRAAEIRDSEQQQIFDALDEIHARLAP
                     LESLGSVRKRLSEMPDRTEVSVLAERIDEALSKLEAQDGAIAALGRAVESIIDKLAKP
                     FAELGGRLDGMAGRFEGVAGRMDGLEDRIAGLHKRIDDVDHHLDRQDTRVDGLPAAIH
                     GPVREQLGAAETGFRSRLDEVDKGLQESLAGALESLTHRLDVLSSRLDAMEEGVGGRF
                     GSVSERLGALDGALAHRPDGDSLFSLIR"
     gene            complement(853..2073)
                     /locus_tag="VF788_20235"
     CDS             complement(853..2073)
                     /locus_tag="VF788_20235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017986782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein"
                     /protein_id="HEX8936459.1"
                     /translation="MAADIVPIELSVTVGDLVTLWAPRWREGDEEWEAFLGDDDNLFA
                     FPDVAALVAFVRTAGEHDLVDHPAWPLVRRLPAPDLRPAEANRYDLVGVPELVAQTPD
                     TWVIGELADVVSIVRSLAEVCGLDLVHEVLESTPGFSMLEGGALAFGGREGGRHWDAL
                     CEVIAGRWDEVIDAVDSVVRSPDVDAEALQIAMTELSEAQAVDQELRAAPAADQSTKT
                     GGDPALAFWSEVGIDPIRIISDLGEHYTLRCYLDDAPVFLGRNGRIDAFTSPRALTRH
                     LLEHPEGHDLDAVSTWPQVTKRAADRELAVAVDEGNNYVLASLADDLAGGPETVDPGQ
                     LELAVELITDAEQWAGSDAADKALISSEPLGWLVSFLVRPDPTRLAPSPPFDAEVAAW
                     RLLVGAFEDRLHVH"
     gene            complement(2131..2724)
                     /locus_tag="VF788_20240"
     CDS             complement(2131..2724)
                     /locus_tag="VF788_20240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020421823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8936460.1"
                     /translation="MARPKLHDDALRIRLLDTAGALLTAEGPDSLSLRRLAAESGTST
                     SAVYALFGGKPGILRELFIEAFTRFAAHLDTVTSSDDPLADLIALGHAYRASALADPH
                     LYAVMFGSPVPGFKPAPDDYAHAEATFAPLLDMVRKAIAAGLLVDADPGLIATALWAN
                     VHGLVSLELRGAIPSRAVPPGELFETAICANLAGWRP"
     gene            2784..4241
                     /locus_tag="VF788_20245"
     CDS             2784..4241
                     /locus_tag="VF788_20245"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX8936461.1"
                     /translation="MSHSPERGQLSEIRPRAGDGGQALVIGGSMAGLLAARVLASHFE
                     RVTLVERDRLPDGSDNRKGVPQGRMLHAMLPRGQRIMERLFPGYGHELEAAGAVALSM
                     PTDALVLTPVGWLDRRATGWPFVSASRPLFEGTLRRRLRELPGLTILDRHEVTSLLTS
                     PDRREVTGIVLRPLDDPGGIRELAADLVVDASGRGSRAPVWLCEAGYPKLTTTHVDPN
                     IAYASRIYRIPQDFRGDWQMVMLASQPPSMPRTGYLMPIEDGQWMVALMGAAGQHPPT
                     DEDGFTAFARSLRHPVIADALAAAEPVTPIRGYRGTANRLYHYERMTRRPERFVIMGD
                     AVCAFNPIYGQGMSTAAVAAETLDVCLRAQRAQRPAGNLDGLAGRFQRRLALRNAEPW
                     MLSTGEDLRFPTTTGMNVSLAMRILHRYLDWLLPVAIRDLRIAETYIQVFGMLERPAA
                     LFAPWILAAAARARRDERSSSSSSAPPARPLARVS"
BASE COUNT          674 a         1510 c         1417 g          670 t
ORIGIN      
        1 cttcggatca ggctgaacag ggagtctccg tcggggcggt gggccagcgc tccatccagt
       61 gctcccagcc gctcgctgac tgagccgaac cggccaccga caccctcttc catcgcatcc
      121 agtcggctgg acagcacgtc cagccgatgg gtgagggact ccagtgcgcc cgccagcgat
      181 tcctgcagac ccttgtcgac ctcgtccagc cggctccgga acccggtctc ggcggcgccg
      241 agctgctcgc ggaccggccc atgaatggcg gcgggcaacc cgtcgaccct ggtgtcctgg
      301 cgatccaggt ggtgatctac atcatcgatc cgcttgtgca gtccagcgat ccggtcctcc
      361 aggccgtcca tccggccggc gaccccctcg aaacggcccg ccatcccgtc gaggcgccca
      421 ccgagctcag cgaatggctt ggccagcttg tcgatgatcg actcgacggc gcggcccagc
      481 gcggcgatcg caccgtcttg agcttcgagt ttcgacagcg cctcatcgat ccgttcggcg
      541 agcacgctga cctcggtacg atcgggcatc tccgacaagc gcttgcgcac cgagcccaac
      601 gactccaggg gagccaaccg ggcgtgaatc tcgtccagcg cgtcgaagat ctgctgctgc
      661 tcgctgtcgc ggatctcggc ggcacgcacg agcatgctgc gcatccgatc gaaggattgc
      721 gtcgctgcga tgttggtcac ggccttggcc ttcgctaggg ggcggaggga tcctggtgcg
      781 ggcggatcct agctatcccg gcgggcgtgg tcacaaccgg gagaccacgc tgcgcggtac
      841 tacccggacg gctcagtgca cgtgcaaccg gtcttcgaaa gctccgacca ggagccgcca
      901 ggcggccacc tcggcgtcga aaggcgggct gggtgccagg cgggtgggat ccggccggac
      961 caggaaggag accagccagc ccagcggctc cgagctgatc aatgccttgt ccgcggcgtc
     1021 cgatccggcc cactgctccg catcggtgat cagttcgact gccagctcga gttgcccggg
     1081 gtccaccgtc tcggggcccc cggcgaggtc gtcagccagg ctggctagca cgtagttgtt
     1141 gccttcatcg accgccaccg ccagctcgcg atcggccgcc cgcttcgtga cctgcggcca
     1201 ggtggatacc gcgtcgagat cgtgtccctc gggatgttca agcaggtggc gggtcagggc
     1261 gcgtggcgag gtgaaggcgt cgattcggcc gttgcggccc aggaataccg gtgcgtcgtc
     1321 gaggtaacag cgcagggtgt agtgctcgcc cagatcactg atgatccgga tcgggtcgat
     1381 gccgacctcc gaccagaacg ccagtgcggg atcaccgccg gtcttggtgc tctggtcggc
     1441 ggccggagcc gctcgcagct cctggtcgac cgcctgcgcc tcggacagtt cggtcatcgc
     1501 gatctgcagc gcttcggcgt cgacgtcggg actgcgcacg acgctgtcca ccgcgtcgat
     1561 cacttcgtcc caccgccccg cgatcacctc gcacaacgcg tcccaatgcc gccccccctc
     1621 ccggccaccg aaggccaggg caccgccctc gagcatgctg aacccggggg tggactccag
     1681 cacctcgtgc accaggtcca agccgcacac ctcggccagc gagcggacta tcgacaccac
     1741 atcagcgagc tcaccgatca cccaggtgtc cggtgtctgc gcgaccagct cgggcacgcc
     1801 caccaggtcg taacggttgg cttccgcagg ccgcaggtcg ggcgctggca accgccttac
     1861 cagcggccag gccgggtggt cgacgaggtc atgctcgccg gcggtacgca cgaaggccac
     1921 cagcgccgcg acgtcgggga acgcgaacag attgtcgtcg tcgccgagga atgcctccca
     1981 ttcctcgtct ccctcacgcc agcggggcgc ccacagcgtc accaggtcac ccacggtcac
     2041 cgagagctcg atcggcacaa tgtccgcagc catgcgcggc agcctacgcc gcccgtgagt
     2101 ggcattcggt gctatagcac cgaatgccac tcacgggcgc caacctgcaa ggttggcgca
     2161 aatcgcggtc tcgaacagct caccgggagg caccgccctg gacgggattg cgccgcggag
     2221 ctccagagac accaggccgt gcacgttggc ccacagcgcg gtggcgatca gaccagggtc
     2281 ggcgtcgacc aggagtcccg ccgcgatcgc cttgcgcacc atgtccagca agggggcgaa
     2341 ggtggcttca gcgtgcgcgt aatcgtccgg agctggcttg aagccgggta ccggcgaccc
     2401 gaacatcacc gcgtacaggt gagggtccgc cagcgcgctg gcccggtagg cgtgacccag
     2461 tgcgatgagg tcggccagcg ggtcatccga ggatgtcacc gtgtccagat gggcggcgaa
     2521 cctggtgaac gcctcgatga acagttcccg aaggatgccg ggcttgccgc cgaacaaggc
     2581 gtacaccgca ctggtcgagg tgcccgattc ggccgccagc ctgcgtaggc tcaacgagtc
     2641 cgggccctcg gcggtgagga gcgcacccgc ggtgtcgagc aggcggatcc gcagcgcatc
     2701 gtcgtgcaac ttgggtcggg ccacttgaca ataatatcgc aacagcgttc tataacagcg
     2761 ttacgcaagg tggggaggcg ttcatgagcc attcgcccga gcgcggccag ctgtcggaga
     2821 tccgccctcg tgccggtgac ggcggtcagg ccctggtgat cggcggcagc atggccggcc
     2881 tgctggccgc gcgggtgctc gccagccact tcgagcgggt gacactggtt gagcgtgacc
     2941 gcctaccgga cggctcggac aaccgcaagg gtgtcccaca ggggcgcatg ctgcacgcga
     3001 tgctgccccg aggccagcgg atcatggaac ggctgttccc cggttacggc cacgagctcg
     3061 aggctgctgg tgcggtggcg ctgagcatgc ccaccgacgc gctggtactg accccggtcg
     3121 gctggctgga ccggcgggct accggctggc cgttcgtgtc ggccagccga cccctgtttg
     3181 aggggacgct gcgccggagg ctgcgcgagc tgccgggcct gacgatcctc gaccgccacg
     3241 aagtgacctc actgctgacc tcgccggacc gccgcgaggt caccggcatc gtgctccgcc
     3301 cgctcgatga ccccggtggc attcgcgagc tggccgcaga cctcgtggtc gacgccagcg
     3361 gccgcggctc ccgagccccg gtctggctct gcgaagccgg ttacccgaag ctcaccacga
     3421 cacacgtcga cccgaacatc gcctatgcct cccggatcta ccgcatcccg caggatttcc
     3481 gcggggactg gcagatggtg atgctcgcct cgcagccgcc gtcgatgccg cgcaccgggt
     3541 atctcatgcc tatcgaggac ggtcagtgga tggttgcgct gatgggtgcc gccggtcagc
     3601 acccaccgac cgacgaggac ggcttcaccg ccttcgcccg cagcctgcgc catccggtca
     3661 tcgccgacgc gctcgcggcc gccgaaccgg tcaccccgat ccgcggctac cgcggcaccg
     3721 ctaaccggct ttaccactac gagcgcatga cgcggcgccc ggagcggttc gtcatcatgg
     3781 gcgatgcggt gtgtgcgttc aacccgatct acggtcaggg catgagcacc gcggccgtcg
     3841 ccgccgagac tttggacgtc tgcctgcggg cgcagcgggc tcagcgtccc gcgggcaacc
     3901 tcgacgggct ggccgggcgt ttccagcgac ggctagcgct gcgcaacgct gaaccgtgga
     3961 tgctttcgac cggcgaggat ctgcgtttcc cgaccaccac cggcatgaac gtgagcctgg
     4021 cgatgcgaat attgcaccgc tacctcgact ggttgttacc cgtcgccatc cgcgacctgc
     4081 gtatcgccga gacgtatatc caggtgttcg gcatgctgga gcgcccagca gcactgttcg
     4141 ccccatggat cctggccgct gccgcccggg cccggcgtga tgagcgaagc tcgtcatcga
     4201 gctccgcgcc gcctgcccgg ccgctggcga gggtctcgtg agagcaccgg ccaccgtgac
     4261 agccaccgaa g
//
LOCUS       DASVXZ010000966         3348 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1511823, whole genome shotgun sequence.
ACCESSION   DASVXZ010000966 DASVXZ010000000
VERSION     DASVXZ010000966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3348
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1511823"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VF788_20250"
     CDS             complement(<1..512)
                     /locus_tag="VF788_20250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEX8936462.1"
                     /translation="MVDYDVVVVGSGFGGSVAALRLAEKGYRVGVLEAGRRFADHELP
                     TTSWQLRDFLWAPALGCYGIRRIHLLRNLVVLAGAGVGGGSLNYANTLYRPPEAFFDD
                     PQWAHLADWRPELDPHYDQAQRMLGVTTYPGHTAADEVMQQVARDMGVSSSHRPTPVG
                     VFFGRPGEET"
     gene            complement(551..1678)
                     /locus_tag="VF788_20255"
     CDS             complement(551..1678)
                     /locus_tag="VF788_20255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005461485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GuaB3 family IMP dehydrogenase-related protein"
                     /protein_id="HEX8936463.1"
                     /translation="MRDLVEIGMGRTARRAYDFDDVQIVPSRRTRSSRDVSTAWQIDA
                     YRFDIPLVTHPTDAIVSPAMAVRIGELGGLGVLNTEGLWGRHADVDKLLFRLTSAMDE
                     ADEATAIRLLQQWHAAPIRPELLTEAISQVASAGVTVAARVSPQHARDFAPELLAAGV
                     EILVVQGTIVSAEHVSRAAEPLNLVEFIASMDIPVIAGGVGDYRTAMHLMRTGAAGVI
                     VGHGAGASTSTGDVLGIGVPMATAVADAAAARRDYLDETGGRYVHVIADGGMRTSGDL
                     AKAIACGADAVMLGEPLASAVEAPGNGLYWTAAAAHPSLPRSHVTGVPEGSIGIDTLL
                     FGPSNDPSGTVNLFGALRRAMAKSGYSELKEFQKVGLTIRP"
     gene            complement(1678..3189)
                     /gene="guaB"
                     /locus_tag="VF788_20260"
     CDS             complement(1678..3189)
                     /gene="guaB"
                     /locus_tag="VF788_20260"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010316094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEX8936464.1"
                     /translation="MTSELTAPGFPSKFALLGLTFDDVLLLPAESDVMPGEVDTSTRL
                     SRNVTLRVPLVSSAMDTVTEARMAIAMARQGGMGVLHRNLPAQEQAAQVEVVKRSEAG
                     MVTDPVTCLPDDTLADVDALCARYRISGVPVTDPDGVLVGIITNRDMRFEVDHDKRVA
                     EVMTKQPLITAQVGVTAEAALGLLRRHKIEKLPIVDGHGRLRGLITVKDFVKTERYPL
                     ATKDPDGRLLVGAAIGVGEDAKKRAALLVDAGVDVLVVDTAHGHSRGVLEMISVLKAE
                     LADTVDVIGGNVATRAGAQALVDAGADAVKVGVGPGSICTTRVVAGVGVPQISAIFEA
                     DRACRPAGVPVIGDGGIQYSGDIAKAIVAGASSVMLGGLLGGTAEAPGDLILVDGKQY
                     KTYRGMGSVGAMASRGGGRSYSRDRYFADDVLSDDKLVPEGIEGRVPFRGALSLVAHQ
                     LVGGLRAAMGYAGAATIPALQAAQMVRVTSAGLKEGHPHDITMTVEAPNYAVR"
BASE COUNT          545 a         1202 c         1084 g          517 t
ORIGIN      
        1 tcagtctcct cacccgggcg gccgaagaac actcccaccg gggtgggtcg gtggctgctc
       61 gagaccccca tatcccgtgc gacctgctgc atcacctcat cggcagcggt gtgcccgggg
      121 taggtcgtca cgccgagcat ccgctgcgcc tggtcatagt ggggatcgag ctcgggccgc
      181 cagtcggcga ggtgcgccca ctgcggatcg tcgaagaacg cctctggcgg ccggtacagc
      241 gtatttgcgt agttcagcga accacccccg actccagcgc cggccagcac cacgaggttt
      301 cgcaacagat ggatgcgccg gatgccgtag caacccaggg cgggcgccca caggaagtcc
      361 cgcaattgcc acgatgtggt gggtagctcg tggtcagcga aacgccgccc tgcctcgagc
      421 acaccgaccc ggtagccctt ctcagccaac cgcagcgccg caacgctgcc accgaatccc
      481 gagccgacca ccaccacgtc gtaatcgacc actcatgacc tcctcctacg agtcgcttga
      541 tgaccagcgc tcacgggcgg atggtgaggc cgaccttctg gaactctttg agttcggagt
      601 agccggactt ggccatggcg cggcgcagcg cgccgaagag gttcacggtg ccgctggggt
      661 cattcgacgg gccgaacagc agggtgtcga tgccgatcga gccttcgggg acaccggtga
      721 cgtggctgcg cggtaacgac gggtgcgccg cggcggcggt ccagtacagg ccgttgccgg
      781 gtgcctccac cgcactggcg agcggttccc cgagcatcac ggcgtccgct ccgcaggcga
      841 tcgccttagc caggtcaccg ctggtccgca tgccgccgtc cgcgatcacg tgcacatagc
      901 gcccaccggt ctcatcgagg taatcccgcc gggcggcagc cgcgtcggcg accgcggtgg
      961 ccatcggtac cccgatgccg agcacatcac ccgtggacgt actcgctccc gcaccgtgac
     1021 cgacgatcac accagcggca ccggtgcgca tcaagtgcat cgccgtgcgg tagtccccca
     1081 cccccccggc gatgaccggg atgtccatcg acgcgatgaa ctccaccagg ttgagcggct
     1141 ccgcagcacg ggacacatgc tcagccgaaa cgatggtgcc ctgcacgacg aggatctcga
     1201 cgccggcggc gagcagctcg ggggcgaagt cccgggcgtg ctgcgggctg acccgggcgg
     1261 cgaccgtcac cccggcggag gcgacctggc tgatcgcctc ggtgagcagc tcgggccgga
     1321 tcggcgctgc gtgccactgc tggagtaacc gaatcgccgt tgcctcgtcg gcctcatcca
     1381 tcgcggaggt aagccggaac agcagcttgt cgacgtctgc gtggcgaccc cacaatccct
     1441 cggtgttgag cactcccaag ccgcccaact caccgatccg gaccgccatc gcgggcgaga
     1501 cgatcgcgtc ggtgggatgc gttaccagcg ggatgtcgaa tcgatatgcg tcgatctgcc
     1561 aggcggtgga cacatcccgc gacgatcggg tgcgccggga gggcacgatc tggacgtcgt
     1621 cgaagtcgta ggcgcggcgg gcagtgcggc ccatgccgat ctccaccagg tcacgcatca
     1681 gcgcaccgcg taattcgggg cctccaccgt catggtgatg tcgtgcggat ggccctcctt
     1741 caaacctgcc gaggtgaccc gtaccatctg cgcggcctgc aacgccggga ttgtcgcggc
     1801 gcccgcgtag cccatcgccg cccgcaggcc accgaccagc tggtgggcta ccagcgacag
     1861 cgcgccccgg aagggaaccc gtccctcgat gccctcgggt accagcttgt cgtcggagag
     1921 cacgtcgtcg gcgaagtagc ggtctcggga gtacgaccgg ccgccaccgc gggaggccat
     1981 ggcgcccacc gaacccatcc ctcgataggt tttgtactgc ttgccgtcga ccaggatcag
     2041 gtcgcccggc gcctccgcag tgccgcccag caggccgccc agcatcactg agctggcccc
     2101 cgccacgatg gccttggcga tgtccccgga gtattggatc ccaccgtcgc cgatcaccgg
     2161 aacacccgct ggacggcacg cccggtcggc ctcaaagatg gcgctgatct gcggcactcc
     2221 caccccggcc acgaccctgg tggtgcagat ggagccaggg cccaccccaa ccttgacggc
     2281 gtccgctccg gcgtcgacca gcgcctgcgc gccggcgcgg gtggccacgt tgccaccgat
     2341 gacatcgacg gtgtcggcga gctcggcctt cagcacgctg atcatttcca gcacgccacg
     2401 ggaatggccg tgcgcggtgt ccacaacaag cacgtcgacg ccggcatcga ccagcagcgc
     2461 ggcccgcttc ttggcatcct caccgacccc gatggcagcg ccgaccagca gccgcccatc
     2521 cgggtccttg gtggccagcg ggtagcgctc ggtcttgacg aagtccttga cggtgatcag
     2581 cccgcggagc ctgccatgcc cgtcgacaat cggtagcttc tcgatcttgt gccggcgcag
     2641 caggcccagc gccgcctccg cggtgactcc cacctgcgcg gtgatcagcg gctgcttggt
     2701 catcacctcg gcgacccgtt tatcgtggtc gacctcgaag cgcatgtccc ggttggtgat
     2761 gatgccaacc agcacgccgt ccgggtcggt gaccgggact ccggagatcc ggtagcgggc
     2821 acacagcgcg tcgacgtcgg caagggtgtc gtcgggcaag cacgtcaccg ggtcggtcac
     2881 catgccggcc tccgaccgct tgacgacctc gacctgtgcc gcctgctcct gcgcgggcag
     2941 gttgcggtgc aacaccccca tcccaccttg acgggccatc gcgatggcca tccgcgcctc
     3001 agtcaccgtg tccatcgcgg aggagaccag cggcacccgc agtgtgacgt tccgggacag
     3061 cctggtcgac gtgtccacct ccccgggcat cacgtcggac tcggcgggca gcagcagaac
     3121 atcatcgaaa gtcagaccga gcagcgcaaa cttcgacgga aagccgggcg cggtgagctc
     3181 gctggtcatg tgacgatggt atccgcccca gctagcgttt cctctgtgtc cgtgacccgg
     3241 ggtgtgtcca gcacggaagt catccggatc attcatcggc tatccgcccg gggccatccg
     3301 cccggggcta tcggccaggc gggtaccgtg ccagccgtgg cgcatgac
//
LOCUS       DASVXZ010000967         3972 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1065265, whole genome shotgun sequence.
ACCESSION   DASVXZ010000967 DASVXZ010000000
VERSION     DASVXZ010000967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1065265"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1037..>3972
                     /locus_tag="VF788_20265"
     CDS             1037..>3972
                     /locus_tag="VF788_20265"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8936465.1"
                     /translation="MAAPAAPEPPGPDDERVERPSVDELLNRAVKRRICVIIGAAGWG
                     KTAAVATWSRGRPTAWLGQEDHDGDVNSLLASLVEALRTYVSAATPGQDAAVDPYQAG
                     SSVAALCTWLHGLVSEDLVLVLDDLHWLQPDSDAAAAVESLCHRVPDWLHLVLISRRE
                     LPFSLQRQWGRGLVMEIHAPDLAFDVADVEALLRKTVGEDPPGLSRRVWEQTGGWPAA
                     VHCAVEMLRVVGVDQRLGTLGALCRPGERFHGYLAEEVIGAAPEWVQQQLRMLAIVGQ
                     AKSTTETGGFTDPTGLLAELARQGLVRRIDGDSGWVLVRPLQDFFDHEVAPTSGERKA
                     LYLAAAHDYLERGAPAEALWHLLAGGDYAACASLLVDHGNAMVARGQVDAVLEAAELP
                     PEYLDDPRIRQLLGHAHQVRGDWAQALQHFQCAGLDHNELEPALSWRAGMIAFTQGEF
                     AEVHALMRRTRLDRENTLDETRMLVLVASAFRMAGDMASSRRMAARARAAARGCDDPR
                     AWSGVHLVFALLGAADGEWRLADAQCINARRSAEAGDDLLQLAWTWTLRAFHQFEGGA
                     PRHALADSEVALRLSERCKNPFFIAHALTTRGRARVRLGILDEAARDFATAIDLFQRT
                     GSRILAWSLSALGDLHRTRGQLMRARTAYEEALALAEPYHDVFGTSSALIGLARVTAA
                     DDPKLARELADRAVAVGEGLRKVPSLLARGWVELIDGDRQGALADADRAAVAARQRRD
                     HPGLAEAITLHALAARDPANATSLGEAINIWQETGCCLEEAATRIVAARIDAPVPDLD
                     DHLADQLLRDHGVDVDSRQAAGPLGVLVRSAPAVFIQTLGLFRINHNGLPVPNIAGKA
                     KKARDLLKILIARRRPTLRDQLMELLWPGTKPAVSSNRLSVLLSTVRELLQARPGDED
                     PLITTDGTVSLNPVQVHVDVEDFLSQATAALDAHRIGAPDATARLVAAVTAHTGDFLE
                     DDVYQE"
BASE COUNT          746 a         1171 c         1297 g          758 t
ORIGIN      
        1 atcacatcgg ctgtcgacgg cgatcaggta agatcacggc ttcttgtcaa cagtgatacg
       61 tgcattccac taggtctcct actgtcctgc catctccacg catccttcgt ctccgaggga
      121 tatttcttcg tgttttaaca acaggacgga agcctagaag ggcggcccac tgatgatctt
      181 agctgtagtc taaccagcgt ttaaaaaaat ccatgtcggc atctcatcgc aggtccgcga
      241 agagatatac cgagaacgaa gtatgcgtca actacatcat atgaagtatg cagggatggt
      301 ttctacactt atgggatgac ggtggcctgc cggccgagcc gagcaccacg gcacgctcgt
      361 cgtcatgctg agcggatcag cttggcgatc catgccgacc gtgtcgtgct cacggacggg
      421 tcgacgcgat gttcgagcag ctccaactct cggggcgaga cgtccgagct cggtgaagac
      481 cgcagatctc taacacccca tggccatcac actatggtgg taagccttca ccaaagggtg
      541 gtcaatatca ccctatggat gtagaagcac gtttctccta ctccatttga tgtacatgtc
      601 ctacactcac aagggtaggt agaagatgag ctgtgcagat gatgaccgac tatccgctac
      661 tgagcaggct caggttacaa acaggcaaaa tctactcaaa caactacaaa gatggctcca
      721 gcaggcagcg tttgatcaac ctgctaggtg aagtcacgga gtccaaaagc actccaggcg
      781 acatcagacg gggcgagagc catctgcggg tagggagatg ccatggctca gcagcggccg
      841 gtccaggcct atccaagtac ctttgcaccg atcgccgtcg cggaacaacg aggcgatcac
      901 cgacgtgccc tcgcagggca gtgatatcgc tgcgcctggg aacggactcg ctgtggggcg
      961 aacaagagtt cagttgcaaa accaggccta agcggagtgc acctaaagaa cacgagacca
     1021 atggggggcg atagccgtgg cggcgcctgc tgcgcccgag ccgcccggcc cagacgatga
     1081 gcgagtcgag cgtccctcgg ttgacgagct gttgaaccgc gccgttaagc gccggatctg
     1141 tgtgatcatc ggcgcagcgg gctggggcaa gacggcagcg gtggcgacgt ggtcacgcgg
     1201 tcgtccgacc gcgtggctgg gacaagagga ccacgacggc gacgtgaaca gcctgctggc
     1261 gagcctggtc gaagcattgc ggacctacgt gtcagcggcc acgccgggcc aggatgcagc
     1321 agtagatcca taccaggcag gatcctcggt ggcggccttg tgcacttggt tgcacggtct
     1381 cgtgagcgaa gacctcgttc ttgttctgga tgacctgcat tggctgcaac cggacagcga
     1441 tgcggcggcc gccgtggaga gtttgtgcca ccgcgtaccg gattggctgc atctggtgtt
     1501 gatctcccgg cgcgagctgc cgttttcctt gcagcggcag tggggccgtg gtcttgtcat
     1561 ggagatccac gcgcccgacc ttgccttcga cgttgccgat gtcgaggcct tgctgcgtaa
     1621 gaccgtgggc gaggatcctc caggcttgtc gagacgagtc tgggagcaga cgggtggttg
     1681 gcccgcggcc gtgcattgtg ctgtggagat gctgcgggtg gtcggggtcg atcagcgctt
     1741 gggaacgcta ggcgcgctat gccggccggg agagcgtttt catggctatc tggccgagga
     1801 ggtcatcggt gcggcacccg agtgggttca gcagcaactg cgtatgttgg cgatcgtcgg
     1861 ccaggcgaag tccacgacgg agactggggg gttcactgat ccgacgggct tgctcgccga
     1921 actggctcgg cagggactcg tgcggcgcat cgatggagat tctggctggg tgctggtgcg
     1981 tccgttgcag gacttctttg accatgaagt agcgccaact tccggcgaac gcaaagcgct
     2041 gtacctggcg gcggcccatg actacctcga gcggggggca ccggctgagg ctctatggca
     2101 cttgctagca ggcggcgatt atgccgcgtg tgcgtcgctg ctagtggatc atggtaatgc
     2161 gatggtggcg agaggccaag ttgacgccgt attggaggcc gccgagctgc cgcccgagta
     2221 cctcgacgat ccgaggatcc gccaacttct tggacatgcg caccaggtgc gaggggactg
     2281 ggcacaggcc ctgcaacact tccagtgcgc aggactcgac cataacgagc tggagcccgc
     2341 gctgtcctgg cgggccggca tgatcgcttt cactcagggt gagttcgccg aagtccacgc
     2401 gttgatgcgg cgaaccaggc tggaccggga gaacacgctc gacgagaccc ggatgctagt
     2461 gctggttgca agcgccttcc ggatggctgg tgacatggcg agttcacgga ggatggcggc
     2521 tagagcccgc gcagcggccc gtgggtgcga cgatccgcgc gcgtggtccg gagtccactt
     2581 ggtcttcgcg ttgctgggag ctgccgacgg tgagtggcgg ctggccgatg cccagtgcat
     2641 caacgcccgg cgcagcgctg aagcgggcga tgacctgctc cagttggcgt ggacatggac
     2701 tctccgagca ttccaccaat ttgaaggggg tgcgccgcga catgcgctgg ccgattccga
     2761 ggttgcgttg agactcagcg agcgatgtaa gaacccgttc ttcatcgcgc atgcactgac
     2821 cacccgcggc cgtgcgcgcg ttcgcctcgg gatattggac gaggcagcgc gcgacttcgc
     2881 caccgcgatc gacctcttcc agcgcaccgg ctcgcgaatc ttggcgtggt ctctcagcgc
     2941 tcttggtgac ttgcatcgga cccggggtca gttgatgcgc gctcggacgg catacgagga
     3001 agctctggcc cttgcggagc cgtatcacga cgtgttcggc acgagttcgg cgctcatcgg
     3061 gctcgcgcgc gtcaccgcgg ccgatgatcc gaagctcgcc cgggagcttg cggaccgggc
     3121 tgtggctgtg ggggagggac ttcgtaaggt cccgtcactt ctggcccgcg gctgggttga
     3181 gctgatcgac ggtgaccggc agggtgcctt agcggatgcc gatcgagctg ccgtggccgc
     3241 gcggcaacgg cgagaccacc caggactggc cgaggcaatc actctccatg cgctggccgc
     3301 ccgcgatccc gcgaatgcca cctccttggg ggaggcgatc aacatatggc aggaaacggg
     3361 ctgttgtctg gaggaagccg caaccagaat cgtggccgct cgcatcgatg cgcccgttcc
     3421 tgacctcgac gaccacctcg ccgaccagct gctccgggat cacggggtcg atgtcgactc
     3481 gcggcaggct gctggaccgc tgggtgtgct ggtccgttcc gcgcctgcgg tgttcattca
     3541 gaccctcggc ttgttccgga taaaccacaa cgggctgccg gttccaaaca tcgcaggcaa
     3601 ggcgaaaaaa gcccgagacc tgttgaagat cctgatcgcg cggcgccgtc cgacactccg
     3661 tgatcaactg atggaactgt tgtggccagg gacgaaaccg gccgtatcca gcaaccggct
     3721 gtccgtattg ctgtccacag tccgcgagct cctgcaagct cgccctggcg atgaggaccc
     3781 attaataact accgatggca cagtctcgtt gaatcccgtc caagtgcacg tcgacgtcga
     3841 ggattttctt tctcaagcca ctgccgctct cgatgcccac cggatagggg caccggatgc
     3901 caccgcccga cttgtcgcag ctgttactgc ccatacgggg gacttcctcg aagacgatgt
     3961 gtaccaagag tg
//
LOCUS       DASVXZ010000968         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1325732, whole genome shotgun sequence.
ACCESSION   DASVXZ010000968 DASVXZ010000000
VERSION     DASVXZ010000968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1325732"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..998)
                     /locus_tag="VF788_20270"
     CDS             complement(174..998)
                     /locus_tag="VF788_20270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011558697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8936466.1"
                     /translation="MGTITTTDGTEIYYKDWGSGQPIVFSHGWPLSADDWDTQMLFFL
                     QHGYRVIAHDRRGHGRSSQTSDGHDMDHYADDLAAVTAHLDLTDAVHVGHSTGGGEVV
                     RYLARHGESRVAKAAIVSAVPPLMVQTETNPGGLPKEVFDGFQAQLAANRSQFYRDLA
                     SGPFYGFNRPGVESSEAIIENWWRQGMMGGAKAHYDGIVAFSQTDFTEDLKKITVPVL
                     VMHGDDDQIVPYADSAPLSAKLLQNATLKTYEGFPHGMPTTQAETINADLLAFIRA"
     gene            1233..>1518
                     /locus_tag="VF788_20275"
     CDS             1233..>1518
                     /locus_tag="VF788_20275"
                     /inference="COORDINATES: protein motif:HMM:NF024940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8936467.1"
                     /translation="MAKKGRRAANEERLIAVQMHENGMSAEQIAEVMNVGRSTVFDWI
                     DKYRKGGLAAISTKIASGRPTTLDDSEMVRLYTMINGKDPRAYSFGVALWT"
BASE COUNT          300 a          433 c          468 g          317 t
ORIGIN      
        1 ccaacctacc cgattccctg gctggaccct agatcgaacc agcccccgcc tccgcgaaca
       61 ctacgcacaa ccccggggcc gggaccggcc cgtttcgccc gagaggtcgc gtcacatccg
      121 agagctccga aagggccacc caccgctggt gaactgatga acggctctcg aggtcacgct
      181 cttatgaacg ccagtagatc ggcgttgatc gtctccgctt gggtggtggg catgccgtgc
      241 gggaagcctt cgtaggtctt caatgtcgcg ttctgcagaa gcttcgccga taagggtgcg
      301 gagtctgcgt agggcacgat ctggtcgtcg tcgccgtgca tcaccaggac cggcacggtg
      361 atcttcttca ggtcttcggt gaaatcggtt tgggagaagg cgacgatgcc gtcataatgc
      421 gccttcgcac cacccatcat gccttggcgc caccagtttt cgatgatggc ctccgaggat
      481 tccacgcccg gccggttgaa accgtagaac ggccctgacg ccaggtcgcg ataaaactgt
      541 gagcgattgg ccgcgagttg cgcctgaaac ccatcgaaga cctctttggg aagaccaccc
      601 ggattggtct cggtttggac catcagcggt ggtactgcgc tgacgatcgc cgccttagcc
      661 actcggcttt caccatggcg ggctagatag cggaccactt caccgccacc ggtcgaatga
      721 cccacgtgca cggcgtcggt cagatccaga tgcgcggtca ccgccgccag gtcatcggca
      781 tagtggtcca tgtcgtggcc gtcactcgtt tggctggacc gtccgtggcc gcgccggtca
      841 tgggcgatga cccgatagcc gtgctgcaga aagaacaaca tctgggtgtc ccagtcgtcc
      901 gctgacagcg gccagccgtg actgaacacg atcggctgac ccgagcccca gtccttgtag
      961 tagatctccg tgccgtcggt ggtggtgatg gtgcccatgc gaggccttcc ttcaaagttc
     1021 gtggcatgac gcggagggag aaactgccag gctgcgtact gattacaccg caataacttc
     1081 ttttcgcgcc cggtattcac ccggttgcgg tgcatcggtc gaggtttgta tgcatacgcg
     1141 aaagtggtgg ggagtctcgt ctgtcgcaca gcctgtacta atcagaacat aagtttgtag
     1201 acattgtgtt gatagtgtgc gatactctac gcgtggcgaa gaaaggcaga agagctgcca
     1261 acgaagagcg gttgatcgcg gtgcagatgc acgaaaatgg gatgtccgct gagcagatcg
     1321 ctgaggtcat gaacgtgggc aggtctactg tttttgattg gattgataag tatcgcaagg
     1381 gtgggttggc cgcgatatcg acgaagattg cctcaggtcg gccgacgacg ctggatgaca
     1441 gcgagatggt ccgtctctat acgatgatca acggaaaaga cccgcgagcc tacagtttcg
     1501 gtgtggcgtt gtggaccc
//
LOCUS       DASVXZ010000969         2656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1068430, whole genome shotgun sequence.
ACCESSION   DASVXZ010000969 DASVXZ010000000
VERSION     DASVXZ010000969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068430"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..468
                     /locus_tag="VF788_20280"
     CDS             73..468
                     /locus_tag="VF788_20280"
                     /inference="COORDINATES: protein motif:HMM:NF017470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HEX8936468.1"
                     /translation="MEWYLKVLRQYADFTGRARRKEYWMFTLVSLIISVVLAILDGML
                     GLESNVGVFTFGLLGELYSLAVLLPTLAVGARRLHDIGRCGWWLLLGIIPVIGWIVLI
                     VFFATDGQRQPNAYGPNPKTVPGETALVA"
     gene            1233..2468
                     /locus_tag="VF788_20285"
     CDS             1233..2468
                     /locus_tag="VF788_20285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEX8936469.1"
                     /translation="MDSSSLIDEIIRQGARRMLAEALQSEVDAYLDRFVAERDERGRR
                     LVVRNGSHQPREVLTSAGAVEVVVPRVNDRRVDPDTGERQRFSSAILPPWVRKTPKIN
                     EVLPLLYLHGLSSGDFVPALGQFLGSTAGLSASVITKLTETWKVEARAFSQRDLSGVD
                     YVYLWVDGIHVNIRLEEHKLCLLVMIGVRADGRKELVALADGYRESVESWADLLRDCA
                     RRGMRAPVLAVGDGALGFWGALREVFPQSRAQRCWFHKIANVLGALPKSTHPGAKKAL
                     AEIWNAEDKKHALDAVSRFTAAYGAKFPKAVAKITNDLDELLAFYDYPAEHWIHLRTT
                     NPIESTFATVRHRSKITKGPGSRAAGLAMAFKLIEAAQARWRAVNAPHLVALVRAGAV
                     FQDGKLIERPDEQPQPEAA"
BASE COUNT          471 a          815 c          889 g          481 t
ORIGIN      
        1 tttcgcctgt ttccgcctac gcaacagtgc cggcatgggt gacagtgtgc ttaccgagga
       61 ccggagtcga ccatggagtg gtatctgaag gtgcttcgcc agtacgccga tttcaccggc
      121 cgtgcgcggc gcaaggagta ctggatgttc acgctggtca gcctgattat ctccgtggtg
      181 ctggcgatcc tcgacggcat gctcggcctt gagagcaacg tcggggtgtt cacctttggc
      241 ctgctcgggg agctgtactc gctggcggtg ttgctgccaa ctttagctgt tggcgcccgc
      301 cggttacacg acatcggccg ctgtgggtgg tggctgttgc tcggcatcat cccagtgatt
      361 ggctggatcg tactcatcgt gtttttcgcc accgacggcc aacgacagcc caacgcctac
      421 ggaccaaacc caaagaccgt tccgggtgag actgccctcg tcgcctaaca acgacgcctg
      481 ccccgtccac cccttgctcg ctcaccggcg gtgagacgcc gtcaggacag atcacggtca
      541 cccgacacac cctgatcatc aagaactacc cctaacccga cgttcgacgg ctcggcgacg
      601 ccccgagtgt cgatcttgtg tgttggggtc gcgtgagcca ggtaacccgg cgattgaact
      661 gcgtgatgtt gctgcggcgt tcaccggtgg ggcgcgtgcg cctacccata agctcagaag
      721 ggccagaggc ctggctacga gcagacgaca gtagtgacga caacgcagcc gacaatccag
      781 caccagcagc accgtgtgaa agctggttgc ggcgcagatt gaaggatggc gaggggagtt
      841 gcgtgcttct gggggtcagg ggtcgcaggt gcaaaatcct gtcgtcccga cggtcatagg
      901 gccaggtcag aggcttgctt gctttggtga gtgggctctg atgtctgtcc ggtggtcccc
      961 aatctggcga tagctggtgc gattgaccgt tggtctagcg cggtactgct ctagcagcgg
     1021 agcaccgcgg gaggaacgca cacggagcgc atgtgggtgt gtagagcaat gcttgaaacc
     1081 tgtggatgac gaggagggtc gtaccctccc gatcatcttg taggacctca agcaaggccg
     1141 gcgcgccaac gccggtcggg aaggtacgac ctgtgctgac cgtagtctcc ggagagttcg
     1201 atggccgtga cgactgtgcc gctgcgggcg gtgtggacag ctcgtcgttg atcgatgaga
     1261 tcatccgcca gggtgctcgg cggatgctcg ccgaggcgct gcagtccgag gtggatgcct
     1321 acctcgatcg gttcgtcgcc gagcgcgacg agcgaggccg gcggctggtg gtgcgcaacg
     1381 gtagccatca gccccgcgag gtcctgacga gcgcgggggc ggtggaagtc gtcgtgccgc
     1441 gggtcaacga ccgacgggtg gatcccgaca ccggcgaacg ccagcggttc tcctcggcga
     1501 tcctgccgcc ctgggtgcgc aagaccccga agatcaacga ggtgctgccg ctgctgtatc
     1561 tgcacgggtt gtcctcgggg gacttcgtgc cggcgctggg tcagttcctg ggctccacgg
     1621 ccggattgtc cgcgtcggtg atcacgaagc tgaccgagac ctggaaggtc gaggcgcgtg
     1681 ccttctcgca gcgggatctg tccggggtgg actacgtcta cctgtgggtc gacggaatcc
     1741 atgtcaacat ccgcctcgag gagcacaagt tgtgcctgct ggtgatgatc ggcgtgcgcg
     1801 ccgacggccg caaggagctc gtcgccctgg ccgacgggta ccgggagtcg gtcgagtcct
     1861 gggcggatct tctgcgcgac tgcgcacggc gcgggatgcg cgccccagtg ctcgcggtcg
     1921 gtgacggcgc gctcgggttc tggggcgcgc tgcgcgaggt gttcccgcag tccagagcgc
     1981 agcgatgctg gtttcacaag atcgcgaacg tgctcggggc gctgccgaag agcacgcatc
     2041 cgggggcgaa gaaggcgctg gcggagatct ggaacgccga ggacaaaaag catgccctcg
     2101 acgccgtgag ccggttcacc gcggcctacg gggccaagtt ccccaaggcg gtcgcgaaga
     2161 tcaccaacga tctcgacgag ctgctcgcct tctacgacta ccccgccgaa cactggatcc
     2221 atctccgcac gaccaatccc atcgaatcta ctttcgccac ggtcagacac cgaagcaaga
     2281 tcaccaaggg gccgggctcg cgagcggctg ggctggcgat ggcattcaag ctcatcgagg
     2341 ccgcccaggc ccgctggcga gcggtcaacg caccccacct ggtcgccctc gtccgcgccg
     2401 gagccgtgtt ccaggacggc aaactcatag aacgacccga cgaacaaccc caaccagaag
     2461 ccgcctaaaa gatcttcatc cacaggtatt gactattgct cagtgcgacg tgggaggtcg
     2521 tcatggcccc ggttacaggg cgagcgccag gagaaggcaa ttcagcccga tgatcagtag
     2581 tgccgccaag ccaccggtca cgctggtgag cctccggttg acgaatgagc ccatcacgtc
     2641 ctctcgggca gtgatg
//
LOCUS       DASVXZ010000970         2819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1068805, whole genome shotgun sequence.
ACCESSION   DASVXZ010000970 DASVXZ010000000
VERSION     DASVXZ010000970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068805"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VF788_20290"
     CDS             complement(<1..504)
                     /locus_tag="VF788_20290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013228839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8936470.1"
                     /translation="MTREDLGEWESELEGVLARIRPLFYRTESKKHAEQYVRGLLSPL
                     ARKNGWTMAEHAGEAGPAALQRLLNLSPWDADALLEINREYAMEYLADPGAILVADPT
                     GFAKKGTKSVGVQRQYSGTLGRIDNCQIATFLAYVTSGRDRALLDRRLYMPEKSWMAD
                     QARCAQAG"
     gene            854..2467
                     /locus_tag="VF788_20295"
     CDS             854..2467
                     /locus_tag="VF788_20295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936471.1"
                     /translation="MGARVVTVNEVLDGHVALDIQCLDRIYLNAYVPKLQSSAQVAAF
                     LSGHLGYPFPSPALFNQIGQRFRRAVASFAEANDIPWIKFGKDDVGGKLELMRPHLDR
                     QAATGRSGVAAIGVAQEFQRVWSAYERQTPTGAAQWWFTKADRRVSCYYFYLWDVDFG
                     PAFIKVCTYFPYPAKIWLNGHEWAKRQATQAGIGFTELSNGFATCEDPAALQEICDRL
                     GPGTIEVFVQRWLARLPLPFTDTDRDAGYWWETSMRQIETSRTLVFTAPRHARGFFEA
                     LITDNLDLGRPHNVEIIFNRRVRRDTPGTFRTAIDRRDNGGVIVNVFYKHSRIKQYLK
                     DGRAMRIETVINSPRDLGCQARLPNLDDLQTKARACNRRILDAERVGQGCVLASPAFA
                     RIAHPTVDAEGRRTPALRFGDPRVMALTGALCQTLLAATGFTNKNLRVLIAGLLGSDY
                     RPGQMTYDLRRLRLAGLIRRIEHTNRYQLTGEGIRIAVFYTKVYNRLLVPLTAADQPQ
                     APPDLRQALRTLDHHVDSYAHHARLRPAA"
BASE COUNT          521 a          974 c          825 g          499 t
ORIGIN      
        1 cccggcctgc gcgcagcggg cctggtcggc catccaggat ttctccggca tgtacaaccg
       61 gcgatcgagc agagctcgat ctcgcccgct ggtgacatag gccagaaagg tagcgatctg
      121 acagttatca atccgtccca atgttccgga gtactgccgc tgcaccccca ccgacttggt
      181 gcccttcttg gcgaatccag tcggatccgc caccaggatc gcgcccggat cggccagata
      241 ctccatcgca tactcacggt tgatctccag cagggcatcc gcatcccacg gcgacagatt
      301 caacaaccgc tgcaacgccg ccggccccgc ttcaccggca tgctcggcca tcgtccaccc
      361 gttcttccgg gccaacggtg acaacaatcc gcgcacgtac tgctccgcgt gcttcttcga
      421 ctccgtccgg tagaacagcg gacgaatcct cgcgagcacg ccctccaact cggattccca
      481 ctcacccaaa tcctcgcgtg tcaccgcatc atcgtacaca accggccgat tcatcgacac
      541 taccgacacg tcagaattat cgcgcgaccc aacccaacga atcgatttca acacgcggag
      601 acaggtcacc aattcgccaa agccaggaaa acacgtccac gacatcacac ctcaccagta
      661 gccgacgcga tcgaccgcca cggcccggct caccacccac gccgcagcac gtcacccaac
      721 ccccggggaa agatctggcg ctgtagtagt agtgaggcgt cgcctcggac cgtcgagtgg
      781 ggtggttgcg tcgaggctgt ccctgctggt gagtaccttc tgccctccgt agctgtggat
      841 gcggagggtg atcatgggtg cgcgggtggt gacggtcaac gaggtgcttg atggtcatgt
      901 ggcgttggac atccagtgtc tggatcggat ctatctgaac gcctacgtgc ccaagttgca
      961 gtccagtgcg caggtggcgg cgtttctgtc tgggcatctg gggtatccgt ttccctcacc
     1021 ggcgctgttc aaccagatcg gtcagcggtt ccgccgggca gtggcctcct tcgcagaggc
     1081 caatgacatc ccgtggatca agttcggcaa ggatgacgtg ggcggcaagc tggagttgat
     1141 gcgcccgcat ttggaccgtc aagccgcgac gggccggtct ggggtggccg cgatcggagt
     1201 ggcccaggag tttcaacggg tctggagtgc ctatgagcgt cagacgccga cgggggcggc
     1261 gcagtggtgg ttcaccaagg ccgaccggcg agtgagctgc tactacttct acctctggga
     1321 tgtcgatttc gggccggcgt ttatcaaggt gtgcacctat ttcccgtatc cagccaagat
     1381 ctggctcaac gggcacgagt gggccaaacg ccaggctact caggccggga tcggcttcac
     1441 ggagttatcc aacgggtttg ccacctgtga ggacccggcc gcgttgcagg agatctgtga
     1501 ccggctcggg ccgggcacga tcgaggtgtt cgtgcagcgg tggctggcgc ggctgccgct
     1561 gccgttcacc gacaccgacc gggacgccgg ctactggtgg gagacctcca tgcgccagat
     1621 cgagacctcc cgcaccctgg tcttcaccgc accgcgccat gcccggggct ttttcgaggc
     1681 tctcatcacc gacaatctcg acctcggtcg cccgcacaac gtcgaaatca tcttcaatcg
     1741 ccgggtacgg cgagacacac ccggtacctt ccgtactgcc attgaccgcc gggacaacgg
     1801 cggggtgatc gtcaatgtgt tctacaagca ctcccggatc aagcagtacc tcaaagacgg
     1861 ccgggccatg cgtatcgaga ccgtcatcaa cagtccccgg gacctgggct gccaggcccg
     1921 gttgcccaac ctggacgacc tgcagaccaa ggcgcgtgcg tgcaatcgcc ggatcctgga
     1981 tgctgaacgg gtcggtcagg gctgtgttct cgcgagtcca gccttcgcgc ggatcgcgca
     2041 ccccaccgtc gatgcggagg ggcgaaggac cccagccctg cggttcggcg atcctcgggt
     2101 catggccctg accggcgccc tgtgccagac actgctcgct gcgaccggct tcaccaacaa
     2161 gaaccttcgt gtcttgatcg ccgggctgct cggcagtgac taccgcccgg gccagatgac
     2221 ctacgatctg cgccggctgc gcctggctgg gctcatccgc cgcatcgagc acaccaaccg
     2281 ctaccagctc accggcgagg ggatccgcat cgccgtgttc tacaccaagg tctacaaccg
     2341 gctcctcgtc ccgctcaccg ccgctgacca gccccaagcc ccacccgacc ttcgccaagc
     2401 cctgcgcacc ctcgatcacc acgtcgacag ctacgcccac cacgcccggc tcagacccgc
     2461 cgcctgaaac ttgacacaaa cgtgaagaag ctagagaccg aagatcgcta ggcgtcggta
     2521 tctacgcgct gcaccgcgac ccagcgctgt gggtcaaccc acaccagttc gatcctgacc
     2581 gcttcagccc cccacggtcg caggggcgaa atcggtggca gtacctgccc tttggtggtg
     2641 gaccacggtc ctgcatcggt gaccatttcg cgctgctgga ggccacactc gggctggcca
     2701 ccgtgatccg cgcggtcaag atcacgtcga tcgagaacga atttccgctc gcgttaccgt
     2761 tcaccatgac cgcccatgga ccaatcccgg ccaaggtgcg ggaccggacg tagtccgcg
//
LOCUS       DASVXZ010000971         3796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1424069, whole genome shotgun sequence.
ACCESSION   DASVXZ010000971 DASVXZ010000000
VERSION     DASVXZ010000971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1424069"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /locus_tag="VF788_20300"
     CDS             <1..664
                     /locus_tag="VF788_20300"
                     /inference="COORDINATES: protein motif:HMM:NF015038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEX8936472.1"
                     /translation="HLPPQTRHDGYRRRRSPEAVSRVAVHDAWAPYDTYADVDHQLCC
                     AHAQHELQAVTDTAPDADWCWATQAADALVAMQRPAVQATTAGTVDADALDKQLQLYR
                     SAAQIGITQTAARSSKMMCKHHALARRLLDRQDDYLRFTTDRQIPADNNGSERDIRMI
                     KLRQKVSGCLRTLTGAKQFCAIRSHLSTAKNTVETSSTPSSCSPRANPGCPQLTNHHS
                     AT"
     gene            complement(997..1674)
                     /locus_tag="VF788_20305"
     CDS             complement(997..1674)
                     /locus_tag="VF788_20305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936473.1"
                     /translation="MATIGVETLTTCGPVVVTSSGDFNVLDATSGKLEVMLVHAVNGG
                     YLKPDSLDHNNHASEARATKNLDNDTINKRGHLWYLTPAIFIDWLQKMTYFIESAASE
                     ENDGPDTSKRRRISYHVSNPTGNGIHVGRLDQLPGDYQYKENGTLTPLSQCWTLTLTS
                     CGGLLFAPAIDLNLIWGTLNNSPDMGVCPRPIDNWGGGFQGPNIKNGVWYPKRYQRGG
                     VGERDHH"
     gene            complement(2447..2917)
                     /locus_tag="VF788_20310"
     CDS             complement(2447..2917)
                     /locus_tag="VF788_20310"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX8936474.1"
                     /translation="MAVIAARLPVHAWPDRALSLVAVDAHTGQSRIFTRDCGVGLVDA
                     VAASCAVPGIWPPVTIGATRYIDGGVQPTSNVDLAVGYPMVLLLAPLVDSWLDSQLTE
                     LTQNNSRVEVILPDENSLTTFGLTPLDSDTRTPAGRAGRAQGHQTAITITALWN"
     gene            2965..3429
                     /locus_tag="VF788_20315"
     CDS             2965..3429
                     /locus_tag="VF788_20315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936475.1"
                     /translation="MAAQLSGILDFGLEREHRVDQFGHRRPAGHQFVGLQGGIGLSFE
                     QVAQRQPAAHLGSHGRGRRGTDHEIGRGHIDALVSKSGQHTDLPGKLAIPPASQHQSA
                     LPRHSDSLLPWTTAPRTIIRPDPSRPPPNVQAAGLRQDYDHHRPQTSKHRHP"
     gene            complement(3559..>3796)
                     /locus_tag="VF788_20320"
     CDS             complement(3559..>3796)
                     /locus_tag="VF788_20320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936476.1"
                     /translation="AEAGLVELGMSVSVKCVGDRSPAEAFWRCSMAQFRGELVGRGLL
                     CEAEYTAGMAPLDDPAVIDAPFANLAVWGRATGR"
BASE COUNT          757 a         1224 c         1141 g          674 t
ORIGIN      
        1 tcacctgcca ccccaaacgc ggcacgacgg atatcgacga cgccggagtc ctgaagcggt
       61 ttcgcgggtc gcggtgcacg acgcctgggc gccctatgac acctacgccg acgtcgacca
      121 tcaactgtgc tgcgcgcacg cgcagcacga gttgcaggcc gtcaccgaca ccgcgccaga
      181 cgccgactgg tgctgggcca cccaagccgc cgatgcgctc gtggccatgc aacggccggc
      241 ggtccaggcg accaccgccg gcaccgtcga tgccgacgcc ctggacaagc agctccagct
      301 ctaccgctcg gccgcgcaga ttggcatcac ccagactgcg gcgcgctcca gcaagatgat
      361 gtgcaagcac cacgcgctag cccgcaggct gctcgaccgg caagatgact acctccgctt
      421 caccaccgac cggcaaatac ccgccgacaa caacggctcg gaacgagaca tccgcatgat
      481 caagctgaga cagaaggtgt ccggttgcct gcgcaccctc accggagcca aacagttctg
      541 cgcaatccgc agccacctat ccaccgccaa aaacacggtc gaaacttctt cgacaccctc
      601 gtcatgctcg ccgagggcca accctggctg tccgcaactc actaatcacc actcggcaac
      661 ctgaccagtt acacggaagt aaaacggaag gggccgccgc cccctcttac cgtatcgcgt
      721 gatgcagtac gggttccctc gctcccgaag cggtgtccga cggtccgaca gtgtccatga
      781 cgcgctggtt tctgtgcgcg agaattgtaa acgatcgggt gtgtccaccg ccgacccacc
      841 cgatcaaccc agatacacga tcccatcggg tcgctgacgg gatggggaac ccgactggcc
      901 agcgacgagc gcggactggc cggtgcgata ctaccgcccc cacctgctca ccgtcgccaa
      961 acgggccccc acaacgatca gcaacatccc actagatcag tggtggtctc gctcgcctac
     1021 tcctccgcgc tgataccgct taggatacca gacaccattt ttaatattcg gcccttgaaa
     1081 accgccgccc caattgtcga tgggccgggg acacacgccc atatcgggcg agttgtttag
     1141 ggttccccat atgaggttca gatctatcgc tggcgcgaaa agtaggcccc cacacgatgt
     1201 tagcgtcagg gtccagcact ggctgagcgg ggttagtgtg ccgttttctt tatattgata
     1261 atcaccggga agttgatcca agcggccaac atgaatccca ttcccagttg gattacttac
     1321 atggtagcta atgcgtctac gcttgctagt gtcggggccg tcattttcct cgctagcagc
     1381 agattcgata aaataagtca tcttctgcaa ccagtcgatg aaaatcgcgg gtgtaagata
     1441 ccataggtga cctcttttat ttatcgtatc attgtcaagg ttcttggtgg ccctcgcttc
     1501 gcttgcgtga ttattgtggt ctaggctgtc cggtttgaga tatccgccat tgaccgcgtg
     1561 aacaagcatt acttcgagtt ttccactggt agcatcaaga acgttgaagt cgccgctcga
     1621 agtcaccacc accggaccgc atgttgtcaa cgtttcgaca ccgattgttg ccatctttcc
     1681 tcgccttatt tccgcttact atgtcaggtt tctaaatgat agcaaccgcg gccaggcgga
     1741 gggtccgtac aaactacgga tttctccgct gattagcagc ccttaaggtg cccgtagaaa
     1801 ctacgtaccc cgaacgaatg atagatatcc ttgcggcgca acatgattac agtgcaagaa
     1861 gcagtctatg gaacgacagc aggagggctg gttcaagcgg tccgtgcatc ttcacgacat
     1921 cgattcgcag tgtgttgtgg aaagagggag agggaggcgt gagccacttg cggcaggccc
     1981 ctggcctgcc ggcaacgccg gccgaggagt cgtaggggcc ccgggttcaa gccgttcact
     2041 ccggatcgca ccggcccctc cggacgtatg ccgcttgcca ccgtgatgat cagtgctcga
     2101 cgatcgaccc gcggagggac cggtgcgatc cagacgcgca gcgggcttga cgctgggcgg
     2161 acggctccgg acaattcgcg cctccctgtc tcggacgcaa ccacgacaac ctccacatct
     2221 ggctaccgtg tcacgcgcga gccgcccggc gcgctcgcgg agcggagcgg gagcgagcgc
     2281 tagccggatg tagcggggcg tgtccgggcc gtgtcggccc ggcttgaccc gaggaaggaa
     2341 atactcatcg catgcggatg agcactgtct gtgcagggcc agggcggaca gaacatggac
     2401 cagacgtgag tgttctggga tcacaatcgg agccctggat gcgtgactag ttccagagtg
     2461 cggtgatggt aatggcggtt tggtgtcctt gggcgcggcc ggcgcggccg gccggggtgc
     2521 gggtgtcgga atcgagcgga gtgagaccga aggtggtgag tgagttctcg tccgggagga
     2581 tcacctcgac ccggctgttg ttctgggtga gttcggtgag ctggctgtcc agccaggagt
     2641 cgacgagcgg ggcgagtagc agcaccatcg ggtagccgac agcaagatca acgttagacg
     2701 tgggctggac accgccgtcg atgtagcggg tggctccgat ggtgaccggt ggccagattc
     2761 cgggcaccgc gcaactagcg gccaccgcgt cgaccagtcc gacgccgcag tcccgggtga
     2821 agatacggga ttgccccgtg tgggcatcca ccgcgaccag agacagcgcg cggtcgggcc
     2881 aggcatgcac cggcagccgt gctgcgatga cggccaaccg ggcgtttcgg ggccggtgtc
     2941 ggcgctcaac gccagcgcct caacttggcg gcgcaactca gcgggatcct ggatttcggc
     3001 cttgagcgcg agcatcgtgt cgatcagttc ggccaccgac gtcccgctgg gcaccagttc
     3061 gtgggtctgc agggcgggat cggcttgtcg ttcgaacagg tggctcagcg acagcccgct
     3121 gcccacctgg gcagccacgg tcgcggccgc cgaggtaccg accatgaaat cggccgtggt
     3181 cacatcgacg ccctggtcag caagtccggt cagcacaccg atctcccagg caagctggcc
     3241 ataccacccg cctcccaaca ccaaagcgcg ctccctcgcc acagtgactc cctcctgccg
     3301 tggaccaccg cgcctcgaac gatcatccgg ccggaccctt cccgtccgcc accgaacgtg
     3361 caggctgctg gtctgcggca ggactacgat caccaccgac cacaaaccag caagcatcgg
     3421 cacccctgac ttgaagccaa acggcaccca tgatctggaa ccagataggt ggatcaggca
     3481 gctgagaacc gccgtgagga ccaccgcacc ggtgaaatcg gcgattgggt ggggctgcgg
     3541 agggacggca taattttgct atcgcccggt ggcacggccc cagacggcga ggttcgcaaa
     3601 tggcgcgtcg atgactgctg ggtcatccag cggggccatg ccggcggtgt actcggcctc
     3661 acagagcagt ccgcggccca ccaactcgcc gcgaaattga gccattgagc accgccagaa
     3721 cgcctcggcc gggctccggt cgccaacaca tttgaccgac acggacatgc cgagctcgac
     3781 caatccggcc tcggcc
//
LOCUS       DASVXZ010000972         4550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1424412, whole genome shotgun sequence.
ACCESSION   DASVXZ010000972 DASVXZ010000000
VERSION     DASVXZ010000972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4550
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1424412"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /locus_tag="VF788_20325"
     CDS             complement(<1..874)
                     /locus_tag="VF788_20325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003054689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX8936477.1"
                     /translation="MAKPVLLTVDDDPGVSRAVARDLRRRYGEHYRVVRADSALDALD
                     ALKEIKRRGEPVAAILADYRMPQLNGVEFLEQAMDLFPRARRALLTAYADTDAAIQAI
                     NVVDVDHYLLKPWDPPEEKLYPVVDALVETWRAMGETAVEQTKVIGHRWSAPSYQARD
                     FLARNAVPYRWYSVDDPEGRRLLDAAGATDQDIPVVITADGQSLQQPSDSEIAAAVGL
                     STQPAEAFYDLIVVGAGPAGLGAAVYGASEGLRTVLVERQASGGQAGQSSRIENYLGF
                     PDGVSGAQLTDRARR"
     gene            complement(960..2003)
                     /locus_tag="VF788_20330"
     CDS             complement(960..2003)
                     /locus_tag="VF788_20330"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipase family protein"
                     /protein_id="HEX8936478.1"
                     /translation="MALLLVDASIESYYAYDPHAPARCNPRLVTPPAGYDLVDCWTGL
                     DTVFGSFPQVECFGVVFRSRAAPYSYVFSFRGTYSMLDVLEDIEFWEQQAFVPLRAPR
                     PVADVQVADGFWSIYSGSPTGSKSMQQQLFDLLDKYQASTQLIYQLFITCHSLGAALC
                     ELFTVDLALSPYRDIAYRNYNYACPLVGGPEFTQFYDSQPRGLDPATRTLRIQNTYDI
                     VPCSPPQLFGYQHVGDAYLLAFYNKNAGWWNPEAKFYDHQAVNYQAVLSCAFSSPNGV
                     CKNDHLVVGEETLVSDVPDPKKLCTFWLETQALLAVIAASSPVMGDATTVTVTEVAPS
                     TTSLDEPSPLGDQ"
     gene            complement(2174..2824)
                     /locus_tag="VF788_20335"
     CDS             complement(2174..2824)
                     /locus_tag="VF788_20335"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8936479.1"
                     /translation="MVSLERRNASRARRTRAAHLGPERRRPLILDAALEVYVERGYRG
                     TSMQAVADAAGVTKPVVYECYPNKDELLLALLDREERRLLDAITESLPTNLISDNVEA
                     VLAAGLTAFLAGAGQAPNSWRVVFDSGWGSGSVVAARIRRVRETVVGQLRELVHQYMV
                     AGEVDDIDRKALVVAELIASVSEACARMLVLECHPWTAAELATYVARLLARGLRPN"
     gene            2907..3743
                     /locus_tag="VF788_20340"
     CDS             2907..3743
                     /locus_tag="VF788_20340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009942145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEX8936480.1"
                     /translation="MAGGGLTGPADLTGFRELQQLAYAAAQSVAGSLEPGVTEKQAAR
                     RIREYLLEAGVQDWFHTPFAWFGDRTAFRGFRIPLQFFPTNRRLEEGMPFILDCAPVR
                     EGYMADIGYAGCLGINRIHQQLMDDLAGYRELIVTRVNDGAPLRQIYRDVDALITRHG
                     YDNRHRVYPGRVIGHQVGKVHSRLPKFITAGFGIRSLQTLVGDLIVERMHHRSPLWAD
                     GEISNHPATPGLWAVEPHIGFRDVGVKFEEILVVPDSGNAYWLDDDLPHVRGWQRRVV
                     DS"
     gene            3740..>4550
                     /locus_tag="VF788_20345"
     CDS             3740..>4550
                     /locus_tag="VF788_20345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX8936481.1"
                     /translation="MTRDITTTDGVALRVHESGQQGAPTVVCLHGYPDDHALWDGVAA
                     ELASRYHVVSYDVRGAGESGKPRGRQAYRIDQLVRDLATVIGAVSPERPVHLLAHDWG
                     SVQAWHAVTGRRLHGRIASFTSISGPCLTHADHWFRARLRRPTPRALRELITQLASSW
                     YVGFFQLPLLPELVWRAGLAGRVLALVEGSGAPVVADGVNGLALYRANMVPRLAAPQP
                     QTTDIPVQVLVAQRDPYVSGSLQADIGRWVPDLAVREIAGGHWLPRTHPHAV"
BASE COUNT          837 a         1475 c         1462 g          776 t
ORIGIN      
        1 gccgccgcgc ccgatcggtc agctgagcgc cggacacccc gtcagggaaa cccagatagt
       61 tctcgatccg ggaactctgc ccggcctgcc caccgctggc ttgacgctcg accagcaccg
      121 tgcgcagccc ttcggacgcg ccatacaccg cggcgcccag accggcgggc cctgcaccga
      181 ccacgatcag gtcatagaag gcctccgccg gctgggtgga gagccccacc gcagcggcga
      241 tctcggaatc gctgggctgc tgcagcgatt gcccgtcggc ggtgatcacg acggggatgt
      301 cctggtcagt cgcgccagcc gcgtcgagta accgccggcc ctccgggtcg tcgacgctgt
      361 accagcggta cggaacagca ttgcgggcca ggaagtcccg cgcctggtag gagggtgctg
      421 accagcggtg cccgatcacc ttggtctgct cgacggcggt ctcccccatc gcccgccacg
      481 tctcgaccag tgcgtcgacc accgggtaga gcttctcctc cggtgggtcc cacggcttga
      541 gcaggtagtg gtcgacgtcg acaacgttga tcgcctggat ggccgcgtcg gtgtcggcgt
      601 aagcggtcag caacgcgcgg cgggcccgcg ggaacaaatc catggcctgc tcgaggaact
      661 ccaccccatt gagctgtggc atccggtagt cagcgaggat cgccgcaacc ggttccccgc
      721 gccgtttgat ctccttgagc gcgtccagcg cgtccagcgc cgagtcggcc cgcacgacgc
      781 ggtagtgctc gccataacgg cgccgcagat cccgcgccac cgcacgtgac acgccggggt
      841 catcgtcaac ggtcagcagc acgggtttcg ccatcatccc ccactaacac caacgtagga
      901 acgcaatatt tctcttcggt tgcgcggacg cgggggagcc agtgggtcgg caaggatcat
      961 tactgatctc cgagtgggct cggctcgtcg agtgaggtgg tggaaggcgc aacctcagtg
     1021 accgtcacgg tcgtcgcatc gcccatcacc ggggacgagg cagcaatcac ggcgagtaga
     1081 gcctgcgtct ccagccagaa cgtgcacagc ttctttggat caggtacgtc ggacacgagt
     1141 gtctcttctc caaccacgag gtggtcgttc ttgcagaccc cgttcggact ggaaaaagcg
     1201 caactcagca ctgcttgata attcaccgcc tggtgatcat agaacttggc ttctgggttc
     1261 caccagccag cgttcttatt gtaaaaagcg agcaggtacg cgtcacccac gtgctggtag
     1321 ccgaacagct ggggtggcga gcagggcacg atgtcgtagg tgttctgaat gcgcagcgta
     1381 cgcgtcgccg ggtccagccc ccgaggctgg gagtcgtaaa actgagtgaa ctccgggcct
     1441 cccaccagcg ggcaggcata attgtagttg cgatacgcga tgtcccggta aggcgatagt
     1501 gccaaatcga ccgtgaatag ctcgcacaat gcggcaccga ggctgtggca agtgatgaaa
     1561 agctgataga tcagctgagt cgaggcctga tatttatcaa gaagatcgaa aagttgctgt
     1621 tgcatcgatt tcgagccggt cgggcttcca ctgtagatac tccagaagcc gtcggcaacc
     1681 tgcacatccg caacggggcg tggtgcccgc aagggcacaa atgcttgttg ctcccagaat
     1741 tctatgtctt caaggacgtc gagcatcgag taggtgccac ggaaagagaa cacataggag
     1801 tagggcgccg cccgcgagcg gaagaccact ccgaaacact ccacctgagg gaagctgccg
     1861 aagaccgtat cgagcccggt ccagcagtcc acgagatcat agccggcggg tggggtgacc
     1921 agccgtggat tgcaacgggc gggggcatgt gggtcgtacg cgtaatatga ctcaatgctc
     1981 gcgtcgacaa gcagcagggc caacgacggg tctacactcg tagtcacaga cattgcgtgc
     2041 tccgttgtcg atagatgagt gtccctgcgc atcgacgggt tccgcgtggc accgcggaac
     2101 caggatgcac cctacgccag ccagcctcag ctggccgccc agatgattta ccctcgatga
     2161 gtaggcagat ccctcagttg gggcggagcc ctcgggcgag gagcctggct acataggtcg
     2221 ccaattctgc tgcggtccac gggtgacact ccagtacgag catgcgagcg caagcttcgg
     2281 acactgaagc gatcagctcg gcaacaacga gcgccttgcg gtcgatgtcg tcaacctcac
     2341 ccgccaccat gtactggtgg acgagctcac gtagctgacc cacaaccgtc tcgcggaccc
     2401 ggcggatcct tgcggcgacc acagaaccgg agccccaacc ggagtcgaag accacccgcc
     2461 aggagttcgg cgcttggccc gccccggcga gaaaagcggt gagaccagcg gccagcaccg
     2521 cctccacgtt gtcggagatc aggttggtgg gcaacgattc agtgatcgcg tccagcaggc
     2581 gacgttcctc ccggtccagc agcgcgagca gcaactcgtc cttgttcggg tagcactcgt
     2641 agaccaccgg cttggtcacg cccgccgcat cggccaccgc ctgcattgat gtgccccggt
     2701 agccgcgctc aacgtagacc tccaacgccg catcgaggat cagcggacgc cggcgttcgg
     2761 gaccgagatg ggcggctcgc gtgcgtcggg cccggctggc attcctcctc tccagcgaga
     2821 ccaccttccg cttctccact tgacaaaatt accaccacgt aggaagttcc taccggaggg
     2881 taggaaaact ctctggaggt ggtttggtgg ctggcggagg gctgaccggt cccgctgatc
     2941 tgacagggtt tcgggaattg cagcagctgg cctatgcggc ggcgcagtcc gtcgccggga
     3001 gcctggagcc aggcgtcacc gaaaagcagg ccgcgcggcg aatccgcgaa tatctgctcg
     3061 aggcgggagt acaggactgg ttccacacac cgttcgcctg gttcggcgac cgcacagcgt
     3121 ttcggggttt ccggattccc ctccaattct tcccgaccaa ccggagactg gaagagggca
     3181 tgccgttcat cctcgactgc gcaccggttc gcgagggata catggccgac atcggctacg
     3241 ccggttgcct gggtatcaac cggatacacc agcagctgat ggacgacctc gccggatacc
     3301 gggagctgat cgtcacgagg gtcaacgacg gcgcgccgtt gcggcagatc taccgcgacg
     3361 tcgatgcgct gatcacccgg cacggttacg acaaccggca ccgggtctac cccggacgag
     3421 tcatcggcca ccaggtcggc aaagtgcact cacggctgcc gaaattcatc accgccggtt
     3481 tcggcattcg ctcgctccag accctcgtgg gtgatctgat cgtggagcgg atgcaccacc
     3541 gctcgccgct gtgggcagac ggcgagatct ccaatcatcc ggcaactccc ggtttgtggg
     3601 cggtcgagcc acatatcggt ttccgcgacg tcggggtgaa attcgaagag attctggtgg
     3661 tgccggacag cggtaacgcg tactggctcg acgatgacct cccgcacgtg cgtggctggc
     3721 agcgaagggt ggtcgactca tgacgaggga catcaccacg accgatgggg tggcactgcg
     3781 agtgcacgag tcgggccagc agggcgcacc cacagtggtc tgtctacacg gctaccccga
     3841 cgaccacgcc ctgtgggacg gcgtcgcggc cgagctggcg tcgcgctatc acgtcgtgag
     3901 ctacgacgtc cggggagccg gcgaatccgg gaaaccccgc ggccgccagg cataccggat
     3961 tgaccagctc gtccgcgacc ttgccacggt gatcggtgcg gtcagccccg agcgtccggt
     4021 gcatctgctg gcccacgact ggggatcggt ccaggcctgg cacgcggtga ccggccggcg
     4081 gctgcatggc cggatcgcct cgttcacctc gatctcgggg ccgtgcctca cccacgccga
     4141 ccactggttc cgggcgcgac tgcgccggcc gacgccacga gcgctccggg agctgatcac
     4201 ccaattggcc tcgagctggt atgtcggctt cttccagctg ccactgctgc cggaattggt
     4261 ctggcgtgcc ggcctcgccg ggcgggtgct ggcgctggtg gagggctccg gcgcacccgt
     4321 cgtcgcggac ggggtgaacg gcttagcgct ctaccgggcg aacatggttc ctcggctggc
     4381 ggcaccacag ccccagacca ccgatatccc cgtgcaggtc cttgtggccc aacgagatcc
     4441 gtacgtgtcg ggatcactgc aggccgacat cggacgttgg gtacccgatc tcgcggttcg
     4501 tgagatagcc ggcggccact ggctgccgcg gacccacccg cacgctgtgg
//
LOCUS       DASVXZ010000973         1726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1516857, whole genome shotgun sequence.
ACCESSION   DASVXZ010000973 DASVXZ010000000
VERSION     DASVXZ010000973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1516857"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..1097)
                     /locus_tag="VF788_20350"
     CDS             complement(135..1097)
                     /locus_tag="VF788_20350"
                     /inference="COORDINATES: protein motif:HMM:NF038175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IniB N-terminal domain-containing protein"
                     /protein_id="HEX8936482.1"
                     /translation="MSSTKSLLDFILSLLNDSDAREAFHANPDQALADAGLSDVCGED
                     VSDAMTYVAEYHPVSTVGNREYNVGNRGDDRDYGDDRSYQHDGGRHHEGWRPDPGLDS
                     HAAVVQQLEYISNNYTYSDSHDTVIDKSVNQSIWNEGTLNQRFTDNSVTATDHSVAAG
                     RNINGDVANGDGNIVGDNASVGNTSNDYSTHGSFNGNNIADRGGIAGDGNVTDSDHSD
                     VATNGSRLVDNREDSHDTTLNNVGNTTDSNNTELENVGNHNEPHTTTISDSGNYEPHT
                     NYHPEITEDSNNTSVDDSRISHNEQNGLLNVNETHVLDDLHLHL"
     gene            1358..>1726
                     /locus_tag="VF788_20355"
     CDS             1358..>1726
                     /locus_tag="VF788_20355"
                     /inference="COORDINATES: protein motif:HMM:NF012242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX8936483.1"
                     /translation="MGYWLGIDLGNTVTAAAVCRAAGTAEVVTLDSGSAVVPSVVFLG
                     DHGEVEVGQAALRQAVTDPDRVVRSFIARTGDQVPMVIGGHAYTAAQLAAMLTRWVVD
                     EVSGQQGGPAEGIVVTHPATW"
BASE COUNT          241 a          485 c          632 g          368 t
ORIGIN      
        1 tggggtcggc accgactagt gaagcattcg aagcagccgc gcgcgccgga tcgggtcgag
       61 gtgtcaaacg agtgcagctc cgccaccccg gggcgggagt ggcggagctg ctgtcctacc
      121 tggttaccgc tggttcagag gtggaggtgg agatcgtcga gcacgtgggt ctcattgaca
      181 ttgagcaagc cgttctgctc gttgtggctg atcctggaat cgtccacgct ggtgttgttc
      241 gagtcctcgg tgatctcggg gtggtagttg gtgtggggct cgtagttgcc cgagtcgctg
      301 atggtggtgg tgtgcggctc gttgtggttg ccgacgttct cgagctcggt gttgttcgag
      361 tcggtggtgt tgcccacgtt gttgagcgtg gtgtcgtgac tgtcctcgcg gttgtccacc
      421 agccggctgc cgttggtggc cacgtcgctg tggtcggagt cggtcacgtt gccgtctccg
      481 gcgatcccgc cgcggtcggc gatgttgttg ccgttgaacg agccgtgggt ggagtagtcg
      541 ttggacgtgt tgcccaccga ggcgttgtct ccgacgatat tgccatcgcc gttggcgacg
      601 tcaccgttga tgttccggcc ggcggccacg gagtggtcgg tagcggtcac cgagttgtcg
      661 gtgaatctct ggttgagcgt gccctcattc cagatggact ggttgaccga cttgtcgatc
      721 acagtgtcgt ggctgtcgga gtaggtgtag ttgttggaga tgtactccag ctgttgcacc
      781 acggcggcgt gtgagtccag gcccgggtcg ggtcgccagc cctcgtggtg ccgcccgccg
      841 tcgtgctggt agctccggtc gtctccgtag tctcggtcgt ctccgcgatt gccgacgttg
      901 tactcgcggt tcccgacagt ggacaccggg tgatactcgg ccacatacgt catcgcatcg
      961 gagacatcct cgccacacac atcgctcaga cctgcatcag ccagcgcctg atccgggttc
     1021 gcgtgaaacg cttccctggc atcgctgtcg ttcagcaagc tcaggatgaa atccagcagg
     1081 ctcttcgtgc tcgacatgac cgtctccctc gtgtgatgta ccgggcccgg cgaggtccgc
     1141 cggtggtgtg acggcaaagg tagggcccac gcagcagccg gacatcgggg actgcaccgg
     1201 gttgccctcg cccgggatta ggggattgac agcaggccag attgggggca cgggggccgc
     1261 cccgagcgtt aacgcaacgc cctgtctcag gcgatacgca agccagacat cgttcagatc
     1321 agttccaggt gcgcgtcagg tcgaggaggg tgctgggatg ggctactggc tggggattga
     1381 tctgggtaac acggtcacgg cggcggcggt gtgtcgggca gcggggactg ctgaggtggt
     1441 gacgttggac agcggctcgg cggtggtgcc gtcggtggta tttctgggcg accatggcga
     1501 ggttgaggtc ggccaggccg cgttgcgaca ggcggtgact gatccggatc gggtggtgcg
     1561 ctcgttcatc gcgcgcaccg gggaccaggt tccgatggtc atcggtggcc acgcctacac
     1621 cgcggcgcag ctcgccgcga tgctgacccg ctgggtggtg gacgaggtca gcggccagca
     1681 agggggccca gccgagggaa tcgtcgtgac gcacccggcc acctgg
//
LOCUS       DASVXZ010000974         3411 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1517080, whole genome shotgun sequence.
ACCESSION   DASVXZ010000974 DASVXZ010000000
VERSION     DASVXZ010000974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1517080"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VF788_20360"
     CDS             complement(<1..728)
                     /locus_tag="VF788_20360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008430 - selenium binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenium-binding protein SBP56-related protein"
                     /protein_id="HEX8936484.1"
                     /translation="MNAPPRTFPDPTFYRSPAEAAAAPAEKLAYVVAFDRAAARPDAL
                     TVIDVDPGSPRYGQVVGWADLPTLGDELHHFGWNACSSALAHEGHDLHGLERRYLLLP
                     GLRSSNVHVYDTQPDPTNPTLVKTITAKELADKAGYSRPHTLHCGPEGIFLSCLGGGN
                     GADGPGGIALLDHTSFEVLGPWENDRGPQYLAYDAWWHLKQNTLITSEWGTPSMIEDG
                     VNPELLLGNKYGHALHFWDLAEGR"
     gene            1179..2375
                     /locus_tag="VF788_20365"
     CDS             1179..2375
                     /locus_tag="VF788_20365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018684056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX8936485.1"
                     /translation="MARLAQTDGLTEIQQEILATVKTFVDKEIIPVAQELEHTDTYPQ
                     EIVEGMKEMGLFGLTIPEEYGGLGESLLTYALVVEQIARGWMSVSGVINTHFIVAHMI
                     SHHGTDEQKQHYLPGMAQGRIRGAFSMSEPELGSDVAAIKTRARRDGDHYIVDGAKMW
                     LTNGGTSTLVATLVKTEEGAAKAHHNLTALLVDKPTGYGEVAPGLSVPGKIDKMGYKG
                     VDTTELVFDGYRIGADKVLGAAPGRGFAQMMDGVEVGRVNVAARACGIAIRAFELAVD
                     YAQQRRSFGKPIVQHQAIAFKLAEMATKVEAAHLMMVNAARLKDSGERNDVQTGMAKL
                     LASEYCKEVTDDAFRIHGGYGYSKEYEIERLMREAPFLLIGEGTSEIQKTIISKGLLR
                     EYAARG"
     gene            2418..2933
                     /locus_tag="VF788_20370"
     CDS             2418..2933
                     /locus_tag="VF788_20370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HEX8936486.1"
                     /translation="MTSPFSGQGQMPGLPTPPTGWPIGSYTTYAEAQRAVDHLADNQF
                     PVAEVTIVGVDLMLVERVIRRLTWGRVLGQGAASGAWFGLFVGVLLSLFSSQAGAGII
                     PIMVGLATGAVFGTVFAAAGYASTRGRRDFASSSQLVAGRYDVLCQPRHAEQARDMLA
                     KLALGPGAAPA"
     gene            complement(2953..>3411)
                     /locus_tag="VF788_20375"
     CDS             complement(2953..>3411)
                     /locus_tag="VF788_20375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX8936487.1"
                     /translation="GEAPATHTRVLLSSLMADRPERRIRCVGAVLFDDEGRLLLIRRA
                     HEPGQGRWSVPGGRVEAGETDHRAVLREVAEETGLIVEVIRLLGNVQLPASDGAVFDV
                     YDYICRPAGGTLSAGDDAEETRWCDAETLATLSVVSGLVEALTQWRSLPC"
BASE COUNT          611 a         1078 c         1127 g          595 t
ORIGIN      
        1 tgcctgccct cggcgaggtc ccagaagtgc agcgcgtggc cgtacttgtt gcccagcaac
       61 agttccgggt tgaccccgtc ctcgatcatg gaaggagtgc cccactcgct ggtgatcagc
      121 gtgttctgct taaggtgcca ccaggcgtca tacgccaggt actgcggccc gcggtcgttc
      181 tcccacggtc ccaggacctc gaaactggtg tggtcgagca gcgcgatccc gcccgggccg
      241 tccgcaccat tgccgccccc caagcaggac aggaagatcc cctcgggacc gcagtgcagc
      301 gtatgcggcc gggagtaacc ggctttgtca gcaagctcct tcgcggtgat cgtcttgacc
      361 agggtggggt tggtcggatc cggctgggtg tcatagacgt gcacgttcga gctgcgcagt
      421 cccggtagca gcaaataacg acgctccagg ccgtgcaggt catgaccctc gtgggcaagt
      481 gcgctgctgc aggcgttcca gccgaagtgg tgcagctcat cgcccagagt gggcagatcc
      541 gcccagccca ccacctgccc ataccgtggt gagccggggt cgacgtcgat gaccgtcagc
      601 gcgtcgggcc gcgcagccgc gcggtcgaat gcgacgacat aggccagctt ctcggccggc
      661 gctgcggcgg cctctgcggg gctgcggtag aaggttgggt ctgggaaagt tcggggcggt
      721 gcattcatga gtcactcctc ggttctcggc agatgtcctg ggagatatgg cgctctcaac
      781 gcggtcccgg gggtatgggt ggcggagact tagccgagcg gatcctggcc cgctcaccgc
      841 gccgaactga tcagccagcg gtcacgaggg cgacacaacg cgctggccag ccgaagaaga
      901 tcgacatgtc ggcgcatgaa cagccatacc ttcatgaata cttcggacac ctgagatgtt
      961 gcgccgttgc agcacattgc catgaaccgg cctgcggtgc ccgctgaaag catcgtgatc
     1021 cgtccgtcgc gccgaatcga gctaacggag gatggtaccg aaccaccagg tgcgcccacc
     1081 gcagatcacc cggtcgattt caccgcgcgg aacgggcata agcggccata ctggtgagtg
     1141 ctcgcatgga actcgtagcg cgcgacgaaa ggtgcctcat ggcgcggctt gctcaaactg
     1201 acggtctcac cgagatccag caggagatcc tggccacggt caagaccttc gtggacaagg
     1261 agatcatccc ggtcgcccag gagctggagc acaccgacac ctacccgcag gaaatcgtcg
     1321 aggggatgaa ggagatgggc ctgttcgggc tcaccattcc cgaagaatac ggcggcctgg
     1381 gggagtcatt gctcacctat gcactggtcg tcgagcagat cgcccgtggc tggatgagcg
     1441 tctccggcgt gatcaatact cacttcatcg ttgcgcacat gatcagccac cacggtacgg
     1501 acgagcagaa acaacattac ctgcccggca tggcgcaagg tcgcattcga ggtgcttttt
     1561 cgatgtccga gcctgagctc ggttccgacg tcgcggcgat aaagacccgg gcccggcgag
     1621 acggtgacca ctacatcgtc gacggcgcga agatgtggct aaccaatggt ggcacatcaa
     1681 ctctggtggc aaccctggtg aagaccgagg agggtgcggc gaaagctcac cacaacctca
     1741 ccgcgctgct ggtggacaag cccactggct acggcgaggt ggcgcctggg ctcagcgtgc
     1801 cgggcaagat cgataaaatg ggttacaagg gtgtcgacac caccgagctg gtgttcgacg
     1861 gctaccggat cggagccgac aaggtcctcg gcgcagctcc cggcaggggt ttcgcccaga
     1921 tgatggacgg ggttgaggtg gggcgggtca acgtggccgc gcgggcttgc ggcatcgcca
     1981 tccgtgcttt cgagctcgct gtcgactacg ctcagcagcg ccggagcttc ggcaagccga
     2041 tcgtgcaaca tcaggcgatc gcgttcaaac tggccgagat ggctaccaag gtcgaagccg
     2101 cgcatctgat gatggtcaac gccgcccgcc tcaaggattc cggcgagcgc aacgatgtcc
     2161 agaccggcat ggcgaagctg ctggccagcg aatactgcaa ggaggtcacg gatgacgctt
     2221 tccgcatcca tggcgggtac ggctactcca aggagtacga gatcgagcgg ctgatgcggg
     2281 aagccccgtt cctgctcatc ggcgagggca ccagcgagat ccagaagaca atcatcagca
     2341 aggggctgct gcgggagtac gctgcgcgag gttgagccag cattggaacg gatacctcgt
     2401 aggtgaggtg atgcaccatg accagtccat tcagcggcca gggccagatg cccggtctac
     2461 ccaccccacc gaccggctgg cccatcggct cctacaccac atacgctgag gcgcagcgtg
     2521 cggtggacca cctcgctgat aaccagttcc cggtcgccga ggtcacgatt gtcggagtgg
     2581 acctcatgtt ggtggagcgg gtgatacgcc gactgacctg gggccgggtg ctcggccagg
     2641 gggcggcgtc aggtgcctgg ttcggcttgt tcgtcggggt gctactgagt ctgttctcct
     2701 ctcaggctgg cgccgggatc attccgatca tggtgggtct ggctaccggc gcggtgtttg
     2761 ggacggtatt cgccgcagcg ggctatgcct cgacccgcgg ccgccgggac ttcgcgtcat
     2821 cgagtcaact ggtagccgga cgctacgacg tgttgtgtca gccgcgccac gccgagcagg
     2881 cccgcgacat gctggccaaa ctcgctttgg gccccggcgc cgcccccgct tgaagcccct
     2941 ttgcagctgg ggctagcagg gtagggagcg ccactgggtg agggcttcga cgagtccgct
     3001 gacgacggaa agggttgcca gagtttccgc gtcgcaccag cgggtctcct cggcgtcgtc
     3061 tcctgcgctt agcgtcccgc cggctggccg gcagatgtag tcgtagacgt cgaacaccgc
     3121 cccgtccgac gcgggtagct gcacgtttcc cagcagccgg atgacctcga cgattaaccc
     3181 ggtttcctcc gctacctcgc ggagcactgc gcgatggtcc gtctcgccgg cctcgacccg
     3241 gccgccgggc accgaccagc ggccctgccc gggctcgtgt gctcgtcgaa tgagcagcaa
     3301 cctgccctcg tcgtcgaaca gcacggctcc gacgcaccgg attcgccgct cgggccggtc
     3361 tgccatcagc gatgacagta gtaccctcgt gtgtgtcgcg ggcgcttcac c
//
LOCUS       DASVXZ010000975         2611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1070768, whole genome shotgun sequence.
ACCESSION   DASVXZ010000975 DASVXZ010000000
VERSION     DASVXZ010000975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070768"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..>2611
                     /locus_tag="VF788_20380"
     CDS             179..>2611
                     /locus_tag="VF788_20380"
                     /inference="COORDINATES: protein motif:HMM:NF037016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEX8936488.1"
                     /translation="MALLAAPAIVMALITDLGGNTSPTIQSDQADIADPSANPHGNAS
                     PAIQGKGADTADPSANTLPAQAIQSEEAVYARGKTVTITGSNWQPGESVHINVNDDQG
                     KTWSRIVDVTADASGRIQVQFQLPDWFGAAYKVTAMGDQSGVATTSFTDGNVTFHGST
                     PAPASWTVNYTTHGGGNTTDNTSCATGGTDGSKTISPGTTGTASVGISKEGSVRFGTV
                     SVPADSTLVFDHWTDQNGNTVANDACLSGDPSGTNGNITDLIAHFDSAKQAPEAQPQP
                     IMSTDEDTAKTITLSGTDEGGDSLTFFIVTGPSHGTLGPIGALTCAGTAPRTCSANVT
                     YTPDNDYNGFDIFSFKADDGTEGSYPAPVSMLVNPVNDTPVATDETRTMSEDGGPLSI
                     DFGALVSDGETSDADLTYDITNPEPAKGSLGGSGPTRNFTPAANFNGTVNIDYTPTDR
                     GDPDKCSAANPPCAAAKISAQKTVTVTVDAVNDAPSFTKGPEQTKDEDAGAQTVDDWA
                     TAISAGPNESGQQLTFEVTNDNNNLFTSGGQPSVAPDGTLTYTPAADKNGSATVTIKA
                     KDSGGTANGGQDESAEETFTVTINAVNDAPSFQKGANETVNEDAGAQAVNGWATDISA
                     GSADESGQRLTFEATSDTNLFTAGGQPEIDASGKLTYEAAPNANGSATVTVKPHDDGG
                     TLNGGADISAEQTFTINVTAINDAPVARADTLATDEDTKLVFPSSDLVGNDYEGADNE
                     SSQTLAVTEVYEGIAGTVILGSNGNITFGPEADFSGNAAFRYLVCDDGSPRKCSVQRA
                     AVYVPVSPVNDAP"
BASE COUNT          578 a          861 c          769 g          403 t
ORIGIN      
        1 cgtcgcggcc ctccccgccc gataatctgt acttgctaca gtgaagcaaa ttgtgggaac
       61 cttaccagta acaaatgtat atgaggctcc gccaacaggt gagtagtgta tgtatcaaag
      121 aacgaggggg aggctgttga agctgaggag caatattctg ctcctactcg ttgtgtgtgt
      181 ggcgctgctc gccgcaccgg cgatagtgat ggcactcata accgacctgg gcggtaacac
      241 atcgcccacg atccagagcg accaggcgga catagccgac ccgagcgcta acccgcacgg
      301 taacgcgtcg cccgcgatcc agggcaaggg ggcggacaca gccgacccta gcgctaacac
      361 attgcccgcg caggcgattc agagcgagga ggcggtctat gcgcggggca agaccgtaac
      421 catcactgga tctaactggc agccaggcga gtccgtccac atcaacgtaa acgacgatca
      481 gggcaagacc tggagccgca tcgtagacgt gacggccgat gcgagtggtc ggatacaggt
      541 ccagttccag ctccctgact ggttcggggc agcctacaag gtaaccgcca tgggcgacca
      601 gtccggcgtg gcgacgacgt ccttcaccga cggcaacgtc acgttccacg gctccacccc
      661 cgctcctgcg agctggaccg tgaactatac gacgcatggc ggggggaaca ctaccgacaa
      721 cacttcttgc gccacgggag gcactgacgg atccaagacc atctccccgg gtaccacggg
      781 cacagcctcc gtgggtatct ccaaagaagg gtctgtgagg tttggcaccg tgagcgtgcc
      841 cgctgactcg acgcttgtat tcgaccattg gactgaccag aacggcaaca ccgttgccaa
      901 cgatgcgtgt ctctccgggg acccgagcgg cacgaatggc aacatcaccg acctcatcgc
      961 acactttgat tcggcgaagc aggctccgga ggcgcaaccc cagccgatca tgagcaccga
     1021 cgaggacacc gccaagacga tcacccttag cggcaccgac gagggcggcg acagcctgac
     1081 cttctttatc gtcacaggtc caagccatgg gaccctcggg ccgatcggag cgctcacgtg
     1141 cgcgggtacg gcacccagga cctgctccgc gaacgtcacc tacacgccgg acaacgacta
     1201 caacggcttt gatatcttca gcttcaaagc cgacgacggc accgagggca gctaccctgc
     1261 tccggtgtcc atgttggtca atccggtcaa cgacactccg gtggccaccg acgaaaccag
     1321 gacgatgagc gaggacggcg gcccgctctc catagacttc ggtgccctgg tctccgacgg
     1381 cgagacttcc gatgccgacc tcacctatga catcactaat cctgagcccg ccaagggttc
     1441 gcttggtggt tcaggcccga cgcgcaactt cactccggct gccaacttca acggcaccgt
     1501 gaatatcgac tatacgccca ccgaccgcgg cgatccggac aaatgcagtg ccgccaaccc
     1561 tccttgcgct gcggccaaaa ttagcgccca gaagaccgtg accgttacgg tcgacgccgt
     1621 aaacgacgcc cccagcttta ccaagggtcc agaacagacc aaagatgagg atgccggagc
     1681 gcagacggtg gacgactggg ccaccgctat ctctgcgggt cccaacgagt ccggccagca
     1741 gttgaccttc gaggtcacca acgacaacaa caacctgttc acctccggag ggcagccttc
     1801 cgtcgccccc gacggcacgc ttacctacac gcctgctgcc gacaagaacg gctctgccac
     1861 tgtcacgatc aaggccaagg acagcggcgg cacggccaat ggcgggcagg acgagagcgc
     1921 cgaggagacc ttcaccgtca ctatcaacgc ggtcaacgat gcgcctagct tccagaaggg
     1981 cgccaacgag acggtgaatg aggatgcggg cgcgcaggcg gtcaacggtt gggctaccga
     2041 catctctgct ggcagcgccg acgagagtgg ccaacggttg accttcgagg ccaccagtga
     2101 caccaacctg ttcaccgccg gggggcagcc cgagatcgac gctagcggca agctcaccta
     2161 cgaggccgca cccaacgcca acggcagcgc gacggttacc gtgaagcccc acgatgacgg
     2221 tggcacgctg aacggcggag cggacatcag cgccgagcag accttcacca tcaacgtcac
     2281 tgctataaac gacgcgcctg ttgcccgcgc cgacaccctg gcgaccgatg aggacacgaa
     2341 actggtcttc ccgtctagcg acctcgtggg caacgattat gagggcgcgg acaacgagtc
     2401 tagccagacc ctggccgtca cggaggtcta tgagggcatc gccggcacgg taatcctcgg
     2461 ttctaacggc aacatcacct tcggaccgga ggccgacttc agtgggaacg ctgccttcag
     2521 atacctggtg tgcgacgatg gtagcccgcg caagtgctcc gtgcagaggg cggcggtcta
     2581 cgtgccggtc agccccgtaa acgacgcacc g
//
LOCUS       DASVXZ010000976         3124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1070850, whole genome shotgun sequence.
ACCESSION   DASVXZ010000976 DASVXZ010000000
VERSION     DASVXZ010000976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070850"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VF788_20385"
     CDS             complement(<1..258)
                     /locus_tag="VF788_20385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936489.1"
                     /translation="MSSLRDRHLVVGITPFEEPNAPLVVAIARSGAVGVLDLGRDTGR
                     ARAALADACRWWPGNFGVRIPTGCPLTPADLPAQVDVVVREL"
     gene            924..2702
                     /locus_tag="VF788_20390"
     CDS             924..2702
                     /locus_tag="VF788_20390"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEX8936490.1"
                     /translation="MTKTANVAVPMRDGVTLRADVYRPATSAAVPVILMRTQYGKEAA
                     QVQPLRYQRPDWFASHCYLVVVQDIRGLFASGGTFSEFTNDRDDGYDSVEWAAALPGS
                     SGKVGMYGSSYVGATQWLAAETAPPHLTTIVPANTAADYYEGWTYENGAFRLNFIEPW
                     AMETIALSAAKNRGDTKVAQQLTQDSLDIAGWLRYTPYRVFPPFHPGDGAVAPYFYDW
                     IAHHTDGPYWQQWAPQQHYPKITIPVLHIEGWYDAFLAGGLRNFTGMVSSAGSPFARN
                     NQRIVIGPWDHLGWGRPDSPAAPMLKQIGPVANSPINELMLAWWDHFLKGVDNGVSTG
                     PTVNYFEMGANVWKTAAAWPLPGTQWTKYYLSGGGHAASAMGDGQLVTTSSASGQQPD
                     NYDYDPRNPVPSVGGHSCCGALNGSQGPYDQQSVEQRPDVLVYTTPPLAMDTEVTGPI
                     SVTLYASSSAPDTDWTAKLVDVHPEGTAVNLNNGIQRASFRESSAAPTSIGPGKVYQY
                     AITVWPTSNLFRAGHRIRLEISSSDFPQFDPNPNTGSWLGESATTQVAHQTVLHDAEH
                     PSALVLPVIPAPISSKPATTFPLTNR"
     gene            complement(2689..>3124)
                     /locus_tag="VF788_20395"
     CDS             complement(2689..>3124)
                     /locus_tag="VF788_20395"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936491.1"
                     /translation="LSCGAAAVWSLVLFPLLDTRSAMAFTVGVIITLGLMGLSYGPIG
                     AFLPETFPTRYRYTGTGMSFNLAGILGGALPPLVAAPLAATFGSWAIGVLLCALSLLG
                     LFCTRALAETKGRDLHEPQPSVPTRQVRETRSSSRAEGINGW"
BASE COUNT          560 a         1053 c          977 g          534 t
ORIGIN      
        1 cagctcacgc acaaccacat ccacctgagc tggcaaatcg gcgggggtga gcggacatcc
       61 ggttggtatc cggacgccga agttaccggg ccaccatctg cacgcgtccg ccagcgcggc
      121 tcgcgccctg ccggtgtctc gacccaggtc cagcacaccc accgccccgg agcgcgcgat
      181 ggccaccacc aacggggcgt tgggctcctc gaagggcgtg atccccacaa ccagatgtcg
      241 gtcccgcaga ctgctcatcc ttggccctgt cctcctgtac gggggctagc ccggtagtcc
      301 gtactgtcgc cctgacctgg gccctgaccg gccctggaat gcgtgtcgtc gatacgccgg
      361 ccgggacccg ggtggtcccc ctcggtgatc acccgggtcg ccagatgatg cggcgatgac
      421 gaacagaccg acctcgtgag gcggccgcgg agtcgcgtct agggcgcagc tcggtcagct
      481 ctcgctggca ttgagatggc gaccacgact gatgaaaccg cgattgtgtc cagcacggca
      541 ggcccccctt gccttatcgc acccaactac tgcccctcat tcagggctac gcactcacaa
      601 ttcgtaacac taggtgataa caacgatgcc tacaaggccc aagccaaccc ggatggctta
      661 tcagtaccga ctgaaatggc ctactgatac ttactcaatg gatcggcgct acttaggtag
      721 tcgcgccgtt gctgaccccc gcacggcggt gaccccgtac gtttgtggcc gggccgtcga
      781 ccgtgtacat ctgaggttga cgtgggggga gcgccgtgcg ctggtggaag aggtccgcga
      841 cggcagcggc cgcggcggtg atcactgcgg gtgccggatg tgctgccgcg ccgccctcgc
      901 cctcgggtgc aggtccgtgc gcggtgacga agacagccaa cgtggcggtg ccgatgcgcg
      961 acggcgtcac gctacgcgcc gacgtgtacc gcccagccac ctccgctgca gtgccggtga
     1021 tcctgatgcg cacgcagtac ggcaaagaag cagcgcaggt ccagccgttg cgctaccagc
     1081 gtccggactg gttcgcctcg cactgctacc tcgtggtcgt ccaggacatt cggggtttgt
     1141 ttgcttccgg aggcacgttc tccgagttca ccaacgaccg cgacgatggt tacgacagcg
     1201 tcgagtgggc tgcggcgctg cccggctcct ccggcaaggt cggcatgtac ggctcgtcct
     1261 acgtaggggc gacccagtgg ctggcggccg agaccgctcc gccgcacctg accaccatcg
     1321 tgccggctaa taccgcggcg gattactacg agggctggac ttatgagaat ggcgcgttcc
     1381 ggctgaactt catcgagccg tgggcgatgg aaacgatcgc cttatcagcg gccaagaatc
     1441 gcggcgacac caaggtcgcc cagcagctca ctcaggattc cctggacatc gccggctggt
     1501 tgcgttacac gccgtaccgc gtttttccac catttcatcc cggtgacggt gccgtggcgc
     1561 cgtactttta tgactggatc gcgcaccaca ccgacggccc atactggcag caatgggcgc
     1621 cgcagcagca ctacccgaag atcactattc cggtgttgca catcgagggt tggtacgacg
     1681 ctttcctcgc cggtggcctg cgaaatttca ccggcatggt cagctccgct ggatcgcctt
     1741 tcgcgcgtaa caaccagcgg attgtgatcg gcccctggga ccacctcggt tggggccggc
     1801 ccgacagccc ggccgcaccg atgctcaagc agatcggacc ggtagcaaac agtccgatca
     1861 acgagctcat gctggcgtgg tgggatcact ttctcaaggg cgtcgacaat ggtgtgagta
     1921 ccggcccgac ggtcaattac tttgagatgg gtgccaacgt ctggaaaacc gcggccgcct
     1981 ggccactgcc tggcacccag tggacgaaat actacttgtc gggtggcggg catgctgcct
     2041 cggcgatggg tgacggtcag ctggtcacga cctcgtcggc gagtggccag cagcccgata
     2101 actacgacta cgatccgcgc aaccccgtgc ccagcgtggg cggtcactcc tgctgtgggg
     2161 cgctgaacgg ttctcagggc ccctacgacc agcagtccgt ggagcagcga ccggacgtgc
     2221 tggtgtacac gacccctccg ctggccatgg acaccgaagt gaccgggccg atcagcgtca
     2281 cgctctacgc cagctcgtcg gcgccggaca ctgactggac ggccaagctg gtcgacgtgc
     2341 acccggaagg caccgctgtc aacctgaaca acggcatcca gcgggccagt ttccgagagt
     2401 cgagcgccgc gccgacatcc atcgggccgg gcaaggttta ccagtacgcg atcacggtct
     2461 ggcccacaag taacctgttt cgcgccggtc atcggattcg gttggagatt tcctccagcg
     2521 acttccctca gttcgacccg aatcccaata ccggctcctg gcttggggag agcgcgacca
     2581 cgcaggtcgc ccaccagacc gtcctgcatg acgcagagca cccatcggcg ctcgtacttc
     2641 ccgtcatccc ggcgccaatc tccagcaagc ccgccaccac cttcccgctc accaaccgtt
     2701 gattccttcg gcgcgcgaac tgcttcgagt ctcgcgaact tggcgagtgg gcacgcttgg
     2761 ctggggctcg tgcagatcgc ggccctttgt ctcggcgagt gctctggtgc agaacaggcc
     2821 gagcagggaa agggcacaca ggagaacccc gatggcccag ctgccgaagg tcgccgccag
     2881 cggcgctgcc acgagcggag gcagcgcgcc ccccaggatg ccggccaggt tgaagctcat
     2941 accggtcccg gtgtaccggt atcgagtcgg gaatgtttcc ggcaggaacg ctccgattgg
     3001 gccgtagctc agacccatga gccccaaggt gatgatcacg cccacggtaa aggccatcgc
     3061 ggagcgtgtg tcgagcaagg ggaagagcac cagcgaccac accgccgcag ctccgcagga
     3121 cagc
//
LOCUS       DASVXZ010000977         2123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1426105, whole genome shotgun sequence.
ACCESSION   DASVXZ010000977 DASVXZ010000000
VERSION     DASVXZ010000977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426105"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VF788_20400"
     CDS             complement(<1..1011)
                     /locus_tag="VF788_20400"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8936492.1"
                     /translation="MWCARALPLVALTSVLALAGCSTNAPNSATGAKPKEPHTDFGVT
                     RTEIILGALTDKSSPFSEVGTAVVQGQQLWIRETNAEGGICGRKITLKIGDYQDNAVQ
                     ASNQYAALEPKVLGFMQIAGSSANAALSQRMIDNETTVVALSKSSDLLSNPYVIIPAT
                     TYDIEMINGLSYLMDQGKIHDGDTIGHIWLDGDYGANGLRGAQYFAQRHHLNLREAKV
                     TTDSAMRDVVAAFAAEPRAKAIALSTTPDQAASAAAANQEVRLGVPMVGNSPVFTPRL
                     LTGPASRALNQLSVVTSSVPFSSAVPKAQHVADAYRQAGYQELPNSGVPFGYAIGRIW
                     GQL"
     gene            1265..>2123
                     /locus_tag="VF788_20405"
     CDS             1265..>2123
                     /locus_tag="VF788_20405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936493.1"
                     /translation="MSDTTIEDLLPHAVVSSGCTEVPEQSVENAPEPAAAHRLKIAVA
                     WGDLAHAAADIHVAGHYRGVMPSAAERRLDEAISPAGPCGIICEHTRRRWLVGALGEV
                     AYFPGRVGAPDDTSQVLRAAVVGMGRVGTFTEDNACRLYQSLLREIMSLRHINTVATV
                     LIGSGAGNLSVHQVARAVVNGFGNALRNLPADVNPLVPDVFIVELDRLRAELCHRALL
                     LAAESEPLITMEPALVPLPGGQVGIDAAAVYGIRSLLDRLASMSDPATPDDPVHAILA
                     AVPDELRDQV"
BASE COUNT          329 a          658 c          733 g          403 t
ORIGIN      
        1 cagctgaccc cagatccggc cgatcgcata gccgaagggc acgccgctgt tgggcagttc
       61 ctggtagccg gcctgccggt aggcgtcggc cacgtgctga gccttgggca cggcggagga
      121 gaagggcacc gagctggtca ccaccgagag ctggttgagg gccctggaag ctgggccggt
      181 cagtaaccgg ggggtgaaca ccgggctgtt gccgaccatc ggcacgccca gccgcacctc
      241 ctggttggct gcagcggccg aggcggcctg gtccggcgtg gtgctcagcg cgatcgcctt
      301 tgctcgaggc tcggcggcga aagccgccac gacgtcgcgc atcgccgagt cggtggtgac
      361 cttggcctcg cgcaggttca gatggtggcg ctgggcgaag tactgtgccc cgcgtagccc
      421 gttggcgccg tagtcaccgt cgagccagat gtggccgatg gtgtcaccgt cgtgaatctt
      481 gccctgatcc atcaggtagg acaggccgtt gatcatctcg atgtcgtagg tagtagccgg
      541 gatgatcacg tacgggttgc tgagcagatc tgatgacttc gacagcgcga ccacggtggt
      601 ttcgttgtcg atcatgcgct ggctcagggc ggcgttggcc gaggacccgg cgatctgcat
      661 gaaacccagc accttgggct ccagcgcggc gtactggttg ctggcttgga cagcgttgtc
      721 ctggtagtcg ccgatcttca gggtgatctt tcgtccgcag atcccccctt cggcgttggt
      781 ctccctgatc cagagctgct ggccttggac gactgcggtg ccgacctcgg agaacgggct
      841 ggacttatca gtcagggcgc cgagaatgat ctcggttcgg gtgacaccga agtcagtgtg
      901 gggctctttt ggtttcgcgc ccgttgccga gttcggtgcg ttggtggagc aaccggccag
      961 ggctaggaca ctcgtcagtg caacgagcgg gagagcacgc gcacaccaca tctcatcgtc
     1021 ccttcaccga gcgccaccgc tacgagttct gccgtagaag acaacgcgac ggggattgaa
     1081 ggggtgacgg ctcggcgcgt tggcgccatc tggggacacc gcgccatcgt tcctgagggg
     1141 tcacgcaccc gatcgtgtgg tgaccgtcgg cgtgcgtatc actcagcggc gttcgcgcct
     1201 ctccgcgtag aacgcacgtc aatcgctcag gctccagatg gttcatcggg ttggagagac
     1261 acgaatgtcc gatacaacca ttgaggactt gcttccacat gcggtggtgt cctccgggtg
     1321 taccgaggtg ccggagcaga gcgtagagaa cgctcccgag ccggccgccg cgcaccggct
     1381 gaaaatcgca gtcgcgtggg gggacctggc gcatgcggcg gcggatatcc atgtggctgg
     1441 gcactaccgg ggggtgatgc cctcggccgc tgagcgcagg cttgacgagg cgatctcccc
     1501 agctggaccc tgcggcatta tttgcgagca cacccgccgc cgttggctgg tcggagcgct
     1561 cggcgaggtc gcctactttc ccggacgagt cggtgcgcct gacgacacga gccaggtgct
     1621 ccgggcggcg gttgtcggca tgggtcgcgt cggcactttc accgaggaca atgcatgcag
     1681 gctgtaccag tcgctgctgc gcgagatcat gtcattgcga catatcaata ccgtcgccac
     1741 ggtgctcatc ggctccggtg cgggcaacct gtcggttcac caggtggctc gggcggtggt
     1801 gaacgggttc ggcaatgcgc tgcgcaacct gccggctgac gtcaacccgc tcgtgcccga
     1861 cgtctttatc gtagagctgg atcggctgcg cgctgagctg tgccatcgtg cgcttctcct
     1921 cgccgccgag tcggagccgc tgatcacgat ggagccagcc cttgtgccgc ttccaggagg
     1981 gcaggtcggc attgatgccg ccgccgtgta cgggatccgg agcctgctcg accggctggc
     2041 cagcatgtcc gacccggcca cacctgatga tccggtccac gccatccttg cggccgtccc
     2101 cgatgagctg cgggatcagg tgc
//
LOCUS       DASVXZ010000978        10935 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1518233, whole genome shotgun sequence.
ACCESSION   DASVXZ010000978 DASVXZ010000000
VERSION     DASVXZ010000978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10935
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1518233"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1926
                     /locus_tag="VF788_20410"
     CDS             <1..1926
                     /locus_tag="VF788_20410"
                     /inference="COORDINATES: protein motif:HMM:NF028228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX8936494.1"
                     /translation="PPRLACGDLVANQYEVVGCLARGGVGLVYLARDTHLDGNYVALK
                     GLINTDNPRAVALEVAERRFLTAVDHPNIVRIFNFVTHQEPATRKLTGYIVMEYVGGQ
                     SLDEIRDIAAQRQDPLGGPLRVEYVIAYGIEILAAFEDLHGHGLLYCDMSPSNVIRSA
                     KRIKLIDLGAVRGIRDRWSPTVWKRRFQVSEEERKNGLTVQSDLYAAGKTLEYLLEVS
                     ADVPETDTELNTSPIAFGIKSFRRALARATHKEAHRRFPSAAAMSQQFRGVLREVLSL
                     RDEVPRPEPSTVFTDTAVLLDAGLGMVPPLERWTTYGAIDHDAPMDDGRPTAVAVAIG
                     LPAPRPAADDPAVGFLTTVTSTDQRQLIEQFSAFPKESVEIQLRTCHAYLELGDLGNA
                     QSCLDTAEKLSLKAAEYDWRIAWHHGLLALTMSQVTDAESRFDDVYRALPGEDAPKLA
                     LGFCYERTKPDDAQQYFKAVWRRDRSQASAAFGLARICLREGKRTDAVAILDEIPEVS
                     RHYYAARIAAVRVLSGRLTTGPGNDNGLPTVADFRSVVNRLPDLHLDGGDKEGTARDR
                     LTAAVREVALSWVCETGGNGQLDGGDVLGTPVGERRLRQLLERSFRALAARQAPDSPD
                     HGALIDLANAVRPRTAW"
     gene            2069..3073
                     /locus_tag="VF788_20415"
     CDS             2069..3073
                     /locus_tag="VF788_20415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936495.1"
                     /translation="MFRNVHGTVETVRTNTAPAILDVLAAEEALVRADSAAISSFQSG
                     EVKISGPGLQHQNQLTVASQNLAQVAEHNSAGPQGSQRIQLLEGLLESYSGSIGQAHA
                     HFGTAVGTADLWSASRLLHNGDNSILAELDHLREDQDKALIDQIKTSSMISGNLLVWA
                     VPIAFLFVLLGVTQVFLKRRFRRSVNPLLLLSTLVVVGLSMVTSLALVSQHRLESTRD
                     TLGRVTGEWKADISAADAQGQWTLGRLVMIECSQEKGGCGPTVNRSVTDRAPTDGTAD
                     RAHDTRVVRWNRDVDEQTGPAARNSHLWFFIPLMSALIAVLIPFGLWPRIEEYRYRPR
                     "
     gene            3091..4359
                     /locus_tag="VF788_20420"
     CDS             3091..4359
                     /locus_tag="VF788_20420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016335484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX8936496.1"
                     /translation="MAALFIAVMLVNAILTACSAPGSAGSVSVLGPWSGEEEKDFRQV
                     LDAFTRETGVQYTYQGTRALYEVLLSGVQKGTPPDIAILFSPGELGQYQHSGKLHILD
                     DVIAPLQGEYSKQWLTLQRLGTNNLYGVVIKANLKSIIWFNPHVAHPTIQTWDQLVAF
                     ADISAKTGGTPWCMGMVSTPTSGWPGTDWIEDILMRQFGTDIFQQWASGTLPWTSPQI
                     RKSWEDWGRIAVTEGSRSTLLTEVVDEGRPMFTNPPGCFLDHDPSFMTVNYQTYDGSP
                     KPGTDFDFFEFPAFGSNGGQFEVSADMASMFNDTPQARQLIRYLATEKAQKIWPRTGG
                     GAFSVNRKVKFDVYPDDVSKRIAHDLTTADTLCFDAADLMPATMRNAFYRAVLEYLSD
                     PTQLDQLLKELDGVRLGIPQGEWLKIPCGQ"
     gene            4403..4786
                     /locus_tag="VF788_20425"
     CDS             4403..4786
                     /locus_tag="VF788_20425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003070230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CU044_2847 family protein"
                     /protein_id="HEX8936497.1"
                     /translation="MPELAKFTLESGGSVHVDVEEGPGVKRVARDGKIPEARKTFEAG
                     LHEVRNAATIALAQFRAMARQPDEVEITFGVRMDVQIGAVIAKTGTAGNFEVKLTWRS
                     NDRSTHDETVSSPEAAELKRSDPVA"
     gene            complement(4760..5389)
                     /gene="hisH"
                     /locus_tag="VF788_20430"
     CDS             complement(4760..5389)
                     /gene="hisH"
                     /locus_tag="VF788_20430"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015804413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEX8936498.1"
                     /translation="MTKVVVLDYGSGNLRSAQRALARCGANVVVTADVDAALKADGLV
                     VPGVGAFAACMAGLRSARGDRIIGRRLAGGRPVLGICVGMQVLFSRGVEHGVQTDGCG
                     EWPGTVERLKADVLPHMGWNTVTAPVGSRLFAGLDADTRFYFVHSYAARRWELESSEP
                     LPAPLVTWAEHGEPFVAAVENGPLWATQFHPEKSGDSGAQLLRNWIGSF"
     gene            5504..6016
                     /locus_tag="VF788_20435"
     CDS             5504..6016
                     /locus_tag="VF788_20435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936499.1"
                     /translation="MRHLADLVARRYEGAESWADRVGVFRRAVELLDPVVREVFIEAN
                     AMFLERTGEISRYSADQDDGSVGEHWELSWPRQREAVSRDGGPVPPVQVIAWFRRSFN
                     HAHLRGSTAGDWPLQVINTEDATRQLPIVRAIVEAELHQRIYEGRYPVMPIAVRKYGL
                     PSGRSAAQDR"
     gene            complement(6025..7383)
                     /locus_tag="VF788_20440"
     CDS             complement(6025..7383)
                     /locus_tag="VF788_20440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011365774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8936500.1"
                     /translation="MTRQVVVIGADATGMSAASQALRRAGRDALRVVAFEAGRHVSYS
                     ACGIPYWVAGDVDSADDLIARSAAEHQANGIDLRIRTEITEIDLDSCTVTATELDGGA
                     SYQTRFDELVLATGAVPVRPDLPGADAPGIYGLQTLDDGAAVLAGLTRSPRQAVVVGG
                     GYIGIEMAEALVRRGLAVTVIDGAPEPMSTLDPDMGALVREAMQCMGIAVVTGSAVTA
                     FDVGPDGRVSAVVTPEATFPADLVVLGLGVRPRTELARAAGLPLGEHGGLLTDLRMRV
                     QGHDGVWAGGDCVEVLNRVSQRRVYVALGTHANKHGRVIGTNLGGGYATFPGVVGTAV
                     SKVCELEVSRTGLLEAEARAAGFQPVSVTVESTTRAGYFPGAVPITVKMIAERGTGRL
                     LGTQLVGREGSGKRVDVCAVALWNEMTVEEMIGLDLSYAPPFSPVWDPVLVAARKAAA
                     VV"
     gene            complement(7438..8520)
                     /locus_tag="VF788_20445"
     CDS             complement(7438..8520)
                     /locus_tag="VF788_20445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX8936501.1"
                     /translation="MPRRARARQAEHDIIRHCHRGVDALTVQHQVLRLLRVLMPIDAA
                     FFATADPETLLFTGARPEEPLDAVTSLFLDNEFGCDDVNKFTSLAASAEHVASLDGAT
                     GRDRRSSVRYRDIMRPLGLGDELRAALVVGSQCWGYLCLHRAEHRLGFTPSEAALLAR
                     LGPHIAHALRQAVLLGGAPVTPDDHGPGVVLLADDLSVVAITPEAEHLLSLIHNSGTV
                     ELPLPVAVHTVAARLRALERGTAPSTALPSTRVRTAAGHWLTVHASRLQGPPGDARIA
                     VIVEPTATRATVPLMLAAHGLTTREAEVARLVLRGTSTRAIADALHISGHTVQDHLKS
                     VFDKVGVRSRRDLVGRLLGPAGCDRG"
     gene            8608..9030
                     /locus_tag="VF788_20450"
     CDS             8608..9030
                     /locus_tag="VF788_20450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX8936502.1"
                     /translation="MTTDRLTRNKQLVNDFIQELFSTGDLDAVDRYLDPHFVNHDPPF
                     PGAPEGPEGMRKAAAMFHQALPDWHSDVDQLIAETDIVVERFTASGTHNGELMGAPPT
                     GKTVTLRGVNIFRIEGEKIVERWGRLDELGLLRQLDLI"
     gene            complement(9038..9187)
                     /locus_tag="VF788_20455"
     CDS             complement(9038..9187)
                     /locus_tag="VF788_20455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007026084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936503.1"
                     /translation="MSWVGLLLLALAGFLVGGMVSTWRSSRLLAVLLAIGAALATAGG
                     VTWML"
     gene            complement(9184..9783)
                     /gene="hisB"
                     /locus_tag="VF788_20460"
     CDS             complement(9184..9783)
                     /gene="hisB"
                     /locus_tag="VF788_20460"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEX8936504.1"
                     /translation="MSRTARIERVTKESSVLVELDLDGTGTTEVNTGIAFFDHMLISL
                     GKHAAFDLVVRATGDVDVDAHHTVEDVAIVFGQALRNALGDKAGIRRFGDAWVPMDET
                     LAHVAVDVSGRPYCVHIGEPEALAGFVVGGNYPTVLNRHVFETVAFHAQLAVHIRVLH
                     GRDPHHVTEAQYKALARALRAAVEPDPRAGGVPSTKGVL"
     gene            complement(9780..10916)
                     /locus_tag="VF788_20465"
     CDS             complement(9780..10916)
                     /locus_tag="VF788_20465"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX8936505.1"
                     /translation="MSPCREGNGALGSGVTLDQLPLREELRGCSPYGAPQLDVAVRLN
                     TNENPYPPPPGLVADVAAAVQQAAQDLHRYPDRDVVALRTDLADYLTGRTGVPLTAAN
                     LWAANGSNEIIQQVLQAFGGPGRSALGFTPSYSMHPIISSGTRTRWIPTPRRADFSLD
                     PAGAVAAIEEHRPDVLFVTSPNNPTGQSIPSADLAAVIVAARGIVVVDEAYGEFSTRP
                     SAVGLLEQFADRLVICRTMSKAFAFAGGRLGYLAAAPAVIDALLLVRLPYHLSALTQV
                     AARAALRHGSSTLESVALLVAERERVIAALQDLGARVVPSDANFVLFGRFADAPVAWQ
                     RYLEHGVLIRDVGIAGHLRVTVGTPAENDAFLAASAAVLAREEQ"
BASE COUNT         2097 a         3602 c         3423 g         1813 t
ORIGIN      
        1 ccgccgaggt tggcctgtgg tgatctcgtg gcgaaccagt atgaggtcgt cggctgcttg
       61 gcgcgcggtg gcgtgggttt ggtttacctg gccagggata cgcacctgga tggcaattac
      121 gtcgccctca aaggactgat caatactgat aatccgcggg cagtggcgct ggaggtggca
      181 gaacgccgat tcttgaccgc ggtcgaccac cccaacatcg tccgcatctt caacttcgtc
      241 acccaccagg agccggctac ccgcaagctg accggttaca tcgtgatgga gtatgttggc
      301 ggacagtcgt tggacgagat cagagacatc gccgcccaac gtcaggaccc attgggtggg
      361 ccgctgcggg tcgaatatgt catcgcctac ggcattgaga tcctcgctgc atttgaggac
      421 ctgcacggcc acgggctgct gtactgcgac atgagcccga gcaatgttat caggagcgcg
      481 aagcgcataa agctcatcga tctaggtgca gtccgcggga tccgcgacag atggtcgcca
      541 accgtctgga aaaggcgttt ccaagtcagc gaagaggagc gcaagaatgg actaacggtg
      601 caatcagatt tgtatgccgc cggcaagact ctcgaatact tgctcgaggt gagcgcggat
      661 gttccggaga ccgacacgga gctgaacacc agtcctatcg cgttcggtat caaatccttc
      721 cgccgagcgc tagcgcgggc cacccacaag gaggctcaca gacgtttccc gtccgcggcc
      781 gccatgtccc agcaattcag gggcgtgctg cgagaggttc tctcgctgcg agacgaagtg
      841 ccgcgccccg agccctcaac cgtgttcaca gatacagcgg tcttactcga cgccgggctc
      901 ggcatggtgc cgccgctgga gcgctggacg acctacggcg ccatcgacca tgatgccccc
      961 atggacgacg gtcgaccgac cgccgtcgcg gtggccatcg gcctaccagc accgcggccg
     1021 gccgcggacg atccagctgt gggttttctg acaacggtga cttcgaccga tcagcgccag
     1081 ctcatcgaac agttctcggc gttcccgaag gaatccgtcg aaatccagtt gcggacatgc
     1141 catgcatacc tagagctggg tgatctcggg aatgcccagt cgtgtctgga cactgccgaa
     1201 aaactttccc tcaaggccgc tgagtatgac tggagaatag cgtggcacca cggactactc
     1261 gcgctgacaa tgagccaggt caccgacgct gaatcaagat ttgacgacgt ataccgagct
     1321 ctgccaggag aggatgctcc gaagctggca ctcggcttct gctatgagcg aaccaagccc
     1381 gacgatgccc agcagtactt caaagccgta tggcgccggg accgctcgca agccagtgcc
     1441 gcgttcggtt tggcgcgcat ctgcctgcga gaaggcaagc ggacggacgc agtcgcgatc
     1501 ctcgacgaga tacccgaggt ctcccgccac tactatgcag cgaggatcgc cgccgttcga
     1561 gtcctatccg ggcgtctcac gaccggcccc ggaaatgaca acgggctgcc gactgtggcc
     1621 gatttccgtt cggtggtcaa ccggctgccc gacctgcacc tggacggggg cgataaggaa
     1681 ggaaccgccc gggaccgcct cacagcggcc gtccgggagg ttgcgctgag ctgggtctgc
     1741 gagaccgggg gcaatggtca gctggacggc ggtgacgtcc tcggtacgcc cgttggtgag
     1801 cggcggcttc gccaactgct cgaaaggtcc ttccgcgcgc tcgccgcccg gcaagcccct
     1861 gactccccag accacggtgc cctgatcgac ttggccaatg cggtccgccc ccggaccgcc
     1921 tggtgacgat gtggtcaatc ccataacggc ggattcgacg gccccggcgc cggcatcagc
     1981 gccgaaatcc accacagcca agaccctgtg ggtcctgtgc gcggcccttc tgatcgccac
     2041 gacggtgact tttggtacgt ctctgtgggt gttccggaat gtgcatggca ccgtcgagac
     2101 ggtccgtacc aatacggctc ctgcgatcct cgacgtgctg gcggccgagg aggcgctggt
     2161 tagggccgac agcgcggcga tcagcagctt tcagagcggt gaagtaaaga tcagcgggcc
     2221 gggcctgcag catcagaacc agcttacggt cgccagtcaa aacctggctc aagtcgccga
     2281 gcacaattcc gctggcccgc agggcagcca acggatccaa ttgctggagg gactgttgga
     2341 gtcctactcg ggctcgatcg gacaggccca cgcacacttc ggaaccgcag tcggtactgc
     2401 cgacctgtgg tcagcgtcac gcctgctgca taacggagac aactcgatcc tggccgaact
     2461 cgatcatctc cgagaagatc aggacaaagc attgatcgac caaataaaga cgagttcgat
     2521 gatatccggt aaccttctcg tatgggcggt accgatcgcc ttcctgttcg tgctgttggg
     2581 tgtgacccag gtcttcctga aacgccggtt tcggcgctcc gtgaacccgt tgttgctcct
     2641 ctccacgtta gtcgtagtcg gattatcgat ggtgacgtct ctcgcactcg tctcccagca
     2701 tcgactggaa agcacccgag ataccctggg ccgcgtgacg ggtgagtgga aggcggacat
     2761 ctccgcagca gatgcgcagg gacagtggac tctcgggcgc ctggtgatga tcgaatgcag
     2821 tcaggagaag ggcgggtgtg gccccacggt caaccgatcc gtcaccgatc gcgcgcctac
     2881 tgacggcacg gcagaccgcg cccacgacac acgggtggtc aggtggaacc gtgacgtcga
     2941 cgaacagact ggccctgcgg ccagaaactc ccacctctgg ttcttcattc cgctcatgtc
     3001 ggctttgatc gctgtgttga tcccattcgg actctggcca cgcatagagg aatacaggta
     3061 tcggccgaga tgacacaccc caggcgccga gtggctgcgc tctttatcgc ggtgatgctc
     3121 gtcaacgcca tcctgacagc gtgctctgct cctgggtcgg cgggttccgt aagcgtgctt
     3181 ggaccctgga gcggggagga ggaaaaagac ttcaggcaag tgctggatgc tttcacccgc
     3241 gagaccggag tgcaatatac atatcagggt actcgcgccc tgtacgaggt actgctttca
     3301 ggcgtccaga aaggaacacc gcccgatatt gcgattctgt tcagccctgg agagctgggt
     3361 caataccagc acagtggcaa actgcacata ctcgacgacg tgatcgcacc actgcagggt
     3421 gaatacagca aacaatggct aacgctacag agattgggta cgaacaatct ctatggagta
     3481 gtgatcaaag caaatctcaa gagcatcatc tggttcaacc cccacgttgc ccatccgacg
     3541 atccagacct gggaccaact cgtcgccttt gccgatatta gcgctaagac gggtggtaca
     3601 ccctggtgca tgggcatggt ctcgaccccg acctcaggat ggccgggcac ggactggatc
     3661 gaggatatcc tcatgcgcca gttcggcacc gacatcttcc agcagtgggc ctctggcaca
     3721 cttccctgga catcaccgca aatccgcaag tcatgggagg attggggcag gatcgcggtt
     3781 accgagggct ccaggtccac gctgctgacc gaggtcgtag acgaggggcg tccgatgttc
     3841 acgaacccac caggatgttt tctggatcac gacccctcgt tcatgacagt caactaccag
     3901 acatacgacg gatcaccgaa acccggtacc gatttcgact tcttcgagtt tccagctttc
     3961 ggttcgaatg gtggacagtt tgaggtgtcg gccgacatgg caagcatgtt caacgacaca
     4021 ccccaggcgc ggcagctgat cagatatctc gcgaccgaga aggcgcagaa aatctggcca
     4081 cgtacaggtg gtggcgcctt ctcagtgaac cgtaaggtga agtttgatgt ctacccagac
     4141 gatgtcagca aacgcatcgc ccacgatctg accactgctg acacattgtg cttcgacgcg
     4201 gctgacctca tgcctgcgac catgcgcaac gcattctatc gcgctgtatt ggagtacctg
     4261 agcgatccta cccagctgga ccagctgctt aaagaactcg acggggttcg actgggaata
     4321 ccgcaaggag aatggctgaa aattccgtgc ggacagtagc ggtcactgcc accagcgaca
     4381 tgacacgacg aggagagcga ctgtgccgga gctggccaaa ttcaccctcg agagtggagg
     4441 ttcggtacac gtcgacgtgg aggaggggcc aggcgtcaag cgggtggcac gggacggaaa
     4501 gatacccgaa gccaggaaga ctttcgaggc agggctgcac gaggtgcgca acgcggcgac
     4561 catcgcatta gcgcagtttc gggccatggc ccgccagccc gatgaggtag agatcacttt
     4621 tggcgtacga atggatgtac agatcggcgc ggtgattgcc aagactggca cggcgggaaa
     4681 tttcgaagtc aaactcacct ggcggtcaaa cgaccggagt acccatgacg agacagtcag
     4741 ctcccctgaa gctgctgaac taaaacgatc cgatccagtt gcgtagtagc tgcgcgcctg
     4801 aatcgccgga cttctcagga tggaactggg tcgcccacag cggcccgttc tccactgcgg
     4861 caacgaacgg ctcgccgtgc tcagcccagg tcaccagcgg ggcaggcagt ggctctgagc
     4921 tctccaactc ccagcggcga gcggcgtagg aatgcacgaa atagaaccgg gtgtccgcat
     4981 cgaggccggc gaacaaccgc gagcccaccg gcgccgtgac ggtgttccac cccatgtgcg
     5041 gcagcacgtc ggccttcagc cgctccacgg tccccggcca ctcaccgcac ccgtcggtct
     5101 gcaccccgtg ctcgacgcca cgactgaaca acacctgcat ccccacgcag atccccagca
     5161 ccggtcgccc accggctaac cgacgaccga taatccggtc acctcgcgcc gaacgcaagc
     5221 ccgccatgca tgcggcgaac gcgccaaccc cgggcaccac cagcccatca gccttcaggg
     5281 cggcatcaac atcagccgtg accaccacgt tcgcaccgca gcgggccagc gcccgctgcg
     5341 cagagcgcag attccccgac ccgtaatcca gcaccaccac cttggtcacc cctccacctt
     5401 tccccatccg cattcagcgg actcagcggg gtaatgaggt gctgctaatc cccgctgagc
     5461 cggctgaatg cgtcattctg ggagggtgcg cgaagaggat ttgatgcggc atctggcgga
     5521 tcttgtggcg cgtcgttatg agggggcgga gtcgtgggcg gatcgggtcg gtgtgttccg
     5581 gcgggcggtc gagttgctcg atccggtggt ccgggaggtc ttcatcgagg cgaacgcgat
     5641 gtttctggag cgcaccggtg agatcagccg ctacagcgcc gatcaggatg acggcagcgt
     5701 gggcgagcac tgggagctgt cgtggccccg gcagcgggaa gccgtctccc gagacggggg
     5761 tccggtcccg ccggtccagg taatcgcctg gttccggcgc agcttcaacc atgcccacct
     5821 gcgtggctcg accgccgggg actggccgct gcaggtgatc aacaccgagg acgccacccg
     5881 gcagctgccg atcgtgcgcg ccatcgtcga agcggagcta caccagagga tctatgaagg
     5941 gcgctatcca gtgatgccga tcgcggtgcg caagtacggc cttccctctg gccggtcagc
     6001 ggcccaggat cggtgaccag cgcatcacac cacggctgca gccttgcgcg ccgcgaccag
     6061 tacgggatcc catacgggcg agaatggtgg tgcgtagcta agatccagac cgatcatctc
     6121 ttcgacggtc atctcattcc acaacgcgac ggcgcacacg tcgacccgct tgcccgaccc
     6181 ttcccggccc accagctgcg tcccgagcag ccgcccggtg ccccgctcgg cgatcatctt
     6241 gacggtgatc gggaccgcgc ccggaaagta gccggcccgg gtggtggact ccactgtcac
     6301 gctcaccggc tggaaccccg cggcccgcgc ctcggcctcc agcaaccccg tccggctgac
     6361 ttccagctcg cacaccttgc tgaccgcggt gccgaccacg ccgggaaagg tcgcgtagcc
     6421 accgcccagg ttggtgccga tcacccgacc gtgcttgttg gcgtgggtcc ccaacgccac
     6481 atacacccgg cgctgcgaga cacggttcag cacctcgacg cagtcgccac cagcccacac
     6541 cccgtcgtga ccttgcaccc tcatccgtag atcggtcagc agaccgccgt gctcgcccag
     6601 cggcagcccg gccgcccggg ccagctcggt gcgaggtcgc acgcccaggc ccaacaccac
     6661 gaggtccgcg gggaacgttg cttccggggt gaccacagcc gatacccggc cgtccggtcc
     6721 cacatcgaat gcagtgaccg cactaccggt gaccacggcg atccccatgc actgcattgc
     6781 ctcgcgcacc agagcgccca tgtccgggtc gagggtcgac atcggctccg gagccccgtc
     6841 gatcaccgtt accgccaggc cacggcggac caatgcctcg gccatctcga taccgatgta
     6901 cccgccgccg accaccaccg cctgacgggg cgatctggtc aggccagcga ggacggccgc
     6961 gccgtcgtcg agcgtctgca ggccgtagat gcctggcgca tccgcccccg gcaggtccgg
     7021 gcgcaccggc accgcaccgg tggccagtac cagctcgtcg aacctggttt ggtagctggc
     7081 gccaccgtcg agttcggttg cggtgactgt gcaggagtcc agatcaattt cggtgatctc
     7141 ggttcggatt cgcaggtcaa tcccgttggc ctggtgctca gcggcgctgc gggcgatgag
     7201 gtcgtccgcg ctgtccacgt cgcccgccac ccagtacggg atgccacagg ccgaatagga
     7261 cacgtggcga ccggcctcga aggcaaccac ccggagcgcg tcccggccgg ctcgtcgcag
     7321 cgcctgcgag gccgcgctca tcccggtcgc gtcagctccg atgaccacta cctgccgcgt
     7381 cataccggct gccaggggct gattgtcttg tgcacgcagc acagcgtaga agtccggtca
     7441 gcctcgatca caccccgccg ggccgagcag gcggccgacc agatcgcggc gactgcgcac
     7501 accgaccttg tcgaagaccg atttgagatg atcttgaacg gtgtgcccag agatatgcaa
     7561 ggcatcggcg atggcgcggg tcgaggtgcc gcggagcacg agcctggcca cctcggcctc
     7621 ccgcgtggtg agcccgtgcg cggccagcat gagcggcact gttgcgcggg tcgcagtggg
     7681 ttcaacgatg acggcaatgc gagcatcgcc cggcggcccc tgcaagcggg atgcgtgcac
     7741 ggtgagccaa tgtccggctg cggttcgaac tcgagtactg ggcagcgccg tcgatggcgc
     7801 tgtgccccgc tctagcgctc ggagccttgc tgccacggtg tggacagcga ccggcagcgg
     7861 gagctcgacg gtaccgctgt tgtggatcaa cgacagtagg tgctcggctt ctggtgtgat
     7921 cgcgacaacg ctcaggtcgt cggcgagcag cacgacgccc ggaccgtggt catcgggagt
     7981 aaccggagca ccgcccagca acaccgcctg gcgcagcgcg tgggcaatgt gcgggccgag
     8041 tcgagcgagg agagcggctt ctgagggcgt gaagcccaac cgatgctcgg cgcggtgtag
     8101 gcacaggtaa ccccagcact gcgagccgac gaccaacgcc gcccgaagct catcaccgag
     8161 gcccagtggc cgcatgatgt cgcggtatcg cacgctggag cggcggtcgc gaccagtcgc
     8221 accatccagc gaggccacat gctccgccga ggcggccagc gatgtgaact tgttcacgtc
     8281 gtcgcaaccg aactcgttgt ccaggaacag cgaggtcacc gcgtcgagcg gctcttcggg
     8341 gcgcgcaccg gtgaacaaca gcgtctcggg atccgcagtg gcgaagaatg ccgcgtcgat
     8401 cggcatcagc acgcgcagca accgcagcac ctggtgctgc accgtgaggg cgtccacacc
     8461 gcggtggcag tgccggatga tgtcgtgctc ggcttgacgg gcgcgcgctc gcctcggcat
     8521 gacgaacagt gtcccgtcac cagaggggcc agggaatccc aacttcctgg gatggtcgcc
     8581 tggcccgacc agccgcacta tctgaccatg actaccgatc gcctcactcg caacaagcag
     8641 ctcgtcaacg acttcatcca ggaactgttc agcacaggcg atctcgacgc cgtggaccgc
     8701 tacctggatc cgcatttcgt caaccacgat ccgccgtttc ccggcgcacc agaggggccg
     8761 gagggcatgc ggaaagctgc cgccatgttc caccaggcgc tccccgactg gcacagcgac
     8821 gtagatcaac tgatcgccga gacagacatc gtcgtcgaaa ggttcaccgc cagcggcact
     8881 cacaacgggg aactaatggg cgcaccaccc acgggcaaga ccgtcaccct gcgcggagtc
     8941 aacattttcc ggatcgaggg cgagaagatc gtggaacggt ggggccgtct cgatgagctc
     9001 ggtctgctac gtcaactcga cctgatctag cgcttgatca cagcatccag gtgacgccgc
     9061 cggcggtggc gagtgctgct ccgatggcca gcagcacggc cagcaaccgt gagctgcgcc
     9121 aggtcgagac cattccaccg acgaggaaac cggccagcgc cagcagcagt agaccgaccc
     9181 agctcacagc acgcccttgg tggaggggac cccgccggcc cgcggatcag gctcgaccgc
     9241 agcgcgcagt gcacgggcca gcgctttgta ctgcgcctcg gtgacgtgat gcggatcccg
     9301 gccatgtagc acccgaatgt gcacggccag ttgcgcgtga aaggcgaccg tctcgaagac
     9361 gtgccggttg agcacagtcg ggtaattacc acccaccacg aagccggcca gcgcctcagg
     9421 ctccccgatg tgcacgcaat acgggcgacc tgaaacatca accgcgacgt gcgccaaggt
     9481 ctcgtccatc ggcacccacg catccccgaa acgccggata ccggccttgt cccccagcgc
     9541 gttacgcaat gcctggccga acacgatggc gacatcctcg acggtgtggt gggcgtcgac
     9601 gtccacgtca ccggttgccc ggacgaccag gtcgaacgcg gcatgctttc ccagcgagat
     9661 gagcatgtgg tcgaagaacg cgatgccggt gttcacctcg gtggttccgg tgccgtcgag
     9721 atcgagctcg acgagcaccg aggactcctt ggtcacccgc tcgatccgtg ctgtgcggct
     9781 cactgttcct cccgtgcgag aactgccgcg ctcgcggcca ggaacgcgtc gttttccgca
     9841 ggcgtgccca cagtgacccg aaggtgaccg gcgattccca cgtcacggat cagcacaccg
     9901 tgctccaggt agcgctgcca ggcaaccggc gcgtcagcga accgtccgaa caagacgaag
     9961 ttggcgtcgg agggcaccac ccgggcgccc aggtcctgca gcgctgcgat cacgcgttcc
    10021 cgctcggcca ccagcagcgc cacggattcc agcgtggagg atccgtgccg cagcgcggcg
    10081 cgagccgcca cctgggtgag cgcggagagg tgatacggca gccgtaccag gagcagggca
    10141 tcaatcaccg ccggcgcggc cgcgaggtag cccagccgtc cacctgcgaa ggcgaacgcc
    10201 ttgctcatcg tccggcagat caccagccgg tcagcgaact gctcgagcag cccgactgcg
    10261 ctcggtcgcg tgctgaattc gccgtacgcc tcgtcgacca ccacgatgcc ccgcgcggcg
    10321 acgatcactg cggcgagatc ggcagacggt atcgactgcc cggtgggatt gttcgggctg
    10381 gtgacgaaca gcacgtccgg ccggtgctcc tcgatggccg ccacggcgcc ggcaggatcc
    10441 agggagaaat ctgcccgcct gggcgtcgga atccaccgtg tacgggtacc tgaagagatg
    10501 atcggatgca tcgagtaaga cggggtgaag cccagtgcgc tgcgcccagg cccgccgaaa
    10561 gcctgtagca cttgctggat gatctcattg gagccgtttg ccgcccacag gttcgccgcg
    10621 gtcagcggca ccccggtacg tccggtgaga tagtcggcca gatccgtgcg caacgcgacg
    10681 acgtcgcggt ccggatagcg gtgcaggtct tgagccgcct gctgcaccgc ggccgccacg
    10741 tcggcgacca gacccggcgg cggcgggtaa ggattctcgt tggtgttcag ccgcaccgcg
    10801 acatcaagct gcggcgcacc gtatggactg cacccccgca gctcctcccg caacggcaac
    10861 tgatcgagcg tcactccgct ccccagcgcg ccattccctt cccgacatgg agacatatcg
    10921 gggttttcga gggcc
//
LOCUS       DASVXZ010000979         3205 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1518291, whole genome shotgun sequence.
ACCESSION   DASVXZ010000979 DASVXZ010000000
VERSION     DASVXZ010000979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3205
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1518291"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..1552)
                     /locus_tag="VF788_20470"
     CDS             complement(95..1552)
                     /locus_tag="VF788_20470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936506.1"
                     /translation="MSRTARLAAQAGRGVAMRLINALRKLERRTRPVDPEYAGILRRR
                     WAELPEHVKTPGQFLGRHAVGCEGTHGVFPRCNLACTPCYHSRDANRVRVDGAHTISE
                     VSKQMALLRRLRGPRAHAQLIGGEVTLLDPDDHAETLLTMRRYGREPMSMSHGDFDPD
                     YLERLVLGEQGQRRRPRLKRISFAGHFDMMMFGRRGIPRPGGERELNPYRQRFVDMFK
                     HLRAKHGVRFFLAHNMTVTPVNLDQVAELVRDCHAMGFGMFSFQPAAFVGDDRRWHEN
                     YEQVGMEEVWREIEKGAGTALDYTVIQHGDLRCNRAAYGFYVGSRWHPFLSGDAGDLA
                     AREAFFRYFGEVNFAGEELPDLIGKVARTTVRHPAVAVVAVAWLTHLVRRTGGLRTLL
                     RHGVRPVSFVVHQFMDAADVAPAWELMQRGETATDPRVLAAQERLAACHYAMAHPETG
                     ELVPACVQHCVLDPVENVELRRLLPIVNSTDVRAS"
     gene            1639..>3205
                     /locus_tag="VF788_20475"
     CDS             1639..>3205
                     /locus_tag="VF788_20475"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX8936507.1"
                     /translation="MTRFGLCGGTYSNPYALRAFVGDARARGAERLWCLGDLGAYGAE
                     PEAIWPLLIDNGIECIAGNYELAIGQGEPDCGCGYADDEDNAFAAIAYDYTLRHTSAE
                     FAAWMRTLPTEHRETVAGVALHLVHGSTLAVNDFWWESLPDELHQLRIEESGADVICC
                     THSGLPWIRRFRDTLVINVGVLGRPANDGGQHVWYALLDVLDGHATAELVALDYDWPA
                     HSASMRDAGLPEAFTQTIETGWWSTCLEIVPPAERSRGRFQLYKSAMPDFAGEQVSWG
                     SAPEIPDDGVPVLPLFGSALFPPRLWIYTNFHCNLACSYCSVASSPQARRRSLGLPRF
                     RELVDEAVREGFTELYVTGGEPFLERDLVEMLLYATERLDVVCLTNAMLYQGWRRTQL
                     ERLAGRRRLILQTSLDGAQPSLHDANRGLGAWVKAMEGLDVALSLGLPVRVGMTETPQ
                     NGTEIEPLRALLAAKGICGAAFAVRPLVRRGHSTDGVAIDTDNTVPELTVTADGWHWH
                     PAGADLDTSPDMLL"
BASE COUNT          521 a         1093 c         1063 g          528 t
ORIGIN      
        1 cacataccgg ccggacaacc cgtcgagatc gattgcccgg ccggtgtgcg cgtccggcag
       61 cacgagccct gccagcggca ccgggtgatc gatctcacga ggcacggacg tctgtgctgt
      121 tgacgatagg aagcaacctg cgcagctcga cgttctccac cgggtcgagc acgcagtgct
      181 gtacgcacgc gggcacaagc tcgccggttt cgggatgcgc catcgcgtag tggcaagccg
      241 ccagcctctc ctgcgcggcg agaacccgcg gatcggtggc cgtctcgccg cgttgcataa
      301 gctcccaggc cggcgcgacg tcggcggcgt ccatgaactg gtgcactacg aacgacaccg
      361 gtcgcacacc gtgccgcagc agggtccgca gaccgccggt gcgccgcacg aggtgggtca
      421 gccacgcaac cgcgaccacc gcgacggccg ggtggcgcac ggtcgtgcgg gccaccttgc
      481 cgatcaggtc gggcagttcc tctccggcga agttcacctc accgaagtag cggaagaacg
      541 cctccctggc ggcgagatcc ccagcgtcac cggagaggaa cggatgccac cgcgaaccga
      601 catagaaccc gtaggcagcc cggttgcagc gcaggtcgcc gtgctggatc acggtgtagt
      661 ccagcgcagt acccgcccct ttctcgatct cccgccagac ctcctccatg ccgacctgct
      721 cgtagttctc atgccagcgc cggtcgtccc cgacgaaggc cgcgggctgg aaggagaaca
      781 tgccgaaccc catcgcatgg cagtcacgca ccagctcggc aacctggtcg agattcaccg
      841 gggtgaccgt catgttgtgt gcgaggaaga aacgcacgcc gtgcttggcg cgcaagtgct
      901 tgaacatgtc gacgaaccgt tgccggtagg ggttgagttc gcgttcaccg cccgggcggg
      961 ggatgccgcg ccggccgaac atcatcatgt cgaagtgccc ggcgaaggag atccgcttca
     1021 gccggggacg tcgtcgctga ccctgctcgc ccagtactag gcgttccagg tagtcaggat
     1081 cgaagtcgcc gtgggacatg ctcatcggct cccgcccgta ccggcgcatc gtgagcagcg
     1141 tctccgcgtg atcgtccggg tccagcagcg tcacctcacc accgatcagc tgggcatggg
     1201 cccgggggcc gcgcagccgg cgcagcagcg ccatctgctt gctgacctcc gagatggtgt
     1261 gcgccccatc cacccggacc cggttggcgt cgcgcgagtg atagcacggt gtgcacgcga
     1321 ggttgcaccg cgggaacacg ccgtgggtgc cttcacaccc gaccgcatgc ctgcccagga
     1381 actgcccggg agtcttcacg tgctcgggga gctccgccca gcggcggcga agtatgccgg
     1441 cgtactccgg atcgaccggc ctagtacgac gttcgagctt tcgcaacgca ttgatcagtc
     1501 gcatcgcaac gcccctcccg gcctgggccg ctagccgtgc cgttcggctc atccatagct
     1561 tttcgctgat agggccgaac cggttcaccc gccaggtcag aacacgcaaa cacacgcacg
     1621 atctccgagg agagctcaat gacgaggttc gggctgtgcg gggggaccta ctccaacccg
     1681 tatgcgttgc gggcctttgt gggcgatgcg cgggcgcggg gcgctgaacg gctgtggtgc
     1741 ctgggtgatc ttggagccta cggggcggaa ccggaggcca tctggccgct gctcatcgac
     1801 aacggcatcg agtgcatcgc cggtaactac gagctcgcaa tcggtcaggg tgagccggac
     1861 tgcggctgcg ggtacgccga cgatgaggac aacgcctttg ccgcgatcgc ctatgactac
     1921 acgctgcggc acacgtcggc ggagttcgcg gcctggatgc ggaccttgcc cactgagcat
     1981 cgggagaccg tcgcgggtgt tgcgctgcac ctggtgcacg gctccaccct ggctgtcaac
     2041 gacttctggt gggaatcgct gcctgacgag ctgcaccagt tgcggatcga ggaatccggc
     2101 gcggacgtga tctgctgcac ccactccggg ctaccctgga tcaggcgctt ccgggacact
     2161 ctggtgatca acgtcggagt actgggccgg ccggccaacg acggtggaca gcacgtctgg
     2221 tacgccctgc tcgatgtcct cgacggccac gccaccgcag agctcgtcgc gctggactac
     2281 gactggccag cgcattccgc gtcgatgcgc gacgccgggc tccccgaagc gttcacccag
     2341 accattgaga ccggatggtg gagcacctgc ctggagatcg tgccgccagc ggagcgctct
     2401 cggggccgct tccagctcta caaatcggcg atgcccgatt tcgccggcga gcaggtgtcc
     2461 tggggttccg ccccggagat accggatgac ggcgtcccgg tgcttccact gttcggatct
     2521 gcgctcttcc cgccccggtt gtggatctac accaactttc attgcaacct ggcctgcagt
     2581 tattgctccg tcgcgtcgtc tccgcaggcc cggcgccggt ccctgggcct accccggttc
     2641 cgcgagctgg tcgacgaggc ggtccgggag ggtttcaccg agctgtacgt caccggcggc
     2701 gagccgttcc tcgaacgcga cctcgtcgag atgctgctat acgccaccga gcggctcgac
     2761 gtcgtctgcc tgaccaacgc gatgctctat cagggctggc ggcgtaccca gctggagcgc
     2821 ctcgccggac ggcgccgact gattttgcag acctcgctgg atggcgcgca gccctccttg
     2881 cacgacgcca accgggggct cggcgcatgg gtgaaggcga tggagggtct cgatgtagcg
     2941 ctctcgctgg gcctgccggt gcgggtcggg atgaccgaga cgccgcagaa cggaaccgag
     3001 atcgagccgt tgcgggcgct gctggccgcc aaagggatct gtggtgcggc cttcgcggta
     3061 cgcccattgg tcaggcgggg gcactccacc gacggggtgg ccatcgacac cgacaacacc
     3121 gtgcccgagc taaccgttac ggccgacggc tggcactggc accccgccgg cgccgacctc
     3181 gacacctcac cggacatgct gttgg
//
LOCUS       DASVXZ010000980         1578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1426647, whole genome shotgun sequence.
ACCESSION   DASVXZ010000980 DASVXZ010000000
VERSION     DASVXZ010000980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426647"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1216
                     /locus_tag="VF788_20480"
     CDS             <1..1216
                     /locus_tag="VF788_20480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003096228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX8936508.1"
                     /translation="RLRGVVLIGELALDGRLRPVRGVLPAVLAARRVGIDEVVVPTAS
                     LAEAALVNGVRVYGATRLTDVLRWLQDPSAGLASPDPGNPAPPPAAPDLADVLGQGDA
                     RWAVEVAAAGGHHLLLTGPPGTGKTMLAQRMVGLLPMLTDTEALEVTAVHSVAGLLAP
                     DTPLITVPPFVAPHHTSSVASLVGGGSGLAKPGAVSRAHRGVLFLDEVAEFGPRSLEA
                     LRTPLEDGEVRLARRDGVVRYPARCQLVLAANPCPCAPPDERDCICAPSARRRYLGRL
                     SGPLLDRVDVRVAMRPLKDMGQTDAEPESTAVVRERVLLARTAARARWAGTGWSTNAE
                     VPGPVLRRRFGLPRAVTEPIEAALHRGLVTARGADRTLRLAWTLADLAGRDRPRAEDV
                     SAAMGLRDRSAA"
     gene            1213..>1578
                     /locus_tag="VF788_20485"
     CDS             1213..>1578
                     /locus_tag="VF788_20485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015104436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA processing protein DprA"
                     /protein_id="HEX8936509.1"
                     /translation="MTRGDLELRGARAYLSRVAEPPAPALSELIDEVGPVRASRLVAA
                     GRVPDQVAAETGARRADDRAEADLAAIAALGGRLVVPEDVEWPAEGFACFGTLAAQAD
                     KRWRAPVALWTRGAGRLDEL"
BASE COUNT          199 a          517 c          610 g          252 t
ORIGIN      
        1 tcggctacgc ggcgtggttc tgatcggaga gcttgccctg gatggccggc tacgtccggt
       61 ccgtggcgtg ctgccggccg tgctcgcggc ccgtcgcgtg ggcatcgacg aggtggtggt
      121 gccgaccgcg tctctggctg aggcagcgct ggtcaacggt gtgcgggtct acggcgcgac
      181 gcgcctcaca gacgtgctcc gctggttaca agatcccagc gccggcctag ccagccccga
      241 tccggggaat ccggcaccgc cgccagctgc cccggacctc gcggacgtgc taggacaggg
      301 tgacgcccgc tgggcggtag aggtcgccgc cgcaggtggt caccatttgc tgctgaccgg
      361 gccaccgggg acgggcaaga ccatgctggc ccagcggatg gttgggctat tgccaatgct
      421 caccgacacc gaggcgctcg aggtgactgc ggtgcactcg gtagctggtc tgctcgcccc
      481 ggacaccccg ctgatcacgg tgccaccgtt cgtcgcaccc caccacacca gctcggtagc
      541 atcgctggtg ggcggcggtt cggggctcgc gaaaccgggt gcggtgagta gggcgcatcg
      601 tggggtgctg ttcctcgacg aggtcgctga gttcggtccg cggtccctgg aagcgctgcg
      661 cacccccctg gaggacggcg aggtccggtt agcccgccgc gacggggtgg tgcgttaccc
      721 ggcccggtgc cagctggtgc tggcggccaa cccttgccct tgcgcacccc ccgacgagcg
      781 cgattgcata tgcgcccctt cagctcgcag acgctacctg ggccggttgt ccgggccatt
      841 gctggaccgg gtcgatgtgc gggtcgcgat gcgtccgctg aaggacatgg gtcagaccga
      901 cgcagagccg gagagcaccg cggtagtgcg ggaacgggtc ctcctggccc gcaccgccgc
      961 ccgagcgcga tgggcgggaa ccggctggag caccaacgcc gaggtgcctg gtccggtgtt
     1021 gcggcggcgg ttcgggctgc cgcgggcggt gaccgaaccg atcgaggctg cgctgcatcg
     1081 aggcctggtg acggccaggg gagcggaccg tacgttgcgg ttggcctgga cgctggccga
     1141 cctggctggg cgcgatcgtc ctcgggccga agatgtgtcc gccgcgatgg ggctccggga
     1201 tcggagtgcg gcgtgacgcg gggggacctg gagctgcgag gggctcgggc ctatctcagc
     1261 cgagtcgctg agcctccggc tccggccctg tccgagctga tcgacgaggt cggtccggta
     1321 cgggcgagcc gattggtggc cgccgggcgg gtgcctgacc aggtggctgc ggagaccggt
     1381 gcccgccggg cggacgatcg agccgaggct gacctggctg cgatcgctgc actcgggggc
     1441 cggttagtgg ttcccgagga cgtcgagtgg cctgccgagg gattcgcctg cttcggcacg
     1501 ttagctgccc aggccgacaa acgctggcgt gccccggtgg cgctctggac gcgaggagct
     1561 ggccgcctcg atgagctc
//
LOCUS       DASVXZ010000981        12311 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1328165, whole genome shotgun sequence.
ACCESSION   DASVXZ010000981 DASVXZ010000000
VERSION     DASVXZ010000981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 12311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12311
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1328165"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1862
                     /gene="ctaD"
                     /locus_tag="VF788_20490"
     CDS             108..1862
                     /gene="ctaD"
                     /locus_tag="VF788_20490"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HEX8936510.1"
                     /translation="MTAVAPQPIATRPRPVRPQVKGSTLLGLLQTTDHKVIGMLYLVT
                     SMAFFFIGGSMAMLIRGELARPGMQFLSNEQYNQLFTMHGTIMLLLYATPILFAFANL
                     VLPLQIGSPDVAFPRLNAFSYWAFLFGGLIVLSGFLTPGGAADFGWFAYTPLSNAIHS
                     PGAGADLWIMGLVLAGLGTILGGVNMVTTVVCLRAPGMTMFRMPIFTWNIFVTSLLVL
                     LAFPILTAALLGLEADRRLGAHVFDPANGGAILWQHLFWFFGHPEVYIVALPFFGIVS
                     EIFPVFSRKPLFGYKTLIFATLSIAALSVVVWAHHMYATGAVLLPFFAFTTFLIAVPT
                     GIKFFNWIGTMWRGQLTFETPMMFSLGFLVTFLLGGLTGVLLAAPAIDFHVSDTYFVV
                     AHFHYVLYGTIVFATFAGIYFWFPKMTGRMLDEPLGKFHFWATFIGFHLTFLVQHWLG
                     NEGMPRRYADYLPTDGFTTLNMVSSIGAFVLGASTLPFLWNVFRSYRYGEVVTVDDPW
                     GYCNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMAERIRGEAHVGGHGHPTAP
                     SEVAAQAVLRNGGDPREK"
     gene            1883..3094
                     /gene="serB"
                     /locus_tag="VF788_20495"
     CDS             1883..3094
                     /gene="serB"
                     /locus_tag="VF788_20495"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009945485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEX8936511.1"
                     /translation="MLVTVTGRDKPGVVSVIFSALTKHGVDILDVEQVVIRGRIILGV
                     LVATTADSEDLQEAAEHAMASIGMHLEVEIGADALGAMIRPSTHVVLVLGRPVTARAF
                     TETTRSLAALGINIDAIRRIADYPVTGLELLVSVPSNGNPEEADAALRATLVRLAAQG
                     EVDLAVERVGIARRAKRLVVFDVDSTLVQGEVIEVLAEHAGCGAEVRAVTQAAMRGEL
                     DFTQSLRRRVALLEGLPASVLGEVTNALELTPGARTTVRTLKRLGFRCGAVSGGFTQI
                     VRPLAQELGLDFCTANELEIDHGKLTGQVIGPVVDRSGKADALRQAAEHFGVPLAQCV
                     AVGDGANDIDMLTTAGLGVAFNAKPALREVADAAITQPFLDVVLFVLGVTRDEVEAAD
                     AAEGLLRRVPL"
     gene            3091..3936
                     /locus_tag="VF788_20500"
     CDS             3091..3936
                     /locus_tag="VF788_20500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-tRNA hydrolase"
                     /protein_id="HEX8936512.1"
                     /translation="MSGDATDRSHRHSQLAQLGPLAARYASWLDLPAELSGDLVDEDP
                     AAVRAMPLILRIERDAMPSRTALLEAAASAAVALCLDEHSQPGGPWHPEVAPWVGGRI
                     RKVSRRARGAHWVAVTDLPGITVERGGGEVRALLPWLVTDTPRAVTRLQVGGTDVPSD
                     DPGSPPEGHSVLWLSPEPAMTLGKAAAQVGHATMLLAALLAVQGPLAALDCWAADGYR
                     CAVRTASPRQWAALAAEERPDLAWRKRKVLAVRDAGFTEVPSGTITVAAQWLPCARHG
                     PAGSG"
     gene            complement(3928..5997)
                     /locus_tag="VF788_20505"
     CDS             complement(3928..5997)
                     /locus_tag="VF788_20505"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005440453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEX8936513.1"
                     /translation="MVTLGVASAAVSGPTTTVPDVGVLLATAVQALGGTERAGQVLMA
                     EAVDRAIRTGEHLAVQAGTGTGKSLAYLVPAIRHAVAAETTVVVCTATIALQRQLVDR
                     DLPRLADALEPLLGAAPSFAILKGRRNYLCLHRLNTGPVDEGEDLFDAAAAASPTSML
                     GRQIARLHEWSSHTDTGDRDELVPGVTDRAWRQVSVGARECLGLSRCPVGMDCFAEQA
                     RSRAGRAEVVVTNHALLAIDAMGDRPVLPDHDVVVIDEAHDLVDRVTSAATEELTASM
                     IETAARRCGRLIDQQHADELAAAGDGLALLLGDASVQRWDILGTAVAAGLTAVRDAAH
                     RCTTALGSERREDPDAAARRRLALTALEQVYSASARTLDAFPDSAADRHDVVWLAEET
                     VRGRVLRVAPLRVAELLQQRLFAKRTVVLTSATLTLGGTFDALAAQWGLPRQRPVSAP
                     ATGTATKRPPPADDDAGPAWTGVDAGSPFEHRRAGILYTAAHLPPPGRDGLAPACIDE
                     LAELVTAAGGRALGLFSSMRAAKQAAEVLRSRVEMPILCQGDDATGLLVHQFSQDEAT
                     CLFGTLSLWQGVDVPGRSLSLVVVDRIPFPRPDDPLSSARQRAVAARGGNGFLAVAAT
                     HAALLLAQGAGRLLRSTEDRGVVAILDPRLVTARYGTFLRASLPPFWPTTDPAVARAA
                     LTRLVST"
     gene            complement(6062..7344)
                     /locus_tag="VF788_20510"
                     /pseudo
     CDS             complement(6062..7344)
                     /locus_tag="VF788_20510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006239605.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
     gene            7386..7697
                     /gene="clpS"
                     /locus_tag="VF788_20515"
     CDS             7386..7697
                     /gene="clpS"
                     /locus_tag="VF788_20515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HEX8936514.1"
                     /translation="MTTPVELEQTQVDPAVDPVADEAGVEDRPWLTIVWNDPVNLMSY
                     VTYVFQQLFGFSRDEATKLMLDVHHKGRAVVTSGSRDKVEIDVAKLHGAGLWATMQKE
                     A"
     gene            7694..8230
                     /locus_tag="VF788_20520"
     CDS             7694..8230
                     /locus_tag="VF788_20520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005165656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2017 domain-containing protein"
                     /protein_id="HEX8936515.1"
                     /translation="MNGWRRRGGALVTTFSEREAGLLRGLVGQVRDLLAARVAANPQD
                     ELAELTGIIAGPTTAPADRVLARLLPDFHREDTALSGGLRALHEPELLATKDGAVGVV
                     LATCPPRGGRLRLSEQQAQAWLTALNDVRLALGTVLEVTEDMPDELPPEDPRVPHLAV
                     YHWLTWVQDSLIQAMATT"
     gene            8240..8695
                     /locus_tag="VF788_20525"
     CDS             8240..8695
                     /locus_tag="VF788_20525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010693745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HEX8936516.1"
                     /translation="MLRISRDLVDAMVAHARRDHPDEACGVLAGPAGSGRPERFIEMT
                     NAERSPNFYRFDSMEDLRLERDLESRDEERVVIYHSHTATEAYPSRTDVNIAGYPEAH
                     YVLISTRHPDMHELRSYRIADGEVTEEPVEVVESYMFSHTGADDIPDVP"
     gene            8791..9093
                     /locus_tag="VF788_20530"
     CDS             8791..9093
                     /locus_tag="VF788_20530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020640924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX8936517.1"
                     /translation="MAVTVSVPTILRTHTEGEKSVQASGSTVGEVIEDLESRHSGIKG
                     RLVKDGSLHRFINVYVNDEDVRFVGGLEAKVQDGDNLTILPAVAGGHDGCEWQIAL"
     gene            9133..10083
                     /locus_tag="VF788_20535"
     CDS             9133..10083
                     /locus_tag="VF788_20535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020657349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase"
                     /protein_id="HEX8936518.1"
                     /translation="MARYDSLLDALGDTPLVGLPHLSPSSEVRLWAKLEDRNPTGSVK
                     DRPALAMIEDAERTGRLTKGCTIMEPTSGNTGISLAMAAKLKGYRLVCVMPENTSIER
                     RQLLEAYGAEIIFSPAAGGSNQAVARAKELAAAHPDWVMLYQYGNPANPAAHYRTTGP
                     EILRDLPTVTHFVAGLGTTGTLVGVGRYLREHKPDVQIIAAEPRYGELVYGLRNLDEG
                     FVPELYDPEVLTGRFSVGSFDALRRTRELLEIEGIFAGISTGGILHAALAVAEKAAGT
                     GEAADIVIVVCDAGWKYLSTGAYSGDLEEAAARLDGQLWA"
     gene            10206..10865
                     /locus_tag="VF788_20540"
     CDS             10206..10865
                     /locus_tag="VF788_20540"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020422439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX8936519.1"
                     /translation="MSADVPDVRSVGRGRSRVVPARPGQAAMIIAAFTGLLYATEAVD
                     TLLGGALDGDGIRPRQLDGLDGILWAPLLHDGWQHLVANTVPVLVLGFLVLASGVGQF
                     FAVTVTIWLVGGFGTWLIGSPHVHLGASILVFGWLVFLLARGFFARSPAQILLAVALF
                     AVWGSVLWGVLPGGYGISWEGHLSGAVGGLIAAQLVARADRPRVDTKPSRIDQPRLNG
                     S"
     gene            10862..11674
                     /gene="murI"
                     /locus_tag="VF788_20545"
     CDS             10862..11674
                     /gene="murI"
                     /locus_tag="VF788_20545"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017987372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEX8936520.1"
                     /translation="MIGPDAPIGVFDSGVGGLTVARAIADQLPRERLHYVGDTANGPY
                     GPLPIAQIRSHALAVADELVNSGVKLLVIACNTASAACLVDARERYSIPVVEVVRPAV
                     RRAVAATHSGRVGVIGTQATIRSRAYHDAFAAAPHIEVTGVACPRFVDFVERGMTSGR
                     QILGLAQSYLEPLQRVSVDTLVLACTHYPLLTGVLQIVMGDGVTLVSSAEETAKDVLR
                     VLTDAERLRTEPEEPEHVFTATGDPVTFARLARRFLRPSLVVTAAAGGPRGA"
     gene            11676..>12311
                     /locus_tag="VF788_20550"
     CDS             11676..>12311
                     /locus_tag="VF788_20550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8936521.1"
                     /translation="MLLTVLGCSGSVPAPESPASSYLVRAEGTSVVLDLGNGAFGALQ
                     RYIDPFTLDGLLFSHLHPDHCADVSALTVYRRYHPNPPPCDVVPLYGPRDAAERLVAA
                     YAPNADERKTTDLSDLYSFRSYGEAVMIGPFEVRAVPVEHPCEAYALRIDHAGRILVF
                     SGDTGPCRQLVELATGADVLLAEASWPDRPGNPPGIHLSGRDAGEAAAAAGV"
BASE COUNT         1914 a         4053 c         4197 g         2147 t
ORIGIN      
        1 agtgctgcgg ctactatctg tgggagcccg cgatgacgcc gtcagcgcgg gccggtagcg
       61 tgcacgacga gtgcccgatg caccgcgagg cagccaggag gcaacttgtg acggccgttg
      121 cgccccagcc gatcgccacg cgtccgcgtc cggtgcggcc ccaggtcaag gggtcgacct
      181 tgctcgggct gcttcagacc accgatcaca aggtgatcgg tatgttgtat ctggtcacct
      241 cgatggcgtt cttcttcatc ggtggcagca tggccatgct gatccgtggt gaactagctc
      301 gtccgggcat gcagttcctg tccaacgagc agtacaatca gctgttcacc atgcacggca
      361 ccatcatgtt gctgctgtat gccacgccga tcctgttcgc attcgccaac ttggtgcttc
      421 cactgcaaat cggctcaccg gacgtggcct ttccgcggct caacgccttc tcctactggg
      481 cgttcctctt cggtggcctg atcgtgttgt ctgggttcct gacacccggt ggggcggccg
      541 atttcggctg gtttgcctat acgccgctgt ccaacgcgat acattcgccg ggcgcggggg
      601 cggatttgtg gatcatgggg ctggtcctcg cggggctggg caccattctg ggcggggtca
      661 acatggtcac cacggtggtc tgccttcgtg cgcccgggat gaccatgttc cggatgccga
      721 ttttcacctg gaacatcttt gtcacctcgc tgctcgtgct gctcgcgttc ccgatcctga
      781 ccgcggcgct gctgggtctg gaagctgatc ggcggctcgg ggcgcatgtg ttcgacccgg
      841 ccaatggtgg cgccatcctc tggcagcacc tgttctggtt cttcggccac cccgaggtct
      901 acatcgtcgc gttgccgttc ttcggcatcg tgtcggagat tttcccggtt ttcagccgta
      961 agccgctgtt cggttacaag acccttattt tcgcgacgct gtcgatcgcc gcgctctccg
     1021 tggtggtatg ggcacaccac atgtatgcca cgggtgccgt gctgctgcct ttcttcgcgt
     1081 tcacgacgtt cctcatcgcg gtgcccaccg gcatcaagtt cttcaactgg atcggcacca
     1141 tgtggcgggg gcagctcacg ttcgagaccc ccatgatgtt ctctctcggt tttctcgtca
     1201 ccttcctgct cggcggcctg accggtgtcc ttctagccgc gccggcgatc gacttccacg
     1261 tgagcgacac ctacttcgtg gtggcgcact tccattacgt gctgtacggc acgatcgtgt
     1321 tcgccacctt cgccggaatc tatttctggt tccccaagat gaccggccgg atgctcgacg
     1381 agccgctggg caagttccat ttctgggcga cgttcatcgg gttccatttg acgttcctgg
     1441 tgcagcactg gctcggtaac gagggcatgc ctcgtcgcta cgccgactac ctgcctaccg
     1501 acggtttcac cacgctgaac atggtgtcct cgatcggcgc gtttgtgctg ggagcgtcga
     1561 ccctgccgtt cctgtggaac gtcttccgca gctaccgcta cggcgaggtc gtcaccgtcg
     1621 acgatccatg gggttactgc aactcgttgg aatgggccac ctcgtgtcca ccaccacggc
     1681 acaacttcac cgaattgcct cgcatccgtt ccgagcgacc cgccttcgaa ctgcactacc
     1741 cgcatatggc ggagcggata cggggtgagg cgcatgtcgg tggccatgga cacccgacgg
     1801 cgccgagcga ggtggcggca caagccgtgc tgcgaaatgg cggggacccg cgcgaaaagt
     1861 gaccggtagc ccaaggacga ccctgctggt aaccgtcact ggacgggaca agcccggggt
     1921 cgtgtcggtg atcttttctg cgctcaccaa gcatggcgtc gacatcctcg acgttgagca
     1981 ggtcgtgatc cggggccgga tcattctcgg cgtgctggtg gcgaccacgg ccgattcgga
     2041 ggacctgcag gaagccgccg aacatgccat ggccagcatc gggatgcacc tggaggtcga
     2101 gatcggcgcc gacgcgctcg gcgcgatgat ccgtccatcc acccatgtcg tgttggtgct
     2161 gggccggccg gtgacggcgc gagcctttac cgagaccacc cgctcgttgg ccgctctggg
     2221 catcaacatc gacgctatcc ggcggatcgc agactatccg gtcaccgggc tagagctgct
     2281 ggtgtcggtg ccgagcaacg gcaatcctga ggaggccgac gccgcgctgc gtgccacgtt
     2341 ggtcaggctg gccgcgcagg gtgaggtgga cctcgcggtc gaacgggtcg gtatcgcccg
     2401 ccgggccaag cgcctggtgg tcttcgatgt cgactcgacc ctggtacaag gcgaggtgat
     2461 cgaggtcctc gccgagcacg ccggctgcgg cgcggaggtt cgcgcagtca cccaggcggc
     2521 gatgcgtggg gagctggact tcacccagtc gctgcggcgc cgagtcgcgt tgctggaggg
     2581 cctgcccgcg agtgtgctgg gggaggtgac caatgcactg gaactcacgc cgggggcgcg
     2641 caccacggta cgaaccctca aacggctggg atttcgctgc ggagcagtct ccggcggctt
     2701 cacccagatc gtgcgccccc tcgcccagga gctgggactg gacttctgca ccgccaacga
     2761 gctcgagatc gaccacggga agctcaccgg gcaggtcatc ggcccggtgg tggatcggtc
     2821 cgggaaggct gacgcgctgc gccaggcggc ggagcatttc ggggtcccgc tcgcccagtg
     2881 cgtggcagtc ggggacggcg ccaacgacat cgacatgctc accaccgccg gtctgggtgt
     2941 cgcattcaac gccaaacccg cgttgcgtga ggtcgcggac gccgcgatca cccagccgtt
     3001 cctggacgtc gtgctgttcg tgctgggggt gacccgggac gaggtagagg ccgccgacgc
     3061 tgctgaggga ctgctgcgca gggtgcccct gtgagtggcg atgcgaccga taggtcgcat
     3121 cgccactcac agctcgcaca gctggggcct ctcgcggcca ggtacgcgag ttggctggat
     3181 ctgccggcgg agctgtccgg tgacctcgtt gatgaggacc cggcggcagt gcgcgcgatg
     3241 ccgctgatac tgcggataga gcgcgacgcc atgccatctc gcaccgcgct gctggaggct
     3301 gcggcctcgg ctgcagtggc gctgtgcctc gacgagcatt cgcaacctgg cggtccgtgg
     3361 caccccgagg ttgcgccgtg ggttggcggc cggatccgca aggtcagccg gcgggcgcgc
     3421 ggcgcgcact gggtcgcggt gactgatctg ccaggtatca cggtcgagcg gggcggtggc
     3481 gaggtgcgcg cgttactgcc ctggctagtt acggatacac cgcgagcggt gacccggctg
     3541 caggtcggcg gcactgatgt gccatccgac gaccctggct caccgccgga agggcactca
     3601 gtgctctggc tctcgccgga accggcgatg acgctgggta aggcagccgc tcaggtaggg
     3661 cacgccacga tgctgctggc cgcgctgctg gccgtccagg gcccgctcgc ggcgctggac
     3721 tgttgggcag ccgacggcta ccgctgcgcc gtgcgcaccg cctctccgag gcagtgggct
     3781 gcgttggcag cggaagagcg accggatctg gcctggcgga agcgcaaggt gctcgcagtg
     3841 cgcgacgccg gcttcaccga ggtgcccagc ggcaccatca ctgtcgccgc tcagtggctg
     3901 ccatgcgccc ggcacggtcc ggcgggttca ggttgagacg agacgagtta gcgcggctcg
     3961 tgctacggcg gggtcggtgg tgggccagaa cggcggcaag gaggcgcgaa ggaaagtgcc
     4021 gtaacgggct gtgaccagcc tggggtccag gatcgccacc accccgcgat cctcggtcga
     4081 gcgcaacagc cggccggcgc cctgtgccaa aagcagggcg gcgtgcgtcg cggccaccgc
     4141 gaggaacccg ttgccgcccc tggcggccac cgcgcgttgc cgtgccgagc tcagcgggtc
     4201 gtccgggcgg ggaaacggga tccggtcgac tactaccagg gacagcgacc ggcccggtac
     4261 gtcgacgcct tgccacaacg acagggtgcc gaacagacac gtcgcttcgt cctgagagaa
     4321 ctggtgaacg agcaggccgg ttgcatcgtc gccttggcac aggatgggca tctccacccg
     4381 cgatcgcagc acctcggcgg cttgtttggc ggctcgcatc gaggagaaca ggcctagggc
     4441 gcgcccaccc gccgcggtga ccagttcggc gagctcgtcg atgcaggcag gtgctagccc
     4501 atcacggccg ggcgggggca ggtgcgcggc ggtgtagagg atcccggcgc ggcggtgctc
     4561 gaacggtgag ccggcatcca cacctgtcca tgccggaccg gcgtcatcat cggccggcgg
     4621 tggccgctta gtggcggttc cagtggcggg tgcgctgacc ggtcgctgcc ggggcaggcc
     4681 ccactgtgcc gccagcgcat cgaacgtccc gcccagggtg agggtggccg aggtgagcac
     4741 cactgtgcgc ttcgcgaaca atcgctgctg tagtagttca gcgacacgta acggcgccac
     4801 ccgcagcact cgcccgcgga cggtctcctc cgcgagccac acgacgtcgt gccggtcggc
     4861 cgcactgtcc gggaaggcgt ccagcgtccg ggcggacgcc gagtacacct gctccaacgc
     4921 agtaagcgcg aggcggcgac gggccgcagc gtcgggatct tcgcggcgct cggatcccag
     4981 cgcggtggtg cagcggtgcg ccgcatcacg aacggcggtg agcccggcgg ctaccgccgt
     5041 gcccaggatg tcccaccgct gcaccgacgc gtcgccgagc agcagtgcca gcccgtcacc
     5101 ggcggcggcc agttcgtcgg cgtgctgctg atcgatcagc cggccgcagc ggcgggccgc
     5161 ggtctcgatc atcgacgctg tgagctcctc agtggccgcg ctggtgaccc ggtcgaccag
     5221 gtcgtgggcc tcatcgatca ccacgacgtc atgatcgggg agaacgggcc gatcacccat
     5281 cgcgtcgatt gccaatagcg catggttggt gaccacgacc tcggcacggc cggctcggga
     5341 ccgggcctgt tcggcgaaac agtccattcc gactgggcag cgggacagac ccaggcactc
     5401 tcgggcaccg accgacacct ggcgccaggc ccggtcggtt actccgggca ccagctcgtc
     5461 acggtccccg gtgtcggtgt gcgaagacca ttcgtgcagc cgggcgattt ggcgacccag
     5521 cattgatgtc ggcgaggccg ctgccgctgc gtcaaacaaa tcctcgccct cgtcgaccgg
     5581 cccggtgttc agccggtgca ggcacaggta gttgcgccgg cctttgagga tggcgaagct
     5641 tggtgctgcg ccgaggagcg gttccagggc atcggctagc cggggcaggt cccggtccac
     5701 cagttggcgc tgcaatgcga tggttgcggt gcagaccacc acggtggttt cagcggcgac
     5761 ggcgtgccgg atcgctggca ccaggtacgc caacgacttg ccggtcccgg tgcccgcctg
     5821 caccgcaagg tgctcaccgg tccggatcgc tcgatccacc gcttcggcca tcaagacctg
     5881 gccagcccgc tccgtccccc ccaacgcctg caccgccgtc gcgagcaaca ccccgacgtc
     5941 gggcacggta gtggtggggc cggacacggc agcagacgct acccccagcg tgaccatgct
     6001 tcgtggatcc ctcttgcttg ccgtggtggc ggctacatga aggggtacct gtcgcgtccg
     6061 atcagaggaa cactgtgggg atggcgggtt cgccggggga caggcgcagg ccgtcccagg
     6121 ggagcgtggt cagagccgcg gcgacgcgtt cacgtgcgtc ctggagtgtg ggcagtgagc
     6181 cgacgggttg gcccgcgcac agcatcggta ccgggagcac caggtcgttc tcggtcagag
     6241 agggtcggtg acgacgctgg aacacgacct cctccaacgc ggtgccggtg tctttgtacc
     6301 ggcgcagcgc actcttggcg ccaccccgag tgaccttgga cgcgctgcgt ttggccaccg
     6361 gttgcccatc cacctccacc agcttgtaga ccatccccgc ggtcggcaca ccggaaccgg
     6421 tcaccactga ggtgcctacc ccgtaggagt ccaccggatc ggcacgtagt gccgcgatcg
     6481 agtactcgtc aagatctcca gagacaacga tctgcacgtc cggcgcgccc aatcggtcga
     6541 gttgctcgcg agcctgccgg gccagcaccc cgagatcacc ggagtcgatc cggatcgctc
     6601 gcagccccgg cccggcgacc ttgatggcgg tggcgatgcc ctgggtgatg tcgtaggtgt
     6661 ccaccagcaa cgtggtgtcc gtgcccagcg ccgcgacctg tgcggcgaag gcatccgcct
     6721 cgcgctcgtg cagcaggctg aacgcgtgtg ccgcggtgcc ggtggtgggg atgccgtaac
     6781 gctgcccggc ggcgaggttg gacgttgcgc tgaaacctcc aaggtaagcc gcacgagcgg
     6841 cagcgaccgc cgcctcctcg tgggtgcgcc gcccgcccat ctccaccaac ggccgattat
     6901 ctgcggcgct ggtcatccgg gccgccgcgg tagccactgc gctgtcgtga ttgagcaccg
     6961 agagcaccag cgtttccagg atcaccgctt cggcgaagct gccggtcacc gtcagcaccg
     7021 gggagccggg gaagtacagc tcaccttcgg ggtagccgtc gatatcgccg tgaaaccggt
     7081 agccggccaa ccagtccaag gtgcgtgggt ccagcatgcg gtgcaggaag gccagttgct
     7141 cgacgcgctg gcccggttcc ggttcgacga cgagcaactg gggataccgg cgaggacgcc
     7201 gtagcggtgg ccgcgcagac cgcgcgcgaa cacctcgaac gtgcagcgcc ggaacgctga
     7261 accatcagcc agcgcactcg ccaacatcgt cagctcatac tggtcagtga gaaaagcagt
     7321 gctgcctgcc gtggacggga gcatctgggg agcgtattgg ccggccttgg tgggaacatt
     7381 gagtcatgac cacacccgtc gaactggaac agacccaggt cgaccctgcc gtggacccag
     7441 tggcagacga ggctggtgtt gaggaccggc cctggctgac gatcgtctgg aacgacccgg
     7501 tgaacctgat gtcctacgtc acctacgtgt tccagcagct cttcggattc agccgcgacg
     7561 aggccaccaa gctgatgctc gatgtgcacc acaaaggccg ggccgtggtg accagcggct
     7621 cccgggacaa ggtggagatc gacgtcgcga agctccacgg cgctgggctc tgggcgacca
     7681 tgcagaagga agcgtgaacg gctggcgccg gcgcggcggc gcgctggtaa cgaccttctc
     7741 cgagcgggag gccggcctgc tcagagggct ggtcggccag gttcgtgacc tgctagcggc
     7801 tcgggtcgcc gcgaacccgc aggatgagct ggccgaactc accggcatca tcgccggtcc
     7861 caccaccgct ccggccgacc gcgtgctggc ccggctgctc cccgacttcc accgggagga
     7921 caccgccctg tccggtggcc tgcgcgcgct gcacgaacca gagttgctgg ccaccaaaga
     7981 cggcgcggtc ggggtggtgc tagccacttg cccacctcgt ggcgggcggc tgcggctgtc
     8041 cgagcagcag gcgcaggcct ggctcaccgc gctcaacgat gtccgtctgg cgttggggac
     8101 ggtgctcgag gtcaccgagg acatgcccga cgagctgcca cccgaggacc cgcgcgtccc
     8161 gcacctggcg gtgtaccact ggctgacctg ggtgcaggat tccctcatcc aggcgatggc
     8221 taccacgtag gatgaagttg tgctgaggat cagccgcgac ctcgtggatg cgatggtggc
     8281 acacgcccgg agggaccacc cggatgaggc gtgcggcgtc ctggcgggcc cagcaggttc
     8341 tggccgccca gagcggttca tcgaaatgac gaacgcggag cgttcgccga acttttatcg
     8401 attcgactcg atggaagatc tccggcttga gcgtgacttg gaatcccggg acgaagagcg
     8461 ggtggtgatc tatcactccc ataccgcgac cgaggcctac ccttcacgca ccgacgtcaa
     8521 catcgccggg tatccggagg cgcactatgt gctgatctcc acccgccatc ccgacatgca
     8581 cgagctgcgc tcctaccgga tcgccgatgg cgaggtcacc gaggaacccg tcgaggtcgt
     8641 cgagtcgtac atgttctccc ataccggtgc ggacgacatc cccgacgtgc cctgatcgac
     8701 acgccggctc gtgcggtctc cggaatgccc gggctgggct gtgcgtactg gtagtggtga
     8761 gctgaccgca cccagaggag gatcccgaga atggccgtca ccgtctccgt tcccaccatc
     8821 ctgcgtaccc acaccgaggg cgagaaatcc gtacaagcgt ccggttccac cgtcggtgag
     8881 gtgatcgagg acctggagag ccggcattcg ggcatcaagg gccggctggt gaaggacgga
     8941 tccctgcatc ggttcatcaa cgtctacgtc aacgacgaag acgtccgctt cgtcgggggc
     9001 ctggaggcca aagtccagga tggcgacaac ctgaccatct tgcccgccgt ggccggcggc
     9061 cacgatggtt gtgagtggca aatagcgtta tagcacctaa cgccactcac gagcgcgacc
     9121 gaagggagcg cgatggcccg gtatgactcg ctgctcgatg cgttgggtga cacgccactc
     9181 gtcgggcttc ctcacctgtc accgtcatcg gaggtgcgac tgtgggcgaa gctggaggac
     9241 cgtaacccga ccggctccgt gaaagatcgc ccggcgttgg cgatgatcga ggacgcggag
     9301 cgtaccggcc ggctcactaa gggctgcacg attatggagc cgacctcggg caacaccggc
     9361 atctcgctgg ccatggcggc gaaactcaag ggctaccggc ttgtctgcgt gatgccggag
     9421 aacacttcca tcgagcgacg gcagctgctc gaggcatacg gcgcggagat catcttctcg
     9481 ccggcagcgg ggggctccaa ccaggcagtg gcccgggcca aggagctggc cgcggcgcac
     9541 cccgactggg tcatgctcta ccagtacggc aacccggcca accctgccgc gcattaccgc
     9601 accacgggtc cggagatcct gcgtgaccta ccgacggtga ctcatttcgt cgcgggtctc
     9661 ggtaccaccg gcacgctggt cggagtggga cgctacttgc gcgagcacaa gcccgatgtg
     9721 cagatcatcg cggcggaacc gcgctacggg gagctggttt acggcctgcg caacctcgac
     9781 gaaggattcg tgccggagct ctacgacccg gaagtgctca ccggacggtt ctccgtcggt
     9841 tccttcgatg cgctgcgccg cacccgcgag ctcctggaga tcgagggtat cttcgccggc
     9901 atctccactg gtggaatcct gcacgccgca ctggccgtcg ctgagaaagc ggccggaacc
     9961 ggcgaggcag ccgacattgt gatcgtggtc tgcgacgccg gctggaagta tctctccact
    10021 ggtgcctact ccggcgattt ggaagaggcc gccgcccgcc tagacggcca gctctgggcc
    10081 taacctccgc cccaatcgca ttcagcgggc tggagccggg taaacggaat ctgaataaac
    10141 ccccctgggc ccgctgaatg cgctggatac cgcaggacac aggattctct cagggtgcgc
    10201 gggtagtgtc ggcggacgtg ccggacgtgc gctcggtggg tcggggtcga tcacgggtag
    10261 ttcccgcccg gccaggacag gccgcgatga tcatcgccgc attcaccggt ctcctgtacg
    10321 ccaccgaggc ggtggacacc ctgctcggcg gggcactgga tggcgatggc atccggcccc
    10381 gacagctcga tggtctggac gggatcctgt gggccccgtt gctgcacgac ggttggcagc
    10441 acctggtggc taacacggtt ccggtgctgg tactcgggtt cttggtgctg gccagtggcg
    10501 tcggacaatt ctttgcggtg accgtgacca tctggttggt cggcggtttc gggacgtggc
    10561 tcatcggaag cccccacgtg cacctgggcg cctcgattct ggtcttcggc tggctcgtgt
    10621 tccttctggc gcgggggttc ttcgctcgca gcccggcgca gatcctgctg gcggtggcgc
    10681 tgttcgcggt gtggggcagt gtgttgtggg gggtgttacc cggtggttat gggatctcct
    10741 gggaagggca tctgtctgga gcagtgggcg ggctgattgc cgcacaactg gtcgcccgcg
    10801 ctgaccggcc ccgtgtcgat acaaaaccgt cccgcatcga tcagcctcgg ttgaacggct
    10861 cgtgatcggt ccggatgccc cgatcggggt tttcgattcc ggagtcggtg ggctcaccgt
    10921 cgcgcgcgcc atcgctgatc agctaccccg cgagcggctg cactatgtcg gcgataccgc
    10981 gaacggaccg tacggtccac tgcccatagc ccaaatccgc tcgcatgcgc tggcggtggc
    11041 cgacgaactg gtgaatagtg gagtgaagct gctggtgatc gcctgcaaca cggcatccgc
    11101 ggcctgcctg gtcgacgcaa gagagcgtta ttcgatcccg gtagtggagg tggtgcgtcc
    11161 ggcggtgcgg cgggccgtcg ccgctaccca ctccggccgg gtcggtgtga tcggcaccca
    11221 ggccacgatc cggtcccggg cctaccacga tgccttcgcc gcggctcccc acatcgaggt
    11281 gaccggagtg gcctgtccgc ggttcgtgga ctttgtcgaa cgcgggatga cctcagggcg
    11341 ccagatactc ggcctggcgc agtcttacct cgagccgctg caacgggtca gtgtggacac
    11401 cctcgtgctg gcttgcacac attacccgtt gctcaccggg gtgctgcaga tcgtcatggg
    11461 cgacggggtg accctggtgt ccagtgcgga ggagaccgcc aaggatgtgc tgcgtgtgct
    11521 caccgatgcg gaacggctgc gcaccgaacc cgaggagccc gagcatgtgt tcactgcgac
    11581 tggtgatccg gtgacgttcg cccggctggc ccgccgtttt ctgagaccct cattggtggt
    11641 cacagcggcc gccgggggac cgaggggagc ctgagatgct gctgacagta ctgggttgct
    11701 ccggcagtgt ccccgctccc gagtccccgg cgtctagtta cctggtccgg gctgagggca
    11761 ccagcgtggt gctcgatctg ggcaacgggg ccttcggcgc gctgcagcgc tacatcgacc
    11821 cgttcactct tgacggactg ctgttctccc acctgcatcc ggatcactgc gccgatgtct
    11881 ccgcgctgac ggtctaccgc cgctaccacc cgaacccacc cccttgcgat gtcgtgccgc
    11941 tgtacgggcc gcgggatgcc gccgagcggc tggtggccgc ctacgcgccc aacgccgatg
    12001 agcggaagac gaccgatctg tccgacctct acagcttccg gtcttacggc gaggcggtga
    12061 tgatcgggcc gttcgaggtg cgcgctgtac cggtcgaaca cccttgcgag gcctacgcgc
    12121 tgcggatcga ccatgcgggg agaatcctgg tcttctccgg cgacaccggc ccgtgccggc
    12181 aactcgtcga gttggccacc ggtgccgacg tcctgctcgc cgaggcatcc tggccggatc
    12241 ggccgggtaa cccaccgggc atccacttgt ccggaaggga tgccggtgag gccgccgctg
    12301 ccgccggcgt c
//
LOCUS       DASVXZ010000982         8003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1519468, whole genome shotgun sequence.
ACCESSION   DASVXZ010000982 DASVXZ010000000
VERSION     DASVXZ010000982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 8003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8003
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1519468"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..500)
                     /locus_tag="VF788_20555"
     CDS             complement(<1..500)
                     /locus_tag="VF788_20555"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX8936522.1"
                     /translation="MTVTFDPVRYKDTTRTQWEDAAAAWYAWGPTLEDWLGEATTLML
                     DAAEITTGSTVLDVAAGAGGQSLAAARRVGPSGQVLATDISPAILSHAAAAAAAAGLT
                     NVQTRELDGERLDVDPAAFDAVISRLGLIYFPDQPGALAGQYRALRPGGRISAIVYST
                     ADRNGF"
     gene            504..866
                     /locus_tag="VF788_20560"
     CDS             504..866
                     /locus_tag="VF788_20560"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8936523.1"
                     /translation="MLLADRWMVLTGVVLESVVRPPGRGRQFRSIACSDRLRCKIVSR
                     TFVGHVRALSRLLAAVEQASSGRTRLVLVGGEAGIGKTTLIGEATARSGLLVGCGTCA
                     DAEPTPAFWPGRRPCAAC"
     gene            860..1108
                     /locus_tag="VF788_20565"
     CDS             860..1108
                     /locus_tag="VF788_20565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936524.1"
                     /translation="MLSVLSPTDADALTWPDTAELARLLPKLTAAGSETTNTRLVDGP
                     PDADAARLRLFDAVARFLERVTRHGPTLVELDDLQALS"
     gene            1687..1944
                     /locus_tag="VF788_20570"
     CDS             1687..1944
                     /locus_tag="VF788_20570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936525.1"
                     /translation="MNERNLRAERLRHFALAVADPTDTKLSAVFPELPRDTGHFSVRY
                     FPHVLRGLRIEIPAYVQDVLTGQRPPSSVAEKVGGIVVVRC"
     gene            complement(2022..2891)
                     /locus_tag="VF788_20575"
     CDS             complement(2022..2891)
                     /locus_tag="VF788_20575"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX8936526.1"
                     /translation="MDLEIRHLRVFLTIARERSISRAARQLHLAQPAVSRTLRQLERW
                     LHAELMTRSSEGIQLTSVGEVFYGKATAAVEAFDAAVGTPPQQPRPLRVGHAWAAFSH
                     YTTRVLRTWRAAYPQVPLELRRIDDPFAGLTSRRTDAAVLRDRLPPGPDFEAQALYEE
                     PRVVVLPPDDPLVSWEQLRLADVTARCVALNIVSGTTRLDLWPTGQRPGSTIEVSNVD
                     DWYSAIAAGDAIGITPASTAEIYPHPDVRYVPLVDAPPVWIYLAWPAASAHPAIATLL
                     SIIHSIIQPERGT"
     gene            3115..4020
                     /locus_tag="VF788_20580"
     CDS             3115..4020
                     /locus_tag="VF788_20580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016333660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diiron oxygenase"
                     /protein_id="HEX8936527.1"
                     /translation="MATALINRSRRLRDILERLSAQSVEDYYNPYKTFEWPESLPPGI
                     WWMSPELMTTAGHELETELNIEQRQRLSRAESINFYSLNVHGIRELLIEVTRRIHTRE
                     FAAPSEYFHHFIGEENEHMWFFAEFCLRYGGKIYTQPRGGAATIPPSRAESLLVFARI
                     LIFEELVDHYNMTMAADARLHDTVRAVNRIHHQDESRHIAFGRELVKVLFGEFKTDAT
                     QTELDEVEDYLKRYMNFSFESLFNPQVYKDAGLPRPLEIRTRLLSAPERTGKEKYVFR
                     KTLPYLQRVGIISNTDLDSARSGSV"
     gene            4020..4859
                     /locus_tag="VF788_20585"
     CDS             4020..4859
                     /locus_tag="VF788_20585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016333661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936528.1"
                     /translation="MNGVPTRYGGGIAILGAAHTAVLKTLDNLVVRWAVNAGAEEILP
                     PPIHAVADLVKFDVYTNFPHLSLVAGPLRTDPPTKPHGGQFTSHQILPAGLGLPIATC
                     FGVYLFLEDRRVTDDLLITLSNRCFRSEDYFDGLRRLLTFQMREIVAVGSYEHTQRHL
                     ERFTTKIENLAERLSLNMVKKAASDPFFQKESPRALMQQLSAVKNEFQVHGLAISSVN
                     THRNYFGERCNITLKNGEPAFTSCVAFGLERWLAVLLDRHGGNAEAALEAIRSVSDHL
                     IST"
     gene            4856..5278
                     /locus_tag="VF788_20590"
     CDS             4856..5278
                     /locus_tag="VF788_20590"
                     /inference="COORDINATES: protein motif:HMM:TIGR00556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HEX8936529.1"
                     /translation="MIAVRVGIDIVPLARVTAILGADPEVLQRHLVAPEIDDAYRDGK
                     IDKACVAGKLAGKEAVFKLFRRPGAVLPWRAIHISTSAAGWPIAALSGSAAAWATEVA
                     LTNIDLSIAHDSSYAIAAATGYIDATPRKVHQKLKETP"
     gene            5275..5517
                     /locus_tag="VF788_20595"
     CDS             5275..5517
                     /locus_tag="VF788_20595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016333663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEX8936530.1"
                     /translation="MTTSTETRLGNVIQWILAKNPARSSIDPSEDLIVNRLIDSLSFV
                     EFVFLIEQESGASIDVENIDLEQFRTLNAIERAFFG"
     gene            5535..5996
                     /locus_tag="VF788_20600"
     CDS             5535..5996
                     /locus_tag="VF788_20600"
                     /inference="COORDINATES: protein motif:HMM:NF013722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HEX8936531.1"
                     /translation="MRYAEDYPKGERCYLGEHKVTADEIIQFGRTYDPQPYHVDEELG
                     RSSIFGGLIASGWNTCAIWMKLYVTTLLPDSAVEGSPGVDNIRFLLPVRPGDVLHGTA
                     EITGVIPSFSDPRVLILQNKGELIRADGETVLTLTLSSRFRKRGSGVETVT"
     gene            6030..6866
                     /locus_tag="VF788_20605"
     CDS             6030..6866
                     /locus_tag="VF788_20605"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016333664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX8936532.1"
                     /translation="MTMEAVSYTAQWTAAARAVETERGDERLVHDEYARSLAEPHGFE
                     LLDKYGGAGLKEFVAIRTKYLDDSITTILDTTDIKQVVLVAAGMDTRSFRLKWPDGVV
                     VYEVDHAALHDEKQQRLDRLGAVPAVERRPTRADLASDWLPALQQAGFDPAAPALWVP
                     EAVFFFLTEDQAAQLLETLAQASAPGSWLATDILSKRLLRSPSTWLFLAALRKDGIPW
                     LFGTDHPAWFLAQHGWELRELHEPGEPGAGEGRWPYQTHPRSVRGVSRNWLIRAEVLP
                     PG"
     gene            complement(6863..7480)
                     /locus_tag="VF788_20610"
     CDS             complement(6863..7480)
                     /locus_tag="VF788_20610"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX8936533.1"
                     /translation="MPVRPGEAIDPETTRERILEVSEALFYRQGICAVGISEVAAAAG
                     ASKMSIYKNFGSKDGLVEATLNYRSERVRRWLAEGIARVPPGPSRILVIFDMLVGWFQ
                     EPGFRGCAIVSAAAENRVSGAAPTRLARAHLQFYRELLTRCLNEAGAADPEGVARQLL
                     ILIEGATVVSAIDSNPSAGMDARAVAEAVLASALGSTRPLPTAEP"
     gene            7561..>8003
                     /locus_tag="VF788_20615"
     CDS             7561..>8003
                     /locus_tag="VF788_20615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020496031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX8936534.1"
                     /translation="MTSSTAVPVRRLWVAVLCGYLALGATLQALPTFVPLRFGGGALA
                     SGTAVGVAFFTTALTRPFAGRFADAGRARPVVMLGGVLGALGGLGHLWAPSFSVLIVA
                     RLVMGAGEAALFSGALPWVLANAPTTRRGRVAGWFGLSMWGGLAAG"
BASE COUNT         1506 a         2524 c         2437 g         1536 t
ORIGIN      
        1 aaaaagccgt tgcggtccgc cgtcgaataa acgatcgcgg agatccggcc gccgggacgc
       61 agcgcgcggt actggccggc cagtgcaccg ggctggtcgg ggaagtagat cagaccgagg
      121 cgggagatca ccgcgtcgaa cgccgccggg tcgacgtcga gccgctcgcc gtcgagttcc
      181 cgggtctgca cgttggtcag gccggccgcg gcggccgcgg cggcggcgtg gctcaggatc
      241 gccggcgaga tatcagtggc cagcacctga cccgaggggc cgactcggcg ggccgcggcc
      301 agcgactgcc cgccggcgcc ggcggcgacg tcgagcacgg tgcttccggt agtgatttcg
      361 gccgcatcca gcatcagcgt tgtcgcctca ccgagccagt cctccagcgt tggaccccag
      421 gcgtaccagg cagcggccgc gtcctcccac tgggtgcgag tggtgtcctt gtagcgaacg
      481 ggatcaaagg tgacggtcat gacgtgctcc ttgcggatcg gtggatggtg ctgactggtg
      541 tggtgctaga aagcgtcgtg cggccgccag gacgcggcag gcagttccgc tcgatcgcgt
      601 gcagcgaccg gctgcggtgc aaaatcgtct ccaggacctt cgtaggccac gttcgcgcgt
      661 tgtcccgtct gctcgcggct gtggagcagg cgtcgagcgg gcgcacgcgt cttgtgctgg
      721 tcggcggcga ggccggtatc ggaaagacca cgctgattgg tgaagcgacc gcgcgcagcg
      781 ggctactggt cggctgcgga acctgcgccg acgctgaacc cacaccggcg ttctggcctg
      841 gacgacggcc ctgtgcggct tgctgagcgt ccttagccca accgatgccg acgccctcac
      901 ctggcctgac acggccgagc tggcccggct gcttcccaag ctgaccgccg cgggatcgga
      961 gaccaccaac accaggctgg tggacggccc acccgacgca gacgccgcgc ggttgcgact
     1021 gttcgacgct gtcgcccggt tcctggaacg ggtaacccgg cacgggccaa cgctcgtgga
     1081 gcttgatgac ctgcaggccc tttcgtgatc tggcactaga ccgcttttac gtcggcgccg
     1141 ctcgtcacga gcgggtcgcg ttcagtcaat tgcgtttgtt gccacggcag gatctcccgg
     1201 accagtacgg caggatcgga tggatcaccc cgatagattt gcgctagccg cgcccgtcgc
     1261 ctgccttcgt agatccagtc tagttttctc tgccatttct ccctcagcac cgtgtgcctc
     1321 ccttttgtgt cagtactcat tcgctatcgc gccgacgtgt tggggtagag cagccataac
     1381 tcatgactgc tctgacgtcg gtcatggcct acgaaagtag gaggcaacca tgacccagtt
     1441 agatacagac gcataggtca gcaccgggcg ccggctgcac cggacgctgt cttgctgacc
     1501 ggatgacacc gcccccgcga gaacagcacc ggctatcacc aggacaacag cgccatctcc
     1561 agtcgcggcc aacccgcgct gcgacgagca gcctggcgca ccgtgtgggc tgcgctgccc
     1621 acactccgtc ctcgccacgg gagttcaggg gcccgtggga gtggtccacc ggttccactc
     1681 atgtgcatga acgagcggaa cctgcgcgcg gaacgactcc gacacttcgc tctggccgtg
     1741 gcggatccca ccgataccaa gttgtcggcg gtttttcctg agctgccccg cgacaccggc
     1801 cacttctccg tccggtactt tccgcatgtg ctgcgcggcc tccgcatcga gatcccggcg
     1861 tatgtgcagg acgtgctgac cgggcagcgg cccccgagtt cggttgccga gaaggtaggc
     1921 ggcattgtgg tcgtccgctg ctgagcgtgc ggtcccggcg gagcgcccaa ggcctggaag
     1981 ctctccgcta accgccggaa ggaacatgat aagggtagtt atcatgttcc tcgctccggt
     2041 tggataattg agtgaatgat gctcagtaga gtcgcgatgg ccgggtgggc gctagcggct
     2101 ggccacgcaa gatagatcca cacaggcggt gcatcgacca gcgggacata gcggacgtcg
     2161 gggtgcggat agatctcggc ggtggaggcc ggcgtgatgc cgatcgcgtc accggcggca
     2221 atagcgctat accaatcatc gacgttgctg acctcaatcg tggagccagg cctctgacct
     2281 gtgggccaca ggtcgagccg ggtcgttcct gaaacgatat tgagggcaac gcagcgggcg
     2341 gtcacgtcgg ccagtcgcag ctgctcccaa ctcaccaacg ggtcgtcggg tggcaagacg
     2401 actacgcgag gttcctcgta tagtgcctgg gcctcgaagt cgggaccagg tggtagacgg
     2461 tcgcgtagta ccgctgcgtc agttcgccgg gaggtgagtc cggcgaaggg gtcgtcgatc
     2521 ctgcgcaact cgagcggaac ctgggggtag gcggcacgcc acgtgcgaag caccctggtg
     2581 gtgtagtgac tgaacgcggc ccaggcgtgc ccgacgcgta gcggtcgggg ctgctggggc
     2641 ggcgtaccta ccgcggcatc gaaggcttcc accgccgcgg tcgccttacc gtagaacacc
     2701 tcccccactg aagtgagctg aatcccctcc gatgagcggg tcatcaactc ggcgtgcaac
     2761 cagcgttcta gctgccgcag cgtgcgcgat accgctggct gagccaggtg cagctggcgt
     2821 gctgcccggc taatgctgcg ctcacgcgcg atcgtgagaa agacccgtag atgccggatc
     2881 tcgagatcca tgcttaccaa gcataccccg tacctgataa gtatttctcc ttaagggtga
     2941 acaagaggtg gcagcacgta aactagccga tttttgggta ccgattgtta ccaacttgct
     3001 ccatctgtgt ggtggcccgt cctgtcaagg ttattcgctt gaccgtggag tgagcgcatc
     3061 cctactgtcg gcggtgatat tccgtgacgc attttcccgg agccaggggg gcccatggct
     3121 actgcgttga tcaaccgaag ccgacggttg cgcgacatcc tcgagcgcct cagcgcgcaa
     3181 tccgttgaag attattacaa cccatacaag acgttcgagt ggccagaatc actgccaccc
     3241 ggtatttggt ggatgagccc agagcttatg actacggcgg gccacgagtt ggagacggag
     3301 ctcaatatcg agcagcgcca gcggttgtct cgcgccgaga gcatcaactt ctatagcctg
     3361 aacgttcacg ggatccgtga gctactcatt gaggtgactc ggcgtatcca cacgcgcgaa
     3421 tttgcggcac cgtcggagta cttccatcat ttcatcggcg aggagaacga acacatgtgg
     3481 ttcttcgccg agttctgcct acgctacggc ggcaagatat atacccaacc acgcggtgga
     3541 gccgccacca tcccgcctag ccgggccgag agtctgctcg tgttcgcacg gatcctgatc
     3601 ttcgaagagc tggtcgatca ttacaacatg acgatggccg ccgacgcccg gctacacgac
     3661 actgttcggg cagttaatcg gattcaccac caggatgagt ctcggcacat cgcctttggg
     3721 cgagaattgg tgaaggtgct gtttggcgaa ttcaagaccg acgccactca aacggaactc
     3781 gacgaggtgg aagactacct caagcgctac atgaacttca gctttgaatc acttttcaac
     3841 ccgcaggtct acaaggacgc aggtctaccg cgacccctag aaatcaggac ccggttgctc
     3901 tccgctccgg aacgcacggg caaggagaag tacgtcttcc gcaaaacact gccctaccta
     3961 caaagggtcg gcatcatatc taatacagat ctggattctg cacgctcggg gagtgtttga
     4021 tgaacggagt accaacgcgc tacggcggag ggatcgccat cctgggcgcc gcgcatactg
     4081 cggtgcttaa gacgctcgac aatctcgtgg tgagatgggc agtcaacgct ggcgcagagg
     4141 agattttgcc tccccctatc catgcggtcg ccgacctggt caagttcgac gtctacacca
     4201 acttccctca cctgtccctg gttgcaggcc ctctacgaac cgatccaccc accaagcccc
     4261 atggagggca gttcacctcc catcagatac tgcccgcagg gctcggcttg cccatcgcca
     4321 cgtgcttcgg tgtctacctg ttcctcgagg accgccgagt caccgatgat ctcctgatca
     4381 ccctgtcaaa taggtgcttc cgcagtgaag attacttcga cggtctgcgg cgactcctca
     4441 cctttcaaat gcgtgagatc gtggcggtcg gcagctacga gcacacccag cggcacctcg
     4501 aacggttcac aaccaagatc gagaacctcg ctgaacgtct gtcgctaaac atggtcaaaa
     4561 aggcggcatc cgaccccttt ttccagaagg agagtccccg agctttgatg caacagctca
     4621 gtgctgtgaa gaacgaattc caggtccatg ggctggcgat ctcatcggta aacacccacc
     4681 gcaactactt tggtgagagg tgcaacatca cgctgaaaaa cggcgagccg gcttttacta
     4741 gctgcgtggc ctttggcctg gagcgttggc tcgcggtcct gctcgatcgc cacggcggca
     4801 atgcggaggc cgccctggag gcgatccgct cggtatccga ccacctcata tcgacatgat
     4861 cgccgtccgt gtcgggatcg acatcgttcc tcttgcacgg gtcacagcga tcctcggggc
     4921 cgatcctgaa gtgctgcagc gccacctcgt cgcaccggaa attgacgatg cctatcgaga
     4981 cggcaagatc gataaagctt gtgtcgcagg gaagctcgcc gggaaggaag ccgtgttcaa
     5041 gctattccgt cgaccaggag cagttctgcc gtggcgagcg atacacatca gcactagtgc
     5101 cgctggatgg ccaatagccg cgttgtcggg ctcagccgcg gcgtgggcca ccgaagtagc
     5161 tctgaccaac atcgatctca gcattgcgca cgacagttcc tatgccatcg ccgcggcgac
     5221 tggatacatc gatgcgaccc ccagaaaagt gcaccaaaaa ctcaaggaga cgccatgacc
     5281 acttcgacgg agacccgcct cggcaacgtc atacagtgga tcctcgccaa gaacccggcg
     5341 cgatcatcga tcgatccctc cgaagatcta atcgtcaatc ggctaatcga ctcgctgtcg
     5401 ttcgtggagt tcgtgttcct tattgagcag gaaagcggag cttcgatcga cgtcgagaac
     5461 attgaccttg agcaattccg gacactcaac gccatcgaac gcgcattttt tggctgactg
     5521 aaaggagcct ccctatgcgg tacgccgaag actaccccaa aggcgaacgt tgctatctag
     5581 gggaacataa ggtcaccgct gatgagatca tccagttcgg acgcacatac gacccgcaac
     5641 cgtatcacgt cgatgaagaa ctcgggcgtt cctcgatttt cggtggcctc attgctagcg
     5701 gatggaacac atgcgcaatc tggatgaagc tttacgtgac tacattgctt ccggattccg
     5761 cggtggaggg ctcgccgggt gtcgacaaca ttcgttttct gctgcctgtc cggccgggcg
     5821 atgtcctgca tggaaccgca gaaatcacag gcgtcattcc ctcctttagc gacccgagag
     5881 ttctgatcct ccaaaacaaa ggagagttga tacgtgccga tggtgagact gtgttgaccc
     5941 tgacacttag cagcagattc cgcaagcgcg gtagcggcgt agagactgtt acttaatccg
     6001 atatacttag agaactggag taactcatca tgacgatgga agcggtttcc tacacggcgc
     6061 agtggaccgc cgctgctcgg gcagtggaaa ccgagcgcgg cgatgagcgc ctggtccacg
     6121 acgagtacgc gcgttccctt gctgaaccac acgggttcga gctgctagat aagtacggcg
     6181 gcgctggcct caaggaattc gtcgcgatcc gcaccaaata tctcgatgac tcgatcacca
     6241 ccatcctcga cactactgac atcaagcaag tggtgctcgt ggccgcgggg atggacacgc
     6301 gaagtttccg gctcaagtgg cccgacggcg tcgtagtcta cgaggttgat cacgctgccc
     6361 tgcacgatga gaagcagcag cggttggacc ggcttggggc cgtgcccgca gtcgagcgca
     6421 ggccgacccg tgccgatctg gccagtgact ggctgccggc actccagcag gccggcttcg
     6481 atcccgcagc cccggcattg tgggtgcccg aagcagtgtt ctttttcctc accgaggacc
     6541 aagcggccca actgctggag actctcgctc aggcctcggc accgggaagc tggctcgcca
     6601 ccgacatcct cagcaaacga ctcctgcgca gcccgtcgac ctggctcttc ctagctgcct
     6661 tacgcaagga tggcatcccc tggctcttcg gcaccgacca cccggcatgg ttccttgccc
     6721 agcacgggtg ggagttgcgc gaactgcacg aacccggtga accgggtgca ggcgaaggcc
     6781 gttggcctta tcagactcac cccagatctg tgcgaggcgt ctcgcggaac tggctgatca
     6841 gagccgaagt attgccgcca ggttaaggct cggcggtagg taacggtcgc gttgacccga
     6901 gtgccgaagc gagtactgcc tcggccaccg cacgtgcgtc catgcctgcc gatgggttac
     6961 tgtcgatggc gctgacgacc gtggcaccct cgatgaggat cagcagttgc cgtgcgacgc
     7021 cctcgggatc ggccgccccc gcctcgttca ggcagcgcgt tagcagttct cgatagaatt
     7081 gcaggtgcgc acgcgccagt cgggtcgggg ctgcgccgga cacgcggttc tccgcggcgg
     7141 cgctgactat cgcgcatccg cgaaagccgg gctcctggaa ccaaccaaca agcatgtcaa
     7201 agatcaccag aatccggctg ggtcccggcg gaactcgcgc gatcccctcg gccagccacc
     7261 gacgtacgcg ctcactgcga tagttcagcg tggcctcgac taggccgtcc ttcgacccga
     7321 agtttttata aatggacatc ttggatgccc cagcggcggc agcgacctct gaaataccca
     7381 ccgcgcagat gccttgccga tagaacaggg cttcagaaac ctcgaggatg cgctccctgg
     7441 tcgtctctgg gtcaatcgcc tcacccggcc gtacgggcac cgaatttcac ctcctaacac
     7501 tgcgtgttca agccttcaaa ccacttgtca tagatagtaa cgttcgttac cttctttcct
     7561 gtgacctcct ccaccgccgt ccccgtccgg cgcctctggg tcgccgtgct gtgcggctat
     7621 ctcgcccttg gggcgactct gcaagcgctg ccgacgttcg tgccccttcg cttcggtggc
     7681 ggagcactgg ccagtggcac cgccgtcggg gtggccttct tcaccaccgc actcacccgt
     7741 ccgttcgccg gtcgcttcgc cgacgcaggc cgcgcacgac ctgtggtgat gctcggtggc
     7801 gtcctcggag ccctcggcgg tctcggccat ctctgggccc ccagtttctc cgttttgatc
     7861 gtagctcgtc ttgtgatggg cgccggcgaa gcggcgctgt tctccggtgc cctgccctgg
     7921 gtgctcgcca atgcgccgac cacccgacga gggcgggtag cgggatggtt cgggttgtcg
     7981 atgtggggcg gcttggccgc agg
//
LOCUS       DASVXZ010000983         4196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1519651, whole genome shotgun sequence.
ACCESSION   DASVXZ010000983 DASVXZ010000000
VERSION     DASVXZ010000983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4196
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1519651"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VF788_20620"
     CDS             complement(<1..195)
                     /locus_tag="VF788_20620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936535.1"
                     /translation="MGTALWPAIPTIIPPNTAVVCADVTAGTGVLGAQTDHVGVAGVA
                     IPIVVNTIAHVAGLLGCGGCG"
     gene            255..986
                     /locus_tag="VF788_20625"
     CDS             255..986
                     /locus_tag="VF788_20625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX8936536.1"
                     /translation="MKFAVIGGTGLIGSRVVENLNAAGHQAIPHSLSTGVDIITGQGL
                     EAAVAGADVVINLTNSPTFDDASLAFFQTSMDNLLAPSEKAGVGHFVILSIVGVDQVP
                     DLDYYRAKMLQENILKAGPIPYSIVRATQFMEFMDSTLSMTTDGDTVRLPRTPIQPIA
                     AADVSNIVAEVAAGSPLNGVINIAGPDVYPLDELGRLTLTAKSDGRSVVTDDTAGMFA
                     AVHGDVLTAPHDARIAPTHYTDWLS"
     gene            complement(1146..2447)
                     /locus_tag="VF788_20630"
     CDS             complement(1146..2447)
                     /locus_tag="VF788_20630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8936537.1"
                     /translation="MAKPPNQRCVVIVGAGFAGFHAARELSRLVGATTEIVVINSTDY
                     FLYLPLMPQVAGGLVEPRHVCVSLSQRLRRAGFVLGTVDHVDLGQKVVSWASPEGGSG
                     QVGYDRLILTAGSVNKLLPIPGVAQYAHGFRSIAEAIYLRDHLTRQLELAAIAADPAE
                     CAARCTFVVVGAGYTGTEVTAQGQLLTTRLVKNMPALAGQQMRWMLLDTAPRLLPELD
                     EHLSKTASRVLRRRGVEVRTGQSVATALPGQVLLSTGEKVPTCSLIWCVGVRADPLVN
                     GLNLETHRGRLVVDEYLAVPGAPDIYACGDCAAVPDLTRPGQVCGMTAQHAQRQGKQV
                     ARNVAASLGVGKGRPYQHHDEGFLVDLGGLAAAANPLNIPLSGPAANAVTRAYHLAAM
                     PGNRMRVLTDWMLNVVTPPETTSFGLISAESVPLDVDQPRA"
     gene            2767..3042
                     /locus_tag="VF788_20635"
     CDS             2767..3042
                     /locus_tag="VF788_20635"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX8936538.1"
                     /translation="MQSLLDDRTARARVRDETLRLFGERGPDAVTVRDIAAAAGVSPA
                     LVVRHYGSKEVCVRRSTSTWRGCSRRCWPRSSSRPMPSPSTSKRCRS"
     gene            3030..3428
                     /locus_tag="VF788_20640"
     CDS             3030..3428
                     /locus_tag="VF788_20640"
                     /inference="COORDINATES: protein motif:HMM:NF036526.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936539.1"
                     /translation="MPILAEMVAANLSAGSAIPAYLGRMLVTGGPVGSALFRRLHEVS
                     RDALARMTAAGMASASADPEVRAAFLLVSDLAVVILRDRLREALDVDPLSADGMRRWG
                     AEVLSVYRDGIGARSTGAERRAVVERDESR"
     gene            3432..4097
                     /locus_tag="VF788_20645"
     CDS             3432..4097
                     /locus_tag="VF788_20645"
                     /inference="COORDINATES: protein motif:HMM:TIGR00026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HEX8936540.1"
                     /translation="MSNVVTLPVESTAIGRVGARVLANRALMRAPIWLYRARLGFLFG
                     SRTLMLEHIGRKSGAWRYVVLEVIGHPTPDVYIVASGFGVRAQWFRNLMANPHVRVSI
                     AGDGPREATARQLSTAEADAALSDYVRRHPRAWAKFKNVLENTLGSAISQHDTELPMV
                     ELRLNRQPLRAVISSPRRSLAGSHQQLTSQCFPTANPLERCCRSERLTNTACRRSEPC
                     SSS"
BASE COUNT          720 a         1410 c         1353 g          713 t
ORIGIN      
        1 accgcaacca ccacacccta aaagcccggc tacgtgtgcg atcgtgttca ccacgatcgg
       61 gatcgctaca ccagccacgc cgacgtggtc ggtctgcgcc cctagtaccc cggtaccggc
      121 ggtgacgtcc gcgcagacca ccgcggtatt gggcggaata atggtcggaa tcgcgggcca
      181 gagcgccgtc cccatagcaa tcaggcctca taaggtgtat atgcggcacc aatcatcgaa
      241 agaaggcgca tgccatgaag ttcgcagtca tcggtggaac cgggctgatc gggtcacggg
      301 tcgtggagaa cctcaacgcg gccggccacc aagccatacc gcactccctg tccaccggcg
      361 tagacatcat cactggccag gggctggagg cggccgtggc gggcgccgac gtcgtcatca
      421 acctgacgaa ttcccccacc ttcgacgacg cctcgctcgc cttcttccag acttcgatgg
      481 acaaccttct tgccccgagc gagaaggccg gggtcgggca cttcgtcatc ctctcgatcg
      541 tcggcgtgga ccaagtgcct gatctggatt actaccgggc gaagatgctt caggaaaaca
      601 tcctcaaggc cgggcccatc ccctattcca tcgtccgcgc cacgcagttc atggagttca
      661 tggactcgac cctgtccatg accaccgacg gcgacaccgt ccgcctgcca cgcacgccaa
      721 tccagccgat cgccgccgcg gatgtctcca acattgtcgc cgaagtcgcc gcaggcagcc
      781 cactcaacgg cgtcatcaac atcgcaggcc ccgacgtcta ccccctcgac gaactcggcc
      841 ggctcaccct gaccgccaag agcgacgggc gctctgtcgt caccgacgac accgccggca
      901 tgttcgccgc cgtccacggc gacgtcctca ccgccccaca cgatgcccgc atagccccca
      961 cccactacac cgactggctc tcctgaacca gccctccctt cagtcccgct gtctggtccg
     1021 aggtgtgttt ggttaggttg ccggcatggg caagctgctg ctcggcgacc accgcagcgt
     1081 cgggtggggt cagtcatcag ctgctggtga gcgccgggga ttactggggt gcgggcgcgg
     1141 tcgggtcagg ctcgtggttg gtccacgtcg agtggcacgg attcggcgct gatcagccca
     1201 aacgatgttg tttccggggg tgtgacgacg tttagcatcc aatcggtcag cacccgcatc
     1261 cggttgccgg gcatggccgc cagatggtag gccctggtga cggcgttggc cgctggcccg
     1321 gacagcggga tgttcagcgg gttggcggcc gcggctagtc cgcccaggtc caccaggaaa
     1381 ccctcgtcgt ggtgctggta ggggcggccc ttgccgacgc ccagggaggc ggcgacattc
     1441 ctggcgacct gtttgccctg gcgctgggcg tgctgggcgg tcatgccgca gacctgccct
     1501 gggcgggtca ggtcaggtac cgccgcacag tccccgcagg cgtagatgtc cggggcgccg
     1561 ggcacagcca ggtactcgtc gaccaccagc cgtccccggt gggtctccag gttcaggcca
     1621 ttgaccagcg gatcggcgcg gactccgacg caccagatca gcgagcaggt cggcaccttc
     1681 tcaccggtag acagcagaac ctggccaggc agggcggtgg cgaccgactg gccggtgcgt
     1741 acctcgacgc cccgccgacg cagcactcgg ctggcggtct tggacagatg ctcatcgagc
     1801 tcgggcagca gccgcggcgc agtgtccagc agcatccagc gcatctgctg cccagccagg
     1861 gcgggcatgt tcttgaccaa ccgggtggtc agcagctgac cctgcgcggt cacctcggta
     1921 ccggtatagc ccgcgccgac cacgacgaag gtacagcgcg ccgcacattc agcagggtcg
     1981 gcggcgatgg cggccagctc gagctgacgg gtgaggtgat cgcgcaggta gatcgcctcg
     2041 gcgatgctgc gaaacccgtg cgcgtactgg gccactcccg gaatcggcag cagcttgttc
     2101 acgctgcccg cggtcaggat gagccggtca tacccgacct gacccgaccc accctccggg
     2161 ctggcccagc tgaccacctt ctgcccaagg tcgacatggt cgacggtgcc cagcacaaac
     2221 ccggccctgc gcagccgctg cgacagcgag acacagacgt gccgcggctc caccagcccg
     2281 cctgccacct gcggcatcag cggcaggtac aggaaataat ccgtcgagtt gatcaccacg
     2341 atctcggtcg tagcacccac cagccgcgac agctcccgcg cggcgtggaa gccagcgaaa
     2401 cccgccccca cgatcaccac acagcgctgg tttggcggct tggccatcga ggtcactact
     2461 taccagatcg ttagggattg gctggtccga ggtagggaaa ctcggccagc aggttgtgcg
     2521 gctgcaaccc gtcggggtga gcgtgccacg gctcagccag gcaaaccggg cgctggagac
     2581 gtcgtcggct gggtatggcc gttgctcttc cgcgacccgc tcggtggtgt gttcggcggt
     2641 ccacttctcc cgatacgccg gaatcgattg tcgcgatgaa cccggccaca ccgacaatcc
     2701 gggccgacgc gatccacgcc tgcttgccag cgcgatgaac aaaaacaatt gtttagcatt
     2761 gtaaacgtgc agtcactgct cgacgatcgt acggcacggg cgagggttcg tgacgagacg
     2821 ctgcgactgt tcggcgagcg cggtcctgac gccgtcaccg ttcgcgacat cgctgcggcg
     2881 gctggtgttt cgccggctct ggttgtgcgc cactacgggt ccaaggaggt ctgcgtgagg
     2941 cggtcgacga gcacgtggcg cgggtgttcg aggcgatgct ggccgagatc atcgagccgg
     3001 ccaatgccga gcccttcgac tagcaaacgg tgccgatcct agccgagatg gtggcggcga
     3061 acctttcagc cggttctgcg atccctgcgt atctcggtcg gatgctggtg acgggcgggc
     3121 cggtgggctc ggcgctgttc cgaaggctgc atgaggtcag tcgggacgca cttgcccgca
     3181 tgacggccgc cggtatggcc agtgcgagtg cggatccgga agtgcgcgcg gcatttctgc
     3241 tcgtcagcga ccttgcggta gtgatcctac gtgaccggtt gcgcgaggca ctcgacgtcg
     3301 atccgctctc ggccgatggt atgcggcgtt ggggcgcgga ggtcctgtcg gtctaccgcg
     3361 acgggatagg ggcacgctcg actggggctg agcggcgtgc cgtcgtggag cgagatgaat
     3421 cgaggtaagt catgtccaac gtagtcacgc tgcccgtcga gtcgactgcg atcggcagag
     3481 tcggagctcg ggtgctcgcg aatcgggcgc tgatgcgtgc gccgatctgg ctgtaccggg
     3541 cccggttggg attcctgttt ggctcgcgga cgctgatgct tgagcacatc ggccggaagt
     3601 ctggcgcctg gcgttacgtg gtgcttgagg ttatcggcca cccgacgcca gacgtctaca
     3661 tcgtcgcttc gggtttcggc gtccgggccc agtggttccg caacctgatg gccaacccgc
     3721 acgtccgcgt atccatcgcc ggcgatgggc cacgcgaggc cacggcccgc cagctgtcca
     3781 cggccgaggc cgacgcggcc ctgtcggact atgtgcgccg gcacccccgc gcatgggcga
     3841 agttcaagaa cgtcctagag aacacactcg gtagtgcgat cagccaacat gacaccgagt
     3901 tgcccatggt cgaactgcgc ctcaaccggc aacccctcag agcggtgatt tccagcccgc
     3961 ggagatcgct ggctggctct caccaacagc taacgagcca atgcttccca acagccaacc
     4021 cactcgaacg ctgttgcaga agcgaacggc taacgaacac tgcctgccgc cgttcagaac
     4081 cctgttcctc aagttaatca tctgtccgat acggatcgtg tgcagtacgg ggcgcaaaaa
     4141 gcgcgctaca ccgcgcgagc ggccggttgc gccactggtc cggtaccggt gccccg
//
LOCUS       DASVXZ010000984         1750 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1428492, whole genome shotgun sequence.
ACCESSION   DASVXZ010000984 DASVXZ010000000
VERSION     DASVXZ010000984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1428492"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1493)
                     /locus_tag="VF788_20650"
     CDS             complement(<1..1493)
                     /locus_tag="VF788_20650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936541.1"
                     /translation="MVLFFGLLFWVGGASGGAPPIASPTLTTQASPDTAAGGEITDTA
                     TLAGGIAPTGTITFTLYGPDDATCGGAPIHTSNHTVIANDDYVSDPFFPTVPGLYRWV
                     ATYSGDTFNNGVTSPCNAANESVTITPGPPNKVVFTQQPSDTVAGSSITPAVTVEIHD
                     EYGNLTSSTADVTVVLENNPSGGTLSGTTTVSAVAGTATFSDLSIDKTGTGYTLTASS
                     PALTSHTSSTFNISPAADDHVVFVQQPSDTQAGSSITPEVTVEIRDQFGNLTSSTASV
                     LVAIGSNPSGGTLSGTTTVTAVNGTATFNDLSIDKAGTGYTLTADSPALTGDNSNSFT
                     ITPAADDHLVFVQEPTDATAGSSIAPAITVEIRDQFDNVTTSTASVTMAIDTNPGGGT
                     LSGTTTVSAVNGTATFNDLSIDKAGSGYTLMATSPGLTSDTSSTFNITPAAEDHLVFV
                     QEPTNTEAGSTISPAVTVEVRDQFENLTSSSASVTVAIGSNPGGGTL"
BASE COUNT          331 a          495 c          557 g          367 t
ORIGIN      
        1 ctcaacgttc cgccaccggg attgctccca atggccaccg tgacgctggc actactggag
       61 gtcaggttct cgaattgatc tcgcacctcc accgtaacgg ccggagagat ggtgctgccg
      121 gcctcggtgt tcgtcggctc ctggacgaaa acaaggtgat cttccgccgc gggcgtgatg
      181 ttgaacgtag aagaggtgtc gctcgtcagg ccaggcgaag tcgccatgag cgtgtagccg
      241 gagccggcct tgtcgattga gagatcgtta aaggtcgctg tgccattcac tgcgctcacg
      301 gtcgtcgtgc cgctcaacgt cccgccgccc ggatttgtgt cgatcgccat cgtgacactc
      361 gcggtactcg tggtcacatt gtcgaattga tcgcggatct ccaccgttat cgcgggcgcg
      421 atgctgcttc ccgcggtcgc atcagtcggc tcctggacaa agaccaaatg gtcgtctgcg
      481 gcaggagtaa ttgtgaaact attggaatta tcacccgtca gggccggaga gtccgccgtc
      541 aaggtgtaac cggtgcccgc cttgtcgatg gagagatcgt tgaaagtggc cgtcccgttg
      601 accgcggtca cggtcgtggt gccgctgagc gtgccgcccg aaggattact tccgatcgcc
      661 accaggacgg acgcggtgct cgaggtcagg tttccaaact ggtcccggat ctccacggta
      721 acttccggcg tgatgctgct tccggcctgc gtgtcgctag gctgctgcac gaacaccaca
      781 tgatcgtccg cagcgggcga aatgttgaag gtagaggaag tatgactcgt cagggccggc
      841 gagctggccg tcagggtata acccgtacct gtcttgtcga tggacaagtc gctgaaagtg
      901 gccgtgccag caaccgcgct tacggtggtc gtgccgctaa gcgtcccgcc gctggggtta
      961 ttttcgagga cgacggttac atcagccgtg ctcgaggtca ggtttccgta ttcatcatga
     1021 atctcaaccg tgaccgcggg agtaatactg cttccggcaa cggtgtcgct cggttgctgc
     1081 gtgaagacca ccttgtttgg cggcccgggc gtaatggtaa cagactcatt ggcagcgttg
     1141 catgggctgg taacgccatt gttgaacgta tcgccgctgt aggtggccac ccagcggtag
     1201 aggcccggaa cggtcgggaa aaatgggtcg gaaacgtaat cgtcattggc gatgaccgtg
     1261 tggttggagg tgtgaatggg cgcgcctccg cacgtcgcat cgtcaggccc atagagagtg
     1321 aatgtgatcg tcccggtggg cgcgatgccg cccgccaggg ttgcggtgtc tgttatttcg
     1381 ccaccggccg cagtgtccgg cgacgcttgc gtcgtgaggg tggggctggc tatcggtggc
     1441 gcgcctccgc tcgctccgcc gacccagaac agcaggccga aaaacagaac cacgagtccg
     1501 gcatttctaa ggaaaagcga ggtcgttcca cacgagagta tccgcgaaga ggatgttgac
     1561 ataggggacc gcgttaaacg acgtccaccg gatatccggc cccgttgtcc ctgccgaaaa
     1621 agtcgataag agtcgagtga cgtaatcgcc gccgttttta cgcggagcgc cggaatcgcg
     1681 tcaaggctat ttgctcccgc gttaccaaaa agcggcagcg caagtcgctg ctattccaga
     1741 ttgtagatct
//
LOCUS       DASVXZ010000985         3328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1520979, whole genome shotgun sequence.
ACCESSION   DASVXZ010000985 DASVXZ010000000
VERSION     DASVXZ010000985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1520979"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VF788_20655"
     CDS             <1..372
                     /locus_tag="VF788_20655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HEX8936542.1"
                     /translation="VVIISVTSENVPHVPHAEQLTIDELGHTDDGIVHLSARFGFQDE
                     WDIPAALRQAHGLSSELDLDPDNAYYFLSHITLERSRRPGMATWRKRLFIGLSHNAAT
                     PATYFKLPLHRTVVMGSRIEV"
     gene            620..1435
                     /locus_tag="VF788_20660"
     CDS             620..1435
                     /locus_tag="VF788_20660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013229183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8936543.1"
                     /translation="MSIATRHNINISGQPDGQPIVFAHGFGCDQNMWRYVAPQFEHEF
                     RVVLFDHIGAGNSDLSAYDPQRYSSLSGYAGDVVAICTELELRDVVFVGHSVSAMIGV
                     LAAAAAPELFTKLVLVGPSPRYVNDDDYVGGFSAEDISDMLESLESNYLGWSSAMAPV
                     IMGRSDRPELGKELTESFCRADPFIARQFAQVTFLSDNRADLPHVATPTLVLQCANDV
                     IAPVSVGKFVRDRMPNASMVMLDATGHCPNLSAPEVTAAAIEQFVRRSTLALQ"
     gene            1432..2619
                     /locus_tag="VF788_20665"
     CDS             1432..2619
                     /locus_tag="VF788_20665"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEX8936544.1"
                     /translation="MTSSGGEVFEGFYEALVDDDAEQLYDRAPCGYLSTTPDGTITKA
                     NQTFLTLTGYDRGQLIGQMRFAQLLSAGGRIYHETHYAPMLRMHGQAHEIAFDIVHAD
                     GSRLPVMVNSVLERDPHGAPTIVRTAVFDARVRREYERELLRAKQRAEESEARATALA
                     RTLQQTLIPPIPPVIPNLDVAAAYRPAGDGSEVGGDFYDVFQIGIDDWVVAIGDVCGK
                     GVGAAVVTSLVRHTLRAATVQNAEPSKALRALNHVLRGQHDTNRFCTVVLLRLRRARG
                     EWTGTVSCAGHPLPLLRQSNGALRAVGKPGALLGVVDAPHLHDAQISLLPGDTLLLYT
                     DGVTEGRSGKNFYGEERLAAAAARSLDSAEALTSAILNEVLEFQAGKPRDDIAVVVIR
                     APV"
     gene            complement(2629..2922)
                     /locus_tag="VF788_20670"
     CDS             complement(2629..2922)
                     /locus_tag="VF788_20670"
                     /inference="COORDINATES: protein motif:HMM:NF019542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HEX8936545.1"
                     /translation="MPFDVEEGETGVPEEQVRLDEVLVEIGDRLFYTYDFGDDWQHSI
                     RLEAIVCHEDSALRAVCTAGRRPGPAEDCGGVYGYELIAAARCRDSHVRLLGS"
     gene            2940..3143
                     /locus_tag="VF788_20675"
     CDS             2940..3143
                     /locus_tag="VF788_20675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936546.1"
                     /translation="MAVVLRPTTKPMQMIIGPAERDLDNVVEITEEQVGRDFKTTPQR
                     RSGSLEIDPDSIGDDVKTAWAPS"
BASE COUNT          634 a         1079 c         1005 g          610 t
ORIGIN      
        1 gtcgtgatca tctcggtcac gtcggagaac gtgccgcacg tcccacacgc cgaacagctg
       61 acgatcgacg agctcggcca caccgatgat gggatcgtgc acctttcggc ccgcttcggc
      121 ttccaggacg agtgggacat ccccgcggcg ctgcgccaag cccacggatt gtccagcgag
      181 ctcgaccttg acccggacaa cgcgtactac ttcctctccc acatcactct cgagcgcagc
      241 cgtcgcccgg gcatggccac ctggcgcaaa cgcctcttca tcgggctctc gcacaacgcc
      301 gccacacccg ccacctactt caaactgccc ctccaccgca ccgtcgtgat gggctcacga
      361 atcgaggtct gatcacatca gcgaacacgt gtagccgagg gtgacgttga gttcaccaga
      421 taggactagt actacctggc actttgctcg ccctatttgc gccgtcgaga caccagcaac
      481 gcccggagga ctggagttga tggacaagtc cacgagcgcc gctactacat cggttaaaac
      541 gggctggcag cctgctcgga catcgtcgga ctgactctcg tatccgccgt tggctgtccg
      601 ttctcggtag cctcacatgg tgagcatcgc gacccgacac aacatcaaca tctcggggca
      661 gcccgatggg caaccgattg tgttcgcgca cgggttcggt tgcgaccaga acatgtggcg
      721 ctacgttgca ccccagttcg agcacgagtt ccgcgtcgtc ctgttcgacc acatcggtgc
      781 tggaaactcc gatctgtcag cgtacgaccc gcagcgctac tcgtccctgt ctggctacgc
      841 cggggacgtc gtcgcgatct gtacagagct cgagctgcgc gatgtcgtct tcgtcgggca
      901 ctccgtgtcg gcgatgatcg gtgttctcgc ggcggccgcc gcgcccgagc tgttcaccaa
      961 gttggtgctg gtcggtccat ctccccgcta cgtcaacgac gacgattacg tcggcgggtt
     1021 cagcgcggag gacatcagtg acatgctcga gtcgctggag agcaactatc tcggatggtc
     1081 aagcgcgatg gctcccgtga tcatggggcg ttcggaccgg cccgagctgg gaaaagaatt
     1141 gactgaaagt ttctgccggg ctgatccgtt tatcgcgcgt cagttcgccc aggtcacgtt
     1201 tctttccgac aaccgtgcag acctgccgca cgtggcgacg ccgacgctcg tcctgcagtg
     1261 cgccaacgac gtcatcgcgc ccgtctccgt cggcaagttc gtgcgtgaca ggatgccgaa
     1321 tgcgtcgatg gtgatgttgg atgccaccgg gcactgtcct aatctctccg cgccggaggt
     1381 gacggccgca gcgatcgagc agttcgtgcg taggtcgaca ctcgcgctgc aatgacgtcg
     1441 agcggtggcg aggtattcga gggcttctac gaggcactcg tcgacgacga tgctgagcag
     1501 ctttacgacc gggcgccgtg cggctacctg tccaccaccc cggacgggac gatcaccaag
     1561 gcaaaccaga cattcctgac gctgaccggt tacgaccgcg gacagctgat cgggcagatg
     1621 cgtttcgcgc agctattatc cgccggtgga cggatttacc acgagaccca ctacgctccg
     1681 atgctcagga tgcacggcca agcgcacgaa atcgcgtttg acatcgtcca cgccgacgga
     1741 tcgcggctgc cggtaatggt caactccgtt ctcgagcgtg acccgcacgg ggctccgacg
     1801 atcgtacgga ccgcggtgtt tgacgctaga gtgcgccggg agtacgaacg cgagttgctg
     1861 cgcgcgaagc agcgcgcgga ggagtccgag gcgcgcgcta cggccttggc gcggacgttg
     1921 cagcagacgc tgatcccgcc gatcccaccg gtcattccaa atcttgacgt cgcggcggcg
     1981 tatcgaccgg cgggagacgg cagcgaagtg gggggcgact tttacgacgt cttccagatc
     2041 ggcatcgacg actgggtggt ggccataggc gacgtgtgcg gcaagggcgt cggcgctgcc
     2101 gtggtgacct cgctcgtccg ccacacgctt cgcgccgcca ccgtgcagaa tgctgagccc
     2161 tcgaaggcgc ttcgggcgct taaccacgtg ctccggggcc aacacgacac caatcgattc
     2221 tgcacggtcg ttctgctgcg attgagacga gctcgcggcg agtggaccgg cacggtcagc
     2281 tgtgcgggcc atccgcttcc gctccttcga cagtccaacg gagcgctgcg cgccgtcggg
     2341 aaaccaggag cgcttctagg cgtcgtagac gcgcctcatc tacacgatgc gcagatcagt
     2401 ctgctgccgg gtgacacgct cctgctctac accgatggcg tcaccgaggg gcgcagcgga
     2461 aagaactttt acggggaaga aaggcttgcc gccgccgcgg cgcgctcgct ggactccgca
     2521 gaagcgctga ccagcgcaat cctcaacgaa gtactggaat tccaagctgg taaaccacga
     2581 gatgacatcg ccgttgtcgt catccgcgct ccggtgtgat gccacgtgtc agctccccag
     2641 gagacgaacg tgactatctc gacacctggc tgcagcgatc agctcatagc cgtagacacc
     2701 gccgcagtcc tcggcgggtc ccggccgccg cccggcggta cagaccgctc gcagtgcgga
     2761 atcctcgtgg cacacgatcg cttcaagcct gatgctgtgc tgccagtcgt caccgaaatc
     2821 gtaggtatag aacagcctgt caccgatctc aactagcact tcgtccagac gcacctgctc
     2881 ctcgggaacg ccggtctcac cttcctccac gtcgaatggc acaagtagta ctccgtgtca
     2941 tggctgtagt actccgaccc acaaccaaac cgatgcagat gattatcggt ccagccgaac
     3001 gcgacctgga taacgtcgtg gaaatcaccg aggaacaggt cggacgcgac ttcaagacga
     3061 caccacaacg gcggtctggt tcccttgaga tcgatccgga ctcgataggt gacgacgtca
     3121 agacggcgtg ggcgccgtcg tgatgtcggt ggcgtctgct caaacggatc gacgccaact
     3181 gccccggcag cgaggacccg acgcagcatg ggacagccga cggaaaccct agcaactgcc
     3241 cgatcatggt gactagcgtt tgttctggta cctggcggag gatgtagcag ttgaacccgt
     3301 gagaagctat caaccccagc acgatttt
//
LOCUS       DASVXZ010000986         1926 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1074318, whole genome shotgun sequence.
ACCESSION   DASVXZ010000986 DASVXZ010000000
VERSION     DASVXZ010000986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1074318"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1000)
                     /gene="nusA"
                     /locus_tag="VF788_20680"
     CDS             complement(<1..1000)
                     /gene="nusA"
                     /locus_tag="VF788_20680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HEX8936547.1"
                     /translation="MNVDIAALRAIERDKDVSFETVLEAIETALLTAYKHTDGHEPNV
                     RIDVDRKTGLVRVLAQELDAEGNVVQEWDDTPEGFGRIAATTARQVILQRLRDAEHER
                     TFGEFSAKEGEIVAGVVQRDARANARGVVVVQIGETEGVIPPVEQAPRETYRHGERIK
                     CYVVGVSRGLRGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAV
                     RSTVAGVNAKGACIGPMGQRVRNVMSELGGEKIDIIDYSEDPATFVGNALSPSKVISV
                     QVVDARAKTARVVVPDFQLSLAIGKEGQNARLAARLTGWKIDIRSDANPMASPPART"
     gene            complement(997..1521)
                     /gene="rimP"
                     /locus_tag="VF788_20685"
     CDS             complement(997..1521)
                     /gene="rimP"
                     /locus_tag="VF788_20685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016700074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEX8936548.1"
                     /translation="MSAQPANPDSAIESAVRDAVDATGFELEDLEEVRAGQRRLLRVI
                     IDSDSGVGLDDIATVSRAVSQALDEHDELIAGPYQLEVTSPGVGRPLTQPRHWRRNRL
                     RLVRAALVAGGELVGRIGDCDDEGVTLLASGALRRVLYSELCRAVVEVEFRHPPAAEL
                     AALDGARRHDLEEQ"
     gene            1697..>1926
                     /locus_tag="VF788_20690"
     CDS             1697..>1926
                     /locus_tag="VF788_20690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936549.1"
                     /translation="MSQARPNRRRVLAAGASTAALVLAGPAALAGCAASAPAPEEPDP
                     LESPAQRAEADAAQAFAAAQLVTHADAGLAAAA"
BASE COUNT          296 a          697 c          611 g          322 t
ORIGIN      
        1 gggtgcgggc cggcggggac gccatcgggt tcgcatcact ccgaatgtcg atcttccacc
       61 cagtcagtcg ggcggccagt ctggcgttct gcccctcttt accgatcgcc aacgacagct
      121 ggaaatcggg aaccaccacc cgtgccgtct tggcccgagc atcgacaacc tgtaccgata
      181 taaccttcga cggggacagc gcattcccca cgaacgttgc ggggtcctcg gagtagtcaa
      241 taatgtcgat cttctcgcca cccagctcgc tcatcacgtt gcgcacccgc tggcccatcg
      301 gtccgataca ggcacccttg gcattgaccc ccgcgacggt cgagcggaca gcgatcttcg
      361 accggtgccc cgcctccctg gccaccgccg ggatctccac cgtgccgtcg gcgatctcgg
      421 ggacctcaag agcgaacagc cggcggacca ggttcgggtg cgtgcgggac agcgtgatct
      481 gcggtccgcg cagtccgcgc gatacgccca ccacataaca cttgatccgc tcaccgtgcc
      541 ggtaggtttc ccgtggtgcc tgctccaccg gcgggatgac cccttcggtc tccccgatct
      601 ggaccactac caccccacgg gcattcgccc tggcatcgcg ttgcacgacc ccggccacga
      661 tctcaccctc cttggcagag aactcaccga aggtgcgctc gtgctcggca tcacgcagcc
      721 gttgcaggat gacctggcgg gccgtggtgg ccgcaatccg cccgaatccc tccggggtgt
      781 cgtcccactc ctgaacgacg ttgccctcgg cgtcgagctc ctgggccagc acccggacca
      841 gaccggtctt gcggtcgacg tcgatgcgaa cgttcggttc atggccatcg gtgtgcttgt
      901 acgccgtgag cagcgctgtc tcgatggcct caagcaccgt ctcgaatgag acgtccttgt
      961 cccgctcaat agcgcgcagc gcggcgatgt cgacgttcac tgttcctcca aatcatgccg
     1021 tcgtgcgcca tcgagcgcag cgagctccgc ggcgggcgga tggcggaact ccacttccac
     1081 caccgctcgg cacagctctg aataaagcac tcggcgaagg gcacccgacg ccagcagggt
     1141 gaccccctcg tcgtcgcagt ccccgatccg gccgaccagc tcaccaccag ccaccagggc
     1201 ggcacggacc aggcgtagcc ggttgcgccg ccagtgccgt ggctgggtca gcggtcggcc
     1261 gactccgggc gatgtcacct cgagctggta gggaccagcg atcagctcgt cgtgctcgtc
     1321 cagagcctgc gacactgcgc ggctcaccgt cgcgatgtcg tccagcccga cgccgctgtc
     1381 cgagtcgatg atcactcgaa gcaaccggcg ctgacctgcg cgcacctcct cgaggtcctc
     1441 aagctcgaac ccggtggcgt ctactgcgtc gcgtactgcc gactcgattg cggagtcggg
     1501 attcgcgggc tgggcgctca ccgtggcctc ctgacgtgcg aagtgctgcc tgtggacgat
     1561 gtggcgatgc gggcggcgag ccagcggcgc gcccgatcgg atcacctagg gtatcgcgtc
     1621 gcgagaccaa cccgcgccaa gtggatcacg gtgctgagcc cgcctcaaac agtagagcct
     1681 ggcaagatgt gccgctgtgt cgcaggcccg tcccaaccgt cgccgggtgc tggccgccgg
     1741 ggcaagcacg gcggctctgg ttcttgctgg cccggcggcg ctggccgggt gcgccgcgtc
     1801 cgcacccgcg cctgaggagc ccgatccgct ggagtcacct gcccagcgcg ccgaggctga
     1861 cgcggcccag gcgttcgcgg cggcgcagct ggtgacccat gccgatgctg ggttggccgc
     1921 ggcagc
//
LOCUS       DASVXZ010000987         1962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1522612, whole genome shotgun sequence.
ACCESSION   DASVXZ010000987 DASVXZ010000000
VERSION     DASVXZ010000987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1522612"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            499..1392
                     /locus_tag="VF788_20695"
     CDS             499..1392
                     /locus_tag="VF788_20695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013672279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936550.1"
                     /translation="MDSEDAVGRGTSGVTGNGDAHDEVGPDHLRALSAVRTELSRLEE
                     VLCAGHHPVSEAAARVARAVDSSTVTTRAAAHHLHVPAWLRVTPGENRWPVAAAIVVA
                     IGLQLALPDRLALQSRWLLPGLELAMLIGLIIASPVRFNRESTALRITSLTLTGLLSL
                     ANAWSATLLILGLVEGTEGRDAAPLLSTGAAIWLTNIIAFAVWYWQFDRGGPAARAHA
                     RRLLPDFQFVQMQNPDLAHPEWEPQFVDYLYLSFTNATAFSPTDVMPLSRWAKLTMLG
                     QSLISLVTLALVIARAVNILK"
     gene            1557..1946
                     /locus_tag="VF788_20700"
     CDS             1557..1946
                     /locus_tag="VF788_20700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936551.1"
                     /translation="MASVPGGVSHLARPCGSQLHRRPRRAASQPSNYLAVLSGSTHGI
                     TGDSCPQPPGNQPTWHANCSTLAGFTGYSEDLPSVCFTGCSASDRRYARNHKRSVDFA
                     NLPQDLAALPTVAVVVPNLCPTCTTAP"
BASE COUNT          341 a          686 c          599 g          336 t
ORIGIN      
        1 agatccataa tattggttcc tttcccggct tggacgcacg tacgggactt atcaacggtg
       61 tttctgcggc gcgggggtat gcctgtcgaa taacggaaac cgtatggcct caaaatgggc
      121 ctgcaagtcc agaaaattgc cctgatacgc ggtgatctac agacagatcc accttgacaa
      181 catcgggcag atcagcgacc gcggcgcaca aggcggtacg caggttggtc atgatccact
      241 cgcctgaggg accgcatcgc cgatgaggac gatggctctg ctctcatcga cgggccaggc
      301 cccggccgtg acaccaccgt gagacgccgc cccgtgcccg acgggttggt tgtcgaaaca
      361 cctgcggtcc tgacgcgcgg agtcgcaacg cgtgccttga ccgcatcgcc cgatgaaccg
      421 ggggcagata ctggtgtcac tgacggctgg ctgggagcga tgatgaccaa cgctgaggat
      481 cgaggcgagg tgggccccgt ggacagcgag gacgctgtgg ggcgcggcac cagcggcgtt
      541 accggcaacg gcgacgccca tgatgaggtg ggaccagatc acctgcgtgc gctgagcgcg
      601 gtccgtacgg agctgtcccg tttggaggag gtgttgtgcg ccgggcacca cccggtgtca
      661 gaggccgctg cccgagtggc tcgtgcggtt gactccagca ccgtgactac ccgtgccgcc
      721 gcgcatcacc tgcacgttcc ggcgtggtta cgcgtcaccc ccggagagaa ccggtggccg
      781 gtcgccgccg cgatcgtggt ggccatcgga ttgcagctcg cgctacccga caggttggct
      841 ctgcagtccc ggtggttgct acccggcctg gagctagcca tgctgatcgg attgatcatc
      901 gccagtccgg ttcggttcaa ccgggaatcg accgcgctgc ggatcaccag cctgaccctg
      961 accgggctgc tcagcctggc caatgcatgg tcagcgacct tgctgatcct gggcctggtg
     1021 gaaggcaccg aaggcagaga cgccgctcct ctgctgtcca ccggggcagc gatctggctg
     1081 accaacatca tcgccttcgc cgtgtggtac tggcaattcg accggggcgg accagccgcc
     1141 cgcgcgcacg ctcggcgtct gctacccgac ttccaattcg tgcagatgca aaaccccgac
     1201 ctcgcccacc ccgagtggga accgcagttc gtcgactatc tctacctctc cttcaccaac
     1261 gccaccgcct tcagccccac cgacgtcatg ccgctatccc ggtgggccaa actgaccatg
     1321 ctcggacaat ccctgatttc gctggtcacc cttgctctgg tcatcgcccg tgcggtcaac
     1381 atcctcaaat aacagacccc gaccaccgaa caggaaagga gcgtcctcgg tgatccagtg
     1441 ggagccagcc tgggacccgc ggcgagtgcg ctggcgcggc actgacgacg gtgctgctgc
     1501 tcggcaggtg tggctcgggc cccaccgtcc cagcggcgaa cccgagcggg cggcccgtgg
     1561 ccagcgtgcc cggtggggtt tctcacctcg ctcgcccatg cgggagccag cttcaccgac
     1621 gcccacggcg ggcagcatcc cagccatcga actacctggc agtgctctcc ggatccaccc
     1681 acggcatcac cggtgactcc tgtccccagc caccagggaa tcagcccacc tggcacgcca
     1741 actgctcgac gctggcgggt ttcaccggtt actccgaaga cttacccagt gtctgcttca
     1801 ccggctgctc cgcgtcagac agacgctacg cacgcaacca caagcgctcg gtcgacttcg
     1861 ccaaccttcc gcaagacctc gccgccctgc ccaccgtcgc tgtcgtggtc cccaacctgt
     1921 gcccgacatg cacgactgct ccgtgacgac cggcgacgcc tg
//
LOCUS       DASVXZ010000988         1756 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1329548, whole genome shotgun sequence.
ACCESSION   DASVXZ010000988 DASVXZ010000000
VERSION     DASVXZ010000988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329548"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1348
                     /gene="crtI"
                     /locus_tag="VF788_20705"
     CDS             <1..1348
                     /gene="crtI"
                     /locus_tag="VF788_20705"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018686264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016166 - phytoene dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phytoene desaturase family protein"
                     /protein_id="HEX8936552.1"
                     /translation="VLTMPELVDEALAAVGDSLAERLELVALHPAYRARFADGSVIDV
                     HTNAEAMEAEIRAVAGASEAIGYLRLRRWLTRLYQVEIGRFIGGNFDSPLDLVAGRDA
                     VRDLATLAALGGFGRLGTQVGRFLHDERLKRIFSFQSLYAGVPPQHALGAYAVIAYMD
                     TVAGVWFPRGGMQALPQALADAASNAGAELHYQATVTALEHSGDRVTAVRTAEGQRIT
                     ADAVVLTPDLPVVHRLLGRAPWRLVPLRWSPSAVVLHAGVRPGTGPGWTGLAHHTITF
                     GQAWERTFDEIIYRGRLMTDPSLLITRPTATDPSLAPEGRELLYILAPCPNLHTAPLD
                     WSTLGSAYRDELVGTLERRGLTDLGEAIDVEQLITPADWAAQGLAAGTPFSAAHTFVQ
                     TGPFRPANLVRGRSNVVLAGCGTTPGVGVPTAIISGKLAAARITSAGAQQRSAMSG"
     gene            1537..>1756
                     /locus_tag="VF788_20710"
     CDS             1537..>1756
                     /locus_tag="VF788_20710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936553.1"
                     /translation="MLLDRLRPGRLLSGTVLLGLTGSVLIAMMAIGAGGILVTDPLIT
                     GGSLSWTRYGHGHDLATVGLYLGVGMLVW"
BASE COUNT          266 a          605 c          600 g          285 t
ORIGIN      
        1 cgtgctcacc atgccggagc tggtcgatga agcgctggcc gcagtgggcg actcactcgc
       61 cgagcggttg gagctggtgg cgcttcaccc ggcctaccga gcccgtttcg cggacggctc
      121 ggtgatcgac gtgcacacca acgccgaggc gatggaggcc gagataaggg cggtcgccgg
      181 tgccagcgaa gcgatcggct acctgcggct gcggcgctgg ctgaccaggc tgtaccaggt
      241 cgagatcggc cggttcatcg gtggcaattt cgattccccg ctggatctgg tggcgggccg
      301 ggacgccgtc cgcgatctcg ccacgctggc cgcgctgggc ggcttcggcc ggctggggac
      361 ccaggtcggt cgtttcctgc atgacgagcg gctgaaacgg atcttctcct tccagtccct
      421 ctacgccggc gtaccccccc agcatgcact cggggcatac gcggtgatcg cctacatgga
      481 taccgtggcc ggagtctggt tcccccgggg gggaatgcag gcgctgccac aggcactggc
      541 cgacgcagcc tccaacgccg gcgcggaact gcactaccag gcgacggtaa ccgccctgga
      601 gcactctgga gatcgcgtca ccgcggtccg cacagccgag ggccaacgga tcaccgcgga
      661 tgcggtggta ctgacgcccg atctcccggt ggtgcaccgg ctgctcgggc gagcgccatg
      721 gaggctggta ccactgcgct ggtcaccctc agcggtggtg ctgcacgccg gcgtccggcc
      781 gggcaccggg cccgggtgga cagggctggc acaccacacg atcaccttcg gtcaggcgtg
      841 ggagcgcacc ttcgacgaga tcatctaccg tggacggctg atgaccgatc catcactgct
      901 gatcacccgt ccgaccgcca ccgaccccag cctggccccc gaaggccggg aactgctcta
      961 catcctcgcg ccctgtccca acctgcacac cgcaccgctg gactggtcca ccctcggctc
     1021 tgcttaccgt gacgaactgg taggcacgtt ggagcggcgg ggactcaccg atctgggaga
     1081 ggccatcgac gtcgagcagt tgataactcc cgcggactgg gccgcccagg ggctggcggc
     1141 cggaacgccg ttctccgcgg cgcacacctt cgtgcagacc gggccgttcc gtccagcgaa
     1201 tctggtgcgc gggcggagca acgtggtact cgccgggtgc ggcacgacgc caggtgtcgg
     1261 ggtgcccacc gcgatcatct ccggaaagct cgctgcggcc cggatcacca gcgccggagc
     1321 acagcaacgc agcgcaatga gcggctgaca ccggctgtcg cgatgcgccg aggtcactac
     1381 taggtcacga cctggtcact gccggtttcg cctgctccac gctgtgggaa catacgggcc
     1441 gtcatgacga cgaaccctca gcctgcgaca acgatccctg gctacgcgcc tcccgcgtcg
     1501 cggccagatc acgggtcgca acagcaacga cctccgttgc tgctcgaccg gctgcgcccg
     1561 gggcggctgc tctcgggcac tgtgctgctg gggctgaccg ggtcggtgtt gatcgccatg
     1621 atggcgatcg gggccggcgg cattctggtc accgatccgc tgatcaccgg aggttcgctt
     1681 tcctggaccc ggtacgggca tgggcatgac ctggccaccg tggggctcta tctcggtgtc
     1741 gggatgctgg tgtggg
//
LOCUS       DASVXZ010000989         5176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1075390, whole genome shotgun sequence.
ACCESSION   DASVXZ010000989 DASVXZ010000000
VERSION     DASVXZ010000989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5176
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1075390"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..866
                     /locus_tag="VF788_20715"
     CDS             <1..866
                     /locus_tag="VF788_20715"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX8936554.1"
                     /translation="LVPRIQQITDELLDAMATETLADLITSFALPLPIAVICELVGVP
                     ANRRAEFHDWSSTVVTGVLAGPDALAAAITALVSYLRELVEIKRAAPADDLLSALVAA
                     RDGEDRLSDDELTSMVFLILVAGHETTVNLIGNGMLALLTHPDQWELLRAQPDRLPTA
                     VEELLRFDGPLQVATPRRTAAPVDIGGVTVPADEIVLIGLLAANRDPACTARAEALDI
                     TRTDNPHLTFGHGIHHCLGAPLARLEGRIALGALLSRFPQLRLAVPVEQLIYRSGVLM
                     NGLTTLPVILR"
     gene            complement(940..1263)
                     /locus_tag="VF788_20720"
     CDS             complement(940..1263)
                     /locus_tag="VF788_20720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020671262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2469 domain-containing protein"
                     /protein_id="HEX8936555.1"
                     /translation="MSTEDLEKYETEMELSLYKEYRDVVGQFAYVVETERRFYLANAV
                     DVQPRNAEGEVYFEVRMSDAWVWDMYRPARFVKNVRVLTFKDVNIEEVDKPDLRLPEP
                     GPFGG"
     gene            complement(1271..2098)
                     /locus_tag="VF788_20725"
     CDS             complement(1271..2098)
                     /locus_tag="VF788_20725"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020495176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX8936556.1"
                     /translation="MTGSTSQALPRPPRALVRRDGGTWTLQAVLHRKGLGPVAGVDEA
                     GRGACAGPLVVAACVLRPADAVALAGLADSKLLTAARREHFHDLIVSRALARSVVVIP
                     PDEVDALGLHVANLEGMRRAVAGLAMHPGYVLTDGFRVPGLTAPNMAVIGGDRAAACV
                     SAASVLAKVTRDRIMGDLHSRMPWYGFGEHKGYCTPEHNGSLLVHGPCVEHRFSYVNV
                     VRAARLHGMTAPPGRRVSKARAESGPEWRIADHDDGTSGRNQHTMKRPTQQSMDNPR"
     gene            complement(2114..3016)
                     /gene="lepB"
                     /locus_tag="VF788_20730"
     CDS             complement(2114..3016)
                     /gene="lepB"
                     /locus_tag="VF788_20730"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013227333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEX8936557.1"
                     /translation="MAHLARLTESARGDDPSDSRGRRVHRHRLSKRKKGSFWRELPVL
                     VLTALVLTFLIQTFLARVYVIPSASMEPTLHGCPGCTNDRVLVDKLSYRFSSPRPGDV
                     VVFRGTDSWGSEFVSQRSDNLLVRGLQQAGSVIGLAPPDERDFVKRVIAVGGQTVKCC
                     DKQNHVIVDGASLTEPYAVFIGQEPQEEFGPVTVPPGNLWMMGDNRNNSADSRRHVAD
                     QRSGTVPVSNVIGKARVIVLPVSRWQGIADPDPQPAKPLGALGVPTPFWPDELPRGAG
                     LLLSWPVLRGGQALRERVVARRRG"
     gene            complement(3053..3412)
                     /gene="rplS"
                     /locus_tag="VF788_20735"
     CDS             complement(3053..3412)
                     /gene="rplS"
                     /locus_tag="VF788_20735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009943621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEX8936558.1"
                     /translation="MNTLDALDAKSLRTDIPDFRPGDTLKVHVRVIEGSRQRVQIFQG
                     AVIRRQGGGARETFTVRKVSFGVGVERTFPVHTPNIAKIEVVTRGDVRRAKLYYLRDL
                     RGKAAKIKEKRETPSAS"
     gene            complement(3590..4342)
                     /gene="trmD"
                     /locus_tag="VF788_20740"
     CDS             complement(3590..4342)
                     /gene="trmD"
                     /locus_tag="VF788_20740"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020661663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEX8936559.1"
                     /translation="MLIQVVTIFPEYLAPAREALLGRAIERDLIEFTVHDLRDWAHDV
                     HRSVDDAPYGGGPGMVMRPDVWGEALDDVLAGGPSPRLIVPSPAGRPFTQQLAGELAR
                     QPRLVFACGRYEGIDQRVIDDAADRVTVDEISIGDYVLVGGEAAVLVMVEAIARLLPG
                     VLGNPASAMQDSFSDGLLEGPCYTRPEIWRGREVPDVLRSGNHAAIARWRRDRAVERT
                     AARRPDLLAALPPGALDGADRALLGELPTPPG"
     gene            complement(4356..4901)
                     /gene="rimM"
                     /locus_tag="VF788_20745"
     CDS             complement(4356..4901)
                     /gene="rimM"
                     /locus_tag="VF788_20745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019811251.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEX8936560.1"
                     /translation="MQPSTNPPSRNTAGGDTQRVVGRIGRPHGLRGEVTVQLRTDFPE
                     QRFAAGSQLRGDIGRSLVVETARPHRGALLVRFAGIADREAAAELCGCTLSIDAAELP
                     DLADPEEFYDHQLEGLVAVGPDGTALGTVREVVHAPASDLLVLDTEHGDVLVPFVQAI
                     VPHVDVAGGRLVLDPPVGLFD"
     gene            complement(4926..5165)
                     /locus_tag="VF788_20750"
     CDS             complement(4926..5165)
                     /locus_tag="VF788_20750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005444189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEX8936561.1"
                     /translation="MSMLADALEHLVRGIVDNPDEVRVQLVTTRRGRTLEVHVHPDDL
                     GKVIGRGGRTATALRTVIGGIGGRGVRVDVVDTDR"
BASE COUNT          892 a         1822 c         1619 g          843 t
ORIGIN      
        1 aactcgtgcc acgaatccag cagatcaccg acgagctgct cgacgcaatg gccaccgaga
       61 cactcgcaga tctgatcacc tcgttcgcgc tcccgctgcc gattgccgtg atctgcgaac
      121 tggttggcgt gcccgccaac cggcgcgcgg agttccatga ctggagctcc accgtggtga
      181 ccggggtgct ggccgggccg gacgccctag cggccgcgat caccgcgctg gtgagctacc
      241 tgcgcgagct ggttgagatc aagcgcgccg ctcccgccga tgacctgctc tccgcgctgg
      301 tagccgctcg cgatggcgag gaccggcttt ccgacgacga actcacctcc atggtgttcc
      361 tcatcctcgt cgccggccac gagaccaccg tcaacctgat cggcaacggg atgctcgcgc
      421 tactcaccca ccctgaccag tgggagttgc tgcgcgcgca gccggaccgg ctgccgacgg
      481 cggtcgagga gctgttgcgc ttcgacggcc cgctgcaggt agcgactcca cgccgcactg
      541 ccgcaccggt cgacatcggc ggagtcactg tcccggccga tgaaatcgtg ctgatcggcc
      601 tgcttgccgc caaccgcgat ccggcgtgca ccgcgcgggc cgaggccctg gacatcaccc
      661 gcacggacaa cccgcatctg accttcggcc acggcatcca ccattgcctc ggggcacccc
      721 tggcccggtt ggaaggccgc atcgcgctcg gtgccttgct cagccgcttc ccccagctcc
      781 ggttggcggt gcccgtcgag cagctgatct accgatcagg cgtgctgatg aacggcctca
      841 ccacactgcc cgtgatcctg cgctgacggt gtccgcgatg ccgacgccag ctcggcgggc
      901 tggcatagcc gtcgccgata agccgcggca atgtagtggt cagccgccga acggaccggg
      961 ctcgggcagt cttaagtcgg gtttatcgac ttcttcgatg ttgacatcct tgaaggtgag
     1021 gactcggacg ttcttaacga accgggcagg tcggtacata tcccacaccc aggcatcgga
     1081 catccgcacc tcgaagtaca cctcgccctc ggcgttgcga ggctgcacat ccacggcgtt
     1141 ggccagatag aagcgccgct cggtctccac gacataggcg aattgaccga cgacgtcgcg
     1201 gtactccttg tagagcgaca gctccatctc ggtctcgtat ttctcgagat cctcagtgct
     1261 cattgggggc tcatcgggga ttatccatcg attgctgcgt gggtcgcttc atcgtgtgct
     1321 ggttcctccc gctcgtgccg tcgtcgtggt cggcgatcct ccattctgga ccactctccg
     1381 ctcgggcttt actcacgcgt cgccccggtg gggcggtcat gccgtgcagg cgcgccgccc
     1441 gcaccacgtt gacgtagctg aaccggtgtt caacacaggg accatgcacc agcagcgacc
     1501 cgttgtgctc cggtgtgcaa taacccttgt gctcaccgaa tccataccac ggcatccggc
     1561 tgtgcagatc acccatgatg cgatcgcggg tcactttggc cagcaccgag gccgccgata
     1621 cacatgccgc ggcgcgatcc ccgccgatca ccgccatgtt tggagcggtc aggccgggca
     1681 ctcggaaccc gtcggtgagc acataaccgg ggtgcatggc caggccggca acggcgcgcc
     1741 gcataccctc caggttggcc acgtgtaggc ccaacgcgtc gacttcatcg ggtgggatga
     1801 cgacgacgct tcgggccagc gccctggaga cgatcagatc atggaaatgc tcccggcgcg
     1861 ccgcagtgag cagcttggag tcggcaagcc cagccagcgc caccgcatcg gccggccgca
     1921 acacgcaggc cgcaaccacc aacgggcctg cgcacgctcc tcgaccagct tcgtccaccc
     1981 cggcgaccgg acccaggccc ttgcggtgca aaacagcctg caaggtccac gtgccgccgt
     2041 ccctgcgcac tagcgccctc ggcggtcgcg gcagggcttg agaggtgctg cccgtcatgg
     2101 ccggcactcc tggtcagcct cgcctgcggg ctaccacccg ctcccgcaag gcttggccgc
     2161 ctcgcaacac cggccagctc agcagcagcc cagcaccccg aggcagctca tcaggccaga
     2221 aaggcgtggg caccccgagc gcgccgagcg gtttggcagg ctgtggatca ggatccgcga
     2281 tgccctgcca ccgtgatacc ggcagcacga tcacccgggc cttcccgatc acattactca
     2341 ccggcacggt gcccgagcgc tggtcagcga cgtgccgtct cgagtccgcg ctattgttcc
     2401 ggttatcccc catcatccac aggttgcctg ggggcaccgt gacggggccg aactcctcct
     2461 gaggctcctg cccgatgaag acggcataag gctcggtaag cgaggcgccg tcgacgatga
     2521 cgtggttttg cttatcgcag cacttcacgg tctggccgcc gacagcgatc accctcttga
     2581 cgaagtcccg ctcgtccggg ggagcgaggc cgatcaccga gccggcctgc tggagccctc
     2641 gcaccagcag gttgtctgat cgctggctga cgaactcgct gccccaggag tcggtgccgc
     2701 ggaacaccac cacgtctccc ggtcggggac tgctgaaccg gtaggacagc ttgtcgacca
     2761 acacccgatc gttggtgcag cccggacagc cgtgcagggt gggttccatc gacgccgagg
     2821 gaatgacata aacccgggcc aagaatgtct ggatcagaaa cgtcagcacc agcgcggtga
     2881 gcaccaagac cggcagctcg cgccagaagg atcccttctt gcgcttggac aggcgatgcc
     2941 ggtgcacacg gcggccccgg gaatcgctgg gatcgtcgcc gcgagcggat tcggtcaagc
     3001 gagccaggtg ggccacgtcc tcaggctatc gacacacggc cggtgctggg gatcaggacg
     3061 ccgacggcgt ctcgcgcttc tccttgatct tcgctgcttt cccgcggaga tcacgaaggt
     3121 agtacaactt ggctcgccgg acatcgccgc gggtgaccac ctctatcttg gcgatgttcg
     3181 gggtgtgcac cggaaaagta cgctccacac ccaccccgaa agacaccttg cgcacggtga
     3241 aggtttcccg cgctcccccg ccctgacggc ggatgaccgc accttggaat atctgtaccc
     3301 gctggcgtga accctcgatg acacggacgt gcaccttgag cgtgtcaccg ggccggaaat
     3361 cggggatatc ggtccgcagc gacttcgcgt ccagggcgtc cagggtgttc atcggagtcc
     3421 atcctcgtct tcgggtgccg tacacggtcg ggagcgccca tgatggacgc aaacagcggc
     3481 ttgggcgaca ttcgggactt ccgccctggg ggcagtcccc aacattgctc cgctgtggta
     3541 accggctcag tgtgccagac gcggtcgtgc acgatgaaac tgggcggtct cagccgggcg
     3601 gggtaggcag ctccccgagg agggcgcggt ctgcaccatc cagcgcgccg ggcggcaacg
     3661 ccgcgagcag atcggggcgc cgagcagcgg tgcgctccac ggcgcggtcc cggcgccagc
     3721 gggcgatcgc cgcatggttg cccgagcgca gcacatcggg aacctcccgg ccccgccata
     3781 tctcgggacg ggtgtagcaa ggtccttcca gcagtccatc agagaatgag tcctgcatcg
     3841 ccgatgcagg gttgcccagc acgccgggca gcagcctcgc gatggcctcg accatcacca
     3901 ggacggcagc ctcccccccg acgagcacgt agtccccgat cgagatctca tcgacggtca
     3961 cccggtcggc tgcgtcgtcg atcactcgct gatcgatgcc ttcatagcgg ccgcaggcga
     4021 aaaccagccg gggttgcctc gccagctcgc cggcgagctg ctgggtgaaa gggcgaccgg
     4081 cggggctggg cacgatcaac cggggcgatg gcccaccggc gagcacgtcg tccagcgcct
     4141 caccccagac gtcggggcgc atcaccatgc cgggtccacc gccgtagggc gcgtcatcca
     4201 ccgatcggtg tacgtcgtga gcccagtcac gcagatcatg cacagtgaac tcgatcaaat
     4261 cccgctcgat ggctcggccg agcaaggcct ccctggccgg ggccaggtac tccgggaaga
     4321 ttgtcactac ctgaatgagc acaactcaac acgcctcagt cgaacaagcc gacaggtggg
     4381 tcgagcacca accggccacc agccacgtcc acgtggggca cgatggcctg gacaaatggc
     4441 accagcacgt cgccgtgttc ggtgtccagc accagcaggt cgctggctgg ggcgtgcacg
     4501 acctctcgaa cggtgcccag cgcggtgcca tcaggcccca ccgcaaccaa gccctcaagc
     4561 tggtggtcgt agaactcctc gggatcggcc agatcaggca gttcagcagc gtcgatgctc
     4621 aacgtgcaac cacacagctc ggccgccgcc tcccgatcgg ctatcccggc gaatcgcacg
     4681 agcagggcgc cccgatgggg gcgagcagtc tcgacaacga gggaacgacc gatgtcacca
     4741 cgcagttgcg agccagcggc gaatcgctgt tcgggaaagt cagtacgcag ctgcaccgtg
     4801 acttccccgc gcagcccgtg tggccggccg atcctgccga cgacccgctg ggtatccccg
     4861 cccgcggtgt tcctgctcgg cgggttagtg ctcggctgca cggtcgacgc tttcagctac
     4921 cacgctcagc ggtcggtgtc gacgacgtca acgcgaaccc cacggccgcc gataccgcct
     4981 atcaccgtgc gtaacgctgt ggcggtacgc ccaccacgac cgatcacttt gccgaggtca
     5041 tcgggatgga cgtgtacctc cagggtgcgg ccccgccgcg tagtcaccaa ctggacgcgc
     5101 acctcatcgg gattgtcgac gatccctcgc acgagatgct cgagcgcgtc cgccagcatg
     5161 ctcacacctg gccgtc
//
LOCUS       DASVXZ010000990         3062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1523055, whole genome shotgun sequence.
ACCESSION   DASVXZ010000990 DASVXZ010000000
VERSION     DASVXZ010000990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523055"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..995
                     /locus_tag="VF788_20755"
     CDS             <1..995
                     /locus_tag="VF788_20755"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX8936562.1"
                     /translation="TTGTVLGAITYVSMALQPALRTLIRGVGGNGLWLFVTLRRLVEA
                     AQVEAAQCPANAEREGDRHLEPRDQASRDRPDGCVVELRGVTFAYGDFADPVIRDLEL
                     FLSDGDHLAVVGPSGVGKSTLAGLIAGLLTPQTGQVLLCGVDMSQWDGQDVARRRVLI
                     PQEAYVFAGTVGENLTYLSDDPTSPQITAAIDAVGARELVERLGGCSAAVEPATLSAG
                     ERQLLTLVRAYLSPARLVILDEATCHLDPVKDARVERAFAQRPGALVVMAHRISSAMH
                     ARRVLVLDGSRALLGTHRELLTCSALYRDLVGHWQPMQTHGAEAGMPKDGARWC"
     gene            1142..1214
                     /locus_tag="VF788_20760"
     tRNA            1142..1214
                     /locus_tag="VF788_20760"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1175..1177,aa:Trp,seq:cca)
     gene            1311..1676
                     /gene="secE"
                     /locus_tag="VF788_20765"
     CDS             1311..1676
                     /gene="secE"
                     /locus_tag="VF788_20765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016698060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEX8936563.1"
                     /translation="MSEDRAHETEDRLEQADAPQSAAAVRRERSGGRPTHVENTGTPG
                     KDHPTRARGVSDTKVAAPARLVRFLREVVSELTKVIWPSRRELVIYTAVVLVFVSFMV
                     AFVSLLDMGLGRAVLTVFG"
     gene            1745..2590
                     /gene="nusG"
                     /locus_tag="VF788_20770"
     CDS             1745..2590
                     /gene="nusG"
                     /locus_tag="VF788_20770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016331056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEX8936564.1"
                     /translation="MTSPAGTSADDGQELTGPFGDDTPQVDAPQADTPQIDTTQMDTP
                     DVDTPHVDTPEISEEVENADRDAEVASAQPAEPADPVDELRSALATAPGEWYVVHSYA
                     GYENKVKANLETRIQTLDVEEYIFQVEVPTEEVTEIKNGQRKQVQRKVLPGYILVRMD
                     LNDASWSAVRNTPGVTGFVGATSRPSPLTLDEVLKFLAPRVAQPKVPVGAGKHVGGVG
                     GAKPTIEVDFEVGESVTVMDGPFATLPATINEVNVDAQKLKVLVSIFGRETPVELSFS
                     QVAKI"
     gene            2636..>3062
                     /gene="rplK"
                     /locus_tag="VF788_20775"
     CDS             2636..>3062
                     /gene="rplK"
                     /locus_tag="VF788_20775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019513971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEX8936565.1"
                     /translation="MPPKRRKRLAATVKLALEAGTANPASVGQALGPHGLNIMEFCKA
                     YNAATQNNRGEVVPAVISVYEDRSFDFVLKTPPASVLLLKAAGIAKGSAEPHKAKVAK
                     IGREQLRAIAERKREDLNANDIDAAIKIIAGTARSMGIAV"
BASE COUNT          564 a          947 c         1031 g          520 t
ORIGIN      
        1 cgacgaccgg cacggtgctc ggtgcgatca cttacgtgtc catggcgctt cagccggccc
       61 tgcggaccct gatccgcggc gtgggcggca atggactgtg gttgtttgtc acgctgcgtc
      121 gcctggttga ggctgcccag gtagaagcgg cgcagtgtcc ggcgaacgcg gaacgcgagg
      181 gggacaggca cctcgaaccg cgcgaccagg cgagccgtga ccgccccgat ggttgtgtcg
      241 tggagctgcg cggcgtcacc ttcgcttacg gcgacttcgc cgatccggtg attcgtgacc
      301 ttgagttgtt cttgtctgat ggtgaccacc tagcggtcgt cggcccgagt ggggtgggca
      361 agtcgactct cgccggactg attgctggcc tgctgacgcc gcagactggt caggtgctcc
      421 tgtgcggggt cgacatgtct cagtgggatg gccaagacgt cgcccggcgc cgggtgctga
      481 tcccgcagga ggcctacgtc ttcgccggca cggtggggga gaatctgacc tacctgtccg
      541 acgatccgac ctcgccgcag atcactgcag cgatcgacgc cgtcggggcc cgggaactcg
      601 tcgaacgcct cggtggctgc agcgccgccg tggagccggc aacgttatcc gcaggtgagc
      661 gccagctcct caccctcgtc cgcgcctatc tctcaccggc gaggttggtg attctggacg
      721 aagcgacctg ccacctggac ccagtgaaag atgcgcgcgt cgagcgagcc ttcgcccaac
      781 gtccgggtgc actggtggtg atggcccatc ggatcagctc ggcgatgcac gccaggagag
      841 tcctcgttct cgatggcagc cgagcgttgc tgggcactca ccgggagttg ctgacctgct
      901 cggcgctcta ccgggatttg gtagggcatt ggcaaccaat gcaaactcat ggtgcagagg
      961 ctggaatgcc taaggacggg gcaaggtggt gctagagacc cgcggttgga gtgaaccgga
     1021 ctcggtggcc tacactctgt gcggctgggt taccagcgga tcgctcgtgc ccggtggtcg
     1081 ccgtggtgcg ggctatcgcg aggagcccac cgtgcgactt ctcgaggagt catcgagaaa
     1141 taggggtgta gctcaactgg cagagcagcg gtctccaaaa ccgcaggttg caggttcaag
     1201 tcctgtcgcc cctgcgctag atgcaactat gttcgatacg acgccggtgt ggacttgaac
     1261 cggccacgac ccaaccgcca gatagcccgg cgatgcggag gatcatcaac gtgagcgagg
     1321 atcgcgccca cgagacggag gatcggctgg aacaagccga tgctccgcag tccgctgccg
     1381 cagtacgccg ggagcgttcc ggtggccgac ccactcatgt ggagaacact ggtactcccg
     1441 gcaaggatca tccaaccagg gcccgtggag tatctgacac caaggtggcc gcgccggcgc
     1501 ggctggtgcg attcctccgc gaggtcgtct ccgagctcac aaaggtcatc tggccgagcc
     1561 gccgggagct cgtgatctac accgcggtcg tgctggtctt cgtcagtttc atggtggcgt
     1621 ttgtgtcttt gctggacatg gggctgggcc gggccgtgct gacggtcttc ggctgatgcc
     1681 gggtacccgt gcgccggctg atgaccagca cggtatgacg caagtacaga aagcgagatg
     1741 gactgtgact tcccccgcag ggacttcggc cgacgacggg caggagctga cggggccgtt
     1801 cggcgacgac acacctcagg tcgatgcacc ccaggccgat acaccccaga tcgatacaac
     1861 gcagatggat acccccgacg tcgatacccc ccacgtcgat acacctgaga tcagcgagga
     1921 agtcgagaac gccgatcggg acgcggaggt ggcttcggcg cagccggccg agcccgcgga
     1981 cccggttgat gagctccgat ccgcgctggc caccgctccc ggtgagtggt acgtggtgca
     2041 ctcctacgcc ggctacgaga acaaggtgaa ggccaacctg gaaacccgga tccagacgtt
     2101 ggacgtcgag gaatacatct tccaggtgga agtgcccacc gaagaggtca ccgagatcaa
     2161 gaacggacag cgcaagcagg tgcagcgcaa ggtgctgccc ggttacatcc tggtccgaat
     2221 ggatctcaac gacgcgtcgt ggagcgccgt gcgcaacacg ccaggcgtca ccggtttcgt
     2281 cggagccacc tcgcgacctt cgccgttaac cctcgacgag gtgctgaagt tcctcgcgcc
     2341 gcgggtggcg cagccgaagg tgcccgttgg cgccggcaaa catgtcggcg gtgtaggtgg
     2401 ggcgaagccc acgatcgagg tcgacttcga ggtgggcgag tcggtcaccg tcatggacgg
     2461 accattcgcg acgttgcctg ccacgatcaa cgaggtcaac gtcgacgccc agaaactcaa
     2521 ggtgctggtg tcgatcttcg gtcgggagac acccgtcgaa ctctcgttca gccaggttgc
     2581 caagatctga ccggcgcacc accggtggta ttcacctaca ggcgaggaag gaatcatgcc
     2641 ccccaagaga cggaagaggc ttgcggccac cgtgaagctc gcactggagg cgggtaccgc
     2701 aaacccggct tcggtcgggc aggcgctggg cccgcacggt ctgaacatca tggagttctg
     2761 caaggcctac aacgctgcga cgcagaacaa tcgcggcgag gtcgtgcctg ccgtgatctc
     2821 ggtctacgag gaccgctcgt tcgacttcgt gctcaagacg ccgccggcat cggtgctgtt
     2881 gctcaaggcg gccggaatag ccaagggctc ggctgagccg cacaaggcca aggtcgccaa
     2941 gatcggtcgg gaacagctgc gggccatcgc cgaacgcaag cgcgaagacc tcaacgccaa
     3001 cgacatcgac gcagccatca agatcattgc tggcacggcc cgatcgatgg gcatcgcggt
     3061 gg
//
LOCUS       DASVXZ010000991         4103 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1523221, whole genome shotgun sequence.
ACCESSION   DASVXZ010000991 DASVXZ010000000
VERSION     DASVXZ010000991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4103
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523221"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..786
                     /locus_tag="VF788_20780"
     CDS             151..786
                     /locus_tag="VF788_20780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018331970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HEX8936566.1"
                     /translation="MTHLVSEDRVFDPLESGRHSSVDRIADPGPLGLSAFATTTFVLS
                     CVNAGLAPKSVEPIVLPVALFYGGLVQLLAGMWEFRKSNTFGAVAFSSYGAFWLSFVG
                     YIKFITPGLSTADAGAATGLFLLAWTIFTAYMTVASVRVSGTVAAVFVTLLATFILLT
                     TGAYTGASEISQLGGYLGLLTAVLAWYASFTGITNVTFATTVRTRFSHTTR"
     gene            complement(1191..3353)
                     /locus_tag="VF788_20785"
     CDS             complement(1191..3353)
                     /locus_tag="VF788_20785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013673826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX8936567.1"
                     /translation="MTLAPELGSNELKIVRGACPHDCPDTCAMLYHVRDGKLVDVQGD
                     PEHPMTRGGLCVKLKNFPEHHYQADRLLHPMRRTGPKGSGQFERISWDDALAEIKARW
                     IEIIDEYGAQAIMPHAYLGHQGVLNGLTSGDAFFNRLGSSVAEKTYCESGSSTAWIMT
                     VGATGGLDVESMAYSKYIIVWGMNMTSTNLHAWPFVLEARKNGAKVVVIDPVRTRTAR
                     QADWHIPVRPGTDGALAMGLIHEIITRDLVDFDYVDRYTIGYDELAERAALYPPERVA
                     EITGIPAADIRTLAREYATTQPAAIRQGVAIERSRGGGQAIRAITCLPALVGAWRHVG
                     GGTVEMPIWEFPTRFDKICKPEWIPVGTRVINELDLGAALTGEMALDPPLKSLFVYNS
                     NPVSQGPAQAKLVRGLLREDLFTVVSEHFITDTARYADLVLPATMQAEQLDIMVTWGH
                     LYISLNQPAILAPGECVPNVELFRRLAKTMGFDDDYWDRTDKEMLIDFHDWDAPAMDG
                     ITWDKLTEHGYMRINVGAPDVRAPHAEGNFPTPSGKCEFKSSLADGGNFVVPVWRSMY
                     DAMQPGEPIDPLPDYVPPFESPDSNPELAKRYPLSIVSPKPHAFLNSQYGNAQDKQRV
                     QGEQRIFLHPDDAAERGIATGELVQVFNDRGMFQGPAQLDDSLMPGLVMANVGHWSSS
                     SPGDSSVNSITLDQHCTLGNAGVYSDNLVEVTKLAPEL"
     gene            3845..>4103
                     /locus_tag="VF788_20790"
     CDS             3845..>4103
                     /locus_tag="VF788_20790"
                     /inference="COORDINATES: protein motif:HMM:NF015418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936568.1"
                     /translation="MAVMWTRVDPPTDDMPAAQEDAVGADPVAEAFRAWMRTCTRSGS
                     VAAINTQVVTVATARGRVTAEPARALWSVPAYRAAAMDGIAV"
BASE COUNT          698 a         1214 c         1374 g          817 t
ORIGIN      
        1 agctcgggat tttcatggtc tgaaggtgac ggaagtcccg ctactgatgt cagcatcccg
       61 cagctgttta cgtggtacgt gacagtcaac gtgcgccatc atcggcccat gccttagtat
      121 gcaccaatcc ctacttgata ggagcacttc gtgacccatt tggtctccga ggaccgtgtg
      181 ttcgatccgc tggaaagcgg ccggcacagt tcggttgacc gtattgctga ccccgggccg
      241 cttgggctga gcgcatttgc gacgaccaca tttgtgctca gttgtgtcaa tgcagggctg
      301 gcgccgaagt ctgtagagcc gatagtgctg ccggtggcgc tgttctacgg cgggctggtt
      361 caactgttag ccgggatgtg ggagtttcgc aaatccaaca ccttcggcgc tgtggcgttt
      421 tcttcatacg gggcgttctg gctgtccttc gtcggctaca ttaaattcat cacacccggc
      481 ttgtccacgg cggacgccgg agcggcgaca gggttgttcc tgctggcctg gacaatcttc
      541 accgcttaca tgacggttgc gtccgtccgg gtatccggga cggtggccgc agtattcgtt
      601 accttgttag cgaccttcat tctgctgacc accggcgcct atactggcgc atccgagatc
      661 agtcaactcg gcggctacct cggcctcctc accgcggtac tagcctggta tgcatccttc
      721 accggaatca ctaacgtcac cttcgccaca accgtgcgaa ccaggttttc ccacacaacc
      781 agataaggaa atgacgccgt tacacctgac tgcgttgcgt atggacaccg cactgacacc
      841 ggtttccctg gccggaggcg cgtgacggaa cgttgatcca gtcatcgggt ggggccccac
      901 cctcggatag gtgatcgtcc aggttttcaa tggcttgtag gaggccgtgc acggcgggcg
      961 gtatggcatc cggatggctc cggtccactc tcactggaag atcgaatccc ttgcaagatc
     1021 gcattcggat cttcggccgt cacgtgtctc ctatccccga tcgagtgggt gcggactggc
     1081 gaggatatcc ggctcctcac agcaaggatg ggagcggatg agggtgccgg ggtgacacat
     1141 cgggctggaa tgagcggtcg accgaagcca aggcgctgag ccgcgcggga tcagagctct
     1201 ggggcgagct tggtcacctc gacaaggttg tcggagtaca ccccggcgtt tccgagtgtg
     1261 cagtgctggt ccagagtgat cgagttgacc gagctgtcac ccgggctgga gctggaccag
     1321 tgcccgacgt tggccatgac caggccgggc atcagggagt cgtccagctg tgcagggccc
     1381 tggaacatgc cgcggtcgtt gaatacctgg accagctcgc cagtggcgat gccgcgctcg
     1441 gctgcgtcgt cggggtgcag gaagatgcgc tgctcaccct ggacgcgctg cttgtcctgc
     1501 gcgttgccgt actggctgtt gaggaacgcg tgcggcttgg gcgagacgat gctgagtggg
     1561 taacgcttgg cgagctccgg gttcgagtcg ggtgactcga acggggggac gtagtccggc
     1621 agtgggtcga tgggctcgcc gggctgcatg gcgtcgtaca tcgaccgcca caccgggacc
     1681 acgaagttgc caccgtcggc gaggctggat ttgaattcac acttgcctga tggggtcggg
     1741 aagttgccct cggcgtgcgg agcccggaca tcgggagcgc cgacgttgat ccgcatatag
     1801 ccgtgttctg tgagcttgtc ccaggtgatg ccgtccatgg ctggggcgtc ccagtcgtgg
     1861 aaatcaatca acatctcctt atcggtgcgg tcccagtagt cgtcgtcgaa acccatggtc
     1921 ttcgccagcc ggcggaacag ctccacgttg ggcacacact cgcccggcgc gaggatcgcc
     1981 ggctgattga gcgagatgta cagatgcccc caggtgacca tgatgtcgag ctgctcggcc
     2041 tgcatggtcg ccggcaggac gaggtctgcg tagcgggcgg tgtcggtgat gaagtgctcg
     2101 ctgaccacgg tgaacaggtc ctcgcgcagc aggccgcgga cgagtttggc ctgtgccggg
     2161 ccctgtgaga ctgggttgga gttgtagacg aacagcgatt tgagcggcgg gtcgagcgcc
     2221 atctcgccgg tgagggccgc acctagatcg agctcgttga tcactcgagt gcccacggga
     2281 atccactcgg gcttgcagat cttgtcgaag cgggtgggga attcccagat gggcatctcg
     2341 accgtgccgc cgccgacatg acgccaggcg ccgaccagcg ccggtaggca cgtgatggcg
     2401 cgaatcgcct gtccgccgcc cctgctgcgc tcgatcgcca cgccctggcg gatcgcggcc
     2461 ggctgggtag tggcgtactc acgtgccagc gtgcggatgt ccgcggccgg gatgccggtg
     2521 atctcggcga cgcgctcggg cgggtacagg gcggcccgct cagctagctc gtcgtagccg
     2581 atggtgtatc tgtcgacgta gtcgaaatcc accagatccc gggtgatgat ctcgtggatc
     2641 aggcccatgg ccagcgcacc gtcggtgccc ggcctgaccg ggatgtgcca gtcggcctgc
     2701 cgggcggtgc gggtgcgtac cgggtcgatg acgacgacct tcgcgccatt tttccgggcc
     2761 tccagcacga acggccatgc gtgcaggttc gtgctggtca tgttcatgcc ccacacgatg
     2821 atgtatttcg agtaggccat gctctcgaca tcgagcccac cggtggcgcc gactgtcatg
     2881 atccaagctg tggatgagcc ggactcacag taggtctttt ccgccacgct ggagcccaga
     2941 cggttgaaga aggcgtcacc tgaggtcagc ccgttgagca cgccctggtg gcccaggtag
     3001 gcgtgcggca tgatcgcctg tgcgccgtac tcgtcgataa tctcgatcca tcgagctttg
     3061 atctcagcga gcgcgtcgtc ccaggaaatg cgctcgaact gccccgaccc tttgggtccg
     3121 gtgcggcgca tcgggtgcag caggcggtcg gcctggtagt ggtgctcggg gaagttcttg
     3181 agcttgacgc acaggccgcc acgcgtcatc gggtgctccg gatccccttg gacgtcgacg
     3241 agcttgccgt cgcgcacgtg gtaaagcatc gcgcaggtgt ccgggcaatc gtgcgggcac
     3301 gcaccgcgga cgatcttcag ctcattcgaa ccgagttctg gtgcgagcgt catcgccgaa
     3361 accccttccc gggcgggacg atatattcaa cggtccgcgt agcggaaacg gcgcctcaag
     3421 ttaggcaagc gcgagttacg gatgtgtgac ttccaggtga aggagtgtaa atgtccagaa
     3481 attcgccaga ttccgggcat gcgacctccc cgtgaatgga cgtgcgtcgg gaaactgctc
     3541 ggtgccgaac ctgtgtcacc cggtgaatcc gcagatccgt ggtggtatgt ttgagtcgcc
     3601 ggagggcaag cgaacccgca aatgcggatg ttccgcaggt tcgtcaacgc agatacgtgt
     3661 ggtgtcggtt gaggtatcct ccatgtctgg gtagcggcat tcggagtcat tcgaataccc
     3721 gatcgcgaaa gagtgaagat gacgaccacg agcgccgagt gctccctttc tgcaacgtcc
     3781 actgatgact acgagccgtt caagaagctg ctggtcacca gcggctgacc tggaggtgca
     3841 ccgaatggca gtgatgtgga cgcgagtcga cccgccgacc gacgacatgc cggcggctca
     3901 ggaggacgcg gtcggcgcgg acccggtggc cgaggccttc cgggcgtgga tgcggacgtg
     3961 cacgcgatcg gggtcggtag ctgcgattaa tacccaggtt gtcacagtcg ccacggcccg
     4021 cggacgggtc acggccgaac cggcgcgggc gctgtggtcg gtgcccgcct accgggccgc
     4081 ggccatggat ggcatcgcgg tgc
//
LOCUS       DASVXZ010000992         5171 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1431389, whole genome shotgun sequence.
ACCESSION   DASVXZ010000992 DASVXZ010000000
VERSION     DASVXZ010000992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 5171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5171
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1431389"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..511)
                     /locus_tag="VF788_20795"
     CDS             complement(<1..511)
                     /locus_tag="VF788_20795"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013675440.1"
                     /note="mycothiol biosynthesis; catalyzes the ligation of
                     cysteine to a mycothiol precursor; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--1-D-myo-inosityl
                     2-amino-2-deoxy-alpha-D-glucopyranoside ligase"
                     /protein_id="HEX8936569.1"
                     /translation="MQPWTSTAVPQLPGQGPPLRLHDTAAGQVRPTAPGPTARMYVCG
                     ITPYDATHLGHAATYLAFDLVHRYWRDVGHQVHYVQNVTDVDDPLLERAIRDQDDWVV
                     LGMRETALFREDMESLHVLPPRDFVGAVEAIGEIVEVVGKLHACGAAYRIDDPEHPDI
                     YFDHQAAAHF"
     gene            1095..1361
                     /locus_tag="VF788_20800"
     CDS             1095..1361
                     /locus_tag="VF788_20800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936570.1"
                     /translation="MSEALSFAEIDGQQVELLPARIVLSLFASRAPGTATPGSNGAHG
                     SGAGGGKGGLGGMALAGLSFNWMSGPGASAGTATGGTGGAGGST"
     gene            complement(1458..3416)
                     /locus_tag="VF788_20805"
     CDS             complement(1458..3416)
                     /locus_tag="VF788_20805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX8936571.1"
                     /translation="MTSASRYSYGPWRGGPDPLAPPADLTAALDQIGRDVMDGASPRA
                     AMRELLRRGIPGTRGMDELARQVWQRRAEITRRHRLDGTLHQVRELLDKALAAERREL
                     FPDPDDHARFREARLDALPPDTARAVTELADYDWRSAEAAQAYQDIRDLLGQQLLEQR
                     FEGMKQALQSSSPEDIERIRQMLSDLNDLLAAHARGDADTPQRFQEFMRKHGDFFPEQ
                     PRNVEELIDALAARAAAAQRMINSMSSQQRAELAELIQQAFGDPRLAAQLATLDAQLQ
                     ALRPGEDWQGLERFRGQDPLGLGEGAQAMADLAELDALSEQLAQVYAGARTEDVDLDA
                     LDRQLGEEARIDARRLAELERELERHGFFERAPDGSLRLSPKAMRRLGSHALADVVQV
                     LRSRRGARELRRAGAAGEPNGGSRPWEFGDSEPWEVPRTVRNSVLRRAASRGGEPLLV
                     VEDVEVADTEQRARAAVALCVDTSWSMVQDGHWVPMKRTALALHHLVRTRFRSDALEL
                     ITFGRHAQRVDIAELTGLAGVWEQGTNLHHALLLAGRHLRRHPDAAQVLLVVTDGEPT
                     AHLEPAGEAVFSYPPQPQTLALTVREMDRLARNGTAVSIVMLGHDPRLAVFVHALARR
                     CGGRVLDPGVDGLGAAVVGDYLRHRKRP"
     gene            complement(3413..4849)
                     /locus_tag="VF788_20810"
     CDS             complement(3413..4849)
                     /locus_tag="VF788_20810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEX8936572.1"
                     /translation="MQPAEPPIDLPRTVGALRVSGHIERDVKSEMRANLLNALRRGRD
                     PWPGIVGFSDSVLPQLERALLAGHDVVLLGERGQGKTRLLRTLVGLLDEWTPVIEGAE
                     LAEHPCQPITPGSIRRAAVLGDDLPVTWLHRSMRYTEKLATPDTSVGDLVGDVDPVKV
                     AQGRSLGDPETIHFGLVPRAHRGIVAINELPDLAERIQVSLLNVMEERDIQVRGYTLR
                     LPLDVLVVASANPEDYTNRGRIITPLKDRFGAEIRTHYPREMAAEVALVAQEADLSSI
                     GAEVGEPLLEVLARFSRHLRGSAAIDQRSGVSARFAVAAAETVAAAAVRRAALTGEDH
                     AVARPIDLEAVPAVLRGKLEFESGYDQQSTERDEQGEVLTHLLRRAVADTARARLRGL
                     DLVPLAAAVSGGRRVATGERVPAGEVLAALPELPVLHDVATRLGAAPGGAPGPIAAAV
                     ELALESLYLTRKLGKDVEDGRTVYGSRE"
BASE COUNT          818 a         1775 c         1726 g          852 t
ORIGIN      
        1 cgaagtgcgc ggccgcctgg tggtcgaagt agatgtccgg gtgctctgga tcgtcgatcc
       61 ggtaggccgc accgcacgcg tgcagcttgc cgaccacctc gacgatttca ccgatcgctt
      121 cgacggcacc gacgaagtcc cgagggggca gaacatgcag tgattccatg tcctcgcgaa
      181 acagcgcggt ctcccgcatt cccagtacta cccagtcatc ctgatcacga atcgcccgtt
      241 ctagcaacgg atcgtcgacg tcggtgacgt tctgtacgta gtgcacctgg tggccgacgt
      301 cgcgccagta tcgatgtacc aggtcaaagg ccaggtaggt ggccgcgtgc ccgaggtggg
      361 tggcgtcgta aggggtgatc ccgcagacat acatccgcgc ggtggggccg ggcgcggtcg
      421 gccggacctg cccggctgcg gtgtcatgca ggcgcagcgg cggcccctga ccgggtaact
      481 gcggtaccgc tgtcgacgtc cagggctgca tggattcgac actacgtcac cgcgtgacgc
      541 tggccgggag ctcgacccag ggcaggggcg ctctcccagc aacaccacgt cctggccagg
      601 tagcgaggat cgctccagct gcggaagcac ggtgtcggcg aacctgacga tgccggccac
      661 ggcaccacca gatggtccac gattctggcc atactcttct tctctatttc cgcgtggccg
      721 atcagaatct tacacaatcg accgaatcgc ccattccgga cgaacctttc attgcacatt
      781 gaggggttta cctgttgtcc cgggcggccc tgtactggct gtgcgagtcc gcattcacac
      841 tgtagcgaaa agtggtagca atatgaacat aaaacccgca agcgctcacc cttcctcacg
      901 gtaatctagt ccattcgagt gttcttatga tgcattgttc ttgcgctgcg tcataattgc
      961 tgcacgaggc tcacatctgt cgatgcgtca ccgaaagctg tgttggtgat cgattgcata
     1021 gagccagctc aatctgccga cgcaccgagg ttctgccctc cgtttccagc ggcccctagc
     1081 cctaggagtt gtcaatgtct gaggcactca gctttgccga gattgacggt cagcaggtgg
     1141 agttgctgcc cgcgcgtatt gtcctgtcgc tgttcgcgag ccgcgccccc ggcactgcca
     1201 ctcctgggtc caacggcgcc cacggcagcg gagccggcgg tggaaagggt ggcctcggtg
     1261 ggatggcctt ggccggccta tcctttaact ggatgagcgg cccgggcgcc tccgcgggta
     1321 ccgccaccgg cggcaccggc ggtgccgggg gcagcacctg agcccgcagc agctgagtcc
     1381 tacttgacac cttgccattc gctgggggac ggcacaggac aatcagcgta tgaggtgctg
     1441 gggacagccg atgacggtta ggggcgcttt ctgtggcgga ggtagtcgcc gaccaccgcg
     1501 gcgcctaggc cgtccacccc ggggtcgagt acgcggccgc cgcagcgccg ggcgagtgcg
     1561 tgcacgaata ctgccagccg gggatcgtgg cccagcatca cgatactcac cgctgtgccg
     1621 ttgcgcgcca gcctgtccat ctcgcgcacg gtcagcgcca gcgtctgggg ctgcggcggg
     1681 tagctgaaga ccgcctcgcc ggcgggttcc aggtgcgcgg tcggctcgcc atcggtgacc
     1741 accagaagca cctgggcagc gtcgggatgg cgacgcaggt gccgcccggc cagtagcagc
     1801 gcgtggtgca ggttggtgcc ctgctcccac actccggcca gcccggtgag ctccgcgatg
     1861 tccacgcgtt gggcatggcg cccgaaggtg atgagttcca gtgcgtcgga gcggaaccgg
     1921 gttctgacca ggtggtgcag cgccagggcg gtgcgcttca tcggcaccca gtggccgtcc
     1981 tgcaccatcg accacgaggt gtcgacgcac aatgccacgg ccgcccgtgc gcgttgctca
     2041 gtgtccgcga cctcgacgtc ttcgacgacc agcagtggtt ccccaccccg cgaggcggcg
     2101 cggcgcagca cactattgcg cacggtgcga gggacctccc acggctcgga gtcgccgaac
     2161 tcccagggcc ggctgccccc gttgggttct cctgctgcgc cggcccggcg cagctcacgc
     2221 gcgccgcggc ggctgcgcag cacctggacc acgtcggcca gtgcgtggga accgagccgg
     2281 cgcatcgcct tgggcgacag gcgcaacgac ccgtcggggg cgcgctcgaa gaagccgtga
     2341 cgctccagct cacgttccag ctcggcgagc cgccgggcgt cgatcctggc ttcctcgccc
     2401 agttgacggt ccaatgcgtc gaggtcgaca tcctcggtgc gcgctccggc atagacctgg
     2461 gcgagttgct cggacagcgc atcgagctcg gcgaggtcgg ccatcgcctg cgcgccctcg
     2521 cccaggccga gcgggtcctg accgcggaag cgttccaagc cctgccaatc ctcgccgggc
     2581 cgcagcgcct gcagctgggc gtccagcgtc gccaactgcg ccgccagccg cgggtcaccg
     2641 aaagcctgct ggatgagctc ggccagctcg gcgcgttgct gggagctcat cgagttgatc
     2701 atccgttgcg ccgcggcggc cctggcggcc agcgcgtcga tcaattcctc gacattgcgg
     2761 ggctgctcgg ggaagaagtc cccgtgcttg cgcatgaact cctggaaccg ttgaggtgtg
     2821 tccgcgtcgc ctcgggcgtg cgcggcgagc agatcattaa gatccgagag catctgccga
     2881 atccgctcga tgtcctcggg agagctggac tggagcgcct gcttcatccc ttcgaagcgc
     2941 tgttcgagca gttgttggcc gagtaaatcg cggatgtcct ggtaggcctg cgcggcctcg
     3001 gcggaacgcc agtcatagtc ggctagctcc gtgacggcgc gggcggtgtc cgggggcagc
     3061 gcgtccagcc gagcttcccg gaagcgggcg tggtcatcgg ggtccggaaa tagctcccgc
     3121 cgctccgcgg caagggcctt gtcgaggagc tcgcggacct ggtgcagggt gccgtcgagc
     3181 cggtgccgac gggtgatctc ggcccggcgc tgccagacct ggcgggccaa ctcgtccatc
     3241 ccccgtgtgc cggggattcc acggcgcagc agctcccgca tcgctgcgcg cggagatgcg
     3301 ccgtccatca cgtcgcgacc gatctgatcc agcgccgcgg tgaggtcggc gggtggggcc
     3361 agcgggtccg ggcccccgcg ccagggcccg tagctgtacc ggctcgccga agtcattccc
     3421 gggatccgta caccgtgcgg ccgtcctcga catccttgcc gagcttgcgg gtgaggtaca
     3481 gggactcgag cgcgagctcg acagcggcgg cgatcgggcc gggcgctccg ccgggagcag
     3541 cgccgagccg ggtggcgaca tcgtgcagca ccggcagctc aggtagtgcg gccagtacct
     3601 cgccagccgg tacccgctct ccggttgcta cccggcggcc cccggagacc gctgcggcca
     3661 gcggcacgag atccaaaccc cgtagccgcg cccgggctgt gtcggccacc gcccggcgta
     3721 gcaggtgagt cagcacctcg ccctgctcat cgcgctcagt ggactgttgg tcgtagccgg
     3781 actcgaactc caacttgccg cgcagcacgg ccggtaccgc ttccaggtcg atgggacggg
     3841 ccacggcgtg atcctcaccg gtcagcgcgg ctcgccgcac tgctgcggct gcgacggtct
     3901 ccgcggcggc caccgcgaac cgcgctgaca cgccggaacg ttggtcgatg gccgcgctgc
     3961 cacgtaggtg ccgggagaac cgagccagca cctccagcag cggctccccc acctccgcgc
     4021 cgatactgct caggtcggcc tcctgggcga ccagggcaac ctccgcggcc atctcacgcg
     4081 ggtagtgggt gcggatctca gcgccgaagc ggtccttgag cggggtgatt atcctgccgc
     4141 ggttggtgta gtcctcggga ttggcgctgg ctactacgag cacgtccagc ggcaaccgca
     4201 gggtgtagcc gcgaacctgg atgtcccgct cctccatcac gttgagcagc gaaacctgga
     4261 tccgctcggc caggtcaggg agctcgttga tcgcgacgat gccgcggtgg gcccggggaa
     4321 ccagcccgaa gtggatcgtc tccggatcgc ccaggctgcg gccttgtgcg accttcaccg
     4381 gatcgacatc acccaccagg tcgccaactg aggtgtccgg agtggcgagc ttctcggtgt
     4441 accgcattga gcggtgcagc caagtcaccg gcagatcgtc accaagcacg gcggcgcggc
     4501 ggatcgagcc gggggtgatc ggctggcaag ggtgttcggc cagctcagcc ccctcgatga
     4561 ccggggtcca ctcatcgagc agcccgacca gtgtgcgtaa caaccgagtc ttgccctggc
     4621 cgcgctcacc gagtagcacc acgtcgtggc cggccagcaa cgctcgctcc agctgcggca
     4681 acaccgaatc ggagaacccg acgatgcccg gccatggatc ccggcccctg cgcagtgcgt
     4741 tgagcaggtt ggcgcgcatc tcactcttga catcacgctc aatgtgcccg gagacgcgca
     4801 acgcgcccac tgtgcgcggc agatcaatcg gaggctcagc aggttggatg gatccacgct
     4861 gacggtgaaa ggtcacggtt ccacgctacg cacgcccgtc tcggcgagca tcccggtcgc
     4921 caactacaac atctcaacaa ggttcgcaat gcggggctcg aacacggcca ccaacaccgg
     4981 cttgtcggct ccagccccca ccaggacccg atgacggtgc aggtacgccg aaaccccacg
     5041 gcctggtaca ggccgtgaag tttcatccgt cgaccttttc aggaccgcca gggacacgcg
     5101 atggtcgggc cgttgatcaa gccgccctga ccgcccgtgc cgccgcacac ggccggacca
     5161 ccgaccaccc c
//
LOCUS       DASVXZ010000993         6043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1523491, whole genome shotgun sequence.
ACCESSION   DASVXZ010000993 DASVXZ010000000
VERSION     DASVXZ010000993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6043
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523491"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VF788_20815"
     CDS             complement(<1..463)
                     /locus_tag="VF788_20815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936573.1"
                     /translation="MSTGSKGTDSFSLDEWFVVALARTIRDREVTFHGFGSPCAQVAM
                     HVAKRTHARGMLLVEGATYACNPDPPFIPPTGNDASLQRGAAYRMRFEEFFDTAIRGD
                     VDRMFLSGGQIDGYGNTNVTAIGAGDYPVTLPKVKLGGGGGGCNLAATIGHL"
     gene            complement(460..1380)
                     /locus_tag="VF788_20820"
     CDS             complement(460..1380)
                     /locus_tag="VF788_20820"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEX8936574.1"
                     /translation="MGFHLDPDKRMPLDRAATLVADGTMVALGGGLSARLPMALVREL
                     IRQGRRELHVVGSAHGIDVDLLVAAGVIAVCEESYVGFEQDFGLAPAFRRVAERGTIE
                     VRESCCDTILMQLRAAEFGLPFLPVRGVRGSDIPRLHPEYREVRCPFTNETLVAVPPL
                     RPDVVLLHALLADRHGNLHLEQPYVLDERFAAASRNVVATAERIVSTEDVAAAGITIP
                     GHLVAAVSEVPFGAHPSSCYPAYAYDRPHLADYVQAAAAGDDELAGYLDRFVTGVPDE
                     ASYRKVVGEERLTALGRWSESTEVWKGLFR"
     gene            complement(1405..2178)
                     /locus_tag="VF788_20825"
     CDS             complement(1405..2178)
                     /locus_tag="VF788_20825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX8936575.1"
                     /translation="MTGQLEGRVALITGAGSGIGRAAAQRFAAEGCAVAVVDLAAPAA
                     QETVDKIVADGGRAIACPANVTVDTEVRSAVERTVEAFGGLNVVYNNAGVNSSGSVAD
                     ATEDDWDRCMGVNVKGTFLCSRAAIPYLAASESAAIVNQASVAALVGIPNFAAYCAAK
                     GAVVALTRSMAVDLAPRGIRVNVICPGTVFTPLMEPLLRARGNGDLEAGLAKTVVKYP
                     IGRLGTPEEIASAALFLVSDQASFLTGSVLTADGGMTAQ"
     gene            complement(2193..2912)
                     /locus_tag="VF788_20830"
     CDS             complement(2193..2912)
                     /locus_tag="VF788_20830"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX8936576.1"
                     /translation="MSQRVAVVTGGASGIGRATVARLLDDGFGLAVLDLSPDPIPSVL
                     TIKVDVSDATAVERAMGDVLAEFGRVDVLVNNAGISGSPQATTCHETPVAEWDRVFAV
                     NVRGPFLCTRALLPIMINQGTGHVITVASGAGMVAFPGRCAYTASKGAALQFAKSIAV
                     DYAAGGIRSNAVCPGMVQTPMTQWRLDIPELRAAVEARIPLGRVARPDEIADAIAVLA
                     SHRLSYVTGAAFLIDGGWTAL"
     gene            complement(2909..3499)
                     /locus_tag="VF788_20835"
     CDS             complement(2909..3499)
                     /locus_tag="VF788_20835"
                     /inference="COORDINATES: protein motif:HMM:NF014860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936577.1"
                     /translation="MVQQVVVSGGGTAGMSAASAARRADPACDIVVLETGHAAFVPLG
                     PAGNKTGRVAGPVAAGGWARFRRVVGTAVVKVFDPGVARTGLPLAQAQQEVGPDVIAT
                     GIVGRSRAKYYPGAESVTVRLVHEPAGRLLGAQMVSTADVAKRIDVVAAALRAGFDVD
                     DVLPLDLSYAPPYAPVYEPLLLAAQAAATHSSRVAV"
     gene            3638..4423
                     /locus_tag="VF788_20840"
     CDS             3638..4423
                     /locus_tag="VF788_20840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HEX8936578.1"
                     /translation="MWNSPDFLDLSDRAGKPRSRGLTHVLDKGTTITALDALLIQAGH
                     LVDIIKIGWGIAYIDPMVKDRVALCRAAGVVVSLGGTLLEVAVAQGRLSEFRRWAADI
                     GVNALEISNGLGALTRERKTTLIRELSNEFIVLAETGMKNSSLPVMADAWLAEMEADL
                     AAGARWLIAEGRESGTVGLYESDGTVRAALVGTIAAQLPLERVIFEAPRPAQQSWMVR
                     HLGADVNVGNVPPEEVLPLETLRLGLRADTARLPDHGPTAAPQ"
     gene            4474..5346
                     /locus_tag="VF788_20845"
     CDS             4474..5346
                     /locus_tag="VF788_20845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020660449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936579.1"
                     /translation="MQEVDVSLTEHALAAFLLGREVYRRSEYLVLRNMGQTALVAVRK
                     QSEVPLFSPVVEARVLAGPDEVVSIEAPEVDVGNATALAQVALAYARKGALAYVVTGR
                     YEHVNFIWQPHPVQIRVTEVVPPAPPKLLAMAQQVVAYDEDLPPIDLVLEAVDIPELA
                     ASHPAPSYLLPCRGAGTELGAPVSYLDTRPANRADWLMIGCERSLQFHRHFYGDEPPR
                     LELCPRRRTVSPHELTLAKCCLIERGVEYEGSRAVVPWGSNLDEIRAALRWLTGIGPI
                     PEVDASKSVEVGSR"
     gene            5356..>6043
                     /locus_tag="VF788_20850"
     CDS             5356..>6043
                     /locus_tag="VF788_20850"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEX8936580.1"
                     /translation="MGAHLVDSAVYGHLWATPELRRLFDDHGRFQSWLEILAALAEAQ
                     GDLGMVPADAARAIREHADITLLDLDLIGAATRSTGHSTLGLIQCLTEVLPPHAREWV
                     YYGATVQDLSDTWTAVITRRVGDVLERDLRRVEAATLALARKYRNEIMCGRTHGQPGL
                     PITFGFKAAVWASELRRHRARLAQGRRRWEVIQLGGALGTMEFWGAAALPLLDAFARR
                     LGLGVPDIAWI"
BASE COUNT         1071 a         2012 c         1912 g         1048 t
ORIGIN      
        1 tgaggtggcc gatcgtggcg gcgaggttgc atcctccacc cccgccgccg agcttcacct
       61 tcggcaaggt gaccgggtag tcaccggcgc cgatggcagt gacgttggtg ttgccgtagc
      121 catcgatctg acctccggac aggaacatcc gatcgacgtc tccccggatg gccgtgtcga
      181 agaactcctc aaaccgcatc cgataagccg cgccccgttg caggctcgca tcgttgccgg
      241 tgggtgggat aaacggcggg tcggggttgc aggcgtaggt tgctccctcc accaataaca
      301 tgccccgtgc atgggtgcgc ttggcgacat gcatggcgac ttgcgcgcag gggctgccga
      361 agccgtgaaa cgtgacttcc cggtcccgga tcgtgcgggc gagtgcgacc acgaaccact
      421 cgtcaaggga gaagctgtca gtgcccttgc ttcccgtgct cacctaaaca ggcctttcca
      481 tacctcggtg gactctgacc agcggcccag cgcggtcagt cgctcctcgc cgacgacctt
      541 gcggtaactg gcttcgtcgg gcacgccggt gacgaaccga tccaggtaac cggccagctc
      601 gtcatctccg gccgccgcag cttggacata gtcggctaga tgcggccggt cataggcgta
      661 cgccgggtag caagacgacg ggtgcgcacc aaaaggcacc tcactcaccg ccgccaccag
      721 gtggcccgga atggtgatcc cagcggcggc aacgtcctcg gtgctgacaa ttcgttccgc
      781 ggtcgctacc acattccgcg aagcagcggc gaagcgctcg tcgagcacgt aaggctgctc
      841 tagatgcagg tttccgtggc ggtcggcaag gagagcgtgg agcaggacga cgtctggccg
      901 caacggaggt acggcgacca gagtctcgtt cgtaaacggg cagcgcacct cgcggtactc
      961 ggggtgcagc cgagggatgt cggaccctcg aactccccgc accggcagga aaggcagtcc
     1021 aaattcggct gcccgcaact gcatgaggat ggtgtcgcag cagctttccc ggacttctat
     1081 ggtgccgcgc tcggcaactc gtcggaacgc cggcgccaga ccgaaatcct gctcgaaacc
     1141 gacatagctc tcctcgcaca ccgcgatcac cccggcggcc accagcaggt ctacatcaat
     1201 tccgtgagcc gagcccacga catgaagctc tcgccgaccc tgccggatca gttcccggac
     1261 cagcgccatc ggcagccgag cggacaaccc tccgcccaac gcgaccatgg ttccgtcggc
     1321 gaccagcgtg gccgctcggt ctagcggcat tcgtttgtcg ggatctagat ggaaccccac
     1381 ggcagacctc tcactaccgg cacgtcattg ggccgtcatg ccgccatcgg cggtcaggac
     1441 cgacccggtt aagaaagaag cttggtcgct gaccagaaat agcgcggccg aagcaatttc
     1501 ctccggcgta ccaagccgac cgatcggata cttgaccacc gtcttggcca ggcccgcctc
     1561 gagatcgccg ttcccgcgag cccgaagcag tggttccatc agcggggtga acacggtacc
     1621 ggggcaaatc acgttcactc taattccgcg cggcgcaagg tcgaccgcca tcgagcgggt
     1681 cagcgccacg accgctccct tggcagcaca ataggcggcg aagttgggta tccctaccaa
     1741 cgccgcgact gaggcctggt tgacgatggc ggccgattcg cttgccgcga ggtacggaat
     1801 ggctgctctc gaacacagga atgtgccttt aacgttgact cccatgcagc ggtcccaatc
     1861 atcttcggtg gcatcggcga ccgagccgct gctgtttact ccggcgttgt tgtagacgac
     1921 gttaagaccc ccgaacgcct ccaccgtgcg ctccaccgct gaacgtacct cggtatccac
     1981 ggtgacattg gcggggcagg caatcgcccg accaccgtcg gcgacaattt tgtctactgt
     2041 ctcctgtgca gcgggcgccg caaggtcgac caccgccaca gcgcagccct cggccgcgaa
     2101 gcgttgggcc gctgctcggc cgatccccga gccggctccg gtgatcagcg caacccgtcc
     2161 ttcgagctgt ccggtcatgg gtttgttctc ctctacagag cggtccaacc gccgtcgatc
     2221 aggaacgcgg ccccggtgac gtagctcagc cggtgcgagg ccaagaccgc gatcgcatcg
     2281 gcgatctcat ccggtcgcgc gacccggccc agcgggatgc gggcctctac ggctgcgcga
     2341 agttcgggaa tgtccagacg ccactgggtc atcggtgtct gcaccatccc cggacagacg
     2401 gcattggacc ggattccccc agcggcatag tccaccgcga tcgacttggc gaactgcaat
     2461 gcggcaccct tcgaggcggt gtaggcgcaa cgaccgggaa atgcgaccat cccagcacct
     2521 gacgccaccg tgatgacgtg cccagtgccc tggttaatca ttatcggaag caaggcacgc
     2581 gtgcacagaa acggaccgcg aacatttacc gcaaacaccc gatcccattc cgcaactggt
     2641 gtctcgtggc acgtggtggc ttgtggcgag ccgctgatac cggcgttgtt caccagtacg
     2701 tcgacccgac cgaattcagc gagcacgtca cccatggcgc gctcaactgc ggttgcgtca
     2761 gacacgtcga ccttgatggt gagcaccgac ggaatagggt caggcgacag gtccagcaca
     2821 gcaagcccga aaccgtcatc cagcagccgg gcgaccgtcg cccgaccgat acccgaagcc
     2881 ccgccggtta ccactgccac ccgctggctc acaccgccac cctgctcgaa tgcgtcgccg
     2941 cggcctgcgc cgcaagcagc agcggctcgt acaccggcgc gtagggcggc gcgtaggaca
     3001 agtcgagtgg cagcacgtcg tcgacatcaa agccggctcg cagagcggcg gcgacgacgt
     3061 cgatccgctt cgcgacgtcg gctgtcgaga ccatctgtgc gccgagcagc cgaccagcgg
     3121 gttcatgcac cagccgcacg gtgactgact cagcgcctgg gtagtacttg gcccgggaac
     3181 ggccaacgat gccggtggcg atgacgtcgg ggccgacctc ctgttgcgcc tgcgccagcg
     3241 ggagcccggt gcgcgccaca ccaggatcga aaaccttgac cactgcggtc cccaccacgc
     3301 gacgaaaccg agcccacccg ccagccgcca cggggccggc cacccggccg gtcttgttcc
     3361 ctgctggacc cagcggcacg aatgcagcgt gcccggtctc caacacgaca atgtcgcatg
     3421 ccgggtcggc ccggcgagcc gcggatgctg cggacatccc agctgtgcca cccccgctga
     3481 caaccacctg ctggaccacg gacggcctcc ttgtccctag gtgctgacgc taagcagctg
     3541 tcctggcact tcccacgttc gggcgggacg aaggaacaca tagtgttggt actcgaagga
     3601 cacagaccag ccggcgtctg gatcgtatgg tcgcggcgtg tggaactccc cggacttcct
     3661 ggatctttcg gaccgtgctg gcaagccacg cagccgcgga ttgacccacg tattggataa
     3721 agggaccacc atcacggcat tggacgcact gctgatccaa gccggacacc tcgtcgacat
     3781 catcaagatt ggttggggta ttgcctacat cgacccgatg gtgaaggacc gggttgcgct
     3841 gtgccgtgcg gcaggggtgg tggtttcact cggcggcacg ttgctcgaag tggcggtcgc
     3901 tcagggccgg cttagcgagt ttcgccgttg ggctgccgac atcggagtga atgctcttga
     3961 gatctccaac ggcttgggag cgctaacccg ggagcgcaag accacgctca tccgtgagct
     4021 gtccaatgaa ttcattgtcc tggccgaaac tggcatgaaa aacagcagcc ttccagtgat
     4081 ggccgatgcc tggctcgcgg agatggaggc ggatctcgcc gccggcgctc gctggcttat
     4141 tgcggaaggt agggaaagcg ggacggtggg gctgtacgag tccgatggga ccgtgcgtgc
     4201 cgcgctggtg ggcacgatcg ctgcgcagct gcccctcgaa agggtcatct tcgaggcgcc
     4261 tcgacctgct cagcaatcgt ggatggtccg ccacctgggt gccgacgtca acgtaggcaa
     4321 cgttcctcct gaggaggtgc tgccgctgga gacgctgcga ctcggtttgc gggccgacac
     4381 cgcacggcta ccggaccacg gcccgacagc ggcaccacaa tgatctgcga ccctacgccg
     4441 aacaccatta ctcggcccta tcgtgggttg tccgtgcagg aagttgatgt ttcccttacc
     4501 gagcatgcgc tggctgcctt cctgttgggc cgcgaggttt accggcgcag cgagtacctc
     4561 gtgctgcgca acatgggaca gaccgcgctc gtagcggtgc ggaaacagtc cgaagtaccg
     4621 ctgttctcgc cggtagtcga ggctcgagtg ctcgccggcc ccgacgaggt ggtgtccatc
     4681 gaggcacccg aggtggacgt gggcaacgcc accgctttgg cccaggtggc gctcgcgtac
     4741 gcccggaaag gtgcgctggc ctacgtggtc accggccgct atgagcacgt caacttcatc
     4801 tggcaaccac acccggtgca gatccgggtg accgaggtgg tgccgcccgc cccgcccaag
     4861 cttctggcga tggctcagca ggtggtcgcc tacgacgagg atttgcctcc gatcgacctg
     4921 gtgcttgagg cggtagacat ccccgagctt gccgcttctc accccgcacc gagctacctg
     4981 ctgccatgcc gcggtgccgg caccgaactc ggtgcgccgg tgtcctacct ggacacgcgg
     5041 cccgccaacc gggccgactg gctgatgatt ggatgcgagc gctcgttgca gtttcaccgc
     5101 cacttctacg gcgacgagcc gccccgcctc gagctgtgcc cgcggcgccg aaccgtctcc
     5161 cctcacgagt tgacgctggc aaagtgctgt ctgatcgaac gcggcgtcga gtatgagggc
     5221 agtcgtgcag tcgtgccgtg gggctccaac ctcgacgaga tccgcgccgc cttgcgctgg
     5281 ctaaccggga taggtccgat acccgaggtc gacgccagca agtcggtcga agttgggagt
     5341 aggtgagcgg cgtcgatggg agctcacctt gtcgattccg ccgtctacgg tcacctgtgg
     5401 gccactcctg agctgcgccg actttttgat gaccacggac gtttccaatc ctggctggag
     5461 attctcgctg cgctcgctga ggcccaaggc gacctgggca tggttcccgc tgatgcggca
     5521 cgcgccatcc gagagcacgc ggacatcacc ctgcttgacc tggacctgat cggcgcagct
     5581 accaggtcga ccgggcactc caccctcggc ttgattcagt gcctgaccga agtgctgccg
     5641 ccgcacgccc gggagtgggt ctactacggc gccacagttc aagacctttc cgacacgtgg
     5701 accgcggtga tcacgcgacg cgtcggtgac gtgttggaac gtgacctgcg ccgggtggaa
     5761 gctgccacgc tcgcgctagc tcgcaagtat cgaaatgaga tcatgtgtgg gcgcactcac
     5821 gggcagcctg gcctaccgat caccttcggg tttaaggcag cagtgtgggc ctctgagcta
     5881 cgccgtcacc gggctcggct ggcccagggc cggcgtcgtt gggaggtcat tcaactcggt
     5941 ggcgcattgg gcaccatgga gttctggggt gccgcggcgt tgccactgct cgacgcgttc
     6001 gctcggcggc tcggtttagg tgttccggat atcgcctgga tca
//
LOCUS       DASVXZ010000994         7331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1329905, whole genome shotgun sequence.
ACCESSION   DASVXZ010000994 DASVXZ010000000
VERSION     DASVXZ010000994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 7331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7331
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329905"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..975)
                     /locus_tag="VF788_20855"
     CDS             complement(<1..975)
                     /locus_tag="VF788_20855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013676750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX8936581.1"
                     /translation="MNHHGRPEHTDRIRLGGSALPIISPARFYVCGITPYDVTHLGHA
                     STFVWADAAAAVCRLAGAETVTCRNVTDVDDVLTRAAEQRGRHYDEFALEQEFLFGRD
                     MAALRVRRPEHEPRARHHIGRVVQLASALLATDRAYHRDGAVYFRGTDVLAKTGLTLE
                     RATELAAEFGDRPDDPSRDDPFDVPVWRPSSDDQPGWPSPWGRGRPGWHAECAAIALG
                     VLGPAVDVLAGGADLTFPHHAYQAAMVEAATGVGPFARAQFPVGTVTVGGAKMAKSAG
                     NLVLVSDLLAHHPAAAVRLLLLNRPWQHTWEFRRADIDDQAKTLDRLYS"
     gene            1005..1436
                     /locus_tag="VF788_20860"
     CDS             1005..1436
                     /locus_tag="VF788_20860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005461294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HEX8936582.1"
                     /translation="MGGRDRDSAGRARNARPRDALGRPLPHGSPGVDRVPEDVVLPPD
                     EALRQAQRFIEDGYPFHAHEVFEGVWKATEGEHRELWKGLAQFAVGLTHLQRGNSKGA
                     VTLLRRAADRIAPHSAAAPSGLDAAALAGDARWLAERITRE"
     gene            1491..2561
                     /locus_tag="VF788_20865"
     CDS             1491..2561
                     /locus_tag="VF788_20865"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HEX8936583.1"
                     /translation="MRIGMLLSYSGGFAETVAELAEYEKAGLDIVFVPEAYGFDAVSQ
                     LGFIAARTERLEIASGILQIYTRTPALTAMTAAGLDYVSGGRFTLGIGASGPQVIEGF
                     HGLPYTDPLGRTRELVEICRKVWRRERLEYQGRHYQIPLPADRGSGSGKPLKLINHPV
                     RERIPIVIAAIGPKNVAMAAEIAEGWQPFFYLPERAAEVWGDSLAAGRAKRDQSLGEL
                     DVVVTASLAITDDKDIAAELLDAIRPMLALYIGGMGAKGRNFYHDLASRLGFEAQANA
                     VQDLYLAGKKDEAAAAVPDDLLRRSSLIGSASYVRERLEALRASGVTTLNVTPMAGSS
                     AERVRLIEQIRDLVGAGSSPPW"
     gene            2634..3134
                     /locus_tag="VF788_20870"
     CDS             2634..3134
                     /locus_tag="VF788_20870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016699924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX8936584.1"
                     /translation="MRDLNATSAALLGLLHTGPMTGGQLVVAAGERFGSFFSVTRSQV
                     YRELPVLAEAGLLRLGKKGARSSQQYVLTAAGKRAFKAWLNSTSGPDNLRSPLILRLV
                     HAGQLTAKQRANLVSSARADYVGHVDEAKADVKAAGNPYTKAVAEFTVAHRRAVLKLL
                     DAIPTD"
     gene            3162..4274
                     /gene="prfB"
                     /locus_tag="VF788_20875"
     CDS             3162..4274
                     /gene="prfB"
                     /locus_tag="VF788_20875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009946567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEX8936585.1"
                     /translation="MNADVAAGLKDLDATLAGIEAVLDLDRLRAQVAELQEQVARPDL
                     WDDVEHAQQVNSKLSHKQGDLRRVLGLRQRLEDVEVLYDLAEEGDDEGARDEAETEHN
                     RLRKEIASLEIRTLLAGEYDERDALVTIRSEAGGVDAADWAEMLMRMYLRWAERHGYP
                     TEVYDISFAEEAGIKSATFVVKAPFAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGV
                     EVLPVTETTDHVDIPENEIRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEK
                     SQIQNRAAAMRVLQSRLLERKRQERQAELDALKGEGSSWGNQMRSYVLHPYQMVKDLR
                     TEHEVGNPAAVLDGDIDGFLESGIRWRRQQEARLAG"
     gene            4341..5030
                     /gene="ftsE"
                     /locus_tag="VF788_20880"
     CDS             4341..5030
                     /gene="ftsE"
                     /locus_tag="VF788_20880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007023811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEX8936586.1"
                     /translation="MIRLENVSKSYRTSTRPALDDVSVEVEKGEFAFLIGPSGSGKST
                     LLRLLLREEVASKGDVYVADLNLSKLSQRRIPQLRQRVGCVFQDFRLLGNKTVSENVA
                     FALEVIGKPRHTIRKVVPEVLELVGLEGKADRMPHELSGGEQQRVAIARAFVNRPLVL
                     LADEPTGNLDRDISHEIMLLLERINRTGTTVLMATHDHAIVDSMRRRVVELNLGQVIR
                     DEARGVYGVGR"
     gene            5066..5968
                     /gene="ftsX"
                     /locus_tag="VF788_20885"
     CDS             5066..5968
                     /gene="ftsX"
                     /locus_tag="VF788_20885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020662277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HEX8936587.1"
                     /translation="MRASFVFSEVATGLRRNVTMTVAMILTTAISLGLLGGGLLVVRT
                     IDRMQQDYYQRVETVVYLSADVSANDPGCTSSTCSALRGQLESTPGVQTVIFESRQAA
                     FSRFQRIFSGQPELLQLARPEALPASLRIQLSDPARFPSVAKAFTGKPGVDRVTDQGE
                     YLRQLFRALNGLRNATFVIALIQALAALLLISNTIQLSAFTRRTEVGVMRLTGASRWY
                     TQLPFLLEAVVAGVVGGVLAIVGLVVGKVFFVDRVLAGVFEAAIVPRLGYEDIFSVAP
                     ILLLVGAVVAALTGYVTLRLYVRT"
     gene            6038..6514
                     /gene="smpB"
                     /locus_tag="VF788_20890"
     CDS             6038..6514
                     /gene="smpB"
                     /locus_tag="VF788_20890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012783568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEX8936588.1"
                     /translation="MTRERGRKVIVSNRRARHDYEIMDTYEAGIVLTGTEVKSLRAGR
                     ASLADAFASVDDGEVWLRNLHIPEYTQGSWTNHEPRRTRKLLLHRKEILRLIGKTREQ
                     GLALVPLSMYFADGKVKVEIALGRGKRSYDKRADLAKRDANREVARALGRRAKGMG"
     gene            6572..6942
                     /gene="ssrA"
                     /locus_tag="VF788_20895"
     tmRNA           6572..6942
                     /gene="ssrA"
                     /locus_tag="VF788_20895"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
BASE COUNT         1220 a         2336 c         2542 g         1233 t
ORIGIN      
        1 cgagtacaac cggtcgagcg tcttggcttg gtcgtcgatg tctgcccggc ggaattccca
       61 ggtgtgctgc catggccggt tgagcagcag cagccgcact gccgcggcgg gatggtgggc
      121 gagcaggtcg gagaccagca caaggttgcc cgccgacttg gccatcttgg ctccaccaac
      181 ggtgaccgtc ccgaccggga actgggcccg cgcgaaggga ccgacgccgg tcgccgcctc
      241 caccatggcg gcctggtacg cgtgatgggg aaaggtgaga tccgcgccac ccgccaagac
      301 gtccaccgca ggaccgagca cgcccagtgc gatcgcggcg cattcggcgt gccagccggg
      361 tctaccgcga ccccacgggc tgggccatcc gggctgatcg tcggaggagg ggcgccatac
      421 cggaacgtcg aagggatcat cccgggatgg gtcgtcgggc cgatcaccga attcggccgc
      481 gagctccgtg gcgcgttcca atgtcagtcc ggtcttcgcc agcacgtcag tgccacggaa
      541 gtacaccgca ccgtcgcggt ggtaggcgcg gtcggttgcc agcagcgcgg aggccaattg
      601 cacgacccgc ccgatgtggt ggcgggcccg tggctcgtgc tcggggcggc gtactcgtag
      661 cgcggccatg tcccgcccga acaggaactc ctgctccaaa gcgaactcgt cgtaatgtcg
      721 gccgcgttgc tcggcggcgc gggtcagcac gtcatcgacg tcggtgacgt ttcggcaggt
      781 caccgtctcg gccccggcca gccggcacac cgcagcggcc gcgtctgccc atacgaaggt
      841 gctggcgtgc ccgagatggg tcacgtcata aggggtgatc ccgcagacat agaaccgggc
      901 tgggctgatg attggcagcg cggagccgcc cagccggatc cggtccgtgt gttcgggacg
      961 gccgtgatgg ttcatgcatc catcctgcct gccatcatgc tgggatgggc ggtcgagatc
     1021 gggacagcgc cggacgtgcc cgcaacgccc gtcccaggga cgccctgggc cggccgctac
     1081 cgcacggttc gcctggagtc gaccgggttc ccgaggacgt ggtcctcccc ccggacgagg
     1141 ccctgcggca ggcccagcgg ttcatcgagg atggctaccc ctttcacgcc cacgaggtgt
     1201 tcgagggggt gtggaaggca accgaagggg aacaccgcga gctgtggaag ggtctggcgc
     1261 agttcgcggt gggtctcact cacctccagc ggggcaactc gaagggtgcg gtcacgctgc
     1321 tgcgccgggc cgcagaccgg atcgcccctc attccgccgc cgccccatcc ggcctggacg
     1381 ccgccgcctt ggccggcgac gctcgctggc tcgctgagcg catcacccgt gagtgagaaa
     1441 cagtgttata gcaccgaacg ccactcacgg gtcgaccgga gggagcgagt gtgcgcatcg
     1501 gcatgctctt gagctacagc ggtggattcg ccgaaaccgt cgctgaactg gccgagtacg
     1561 agaaggccgg gttggacatc gtgttcgtgc ccgaggcgta cggcttcgat gcggtcagcc
     1621 agctggggtt catcgctgcg cgcacggagc gactggagat tgcgtcaggg atcctgcaga
     1681 tctacacccg caccccggcg ttgacggcga tgaccgcggc cgggctggac tacgtctccg
     1741 gcggcaggtt caccctaggc atcggggcgt caggcccgca ggtgatcgaa ggcttccacg
     1801 ggctgcccta caccgacccg ctgggccgga cgcgggaact ggtggagatc tgccgcaaag
     1861 tgtggcggcg ggagcgcctg gagtaccagg gtaggcacta ccagatcccg ctgcccgcag
     1921 atcgcggatc ggggtcgggc aagccgctga agctgatcaa tcacccggtt cgggagcgga
     1981 ttccgattgt catcgccgcg atcgggccga agaacgtggc gatggccgcg gagatcgccg
     2041 aaggctggca gcccttcttc tacctgcctg agcgagccgc tgaggtgtgg ggcgactcac
     2101 tggccgccgg ccgggccaag cgggaccagt cgctcggcga gctcgacgtc gtggtcaccg
     2161 cctcgctggc catcacggac gacaaggaca tcgccgccga gttgctcgac gccatccgcc
     2221 cgatgctggc gctctatatc ggcggtatgg gcgccaaggg ccgtaatttc taccatgatc
     2281 tggcctcccg tctcgggttc gaagcccagg ccaatgctgt tcaggatctg tatttggcgg
     2341 gtaagaagga tgaggcggcc gccgcggtgc ccgatgacct cctccgccgc agctcgctga
     2401 tcggctccgc cagctacgtt cgggaacggc tggaagcgct gcgcgcctcg ggcgtcacca
     2461 cgctgaacgt cacaccgatg gccggatcgt cagcggagcg ggtccggctc atcgagcaga
     2521 tccgggatct cgtcggtgcc ggtagctcac cgccttggtg acgttccctg ccacagtgga
     2581 cggtggcagg gccaccgtgg acaagatccg ggcgggcgtg ggaccgtggg cgggtgcgag
     2641 acctgaacgc cacgtcggcg gccttgcttg gactgctgca cacgggcccg atgaccggtg
     2701 gtcagctggt cgtggccgca ggagagcggt ttgggtcgtt cttcagcgtc acccgcagtc
     2761 aggtttaccg ggagctgccc gtgctcgccg aggccggcct gctccggctc ggtaagaagg
     2821 gagcacggtc cagccagcag tacgtcctca ccgccgcggg caaacgcgcg ttcaaggcct
     2881 ggctcaattc cacatcggga ccggacaacc tacgcagccc gttgatcctg cgcctggtgc
     2941 acgccgggca gctcaccgcc aagcagcggg ccaacctggt cagcagcgca cgtgccgact
     3001 acgtcggtca cgtcgacgag gccaaagccg acgtgaaggc cgccggcaac ccgtacacca
     3061 aggcggtcgc ggagttcacc gtggcgcacc ggcgcgcggt gctcaagctg ctcgatgcca
     3121 tccccacgga ctgaccgacg gggcgactac cctggctcca cgtgaacgca gatgtcgccg
     3181 ccggtctcaa ggatctagac gccaccctcg ccgggatcga agccgtgctg gatctcgacc
     3241 ggctgcgggc tcaggtggcc gagctgcagg aacaggttgc ccgccccgac ctttgggatg
     3301 acgtcgagca cgcccagcag gtcaacagca agctctcgca caagcaaggt gacttgcggc
     3361 gggtgctcgg gctgcggcag cggctggagg acgtggaggt cctctacgac ctcgctgagg
     3421 agggcgacga cgagggcgcc cgcgacgagg ctgagaccga gcacaaccgg ctgcgcaagg
     3481 agatcgcgtc gctggagatc aggaccctcc tggccggtga gtacgacgag cgggatgcac
     3541 tggtgacgat ccgctccgag gccgggggag tggatgcagc cgactgggcc gagatgctga
     3601 tgcggatgta tctgcggtgg gctgagcgac acggataccc gaccgaggtc tacgacatct
     3661 ccttcgccga agaggccggg atcaaatcgg cgaccttcgt ggtcaaggca cccttcgcct
     3721 acggcacgct gtccgttgag cagggcaccc accggctggt ccggatctcg ccgttcgaca
     3781 atcagggacg gcggcagacc tccttcgccg gcgtcgaggt gctgccggtc accgagacca
     3841 ctgaccacgt cgatatcccg gagaatgaga ttcgtatcga cgttttccga tcttccggac
     3901 cgggtgggca gagcgtcaac accaccgact ccgcagtacg gatcacccat ctgcccaccg
     3961 ggattgtggt gtcctgccag aacgagaaat cgcagattca aaatcgggct gcggcgatgc
     4021 gggtactgca gtcgcgattg ctggagcgca aacggcaaga gcggcaggcc gagctggacg
     4081 ccctcaaggg cgagggtagc tcgtggggca accagatgcg ctcctacgtg ctgcatccct
     4141 accagatggt caaggacctg cggaccgagc acgaggtcgg caacccggcc gcagtgctcg
     4201 acggggacat cgacgggttt ctcgagtccg gtatccggtg gcgtcgccag caggaagcgc
     4261 gactcgccgg ctgaagttcg ccggggccta ccggcacgtc gccacatgtc ggtggctgtg
     4321 gatgggtaca ctcgccggtc gtgatccggc tcgagaatgt cagcaagtcc tatcggactt
     4381 ctaccagacc cgccctcgac gatgtcagcg tcgaggtgga gaagggcgag ttcgcgtttt
     4441 tgatcgggcc gtccggatcg ggtaagtcca ctttgctgcg gctgttgctg cgggaggagg
     4501 tggctagtaa gggcgacgtc tatgtggctg acctgaacct cagcaagctc tctcagcgcc
     4561 gcatcccgca gctgcgccag cgggtgggct gcgtcttcca agatttccgg ttgctcggaa
     4621 ataagaccgt ctccgagaat gtcgcgttcg ccctcgaagt gatcggaaag ccccggcaca
     4681 ccatccgcaa ggtggtcccc gaggtacttg aactggtcgg gcttgagggc aaggcggacc
     4741 ggatgccgca cgaactctcc ggcggggaac agcagcgggt ggcgatcgcc cgggccttcg
     4801 tcaaccgtcc gctggtactg ctggccgatg agcccaccgg aaatctggac cgcgacatca
     4861 gccacgagat catgctgctg ctggaaagga tcaaccgaac cggcactacc gtattgatgg
     4921 ccacacacga ccacgcgatc gtcgactcga tgcggcgccg cgtcgtggag ctcaaccttg
     4981 gacaggtgat ccgggacgag gcccgcggcg tgtacggcgt cggtcgctag gaccgctcac
     5041 caccgaccga ggaattccac tgcctatgcg tgccagcttc gtgttcagcg aggtcgcgac
     5101 cggcctgcgc cgcaacgtca cgatgaccgt ggcgatgatc cttactacgg ccatctcact
     5161 gggcctgctc ggcggtggac tgctggtggt ccgcaccatt gaccggatgc agcaggacta
     5221 ctaccagcgc gtggagaccg tggtgtacct cagcgcagat gtcagcgcta acgatcccgg
     5281 ttgcacgtca agtacgtgct cggctctgcg cgggcaactg gagtccacgc caggcgtgca
     5341 gaccgtgatc ttcgagagca ggcaggctgc cttctcccgg ttccagcgga tcttctccgg
     5401 ccagccggag ttactgcagc tggccagacc tgaggcgctg ccggcgtcgc tgcggatcca
     5461 gctctccgat ccggcccgtt tcccctccgt cgccaaggcg ttcaccggga aaccaggtgt
     5521 ggatcgcgtc accgaccagg gcgaatacct tcggcagctg ttccgggctc tcaacgggtt
     5581 gcgcaatgcc acctttgtga tcgcgctgat ccaggcgctc gcggccctac tgctgatctc
     5641 caacaccatc cagctctccg cattcacccg gcgcaccgag gtcggcgtca tgcggctgac
     5701 cggtgcctcc cgctggtaca cccagctgcc cttcctcctc gaggcggtgg tcgccggcgt
     5761 ggtcggtggc gtactggcga tcgtcggctt ggtggtcggc aaggtcttct tcgtcgatcg
     5821 ggtgctcgcc ggcgtgttcg aggcggcgat cgtgccacgg ttgggctacg aggacatctt
     5881 ctcggtcgcc cccatcctgc ttctcgtagg cgcagtcgtc gccgccctca ccggttacgt
     5941 aaccctccgc ctctacgtgc gcacctaacc ccatgctcca cagatcgcca gctctcagcg
     6001 gcgccctcgg ctgggagcac cctagggttg ggaagtagtg accagggagc gcgggcgcaa
     6061 ggtgatcgtg tcgaaccggc gagcccggca cgattacgag atcatggaca cctatgaagc
     6121 gggcatcgtg ctcaccggca cggaagtcaa gtcgctccgg gccggtcgcg cctcgttggc
     6181 cgacgccttt gcgagcgtcg atgatggtga ggtgtggcta cgcaatttgc acattccgga
     6241 atacacccag ggcagctgga cgaaccacga gccccggcgt acccgcaagt tgctgctgca
     6301 ccgcaaggag atcctgcggc tgatcggaaa gacgcgggag caggggctgg ccctcgtgcc
     6361 gctgtcgatg tacttcgccg acggcaaagt gaaggtggag atcgcgctgg gtcgcggcaa
     6421 gcggtcctac gacaagcggg cggatttggc caagcgcgac gcgaaccgcg aggtggcccg
     6481 ggccctggga cggcgtgcca agggcatggg gtgaatgtcg gggatgaacg ccggacgtcc
     6541 gggcgttacc ctagggtggt tgtcccgaca agggggtgaa cggtttcgac tctggacgtt
     6601 cagtcagtgg gaagcgtgcc ggtgcaggcg agagaccacc gtaagcgtca tcgcacacca
     6661 ataagcgccg actccagtca gcgcgagttc gccctcgccg cctgagcgag gagcaactct
     6721 gtcggaccgg gggcgtcccc gccccggacc ccggcatcag ctaggggact tcaccgccag
     6781 gcccggtcgc ggggcctggt cgggaaacct acagcgactg ggatcgtcac accggctcgt
     6841 ccgcgtgacc ggtggatccg agtagaggcg tagcggactg cgcacggaga agccctgacg
     6901 aggcgacgga ggacccgggt tcgattcccg gcacctccac cataacggcc ttactcgcca
     6961 tccggacccg taagggcgga ggcgagtaag gccgccgagg tgtatctggg cgtcgtcctg
     7021 agagtcttgt ggtcgtgcgg tggtgtctgt ggtccggatg gcgtgcatga ggctgctgaa
     7081 gggttcgtgg aggtcgtcgg ttgtgacggt gggctggcgc gtgaggtgga cgtcaccgta
     7141 gagccgggcg aagatcgctt tgttgcacag tttgcgggcg tgctcggtgg cggtgtacag
     7201 atcgcgtggc ctgtcgagca ggtcgagtgc ggcggcgagg accgcgcgtc cgggttcgag
     7261 ggtgtcgtga ggtttgttgg agttgccggt tgatttgctg cttgttgttg cggacgtcgc
     7321 gcattctggt t
//
LOCUS       DASVXZ010000995         6134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1330039, whole genome shotgun sequence.
ACCESSION   DASVXZ010000995 DASVXZ010000000
VERSION     DASVXZ010000995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6134
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1330039"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1159)
                     /locus_tag="VF788_20900"
     CDS             complement(<1..1159)
                     /locus_tag="VF788_20900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013674761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEX8936589.1"
                     /translation="MDTWPGSSYPLGSTYDGGGTNFSIFSEAAHRIELCLFDEAGNET
                     RVSLPERDGLVWHGYLPRVGPGQRYGYRVHGPYDPAAGLRCNPSKLLLDPYAKAIDGQ
                     IEWNEALFAYRFGDPDSYNDLDSAPYAMTSVVINPFFDWTDDRPPRVPYNETVIYEAH
                     VKGMTIRHPRIPDDVRGSYAGLAHPVMIKHFRELGVTAVELMPVHQFVHDSTLNERGL
                     SNYWGYNTIGFFAPHNDYACFGTRGQQVQEFKAMVRALHRAGIEVILDVVYNHTAEGN
                     HLGPTLSFRGIDNPAYYRLVEGDQKHYYDTTGTGNSLNVRHPESLRLIMDSLRYWVLD
                     MHVDGFRFDLAATLAREFHEVDRLAAFFDLVNQDPVVSQVKLIAEPWDVGEG"
     gene            1323..3089
                     /gene="argS"
                     /locus_tag="VF788_20905"
     CDS             1323..3089
                     /gene="argS"
                     /locus_tag="VF788_20905"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016697738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEX8936590.1"
                     /translation="MTEHEVRSLIGLVEVAVADAIDRVLPEMAGADPVVRRSEHADFQ
                     SNAVLALAKRTRRRPAELAVAVSEALRADPSTPVTEVTVSGPGFLNLNLADGALWRQV
                     TARLASSRLGVGSPEQGRRTVIDYSGPNIAKEMHVGHLRTTIIGDCLVRVLGFLGAEV
                     IRQNHLGDWGTQFGMLIQYLDDHPEATWRHDQLGEGTSTVSALDNLYRAARTAFDADP
                     ELAERARARVVALQAGDEATVARWREIVAESEYAFREIYRRLGVLLEPEDSDGESSYN
                     PMLPDVVKELSDAGVAVESDGARVMFSDEVTGPDGNPVTLMVRKKDGGYGYDTTDLAT
                     IRHRIRDLKADRILYVVDARQALHFRLIFEAARRAGWLTDGVDVTHVAFGTVLGPDGR
                     PFKTRSGETVKLMELLDAAVEKARASVAEKTHELTDDELTRIAEQAGIGAVKYADLST
                     SRTKDYVFDVDRMVSFNGNTGVYLQYAHTRICSILRKAGDANTEVDPTLPMHPAERAL
                     ILAADTFGDALAEVGRVLEPHRLCGHLYELAKAFTDFYEACPVLPAAEPVRANRIALC
                     TLSARTLREGLNLLGIAAPERM"
     gene            complement(3097..4386)
                     /locus_tag="VF788_20910"
     CDS             complement(3097..4386)
                     /locus_tag="VF788_20910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011874302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX8936591.1"
                     /translation="MNLTDLSTRELILHRDELRREYEALQAQRLALDLTRGKPSAEQL
                     DLSEPLLELPGAGKHLAGDGTDTRNYGGLRGLLEIRQIFGELLQVPTEQLIAFGNSSL
                     ELMHECLVHAVLFGVAGSVQPWGMGTGTAFLCPVPGYDRHFALCEKLGMKMITVSMDT
                     AGPDMDEVERLVAADAAIKGIWCVPKYSNPSGIRYSAQTAGRLARMSTAAADFRIFWD
                     NAYAVHHLTEARHSVSDILGLATAAGHADRPFVFGSTSKITLAGSGVAFYGASPANVE
                     WLTGHLGKRTIGPDKINQLRHALFLETAIGVHAHMDRHRALLKPKFDLVQGTLAEGLG
                     DSGVASWTVPEGGYFVTLEVLDGCASRVVELAADAGIALTAAGAPFPYGKDPDDRLIR
                     LAPTYPPLSELAEALTGLVVCIKLAAIECLLDDPGTG"
     gene            complement(4644..5450)
                     /locus_tag="VF788_20915"
     CDS             complement(4644..5450)
                     /locus_tag="VF788_20915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX8936592.1"
                     /translation="MPSQGFEGAIFDVDGVLVNSPHERAWQDSLRELMDHDWADIAGQ
                     TSWSDERFTPQVYQRVLSGKPRMAGALGALEYFGVPDAAERAEVYAANKQTMVIKLIE
                     AGEFEAYPDALRFVLAVRDVGIPIAAASSSKNAGLFLRQIRLDTFAAEQGLHYDFLRP
                     GLSLLEFFDVDISGRDFAQGKPHPEIFLTAAAELGVAPELCFVVEDAASGVQAAKAGG
                     MAALGVARAGDEVLLAAADADLVVASLDEVDIAGLRQHQLRRRTSPPSVP"
     gene            complement(5431..>6134)
                     /locus_tag="VF788_20920"
     CDS             complement(5431..>6134)
                     /locus_tag="VF788_20920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl hydrolase family 65 protein"
                     /protein_id="HEX8936593.1"
                     /translation="EHPNIGRLDRILKAEGDDPNRYQLAKQADAVMVFYLFSGDEIRE
                     LLEKLGYDYDPDLARRTIDYYDQRTSHGSTLSLVTHAAVLGGLDPESSWQRFLVALES
                     DMGDVQGGTTKEGIHMGVMSGTLDLLQRGYAGASVRDGVLHFEPTLTDHLDGLTFPMQ
                     FRGTSMRVSISGDELIVSILAEGFSRPVRIGIGSEVRELTAGENWAAPLRGQRDRLGN
                     SGRTGEGNDRAVTGF"
BASE COUNT         1098 a         2032 c         1956 g         1048 t
ORIGIN      
        1 ctccctcgcc gacgtcccac ggttcagcga tcagcttgac ttgactgacc accgggtcct
       61 gattgaccag gtcgaagaac gcagcgagcc gatccacctc atggaattcc ctcgccaggg
      121 tagcggccag gtcgaaacga aacccatcta catgcatatc gaggacccag taccgcagag
      181 agtccataat cagtcggagt gactcggggt gacggacgtt gaggctgttc ccggtgccag
      241 tggtgtcgta gtagtgcttc tgatcccctt cgaccagtcg atagtaggca gggttgtcga
      301 taccccgaaa cgacagcgtc ggcccgaggt ggtttccttc ggcggtatga ttgtaaacta
      361 catcgagaat tacctcgatc ccagctcggt gcaacgcgcg gaccatagcc ttgaattcct
      421 gcacctgctg gccacgagtg ccgaagcagg cgtaatcatt gtgcggggcg aagaaaccga
      481 tggtgttgta accccagtaa ttggacagcc cgcgctcatt cagtgtggaa tcgtgcacga
      541 attggtggac cggcatcagc tcgaccgcag tcaccccgag ctcacggaaa tgtttgatca
      601 taacaggatg ggcgaggcca gcgtagctgc cacggacatc atcggggatc cgaggatggc
      661 gtattgtcat ccccttgacg tgtgcttcgt aaatcaccgt ctcgttgtaa gggactcgcg
      721 gcggccggtc gtcggtccag tcgaagaacg ggttgatcac tactgaggtc atcgcgtacg
      781 gcgcggagtc gagatcgttg taggagtcgg ggtcgccgaa ccggtacgcg aacagcgcct
      841 cgttccactc gatctggccg tcgatcgcct tggcatacgg atcgagcaac agcttgctcg
      901 ggttgcaccg caagcccgcc gccgggtcgt aaggaccgtg cacccggtag ccgtagcgct
      961 gcccggggcc gacccgtggc aggtagccat gccagaccag gccgtcgcgt tcgggtagcg
     1021 agacccgcgt ctcgtttccc gcctcgtcaa acaagcacag ctcgatccgg tgagcggcct
     1081 cggagaagat ggagaagttg gtgcccccgc cgtcatatgt agagcccagt gggtaggacg
     1141 aaccaggcca agtgtccaca gaccctccgc agatccacga tgtcgtgcgg cgagccgcaa
     1201 ccgcccaagg atgcctttgt atcgtctaca cacatcggtc gccacttaaa cacagcgcga
     1261 cgccggggcg taggggtcac gtctgggaca atgacttcac cgcgaacaag gaggatgccc
     1321 ggttgactga gcatgaggtg cgctcgctga tcggcctggt cgaggtcgcg gtggccgacg
     1381 cgatcgatcg ggtgttgcct gagatggccg gcgctgaccc ggtggtccgg cgctccgagc
     1441 acgccgattt ccagtccaac gctgtgctgg cgctcgccaa acgcacccgc cgccgccccg
     1501 ccgagttggc ggtagccgta tccgaggcgt tgcgtgctga tcccagcaca ccggtaaccg
     1561 aggtcaccgt ctccggaccg ggatttctga acctgaacct tgccgacggt gccctatggc
     1621 gccaggttac cgcccggctg gccagctcgc ggctgggcgt cggcagcccc gagcagggcc
     1681 ggcgcaccgt catcgactac tccgggccca acatcgccaa ggagatgcac gtcggtcacc
     1741 tgcgcaccac aatcatcggc gactgcctgg tccgcgtgct cggctttctc ggcgccgagg
     1801 tgatccgcca gaaccatctc ggtgactggg gcacccagtt cggcatgctg atccagtacc
     1861 tcgatgacca tcccgaggcg acctggcggc atgaccagct gggcgagggc acatcaacgg
     1921 tctctgcgct ggacaacctc taccgcgctg cccgcaccgc gttcgatgcc gacccggaat
     1981 tggccgagcg ggcccgagcc cgcgtggtgg cgttgcaagc cggcgatgag gccaccgtcg
     2041 ctcgttggcg ggagatcgtc gccgaatcgg aatacgcgtt ccgggagatc taccgccgcc
     2101 tgggcgtgct cttggagccc gaggactccg atggtgagtc ttcctacaat ccgatgctcc
     2161 ccgacgtggt caaggagctc tccgacgctg gtgtcgcggt ggaaagcgac ggcgcgcgcg
     2221 tgatgttctc cgatgaggtg accggtcctg acggcaaccc tgtcacgctc atggtgcgca
     2281 agaaagacgg cggctacggc tacgacacca ccgacctggc caccatccgg caccgcattc
     2341 gcgatctcaa agccgaccgc atcctctacg tcgtggacgc ccgccaagcc ctgcacttcc
     2401 ggctcatctt cgaggcagcg cgccgtgccg gctggctcac cgatggtgtc gacgtcacgc
     2461 acgtcgcctt cggcaccgtg ctcggccccg acggccggcc cttcaagacc cgctccggcg
     2521 agaccgtcaa gctcatggag ctgctggatg ccgccgtcga gaaggcgagg gccagcgtcg
     2581 ctgagaaaac tcacgagctc accgacgatg aattgacccg gatcgctgag caagccggca
     2641 tcggtgcggt caagtacgcc gatctgtcca cctcgcgcac caaggactac gtgttcgacg
     2701 tcgaccggat ggtgtcgttc aacggcaaca cgggcgttta tctccagtac gcgcacaccc
     2761 ggatctgttc cattctccgc aaggccggtg acgcgaacac cgaggtcgat ccgacgctgc
     2821 ctatgcaccc cgcggagcgg gcattgatcc tcgctgcgga cacattcggg gacgccctcg
     2881 ctgaggtcgg ccgggtactg gaaccgcacc gactctgcgg gcacctgtac gaactcgcga
     2941 aagcgttcac cgatttctac gaggcttgcc cagtgctgcc tgcagcagaa ccggtccggg
     3001 cgaaccgcat cgcgctgtgc acgctgtccg ctcgcacctt gcgagaaggc ctgaacctgc
     3061 tgggcatcgc cgcgcccgaa cgcatgtagc ggacgctcac ccggtgcccg ggtcgtcgag
     3121 caggcactcg atggcggcca gcttgataca cacgactagt ccggtcagtg cctcggccag
     3181 ctccgagagg ggcgggtagg taggcgcgag ccggatcagc cggtcgtcgg gatccttgcc
     3241 gtacgggaac ggggctcctg ccgcagtcag tgcgatgccg gcgtcggcgg ctagctcgac
     3301 aacccggctg gcgcagccgt ccagcacctc gagggtgacg aaatagccgc cctcgggcac
     3361 ggtccagctc gccacgccgc tgtcaccaag cccctcggca agggtcccct gcacaagatc
     3421 gaacttcggt ttgagcaagg cgcggtgccg gtccatgtga gcgtgcacgc cgatcgcggt
     3481 ctccaggaac agcgcgtggc gcagttggtt gattttgtcc gggccgatgg tgcgtttgcc
     3541 cagatgcccg gtcagccact ccacgttggc cggcgaggca ccgtagaagg cgaccccact
     3601 ccccgccagc gtgatcttcg atgtagagcc gaacacgaac ggccggtcag cgtgacctgc
     3661 ggcggtggcc aggccaagga tgtcgctgac cgagtggcgg gcctcggtca gatggtgcac
     3721 ggcgtacgcg ttgtcccaga agatccggaa gtcagcggcg gcggtggaca tccgggccaa
     3781 ccggccggcg gtctgcgctg agtaacggat gccggagggg ttgctgtact tcgggacgca
     3841 ccagatcccc ttgatcgcgg cgtcagccgc gaccagccgc tccacctcgt ccatatccgg
     3901 ccctgcggtg tccatcgaca cagtgatcat cttcatgccc agcttctcgc acagcgcgaa
     3961 gtgccggtcg tagccgggta ccgggcacag gaaggccgtt ccggtcccca tcccccacgg
     4021 ttgcaccgac ccggccaccc cgaacagcac ggcgtggacc aggcattcgt gcatcagctc
     4081 caggcttgag ttaccgaagg cgatcagctg ttcggtgggc acctggagca gctcgccgaa
     4141 gatttgacgg atctccagca gcccgcgcag gcctccgtag ttgcgggtgt cggtaccgtc
     4201 gccggccagg tgcttgccgg ctcctggcag ctccagcagt ggctcggaca ggtccagctg
     4261 ctcggccgag ggcttgcccc tggtcaggtc gagagcgagc ctctgtgcct gcagcgcctc
     4321 gtactcgcgg cgcagctcgt cccggtgcag gatcagttct cgggtggaca ggtcggtgag
     4381 gttcacccct gcatcatcgc tggcccgagc aagaaacacc gtagttcgcc ggccacaaat
     4441 cggcttaccc cacccgtcac ggctaggggg tggcgagcgg ctgcaaggac tggggggagg
     4501 cagccgctcg cccgacctga gggacgcccg agtcgggagg ggctccgaca cggacatccc
     4561 ctggtcttaa gactgagcgt agggaagttc ggttatcgca cggttccagc ccggcaagcg
     4621 gagggcaaaa tcccgcagtc atgtcacggt acactcggtg gtgacgtccg ccggcgtagc
     4681 tggtgctggc gcagacccgc gatgtcgacc tcatccagcg atgcgacgac aagatcagcg
     4741 tccgcggccg ccaagagcac ttcgtcaccg gctcgggcaa cacccaaggc ggccatgcca
     4801 ccggccttgg ccgcctgcac accgctggct gcgtcctcaa ccacgaagca gagctccggg
     4861 gcgacaccga gctcggccgc tgcggtcagg aaaatctccg ggtgcggttt gccctgcgcg
     4921 aagtcgcgac cggagatgtc gacgtcgaaa aactccaaca ggctcaggcc gggccgcaaa
     4981 aagtcatagt gtaggccctg ctccgcagca aaggtgtcga gccggatctg gcgaaggaac
     5041 agtccggcgt tcttcgacga tgacgccgcc gctatcggga tgcccacgtc gcgcaccgcc
     5101 agcacgaaac gcaacgcgtc gggataagcc tcgaactccc ccgcctcgat gagcttgatg
     5161 accatggtct gtttgttcgc ggcgtagacc tccgcccgct cggcggcgtc gggaaccccg
     5221 aagtactcca gtgctcccaa cgctccggcc attcgcggct tgccggagag tacccgctgg
     5281 tagacctgcg gcgtaaagcg ctcatcggac cacgaggtct ggcccgcgat gtcggcccag
     5341 tcgtgatcca tcagctcacg cagcgaatcc tgccacgccc gctcgtgcgg cgagttgacc
     5401 agcacgccgt ccacgtcgaa aatcgctccc tcaaaaccct gtgacggcac ggtcattccc
     5461 ttccccggtg cggcctgaat ttcccagacg atcgcgctgc ccgcgtagcg gcgcggccca
     5521 gttttcgcca gcagtgagct cccgcacctc gctaccgatg ccgatccgga ccggccggct
     5581 gaagccttcg gccaggatgc tcactatcag ctcatcgccg gaaatgctga ctctcatcga
     5641 cgtgccgcgg aactgcatcg ggaacgtgag cccgtcgagg tggtcggtga gcgtgggttc
     5701 aaagtgcagg accccgtcgc gcacgctggc gccggcgtag ccgcgctgca ggagatccag
     5761 cgtcccggac atgacaccca tgtgaatgcc ctcctttgta gtgccaccct gcacatcacc
     5821 catgtcgctc tcgagcgcga cgaggaagcg ctgccaggag ctctccgggt ccagaccgcc
     5881 gagcacggcg gcgtgggtga ccaggctcag ggtcgagccg tgggaggtgc gctggtcgta
     5941 atagtcgatc gttcgccgag cgaggtccgg gtcgtagtca tacccaagtt tttcgagcag
     6001 ctcgcgaatt tcatcaccgg agaacagata gaacaccatc accgcgtcag cctgcttggc
     6061 cagctggtag cgattgggat catcgccctc ggccttgagg atgcggtcca ggcgcccgat
     6121 gttgggatgc tcgg
//
LOCUS       DASVXZ010000996         4650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1331269, whole genome shotgun sequence.
ACCESSION   DASVXZ010000996 DASVXZ010000000
VERSION     DASVXZ010000996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 4650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4650
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1331269"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1066
                     /locus_tag="VF788_20925"
     CDS             <1..1066
                     /locus_tag="VF788_20925"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX8936594.1"
                     /translation="AAGSVVRVASMLERAHTIAEEVLFPAAVEVDARGAIPRSHFDLL
                     AEEGFYGLASEPEHGGPGVDIPSLAGILEALVSGCLATTFTWMQHHGVVRGLTGTANA
                     ELRDKYLHAAIRGEVRGGVAYAGAIPQPPRLWATATGSGWLLDGEAPLVTGWGIVDVL
                     LISARNTVIRAGESAGTIVSGLVDATGGPGIAVDELRMVAAQGSNTVRLRFTDYVLPV
                     EKVIAEVSHRDFLARQLVNARLNGCLAMGIARRCVRMIGEAGRAEIGKLLHTEQGVIR
                     QRLDGALAEPATMPAARAAASEHAYRCAGALVVAGGSSGILARQHAQRLVREATFTLV
                     AAGRPEIKDRLLKVLGQVHE"
     gene            1172..2785
                     /locus_tag="VF788_20930"
     CDS             1172..2785
                     /locus_tag="VF788_20930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015098422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX8936595.1"
                     /translation="MKRGPKLSIGLVLSAVASLALACASAPDKTAQRAPAGVVPAGLE
                     QFYSQRLSWAGCTSFAETPRDKTAYADPGLQCAFLNVPLDYANPNGRVIKIGLLRRPA
                     SDQAHRVGSLVINPGGPGASGMSTAASLSEDIANNEIGKRLDLVGFDPRGVGSSEPQV
                     VCRTRETRDAERLMNLNVDSSPAGVAKTENQEKADNEACVARTGKDVLANVGTRDVVR
                     DMDVMRSALGDDKLTYLGYSYGTRIGASYAEAFPKNVRAMILDGAVDPAQDQIAQLID
                     QGRGFQKAFDAFVAWCVGQPDCGLGKDSGQAVTRFQALVRPLIDQPVSVSDGRKMSYS
                     DATIGTVQALYLNSLWPTLNLGLQQLAQGRSNADCQALNSQISCLMRLADIYYGRSQD
                     GSYSTEMDVFQAVHCADDPAIKDPNVVRDIDVQYRKVAPFLDNGQPPSPALDNCAFWP
                     VPSTGGPHHPQTPGLPAVMVISTTQDPATPYQAGVNLARDIKARLLTFEGTRHTAFLQ
                     GNKCVDDAGINYLTNLELPAEGIRCKSDT"
     gene            3199..>4650
                     /locus_tag="VF788_20935"
     CDS             3199..>4650
                     /locus_tag="VF788_20935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020498008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HEX8936596.1"
                     /translation="MLGLLLAALDQTIVSTAIRTIADDLHGLNLQAWVTTAYLITATI
                     STPLYGKLSDLYGRKPYFLAAISVFIVGSVLCTISTSMYELATFRAVQGLGAGGLMSL
                     AFAIIGDIVPPRERARYQGYFLAVFGTASVIGPLIGGAFAGADSILGIAGWRWVFLVN
                     VPIAAAALVVVARVLNIPHTPRVHRIDWPGAVTLAVGVIPLLVVAEQGRDWGWGSVAA
                     VACYGIATVGLVGFVMAERRIGDEALLPLRLFRNSVFSVTSTGGLIIGTGMFGGLILI
                     PQYLQIVKGASPTEAGLLLLPLMGGIMLASVVSGQLTSRTGQYKIFPVLGTALMVLAL
                     LLLYLRLGVDTSLPEVDVYMALFGIGLGGCLQTLIMAAQNAVPARDMGVATSSATFFR
                     QMGGTLGVAVFLSILFSTAGSKIATAFRTIAPTPEFQSALADPALRANPASDVVVEAV
                     RSGGAMGSGNAGGVLQDSSFLQHIDPRLARPFLV"
BASE COUNT          769 a         1470 c         1503 g          908 t
ORIGIN      
        1 agctgcgggt agcgttgtgc gggtggcgag catgctggaa cgggcccaca cgatcgcgga
       61 ggaggtgctg ttcccagcag ccgtcgaggt cgacgcgcgg ggagcgatcc cgcgtagcca
      121 tttcgacctg ctcgccgaag agggctttta tggcctggcg agtgaacctg aacacggtgg
      181 tcccggggtc gacatcccgt ctttggccgg catcctcgaa gcgctggtga gtgggtgcct
      241 cgccaccaca ttcacttgga tgcagcacca cggcgtggtc cgtggcctta ccggcacggc
      301 gaacgcggag ctgcgggata agtaccttca tgcggcgatc cggggagagg tgcgcggcgg
      361 ggtggcgtac gccggcgcga tcccgcagcc tccgcggttg tgggccacgg ccaccggcag
      421 cggctggcta ctcgatggtg aggccccgct ggtcactggc tggggcatcg tcgatgtact
      481 gctgatctcg gcccgcaaca cggtgatcag agcgggggag tccgcgggca ccatcgtcag
      541 cggattggtc gatgcgacgg gtggtccggg catcgccgtc gacgaactcc gcatggtcgc
      601 tgctcaaggc agcaacacgg tgcggttgcg cttcaccgac tatgtgttgc cggtcgagaa
      661 ggtcatcgcc gaggtctcac accgcgattt cctcgccagg caactggtga atgcgcggct
      721 caacggctgc ctcgccatgg gaatcgcccg gcggtgcgtc cggatgatcg gcgaagccgg
      781 ccgagcagag atcgggaagc tgctgcacac tgagcagggc gtgatccgtc agcgtctcga
      841 cggtgcactc gctgaaccgg cgacgatgcc ggctgcgcgg gccgctgcgt ccgagcatgc
      901 ttaccgctgc gccggagcgc tggtggtggc agggggcagc tcagggatcc tcgctcggca
      961 gcatgcccag cgcttggtcc gagaggcgac cttcaccctc gttgccgcag gccgccccga
     1021 gatcaaagac cgcctcctga aggtgctcgg ccaggtccat gagtaagctc acccggtgga
     1081 agagtccggt tgcgcagtgt gatcttcgcg gtgggctcat cacggactgg tcattactgc
     1141 ggcgagcagc aggtaggcgg aggattctgg gatgaaacgt gggccgaagc tgtccatcgg
     1201 gctggtgctc tccgcggtgg cgtcactagc tctggcgtgt gcgtccgcgc cggacaagac
     1261 tgcgcagcgg gcacctgccg gcgtcgtccc agccggcctg gagcagttct acagccagcg
     1321 tctgtcctgg gccggttgca cctccttcgc tgaaactcct cgggacaaga cggcctacgc
     1381 cgaccccggc ctgcaatgcg cattcctcaa cgtgccactg gattacgcca atccgaatgg
     1441 ccgggtcatc aagatcggcc tgctccggcg acccgcatcg gatcaggccc atcgtgtcgg
     1501 ctctttggtg atcaaccctg ggggacccgg cgcatctggt atgagtaccg cggccagcct
     1561 ctccgaggac atcgcgaaca atgagatcgg gaaacgcctt gaccttgtgg gattcgaccc
     1621 gcgcggcgtc ggctccagtg aaccgcaggt ggtctgccgg acccgcgaga cacgcgatgc
     1681 cgaacgcctg atgaatctca acgtcgactc ctcgccggct ggggtcgcga agacggagaa
     1741 tcaggaaaag gccgacaacg aagcatgtgt cgcccgtacc ggcaaagacg tactcgcgaa
     1801 tgtcggcact cgtgacgtcg tccgcgacat ggatgtcatg cggtcggcgc tcggcgatga
     1861 caagctgacc tacttgggct actcctacgg caccaggatc ggtgccagtt acgccgaggc
     1921 cttccccaag aatgtccgcg ccatgatcct cgacggtgct gtggacccgg cgcaggacca
     1981 aattgcccaa ctcatagacc agggtagagg attccagaag gctttcgacg ccttcgtggc
     2041 gtggtgtgta ggtcagcctg actgtggctt ggggaaggat agcggccaag ctgtcaccag
     2101 gttccaagct ctggttcgcc cgttgatcga ccagcccgtc agcgtgtccg atggacgcaa
     2161 gatgtcctac agtgatgcca ccatcggcac cgttcaagcg ctctatctca acagcctatg
     2221 gccgacgctg aacctcggtt tgcagcagct cgcccagggc agatcgaacg cagattgcca
     2281 agctctgaac tctcagattt cctgcctcat gcgtctggcg gatatctact acggacgttc
     2341 acaagatggc agctactcca ccgaaatgga cgtcttccag gcagtccact gtgccgacga
     2401 tcctgccatc aaagacccga atgtggtccg cgacatcgat gtccaatatc gcaaggtcgc
     2461 tccattcctt gacaacggac agccgccttc gccggcgctt gacaactgcg cattctggcc
     2521 ggtgccttcc accggtggac ctcaccaccc ccagaccccc ggcttgccgg ccgtgatggt
     2581 gatctccacg actcaggacc cggctacgcc gtatcaggcg ggtgtcaacc tcgcccggga
     2641 catcaaagcg cgcctgctga cctttgaagg cacccggcac accgcattcc tgcaagggaa
     2701 caaatgcgtc gatgacgccg gtatcaacta cctcaccaat ctggagctcc ctgctgaggg
     2761 aatccgttgc aaatctgata cctgagtgtt gccggaacca accaaagtat cctttgtgaa
     2821 ggatcgctga gttgtgggca acgttcttgt cgtcgacgag gacgtgctag acctgcacct
     2881 caccggcgtg ctcatcagca cggcatccac cgcctagtgc cagacggcca ggcggatccc
     2941 ggttgcgggc agcctcgcca agagtgcatg cttgcggcgt acatttactt gtatgcggca
     3001 accaatgggt atgggtgcgc ctcctggtga cgggaccgac gggaccgtcg cggcgaagca
     3061 caccgtcctg gtcacccagg agggattctg ttcatgaccg tcaccgtggc ggtggagcct
     3121 gagcgctacc acaactcccc ggcgccggcg cccagacctt tcacccaccg ccagatcttg
     3181 accatcctcg gcgggttgat gctgggtctc ctgctggcgg cgctggacca gacgatcgtg
     3241 tcgacagcga ttcgtaccat tgccgatgac ctgcacgggt tgaacctgca ggcgtgggtg
     3301 acgaccgcct acctgatcac tgcaacgatc tccactccat tgtatggcaa gctgtctgac
     3361 ctttacgggc gcaagccgta cttcctcgcc gctatctcgg tcttcattgt cggatcggtg
     3421 ttgtgcacga tctctacctc gatgtacgaa ctggccacct ttcgtgccgt gcagggcttg
     3481 ggtgccgggg gcttgatgtc gctggcgttc gccatcatcg gtgacatcgt gccgccgcgt
     3541 gagcgggccc gttatcaggg ctatttcctt gcggtcttcg gcaccgcgag cgtgatcgga
     3601 ccgttgatcg gtggtgcgtt cgccggggcc gactccatcc tggggatcgc cggatggcgg
     3661 tgggtgttcc tggtcaacgt gccgatcgcc gcggctgcgc tggtcgtcgt tgcccgggta
     3721 ctcaacatcc cgcacactcc gcgcgtgcac cgcatcgact ggccgggtgc ggtgacactg
     3781 gctgtcgggg tgataccgct actggtggtg gctgaacagg gccgggactg gggctggggc
     3841 tcggtcgcag cggttgcctg ttacgggatc gccacggtcg gtctcgtcgg gttcgtgatg
     3901 gcagagcgac ggatcggcga cgaggcgttg ttaccgctac gcctgtttcg caacagcgtg
     3961 ttcagcgtga cgtcgaccgg ggggctgatc atcggcacgg gcatgttcgg cggtctcatc
     4021 ctcatcccgc agtatctgca gattgtcaaa ggcgcgtcgc ctacggaagc cggcctgttg
     4081 ctgctgccac tgatgggcgg gatcatgctt gcctccgtgg tatccgggca gctgacctct
     4141 cggaccggtc agtacaagat cttccccgtg ctggggacgg ctttgatggt cctcgcgctg
     4201 ctgttgctgt acctccgtct gggagtcgac acctccttgc cagaggttga tgtctacatg
     4261 gcgttgttcg gtatcgggct gggtggctgc ctgcagacgt tgatcatggc cgcgcagaat
     4321 gcggtgccgg cccgggacat gggcgtggcc acctcctcgg ccacgttctt ccgccagatg
     4381 gggggcacct tgggtgtcgc ggtgttcctg tcgatcctgt tctccaccgc tggaagcaag
     4441 atcgccaccg cgttccgcac catcgcgccc acaccggaat ttcaatctgc actcgccgac
     4501 ccggcactcc gcgccaaccc ggcgagcgat gtcgtcgtgg aggctgtccg ctccggtggt
     4561 gctatggggt ccggcaacgc cggtggggtg ctgcaggact cctcgttcct gcagcacatc
     4621 gatccccggc tggcccggcc ctttctggtg
//
LOCUS       DASVXZ010000997         3493 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1331594, whole genome shotgun sequence.
ACCESSION   DASVXZ010000997 DASVXZ010000000
VERSION     DASVXZ010000997.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 3493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1331594"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..172
                     /locus_tag="VF788_20940"
     CDS             <1..172
                     /locus_tag="VF788_20940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015099021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEX8936597.1"
                     /translation="GKVAQDYGVFNEAAGIANRGTFLVDTDGVVRFAEMNGPGEPRDQ
                     TIWKQALAALPT"
     gene            197..271
                     /locus_tag="VF788_20945"
     tRNA            197..271
                     /locus_tag="VF788_20945"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:229..231,aa:Val,seq:tac)
     gene            277..870
                     /locus_tag="VF788_20950"
     CDS             277..870
                     /locus_tag="VF788_20950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936598.1"
                     /translation="MSPETVFLNLWHTAVRANCGDQLVSSPGVVRHKVIRAECEHTAV
                     GSLVGSHQPCQHQSEVEVGGRQAAASPTSLVLGRCVPGDVFRCWIAEPGQNGPRVQLV
                     LVAVEEKVVVGEAVPRLLPQRDLGAAQSCSDLGAVAEAGGSHSQLRRGGTAFRGKTFP
                     CCGQCCGSGPVLVDQCSPAVHFTAPCADLVLLGFPAQ"
     gene            1595..1762
                     /locus_tag="VF788_20955"
     CDS             1595..1762
                     /locus_tag="VF788_20955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936599.1"
                     /translation="MNYPLMIALGLLFLAVSFLVTHSTARTALVVLSCVAFLIAVILT
                     LIGTGGVPGSG"
     gene            2844..>3493
                     /locus_tag="VF788_20960"
     CDS             2844..>3493
                     /locus_tag="VF788_20960"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX8936600.1"
                     /translation="MVYTGAGDRMLGHHGLLHPATADLAATVAPLISERLMRDQPVLA
                     VLPTTTTIRLRTQLPTLAGLHTTDPGELYRHPGRVLAHYRAWISDTSQDGEPVTIVAA
                     PDPRHDDMHRAALWMHVEAVTTLALAERALTLVCVYPDDVGTADTVRCVHPSLLNGMA
                     SPNPDHLPAEQFLARYPLPPPIALAEPDFIHAIGHFAQLSRLRQVVAGYLIRAGLPA"
BASE COUNT          583 a         1107 c         1150 g          653 t
ORIGIN      
        1 cggcaaggtc gcgcaagact acggggtatt taacgaggct gccggcatcg ctaaccgggg
       61 taccttcctg gtggacactg acggggtggt ccgcttcgcc gagatgaacg ggcccggtga
      121 gcctcgcgac cagaccatct ggaagcaggc cctggccgca ctgccaacct gaacaccgcg
      181 ccacccgggt ggcctcgggc gcatagctca gcggaagagc gctcgcctta caagcgagtg
      241 gtcgcaggtt cgagtcctgc tgcgcccacc attgtgatgt cgccggagac cgtattcctc
      301 aacctctggc acaccgcggt acgtgctaac tgcggcgacc agctcgtcag ctcgccagga
      361 gttgttcggc acaaggtgat tcgtgccgag tgcgagcaca ccgcagtggg cagcctcgtc
      421 gggtcgcatc aaccgtgcca gcaccagtcc gaggtcgagg taggtggtcg tcaggcggcg
      481 gcgtcgccca ccagcctggt actgggccgc tgcgtgccgg gtgatgtctt ccgctgctgg
      541 atcgctgagc caggacagaa tggtccccgt gtacagctcg tacttgtcgc cgtcgaagaa
      601 aaagtggtgg tcggggaggc ggtcccccga ctgctgcccc agcgtgacct cggcgcggcg
      661 cagagctgct cggacctggg tgccgtcgcc gaggcgggcg gctcacatag ccagctgcgc
      721 cgcggcggga ctgccttcag gggcaagacc ttcccctgct gtggccagtg ctgcggctcg
      781 ggcccagtct tggtcgacca atgcagtcca gctgtccact tcacagcccc atgcgctgat
      841 ctcgtcctgc tcggtttccc ggcccagtga tccggcgacg gttcgcgcgc tgctcgccgc
      901 gtcacgctgg ccaaggtcga cgtgcaaggt ggccgcgagg agtgctgtcc agccgcctgc
      961 gattagcagg cggcgcccgc gccatggtgt ctacgcggca gtccaggagg tcaagtgtgg
     1021 tgggggagac gtcgctggct tcggcgcggg cggccagctc cagcagttca gtcgactgcc
     1081 agtctcgatc gcggatgccc gggttatggg gcactcggtc ggccgcttcc caggctgcga
     1141 gcaaatcacc gtcggcgtcc agggcggcgt ctagctccgg tacaacggtc gctgtaggcc
     1201 agcgcttgcc gtgttcgacg tagccgagat acccgcggtg cgcgtgtgcc ttgacgacca
     1261 ggacagtggc gaaccggatg gagactcacc tcgagctgcg ggcacaacac tggccgacga
     1321 gcttcgggcc gtcatggtga ccgcctagac tcgtgcatcg aaagcttcat gagcagatcc
     1381 aggactcgga ctcggctggc gcctggcgcg caacgtcgag gtgctggtga aggctagggg
     1441 caccgcgcga agctcctcgg cgttgatgcc ccggagagcg ttgaggccac ggccgtcgag
     1501 atcagccagg aggaggtcgc gctggcggag cgggtgcggg aggctcatgt tgcggctgcg
     1561 gtggccgagc aactattgcg agggggattg gtccatgaac tatccgctga tgatcgcgtt
     1621 aggtctgctg ttcttggcgg taagcttcct ggtgacgcac tcgacggcgc gtaccgccct
     1681 ggtcgtcttg tcctgcgtgg cgtttcttat cgccgtcatt cttactctca tcggtaccgg
     1741 tggcgtgcct ggcagtggct gagtgaccac cactctcctg ggtactcagc gggctctggc
     1801 cggtaggagt ctgatctgtg ggcataggtg ggacgatcgg ttgtggcccc tcgatcacct
     1861 agggtgcggc aaggccgtcc aggctgtcgg tgatcgcccg tacggcccgg atcgctagtc
     1921 gtgtggtcgt gggttaattg ttgcgaacgc aggtttacga ctgtccatgc gagccattag
     1981 catgagcgtt tgcccatgag aggagccaac gatgtctgag cctcatactc cccccgaaga
     2041 tgcgcctggt gcagacacgg tgaaggaaca cgaggagcag acagacgagc aaatggatac
     2101 aggagcgggt aacgccgagc cagatccggc tacggctgag aaccctccga gcgataccgg
     2161 cgcgggggac agaaaacggg accagcagta atgtccgagt ccgttaagtc ggggtcgggg
     2221 atcgggcgga cggttggtga caggtcagta tgggccgact gattgctctg ctcgtcacca
     2281 gttctcttct ctgattggaa gtgtcgctta acttcacggg ccgacgcccc gtgaagttaa
     2341 gcagttatcc cactcaactg ttcactattg ctcggaaaat gggactgcac ggcggtcgtc
     2401 tcggacattc cagtgaggct aacgcagccg cgtctagttc gggccagttc ggtctacggc
     2461 gcgagtcacc aggtctgcga ggtaatgtaa tcggtcggag atcgacctga tcgcttatgc
     2521 gtttgttgag ccgcggtttc gtgagttcat ccaattccac tttaactgtt actgcgaact
     2581 ccgatagccg ggcgcgaaca attcaccgcc agcaacccgt ttcggcactg cggtgaagca
     2641 cctgaacctg ccgcgagcga gctcccctac agcacccacg ccgggccgat ccatatcagg
     2701 cggttcgtcc tgcctggccg cggaccgcag gtttcggcag ccgtgacgat ggggaactac
     2761 tggcattcag gtgcctctgt atgacgccag cagatggtca cggcagtaag aagggctgac
     2821 gtggcggcgg agaggatgcg acgatggtgt acaccggggc cggtgatcgg atgctcggtc
     2881 accatgggtt gctccacccc gccaccgcgg atctggctgc caccgttgcc ccgctgatta
     2941 gcgaacggct gatgcgcgat cagccggtgc tggccgtgtt gcccaccacc accaccatcc
     3001 ggctacgcac ccagctcccc acgctcgccg gtctgcacac caccgaccct ggtgagctct
     3061 accgccatcc cggccgggtg ctggctcact accgcgcctg gatctccgat acgagccagg
     3121 acggcgagcc ggttaccatt gtggccgctc cggatccgcg ccatgacgac atgcaccgcg
     3181 cggcgctgtg gatgcacgtc gaggccgtca caaccctggc tctagccgag cgtgctctca
     3241 cgctggtctg cgtgtacccc gatgacgtcg gcaccgccga cacggtgcgc tgcgtgcatc
     3301 caagcctgct caacggcatg gccagcccca atccggacca cctaccagcg gaacagttcc
     3361 tggctcgtta cccgctgccc ccgccgatcg cgctggctga acccgatttc atccatgcca
     3421 tcggccactt cgcgcagttg tccaggctgc gccaggtcgt ggccggatac ctcattcgcg
     3481 ccgggctgcc cgc
//
LOCUS       DASVXZ010000998         2287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1331720, whole genome shotgun sequence.
ACCESSION   DASVXZ010000998 DASVXZ010000000
VERSION     DASVXZ010000998.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1331720"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..126)
                     /locus_tag="VF788_20965"
                     /pseudo
     CDS             complement(1..126)
                     /locus_tag="VF788_20965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(195..1247)
                     /locus_tag="VF788_20970"
     CDS             complement(195..1247)
                     /locus_tag="VF788_20970"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX8936601.1"
                     /translation="MRASKRSATRAQLRVPRTRATHTPDRVGLGNSMQCPEQRYSCAA
                     RAWLAALSRLVPRRSWAAIFPVTPGTILACHRKLISRKWDYTARRQPGRPPTTAAIKK
                     LVLRMADENPSWGHRRVQGELVRLGHHIAASTVWQILHDAGIDPAPRRSGPSWHQFLT
                     AQAKAVLAVDFVHVDTVLLRRIYALIAVEHGSRRAHLAGVTAHPTGAWTTQAARNLMM
                     NLDDRVATIIFLLRDRDSRFTSAFDEIFTAEGIRILTSPPRARRANAICERLIGTLRR
                     ELLDRVLVVIERHLRRILKVYLHHFNTARPHRTLAQLTPTQTETGTPRMINLASYQLH
                     RRAILDGLTSEYQIAA"
     gene            1246..1878
                     /locus_tag="VF788_20975"
     CDS             1246..1878
                     /locus_tag="VF788_20975"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HEX8936602.1"
                     /translation="MTQLHQIGRIVLMVQAPLLSALGLAGFLAAASSPTGVGHVAGFA
                     LNTPHSGLLLATGVVSGLTALWRRIGRRWAIIQAILYMLVFVIGTAPSNGRSEDTWLA
                     LNTPDHFLHLGLALLGGVLSTALFWPAAPDHAMSSILPGDPPPAEQRPPTTGGTSEET
                     RNMIDAEVAVTEGHATPEQARRVQEDAQHRVDAERRRAWKQSESQPHDGH"
BASE COUNT          384 a          664 c          789 g          450 t
ORIGIN      
        1 tcgcgaatag gcgtccatca cggctgcgca gtacagcttc ccttctcttg ttggatgttc
       61 tgtgatatct gtcaaccgca gccggtttgg tgcctcgacg gtgaagcggc ggtggaccag
      121 gtcgtcctcg gtcgtgtggg gctcgaatat aggaggccgg gcttggcctg cgggttctcg
      181 gatttccggt tgggtcatgc tgcgatttga tactcgctgg tgagcccgtc gaggatcgct
      241 ctgcggtgca gctggtagct ggcaaggttg atcatgcgtg gggtaccggt ttcggtttgg
      301 gtcggtgtga gttgggcgag ggtccggtgt ggtcgcgctg tattgaagtg gtgcaggtaa
      361 accttgagga tccggcgtag gtgccgttcg atcacaacca ggacgcggtc gagcagttcc
      421 cggcgaagcg ttccgatcag tcgttcgcaa attgcgttcg cccggcgcgc tctgggtgga
      481 ctggtaagga tccgtatgcc ctccgcggtg aagatctcgt cgaacgcgct ggtgaaccgg
      541 gagtcacggt ctcggaggag aaagatgatg gtggcgacac ggtcatcgag gttcatcatg
      601 aggttccgag cggcttgggt ggtccacgcc cccgttggat gcgccgtcac cccggccaga
      661 tgtgcccggc gcgagccatg ctcgacggcg atcagcgcgt agattcgcct gagcaacacg
      721 gtgtccacat gcacgaagtc caccgctagg acggccttgg cctgcgcggt gagaaactgg
      781 tgccagctcg gccccgaccg gcgaggcgcg ggatcgatac cagcgtcgtg cagaatctgc
      841 cacaccgtgg aggcggcgat gtgatggccg agccggacca gttcgccctg cacccgccgg
      901 tgtccccagg agggattctc gtcggccatg cgaagcacca gtttcttgat cgctgctgtg
      961 gtcgggggac gtccaggctg gcggcgggcg gtgtagtccc acttgcgcga gatcagcttg
     1021 cggtggcagg ccaggattgt gccgggagtg acgggaaaga tcgctgccca gctgcgacgt
     1081 ggcacgagcc gagataaagc ggccagccat gctcgggcag cacacgagta acgctgttca
     1141 ggacactgca tcgagtttcc gagccccaca cggtccgggg tgtgggtggc cctcgtgcgg
     1201 ggaactctca gctgggcgcg cgttgccgag cgcttggagg ctctcatgac acagttgcat
     1261 cagattggtc ggattgttct gatggtgcag gcccccctgc tcagcgcgct gggtctggct
     1321 ggctttctcg ccgcggcgag ttcaccaacc ggtgtcggtc acgtggccgg gttcgcgttg
     1381 aataccccgc acagcgggct gctgctggcc acgggcgtgg taagtgggct tacagcgctg
     1441 tggcgccgga tcggccgcag gtgggccata atccaagcaa tcctctatat gttggtgttc
     1501 gttatcggca ccgcgcccag caacgggcgc tccgaggaca cgtggctggc gttgaacacg
     1561 ccggatcatt tcctgcactt gggcttggcc ttgctgggcg gcgttttgag tacggcgttg
     1621 ttctggcccg ctgcaccgga ccacgcgatg tcgagcattc tccccggaga tccgccccct
     1681 gctgagcaac gtccaccgac gaccgggggg acgtccgagg agacacgtaa catgatcgac
     1741 gcggaagtag ccgtcaccga gggccacgcg acgcccgagc aggcacgccg ggtccaggaa
     1801 gacgcgcagc accgtgtaga cgccgaacgt cgtcgtgcct ggaagcagtc cgagagtcaa
     1861 cctcatgatg gccattaagc ggatcatggc tagcgattgc tattgcagcg gtatgtactc
     1921 ggtcttatgg catcgacgga ttgcgtaccc atccgggtcg cgaagtcgat cgctccgcgt
     1981 tgacacagtg agcagctaac tgcctccggc tccacgggtg caatcgcagt tgcgtgccta
     2041 ggtcgagacc acaatgccat aggaaccacc tatcgcgatt ccagcctcgc ctgttgtgcg
     2101 tagcgacgac tcacggcgtg ctattcgccg tggtaaacca cggtgacacg gcgagctgct
     2161 cggtctggcc tgggagcacc tcgactggcg gaaggagcac tcgaccgagg atgtccgggt
     2221 cggccgatga gcggccgacc cggacatcgg gatcaggcga ggtcgaaccg atcgaggttc
     2281 atgacct
//
LOCUS       DASVXZ010000999         6352 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1332629, whole genome shotgun sequence.
ACCESSION   DASVXZ010000999 DASVXZ010000000
VERSION     DASVXZ010000999.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6352
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1332629"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1138)
                     /gene="tuf"
                     /locus_tag="VF788_20980"
     CDS             complement(<1..1138)
                     /gene="tuf"
                     /locus_tag="VF788_20980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005055596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEX8936603.1"
                     /translation="MAKAKFQRTKPHVNIGTIGHIDHGKTTLTAAITKVLHDKFPDVN
                     EASAFDSIDKAPEERQRGITISIAHVEYQTEKRHYAHVDCPGHADYIKNMITGAAQMD
                     GAILVVAATDGPMPQTREHVLLARQVGVPYIVVALNKADMVDDEEIMELVELEVRELL
                     SSQEYPGDDLPIVRVSALKALEGDAEWGAKLLELMDAVDDNIPEPVREIDKPFLMPIE
                     DVFTITGRGTVVTGRVERGIVKVSEEVEIIGIKEKSAKTTVTGVEMFRKLLDEGRAGD
                     NVGLLLRGIKREDVERGQVVIKPGTNTPHTQFEAQVYILSKDEGGRHTPFFNNYRPQF
                     YFRTTDVTGVVTLPEGTEMVMPGDNTEMAVELIQPIAMDEGLRFA"
     gene            complement(1238..3334)
                     /gene="fusA"
                     /locus_tag="VF788_20985"
     CDS             complement(1238..3334)
                     /gene="fusA"
                     /locus_tag="VF788_20985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009948622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEX8936604.1"
                     /translation="MAREVLTDLAKVRNIGIMAHIDAGKTTTTERVLFYTGINYKMGE
                     VHDGAATMDWMEEEQRRGITITSAATTVFWKDHQLNIIDTPGHVDFTVEVERNLRVLD
                     GAVAVFDGKEGVEPQSETVWRQADKYDVPRICFVNKMDKLGADFYFTVRTIRERLGAT
                     PLVIQLPIGSESDFQGVVDLVEMRALTWRGEVQKGEDYTVEAIPADLVEAANEYREKL
                     LEAVAEADDELMELYLGGHELSVEQIKAGIRKLTVHSQAYPVLCGSAFKNKGVQPMLD
                     AVIDYLPSPLDMPPVVGLLSDGSSATRKPSTEEPFSALAFKIAAHPFFGKLTYIRVYS
                     GRIAAGSQVINSTKERKERIGKLFQMHSNKENPVDEARAGHIYAVIGLKETTTGDTLC
                     DPQAPIILESMTFPEPVIQVAIEPKTKSDQEKLGIAIQKLAEEDPTFQVKQDDETGQT
                     IIAGMGELHLEVLVNRMRSDYKVEANIGKPQVAYRETIRKTVDKLEYTHRKQTGGSGQ
                     FARVIIKLEPLQSTDGALYEFDNKVSGGRIPREYIPSVDAGAQDAMQYGVLAGYPLVG
                     LKVTLLDGAYHEVDSSEMAFKIAGSMAFKEAARRAGPVILEPMMAVEVTTPDDYMGDV
                     IGDLNSRRGHIQQMDERSGSRIIKALVPLSEMFGYVGDLRSRTQGRANYTMQFDSYAE
                     VPASVSKEIVAKATGE"
     gene            complement(3387..3857)
                     /gene="rpsG"
                     /locus_tag="VF788_20990"
     CDS             complement(3387..3857)
                     /gene="rpsG"
                     /locus_tag="VF788_20990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006245075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEX8936605.1"
                     /translation="MPRKGPAPKRPLHSDPVYGSPVVTQLVNKVLVRGKRSVAEKIVY
                     QALEGCRDKTGTDPVVTLKRALDNVKPAIEVKSRRVGGATYQVPVEVRAVRSTTLALR
                     WLITFSRQRREKTMVDRLMNELLDASNGLGASVKRREDTHKMAESNKAFAHYRW"
     gene            complement(3857..4231)
                     /gene="rpsL"
                     /locus_tag="VF788_20995"
     CDS             complement(3857..4231)
                     /gene="rpsL"
                     /locus_tag="VF788_20995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018330902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEX8936606.1"
                     /translation="MPTIQQLVRKGREDKLAKTKTAALKGSPQRRGVCTRVYTTTPKK
                     PNSALRKVARVRLTSQVEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYKIIRGSL
                     DTQGVKGRKQARSRYGAKKEKG"
     gene            4675..5793
                     /locus_tag="VF788_21000"
     CDS             4675..5793
                     /locus_tag="VF788_21000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020673733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEX8936607.1"
                     /translation="MPGPLVGLRVIELAGIGPGPHAAMLLADLGADVVRVERPSGDKQ
                     SLQLSPGAKDQMLRGRRSVGLDLKDPSDRETLLRLVERADVLIEGLRPGVTERLGAGP
                     ADCHARNPRLVYARITGWGQDGPLAERAGHDINYIALSGALHAIGPAGGKPVPPLNLV
                     GDFGGGSMFLVLGVLAALWERERSGTGQVVDAAMVDGVSVLAQMFWSLRACGRWRDQR
                     GANLLDSGVPYYDTYACADGSYVAVGALEPRFYATLLRGLGLTEADLPDQQDPAGWPV
                     LRQRFTDAFASRSRDEWMAEFEGTDACVTPVLPFAEVPTHPHITARGTVIEIGGVTQA
                     APAPRFSRTQPERPTPPPHPGADTTAVLADWDVDVTGQ"
     gene            complement(5859..>6352)
                     /locus_tag="VF788_21005"
     CDS             complement(5859..>6352)
                     /locus_tag="VF788_21005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020417557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEX8936608.1"
                     /translation="VIVRQMLRRVTIIDSGATEFLPGGLAERGEFESENRRVVAEGAE
                     PASGRPVLMGITKASLATESWLSAASFQETTKILTDAAIQGKSDKLLGLKENVIIGKL
                     IPAGTGINRYRNIEVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGR
                     DYR"
BASE COUNT         1010 a         2090 c         1999 g         1253 t
ORIGIN      
        1 tcgcgaaccg cagaccctcg tccatggcga tcggctggat cagctcgacg gccatctccg
       61 tgttgtcacc gggcatgacc atctcggtgc cctcgggcag ggtcacgacc ccggtcacgt
      121 cggtagtgcg gaagtagaac tgcggacggt agttgttgaa gaacggcgtg tgccgcccgc
      181 cttcgtcctt ggacaggatg tagacctgag cctcgaactg cgtgtgcggg gtgttggtgc
      241 cgggcttgat gacgacctgc ccacgctcaa catcctcgcg cttgatcccc cgaagcaaca
      301 ggcccacatt gtcgccggcc cgcccttcgt cgagtagctt gcggaacatc tcgacgccgg
      361 tgacggtggt cttcgccgac ttctccttga tgccgatgat ctccacctcc tcgctcacct
      421 tgacgatgcc gcgctccacc cggccggtca ccacagtgcc gcgaccggtg atggtgaaaa
      481 cgtcttcgat cggcatgagg aacggcttgt cgatctcgcg caccggctcc gggatgttgt
      541 catccacggc gtccatcagt tccagcagct tcgcacccca ctcggcgtcg ccctccagcg
      601 ccttgagcgc tgacacgcga acgatcggca ggtcgtcacc cgggtattcc tggctggaca
      661 gcagctcccg aacctcgagc tcgacgagct ccatgatctc ttcatcgtcg accatatctg
      721 ccttgttcag cgcgacgacg atgtagggta cgccgacctg gcgggccagc aacacgtgct
      781 cgcgggtctg cggcatcgga ccatcggtgg cagccaccac caggatggcg ccgtccatct
      841 gcgccgcccc ggtaatcatg ttcttgatgt agtcggcgtg cccaggacag tcgacgtggg
      901 catagtgccg cttctcggtc tggtactcga cgtgcgcgat cgagatcgta atgccccgct
      961 gccgctcttc gggggcctta tcgatgctgt cgaacgccga agcctcgttc acgtccggga
     1021 acttgtcgtg caagaccttg gtaatagccg cagtcagcgt ggtcttgccg tggtcgatgt
     1081 gaccgatggt tccgatgttg acgtgcggct tggtccgctg gaacttcgcc ttcgccactg
     1141 gtctcgtcct cctggactcg ttctcttgat ccgctggagc cgctcaactg cgggcggtcc
     1201 tgatatagcg gcggttgtca gggttgtctg gtgctgctta ctcgcccgtc gccttcgcga
     1261 cgatctcctt ggagacgctg gccgggacct cggcatagga gtcgaactgc atcgtgtagt
     1321 tcgcccggcc ctgggtccgc gaccgcagat cgccgacgta tccgaacatc tccgacagcg
     1381 gcaccagagc tttgatgatg cgggaaccgc tgcgttcgtc catctgctgg atatgacccc
     1441 gccgggagtt gaggtcaccg atgacatcac ccatgtagtc gtcgggcgta gtcacctcga
     1501 ccgccatcat cggctccagg atcaccgggc cagcccggcg cgccgcctcc ttgaacgcca
     1561 tcgagccggc gatcttgaag gccatctcgg aggagtccac ctcgtggtag gcgccgtcca
     1621 gcagggtgac cttcaggccg accagcgggt agcccgcgag cacgccgtac tgcatggcgt
     1681 cctgcgcccc ggcatccacc gacgggatgt actccctggg gatccgtccc ccgctgacct
     1741 tgttgtcgaa ctcgtagagc gccccgtcgg tgctctgtag cggctccagc ttgatgatca
     1801 cgcgagcgaa ctgcccagaa ccacccgtct gcttgcggtg ggtgtactcg agcttgtcca
     1861 ctgtcttgcg gatcgtctcc cggtaggcga cctgcggctt gccgatgttc gcctcgacct
     1921 tgtagtcgct gcgcatccgg ttcaccagca cctcgaggtg caactcgccc atcccggcga
     1981 tgatcgtctg gccggtctcg tcatcttgct tgacctggaa ggtgggatcc tcctcggcca
     2041 gcttctggat ggcgatgccc agcttctcct gatcgctctt cgtcttgggc tcgatggcga
     2101 cctggatgac cggctccggg aaggtcatcg actccaggat gatcggtgcc tgcgggtcgc
     2161 acagcgtgtc accggtggtc gtttccttca gaccgatcac tgcgtagatg tgaccggcgc
     2221 gggcttcatc gactggattt tccttgttgg agtgcatctg gaaaagcttg ccgatgcgct
     2281 ccttgcgctc cttggtcgag ttgatcacct gtgaacctgc ggcgatccgg ccggagtaga
     2341 cccggatgta ggtcagtttc ccgaagaagg gatgcgcggc gatcttgaaa gccagcgcgg
     2401 agaacggttc ctcggtcgag ggtttgcggg tcgccgaact accgtcactc agcagaccca
     2461 ccaccggcgg catgtccagt ggcgacggta ggtagtcgat cactgcgtcc agcatcggct
     2521 gcacgccttt gttcttgaac gccgagccgc acagcaccgg ataggcctgg ctgtgcacgg
     2581 tgagcttccg gatgcccgcc ttgatctgct cgacactgag ctcgtggcca ccgaggtaga
     2641 gctccatgag ctcgtcgtcg gcttcggcga cggcctcgag aagtttctcc cggtactcgt
     2701 tcgccgcctc gaccaggtcc gccgggatcg cctcgacggt gtagtcctcg cccttctgga
     2761 cttctccacg ccaggtcaga gcgcgcatct cgaccaggtc gacaaccccc tggaagtccg
     2821 actctgagcc gatcggcagc tgaatgacca gtggggtggc cccgaggcgc tcgcggatgg
     2881 tgcgcacggt gaagtagaag tcggcgccga gcttgtccat cttgttgaca aagcagatgc
     2941 gcgggacgtc gtacttgtcg gcttgccgcc ataccgtctc ggactggggt tcgacgccct
     3001 ctttgccgtc aaagacggcg acggcaccgt cgagcacccg caggttccgc tccacctcaa
     3061 cggtgaagtc gacgtgcccc ggggtgtcga tgatgttgag ctgatggtcc ttccagaaga
     3121 cggtcgtcgc cgcggaggtg atggtgatgc cgcgcctctg ctcctcctcc atccagtcca
     3181 tcgtggcggc gccgtcgtgc acctcaccca tcttgtagtt gatcccggtg tagaacagga
     3241 cccgctcagt ggtggtggtt ttgcccgcgt cgatatgcgc catgatcccg atgttgcgga
     3301 ccttggcgag gtcggtcagc acttcacgtg ccacgagaac tcatccctat gctatctcga
     3361 ctgtgtctgt cttaaccgtg gtcgcgtcac cagcggtagt gcgcgaaagc cttgttcgac
     3421 tcggccatct tgtgggtgtc ctcgcggcgc ttcacactcg ccccgaggcc gttgctggcg
     3481 tcgagtagtt cgttcatcag acgatccacc atggtcttct ccctccgctg ccgggagaaa
     3541 gtgatcagcc agcgaagcgc gagcgtggtg gagcgcaccg cacgcacctc gacggggacc
     3601 tggtaggtcg cgccaccgac gcggcgactc ttcacctcga tggccggttt gacgttgtcc
     3661 agcgcccgct tgagagtcac cacgggatcg gtgccggtct tgtcccggca gccctccaac
     3721 gcctggtaca cgatcttctc ggcgaccgag cgcttgcccc gcacgaggac cttgttgacg
     3781 agctgggtga ccaccgggga tccatagacc gggtcggaat gcagcggccg cttcggggcg
     3841 ggacccttgc gaggcatcag cccttctcct tcttcgcacc gtaacggctg cgggcctgct
     3901 tacgaccctt cacaccctga gtatccagcg acccgcgaat gattttgtag cggacgccgg
     3961 gcaggtcctt cacacgacca ccacgcacca ggacgatgga gtgctcctgg aggttgtgac
     4021 cctcccccgg gatgtacgcc gtcacctcca cctggctggt caggcggacc cgggcgactt
     4081 tgcgcagcgc cgagttcggc ttcttcgggg tcgtcgtgta cacgcgggtg cacactccgc
     4141 gccgctgcgg gcttcccttc agcgctgctg tcttggtctt cgcgagcttg tcctcgcggc
     4201 ccttacggac cagctgctgg atggtaggca tggaccagct ttcttcgtct tgacgcgctt
     4261 gccggtatct ctggcagttg ctctctcggt ctatggatct ctatcggatg ctgccgtctt
     4321 cgtgtcgtgt tacctggtgc tactcggtca ccgatgtgct ccgtggccgg tcactccgta
     4381 tcccgcggtc gggcgtgtcg cggtgacccc agccgttcgg tcgggtacaa cccgacagga
     4441 gctgcgcggc accggtgtca catccgaacg tggtgttccg cagaacccac atcacgagcg
     4501 acacaccgcc aacagacata cagagtggcc cgaccggagt caggcacagg gaccagaata
     4561 cctgaggcct tcgcggaggg tcaaaacggg gtcaaaactc tgaccgtggg ttcgctgacc
     4621 gacccgaatc aagaacgcaa cactgcaaga gtcaacagcg cggaggtgtc atttatgccg
     4681 ggaccgttgg tcggattgcg ggtgatcgag ctggcgggga tcgggccagg cccgcacgcg
     4741 gcgatgctac tggcggatct gggagccgac gtggtgcggg tcgagcggcc ctccggagac
     4801 aagcagagct tgcagctgag cccgggtgcg aaagaccaga tgcttcgcgg gcggcgttcg
     4861 gtggggcttg atcttaaaga tccctccgat cgggagaccc tcctgcgact ggtggagcgg
     4921 gccgatgtcc tgatcgaagg actgcgtccc ggcgtcaccg agcgactggg cgccggtccg
     4981 gctgactgtc acgcccgtaa tccccggctg gtgtacgcgc ggatcaccgg atggggacag
     5041 gacggcccat tggccgagcg cgccgggcat gacatcaact acatcgcgct gtcgggtgcg
     5101 ctgcacgcga tagggcccgc gggcggcaaa ccggtgccac cgctgaatct ggtcggggac
     5161 ttcggcggtg gctcgatgtt cctggtgttg ggcgtgctgg ccgcgctatg ggagcgagag
     5221 cgctccggta ccggtcaggt cgtcgacgcc gcgatggtgg acggagtcag cgtgttggcc
     5281 cagatgttct ggtcgttgcg agcctgcggg cgctggaggg accaacgcgg tgctaacttg
     5341 ctcgactcgg gtgtccccta ctacgacacc tatgcgtgcg ccgacggctc ctacgtcgca
     5401 gtcggggcac tggaaccgcg cttctatgcc acgctgctca ggggcctggg actcaccgaa
     5461 gcggatctac ccgaccagca ggatcccgcg ggctggccgg tgttgcgcca acggttcacc
     5521 gacgcattcg ccagccgcag ccgcgacgag tggatggccg agttcgaagg aaccgacgcc
     5581 tgcgtaacac cagtcctgcc cttcgcagag gtgcccacac acccacacat cacggctcgc
     5641 ggcaccgtca tcgagatcgg cggagtcacc caggctgccc ccgccccacg cttctcccgc
     5701 acccagccag aacgcccgac cccacccccg cacccgggcg ccgacaccac cgcggtactt
     5761 gccgactggg acgtcgacgt caccgggcaa tgagcgggct cagcggggtt accggaaact
     5821 gataaccccg ctgagcccgc tggatgcgga tgaccttgtc agcggtagtc gcgaccgaag
     5881 tcgtagtcgt cgagagggac ggccgctccg gtcccggtac cgaacacgtc cggtgtgtag
     5941 tagccgtcgt cgtatgacgg gatcgcgtag gccgcggccc gagcctcctc cgtcggctgc
     6001 acctcgatgt tgcggtaccg gttgatcccg gtgccagccg ggatcaactt gccgatgatc
     6061 acattttcct tgagcccgag cagcttgtcg ctcttgccct ggatcgccgc atcggtgagg
     6121 atcttggtgg tctcctggaa ggatgccgca gacagccacg actcggtggc cagcgacgcc
     6181 ttggtgatac ccatcaggac cggacggccc gaggcaggct cagcaccctc ggcgaccacc
     6241 cgccggttct ccgactcgaa ctcgccgcgc tcggccagcc caccaggaag aaactcggta
     6301 gcacccgagt cgatgatcgt cacccggcgc agcatctgcc ggacgatgac ct
//
LOCUS       DASVXZ010001000         6345 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1334084, whole genome shotgun sequence.
ACCESSION   DASVXZ010001000 DASVXZ010000000
VERSION     DASVXZ010001000.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 6345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6345
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1334084"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..911
                     /locus_tag="VF788_21010"
     CDS             111..911
                     /locus_tag="VF788_21010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009153592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX8936609.1"
                     /translation="MSAARSRHTAPAANVDGDLSQAVLRAVIFDVDGTLADTERDGHR
                     VAFNEAFEAAGLNYCWSVDEYGELLTTTGGRRRIERYLQSRGHSSTEIASLAAQLHQD
                     KTRRFAARVRAGGMEPRPGTTELISALRAEGVATAVATTGTSDWVLPLLDILFGLTVF
                     DVVVTGSDVTDLKPDPAVYLETLGRLQVSPTEAIAVEDSANGVQAAQSAGLRCVAVVN
                     GYTRDQDLSGAIAVLDDLARPGGVSVLRGDPQLRDGLTVAALRRLLVA"
     gene            966..2318
                     /locus_tag="VF788_21015"
     CDS             966..2318
                     /locus_tag="VF788_21015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015097468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX8936610.1"
                     /translation="MSGAVRVAVIGSGPSGLYAADELSKHDAVSVDVLDRLPCPYGLL
                     RYGVAPDHLKMKSLEITLRKILERPRVRFLGGVELGSGITVDELRDYYDAVVYATGSS
                     VDRRLSIPGEDLPGSFSATEFVAWYCGHPDAEVHAFTLDAHSAVVVGVGNVAVDVARI
                     LAKTVQELGVTDMPDHVLEVLKASTVSDIHIVGRRGPAQAKFTTKELRELGELADADV
                     VVDPAELVLDQASKEVVEANKTVRRNLEVLQEWSTRSLHGRARRIHLRFLLSPVAVLG
                     TERVEAVQCERNALDGSGGVAGTGETVTVAAQLLLRSVGYRGAPLPGVPFDERSGVIP
                     HVTGRVQRNGCAASGEYVVGWIKRGPTGVIGTNKGDAKETVEQLLADLGTLPRAAHRE
                     PAAIIDMLAQRGVGVVTWAGWEAIDAAERALGAMTGRARVKIADRAALLIAATKALAG
                     "
     gene            complement(2395..3411)
                     /locus_tag="VF788_21020"
     CDS             complement(2395..3411)
                     /locus_tag="VF788_21020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013677064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEX8936611.1"
                     /translation="MAEPRDPVADLRRIAFLLERAHEQTYRIRAFRTAASVLASRDDL
                     IQRARSSTLTALTGVGEVTARCVTESLAGQPPAYLSRLEASGERPLDNAAAALRAALR
                     GDCHTHSDWSDGGSPIEEMAITARALGHEYLVLTDHSPRLTVANGLSAERLTRQLEVV
                     AACNEKLAPFRILTGIEVDILADGTLDQSEELLALLDVVVASVHSKLRMPAGEMTKRM
                     LTAVANPHVDVLGHCTGRIVTGSRQRPESQFDADAVFAACAGRGVAVEINCRPERLDP
                     PTRLLRLAVSLGCLFTIDSDAHAPGQLDWLPNGCERAAACEITADRILNTRPAPELLS
                     WTAP"
     gene            3636..4043
                     /locus_tag="VF788_21025"
     CDS             3636..4043
                     /locus_tag="VF788_21025"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family membrane protein"
                     /protein_id="HEX8936612.1"
                     /translation="MLLSRVARPLLAAVSVANGVETLLNPKPKIEATAQLLARTPAPV
                     NPALIVQAGAAVKIVGGVLMGLGWAPRIAAIALAADLIPGTVAEHPFSAAGSPDARKA
                     RQANFLSNCGLLGGLLLASTAPGGKRRRRRKRG"
     gene            4148..5248
                     /locus_tag="VF788_21030"
     CDS             4148..5248
                     /locus_tag="VF788_21030"
                     /EC_number="1.1.1.306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050607 - mycothiol-dependent formaldehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0010127 - mycothiol-dependent
                     detoxification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)mycothiol dehydrogenase"
                     /protein_id="HEX8936613.1"
                     /translation="MAQKVQGVVARKKGAPVTVETVQVPDPGPGEALVTVQACGVCYT
                     DLHYRQGRINDDFPFLLGHEAAGVVEAVGDGVTTVAPGDFVILNWRAVCGRCRACRRG
                     KPWYCFDTHNAAQPMTLSDGTALSPALGIGAFVEKTLVHSGQCTKVNPAVRPEVAGLL
                     GCGVMAGLGAAMNTGGVTRGDSVAVIGCGGVGDAAIAGARLAGATTIIGVDIDPGKLR
                     WATELGATHTVDARETDVVEAVRECTGGFGADVVIDAVGRPETWQQAFFARDLAGTLV
                     LVGVPSPDMRVPDIPLLEIFGRGGALKSSWYGDCLPERDFPMLVDLHLQGRLPLEKFV
                     SETIGLNDIEAAFEKMQNGEVLRSVVLLGSTT"
     gene            5319..5942
                     /locus_tag="VF788_21035"
     CDS             5319..5942
                     /locus_tag="VF788_21035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019045936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX8936614.1"
                     /translation="MISRLVTSGTFSLDGGTWEVDNNVWLIGDEREVIVVDAAHDADA
                     IAAAVGDRRVLSILCTHAHDDHVSAAPELSRKLDAPVLLHPAEHVLWRLAHPDIPPPE
                     AELADGDTVHVAGTTLQVLHTPGHSPGSSCLYAPELNTLFSGDTLFQGGPGATGRSYS
                     DFDEIIASIQTRLLTLPADTEVRTGHGDSTTIGQEAEHVGEWLARGH"
     gene            complement(5989..>6345)
                     /locus_tag="VF788_21040"
     CDS             complement(5989..>6345)
                     /locus_tag="VF788_21040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004559781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX8936615.1"
                     /translation="ANYDVVNKVGTYPLALAAARAGIPFVVAAPAATIDRSTPTGAAV
                     TIEYRDPDEVLLVGGWRMAPDSSGAINPAFDVTPADLVTAIVTESRVIEPSRAAEPAG
                     VMHAVDVPAMRMVGAS"
BASE COUNT         1101 a         2011 c         2185 g         1048 t
ORIGIN      
        1 agccgggaac ggtcgcctgg acagcctcga gacaccaagt tcgtgcgggc ggagttccat
       61 ggagctcgag gccgacggtc cagaccgacg gtcagaacgg actagcgctc atgtcagcgg
      121 cccgatctcg ccacaccgca ccagccgcga acgtcgatgg cgacttgtca caggccgtac
      181 tgcgagcggt catcttcgat gtagatggga cgctagccga taccgaacga gacggtcatc
      241 gggtcgcatt caatgaagcc ttcgaagcgg cgggtctgaa ttactgctgg agcgtcgacg
      301 aatatggtga actgctcacc acgaccggtg gtcgtcgacg catcgaacgg tacctccaat
      361 cccgggggca ctcctccacc gaaatcgcct ccctagcggc gcaactacat caggacaaaa
      421 cccgtcgctt tgcggcgcgg gtccgtgcgg gtggaatgga acctcggcca ggaacgacag
      481 agctgatctc tgcgctacgc gccgaaggtg tggccaccgc ggtggccacc acgggaacca
      541 gcgattgggt cctgccgtta ctcgatatcc ttttcggact tactgtattt gacgtcgtcg
      601 tcaccggctc agacgttact gatctcaagc cagatccggc agtgtacctg gagaccctgg
      661 gccgcctgca ggtgagtccg accgaggcga tcgctgtgga ggactcggcg aatggcgtgc
      721 aagccgcgca gtcggcgggg ttgcggtgtg tggcagtagt caacgggtac acccgcgatc
      781 aggatctgtc cggcgcgatc gccgtgctcg acgacctggc ccgcccaggt ggagtatcag
      841 ttctccgtgg ggacccgcag ctacgtgacg ggttgaccgt agcggcgttg cgccgcctgc
      901 tcgtggcgta acgtcgagcg ggcgaggttt tcagcatccg ctgttatcga ggaggtgcat
      961 caggcgtgtc cggggcggtt cgggtcgcgg tcatcggctc cggtccttcc gggctgtatg
     1021 ccgccgatga gctgagtaag cacgacgcgg tgtcggtgga tgtcctggac cggctgccat
     1081 gcccgtacgg actgttgcgt tatggggtag cgccggacca tctgaagatg aagtcgctgg
     1141 aaatcacgct gcgcaagatc ctcgagcggc ctcgcgtgcg gtttctcggt ggggtggaac
     1201 tgggttccgg catcaccgtg gacgagctgc gcgactacta cgacgcggtc gtctacgcga
     1261 ccggctcgtc ggtggatcgc cggctgtcca ttcccggcga ggacctgccc ggcagcttct
     1321 cggcaaccga attcgtcgcc tggtactgcg gccacccgga cgccgaagtg cacgcgttca
     1381 ccttggacgc gcacagcgcg gtggtggttg gggtcggcaa tgtcgcggtg gacgtcgccc
     1441 gcattcttgc caagaccgtc caggagctgg gcgtcaccga catgcccgat cacgtgctcg
     1501 aggtcctcaa ggcgagcact gtcagcgata tccacattgt cggcaggcgc ggaccagcgc
     1561 aggccaaatt caccaccaag gagctacgcg agctaggtga gctggccgat gccgacgtcg
     1621 tggtcgaccc cgccgagctg gtgctcgatc aggccagtaa agaagtcgtc gaggccaata
     1681 agaccgtacg tcgcaacctt gaggtgctgc aggagtggtc gactcggtcg ctgcatggcc
     1741 gggcgcgacg gattcacctg cggttcctcc tttccccggt ggcggtgctc ggcaccgagc
     1801 gggtggaagc ggtgcagtgc gagcggaacg ccctggacgg ctccggtgga gtggccggca
     1861 ccggcgagac ggtgactgtg gcggcgcagc tgctactacg ctcggtggga taccgcggcg
     1921 cgccgctgcc cggcgtccca tttgacgagc ggtcgggcgt gattccccac gtgacggggc
     1981 gggtccagcg caacggctgc gccgcaagcg gtgagtacgt ggtcggctgg atcaaacgcg
     2041 ggcccactgg agtgatcggc accaataagg gcgacgccaa ggagaccgtc gagcagctgc
     2101 tggcggacct cggcacattg ccccgcgcgg cacatcgcga acccgcggca atcatcgaca
     2161 tgctcgccca acggggggtt ggagtcgtca cctgggctgg ctgggaggcg atcgacgctg
     2221 ccgagcgggc cctcggggct atgactggcc gtgcccgcgt caagatcgcc gaccgggccg
     2281 cgctgctgat cgctgctact aaggcgctgg ccggctgagt tctggcgtca acaggcgcag
     2341 atgagcgaca caccggcacg aggggacgac acgccgggga agagatcggc tgggctaggg
     2401 ggcggtccag gacagaagtt cgggcgcagg cctggtgttg aggatccggt cggcggttat
     2461 ttcgcaggca gcagcgcgct cgcagccgtt gggtaaccag tcgagttgtc cgggggcgtg
     2521 cgcgtctgag tcgatggtga acaggcaacc gagcgaaacg gcgaggcgta gcaaccgggt
     2581 gggcgggtcc agccgctcag ggcgacaatt gatctccacc gcgacgccac ggcccgcgca
     2641 ggcagcgaac acggcatcgg cgtcgaactg cgactccgga cgctggcggg aacccgttac
     2701 tatccggccg gtgcaatgtc cgagcacatc gacatgcggg ttggccaccg cggtgagcat
     2761 ccgtttggtc atctcgccgg ccggcattcg cagcttcgag tgcaccgagg cgacgacaac
     2821 gtccagtaac gccagtaact cttcggactg atccagcgtg ccgtcggcaa ggatgtccac
     2881 ctcgatgccg gtgaggatcc tgaaaggcgc aagtttttcg ttacacgcgg ccacgacctc
     2941 gagctgacgc gtcagccgct cggcggaaag cccattggcc accgtgaggc gcggtgagtg
     3001 gtcggtcagg acgagatact cgtgaccgag tgcgcgggca gtgatcgcca tctcctcgat
     3061 tggtgatcct ccgtcggacc agtcggagtg ggtgtggcaa tcgccgcgca atgccgctcg
     3121 cagcgccgcg gcggcgttat ccaatggcct ttcaccgctc gcttccagcc tgctcagata
     3181 ggccggcggt tgcccggcga gggattcagt gacgcagcgg gcagtgacct cgccaacgcc
     3241 ggtcaatgct gtcaaggtgc tcgatctggc acgctgtatc aggtcgtccc gcgaagcgag
     3301 taccgacgct gcggtacgga atgcccgaat ccgataggtc tgctcatgtg ctcgctccag
     3361 caggaaggcg atccgccgta agtccgcgac agggtcccgc ggttcggcca cgttgccctc
     3421 caactgataa atgcaccacc gacacgatcc tcccaccgca gcgtacgtag cgccgttcga
     3481 ttgacccacc gacccaacca gtggccgacg agattgctcc gcgcccagat gaaccgcggg
     3541 cgtggataaa cctatgcccc ggatgggtgg cttccctctc gcagcggcgc aggaaggcta
     3601 cggtgcaaaa gcgaacagct cagagaggag ccgccgtgtt gctcagccgc gttgcccgtc
     3661 cactgcttgc ggccgtatcg gtcgcgaatg gcgtcgagac cctgctcaac ccgaaaccga
     3721 agatcgaggc gaccgcacaa ctgctggcaa ggacacctgc cccggtcaat ccggcattga
     3781 tcgtgcaagc gggtgctgcg gtgaagattg tcggcggggt gctgatgggg ctcgggtggg
     3841 cgccccggat cgcggcgatc gccctcgccg cggacctgat cccgggcacc gtggccgagc
     3901 acccgttctc ggccgccggc tcccccgacg cccggaaggc acgccaggcg aacttcttgt
     3961 ccaactgcgg cctgctcggt ggtttgctgc tggcgagcac cgcccctggc ggcaagcgca
     4021 ggcgcaggcg taagcgcggc taggcgctag agaagattac tccaaccaca cgtccgacac
     4081 ggaaacagcc ggacgttcgt ggctggctgg tcgctgtcaa ggtgagcacg caccacggga
     4141 ggccgcaatg gcccagaagg tccaaggagt agtggcccgg aaaaagggcg cgccggtcac
     4201 ggtggagacc gtgcaggtac cggatcccgg gccgggtgag gcgctggtca cagtgcaggc
     4261 atgtggggtg tgctacaccg acctgcacta ccgccagggc cggattaacg acgattttcc
     4321 gttcctgctc gggcacgaag ccgctggtgt ggtggaagcc gtgggtgacg gagtcactac
     4381 cgtggccccc ggtgacttcg tcatcctcaa ctggcgcgcg gtatgcggac gctgccgcgc
     4441 ctgccgccga ggcaaaccct ggtactgctt cgacacccac aacgccgctc agcccatgac
     4501 gctgtctgac ggcaccgcgc tctcgcccgc gctgggcatt ggagccttcg tggagaagac
     4561 gctggtccac agcggccagt gcaccaaggt caaccccgcg gtcaggccgg aggttgccgg
     4621 gctgctcggc tgcggcgtga tggcagggct cggcgcggca atgaataccg gcggtgtcac
     4681 ccggggtgac tcggtagcgg tgatcggatg cggaggggta ggtgatgccg ccatcgccgg
     4741 agcgcggcta gccggcgcga ccacgatcat cggtgtcgac atcgacccgg gcaagctgcg
     4801 gtgggccacc gagctgggcg cgacgcacac cgtcgacgcc cgagaaaccg atgtcgtcga
     4861 ggcggtgcgg gaatgcaccg gaggtttcgg ggctgacgtg gtgatcgacg ctgtgggccg
     4921 gccggagacc tggcaacaag catttttcgc ccgcgacctc gcgggcaccc tcgtgctggt
     4981 cggcgtgccg agcccggaca tgagggtgcc cgacatcccg ctgttggaga tcttcgggcg
     5041 cggcggggcg ctcaagtctt cctggtatgg cgactgcctg cccgagcgag acttcccgat
     5101 gctggtagat ctgcacctgc agggacggct accgctggag aagttcgtct ccgagacgat
     5161 cggcctgaat gatatcgagg cggccttcga gaaaatgcag aacggcgagg tgctgcggag
     5221 tgtggtgctg cttggcagca ccacgtgagt gactgacagt tttatgctct gaaaggcccc
     5281 gagcggcact gccatagcac cgaaaggcac tggcgagcat gatttcacgc ctggttacct
     5341 cgggcacctt cagcctggac ggtgggacct gggaggtgga caacaacgtt tggctgatcg
     5401 gcgacgaacg agaggtgatc gtcgtcgatg ccgcacacga cgcggatgcg atcgccgccg
     5461 cggtgggcga ccggcgggtg ttgagcattc tgtgcacgca cgcgcacgat gatcatgtca
     5521 gtgccgcgcc ggagctgtcg cggaagctgg acgcaccggt actgctccac cccgcggagc
     5581 acgtgctgtg gcggctcgca catcctgaca tcccacctcc cgaggccgag ctcgccgatg
     5641 gcgacacagt gcacgtcgcc ggtaccacgc tgcaggtgtt acacaccccc gggcactccc
     5701 ccgggtcgag ctgcctttat gccccggagc tgaacaccct cttcagcggg gacacgctct
     5761 tccagggagg cccgggcgcc accgggcggt cctattcgga cttcgacgag atcatcgcct
     5821 cgatccagac gagactgctg acactgcccg ccgacactga ggtgcgaacc gggcacggtg
     5881 actccaccac catcggtcag gaagccgagc atgtcggcga gtggctcgcg cggggacact
     5941 gaaacatcac ggcggattcc cccgccgggc gcgacaccct gtaaccgctc aagacgctcc
     6001 gaccatccgc atagcgggga catccaccgc gtgcatcacg cccgccggct cagccgcccg
     6061 agacggctcg atgactcggg actcggtgac gatggcggtg accaggtcgg ccggggtgac
     6121 atcgaaggcg ggattgatgg cgccggagga gtccggtgcc atccgccatc cgcccaccag
     6181 cagtacctca tcggggtccc ggtactcgat ggtcaccgct gctccggtgg gagtgctgcg
     6241 gtcgatcgtg gcggccgggg cagcgaccac aaacgggatc cccgctctgg ccgcggccag
     6301 ggccagcggg taagtgccta ccttgttcac cacgtcgtaa ttggc
//
LOCUS       DASVXZ010001001        13736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Pseudonocardiaceae bacterium isolate SMAG_U2588
            k141_1338336, whole genome shotgun sequence.
ACCESSION   DASVXZ010001001 DASVXZ010000000
VERSION     DASVXZ010001001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37960242
            Sequence Read Archive: SRR10127270
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pseudonocardiaceae bacterium (soil metagenome)
  ORGANISM  Pseudonocardiaceae bacterium
            Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
            Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 13736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/12/2024 03:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,170
            Genes (coding)                    :: 4,035
            CDSs (with protein)               :: 4,035
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 57 of 135
            Pseudo Genes (incomplete)         :: 98 of 135
            Pseudo Genes (internal stop)      :: 14 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13736
                     /organism="Pseudonocardiaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1338336"
                     /isolate="SMAG_U2588"
                     /isolation_source="soil"
                     /db_xref="taxon:1873463"
                     /environmental_sample
                     /country="Mexico"
                     /lat_lon="21.766 N 100.163 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VF788_21045"
     CDS             complement(<1..763)
                     /locus_tag="VF788_21045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007034060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX8936616.1"
                     /translation="MTTVGVRTEDRSASEVLAWSRDLVEPAVRTAVGTLPSSMRHIAG
                     YHLGWWDAHGHPIRVSGGKAIRPALALLSAQAVGSTAATAVPAAAAVELVHNHSLLHD
                     DVMDGDLTRRHRPTAWSVFGVNDAILAGDALLVLALDVVAGSGHPAAADVIRMLSAAV
                     QDLLDGQSADLSFEHRAEVELTECVRMAQRKTAALLGCACAVGATFGGGRPEQVAHLR
                     DFGMHLGLAFQHVDDLLGIWGDPAVTGKPVHSDLRS"
     gene            complement(779..2194)
                     /locus_tag="VF788_21050"
     CDS             complement(779..2194)
                     /locus_tag="VF788_21050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020423482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0140737 - encapsulin nanocompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 2B encapsulin nanocompartment shell
                     protein"
                     /protein_id="HEX8936617.1"
                     /translation="MTVTDPNVDVAEQPQSGQPQLSLSTDAARNLATTTKSVPQMQEI
                     TPRWLLRVLPWVEASGGAFRVNRRLTYTVGDGQVTFDTSGAEVRIVPGELCELPVLRG
                     FDDSEVLRALADQCEQREFEAGESLVQAGQAADHIFFIAHGKVNKIGPGKYGERTVLG
                     VLADGDYFGDQELVESQDSWTFTITAVTACTVLTLPQQAFEEVVGRSGALQAHVERFR
                     ARGKQPQNKHGEAAIALSAGHVGEPELAGTFVDYETIPREYELSVAQTVLRVHTRVAD
                     LYSTPMDQTEQQLRLTIEALREKQEDELINNTDFGLLHNVDFRQRIHSRTGPPTPDDM
                     DALLSRRRKTRFFLAHPQTIAAFGRECNRRGIYPPSAEVDGHQVSAWREVPIFPCNKI
                     PITEYRTSSILAMRTGLEDEGVIGLYQTGIPDEVEPGLNVRFMGIDDKAIISYLVSAY
                     YSAAILVPNALGVLENVEIGH"
     gene            complement(2272..3132)
                     /locus_tag="VF788_21055"
     CDS             complement(2272..3132)
                     /locus_tag="VF788_21055"
                     /EC_number="2.1.1.255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007032723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042214 - terpene metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranyl diphosphate 2-C-methyltransferase"
                     /protein_id="HEX8936618.1"
                     /translation="MTMTTPTVANVLHTAYQKSVASYWNNERHPVNLLLGDIDGLYHH
                     HYGIGDYDPSVLKGPEDTRDDRIIAEMHRLETTQAKVLLDHLGDISSSDHLLDAGCGR
                     GGTSLMAHQRFGAQVDGVSISEQQVQFANDQARQRGVADKVRFHFRNMLDTGFETGSL
                     RGIWNNESTMYVDLFELFAEHARQLEFGGRYVCITGCYNDVTGGRSRAVSRIDEHYIC
                     NIHPRSDYFRALAANNLIPINVIDLTADTIPYWELRAKSSVATGIEQPFLTAYREGSF
                     HYLLIAADRI"
     gene            complement(3199..4422)
                     /locus_tag="VF788_21060"
     CDS             complement(3199..4422)
                     /locus_tag="VF788_21060"
                     /inference="COORDINATES: protein motif:HMM:NF041167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0140737 - encapsulin nanocompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 2 encapsulin nanocompartment cargo
                     protein terpene cyclase"
                     /protein_id="HEX8936619.1"
                     /translation="MSVLSRASAPAANHDLASVVVALLSSPQRPAPKDLPQSFGDLPP
                     GDHNQPARSLLDRLITGPSGLGTSAARIHQESPAPSETIAATGDEAGSELYCPPAVRD
                     DKALGEAVNDRLVAWAEQVGIYPGQLYRVREANFGRLMMLTHPATDDPDRLLAASKCV
                     LAEWATDDHFLDEESLGADATLIGSRLGISYAAIDPVDLPVCYAPHLDKALSEEPVAV
                     AYRSAFEHLAQYATATQVARLRHELAVMYLAYNHEANWRSTGRIPPVWEYLTHRHENS
                     FLPPMVLVDPVAGYELPAFEFADRRVRRVFCLAGSASVILNDLYSMGKETDTDFDLPK
                     VIAAEEKCSTEEAIQRTVAIHNELMHTFVEEATALSQLGSLALRRFLADIWAWLGGNR
                     EWHSTTERYHGASNA"
     gene            complement(4463..6715)
                     /locus_tag="VF788_21065"
     CDS             complement(4463..6715)
                     /locus_tag="VF788_21065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020667245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="germacradienol/geosmin synthase"
                     /protein_id="HEX8936620.1"
                     /translation="MQPYELPDFYMPYPARLNPHLDVARAHTKSWAREMGILGASPDA
                     PEANIWDEAKFDSMDFALLCAYTHPDAPSSELDLVTDWYVWVFYFDDHFLEVYKRTQD
                     QAGAKEYLDRLPAFMPADLASSPTAPTNPVERGLLDLWARTIPMRSLDWRRRFFESTK
                     NLLYESTWELSNISGNRIPNPIEYIEVRRKVGGAPWSADLVEHAAFVEIPARVADSRP
                     IRVLKDSFADGVHLRNDLFSYQRETQHEGEVNNCVLVLERFLGVSPQRAADLTNDILT
                     SRLQQFENTALTELPSLFEECDLNPPERESALLFVKGLQDWQSGGHEWHMRSSRYMND
                     NATAEPSIAQRLLSGPRGLGTSAAQIKLSPDGLGLQRVKYHTHSPYLLVGPTKLPDFY
                     MPYTARVNGHLERSRQYCITWARQMGMLELLPDGIGIWDEETLALFDFANCAARIHPD
                     ASGPQLDLSSAWLTWGTYGDDYFPAVFGPTRNIAAAKVFNARLPAFMPLDCADTPPPA
                     NAVEAGLADLWIRTAASMTTAQRRQFRHAVESMTTSWLWELANHTQHRIPDPVDYIEM
                     RRHTFGSDMTMSLARITKTGAVPAEIFRTRTMLGLENSAVNYACFTNDIFSYQKEIEF
                     EGELHNLVLIAQKFLDIDREQAVGVVNDLMTSRMRQFEHIIATELHLIVDDFQLDAAA
                     RETLDGYVVGLQDWMAGILDWHMLCGRYPEPALRRRYRAGPYRTTSQRLGGPTGLGTS
                     ATVISGLRSA"
     gene            complement(6757..8280)
                     /locus_tag="VF788_21070"
     CDS             complement(6757..8280)
                     /locus_tag="VF788_21070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020666522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0140737 - encapsulin nanocompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 2B encapsulin nanocompartment shell
                     protein"
                     /protein_id="HEX8936621.1"
                     /translation="MTESVQVESGVNGQQPQNGQRPQLTLATDAARNLATTTKSVPQM
                     QEITSRWLLRVLPWVEAAGGTFRVNRRASYTVGDGRVTFEMNGDAQIKVRPDELRELP
                     MLKDFTEHPDTLTDLANQFEQRDIERGSTLVREGDPANELFVIAHGRVNVIGPGKYDD
                     RVVLGVLSDGEYFGDRQLVQRDDETHDNWPYTVTAVTPCKVMVISEQAFYRVVDQSDP
                     LRETIRRFRATLDQPQNEHGEALIELSAHHPQEYPLDGTYVDYELSPREYQLSVAQTV
                     LRVHTRVADLYNNPMNQFEEQLRLTIEALREKQEHELINNKDFGLLHQTAFEQRINTR
                     TGPPTPDDLDGLLATVWKEPDVLLAHPRAIAAFGRECSRRGIYPHNVDLGGHKMPAWR
                     GIPLLPCSKIPVDKYQTSSILLMRTGLEKQGVIGLHQTGLPDEVQPGLNVRFMSIDEK
                     AIMRYLVSAYYSAAIMVPDAIGILENVEVAHYDDLPAPDQPSESPEPAKPSSTKKPK"
     gene            complement(8432..11332)
                     /locus_tag="VF788_21075"
     CDS             complement(8432..11332)
                     /locus_tag="VF788_21075"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX8936622.1"
                     /translation="MGSNRLLVPGRVRELAVLRAEQQRSTLGELRVALVLGDPGLGKT
                     RLVAELVPHGHEFAGGLIAHSCLFKGMPSFGPWADALDLRADGPDTDRVCRACGSGVG
                     GLPPLVRRAGIAHDAASCAEALRYHFVEWMPGLLATASAERPIVVVLDDAHRSDDAVW
                     AMLLRLARDCPSSRLFVLATARPAELARNRTALAALHALEQDGRVRRIALAPFSRQDI
                     RELTADTLRQDRVPSPLVDWLMARAQGNPRFAVGLLEALVECDADFQAPALGRVPERL
                     ARWIRTELAQLDPSALGLLELLAVAGDAVDPNDLSRITSSPIEHVAVALEQLARAGTV
                     VEQQSEGSLGYTLAHVLTREVLYTDIGAARRRVMHRQVAATLLESRQPEAAASHYIRA
                     AQTGDGEAIVALIEMVRRAHQRGLSSLEWQTVSTLRDLLPAGDERWCEVFDALCQRAN
                     WGIVDRTEHYVAETAAVQRMRPLLPGVGDLQRQADVRLWLAGLFAYGAGDVDAGEREC
                     RQAFALSQQAGRHVAARAAAIELAKIRGWAGDLRGEEVAARALLSEAEGDGDQRGIAE
                     ALGALGHTLGWQGRFDAAETVLSRSVELATAAAHFPWMSQSLALLASLDACRGHLVSA
                     RTRCAQAAASSPPNDPMIGRCSALIELLAGDLTMAQAHTQQAERHEVEDRSRVPVRLA
                     GRAAMAAAEQGDLTEARRHLHGMTCIDTGTLGILEPLYWWAEGVVARVEGRFTTAAAA
                     LQRAVDRYSAMGAYALRGFVLADLAEATVVAGDGDTVASVEQWAEDNARCTGAPIHQT
                     LHLLVTAWALIGRGHHDAAARAALRAVEGFSARGYVLLAARARVTYAEAIQRSDRGAA
                     AEALRAAAVAFDECGATMRHQQARSQLRQLGSDGRCTAPNQPGPVTLTRRERQVAELA
                     AGGYTAPQIAARLHIGVRTVETHLARSYPKLGITGKQQLVHHAAELGFTPGP"
     gene            complement(11780..13090)
                     /gene="hisS"
                     /locus_tag="VF788_21080"
     CDS             complement(11780..13090)
                     /gene="hisS"
                     /locus_tag="VF788_21080"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003064038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEX8936623.1"
                     /translation="MADYLPTAPYRGTRDFLPPEMSVRTQVFESLYDVIERYGYVRYD
                     GPILEPVEIYEAKSSREIVEQQLYTLTDRGDRRLALRPEMTPSVARIIAGNAGKLQFP
                     VRWYSHPNCHRYERPQRGRVREHWQINVDVFGSDSPACEIEIFELIHDMMAALKASPD
                     MWVLRVSDRVLLNAILTTMVEVPADLIRDVSALIDRWEKYPQDRLGQEATELGLTDKQ
                     FHRLGEILGAGDALLDELPSEAREQSVLLRVLSSSARDLVAFDPMIVRGFDYYTSTVF
                     EVFDTSPENRRSLFGGGRYSNLVGLFSAAQIPGIGFGMGDVTLMDFLGTHDLLPAPRS
                     EVDVAVIPVVPTLAEAARQLARDLRRAGLRTSTPLESRKLGKELARANKAGAHIAVII
                     GADEWAAGTVTIRNMVTGDQQQAPASAAPSVVTAMLGCPRDPGD"
     gene            complement(13146..>13736)
                     /locus_tag="VF788_21085"
     CDS             complement(13146..>13736)
                     /locus_tag="VF788_21085"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HEX8936624.1"
                     /translation="WPLQQVRAVLEVAARHRLRTHLDGARLMNAVVASGVPAAEWASG
                     FDTAWIDFTKGLGAPVGAVLAGSTELIEEAWRYKQMMGGALRQAGIVAAGCLWALDHH
                     VHRLAEDHANARLLAAGLAGLPGITLDPETVETNIVVFGLADAEKFCARLEAEHGVRM
                     GALGPDLIRAVAHHDVTTAGVRHAVQAVAAVLRAAR"
BASE COUNT         2425 a         4426 c         4324 g         2561 t
ORIGIN      
        1 ggctgcgcag gtccgaatgg accggtttac cagtcaccgc cggatctccc cagatcccca
       61 gcagatcgtc cacgtgctga aacgccaaac ctagatgcat cccgaagtcg cgcaggtgcg
      121 cgacctgttc tgggcggcca cctccgaagg tggcgcccac cgcgcacgcg caccccagca
      181 gggccgcagt ctttcgctgg gccatgcgca cgcactcggt cagctcgact tccgcgcggt
      241 gctcgaacga cagatccgcg ctctggccgt ccagcagatc ctggaccgcg gcgctgagca
      301 tccggatcac gtccgccgca gcggggtgcc cactgccggc gactacgtcc aacgccaaga
      361 ccagcagtgc atccccggcc aggatcgcgt cattgacccc gaacacactc cacgcggtgg
      421 ggcggtgccg gcgggtcagg tcaccgtcca tcacgtcgtc gtgcagcagc gagtgattgt
      481 gcaccagttc caccgcggcc gcggccggca ccgcggtggc cgccgtactg ccaacagcct
      541 gggcactgag caatgcgagc gctgggcgga tcgccttacc tccgctcacc cgtatggggt
      601 ggccgtgtgc gtcccaccac ccgaggtggt aaccagcgat gtgccgcatc gaggacggca
      661 gcgtgccgac cgcggttcgc acggcgggtt cgacgaggtc gcggctccac gcgagcacct
      721 cggatgccga ccggtcttcg gtcctcacgc ccacggtggt cacggttttg cacccccctt
      781 aatggccgat ttcgacgttc tccaggactc ccagtgcatt aggaaccagg atggccgccg
      841 agtagtacgc gctgaccagg taggaaatga ttgctttgtc gtcgattccc atgaagcgga
      901 cattgagccc gggctcgact tcatccggaa tcccggtctg gtacagaccg atcacgcctt
      961 cgtcttccag gccggtgcgc attgcgagga tcgagctggt ccggtactcg gtgatgggga
     1021 tcttgttgca ggggaagatc ggcacttccc gccacgcact cacctggtga ccatccacct
     1081 cggcgctcgg cgggtagatg ccccggcggt tacattcccg gccgaacgcg gcgatcgtct
     1141 gcggatgagc caggaagaac cgcgtctttc gccggcggct gagcaatgcg tccatgtcgt
     1201 ccggggtggg gggcccggtg cggctgtgga tgcgctgccg gaaatcgaca ttgtggagca
     1261 atccgaaatc cgtgttattg atcagctcat cttcttgctt ttcccgtagg gcctctatgg
     1321 tcaaccgcag ctgctgttcg gtctgatcca tcggagtgct gtacaggtct gccacccgcg
     1381 tgtgcacccg cagcacggtc tgggccacgc tgagctcgta ttcacggggg atggtttcgt
     1441 agtcgacgaa tgtgcccgcc agctcgggtt cccctacgtg gcccgcactc agcgcaatgg
     1501 ctgcctcacc gtgcttattc tgcggttgct taccccgagc ccggaatcgc tcgacgtgcg
     1561 cctgcaatgc gccggaccgg ccgaccacct cctcgaacgc ttgctggggc aaggtcagca
     1621 cggtgcaggc agtaaccgcc gtgatggtga atgtccagct gtcttgggac tcgaccaact
     1681 cctgatcacc gaaatagtca ccgtcggcga ggacacccag gacggtccgt tccccgtact
     1741 tccccggacc gatcttgtta accttgccgt gggcgatgaa gaagatgtga tcggcggctt
     1801 gacctgcctg taccagtgac tcaccggcct cgaactcccg ctgctcgcat tgatcggcca
     1861 acgcgcgaag tacctcagag tcatcgaaac ctcgcagtac cggtaactcg cacaattccc
     1921 cgggaacaat ccgtacctcg gcgccgctcg tgtcgaacgt tacctggccg tcgcccaccg
     1981 tatatgtcaa gcggcggttg actcggaacg caccgcccga ggcctccacc cacggcaata
     2041 cccgcagcag ccagcgcggc gtgatctcct gcatctgtgg cacggacttc gtcgtcgtcg
     2101 ccagattgcg ggccgcgtcg gtgctgaggc ttaattgagg ctggcccgat tgcggctgtt
     2161 cagcaacatc gacgttggga tccgtcacgg tcaccacgca cctcatcaat ctcgatacgt
     2221 tcaggtatcg acgcgtctgc tacgagcacc cggaggtggt gccggtagaa atcagatccg
     2281 atcggcggcg atgagcaggt agtggaaact gccctcgcgg tacgcggtca ggaatggttg
     2341 ctctatcccg gtggccaccg aggacttcgc cctcagttcc cagtacggga tggtgtcggc
     2401 ggtgagatcg atgacgttga tcgggatgag gttattggct gccagcgccc tgaagtagtc
     2461 gctacggggg tggatgttgc agatgtagtg ctcgtcgatc ctactgaccg ctctggatcg
     2521 cccgcccgtc acatcgttat agcaaccggt gatgcaaacg tagcgaccac cgaactccag
     2581 ttggcgggcg tgctcggcga agagctcgaa caagtccacg tacatggtgc tttcgttgtt
     2641 ccagattccc cggagcgatc cggtttcgaa accggtgtcc aacatgtttc ggaagtggaa
     2701 cctcacctta tcggccacgc ctcgctgcct ggcctggtcg ttggcgaact gtacctgttg
     2761 ctccgagatc gacactccgt cgacctgagc gccgaagcgt tggtgggcca tcaagctggt
     2821 accgccgcgg ccgcacccgg catccaaaag gtgatcactg gacgagatat cgcctaggtg
     2881 gtcaaggagc accttggcct gggtggtctc caaccggtgc atctcggcga tgatccgatc
     2941 gtcgcgggtg tcctcggggc ctttcagcac ggacgggtca tagtcgccga tcccgtagtg
     3001 gtggtggtat aggccgtcga tatcaccgag cagcaggttg accgggtgcc tttcattgtt
     3061 ccagtacgac gccacagatt tctggtaggc agtgtgaagt acattggcga cggtaggggt
     3121 ggtcatggtc atgtcgacct ccttctgctt gtcagcccga acagccggcg ggtgccgagg
     3181 ccgggttctc cgaaccgctt acgcattgct cgcgccgtga tatcgctcgg tggtgctgtg
     3241 ccattcgcga ttgccgccga gccaggccca tatgtcggcc aggaaacgcc gcagcgcaag
     3301 cgagcccagc tggctgaggg cggtcgcttc ctcgacgaaa gtgtgcatca gctcgttatg
     3361 gatcgccacc gtgcgctgga tcgcctcctc tgtagagcac ttctcctcgg ccgcgatcac
     3421 cttgggcaga tcgaagtctg tatccgtttc cttacccatc gaatacaaat cgttcagaat
     3481 cacgctcgca ctgccagcca agcaaaacac ccggcgcacc cgccgatcgg cgaactcgaa
     3541 ggcgggaagc tcgtagccgg caaccggatc gaccagcacc atcggtggca gaaagctgtt
     3601 ttcatgccgg tgcgtgagat actcccagac tggtgggatt cgtcctgtgc tgcgccagtt
     3661 cgcctcatgg ttgtaagcca ggtacatgac cgctagttcg tggcgcagcc gggcgacttg
     3721 cgtcgctgtg gcgtactggg cgagatgctc gaacgccgag cgatacgcga ccgcgacggg
     3781 ctcctccgag agtgccttgt cgaggtgggg cgcgtaacag accgggagat ccaccgggtc
     3841 gatggccgcg taggagatcc ctagccgcga gccgatcagc gtcgcgtcgg cgcccaggga
     3901 ttcctcgtcg aggaagtggt cgtcggtggc ccactccgcc aggacgcact tcgatgccgc
     3961 cagcaaccgg tcggggtcat cggtggccgg atgggtgagc atcatcaggc ggccgaaatt
     4021 ggcttcccgg acacgataaa gctgtccggg atagataccg acctgctcgg cccaggcgac
     4081 caggcggtcg ttgaccgcct caccgagtgc cttgtcgtca cggaccgccg gtgggcagta
     4141 cagctcggaa cccgcctcat ccccagtggc cgcaatcgtc tcgctgggcg cggggctctc
     4201 ctgatgaatc cgggccgccg aggtacccag cccgctggga ccggtgatga gccggtccaa
     4261 caacgacctg gctggctggt tgtgatcccc gggcggcaga tctccgaagg actgcggaag
     4321 gtcctttggt gccgggcgct gcgggctgga caagagggcg accaccacgc tcgccaggtc
     4381 gtggttggcc gcaggcgcgg atgcccgaga cagcacagac accggtcctc ctttgctcgt
     4441 ggttggtgac gccggaactc cctcatgcgc tgcgcaagcc gctgatgaca gttgcggaag
     4501 tacccagccc ggtgggacca ccaagtcgct gcgacgttgt tcgataaggt cctgcccggt
     4561 agcgtcgccg caatgccggc tctggatagc ggccgcagag catatgccag tcgagaatgc
     4621 cggccatcca gtcttgtagt cccacaacat aaccgtcgag ggtctcgcgg gctgctgcat
     4681 cgagctggaa atcatcgacg atcaggtgca gctccgtggc aataatgtgc tcgaactggc
     4741 gcatccgcga ggtcatcagg tcgttgacga cccctaccgc ttgctcgcga tcgatgtcga
     4801 ggaacttttg cgcgatcagc acgaggttgt gcaactcacc ttcgaactct atctccttct
     4861 ggtaggagaa gatgtcgttg gtgaaacacg catagttgac ggccgaattc tccagtccca
     4921 acatcgtgcg ggtgcggaag atctccgccg gaaccgcgcc cgtcttggtg atgcgagcca
     4981 ggctcatcgt catatctgaa ccgaaggtgt ggcgccgcat ctcgatgtag tcaaccgggt
     5041 cgggaatccg atgctgggtg tggtttgcga gctcccacaa ccagctggtc gtcatgctct
     5101 cgacggcgtg ccggaactgg cgccgctggg ctgtggtcat cgaagcggcg gtgcggatcc
     5161 acagatcggc caagcccgct tctaccgcgt tggccggcgg tggtgtatcg gcacaatcaa
     5221 ggggcatgaa cgccggcaac cgggcgttga acaccttcgc ggccgcgatg ttccgggttg
     5281 gcccgaaaac cgctgggaag tagtcatcac cgtaggtccc ccaggtcagc cacgccgagg
     5341 agagatcaag ctggggaccg gatgcgtccg gatggattcg cgccgcgcag ttggcgaaat
     5401 cgaacaacgc gagggtttcc tcatcccaga tccctatacc gtcagggagt agctctaaca
     5461 tccccatctg gcgcgcccag gtgatgcaat actgccgcga gcgctccaga tgaccgttga
     5521 cccgggcggt atacggcatg tagaagtccg gcaatttggt gggtcccacc aacaggtagg
     5581 gtgaatgggt gtggtatttg accctttgca gacccagccc gtcgggtgac aacttaatct
     5641 gagctgccga agtgcccagc cctcttgggc cgctgagcag tcgctgcgct atcgacggtt
     5701 ctgccgttgc gttgtcgttc atgtagcggc tcgatcgcat gtgccactca tggccacccg
     5761 attgccaatc ttgtaggccc ttcacgaaca gcaatgcact ctcccgctcg ggagggttca
     5821 ggtcacattc ctcaaacagg gatggcagct cggtgagggc ggtgttctcg aactgctgca
     5881 ggcgggaggt caagatgtcg ttggtgagat cagcagcgcg ctgtggactg acgccgagaa
     5941 atcgttccaa taccaggacg cagttgttga cctcaccttc gtgctgggtt tcgcgctggt
     6001 aggagaacag gtcattgcgc aggtgtaccc cgtcagcgaa gctgtccttc aggacccgaa
     6061 tcggtcggct gtccgcgacc ctggccggga tctcgacgaa cgcagcatgc tccacgaggt
     6121 cagccgacca tggagcgcca ccgaccttgc ggcgcacctc gatgtactca atcgggttcg
     6181 ggatccgatt tccgctgata ttggaaagct cccacgtcga ctcgtaaagg aggttcttcg
     6241 tgctctcgaa aaacctccgc cgccaatcca gcgatctcat cgggatggta cgtgcccata
     6301 agtcaagcaa acctcgctcc accggattgg tcggtgccgt cggggagctg gcgaggtcgg
     6361 ccggcatgaa tgcaggcaac ctgtcgaggt actcttttgc accggcctga tcctgggtgc
     6421 gtttgtagac ttccaggaaa tggtcgtcga agtagaacac ccagacgtac cagtccgtca
     6481 ccaggtcgag ctcggaactc ggcgcgtcgg gatgggtgta cgcgcagagc aacgcgaagt
     6541 ccatcgagtc gaacttggcc tcgtcccaga tattcgcttc aggagcatcc ggtgacgcac
     6601 ccagtattcc catctcacga gcccacgact tggtgtgcgc gcgagctacg tccagatggg
     6661 ggttcaaccg agccgggtaa ggcatgtaga agtctggcaa ttcatagggt tgcatgacca
     6721 gccctcaatc gatacgcggg tcgaggctcg attgcgctat ttcggtttct ttgtcgatga
     6781 gggtttcgcg ggttccggag attccgacgg ttggtcaggc gctggcagat catcgtaatg
     6841 tgctacttcg acgttttcga gaatgccgat ggcatcgggc accatgatcg cggctgagta
     6901 gtatgcactg accaggtagc gcatgatggc tttctcgtcg atgctcatga agcggacatt
     6961 caagccgggt tggacttcgt cggggagccc ggtctggtgc agaccgatca caccttgctt
     7021 ttccaagccg gtccgcatca gcagaatcga actggtctgg tacttgtcta cggggatctt
     7081 gctgcagggc agcagaggga tgccccgcca ggccggcatc ttgtggccgc cgaggtcgac
     7141 gttgtgcggg taaatgcccc ggcgactgca ttcccggccg aacgcggcga tcgcccgggg
     7201 gtgcgccagc agaacgtccg gctccttcca cacggtggcc agcaggccgt cgaggtcatc
     7261 aggagtgggt ggcccggtgc gggtgttgat ccgctgttca aaggcggtct ggtggaggag
     7321 gccgaagtcc ttgttgttga tcagttcgtg ttcttgcttc tcccgcaaag cctcaatggt
     7381 cagccgtagc tgctcttcga actggttcat cgggttgttg taaagatccg cgacccgggt
     7441 gtgcactcgc agcacggtct gtgccacgct gagctgatac tcccgaggtg acagctcgta
     7501 atcgacgtag gttccgtcca gcggatattc ctgagggtga tgtgcgctca gctcgatgag
     7561 agcctcacca tgttcgttct gaggctggtc gagggtagct cggaatcgcc taatagtctc
     7621 ccgtaaggga tcggattggt cgactacccg gtagaatgcc tgctccgata tcaccattac
     7681 cttgcatggg gttaccgcgg tcaccgtata gggccagtta tcatgggtct cgtcgtcgcg
     7741 ctggaccaac tgccgatcgc cgaaatattc gccgtcggac agaacaccga gcaccacccg
     7801 atcgtcatac ttccccggac cgatcacgtt cactctgcca tgagcgatga cgaacagctc
     7861 gttagccgga tcaccctccc gcacgagggt gctaccgcgt tctatgtcgc gttgctcgaa
     7921 ctggttcgcc aggtcggtca gtgtgtccgg gtgctcagtg aaatccttca gcatcggcaa
     7981 ctcacgaagt tcatcgggcc tgaccttgat ctgggcgtcc ccattcatct cgaacgtgac
     8041 ccggccatcg cccacggtat agctcgcccg gcggttcacc cggaaagtcc cacccgcggc
     8101 ctccacccat ggcagcacac gcagcagcca gcgcgaggta atttcctgca tctgcggcac
     8161 agatttggtc gtcgtcgcca ggttgcgggc ggcgtccgta gccaaagtta actgtggacg
     8221 ttgaccattc tgcggttgct gaccgttaac gcccgactcc acctgcaccg actcagtcac
     8281 gccacacacc accgatctca tcattgacag caattagtgt catggtcacg acacatttta
     8341 gggatcacga ggtgaggcgc catccgtaca aactacggat tgaatacgga gtctggtatc
     8401 ggcgttaacc gcatcgccgg gtccgtagaa attacggacc cggcgtgaac cccagctcgg
     8461 cagcgtggtg caccagctgt tgcttgccgg tgattccgag tttggggtag ctgcgggcga
     8521 ggtgggtctc gacggtacgc acgccgatgt gcaggcgggc ggcgatctgc ggggctgtgt
     8581 agccacccgc ggccagctca gcgacctgcc gctcgcgtcg ggtgagcgtc accgggccgg
     8641 gttggttcgg tgcggtgcat cgcccgtctg acccgagttg ccgcagctgc gagcgggctt
     8701 gctgatgccg catggtggca ccgcattcgt cgaatgcgac tgctgccgcg cgcaacgctt
     8761 ccgcggccgc accgcgatcg gatcgttgga ttgcttctgc gtaggtgacg cgggcccgcg
     8821 ccgccagcag gacatatccg cgagcgctga atccttcgac cgcccgcaac gcggctcgcg
     8881 ccgctgcatc gtgatgacca cgcccgatca gtgcccacgc cgtgaccagc agatgcagcg
     8941 tctggtggat gggcgcgccg gtgcagcggg cgttgtcctc ggcccattgc tcgacgctgg
     9001 cgacggtgtc gccatcaccg gcgaccaccg tggcctcggc cagatccgcc agaacgaatc
     9061 ctctcagggc ataggcaccc atcgccgagt agcggtcgac cgcacgttgg agcgcggcgg
     9121 ccgcagtggt gaaccggccc tcgaccctgg ccaccacgcc ctctgcccac cagtacaacg
     9181 gctcgagaat tccgagggtc ccggtgtcga tacacgtcat gccgtgcagg tgccggcgag
     9241 cttcggtgag atcgccttgc tccgctgccg ccatcgccgc tcggccggcc agccggaccg
     9301 gcacgcggga tcgatcctcc acctcgtggc gctctgcttg ctgtgtatgc gcttgtgcca
     9361 tggtcagatc cccggcgagc agctcgatga gcgcgctgca gcggccgatc atcgggtcat
     9421 tgggtgggct ggacgcggcg gcctgggcac accgggtgcg tgcggaaacc aggtgtcccc
     9481 ggcaggcgtc cagggaggcg agcagcgcca ggctctgcga catccacggg aagtgcgctg
     9541 ctgcggtggc cagctcgacg ctgcgcgaga gcacggtctc ggccgcgtcg aaacggcctt
     9601 gccagcccaa agtgtgcccc agcgccccga gtgcctccgc gatcccccgt tggtctccat
     9661 ccccctctgc ttcgctcaac agcgctcgcg ccgccacctc ttcgccgcgc aggtcaccgg
     9721 cccatccgcg aattttggcc agctcgattg cagctgccct ggccgcgacg tggcggccgg
     9781 cctgctggga cagggcaaag gcctgccggc actcgcgttc acccgcatcg acgtcacccg
     9841 ccccgtaggc gaacaaaccc gccagccaca accgcacgtc ggcttgccgt tgcaggtcgc
     9901 ccaccccggg gagcagcggc cgcattcgct gcactgcggc ggtctcggcc acatagtgct
     9961 cggtccgatc gacgatgccc cagttcgccc gctggcacag cgcatcgaac acctcgcacc
    10021 agcgttcgtc gccggccggg aggagatccc gcaacgtcga gacggtttgc cactccaggg
    10081 aactcaaccc gcgctggtgg gctcgacgga ccatctcgat cagcgcgacg atcgcctcac
    10141 cgtccccggt ctgcgctgcg cgaatgtagt gcgatgccgc agcctccggc tgtctggact
    10201 caagcagcgt cgccgctacc tgccggtgca tcacccgccg cctggcggca ccgatgtcgg
    10261 tgtacagcac ctcccgggtg agcacatggg cgagcgtgta gccaagggat ccctcactct
    10321 gctgctcgac caccgtgccg gcacgtgcga gttgctccag ggccaccgcg acgtgctcga
    10381 tcggtgagct ggtgatgcga gagaggtcgt ttggatccac cgcgtcgccg gcaacagcga
    10441 ggagctcaag gaggcccagg gcggacggat cgagttgcgc cagctcggtg cgtatccagc
    10501 gggccagcct ctccggaacc cggcccaagg ccggtgcctg gaagtctgcg tcgcactcga
    10561 ccaatgcctc cagcaggccc acggcgaacc gggggttgcc ctgcgcgcga gccatcaacc
    10621 agtccaccag cggtgaaggc acacggtctt gccggagggt gtctgccgtc agctcccgga
    10681 tgtcttgccg ggagaacggc gccagtgcaa ttcggcgtac tcgcccgtcc tgctccaggg
    10741 catgcagcgc cgcaagggct gtccggttcc tggccagctc tgccggccgg gctgtagcga
    10801 ggacgaacag gcggctgctt ggacagtccc gcgcgagccg gagcagcatc gcccacactg
    10861 catcatcgct gcggtgggcg tcgtcgagga ccacgacgat gggcctttcc gcactagccg
    10921 tggcgagcag accgggcatc cactcgacga agtggtagcg aagagcttcc gcgcacgaag
    10981 cggcgtcgtg ggcgataccg gcacggcgta cgagcggagg aagaccacca accccgctcc
    11041 cgcaggcacg acagacgcga tcagtgtcgg ggccatccgc acgcagatca agagcatcgg
    11101 cccaggggcc gaaggacggc atacccttga agagacaact gtgcgcgatc agcccgccgg
    11161 cgaactcatg gccgtgaggt accagttcgg ccaccagccg cgtttttccc agccccgggt
    11221 caccgagcac caaggccacc cgcagctcac cgagcgtgct ccgttgctgt tcggcccgca
    11281 acactgcgag ttcccggacg cgtcccggca cgagaagccg attgctgccc atgtagcaga
    11341 gtgagctgac agtgctggcc attgtcacgt ctcaacagtc gcgtagaaat taatgtgccg
    11401 actgcacata gaagtcgtca cctcggataa ctgtcgacgc ctcagcttga tgtccgagtt
    11461 agaagtaatg ctcctcgatc gaggggttac ggtcgacatc ttggaattcg ccaagaaaca
    11521 gccggacacc gtgggtggac cggacgtgtg ccccccaaaa aaactgctcg gagtttctaa
    11581 taacaacgtt gaggttagca gtaaatgcca aaactcgtga agtcgcccaa aagtgggcga
    11641 ttcgcatacg agttcccatc actcttggtg agagctggat gattattcat catccacatg
    11701 gtctattgcg gacatcgcac gatccgtccc aggcaatcaa gcgccgctga tcaccggtgc
    11761 gaccgcggcg atcatggtgc tagtcgccgg gatcacgggg acagccgagc atcgcggtca
    11821 ccaccgaggg ggcagcgctg gcgggtgcct gctgttggtc gccagtcacc atgttgcgga
    11881 tggtcactgt gccggccgcc cactcgtcgg ctccgatgat caccgcaatg tgggccccgg
    11941 ccttgtttgc gcgggcgagt tccttgccca gcttgcgaga ttccagcggc gtgctggtcc
    12001 gcagaccggc ccggcgcaga tcgcgtgcga gctgccgggc agcctcagcc agcgtcggaa
    12061 ccaccgggat gaccgcgaca tccacctcgc tgcgtggtgc gggcagcagg tcatgggtac
    12121 cgaggaagtc catcagggtg acgtcgccca taccgaaacc gatgccgggg atctgagcgg
    12181 cgctgaacag tccgaccaga ttggagtacc ggccgccgcc gaacagtgac cggcgattct
    12241 ccgggctggt gtcgaacacc tcgaaaaccg tcgaggtgta gtagtcaaag ccccgtacga
    12301 tcatcgggtc gaatgccacc agatcccgcg cactactgct gagcacacgc agcagaaccg
    12361 actgctcgcg cgcctcgctg ggcagttcgt cgagcagcgc gtcaccagcg cccaggattt
    12421 cccccagccg atggaattgt ttgtcggtca agcccaattc ggtggcttcc tgacctaggc
    12481 gatcttgcgg gtatttctcc cagcggtcaa tgagtgcact gacatcccgg atcagatcgg
    12541 ccggaacctc caccatcgtg gtgaggatcg cgttgagcag tacccggtca ctcacgcgta
    12601 agacccacat gtcgggcgac gctttcagag cggccatcat gtcgtggatc agctcgaaga
    12661 tctcgatctc gcaagctgga ctgtccgagc cgaaaacgtc aacgttgatc tgccagtgct
    12721 cacgcacccg gccgcgttgc gggcgctcgt accggtgaca gttcggatgg ctgtaccagc
    12781 gcactggaaa ctgcagcttt ccggcgttgc cggcgatgat ccgcgccacc gacggtgtca
    12841 tctccggtcg tagcgccagc cgccggtcac cccggtcggt cagggtgtac agctgttgct
    12901 ccacgatctc gcggctcgac ttcgcctcgt agatctcgac cggttccagg atcgggccgt
    12961 catagcgcac atacccgtac cgctcgatca cgtcgtacag actctcgaag acctgagtgc
    13021 ggacactcat ctcgggcggc aggaagtcac gggtgccccg gtagggcgcg gtcggcaggt
    13081 agtcagccac ggtagaagag ggtaggcgcc gcccgggcgg tcatcgccgg gacctcgccg
    13141 cccgcttacc gcgcggcgcg gagcaccgcc gcgaccgcct gcacggcgtg gcgcacacca
    13201 gcggtggtga cgtcgtgatg agccaccgcc cggatcagat cggggcccag cgcgcccatc
    13261 cgtacgccgt gctcagcctc cagccgcgcg cagaacttct ccgcatcggc caggccgaac
    13321 accacgatgt tggtctcgac ggtctccggg tcgagcgtga tgccgggtag cccggcgagc
    13381 cccgcggcga ggagccgggc gttggcgtgg tcctcggcga gccggtgcac gtggtggtcc
    13441 agcgcccaca ggcagcctgc ggccacgatc ccggcctgac gtagcgctcc gcccatcatc
    13501 tgcttgtagc gccacgcctc ctcgatgagc tccgtcgagc cggccagcac ggcacccacc
    13561 ggcgcgccca ggcctttggt gaagtcgatc caggcggtgt cgaacccgct cgcccactcg
    13621 gccgccggga ctcctgaagc gaccaccgcg ttcatcagac gcgcgccgtc cagatgggtg
    13681 cgtaaccggt gccgcgcggc gacctccagc actgcacgca cctgctgcag cggcca
//
